Query 037222
Match_columns 904
No_of_seqs 499 out of 4092
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 16:56:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037222.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037222hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 4.9E-49 1.7E-53 457.6 20.0 310 161-493 131-471 (549)
2 1vt4_I APAF-1 related killer D 100.0 1.4E-39 4.9E-44 379.2 18.6 285 159-486 129-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 6.9E-37 2.3E-41 394.9 28.2 310 157-492 123-451 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 1E-34 3.6E-39 342.8 27.2 305 157-490 123-449 (591)
5 4fmz_A Internalin; leucine ric 99.9 5.8E-23 2E-27 225.6 21.0 287 514-863 41-328 (347)
6 4fmz_A Internalin; leucine ric 99.9 1.3E-22 4.4E-27 222.8 23.5 297 499-856 48-344 (347)
7 2id5_A Lingo-1, leucine rich r 99.9 9E-22 3.1E-26 226.0 24.9 129 517-649 32-164 (477)
8 3o6n_A APL1; leucine-rich repe 99.9 4.2E-22 1.5E-26 222.3 20.6 292 515-867 43-339 (390)
9 3v47_A TOLL-like receptor 5B a 99.9 7.3E-22 2.5E-26 225.5 22.2 348 500-876 15-401 (455)
10 3vq2_A TLR4, TOLL-like recepto 99.9 1.7E-21 5.9E-26 231.0 24.7 148 500-652 16-168 (606)
11 2z63_A TOLL-like receptor 4, v 99.9 3.4E-21 1.1E-25 226.8 27.0 148 499-651 11-163 (570)
12 2id5_A Lingo-1, leucine rich r 99.9 1.6E-21 5.4E-26 224.0 22.0 307 521-875 15-325 (477)
13 3oja_B Anopheles plasmodium-re 99.9 1.1E-21 3.6E-26 231.4 20.0 289 516-864 50-342 (597)
14 1o6v_A Internalin A; bacterial 99.9 5.4E-21 1.9E-25 218.5 25.2 137 503-650 54-190 (466)
15 3o6n_A APL1; leucine-rich repe 99.9 2.9E-21 9.9E-26 215.5 22.1 271 536-864 42-313 (390)
16 1o6v_A Internalin A; bacterial 99.9 6.3E-21 2.2E-25 217.9 23.6 299 516-863 45-348 (466)
17 2z81_A CD282 antigen, TOLL-lik 99.9 2.7E-21 9.2E-26 226.4 20.8 145 503-651 13-162 (549)
18 4ecn_A Leucine-rich repeat pro 99.9 1.7E-21 5.9E-26 234.7 19.0 328 514-866 445-826 (876)
19 3t6q_A CD180 antigen; protein- 99.9 1.4E-20 4.7E-25 223.1 24.1 342 500-876 17-431 (606)
20 2z7x_B TOLL-like receptor 1, v 99.9 2.2E-20 7.4E-25 217.1 24.8 141 499-649 4-150 (520)
21 3oja_B Anopheles plasmodium-re 99.9 7.6E-21 2.6E-25 224.1 21.2 271 536-864 48-319 (597)
22 4eco_A Uncharacterized protein 99.9 2E-21 6.7E-26 230.4 16.3 327 515-866 204-586 (636)
23 2ft3_A Biglycan; proteoglycan, 99.9 4.8E-21 1.6E-25 208.7 17.6 294 518-856 34-331 (332)
24 3t6q_A CD180 antigen; protein- 99.9 1.5E-20 5.2E-25 222.8 22.8 248 585-864 274-541 (606)
25 1xku_A Decorin; proteoglycan, 99.8 2.6E-20 8.9E-25 202.7 21.4 295 517-855 31-329 (330)
26 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 5.6E-20 1.9E-24 215.5 24.7 141 499-649 35-181 (562)
27 3bz5_A Internalin-J, INLJ; leu 99.8 1.2E-20 4.2E-25 213.8 17.3 298 517-861 42-354 (457)
28 3j0a_A TOLL-like receptor 5; m 99.8 1E-19 3.6E-24 223.2 25.8 150 498-651 7-162 (844)
29 4eco_A Uncharacterized protein 99.8 1.2E-20 4.2E-25 223.6 16.9 112 535-650 202-343 (636)
30 3vq2_A TLR4, TOLL-like recepto 99.8 3.8E-20 1.3E-24 219.3 20.2 150 520-687 14-164 (606)
31 4fcg_A Uncharacterized protein 99.8 7.4E-20 2.5E-24 198.3 20.7 82 563-648 80-161 (328)
32 4ecn_A Leucine-rich repeat pro 99.8 1.9E-20 6.5E-25 225.6 17.6 187 527-739 435-655 (876)
33 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 2.2E-19 7.4E-24 210.5 25.7 127 519-651 33-160 (562)
34 2z7x_B TOLL-like receptor 1, v 99.8 6E-20 2.1E-24 213.3 20.3 125 520-651 3-129 (520)
35 4fcg_A Uncharacterized protein 99.8 3.7E-20 1.3E-24 200.6 17.0 108 537-649 79-195 (328)
36 3v47_A TOLL-like receptor 5B a 99.8 4.2E-20 1.4E-24 210.8 18.3 315 514-857 51-407 (455)
37 1ziw_A TOLL-like receptor 3; i 99.8 1.1E-19 3.6E-24 218.6 22.2 148 499-651 8-159 (680)
38 3rgz_A Protein brassinosteroid 99.8 3.4E-20 1.2E-24 225.1 17.9 272 563-867 393-726 (768)
39 3rgz_A Protein brassinosteroid 99.8 2.6E-20 9E-25 226.1 16.3 319 516-865 222-558 (768)
40 3bz5_A Internalin-J, INLJ; leu 99.8 6.8E-20 2.3E-24 207.7 18.1 305 500-864 47-379 (457)
41 1ziw_A TOLL-like receptor 3; i 99.8 4.4E-19 1.5E-23 213.2 24.6 174 521-713 8-182 (680)
42 3j0a_A TOLL-like receptor 5; m 99.8 3.8E-19 1.3E-23 218.1 23.2 305 521-863 8-379 (844)
43 1ogq_A PGIP-2, polygalacturona 99.8 8.8E-20 3E-24 196.5 14.6 106 539-649 50-161 (313)
44 2z63_A TOLL-like receptor 4, v 99.8 3.8E-19 1.3E-23 209.2 19.8 333 514-876 49-524 (570)
45 2z81_A CD282 antigen, TOLL-lik 99.8 5.1E-19 1.7E-23 207.0 20.3 123 522-649 10-135 (549)
46 1ogq_A PGIP-2, polygalacturona 99.8 2.4E-19 8.2E-24 193.1 15.5 248 517-836 50-306 (313)
47 4g8a_A TOLL-like receptor 4; l 99.8 1.6E-18 5.3E-23 206.8 20.1 144 502-651 38-187 (635)
48 2z80_A TOLL-like receptor 2, v 99.8 9.8E-19 3.4E-23 192.1 15.7 147 522-687 36-185 (353)
49 1xku_A Decorin; proteoglycan, 99.8 5.8E-18 2E-22 184.1 20.2 245 539-838 31-279 (330)
50 2z80_A TOLL-like receptor 2, v 99.8 2.4E-18 8.1E-23 189.0 16.0 193 500-713 36-233 (353)
51 2z66_A Variable lymphocyte rec 99.8 3.4E-18 1.2E-22 183.8 16.6 242 521-832 11-259 (306)
52 2ft3_A Biglycan; proteoglycan, 99.8 4.2E-18 1.5E-22 185.3 17.1 264 539-857 33-306 (332)
53 3g06_A SSPH2 (leucine-rich rep 99.8 9.9E-18 3.4E-22 195.5 21.3 113 519-650 42-154 (622)
54 3zyi_A Leucine-rich repeat-con 99.8 5.6E-18 1.9E-22 192.6 17.1 224 539-796 75-301 (452)
55 3zyj_A Leucine-rich repeat-con 99.8 7E-18 2.4E-22 191.1 16.6 221 517-796 64-290 (440)
56 3zyi_A Leucine-rich repeat-con 99.7 2.5E-17 8.5E-22 187.3 20.3 242 541-856 56-301 (452)
57 3zyj_A Leucine-rich repeat-con 99.7 3.5E-17 1.2E-21 185.4 21.0 242 541-856 45-290 (440)
58 1jl5_A Outer protein YOPM; leu 99.7 5.4E-17 1.9E-21 183.7 20.6 210 500-739 76-288 (454)
59 2z66_A Variable lymphocyte rec 99.7 4E-17 1.4E-21 175.4 17.7 239 501-797 13-260 (306)
60 4g8a_A TOLL-like receptor 4; l 99.7 8.7E-17 3E-21 191.7 21.8 131 502-636 59-196 (635)
61 3o53_A Protein LRIM1, AGAP0063 99.7 1.3E-17 4.5E-22 179.9 13.2 249 537-865 32-282 (317)
62 3o53_A Protein LRIM1, AGAP0063 99.7 2.7E-18 9.2E-23 185.4 7.4 263 517-860 34-301 (317)
63 1ozn_A Reticulon 4 receptor; N 99.7 9.1E-17 3.1E-21 170.6 16.6 220 520-797 14-237 (285)
64 3g06_A SSPH2 (leucine-rich rep 99.7 2E-16 7E-21 184.5 19.4 253 498-832 43-295 (622)
65 1jl5_A Outer protein YOPM; leu 99.7 2.6E-16 9E-21 178.0 19.1 264 517-860 131-410 (454)
66 3oja_A Leucine-rich immune mol 99.7 2.5E-16 8.6E-21 180.0 16.7 239 536-855 31-272 (487)
67 1ozn_A Reticulon 4 receptor; N 99.7 9.8E-17 3.4E-21 170.4 11.2 214 502-773 18-236 (285)
68 3oja_A Leucine-rich immune mol 99.7 7.3E-17 2.5E-21 184.5 9.0 236 517-833 34-274 (487)
69 2xwt_C Thyrotropin receptor; s 99.7 5.1E-16 1.7E-20 160.2 13.2 94 551-650 22-118 (239)
70 1wwl_A Monocyte differentiatio 99.6 1.4E-16 4.9E-21 171.3 9.2 225 541-832 65-307 (312)
71 2qen_A Walker-type ATPase; unk 99.6 4.8E-15 1.6E-19 162.5 21.4 294 157-487 11-349 (350)
72 1h6u_A Internalin H; cell adhe 99.6 5.7E-16 2E-20 166.1 13.4 190 537-796 39-228 (308)
73 1wwl_A Monocyte differentiatio 99.6 8.2E-17 2.8E-21 173.3 6.3 246 537-859 41-309 (312)
74 3ogk_B Coronatine-insensitive 99.6 3.6E-16 1.2E-20 184.6 11.2 290 537-861 190-528 (592)
75 2fna_A Conserved hypothetical 99.6 1.1E-14 3.9E-19 159.9 22.2 292 158-486 13-356 (357)
76 2xwt_C Thyrotropin receptor; s 99.6 2.2E-15 7.6E-20 155.3 15.3 111 529-647 23-140 (239)
77 2ast_B S-phase kinase-associat 99.6 3.5E-16 1.2E-20 170.5 9.8 209 559-831 63-282 (336)
78 1z7x_W Ribonuclease inhibitor; 99.6 5.7E-17 1.9E-21 185.2 3.2 258 518-796 4-295 (461)
79 1w5s_A Origin recognition comp 99.6 6.6E-15 2.3E-19 165.3 18.3 305 158-482 22-387 (412)
80 1h6u_A Internalin H; cell adhe 99.6 2.7E-15 9.2E-20 160.9 14.4 146 515-687 39-184 (308)
81 1z7x_W Ribonuclease inhibitor; 99.6 1.9E-16 6.3E-21 180.9 5.2 314 517-860 56-412 (461)
82 2o6q_A Variable lymphocyte rec 99.6 3.8E-15 1.3E-19 156.6 14.5 123 520-647 19-143 (270)
83 2z62_A TOLL-like receptor 4, v 99.6 4.7E-15 1.6E-19 156.5 14.6 109 539-650 28-137 (276)
84 1p9a_G Platelet glycoprotein I 99.6 4.6E-15 1.6E-19 157.4 13.7 128 517-650 10-137 (290)
85 2z62_A TOLL-like receptor 4, v 99.6 1E-14 3.5E-19 154.0 16.0 215 503-773 15-235 (276)
86 3rfs_A Internalin B, repeat mo 99.6 1.8E-15 6.2E-20 159.2 10.0 128 516-649 40-169 (272)
87 4ay9_X Follicle-stimulating ho 99.6 1.2E-14 4.1E-19 159.0 16.9 104 542-651 12-118 (350)
88 2ast_B S-phase kinase-associat 99.6 1E-15 3.5E-20 166.8 8.3 225 564-855 47-282 (336)
89 2o6q_A Variable lymphocyte rec 99.6 9.8E-15 3.3E-19 153.5 14.8 197 541-773 18-216 (270)
90 1p9a_G Platelet glycoprotein I 99.6 5.7E-15 2E-19 156.7 12.8 199 536-796 7-206 (290)
91 3ogk_B Coronatine-insensitive 99.6 2.1E-15 7.3E-20 178.0 9.6 309 517-854 192-547 (592)
92 2ca6_A RAN GTPase-activating p 99.6 1.7E-15 5.9E-20 168.4 6.2 86 536-622 29-132 (386)
93 4ay9_X Follicle-stimulating ho 99.5 3E-14 1E-18 155.8 14.9 238 521-794 13-255 (350)
94 2p1m_B Transport inhibitor res 99.5 3.2E-15 1.1E-19 176.5 7.7 84 760-857 430-518 (594)
95 2ca6_A RAN GTPase-activating p 99.5 7.3E-15 2.5E-19 163.3 9.2 243 552-832 21-314 (386)
96 3qfl_A MLA10; coiled-coil, (CC 99.5 8.4E-15 2.9E-19 129.4 6.9 83 7-97 1-84 (115)
97 4ezg_A Putative uncharacterize 99.5 1.4E-13 4.9E-18 137.0 14.2 151 515-688 42-193 (197)
98 3rfs_A Internalin B, repeat mo 99.5 1.5E-13 5.1E-18 144.5 14.7 168 500-686 46-215 (272)
99 3m19_A Variable lymphocyte rec 99.5 1.4E-13 4.8E-18 142.9 13.0 130 518-651 15-145 (251)
100 3goz_A Leucine-rich repeat-con 99.5 6.3E-14 2.2E-18 154.1 10.8 244 538-832 21-295 (362)
101 2p1m_B Transport inhibitor res 99.5 6.2E-15 2.1E-19 174.1 2.5 78 517-597 156-243 (594)
102 1h6t_A Internalin B; cell adhe 99.5 8E-14 2.8E-18 147.9 10.8 122 517-648 46-167 (291)
103 3m19_A Variable lymphocyte rec 99.5 3.1E-13 1.1E-17 140.2 14.8 168 500-687 19-190 (251)
104 4glp_A Monocyte differentiatio 99.5 5.6E-14 1.9E-18 150.9 9.4 209 562-832 89-305 (310)
105 1m9s_A Internalin B; cell inva 99.5 9.9E-14 3.4E-18 161.6 11.7 103 536-648 40-142 (605)
106 1h6t_A Internalin B; cell adhe 99.5 1.7E-13 5.7E-18 145.5 12.5 172 534-740 41-212 (291)
107 3goz_A Leucine-rich repeat-con 99.4 4.9E-14 1.7E-18 155.0 6.2 259 545-859 4-297 (362)
108 1m9s_A Internalin B; cell inva 99.4 2E-13 6.8E-18 159.1 9.8 171 512-713 38-208 (605)
109 3e6j_A Variable lymphocyte rec 99.4 1.3E-12 4.3E-17 133.4 13.7 129 517-649 40-171 (229)
110 2v9t_B SLIT homolog 2 protein 99.4 9.4E-13 3.2E-17 133.4 12.4 148 521-687 15-163 (220)
111 1xeu_A Internalin C; cellular 99.4 1.9E-12 6.4E-17 135.1 13.2 150 511-688 35-184 (263)
112 4ezg_A Putative uncharacterize 99.4 2.2E-12 7.5E-17 128.3 12.9 146 499-650 48-194 (197)
113 2qby_B CDC6 homolog 3, cell di 99.4 2.1E-11 7E-16 135.3 21.7 288 158-471 20-339 (384)
114 4glp_A Monocyte differentiatio 99.4 6.7E-13 2.3E-17 142.5 9.3 129 519-650 93-237 (310)
115 2v9t_B SLIT homolog 2 protein 99.4 3E-12 1E-16 129.6 13.0 146 500-650 16-165 (220)
116 2o6s_A Variable lymphocyte rec 99.4 2.5E-12 8.7E-17 129.1 11.7 125 521-650 11-137 (208)
117 2v1u_A Cell division control p 99.4 1.4E-11 4.7E-16 136.9 18.5 290 158-471 19-351 (387)
118 2v70_A SLIT-2, SLIT homolog 2 99.3 3.7E-12 1.2E-16 129.0 12.5 148 520-687 14-164 (220)
119 3e6j_A Variable lymphocyte rec 99.3 3.9E-12 1.3E-16 129.7 12.5 148 519-687 21-170 (229)
120 1xeu_A Internalin C; cellular 99.3 5.8E-13 2E-17 138.9 5.8 122 518-650 20-141 (263)
121 2v70_A SLIT-2, SLIT homolog 2 99.3 4.1E-12 1.4E-16 128.6 11.9 144 502-650 18-166 (220)
122 2o6s_A Variable lymphocyte rec 99.3 9.2E-12 3.2E-16 125.0 13.6 143 503-650 15-161 (208)
123 3cvr_A Invasion plasmid antige 99.3 1E-11 3.4E-16 143.0 14.4 38 763-801 208-246 (571)
124 2ell_A Acidic leucine-rich nuc 99.3 5E-12 1.7E-16 122.2 9.9 130 517-651 24-161 (168)
125 1fnn_A CDC6P, cell division co 99.3 1.1E-10 3.9E-15 129.5 22.2 291 158-471 17-351 (389)
126 2qby_A CDC6 homolog 1, cell di 99.3 4.2E-11 1.4E-15 132.9 18.0 291 158-470 20-347 (386)
127 2xot_A Amphoterin-induced prot 99.3 9.9E-12 3.4E-16 136.3 11.8 143 503-650 26-176 (361)
128 2je0_A Acidic leucine-rich nuc 99.3 7.1E-12 2.4E-16 118.4 8.4 124 517-645 17-148 (149)
129 1a9n_A U2A', U2A'; complex (nu 99.3 6.7E-12 2.3E-16 122.3 8.5 137 535-689 15-153 (176)
130 2xot_A Amphoterin-induced prot 99.3 1E-11 3.4E-16 136.3 9.9 153 520-689 21-176 (361)
131 3cvr_A Invasion plasmid antige 99.2 2.9E-11 9.9E-16 139.2 13.7 114 518-650 60-173 (571)
132 2ell_A Acidic leucine-rich nuc 99.2 2.4E-11 8.3E-16 117.3 10.3 134 536-687 21-158 (168)
133 1a9n_A U2A', U2A'; complex (nu 99.2 1.4E-11 4.9E-16 119.9 8.0 130 515-650 17-153 (176)
134 2wfh_A SLIT homolog 2 protein 99.2 6.6E-11 2.3E-15 116.9 11.6 125 520-650 13-139 (193)
135 1njg_A DNA polymerase III subu 99.2 1.9E-10 6.4E-15 118.6 15.4 197 158-366 23-231 (250)
136 2o6r_A Variable lymphocyte rec 99.2 7.7E-11 2.6E-15 114.8 11.7 126 520-650 10-137 (177)
137 2je0_A Acidic leucine-rich nuc 99.2 2E-11 6.9E-16 115.2 7.3 130 536-683 14-147 (149)
138 1w8a_A SLIT protein; signaling 99.2 4.8E-11 1.6E-15 117.9 10.2 127 520-650 11-139 (192)
139 2wfh_A SLIT homolog 2 protein 99.2 8.4E-11 2.9E-15 116.1 10.4 124 542-687 13-137 (193)
140 4b8c_D Glucose-repressible alc 99.1 1.7E-11 5.7E-16 146.6 5.3 152 517-689 173-329 (727)
141 2chg_A Replication factor C sm 99.1 5.9E-10 2E-14 113.0 14.4 183 158-363 17-204 (226)
142 1dce_A Protein (RAB geranylger 99.1 1.5E-10 5.1E-15 134.0 11.1 104 540-651 442-547 (567)
143 1w8a_A SLIT protein; signaling 99.1 1.2E-10 4.1E-15 115.0 8.5 124 542-687 11-137 (192)
144 4b8c_D Glucose-repressible alc 99.1 8.8E-11 3E-15 140.4 8.3 111 535-651 220-330 (727)
145 1ds9_A Outer arm dynein; leuci 99.1 3.3E-11 1.1E-15 119.8 2.4 116 552-688 37-152 (198)
146 1dce_A Protein (RAB geranylger 99.0 2.6E-10 9E-15 131.9 9.7 121 518-644 442-567 (567)
147 1ds9_A Outer arm dynein; leuci 99.0 1.7E-11 5.7E-16 122.0 -1.1 125 519-650 25-153 (198)
148 2r9u_A Variable lymphocyte rec 99.0 7.6E-10 2.6E-14 107.2 9.1 103 542-650 15-118 (174)
149 1hqc_A RUVB; extended AAA-ATPa 99.0 8.9E-09 3E-13 111.0 18.3 272 158-470 12-324 (324)
150 2o6r_A Variable lymphocyte rec 99.0 1.4E-09 4.7E-14 105.9 10.7 125 541-687 9-135 (177)
151 3g39_A Variable lymphocyte rec 99.0 1.1E-09 3.9E-14 105.5 8.9 104 541-650 11-115 (170)
152 3sb4_A Hypothetical leucine ri 99.0 1.7E-09 5.9E-14 116.8 10.9 98 761-875 225-326 (329)
153 3sb4_A Hypothetical leucine ri 98.9 9.1E-09 3.1E-13 111.1 15.6 221 588-851 100-327 (329)
154 1sxj_B Activator 1 37 kDa subu 98.9 5E-09 1.7E-13 112.9 12.1 184 158-364 21-211 (323)
155 2r9u_A Variable lymphocyte rec 98.9 3.5E-09 1.2E-13 102.4 9.4 106 520-630 15-122 (174)
156 3g39_A Variable lymphocyte rec 98.8 1.1E-08 3.9E-13 98.4 9.1 105 519-628 11-117 (170)
157 4fdw_A Leucine rich hypothetic 98.8 4.1E-07 1.4E-11 100.3 21.7 98 540-645 136-234 (401)
158 1iqp_A RFCS; clamp loader, ext 98.7 3E-08 1E-12 106.9 10.1 183 158-366 25-215 (327)
159 3te6_A Regulatory protein SIR3 98.7 3E-07 1E-11 96.6 15.6 171 159-331 21-212 (318)
160 2ifg_A High affinity nerve gro 98.6 6.9E-08 2.4E-12 105.0 10.5 101 544-650 13-116 (347)
161 4fdw_A Leucine rich hypothetic 98.6 6.8E-07 2.3E-11 98.6 17.2 238 518-830 136-379 (401)
162 2ifg_A High affinity nerve gro 98.6 1.1E-07 3.8E-12 103.4 9.3 104 521-626 12-116 (347)
163 2chq_A Replication factor C sm 98.5 3.9E-07 1.3E-11 97.7 12.9 180 158-363 17-204 (319)
164 1jr3_A DNA polymerase III subu 98.5 6.9E-07 2.4E-11 98.2 15.2 194 158-363 16-221 (373)
165 1jbk_A CLPB protein; beta barr 98.5 1.4E-07 4.7E-12 92.8 6.7 150 158-326 22-194 (195)
166 3un9_A NLR family member X1; l 98.4 4.3E-08 1.5E-12 107.1 1.7 156 518-687 73-250 (372)
167 3un9_A NLR family member X1; l 98.4 7.1E-08 2.4E-12 105.4 2.0 37 564-601 101-138 (372)
168 2z4s_A Chromosomal replication 98.3 4.7E-06 1.6E-10 93.0 13.8 182 159-361 106-304 (440)
169 3bos_A Putative DNA replicatio 98.3 4.6E-07 1.6E-11 92.7 5.2 173 158-363 28-217 (242)
170 4fs7_A Uncharacterized protein 98.2 1.1E-05 3.8E-10 89.1 15.7 105 535-646 67-194 (394)
171 1sxj_A Activator 1 95 kDa subu 98.2 9.3E-06 3.2E-10 92.7 14.9 190 158-364 39-254 (516)
172 3pvs_A Replication-associated 98.2 2.3E-05 7.7E-10 87.2 16.5 174 158-362 26-214 (447)
173 1sxj_D Activator 1 41 kDa subu 98.2 4.7E-06 1.6E-10 90.6 10.9 192 158-362 37-234 (353)
174 1d2n_A N-ethylmaleimide-sensit 98.2 3.9E-05 1.3E-09 79.8 17.5 195 159-384 34-263 (272)
175 3syl_A Protein CBBX; photosynt 98.2 4.2E-06 1.4E-10 89.1 10.2 154 159-332 32-219 (309)
176 3h4m_A Proteasome-activating n 98.2 4.7E-06 1.6E-10 87.6 10.2 176 158-361 17-229 (285)
177 2qz4_A Paraplegin; AAA+, SPG7, 98.1 4.4E-05 1.5E-09 78.9 16.6 180 158-362 6-221 (262)
178 1sxj_E Activator 1 40 kDa subu 98.1 1.1E-05 3.6E-10 87.9 12.0 195 158-363 14-237 (354)
179 3pfi_A Holliday junction ATP-d 98.1 0.00041 1.4E-08 74.6 23.4 171 158-362 29-226 (338)
180 2ra8_A Uncharacterized protein 98.0 4E-06 1.4E-10 90.7 6.6 42 604-649 164-205 (362)
181 3e4g_A ATP synthase subunit S, 98.0 3.1E-06 1.1E-10 80.2 4.9 37 763-799 115-153 (176)
182 1xwi_A SKD1 protein; VPS4B, AA 98.0 0.00025 8.7E-09 75.4 20.3 180 158-363 12-223 (322)
183 3d8b_A Fidgetin-like protein 1 98.0 0.0001 3.4E-09 79.9 17.0 179 158-363 84-295 (357)
184 1a5t_A Delta prime, HOLB; zinc 98.0 6.6E-05 2.2E-09 80.6 15.2 171 163-362 7-204 (334)
185 3uk6_A RUVB-like 2; hexameric 98.0 3.4E-05 1.2E-09 84.3 13.3 195 158-361 44-301 (368)
186 3u61_B DNA polymerase accessor 98.0 4.4E-05 1.5E-09 81.7 13.7 176 158-361 26-214 (324)
187 3e4g_A ATP synthase subunit S, 98.0 2.3E-06 7.7E-11 81.1 2.9 86 763-860 62-154 (176)
188 4fs7_A Uncharacterized protein 98.0 8.1E-05 2.8E-09 82.1 15.7 278 517-853 71-374 (394)
189 1sxj_C Activator 1 40 kDa subu 98.0 4.5E-05 1.5E-09 82.3 13.2 173 158-359 25-208 (340)
190 4gt6_A Cell surface protein; l 97.9 0.00015 5.1E-09 79.9 16.7 105 536-646 60-169 (394)
191 3b9p_A CG5977-PA, isoform A; A 97.9 0.00036 1.2E-08 73.5 18.6 179 158-363 21-233 (297)
192 1l8q_A Chromosomal replication 97.9 6.1E-05 2.1E-09 80.6 12.4 166 167-358 23-203 (324)
193 2ra8_A Uncharacterized protein 97.9 3.4E-05 1.2E-09 83.4 10.0 57 586-645 169-227 (362)
194 3eie_A Vacuolar protein sortin 97.9 0.0001 3.5E-09 78.6 13.5 179 158-363 18-228 (322)
195 2p65_A Hypothetical protein PF 97.9 4.1E-05 1.4E-09 74.3 9.5 46 158-203 22-67 (187)
196 2qp9_X Vacuolar protein sortin 97.8 0.00013 4.6E-09 78.8 13.9 179 158-363 51-261 (355)
197 3cf0_A Transitional endoplasmi 97.8 0.00045 1.6E-08 72.8 17.8 174 158-358 15-223 (301)
198 3vfd_A Spastin; ATPase, microt 97.8 0.00044 1.5E-08 75.9 18.0 178 158-362 115-325 (389)
199 2zan_A Vacuolar protein sortin 97.8 0.00056 1.9E-08 76.3 18.7 181 158-363 134-345 (444)
200 3pxg_A Negative regulator of g 97.7 0.00024 8.2E-09 79.9 13.7 149 158-332 180-340 (468)
201 2gno_A DNA polymerase III, gam 97.7 0.00013 4.5E-09 76.6 10.8 147 162-330 1-152 (305)
202 4b4t_J 26S protease regulatory 97.6 0.00074 2.5E-08 72.6 15.5 171 158-356 148-354 (405)
203 3rw6_A Nuclear RNA export fact 97.6 5.1E-05 1.7E-09 77.6 5.9 83 561-645 167-259 (267)
204 1qvr_A CLPB protein; coiled co 97.6 0.00017 5.9E-09 87.6 11.3 154 158-330 170-345 (854)
205 4b4t_L 26S protease subunit RP 97.6 0.00084 2.9E-08 73.5 15.6 171 158-356 181-387 (437)
206 1io0_A Tropomodulin; LRR prote 97.6 5.6E-05 1.9E-09 73.4 5.2 111 536-649 33-163 (185)
207 3n70_A Transport activator; si 97.5 5.6E-05 1.9E-09 70.1 4.6 45 159-203 2-48 (145)
208 3hu3_A Transitional endoplasmi 97.5 0.00089 3.1E-08 75.1 15.1 171 158-355 204-406 (489)
209 1io0_A Tropomodulin; LRR prote 97.5 5.2E-05 1.8E-09 73.7 4.3 118 558-688 30-163 (185)
210 3ec2_A DNA replication protein 97.5 2.9E-05 1E-09 75.1 2.2 117 163-299 19-142 (180)
211 1r6b_X CLPA protein; AAA+, N-t 97.5 0.00068 2.3E-08 81.5 14.6 153 158-330 186-362 (758)
212 1lv7_A FTSH; alpha/beta domain 97.5 0.0027 9.4E-08 65.0 17.3 176 158-360 12-222 (257)
213 4b4t_M 26S protease regulatory 97.5 0.00068 2.3E-08 74.1 13.1 170 158-355 181-386 (434)
214 1in4_A RUVB, holliday junction 97.5 0.0034 1.2E-07 67.1 18.1 171 158-362 25-222 (334)
215 4b4t_I 26S protease regulatory 97.4 0.0013 4.4E-08 71.0 14.2 171 158-356 182-388 (437)
216 4b4t_H 26S protease regulatory 97.4 0.0014 4.7E-08 71.6 14.1 171 158-356 209-415 (467)
217 3pxi_A Negative regulator of g 97.4 0.0011 3.7E-08 79.6 14.8 151 158-332 180-340 (758)
218 2r62_A Cell division protease 97.4 9.9E-05 3.4E-09 76.6 4.8 152 158-332 11-198 (268)
219 4b4t_K 26S protease regulatory 97.4 0.0013 4.5E-08 71.8 13.7 170 158-355 172-378 (428)
220 1ofh_A ATP-dependent HSL prote 97.4 0.0011 3.6E-08 70.3 12.7 46 158-203 15-74 (310)
221 2w58_A DNAI, primosome compone 97.3 0.00041 1.4E-08 68.3 8.3 114 165-299 36-158 (202)
222 4gt6_A Cell surface protein; l 97.3 0.0023 7.9E-08 70.3 15.1 121 518-646 65-191 (394)
223 2ce7_A Cell division protein F 97.3 0.0034 1.2E-07 69.8 15.3 172 158-356 16-221 (476)
224 3rw6_A Nuclear RNA export fact 97.2 0.00025 8.7E-09 72.4 5.6 78 538-619 169-258 (267)
225 4fcw_A Chaperone protein CLPB; 97.2 0.00089 3.1E-08 70.9 9.7 60 158-220 17-85 (311)
226 4h09_A Hypothetical leucine ri 97.2 0.014 4.7E-07 63.7 19.4 103 723-852 235-340 (379)
227 2c9o_A RUVB-like 1; hexameric 97.2 0.0026 8.9E-08 71.2 13.4 46 158-203 37-87 (456)
228 3co5_A Putative two-component 97.2 0.00013 4.3E-09 67.5 2.1 46 158-203 4-51 (143)
229 2kjq_A DNAA-related protein; s 97.1 8.5E-05 2.9E-09 69.1 0.4 55 159-219 19-73 (149)
230 3cf2_A TER ATPase, transitiona 96.9 0.0022 7.5E-08 75.6 9.4 172 158-356 204-407 (806)
231 3pxi_A Negative regulator of g 96.8 0.00082 2.8E-08 80.7 5.1 60 158-220 491-559 (758)
232 2x8a_A Nuclear valosin-contain 96.7 0.025 8.7E-07 58.2 15.3 150 158-331 10-192 (274)
233 1ypw_A Transitional endoplasmi 96.6 0.0089 3.1E-07 71.6 12.6 153 158-333 204-388 (806)
234 1iy2_A ATP-dependent metallopr 96.6 0.031 1.1E-06 57.8 15.2 171 158-356 40-245 (278)
235 3m6a_A ATP-dependent protease 96.6 0.012 4.1E-07 67.1 12.8 46 158-203 81-132 (543)
236 1ixz_A ATP-dependent metallopr 96.6 0.04 1.4E-06 56.1 15.6 171 158-356 16-221 (254)
237 2dhr_A FTSH; AAA+ protein, hex 96.5 0.021 7.3E-07 63.8 13.9 168 158-356 31-236 (499)
238 2vhj_A Ntpase P4, P4; non- hyd 96.4 0.0016 5.5E-08 67.5 3.7 68 179-271 123-192 (331)
239 2cvh_A DNA repair and recombin 96.4 0.0075 2.6E-07 59.9 8.4 87 178-271 19-115 (220)
240 1n0w_A DNA repair protein RAD5 96.3 0.0088 3E-07 60.5 8.8 92 178-271 23-129 (243)
241 3hr8_A Protein RECA; alpha and 96.3 0.01 3.4E-07 63.2 9.0 87 178-272 60-150 (356)
242 2z43_A DNA repair and recombin 96.1 0.016 5.3E-07 61.5 9.7 91 178-270 106-212 (324)
243 1v5w_A DMC1, meiotic recombina 96.1 0.021 7.2E-07 61.0 10.7 58 178-237 121-182 (343)
244 3t15_A Ribulose bisphosphate c 95.9 0.0077 2.6E-07 62.9 5.9 26 178-203 35-60 (293)
245 2qgz_A Helicase loader, putati 95.9 0.0071 2.4E-07 63.6 5.5 41 163-203 133-176 (308)
246 3io5_A Recombination and repai 95.9 0.022 7.4E-07 58.8 8.8 87 180-272 29-122 (333)
247 2zr9_A Protein RECA, recombina 95.7 0.025 8.4E-07 60.4 9.1 86 178-271 60-149 (349)
248 1r6b_X CLPA protein; AAA+, N-t 95.7 0.013 4.6E-07 70.2 7.9 46 158-203 458-512 (758)
249 2b8t_A Thymidine kinase; deoxy 95.6 0.0041 1.4E-07 61.6 2.3 114 178-301 11-127 (223)
250 1rz3_A Hypothetical protein rb 95.6 0.013 4.4E-07 57.3 5.9 42 162-203 2-46 (201)
251 1qvr_A CLPB protein; coiled co 95.6 0.014 4.9E-07 70.7 7.5 45 159-203 559-612 (854)
252 2i1q_A DNA repair and recombin 95.6 0.023 7.8E-07 60.2 8.2 92 178-270 97-213 (322)
253 1jr3_D DNA polymerase III, del 95.5 0.064 2.2E-06 57.3 11.5 163 171-362 10-184 (343)
254 2bjv_A PSP operon transcriptio 95.5 0.015 5.2E-07 59.7 6.2 46 158-203 6-53 (265)
255 1u94_A RECA protein, recombina 95.5 0.032 1.1E-06 59.6 8.8 86 178-271 62-151 (356)
256 1xp8_A RECA protein, recombina 95.5 0.036 1.2E-06 59.5 9.1 86 178-271 73-162 (366)
257 3rfe_A Platelet glycoprotein I 95.3 0.017 5.7E-07 51.9 5.1 56 592-650 11-68 (130)
258 2px0_A Flagellar biosynthesis 95.3 0.049 1.7E-06 56.6 9.3 86 178-269 104-190 (296)
259 2w0m_A SSO2452; RECA, SSPF, un 95.3 0.039 1.3E-06 55.1 8.3 48 179-231 23-70 (235)
260 3ice_A Transcription terminati 95.2 0.0091 3.1E-07 63.2 3.3 99 169-271 163-271 (422)
261 3c8u_A Fructokinase; YP_612366 95.1 0.017 6E-07 56.7 4.9 39 165-203 6-46 (208)
262 1g5t_A COB(I)alamin adenosyltr 95.1 0.01 3.5E-07 56.9 3.0 118 179-300 28-163 (196)
263 1pzn_A RAD51, DNA repair and r 95.1 0.05 1.7E-06 58.1 8.8 92 178-271 130-241 (349)
264 3dm5_A SRP54, signal recogniti 95.1 0.09 3.1E-06 57.4 10.8 26 178-203 99-124 (443)
265 3lda_A DNA repair protein RAD5 95.0 0.073 2.5E-06 57.7 10.0 92 178-270 177-282 (400)
266 4h09_A Hypothetical leucine ri 95.0 0.045 1.5E-06 59.4 8.6 103 536-645 237-341 (379)
267 2ck3_D ATP synthase subunit be 95.0 0.13 4.3E-06 56.3 11.8 100 169-271 142-263 (482)
268 4a74_A DNA repair and recombin 95.0 0.071 2.4E-06 53.1 9.4 57 178-236 24-84 (231)
269 1ojl_A Transcriptional regulat 94.9 0.024 8E-07 59.5 5.5 46 158-203 2-49 (304)
270 1qhx_A CPT, protein (chloramph 94.8 0.015 5.2E-07 55.4 3.5 24 180-203 4-27 (178)
271 3kb2_A SPBC2 prophage-derived 94.8 0.016 5.3E-07 55.0 3.5 24 180-203 2-25 (173)
272 2hf9_A Probable hydrogenase ni 94.7 0.03 1E-06 55.7 5.7 40 164-203 23-62 (226)
273 3lw7_A Adenylate kinase relate 94.7 0.015 5.2E-07 55.2 3.1 23 180-203 2-24 (179)
274 2r44_A Uncharacterized protein 94.6 0.022 7.4E-07 60.7 4.4 44 158-203 27-70 (331)
275 2ga8_A Hypothetical 39.9 kDa p 94.5 0.039 1.3E-06 58.1 6.0 43 161-203 2-48 (359)
276 2wsm_A Hydrogenase expression/ 94.5 0.029 1E-06 55.6 4.8 43 161-203 12-54 (221)
277 3vaa_A Shikimate kinase, SK; s 94.5 0.02 6.8E-07 55.9 3.5 26 178-203 24-49 (199)
278 1zp6_A Hypothetical protein AT 94.5 0.019 6.6E-07 55.5 3.4 26 178-203 8-33 (191)
279 1ly1_A Polynucleotide kinase; 94.5 0.021 7.3E-07 54.5 3.6 22 180-201 3-24 (181)
280 3bh0_A DNAB-like replicative h 94.4 0.12 4.1E-06 54.4 9.4 52 178-234 67-118 (315)
281 1fx0_B ATP synthase beta chain 94.4 0.12 4.1E-06 56.7 9.6 100 170-271 155-276 (498)
282 1kag_A SKI, shikimate kinase I 94.3 0.019 6.4E-07 54.5 2.9 24 180-203 5-28 (173)
283 3trf_A Shikimate kinase, SK; a 94.3 0.023 8E-07 54.6 3.5 25 179-203 5-29 (185)
284 2xxa_A Signal recognition part 94.3 0.25 8.5E-06 54.2 12.0 26 178-203 99-124 (433)
285 1kgd_A CASK, peripheral plasma 94.3 0.024 8.1E-07 54.3 3.4 25 179-203 5-29 (180)
286 3nbx_X ATPase RAVA; AAA+ ATPas 94.2 0.035 1.2E-06 62.2 5.1 44 158-203 22-65 (500)
287 3uie_A Adenylyl-sulfate kinase 94.1 0.032 1.1E-06 54.4 4.2 27 177-203 23-49 (200)
288 1nks_A Adenylate kinase; therm 94.1 0.027 9.3E-07 54.4 3.6 24 180-203 2-25 (194)
289 1um8_A ATP-dependent CLP prote 94.1 0.04 1.4E-06 59.8 5.2 46 158-203 21-96 (376)
290 3hws_A ATP-dependent CLP prote 94.1 0.041 1.4E-06 59.4 5.2 45 159-203 16-75 (363)
291 3t61_A Gluconokinase; PSI-biol 94.1 0.023 7.8E-07 55.6 2.9 25 179-203 18-42 (202)
292 1odf_A YGR205W, hypothetical 3 94.0 0.051 1.7E-06 56.3 5.6 27 177-203 29-55 (290)
293 1vma_A Cell division protein F 94.0 0.11 3.6E-06 54.2 8.0 89 178-270 103-195 (306)
294 3tqc_A Pantothenate kinase; bi 94.0 0.25 8.5E-06 51.7 10.8 96 161-261 70-171 (321)
295 2rhm_A Putative kinase; P-loop 94.0 0.033 1.1E-06 53.8 3.9 25 179-203 5-29 (193)
296 2ffh_A Protein (FFH); SRP54, s 94.0 0.14 4.8E-06 55.8 9.2 25 179-203 98-122 (425)
297 1knq_A Gluconate kinase; ALFA/ 94.0 0.032 1.1E-06 53.0 3.6 25 179-203 8-32 (175)
298 3e70_C DPA, signal recognition 93.9 0.22 7.7E-06 52.3 10.4 26 178-203 128-153 (328)
299 1kht_A Adenylate kinase; phosp 93.9 0.03 1E-06 54.0 3.4 24 180-203 4-27 (192)
300 3iij_A Coilin-interacting nucl 93.9 0.029 9.8E-07 53.6 3.2 25 179-203 11-35 (180)
301 4eun_A Thermoresistant glucoki 93.9 0.032 1.1E-06 54.5 3.5 26 178-203 28-53 (200)
302 2yvu_A Probable adenylyl-sulfa 93.8 0.036 1.2E-06 53.3 3.7 26 178-203 12-37 (186)
303 3tr0_A Guanylate kinase, GMP k 93.8 0.032 1.1E-06 54.5 3.4 25 179-203 7-31 (205)
304 2bdt_A BH3686; alpha-beta prot 93.8 0.035 1.2E-06 53.5 3.6 23 180-202 3-25 (189)
305 1sky_E F1-ATPase, F1-ATP synth 93.8 0.18 6.3E-06 55.2 9.5 99 171-271 142-255 (473)
306 1g8p_A Magnesium-chelatase 38 93.8 0.026 9E-07 60.5 2.9 46 158-203 24-69 (350)
307 1zuh_A Shikimate kinase; alpha 93.7 0.036 1.2E-06 52.3 3.5 25 179-203 7-31 (168)
308 1via_A Shikimate kinase; struc 93.7 0.03 1E-06 53.3 2.9 24 180-203 5-28 (175)
309 2jaq_A Deoxyguanosine kinase; 93.7 0.034 1.2E-06 54.3 3.4 23 181-203 2-24 (205)
310 2ze6_A Isopentenyl transferase 93.7 0.036 1.2E-06 56.4 3.6 24 180-203 2-25 (253)
311 2dr3_A UPF0273 protein PH0284; 93.7 0.12 4E-06 52.1 7.6 48 178-230 22-69 (247)
312 1ye8_A Protein THEP1, hypothet 93.7 0.036 1.2E-06 52.8 3.4 23 181-203 2-24 (178)
313 3kl4_A SRP54, signal recogniti 93.7 0.23 7.8E-06 54.2 10.1 26 178-203 96-121 (433)
314 2bbw_A Adenylate kinase 4, AK4 93.7 0.036 1.2E-06 56.1 3.7 26 178-203 26-51 (246)
315 1y63_A LMAJ004144AAA protein; 93.6 0.04 1.4E-06 52.9 3.7 24 179-202 10-33 (184)
316 2c95_A Adenylate kinase 1; tra 93.6 0.039 1.3E-06 53.5 3.6 26 178-203 8-33 (196)
317 3cf2_A TER ATPase, transitiona 93.6 0.17 6E-06 59.6 9.7 170 158-355 477-682 (806)
318 1tev_A UMP-CMP kinase; ploop, 93.6 0.04 1.4E-06 53.3 3.7 25 179-203 3-27 (196)
319 3tau_A Guanylate kinase, GMP k 93.6 0.042 1.4E-06 54.0 3.8 26 178-203 7-32 (208)
320 3umf_A Adenylate kinase; rossm 93.6 0.042 1.4E-06 54.1 3.7 26 178-203 28-53 (217)
321 3a00_A Guanylate kinase, GMP k 93.6 0.032 1.1E-06 53.7 2.9 24 180-203 2-25 (186)
322 2qor_A Guanylate kinase; phosp 93.6 0.035 1.2E-06 54.4 3.2 26 178-203 11-36 (204)
323 2if2_A Dephospho-COA kinase; a 93.5 0.039 1.3E-06 54.0 3.4 22 180-201 2-23 (204)
324 1uf9_A TT1252 protein; P-loop, 93.5 0.047 1.6E-06 53.2 4.0 26 177-202 6-31 (203)
325 1ukz_A Uridylate kinase; trans 93.5 0.047 1.6E-06 53.3 4.0 26 178-203 14-39 (203)
326 2j41_A Guanylate kinase; GMP, 93.5 0.04 1.4E-06 54.0 3.5 25 179-203 6-30 (207)
327 1gvn_B Zeta; postsegregational 93.5 0.069 2.3E-06 55.3 5.4 26 178-203 32-57 (287)
328 3cm0_A Adenylate kinase; ATP-b 93.5 0.042 1.4E-06 52.7 3.6 24 180-203 5-28 (186)
329 3asz_A Uridine kinase; cytidin 93.5 0.045 1.5E-06 53.8 3.8 26 178-203 5-30 (211)
330 2iyv_A Shikimate kinase, SK; t 93.5 0.032 1.1E-06 53.5 2.7 24 180-203 3-26 (184)
331 3fwy_A Light-independent proto 93.4 0.043 1.5E-06 57.5 3.7 40 177-219 46-85 (314)
332 4gp7_A Metallophosphoesterase; 93.4 0.035 1.2E-06 52.6 2.8 23 178-200 8-30 (171)
333 1cke_A CK, MSSA, protein (cyti 93.4 0.041 1.4E-06 54.8 3.4 24 180-203 6-29 (227)
334 3cmu_A Protein RECA, recombina 93.4 0.16 5.6E-06 65.4 9.5 86 178-271 1426-1515(2050)
335 2bwj_A Adenylate kinase 5; pho 93.4 0.043 1.5E-06 53.3 3.5 25 179-203 12-36 (199)
336 2plr_A DTMP kinase, probable t 93.3 0.049 1.7E-06 53.5 3.8 24 180-203 5-28 (213)
337 1e6c_A Shikimate kinase; phosp 93.3 0.038 1.3E-06 52.3 2.9 24 180-203 3-26 (173)
338 2qt1_A Nicotinamide riboside k 93.3 0.049 1.7E-06 53.4 3.8 26 178-203 20-45 (207)
339 1jjv_A Dephospho-COA kinase; P 93.3 0.045 1.5E-06 53.6 3.4 22 180-201 3-24 (206)
340 1g41_A Heat shock protein HSLU 93.2 0.053 1.8E-06 59.3 4.2 46 158-203 15-74 (444)
341 1lvg_A Guanylate kinase, GMP k 93.2 0.039 1.3E-06 53.7 2.8 25 179-203 4-28 (198)
342 1tue_A Replication protein E1; 93.2 0.07 2.4E-06 51.3 4.5 37 167-203 45-82 (212)
343 1qf9_A UMP/CMP kinase, protein 93.2 0.051 1.7E-06 52.4 3.6 25 179-203 6-30 (194)
344 1xjc_A MOBB protein homolog; s 93.2 0.053 1.8E-06 50.8 3.6 26 178-203 3-28 (169)
345 3a4m_A L-seryl-tRNA(SEC) kinas 93.2 0.053 1.8E-06 55.3 3.9 25 179-203 4-28 (260)
346 2cdn_A Adenylate kinase; phosp 93.1 0.048 1.7E-06 53.1 3.4 25 179-203 20-44 (201)
347 2pt5_A Shikimate kinase, SK; a 93.1 0.052 1.8E-06 51.1 3.5 23 181-203 2-24 (168)
348 2p5t_B PEZT; postsegregational 93.1 0.068 2.3E-06 54.3 4.5 26 178-203 31-56 (253)
349 1j8m_F SRP54, signal recogniti 93.1 0.18 6E-06 52.4 7.7 89 179-270 98-189 (297)
350 2grj_A Dephospho-COA kinase; T 93.1 0.053 1.8E-06 52.3 3.5 26 178-203 11-36 (192)
351 3tlx_A Adenylate kinase 2; str 93.0 0.1 3.5E-06 52.5 5.7 26 178-203 28-53 (243)
352 2vli_A Antibiotic resistance p 93.0 0.037 1.3E-06 53.0 2.3 25 179-203 5-29 (183)
353 2pbr_A DTMP kinase, thymidylat 93.0 0.053 1.8E-06 52.4 3.4 23 181-203 2-24 (195)
354 3ney_A 55 kDa erythrocyte memb 93.0 0.056 1.9E-06 52.1 3.5 26 178-203 18-43 (197)
355 1ex7_A Guanylate kinase; subst 92.9 0.047 1.6E-06 52.2 2.9 24 180-203 2-25 (186)
356 1ls1_A Signal recognition part 92.9 0.23 8E-06 51.5 8.5 88 179-270 98-189 (295)
357 1htw_A HI0065; nucleotide-bind 92.9 0.062 2.1E-06 50.0 3.6 27 177-203 31-57 (158)
358 1uj2_A Uridine-cytidine kinase 92.9 0.06 2.1E-06 54.7 3.9 26 178-203 21-46 (252)
359 2yhs_A FTSY, cell division pro 92.9 0.35 1.2E-05 53.3 10.1 26 178-203 292-317 (503)
360 1znw_A Guanylate kinase, GMP k 92.9 0.056 1.9E-06 53.0 3.5 26 178-203 19-44 (207)
361 2wwf_A Thymidilate kinase, put 92.8 0.063 2.1E-06 52.7 3.7 25 179-203 10-34 (212)
362 2j37_W Signal recognition part 92.8 0.63 2.2E-05 51.9 12.1 26 178-203 100-125 (504)
363 1zd8_A GTP:AMP phosphotransfer 92.7 0.059 2E-06 53.7 3.5 25 179-203 7-31 (227)
364 3fb4_A Adenylate kinase; psych 92.7 0.06 2.1E-06 53.1 3.4 23 181-203 2-24 (216)
365 3aez_A Pantothenate kinase; tr 92.7 0.069 2.4E-06 56.0 4.0 27 177-203 88-114 (312)
366 1aky_A Adenylate kinase; ATP:A 92.6 0.067 2.3E-06 53.0 3.7 25 179-203 4-28 (220)
367 1nn5_A Similar to deoxythymidy 92.6 0.069 2.4E-06 52.6 3.7 25 179-203 9-33 (215)
368 4a1f_A DNAB helicase, replicat 92.6 0.25 8.6E-06 52.0 8.2 53 178-235 45-97 (338)
369 2jeo_A Uridine-cytidine kinase 92.6 0.075 2.5E-06 53.7 4.0 26 178-203 24-49 (245)
370 3dl0_A Adenylate kinase; phosp 92.6 0.065 2.2E-06 52.9 3.5 23 181-203 2-24 (216)
371 4e22_A Cytidylate kinase; P-lo 92.6 0.064 2.2E-06 54.4 3.5 26 178-203 26-51 (252)
372 2z0h_A DTMP kinase, thymidylat 92.6 0.067 2.3E-06 51.8 3.5 23 181-203 2-24 (197)
373 1z6g_A Guanylate kinase; struc 92.5 0.055 1.9E-06 53.6 2.9 26 178-203 22-47 (218)
374 1gtv_A TMK, thymidylate kinase 92.5 0.038 1.3E-06 54.4 1.7 24 180-203 1-24 (214)
375 2v54_A DTMP kinase, thymidylat 92.5 0.068 2.3E-06 52.1 3.5 25 179-203 4-28 (204)
376 3l0o_A Transcription terminati 92.3 0.3 1E-05 51.7 8.1 53 168-221 163-216 (427)
377 1zak_A Adenylate kinase; ATP:A 92.3 0.068 2.3E-06 53.0 3.2 25 179-203 5-29 (222)
378 1s96_A Guanylate kinase, GMP k 92.3 0.075 2.6E-06 52.5 3.4 26 178-203 15-40 (219)
379 2pez_A Bifunctional 3'-phospho 92.3 0.081 2.8E-06 50.4 3.6 25 179-203 5-29 (179)
380 3mfy_A V-type ATP synthase alp 92.2 0.29 1E-05 54.2 8.3 57 170-231 217-275 (588)
381 3sr0_A Adenylate kinase; phosp 92.1 0.08 2.7E-06 51.7 3.4 23 181-203 2-24 (206)
382 1m7g_A Adenylylsulfate kinase; 92.1 0.083 2.8E-06 51.9 3.6 27 177-203 23-49 (211)
383 3vr4_D V-type sodium ATPase su 92.1 0.11 3.7E-06 56.5 4.6 101 170-271 141-258 (465)
384 2i3b_A HCR-ntpase, human cance 92.1 0.069 2.4E-06 51.3 2.9 24 180-203 2-25 (189)
385 1rj9_A FTSY, signal recognitio 92.1 0.085 2.9E-06 55.0 3.7 26 178-203 101-126 (304)
386 2f1r_A Molybdopterin-guanine d 92.1 0.057 2E-06 50.9 2.2 25 179-203 2-26 (171)
387 1vht_A Dephospho-COA kinase; s 91.9 0.096 3.3E-06 51.7 3.8 23 179-201 4-26 (218)
388 1np6_A Molybdopterin-guanine d 91.9 0.1 3.5E-06 49.3 3.7 26 178-203 5-30 (174)
389 3k1j_A LON protease, ATP-depen 91.9 0.1 3.5E-06 60.5 4.5 44 158-203 41-84 (604)
390 3nwj_A ATSK2; P loop, shikimat 91.9 0.074 2.5E-06 53.7 2.9 25 179-203 48-72 (250)
391 3be4_A Adenylate kinase; malar 91.8 0.09 3.1E-06 51.9 3.4 24 180-203 6-29 (217)
392 3p32_A Probable GTPase RV1496/ 91.8 0.18 6.1E-06 54.0 6.0 37 167-203 65-103 (355)
393 1e4v_A Adenylate kinase; trans 91.7 0.093 3.2E-06 51.7 3.4 23 181-203 2-24 (214)
394 3r20_A Cytidylate kinase; stru 91.7 0.095 3.2E-06 52.1 3.4 25 179-203 9-33 (233)
395 2f6r_A COA synthase, bifunctio 91.7 0.1 3.5E-06 53.9 3.8 24 178-201 74-97 (281)
396 2xb4_A Adenylate kinase; ATP-b 91.7 0.094 3.2E-06 52.0 3.4 23 181-203 2-24 (223)
397 3d3q_A TRNA delta(2)-isopenten 91.7 0.1 3.4E-06 54.9 3.7 24 180-203 8-31 (340)
398 3ake_A Cytidylate kinase; CMP 91.6 0.096 3.3E-06 51.2 3.4 24 180-203 3-26 (208)
399 2ehv_A Hypothetical protein PH 91.6 0.089 3.1E-06 53.1 3.3 24 178-201 29-52 (251)
400 2onk_A Molybdate/tungstate ABC 91.6 0.099 3.4E-06 52.4 3.5 26 177-203 23-48 (240)
401 3b9q_A Chloroplast SRP recepto 91.4 0.11 3.9E-06 54.0 3.9 26 178-203 99-124 (302)
402 3oaa_A ATP synthase subunit al 91.4 0.77 2.6E-05 50.3 10.4 97 170-271 152-264 (513)
403 1sq5_A Pantothenate kinase; P- 91.3 0.12 4.1E-06 54.2 4.0 26 178-203 79-104 (308)
404 3lnc_A Guanylate kinase, GMP k 91.3 0.071 2.4E-06 53.3 2.1 25 179-203 27-52 (231)
405 1ak2_A Adenylate kinase isoenz 91.3 0.12 4E-06 51.8 3.7 25 179-203 16-40 (233)
406 2pcj_A ABC transporter, lipopr 91.1 0.094 3.2E-06 52.0 2.8 26 178-203 29-54 (224)
407 3tif_A Uncharacterized ABC tra 91.1 0.11 3.6E-06 52.1 3.1 26 178-203 30-55 (235)
408 3crm_A TRNA delta(2)-isopenten 91.1 0.12 4.2E-06 53.9 3.7 25 179-203 5-29 (323)
409 3gfo_A Cobalt import ATP-bindi 91.0 0.14 4.9E-06 52.3 4.1 26 178-203 33-58 (275)
410 3b85_A Phosphate starvation-in 90.9 0.091 3.1E-06 51.4 2.4 24 179-202 22-45 (208)
411 3end_A Light-independent proto 90.9 0.13 4.6E-06 53.8 3.9 41 177-220 39-79 (307)
412 3vr4_A V-type sodium ATPase ca 90.9 0.35 1.2E-05 53.8 7.2 57 170-231 222-280 (600)
413 3exa_A TRNA delta(2)-isopenten 90.9 0.15 5E-06 52.7 3.9 25 179-203 3-27 (322)
414 1oix_A RAS-related protein RAB 90.8 0.13 4.5E-06 49.5 3.4 25 179-203 29-53 (191)
415 3a8t_A Adenylate isopentenyltr 90.8 0.14 4.8E-06 53.6 3.7 26 178-203 39-64 (339)
416 1pgv_A TMD-1, tropomodulin TMD 90.8 0.2 6.9E-06 48.1 4.5 86 560-646 37-135 (197)
417 2cbz_A Multidrug resistance-as 90.6 0.11 3.8E-06 52.0 2.8 26 178-203 30-55 (237)
418 4eaq_A DTMP kinase, thymidylat 90.6 0.25 8.4E-06 49.2 5.3 26 178-203 25-50 (229)
419 3cmu_A Protein RECA, recombina 90.6 0.54 1.9E-05 60.7 9.5 86 178-271 382-471 (2050)
420 1b0u_A Histidine permease; ABC 90.5 0.11 3.9E-06 52.8 2.8 26 178-203 31-56 (262)
421 2d2e_A SUFC protein; ABC-ATPas 90.5 0.14 4.7E-06 51.8 3.3 25 178-202 28-52 (250)
422 1cr0_A DNA primase/helicase; R 90.5 0.27 9.2E-06 51.1 5.8 53 178-234 34-86 (296)
423 2og2_A Putative signal recogni 90.5 0.16 5.4E-06 54.1 3.9 26 178-203 156-181 (359)
424 1yrb_A ATP(GTP)binding protein 90.4 0.16 5.5E-06 51.7 3.9 26 178-203 13-38 (262)
425 1ji0_A ABC transporter; ATP bi 90.4 0.12 4.2E-06 51.8 2.8 26 178-203 31-56 (240)
426 1ltq_A Polynucleotide kinase; 90.4 0.15 5.1E-06 53.3 3.6 23 180-202 3-25 (301)
427 2zu0_C Probable ATP-dependent 90.3 0.14 4.9E-06 52.2 3.3 25 178-202 45-69 (267)
428 2dyk_A GTP-binding protein; GT 90.3 0.17 5.8E-06 46.7 3.6 24 180-203 2-25 (161)
429 4g1u_C Hemin import ATP-bindin 90.3 0.12 4.2E-06 52.6 2.8 26 178-203 36-61 (266)
430 1sgw_A Putative ABC transporte 90.3 0.11 3.6E-06 51.1 2.2 26 178-203 34-59 (214)
431 2qe7_A ATP synthase subunit al 90.3 0.62 2.1E-05 51.2 8.4 97 170-271 152-264 (502)
432 1g6h_A High-affinity branched- 90.3 0.12 4.3E-06 52.4 2.8 26 178-203 32-57 (257)
433 2pze_A Cystic fibrosis transme 90.3 0.13 4.3E-06 51.3 2.8 26 178-203 33-58 (229)
434 2olj_A Amino acid ABC transpor 90.3 0.13 4.3E-06 52.4 2.8 26 178-203 49-74 (263)
435 2eyu_A Twitching motility prot 90.2 0.16 5.6E-06 51.6 3.6 27 177-203 23-49 (261)
436 2v9p_A Replication protein E1; 90.2 0.15 5.2E-06 52.8 3.4 27 177-203 124-150 (305)
437 2ixe_A Antigen peptide transpo 90.2 0.19 6.5E-06 51.4 4.1 26 178-203 44-69 (271)
438 1mv5_A LMRA, multidrug resista 90.2 0.14 4.6E-06 51.6 2.9 26 178-203 27-52 (243)
439 2f9l_A RAB11B, member RAS onco 90.2 0.16 5.6E-06 49.1 3.4 24 180-203 6-29 (199)
440 3gqb_B V-type ATP synthase bet 90.1 0.21 7E-06 54.3 4.4 101 170-271 137-261 (464)
441 2ff7_A Alpha-hemolysin translo 90.1 0.13 4.6E-06 51.8 2.8 26 178-203 34-59 (247)
442 3foz_A TRNA delta(2)-isopenten 90.1 0.18 6E-06 52.0 3.7 26 178-203 9-34 (316)
443 1vpl_A ABC transporter, ATP-bi 90.1 0.13 4.6E-06 52.0 2.8 26 178-203 40-65 (256)
444 3cmw_A Protein RECA, recombina 90.1 0.47 1.6E-05 60.5 8.2 87 178-272 382-472 (1706)
445 1zu4_A FTSY; GTPase, signal re 90.1 0.18 6.3E-06 52.9 3.9 26 178-203 104-129 (320)
446 1a7j_A Phosphoribulokinase; tr 90.0 0.09 3.1E-06 54.5 1.5 26 178-203 4-29 (290)
447 2wji_A Ferrous iron transport 90.0 0.16 5.4E-06 47.5 3.1 23 180-202 4-26 (165)
448 1pgv_A TMD-1, tropomodulin TMD 90.0 0.27 9.2E-06 47.2 4.7 63 587-650 39-111 (197)
449 2r9v_A ATP synthase subunit al 89.8 0.53 1.8E-05 51.8 7.3 97 170-271 165-277 (515)
450 2qi9_C Vitamin B12 import ATP- 89.8 0.15 5E-06 51.5 2.8 26 178-203 25-50 (249)
451 2ghi_A Transport protein; mult 89.8 0.15 5E-06 51.9 2.8 26 178-203 45-70 (260)
452 3sop_A Neuronal-specific septi 89.7 0.18 6.1E-06 51.6 3.4 23 181-203 4-26 (270)
453 2ce2_X GTPase HRAS; signaling 89.7 0.18 6E-06 46.8 3.2 23 181-203 5-27 (166)
454 2nq2_C Hypothetical ABC transp 89.6 0.15 5.2E-06 51.6 2.8 26 178-203 30-55 (253)
455 2yz2_A Putative ABC transporte 89.6 0.15 5.2E-06 52.0 2.8 26 178-203 32-57 (266)
456 3iqw_A Tail-anchored protein t 89.6 0.43 1.5E-05 50.3 6.4 47 174-223 11-57 (334)
457 3zvl_A Bifunctional polynucleo 89.6 0.17 5.8E-06 55.5 3.4 27 177-203 256-282 (416)
458 1tq4_A IIGP1, interferon-induc 89.6 0.26 8.8E-06 53.5 4.7 25 178-202 68-92 (413)
459 2ocp_A DGK, deoxyguanosine kin 89.6 0.22 7.4E-06 50.1 3.9 25 179-203 2-26 (241)
460 2q6t_A DNAB replication FORK h 89.5 1.1 3.9E-05 49.4 10.1 53 178-234 199-251 (444)
461 2ihy_A ABC transporter, ATP-bi 89.5 0.15 5.2E-06 52.3 2.8 26 178-203 46-71 (279)
462 1q3t_A Cytidylate kinase; nucl 89.5 0.22 7.4E-06 49.9 3.8 26 178-203 15-40 (236)
463 1nlf_A Regulatory protein REPA 89.4 0.18 6.3E-06 51.9 3.2 26 178-203 29-54 (279)
464 2ged_A SR-beta, signal recogni 89.3 0.37 1.3E-05 46.2 5.3 26 178-203 47-72 (193)
465 3io3_A DEHA2D07832P; chaperone 89.3 0.38 1.3E-05 51.1 5.7 45 176-221 15-59 (348)
466 2zej_A Dardarin, leucine-rich 89.3 0.14 4.9E-06 48.8 2.3 22 181-202 4-25 (184)
467 1z2a_A RAS-related protein RAB 89.3 0.19 6.7E-06 46.7 3.1 24 180-203 6-29 (168)
468 1p9r_A General secretion pathw 89.3 0.35 1.2E-05 52.7 5.5 29 175-203 163-191 (418)
469 2qmh_A HPR kinase/phosphorylas 89.3 0.19 6.5E-06 48.1 2.9 25 179-203 34-58 (205)
470 1zj6_A ADP-ribosylation factor 89.2 0.35 1.2E-05 46.1 5.0 34 168-202 6-39 (187)
471 1g8f_A Sulfate adenylyltransfe 89.2 0.31 1E-05 54.4 5.0 43 161-203 375-419 (511)
472 1svm_A Large T antigen; AAA+ f 89.1 0.22 7.7E-06 53.4 3.8 27 177-203 167-193 (377)
473 2vp4_A Deoxynucleoside kinase; 89.1 0.14 4.9E-06 51.0 2.1 25 178-202 19-43 (230)
474 2wjg_A FEOB, ferrous iron tran 89.1 0.21 7.3E-06 47.6 3.3 23 180-202 8-30 (188)
475 3f9v_A Minichromosome maintena 89.0 0.12 4E-06 59.6 1.5 46 158-203 295-351 (595)
476 3con_A GTPase NRAS; structural 88.9 0.21 7.2E-06 47.8 3.2 24 180-203 22-45 (190)
477 3cmw_A Protein RECA, recombina 88.9 0.64 2.2E-05 59.3 8.2 84 179-270 1431-1518(1706)
478 3gmt_A Adenylate kinase; ssgci 88.9 0.22 7.4E-06 49.2 3.2 24 180-203 9-32 (230)
479 3upu_A ATP-dependent DNA helic 88.9 0.34 1.2E-05 53.9 5.3 38 165-203 32-69 (459)
480 1q57_A DNA primase/helicase; d 88.9 1.1 3.7E-05 50.5 9.4 53 178-234 241-293 (503)
481 3lv8_A DTMP kinase, thymidylat 88.9 0.42 1.4E-05 47.5 5.3 35 179-215 27-61 (236)
482 2r8r_A Sensor protein; KDPD, P 88.8 0.3 1E-05 47.8 4.1 24 180-203 7-30 (228)
483 4gzl_A RAS-related C3 botulinu 88.8 0.25 8.6E-06 48.0 3.7 38 166-203 17-54 (204)
484 1u8z_A RAS-related protein RAL 88.7 0.23 7.8E-06 46.1 3.2 24 180-203 5-28 (168)
485 2pjz_A Hypothetical protein ST 88.7 0.19 6.6E-06 51.0 2.8 24 179-202 30-53 (263)
486 1u0j_A DNA replication protein 88.7 0.44 1.5E-05 48.0 5.3 36 168-203 91-128 (267)
487 3jvv_A Twitching mobility prot 88.6 0.35 1.2E-05 51.5 4.8 112 177-303 121-234 (356)
488 4hlc_A DTMP kinase, thymidylat 88.6 0.43 1.5E-05 46.4 5.1 24 180-203 3-26 (205)
489 1fx0_A ATP synthase alpha chai 88.5 0.58 2E-05 51.5 6.5 89 178-271 162-265 (507)
490 2c61_A A-type ATP synthase non 88.5 0.36 1.2E-05 52.8 4.9 101 170-271 142-259 (469)
491 4tmk_A Protein (thymidylate ki 88.5 0.5 1.7E-05 46.2 5.5 24 180-203 4-27 (213)
492 1cp2_A CP2, nitrogenase iron p 88.4 0.44 1.5E-05 48.6 5.3 38 180-220 2-39 (269)
493 4edh_A DTMP kinase, thymidylat 88.4 0.61 2.1E-05 45.6 6.1 32 179-212 6-37 (213)
494 3fvq_A Fe(3+) IONS import ATP- 88.4 0.24 8.1E-06 52.6 3.3 26 178-203 29-54 (359)
495 3eph_A TRNA isopentenyltransfe 88.4 0.26 8.7E-06 52.9 3.5 24 180-203 3-26 (409)
496 2nzj_A GTP-binding protein REM 88.3 0.21 7.3E-06 46.8 2.7 24 180-203 5-28 (175)
497 1c1y_A RAS-related protein RAP 88.3 0.25 8.5E-06 45.9 3.1 23 181-203 5-27 (167)
498 1m7b_A RND3/RHOE small GTP-bin 88.3 0.25 8.4E-06 47.1 3.2 25 179-203 7-31 (184)
499 2ck3_A ATP synthase subunit al 88.3 0.78 2.7E-05 50.5 7.3 101 170-271 152-272 (510)
500 1z08_A RAS-related protein RAB 88.3 0.25 8.5E-06 46.1 3.1 24 180-203 7-30 (170)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=4.9e-49 Score=457.58 Aligned_cols=310 Identities=14% Similarity=0.139 Sum_probs=254.2
Q ss_pred cchHHHHHHHHHHHhcC---CceEEEEEcCCCCcHHHHHHHHHH--hcccCCCCCCEEEEEEecCCC--CHHHHHHHHHH
Q 037222 161 VGLQSQLEQVWRCLVEE---SVGIIGLYGMGGVGKTTLLTHINN--KFLESPTNFDCVIWVVVSKDL--RLEKIQDDIGK 233 (904)
Q Consensus 161 vGr~~~~~~l~~~L~~~---~~~vi~I~G~gGiGKTtLa~~v~~--~~~~~~~~f~~~~wv~vs~~~--~~~~~~~~i~~ 233 (904)
|||+.++++|.++|..+ ..++|+|+||||+||||||+++|+ +. ++..+|+.++||++++.+ ++..++..|++
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~-~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~ 209 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQ-LIGINYDSIVWLKDSGTAPKSTFDLFTDILL 209 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSS-TBTTTBSEEEEEECCCCSTTHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhH-HHhccCCcEEEEEECCCCCCCHHHHHHHHHH
Confidence 59999999999999754 689999999999999999999998 44 568899999999999985 89999999999
Q ss_pred HhCCCCC-----CCCCCCHHHHHHHHHHHHcCC-cEEEEecccccccccccccCCCCCCCCCCcEEEEEecchhhhcccc
Q 037222 234 KIGLSDD-----SWKNKSFEEKAVDILRSLGEK-RFVLLLDDLWERVDLTKVGVPLPGPQNTTSKVVFATRFIDVCGSME 307 (904)
Q Consensus 234 ~l~~~~~-----~~~~~~~~~~~~~l~~~l~~~-r~LlVlDdv~~~~~~~~~~~~l~~~~~~gs~IivTtR~~~v~~~~~ 307 (904)
+++.... .....+.+.+...+++.|+++ ||||||||||+..++ . ++ ..+||+||||||+..++..++
T Consensus 210 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~----~~--~~~gs~ilvTTR~~~v~~~~~ 282 (549)
T 2a5y_B 210 MLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-R----WA--QELRLRCLVTTRDVEISNAAS 282 (549)
T ss_dssp HHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-H----HH--HHTTCEEEEEESBGGGGGGCC
T ss_pred HHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-c----cc--ccCCCEEEEEcCCHHHHHHcC
Confidence 9976421 112345677889999999996 999999999997654 1 11 126899999999999998876
Q ss_pred -CCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHHHHHHHHHhcCCCHHHHHHHHHHHhhch
Q 037222 308 -ADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLALITIGRAMACKRTAEEWIHAVEVLRRSA 386 (904)
Q Consensus 308 -~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~~~~~l~~~~ 386 (904)
....|+|++|+.+|||+||.+.++... .++.+++++++|+++|+|+||||+++|+.++.+ . |+.+ +.+....
T Consensus 283 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~---w~~~-~~l~~~l 355 (549)
T 2a5y_B 283 QTCEFIEVTSLEIDECYDFLEAYGMPMP--VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T---FEKM-AQLNNKL 355 (549)
T ss_dssp SCEEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S---HHHH-HHHHHHH
T ss_pred CCCeEEECCCCCHHHHHHHHHHHhcCCC--CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h---HHHH-HHhHHHh
Confidence 446799999999999999999987653 247788999999999999999999999998764 2 5543 4555443
Q ss_pred hccCCchhhhHhhHhhcccCCCchhhhHHHh-----------HhcCCCCCcccchHHHHHHHHhc--CCccCcc-hhcHH
Q 037222 387 FEFAGLGKEVYPLLKFSYDSLQNETIRSCFL-----------YCCLYPEDYGILKWDLIDCWIGE--GFLEESD-RFSAE 452 (904)
Q Consensus 387 ~~~~~~~~~v~~~l~~sy~~L~~~~~k~cfl-----------~~~~fp~~~~i~~~~li~~w~a~--g~i~~~~-~~~~~ 452 (904)
+... .+++..++.+||++||+ ++|.||+ |||+||+++.|+ +++|+|+ ||+...+ ..+.+
T Consensus 356 ~~~~--~~~i~~~l~~Sy~~L~~-~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~ 428 (549)
T 2a5y_B 356 ESRG--LVGVECITPYSYKSLAM-ALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDD 428 (549)
T ss_dssp HHHC--SSTTCCCSSSSSSSHHH-HHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTH
T ss_pred hccc--HHHHHHHHhcccccccH-HHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHH
Confidence 3322 24789999999999999 8999999 999999999999 8999999 9998744 56677
Q ss_pred HHHHHHHHHHHHhcccccc---cCCeeehhhHHHHHHHHHHhhh
Q 037222 453 NQGYYIVGTLIHACLLEGI---EDDRVKMHDVVRDMALWIACEI 493 (904)
Q Consensus 453 ~~~~~~~~~L~~~~ll~~~---~~~~~~mHdlv~d~a~~i~~~~ 493 (904)
+.++ ||++|+++||+++. ...+|+|||+||++|++++.+.
T Consensus 429 ~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~ 471 (549)
T 2a5y_B 429 EVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQ 471 (549)
T ss_dssp HHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTH
T ss_pred HHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHH
Confidence 7777 99999999999986 3468999999999999888654
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1.4e-39 Score=379.21 Aligned_cols=285 Identities=16% Similarity=0.200 Sum_probs=231.0
Q ss_pred cccchHHHHHHHHHHHhc-CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCE-EEEEEecCCCCHHHHHHHHHHHhC
Q 037222 159 TVVGLQSQLEQVWRCLVE-ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDC-VIWVVVSKDLRLEKIQDDIGKKIG 236 (904)
Q Consensus 159 ~~vGr~~~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~-~~wv~vs~~~~~~~~~~~i~~~l~ 236 (904)
..|||+.++++|.++|.+ +..++|+|+||||+||||||+++|++. ++..+|+. ++|+++++.++...++..|++.++
T Consensus 129 ~~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~-rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~ 207 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY-KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHC-HHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhh-HHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 459999999999999986 568999999999999999999999876 55678986 999999999999888888877543
Q ss_pred CCC---C-CCC-----CCCHHHHHHHHHHHH---cCCcEEEEecccccccccccccCCCCCCCCCCcEEEEEecchhhhc
Q 037222 237 LSD---D-SWK-----NKSFEEKAVDILRSL---GEKRFVLLLDDLWERVDLTKVGVPLPGPQNTTSKVVFATRFIDVCG 304 (904)
Q Consensus 237 ~~~---~-~~~-----~~~~~~~~~~l~~~l---~~~r~LlVlDdv~~~~~~~~~~~~l~~~~~~gs~IivTtR~~~v~~ 304 (904)
... . ... ..+.+.....+++.| .++|+||||||||+...|+.+. .||+||||||+..++.
T Consensus 208 ~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~--------pGSRILVTTRd~~Va~ 279 (1221)
T 1vt4_I 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN--------LSCKILLTTRFKQVTD 279 (1221)
T ss_dssp HHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH--------SSCCEEEECSCSHHHH
T ss_pred hcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC--------CCeEEEEeccChHHHH
Confidence 211 0 000 112345566777766 6899999999999988887642 5899999999999886
Q ss_pred cccCCceeecc------cCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHHHHHHHHHhcCC-CHHHHHH
Q 037222 305 SMEADRKFLVA------CLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLALITIGRAMACKR-TAEEWIH 377 (904)
Q Consensus 305 ~~~~~~~~~l~------~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~-~~~~w~~ 377 (904)
.+.....|.++ +|+.+|||+||++.++.. ..++..+| |+|+||||+++|+.|+.+. +.++|+.
T Consensus 280 ~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-------~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~ 349 (1221)
T 1vt4_I 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-------PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKH 349 (1221)
T ss_dssp HHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC-------TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHH
T ss_pred hcCCCeEEEecCccccCCcCHHHHHHHHHHHcCCC-------HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhc
Confidence 55444467777 999999999999985432 12233333 9999999999999999863 6788875
Q ss_pred HHHHHhhchhccCCchhhhHhhHhhcccCCCchhh-hHHHhHhcCCCCCcccchHHHHHHHHhcCCccCcchhcHHHHHH
Q 037222 378 AVEVLRRSAFEFAGLGKEVYPLLKFSYDSLQNETI-RSCFLYCCLYPEDYGILKWDLIDCWIGEGFLEESDRFSAENQGY 456 (904)
Q Consensus 378 ~~~~l~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~-k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~ 456 (904)
. ..+.+..++.+||+.||+ +. |.||+|||+||+++.|+++.++.+|+++| ++.++
T Consensus 350 ~-------------~~~~I~aaLelSYd~Lp~-eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----------eedAe 405 (1221)
T 1vt4_I 350 V-------------NCDKLTTIIESSLNVLEP-AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----------KSDVM 405 (1221)
T ss_dssp C-------------SCHHHHHHHHHHHHHSCT-THHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC----------SHHHH
T ss_pred C-------------ChhHHHHHHHHHHHhCCH-HHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC----------HHHHH
Confidence 2 125799999999999999 77 99999999999999999999999999887 13578
Q ss_pred HHHHHHHHhcccccc-cCCeeehhhHHHHHH
Q 037222 457 YIVGTLIHACLLEGI-EDDRVKMHDVVRDMA 486 (904)
Q Consensus 457 ~~~~~L~~~~ll~~~-~~~~~~mHdlv~d~a 486 (904)
.+|++|+++||++.. ...+|+|||++++++
T Consensus 406 ~~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred HHHHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 899999999999986 467899999999965
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=6.9e-37 Score=394.88 Aligned_cols=310 Identities=19% Similarity=0.233 Sum_probs=252.8
Q ss_pred cccccchHHHHHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHHhcccCCC-CCCEEEEEEecCCCC--HHHHHHHH
Q 037222 157 ERTVVGLQSQLEQVWRCLVE--ESVGIIGLYGMGGVGKTTLLTHINNKFLESPT-NFDCVIWVVVSKDLR--LEKIQDDI 231 (904)
Q Consensus 157 ~~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-~f~~~~wv~vs~~~~--~~~~~~~i 231 (904)
...||||++++++|.++|.. ++.++|+|+||||+||||||+++|++...... .|+.++||++++..+ ....+..+
T Consensus 123 ~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 202 (1249)
T 3sfz_A 123 PVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNL 202 (1249)
T ss_dssp CSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHH
T ss_pred CceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHH
Confidence 45799999999999999963 57899999999999999999999988522234 457888999998644 34456777
Q ss_pred HHHhCCCCC--CCCCCCHHHHHHHHHHHHcCC--cEEEEecccccccccccccCCCCCCCCCCcEEEEEecchhhhcc-c
Q 037222 232 GKKIGLSDD--SWKNKSFEEKAVDILRSLGEK--RFVLLLDDLWERVDLTKVGVPLPGPQNTTSKVVFATRFIDVCGS-M 306 (904)
Q Consensus 232 ~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~~--r~LlVlDdv~~~~~~~~~~~~l~~~~~~gs~IivTtR~~~v~~~-~ 306 (904)
+..+..... .....+.+.+...++..+.++ |+||||||||+...|..+ .+|++||||||++.++.. +
T Consensus 203 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~--------~~~~~ilvTtR~~~~~~~~~ 274 (1249)
T 3sfz_A 203 CMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF--------DNQCQILLTTRDKSVTDSVM 274 (1249)
T ss_dssp HHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT--------CSSCEEEEEESSTTTTTTCC
T ss_pred HHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh--------cCCCEEEEEcCCHHHHHhhc
Confidence 777765431 123456788889999999877 999999999988777643 468999999999999854 4
Q ss_pred cCCceeeccc-CCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHHHHHHHHHhcCCCHHHHHHHHHHHhhc
Q 037222 307 EADRKFLVAC-LSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLALITIGRAMACKRTAEEWIHAVEVLRRS 385 (904)
Q Consensus 307 ~~~~~~~l~~-L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~~~~~l~~~ 385 (904)
+....+++.+ |+.+||++||...++... +.+.+++++|+++|+|+||||+++|+.|+.+. ..|...++.+...
T Consensus 275 ~~~~~~~~~~~l~~~~a~~l~~~~~~~~~----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~ 348 (1249)
T 3sfz_A 275 GPKHVVPVESGLGREKGLEILSLFVNMKK----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNK 348 (1249)
T ss_dssp SCBCCEECCSSCCHHHHHHHHHHHHTSCS----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSC
T ss_pred CCceEEEecCCCCHHHHHHHHHHhhCCCh----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhh
Confidence 5667899996 999999999999886432 34456799999999999999999999998754 4699988888766
Q ss_pred hhcc-----CCchhhhHhhHhhcccCCCchhhhHHHhHhcCCCCCcccchHHHHHHHHhcCCccCcchhcHHHHHHHHHH
Q 037222 386 AFEF-----AGLGKEVYPLLKFSYDSLQNETIRSCFLYCCLYPEDYGILKWDLIDCWIGEGFLEESDRFSAENQGYYIVG 460 (904)
Q Consensus 386 ~~~~-----~~~~~~v~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~ 460 (904)
.+.. ....+.+..++.+||+.||+ ++|.||+|||+||+++.|+++.++.+|.++ ++.++.+++
T Consensus 349 ~~~~~~~~~~~~~~~~~~~l~~s~~~L~~-~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-----------~~~~~~~l~ 416 (1249)
T 3sfz_A 349 QFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCVLWDLE-----------TEEVEDILQ 416 (1249)
T ss_dssp CCCCSSCTTCTTHHHHHHHHHHHHHTSCT-TTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-----------HHHHHHHHH
T ss_pred hhhhcccccccchHHHHHHHHHHHHhCCH-HHHHHHHHhCccCCCCeeCHHHHHHHhCCC-----------HHHHHHHHH
Confidence 4321 11124699999999999999 899999999999999999999999999654 467889999
Q ss_pred HHHHhcccccccC---CeeehhhHHHHHHHHHHhh
Q 037222 461 TLIHACLLEGIED---DRVKMHDVVRDMALWIACE 492 (904)
Q Consensus 461 ~L~~~~ll~~~~~---~~~~mHdlv~d~a~~i~~~ 492 (904)
+|+++||++.... .+|+|||+||++|+..+.+
T Consensus 417 ~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~ 451 (1249)
T 3sfz_A 417 EFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRS 451 (1249)
T ss_dssp HHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGG
T ss_pred HHHhccceEEecCCCceEEEecHHHHHHHHhhhhH
Confidence 9999999997633 3699999999999988654
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=1e-34 Score=342.81 Aligned_cols=305 Identities=20% Similarity=0.269 Sum_probs=238.5
Q ss_pred cccccchHHHHHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHHhcccC-CCCC-CEEEEEEecCCCCHHHHHHHH-
Q 037222 157 ERTVVGLQSQLEQVWRCLVE--ESVGIIGLYGMGGVGKTTLLTHINNKFLES-PTNF-DCVIWVVVSKDLRLEKIQDDI- 231 (904)
Q Consensus 157 ~~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~~f-~~~~wv~vs~~~~~~~~~~~i- 231 (904)
++.||||+.++++|.++|.. ++.++|+|+||||+||||||++++++. .. ..+| +.++|+++++. +...++..+
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~-~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~ 200 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDH-SLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQ 200 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCH-HHHHHHCTTCEEEEEEESC-CHHHHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhch-hHHHhhCCCceEEEECCCC-chHHHHHHHH
Confidence 35689999999999999974 467899999999999999999999875 33 5678 58999999876 344444443
Q ss_pred --HHHhCCCC--CCCCCCCHHHHHHHHHHHHcC--CcEEEEecccccccccccccCCCCCCCCCCcEEEEEecchhhhcc
Q 037222 232 --GKKIGLSD--DSWKNKSFEEKAVDILRSLGE--KRFVLLLDDLWERVDLTKVGVPLPGPQNTTSKVVFATRFIDVCGS 305 (904)
Q Consensus 232 --~~~l~~~~--~~~~~~~~~~~~~~l~~~l~~--~r~LlVlDdv~~~~~~~~~~~~l~~~~~~gs~IivTtR~~~v~~~ 305 (904)
+..++... ......+.+.....+...+.+ +++||||||+|+...+..+ ..|++||||||+..++..
T Consensus 201 ~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l--------~~~~~ilvTsR~~~~~~~ 272 (591)
T 1z6t_A 201 NLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF--------DSQCQILLTTRDKSVTDS 272 (591)
T ss_dssp HHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT--------CSSCEEEEEESCGGGGTT
T ss_pred HHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh--------cCCCeEEEECCCcHHHHh
Confidence 44554211 112345677788888888866 7999999999986655432 357999999999988765
Q ss_pred ccCCceeec---ccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHHHHHHHHHhcCCCHHHHHHHHHHH
Q 037222 306 MEADRKFLV---ACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLALITIGRAMACKRTAEEWIHAVEVL 382 (904)
Q Consensus 306 ~~~~~~~~l---~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~~~~~~~w~~~~~~l 382 (904)
+. ...+++ ++|+.+|+++||.+.++... ....+.+++|+++|+|+||||..+|+.++.+. ..|...++.+
T Consensus 273 ~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~l~~l 345 (591)
T 1z6t_A 273 VM-GPKYVVPVESSLGKEKGLEILSLFVNMKK----ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYYLKQL 345 (591)
T ss_dssp CC-SCEEEEECCSSCCHHHHHHHHHHHHTSCG----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHHHHHH
T ss_pred cC-CCceEeecCCCCCHHHHHHHHHHHhCCCc----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHHHHHH
Confidence 43 334444 58999999999999987532 22345788999999999999999999998753 4799888888
Q ss_pred hhchhc-c----CCchhhhHhhHhhcccCCCchhhhHHHhHhcCCCCCcccchHHHHHHHHhcCCccCcchhcHHHHHHH
Q 037222 383 RRSAFE-F----AGLGKEVYPLLKFSYDSLQNETIRSCFLYCCLYPEDYGILKWDLIDCWIGEGFLEESDRFSAENQGYY 457 (904)
Q Consensus 383 ~~~~~~-~----~~~~~~v~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~ 457 (904)
...... + ......+..++..||+.||+ +.|.||++||+||+++.|+.+.++..|.++ .+.+..
T Consensus 346 ~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~-~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-----------~~~~~~ 413 (591)
T 1z6t_A 346 QNKQFKRIRKSSSYDYEALDEAMSISVEMLRE-DIKDYYTDLSILQKDVKVPTKVLCILWDME-----------TEEVED 413 (591)
T ss_dssp HSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCT-TTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-----------HHHHHH
T ss_pred HHhHHHHhhhccccchHHHHHHHHHHHHhCCH-HHHHHHHHccccCCCCccCHHHHHHHhccC-----------HHHHHH
Confidence 765321 1 11224789999999999999 899999999999999999999999999543 245788
Q ss_pred HHHHHHHhcccccc---cCCeeehhhHHHHHHHHHH
Q 037222 458 IVGTLIHACLLEGI---EDDRVKMHDVVRDMALWIA 490 (904)
Q Consensus 458 ~~~~L~~~~ll~~~---~~~~~~mHdlv~d~a~~i~ 490 (904)
++++|+++||++.. ...+|+||++||++++...
T Consensus 414 ~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 414 ILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred HHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 99999999999865 2348999999999999773
No 5
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=5.8e-23 Score=225.56 Aligned_cols=287 Identities=18% Similarity=0.205 Sum_probs=205.0
Q ss_pred ccccceeEEEeeccccccccCCCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccccccccCcE
Q 037222 514 RESENVTRLSLMQNQIKILSEVPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLEL 593 (904)
Q Consensus 514 ~~~~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~ 593 (904)
.....++++++.++.+..++.+..+++|++|+++ ++.+..++. |..+++|++|++++| .++ .+| .++.+++|++
T Consensus 41 ~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~-~n~i~~~~~--~~~l~~L~~L~L~~n-~i~-~~~-~~~~l~~L~~ 114 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASIQGIEYLTNLEYLNLN-GNQITDISP--LSNLVKLTNLYIGTN-KIT-DIS-ALQNLTNLRE 114 (347)
T ss_dssp HHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECC-SSCCCCCGG--GTTCTTCCEEECCSS-CCC-CCG-GGTTCTTCSE
T ss_pred hhcccccEEEEeCCccccchhhhhcCCccEEEcc-CCccccchh--hhcCCcCCEEEccCC-ccc-Cch-HHcCCCcCCE
Confidence 3456788899988888888777888999999998 556777776 788999999999998 888 665 6888999999
Q ss_pred eecccCcccccchhhhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCCcccccCCCCccccCCCccchHhhc
Q 037222 594 FDISRTEIQELPEELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYECFHEAPEDSVLFGGGEVLVQELL 673 (904)
Q Consensus 594 L~l~~~~i~~Lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 673 (904)
|++++|.+..+|. +..+++|++|++++|..+..++. +..+++|++|++.+|.+.. +..+.
T Consensus 115 L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~-----------------~~~~~ 174 (347)
T 4fmz_A 115 LYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKD-----------------VTPIA 174 (347)
T ss_dssp EECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCC-----------------CGGGG
T ss_pred EECcCCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCC-----------------chhhc
Confidence 9999998888876 88889999999998866666665 8889999999998886652 11266
Q ss_pred CCCCCcEEEEEecchhhHHHhhhcccccccceeeEecccCCCcchhhhhhhcccCccCceeecccCCcceeeeccccccc
Q 037222 674 GLKYLEVLELTLGSYQALQIFLSSNKLKSCIRSLFLQLAGDTKSIIDAAAFADLNHLNELYIYEGIELEELKIDYTEIVR 753 (904)
Q Consensus 674 ~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~ 753 (904)
.+++|+.|+++.+....+..+ ..+++|+.|.++++...... .+..+++|++|++++|.... + +. +
T Consensus 175 ~l~~L~~L~l~~n~l~~~~~~----~~l~~L~~L~l~~n~l~~~~----~~~~~~~L~~L~l~~n~l~~-~-~~-~---- 239 (347)
T 4fmz_A 175 NLTDLYSLSLNYNQIEDISPL----ASLTSLHYFTAYVNQITDIT----PVANMTRLNSLKIGNNKITD-L-SP-L---- 239 (347)
T ss_dssp GCTTCSEEECTTSCCCCCGGG----GGCTTCCEEECCSSCCCCCG----GGGGCTTCCEEECCSSCCCC-C-GG-G----
T ss_pred cCCCCCEEEccCCcccccccc----cCCCccceeecccCCCCCCc----hhhcCCcCCEEEccCCccCC-C-cc-h----
Confidence 778888888776654443331 22467788888776433221 26677888888888775332 1 11 1
Q ss_pred cccCCcccCCccEEeEeccCCCCcCcccccCCCccEEeEecCccchhhcccCcccCCccccCCCCCCCcccEeecccccc
Q 037222 754 KRREPFVFRSLHRVTIFSCGKLKDVTFLVFAPNLKSLELLQCDAMEEIISVGEIAETPEMMGHISPFENLQSLHLSYLPI 833 (904)
Q Consensus 754 ~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 833 (904)
..+++|+.|++++| .+..++.+..+++|+.|++++|. ++.+. .+..+++|+.|++++|.
T Consensus 240 -----~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~~-------------~~~~l~~L~~L~L~~n~- 298 (347)
T 4fmz_A 240 -----ANLSQLTWLEIGTN-QISDINAVKDLTKLKMLNVGSNQ-ISDIS-------------VLNNLSQLNSLFLNNNQ- 298 (347)
T ss_dssp -----TTCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCCCG-------------GGGGCTTCSEEECCSSC-
T ss_pred -----hcCCCCCEEECCCC-ccCCChhHhcCCCcCEEEccCCc-cCCCh-------------hhcCCCCCCEEECcCCc-
Confidence 36778888888887 55666667778888888887763 33331 25567788888888775
Q ss_pred ccccc-CCCCCCCCcceEeeccCCCCCCCCC
Q 037222 834 LRSIY-WKPLPFTHLKKMEVRRCDQLRRLPL 863 (904)
Q Consensus 834 L~~i~-~~~~~~~~L~~L~i~~C~~L~~lp~ 863 (904)
+.... .....+++|+.|++++|+ ++.+|.
T Consensus 299 l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~ 328 (347)
T 4fmz_A 299 LGNEDMEVIGGLTNLTTLFLSQNH-ITDIRP 328 (347)
T ss_dssp CCGGGHHHHHTCTTCSEEECCSSS-CCCCGG
T ss_pred CCCcChhHhhccccCCEEEccCCc-cccccC
Confidence 44332 233457788888888874 666544
No 6
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=1.3e-22 Score=222.81 Aligned_cols=297 Identities=19% Similarity=0.181 Sum_probs=236.1
Q ss_pred EEEEcCCCcccCcccccccceeEEEeeccccccccCCCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcc
Q 037222 499 FLVCAGAGLEQAPAVRESENVTRLSLMQNQIKILSEVPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFT 578 (904)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~ 578 (904)
.....+..+..++.......+++|++.+|.+..++.+..+++|++|+++ ++.+..++. |..+++|++|++++| .++
T Consensus 48 ~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~-~n~i~~~~~--~~~l~~L~~L~l~~n-~i~ 123 (347)
T 4fmz_A 48 KLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIG-TNKITDISA--LQNLTNLRELYLNED-NIS 123 (347)
T ss_dssp EEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECC-SSCCCCCGG--GTTCTTCSEEECTTS-CCC
T ss_pred EEEEeCCccccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEcc-CCcccCchH--HcCCCcCCEEECcCC-ccc
Confidence 3444555566666666678999999999999988888999999999999 556777764 899999999999999 898
Q ss_pred cccCccccccccCcEeecccCcccccchhhhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCCcccccCCCC
Q 037222 579 FQLPLGMSKLGSLELFDISRTEIQELPEELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYECFHEAPED 658 (904)
Q Consensus 579 ~~lp~~i~~L~~L~~L~l~~~~i~~Lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~ 658 (904)
.+|. +..+++|++|++++|.....+..+..+++|++|++++| .+..++. +..+++|++|++.+|.+..
T Consensus 124 -~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~--~~~l~~L~~L~l~~n~l~~------- 191 (347)
T 4fmz_A 124 -DISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES-KVKDVTP--IANLTDLYSLSLNYNQIED------- 191 (347)
T ss_dssp -CCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECTTSCCCC-------
T ss_pred -Cchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCC-CcCCchh--hccCCCCCEEEccCCcccc-------
Confidence 7776 89999999999999955444556999999999999999 6788876 8899999999999987652
Q ss_pred ccccCCCccchHhhcCCCCCcEEEEEecchhhHHHhhhcccccccceeeEecccCCCcchhhhhhhcccCccCceeeccc
Q 037222 659 SVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQIFLSSNKLKSCIRSLFLQLAGDTKSIIDAAAFADLNHLNELYIYEG 738 (904)
Q Consensus 659 ~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 738 (904)
+..+..+++|+.|++..+....... ...+++|+.|++++|..... . .+..+++|++|++++|
T Consensus 192 ----------~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~~L~~L~l~~n~l~~~-~---~~~~l~~L~~L~l~~n 253 (347)
T 4fmz_A 192 ----------ISPLASLTSLHYFTAYVNQITDITP----VANMTRLNSLKIGNNKITDL-S---PLANLSQLTWLEIGTN 253 (347)
T ss_dssp ----------CGGGGGCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCCC-G---GGTTCTTCCEEECCSS
T ss_pred ----------cccccCCCccceeecccCCCCCCch----hhcCCcCCEEEccCCccCCC-c---chhcCCCCCEEECCCC
Confidence 2227788999999998776554433 22347999999999864332 2 3778999999999998
Q ss_pred CCcceeeeccccccccccCCcccCCccEEeEeccCCCCcCcccccCCCccEEeEecCccchhhcccCcccCCccccCCCC
Q 037222 739 IELEELKIDYTEIVRKRREPFVFRSLHRVTIFSCGKLKDVTFLVFAPNLKSLELLQCDAMEEIISVGEIAETPEMMGHIS 818 (904)
Q Consensus 739 ~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~ 818 (904)
.... +..+ ..+++|+.|++++| .+..++.+..+++|+.|++++|......+. .+.
T Consensus 254 ~l~~---~~~~---------~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~------------~l~ 308 (347)
T 4fmz_A 254 QISD---INAV---------KDLTKLKMLNVGSN-QISDISVLNNLSQLNSLFLNNNQLGNEDME------------VIG 308 (347)
T ss_dssp CCCC---CGGG---------TTCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCCCGGGHH------------HHH
T ss_pred ccCC---ChhH---------hcCCCcCEEEccCC-ccCCChhhcCCCCCCEEECcCCcCCCcChh------------Hhh
Confidence 5433 2222 37899999999999 677788899999999999999864333322 356
Q ss_pred CCCcccEeecccccccccccCCCCCCCCcceEeeccCC
Q 037222 819 PFENLQSLHLSYLPILRSIYWKPLPFTHLKKMEVRRCD 856 (904)
Q Consensus 819 ~~~~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~ 856 (904)
.+++|+.|++++|+ ++.++. ...+++|++|++++|+
T Consensus 309 ~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 309 GLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp TCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSSCC-
T ss_pred ccccCCEEEccCCc-cccccC-hhhhhccceeehhhhc
Confidence 78999999999997 666654 5679999999999974
No 7
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=9e-22 Score=226.05 Aligned_cols=129 Identities=27% Similarity=0.369 Sum_probs=64.7
Q ss_pred cceeEEEeecccccccc--CCCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCcc-ccccccCcE
Q 037222 517 ENVTRLSLMQNQIKILS--EVPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLG-MSKLGSLEL 593 (904)
Q Consensus 517 ~~~r~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~-i~~L~~L~~ 593 (904)
..++.|++++|.+..++ .+..+++|++|+++ ++.+..+++..|.++++|++|+|++| .++ .+|.. ++++++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~-~~~~~~~~~l~~L~~ 108 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELN-ENIVSAVEPGAFNNLFNLRTLGLRSN-RLK-LIPLGVFTGLSNLTK 108 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECT-TSCCCEECTTTTTTCTTCCEEECCSS-CCC-SCCTTSSTTCTTCCE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECC-CCccCEeChhhhhCCccCCEEECCCC-cCC-ccCcccccCCCCCCE
Confidence 34555555555554442 23455555555555 33344444444555555555555555 555 44432 445555555
Q ss_pred eecccCccccc-chhhhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCC
Q 037222 594 FDISRTEIQEL-PEELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGY 649 (904)
Q Consensus 594 L~l~~~~i~~L-p~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~ 649 (904)
|++++|.+..+ |..+..+++|++|++++| .+..++...+.++++|++|++.+|.+
T Consensus 109 L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l 164 (477)
T 2id5_A 109 LDISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLEKCNL 164 (477)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEEECCT-TCCEECTTSSTTCTTCCEEEEESCCC
T ss_pred EECCCCccccCChhHccccccCCEEECCCC-ccceeChhhccCCCCCCEEECCCCcC
Confidence 55555555443 334455555555555555 34444433355555555555555544
No 8
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=4.2e-22 Score=222.31 Aligned_cols=292 Identities=14% Similarity=0.157 Sum_probs=214.4
Q ss_pred cccceeEEEeeccccccccC--CCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccccccccCc
Q 037222 515 ESENVTRLSLMQNQIKILSE--VPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLE 592 (904)
Q Consensus 515 ~~~~~r~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~ 592 (904)
....++.+++.++.+..++. +..+++|++|+++ ++.+..+++..|..+++|++|++++| .++...|..++.+++|+
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~-~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN-DLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECT-TSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECC-CCcccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCC
Confidence 34678899999998888876 4678999999999 55688888777899999999999999 88834456688999999
Q ss_pred EeecccCcccccchhh-hcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCCcccccCCCCccccCCCccchHh
Q 037222 593 LFDISRTEIQELPEEL-KLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYECFHEAPEDSVLFGGGEVLVQE 671 (904)
Q Consensus 593 ~L~l~~~~i~~Lp~~~-~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (904)
+|++++|.+..+|..+ ..+++|++|++++| .+..++...+.++++|++|++.+|.+... .
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------------------~ 181 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHV------------------D 181 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSSCCSBC------------------C
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCC-ccCccChhhccCCCCCCEEECCCCcCCcc------------------c
Confidence 9999999999998875 88999999999998 67788766688999999999998877532 1
Q ss_pred hcCCCCCcEEEEEecchhhHHHhhhcccccccceeeEecccCCCcchhhhhhhcccCccCceeecccCCcceeeeccccc
Q 037222 672 LLGLKYLEVLELTLGSYQALQIFLSSNKLKSCIRSLFLQLAGDTKSIIDAAAFADLNHLNELYIYEGIELEELKIDYTEI 751 (904)
Q Consensus 672 l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~ 751 (904)
+..+++|+.|+++.+....+ ...++|+.|+++++..... . ....++|+.|++++|.... +.++
T Consensus 182 ~~~l~~L~~L~l~~n~l~~~-------~~~~~L~~L~l~~n~l~~~-~----~~~~~~L~~L~l~~n~l~~---~~~l-- 244 (390)
T 3o6n_A 182 LSLIPSLFHANVSYNLLSTL-------AIPIAVEELDASHNSINVV-R----GPVNVELTILKLQHNNLTD---TAWL-- 244 (390)
T ss_dssp GGGCTTCSEEECCSSCCSEE-------ECCSSCSEEECCSSCCCEE-E----CCCCSSCCEEECCSSCCCC---CGGG--
T ss_pred cccccccceeeccccccccc-------CCCCcceEEECCCCeeeec-c----ccccccccEEECCCCCCcc---cHHH--
Confidence 45677788888775543322 1235788888877653322 1 1234688888888775432 2233
Q ss_pred cccccCCcccCCccEEeEeccCCCCcC-c-ccccCCCccEEeEecCccchhhcccCcccCCccccCCCCCCCcccEeecc
Q 037222 752 VRKRREPFVFRSLHRVTIFSCGKLKDV-T-FLVFAPNLKSLELLQCDAMEEIISVGEIAETPEMMGHISPFENLQSLHLS 829 (904)
Q Consensus 752 ~~~~~~~~~l~~L~~L~L~~c~~l~~l-~-~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~ 829 (904)
..+++|+.|++++|. +..+ + .+..+++|+.|+|++|. ++.++. ....+|+|+.|+|+
T Consensus 245 -------~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~------------~~~~l~~L~~L~L~ 303 (390)
T 3o6n_A 245 -------LNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNR-LVALNL------------YGQPIPTLKVLDLS 303 (390)
T ss_dssp -------GGCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECCSSC-CCEEEC------------SSSCCTTCCEEECC
T ss_pred -------cCCCCccEEECCCCc-CCCcChhHccccccCCEEECCCCc-CcccCc------------ccCCCCCCCEEECC
Confidence 367888888888884 4433 2 47788888888888753 444432 34567888888888
Q ss_pred cccccccccCCCCCCCCcceEeeccCCCCCCCCCCCCc
Q 037222 830 YLPILRSIYWKPLPFTHLKKMEVRRCDQLRRLPLDSNS 867 (904)
Q Consensus 830 ~~~~L~~i~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~ 867 (904)
++. ++.++.....+++|+.|++++| +++.+|.....
T Consensus 304 ~n~-l~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~ 339 (390)
T 3o6n_A 304 HNH-LLHVERNQPQFDRLENLYLDHN-SIVTLKLSTHH 339 (390)
T ss_dssp SSC-CCCCGGGHHHHTTCSEEECCSS-CCCCCCCCTTC
T ss_pred CCc-ceecCccccccCcCCEEECCCC-ccceeCchhhc
Confidence 874 6777665566788888888886 57777755443
No 9
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.88 E-value=7.3e-22 Score=225.47 Aligned_cols=348 Identities=19% Similarity=0.193 Sum_probs=231.3
Q ss_pred EEEcCCCcccCcccccccceeEEEeecccccccc--CCCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCc
Q 037222 500 LVCAGAGLEQAPAVRESENVTRLSLMQNQIKILS--EVPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNF 577 (904)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i 577 (904)
+...+..+..+|. -...+++|++++|.+..+. .+..+++|++|+++++.....+++..|.++++|++|++++| .+
T Consensus 15 ~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n-~l 91 (455)
T 3v47_A 15 AICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-QF 91 (455)
T ss_dssp EECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC-TT
T ss_pred cCcCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC-cc
Confidence 4445566677776 4478999999999998863 36899999999999554334677777999999999999999 88
Q ss_pred ccccCccccccccCcEeecccCcccc-cchh--hhcCCCCcEeecccccccccc-chhhhcCCCCCceeeecccCCcccc
Q 037222 578 TFQLPLGMSKLGSLELFDISRTEIQE-LPEE--LKLLVNLKCLNLRWTSKLIRI-PRQLISNSSGLRVLRMFATGYECFH 653 (904)
Q Consensus 578 ~~~lp~~i~~L~~L~~L~l~~~~i~~-Lp~~--~~~L~~L~~L~l~~~~~l~~l-p~~~i~~L~~L~~L~l~~~~~~~~~ 653 (904)
+...|..++++++|++|++++|.+.. .|.. +..+++|++|++++| .+..+ |...+.++++|++|++.+|.+....
T Consensus 92 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 170 (455)
T 3v47_A 92 LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFNKVKSIC 170 (455)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTTCCBSCCC
T ss_pred CccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCCCCcccccC
Confidence 84568899999999999999999885 4544 889999999999999 66766 5544889999999999999876432
Q ss_pred cCCC-Cc--------cccCCC----------ccchHhhcCCCCCcEEEEEecchhhH-HHhhhcccccccceeeEecccC
Q 037222 654 EAPE-DS--------VLFGGG----------EVLVQELLGLKYLEVLELTLGSYQAL-QIFLSSNKLKSCIRSLFLQLAG 713 (904)
Q Consensus 654 ~~~~-~~--------~~~~~~----------~~~~~~l~~L~~L~~L~l~~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~ 713 (904)
...- .. ...... ......+..+++|+.|+++.+..... ..........++|+.|.++++.
T Consensus 171 ~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 250 (455)
T 3v47_A 171 EEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSY 250 (455)
T ss_dssp TTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCT
T ss_pred hhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccc
Confidence 2110 00 000000 00001122446677777765543221 1111100112467777777653
Q ss_pred CCcchhh--------hhhhc--ccCccCceeecccCCcceeeeccccccccccCCcccCCccEEeEeccCCCCcC-c-cc
Q 037222 714 DTKSIID--------AAAFA--DLNHLNELYIYEGIELEELKIDYTEIVRKRREPFVFRSLHRVTIFSCGKLKDV-T-FL 781 (904)
Q Consensus 714 ~~~~~~~--------~~~l~--~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l-~-~l 781 (904)
....... ...+. .+++|+.|++++|.... +.+.++ ..+++|+.|+|++|. +..+ + .+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~---------~~l~~L~~L~Ls~n~-l~~~~~~~~ 319 (455)
T 3v47_A 251 NMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFA-LLKSVF---------SHFTDLEQLTLAQNE-INKIDDNAF 319 (455)
T ss_dssp TTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCE-ECTTTT---------TTCTTCCEEECTTSC-CCEECTTTT
T ss_pred ccccccchhhhccCcccccccccccCceEEEecCccccc-cchhhc---------ccCCCCCEEECCCCc-ccccChhHh
Confidence 2211000 00111 23678888888775433 233333 368889999999884 4443 3 47
Q ss_pred ccCCCccEEeEecCccchhhcccCcccCCccccCCCCCCCcccEeecccccccccc-cCCCCCCCCcceEeeccCCCCCC
Q 037222 782 VFAPNLKSLELLQCDAMEEIISVGEIAETPEMMGHISPFENLQSLHLSYLPILRSI-YWKPLPFTHLKKMEVRRCDQLRR 860 (904)
Q Consensus 782 ~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i-~~~~~~~~~L~~L~i~~C~~L~~ 860 (904)
..+++|++|+|++|. ++.++. ..+..+++|+.|+|+++. ++.+ +.....+++|+.|++++| +++.
T Consensus 320 ~~l~~L~~L~Ls~N~-l~~~~~-----------~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~ 385 (455)
T 3v47_A 320 WGLTHLLKLNLSQNF-LGSIDS-----------RMFENLDKLEVLDLSYNH-IRALGDQSFLGLPNLKELALDTN-QLKS 385 (455)
T ss_dssp TTCTTCCEEECCSSC-CCEECG-----------GGGTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCSC
T ss_pred cCcccCCEEECCCCc-cCCcCh-----------hHhcCcccCCEEECCCCc-ccccChhhccccccccEEECCCC-cccc
Confidence 788999999998864 344322 145678899999999886 5555 445667899999999885 8888
Q ss_pred CCCCCCccCCCceEEE
Q 037222 861 LPLDSNSATERNVVIR 876 (904)
Q Consensus 861 lp~~~~~~~~~l~~i~ 876 (904)
+|.........+..++
T Consensus 386 ~~~~~~~~l~~L~~L~ 401 (455)
T 3v47_A 386 VPDGIFDRLTSLQKIW 401 (455)
T ss_dssp CCTTTTTTCTTCCEEE
T ss_pred CCHhHhccCCcccEEE
Confidence 8876544445555554
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.88 E-value=1.7e-21 Score=230.97 Aligned_cols=148 Identities=23% Similarity=0.249 Sum_probs=123.8
Q ss_pred EEEcCCCcccCcccccccceeEEEeeccccccccC--CCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCc
Q 037222 500 LVCAGAGLEQAPAVRESENVTRLSLMQNQIKILSE--VPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNF 577 (904)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i 577 (904)
+...+..+..+|.. -...+++|++++|.+..++. +..+++|++|+++ ++.+..+++..|.++++|++|++++| .+
T Consensus 16 ~~c~~~~l~~ip~~-~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls-~n~l~~i~~~~~~~l~~L~~L~Ls~n-~l 92 (606)
T 3vq2_A 16 YQCMDQKLSKVPDD-IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLS-RCEIETIEDKAWHGLHHLSNLILTGN-PI 92 (606)
T ss_dssp EECTTSCCSSCCTT-SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT-TCCCCEECTTTTTTCTTCCEEECTTC-CC
T ss_pred eEccCCCcccCCCC-CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCC-CCcccccCHHHhhchhhcCEeECCCC-cc
Confidence 44456667777753 34789999999999988765 6899999999999 56688887777999999999999999 88
Q ss_pred ccccCccccccccCcEeecccCcccccc-hhhhcCCCCcEeecccccccc--ccchhhhcCCCCCceeeecccCCccc
Q 037222 578 TFQLPLGMSKLGSLELFDISRTEIQELP-EELKLLVNLKCLNLRWTSKLI--RIPRQLISNSSGLRVLRMFATGYECF 652 (904)
Q Consensus 578 ~~~lp~~i~~L~~L~~L~l~~~~i~~Lp-~~~~~L~~L~~L~l~~~~~l~--~lp~~~i~~L~~L~~L~l~~~~~~~~ 652 (904)
+...|..++++++|++|++++|.+..+| ..++++++|++|++++| .+. .+|.. ++++++|++|++.+|.+...
T Consensus 93 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 93 QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN-FIHSCKLPAY-FSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp CCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSS-CCCCCCCCGG-GGTCTTCCEEECCSSCCCEE
T ss_pred cccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCC-cccceechHh-HhhcCCCCEEEccCCcceec
Confidence 8344889999999999999999998887 67899999999999999 566 46775 89999999999999877643
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.88 E-value=3.4e-21 Score=226.78 Aligned_cols=148 Identities=22% Similarity=0.270 Sum_probs=116.3
Q ss_pred EEEEcCCCcccCcccccccceeEEEeecccccccc--CCCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCC
Q 037222 499 FLVCAGAGLEQAPAVRESENVTRLSLMQNQIKILS--EVPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGN 576 (904)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~ 576 (904)
.+.+.+..+..+|. .-...+++|++++|.+..++ .+..+++|++|+++ ++.+..+++..|.++++|++|++++| .
T Consensus 11 ~~~c~~~~l~~ip~-~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls-~n~i~~i~~~~~~~l~~L~~L~L~~n-~ 87 (570)
T 2z63_A 11 TYQCMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLS-RCEIQTIEDGAYQSLSHLSTLILTGN-P 87 (570)
T ss_dssp EEECCSSCCSSCCS-SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECT-TCCCCEECTTTTTTCTTCCEEECTTC-C
T ss_pred EEEeCCCCccccCC-CccccccEEEccCCccCccChhHhhCCCCceEEECC-CCcCCccCcccccCchhCCEEeCcCC-c
Confidence 34445556666665 23457899999999888765 35889999999999 55687888777899999999999999 8
Q ss_pred cccccCccccccccCcEeecccCcccccch-hhhcCCCCcEeeccccccccc--cchhhhcCCCCCceeeecccCCcc
Q 037222 577 FTFQLPLGMSKLGSLELFDISRTEIQELPE-ELKLLVNLKCLNLRWTSKLIR--IPRQLISNSSGLRVLRMFATGYEC 651 (904)
Q Consensus 577 i~~~lp~~i~~L~~L~~L~l~~~~i~~Lp~-~~~~L~~L~~L~l~~~~~l~~--lp~~~i~~L~~L~~L~l~~~~~~~ 651 (904)
++...|..++.+++|++|++++|.+..+|. .++++++|++|++++| .+.. +|.. ++++++|++|++.+|.+..
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~-~~~l~~L~~L~l~~n~l~~ 163 (570)
T 2z63_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY-FSNLTNLEHLDLSSNKIQS 163 (570)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSS-CCCCCCCCGG-GGGCTTCCEEECTTSCCCE
T ss_pred CCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCC-ccceecChhh-hcccCCCCEEeCcCCccce
Confidence 883344778899999999999998888876 5888899999999888 5654 5765 8888999999988886654
No 12
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.87 E-value=1.6e-21 Score=224.02 Aligned_cols=307 Identities=16% Similarity=0.135 Sum_probs=230.1
Q ss_pred EEEeeccccccccCCCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccccccccCcEeecccCc
Q 037222 521 RLSLMQNQIKILSEVPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELFDISRTE 600 (904)
Q Consensus 521 ~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~l~~~~ 600 (904)
.+...++.+..+|. .-.++++.|+++ ++.+..+++..|.++++|++|+|++| .++...|..++++++|++|+|++|.
T Consensus 15 ~v~c~~~~l~~ip~-~~~~~l~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 15 AVLCHRKRFVAVPE-GIPTETRLLDLG-KNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp EEECCSCCCSSCCS-CCCTTCSEEECC-SSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcCcCCC-CCCCCCcEEECC-CCccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCc
Confidence 45555556666654 234689999999 66788888777999999999999999 8984558899999999999999999
Q ss_pred ccccchh-hhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCCcccccCCCCccccCCCccchHhhcCCCCCc
Q 037222 601 IQELPEE-LKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYECFHEAPEDSVLFGGGEVLVQELLGLKYLE 679 (904)
Q Consensus 601 i~~Lp~~-~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 679 (904)
++.+|.. +.++++|++|++++| .+..++...+.++++|++|++.+|.+.... ...+..+++|+
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~---------------~~~~~~l~~L~ 155 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISEN-KIVILLDYMFQDLYNLKSLEVGDNDLVYIS---------------HRAFSGLNSLE 155 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEEECCTTCCEEC---------------TTSSTTCTTCC
T ss_pred CCccCcccccCCCCCCEEECCCC-ccccCChhHccccccCCEEECCCCccceeC---------------hhhccCCCCCC
Confidence 9999875 689999999999999 677776656899999999999998775422 22367889999
Q ss_pred EEEEEecchhhHHHhhhcccccccceeeEecccCCCcchhhhhhhcccCccCceeecccCCcceeeeccccccccccCCc
Q 037222 680 VLELTLGSYQALQIFLSSNKLKSCIRSLFLQLAGDTKSIIDAAAFADLNHLNELYIYEGIELEELKIDYTEIVRKRREPF 759 (904)
Q Consensus 680 ~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~ 759 (904)
.|+++.+....+.... ...+++|+.|.+.++....... ..+..+++|+.|++++|..+..+.....
T Consensus 156 ~L~l~~n~l~~~~~~~--l~~l~~L~~L~l~~n~i~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~---------- 221 (477)
T 2id5_A 156 QLTLEKCNLTSIPTEA--LSHLHGLIVLRLRHLNINAIRD--YSFKRLYRLKVLEISHWPYLDTMTPNCL---------- 221 (477)
T ss_dssp EEEEESCCCSSCCHHH--HTTCTTCCEEEEESCCCCEECT--TCSCSCTTCCEEEEECCTTCCEECTTTT----------
T ss_pred EEECCCCcCcccChhH--hcccCCCcEEeCCCCcCcEeCh--hhcccCcccceeeCCCCccccccCcccc----------
Confidence 9999977655433211 1224689999999886543322 4678889999999999887775433222
Q ss_pred ccCCccEEeEeccCCCCcCc--ccccCCCccEEeEecCccchhhcccCcccCCccccCCCCCCCcccEeecccccccccc
Q 037222 760 VFRSLHRVTIFSCGKLKDVT--FLVFAPNLKSLELLQCDAMEEIISVGEIAETPEMMGHISPFENLQSLHLSYLPILRSI 837 (904)
Q Consensus 760 ~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i 837 (904)
...+|+.|++++| .++.++ .+..+++|+.|+|++|. ++.++. ..+..+++|+.|+|+++. +..+
T Consensus 222 ~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-----------~~~~~l~~L~~L~L~~n~-l~~~ 287 (477)
T 2id5_A 222 YGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEG-----------SMLHELLRLQEIQLVGGQ-LAVV 287 (477)
T ss_dssp TTCCCSEEEEESS-CCCSCCHHHHTTCTTCCEEECCSSC-CCEECT-----------TSCTTCTTCCEEECCSSC-CSEE
T ss_pred cCccccEEECcCC-cccccCHHHhcCccccCeeECCCCc-CCccCh-----------hhccccccCCEEECCCCc-cceE
Confidence 3458999999999 566666 37889999999999865 444432 246678899999999875 5555
Q ss_pred -cCCCCCCCCcceEeeccCCCCCCCCCCCCccCCCceEE
Q 037222 838 -YWKPLPFTHLKKMEVRRCDQLRRLPLDSNSATERNVVI 875 (904)
Q Consensus 838 -~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~l~~i 875 (904)
+.....+++|+.|++++| +++.+|.........+..+
T Consensus 288 ~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L 325 (477)
T 2id5_A 288 EPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETL 325 (477)
T ss_dssp CTTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEE
T ss_pred CHHHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEE
Confidence 334556889999999886 7888876543333333333
No 13
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=1.1e-21 Score=231.42 Aligned_cols=289 Identities=15% Similarity=0.139 Sum_probs=180.0
Q ss_pred ccceeEEEeeccccccccC--CCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccccccccCcE
Q 037222 516 SENVTRLSLMQNQIKILSE--VPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLEL 593 (904)
Q Consensus 516 ~~~~r~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~ 593 (904)
...++.+++.++.+..+|. +..+++|++|+++ ++.+..+++..|..+++|++|+|++| .+++..|..++++++|++
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN-DLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECT-TSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECC-CCCCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCCE
Confidence 3567888888888887776 3678999999999 56687888767899999999999999 888344455789999999
Q ss_pred eecccCcccccchhh-hcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCCcccccCCCCccccCCCccchHhh
Q 037222 594 FDISRTEIQELPEEL-KLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYECFHEAPEDSVLFGGGEVLVQEL 672 (904)
Q Consensus 594 L~l~~~~i~~Lp~~~-~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 672 (904)
|+|++|.+..+|..+ +++++|++|++++| .+..++...++++++|++|++.+|.+.... +
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~------------------~ 188 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHVD------------------L 188 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTSCCSBCC------------------G
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCCCCCCcC------------------h
Confidence 999999999998874 88999999999998 677777666889999999999988776421 3
Q ss_pred cCCCCCcEEEEEecchhhHHHhhhcccccccceeeEecccCCCcchhhhhhhcccCccCceeecccCCcceeeecccccc
Q 037222 673 LGLKYLEVLELTLGSYQALQIFLSSNKLKSCIRSLFLQLAGDTKSIIDAAAFADLNHLNELYIYEGIELEELKIDYTEIV 752 (904)
Q Consensus 673 ~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~ 752 (904)
..+++|+.|+++.+....+ ...++|+.|+++++....... ...++|+.|++++|.... +.++
T Consensus 189 ~~l~~L~~L~l~~n~l~~l-------~~~~~L~~L~ls~n~l~~~~~-----~~~~~L~~L~L~~n~l~~---~~~l--- 250 (597)
T 3oja_B 189 SLIPSLFHANVSYNLLSTL-------AIPIAVEELDASHNSINVVRG-----PVNVELTILKLQHNNLTD---TAWL--- 250 (597)
T ss_dssp GGCTTCSEEECCSSCCSEE-------ECCTTCSEEECCSSCCCEEEC-----SCCSCCCEEECCSSCCCC---CGGG---
T ss_pred hhhhhhhhhhcccCccccc-------cCCchhheeeccCCccccccc-----ccCCCCCEEECCCCCCCC---Chhh---
Confidence 4455666666554432221 112345555555543221110 112455555555553221 1222
Q ss_pred ccccCCcccCCccEEeEeccCCCCcCc-ccccCCCccEEeEecCccchhhcccCcccCCccccCCCCCCCcccEeecccc
Q 037222 753 RKRREPFVFRSLHRVTIFSCGKLKDVT-FLVFAPNLKSLELLQCDAMEEIISVGEIAETPEMMGHISPFENLQSLHLSYL 831 (904)
Q Consensus 753 ~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 831 (904)
..+++|+.|+|++|.....+| .++.+++|+.|+|++|. +..++. ....+|+|+.|+|++|
T Consensus 251 ------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~------------~~~~l~~L~~L~Ls~N 311 (597)
T 3oja_B 251 ------LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNL------------YGQPIPTLKVLDLSHN 311 (597)
T ss_dssp ------GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCEEEC------------SSSCCTTCCEEECCSS
T ss_pred ------ccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-CCCCCc------------ccccCCCCcEEECCCC
Confidence 245555555555553222212 25555555555555532 222221 2334555555555555
Q ss_pred cccccccCCCCCCCCcceEeeccCCCCCCCCCC
Q 037222 832 PILRSIYWKPLPFTHLKKMEVRRCDQLRRLPLD 864 (904)
Q Consensus 832 ~~L~~i~~~~~~~~~L~~L~i~~C~~L~~lp~~ 864 (904)
. +..++.....+++|+.|++++| +++.+|..
T Consensus 312 ~-l~~i~~~~~~l~~L~~L~L~~N-~l~~~~~~ 342 (597)
T 3oja_B 312 H-LLHVERNQPQFDRLENLYLDHN-SIVTLKLS 342 (597)
T ss_dssp C-CCCCGGGHHHHTTCSEEECCSS-CCCCCCCC
T ss_pred C-CCccCcccccCCCCCEEECCCC-CCCCcChh
Confidence 3 4444444444555555555554 45555443
No 14
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.87 E-value=5.4e-21 Score=218.49 Aligned_cols=137 Identities=18% Similarity=0.311 Sum_probs=89.2
Q ss_pred cCCCcccCcccccccceeEEEeeccccccccCCCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccC
Q 037222 503 AGAGLEQAPAVRESENVTRLSLMQNQIKILSEVPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLP 582 (904)
Q Consensus 503 ~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp 582 (904)
.+..+..++.......++.|++++|.+..++.+..+++|+.|+++ ++.+..+++ +.++++|++|++++| .++ .+|
T Consensus 54 ~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~-~n~l~~~~~--~~~l~~L~~L~L~~n-~l~-~~~ 128 (466)
T 1o6v_A 54 DRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMN-NNQIADITP--LANLTNLTGLTLFNN-QIT-DID 128 (466)
T ss_dssp CSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECC-SSCCCCCGG--GTTCTTCCEEECCSS-CCC-CCG
T ss_pred CCCCCccCcchhhhcCCCEEECCCCccCCchhhhccccCCEEECC-CCccccChh--hcCCCCCCEEECCCC-CCC-CCh
Confidence 334444555555566788888888877777667778888888887 555666665 777888888888888 777 665
Q ss_pred ccccccccCcEeecccCcccccchhhhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCCc
Q 037222 583 LGMSKLGSLELFDISRTEIQELPEELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYE 650 (904)
Q Consensus 583 ~~i~~L~~L~~L~l~~~~i~~Lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 650 (904)
. ++++++|++|++++|.+..+|. +..+++|++|++++ .+..++. +.++++|++|++.+|.+.
T Consensus 129 ~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~--~~~~~~~--~~~l~~L~~L~l~~n~l~ 190 (466)
T 1o6v_A 129 P-LKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGN--QVTDLKP--LANLTTLERLDISSNKVS 190 (466)
T ss_dssp G-GTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEE--SCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred H-HcCCCCCCEEECCCCccCCChh-hccCCcccEeecCC--cccCchh--hccCCCCCEEECcCCcCC
Confidence 4 7778888888888877776653 55555555555532 2233332 455555555555555443
No 15
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.87 E-value=2.9e-21 Score=215.53 Aligned_cols=271 Identities=15% Similarity=0.166 Sum_probs=218.8
Q ss_pred CCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccccccccCcEeecccCcccccch-hhhcCCCC
Q 037222 536 PTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELFDISRTEIQELPE-ELKLLVNL 614 (904)
Q Consensus 536 ~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~l~~~~i~~Lp~-~~~~L~~L 614 (904)
..+++++.|+++ ++.+..+|..+|..+++|++|+++++ .++...|..++.+++|++|++++|.+..+|. .++.+++|
T Consensus 42 ~~l~~l~~l~l~-~~~l~~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 42 ITLNNQKIVTFK-NSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119 (390)
T ss_dssp GGGCCCSEEEEE-SCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cccCCceEEEec-CCchhhCChhHhcccccCcEEECCCC-cccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence 457899999999 67799999999999999999999999 8983344589999999999999999998865 57999999
Q ss_pred cEeeccccccccccchhhhcCCCCCceeeecccCCcccccCCCCccccCCCccchHhhcCCCCCcEEEEEecchhhHHHh
Q 037222 615 KCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYECFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQIF 694 (904)
Q Consensus 615 ~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l 694 (904)
++|++++| .++.+|.+.++++++|++|++.+|.+.... ...+..+++|+.|+++.+....+.
T Consensus 120 ~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~---------------~~~~~~l~~L~~L~l~~n~l~~~~-- 181 (390)
T 3o6n_A 120 TVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIE---------------DDTFQATTSLQNLQLSSNRLTHVD-- 181 (390)
T ss_dssp CEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCC---------------TTTTSSCTTCCEEECCSSCCSBCC--
T ss_pred CEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCccCccC---------------hhhccCCCCCCEEECCCCcCCccc--
Confidence 99999999 889999886799999999999999876422 223778899999999877654431
Q ss_pred hhcccccccceeeEecccCCCcchhhhhhhcccCccCceeecccCCcceeeeccccccccccCCcccCCccEEeEeccCC
Q 037222 695 LSSNKLKSCIRSLFLQLAGDTKSIIDAAAFADLNHLNELYIYEGIELEELKIDYTEIVRKRREPFVFRSLHRVTIFSCGK 774 (904)
Q Consensus 695 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~ 774 (904)
....++|+.|.++++... .+...++|++|++++|.... + +. ..+++|+.|++++| .
T Consensus 182 ---~~~l~~L~~L~l~~n~l~-------~~~~~~~L~~L~l~~n~l~~-~-~~-----------~~~~~L~~L~l~~n-~ 237 (390)
T 3o6n_A 182 ---LSLIPSLFHANVSYNLLS-------TLAIPIAVEELDASHNSINV-V-RG-----------PVNVELTILKLQHN-N 237 (390)
T ss_dssp ---GGGCTTCSEEECCSSCCS-------EEECCSSCSEEECCSSCCCE-E-EC-----------CCCSSCCEEECCSS-C
T ss_pred ---cccccccceeeccccccc-------ccCCCCcceEEECCCCeeee-c-cc-----------cccccccEEECCCC-C
Confidence 223478999999886432 34456799999999885433 2 21 24689999999999 6
Q ss_pred CCcCcccccCCCccEEeEecCccchhhcccCcccCCccccCCCCCCCcccEeecccccccccccCCCCCCCCcceEeecc
Q 037222 775 LKDVTFLVFAPNLKSLELLQCDAMEEIISVGEIAETPEMMGHISPFENLQSLHLSYLPILRSIYWKPLPFTHLKKMEVRR 854 (904)
Q Consensus 775 l~~l~~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~ 854 (904)
+..++++..+++|++|+|++|. ++.++. ..+..+++|+.|+|+++. ++.++.....+|+|+.|++++
T Consensus 238 l~~~~~l~~l~~L~~L~Ls~n~-l~~~~~-----------~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~ 304 (390)
T 3o6n_A 238 LTDTAWLLNYPGLVEVDLSYNE-LEKIMY-----------HPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSH 304 (390)
T ss_dssp CCCCGGGGGCTTCSEEECCSSC-CCEEES-----------GGGTTCSSCCEEECCSSC-CCEEECSSSCCTTCCEEECCS
T ss_pred CcccHHHcCCCCccEEECCCCc-CCCcCh-----------hHccccccCCEEECCCCc-CcccCcccCCCCCCCEEECCC
Confidence 7777889999999999999975 443322 146778999999999985 888887777899999999999
Q ss_pred CCCCCCCCCC
Q 037222 855 CDQLRRLPLD 864 (904)
Q Consensus 855 C~~L~~lp~~ 864 (904)
| +++.+|..
T Consensus 305 n-~l~~~~~~ 313 (390)
T 3o6n_A 305 N-HLLHVERN 313 (390)
T ss_dssp S-CCCCCGGG
T ss_pred C-cceecCcc
Confidence 7 78888764
No 16
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.87 E-value=6.3e-21 Score=217.94 Aligned_cols=299 Identities=19% Similarity=0.190 Sum_probs=195.8
Q ss_pred ccceeEEEeeccccccccCCCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccccccccCcEee
Q 037222 516 SENVTRLSLMQNQIKILSEVPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELFD 595 (904)
Q Consensus 516 ~~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~ 595 (904)
...++.+++.++.+..++.+..+++|++|+++ ++.+..+++ +.++++|++|++++| .++ .+|. ++++++|++|+
T Consensus 45 l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls-~n~l~~~~~--~~~l~~L~~L~l~~n-~l~-~~~~-~~~l~~L~~L~ 118 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFS-NNQLTDITP--LKNLTKLVDILMNNN-QIA-DITP-LANLTNLTGLT 118 (466)
T ss_dssp HHTCCEEECCSSCCCCCTTGGGCTTCCEEECC-SSCCCCCGG--GTTCTTCCEEECCSS-CCC-CCGG-GTTCTTCCEEE
T ss_pred hccccEEecCCCCCccCcchhhhcCCCEEECC-CCccCCchh--hhccccCCEEECCCC-ccc-cChh-hcCCCCCCEEE
Confidence 45899999999999888888899999999999 566888877 899999999999999 898 7776 99999999999
Q ss_pred cccCcccccchhhhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCCcccccCC-----CCccccCCCccchH
Q 037222 596 ISRTEIQELPEELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYECFHEAP-----EDSVLFGGGEVLVQ 670 (904)
Q Consensus 596 l~~~~i~~Lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 670 (904)
+++|.+..+|. +.++++|++|++++| .+..+|. ++++++|++|++.. .......-. ....+.......+.
T Consensus 119 L~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 193 (466)
T 1o6v_A 119 LFNNQITDIDP-LKNLTNLNRLELSSN-TISDISA--LSGLTSLQQLSFGN-QVTDLKPLANLTTLERLDISSNKVSDIS 193 (466)
T ss_dssp CCSSCCCCCGG-GTTCTTCSEEEEEEE-EECCCGG--GTTCTTCSEEEEEE-SCCCCGGGTTCTTCCEEECCSSCCCCCG
T ss_pred CCCCCCCCChH-HcCCCCCCEEECCCC-ccCCChh--hccCCcccEeecCC-cccCchhhccCCCCCEEECcCCcCCCCh
Confidence 99999999986 899999999999999 7888885 89999999999963 222110000 00001111111122
Q ss_pred hhcCCCCCcEEEEEecchhhHHHhhhcccccccceeeEecccCCCcchhhhhhhcccCccCceeecccCCcceeeecccc
Q 037222 671 ELLGLKYLEVLELTLGSYQALQIFLSSNKLKSCIRSLFLQLAGDTKSIIDAAAFADLNHLNELYIYEGIELEELKIDYTE 750 (904)
Q Consensus 671 ~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~ 750 (904)
.+..+++|+.|+++.+....... ...+++|+.|+++++.... . ..+..+++|+.|++++|.... +.+
T Consensus 194 ~l~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~-~---~~l~~l~~L~~L~l~~n~l~~-~~~---- 260 (466)
T 1o6v_A 194 VLAKLTNLESLIATNNQISDITP----LGILTNLDELSLNGNQLKD-I---GTLASLTNLTDLDLANNQISN-LAP---- 260 (466)
T ss_dssp GGGGCTTCSEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCC-C---GGGGGCTTCSEEECCSSCCCC-CGG----
T ss_pred hhccCCCCCEEEecCCccccccc----ccccCCCCEEECCCCCccc-c---hhhhcCCCCCEEECCCCcccc-chh----
Confidence 23344444444444332222111 1112345555554443221 1 134445555555555543221 100
Q ss_pred ccccccCCcccCCccEEeEeccCCCCcCcccccCCCccEEeEecCccchhhcccCcccCCccccCCCCCCCcccEeeccc
Q 037222 751 IVRKRREPFVFRSLHRVTIFSCGKLKDVTFLVFAPNLKSLELLQCDAMEEIISVGEIAETPEMMGHISPFENLQSLHLSY 830 (904)
Q Consensus 751 ~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 830 (904)
...+++|+.|++++| .+..++.+..+++|+.|++++|. ++.++ .+..+++|+.|+|++
T Consensus 261 -------~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~-l~~~~-------------~~~~l~~L~~L~L~~ 318 (466)
T 1o6v_A 261 -------LSGLTKLTELKLGAN-QISNISPLAGLTALTNLELNENQ-LEDIS-------------PISNLKNLTYLTLYF 318 (466)
T ss_dssp -------GTTCTTCSEEECCSS-CCCCCGGGTTCTTCSEEECCSSC-CSCCG-------------GGGGCTTCSEEECCS
T ss_pred -------hhcCCCCCEEECCCC-ccCccccccCCCccCeEEcCCCc-ccCch-------------hhcCCCCCCEEECcC
Confidence 135666777777766 44455556667777777776653 33221 256788899999988
Q ss_pred ccccccccCCCCCCCCcceEeeccCCCCCCCCC
Q 037222 831 LPILRSIYWKPLPFTHLKKMEVRRCDQLRRLPL 863 (904)
Q Consensus 831 ~~~L~~i~~~~~~~~~L~~L~i~~C~~L~~lp~ 863 (904)
|. +..++. ...+++|+.|++++| +++.+|.
T Consensus 319 n~-l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~ 348 (466)
T 1o6v_A 319 NN-ISDISP-VSSLTKLQRLFFYNN-KVSDVSS 348 (466)
T ss_dssp SC-CSCCGG-GGGCTTCCEEECCSS-CCCCCGG
T ss_pred Cc-CCCchh-hccCccCCEeECCCC-ccCCchh
Confidence 85 555543 457889999999887 6777653
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.87 E-value=2.7e-21 Score=226.41 Aligned_cols=145 Identities=20% Similarity=0.301 Sum_probs=122.7
Q ss_pred cCCCcccCcccccccceeEEEeecccccccc--CCCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccc
Q 037222 503 AGAGLEQAPAVRESENVTRLSLMQNQIKILS--EVPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQ 580 (904)
Q Consensus 503 ~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~ 580 (904)
.+..+..+|... ...+++|++++|.+..++ .+..+++|++|+++ .+.+..+++..|.++++|++|++++| .++ .
T Consensus 13 ~~~~l~~ip~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls-~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~-~ 88 (549)
T 2z81_A 13 RSRSFTSIPSGL-TAAMKSLDLSFNKITYIGHGDLRACANLQVLILK-SSRINTIEGDAFYSLGSLEHLDLSDN-HLS-S 88 (549)
T ss_dssp TTSCCSSCCSCC-CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECT-TSCCCEECTTTTTTCTTCCEEECTTS-CCC-S
T ss_pred CCCccccccccC-CCCccEEECcCCccCccChhhhhcCCcccEEECC-CCCcCccChhhccccccCCEEECCCC-ccC-c
Confidence 445666676532 368999999999988764 36899999999999 56688888777999999999999999 998 6
Q ss_pred cCcc-ccccccCcEeecccCcccc--cchhhhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCCcc
Q 037222 581 LPLG-MSKLGSLELFDISRTEIQE--LPEELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYEC 651 (904)
Q Consensus 581 lp~~-i~~L~~L~~L~l~~~~i~~--Lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~ 651 (904)
+|.. ++++++|++|++++|.+.. .|..++++++|++|++++|..+..+|...++++++|++|++.+|.+..
T Consensus 89 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 162 (549)
T 2z81_A 89 LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN 162 (549)
T ss_dssp CCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred cCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence 6554 9999999999999999985 467899999999999999965788886559999999999999998764
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.86 E-value=1.7e-21 Score=234.66 Aligned_cols=328 Identities=12% Similarity=0.099 Sum_probs=206.9
Q ss_pred ccccceeEEEeecccccc------------------ccCC-C--CCCCceEEEeecCcccccccchhhcCCCcccEEEee
Q 037222 514 RESENVTRLSLMQNQIKI------------------LSEV-P--TCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKIS 572 (904)
Q Consensus 514 ~~~~~~r~l~l~~~~~~~------------------l~~~-~--~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~ 572 (904)
.....++.|++++|.+.. +|.. . .+++|+.|++++|.....+|.. |.++++|++|+++
T Consensus 445 ~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~~L~Ls 523 (876)
T 4ecn_A 445 QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNIA 523 (876)
T ss_dssp GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGGCSSCCEEECT
T ss_pred hcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH-HhCCCCCCEEECc
Confidence 345689999999998887 6654 4 7999999999965555667754 8899999999999
Q ss_pred cCCC-ccc-ccCccccccc-------cCcEeecccCcccccch--hhhcCCCCcEeeccccccccccchhhhcCCCCCce
Q 037222 573 NCGN-FTF-QLPLGMSKLG-------SLELFDISRTEIQELPE--ELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRV 641 (904)
Q Consensus 573 ~~~~-i~~-~lp~~i~~L~-------~L~~L~l~~~~i~~Lp~--~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~ 641 (904)
+| . +++ .+|..++++. +|++|++++|.+..+|. .++++++|++|++++| .+..+| . ++++++|++
T Consensus 524 ~N-~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N-~l~~lp-~-~~~L~~L~~ 599 (876)
T 4ecn_A 524 CN-RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN-KVRHLE-A-FGTNVKLTD 599 (876)
T ss_dssp TC-TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTS-CCCBCC-C-CCTTSEESE
T ss_pred CC-CCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCC-Ccccch-h-hcCCCcceE
Confidence 99 6 875 6888887776 99999999999999998 8999999999999998 677888 3 899999999
Q ss_pred eeecccCCcccccCCCC----c---cccCCCc-cchHhhcCC--CCCcEEEEEecchhhH-HHhhhccc--ccccceeeE
Q 037222 642 LRMFATGYECFHEAPED----S---VLFGGGE-VLVQELLGL--KYLEVLELTLGSYQAL-QIFLSSNK--LKSCIRSLF 708 (904)
Q Consensus 642 L~l~~~~~~~~~~~~~~----~---~~~~~~~-~~~~~l~~L--~~L~~L~l~~~~~~~~-~~l~~~~~--~~~~L~~L~ 708 (904)
|++.+|.+..+...... . .+..... .....+..+ ++|+.|+++.+..... +.+..... ..++|+.|+
T Consensus 600 L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~ 679 (876)
T 4ecn_A 600 LKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVT 679 (876)
T ss_dssp EECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEE
T ss_pred EECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEE
Confidence 99998877632211100 0 0000000 000111111 1244444443332211 10100000 113566666
Q ss_pred ecccCCCcchhhhhhhcccCccCceeecccCCcceeeeccccccccccCCcccCCccEEeEeccCCCCcCcc-cc--cCC
Q 037222 709 LQLAGDTKSIIDAAAFADLNHLNELYIYEGIELEELKIDYTEIVRKRREPFVFRSLHRVTIFSCGKLKDVTF-LV--FAP 785 (904)
Q Consensus 709 L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~-l~--~l~ 785 (904)
|++|... .++ ...+..+++|+.|++++|... .+ +.+... ...+....+++|+.|+|++| .+..+|. +. .++
T Consensus 680 Ls~N~L~-~lp-~~~~~~l~~L~~L~Ls~N~L~-~i-p~~~~~-~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~ 753 (876)
T 4ecn_A 680 LSYNEIQ-KFP-TELFATGSPISTIILSNNLMT-SI-PENSLK-PKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLP 753 (876)
T ss_dssp CCSSCCC-SCC-HHHHHTTCCCSEEECCSCCCS-CC-CTTSSS-CTTSCCTTGGGCCEEECCSS-CCCCCCGGGSTTTCT
T ss_pred ccCCcCC-ccC-HHHHccCCCCCEEECCCCcCC-cc-ChHHhc-cccccccccCCccEEECCCC-CCccchHHhhhccCC
Confidence 6665433 111 123346677777777776433 22 222110 00000113448888888888 4556654 54 788
Q ss_pred CccEEeEecCccchhhcccCcccCCccccCCCCCCCcccEeeccccc------ccccccCCCCCCCCcceEeeccCCCCC
Q 037222 786 NLKSLELLQCDAMEEIISVGEIAETPEMMGHISPFENLQSLHLSYLP------ILRSIYWKPLPFTHLKKMEVRRCDQLR 859 (904)
Q Consensus 786 ~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~------~L~~i~~~~~~~~~L~~L~i~~C~~L~ 859 (904)
+|+.|+|++|. ++.++. .+..+++|+.|+|++++ -...++.....+++|+.|++++| ++.
T Consensus 754 ~L~~L~Ls~N~-L~~lp~------------~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N-~L~ 819 (876)
T 4ecn_A 754 YLSNMDVSYNC-FSSFPT------------QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN-DIR 819 (876)
T ss_dssp TCCEEECCSSC-CSSCCC------------GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCC
T ss_pred CcCEEEeCCCC-CCccch------------hhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC-CCC
Confidence 88888888864 333432 45577888888887633 23455555667888888888887 568
Q ss_pred CCCCCCC
Q 037222 860 RLPLDSN 866 (904)
Q Consensus 860 ~lp~~~~ 866 (904)
.+|....
T Consensus 820 ~Ip~~l~ 826 (876)
T 4ecn_A 820 KVDEKLT 826 (876)
T ss_dssp BCCSCCC
T ss_pred ccCHhhc
Confidence 8887654
No 19
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.86 E-value=1.4e-20 Score=223.15 Aligned_cols=342 Identities=17% Similarity=0.116 Sum_probs=206.7
Q ss_pred EEEcCCCcccCcccccccceeEEEeeccccccccC--CCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCc
Q 037222 500 LVCAGAGLEQAPAVRESENVTRLSLMQNQIKILSE--VPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNF 577 (904)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i 577 (904)
+...+..+..+|.. -+..+++|++++|.+..+++ +..+++|++|+++ ++.+..+++..|.++++|++|++++| .+
T Consensus 17 ~~c~~~~l~~iP~~-l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls-~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l 93 (606)
T 3t6q_A 17 YNCENLGLNEIPGT-LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLT-RCQIYWIHEDTFQSQHRLDTLVLTAN-PL 93 (606)
T ss_dssp EECTTSCCSSCCTT-SCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECT-TCCCCEECTTTTTTCTTCCEEECTTC-CC
T ss_pred EECCCCCcccCcCC-CCCcCcEEEccCCccCcCChhHhccCccceEEECC-CCccceeChhhccCccccCeeeCCCC-cc
Confidence 34455566666642 34589999999999988743 5899999999999 55677777777999999999999999 88
Q ss_pred ccccCccccccccCcEeecccCccccc-chhhhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCCcccccCC
Q 037222 578 TFQLPLGMSKLGSLELFDISRTEIQEL-PEELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYECFHEAP 656 (904)
Q Consensus 578 ~~~lp~~i~~L~~L~~L~l~~~~i~~L-p~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~ 656 (904)
+...|..++++++|++|++++|.+..+ |..++++++|++|++++| .+..++...+..+++|++|++.+|.+...
T Consensus 94 ~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---- 168 (606)
T 3t6q_A 94 IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN-HISSIKLPKGFPTEKLKVLDFQNNAIHYL---- 168 (606)
T ss_dssp SEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSS-CCCCCCCCTTCCCTTCCEEECCSSCCCEE----
T ss_pred cccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCC-cccccCcccccCCcccCEEEcccCccccc----
Confidence 845688999999999999999999988 677899999999999999 67776322256699999999999877532
Q ss_pred CCccccCCCccchHhhcCCCCCc--EEEEEecchhhHHHhhhcc------------------------------------
Q 037222 657 EDSVLFGGGEVLVQELLGLKYLE--VLELTLGSYQALQIFLSSN------------------------------------ 698 (904)
Q Consensus 657 ~~~~~~~~~~~~~~~l~~L~~L~--~L~l~~~~~~~~~~l~~~~------------------------------------ 698 (904)
....+..+++|+ .|+++.+.......-....
T Consensus 169 -----------~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~ 237 (606)
T 3t6q_A 169 -----------SKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFED 237 (606)
T ss_dssp -----------CHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTT
T ss_pred -----------ChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhcc
Confidence 223344555555 3333322211100000000
Q ss_pred ------------cc-cccceeeEecccCCCcchhhhhhhcccCccCceeecccCCcceeeeccccccccccCCcccCCcc
Q 037222 699 ------------KL-KSCIRSLFLQLAGDTKSIIDAAAFADLNHLNELYIYEGIELEELKIDYTEIVRKRREPFVFRSLH 765 (904)
Q Consensus 699 ------------~~-~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~ 765 (904)
.+ ..+|+.|+++++....... ..+..+++|++|++++|... .+ +.++ ..+++|+
T Consensus 238 ~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~-~l-p~~l---------~~l~~L~ 304 (606)
T 3t6q_A 238 MDDEDISPAVFEGLCEMSVESINLQKHYFFNISS--NTFHCFSGLQELDLTATHLS-EL-PSGL---------VGLSTLK 304 (606)
T ss_dssp SCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCT--TTTTTCTTCSEEECTTSCCS-CC-CSSC---------CSCTTCC
T ss_pred ccccccChhHhchhhcCceeEEEeecCccCccCH--HHhccccCCCEEeccCCccC-CC-Chhh---------cccccCC
Confidence 00 0145556665553322111 34566777777777776432 22 2222 2456666
Q ss_pred EEeEeccCCCCcC-c-ccccCCCccEEeEecCccchhhcccC---------------cccCCccccCCCCCCCcccEeec
Q 037222 766 RVTIFSCGKLKDV-T-FLVFAPNLKSLELLQCDAMEEIISVG---------------EIAETPEMMGHISPFENLQSLHL 828 (904)
Q Consensus 766 ~L~L~~c~~l~~l-~-~l~~l~~L~~L~L~~c~~l~~~~~~~---------------~~~~~~~~~~~~~~~~~L~~L~L 828 (904)
+|++++|. +..+ + .+..+++|+.|++++|.....++... ...........+..+++|+.|++
T Consensus 305 ~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l 383 (606)
T 3t6q_A 305 KLVLSANK-FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNL 383 (606)
T ss_dssp EEECTTCC-CSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEEC
T ss_pred EEECccCC-cCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEEC
Confidence 66666663 3322 2 25556666666665553322221100 00000000123566777777777
Q ss_pred ccccccccc-cCCCCCCCCcceEeeccCCCCCCC-CCCCCccCCCceEEE
Q 037222 829 SYLPILRSI-YWKPLPFTHLKKMEVRRCDQLRRL-PLDSNSATERNVVIR 876 (904)
Q Consensus 829 ~~~~~L~~i-~~~~~~~~~L~~L~i~~C~~L~~l-p~~~~~~~~~l~~i~ 876 (904)
+++. +..+ +.....+++|+.|++++| +++.. |.........+..++
T Consensus 384 ~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~ 431 (606)
T 3t6q_A 384 SYNE-PLSLKTEAFKECPQLELLDLAFT-RLKVKDAQSPFQNLHLLKVLN 431 (606)
T ss_dssp CSCS-CEEECTTTTTTCTTCSEEECTTC-CEECCTTCCTTTTCTTCCEEE
T ss_pred CCCc-CCcCCHHHhcCCccCCeEECCCC-cCCCcccchhhhCcccCCEEE
Confidence 7765 3333 334456778888888776 44433 332222234444444
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.86 E-value=2.2e-20 Score=217.08 Aligned_cols=141 Identities=19% Similarity=0.239 Sum_probs=116.0
Q ss_pred EEEEcCCCcccCcccccccceeEEEeeccccccccC--CCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCC
Q 037222 499 FLVCAGAGLEQAPAVRESENVTRLSLMQNQIKILSE--VPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGN 576 (904)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~ 576 (904)
.+...+..+..+|.... ..+++|++++|.+..++. +..+++|++|+++ ++.+..+++..|.++++|++|++++| .
T Consensus 4 ~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~Ls~N-~ 80 (520)
T 2z7x_B 4 LVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIIS-HNRIQYLDISVFKFNQELEYLDLSHN-K 80 (520)
T ss_dssp EEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECC-SSCCCEEEGGGGTTCTTCCEEECCSS-C
T ss_pred eEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecC-CCccCCcChHHhhcccCCCEEecCCC-c
Confidence 34445556666665333 789999999999887753 5889999999999 66688887777999999999999999 9
Q ss_pred cccccCccccccccCcEeecccCcccc--cchhhhcCCCCcEeeccccccccccchhhhcCCCCC--ceeeecccCC
Q 037222 577 FTFQLPLGMSKLGSLELFDISRTEIQE--LPEELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGL--RVLRMFATGY 649 (904)
Q Consensus 577 i~~~lp~~i~~L~~L~~L~l~~~~i~~--Lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L--~~L~l~~~~~ 649 (904)
++ .+|.. .+++|++|++++|.+.. +|..++++++|++|++++| .+... .+..+++| ++|++.+|.+
T Consensus 81 l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n-~l~~~---~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 81 LV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT-HLEKS---SVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEES-SCCGG---GGGGGTTSCEEEEEEEECTT
T ss_pred ee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCc-ccchh---hccccccceeeEEEeecccc
Confidence 99 88877 89999999999999986 5789999999999999998 55552 27788888 9999998876
No 21
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=7.6e-21 Score=224.09 Aligned_cols=271 Identities=15% Similarity=0.165 Sum_probs=219.0
Q ss_pred CCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccccccccCcEeecccCcccccchh-hhcCCCC
Q 037222 536 PTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELFDISRTEIQELPEE-LKLLVNL 614 (904)
Q Consensus 536 ~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~l~~~~i~~Lp~~-~~~L~~L 614 (904)
..+++++.|+++ ++.+..+|+.+|..+++|++|+|++| .+++..|..++.+++|++|+|++|.+..+|.. ++++++|
T Consensus 48 l~l~~l~~l~l~-~~~l~~lp~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 125 (597)
T 3oja_B 48 ITLNNQKIVTFK-NSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 125 (597)
T ss_dssp GGGCCCSEEEES-SCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred ccCCCceEEEee-CCCCCCcCHHHHccCCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCC
Confidence 457899999999 67789999999999999999999999 89844456899999999999999999988765 6999999
Q ss_pred cEeeccccccccccchhhhcCCCCCceeeecccCCcccccCCCCccccCCCccchHhhcCCCCCcEEEEEecchhhHHHh
Q 037222 615 KCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYECFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQIF 694 (904)
Q Consensus 615 ~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l 694 (904)
++|++++| .+..+|.+.++++++|++|++.+|.+... ....+..+++|+.|+++.+....+.
T Consensus 126 ~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~---------------~~~~~~~l~~L~~L~L~~N~l~~~~-- 187 (597)
T 3oja_B 126 TVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERI---------------EDDTFQATTSLQNLQLSSNRLTHVD-- 187 (597)
T ss_dssp CEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBC---------------CTTTTTTCTTCCEEECTTSCCSBCC--
T ss_pred CEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCC---------------ChhhhhcCCcCcEEECcCCCCCCcC--
Confidence 99999999 88999988679999999999999987642 2234778999999999876654432
Q ss_pred hhcccccccceeeEecccCCCcchhhhhhhcccCccCceeecccCCcceeeeccccccccccCCcccCCccEEeEeccCC
Q 037222 695 LSSNKLKSCIRSLFLQLAGDTKSIIDAAAFADLNHLNELYIYEGIELEELKIDYTEIVRKRREPFVFRSLHRVTIFSCGK 774 (904)
Q Consensus 695 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~ 774 (904)
...+++|+.|.++++... .+..+++|+.|++++|.... + +. ..+++|+.|+|++| .
T Consensus 188 ---~~~l~~L~~L~l~~n~l~-------~l~~~~~L~~L~ls~n~l~~-~-~~-----------~~~~~L~~L~L~~n-~ 243 (597)
T 3oja_B 188 ---LSLIPSLFHANVSYNLLS-------TLAIPIAVEELDASHNSINV-V-RG-----------PVNVELTILKLQHN-N 243 (597)
T ss_dssp ---GGGCTTCSEEECCSSCCS-------EEECCTTCSEEECCSSCCCE-E-EC-----------SCCSCCCEEECCSS-C
T ss_pred ---hhhhhhhhhhhcccCccc-------cccCCchhheeeccCCcccc-c-cc-----------ccCCCCCEEECCCC-C
Confidence 223478999999886432 34556789999999886432 2 21 13578999999999 6
Q ss_pred CCcCcccccCCCccEEeEecCccchhhcccCcccCCccccCCCCCCCcccEeecccccccccccCCCCCCCCcceEeecc
Q 037222 775 LKDVTFLVFAPNLKSLELLQCDAMEEIISVGEIAETPEMMGHISPFENLQSLHLSYLPILRSIYWKPLPFTHLKKMEVRR 854 (904)
Q Consensus 775 l~~l~~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~ 854 (904)
+..++++..+++|+.|+|++|. +..++. ..+..+++|+.|+|+++. +..++.....+|+|+.|++++
T Consensus 244 l~~~~~l~~l~~L~~L~Ls~N~-l~~~~~-----------~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~Ls~ 310 (597)
T 3oja_B 244 LTDTAWLLNYPGLVEVDLSYNE-LEKIMY-----------HPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSH 310 (597)
T ss_dssp CCCCGGGGGCTTCSEEECCSSC-CCEEES-----------GGGTTCSSCCEEECTTSC-CCEEECSSSCCTTCCEEECCS
T ss_pred CCCChhhccCCCCCEEECCCCc-cCCCCH-----------HHhcCccCCCEEECCCCC-CCCCCcccccCCCCcEEECCC
Confidence 7778889999999999999975 333322 146788999999999975 888887777899999999999
Q ss_pred CCCCCCCCCC
Q 037222 855 CDQLRRLPLD 864 (904)
Q Consensus 855 C~~L~~lp~~ 864 (904)
| +++.+|..
T Consensus 311 N-~l~~i~~~ 319 (597)
T 3oja_B 311 N-HLLHVERN 319 (597)
T ss_dssp S-CCCCCGGG
T ss_pred C-CCCccCcc
Confidence 7 77788754
No 22
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.86 E-value=2e-21 Score=230.42 Aligned_cols=327 Identities=11% Similarity=0.095 Sum_probs=186.2
Q ss_pred cccceeEEEeecccccc------------------ccCC-C--CCCCceEEEeecCcccccccchhhcCCCcccEEEeec
Q 037222 515 ESENVTRLSLMQNQIKI------------------LSEV-P--TCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISN 573 (904)
Q Consensus 515 ~~~~~r~l~l~~~~~~~------------------l~~~-~--~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~ 573 (904)
....++.|++++|.+.. +|.. . .+++|++|++++|.....+|.. |.++++|++|++++
T Consensus 204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~ 282 (636)
T 4eco_A 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLINVAC 282 (636)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT-TTTCSSCCEEECTT
T ss_pred cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHH-HhcCCCCCEEECcC
Confidence 34577888888887776 5553 4 6788888888855444555644 77788888888888
Q ss_pred CCC-ccc-ccCcccccc------ccCcEeecccCcccccch--hhhcCCCCcEeecccccccc-ccchhhhcCCCCCcee
Q 037222 574 CGN-FTF-QLPLGMSKL------GSLELFDISRTEIQELPE--ELKLLVNLKCLNLRWTSKLI-RIPRQLISNSSGLRVL 642 (904)
Q Consensus 574 ~~~-i~~-~lp~~i~~L------~~L~~L~l~~~~i~~Lp~--~~~~L~~L~~L~l~~~~~l~-~lp~~~i~~L~~L~~L 642 (904)
| . +++ .+|..++.+ ++|++|++++|.+..+|. .++++++|++|++++| .+. .+| . ++.+++|++|
T Consensus 283 n-~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N-~l~g~ip-~-~~~l~~L~~L 358 (636)
T 4eco_A 283 N-RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN-QLEGKLP-A-FGSEIKLASL 358 (636)
T ss_dssp C-TTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSC-CCEEECC-C-CEEEEEESEE
T ss_pred C-CCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCC-cCccchh-h-hCCCCCCCEE
Confidence 8 6 775 577777776 788888888888778887 7888888888888877 555 777 3 7777777777
Q ss_pred eecccCCcccccCCC---C----ccccCCCc-cchHhhcC--CCCCcEEEEEecchhhHHH--hh---hcccccccceee
Q 037222 643 RMFATGYECFHEAPE---D----SVLFGGGE-VLVQELLG--LKYLEVLELTLGSYQALQI--FL---SSNKLKSCIRSL 707 (904)
Q Consensus 643 ~l~~~~~~~~~~~~~---~----~~~~~~~~-~~~~~l~~--L~~L~~L~l~~~~~~~~~~--l~---~~~~~~~~L~~L 707 (904)
++.+|.+..+..... . ..+..... .....+.. +++|+.|+++.+....... +. ......++|+.|
T Consensus 359 ~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L 438 (636)
T 4eco_A 359 NLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSI 438 (636)
T ss_dssp ECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEE
T ss_pred ECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEE
Confidence 777776542211100 0 00000000 00011111 2245555555443322100 00 000012366666
Q ss_pred EecccCCCcchhhhhhhcccCccCceeecccCCcceeeeccccccccccCCcccCCccEEeEeccCCCCcCcc-cc--cC
Q 037222 708 FLQLAGDTKSIIDAAAFADLNHLNELYIYEGIELEELKIDYTEIVRKRREPFVFRSLHRVTIFSCGKLKDVTF-LV--FA 784 (904)
Q Consensus 708 ~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~-l~--~l 784 (904)
+++++.... +. ...+..+++|+.|++++|... .+....... ..+....+++|+.|+|++| .++.+|. +. .+
T Consensus 439 ~Ls~N~l~~-lp-~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~--~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~l 512 (636)
T 4eco_A 439 NLSNNQISK-FP-KELFSTGSPLSSINLMGNMLT-EIPKNSLKD--ENENFKNTYLLTSIDLRFN-KLTKLSDDFRATTL 512 (636)
T ss_dssp ECCSSCCCS-CC-THHHHTTCCCSEEECCSSCCS-BCCSSSSEE--TTEECTTGGGCCEEECCSS-CCCBCCGGGSTTTC
T ss_pred ECcCCccCc-CC-HHHHccCCCCCEEECCCCCCC-CcCHHHhcc--ccccccccCCccEEECcCC-cCCccChhhhhccC
Confidence 666654331 11 123445677777777766533 222221110 0000012337888888877 3445553 44 77
Q ss_pred CCccEEeEecCccchhhcccCcccCCccccCCCCCCCcccEeeccc------ccccccccCCCCCCCCcceEeeccCCCC
Q 037222 785 PNLKSLELLQCDAMEEIISVGEIAETPEMMGHISPFENLQSLHLSY------LPILRSIYWKPLPFTHLKKMEVRRCDQL 858 (904)
Q Consensus 785 ~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~------~~~L~~i~~~~~~~~~L~~L~i~~C~~L 858 (904)
++|+.|+|++|. ++.++. .+..+++|+.|+|++ +.-...++.....+++|+.|++++| ++
T Consensus 513 ~~L~~L~Ls~N~-l~~ip~------------~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l 578 (636)
T 4eco_A 513 PYLVGIDLSYNS-FSKFPT------------QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN-DI 578 (636)
T ss_dssp TTCCEEECCSSC-CSSCCC------------GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CC
T ss_pred CCcCEEECCCCC-CCCcCh------------hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC-cC
Confidence 888888887754 333432 345677777777744 3323445555556777777777775 55
Q ss_pred CCCCCCCC
Q 037222 859 RRLPLDSN 866 (904)
Q Consensus 859 ~~lp~~~~ 866 (904)
+.+|....
T Consensus 579 ~~ip~~~~ 586 (636)
T 4eco_A 579 RKVNEKIT 586 (636)
T ss_dssp CBCCSCCC
T ss_pred CccCHhHh
Confidence 77776544
No 23
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=4.8e-21 Score=208.69 Aligned_cols=294 Identities=15% Similarity=0.102 Sum_probs=215.3
Q ss_pred ceeEEEeeccccccccCCCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccccccccCcEeecc
Q 037222 518 NVTRLSLMQNQIKILSEVPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELFDIS 597 (904)
Q Consensus 518 ~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~l~ 597 (904)
.++.+.+.++.+..+|.. -.++|++|+++ ++.+..+++..|.++++|++|++++| .++...|..++.+++|++|+++
T Consensus 34 ~l~~l~~~~~~l~~ip~~-~~~~l~~L~l~-~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKE-ISPDTTLLDLQ-NNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCSSCCSC-CCTTCCEEECC-SSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCccccCCC-CCCCCeEEECC-CCcCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEECC
Confidence 577888888888877653 25799999999 56688888777999999999999999 8984458889999999999999
Q ss_pred cCcccccchhhhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCCcccccCCCCccccCCCccchHhhcCCCC
Q 037222 598 RTEIQELPEELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYECFHEAPEDSVLFGGGEVLVQELLGLKY 677 (904)
Q Consensus 598 ~~~i~~Lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 677 (904)
+|.+..+|..+. ++|++|++++| .+..+|...+.++++|++|++.+|.+...+. ....+..+ +
T Consensus 111 ~n~l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------------~~~~~~~l-~ 173 (332)
T 2ft3_A 111 KNHLVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLENSGF-------------EPGAFDGL-K 173 (332)
T ss_dssp SSCCCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCCCBGGGS-------------CTTSSCSC-C
T ss_pred CCcCCccCcccc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCccccCCC-------------CcccccCC-c
Confidence 999999998776 89999999999 7889988778999999999999987753211 22234555 7
Q ss_pred CcEEEEEecchhhHHHhhhcccccccceeeEecccCCCcchhhhhhhcccCccCceeecccCCcceeeeccccccccccC
Q 037222 678 LEVLELTLGSYQALQIFLSSNKLKSCIRSLFLQLAGDTKSIIDAAAFADLNHLNELYIYEGIELEELKIDYTEIVRKRRE 757 (904)
Q Consensus 678 L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~ 757 (904)
|+.|+++.+....++. ...++|+.|+++++....... ..+..+++|+.|++++|.... +.+.++
T Consensus 174 L~~L~l~~n~l~~l~~-----~~~~~L~~L~l~~n~i~~~~~--~~l~~l~~L~~L~L~~N~l~~-~~~~~~-------- 237 (332)
T 2ft3_A 174 LNYLRISEAKLTGIPK-----DLPETLNELHLDHNKIQAIEL--EDLLRYSKLYRLGLGHNQIRM-IENGSL-------- 237 (332)
T ss_dssp CSCCBCCSSBCSSCCS-----SSCSSCSCCBCCSSCCCCCCT--TSSTTCTTCSCCBCCSSCCCC-CCTTGG--------
T ss_pred cCEEECcCCCCCccCc-----cccCCCCEEECCCCcCCccCH--HHhcCCCCCCEEECCCCcCCc-CChhHh--------
Confidence 8888887665544321 123689999999875443322 467788999999999885433 333333
Q ss_pred CcccCCccEEeEeccCCCCcCc-ccccCCCccEEeEecCccchhhcccCcccCCccccCCCCCCCcccEeeccccccccc
Q 037222 758 PFVFRSLHRVTIFSCGKLKDVT-FLVFAPNLKSLELLQCDAMEEIISVGEIAETPEMMGHISPFENLQSLHLSYLPILRS 836 (904)
Q Consensus 758 ~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~ 836 (904)
..+++|+.|++++| .++.+| .+..+++|+.|+|++| .++.++...+... .....+++|+.|++.+++ +..
T Consensus 238 -~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~-----~~~~~~~~l~~L~l~~N~-~~~ 308 (332)
T 2ft3_A 238 -SFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPV-----GFGVKRAYYNGISLFNNP-VPY 308 (332)
T ss_dssp -GGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCS-----SCCSSSCCBSEEECCSSS-SCG
T ss_pred -hCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCC-CCCccChhHcccc-----ccccccccccceEeecCc-ccc
Confidence 37899999999999 556666 4889999999999985 4555543211110 011236789999999987 442
Q ss_pred ---ccCCCCCCCCcceEeeccCC
Q 037222 837 ---IYWKPLPFTHLKKMEVRRCD 856 (904)
Q Consensus 837 ---i~~~~~~~~~L~~L~i~~C~ 856 (904)
.+.....+++|+.|+++++.
T Consensus 309 ~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 309 WEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GGSCGGGGTTBCCSTTEEC----
T ss_pred cccCcccccccchhhhhhccccc
Confidence 22234457888888888764
No 24
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.85 E-value=1.5e-20 Score=222.80 Aligned_cols=248 Identities=18% Similarity=0.086 Sum_probs=110.9
Q ss_pred ccccccCcEeecccCcccccchhhhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCCcccccCCCCccccCC
Q 037222 585 MSKLGSLELFDISRTEIQELPEELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYECFHEAPEDSVLFGG 664 (904)
Q Consensus 585 i~~L~~L~~L~l~~~~i~~Lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 664 (904)
++.+++|++|++++|.+..+|..+..+++|++|++++| .+..++...+.++++|++|++.+|.+..
T Consensus 274 ~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~~~------------- 339 (606)
T 3t6q_A 274 FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSAN-KFENLCQISASNFPSLTHLSIKGNTKRL------------- 339 (606)
T ss_dssp TTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTC-CCSBGGGGCGGGCTTCSEEECCSCSSCC-------------
T ss_pred hccccCCCEEeccCCccCCCChhhcccccCCEEECccC-CcCcCchhhhhccCcCCEEECCCCCccc-------------
Confidence 44555566666666666666665666666666666655 4444433335556666666665554331
Q ss_pred CccchHhhcCCCCCcEEEEEecchhhHHHhhhcccccccceeeEecccCCCcchhhhhhhcccCccCceeecccCCccee
Q 037222 665 GEVLVQELLGLKYLEVLELTLGSYQALQIFLSSNKLKSCIRSLFLQLAGDTKSIIDAAAFADLNHLNELYIYEGIELEEL 744 (904)
Q Consensus 665 ~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l 744 (904)
......+..+++|+.|+++.+..............+++|+.|+++++....... ..+..+++|++|++++|......
T Consensus 340 -~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~ 416 (606)
T 3t6q_A 340 -ELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKT--EAFKECPQLELLDLAFTRLKVKD 416 (606)
T ss_dssp -BCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECT--TTTTTCTTCSEEECTTCCEECCT
T ss_pred -ccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCH--HHhcCCccCCeEECCCCcCCCcc
Confidence 001112445555555555544332221101111223455555555543221111 23444555555555554322110
Q ss_pred eeccccc--------------cc-cccCCcccCCccEEeEeccCCCCc-C---cccccCCCccEEeEecCccchhhcccC
Q 037222 745 KIDYTEI--------------VR-KRREPFVFRSLHRVTIFSCGKLKD-V---TFLVFAPNLKSLELLQCDAMEEIISVG 805 (904)
Q Consensus 745 ~~~~~~~--------------~~-~~~~~~~l~~L~~L~L~~c~~l~~-l---~~l~~l~~L~~L~L~~c~~l~~~~~~~ 805 (904)
...++.. .. .+.....+++|+.|++++|..... + ..+..+++|+.|+|++|. ++.++.
T Consensus 417 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-- 493 (606)
T 3t6q_A 417 AQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD-LSSIDQ-- 493 (606)
T ss_dssp TCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC-CCEECT--
T ss_pred cchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc-cCccCh--
Confidence 0111100 00 000012344444444444421110 0 123444455555554432 222211
Q ss_pred cccCCccccCCCCCCCcccEeeccccccccc-ccCCCCCCCCcceEeeccCCCCCCCCCC
Q 037222 806 EIAETPEMMGHISPFENLQSLHLSYLPILRS-IYWKPLPFTHLKKMEVRRCDQLRRLPLD 864 (904)
Q Consensus 806 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~-i~~~~~~~~~L~~L~i~~C~~L~~lp~~ 864 (904)
..+..+++|+.|+|+++. +.. .+.....+++| .|++++| +++.+|..
T Consensus 494 ---------~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~L-~L~L~~N-~l~~~~~~ 541 (606)
T 3t6q_A 494 ---------HAFTSLKMMNHVDLSHNR-LTSSSIEALSHLKGI-YLNLASN-HISIILPS 541 (606)
T ss_dssp ---------TTTTTCTTCCEEECCSSC-CCGGGGGGGTTCCSC-EEECCSS-CCCCCCGG
T ss_pred ---------hhhccccCCCEEECCCCc-cCcCChhHhCccccc-EEECcCC-cccccCHh
Confidence 135566777777777765 333 33344456677 7777775 56665543
No 25
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.85 E-value=2.6e-20 Score=202.71 Aligned_cols=295 Identities=16% Similarity=0.132 Sum_probs=217.3
Q ss_pred cceeEEEeeccccccccCCCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccccccccCcEeec
Q 037222 517 ENVTRLSLMQNQIKILSEVPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELFDI 596 (904)
Q Consensus 517 ~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~l 596 (904)
..++.+.+.++.+..+|.. -.++++.|+++ ++.+..++...|.++++|++|++++| .++...|..++.+++|++|++
T Consensus 31 c~l~~l~~~~~~l~~lp~~-~~~~l~~L~L~-~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKD-LPPDTALLDLQ-NNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp EETTEEECTTSCCCSCCCS-CCTTCCEEECC-SSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEEC
T ss_pred CCCeEEEecCCCccccCcc-CCCCCeEEECC-CCcCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEEC
Confidence 3567788888877777652 34789999999 66788888877999999999999999 898444889999999999999
Q ss_pred ccCcccccchhhhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCCcccccCCCCccccCCCccchHhhcCCC
Q 037222 597 SRTEIQELPEELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYECFHEAPEDSVLFGGGEVLVQELLGLK 676 (904)
Q Consensus 597 ~~~~i~~Lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 676 (904)
++|.++.+|..+. ++|++|++++| .+..++...+.++++|++|++.+|.+... ......+..++
T Consensus 108 s~n~l~~l~~~~~--~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-------------~~~~~~~~~l~ 171 (330)
T 1xku_A 108 SKNQLKELPEKMP--KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKSS-------------GIENGAFQGMK 171 (330)
T ss_dssp CSSCCSBCCSSCC--TTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCGG-------------GBCTTGGGGCT
T ss_pred CCCcCCccChhhc--ccccEEECCCC-cccccCHhHhcCCccccEEECCCCcCCcc-------------CcChhhccCCC
Confidence 9999999998776 79999999999 78888887799999999999999877531 12334577889
Q ss_pred CCcEEEEEecchhhHHHhhhcccccccceeeEecccCCCcchhhhhhhcccCccCceeecccCCcceeeecccccccccc
Q 037222 677 YLEVLELTLGSYQALQIFLSSNKLKSCIRSLFLQLAGDTKSIIDAAAFADLNHLNELYIYEGIELEELKIDYTEIVRKRR 756 (904)
Q Consensus 677 ~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~ 756 (904)
+|+.|+++.+....+.. ...++|+.|+++++....... ..+..+++|+.|++++|... .+.+..+
T Consensus 172 ~L~~L~l~~n~l~~l~~-----~~~~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~Ls~n~l~-~~~~~~~------- 236 (330)
T 1xku_A 172 KLSYIRIADTNITTIPQ-----GLPPSLTELHLDGNKITKVDA--ASLKGLNNLAKLGLSFNSIS-AVDNGSL------- 236 (330)
T ss_dssp TCCEEECCSSCCCSCCS-----SCCTTCSEEECTTSCCCEECT--GGGTTCTTCCEEECCSSCCC-EECTTTG-------
T ss_pred CcCEEECCCCccccCCc-----cccccCCEEECCCCcCCccCH--HHhcCCCCCCEEECCCCcCc-eeChhhc-------
Confidence 99999998766543321 123689999999886443322 46778899999999988543 3333333
Q ss_pred CCcccCCccEEeEeccCCCCcCc-ccccCCCccEEeEecCccchhhcccCcccCCccccCCCCCCCcccEeecccccccc
Q 037222 757 EPFVFRSLHRVTIFSCGKLKDVT-FLVFAPNLKSLELLQCDAMEEIISVGEIAETPEMMGHISPFENLQSLHLSYLPILR 835 (904)
Q Consensus 757 ~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~ 835 (904)
..+++|+.|+|++| .+..+| .+..+++|++|+|++| .++.++...+... .....++.|+.|++.+++ +.
T Consensus 237 --~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~-----~~~~~~~~l~~l~l~~N~-~~ 306 (330)
T 1xku_A 237 --ANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN-NISAIGSNDFCPP-----GYNTKKASYSGVSLFSNP-VQ 306 (330)
T ss_dssp --GGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCS-----SCCTTSCCCSEEECCSSS-SC
T ss_pred --cCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCC-cCCccChhhcCCc-----ccccccccccceEeecCc-cc
Confidence 36889999999999 455665 4888999999999985 4555543222110 012246788999999887 44
Q ss_pred cccC---CCCCCCCcceEeeccC
Q 037222 836 SIYW---KPLPFTHLKKMEVRRC 855 (904)
Q Consensus 836 ~i~~---~~~~~~~L~~L~i~~C 855 (904)
.+.. ....+++|+.++++++
T Consensus 307 ~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 307 YWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp GGGSCGGGGTTCCCGGGEEC---
T ss_pred ccccCccccccccceeEEEeccc
Confidence 3222 2345677888887764
No 26
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.85 E-value=5.6e-20 Score=215.49 Aligned_cols=141 Identities=22% Similarity=0.310 Sum_probs=108.4
Q ss_pred EEEEcCCCcccCcccccccceeEEEeecccccccc--CCCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCC
Q 037222 499 FLVCAGAGLEQAPAVRESENVTRLSLMQNQIKILS--EVPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGN 576 (904)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~ 576 (904)
.+...+..+..+|... ...+++|++++|.+..++ .+..+++|++|+++ ++.+..+++..|.++++|++|++++| .
T Consensus 35 ~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L~Ls~N-~ 111 (562)
T 3a79_B 35 MVDYSNRNLTHVPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLS-HNRIRSLDFHVFLFNQDLEYLDVSHN-R 111 (562)
T ss_dssp EEECTTSCCCSCCTTS-CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECC-SCCCCEECTTTTTTCTTCCEEECTTS-C
T ss_pred EEEcCCCCCccCCCCC-CCCcCEEECCCCCccccChhhhccCCCccEEECC-CCCCCcCCHHHhCCCCCCCEEECCCC-c
Confidence 4445566666666532 367888999888888775 36888889999998 55677777777888899999999998 8
Q ss_pred cccccCccccccccCcEeecccCcccccc--hhhhcCCCCcEeeccccccccccchhhhcCCCCC--ceeeecccCC
Q 037222 577 FTFQLPLGMSKLGSLELFDISRTEIQELP--EELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGL--RVLRMFATGY 649 (904)
Q Consensus 577 i~~~lp~~i~~L~~L~~L~l~~~~i~~Lp--~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L--~~L~l~~~~~ 649 (904)
++ .+|.. .+++|++|++++|.+..+| ..++++++|++|++++| .+...+ +..+++| ++|++.+|.+
T Consensus 112 l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n-~l~~~~---~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 112 LQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA-KFRQLD---LLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECS-BCCTTT---TGGGTTSCEEEEEEEESSC
T ss_pred CC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCC-ccccCc---hhhhhhceeeEEEeecccc
Confidence 88 88877 7888999999999888764 68888899999999887 555432 4555666 8888888766
No 27
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.84 E-value=1.2e-20 Score=213.78 Aligned_cols=298 Identities=15% Similarity=0.119 Sum_probs=139.7
Q ss_pred cceeEEEeeccccccccCCCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccccccccCcEeec
Q 037222 517 ENVTRLSLMQNQIKILSEVPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELFDI 596 (904)
Q Consensus 517 ~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~l 596 (904)
..++.|+++++.+..++.+..+++|++|+++ ++.+..++ ++.+++|++|++++| .++ .+| ++.+++|++|++
T Consensus 42 ~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls-~n~l~~~~---~~~l~~L~~L~Ls~N-~l~-~~~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDMTGIEKLTGLTKLICT-SNNITTLD---LSQNTNLTYLACDSN-KLT-NLD--VTPLTKLTYLNC 113 (457)
T ss_dssp TTCCEEECCSSCCCCCTTGGGCTTCSEEECC-SSCCSCCC---CTTCTTCSEEECCSS-CCS-CCC--CTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcccChhhcccCCCCEEEcc-CCcCCeEc---cccCCCCCEEECcCC-CCc-eee--cCCCCcCCEEEC
Confidence 4555666666655555555556666666666 33454443 455666666666666 555 443 555666666666
Q ss_pred ccCcccccchhhhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCCcc-cccCC----CCccccCCCccchHh
Q 037222 597 SRTEIQELPEELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYEC-FHEAP----EDSVLFGGGEVLVQE 671 (904)
Q Consensus 597 ~~~~i~~Lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~-~~~~~----~~~~~~~~~~~~~~~ 671 (904)
++|.++.+| ++.+++|++|++++| .++.+| ++++++|++|++.+|.... ..+.. ....+.......+.
T Consensus 114 ~~N~l~~l~--~~~l~~L~~L~l~~N-~l~~l~---l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~- 186 (457)
T 3bz5_A 114 DTNKLTKLD--VSQNPLLTYLNCARN-TLTEID---VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD- 186 (457)
T ss_dssp CSSCCSCCC--CTTCTTCCEEECTTS-CCSCCC---CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC-
T ss_pred CCCcCCeec--CCCCCcCCEEECCCC-ccceec---cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec-
Confidence 666655554 555666666666655 455543 4455566666665553221 00000 00000000000011
Q ss_pred hcCCCCCcEEEEEecchhhHHHhhhcccccccceeeEecccCCCcchhhhhhhcccCccCceeecccCCcceeeeccccc
Q 037222 672 LLGLKYLEVLELTLGSYQALQIFLSSNKLKSCIRSLFLQLAGDTKSIIDAAAFADLNHLNELYIYEGIELEELKIDYTEI 751 (904)
Q Consensus 672 l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~ 751 (904)
+..+++|+.|+++.+....+. ...+++|+.|+++++.-.. + .+..+++|+.|++++|.... +.+
T Consensus 187 l~~l~~L~~L~l~~N~l~~~~-----l~~l~~L~~L~Ls~N~l~~-i----p~~~l~~L~~L~l~~N~l~~-~~~----- 250 (457)
T 3bz5_A 187 VSQNKLLNRLNCDTNNITKLD-----LNQNIQLTFLDCSSNKLTE-I----DVTPLTQLTYFDCSVNPLTE-LDV----- 250 (457)
T ss_dssp CTTCTTCCEEECCSSCCSCCC-----CTTCTTCSEEECCSSCCSC-C----CCTTCTTCSEEECCSSCCSC-CCC-----
T ss_pred cccCCCCCEEECcCCcCCeec-----cccCCCCCEEECcCCcccc-c----CccccCCCCEEEeeCCcCCC-cCH-----
Confidence 334455555555444333221 1112455555555543222 1 13445555555555553221 111
Q ss_pred cccccCCcccC----------CccEEeEeccCCCCcCcccccCCCccEEeEecCccchhhcccCcccCCccccCCCCCCC
Q 037222 752 VRKRREPFVFR----------SLHRVTIFSCGKLKDVTFLVFAPNLKSLELLQCDAMEEIISVGEIAETPEMMGHISPFE 821 (904)
Q Consensus 752 ~~~~~~~~~l~----------~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~ 821 (904)
..++ +|+.|++++|.....+| .+.+++|+.|+|++|..+..++... .....+ .+..++
T Consensus 251 -------~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n~~l~~l~~~~--~~L~~L--~l~~~~ 318 (457)
T 3bz5_A 251 -------STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHNTQLYLLDCQA--AGITEL--DLSQNP 318 (457)
T ss_dssp -------TTCTTCCEEECTTCCCSCCCCTTCTTCCEEE-CTTCTTCCCCCCTTCTTCCEEECTT--CCCSCC--CCTTCT
T ss_pred -------HHCCCCCEEeccCCCCCEEECCCCccCCccc-ccccccCCEEECCCCcccceeccCC--CcceEe--chhhcc
Confidence 1222 33334444443333332 3456666666666666555544310 000001 244556
Q ss_pred cccEeecccccccccccCCCCCCCCcceEeeccCCCCCCC
Q 037222 822 NLQSLHLSYLPILRSIYWKPLPFTHLKKMEVRRCDQLRRL 861 (904)
Q Consensus 822 ~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~~L~~l 861 (904)
+|+.|+++++. ++.++ ...+++|+.|+++++ +++.+
T Consensus 319 ~L~~L~L~~N~-l~~l~--l~~l~~L~~L~l~~N-~l~~l 354 (457)
T 3bz5_A 319 KLVYLYLNNTE-LTELD--VSHNTKLKSLSCVNA-HIQDF 354 (457)
T ss_dssp TCCEEECTTCC-CSCCC--CTTCTTCSEEECCSS-CCCBC
T ss_pred cCCEEECCCCc-ccccc--cccCCcCcEEECCCC-CCCCc
Confidence 66666666653 55542 445667777776652 44443
No 28
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.84 E-value=1e-19 Score=223.17 Aligned_cols=150 Identities=17% Similarity=0.194 Sum_probs=126.6
Q ss_pred eEEEEcCCCcccCcccccccceeEEEeecccccccc--CCCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCC
Q 037222 498 HFLVCAGAGLEQAPAVRESENVTRLSLMQNQIKILS--EVPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCG 575 (904)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~ 575 (904)
..+.+.+..+..+|. .+..+++|++++|.+..+. .+..+++|++|+++++.....+++..|.++++|++|+|++|
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N- 83 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS- 83 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC-
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC-
Confidence 455666777888887 6679999999999998764 36899999999999765677787777999999999999999
Q ss_pred CcccccCccccccccCcEeecccCcccc-cchh--hhcCCCCcEeeccccccccccc-hhhhcCCCCCceeeecccCCcc
Q 037222 576 NFTFQLPLGMSKLGSLELFDISRTEIQE-LPEE--LKLLVNLKCLNLRWTSKLIRIP-RQLISNSSGLRVLRMFATGYEC 651 (904)
Q Consensus 576 ~i~~~lp~~i~~L~~L~~L~l~~~~i~~-Lp~~--~~~L~~L~~L~l~~~~~l~~lp-~~~i~~L~~L~~L~l~~~~~~~ 651 (904)
.+....|..++++++|++|+|++|.+.. +|.. ++++++|++|++++| .+..++ ...++++++|++|++.+|.+..
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCCcCCe
Confidence 8884568999999999999999999875 5655 899999999999999 566653 2348999999999999987754
No 29
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.84 E-value=1.2e-20 Score=223.59 Aligned_cols=112 Identities=16% Similarity=0.317 Sum_probs=89.7
Q ss_pred CCCCCCceEEEeecCccccc------------------ccchhhc--CCCcccEEEeecCCCcccccCccccccccCcEe
Q 037222 535 VPTCPDLLTLFLDFNEELEM------------------IADGFFQ--FMPSLKVLKISNCGNFTFQLPLGMSKLGSLELF 594 (904)
Q Consensus 535 ~~~~~~L~~L~l~~~~~l~~------------------~~~~~~~--~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L 594 (904)
+.++++|++|+++ ++.+.. +|.. +. ++++|++|++++| .+.+.+|..++++++|++|
T Consensus 202 l~~l~~L~~L~Ls-~n~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L 278 (636)
T 4eco_A 202 VMRLTKLRQFYMG-NSPFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNC-PNLTKLPTFLKALPEMQLI 278 (636)
T ss_dssp GGGCTTCCEEEEE-SCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECC-TTCSSCCTTTTTCSSCCEE
T ss_pred HhcccCCCEEECc-CCccccccccccccccccchhcccCchh-hhhcccCCCCEEEecCC-cCCccChHHHhcCCCCCEE
Confidence 4678888888888 445666 7766 56 8888899999888 7666888888888889999
Q ss_pred ecccCc-cc--ccchhhhcC------CCCcEeeccccccccccch-hhhcCCCCCceeeecccCCc
Q 037222 595 DISRTE-IQ--ELPEELKLL------VNLKCLNLRWTSKLIRIPR-QLISNSSGLRVLRMFATGYE 650 (904)
Q Consensus 595 ~l~~~~-i~--~Lp~~~~~L------~~L~~L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~ 650 (904)
++++|. ++ .+|..++.+ ++|++|++++| .++.+|. +.++++++|++|++.+|.+.
T Consensus 279 ~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~l~~l~~L~~L~L~~N~l~ 343 (636)
T 4eco_A 279 NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETSLQKMKKLGMLECLYNQLE 343 (636)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHHHTTCTTCCEEECCSCCCE
T ss_pred ECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCccCchhhhccCCCCCEEeCcCCcCc
Confidence 988887 77 488888776 88899998888 6778887 23888888999988888765
No 30
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.84 E-value=3.8e-20 Score=219.35 Aligned_cols=150 Identities=17% Similarity=0.148 Sum_probs=124.3
Q ss_pred eEEEeeccccccccCCCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccccccccCcEeecccC
Q 037222 520 TRLSLMQNQIKILSEVPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELFDISRT 599 (904)
Q Consensus 520 r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~l~~~ 599 (904)
+.+..+++.+..+|.. -.+++++|+++ ++.+..+++..|.++++|++|++++| .++...|..++++++|++|++++|
T Consensus 14 ~~~~c~~~~l~~ip~~-~~~~l~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~i~~~~~~~l~~L~~L~Ls~n 90 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPDD-IPSSTKNIDLS-FNPLKILKSYSFSNFSELQWLDLSRC-EIETIEDKAWHGLHHLSNLILTGN 90 (606)
T ss_dssp TEEECTTSCCSSCCTT-SCTTCCEEECT-TSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTC
T ss_pred CceEccCCCcccCCCC-CCCCcCEEECC-CCCcCEeChhhccCCccCcEEeCCCC-cccccCHHHhhchhhcCEeECCCC
Confidence 3566777777777663 23899999999 66788888877999999999999999 898445778999999999999999
Q ss_pred ccccc-chhhhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCCcccccCCCCccccCCCccchHhhcCCCCC
Q 037222 600 EIQEL-PEELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYECFHEAPEDSVLFGGGEVLVQELLGLKYL 678 (904)
Q Consensus 600 ~i~~L-p~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 678 (904)
.+..+ |..++++++|++|++++| .+..+|...++++++|++|++.+|.+... .....+..+++|
T Consensus 91 ~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--------------~lp~~~~~l~~L 155 (606)
T 3vq2_A 91 PIQSFSPGSFSGLTSLENLVAVET-KLASLESFPIGQLITLKKLNVAHNFIHSC--------------KLPAYFSNLTNL 155 (606)
T ss_dssp CCCCCCTTSSTTCTTCCEEECTTS-CCCCSSSSCCTTCTTCCEEECCSSCCCCC--------------CCCGGGGTCTTC
T ss_pred cccccChhhcCCcccCCEEEccCC-ccccccccccCCCCCCCEEeCCCCcccce--------------echHhHhhcCCC
Confidence 99988 788999999999999999 78888855599999999999999987532 123457778888
Q ss_pred cEEEEEecc
Q 037222 679 EVLELTLGS 687 (904)
Q Consensus 679 ~~L~l~~~~ 687 (904)
+.|+++.+.
T Consensus 156 ~~L~Ls~n~ 164 (606)
T 3vq2_A 156 VHVDLSYNY 164 (606)
T ss_dssp CEEECCSSC
T ss_pred CEEEccCCc
Confidence 888887654
No 31
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.84 E-value=7.4e-20 Score=198.29 Aligned_cols=82 Identities=24% Similarity=0.382 Sum_probs=48.2
Q ss_pred CCcccEEEeecCCCcccccCccccccccCcEeecccCcccccchhhhcCCCCcEeeccccccccccchhhhcCCCCCcee
Q 037222 563 MPSLKVLKISNCGNFTFQLPLGMSKLGSLELFDISRTEIQELPEELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVL 642 (904)
Q Consensus 563 l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~l~~~~i~~Lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L 642 (904)
..++++|+++++ .++ .+|..++++++|++|++++|.+..+|..++++++|++|++++| .++.+|.. ++++++|++|
T Consensus 80 ~~~l~~L~L~~n-~l~-~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~-l~~l~~L~~L 155 (328)
T 4fcg_A 80 QPGRVALELRSV-PLP-QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPAS-IASLNRLREL 155 (328)
T ss_dssp STTCCEEEEESS-CCS-SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGG-GGGCTTCCEE
T ss_pred ccceeEEEccCC-Cch-hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHH-HhcCcCCCEE
Confidence 345556666666 555 5665566666666666666655566655666666666666655 45555554 5566666666
Q ss_pred eecccC
Q 037222 643 RMFATG 648 (904)
Q Consensus 643 ~l~~~~ 648 (904)
++.+|.
T Consensus 156 ~L~~n~ 161 (328)
T 4fcg_A 156 SIRACP 161 (328)
T ss_dssp EEEEET
T ss_pred ECCCCC
Confidence 665543
No 32
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.83 E-value=1.9e-20 Score=225.61 Aligned_cols=187 Identities=14% Similarity=0.177 Sum_probs=132.7
Q ss_pred cccccccC-CCCCCCceEEEeecCccccc------------------ccchh-hcCCCcccEEEeecCCCcccccCcccc
Q 037222 527 NQIKILSE-VPTCPDLLTLFLDFNEELEM------------------IADGF-FQFMPSLKVLKISNCGNFTFQLPLGMS 586 (904)
Q Consensus 527 ~~~~~l~~-~~~~~~L~~L~l~~~~~l~~------------------~~~~~-~~~l~~Lr~L~l~~~~~i~~~lp~~i~ 586 (904)
|.+..+|. +..+++|++|+++ ++.+.. +|..+ |.++++|++|+|++| .+.+.+|..++
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls-~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N-~l~~~iP~~l~ 512 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFA-NSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNC-PNMTQLPDFLY 512 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEE-SCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESC-TTCCSCCGGGG
T ss_pred CcccchhHHHhcCCCCCEEECc-CCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCC-CCCccChHHHh
Confidence 44554554 5789999999999 555766 88774 449999999999999 76669999999
Q ss_pred ccccCcEeecccCc-ccc--cchhhhcCC-------CCcEeeccccccccccch-hhhcCCCCCceeeecccCCcccccC
Q 037222 587 KLGSLELFDISRTE-IQE--LPEELKLLV-------NLKCLNLRWTSKLIRIPR-QLISNSSGLRVLRMFATGYECFHEA 655 (904)
Q Consensus 587 ~L~~L~~L~l~~~~-i~~--Lp~~~~~L~-------~L~~L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~~~~~~ 655 (904)
+|++|++|++++|. +.. +|..++++. +|++|++++| .+..+|. +.++++++|++|++.+|.+..+.
T Consensus 513 ~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-- 589 (876)
T 4ecn_A 513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHNKVRHLE-- 589 (876)
T ss_dssp GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCBCCCHHHHTTCTTCCEEECTTSCCCBCC--
T ss_pred CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCccCChhhhhcCCCCCEEECCCCCcccch--
Confidence 99999999999997 874 898888776 9999999999 7789998 23999999999999999876322
Q ss_pred CCCccccCCCccchHhhcCCCCCcEEEEEecchhhHHHhhhccccccc-ceeeEecccCCCcchhhhhhhccc--CccCc
Q 037222 656 PEDSVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQIFLSSNKLKSC-IRSLFLQLAGDTKSIIDAAAFADL--NHLNE 732 (904)
Q Consensus 656 ~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~-L~~L~L~~~~~~~~~~~~~~l~~~--~~L~~ 732 (904)
.+..+++|+.|+++.+....++ .....+++ |+.|.|++|... .++ ..+..+ ++|+.
T Consensus 590 ---------------~~~~L~~L~~L~Ls~N~l~~lp---~~l~~l~~~L~~L~Ls~N~L~-~lp--~~~~~~~~~~L~~ 648 (876)
T 4ecn_A 590 ---------------AFGTNVKLTDLKLDYNQIEEIP---EDFCAFTDQVEGLGFSHNKLK-YIP--NIFNAKSVYVMGS 648 (876)
T ss_dssp ---------------CCCTTSEESEEECCSSCCSCCC---TTSCEECTTCCEEECCSSCCC-SCC--SCCCTTCSSCEEE
T ss_pred ---------------hhcCCCcceEEECcCCccccch---HHHhhccccCCEEECcCCCCC-cCc--hhhhccccCCCCE
Confidence 3555666666666655433222 11222234 666666665432 221 222222 23666
Q ss_pred eeecccC
Q 037222 733 LYIYEGI 739 (904)
Q Consensus 733 L~l~~~~ 739 (904)
|++++|.
T Consensus 649 L~Ls~N~ 655 (876)
T 4ecn_A 649 VDFSYNK 655 (876)
T ss_dssp EECCSSC
T ss_pred EECcCCc
Confidence 6665554
No 33
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.83 E-value=2.2e-19 Score=210.49 Aligned_cols=127 Identities=17% Similarity=0.203 Sum_probs=110.7
Q ss_pred eeEEEeeccccccccCCCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccccccccCcEeeccc
Q 037222 519 VTRLSLMQNQIKILSEVPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELFDISR 598 (904)
Q Consensus 519 ~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~l~~ 598 (904)
.++++++++.+..+|... .++|++|+++ ++.+..+++..|.++++|++|++++| .++...|..++.+++|++|++++
T Consensus 33 ~~~l~ls~~~L~~ip~~~-~~~L~~L~Ls-~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDL-PPRTKALSLS-QNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp CCEEECTTSCCCSCCTTS-CTTCCEEECC-SSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTT
T ss_pred CcEEEcCCCCCccCCCCC-CCCcCEEECC-CCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCC
Confidence 478999999998887632 3899999999 66788888877999999999999999 99844578899999999999999
Q ss_pred CcccccchhhhcCCCCcEeeccccccccccch-hhhcCCCCCceeeecccCCcc
Q 037222 599 TEIQELPEELKLLVNLKCLNLRWTSKLIRIPR-QLISNSSGLRVLRMFATGYEC 651 (904)
Q Consensus 599 ~~i~~Lp~~~~~L~~L~~L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~~ 651 (904)
|.++.+|.. .+++|++|++++| .+..+|. ..++++++|++|++.+|.+..
T Consensus 110 N~l~~lp~~--~l~~L~~L~Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 110 NRLQNISCC--PMASLRHLDLSFN-DFDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp SCCCEECSC--CCTTCSEEECCSS-CCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred CcCCccCcc--ccccCCEEECCCC-CccccCchHhhcccCcccEEecCCCcccc
Confidence 999999988 8999999999999 6787652 349999999999999987754
No 34
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.83 E-value=6e-20 Score=213.32 Aligned_cols=125 Identities=18% Similarity=0.177 Sum_probs=109.3
Q ss_pred eEEEeeccccccccCCCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccccccccCcEeecccC
Q 037222 520 TRLSLMQNQIKILSEVPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELFDISRT 599 (904)
Q Consensus 520 r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~l~~~ 599 (904)
+.++++++.+..+|.... ++|+.|+++ ++.+..+++..|.++++|++|++++| .+++..|..++++++|++|++++|
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls-~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNIS-QNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECC-SSCCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCccccccccc-ccccEEECC-CCcccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCC
Confidence 578899999988876433 899999999 66688888777999999999999999 998445889999999999999999
Q ss_pred cccccchhhhcCCCCcEeeccccccccc--cchhhhcCCCCCceeeecccCCcc
Q 037222 600 EIQELPEELKLLVNLKCLNLRWTSKLIR--IPRQLISNSSGLRVLRMFATGYEC 651 (904)
Q Consensus 600 ~i~~Lp~~~~~L~~L~~L~l~~~~~l~~--lp~~~i~~L~~L~~L~l~~~~~~~ 651 (904)
.++.+|.. .+++|++|++++| .++. +|.. ++++++|++|++.+|.+..
T Consensus 80 ~l~~lp~~--~l~~L~~L~L~~N-~l~~~~~p~~-~~~l~~L~~L~L~~n~l~~ 129 (520)
T 2z7x_B 80 KLVKISCH--PTVNLKHLDLSFN-AFDALPICKE-FGNMSQLKFLGLSTTHLEK 129 (520)
T ss_dssp CCCEEECC--CCCCCSEEECCSS-CCSSCCCCGG-GGGCTTCCEEEEEESSCCG
T ss_pred ceeecCcc--ccCCccEEeccCC-ccccccchhh-hccCCcceEEEecCcccch
Confidence 99999988 8999999999999 6665 5555 9999999999999988753
No 35
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=3.7e-20 Score=200.62 Aligned_cols=108 Identities=25% Similarity=0.387 Sum_probs=89.8
Q ss_pred CCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccccccccCcEeecccCcccccchhhhcCCCCcE
Q 037222 537 TCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELFDISRTEIQELPEELKLLVNLKC 616 (904)
Q Consensus 537 ~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~l~~~~i~~Lp~~~~~L~~L~~ 616 (904)
..++++.|+++ ++.+..+|.. +.++++|++|++++| .++ .+|..++++++|++|++++|.+..+|..++++++|++
T Consensus 79 ~~~~l~~L~L~-~n~l~~lp~~-l~~l~~L~~L~L~~n-~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~ 154 (328)
T 4fcg_A 79 TQPGRVALELR-SVPLPQFPDQ-AFRLSHLQHMTIDAA-GLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRE 154 (328)
T ss_dssp TSTTCCEEEEE-SSCCSSCCSC-GGGGTTCSEEEEESS-CCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCE
T ss_pred cccceeEEEcc-CCCchhcChh-hhhCCCCCEEECCCC-Ccc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCE
Confidence 35678889998 5667788887 566999999999999 999 9999999999999999999999999999999999999
Q ss_pred eeccccccccccchhhhcC---------CCCCceeeecccCC
Q 037222 617 LNLRWTSKLIRIPRQLISN---------SSGLRVLRMFATGY 649 (904)
Q Consensus 617 L~l~~~~~l~~lp~~~i~~---------L~~L~~L~l~~~~~ 649 (904)
|++++|..+..+|.. +.. +++|++|++.+|.+
T Consensus 155 L~L~~n~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n~l 195 (328)
T 4fcg_A 155 LSIRACPELTELPEP-LASTDASGEHQGLVNLQSLRLEWTGI 195 (328)
T ss_dssp EEEEEETTCCCCCSC-SEEEC-CCCEEESTTCCEEEEEEECC
T ss_pred EECCCCCCccccChh-HhhccchhhhccCCCCCEEECcCCCc
Confidence 999998778888875 443 66666666665544
No 36
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.83 E-value=4.2e-20 Score=210.84 Aligned_cols=315 Identities=17% Similarity=0.180 Sum_probs=214.6
Q ss_pred ccccceeEEEeeccccc-ccc--CCCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCcc--cccc
Q 037222 514 RESENVTRLSLMQNQIK-ILS--EVPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLG--MSKL 588 (904)
Q Consensus 514 ~~~~~~r~l~l~~~~~~-~l~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~--i~~L 588 (904)
.....++.|++.+|.+. .++ .+..+++|++|+++ ++.+..+++..|.++++|++|++++| .+++..|.. ++.+
T Consensus 51 ~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~l 128 (455)
T 3v47_A 51 SRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD-YNQFLQLETGAFNGLANLEVLTLTQC-NLDGAVLSGNFFKPL 128 (455)
T ss_dssp SSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT-TCTTCEECTTTTTTCTTCCEEECTTS-CCBTHHHHSSTTTTC
T ss_pred ccCccccEEECcCCcccceECcccccccccCCEEeCC-CCccCccChhhccCcccCCEEeCCCC-CCCccccCcccccCc
Confidence 34568999999998775 343 25889999999999 55677776666899999999999999 887445555 8899
Q ss_pred ccCcEeecccCccccc-chh-hhcCCCCcEeeccccccccccchhhhcCC--CCCceeeecccCCcccccCCC-------
Q 037222 589 GSLELFDISRTEIQEL-PEE-LKLLVNLKCLNLRWTSKLIRIPRQLISNS--SGLRVLRMFATGYECFHEAPE------- 657 (904)
Q Consensus 589 ~~L~~L~l~~~~i~~L-p~~-~~~L~~L~~L~l~~~~~l~~lp~~~i~~L--~~L~~L~l~~~~~~~~~~~~~------- 657 (904)
++|++|++++|.+..+ |.. +.++++|++|++++| .+..++...+..+ .+|+.|++.+|.+........
T Consensus 129 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~ 207 (455)
T 3v47_A 129 TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN-KVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGN 207 (455)
T ss_dssp TTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTC-CBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCC
T ss_pred ccCCEEECCCCccCccCcccccCCCCcccEEeCCCC-cccccChhhhhccccccccccccccCcccccchhhcccccccc
Confidence 9999999999999887 555 789999999999999 5666554445554 445555555554433211100
Q ss_pred --------CccccCC--Ccc---chHhhcCCCCCcEEEEEecchhhH----------HHhhhcccccccceeeEecccCC
Q 037222 658 --------DSVLFGG--GEV---LVQELLGLKYLEVLELTLGSYQAL----------QIFLSSNKLKSCIRSLFLQLAGD 714 (904)
Q Consensus 658 --------~~~~~~~--~~~---~~~~l~~L~~L~~L~l~~~~~~~~----------~~l~~~~~~~~~L~~L~L~~~~~ 714 (904)
...+... ... .+......++|+.|+++.+..... ..........++|+.|+++++..
T Consensus 208 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l 287 (455)
T 3v47_A 208 PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKI 287 (455)
T ss_dssp TTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCC
T ss_pred ccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccc
Confidence 0000000 111 122223347777787764321110 00000000125899999998865
Q ss_pred CcchhhhhhhcccCccCceeecccCCcceeeeccccccccccCCcccCCccEEeEeccCCCCcCc--ccccCCCccEEeE
Q 037222 715 TKSIIDAAAFADLNHLNELYIYEGIELEELKIDYTEIVRKRREPFVFRSLHRVTIFSCGKLKDVT--FLVFAPNLKSLEL 792 (904)
Q Consensus 715 ~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L 792 (904)
..... ..+..+++|++|++++|.... +.+..+ ..+++|+.|+|++| .+..++ .+..+++|++|+|
T Consensus 288 ~~~~~--~~~~~l~~L~~L~Ls~n~l~~-~~~~~~---------~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 288 FALLK--SVFSHFTDLEQLTLAQNEINK-IDDNAF---------WGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVLDL 354 (455)
T ss_dssp CEECT--TTTTTCTTCCEEECTTSCCCE-ECTTTT---------TTCTTCCEEECCSS-CCCEECGGGGTTCTTCCEEEC
T ss_pred cccch--hhcccCCCCCEEECCCCcccc-cChhHh---------cCcccCCEEECCCC-ccCCcChhHhcCcccCCEEEC
Confidence 44333 467889999999999886443 334343 37899999999999 455543 3789999999999
Q ss_pred ecCccchhhcccCcccCCccccCCCCCCCcccEeecccccccccccCCC-CCCCCcceEeeccCCC
Q 037222 793 LQCDAMEEIISVGEIAETPEMMGHISPFENLQSLHLSYLPILRSIYWKP-LPFTHLKKMEVRRCDQ 857 (904)
Q Consensus 793 ~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i~~~~-~~~~~L~~L~i~~C~~ 857 (904)
++|. ++.++. ..+..+++|+.|+|+++. ++.++... ..+++|+.|++++++-
T Consensus 355 s~N~-l~~~~~-----------~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 355 SYNH-IRALGD-----------QSFLGLPNLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp CSSC-CCEECT-----------TTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCCc-ccccCh-----------hhccccccccEEECCCCc-cccCCHhHhccCCcccEEEccCCCc
Confidence 9975 444422 257789999999999975 77777543 5789999999998743
No 37
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.83 E-value=1.1e-19 Score=218.63 Aligned_cols=148 Identities=21% Similarity=0.241 Sum_probs=124.1
Q ss_pred EEEEcCCCcccCcccccccceeEEEeeccccccccC--CCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCC
Q 037222 499 FLVCAGAGLEQAPAVRESENVTRLSLMQNQIKILSE--VPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGN 576 (904)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~ 576 (904)
.+...+..+..+|.. -...+++|++++|.+..++. +..+++|++|+++ ++.+..+++..|.++++|++|++++| .
T Consensus 8 ~~~cs~~~L~~ip~~-~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~L~~n-~ 84 (680)
T 1ziw_A 8 VADCSHLKLTQVPDD-LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVG-FNTISKLEPELCQKLPMLKVLNLQHN-E 84 (680)
T ss_dssp EEECCSSCCSSCCSC-SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECC-SSCCCCCCTTHHHHCTTCCEEECCSS-C
T ss_pred eeECCCCCccccccc-cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECC-CCccCccCHHHHhcccCcCEEECCCC-c
Confidence 444556666777753 23689999999999888765 5889999999999 56688888788999999999999999 9
Q ss_pred cccccCc-cccccccCcEeecccCcccccc-hhhhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCCcc
Q 037222 577 FTFQLPL-GMSKLGSLELFDISRTEIQELP-EELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYEC 651 (904)
Q Consensus 577 i~~~lp~-~i~~L~~L~~L~l~~~~i~~Lp-~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~ 651 (904)
++ .+|. .++++++|++|++++|.+..+| ..++++++|++|++++| .+..++.+.++++++|++|++.+|.+..
T Consensus 85 l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 159 (680)
T 1ziw_A 85 LS-QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLSNNKIQA 159 (680)
T ss_dssp CC-CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSS-CCSCCCCCSSSCCTTCCEEECCSSCCCC
T ss_pred cC-ccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCC-cccccCchhhcccccCCEEEccCCcccc
Confidence 99 7776 5999999999999999999887 57899999999999999 6676665558899999999999987654
No 38
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.83 E-value=3.4e-20 Score=225.06 Aligned_cols=272 Identities=16% Similarity=0.060 Sum_probs=160.0
Q ss_pred CCcccEEEeecCCCcccccCccccccccCcEeecccCccc-ccchhhhcCCCCcEeeccccccccccchhhhcCCCCCce
Q 037222 563 MPSLKVLKISNCGNFTFQLPLGMSKLGSLELFDISRTEIQ-ELPEELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRV 641 (904)
Q Consensus 563 l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~l~~~~i~-~Lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~ 641 (904)
+++|++|++++| .+++.+|..++++++|++|++++|.+. .+|..++.+++|++|++++|.....+|.. +..+++|++
T Consensus 393 ~~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~ 470 (768)
T 3rgz_A 393 KNTLQELYLQNN-GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE-LMYVKTLET 470 (768)
T ss_dssp TCCCCEEECCSS-EEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCE
T ss_pred cCCccEEECCCC-ccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHH-HcCCCCceE
Confidence 344444444444 444344445555555555555555443 34445555555555555555222234433 445555555
Q ss_pred eeecccCCcccccCCCCccccCCCccchHhhcCCCCCcEEEEEecchhhHHHhhhcccccccceeeEecccCCCcchhhh
Q 037222 642 LRMFATGYECFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQIFLSSNKLKSCIRSLFLQLAGDTKSIIDA 721 (904)
Q Consensus 642 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~ 721 (904)
|++.+|.+.. .....+..+++|+.|+++.+..... ++.....+++|+.|+|++|......+
T Consensus 471 L~L~~N~l~~---------------~~p~~l~~l~~L~~L~L~~N~l~~~--~p~~~~~l~~L~~L~L~~N~l~~~~p-- 531 (768)
T 3rgz_A 471 LILDFNDLTG---------------EIPSGLSNCTNLNWISLSNNRLTGE--IPKWIGRLENLAILKLSNNSFSGNIP-- 531 (768)
T ss_dssp EECCSSCCCS---------------CCCGGGGGCTTCCEEECCSSCCCSC--CCGGGGGCTTCCEEECCSSCCEEECC--
T ss_pred EEecCCcccC---------------cCCHHHhcCCCCCEEEccCCccCCc--CChHHhcCCCCCEEECCCCcccCcCC--
Confidence 5555544431 1233466677777777765543311 11111223577777777765443332
Q ss_pred hhhcccCccCceeecccCCcceeeeccccc--------------------------------------------------
Q 037222 722 AAFADLNHLNELYIYEGIELEELKIDYTEI-------------------------------------------------- 751 (904)
Q Consensus 722 ~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~-------------------------------------------------- 751 (904)
..+..+++|+.|++++|.....+...+...
T Consensus 532 ~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 611 (768)
T 3rgz_A 532 AELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRN 611 (768)
T ss_dssp GGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTC
T ss_pred HHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccc
Confidence 456677777777777765332221111000
Q ss_pred ----------cccccCCcccCCccEEeEeccCCCCcCc-ccccCCCccEEeEecCccchhhcccCcccCCccccCCCCCC
Q 037222 752 ----------VRKRREPFVFRSLHRVTIFSCGKLKDVT-FLVFAPNLKSLELLQCDAMEEIISVGEIAETPEMMGHISPF 820 (904)
Q Consensus 752 ----------~~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~ 820 (904)
+..+.....+++|+.|+|++|.....+| .++.+++|+.|+|++|.....++. .++.+
T Consensus 612 ~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~------------~l~~L 679 (768)
T 3rgz_A 612 PCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD------------EVGDL 679 (768)
T ss_dssp CSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCG------------GGGGC
T ss_pred ccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCCh------------HHhCC
Confidence 0112223457889999999996554555 489999999999999765555544 57789
Q ss_pred CcccEeecccccccccccCCCCCCCCcceEeeccCCCCCCCCCCCCc
Q 037222 821 ENLQSLHLSYLPILRSIYWKPLPFTHLKKMEVRRCDQLRRLPLDSNS 867 (904)
Q Consensus 821 ~~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~~L~~lp~~~~~ 867 (904)
++|+.|+|+++.--..+|.....+++|+.|++++++--..+|.++..
T Consensus 680 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~ 726 (768)
T 3rgz_A 680 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQF 726 (768)
T ss_dssp TTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSG
T ss_pred CCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhh
Confidence 99999999998744477777788999999999998555567776543
No 39
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.83 E-value=2.6e-20 Score=226.05 Aligned_cols=319 Identities=18% Similarity=0.157 Sum_probs=167.5
Q ss_pred ccceeEEEeecccccc-c-cCCCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCcccccc-ccCc
Q 037222 516 SENVTRLSLMQNQIKI-L-SEVPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKL-GSLE 592 (904)
Q Consensus 516 ~~~~r~l~l~~~~~~~-l-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L-~~L~ 592 (904)
...+++|++.+|.+.. + ..+..+++|++|+++++.-...+|. ..+++|++|++++| .+++.+|..+..+ ++|+
T Consensus 222 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~---~~l~~L~~L~L~~n-~l~~~ip~~~~~~~~~L~ 297 (768)
T 3rgz_A 222 CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP---LPLKSLQYLSLAEN-KFTGEIPDFLSGACDTLT 297 (768)
T ss_dssp CCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCC---CCCTTCCEEECCSS-EEEESCCCCSCTTCTTCS
T ss_pred CCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCc---cccCCCCEEECcCC-ccCCccCHHHHhhcCcCC
Confidence 3455555555555442 1 1234555555555553221112222 14555555555555 4444455555443 5555
Q ss_pred EeecccCccc-ccchhhhcCCCCcEeecccccccc-ccchhhhcCCCCCceeeecccCCcccccCC--------CCcccc
Q 037222 593 LFDISRTEIQ-ELPEELKLLVNLKCLNLRWTSKLI-RIPRQLISNSSGLRVLRMFATGYECFHEAP--------EDSVLF 662 (904)
Q Consensus 593 ~L~l~~~~i~-~Lp~~~~~L~~L~~L~l~~~~~l~-~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~--------~~~~~~ 662 (904)
+|++++|.+. .+|..++.+++|++|++++| .+. .+|...+.++++|++|++.+|.+....... ....+.
T Consensus 298 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls 376 (768)
T 3rgz_A 298 GLDLSGNHFYGAVPPFFGSCSLLESLALSSN-NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLS 376 (768)
T ss_dssp EEECCSSEEEECCCGGGGGCTTCCEEECCSS-EEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECC
T ss_pred EEECcCCcCCCccchHHhcCCCccEEECCCC-cccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEcc
Confidence 5555555444 44555555555555555555 232 455443455555555555554432100000 000000
Q ss_pred CC--CccchHhhcC--CCCCcEEEEEecchhhHHHhhhcccccccceeeEecccCCCcchhhhhhhcccCccCceeeccc
Q 037222 663 GG--GEVLVQELLG--LKYLEVLELTLGSYQALQIFLSSNKLKSCIRSLFLQLAGDTKSIIDAAAFADLNHLNELYIYEG 738 (904)
Q Consensus 663 ~~--~~~~~~~l~~--L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 738 (904)
.. ....+..+.. +++|+.|++..+..... ++.....+++|+.|++++|....... ..+..+++|+.|++++|
T Consensus 377 ~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~Ls~N~l~~~~p--~~l~~l~~L~~L~L~~n 452 (768)
T 3rgz_A 377 SNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK--IPPTLSNCSELVSLHLSFNYLSGTIP--SSLGSLSKLRDLKLWLN 452 (768)
T ss_dssp SSEEEEECCTTTTCSTTCCCCEEECCSSEEEEE--CCGGGGGCTTCCEEECCSSEEESCCC--GGGGGCTTCCEEECCSS
T ss_pred CCCcCCCcChhhhhcccCCccEEECCCCccccc--cCHHHhcCCCCCEEECcCCcccCccc--HHHhcCCCCCEEECCCC
Confidence 00 0011112222 55666666654433210 11111223567777777664322222 35666777777777776
Q ss_pred CCcceeeeccccccccccCCcccCCccEEeEeccCCCCcCc-ccccCCCccEEeEecCccchhhcccCcccCCccccCCC
Q 037222 739 IELEELKIDYTEIVRKRREPFVFRSLHRVTIFSCGKLKDVT-FLVFAPNLKSLELLQCDAMEEIISVGEIAETPEMMGHI 817 (904)
Q Consensus 739 ~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~ 817 (904)
..... .+..+ ..+++|+.|++++|.....+| .+..+++|+.|+|++|.....++. .+
T Consensus 453 ~l~~~-~p~~~---------~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~------------~~ 510 (768)
T 3rgz_A 453 MLEGE-IPQEL---------MYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK------------WI 510 (768)
T ss_dssp CCCSC-CCGGG---------GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCG------------GG
T ss_pred cccCc-CCHHH---------cCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCCh------------HH
Confidence 54332 23332 367788888888885443444 477888888888888764434433 46
Q ss_pred CCCCcccEeecccccccccccCCCCCCCCcceEeeccCCCCCCCCCCC
Q 037222 818 SPFENLQSLHLSYLPILRSIYWKPLPFTHLKKMEVRRCDQLRRLPLDS 865 (904)
Q Consensus 818 ~~~~~L~~L~L~~~~~L~~i~~~~~~~~~L~~L~i~~C~~L~~lp~~~ 865 (904)
..+++|+.|+|++|.-...++.....+++|+.|++++|+-...+|...
T Consensus 511 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~ 558 (768)
T 3rgz_A 511 GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558 (768)
T ss_dssp GGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGG
T ss_pred hcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHH
Confidence 678889999998887555677667778899999998875555666543
No 40
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.82 E-value=6.8e-20 Score=207.66 Aligned_cols=305 Identities=15% Similarity=0.168 Sum_probs=207.7
Q ss_pred EEEcCCCcccCcccccccceeEEEeeccccccccCCCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCccc
Q 037222 500 LVCAGAGLEQAPAVRESENVTRLSLMQNQIKILSEVPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTF 579 (904)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~ 579 (904)
+...+..+..+|.......+++|++++|.+..++ +..+++|+.|+++ ++.+..++ ++.+++|++|++++| .++
T Consensus 47 L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls-~N~l~~~~---~~~l~~L~~L~L~~N-~l~- 119 (457)
T 3bz5_A 47 LDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACD-SNKLTNLD---VTPLTKLTYLNCDTN-KLT- 119 (457)
T ss_dssp EECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECC-SSCCSCCC---CTTCTTCCEEECCSS-CCS-
T ss_pred EEccCCCcccChhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECc-CCCCceee---cCCCCcCCEEECCCC-cCC-
Confidence 3334445555565566678999999999888875 7889999999999 55677774 788999999999999 888
Q ss_pred ccCccccccccCcEeecccCcccccchhhhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCCcccccCCC-C
Q 037222 580 QLPLGMSKLGSLELFDISRTEIQELPEELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYECFHEAPE-D 658 (904)
Q Consensus 580 ~lp~~i~~L~~L~~L~l~~~~i~~Lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~-~ 658 (904)
.+| ++.+++|++|++++|.++.+| ++.+++|++|++++|..+..++ ++.+++|++|++.+|.+..+.+... .
T Consensus 120 ~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~l~l~~l~~ 192 (457)
T 3bz5_A 120 KLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITELDVSQNKL 192 (457)
T ss_dssp CCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCCCCCTTCTT
T ss_pred eec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccceeccccCCC
Confidence 675 889999999999999988875 7888889999998886666663 6688888888888887766432110 0
Q ss_pred ---ccccCCCccchHhhcCCCCCcEEEEEecchhhHHHhhhcccccccceeeEecccCCCcchhhhhhhcccCccCc---
Q 037222 659 ---SVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQIFLSSNKLKSCIRSLFLQLAGDTKSIIDAAAFADLNHLNE--- 732 (904)
Q Consensus 659 ---~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~--- 732 (904)
..........+ .+..+++|+.|+++.+....++ ...+++|+.|+++++.-... . +..+++|+.
T Consensus 193 L~~L~l~~N~l~~~-~l~~l~~L~~L~Ls~N~l~~ip-----~~~l~~L~~L~l~~N~l~~~-~----~~~l~~L~~L~l 261 (457)
T 3bz5_A 193 LNRLNCDTNNITKL-DLNQNIQLTFLDCSSNKLTEID-----VTPLTQLTYFDCSVNPLTEL-D----VSTLSKLTTLHC 261 (457)
T ss_dssp CCEEECCSSCCSCC-CCTTCTTCSEEECCSSCCSCCC-----CTTCTTCSEEECCSSCCSCC-C----CTTCTTCCEEEC
T ss_pred CCEEECcCCcCCee-ccccCCCCCEEECcCCcccccC-----ccccCCCCEEEeeCCcCCCc-C----HHHCCCCCEEec
Confidence 01111111122 4778899999999987766543 22357899999998854322 1 234455554
Q ss_pred -------eeecccCCcceeeeccccccccccCCcccCCccEEeEeccCCCCcCcc---------cccCCCccEEeEecCc
Q 037222 733 -------LYIYEGIELEELKIDYTEIVRKRREPFVFRSLHRVTIFSCGKLKDVTF---------LVFAPNLKSLELLQCD 796 (904)
Q Consensus 733 -------L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~---------l~~l~~L~~L~L~~c~ 796 (904)
|++++|.....+. ...+++|+.|++++|..+..+|. +..+++|+.|++++|.
T Consensus 262 ~~n~L~~L~l~~n~~~~~~~------------~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~ 329 (457)
T 3bz5_A 262 IQTDLLEIDLTHNTQLIYFQ------------AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTE 329 (457)
T ss_dssp TTCCCSCCCCTTCTTCCEEE------------CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCC
T ss_pred cCCCCCEEECCCCccCCccc------------ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCc
Confidence 4444444333221 13679999999999986665542 3445566666665532
Q ss_pred cchhhcccCcccCCccccCCCCCCCcccEeecccccccccccCCCCCCCCcceE-----eeccCCCCCCCCCC
Q 037222 797 AMEEIISVGEIAETPEMMGHISPFENLQSLHLSYLPILRSIYWKPLPFTHLKKM-----EVRRCDQLRRLPLD 864 (904)
Q Consensus 797 ~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i~~~~~~~~~L~~L-----~i~~C~~L~~lp~~ 864 (904)
++.+ .+..+++|+.|+++++. ++.+ +.|..| .+.+++++..+|..
T Consensus 330 -l~~l--------------~l~~l~~L~~L~l~~N~-l~~l-------~~L~~L~l~~n~l~g~~~~~~l~~l 379 (457)
T 3bz5_A 330 -LTEL--------------DVSHNTKLKSLSCVNAH-IQDF-------SSVGKIPALNNNFEAEGQTITMPKE 379 (457)
T ss_dssp -CSCC--------------CCTTCTTCSEEECCSSC-CCBC-------TTGGGSSGGGTSEEEEEEEEECCCB
T ss_pred -cccc--------------ccccCCcCcEEECCCCC-CCCc-------cccccccccCCcEEecceeeecCcc
Confidence 2222 36778999999999875 5543 455555 34455555556553
No 41
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.82 E-value=4.4e-19 Score=213.20 Aligned_cols=174 Identities=17% Similarity=0.175 Sum_probs=135.3
Q ss_pred EEEeeccccccccCCCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccccccccCcEeecccCc
Q 037222 521 RLSLMQNQIKILSEVPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELFDISRTE 600 (904)
Q Consensus 521 ~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~l~~~~ 600 (904)
.++.+++.+..+|... .+++++|+++ .+.+..+++..|.++++|++|++++| .+++..|..++++++|++|++++|.
T Consensus 8 ~~~cs~~~L~~ip~~~-~~~l~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~ 84 (680)
T 1ziw_A 8 VADCSHLKLTQVPDDL-PTNITVLNLT-HNQLRRLPAANFTRYSQLTSLDVGFN-TISKLEPELCQKLPMLKVLNLQHNE 84 (680)
T ss_dssp EEECCSSCCSSCCSCS-CTTCSEEECC-SSCCCCCCGGGGGGGTTCSEEECCSS-CCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred eeECCCCCcccccccc-CCCCcEEECC-CCCCCCcCHHHHhCCCcCcEEECCCC-ccCccCHHHHhcccCcCEEECCCCc
Confidence 4666677777776532 3799999999 66788899888999999999999999 8885567889999999999999999
Q ss_pred ccccch-hhhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCCcccccCCCCccccCCCccchHhhcCCCCCc
Q 037222 601 IQELPE-ELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYECFHEAPEDSVLFGGGEVLVQELLGLKYLE 679 (904)
Q Consensus 601 i~~Lp~-~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 679 (904)
+..+|. .++++++|++|++++| .+..+|...++++++|++|++.+|.+.... ...+..+++|+
T Consensus 85 l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---------------~~~~~~l~~L~ 148 (680)
T 1ziw_A 85 LSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGLSSTK---------------LGTQVQLENLQ 148 (680)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSS-CCCCCCSCTTTTCTTCCEEECCSSCCSCCC---------------CCSSSCCTTCC
T ss_pred cCccChhhhccCCCCCEEECCCC-ccCccChhHccccCCCCEEECCCCcccccC---------------chhhcccccCC
Confidence 999997 5899999999999999 788888656999999999999999775422 22356788888
Q ss_pred EEEEEecchhhHHHhhhcccccccceeeEecccC
Q 037222 680 VLELTLGSYQALQIFLSSNKLKSCIRSLFLQLAG 713 (904)
Q Consensus 680 ~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 713 (904)
.|+++.+...............++|+.|+++++.
T Consensus 149 ~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 149 ELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182 (680)
T ss_dssp EEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred EEEccCCcccccCHHHhhccccccccEEECCCCc
Confidence 8888766543322111111112578888887764
No 42
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.82 E-value=3.8e-19 Score=218.15 Aligned_cols=305 Identities=13% Similarity=0.124 Sum_probs=192.4
Q ss_pred EEEeeccccccccCCCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCccccc-CccccccccCcEeecccC
Q 037222 521 RLSLMQNQIKILSEVPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQL-PLGMSKLGSLELFDISRT 599 (904)
Q Consensus 521 ~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~l-p~~i~~L~~L~~L~l~~~ 599 (904)
.++.+.+.+..+|. -.++|++|+++ ++.+..+++..|.++++|++|+|++|..+. .+ |..+++|++|++|+|++|
T Consensus 8 ~~dcs~~~L~~vP~--lp~~l~~LdLs-~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~-~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 8 IAFYRFCNLTQVPQ--VLNTTERLLLS-FNYIRTVTASSFPFLEQLQLLELGSQYTPL-TIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEESCCCSSCCCS--SCTTCCEEEEE-SCCCCEECSSSCSSCCSCSEEEECTTCCCC-EECTTTTSSCTTCCEEECTTC
T ss_pred EEEccCCCCCCCCC--CCCCcCEEECC-CCcCCccChhHCcccccCeEEeCCCCCCcc-ccCHHHhcCCCCCCEEECCCC
Confidence 45556677777876 56899999999 666888877779999999999999993344 66 788999999999999999
Q ss_pred ccccc-chhhhcCCCCcEeeccccccccc-cch-hhhcCCCCCceeeecccCCcccccCCCCccccCCCccchHhhcCCC
Q 037222 600 EIQEL-PEELKLLVNLKCLNLRWTSKLIR-IPR-QLISNSSGLRVLRMFATGYECFHEAPEDSVLFGGGEVLVQELLGLK 676 (904)
Q Consensus 600 ~i~~L-p~~~~~L~~L~~L~l~~~~~l~~-lp~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 676 (904)
.+..+ |..++++++|++|++++| .+.. +|. ..++++++|++|++++|.+.... ....++.++
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~--------------~~~~~~~L~ 148 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY--------------LHPSFGKLN 148 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESCCCCCCC--------------CCGGGGTCS
T ss_pred cCcccCHhHccCCcccCEeeCcCC-CCCcccccCccccccCCCCEEECCCCcccccc--------------cchhHhhCC
Confidence 99877 788999999999999999 5654 443 34889999999999999876321 223578899
Q ss_pred CCcEEEEEecchhhH--HHhhhcccccccceeeEecccCCCcchhhhhhhcccC------ccCceeecccCCcce-----
Q 037222 677 YLEVLELTLGSYQAL--QIFLSSNKLKSCIRSLFLQLAGDTKSIIDAAAFADLN------HLNELYIYEGIELEE----- 743 (904)
Q Consensus 677 ~L~~L~l~~~~~~~~--~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~------~L~~L~l~~~~~l~~----- 743 (904)
+|+.|+++.+..... ..+.... .++|+.|.++++....... ..+..++ .|+.|++++|.....
T Consensus 149 ~L~~L~Ls~N~i~~~~~~~l~~l~--~~~L~~L~L~~n~l~~~~~--~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 224 (844)
T 3j0a_A 149 SLKSIDFSSNQIFLVCEHELEPLQ--GKTLSFFSLAANSLYSRVS--VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNF 224 (844)
T ss_dssp SCCEEEEESSCCCCCCSGGGHHHH--HCSSCCCEECCSBSCCCCC--CCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGG
T ss_pred CCCEEECCCCcCCeeCHHHccccc--CCccceEECCCCccccccc--cchhhcCCccccCceeEEecCCCcCchhHHHHH
Confidence 999999987654321 1111000 1466666666654322111 1122222 256666655521100
Q ss_pred ----------------------------------------------eeeccccccc-cccCCcccCCccEEeEeccCCCC
Q 037222 744 ----------------------------------------------LKIDYTEIVR-KRREPFVFRSLHRVTIFSCGKLK 776 (904)
Q Consensus 744 ----------------------------------------------l~~~~~~~~~-~~~~~~~l~~L~~L~L~~c~~l~ 776 (904)
+......... .+.....+++|+.|+|++|. +.
T Consensus 225 ~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~ 303 (844)
T 3j0a_A 225 SNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK-IN 303 (844)
T ss_dssp GGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCC-CC
T ss_pred HhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCc-CC
Confidence 0000000000 00111245566666666653 33
Q ss_pred cC-c-ccccCCCccEEeEecCccchhhcccCcccCCccccCCCCCCCcccEeecccccccccccCC-CCCCCCcceEeec
Q 037222 777 DV-T-FLVFAPNLKSLELLQCDAMEEIISVGEIAETPEMMGHISPFENLQSLHLSYLPILRSIYWK-PLPFTHLKKMEVR 853 (904)
Q Consensus 777 ~l-~-~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i~~~-~~~~~~L~~L~i~ 853 (904)
.+ + .+..+++|++|+|++|. ++.+.. ..+..+++|+.|+++++. +..++.. ...+++|+.|+++
T Consensus 304 ~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-----------~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls 370 (844)
T 3j0a_A 304 KIADEAFYGLDNLQVLNLSYNL-LGELYS-----------SNFYGLPKVAYIDLQKNH-IAIIQDQTFKFLEKLQTLDLR 370 (844)
T ss_dssp EECTTTTTTCSSCCEEEEESCC-CSCCCS-----------CSCSSCTTCCEEECCSCC-CCCCCSSCSCSCCCCCEEEEE
T ss_pred CCChHHhcCCCCCCEEECCCCC-CCccCH-----------HHhcCCCCCCEEECCCCC-CCccChhhhcCCCCCCEEECC
Confidence 22 2 25556666666666543 222211 245677788888888774 5555433 4457888888888
Q ss_pred cCCCCCCCCC
Q 037222 854 RCDQLRRLPL 863 (904)
Q Consensus 854 ~C~~L~~lp~ 863 (904)
+| +++.+|.
T Consensus 371 ~N-~l~~i~~ 379 (844)
T 3j0a_A 371 DN-ALTTIHF 379 (844)
T ss_dssp TC-CSCCCSS
T ss_pred CC-CCCcccC
Confidence 75 6666654
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.81 E-value=8.8e-20 Score=196.47 Aligned_cols=106 Identities=23% Similarity=0.314 Sum_probs=58.8
Q ss_pred CCceEEEeecCcccc---cccchhhcCCCcccEEEeec-CCCcccccCccccccccCcEeecccCccc-ccchhhhcCCC
Q 037222 539 PDLLTLFLDFNEELE---MIADGFFQFMPSLKVLKISN-CGNFTFQLPLGMSKLGSLELFDISRTEIQ-ELPEELKLLVN 613 (904)
Q Consensus 539 ~~L~~L~l~~~~~l~---~~~~~~~~~l~~Lr~L~l~~-~~~i~~~lp~~i~~L~~L~~L~l~~~~i~-~Lp~~~~~L~~ 613 (904)
.+++.|+++ .+.+. .+|.. |.++++|++|++++ + .+.+.+|..++++++|++|++++|.+. .+|..+.++++
T Consensus 50 ~~l~~L~L~-~~~l~~~~~~~~~-l~~l~~L~~L~L~~~n-~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLS-GLNLPKPYPIPSS-LANLPYLNFLYIGGIN-NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126 (313)
T ss_dssp CCEEEEEEE-CCCCSSCEECCGG-GGGCTTCSEEEEEEET-TEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred ceEEEEECC-CCCccCCcccChh-HhCCCCCCeeeCCCCC-cccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCC
Confidence 345555555 23333 24433 55566666666663 4 454455666666666666666666555 55555666666
Q ss_pred CcEeecccccccc-ccchhhhcCCCCCceeeecccCC
Q 037222 614 LKCLNLRWTSKLI-RIPRQLISNSSGLRVLRMFATGY 649 (904)
Q Consensus 614 L~~L~l~~~~~l~-~lp~~~i~~L~~L~~L~l~~~~~ 649 (904)
|++|++++| .+. .+|.. +.++++|++|++.+|.+
T Consensus 127 L~~L~Ls~N-~l~~~~p~~-~~~l~~L~~L~L~~N~l 161 (313)
T 1ogq_A 127 LVTLDFSYN-ALSGTLPPS-ISSLPNLVGITFDGNRI 161 (313)
T ss_dssp CCEEECCSS-EEESCCCGG-GGGCTTCCEEECCSSCC
T ss_pred CCEEeCCCC-ccCCcCChH-HhcCCCCCeEECcCCcc
Confidence 666666665 333 44443 55666666666665544
No 44
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.81 E-value=3.8e-19 Score=209.23 Aligned_cols=333 Identities=18% Similarity=0.147 Sum_probs=226.6
Q ss_pred ccccceeEEEeeccccccccC--CCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCc-ccccccc
Q 037222 514 RESENVTRLSLMQNQIKILSE--VPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPL-GMSKLGS 590 (904)
Q Consensus 514 ~~~~~~r~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~-~i~~L~~ 590 (904)
.....+++|++++|.+..++. +..+++|++|+++ .+.+..+++..|.++++|++|+++++ .++ .+|. .++++++
T Consensus 49 ~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~-~l~~~~~~~l~~ 125 (570)
T 2z63_A 49 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT-GNPIQSLALGAFSGLSSLQKLVAVET-NLA-SLENFPIGHLKT 125 (570)
T ss_dssp TTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECT-TCCCCEECTTTTTTCTTCCEEECTTS-CCC-CSTTCSCTTCTT
T ss_pred hCCCCceEEECCCCcCCccCcccccCchhCCEEeCc-CCcCCccCHhhhcCcccccccccccc-ccc-cCCCcccccccc
Confidence 345688999999988877654 5788999999999 55677888777889999999999999 888 6665 6889999
Q ss_pred CcEeecccCcccc--cchhhhcCCCCcEeeccccccccccchhhhcCCCCC----ceeeecccCCcccccCC--------
Q 037222 591 LELFDISRTEIQE--LPEELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGL----RVLRMFATGYECFHEAP-------- 656 (904)
Q Consensus 591 L~~L~l~~~~i~~--Lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L----~~L~l~~~~~~~~~~~~-------- 656 (904)
|++|++++|.+.. +|..++++++|++|++++| .++.++...++.+++| ++|++.+|.+.......
T Consensus 126 L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~ 204 (570)
T 2z63_A 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHK 204 (570)
T ss_dssp CCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS-CCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEE
T ss_pred ccEEecCCCccceecChhhhcccCCCCEEeCcCC-ccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCccee
Confidence 9999999998875 6888999999999999888 5666654435555555 45555444332111000
Q ss_pred --------------------------------------------------------------------------------
Q 037222 657 -------------------------------------------------------------------------------- 656 (904)
Q Consensus 657 -------------------------------------------------------------------------------- 656 (904)
T Consensus 205 L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L 284 (570)
T 2z63_A 205 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV 284 (570)
T ss_dssp EEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTC
T ss_pred EecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcc
Confidence
Q ss_pred -----------------CCcc-------------cc-------------CCCccchHhhcCCCCCcEEEEEecchhhHHH
Q 037222 657 -----------------EDSV-------------LF-------------GGGEVLVQELLGLKYLEVLELTLGSYQALQI 693 (904)
Q Consensus 657 -----------------~~~~-------------~~-------------~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~ 693 (904)
.... ++ ............+++|+.|+++.+.......
T Consensus 285 ~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 364 (570)
T 2z63_A 285 SSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGC 364 (570)
T ss_dssp SEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEE
T ss_pred cEEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCcccc
Confidence 0000 00 0000000001578999999998765443211
Q ss_pred hhhcccccccceeeEecccCCCcchhhhhhhcccCccCceeecccCCcceeeeccccccccccCCcccCCccEEeEeccC
Q 037222 694 FLSSNKLKSCIRSLFLQLAGDTKSIIDAAAFADLNHLNELYIYEGIELEELKIDYTEIVRKRREPFVFRSLHRVTIFSCG 773 (904)
Q Consensus 694 l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~ 773 (904)
.......+++|+.|+++++...... ..+..+++|+.|++++|..........+ ..+++|+.|++++|.
T Consensus 365 ~~~~~~~~~~L~~L~l~~n~l~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~---------~~l~~L~~L~l~~n~ 432 (570)
T 2z63_A 365 CSQSDFGTTSLKYLDLSFNGVITMS---SNFLGLEQLEHLDFQHSNLKQMSEFSVF---------LSLRNLIYLDISHTH 432 (570)
T ss_dssp EEHHHHTCSCCCEEECCSCSEEEEE---EEEETCTTCCEEECTTSEEESCTTSCTT---------TTCTTCCEEECTTSC
T ss_pred ccccccccCccCEEECCCCcccccc---ccccccCCCCEEEccCCccccccchhhh---------hcCCCCCEEeCcCCc
Confidence 1111122468999999988543222 2377899999999998754331111122 478999999999995
Q ss_pred CCCcCc-ccccCCCccEEeEecCccch-hhcccCcccCCccccCCCCCCCcccEeecccccccccc-cCCCCCCCCcceE
Q 037222 774 KLKDVT-FLVFAPNLKSLELLQCDAME-EIISVGEIAETPEMMGHISPFENLQSLHLSYLPILRSI-YWKPLPFTHLKKM 850 (904)
Q Consensus 774 ~l~~l~-~l~~l~~L~~L~L~~c~~l~-~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i-~~~~~~~~~L~~L 850 (904)
....++ .+..+++|+.|+|++|.... .++. .+..+++|+.|+|++|. ++.+ +.....+++|+.|
T Consensus 433 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~------------~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L 499 (570)
T 2z63_A 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD------------IFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVL 499 (570)
T ss_dssp CEECCTTTTTTCTTCCEEECTTCEEGGGEECS------------CCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEE
T ss_pred ccccchhhhhcCCcCcEEECcCCcCccccchh------------hhhcccCCCEEECCCCc-cccCChhhhhcccCCCEE
Confidence 444344 47889999999999986432 2322 57789999999999986 6655 5556679999999
Q ss_pred eeccCCCCCCCCCCCCccCCCceEEE
Q 037222 851 EVRRCDQLRRLPLDSNSATERNVVIR 876 (904)
Q Consensus 851 ~i~~C~~L~~lp~~~~~~~~~l~~i~ 876 (904)
++++| +++.+|.........+..++
T Consensus 500 ~l~~n-~l~~~~~~~~~~l~~L~~L~ 524 (570)
T 2z63_A 500 NMASN-QLKSVPDGIFDRLTSLQKIW 524 (570)
T ss_dssp ECCSS-CCSCCCTTTTTTCTTCCEEE
T ss_pred eCCCC-cCCCCCHHHhhcccCCcEEE
Confidence 99997 88888876544445555554
No 45
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.80 E-value=5.1e-19 Score=207.03 Aligned_cols=123 Identities=20% Similarity=0.214 Sum_probs=102.5
Q ss_pred EEeeccccccccCCCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccccccccCcEeecccCcc
Q 037222 522 LSLMQNQIKILSEVPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELFDISRTEI 601 (904)
Q Consensus 522 l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~l~~~~i 601 (904)
.+...+.+..+|.. -.++|++|+++ .+.+..+++..|.++++|++|++++| .+++..|..++.+++|++|++++|.+
T Consensus 10 c~~~~~~l~~ip~~-~~~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l 86 (549)
T 2z81_A 10 CDGRSRSFTSIPSG-LTAAMKSLDLS-FNKITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNHL 86 (549)
T ss_dssp EECTTSCCSSCCSC-CCTTCCEEECC-SSCCCEECSSTTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred EECCCCcccccccc-CCCCccEEECc-CCccCccChhhhhcCCcccEEECCCC-CcCccChhhccccccCCEEECCCCcc
Confidence 34455666677653 24899999999 55688887767999999999999999 89845557899999999999999999
Q ss_pred cccchh-hhcCCCCcEeecccccccccc--chhhhcCCCCCceeeecccCC
Q 037222 602 QELPEE-LKLLVNLKCLNLRWTSKLIRI--PRQLISNSSGLRVLRMFATGY 649 (904)
Q Consensus 602 ~~Lp~~-~~~L~~L~~L~l~~~~~l~~l--p~~~i~~L~~L~~L~l~~~~~ 649 (904)
..+|.. ++++++|++|++++| .++.+ |.. ++++++|++|++.+|..
T Consensus 87 ~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~-~~~l~~L~~L~L~~n~~ 135 (549)
T 2z81_A 87 SSLSSSWFGPLSSLKYLNLMGN-PYQTLGVTSL-FPNLTNLQTLRIGNVET 135 (549)
T ss_dssp CSCCHHHHTTCTTCCEEECTTC-CCSSSCSSCS-CTTCTTCCEEEEEESSS
T ss_pred CccCHHHhccCCCCcEEECCCC-cccccchhhh-hhccCCccEEECCCCcc
Confidence 998876 899999999999999 67644 443 89999999999999873
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.80 E-value=2.4e-19 Score=193.06 Aligned_cols=248 Identities=15% Similarity=0.131 Sum_probs=177.6
Q ss_pred cceeEEEeecccccc---cc-CCCCCCCceEEEeecCcccc-cccchhhcCCCcccEEEeecCCCcccccCccccccccC
Q 037222 517 ENVTRLSLMQNQIKI---LS-EVPTCPDLLTLFLDFNEELE-MIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSL 591 (904)
Q Consensus 517 ~~~r~l~l~~~~~~~---l~-~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L 591 (904)
.++++|++.++.+.. ++ .+..+++|++|++++++.+. .+|.. |.++++|++|++++| .+++.+|..++++++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHT-NVSGAIPDFLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEE-CCEEECCGGGGGCTTC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCC-eeCCcCCHHHhCCCCC
Confidence 479999999998874 43 36889999999999534454 55555 899999999999999 8887899999999999
Q ss_pred cEeecccCccc-ccchhhhcCCCCcEeecccccccc-ccchhhhcCCC-CCceeeecccCCcccccCCCCccccCCCccc
Q 037222 592 ELFDISRTEIQ-ELPEELKLLVNLKCLNLRWTSKLI-RIPRQLISNSS-GLRVLRMFATGYECFHEAPEDSVLFGGGEVL 668 (904)
Q Consensus 592 ~~L~l~~~~i~-~Lp~~~~~L~~L~~L~l~~~~~l~-~lp~~~i~~L~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 668 (904)
++|++++|.+. .+|..+..+++|++|++++| .+. .+|.. +.+++ +|++|++.+|.+... .
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~~---------------~ 190 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGN-RISGAIPDS-YGSFSKLFTSMTISRNRLTGK---------------I 190 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSS-CCEEECCGG-GGCCCTTCCEEECCSSEEEEE---------------C
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCC-cccCcCCHH-HhhhhhcCcEEECcCCeeecc---------------C
Confidence 99999999998 78999999999999999999 565 78876 88898 999999998866421 1
Q ss_pred hHhhcCCCCCcEEEEEecchhhHHHhhhcccccccceeeEecccCCCcchhhhhhhcccCccCceeecccCCcceeeecc
Q 037222 669 VQELLGLKYLEVLELTLGSYQALQIFLSSNKLKSCIRSLFLQLAGDTKSIIDAAAFADLNHLNELYIYEGIELEELKIDY 748 (904)
Q Consensus 669 ~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~ 748 (904)
...+..++ |+.|+++ ++...... ...+..+++|+.|++++|..... +..
T Consensus 191 ~~~~~~l~-L~~L~Ls--------------------------~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~--~~~ 239 (313)
T 1ogq_A 191 PPTFANLN-LAFVDLS--------------------------RNMLEGDA--SVLFGSDKNTQKIHLAKNSLAFD--LGK 239 (313)
T ss_dssp CGGGGGCC-CSEEECC--------------------------SSEEEECC--GGGCCTTSCCSEEECCSSEECCB--GGG
T ss_pred ChHHhCCc-ccEEECc--------------------------CCcccCcC--CHHHhcCCCCCEEECCCCceeee--cCc
Confidence 22233333 5555543 32111111 13556678888888887753321 111
Q ss_pred ccccccccCCcccCCccEEeEeccCCCCcCc-ccccCCCccEEeEecCccchhhcccCcccCCccccCCCCCCCcccEee
Q 037222 749 TEIVRKRREPFVFRSLHRVTIFSCGKLKDVT-FLVFAPNLKSLELLQCDAMEEIISVGEIAETPEMMGHISPFENLQSLH 827 (904)
Q Consensus 749 ~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 827 (904)
+ ..+++|++|+|++|.....+| .+..+++|+.|+|++|.....++. ...+++|+.|+
T Consensus 240 ~---------~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~-------------~~~l~~L~~l~ 297 (313)
T 1ogq_A 240 V---------GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-------------GGNLQRFDVSA 297 (313)
T ss_dssp C---------CCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-------------STTGGGSCGGG
T ss_pred c---------cccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC-------------CccccccChHH
Confidence 1 356788888888874332444 477788888888887654434432 35677777777
Q ss_pred ccccccccc
Q 037222 828 LSYLPILRS 836 (904)
Q Consensus 828 L~~~~~L~~ 836 (904)
+.+++.+..
T Consensus 298 l~~N~~lc~ 306 (313)
T 1ogq_A 298 YANNKCLCG 306 (313)
T ss_dssp TCSSSEEES
T ss_pred hcCCCCccC
Confidence 777765544
No 47
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.79 E-value=1.6e-18 Score=206.82 Aligned_cols=144 Identities=24% Similarity=0.328 Sum_probs=122.8
Q ss_pred EcCCCcccCcccccccceeEEEeeccccccccC--CCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCccc
Q 037222 502 CAGAGLEQAPAVRESENVTRLSLMQNQIKILSE--VPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTF 579 (904)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~ 579 (904)
+.+.++..+|.. -+..+++|++++|.+..++. +..+++|++|+++ ++.+..++++.|.++++|++|+|++| .++
T Consensus 38 c~~~~l~~vP~~-lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls-~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~- 113 (635)
T 4g8a_A 38 CMELNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLS-RCEIQTIEDGAYQSLSHLSTLILTGN-PIQ- 113 (635)
T ss_dssp CTTSCCSSCCSS-SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT-TCCCCEECTTTTTTCTTCCEEECTTC-CCC-
T ss_pred CCCCCcCccCCC-CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECC-CCcCCCcChhHhcCCCCCCEEEccCC-cCC-
Confidence 445567777752 34689999999999998864 6899999999999 66799999988999999999999999 999
Q ss_pred ccCc-cccccccCcEeecccCcccccch-hhhcCCCCcEeeccccccccc--cchhhhcCCCCCceeeecccCCcc
Q 037222 580 QLPL-GMSKLGSLELFDISRTEIQELPE-ELKLLVNLKCLNLRWTSKLIR--IPRQLISNSSGLRVLRMFATGYEC 651 (904)
Q Consensus 580 ~lp~-~i~~L~~L~~L~l~~~~i~~Lp~-~~~~L~~L~~L~l~~~~~l~~--lp~~~i~~L~~L~~L~l~~~~~~~ 651 (904)
.+|. .+++|.+|++|++++|.++.+|. .+++|++|++|++++| .++. +|.. ++.+++|++|++.+|.+..
T Consensus 114 ~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~-~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 114 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY-FSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGG-GGGCTTCCEEECCSSCCCE
T ss_pred CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccC-ccccCCCchh-hccchhhhhhcccCccccc
Confidence 7775 57999999999999999999986 4899999999999999 6665 4553 8899999999999887654
No 48
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.78 E-value=9.8e-19 Score=192.10 Aligned_cols=147 Identities=22% Similarity=0.283 Sum_probs=103.7
Q ss_pred EEeeccccccccCCCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccccccccCcEeecccCcc
Q 037222 522 LSLMQNQIKILSEVPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELFDISRTEI 601 (904)
Q Consensus 522 l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~l~~~~i 601 (904)
.+..++.+..+|. .-.++|++|+++ ++.+..++...|.++++|++|++++| .++...|..++++++|++|++++|.+
T Consensus 36 c~~~~~~l~~iP~-~~~~~L~~L~l~-~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l 112 (353)
T 2z80_A 36 CKGSSGSLNSIPS-GLTEAVKSLDLS-NNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNYL 112 (353)
T ss_dssp EECCSTTCSSCCT-TCCTTCCEEECT-TSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred eeCCCCCcccccc-cccccCcEEECC-CCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCcC
Confidence 4455566666654 223578888888 55677777766888888888888888 77733456688888888888888888
Q ss_pred cccchh-hhcCCCCcEeeccccccccccch-hhhcCCCCCceeeecccC-CcccccCCCCccccCCCccchHhhcCCCCC
Q 037222 602 QELPEE-LKLLVNLKCLNLRWTSKLIRIPR-QLISNSSGLRVLRMFATG-YECFHEAPEDSVLFGGGEVLVQELLGLKYL 678 (904)
Q Consensus 602 ~~Lp~~-~~~L~~L~~L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 678 (904)
+.+|.. ++.+++|++|++++| .++.+|. ..+.++++|++|++.+|. +.. .....+..+++|
T Consensus 113 ~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~---------------~~~~~~~~l~~L 176 (353)
T 2z80_A 113 SNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTK---------------IQRKDFAGLTFL 176 (353)
T ss_dssp SSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCE---------------ECTTTTTTCCEE
T ss_pred CcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccc---------------cCHHHccCCCCC
Confidence 888776 678888888888888 6777776 447788888888888773 221 112235566666
Q ss_pred cEEEEEecc
Q 037222 679 EVLELTLGS 687 (904)
Q Consensus 679 ~~L~l~~~~ 687 (904)
+.|+++.+.
T Consensus 177 ~~L~l~~n~ 185 (353)
T 2z80_A 177 EELEIDASD 185 (353)
T ss_dssp EEEEEEETT
T ss_pred CEEECCCCC
Confidence 666666544
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.77 E-value=5.8e-18 Score=184.07 Aligned_cols=245 Identities=18% Similarity=0.191 Sum_probs=153.9
Q ss_pred CCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCc-cccccccCcEeecccCccccc-chhhhcCCCCcE
Q 037222 539 PDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPL-GMSKLGSLELFDISRTEIQEL-PEELKLLVNLKC 616 (904)
Q Consensus 539 ~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~-~i~~L~~L~~L~l~~~~i~~L-p~~~~~L~~L~~ 616 (904)
.+++.++++ ...+..+|..+ .+.|++|+++++ .++ .+|. .++++++|++|++++|.+..+ |..+..+++|++
T Consensus 31 c~l~~l~~~-~~~l~~lp~~~---~~~l~~L~L~~n-~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (330)
T 1xku_A 31 CHLRVVQCS-DLGLEKVPKDL---PPDTALLDLQNN-KIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLER 104 (330)
T ss_dssp EETTEEECT-TSCCCSCCCSC---CTTCCEEECCSS-CCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred CCCeEEEec-CCCccccCccC---CCCCeEEECCCC-cCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCE
Confidence 378999998 56688888753 368999999999 898 6554 799999999999999999888 788999999999
Q ss_pred eeccccccccccchhhhcCCCCCceeeecccCCcccccCCCCccccCCCccchHhhcCCCCCcEEEEEecchhhHHHhhh
Q 037222 617 LNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYECFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQIFLS 696 (904)
Q Consensus 617 L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~ 696 (904)
|++++| .++.+|.. +. ++|++|++.+|.+.. .....+..+++|+.|+++.+..........
T Consensus 105 L~Ls~n-~l~~l~~~-~~--~~L~~L~l~~n~l~~---------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 165 (330)
T 1xku_A 105 LYLSKN-QLKELPEK-MP--KTLQELRVHENEITK---------------VRKSVFNGLNQMIVVELGTNPLKSSGIENG 165 (330)
T ss_dssp EECCSS-CCSBCCSS-CC--TTCCEEECCSSCCCB---------------BCHHHHTTCTTCCEEECCSSCCCGGGBCTT
T ss_pred EECCCC-cCCccChh-hc--ccccEEECCCCcccc---------------cCHhHhcCCccccEEECCCCcCCccCcChh
Confidence 999999 78899976 33 799999999887653 123447778888888887654332111111
Q ss_pred cccccccceeeEecccCCCcchhhhhhhcccCccCceeecccCCcceeeeccccccccccCCcccCCccEEeEeccCCCC
Q 037222 697 SNKLKSCIRSLFLQLAGDTKSIIDAAAFADLNHLNELYIYEGIELEELKIDYTEIVRKRREPFVFRSLHRVTIFSCGKLK 776 (904)
Q Consensus 697 ~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~ 776 (904)
....+++|+.|.++++.... .. ..+ .++|++|++++|.. ..+.+..+ ..+++|+.|++++|. ++
T Consensus 166 ~~~~l~~L~~L~l~~n~l~~-l~--~~~--~~~L~~L~l~~n~l-~~~~~~~~---------~~l~~L~~L~Ls~n~-l~ 229 (330)
T 1xku_A 166 AFQGMKKLSYIRIADTNITT-IP--QGL--PPSLTELHLDGNKI-TKVDAASL---------KGLNNLAKLGLSFNS-IS 229 (330)
T ss_dssp GGGGCTTCCEEECCSSCCCS-CC--SSC--CTTCSEEECTTSCC-CEECTGGG---------TTCTTCCEEECCSSC-CC
T ss_pred hccCCCCcCEEECCCCcccc-CC--ccc--cccCCEEECCCCcC-CccCHHHh---------cCCCCCCEEECCCCc-Cc
Confidence 11223456666665553221 11 111 14566666655532 22222222 245566666666653 33
Q ss_pred cCc--ccccCCCccEEeEecCccchhhcccCcccCCccccCCCCCCCcccEeeccccccccccc
Q 037222 777 DVT--FLVFAPNLKSLELLQCDAMEEIISVGEIAETPEMMGHISPFENLQSLHLSYLPILRSIY 838 (904)
Q Consensus 777 ~l~--~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i~ 838 (904)
.++ .+..+++|+.|+|++|. ++.++. .+..+++|+.|++++++ ++.++
T Consensus 230 ~~~~~~~~~l~~L~~L~L~~N~-l~~lp~------------~l~~l~~L~~L~l~~N~-i~~~~ 279 (330)
T 1xku_A 230 AVDNGSLANTPHLRELHLNNNK-LVKVPG------------GLADHKYIQVVYLHNNN-ISAIG 279 (330)
T ss_dssp EECTTTGGGSTTCCEEECCSSC-CSSCCT------------TTTTCSSCCEEECCSSC-CCCCC
T ss_pred eeChhhccCCCCCCEEECCCCc-CccCCh------------hhccCCCcCEEECCCCc-CCccC
Confidence 322 25556666666665542 333322 24455566666666553 44443
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.77 E-value=2.4e-18 Score=189.02 Aligned_cols=193 Identities=21% Similarity=0.280 Sum_probs=150.8
Q ss_pred EEEcCCCcccCcccccccceeEEEeeccccccccC--CCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCc
Q 037222 500 LVCAGAGLEQAPAVRESENVTRLSLMQNQIKILSE--VPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNF 577 (904)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i 577 (904)
+...+..+..+|.. -...+++|++++|.+..++. +..+++|++|+++ ++.+..+++..|.++++|++|++++| .+
T Consensus 36 c~~~~~~l~~iP~~-~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l 112 (353)
T 2z80_A 36 CKGSSGSLNSIPSG-LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLT-SNGINTIEEDSFSSLGSLEHLDLSYN-YL 112 (353)
T ss_dssp EECCSTTCSSCCTT-CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT-TSCCCEECTTTTTTCTTCCEEECCSS-CC
T ss_pred eeCCCCCccccccc-ccccCcEEECCCCcCcccCHHHhccCCCCCEEECC-CCccCccCHhhcCCCCCCCEEECCCC-cC
Confidence 34445566667653 33589999999999988765 6899999999999 56788888777999999999999999 99
Q ss_pred ccccCcc-ccccccCcEeecccCcccccch--hhhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCCccccc
Q 037222 578 TFQLPLG-MSKLGSLELFDISRTEIQELPE--ELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYECFHE 654 (904)
Q Consensus 578 ~~~lp~~-i~~L~~L~~L~l~~~~i~~Lp~--~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~ 654 (904)
+ .+|.. ++.+++|++|++++|.++.+|. .+..+++|++|++++|..+..++...+.++++|++|++.+|.+...
T Consensus 113 ~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-- 189 (353)
T 2z80_A 113 S-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY-- 189 (353)
T ss_dssp S-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE--
T ss_pred C-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc--
Confidence 9 78776 8999999999999999999987 6889999999999999667888766689999999999999877532
Q ss_pred CCCCccccCCCccchHhhcCCCCCcEEEEEecchhhHHHhhhcccccccceeeEecccC
Q 037222 655 APEDSVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQIFLSSNKLKSCIRSLFLQLAG 713 (904)
Q Consensus 655 ~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 713 (904)
....+..+++|+.|+++.+....+..... ...++|+.|+++++.
T Consensus 190 -------------~~~~l~~l~~L~~L~l~~n~l~~~~~~~~--~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 190 -------------EPKSLKSIQNVSHLILHMKQHILLLEIFV--DVTSSVECLELRDTD 233 (353)
T ss_dssp -------------CTTTTTTCSEEEEEEEECSCSTTHHHHHH--HHTTTEEEEEEESCB
T ss_pred -------------CHHHHhccccCCeecCCCCccccchhhhh--hhcccccEEECCCCc
Confidence 23346777888888887666544332211 112456666666553
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.77 E-value=3.4e-18 Score=183.81 Aligned_cols=242 Identities=17% Similarity=0.157 Sum_probs=156.1
Q ss_pred EEEeeccccccccCCCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCccccc---CccccccccCcEeecc
Q 037222 521 RLSLMQNQIKILSEVPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQL---PLGMSKLGSLELFDIS 597 (904)
Q Consensus 521 ~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~l---p~~i~~L~~L~~L~l~ 597 (904)
++...++.+..+|. .-.++|+.|+++ ++.+..+|..+|.++++|++|++++| .++ .. |..+..+++|++|+++
T Consensus 11 ~l~c~~~~l~~ip~-~~~~~l~~L~L~-~n~l~~i~~~~~~~l~~L~~L~L~~n-~l~-~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 11 EIRCNSKGLTSVPT-GIPSSATRLELE-SNKLQSLPHGVFDKLTQLTKLSLSSN-GLS-FKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp EEECCSSCCSSCCS-CCCTTCCEEECC-SSCCCCCCTTTTTTCTTCSEEECCSS-CCC-EEEEEEHHHHSCSCCCEEECC
T ss_pred EEEcCCCCcccCCC-CCCCCCCEEECC-CCccCccCHhHhhccccCCEEECCCC-ccC-cccCcccccccccccCEEECC
Confidence 45555566666654 233688888888 55677888887888888899988888 776 33 5667778888888888
Q ss_pred cCcccccchhhhcCCCCcEeeccccccccccch-hhhcCCCCCceeeecccCCcccccCCCCccccCCCccchHhhcCCC
Q 037222 598 RTEIQELPEELKLLVNLKCLNLRWTSKLIRIPR-QLISNSSGLRVLRMFATGYECFHEAPEDSVLFGGGEVLVQELLGLK 676 (904)
Q Consensus 598 ~~~i~~Lp~~~~~L~~L~~L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 676 (904)
+|.+..+|..+..+++|++|++++| .+..++. ..+.++++|++|++.+|.+... ....+..++
T Consensus 87 ~n~i~~l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------~~~~~~~l~ 150 (306)
T 2z66_A 87 FNGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVA---------------FNGIFNGLS 150 (306)
T ss_dssp SCSEEEEEEEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEEC---------------STTTTTTCT
T ss_pred CCccccChhhcCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCcc---------------chhhcccCc
Confidence 8888888888888888888888888 6777764 3477888888888887765421 111234445
Q ss_pred CCcEEEEEecchhhHHHhhhcccccccceeeEecccCCCcchhhhhhhcccCccCceeecccCCcceeeecccccccccc
Q 037222 677 YLEVLELTLGSYQALQIFLSSNKLKSCIRSLFLQLAGDTKSIIDAAAFADLNHLNELYIYEGIELEELKIDYTEIVRKRR 756 (904)
Q Consensus 677 ~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~ 756 (904)
+|+.|+++ ++.... ......+..+++|++|++++|.. ..+.+.++
T Consensus 151 ~L~~L~l~--------------------------~n~l~~-~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~------- 195 (306)
T 2z66_A 151 SLEVLKMA--------------------------GNSFQE-NFLPDIFTELRNLTFLDLSQCQL-EQLSPTAF------- 195 (306)
T ss_dssp TCCEEECT--------------------------TCEEGG-GEECSCCTTCTTCCEEECTTSCC-CEECTTTT-------
T ss_pred CCCEEECC--------------------------CCcccc-ccchhHHhhCcCCCEEECCCCCc-CCcCHHHh-------
Confidence 55554443 221110 00113455677888888877743 32323333
Q ss_pred CCcccCCccEEeEeccCCCCcCc--ccccCCCccEEeEecCccchhhcccCcccCCccccCCCCCCC-cccEeeccccc
Q 037222 757 EPFVFRSLHRVTIFSCGKLKDVT--FLVFAPNLKSLELLQCDAMEEIISVGEIAETPEMMGHISPFE-NLQSLHLSYLP 832 (904)
Q Consensus 757 ~~~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~-~L~~L~L~~~~ 832 (904)
..+++|+.|++++|. +..++ .+..+++|+.|+|++|......+. .+..+| +|+.|+|++++
T Consensus 196 --~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~------------~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 196 --NSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ------------ELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp --TTCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTSCCCBCSSS------------SCCCCCTTCCEEECTTCC
T ss_pred --cCCCCCCEEECCCCc-cCccChhhccCcccCCEeECCCCCCcccCHH------------HHHhhhccCCEEEccCCC
Confidence 256778888887773 44433 366777777777777543222211 344453 67777777765
No 52
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.77 E-value=4.2e-18 Score=185.29 Aligned_cols=264 Identities=15% Similarity=0.157 Sum_probs=191.0
Q ss_pred CCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccccccccCcEeecccCccccc-chhhhcCCCCcEe
Q 037222 539 PDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELFDISRTEIQEL-PEELKLLVNLKCL 617 (904)
Q Consensus 539 ~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~l~~~~i~~L-p~~~~~L~~L~~L 617 (904)
.+++.++++ .+.+..+|..+ .++|++|+++++ .++...|..++++++|++|++++|.+..+ |..++.+++|++|
T Consensus 33 c~l~~l~~~-~~~l~~ip~~~---~~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 107 (332)
T 2ft3_A 33 CHLRVVQCS-DLGLKAVPKEI---SPDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKL 107 (332)
T ss_dssp EETTEEECC-SSCCSSCCSCC---CTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEE
T ss_pred ccCCEEECC-CCCccccCCCC---CCCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEE
Confidence 378999999 56688888764 368999999999 89833356899999999999999999987 7789999999999
Q ss_pred eccccccccccchhhhcCCCCCceeeecccCCcccccCCCCccccCCCccchHhhcCCCCCcEEEEEecchhhHHHhhhc
Q 037222 618 NLRWTSKLIRIPRQLISNSSGLRVLRMFATGYECFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQIFLSS 697 (904)
Q Consensus 618 ~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~ 697 (904)
++++| .++.+|.. +. ++|++|++.+|.+.... ...+..+++|+.|+++.+...........
T Consensus 108 ~L~~n-~l~~l~~~-~~--~~L~~L~l~~n~i~~~~---------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 168 (332)
T 2ft3_A 108 YISKN-HLVEIPPN-LP--SSLVELRIHDNRIRKVP---------------KGVFSGLRNMNCIEMGGNPLENSGFEPGA 168 (332)
T ss_dssp ECCSS-CCCSCCSS-CC--TTCCEEECCSSCCCCCC---------------SGGGSSCSSCCEEECCSCCCBGGGSCTTS
T ss_pred ECCCC-cCCccCcc-cc--ccCCEEECCCCccCccC---------------HhHhCCCccCCEEECCCCccccCCCCccc
Confidence 99999 78899986 33 89999999998776322 22367889999999987665432211222
Q ss_pred ccccccceeeEecccCCCcchhhhhhhcccCccCceeecccCCcceeeeccccccccccCCcccCCccEEeEeccCCCCc
Q 037222 698 NKLKSCIRSLFLQLAGDTKSIIDAAAFADLNHLNELYIYEGIELEELKIDYTEIVRKRREPFVFRSLHRVTIFSCGKLKD 777 (904)
Q Consensus 698 ~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~ 777 (904)
.... +|+.|+++++.-.. ++ ..+ .++|++|++++|.... +.+..+ ..+++|+.|++++| .+..
T Consensus 169 ~~~l-~L~~L~l~~n~l~~-l~--~~~--~~~L~~L~l~~n~i~~-~~~~~l---------~~l~~L~~L~L~~N-~l~~ 231 (332)
T 2ft3_A 169 FDGL-KLNYLRISEAKLTG-IP--KDL--PETLNELHLDHNKIQA-IELEDL---------LRYSKLYRLGLGHN-QIRM 231 (332)
T ss_dssp SCSC-CCSCCBCCSSBCSS-CC--SSS--CSSCSCCBCCSSCCCC-CCTTSS---------TTCTTCSCCBCCSS-CCCC
T ss_pred ccCC-ccCEEECcCCCCCc-cC--ccc--cCCCCEEECCCCcCCc-cCHHHh---------cCCCCCCEEECCCC-cCCc
Confidence 2212 78888888775332 11 122 2688899998875433 222333 36788999999988 4554
Q ss_pred Cc--ccccCCCccEEeEecCccchhhcccCcccCCccccCCCCCCCcccEeecccccccccccCCCC-------CCCCcc
Q 037222 778 VT--FLVFAPNLKSLELLQCDAMEEIISVGEIAETPEMMGHISPFENLQSLHLSYLPILRSIYWKPL-------PFTHLK 848 (904)
Q Consensus 778 l~--~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i~~~~~-------~~~~L~ 848 (904)
++ .+..+++|+.|+|++| .++.++. .+..+++|+.|++++++ ++.++.... .++.|+
T Consensus 232 ~~~~~~~~l~~L~~L~L~~N-~l~~lp~------------~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~ 297 (332)
T 2ft3_A 232 IENGSLSFLPTLRELHLDNN-KLSRVPA------------GLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYN 297 (332)
T ss_dssp CCTTGGGGCTTCCEEECCSS-CCCBCCT------------TGGGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBS
T ss_pred CChhHhhCCCCCCEEECCCC-cCeecCh------------hhhcCccCCEEECCCCC-CCccChhHcccccccccccccc
Confidence 44 4788899999999886 3445543 46678899999998875 666654321 157788
Q ss_pred eEeeccCCC
Q 037222 849 KMEVRRCDQ 857 (904)
Q Consensus 849 ~L~i~~C~~ 857 (904)
.|++.++|-
T Consensus 298 ~L~l~~N~~ 306 (332)
T 2ft3_A 298 GISLFNNPV 306 (332)
T ss_dssp EEECCSSSS
T ss_pred ceEeecCcc
Confidence 898888763
No 53
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.77 E-value=9.9e-18 Score=195.52 Aligned_cols=113 Identities=21% Similarity=0.293 Sum_probs=58.0
Q ss_pred eeEEEeeccccccccCCCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccccccccCcEeeccc
Q 037222 519 VTRLSLMQNQIKILSEVPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELFDISR 598 (904)
Q Consensus 519 ~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~l~~ 598 (904)
++.++++++.+..+|... .++|+.|+++ ++.+..+|. .+++|++|+|++| .++ .+|. .+++|++|++++
T Consensus 42 l~~L~ls~n~L~~lp~~l-~~~L~~L~L~-~N~l~~lp~----~l~~L~~L~Ls~N-~l~-~lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 42 NAVLNVGESGLTTLPDCL-PAHITTLVIP-DNNLTSLPA----LPPELRTLEVSGN-QLT-SLPV---LPPGLLELSIFS 110 (622)
T ss_dssp CCEEECCSSCCSCCCSCC-CTTCSEEEEC-SCCCSCCCC----CCTTCCEEEECSC-CCS-CCCC---CCTTCCEEEECS
T ss_pred CcEEEecCCCcCccChhh-CCCCcEEEec-CCCCCCCCC----cCCCCCEEEcCCC-cCC-cCCC---CCCCCCEEECcC
Confidence 444555555555444321 1455555555 334545544 2455555555555 555 5554 445555555555
Q ss_pred CcccccchhhhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCCc
Q 037222 599 TEIQELPEELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYE 650 (904)
Q Consensus 599 ~~i~~Lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 650 (904)
|.++.+|. .+.+|++|++++| .++.+|.. +++|++|++.+|.+.
T Consensus 111 N~l~~l~~---~l~~L~~L~L~~N-~l~~lp~~----l~~L~~L~Ls~N~l~ 154 (622)
T 3g06_A 111 NPLTHLPA---LPSGLCKLWIFGN-QLTSLPVL----PPGLQELSVSDNQLA 154 (622)
T ss_dssp CCCCCCCC---CCTTCCEEECCSS-CCSCCCCC----CTTCCEEECCSSCCS
T ss_pred CcCCCCCC---CCCCcCEEECCCC-CCCcCCCC----CCCCCEEECcCCcCC
Confidence 55555554 3455555555555 45555542 255555555555443
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.76 E-value=5.6e-18 Score=192.64 Aligned_cols=224 Identities=17% Similarity=0.139 Sum_probs=111.5
Q ss_pred CCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccccccccCcEeecccCcccccchh-hhcCCCCcEe
Q 037222 539 PDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELFDISRTEIQELPEE-LKLLVNLKCL 617 (904)
Q Consensus 539 ~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~l~~~~i~~Lp~~-~~~L~~L~~L 617 (904)
++++.|+++ ++.+..+++..|.++++|++|+|++| .++...|..+..+++|++|+|++|.+..+|.. +..+++|++|
T Consensus 75 ~~l~~L~L~-~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 152 (452)
T 3zyi_A 75 SNTRYLNLM-ENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLREL 152 (452)
T ss_dssp TTCSEEECC-SSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEE
T ss_pred CCccEEECc-CCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEE
Confidence 345555555 33344444444455555555555555 44422234444555555555555555544433 3445555555
Q ss_pred eccccccccccchhhhcCCCCCceeeecccCCcccccCCCCccccCCCccchHhhcCCCCCcEEEEEecchhhHHHhhhc
Q 037222 618 NLRWTSKLIRIPRQLISNSSGLRVLRMFATGYECFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQIFLSS 697 (904)
Q Consensus 618 ~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~ 697 (904)
++++| .++.+|...+.++++|++|++.+|.... ......+..+++|+.|+++.+....++.
T Consensus 153 ~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~--------------~i~~~~~~~l~~L~~L~L~~n~l~~~~~---- 213 (452)
T 3zyi_A 153 WLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLE--------------YISEGAFEGLFNLKYLNLGMCNIKDMPN---- 213 (452)
T ss_dssp ECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCC--------------EECTTTTTTCTTCCEEECTTSCCSSCCC----
T ss_pred ECCCC-CcceeCHhHHhcCCcccEEeCCCCCCcc--------------ccChhhccCCCCCCEEECCCCccccccc----
Confidence 55554 3444444334455555555554432210 0011123344444444444333222211
Q ss_pred ccccccceeeEecccCCCcchhhhhhhcccCccCceeecccCCcceeeeccccccccccCCcccCCccEEeEeccCCCCc
Q 037222 698 NKLKSCIRSLFLQLAGDTKSIIDAAAFADLNHLNELYIYEGIELEELKIDYTEIVRKRREPFVFRSLHRVTIFSCGKLKD 777 (904)
Q Consensus 698 ~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~ 777 (904)
...+++|+.|+|+++....... ..+..+++|+.|++++|... .+.+..+ ..+++|+.|+|++| .++.
T Consensus 214 ~~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~L~L~~n~l~-~~~~~~~---------~~l~~L~~L~L~~N-~l~~ 280 (452)
T 3zyi_A 214 LTPLVGLEELEMSGNHFPEIRP--GSFHGLSSLKKLWVMNSQVS-LIERNAF---------DGLASLVELNLAHN-NLSS 280 (452)
T ss_dssp CTTCTTCCEEECTTSCCSEECG--GGGTTCTTCCEEECTTSCCC-EECTTTT---------TTCTTCCEEECCSS-CCSC
T ss_pred ccccccccEEECcCCcCcccCc--ccccCccCCCEEEeCCCcCc-eECHHHh---------cCCCCCCEEECCCC-cCCc
Confidence 1112456666666554332222 45667778888888776433 2333333 35778888888887 4555
Q ss_pred Ccc--cccCCCccEEeEecCc
Q 037222 778 VTF--LVFAPNLKSLELLQCD 796 (904)
Q Consensus 778 l~~--l~~l~~L~~L~L~~c~ 796 (904)
++. +..+++|+.|+|++|+
T Consensus 281 ~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 281 LPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CCTTSSTTCTTCCEEECCSSC
T ss_pred cChHHhccccCCCEEEccCCC
Confidence 543 5677888888887654
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.75 E-value=7e-18 Score=191.15 Aligned_cols=221 Identities=20% Similarity=0.235 Sum_probs=117.8
Q ss_pred cceeEEEeecccccccc--CCCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCc-cccccccCcE
Q 037222 517 ENVTRLSLMQNQIKILS--EVPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPL-GMSKLGSLEL 593 (904)
Q Consensus 517 ~~~r~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~-~i~~L~~L~~ 593 (904)
..++.|.+++|.+..++ .+..+++|++|+++ ++.+..++...|.++++|++|+|++| .++ .+|. .+..+++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls-~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~-~~~~~~~~~l~~L~~ 140 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLS-RNHIRTIEIGAFNGLANLNTLELFDN-RLT-TIPNGAFVYLSKLKE 140 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECC-SSCCCEECGGGGTTCSSCCEEECCSS-CCS-SCCTTTSCSCSSCCE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECC-CCcCCccChhhccCCccCCEEECCCC-cCC-eeCHhHhhccccCce
Confidence 34555555555554432 23455555555555 33344444444555555555555555 555 3333 3455555555
Q ss_pred eecccCcccccch-hhhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCCcccccCCCCccccCCCccchHhh
Q 037222 594 FDISRTEIQELPE-ELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYECFHEAPEDSVLFGGGEVLVQEL 672 (904)
Q Consensus 594 L~l~~~~i~~Lp~-~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l 672 (904)
|++++|.+..+|. .+..+++|++|++++|..+..+|.+.+.++++|++|++.+|.+..+ ..+
T Consensus 141 L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-----------------~~~ 203 (440)
T 3zyj_A 141 LWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-----------------PNL 203 (440)
T ss_dssp EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-----------------CCC
T ss_pred eeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-----------------ccc
Confidence 5555555555443 3445555555555554445555544455555555555555443310 012
Q ss_pred cCCCCCcEEEEEecchhhHHHhhhcccccccceeeEecccCCCcchhhhhhhcccCccCceeecccCCcceeeecccccc
Q 037222 673 LGLKYLEVLELTLGSYQALQIFLSSNKLKSCIRSLFLQLAGDTKSIIDAAAFADLNHLNELYIYEGIELEELKIDYTEIV 752 (904)
Q Consensus 673 ~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~ 752 (904)
..+ ++|+.|+|+++....... ..+..+++|+.|++++|.. ..+.+..+
T Consensus 204 ~~l--------------------------~~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~L~L~~n~l-~~~~~~~~--- 251 (440)
T 3zyj_A 204 TPL--------------------------IKLDELDLSGNHLSAIRP--GSFQGLMHLQKLWMIQSQI-QVIERNAF--- 251 (440)
T ss_dssp TTC--------------------------SSCCEEECTTSCCCEECT--TTTTTCTTCCEEECTTCCC-CEECTTSS---
T ss_pred CCC--------------------------cccCEEECCCCccCccCh--hhhccCccCCEEECCCCce-eEEChhhh---
Confidence 222 355556665553322211 4566778888888877643 33333333
Q ss_pred ccccCCcccCCccEEeEeccCCCCcCcc--cccCCCccEEeEecCc
Q 037222 753 RKRREPFVFRSLHRVTIFSCGKLKDVTF--LVFAPNLKSLELLQCD 796 (904)
Q Consensus 753 ~~~~~~~~l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~c~ 796 (904)
..+++|+.|+|++| .++.++. +..+++|+.|+|++|+
T Consensus 252 ------~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 252 ------DNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp ------TTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred ------cCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence 36778888888887 4555543 6678888888887654
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.75 E-value=2.5e-17 Score=187.31 Aligned_cols=242 Identities=17% Similarity=0.171 Sum_probs=180.3
Q ss_pred ceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccccccccCcEeecccCcccccc-hhhhcCCCCcEeec
Q 037222 541 LLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELFDISRTEIQELP-EELKLLVNLKCLNL 619 (904)
Q Consensus 541 L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~l~~~~i~~Lp-~~~~~L~~L~~L~l 619 (904)
...++.. +..+..+|..+ .++|++|+|++| .++...|..++++++|++|+|++|.+..++ ..+.++++|++|+|
T Consensus 56 ~~~v~c~-~~~l~~iP~~~---~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 56 FSKVVCT-RRGLSEVPQGI---PSNTRYLNLMEN-NIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL 130 (452)
T ss_dssp SCEEECC-SSCCSSCCSCC---CTTCSEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CcEEEEC-CCCcCccCCCC---CCCccEEECcCC-cCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence 4567776 56688888763 368999999999 998455788999999999999999999876 57889999999999
Q ss_pred cccccccccchhhhcCCCCCceeeecccCCcccccCCCCccccCCCccchHhhcCCCCCcEEEEEecchhhHHHhhhccc
Q 037222 620 RWTSKLIRIPRQLISNSSGLRVLRMFATGYECFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQIFLSSNK 699 (904)
Q Consensus 620 ~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~ 699 (904)
++| .++.+|.+.+..+++|++|++.+|.+..+.. ..+..+++|+.|+++
T Consensus 131 ~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---------------~~~~~l~~L~~L~l~--------------- 179 (452)
T 3zyi_A 131 FDN-WLTVIPSGAFEYLSKLRELWLRNNPIESIPS---------------YAFNRVPSLMRLDLG--------------- 179 (452)
T ss_dssp CSS-CCSBCCTTTSSSCTTCCEEECCSCCCCEECT---------------TTTTTCTTCCEEECC---------------
T ss_pred CCC-cCCccChhhhcccCCCCEEECCCCCcceeCH---------------hHHhcCCcccEEeCC---------------
Confidence 999 7899998778999999999999987753221 124556666666554
Q ss_pred ccccceeeEecccCCCcchhhhhhhcccCccCceeecccCCcceeeeccccccccccCCcccCCccEEeEeccCCCCcC-
Q 037222 700 LKSCIRSLFLQLAGDTKSIIDAAAFADLNHLNELYIYEGIELEELKIDYTEIVRKRREPFVFRSLHRVTIFSCGKLKDV- 778 (904)
Q Consensus 700 ~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l- 778 (904)
++.....+.. ..+..+++|+.|++++|.... + +. ...+++|+.|+|++|. +..+
T Consensus 180 -----------~~~~l~~i~~-~~~~~l~~L~~L~L~~n~l~~-~-~~----------~~~l~~L~~L~Ls~N~-l~~~~ 234 (452)
T 3zyi_A 180 -----------ELKKLEYISE-GAFEGLFNLKYLNLGMCNIKD-M-PN----------LTPLVGLEELEMSGNH-FPEIR 234 (452)
T ss_dssp -----------CCTTCCEECT-TTTTTCTTCCEEECTTSCCSS-C-CC----------CTTCTTCCEEECTTSC-CSEEC
T ss_pred -----------CCCCccccCh-hhccCCCCCCEEECCCCcccc-c-cc----------ccccccccEEECcCCc-CcccC
Confidence 3222222211 356778999999999885432 2 21 2478899999999994 4444
Q ss_pred c-ccccCCCccEEeEecCccchhhcccCcccCCccccCCCCCCCcccEeecccccccccccCC-CCCCCCcceEeeccCC
Q 037222 779 T-FLVFAPNLKSLELLQCDAMEEIISVGEIAETPEMMGHISPFENLQSLHLSYLPILRSIYWK-PLPFTHLKKMEVRRCD 856 (904)
Q Consensus 779 ~-~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i~~~-~~~~~~L~~L~i~~C~ 856 (904)
+ .+..+++|+.|+|++|. +..+.. ..+..+++|+.|+|+++. ++.++.. ...+++|+.|+++++|
T Consensus 235 ~~~~~~l~~L~~L~L~~n~-l~~~~~-----------~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 235 PGSFHGLSSLKKLWVMNSQ-VSLIER-----------NAFDGLASLVELNLAHNN-LSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp GGGGTTCTTCCEEECTTSC-CCEECT-----------TTTTTCTTCCEEECCSSC-CSCCCTTSSTTCTTCCEEECCSSC
T ss_pred cccccCccCCCEEEeCCCc-CceECH-----------HHhcCCCCCCEEECCCCc-CCccChHHhccccCCCEEEccCCC
Confidence 3 48899999999999864 444322 246778999999999984 7777654 3468899999998753
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.74 E-value=3.5e-17 Score=185.37 Aligned_cols=242 Identities=18% Similarity=0.217 Sum_probs=157.2
Q ss_pred ceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccccccccCcEeecccCcccccc-hhhhcCCCCcEeec
Q 037222 541 LLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELFDISRTEIQELP-EELKLLVNLKCLNL 619 (904)
Q Consensus 541 L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~l~~~~i~~Lp-~~~~~L~~L~~L~l 619 (904)
.+.++.. +..+..+|..+. +++++|+|+++ .++...+..+.++++|++|+|++|.+..++ ..+..+++|++|+|
T Consensus 45 ~~~v~c~-~~~l~~iP~~~~---~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 45 FSKVICV-RKNLREVPDGIS---TNTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp SCEEECC-SCCCSSCCSCCC---TTCSEEECCSC-CCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred CCEEEeC-CCCcCcCCCCCC---CCCcEEEccCC-cCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence 3455555 455666666532 56777777777 666333456777777777777777776665 45667777777777
Q ss_pred cccccccccchhhhcCCCCCceeeecccCCcccccCCCCccccCCCccchHhhcCCCCCcEEEEEecchhhHHHhhhccc
Q 037222 620 RWTSKLIRIPRQLISNSSGLRVLRMFATGYECFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQIFLSSNK 699 (904)
Q Consensus 620 ~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~ 699 (904)
++| .++.+|.+.+..+++|++|++.+|.+..+.. ..+..+++|+.|++.
T Consensus 120 ~~n-~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~---------------~~~~~l~~L~~L~l~--------------- 168 (440)
T 3zyj_A 120 FDN-RLTTIPNGAFVYLSKLKELWLRNNPIESIPS---------------YAFNRIPSLRRLDLG--------------- 168 (440)
T ss_dssp CSS-CCSSCCTTTSCSCSSCCEEECCSCCCCEECT---------------TTTTTCTTCCEEECC---------------
T ss_pred CCC-cCCeeCHhHhhccccCceeeCCCCcccccCH---------------HHhhhCcccCEeCCC---------------
Confidence 777 6677776557777777777777765542111 113344444444433
Q ss_pred ccccceeeEecccCCCcchhhhhhhcccCccCceeecccCCcceeeeccccccccccCCcccCCccEEeEeccCCCCcCc
Q 037222 700 LKSCIRSLFLQLAGDTKSIIDAAAFADLNHLNELYIYEGIELEELKIDYTEIVRKRREPFVFRSLHRVTIFSCGKLKDVT 779 (904)
Q Consensus 700 ~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~ 779 (904)
++....... ...+..+++|++|++++|.... + +. ...+++|+.|+|++| .++.++
T Consensus 169 -----------~~~~l~~i~-~~~~~~l~~L~~L~L~~n~l~~-~-~~----------~~~l~~L~~L~Ls~N-~l~~~~ 223 (440)
T 3zyj_A 169 -----------ELKRLSYIS-EGAFEGLSNLRYLNLAMCNLRE-I-PN----------LTPLIKLDELDLSGN-HLSAIR 223 (440)
T ss_dssp -----------CCTTCCEEC-TTTTTTCSSCCEEECTTSCCSS-C-CC----------CTTCSSCCEEECTTS-CCCEEC
T ss_pred -----------CCCCcceeC-cchhhcccccCeecCCCCcCcc-c-cc----------cCCCcccCEEECCCC-ccCccC
Confidence 222111111 0346778899999999885432 2 21 247889999999999 455543
Q ss_pred --ccccCCCccEEeEecCccchhhcccCcccCCccccCCCCCCCcccEeecccccccccccCCC-CCCCCcceEeeccCC
Q 037222 780 --FLVFAPNLKSLELLQCDAMEEIISVGEIAETPEMMGHISPFENLQSLHLSYLPILRSIYWKP-LPFTHLKKMEVRRCD 856 (904)
Q Consensus 780 --~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i~~~~-~~~~~L~~L~i~~C~ 856 (904)
.+..+++|+.|+|++|. ++.+.. ..+..+++|+.|+|+++. ++.++... ..+++|+.|+++++|
T Consensus 224 ~~~~~~l~~L~~L~L~~n~-l~~~~~-----------~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 224 PGSFQGLMHLQKLWMIQSQ-IQVIER-----------NAFDNLQSLVEINLAHNN-LTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TTTTTTCTTCCEEECTTCC-CCEECT-----------TSSTTCTTCCEEECTTSC-CCCCCTTTTSSCTTCCEEECCSSC
T ss_pred hhhhccCccCCEEECCCCc-eeEECh-----------hhhcCCCCCCEEECCCCC-CCccChhHhccccCCCEEEcCCCC
Confidence 48889999999998854 444432 246778999999999985 77776543 468899999998754
No 58
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.73 E-value=5.4e-17 Score=183.66 Aligned_cols=210 Identities=21% Similarity=0.236 Sum_probs=130.5
Q ss_pred EEEcCCCcccCcccccccceeEEEeeccccccccCCCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCccc
Q 037222 500 LVCAGAGLEQAPAVRESENVTRLSLMQNQIKILSEVPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTF 579 (904)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~ 579 (904)
+...+..+..+|. ....++.+++++|.+..++. ..++|+.|+++ .+.+..++.. .++|++|++++| .++
T Consensus 76 L~l~~~~l~~lp~--~~~~L~~L~l~~n~l~~lp~--~~~~L~~L~l~-~n~l~~l~~~----~~~L~~L~L~~n-~l~- 144 (454)
T 1jl5_A 76 LELNNLGLSSLPE--LPPHLESLVASCNSLTELPE--LPQSLKSLLVD-NNNLKALSDL----PPLLEYLGVSNN-QLE- 144 (454)
T ss_dssp EECTTSCCSCCCS--CCTTCSEEECCSSCCSSCCC--CCTTCCEEECC-SSCCSCCCSC----CTTCCEEECCSS-CCS-
T ss_pred EEecCCccccCCC--CcCCCCEEEccCCcCCcccc--ccCCCcEEECC-CCccCcccCC----CCCCCEEECcCC-CCC-
Confidence 3334444554443 23577888888887777654 34778888887 4556555431 257888888888 777
Q ss_pred ccCccccccccCcEeecccCcccccchhhhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCCcccccCCCC-
Q 037222 580 QLPLGMSKLGSLELFDISRTEIQELPEELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYECFHEAPED- 658 (904)
Q Consensus 580 ~lp~~i~~L~~L~~L~l~~~~i~~Lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~- 658 (904)
.+| .++++++|++|++++|.++.+|..+ .+|++|++++| .++.+|. ++++++|++|++.+|.+..+......
T Consensus 145 ~lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n-~l~~l~~--~~~l~~L~~L~l~~N~l~~l~~~~~~L 217 (454)
T 1jl5_A 145 KLP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNN-QLEELPE--LQNLPFLTAIYADNNSLKKLPDLPLSL 217 (454)
T ss_dssp SCC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCSSCCSSCCCCCTTC
T ss_pred CCc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCC-cCCcCcc--ccCCCCCCEEECCCCcCCcCCCCcCcc
Confidence 677 5778888888888888777777543 47888888877 6677773 77788888888877766543211110
Q ss_pred --ccccCCCccchHhhcCCCCCcEEEEEecchhhHHHhhhcccccccceeeEecccCCCcchhhhhhhcccCccCceeec
Q 037222 659 --SVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQIFLSSNKLKSCIRSLFLQLAGDTKSIIDAAAFADLNHLNELYIY 736 (904)
Q Consensus 659 --~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~ 736 (904)
..+.......+..+..+++|+.|+++.+....++. ..++|+.|+++++.-.. +. ..+++|+.|+++
T Consensus 218 ~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~~------~~~~L~~L~l~~N~l~~-l~-----~~~~~L~~L~ls 285 (454)
T 1jl5_A 218 ESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPD------LPPSLEALNVRDNYLTD-LP-----ELPQSLTFLDVS 285 (454)
T ss_dssp CEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCS------CCTTCCEEECCSSCCSC-CC-----CCCTTCCEEECC
T ss_pred cEEECcCCcCCcccccCCCCCCCEEECCCCcCCcccc------cccccCEEECCCCcccc-cC-----cccCcCCEEECc
Confidence 11111111123346678888888887665443221 23578888887764332 11 123677777777
Q ss_pred ccC
Q 037222 737 EGI 739 (904)
Q Consensus 737 ~~~ 739 (904)
+|.
T Consensus 286 ~N~ 288 (454)
T 1jl5_A 286 ENI 288 (454)
T ss_dssp SSC
T ss_pred CCc
Confidence 664
No 59
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.73 E-value=4e-17 Score=175.39 Aligned_cols=239 Identities=23% Similarity=0.229 Sum_probs=177.3
Q ss_pred EEcCCCcccCcccccccceeEEEeeccccccccC--CCCCCCceEEEeecCcccccc---cchhhcCCCcccEEEeecCC
Q 037222 501 VCAGAGLEQAPAVRESENVTRLSLMQNQIKILSE--VPTCPDLLTLFLDFNEELEMI---ADGFFQFMPSLKVLKISNCG 575 (904)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~l~~~---~~~~~~~l~~Lr~L~l~~~~ 575 (904)
...+..+..+|.. ....+++|.+.+|.+..++. +..+++|++|+++ ++.+..+ +.. +..+++|++|++++|
T Consensus 13 ~c~~~~l~~ip~~-~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~-~~~~~~L~~L~Ls~n- 88 (306)
T 2z66_A 13 RCNSKGLTSVPTG-IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLS-SNGLSFKGCCSQS-DFGTTSLKYLDLSFN- 88 (306)
T ss_dssp ECCSSCCSSCCSC-CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC-SSCCCEEEEEEHH-HHSCSCCCEEECCSC-
T ss_pred EcCCCCcccCCCC-CCCCCCEEECCCCccCccCHhHhhccccCCEEECC-CCccCcccCcccc-cccccccCEEECCCC-
Confidence 3345556666652 33689999999999988876 5789999999999 5556544 344 667999999999999
Q ss_pred CcccccCccccccccCcEeecccCcccccch--hhhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCCcccc
Q 037222 576 NFTFQLPLGMSKLGSLELFDISRTEIQELPE--ELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYECFH 653 (904)
Q Consensus 576 ~i~~~lp~~i~~L~~L~~L~l~~~~i~~Lp~--~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~ 653 (904)
.++ .+|..+..+++|++|++++|.+..+|. .+..+++|++|++++| .+..++...+.++++|++|++.+|.+..
T Consensus 89 ~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~-- 164 (306)
T 2z66_A 89 GVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQE-- 164 (306)
T ss_dssp SEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTS-CCEECSTTTTTTCTTCCEEECTTCEEGG--
T ss_pred ccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCC-cCCccchhhcccCcCCCEEECCCCcccc--
Confidence 999 899999999999999999999998875 7899999999999999 6666665568999999999999886642
Q ss_pred cCCCCccccCCCccchHhhcCCCCCcEEEEEecchhhHHHhhhcccccccceeeEecccCCCcchhhhhhhcccCccCce
Q 037222 654 EAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQIFLSSNKLKSCIRSLFLQLAGDTKSIIDAAAFADLNHLNEL 733 (904)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L 733 (904)
......+..+++|+.|++ +++.-..... ..+..+++|+.|
T Consensus 165 ------------~~~~~~~~~l~~L~~L~L--------------------------s~n~l~~~~~--~~~~~l~~L~~L 204 (306)
T 2z66_A 165 ------------NFLPDIFTELRNLTFLDL--------------------------SQCQLEQLSP--TAFNSLSSLQVL 204 (306)
T ss_dssp ------------GEECSCCTTCTTCCEEEC--------------------------TTSCCCEECT--TTTTTCTTCCEE
T ss_pred ------------ccchhHHhhCcCCCEEEC--------------------------CCCCcCCcCH--HHhcCCCCCCEE
Confidence 011122444555555554 4432221111 356788999999
Q ss_pred eecccCCcceeeeccccccccccCCcccCCccEEeEeccCCCCcCc-ccccCC-CccEEeEecCcc
Q 037222 734 YIYEGIELEELKIDYTEIVRKRREPFVFRSLHRVTIFSCGKLKDVT-FLVFAP-NLKSLELLQCDA 797 (904)
Q Consensus 734 ~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~-~L~~L~L~~c~~ 797 (904)
++++|.... +....+ ..+++|+.|++++|......+ .+..++ +|+.|+|++|+.
T Consensus 205 ~L~~N~l~~-~~~~~~---------~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 205 NMSHNNFFS-LDTFPY---------KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp ECTTSCCSB-CCSGGG---------TTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred ECCCCccCc-cChhhc---------cCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 999986433 222222 368999999999995433333 367774 999999998754
No 60
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.73 E-value=8.7e-17 Score=191.66 Aligned_cols=131 Identities=23% Similarity=0.259 Sum_probs=106.8
Q ss_pred EcCCCcccCcc--cccccceeEEEeeccccccccC--CCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCc
Q 037222 502 CAGAGLEQAPA--VRESENVTRLSLMQNQIKILSE--VPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNF 577 (904)
Q Consensus 502 ~~~~~~~~~~~--~~~~~~~r~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i 577 (904)
..+..++.++. ......++.|++++|.+..++. +..+++|++|+++ ++.+..+|+..|.++++|++|++++| .+
T Consensus 59 Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls-~N~l~~l~~~~f~~L~~L~~L~Ls~N-~l 136 (635)
T 4g8a_A 59 LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT-GNPIQSLALGAFSGLSSLQKLVAVET-NL 136 (635)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT-TCCCCEECGGGGTTCTTCCEEECTTS-CC
T ss_pred eeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEcc-CCcCCCCCHHHhcCCCCCCEEECCCC-cC
Confidence 34444555543 3456789999999999988865 5889999999999 66799999988999999999999999 99
Q ss_pred ccccCc-cccccccCcEeecccCcccc--cchhhhcCCCCcEeeccccccccccchhhhcCC
Q 037222 578 TFQLPL-GMSKLGSLELFDISRTEIQE--LPEELKLLVNLKCLNLRWTSKLIRIPRQLISNS 636 (904)
Q Consensus 578 ~~~lp~-~i~~L~~L~~L~l~~~~i~~--Lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L 636 (904)
+ .+|. .+++|++|++|++++|.+.. +|..++.+++|++|++++| .++.++.+.+..+
T Consensus 137 ~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~l~~L 196 (635)
T 4g8a_A 137 A-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVL 196 (635)
T ss_dssp C-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHH
T ss_pred C-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc-cccccccccccch
Confidence 9 6665 58999999999999998875 5788899999999999998 6666654434433
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.73 E-value=1.3e-17 Score=179.93 Aligned_cols=249 Identities=15% Similarity=0.120 Sum_probs=153.9
Q ss_pred CCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccccccccCcEeecccCcccccchhhhcCCCCcE
Q 037222 537 TCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELFDISRTEIQELPEELKLLVNLKC 616 (904)
Q Consensus 537 ~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~l~~~~i~~Lp~~~~~L~~L~~ 616 (904)
.+++|+.|+++ ++.+..+++..|..+++|++|++++| .++ ..+. ++.+++|++|++++|.++.+| .+++|++
T Consensus 32 ~~~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~-~~~~-~~~l~~L~~L~Ls~n~l~~l~----~~~~L~~ 103 (317)
T 3o53_A 32 SAWNVKELDLS-GNPLSQISAADLAPFTKLELLNLSSN-VLY-ETLD-LESLSTLRTLDLNNNYVQELL----VGPSIET 103 (317)
T ss_dssp TGGGCSEEECT-TSCCCCCCHHHHTTCTTCCEEECTTS-CCE-EEEE-ETTCTTCCEEECCSSEEEEEE----ECTTCCE
T ss_pred cCCCCCEEECc-CCccCcCCHHHhhCCCcCCEEECCCC-cCC-cchh-hhhcCCCCEEECcCCcccccc----CCCCcCE
Confidence 34556666666 34455555444566666666666666 555 3332 555666666666666555554 2255666
Q ss_pred eeccccccccccchhhhcCCCCCceeeecccCCcccccCCCCccccCCCccchHhhcCCCCCcEEEEEecchhhHHHhhh
Q 037222 617 LNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYECFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQIFLS 696 (904)
Q Consensus 617 L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~ 696 (904)
|++++| .+..++.. .+++|++|++.+|.+.. +...
T Consensus 104 L~l~~n-~l~~~~~~---~~~~L~~L~l~~N~l~~---------------------------------------~~~~-- 138 (317)
T 3o53_A 104 LHAANN-NISRVSCS---RGQGKKNIYLANNKITM---------------------------------------LRDL-- 138 (317)
T ss_dssp EECCSS-CCSEEEEC---CCSSCEEEECCSSCCCS---------------------------------------GGGB--
T ss_pred EECCCC-ccCCcCcc---ccCCCCEEECCCCCCCC---------------------------------------ccch--
Confidence 666655 45555432 34556666665554432 1110
Q ss_pred cccccccceeeEecccCCCcchhhhhhhcccCccCceeecccCCcceeeeccccccccccCCcccCCccEEeEeccCCCC
Q 037222 697 SNKLKSCIRSLFLQLAGDTKSIIDAAAFADLNHLNELYIYEGIELEELKIDYTEIVRKRREPFVFRSLHRVTIFSCGKLK 776 (904)
Q Consensus 697 ~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~ 776 (904)
....+++|+.|+++++....... ......+++|++|++++|.... + +.. ..+++|+.|+|++| .++
T Consensus 139 ~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~~l~~L~~L~L~~N~l~~-~-~~~----------~~l~~L~~L~Ls~N-~l~ 204 (317)
T 3o53_A 139 DEGCRSRVQYLDLKLNEIDTVNF-AELAASSDTLEHLNLQYNFIYD-V-KGQ----------VVFAKLKTLDLSSN-KLA 204 (317)
T ss_dssp CTGGGSSEEEEECTTSCCCEEEG-GGGGGGTTTCCEEECTTSCCCE-E-ECC----------CCCTTCCEEECCSS-CCC
T ss_pred hhhccCCCCEEECCCCCCCcccH-HHHhhccCcCCEEECCCCcCcc-c-ccc----------cccccCCEEECCCC-cCC
Confidence 01113567777777765432221 1233568999999999986433 2 211 25899999999999 455
Q ss_pred cCc-ccccCCCccEEeEecCccchhhcccCcccCCccccCCCCCCCcccEeeccccccc-ccccCCCCCCCCcceEeecc
Q 037222 777 DVT-FLVFAPNLKSLELLQCDAMEEIISVGEIAETPEMMGHISPFENLQSLHLSYLPIL-RSIYWKPLPFTHLKKMEVRR 854 (904)
Q Consensus 777 ~l~-~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L-~~i~~~~~~~~~L~~L~i~~ 854 (904)
.++ .+..+++|+.|+|++| .++.++. .+..+++|+.|++++++-. ..++.....++.|+.|++.+
T Consensus 205 ~l~~~~~~l~~L~~L~L~~N-~l~~l~~------------~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 205 FMGPEFQSAAGVTWISLRNN-KLVLIEK------------ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp EECGGGGGGTTCSEEECTTS-CCCEECT------------TCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred cchhhhcccCcccEEECcCC-cccchhh------------HhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCC
Confidence 554 5889999999999996 4555543 4677899999999998733 23444455689999999998
Q ss_pred CCCCCCCCCCC
Q 037222 855 CDQLRRLPLDS 865 (904)
Q Consensus 855 C~~L~~lp~~~ 865 (904)
|+.++..+...
T Consensus 272 ~~~l~~~~~~~ 282 (317)
T 3o53_A 272 VKKLTGQNEEE 282 (317)
T ss_dssp HHHHHSSSSCC
T ss_pred chhccCCchhc
Confidence 88887765543
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.72 E-value=2.7e-18 Score=185.38 Aligned_cols=263 Identities=17% Similarity=0.122 Sum_probs=190.4
Q ss_pred cceeEEEeeccccccccC--CCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccccccccCcEe
Q 037222 517 ENVTRLSLMQNQIKILSE--VPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELF 594 (904)
Q Consensus 517 ~~~r~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L 594 (904)
.++++|++++|.+..++. +..+++|++|+++ ++.+..+++ |..+++|++|++++| .++ .+| .+++|++|
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls-~n~l~~~~~--~~~l~~L~~L~Ls~n-~l~-~l~----~~~~L~~L 104 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLS-SNVLYETLD--LESLSTLRTLDLNNN-YVQ-ELL----VGPSIETL 104 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECT-TSCCEEEEE--ETTCTTCCEEECCSS-EEE-EEE----ECTTCCEE
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECC-CCcCCcchh--hhhcCCCCEEECcCC-ccc-ccc----CCCCcCEE
Confidence 479999999999887653 5899999999999 566766665 899999999999999 888 655 44899999
Q ss_pred ecccCcccccchhhhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCCcccccCCCCccccCCCccchHhh-c
Q 037222 595 DISRTEIQELPEELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYECFHEAPEDSVLFGGGEVLVQEL-L 673 (904)
Q Consensus 595 ~l~~~~i~~Lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~ 673 (904)
++++|.+..+|.. .+++|++|++++| .++.++...++.+++|++|++++|.+.... ...+ .
T Consensus 105 ~l~~n~l~~~~~~--~~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---------------~~~~~~ 166 (317)
T 3o53_A 105 HAANNNISRVSCS--RGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVN---------------FAELAA 166 (317)
T ss_dssp ECCSSCCSEEEEC--CCSSCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTSCCCEEE---------------GGGGGG
T ss_pred ECCCCccCCcCcc--ccCCCCEEECCCC-CCCCccchhhhccCCCCEEECCCCCCCccc---------------HHHHhh
Confidence 9999999988754 4789999999999 788887655889999999999998775321 1112 2
Q ss_pred CCCCCcEEEEEecchhhHHHhhhcccccccceeeEecccCCCcchhhhhhhcccCccCceeecccCCcceeeeccccccc
Q 037222 674 GLKYLEVLELTLGSYQALQIFLSSNKLKSCIRSLFLQLAGDTKSIIDAAAFADLNHLNELYIYEGIELEELKIDYTEIVR 753 (904)
Q Consensus 674 ~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~ 753 (904)
.+++|+.|++ +++..... .....+++|+.|++++|... .+.+. +
T Consensus 167 ~l~~L~~L~L--------------------------~~N~l~~~----~~~~~l~~L~~L~Ls~N~l~-~l~~~-~---- 210 (317)
T 3o53_A 167 SSDTLEHLNL--------------------------QYNFIYDV----KGQVVFAKLKTLDLSSNKLA-FMGPE-F---- 210 (317)
T ss_dssp GTTTCCEEEC--------------------------TTSCCCEE----ECCCCCTTCCEEECCSSCCC-EECGG-G----
T ss_pred ccCcCCEEEC--------------------------CCCcCccc----ccccccccCCEEECCCCcCC-cchhh-h----
Confidence 4455555554 44322111 12234788999999887543 33222 2
Q ss_pred cccCCcccCCccEEeEeccCCCCcCc-ccccCCCccEEeEecCccc-hhhcccCcccCCccccCCCCCCCcccEeecccc
Q 037222 754 KRREPFVFRSLHRVTIFSCGKLKDVT-FLVFAPNLKSLELLQCDAM-EEIISVGEIAETPEMMGHISPFENLQSLHLSYL 831 (904)
Q Consensus 754 ~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l-~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 831 (904)
..+++|+.|++++| .++.+| .+..+++|+.|+|++|... ..++. .+..+++|+.|++.++
T Consensus 211 -----~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~------------~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 211 -----QSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRD------------FFSKNQRVQTVAKQTV 272 (317)
T ss_dssp -----GGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCCBHHHHHH------------HHHTCHHHHHHHHHHH
T ss_pred -----cccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCCccCcCHHH------------HHhccccceEEECCCc
Confidence 36889999999998 555555 4778899999999987655 23322 3556789999999988
Q ss_pred cccccccCCCCCCCCcceEeeccCCCCCC
Q 037222 832 PILRSIYWKPLPFTHLKKMEVRRCDQLRR 860 (904)
Q Consensus 832 ~~L~~i~~~~~~~~~L~~L~i~~C~~L~~ 860 (904)
..++.........+.+....-..|..+..
T Consensus 273 ~~l~~~~~~~~~~~~~~~~~~~cc~~l~~ 301 (317)
T 3o53_A 273 KKLTGQNEEECTVPTLGHYGAYCCEDLPA 301 (317)
T ss_dssp HHHHSSSSCCCSSTTCEEETTEEEBCCTT
T ss_pred hhccCCchhccCCCceecccceeeccCCh
Confidence 87776554444455555555556766653
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.71 E-value=9.1e-17 Score=170.64 Aligned_cols=220 Identities=17% Similarity=0.165 Sum_probs=153.1
Q ss_pred eEEEeeccccccccCCCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccccccccCcEeecccC
Q 037222 520 TRLSLMQNQIKILSEVPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELFDISRT 599 (904)
Q Consensus 520 r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~l~~~ 599 (904)
+.++...+.+..+|. .-.++|+.|+++ ++.+..++...|..+++|++|+++++ .++...|..++.+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~ip~-~~~~~l~~L~l~-~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPV-GIPAASQRIFLH-GNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSCCT-TCCTTCSEEECT-TSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccCCc-CCCCCceEEEee-CCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCC
Confidence 455566666666653 335688899998 56677888777888899999999988 887344778888899999999988
Q ss_pred c-cccc-chhhhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCCcccccCCCCccccCCCccchHhhcCCCC
Q 037222 600 E-IQEL-PEELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYECFHEAPEDSVLFGGGEVLVQELLGLKY 677 (904)
Q Consensus 600 ~-i~~L-p~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 677 (904)
. +..+ |..+..+++|++|++++| .+..++...+.++++|++|++.+|.+..... ..+..+++
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---------------~~~~~l~~ 154 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDNALQALPD---------------DTFRDLGN 154 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---------------TTTTTCTT
T ss_pred CCccccCHHHhcCCcCCCEEECCCC-cCCEECHhHhhCCcCCCEEECCCCcccccCH---------------hHhccCCC
Confidence 6 8877 667888899999999888 6777765558888899999988876653211 12445555
Q ss_pred CcEEEEEecchhhHHHhhhcccccccceeeEecccCCCcchhhhhhhcccCccCceeecccCCcceeeeccccccccccC
Q 037222 678 LEVLELTLGSYQALQIFLSSNKLKSCIRSLFLQLAGDTKSIIDAAAFADLNHLNELYIYEGIELEELKIDYTEIVRKRRE 757 (904)
Q Consensus 678 L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~ 757 (904)
|+.|+++.+. ...... ..+..+++|+.|++++|... .+.+.++
T Consensus 155 L~~L~l~~n~--------------------------l~~~~~--~~~~~l~~L~~L~l~~n~l~-~~~~~~~-------- 197 (285)
T 1ozn_A 155 LTHLFLHGNR--------------------------ISSVPE--RAFRGLHSLDRLLLHQNRVA-HVHPHAF-------- 197 (285)
T ss_dssp CCEEECCSSC--------------------------CCEECT--TTTTTCTTCCEEECCSSCCC-EECTTTT--------
T ss_pred ccEEECCCCc--------------------------ccccCH--HHhcCccccCEEECCCCccc-ccCHhHc--------
Confidence 5555554322 111110 24566788888888877533 2333333
Q ss_pred CcccCCccEEeEeccCCCCcCcc--cccCCCccEEeEecCcc
Q 037222 758 PFVFRSLHRVTIFSCGKLKDVTF--LVFAPNLKSLELLQCDA 797 (904)
Q Consensus 758 ~~~l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~c~~ 797 (904)
..+++|+.|++++| .+..++. +..+++|+.|+|++|+.
T Consensus 198 -~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 198 -RDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp -TTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred -cCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCCc
Confidence 36788888888888 4555543 77888888888887654
No 64
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.70 E-value=2e-16 Score=184.45 Aligned_cols=253 Identities=20% Similarity=0.219 Sum_probs=189.5
Q ss_pred eEEEEcCCCcccCcccccccceeEEEeeccccccccCCCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCc
Q 037222 498 HFLVCAGAGLEQAPAVRESENVTRLSLMQNQIKILSEVPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNF 577 (904)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i 577 (904)
..+...+..+..+|.... .+++.|.+.+|.+..++. .+++|++|+++ ++.+..+|. .+++|++|++++| .+
T Consensus 43 ~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls-~N~l~~lp~----~l~~L~~L~Ls~N-~l 113 (622)
T 3g06_A 43 AVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA--LPPELRTLEVS-GNQLTSLPV----LPPGLLELSIFSN-PL 113 (622)
T ss_dssp CEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC--CCTTCCEEEEC-SCCCSCCCC----CCTTCCEEEECSC-CC
T ss_pred cEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC--cCCCCCEEEcC-CCcCCcCCC----CCCCCCEEECcCC-cC
Confidence 344455666666665333 689999999999998876 68999999999 566888886 6899999999999 99
Q ss_pred ccccCccccccccCcEeecccCcccccchhhhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCCcccccCCC
Q 037222 578 TFQLPLGMSKLGSLELFDISRTEIQELPEELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYECFHEAPE 657 (904)
Q Consensus 578 ~~~lp~~i~~L~~L~~L~l~~~~i~~Lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~ 657 (904)
+ .+|. .+.+|++|++++|.++.+|.. +++|++|++++| .++.+|. .+++|+.|++.+|.+..+.
T Consensus 114 ~-~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N-~l~~l~~----~~~~L~~L~L~~N~l~~l~---- 177 (622)
T 3g06_A 114 T-HLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPA----LPSELCKLWAYNNQLTSLP---- 177 (622)
T ss_dssp C-CCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCCSCCC----
T ss_pred C-CCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCC-cCCCcCC----ccCCCCEEECCCCCCCCCc----
Confidence 9 8887 678999999999999999975 489999999999 7888885 3578999999998776311
Q ss_pred CccccCCCccchHhhcCCCCCcEEEEEecchhhHHHhhhcccccccceeeEecccCCCcchhhhhhhcccCccCceeecc
Q 037222 658 DSVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQIFLSSNKLKSCIRSLFLQLAGDTKSIIDAAAFADLNHLNELYIYE 737 (904)
Q Consensus 658 ~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 737 (904)
..+++|+.|+++.|....++. ..++|+.|.+++|.... +. ..+++|+.|++++
T Consensus 178 ---------------~~~~~L~~L~Ls~N~l~~l~~------~~~~L~~L~L~~N~l~~-l~-----~~~~~L~~L~Ls~ 230 (622)
T 3g06_A 178 ---------------MLPSGLQELSVSDNQLASLPT------LPSELYKLWAYNNRLTS-LP-----ALPSGLKELIVSG 230 (622)
T ss_dssp ---------------CCCTTCCEEECCSSCCSCCCC------CCTTCCEEECCSSCCSS-CC-----CCCTTCCEEECCS
T ss_pred ---------------ccCCCCcEEECCCCCCCCCCC------ccchhhEEECcCCcccc-cC-----CCCCCCCEEEccC
Confidence 345788888888766543322 23678888888774332 11 1247888888887
Q ss_pred cCCcceeeeccccccccccCCcccCCccEEeEeccCCCCcCcccccCCCccEEeEecCccchhhcccCcccCCccccCCC
Q 037222 738 GIELEELKIDYTEIVRKRREPFVFRSLHRVTIFSCGKLKDVTFLVFAPNLKSLELLQCDAMEEIISVGEIAETPEMMGHI 817 (904)
Q Consensus 738 ~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~ 817 (904)
|. +..+ + ..+++|+.|+|++| .++.+|. .+++|+.|+|++| .++.++. .+
T Consensus 231 N~-L~~l-p------------~~l~~L~~L~Ls~N-~L~~lp~--~~~~L~~L~Ls~N-~L~~lp~------------~l 280 (622)
T 3g06_A 231 NR-LTSL-P------------VLPSELKELMVSGN-RLTSLPM--LPSGLLSLSVYRN-QLTRLPE------------SL 280 (622)
T ss_dssp SC-CSCC-C------------CCCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSS-CCCSCCG------------GG
T ss_pred Cc-cCcC-C------------CCCCcCcEEECCCC-CCCcCCc--ccccCcEEeCCCC-CCCcCCH------------HH
Confidence 74 3322 1 25678888888888 5666666 6788888888886 4445543 45
Q ss_pred CCCCcccEeeccccc
Q 037222 818 SPFENLQSLHLSYLP 832 (904)
Q Consensus 818 ~~~~~L~~L~L~~~~ 832 (904)
..+++|+.|+|++++
T Consensus 281 ~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 281 IHLSSETTVNLEGNP 295 (622)
T ss_dssp GGSCTTCEEECCSCC
T ss_pred hhccccCEEEecCCC
Confidence 678888888888876
No 65
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.70 E-value=2.6e-16 Score=178.03 Aligned_cols=264 Identities=22% Similarity=0.201 Sum_probs=159.2
Q ss_pred cceeEEEeeccccccccCCCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccccccccCcEeec
Q 037222 517 ENVTRLSLMQNQIKILSEVPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELFDI 596 (904)
Q Consensus 517 ~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~l 596 (904)
..++.|.+.+|.+..++.+..+++|++|+++ ++.+..+|.. +.+|++|++++| .++ .+| .++.+++|++|++
T Consensus 131 ~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~-~N~l~~lp~~----~~~L~~L~L~~n-~l~-~l~-~~~~l~~L~~L~l 202 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVD-NNSLKKLPDL----PPSLEFIAAGNN-QLE-ELP-ELQNLPFLTAIYA 202 (454)
T ss_dssp TTCCEEECCSSCCSSCCCCTTCTTCCEEECC-SSCCSCCCCC----CTTCCEEECCSS-CCS-SCC-CCTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCCCcccCCCCCCCEEECC-CCcCcccCCC----cccccEEECcCC-cCC-cCc-cccCCCCCCEEEC
Confidence 3566777777766666666667777777777 4445555543 346777777777 666 566 5777777777777
Q ss_pred ccCcccccchhhhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCCcccccCCCCccccCCCccchHhhcCCC
Q 037222 597 SRTEIQELPEELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYECFHEAPEDSVLFGGGEVLVQELLGLK 676 (904)
Q Consensus 597 ~~~~i~~Lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 676 (904)
++|.+..+|... .+|++|++++| .++.+|. ++.+++|++|++.+|.+..+. ..++
T Consensus 203 ~~N~l~~l~~~~---~~L~~L~l~~n-~l~~lp~--~~~l~~L~~L~l~~N~l~~l~-------------------~~~~ 257 (454)
T 1jl5_A 203 DNNSLKKLPDLP---LSLESIVAGNN-ILEELPE--LQNLPFLTTIYADNNLLKTLP-------------------DLPP 257 (454)
T ss_dssp CSSCCSSCCCCC---TTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCSSCCSSCC-------------------SCCT
T ss_pred CCCcCCcCCCCc---CcccEEECcCC-cCCcccc--cCCCCCCCEEECCCCcCCccc-------------------cccc
Confidence 777777666533 47777777777 6667774 778888888888877665311 1236
Q ss_pred CCcEEEEEecchhhHHHhhhcccccccceeeEecccCCCcchhhhhhhcccCccCceeecccCCcceeeecccccccccc
Q 037222 677 YLEVLELTLGSYQALQIFLSSNKLKSCIRSLFLQLAGDTKSIIDAAAFADLNHLNELYIYEGIELEELKIDYTEIVRKRR 756 (904)
Q Consensus 677 ~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~ 756 (904)
+|+.|+++.+....++. ..++|+.|+++++.-.. .. . -.++|+.|++++|.... + .
T Consensus 258 ~L~~L~l~~N~l~~l~~------~~~~L~~L~ls~N~l~~-l~---~--~~~~L~~L~l~~N~l~~-i-----~------ 313 (454)
T 1jl5_A 258 SLEALNVRDNYLTDLPE------LPQSLTFLDVSENIFSG-LS---E--LPPNLYYLNASSNEIRS-L-----C------ 313 (454)
T ss_dssp TCCEEECCSSCCSCCCC------CCTTCCEEECCSSCCSE-ES---C--CCTTCCEEECCSSCCSE-E-----C------
T ss_pred ccCEEECCCCcccccCc------ccCcCCEEECcCCccCc-cc---C--cCCcCCEEECcCCcCCc-c-----c------
Confidence 78888887665443322 23688999998875332 11 1 12688899998774332 1 1
Q ss_pred CCcccCCccEEeEeccCCCCcCcccccCCCccEEeEecCccchhhcccCcccCCccccCCCCCCCcccEeeccccccccc
Q 037222 757 EPFVFRSLHRVTIFSCGKLKDVTFLVFAPNLKSLELLQCDAMEEIISVGEIAETPEMMGHISPFENLQSLHLSYLPILRS 836 (904)
Q Consensus 757 ~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~ 836 (904)
...++|+.|++++| .+..+|.. +++|+.|++++|. ++.++ . .+++|+.|+++++. +..
T Consensus 314 --~~~~~L~~L~Ls~N-~l~~lp~~--~~~L~~L~L~~N~-l~~lp-------------~--~l~~L~~L~L~~N~-l~~ 371 (454)
T 1jl5_A 314 --DLPPSLEELNVSNN-KLIELPAL--PPRLERLIASFNH-LAEVP-------------E--LPQNLKQLHVEYNP-LRE 371 (454)
T ss_dssp --CCCTTCCEEECCSS-CCSCCCCC--CTTCCEEECCSSC-CSCCC-------------C--CCTTCCEEECCSSC-CSS
T ss_pred --CCcCcCCEEECCCC-cccccccc--CCcCCEEECCCCc-ccccc-------------c--hhhhccEEECCCCC-CCc
Confidence 12358888888887 45555543 5888888888763 44432 1 46788888888875 444
Q ss_pred ---ccCCCCCC-------------CCcceEeeccCCCCCC
Q 037222 837 ---IYWKPLPF-------------THLKKMEVRRCDQLRR 860 (904)
Q Consensus 837 ---i~~~~~~~-------------~~L~~L~i~~C~~L~~ 860 (904)
+|.....+ ++|+.|+++++ .++.
T Consensus 372 l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N-~l~~ 410 (454)
T 1jl5_A 372 FPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETN-PLRE 410 (454)
T ss_dssp CCCCCTTCCEEECCC-------------------------
T ss_pred CCCChHHHHhhhhcccccccccccCcCCEEECCCC-cCCc
Confidence 44333333 78999999885 5554
No 66
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.68 E-value=2.5e-16 Score=180.01 Aligned_cols=239 Identities=15% Similarity=0.114 Sum_probs=160.8
Q ss_pred CCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccccccccCcEeecccCcccccchhhhcCCCCc
Q 037222 536 PTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELFDISRTEIQELPEELKLLVNLK 615 (904)
Q Consensus 536 ~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~l~~~~i~~Lp~~~~~L~~L~ 615 (904)
..+++|++|+++ ++.+..+++..|..+++|++|+|++| .++ ..++ ++.+++|++|++++|.+..+|. .++|+
T Consensus 31 ~~~~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~-~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~ 102 (487)
T 3oja_A 31 QSAWNVKELDLS-GNPLSQISAADLAPFTKLELLNLSSN-VLY-ETLD-LESLSTLRTLDLNNNYVQELLV----GPSIE 102 (487)
T ss_dssp TTGGGCCEEECC-SSCCCCCCGGGGTTCTTCCEEECTTS-CCE-EEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCC
T ss_pred ccCCCccEEEee-CCcCCCCCHHHHhCCCCCCEEEeeCC-CCC-CCcc-cccCCCCCEEEecCCcCCCCCC----CCCcC
Confidence 345578888888 45566676666777888888888887 776 4443 7777888888888887777663 27788
Q ss_pred EeeccccccccccchhhhcCCCCCceeeecccCCcccccCCCCccccCCCccchHhhcCCCCCcEEEEEecchhhHHHhh
Q 037222 616 CLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYECFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQIFL 695 (904)
Q Consensus 616 ~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~ 695 (904)
+|++++| .+..+|.. .+++|++|++.+|.+..... ..+..
T Consensus 103 ~L~L~~N-~l~~~~~~---~l~~L~~L~L~~N~l~~~~~---------------~~~~~--------------------- 142 (487)
T 3oja_A 103 TLHAANN-NISRVSCS---RGQGKKNIYLANNKITMLRD---------------LDEGC--------------------- 142 (487)
T ss_dssp EEECCSS-CCCCEEEC---CCSSCEEEECCSSCCCSGGG---------------BCGGG---------------------
T ss_pred EEECcCC-cCCCCCcc---ccCCCCEEECCCCCCCCCCc---------------hhhcC---------------------
Confidence 8888877 66666643 46777778777776542110 01222
Q ss_pred hcccccccceeeEecccCCCcchhhhhhh-cccCccCceeecccCCcceeeeccccccccccCCcccCCccEEeEeccCC
Q 037222 696 SSNKLKSCIRSLFLQLAGDTKSIIDAAAF-ADLNHLNELYIYEGIELEELKIDYTEIVRKRREPFVFRSLHRVTIFSCGK 774 (904)
Q Consensus 696 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~ 774 (904)
+++|+.|+|+++....... ..+ ..+++|+.|++++|.... + +.. ..+++|+.|+|++|.
T Consensus 143 -----l~~L~~L~Ls~N~l~~~~~--~~l~~~l~~L~~L~Ls~N~l~~-~-~~~----------~~l~~L~~L~Ls~N~- 202 (487)
T 3oja_A 143 -----RSRVQYLDLKLNEIDTVNF--AELAASSDTLEHLNLQYNFIYD-V-KGQ----------VVFAKLKTLDLSSNK- 202 (487)
T ss_dssp -----GSSEEEEECTTSCCCEEEG--GGGGGGTTTCCEEECTTSCCCE-E-ECC----------CCCTTCCEEECCSSC-
T ss_pred -----CCCCCEEECCCCCCCCcCh--HHHhhhCCcccEEecCCCcccc-c-ccc----------ccCCCCCEEECCCCC-
Confidence 2466677777664333222 233 368999999999986433 2 211 258999999999994
Q ss_pred CCcC-cccccCCCccEEeEecCccchhhcccCcccCCccccCCCCCCCcccEeeccccccc-ccccCCCCCCCCcceEee
Q 037222 775 LKDV-TFLVFAPNLKSLELLQCDAMEEIISVGEIAETPEMMGHISPFENLQSLHLSYLPIL-RSIYWKPLPFTHLKKMEV 852 (904)
Q Consensus 775 l~~l-~~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L-~~i~~~~~~~~~L~~L~i 852 (904)
++.+ +.+..+++|+.|+|++|. +..++. .+..+++|+.|++++++-. ..++.....++.|+.|.+
T Consensus 203 l~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~------------~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 203 LAFMGPEFQSAAGVTWISLRNNK-LVLIEK------------ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269 (487)
T ss_dssp CCEECGGGGGGTTCSEEECTTSC-CCEECT------------TCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHH
T ss_pred CCCCCHhHcCCCCccEEEecCCc-Ccccch------------hhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEec
Confidence 5555 458899999999999864 555543 4667899999999998733 134434456788888877
Q ss_pred ccC
Q 037222 853 RRC 855 (904)
Q Consensus 853 ~~C 855 (904)
..+
T Consensus 270 ~~~ 272 (487)
T 3oja_A 270 QTV 272 (487)
T ss_dssp HHH
T ss_pred ccc
Confidence 633
No 67
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.67 E-value=9.8e-17 Score=170.39 Aligned_cols=214 Identities=24% Similarity=0.345 Sum_probs=161.1
Q ss_pred EcCCCcccCcccccccceeEEEeeccccccccC--CCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCC-cc
Q 037222 502 CAGAGLEQAPAVRESENVTRLSLMQNQIKILSE--VPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGN-FT 578 (904)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~-i~ 578 (904)
..+..+..+|. .....+++|+++++.+..++. +..+++|++|+++ ++.+..+++..|.++++|++|++++| . ++
T Consensus 18 c~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~n-~~l~ 94 (285)
T 1ozn_A 18 CPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLH-SNVLARIDAAAFTGLALLEQLDLSDN-AQLR 94 (285)
T ss_dssp CCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECC-SSCCCEECTTTTTTCTTCCEEECCSC-TTCC
T ss_pred cCcCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECC-CCccceeCHhhcCCccCCCEEeCCCC-CCcc
Confidence 34455666654 235689999999999988764 6889999999999 56688887777999999999999999 6 77
Q ss_pred ccc-CccccccccCcEeecccCccccc-chhhhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCCcccccCC
Q 037222 579 FQL-PLGMSKLGSLELFDISRTEIQEL-PEELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYECFHEAP 656 (904)
Q Consensus 579 ~~l-p~~i~~L~~L~~L~l~~~~i~~L-p~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~ 656 (904)
.+ |..+..+++|++|++++|.+..+ |..+..+++|++|++++| .++.+|...++++++|++|++.+|.+.....
T Consensus 95 -~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-- 170 (285)
T 1ozn_A 95 -SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGNRISSVPE-- 170 (285)
T ss_dssp -CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCEECT--
T ss_pred -ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCCcccccCH--
Confidence 55 77899999999999999999888 556889999999999999 7888887768999999999999987753221
Q ss_pred CCccccCCCccchHhhcCCCCCcEEEEEecchhhHHHhhhcccccccceeeEecccCCCcchhhhhhhcccCccCceeec
Q 037222 657 EDSVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQIFLSSNKLKSCIRSLFLQLAGDTKSIIDAAAFADLNHLNELYIY 736 (904)
Q Consensus 657 ~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~ 736 (904)
..+..+++|+.|+++.+. ...... ..+..+++|+.|+++
T Consensus 171 -------------~~~~~l~~L~~L~l~~n~--------------------------l~~~~~--~~~~~l~~L~~L~l~ 209 (285)
T 1ozn_A 171 -------------RAFRGLHSLDRLLLHQNR--------------------------VAHVHP--HAFRDLGRLMTLYLF 209 (285)
T ss_dssp -------------TTTTTCTTCCEEECCSSC--------------------------CCEECT--TTTTTCTTCCEEECC
T ss_pred -------------HHhcCccccCEEECCCCc--------------------------ccccCH--hHccCcccccEeeCC
Confidence 124556666666655332 111111 355667888888888
Q ss_pred ccCCcceeeeccccccccccCCcccCCccEEeEeccC
Q 037222 737 EGIELEELKIDYTEIVRKRREPFVFRSLHRVTIFSCG 773 (904)
Q Consensus 737 ~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~ 773 (904)
+|.... +.+..+ ..+++|+.|++++|+
T Consensus 210 ~n~l~~-~~~~~~---------~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 210 ANNLSA-LPTEAL---------APLRALQYLRLNDNP 236 (285)
T ss_dssp SSCCSC-CCHHHH---------TTCTTCCEEECCSSC
T ss_pred CCcCCc-CCHHHc---------ccCcccCEEeccCCC
Confidence 774332 222333 267888888888875
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.66 E-value=7.3e-17 Score=184.49 Aligned_cols=236 Identities=17% Similarity=0.117 Sum_probs=170.7
Q ss_pred cceeEEEeecccccccc--CCCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccccccccCcEe
Q 037222 517 ENVTRLSLMQNQIKILS--EVPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELF 594 (904)
Q Consensus 517 ~~~r~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L 594 (904)
..++.|++++|.+..++ .+..+++|++|+++ ++.+...++ |..+++|++|+|++| .++ .+|. .++|++|
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~-~l~~----~~~L~~L 104 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLS-SNVLYETLD--LESLSTLRTLDLNNN-YVQ-ELLV----GPSIETL 104 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECT-TSCCEEEEE--CTTCTTCCEEECCSS-EEE-EEEE----CTTCCEE
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEee-CCCCCCCcc--cccCCCCCEEEecCC-cCC-CCCC----CCCcCEE
Confidence 47999999999998865 36899999999999 566766665 899999999999999 888 6653 4899999
Q ss_pred ecccCcccccchhhhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCCcccccCCCCccccCCCccchHhhc-
Q 037222 595 DISRTEIQELPEELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYECFHEAPEDSVLFGGGEVLVQELL- 673 (904)
Q Consensus 595 ~l~~~~i~~Lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~- 673 (904)
++++|.+..+|.. .+++|++|++++| .++.+++..++++++|++|++++|.+... ....+.
T Consensus 105 ~L~~N~l~~~~~~--~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---------------~~~~l~~ 166 (487)
T 3oja_A 105 HAANNNISRVSCS--RGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTV---------------NFAELAA 166 (487)
T ss_dssp ECCSSCCCCEEEC--CCSSCEEEECCSS-CCCSGGGBCGGGGSSEEEEECTTSCCCEE---------------EGGGGGG
T ss_pred ECcCCcCCCCCcc--ccCCCCEEECCCC-CCCCCCchhhcCCCCCCEEECCCCCCCCc---------------ChHHHhh
Confidence 9999999988764 5789999999999 77877655589999999999999877531 122232
Q ss_pred CCCCCcEEEEEecchhhHHHhhhcccccccceeeEecccCCCcchhhhhhhcccCccCceeecccCCcceeeeccccccc
Q 037222 674 GLKYLEVLELTLGSYQALQIFLSSNKLKSCIRSLFLQLAGDTKSIIDAAAFADLNHLNELYIYEGIELEELKIDYTEIVR 753 (904)
Q Consensus 674 ~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~ 753 (904)
.+++|+.|+++ +|..... .....+++|+.|++++|... .+.+. +
T Consensus 167 ~l~~L~~L~Ls--------------------------~N~l~~~----~~~~~l~~L~~L~Ls~N~l~-~~~~~-~---- 210 (487)
T 3oja_A 167 SSDTLEHLNLQ--------------------------YNFIYDV----KGQVVFAKLKTLDLSSNKLA-FMGPE-F---- 210 (487)
T ss_dssp GTTTCCEEECT--------------------------TSCCCEE----ECCCCCTTCCEEECCSSCCC-EECGG-G----
T ss_pred hCCcccEEecC--------------------------CCccccc----cccccCCCCCEEECCCCCCC-CCCHh-H----
Confidence 45555555554 3321111 12234788888888877533 33222 2
Q ss_pred cccCCcccCCccEEeEeccCCCCcCc-ccccCCCccEEeEecCccc-hhhcccCcccCCccccCCCCCCCcccEeecccc
Q 037222 754 KRREPFVFRSLHRVTIFSCGKLKDVT-FLVFAPNLKSLELLQCDAM-EEIISVGEIAETPEMMGHISPFENLQSLHLSYL 831 (904)
Q Consensus 754 ~~~~~~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~c~~l-~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 831 (904)
..+++|+.|+|++| .+..+| .+..+++|+.|++++|+.. ..++. .+..+++|+.|.+..+
T Consensus 211 -----~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~------------~~~~l~~L~~l~~~~~ 272 (487)
T 3oja_A 211 -----QSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRD------------FFSKNQRVQTVAKQTV 272 (487)
T ss_dssp -----GGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCBCHHHHHH------------HHTTCHHHHHHHHHHH
T ss_pred -----cCCCCccEEEecCC-cCcccchhhccCCCCCEEEcCCCCCcCcchHH------------HHHhCCCCcEEecccc
Confidence 36788999999988 455554 4778889999999887654 22222 3455777777777644
Q ss_pred cc
Q 037222 832 PI 833 (904)
Q Consensus 832 ~~ 833 (904)
..
T Consensus 273 ~~ 274 (487)
T 3oja_A 273 KK 274 (487)
T ss_dssp HH
T ss_pred cc
Confidence 33
No 69
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.65 E-value=5.1e-16 Score=160.16 Aligned_cols=94 Identities=22% Similarity=0.363 Sum_probs=64.8
Q ss_pred ccccccchhhcCCCcccEEEeecCCCcccccCc-cccccccCcEeecccCc-ccccch-hhhcCCCCcEeeccccccccc
Q 037222 551 ELEMIADGFFQFMPSLKVLKISNCGNFTFQLPL-GMSKLGSLELFDISRTE-IQELPE-ELKLLVNLKCLNLRWTSKLIR 627 (904)
Q Consensus 551 ~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~-~i~~L~~L~~L~l~~~~-i~~Lp~-~~~~L~~L~~L~l~~~~~l~~ 627 (904)
.++.+|. + ..+|++|+++++ .++ .+|. .++.+++|++|++++|. ++.+|. .+..+++|++|++++|..++.
T Consensus 22 ~l~~ip~--~--~~~l~~L~l~~n-~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~ 95 (239)
T 2xwt_C 22 DIQRIPS--L--PPSTQTLKLIET-HLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY 95 (239)
T ss_dssp SCSSCCC--C--CTTCCEEEEESC-CCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE
T ss_pred CccccCC--C--CCcccEEEEeCC-cce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE
Confidence 3556665 2 236777777777 777 5554 56777777777777775 777765 567777888888877336777
Q ss_pred cchhhhcCCCCCceeeecccCCc
Q 037222 628 IPRQLISNSSGLRVLRMFATGYE 650 (904)
Q Consensus 628 lp~~~i~~L~~L~~L~l~~~~~~ 650 (904)
+|...+.++++|++|++.+|.+.
T Consensus 96 i~~~~f~~l~~L~~L~l~~n~l~ 118 (239)
T 2xwt_C 96 IDPDALKELPLLKFLGIFNTGLK 118 (239)
T ss_dssp ECTTSEECCTTCCEEEEEEECCC
T ss_pred cCHHHhCCCCCCCEEeCCCCCCc
Confidence 77655777777777777776554
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.65 E-value=1.4e-16 Score=171.34 Aligned_cols=225 Identities=17% Similarity=0.117 Sum_probs=135.0
Q ss_pred ceEEEeecCccccc--ccchhh------cCCCcccEEEeecCCCcccccCccc--cccccCcEeecccCcccccchhhhc
Q 037222 541 LLTLFLDFNEELEM--IADGFF------QFMPSLKVLKISNCGNFTFQLPLGM--SKLGSLELFDISRTEIQELPEELKL 610 (904)
Q Consensus 541 L~~L~l~~~~~l~~--~~~~~~------~~l~~Lr~L~l~~~~~i~~~lp~~i--~~L~~L~~L~l~~~~i~~Lp~~~~~ 610 (904)
|+.|+++ .+.+.. ++..+. .++++|++|++++| .+++.+|..+ +.+++|++|++++|.+..+|..++.
T Consensus 65 L~~L~L~-~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 142 (312)
T 1wwl_A 65 IKSLSLK-RLTVRAARIPSRILFGALRVLGISGLQELTLENL-EVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAE 142 (312)
T ss_dssp HHHCCCC-EEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEE-BCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHH
T ss_pred Hhhcccc-cccccCCCcCHHHHHHHHHhcCcCCccEEEccCC-cccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHH
Confidence 6666666 333422 333311 15778888888888 7765677765 7788888888888877777777766
Q ss_pred C-----CCCcEeeccccccccccchhhhcCCCCCceeeecccCCcccccCCCCccccCCCccchHhh--cCCCCCcEEEE
Q 037222 611 L-----VNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYECFHEAPEDSVLFGGGEVLVQEL--LGLKYLEVLEL 683 (904)
Q Consensus 611 L-----~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~L~~L~~L~l 683 (904)
+ ++|++|++++| .+..+|...++++++|++|++++|.+.. ....+..+ ..+++|+.|++
T Consensus 143 l~~~~~~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-------------~~~~~~~~~~~~l~~L~~L~L 208 (312)
T 1wwl_A 143 LQQWLKPGLKVLSIAQA-HSLNFSCEQVRVFPALSTLDLSDNPELG-------------ERGLISALCPLKFPTLQVLAL 208 (312)
T ss_dssp HHTTCCTTCCEEEEESC-SCCCCCTTTCCCCSSCCEEECCSCTTCH-------------HHHHHHHSCTTSCTTCCEEEC
T ss_pred HHHhhcCCCcEEEeeCC-CCccchHHHhccCCCCCEEECCCCCcCc-------------chHHHHHHHhccCCCCCEEEC
Confidence 6 77888888877 6677765457778888888887775431 00011222 44455555554
Q ss_pred EecchhhHHHhhhcccccccceeeEecccCCCcchhhhhhhcccCccCceeecccCCcceeeeccccccccccCCcccCC
Q 037222 684 TLGSYQALQIFLSSNKLKSCIRSLFLQLAGDTKSIIDAAAFADLNHLNELYIYEGIELEELKIDYTEIVRKRREPFVFRS 763 (904)
Q Consensus 684 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~ 763 (904)
+.+....+..+. ...+..+++|+.|++++|........... ..+++
T Consensus 209 ~~N~l~~~~~~~-------------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~---------~~l~~ 254 (312)
T 1wwl_A 209 RNAGMETPSGVC-------------------------SALAAARVQLQGLDLSHNSLRDAAGAPSC---------DWPSQ 254 (312)
T ss_dssp TTSCCCCHHHHH-------------------------HHHHHTTCCCSEEECTTSCCCSSCCCSCC---------CCCTT
T ss_pred CCCcCcchHHHH-------------------------HHHHhcCCCCCEEECCCCcCCcccchhhh---------hhcCC
Confidence 433222111110 02334567788888877753331101111 24678
Q ss_pred ccEEeEeccCCCCcCcc-cccCCCccEEeEecCccchhhcccCcccCCccccCCCCCCCcccEeeccccc
Q 037222 764 LHRVTIFSCGKLKDVTF-LVFAPNLKSLELLQCDAMEEIISVGEIAETPEMMGHISPFENLQSLHLSYLP 832 (904)
Q Consensus 764 L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 832 (904)
|+.|+|++| .++.+|. +. ++|+.|+|++| .++.++ .+..+++|+.|+|++++
T Consensus 255 L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N-~l~~~p-------------~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 255 LNSLNLSFT-GLKQVPKGLP--AKLSVLDLSYN-RLDRNP-------------SPDELPQVGNLSLKGNP 307 (312)
T ss_dssp CCEEECTTS-CCSSCCSSCC--SEEEEEECCSS-CCCSCC-------------CTTTSCEEEEEECTTCT
T ss_pred CCEEECCCC-ccChhhhhcc--CCceEEECCCC-CCCCCh-------------hHhhCCCCCEEeccCCC
Confidence 888888887 4455553 33 78888888875 344432 25567888888888765
No 71
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.65 E-value=4.8e-15 Score=162.49 Aligned_cols=294 Identities=14% Similarity=0.065 Sum_probs=179.0
Q ss_pred cccccchHHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCC------CHHHHHHH
Q 037222 157 ERTVVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDL------RLEKIQDD 230 (904)
Q Consensus 157 ~~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~------~~~~~~~~ 230 (904)
+..|+||+.+++++.+++..+ +++.|+|++|+|||||++++++.. . .+|+.+.... +...++..
T Consensus 11 ~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~~~~~~ 80 (350)
T 2qen_A 11 REDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER---P-----GILIDCRELYAERGHITREELIKE 80 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS---S-----EEEEEHHHHHHTTTCBCHHHHHHH
T ss_pred hHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc---C-----cEEEEeecccccccCCCHHHHHHH
Confidence 357899999999999998764 799999999999999999999874 1 6787765432 56667777
Q ss_pred HHHHhCCC--------------C--CCCCCCCHHHHHHHHHHHHcC-CcEEEEecccccccc---------cccccCCCC
Q 037222 231 IGKKIGLS--------------D--DSWKNKSFEEKAVDILRSLGE-KRFVLLLDDLWERVD---------LTKVGVPLP 284 (904)
Q Consensus 231 i~~~l~~~--------------~--~~~~~~~~~~~~~~l~~~l~~-~r~LlVlDdv~~~~~---------~~~~~~~l~ 284 (904)
+.+.+... . ......+..+....+.+..+. ++.+|||||++.... +..+.....
T Consensus 81 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~ 160 (350)
T 2qen_A 81 LQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYD 160 (350)
T ss_dssp HHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHH
Confidence 76655420 0 000123455566666665543 499999999976332 222222111
Q ss_pred CCCCCCcEEEEEecchhhhcc-----------ccC-CceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHh
Q 037222 285 GPQNTTSKVVFATRFIDVCGS-----------MEA-DRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKEC 352 (904)
Q Consensus 285 ~~~~~gs~IivTtR~~~v~~~-----------~~~-~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c 352 (904)
...+.++|+|++....... .+. ...+++.+|+.+|+.+++.+.+....... -.+.+.+|++.|
T Consensus 161 --~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~---~~~~~~~i~~~t 235 (350)
T 2qen_A 161 --SLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDV---PENEIEEAVELL 235 (350)
T ss_dssp --HCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCC---CHHHHHHHHHHH
T ss_pred --hcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHh
Confidence 1246789999887543111 111 24789999999999999987653221111 135678999999
Q ss_pred CCchhHHHHHHHHHhcCCCHHHHHHHHHHHhhchhccCCchhhhHhhHhhcccCCCchhhhHHHhHhcCCCCCcccchHH
Q 037222 353 GGLPLALITIGRAMACKRTAEEWIHAVEVLRRSAFEFAGLGKEVYPLLKFSYDSLQNETIRSCFLYCCLYPEDYGILKWD 432 (904)
Q Consensus 353 ~GlPLai~~~~~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~ 432 (904)
||+|+++..++..+....+...+.. .+...... .....+.. +.+ + ++ ..+..+..+|. . ..+...
T Consensus 236 gG~P~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~~~~l~~---l~~-~-~~-~~~~~l~~la~-g---~~~~~~ 300 (350)
T 2qen_A 236 DGIPGWLVVFGVEYLRNGDFGRAMK---RTLEVAKG--LIMGELEE---LRR-R-SP-RYVDILRAIAL-G---YNRWSL 300 (350)
T ss_dssp TTCHHHHHHHHHHHHHHCCHHHHHH---HHHHHHHH--HHHHHHHH---HHH-H-CH-HHHHHHHHHHT-T---CCSHHH
T ss_pred CCCHHHHHHHHHHHhccccHhHHHH---HHHHHHHH--HHHHHHHH---HHh-C-Ch-hHHHHHHHHHh-C---CCCHHH
Confidence 9999999998876533223222211 11110000 00011211 112 2 55 68888888887 2 134445
Q ss_pred HHHHHHhcCCccCcchhcHHHHHHHHHHHHHHhcccccccCCeee-hhhHHHHHHH
Q 037222 433 LIDCWIGEGFLEESDRFSAENQGYYIVGTLIHACLLEGIEDDRVK-MHDVVRDMAL 487 (904)
Q Consensus 433 li~~w~a~g~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~-mHdlv~d~a~ 487 (904)
+....-+.. - . ........+++.|++.+++...+ ..|+ -|++++++.+
T Consensus 301 l~~~~~~~~-~-~----~~~~~~~~~l~~L~~~gli~~~~-~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 301 IRDYLAVKG-T-K----IPEPRLYALLENLKKMNWIVEED-NTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHHHTT-C-C----CCHHHHHHHHHHHHHTTSEEEET-TEEEESSHHHHHHHT
T ss_pred HHHHHHHHh-C-C----CCHHHHHHHHHHHHhCCCEEecC-CEEEEecHHHHHHHc
Confidence 444332211 0 0 11345677899999999998753 3454 5778887654
No 72
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.65 E-value=5.7e-16 Score=166.11 Aligned_cols=190 Identities=19% Similarity=0.249 Sum_probs=106.5
Q ss_pred CCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccccccccCcEeecccCcccccchhhhcCCCCcE
Q 037222 537 TCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELFDISRTEIQELPEELKLLVNLKC 616 (904)
Q Consensus 537 ~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~l~~~~i~~Lp~~~~~L~~L~~ 616 (904)
.+++|+.|+++ ++.+..++. +..+++|++|++++| .++ .+|. ++.+++|++|++++|.+..+| .+..+++|++
T Consensus 39 ~l~~L~~L~l~-~~~i~~l~~--~~~l~~L~~L~L~~n-~i~-~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~ 111 (308)
T 1h6u_A 39 DLDGITTLSAF-GTGVTTIEG--VQYLNNLIGLELKDN-QIT-DLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKT 111 (308)
T ss_dssp HHHTCCEEECT-TSCCCCCTT--GGGCTTCCEEECCSS-CCC-CCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCE
T ss_pred HcCCcCEEEee-CCCccCchh--hhccCCCCEEEccCC-cCC-CChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCE
Confidence 44556666666 334555542 566666666666666 666 5554 666666666666666666654 4666666666
Q ss_pred eeccccccccccchhhhcCCCCCceeeecccCCcccccCCCCccccCCCccchHhhcCCCCCcEEEEEecchhhHHHhhh
Q 037222 617 LNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYECFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQIFLS 696 (904)
Q Consensus 617 L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~ 696 (904)
|++++| .++.+|. +..+++|++|++.+|.+.. +..+..+++|+.|+++
T Consensus 112 L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~-----------------~~~l~~l~~L~~L~l~------------ 159 (308)
T 1h6u_A 112 LDLTST-QITDVTP--LAGLSNLQVLYLDLNQITN-----------------ISPLAGLTNLQYLSIG------------ 159 (308)
T ss_dssp EECTTS-CCCCCGG--GTTCTTCCEEECCSSCCCC-----------------CGGGGGCTTCCEEECC------------
T ss_pred EECCCC-CCCCchh--hcCCCCCCEEECCCCccCc-----------------CccccCCCCccEEEcc------------
Confidence 666666 5566654 6666666666666654431 1113334444443332
Q ss_pred cccccccceeeEecccCCCcchhhhhhhcccCccCceeecccCCcceeeeccccccccccCCcccCCccEEeEeccCCCC
Q 037222 697 SNKLKSCIRSLFLQLAGDTKSIIDAAAFADLNHLNELYIYEGIELEELKIDYTEIVRKRREPFVFRSLHRVTIFSCGKLK 776 (904)
Q Consensus 697 ~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~ 776 (904)
+|.-. .. ..+..+++|+.|++++|.... +.+ + ..+++|+.|++++| .+.
T Consensus 160 --------------~n~l~-~~---~~l~~l~~L~~L~l~~n~l~~-~~~--l---------~~l~~L~~L~L~~N-~l~ 208 (308)
T 1h6u_A 160 --------------NAQVS-DL---TPLANLSKLTTLKADDNKISD-ISP--L---------ASLPNLIEVHLKNN-QIS 208 (308)
T ss_dssp --------------SSCCC-CC---GGGTTCTTCCEEECCSSCCCC-CGG--G---------GGCTTCCEEECTTS-CCC
T ss_pred --------------CCcCC-CC---hhhcCCCCCCEEECCCCccCc-Chh--h---------cCCCCCCEEEccCC-ccC
Confidence 22111 11 114455666666666654322 111 1 25667777777777 455
Q ss_pred cCcccccCCCccEEeEecCc
Q 037222 777 DVTFLVFAPNLKSLELLQCD 796 (904)
Q Consensus 777 ~l~~l~~l~~L~~L~L~~c~ 796 (904)
.++.+..+++|+.|++++|.
T Consensus 209 ~~~~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 209 DVSPLANTSNLFIVTLTNQT 228 (308)
T ss_dssp BCGGGTTCTTCCEEEEEEEE
T ss_pred ccccccCCCCCCEEEccCCe
Confidence 55556777777777777654
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.64 E-value=8.2e-17 Score=173.25 Aligned_cols=246 Identities=16% Similarity=0.146 Sum_probs=169.5
Q ss_pred CCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcc-cccCcccc-------ccccCcEeecccCccc-ccchh
Q 037222 537 TCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFT-FQLPLGMS-------KLGSLELFDISRTEIQ-ELPEE 607 (904)
Q Consensus 537 ~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~-~~lp~~i~-------~L~~L~~L~l~~~~i~-~Lp~~ 607 (904)
..++|+.|+++ .+.+ .+|..+... |++|+++++ .++ ..+|..+. ++.+|++|++++|.+. .+|..
T Consensus 41 ~~~~L~~l~l~-~n~l-~~p~~~~~~---L~~L~L~~n-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 41 GGRSLEYLLKR-VDTE-ADLGQFTDI---IKSLSLKRL-TVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEECTTHHHH-CCTT-CCCHHHHHH---HHHCCCCEE-EEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred cCCCceeEeec-cccc-ccHHHHHHH---Hhhcccccc-cccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 34567777777 4445 677764443 888888888 774 34666665 7889999999999887 67877
Q ss_pred h--hcCCCCcEeeccccccccccchhhhcCC-----CCCceeeecccCCcccccCCCCccccCCCccchHhhcCCCCCcE
Q 037222 608 L--KLLVNLKCLNLRWTSKLIRIPRQLISNS-----SGLRVLRMFATGYECFHEAPEDSVLFGGGEVLVQELLGLKYLEV 680 (904)
Q Consensus 608 ~--~~L~~L~~L~l~~~~~l~~lp~~~i~~L-----~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~ 680 (904)
+ ..+++|++|++++| .++.+|.. ++.+ ++|++|++.+|.+.... ...+..+++|+.
T Consensus 115 ~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~l~~~~~~~L~~L~L~~N~l~~~~---------------~~~~~~l~~L~~ 177 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNV-SWATRDAW-LAELQQWLKPGLKVLSIAQAHSLNFS---------------CEQVRVFPALST 177 (312)
T ss_dssp SSSCCSCCCSEEEEESC-BCSSSSSH-HHHHHTTCCTTCCEEEEESCSCCCCC---------------TTTCCCCSSCCE
T ss_pred HHHhcCCCccEEEccCC-CCcchhHH-HHHHHHhhcCCCcEEEeeCCCCccch---------------HHHhccCCCCCE
Confidence 6 88899999999988 67777754 6666 88999999888775321 123556666666
Q ss_pred EEEEecchhhHHHhhhcccccccceeeEecccCCCcchhhhh--hhcccCccCceeecccCCcc--eeeecccccccccc
Q 037222 681 LELTLGSYQALQIFLSSNKLKSCIRSLFLQLAGDTKSIIDAA--AFADLNHLNELYIYEGIELE--ELKIDYTEIVRKRR 756 (904)
Q Consensus 681 L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~l~--~l~~~~~~~~~~~~ 756 (904)
|+++.+.... ...... .+..+++|++|++++|.... .+.....
T Consensus 178 L~Ls~N~l~~--------------------------~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~------- 224 (312)
T 1wwl_A 178 LDLSDNPELG--------------------------ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA------- 224 (312)
T ss_dssp EECCSCTTCH--------------------------HHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHH-------
T ss_pred EECCCCCcCc--------------------------chHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHH-------
Confidence 6665443211 111111 22667899999998885431 1101111
Q ss_pred CCcccCCccEEeEeccCCCCc-C--cccccCCCccEEeEecCccchhhcccCcccCCccccCCCCCCCcccEeecccccc
Q 037222 757 EPFVFRSLHRVTIFSCGKLKD-V--TFLVFAPNLKSLELLQCDAMEEIISVGEIAETPEMMGHISPFENLQSLHLSYLPI 833 (904)
Q Consensus 757 ~~~~l~~L~~L~L~~c~~l~~-l--~~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 833 (904)
..+++|+.|++++|. +.. . +.+..+++|+.|+|++|. ++.++. .+. ++|+.|+|+++.
T Consensus 225 --~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~------------~~~--~~L~~L~Ls~N~- 285 (312)
T 1wwl_A 225 --AARVQLQGLDLSHNS-LRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPK------------GLP--AKLSVLDLSYNR- 285 (312)
T ss_dssp --HTTCCCSEEECTTSC-CCSSCCCSCCCCCTTCCEEECTTSC-CSSCCS------------SCC--SEEEEEECCSSC-
T ss_pred --hcCCCCCEEECCCCc-CCcccchhhhhhcCCCCEEECCCCc-cChhhh------------hcc--CCceEEECCCCC-
Confidence 256899999999995 444 3 336678999999999964 555533 222 899999999985
Q ss_pred cccccCCCCCCCCcceEeeccCCCCC
Q 037222 834 LRSIYWKPLPFTHLKKMEVRRCDQLR 859 (904)
Q Consensus 834 L~~i~~~~~~~~~L~~L~i~~C~~L~ 859 (904)
++.++. ...+++|+.|++++. .++
T Consensus 286 l~~~p~-~~~l~~L~~L~L~~N-~l~ 309 (312)
T 1wwl_A 286 LDRNPS-PDELPQVGNLSLKGN-PFL 309 (312)
T ss_dssp CCSCCC-TTTSCEEEEEECTTC-TTT
T ss_pred CCCChh-HhhCCCCCEEeccCC-CCC
Confidence 888765 678999999999885 444
No 74
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.63 E-value=3.6e-16 Score=184.63 Aligned_cols=290 Identities=16% Similarity=0.108 Sum_probs=140.0
Q ss_pred CCCCceEEEeecCccccccc----chhhcCCCcccEEEeecCCCcccccCccccccccCcEeecccCcc----cccchhh
Q 037222 537 TCPDLLTLFLDFNEELEMIA----DGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELFDISRTEI----QELPEEL 608 (904)
Q Consensus 537 ~~~~L~~L~l~~~~~l~~~~----~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~l~~~~i----~~Lp~~~ 608 (904)
.+++|++|+++ ++.+..+. ..++.++++|++|++++| .+. .+|..+..+++|++|+++.+.. ...+..+
T Consensus 190 ~~~~L~~L~L~-~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 266 (592)
T 3ogk_B 190 HNTSLEVLNFY-MTEFAKISPKDLETIARNCRSLVSVKVGDF-EIL-ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNL 266 (592)
T ss_dssp HCCCCCEEECT-TCCCSSCCHHHHHHHHHHCTTCCEEECSSC-BGG-GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCC
T ss_pred cCCCccEEEee-ccCCCccCHHHHHHHHhhCCCCcEEeccCc-cHH-HHHHHHhhhhHHHhhcccccccccchHHHHHHh
Confidence 45555555555 22232111 122345556666666665 555 4555555555666665553211 1223344
Q ss_pred hcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCCcccccCCCCccccCCCccchHhhcCCCCCcEEEEEecch
Q 037222 609 KLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYECFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGSY 688 (904)
Q Consensus 609 ~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 688 (904)
..+++|+.|+++++ ....+|.. +..+++|++|++.+|.+.. .....-+..+++|+.|++. +..
T Consensus 267 ~~~~~L~~L~l~~~-~~~~l~~~-~~~~~~L~~L~Ls~~~l~~--------------~~~~~~~~~~~~L~~L~L~-~~~ 329 (592)
T 3ogk_B 267 VFPRKLCRLGLSYM-GPNEMPIL-FPFAAQIRKLDLLYALLET--------------EDHCTLIQKCPNLEVLETR-NVI 329 (592)
T ss_dssp CCCTTCCEEEETTC-CTTTGGGG-GGGGGGCCEEEETTCCCCH--------------HHHHHHHTTCTTCCEEEEE-GGG
T ss_pred hccccccccCcccc-chhHHHHH-HhhcCCCcEEecCCCcCCH--------------HHHHHHHHhCcCCCEEecc-Ccc
Confidence 44555555555544 33445543 6677778888877766421 1112335677778887776 221
Q ss_pred hhHHHhhhcccccccceeeEecc----------cCCCcchhhhhhhcccCccCceeecccCCcceeeeccccc-------
Q 037222 689 QALQIFLSSNKLKSCIRSLFLQL----------AGDTKSIIDAAAFADLNHLNELYIYEGIELEELKIDYTEI------- 751 (904)
Q Consensus 689 ~~~~~l~~~~~~~~~L~~L~L~~----------~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~------- 751 (904)
. ...+......+++|+.|++.+ |...+..........+++|++|+++.+ .+....+..+..
T Consensus 330 ~-~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~l~~~~~~~l~~~~~~L~~ 407 (592)
T 3ogk_B 330 G-DRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVS-DITNESLESIGTYLKNLCD 407 (592)
T ss_dssp H-HHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEES-CCCHHHHHHHHHHCCSCCE
T ss_pred C-HHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecC-CccHHHHHHHHhhCCCCcE
Confidence 1 111111112245677777774 444443333233445677777777322 222111111110
Q ss_pred ------------cc------cccCCcccCCccEEeEeccCC-CCc--Cccc-ccCCCccEEeEecCccchhhcccCcccC
Q 037222 752 ------------VR------KRREPFVFRSLHRVTIFSCGK-LKD--VTFL-VFAPNLKSLELLQCDAMEEIISVGEIAE 809 (904)
Q Consensus 752 ------------~~------~~~~~~~l~~L~~L~L~~c~~-l~~--l~~l-~~l~~L~~L~L~~c~~l~~~~~~~~~~~ 809 (904)
.. .......+++|++|+++.|.+ +.+ +..+ ..+++|+.|+|++|. +++.
T Consensus 408 L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~-------- 478 (592)
T 3ogk_B 408 FRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDE-------- 478 (592)
T ss_dssp EEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHH--------
T ss_pred EEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHH--------
Confidence 00 000011244555555544331 111 1112 225555555555443 2111
Q ss_pred CccccCCCCCCCcccEeeccccccccc--ccCCCCCCCCcceEeeccCCCCCCC
Q 037222 810 TPEMMGHISPFENLQSLHLSYLPILRS--IYWKPLPFTHLKKMEVRRCDQLRRL 861 (904)
Q Consensus 810 ~~~~~~~~~~~~~L~~L~L~~~~~L~~--i~~~~~~~~~L~~L~i~~C~~L~~l 861 (904)
+.......+++|+.|+|++|+ ++. ++.....+++|+.|++++|+ ++.-
T Consensus 479 --~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~ 528 (592)
T 3ogk_B 479 --GLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMT 528 (592)
T ss_dssp --HHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTT
T ss_pred --HHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCHH
Confidence 001123567889999999887 443 22223357899999999986 6543
No 75
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.63 E-value=1.1e-14 Score=159.94 Aligned_cols=292 Identities=14% Similarity=0.118 Sum_probs=172.0
Q ss_pred ccccchHHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCC-----CCHHHHHHHHH
Q 037222 158 RTVVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKD-----LRLEKIQDDIG 232 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-----~~~~~~~~~i~ 232 (904)
..|+||+.+++.+.+ +.. +++.|+|++|+|||||++++.+.. . . ..+|+.+... .+...++..+.
T Consensus 13 ~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~-~--~---~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINEL-N--L---PYIYLDLRKFEERNYISYKDFLLELQ 82 (357)
T ss_dssp GGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHH-T--C---CEEEEEGGGGTTCSCCCHHHHHHHHH
T ss_pred HHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhc-C--C---CEEEEEchhhccccCCCHHHHHHHHH
Confidence 578999999999999 764 699999999999999999999886 2 2 2578887642 34455555544
Q ss_pred HHhC--------------C----CCCC----C-----CCCCHHHHHHHHHHHHcCCcEEEEecccccc-----ccccccc
Q 037222 233 KKIG--------------L----SDDS----W-----KNKSFEEKAVDILRSLGEKRFVLLLDDLWER-----VDLTKVG 280 (904)
Q Consensus 233 ~~l~--------------~----~~~~----~-----~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~-----~~~~~~~ 280 (904)
+.+. . .... . ...........+.+.-+ ++++|||||++.. .++..+.
T Consensus 83 ~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~l 161 (357)
T 2fna_A 83 KEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPAL 161 (357)
T ss_dssp HHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHHH
T ss_pred HHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHHH
Confidence 4331 0 0000 0 01233444444433222 4999999999652 2232222
Q ss_pred CCCCCCCCCCcEEEEEecchhhhcc----------c-cC-CceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHH
Q 037222 281 VPLPGPQNTTSKVVFATRFIDVCGS----------M-EA-DRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIV 348 (904)
Q Consensus 281 ~~l~~~~~~gs~IivTtR~~~v~~~----------~-~~-~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i 348 (904)
..+. ....+.++|+|+|....... . +. ...+++.+|+.+|+.+++.+.+...... .... ..|
T Consensus 162 ~~~~-~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~-~~~~----~~i 235 (357)
T 2fna_A 162 AYAY-DNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADID-FKDY----EVV 235 (357)
T ss_dssp HHHH-HHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCC-CCCH----HHH
T ss_pred HHHH-HcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCC-CCcH----HHH
Confidence 2221 12246789999997643111 1 11 2578999999999999998865321111 1121 789
Q ss_pred HHHhCCchhHHHHHHHHHhcCCCHHHHHHH-HHHHhhchhccCCchhhhHhhHhhcccCCCchhhhHHHhHhcCCCCCcc
Q 037222 349 AKECGGLPLALITIGRAMACKRTAEEWIHA-VEVLRRSAFEFAGLGKEVYPLLKFSYDSLQNETIRSCFLYCCLYPEDYG 427 (904)
Q Consensus 349 ~~~c~GlPLai~~~~~~l~~~~~~~~w~~~-~~~l~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~ 427 (904)
++.|+|+|+++..++..+....+...|..- .+..... ....+...+.- -..+++ ..+..+..+|. +.
T Consensus 236 ~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~~~~-~~~l~~-~~~~~l~~la~---g~- 303 (357)
T 2fna_A 236 YEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKKL------ILKEFENFLHG-REIARK-RYLNIMRTLSK---CG- 303 (357)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH------HHHHHHHHHTT-CGGGHH-HHHHHHHHHTT---CB-
T ss_pred HHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHHH------HHHHHHHHhhc-cccccH-HHHHHHHHHHc---CC-
Confidence 999999999999998876543343333221 1110000 00111111100 015777 78888888887 21
Q ss_pred cchHHHHHHHH-hcCCccCcchhcHHHHHHHHHHHHHHhcccccccCCeee-hhhHHHHHH
Q 037222 428 ILKWDLIDCWI-GEGFLEESDRFSAENQGYYIVGTLIHACLLEGIEDDRVK-MHDVVRDMA 486 (904)
Q Consensus 428 i~~~~li~~w~-a~g~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~-mHdlv~d~a 486 (904)
+...+....- ..|. .........+++.|++.+++...+ ..|+ -|++++++.
T Consensus 304 -~~~~l~~~~~~~~g~------~~~~~~~~~~L~~L~~~gli~~~~-~~y~f~~~~~~~~l 356 (357)
T 2fna_A 304 -KWSDVKRALELEEGI------EISDSEIYNYLTQLTKHSWIIKEG-EKYCPSEPLISLAF 356 (357)
T ss_dssp -CHHHHHHHHHHHHCS------CCCHHHHHHHHHHHHHTTSEEESS-SCEEESSHHHHHHT
T ss_pred -CHHHHHHHHHHhcCC------CCCHHHHHHHHHHHHhCCCEEecC-CEEEecCHHHHHhh
Confidence 3344432210 1121 011245667899999999998764 3455 678888763
No 76
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.63 E-value=2.2e-15 Score=155.31 Aligned_cols=111 Identities=22% Similarity=0.247 Sum_probs=80.5
Q ss_pred cccccCCCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCC-cccccCc-cccccccCcEeeccc-Ccccccc
Q 037222 529 IKILSEVPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGN-FTFQLPL-GMSKLGSLELFDISR-TEIQELP 605 (904)
Q Consensus 529 ~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~-i~~~lp~-~i~~L~~L~~L~l~~-~~i~~Lp 605 (904)
+..+|. -.++|+.|+++ ++.+..++...|.++++|++|++++| . ++ .+|. .++.+++|++|++++ |.++.+|
T Consensus 23 l~~ip~--~~~~l~~L~l~-~n~l~~i~~~~~~~l~~L~~L~l~~n-~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~ 97 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLI-ETHLRTIPSHAFSNLPNISRIYVSID-VTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYID 97 (239)
T ss_dssp CSSCCC--CCTTCCEEEEE-SCCCSEECTTTTTTCTTCCEEEEECC-SSCC-EECTTTEESCTTCCEEEEEEETTCCEEC
T ss_pred ccccCC--CCCcccEEEEe-CCcceEECHHHccCCCCCcEEeCCCC-CCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcC
Confidence 444554 33477888888 55677777766778888888888888 5 76 5554 677788888888887 7777776
Q ss_pred h-hhhcCCCCcEeeccccccccccchhhhcCCCCCc---eeeeccc
Q 037222 606 E-ELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLR---VLRMFAT 647 (904)
Q Consensus 606 ~-~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~---~L~l~~~ 647 (904)
. .+..+++|++|++++| .++.+|. +..+++|+ +|++.+|
T Consensus 98 ~~~f~~l~~L~~L~l~~n-~l~~lp~--~~~l~~L~~L~~L~l~~N 140 (239)
T 2xwt_C 98 PDALKELPLLKFLGIFNT-GLKMFPD--LTKVYSTDIFFILEITDN 140 (239)
T ss_dssp TTSEECCTTCCEEEEEEE-CCCSCCC--CTTCCBCCSEEEEEEESC
T ss_pred HHHhCCCCCCCEEeCCCC-CCccccc--cccccccccccEEECCCC
Confidence 4 4677888888888877 6777775 67777777 7877766
No 77
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.63 E-value=3.5e-16 Score=170.51 Aligned_cols=209 Identities=16% Similarity=0.100 Sum_probs=114.4
Q ss_pred hhcCC--CcccEEEeecCCCcccccCccccccccCcEeecccCcccc--cchhhhcCCCCcEeecccccccc-ccchhhh
Q 037222 559 FFQFM--PSLKVLKISNCGNFTFQLPLGMSKLGSLELFDISRTEIQE--LPEELKLLVNLKCLNLRWTSKLI-RIPRQLI 633 (904)
Q Consensus 559 ~~~~l--~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~l~~~~i~~--Lp~~~~~L~~L~~L~l~~~~~l~-~lp~~~i 633 (904)
.+..+ +++++|+++++ .+. ..+..+..+++|++|++++|.+.. +|..+..+++|++|++++| .+. ..|.. +
T Consensus 63 ~~~~~~~~~l~~L~l~~n-~l~-~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~-l 138 (336)
T 2ast_B 63 VTGRLLSQGVIAFRCPRS-FMD-QPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL-RLSDPIVNT-L 138 (336)
T ss_dssp HHHHHHHTTCSEEECTTC-EEC-SCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTC-BCCHHHHHH-H
T ss_pred HHHhhhhccceEEEcCCc-ccc-ccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCc-ccCHHHHHH-H
Confidence 35555 67788888877 776 445556677888888888877653 6777777788888888877 444 34443 6
Q ss_pred cCCCCCceeeecccC-CcccccCCCCccccCCCccchHhhcCCCCCcEEEEEecchhhHHHhhhcccccccceeeEeccc
Q 037222 634 SNSSGLRVLRMFATG-YECFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQIFLSSNKLKSCIRSLFLQLA 712 (904)
Q Consensus 634 ~~L~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~ 712 (904)
+++++|++|++.+|. +. +......+..+++|+.|+++ +|
T Consensus 139 ~~~~~L~~L~L~~~~~l~--------------~~~l~~~~~~~~~L~~L~l~--------------------------~~ 178 (336)
T 2ast_B 139 AKNSNLVRLNLSGCSGFS--------------EFALQTLLSSCSRLDELNLS--------------------------WC 178 (336)
T ss_dssp TTCTTCSEEECTTCBSCC--------------HHHHHHHHHHCTTCCEEECC--------------------------CC
T ss_pred hcCCCCCEEECCCCCCCC--------------HHHHHHHHhcCCCCCEEcCC--------------------------CC
Confidence 777888888887762 32 11111223444444444443 33
Q ss_pred CCCcchhhhhhhcccC-ccCceeecccC-Ccc-eeeeccccccccccCCcccCCccEEeEeccCCCCc--CcccccCCCc
Q 037222 713 GDTKSIIDAAAFADLN-HLNELYIYEGI-ELE-ELKIDYTEIVRKRREPFVFRSLHRVTIFSCGKLKD--VTFLVFAPNL 787 (904)
Q Consensus 713 ~~~~~~~~~~~l~~~~-~L~~L~l~~~~-~l~-~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~--l~~l~~l~~L 787 (904)
...+...+...+..++ +|++|++++|. .+. .-.+... ..+++|+.|++++|..++. ++.+..+++|
T Consensus 179 ~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~---------~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L 249 (336)
T 2ast_B 179 FDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV---------RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL 249 (336)
T ss_dssp TTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHH---------HHCTTCSEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred CCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHH---------hhCCCCCEEeCCCCCcCCHHHHHHHhCCCCC
Confidence 1121111112344455 66666666553 121 0011111 2456666666666643332 3345666677
Q ss_pred cEEeEecCccchhhcccCcccCCccccCCCCCCCcccEeecccc
Q 037222 788 KSLELLQCDAMEEIISVGEIAETPEMMGHISPFENLQSLHLSYL 831 (904)
Q Consensus 788 ~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 831 (904)
++|+|++|..+..... ..+..+++|+.|+|++|
T Consensus 250 ~~L~l~~~~~~~~~~~-----------~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 250 QHLSLSRCYDIIPETL-----------LELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CEEECTTCTTCCGGGG-----------GGGGGCTTCCEEECTTS
T ss_pred CEeeCCCCCCCCHHHH-----------HHHhcCCCCCEEeccCc
Confidence 7777766653222100 12445667777777666
No 78
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.63 E-value=5.7e-17 Score=185.19 Aligned_cols=258 Identities=16% Similarity=0.115 Sum_probs=140.1
Q ss_pred ceeEEEeecccccccc--C-CCCCCCceEEEeecCccccc-----ccchhhcCCCcccEEEeecCCCcccccCcccc-cc
Q 037222 518 NVTRLSLMQNQIKILS--E-VPTCPDLLTLFLDFNEELEM-----IADGFFQFMPSLKVLKISNCGNFTFQLPLGMS-KL 588 (904)
Q Consensus 518 ~~r~l~l~~~~~~~l~--~-~~~~~~L~~L~l~~~~~l~~-----~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~-~L 588 (904)
++++|+++++.+...+ . +..+++|++|+++++ .+.. ++ ..+..+++|++|++++| .+....+..+. .+
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~-~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDIS-SALRVNPALAELNLRSN-ELGDVGVHCVLQGL 80 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHH-HHHHTCTTCCEEECTTC-CCHHHHHHHHHHTT
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCC-CCCHHHHHHHH-HHHHhCCCcCEEeCCCC-cCChHHHHHHHHHH
Confidence 5677777777665422 1 356777888888843 3432 22 23667788888888887 66632333332 34
Q ss_pred c----cCcEeecccCccc-----ccchhhhcCCCCcEeeccccccccccch-----hhhcCCCCCceeeecccCCccccc
Q 037222 589 G----SLELFDISRTEIQ-----ELPEELKLLVNLKCLNLRWTSKLIRIPR-----QLISNSSGLRVLRMFATGYECFHE 654 (904)
Q Consensus 589 ~----~L~~L~l~~~~i~-----~Lp~~~~~L~~L~~L~l~~~~~l~~lp~-----~~i~~L~~L~~L~l~~~~~~~~~~ 654 (904)
. +|++|++++|.+. .+|..+..+++|++|++++| .+..... .....+++|++|++.+|.+.....
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 159 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC 159 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCC-cCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH
Confidence 4 5888888888776 45777777888888888877 3443221 112235568888887776542110
Q ss_pred CCCCccccCCCccchHhhcCCCCCcEEEEEecchhhH--HHhhhcc-cccccceeeEecccCCCcch--hhhhhhcccCc
Q 037222 655 APEDSVLFGGGEVLVQELLGLKYLEVLELTLGSYQAL--QIFLSSN-KLKSCIRSLFLQLAGDTKSI--IDAAAFADLNH 729 (904)
Q Consensus 655 ~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~--~~l~~~~-~~~~~L~~L~L~~~~~~~~~--~~~~~l~~~~~ 729 (904)
......+..+++|+.|+++.+..... ..+.... ...++|+.|++++|...... .+...+..+++
T Consensus 160 -----------~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 228 (461)
T 1z7x_W 160 -----------EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKAS 228 (461)
T ss_dssp -----------HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTT
T ss_pred -----------HHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCC
Confidence 01233455667777777776554321 1111110 01236777777776433211 12234556677
Q ss_pred cCceeecccCCcceeeeccccccccccCCcccCCccEEeEeccCCCCc-----Cc-ccccCCCccEEeEecCc
Q 037222 730 LNELYIYEGIELEELKIDYTEIVRKRREPFVFRSLHRVTIFSCGKLKD-----VT-FLVFAPNLKSLELLQCD 796 (904)
Q Consensus 730 L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~-----l~-~l~~l~~L~~L~L~~c~ 796 (904)
|++|++++|.. .......+.. .....+++|++|++++| .++. ++ .+..+++|++|+|++|.
T Consensus 229 L~~L~Ls~n~l-~~~~~~~l~~----~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 295 (461)
T 1z7x_W 229 LRELALGSNKL-GDVGMAELCP----GLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNE 295 (461)
T ss_dssp CCEEECCSSBC-HHHHHHHHHH----HHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCC
T ss_pred ccEEeccCCcC-ChHHHHHHHH----HHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCC
Confidence 77777777642 2111110000 00013566666666666 3433 22 24456666666666653
No 79
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.61 E-value=6.6e-15 Score=165.31 Aligned_cols=305 Identities=11% Similarity=0.036 Sum_probs=183.8
Q ss_pred ccccchHHHHHHHHHHH-hc------CCceEEEE--EcCCCCcHHHHHHHHHHhcccCC---CCCC-EEEEEEecCCCCH
Q 037222 158 RTVVGLQSQLEQVWRCL-VE------ESVGIIGL--YGMGGVGKTTLLTHINNKFLESP---TNFD-CVIWVVVSKDLRL 224 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L-~~------~~~~vi~I--~G~gGiGKTtLa~~v~~~~~~~~---~~f~-~~~wv~vs~~~~~ 224 (904)
..++||+.+++++.+++ .. .....+.| +|++|+||||||+.+++.. ... ..|+ ..+|+.+....+.
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRV-SEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHH-HHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHH-HHHHhccCCceeEEEEECCCCCCH
Confidence 57899999999999988 42 24556767 9999999999999999876 211 1233 3678887777788
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHc--CCcEEEEecccccc--------cccccccCCCCC--CCC--CC
Q 037222 225 EKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSLG--EKRFVLLLDDLWER--------VDLTKVGVPLPG--PQN--TT 290 (904)
Q Consensus 225 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~~r~LlVlDdv~~~--------~~~~~~~~~l~~--~~~--~g 290 (904)
..++..++.+++..... ...+.......+...+. +++++|||||+|.- ..+..+...+.. ..+ ..
T Consensus 101 ~~~~~~l~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 179 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQV-RGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNR 179 (412)
T ss_dssp HHHHHHHHHHHTCCCCC-TTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCB
T ss_pred HHHHHHHHHHhCCCCCC-CCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCce
Confidence 99999999998764321 22345566667777664 78999999999752 122222222210 112 34
Q ss_pred cEEEEEecchhhhcccc---------CCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhC------Cc
Q 037222 291 SKVVFATRFIDVCGSME---------ADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECG------GL 355 (904)
Q Consensus 291 s~IivTtR~~~v~~~~~---------~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~------Gl 355 (904)
..||+||+...+...+. -...+.+.+|+.++++++|...+...... ..--.+....|++.|+ |.
T Consensus 180 v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~G~ 258 (412)
T 1w5s_A 180 IGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRD-TVWEPRHLELISDVYGEDKGGDGS 258 (412)
T ss_dssp EEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCT-TSCCHHHHHHHHHHHCGGGTSCCC
T ss_pred EEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCC-CCCChHHHHHHHHHHHHhccCCCc
Confidence 55888887655321111 12239999999999999998765311100 1112456788999999 99
Q ss_pred hhHHHHHHHHHh-----cC---CCHHHHHHHHHHHhhchhccCCchhhh-HhhHhhcccCCCchhhhHHHhHhcCCC--C
Q 037222 356 PLALITIGRAMA-----CK---RTAEEWIHAVEVLRRSAFEFAGLGKEV-YPLLKFSYDSLQNETIRSCFLYCCLYP--E 424 (904)
Q Consensus 356 PLai~~~~~~l~-----~~---~~~~~w~~~~~~l~~~~~~~~~~~~~v-~~~l~~sy~~L~~~~~k~cfl~~~~fp--~ 424 (904)
|..+..+..... .. -+.+.+..+... .. ...+.-++..||+ +.+.++..++.+. .
T Consensus 259 p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~-------------~~~~~~~~~~l~~l~~-~~~~~l~aia~l~~~~ 324 (412)
T 1w5s_A 259 ARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSE-------------NEAASIQTHELEALSI-HELIILRLIAEATLGG 324 (412)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH-------------C------CCSSSSSCH-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH-------------HhccchHHHHHHcCCH-HHHHHHHHHHHHHhcC
Confidence 976655543221 11 123333332211 01 2344557788998 7888888787643 2
Q ss_pred CcccchHHHHHHHH--h-cCCccCcchhcHHHHHHHHHHHHHHhcccccc-----cCCeeehhhHH
Q 037222 425 DYGILKWDLIDCWI--G-EGFLEESDRFSAENQGYYIVGTLIHACLLEGI-----EDDRVKMHDVV 482 (904)
Q Consensus 425 ~~~i~~~~li~~w~--a-~g~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~-----~~~~~~mHdlv 482 (904)
+..+....+...+. + .-. ... .........++++|++.+++... ..++|++|++.
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 325 MEWINAGLLRQRYEDASLTMY-NVK--PRGYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp CSSBCHHHHHHHHHHHHHHHS-CCC--CCCHHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred CCCccHHHHHHHHHHHHHhhc-CCC--CCCHHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 33455555554442 2 110 000 11124456789999999999764 23456566554
No 80
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.61 E-value=2.7e-15 Score=160.85 Aligned_cols=146 Identities=19% Similarity=0.302 Sum_probs=125.0
Q ss_pred cccceeEEEeeccccccccCCCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccccccccCcEe
Q 037222 515 ESENVTRLSLMQNQIKILSEVPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELF 594 (904)
Q Consensus 515 ~~~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L 594 (904)
....+++|++.++.+..++.+..+++|+.|+++ ++.+..++. +..+++|++|++++| .++ .+| .++.+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~-~n~i~~~~~--~~~l~~L~~L~L~~n-~l~-~~~-~~~~l~~L~~L 112 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELK-DNQITDLAP--LKNLTKITELELSGN-PLK-NVS-AIAGLQSIKTL 112 (308)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECC-SSCCCCCGG--GTTCCSCCEEECCSC-CCS-CCG-GGTTCTTCCEE
T ss_pred HcCCcCEEEeeCCCccCchhhhccCCCCEEEcc-CCcCCCChh--HccCCCCCEEEccCC-cCC-Cch-hhcCCCCCCEE
Confidence 456899999999999988888899999999999 667888887 899999999999999 898 765 78999999999
Q ss_pred ecccCcccccchhhhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCCcccccCCCCccccCCCccchHhhcC
Q 037222 595 DISRTEIQELPEELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYECFHEAPEDSVLFGGGEVLVQELLG 674 (904)
Q Consensus 595 ~l~~~~i~~Lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 674 (904)
++++|.+..+|. +..+++|++|++++| .++.++. ++.+++|++|++.+|.+.. +..+..
T Consensus 113 ~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~-----------------~~~l~~ 171 (308)
T 1h6u_A 113 DLTSTQITDVTP-LAGLSNLQVLYLDLN-QITNISP--LAGLTNLQYLSIGNAQVSD-----------------LTPLAN 171 (308)
T ss_dssp ECTTSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECCSSCCCC-----------------CGGGTT
T ss_pred ECCCCCCCCchh-hcCCCCCCEEECCCC-ccCcCcc--ccCCCCccEEEccCCcCCC-----------------ChhhcC
Confidence 999999999875 899999999999999 7888887 8999999999999987652 122666
Q ss_pred CCCCcEEEEEecc
Q 037222 675 LKYLEVLELTLGS 687 (904)
Q Consensus 675 L~~L~~L~l~~~~ 687 (904)
+++|+.|+++.+.
T Consensus 172 l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 172 LSKLTTLKADDNK 184 (308)
T ss_dssp CTTCCEEECCSSC
T ss_pred CCCCCEEECCCCc
Confidence 7777777765443
No 81
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.61 E-value=1.9e-16 Score=180.91 Aligned_cols=314 Identities=15% Similarity=0.087 Sum_probs=192.7
Q ss_pred cceeEEEeeccccccc--cCC-CCCC----CceEEEeecCcccccc----cchhhcCCCcccEEEeecCCCcccccCccc
Q 037222 517 ENVTRLSLMQNQIKIL--SEV-PTCP----DLLTLFLDFNEELEMI----ADGFFQFMPSLKVLKISNCGNFTFQLPLGM 585 (904)
Q Consensus 517 ~~~r~l~l~~~~~~~l--~~~-~~~~----~L~~L~l~~~~~l~~~----~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i 585 (904)
..+++|++++|.+... ... ..++ +|++|++++ +.+... ....+..+++|++|++++| .++...+..+
T Consensus 56 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~-n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l 133 (461)
T 1z7x_W 56 PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQN-CCLTGAGCGVLSSTLRTLPTLQELHLSDN-LLGDAGLQLL 133 (461)
T ss_dssp TTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTT-SCCBGGGHHHHHHHTTSCTTCCEEECCSS-BCHHHHHHHH
T ss_pred CCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccC-CCCCHHHHHHHHHHHccCCceeEEECCCC-cCchHHHHHH
Confidence 3677788877766441 111 1222 688888884 445432 1334778888888888888 6663333333
Q ss_pred c-----ccccCcEeecccCcccc-----cchhhhcCCCCcEeeccccccccccchhhhc-----CCCCCceeeecccCCc
Q 037222 586 S-----KLGSLELFDISRTEIQE-----LPEELKLLVNLKCLNLRWTSKLIRIPRQLIS-----NSSGLRVLRMFATGYE 650 (904)
Q Consensus 586 ~-----~L~~L~~L~l~~~~i~~-----Lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~-----~L~~L~~L~l~~~~~~ 650 (904)
. .+.+|++|++++|.+.. ++..+..+++|++|++++| .+...+...+. .+++|++|++.+|.+.
T Consensus 134 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 212 (461)
T 1z7x_W 134 CEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN-DINEAGVRVLCQGLKDSPCQLEALKLESCGVT 212 (461)
T ss_dssp HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHHHSCCCCCEEECTTSCCB
T ss_pred HHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCC-CcchHHHHHHHHHHhcCCCCceEEEccCCCCc
Confidence 2 24568888888887764 4666777888888888888 45443222122 3568888888887664
Q ss_pred ccccCCCCccccCCCccchHhhcCCCCCcEEEEEecchhhH--HHhhhc-ccccccceeeEecccCCCcch--hhhhhhc
Q 037222 651 CFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGSYQAL--QIFLSS-NKLKSCIRSLFLQLAGDTKSI--IDAAAFA 725 (904)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~--~~l~~~-~~~~~~L~~L~L~~~~~~~~~--~~~~~l~ 725 (904)
.... ......+..+++|+.|+++.+..... ..+... ....++|+.|++++|.-.... .+...+.
T Consensus 213 ~~~~-----------~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 281 (461)
T 1z7x_W 213 SDNC-----------RDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR 281 (461)
T ss_dssp TTHH-----------HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH
T ss_pred HHHH-----------HHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHh
Confidence 2110 01244567789999999987764432 222211 112468999999998533211 1234567
Q ss_pred ccCccCceeecccCCcceeeeccccccccccCCcccCCccEEeEeccCCCCcC-----c-ccccCCCccEEeEecCccch
Q 037222 726 DLNHLNELYIYEGIELEELKIDYTEIVRKRREPFVFRSLHRVTIFSCGKLKDV-----T-FLVFAPNLKSLELLQCDAME 799 (904)
Q Consensus 726 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l-----~-~l~~l~~L~~L~L~~c~~l~ 799 (904)
.+++|++|++++|.... ..+..+.. ......++|+.|++++|. ++.. + .+..+++|++|+|++|. ++
T Consensus 282 ~~~~L~~L~Ls~n~i~~-~~~~~l~~----~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~ 354 (461)
T 1z7x_W 282 AKESLKELSLAGNELGD-EGARLLCE----TLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNR-LE 354 (461)
T ss_dssp HCTTCCEEECTTCCCHH-HHHHHHHH----HHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSSB-CH
T ss_pred hCCCcceEECCCCCCch-HHHHHHHH----HhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCCc-cc
Confidence 78999999999885322 11111110 000134699999999995 4432 2 36678999999999974 44
Q ss_pred hhcccCcccCCccccCCC-CCCCcccEeecccccccc-----cccCCCCCCCCcceEeeccCCCCCC
Q 037222 800 EIISVGEIAETPEMMGHI-SPFENLQSLHLSYLPILR-----SIYWKPLPFTHLKKMEVRRCDQLRR 860 (904)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~-~~~~~L~~L~L~~~~~L~-----~i~~~~~~~~~L~~L~i~~C~~L~~ 860 (904)
+.... .+...+ ...++|+.|+|++|. ++ .++.....+++|++|++++| +++.
T Consensus 355 ~~~~~-------~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N-~i~~ 412 (461)
T 1z7x_W 355 DAGVR-------ELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNN-CLGD 412 (461)
T ss_dssp HHHHH-------HHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSS-SCCH
T ss_pred cccHH-------HHHHHHcCCCCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCCC-CCCH
Confidence 43210 000011 126799999999985 55 44444456899999999997 4543
No 82
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.61 E-value=3.8e-15 Score=156.60 Aligned_cols=123 Identities=21% Similarity=0.341 Sum_probs=56.6
Q ss_pred eEEEeeccccccccCCCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccc-cccccCcEeeccc
Q 037222 520 TRLSLMQNQIKILSEVPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGM-SKLGSLELFDISR 598 (904)
Q Consensus 520 r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i-~~L~~L~~L~l~~ 598 (904)
+.+..+++.+..+|.. -.++++.|+++ ++.+..++...|.++++|++|+++++ .++ .+|..+ ..+++|++|++++
T Consensus 19 ~~l~~~~~~l~~ip~~-~~~~l~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~-~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 19 NSVDCSSKKLTAIPSN-IPADTKKLDLQ-SNKLSSLPSKAFHRLTKLRLLYLNDN-KLQ-TLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCSEEECC-SSCCSCCCTTSSSSCTTCCEEECCSS-CCS-CCCTTTTSSCTTCCEEECCS
T ss_pred CEEEccCCCCCccCCC-CCCCCCEEECc-CCCCCeeCHHHhcCCCCCCEEECCCC-ccC-eeChhhhcCCCCCCEEECCC
Confidence 3444444444444321 11345555555 33344444444455555555555555 444 444332 4455555555555
Q ss_pred Ccccccchh-hhcCCCCcEeeccccccccccchhhhcCCCCCceeeeccc
Q 037222 599 TEIQELPEE-LKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFAT 647 (904)
Q Consensus 599 ~~i~~Lp~~-~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~ 647 (904)
|.+..+|.. +..+++|++|++++| .++.+|...+..+++|++|++.+|
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n 143 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYN 143 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CcCCcCCHhHcccccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCCC
Confidence 555444432 244455555555544 344444433444555555555444
No 83
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.60 E-value=4.7e-15 Score=156.54 Aligned_cols=109 Identities=21% Similarity=0.172 Sum_probs=72.3
Q ss_pred CCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccccccccCcEeecccCcccccc-hhhhcCCCCcEe
Q 037222 539 PDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELFDISRTEIQELP-EELKLLVNLKCL 617 (904)
Q Consensus 539 ~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~l~~~~i~~Lp-~~~~~L~~L~~L 617 (904)
++|++|+++ ++.+..++...|.++++|++|++++| .++...+..++.+++|++|++++|.+..++ ..+..+++|++|
T Consensus 28 ~~l~~L~ls-~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 28 FSTKNLDLS-FNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp TTCCEEECT-TCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CCccEEECC-CCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence 457777777 44566666655677777777777777 666223335677777777777777776665 456677777777
Q ss_pred eccccccccccchhhhcCCCCCceeeecccCCc
Q 037222 618 NLRWTSKLIRIPRQLISNSSGLRVLRMFATGYE 650 (904)
Q Consensus 618 ~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 650 (904)
++++| .+..++...++++++|++|++.+|.+.
T Consensus 106 ~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~ 137 (276)
T 2z62_A 106 VAVET-NLASLENFPIGHLKTLKELNVAHNLIQ 137 (276)
T ss_dssp ECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCC
T ss_pred ECCCC-CccccCchhcccCCCCCEEECcCCccc
Confidence 77776 556665534667777777777766554
No 84
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.59 E-value=4.6e-15 Score=157.41 Aligned_cols=128 Identities=18% Similarity=0.225 Sum_probs=100.5
Q ss_pred cceeEEEeeccccccccCCCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccccccccCcEeec
Q 037222 517 ENVTRLSLMQNQIKILSEVPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELFDI 596 (904)
Q Consensus 517 ~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~l 596 (904)
..++.+.+.++.+..+|... .++++.|+++ .+.+..++...|..+++|++|+++++ .++ .+|.. +.+++|++|++
T Consensus 10 ~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~-~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~-~~~~~-~~l~~L~~L~L 84 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTALPPDL-PKDTTILHLS-ENLLYTFSLATLMPYTRLTQLNLDRA-ELT-KLQVD-GTLPVLGTLDL 84 (290)
T ss_dssp TTCCEEECTTSCCSSCCSCC-CTTCCEEECT-TSCCSEEEGGGGTTCTTCCEEECTTS-CCC-EEECC-SCCTTCCEEEC
T ss_pred CCccEEECCCCCCCcCCCCC-CCCCCEEEcC-CCcCCccCHHHhhcCCCCCEEECCCC-ccC-cccCC-CCCCcCCEEEC
Confidence 45777888877777776432 3678888888 55577777667888888888888888 887 66654 78888888888
Q ss_pred ccCcccccchhhhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCCc
Q 037222 597 SRTEIQELPEELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYE 650 (904)
Q Consensus 597 ~~~~i~~Lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 650 (904)
++|.+..+|..+..+++|++|++++| .++.+|.+.+.++++|++|++.+|.+.
T Consensus 85 s~N~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~ 137 (290)
T 1p9a_G 85 SHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELK 137 (290)
T ss_dssp CSSCCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCCC
T ss_pred CCCcCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCCCC
Confidence 88888888888888888888888888 778887666888888888888877665
No 85
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.59 E-value=1e-14 Score=153.99 Aligned_cols=215 Identities=20% Similarity=0.188 Sum_probs=154.9
Q ss_pred cCCCcccCcccccccceeEEEeeccccccccC--CCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccc
Q 037222 503 AGAGLEQAPAVRESENVTRLSLMQNQIKILSE--VPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQ 580 (904)
Q Consensus 503 ~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~ 580 (904)
.+..+..+|.. -...+++|++++|.+..++. +..+++|++|+++ ++.+..++...|.++++|++|++++| .++..
T Consensus 15 ~~~~l~~ip~~-l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~ 91 (276)
T 2z62_A 15 MELNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLS-RCEIQTIEDGAYQSLSHLSTLILTGN-PIQSL 91 (276)
T ss_dssp TTSCCSSCCSS-SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECT-TCCCCEECTTTTTTCTTCCEEECTTC-CCCEE
T ss_pred cCCCccccCCC-CCCCccEEECCCCcccccCHhHhccccCCcEEECC-CCcCCccCHHHccCCcCCCEEECCCC-ccCcc
Confidence 44455555542 23579999999999988763 6889999999999 56788888877999999999999999 88834
Q ss_pred cCccccccccCcEeecccCcccccch-hhhcCCCCcEeeccccccccc--cchhhhcCCCCCceeeecccCCcccccCCC
Q 037222 581 LPLGMSKLGSLELFDISRTEIQELPE-ELKLLVNLKCLNLRWTSKLIR--IPRQLISNSSGLRVLRMFATGYECFHEAPE 657 (904)
Q Consensus 581 lp~~i~~L~~L~~L~l~~~~i~~Lp~-~~~~L~~L~~L~l~~~~~l~~--lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~ 657 (904)
.|..++.+++|++|++++|.+..++. .+..+++|++|++++| .++. +|.. +.++++|++|++.+|.+....
T Consensus 92 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~~---- 165 (276)
T 2z62_A 92 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIY---- 165 (276)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGG-GGGCTTCCEEECCSSCCCEEC----
T ss_pred ChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCC-ccceecCchh-hccCCCCCEEECCCCCCCcCC----
Confidence 45779999999999999999998876 6899999999999999 6776 5665 899999999999999776421
Q ss_pred CccccCCCccchHhhcCCCCCc-EEEEEecchhhHHHhhhcccccccceeeEecccCCCcchhhhhhhcccCccCceeec
Q 037222 658 DSVLFGGGEVLVQELLGLKYLE-VLELTLGSYQALQIFLSSNKLKSCIRSLFLQLAGDTKSIIDAAAFADLNHLNELYIY 736 (904)
Q Consensus 658 ~~~~~~~~~~~~~~l~~L~~L~-~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~ 736 (904)
...+..+..++.|. .|+++ ++..... . .......+|+.|+++
T Consensus 166 --------~~~~~~l~~L~~l~l~L~ls--------------------------~n~l~~~-~--~~~~~~~~L~~L~L~ 208 (276)
T 2z62_A 166 --------CTDLRVLHQMPLLNLSLDLS--------------------------LNPMNFI-Q--PGAFKEIRLKELALD 208 (276)
T ss_dssp --------GGGGHHHHTCTTCCEEEECC--------------------------SSCCCEE-C--TTSSCSCCEEEEECC
T ss_pred --------HHHhhhhhhccccceeeecC--------------------------CCccccc-C--ccccCCCcccEEECC
Confidence 12344444554444 34443 2221111 0 111123478888888
Q ss_pred ccCCcceeeeccccccccccCCcccCCccEEeEeccC
Q 037222 737 EGIELEELKIDYTEIVRKRREPFVFRSLHRVTIFSCG 773 (904)
Q Consensus 737 ~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~ 773 (904)
+|. +..+....+ ..+++|+.|+|++|+
T Consensus 209 ~n~-l~~~~~~~~---------~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 209 TNQ-LKSVPDGIF---------DRLTSLQKIWLHTNP 235 (276)
T ss_dssp SSC-CSCCCTTTT---------TTCCSCCEEECCSSC
T ss_pred CCc-eeecCHhHh---------cccccccEEEccCCc
Confidence 775 333322222 367888888888875
No 86
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.59 E-value=1.8e-15 Score=159.20 Aligned_cols=128 Identities=21% Similarity=0.338 Sum_probs=75.1
Q ss_pred ccceeEEEeeccccccccCCCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCc-cccccccCcEe
Q 037222 516 SENVTRLSLMQNQIKILSEVPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPL-GMSKLGSLELF 594 (904)
Q Consensus 516 ~~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~-~i~~L~~L~~L 594 (904)
...++.+.+.++.+..++.+..+++|+.|+++ ++.+..++ .+..+++|++|++++| .++ .+|. .++.+++|++|
T Consensus 40 l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~-~n~l~~~~--~l~~l~~L~~L~L~~n-~l~-~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQGIQYLPNVRYLALG-GNKLHDIS--ALKELTNLTYLILTGN-QLQ-SLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HTTCCEEECTTSCCCCCTTGGGCTTCCEEECT-TSCCCCCG--GGTTCTTCCEEECTTS-CCC-CCCTTTTTTCTTCCEE
T ss_pred ccceeeeeeCCCCcccccccccCCCCcEEECC-CCCCCCch--hhcCCCCCCEEECCCC-ccC-ccChhHhcCCcCCCEE
Confidence 34566666666666655555666666666666 33454443 2556666666666666 665 3333 34566666666
Q ss_pred ecccCcccccchh-hhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCC
Q 037222 595 DISRTEIQELPEE-LKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGY 649 (904)
Q Consensus 595 ~l~~~~i~~Lp~~-~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~ 649 (904)
++++|.+..+|.. +..+++|++|++++| .++.+|...++++++|++|++.+|.+
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l 169 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQL 169 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCc
Confidence 6666666655543 456666666666666 55556554455666666666665544
No 87
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.59 E-value=1.2e-14 Score=158.96 Aligned_cols=104 Identities=16% Similarity=0.249 Sum_probs=82.6
Q ss_pred eEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCc-cccccccCcEeecccCcc-cccch-hhhcCCCCcEee
Q 037222 542 LTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPL-GMSKLGSLELFDISRTEI-QELPE-ELKLLVNLKCLN 618 (904)
Q Consensus 542 ~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~-~i~~L~~L~~L~l~~~~i-~~Lp~-~~~~L~~L~~L~ 618 (904)
++++.+ ++.++.+|.++ .++|++|+|++| .|+ .+|. .+.+|++|++|+|++|.+ +.+|. .+.+|++|+++.
T Consensus 12 ~~v~C~-~~~Lt~iP~~l---~~~l~~L~Ls~N-~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l 85 (350)
T 4ay9_X 12 RVFLCQ-ESKVTEIPSDL---PRNAIELRFVLT-KLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 85 (350)
T ss_dssp TEEEEE-STTCCSCCTTC---CTTCSEEEEESC-CCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEE
T ss_pred CEEEec-CCCCCccCcCc---CCCCCEEEccCC-cCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhh
Confidence 567777 56788898774 357899999999 999 8886 578999999999999987 44665 467888888765
Q ss_pred ccccccccccchhhhcCCCCCceeeecccCCcc
Q 037222 619 LRWTSKLIRIPRQLISNSSGLRVLRMFATGYEC 651 (904)
Q Consensus 619 l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~ 651 (904)
..++..+..+|.+.+..+++|++|++.+|.+..
T Consensus 86 ~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~ 118 (350)
T 4ay9_X 86 IEKANNLLYINPEAFQNLPNLQYLLISNTGIKH 118 (350)
T ss_dssp EEEETTCCEECTTSBCCCTTCCEEEEEEECCSS
T ss_pred cccCCcccccCchhhhhcccccccccccccccc
Confidence 555448888887778999999999999887753
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.59 E-value=1e-15 Score=166.81 Aligned_cols=225 Identities=16% Similarity=0.131 Sum_probs=159.6
Q ss_pred CcccEEEeecCCCcccccCcccccc--ccCcEeecccCcccccchhhhcCCCCcEeeccccccccc--cchhhhcCCCCC
Q 037222 564 PSLKVLKISNCGNFTFQLPLGMSKL--GSLELFDISRTEIQELPEELKLLVNLKCLNLRWTSKLIR--IPRQLISNSSGL 639 (904)
Q Consensus 564 ~~Lr~L~l~~~~~i~~~lp~~i~~L--~~L~~L~l~~~~i~~Lp~~~~~L~~L~~L~l~~~~~l~~--lp~~~i~~L~~L 639 (904)
..++.|+++++ .+. |..++.+ .++++|++++|.+...+..+..+++|++|++++| .+.. +|. .+.++++|
T Consensus 47 ~~~~~l~l~~~-~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~-~~~~~~~L 120 (336)
T 2ast_B 47 SLWQTLDLTGK-NLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNS-VIEVSTLHG-ILSQCSKL 120 (336)
T ss_dssp TTSSEEECTTC-BCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTC-EECHHHHHH-HHTTBCCC
T ss_pred hhheeeccccc-cCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCC-CcCHHHHHH-HHhhCCCC
Confidence 34788899888 665 4566777 8999999999998888777888999999999999 4554 565 38899999
Q ss_pred ceeeecccCCcccccCCCCccccCCCccchHhhcCCCCCcEEEEEecchhhHHHhhhcccccccceeeEecccCCCcchh
Q 037222 640 RVLRMFATGYECFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQIFLSSNKLKSCIRSLFLQLAGDTKSII 719 (904)
Q Consensus 640 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~ 719 (904)
++|++.+|.+. ...+..+..+++| +.|++++|...+...
T Consensus 121 ~~L~L~~~~l~---------------~~~~~~l~~~~~L--------------------------~~L~L~~~~~l~~~~ 159 (336)
T 2ast_B 121 QNLSLEGLRLS---------------DPIVNTLAKNSNL--------------------------VRLNLSGCSGFSEFA 159 (336)
T ss_dssp SEEECTTCBCC---------------HHHHHHHTTCTTC--------------------------SEEECTTCBSCCHHH
T ss_pred CEEeCcCcccC---------------HHHHHHHhcCCCC--------------------------CEEECCCCCCCCHHH
Confidence 99999987643 2233344445544 445555553333222
Q ss_pred hhhhhcccCccCceeecccCCccee-eeccccccccccCCcccC-CccEEeEeccC-CCC--cCc-ccccCCCccEEeEe
Q 037222 720 DAAAFADLNHLNELYIYEGIELEEL-KIDYTEIVRKRREPFVFR-SLHRVTIFSCG-KLK--DVT-FLVFAPNLKSLELL 793 (904)
Q Consensus 720 ~~~~l~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~~~~~~~~l~-~L~~L~L~~c~-~l~--~l~-~l~~l~~L~~L~L~ 793 (904)
+...+..+++|++|++++|..+... .+... ..++ +|++|++++|. .++ .++ .+..+++|++|+|+
T Consensus 160 l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~---------~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~ 230 (336)
T 2ast_B 160 LQTLLSSCSRLDELNLSWCFDFTEKHVQVAV---------AHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS 230 (336)
T ss_dssp HHHHHHHCTTCCEEECCCCTTCCHHHHHHHH---------HHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECT
T ss_pred HHHHHhcCCCCCEEcCCCCCCcChHHHHHHH---------HhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCC
Confidence 2245778899999999999544421 12222 3678 99999999995 343 233 36789999999999
Q ss_pred cCccchhhcccCcccCCccccCCCCCCCcccEeecccccccccccC-CCCCCCCcceEeeccC
Q 037222 794 QCDAMEEIISVGEIAETPEMMGHISPFENLQSLHLSYLPILRSIYW-KPLPFTHLKKMEVRRC 855 (904)
Q Consensus 794 ~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i~~-~~~~~~~L~~L~i~~C 855 (904)
+|..+++... ..+..+++|+.|+|++|..+..... ....+++|+.|++++|
T Consensus 231 ~~~~l~~~~~-----------~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 231 DSVMLKNDCF-----------QEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TCTTCCGGGG-----------GGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCcCCHHHH-----------HHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 9875543321 1456789999999999974443211 2446999999999998
No 89
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.58 E-value=9.8e-15 Score=153.47 Aligned_cols=197 Identities=19% Similarity=0.184 Sum_probs=90.3
Q ss_pred ceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCc-cccccccCcEeecccCcccccchhh-hcCCCCcEee
Q 037222 541 LLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPL-GMSKLGSLELFDISRTEIQELPEEL-KLLVNLKCLN 618 (904)
Q Consensus 541 L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~-~i~~L~~L~~L~l~~~~i~~Lp~~~-~~L~~L~~L~ 618 (904)
.++++++ ++.+..+|..+ .++|++|+++++ .++ .+|. .++.+++|++|++++|.+..+|..+ ..+++|++|+
T Consensus 18 ~~~l~~~-~~~l~~ip~~~---~~~l~~L~l~~n-~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 18 KNSVDCS-SKKLTAIPSNI---PADTKKLDLQSN-KLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTEEECT-TSCCSSCCSCC---CTTCSEEECCSS-CCS-CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE
T ss_pred CCEEEcc-CCCCCccCCCC---CCCCCEEECcCC-CCC-eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEE
Confidence 4445555 33344444432 134555555555 554 3332 4555555555555555555554433 4455555555
Q ss_pred ccccccccccchhhhcCCCCCceeeecccCCcccccCCCCccccCCCccchHhhcCCCCCcEEEEEecchhhHHHhhhcc
Q 037222 619 LRWTSKLIRIPRQLISNSSGLRVLRMFATGYECFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQIFLSSN 698 (904)
Q Consensus 619 l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~ 698 (904)
+++| .+..+|.+.+.++++|++|++.+|.+.... ...+..+++|+.|+++.+....+... ..
T Consensus 92 l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---------------~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~ 153 (270)
T 2o6q_A 92 VTDN-KLQALPIGVFDQLVNLAELRLDRNQLKSLP---------------PRVFDSLTKLTYLSLGYNELQSLPKG--VF 153 (270)
T ss_dssp CCSS-CCCCCCTTTTTTCSSCCEEECCSSCCCCCC---------------TTTTTTCTTCCEEECCSSCCCCCCTT--TT
T ss_pred CCCC-cCCcCCHhHcccccCCCEEECCCCccCeeC---------------HHHhCcCcCCCEEECCCCcCCccCHh--Hc
Confidence 5555 445555444455555555555555443211 11134455555555544432221110 01
Q ss_pred cccccceeeEecccCCCcchhhhhhhcccCccCceeecccCCcceeeeccccccccccCCcccCCccEEeEeccC
Q 037222 699 KLKSCIRSLFLQLAGDTKSIIDAAAFADLNHLNELYIYEGIELEELKIDYTEIVRKRREPFVFRSLHRVTIFSCG 773 (904)
Q Consensus 699 ~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~ 773 (904)
..+++|+.|.++++....... ..+..+++|+.|++++|.. ..+....+ ..+++|+.|+|++|+
T Consensus 154 ~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~N~l-~~~~~~~~---------~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 154 DKLTSLKELRLYNNQLKRVPE--GAFDKLTELKTLKLDNNQL-KRVPEGAF---------DSLEKLKMLQLQENP 216 (270)
T ss_dssp TTCTTCCEEECCSSCCSCCCT--TTTTTCTTCCEEECCSSCC-SCCCTTTT---------TTCTTCCEEECCSSC
T ss_pred cCCcccceeEecCCcCcEeCh--hHhccCCCcCEEECCCCcC-CcCCHHHh---------ccccCCCEEEecCCC
Confidence 112455555555443221111 2345556666666666532 22222112 246667777776664
No 90
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.58 E-value=5.7e-15 Score=156.67 Aligned_cols=199 Identities=16% Similarity=0.088 Sum_probs=142.4
Q ss_pred CCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccccccccCcEeecccCcccccchhhhcCCCCc
Q 037222 536 PTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELFDISRTEIQELPEELKLLVNLK 615 (904)
Q Consensus 536 ~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~l~~~~i~~Lp~~~~~L~~L~ 615 (904)
..++++++++++ .+.+..+|..++ +.|++|++++| .++...|..+..+++|++|++++|.++.+|.. +.+++|+
T Consensus 7 ~~l~~l~~l~~~-~~~l~~ip~~~~---~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~ 80 (290)
T 1p9a_G 7 SKVASHLEVNCD-KRNLTALPPDLP---KDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLG 80 (290)
T ss_dssp ECSTTCCEEECT-TSCCSSCCSCCC---TTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCC
T ss_pred cccCCccEEECC-CCCCCcCCCCCC---CCCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCC
Confidence 567889999999 667888887643 68999999999 88844567789999999999999999988765 7899999
Q ss_pred EeeccccccccccchhhhcCCCCCceeeecccCCcccccCCCCccccCCCccchHhhcCCCCCcEEEEEecchhhHHHhh
Q 037222 616 CLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYECFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQIFL 695 (904)
Q Consensus 616 ~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~ 695 (904)
+|++++| .++.+|.. +..+++|++|++.+|.+..... ..+..+++|+.|+++
T Consensus 81 ~L~Ls~N-~l~~l~~~-~~~l~~L~~L~l~~N~l~~l~~---------------~~~~~l~~L~~L~L~----------- 132 (290)
T 1p9a_G 81 TLDLSHN-QLQSLPLL-GQTLPALTVLDVSFNRLTSLPL---------------GALRGLGELQELYLK----------- 132 (290)
T ss_dssp EEECCSS-CCSSCCCC-TTTCTTCCEEECCSSCCCCCCS---------------STTTTCTTCCEEECT-----------
T ss_pred EEECCCC-cCCcCchh-hccCCCCCEEECCCCcCcccCH---------------HHHcCCCCCCEEECC-----------
Confidence 9999999 78899975 8899999999999887764221 124555656555544
Q ss_pred hcccccccceeeEecccCCCcchhhhhhhcccCccCceeecccCCcceeeeccccccccccCCcccCCccEEeEeccCCC
Q 037222 696 SSNKLKSCIRSLFLQLAGDTKSIIDAAAFADLNHLNELYIYEGIELEELKIDYTEIVRKRREPFVFRSLHRVTIFSCGKL 775 (904)
Q Consensus 696 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l 775 (904)
++....... ..+..+++|+.|++++|.. ..+....+ ..+++|+.|+|++| .+
T Consensus 133 ---------------~N~l~~~~~--~~~~~l~~L~~L~L~~N~l-~~l~~~~~---------~~l~~L~~L~L~~N-~l 184 (290)
T 1p9a_G 133 ---------------GNELKTLPP--GLLTPTPKLEKLSLANNNL-TELPAGLL---------NGLENLDTLLLQEN-SL 184 (290)
T ss_dssp ---------------TSCCCCCCT--TTTTTCTTCCEEECTTSCC-SCCCTTTT---------TTCTTCCEEECCSS-CC
T ss_pred ---------------CCCCCccCh--hhcccccCCCEEECCCCcC-CccCHHHh---------cCcCCCCEEECCCC-cC
Confidence 322111111 2456677888888877643 33322222 25778888888887 45
Q ss_pred CcCc-ccccCCCccEEeEecCc
Q 037222 776 KDVT-FLVFAPNLKSLELLQCD 796 (904)
Q Consensus 776 ~~l~-~l~~l~~L~~L~L~~c~ 796 (904)
+.+| .+..+++|+.|+|++++
T Consensus 185 ~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 185 YTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CCCCTTTTTTCCCSEEECCSCC
T ss_pred CccChhhcccccCCeEEeCCCC
Confidence 5554 36667788888887654
No 91
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.57 E-value=2.1e-15 Score=178.02 Aligned_cols=309 Identities=15% Similarity=0.117 Sum_probs=174.7
Q ss_pred cceeEEEeecccccc-----ccC-CCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcc--cccCcccccc
Q 037222 517 ENVTRLSLMQNQIKI-----LSE-VPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFT--FQLPLGMSKL 588 (904)
Q Consensus 517 ~~~r~l~l~~~~~~~-----l~~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~--~~lp~~i~~L 588 (904)
..++.|.+..+.+.. ++. ...+++|++|.+++ +.+..++ ..+..+++|+.|++++..... ...+..+..+
T Consensus 192 ~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~-~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~ 269 (592)
T 3ogk_B 192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGD-FEILELV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFP 269 (592)
T ss_dssp CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSS-CBGGGGH-HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCC
T ss_pred CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccC-ccHHHHH-HHHhhhhHHHhhcccccccccchHHHHHHhhcc
Confidence 467888888776652 222 25688999999994 5566666 447888888888887541210 1334455666
Q ss_pred ccCcEeecccCcccccchhhhcCCCCcEeeccccccccccc-hhhhcCCCCCceeeecccCCccccc--------CCCCc
Q 037222 589 GSLELFDISRTEIQELPEELKLLVNLKCLNLRWTSKLIRIP-RQLISNSSGLRVLRMFATGYECFHE--------APEDS 659 (904)
Q Consensus 589 ~~L~~L~l~~~~i~~Lp~~~~~L~~L~~L~l~~~~~l~~lp-~~~i~~L~~L~~L~l~~~~~~~~~~--------~~~~~ 659 (904)
++|+.|+++++....+|..+..+++|++|++++|. +.... ...+.++++|++|++..+ +..... .....
T Consensus 270 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~-~~~~~l~~~~~~~~~L~~L 347 (592)
T 3ogk_B 270 RKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNV-IGDRGLEVLAQYCKQLKRL 347 (592)
T ss_dssp TTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEE
T ss_pred ccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCc-cCHHHHHHHHHhCCCCCEE
Confidence 66666666666555666666666666666666663 32211 122455666666666521 110000 00000
Q ss_pred ccc-------------CCCccchHh-hcCCCCCcEEEEEecchhh--HHHhhhcccccccceeeEeccc---CCCcch--
Q 037222 660 VLF-------------GGGEVLVQE-LLGLKYLEVLELTLGSYQA--LQIFLSSNKLKSCIRSLFLQLA---GDTKSI-- 718 (904)
Q Consensus 660 ~~~-------------~~~~~~~~~-l~~L~~L~~L~l~~~~~~~--~~~l~~~~~~~~~L~~L~L~~~---~~~~~~-- 718 (904)
.+. ..+...+.. ...+++|+.|++..+.... +..+. ..+++|+.|.+.++ ...+..
T Consensus 348 ~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~---~~~~~L~~L~l~~~~~~n~l~~~p~ 424 (592)
T 3ogk_B 348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIG---TYLKNLCDFRLVLLDREERITDLPL 424 (592)
T ss_dssp EEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHH---HHCCSCCEEEEEECSCCSCCSSCCC
T ss_pred EeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHH---hhCCCCcEEEEeecCCCccccCchH
Confidence 000 001112222 2346777777775544322 22221 12357888888743 233321
Q ss_pred --hhhhhhcccCccCceeecccCC-cceeeeccccccccccCCcccCCccEEeEeccCCCCc--Cc-ccccCCCccEEeE
Q 037222 719 --IDAAAFADLNHLNELYIYEGIE-LEELKIDYTEIVRKRREPFVFRSLHRVTIFSCGKLKD--VT-FLVFAPNLKSLEL 792 (904)
Q Consensus 719 --~~~~~l~~~~~L~~L~l~~~~~-l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~--l~-~l~~l~~L~~L~L 792 (904)
.+...+..+++|+.|+++.|.+ +....+..+. ..+++|+.|+|++|. +++ ++ .+..+++|++|+|
T Consensus 425 ~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~--------~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l 495 (592)
T 3ogk_B 425 DNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIG--------QYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEM 495 (592)
T ss_dssp HHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHH--------HSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEE
T ss_pred HHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHH--------HhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeec
Confidence 1223456678888888876553 2211122222 258899999999985 543 33 3578999999999
Q ss_pred ecCccchhh-cccCcccCCccccCCCCCCCcccEeecccccccccccCC--CCCCCCcceEeecc
Q 037222 793 LQCDAMEEI-ISVGEIAETPEMMGHISPFENLQSLHLSYLPILRSIYWK--PLPFTHLKKMEVRR 854 (904)
Q Consensus 793 ~~c~~l~~~-~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i~~~--~~~~~~L~~L~i~~ 854 (904)
++|. +++. +. .....+++|+.|+|++|. ++..... ...+|.|....+..
T Consensus 496 ~~n~-l~~~~~~-----------~~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 496 RGCC-FSERAIA-----------AAVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWNIELIPS 547 (592)
T ss_dssp ESCC-CBHHHHH-----------HHHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEEEEEECC
T ss_pred cCCC-CcHHHHH-----------HHHHhcCccCeeECcCCc-CCHHHHHHHHHhCCCcEEEEecC
Confidence 9998 4332 11 123468999999999997 6543222 23577777666654
No 92
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.56 E-value=1.7e-15 Score=168.37 Aligned_cols=86 Identities=16% Similarity=0.144 Sum_probs=47.6
Q ss_pred CCCCCceEEEeecCcccccccc----hhhcCCCcccEEEeecC--CCcccccCccc-------cccccCcEeecccCccc
Q 037222 536 PTCPDLLTLFLDFNEELEMIAD----GFFQFMPSLKVLKISNC--GNFTFQLPLGM-------SKLGSLELFDISRTEIQ 602 (904)
Q Consensus 536 ~~~~~L~~L~l~~~~~l~~~~~----~~~~~l~~Lr~L~l~~~--~~i~~~lp~~i-------~~L~~L~~L~l~~~~i~ 602 (904)
..+++|++|+++ ++.+..... ..+..+++|++|+|++| ..+++.+|..+ ..+++|++|+|++|.+.
T Consensus 29 ~~~~~L~~L~L~-~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 29 LEDDSVKEIVLS-GNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHCSCCCEEECT-TSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred hcCCCccEEECC-CCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 445666666666 333433221 12456666667766665 12222334333 45666666666666665
Q ss_pred c-----cchhhhcCCCCcEeecccc
Q 037222 603 E-----LPEELKLLVNLKCLNLRWT 622 (904)
Q Consensus 603 ~-----Lp~~~~~L~~L~~L~l~~~ 622 (904)
. +|..+..+++|++|++++|
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n 132 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNN 132 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSS
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCC
Confidence 4 5566666666666666666
No 93
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.55 E-value=3e-14 Score=155.77 Aligned_cols=238 Identities=16% Similarity=0.110 Sum_probs=163.7
Q ss_pred EEEeeccccccccCCCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCc-cccccccCcE-eeccc
Q 037222 521 RLSLMQNQIKILSEVPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPL-GMSKLGSLEL-FDISR 598 (904)
Q Consensus 521 ~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~-~i~~L~~L~~-L~l~~ 598 (904)
.+.-+++.++.+|... .++++.|+++ ++.++.+|.+.|.++++|++|+|++| .+...+|. .+.+|++|+. +.+++
T Consensus 13 ~v~C~~~~Lt~iP~~l-~~~l~~L~Ls-~N~i~~i~~~~f~~l~~L~~L~Ls~N-~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDL-PRNAIELRFV-LTKLRVIQKGAFSGFGDLEKIEISQN-DVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEEESTTCCSCCTTC-CTTCSEEEEE-SCCCSEECTTSSTTCTTCCEEEEECC-TTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred EEEecCCCCCccCcCc-CCCCCEEEcc-CCcCCCcCHHHHcCCCCCCEEECcCC-CCCCccChhHhhcchhhhhhhcccC
Confidence 4555667777776522 4689999999 67799999988999999999999999 76525664 5678888775 56667
Q ss_pred Ccccccc-hhhhcCCCCcEeeccccccccccchhhhcCCCCCceeeeccc-CCcccccCCCCccccCCCccchHhhcCC-
Q 037222 599 TEIQELP-EELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFAT-GYECFHEAPEDSVLFGGGEVLVQELLGL- 675 (904)
Q Consensus 599 ~~i~~Lp-~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~L- 675 (904)
|++..+| ..+..+++|++|++++| .+..+|...+....++..|++.++ .+..+.. ..+..+
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~---------------~~f~~~~ 153 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIER---------------NSFVGLS 153 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEECT---------------TSSTTSB
T ss_pred CcccccCchhhhhcccccccccccc-ccccCCchhhcccchhhhhhhccccccccccc---------------cchhhcc
Confidence 8999885 45789999999999999 788888754556677788887654 2221111 112333
Q ss_pred CCCcEEEEEecchhhHHHhhhcccccccceeeEecccCCCcchhhhhhhcccCccCceeecccCCcceeeeccccccccc
Q 037222 676 KYLEVLELTLGSYQALQIFLSSNKLKSCIRSLFLQLAGDTKSIIDAAAFADLNHLNELYIYEGIELEELKIDYTEIVRKR 755 (904)
Q Consensus 676 ~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~ 755 (904)
..++.|+++.+....+.. ......+|+.|.+.++...+.+.. ..+..+++|+.|++++|. ++.+ +.
T Consensus 154 ~~l~~L~L~~N~i~~i~~---~~f~~~~L~~l~l~~~n~l~~i~~-~~f~~l~~L~~LdLs~N~-l~~l-p~-------- 219 (350)
T 4ay9_X 154 FESVILWLNKNGIQEIHN---SAFNGTQLDELNLSDNNNLEELPN-DVFHGASGPVILDISRTR-IHSL-PS-------- 219 (350)
T ss_dssp SSCEEEECCSSCCCEECT---TSSTTEEEEEEECTTCTTCCCCCT-TTTTTEECCSEEECTTSC-CCCC-CS--------
T ss_pred hhhhhhccccccccCCCh---hhccccchhHHhhccCCcccCCCH-HHhccCcccchhhcCCCC-cCcc-Ch--------
Confidence 356677776655443322 111235677777776554444432 346777888888888774 3322 11
Q ss_pred cCCcccCCccEEeEeccCCCCcCcccccCCCccEEeEec
Q 037222 756 REPFVFRSLHRVTIFSCGKLKDVTFLVFAPNLKSLELLQ 794 (904)
Q Consensus 756 ~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~ 794 (904)
..+.+|+.|.+.+|..++.+|.+..+++|+.+++.+
T Consensus 220 ---~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 220 ---YGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp ---SSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred ---hhhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence 246778888888887788888888888888888764
No 94
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.54 E-value=3.2e-15 Score=176.53 Aligned_cols=84 Identities=13% Similarity=0.226 Sum_probs=48.3
Q ss_pred ccCCccEEeEeccCCCCc--Cccccc-CCCccEEeEecCccchhhcccCcccCCccccCCCCCCCcccEeeccccccccc
Q 037222 760 VFRSLHRVTIFSCGKLKD--VTFLVF-APNLKSLELLQCDAMEEIISVGEIAETPEMMGHISPFENLQSLHLSYLPILRS 836 (904)
Q Consensus 760 ~l~~L~~L~L~~c~~l~~--l~~l~~-l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~ 836 (904)
.+++|+.|+|++ .+++ ++.+.. +++|+.|+|++|......+. .....+++|+.|+|++|+. ..
T Consensus 430 ~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~-----------~l~~~~~~L~~L~L~~n~~-~~ 495 (594)
T 2p1m_B 430 HCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMH-----------HVLSGCDSLRKLEIRDCPF-GD 495 (594)
T ss_dssp HCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHH-----------HHHHHCTTCCEEEEESCSC-CH
T ss_pred hCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCCCcHHHHH-----------HHHhcCCCcCEEECcCCCC-cH
Confidence 345666666644 2222 122333 66777777766542221111 0124578999999999874 33
Q ss_pred ccC--CCCCCCCcceEeeccCCC
Q 037222 837 IYW--KPLPFTHLKKMEVRRCDQ 857 (904)
Q Consensus 837 i~~--~~~~~~~L~~L~i~~C~~ 857 (904)
... ....+++|+.|++++|+.
T Consensus 496 ~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 496 KALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHHHHHhCCCCCEEeeeCCCC
Confidence 221 233578999999999965
No 95
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.54 E-value=7.3e-15 Score=163.30 Aligned_cols=243 Identities=14% Similarity=0.067 Sum_probs=131.5
Q ss_pred cccccchhhcCCCcccEEEeecCCCcccc----cCccccccccCcEeecccCcccc----cchhh-------hcCCCCcE
Q 037222 552 LEMIADGFFQFMPSLKVLKISNCGNFTFQ----LPLGMSKLGSLELFDISRTEIQE----LPEEL-------KLLVNLKC 616 (904)
Q Consensus 552 l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~----lp~~i~~L~~L~~L~l~~~~i~~----Lp~~~-------~~L~~L~~ 616 (904)
+..++.. +..+++|++|+|++| .+... ++..+..+++|++|+|++|.+.. +|..+ ..+++|++
T Consensus 21 ~~~l~~~-l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~ 98 (386)
T 2ca6_A 21 EKSVFAV-LLEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHT 98 (386)
T ss_dssp HHTTSHH-HHHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCE
T ss_pred HHHHHHH-HhcCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccE
Confidence 4444443 566677777777777 66522 33345567777777777764432 23333 56677777
Q ss_pred eeccccccccc-----cchhhhcCCCCCceeeecccCCcccccCCCCccccCCCccchHhhcCC---------CCCcEEE
Q 037222 617 LNLRWTSKLIR-----IPRQLISNSSGLRVLRMFATGYECFHEAPEDSVLFGGGEVLVQELLGL---------KYLEVLE 682 (904)
Q Consensus 617 L~l~~~~~l~~-----lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L---------~~L~~L~ 682 (904)
|++++| .+.. +|.. +.++++|++|++.+|.+..... ......+..+ ++|+.|+
T Consensus 99 L~Ls~n-~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~l~~~~~-----------~~l~~~l~~l~~~~~~~~~~~L~~L~ 165 (386)
T 2ca6_A 99 VRLSDN-AFGPTAQEPLIDF-LSKHTPLEHLYLHNNGLGPQAG-----------AKIARALQELAVNKKAKNAPPLRSII 165 (386)
T ss_dssp EECCSC-CCCTTTHHHHHHH-HHHCTTCCEEECCSSCCHHHHH-----------HHHHHHHHHHHHHHHHHTCCCCCEEE
T ss_pred EECCCC-cCCHHHHHHHHHH-HHhCCCCCEEECcCCCCCHHHH-----------HHHHHHHHHHhhhhhcccCCCCcEEE
Confidence 777777 4444 4443 6677777777777776532110 0011123333 6777777
Q ss_pred EEecchh--hHHHhhhcccccccceeeEecccCCCcch--hhhh-hhcccCccCceeecccCCc----ceeeeccccccc
Q 037222 683 LTLGSYQ--ALQIFLSSNKLKSCIRSLFLQLAGDTKSI--IDAA-AFADLNHLNELYIYEGIEL----EELKIDYTEIVR 753 (904)
Q Consensus 683 l~~~~~~--~~~~l~~~~~~~~~L~~L~L~~~~~~~~~--~~~~-~l~~~~~L~~L~l~~~~~l----~~l~~~~~~~~~ 753 (904)
++.+... .+..+......+++|+.|.+++|...... .+.. .+..+++|+.|+|++|... .. .+..+
T Consensus 166 L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~-l~~~l---- 240 (386)
T 2ca6_A 166 CGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSA-LAIAL---- 240 (386)
T ss_dssp CCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHH-HHHHG----
T ss_pred CCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHH-HHHHH----
Confidence 7665542 33332222223356777777776432110 1112 5566777777777776532 11 11222
Q ss_pred cccCCcccCCccEEeEeccCCCCcC-----c-cc--ccCCCccEEeEecCccch----hhcccCcccCCccccCCC-CCC
Q 037222 754 KRREPFVFRSLHRVTIFSCGKLKDV-----T-FL--VFAPNLKSLELLQCDAME----EIISVGEIAETPEMMGHI-SPF 820 (904)
Q Consensus 754 ~~~~~~~l~~L~~L~L~~c~~l~~l-----~-~l--~~l~~L~~L~L~~c~~l~----~~~~~~~~~~~~~~~~~~-~~~ 820 (904)
..+++|+.|+|++|. +... + .+ +.+++|+.|+|++|.... .++. .+ ..+
T Consensus 241 -----~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~------------~l~~~l 302 (386)
T 2ca6_A 241 -----KSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT------------VIDEKM 302 (386)
T ss_dssp -----GGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHH------------HHHHHC
T ss_pred -----ccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHH------------HHHhcC
Confidence 256777777777774 3332 1 23 237777777777765333 1322 12 346
Q ss_pred CcccEeeccccc
Q 037222 821 ENLQSLHLSYLP 832 (904)
Q Consensus 821 ~~L~~L~L~~~~ 832 (904)
|+|+.|+|++|+
T Consensus 303 ~~L~~L~l~~N~ 314 (386)
T 2ca6_A 303 PDLLFLELNGNR 314 (386)
T ss_dssp TTCCEEECTTSB
T ss_pred CCceEEEccCCc
Confidence 777777777765
No 96
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.53 E-value=8.4e-15 Score=129.44 Aligned_cols=83 Identities=13% Similarity=0.124 Sum_probs=74.2
Q ss_pred cccChhhhhhHHHHhhhccceeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccchhHHHHHHHHHHHHHHHH
Q 037222 7 IACDGALFNRCLDCFLGKAAYLRNLPDNLVDLETELGRLIAAKNDVMMRVVNAERQQ-MRRLGQVEWWVSRVDAVKTGAD 85 (904)
Q Consensus 7 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~a~~~~-~~~~~~~~~Wl~~~~~~~~~~e 85 (904)
|+++.+ ++|+.+++.+|+.++.+|++++++|+++|++|++||.| |+.++ ...+++++.|+++||+++||+|
T Consensus 1 a~v~~l-l~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~d-------a~~~~~~~~d~~vk~W~~~vrdlaYD~E 72 (115)
T 3qfl_A 1 AAISNL-IPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIK-------IGEVPREQLDSQDKLWADEVRELSYVIE 72 (115)
T ss_dssp CTTCSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HTTSCGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH-------HHHhccccCCHHHHHHHHHHHHHHHHHH
Confidence 467888 99999999999999999999999999999999999999 66552 2246899999999999999999
Q ss_pred HHHhhhhhhhcc
Q 037222 86 ELITDGSEEIGE 97 (904)
Q Consensus 86 d~~d~~~~~~~~ 97 (904)
||+|+|.++...
T Consensus 73 D~iD~f~~~~~~ 84 (115)
T 3qfl_A 73 DVVDKFLVQVDG 84 (115)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc
Confidence 999999988753
No 97
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.50 E-value=1.4e-13 Score=136.95 Aligned_cols=151 Identities=16% Similarity=0.197 Sum_probs=128.0
Q ss_pred cccceeEEEeeccccccccCCCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccccccccCcEe
Q 037222 515 ESENVTRLSLMQNQIKILSEVPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELF 594 (904)
Q Consensus 515 ~~~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L 594 (904)
....++++++.++.+..++....+++|++|+++++ .+..++. +..+++|++|++++| .++...|..++.+++|++|
T Consensus 42 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n-~~~~~~~--l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLTGIEYAHNIKDLTINNI-HATNYNP--ISGLSNLERLRIMGK-DVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESC-CCSCCGG--GTTCTTCCEEEEECT-TCBGGGSCCCTTCTTCCEE
T ss_pred hcCCccEEeccCCCccChHHHhcCCCCCEEEccCC-CCCcchh--hhcCCCCCEEEeECC-ccCcccChhhcCCCCCCEE
Confidence 34578999999999998888889999999999954 6766653 889999999999999 8885588899999999999
Q ss_pred ecccCcccc-cchhhhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCCcccccCCCCccccCCCccchHhhc
Q 037222 595 DISRTEIQE-LPEELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYECFHEAPEDSVLFGGGEVLVQELL 673 (904)
Q Consensus 595 ~l~~~~i~~-Lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 673 (904)
++++|.+.. .|..+..+++|++|++++|..+..+|. +.++++|++|++.+|.+.. +..+.
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~-----------------~~~l~ 178 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHD-----------------YRGIE 178 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCC-----------------CTTGG
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcC-----------------hHHhc
Confidence 999999985 678899999999999999955888984 8999999999999997753 22477
Q ss_pred CCCCCcEEEEEecch
Q 037222 674 GLKYLEVLELTLGSY 688 (904)
Q Consensus 674 ~L~~L~~L~l~~~~~ 688 (904)
.+++|+.|++..+..
T Consensus 179 ~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 179 DFPKLNQLYAFSQTI 193 (197)
T ss_dssp GCSSCCEEEECBC--
T ss_pred cCCCCCEEEeeCccc
Confidence 788888888876653
No 98
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.50 E-value=1.5e-13 Score=144.50 Aligned_cols=168 Identities=21% Similarity=0.367 Sum_probs=138.3
Q ss_pred EEEcCCCcccCcccccccceeEEEeeccccccccCCCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCccc
Q 037222 500 LVCAGAGLEQAPAVRESENVTRLSLMQNQIKILSEVPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTF 579 (904)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~ 579 (904)
+...+..+..++.......++.|++.+|.+..++.+..+++|++|+++ ++.+..+++..|..+++|++|++++| .++
T Consensus 46 L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~- 122 (272)
T 3rfs_A 46 IIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILT-GNQLQSLPNGVFDKLTNLKELVLVEN-QLQ- 122 (272)
T ss_dssp EECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECT-TSCCCCCCTTTTTTCTTCCEEECTTS-CCC-
T ss_pred eeeCCCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECC-CCccCccChhHhcCCcCCCEEECCCC-cCC-
Confidence 334455555666666678999999999999888888999999999999 66788899888999999999999999 898
Q ss_pred ccCc-cccccccCcEeecccCcccccchh-hhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCCcccccCCC
Q 037222 580 QLPL-GMSKLGSLELFDISRTEIQELPEE-LKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYECFHEAPE 657 (904)
Q Consensus 580 ~lp~-~i~~L~~L~~L~l~~~~i~~Lp~~-~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~ 657 (904)
.+|. .++.+++|++|++++|.+..+|.. +..+++|++|++++| .++.+|...++.+++|++|++.+|.+....
T Consensus 123 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---- 197 (272)
T 3rfs_A 123 SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQNQLKSVP---- 197 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCC----
T ss_pred ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCCcCCccC----
Confidence 5554 478999999999999999998875 589999999999999 788888876789999999999999776421
Q ss_pred CccccCCCccchHhhcCCCCCcEEEEEec
Q 037222 658 DSVLFGGGEVLVQELLGLKYLEVLELTLG 686 (904)
Q Consensus 658 ~~~~~~~~~~~~~~l~~L~~L~~L~l~~~ 686 (904)
...+..+++|+.|++..+
T Consensus 198 -----------~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 198 -----------DGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp -----------TTTTTTCTTCCEEECCSS
T ss_pred -----------HHHHhCCcCCCEEEccCC
Confidence 122566677777666533
No 99
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.48 E-value=1.4e-13 Score=142.87 Aligned_cols=130 Identities=16% Similarity=0.197 Sum_probs=95.5
Q ss_pred ceeEEEeeccccccccCCCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccccccccCcEeecc
Q 037222 518 NVTRLSLMQNQIKILSEVPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELFDIS 597 (904)
Q Consensus 518 ~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~l~ 597 (904)
..++++..++.+..+|... .++++.|+++ ++.+..+++..|.++++|++|++++| .++...|..+..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~-~~~l~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGI-PADTEKLDLQ-STGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCSSCCSCC-CTTCCEEECT-TSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCccccCCCC-CCCCCEEEcc-CCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECC
Confidence 3456677777776665432 2678888888 55677777766788888888888888 7773444457788888888888
Q ss_pred cCcccccch-hhhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCCcc
Q 037222 598 RTEIQELPE-ELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYEC 651 (904)
Q Consensus 598 ~~~i~~Lp~-~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~ 651 (904)
+|.+..+|. .+..+++|++|++++| .++.+|.+.+.++++|++|++.+|.+..
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 145 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQLQS 145 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCCcCCc
Confidence 888887765 3577888888888888 7777877666788888888888776653
No 100
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.48 E-value=6.3e-14 Score=154.08 Aligned_cols=244 Identities=12% Similarity=0.086 Sum_probs=129.1
Q ss_pred CCCceEEEeecCcccccccc----hhhcCCC-cccEEEeecCCCcccccCcccccc-----ccCcEeecccCcccccchh
Q 037222 538 CPDLLTLFLDFNEELEMIAD----GFFQFMP-SLKVLKISNCGNFTFQLPLGMSKL-----GSLELFDISRTEIQELPEE 607 (904)
Q Consensus 538 ~~~L~~L~l~~~~~l~~~~~----~~~~~l~-~Lr~L~l~~~~~i~~~lp~~i~~L-----~~L~~L~l~~~~i~~Lp~~ 607 (904)
.++|+.|+++ ++.+...+. ..|.+++ +|++|+|++| .++...+..++.+ ++|++|++++|.+...+..
T Consensus 21 ~~~L~~L~Ls-~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 98 (362)
T 3goz_A 21 PHGVTSLDLS-LNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSD 98 (362)
T ss_dssp CTTCCEEECT-TSCGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred CCCceEEEcc-CCCCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHH
Confidence 3447777777 444666654 4566676 6777777777 6663445555554 6777777777776644332
Q ss_pred -----hhcC-CCCcEeeccccccccccchhhhc----C-CCCCceeeecccCCcccccCCCCccccCCCccchHhhcCCC
Q 037222 608 -----LKLL-VNLKCLNLRWTSKLIRIPRQLIS----N-SSGLRVLRMFATGYECFHEAPEDSVLFGGGEVLVQELLGLK 676 (904)
Q Consensus 608 -----~~~L-~~L~~L~l~~~~~l~~lp~~~i~----~-L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 676 (904)
+..+ ++|++|++++| .++..+...+. . .++|++|++.+|.+...+. ......+..++
T Consensus 99 ~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~-----------~~l~~~l~~~~ 166 (362)
T 3goz_A 99 ELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSS-----------DELIQILAAIP 166 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCH-----------HHHHHHHHTSC
T ss_pred HHHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHH-----------HHHHHHHhcCC
Confidence 3344 67777777777 45555543232 2 2477777777665542110 00111222222
Q ss_pred CCcEEEEEecchhhHHHhhhcccccccceeeEecccCCCc--chhhhhhhccc-CccCceeecccCCcceeeeccccccc
Q 037222 677 YLEVLELTLGSYQALQIFLSSNKLKSCIRSLFLQLAGDTK--SIIDAAAFADL-NHLNELYIYEGIELEELKIDYTEIVR 753 (904)
Q Consensus 677 ~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~--~~~~~~~l~~~-~~L~~L~l~~~~~l~~l~~~~~~~~~ 753 (904)
++|+.|+|++|.-.. ...+...+..+ ++|++|++++|.... .....+.
T Consensus 167 -------------------------~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~-~~~~~l~--- 217 (362)
T 3goz_A 167 -------------------------ANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL-KSYAELA--- 217 (362)
T ss_dssp -------------------------TTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG-SCHHHHH---
T ss_pred -------------------------ccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh-hHHHHHH---
Confidence 245555555553211 11111234445 478888888775322 1111110
Q ss_pred cccCCcc-cCCccEEeEeccCCCCcCcc------cccCCCccEEeEecCccchhhcccCcccCCccccCCCCCCCcccEe
Q 037222 754 KRREPFV-FRSLHRVTIFSCGKLKDVTF------LVFAPNLKSLELLQCDAMEEIISVGEIAETPEMMGHISPFENLQSL 826 (904)
Q Consensus 754 ~~~~~~~-l~~L~~L~L~~c~~l~~l~~------l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L 826 (904)
..... .++|+.|+|++| .++..+. +..+++|+.|+|++|. +..+... . ...+...+..+++|+.|
T Consensus 218 --~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~-l~~i~~~-~---~~~l~~~~~~l~~L~~L 289 (362)
T 3goz_A 218 --YIFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDI-VKNMSKE-Q---CKALGAAFPNIQKIILV 289 (362)
T ss_dssp --HHHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHH-HTTCCHH-H---HHHHHTTSTTCCEEEEE
T ss_pred --HHHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCC-ccccCHH-H---HHHHHHHhccCCceEEE
Confidence 00012 357888888888 4444322 4567888888888865 1111000 0 00011245577788888
Q ss_pred eccccc
Q 037222 827 HLSYLP 832 (904)
Q Consensus 827 ~L~~~~ 832 (904)
++++++
T Consensus 290 dL~~N~ 295 (362)
T 3goz_A 290 DKNGKE 295 (362)
T ss_dssp CTTSCB
T ss_pred ecCCCc
Confidence 888775
No 101
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.48 E-value=6.2e-15 Score=174.13 Aligned_cols=78 Identities=21% Similarity=0.296 Sum_probs=45.9
Q ss_pred cceeEEEeecccccc-----ccCC-CCCCCceEEEeecCccccccc----chhhcCCCcccEEEeecCCCcccccCcccc
Q 037222 517 ENVTRLSLMQNQIKI-----LSEV-PTCPDLLTLFLDFNEELEMIA----DGFFQFMPSLKVLKISNCGNFTFQLPLGMS 586 (904)
Q Consensus 517 ~~~r~l~l~~~~~~~-----l~~~-~~~~~L~~L~l~~~~~l~~~~----~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~ 586 (904)
..+++|++.+|.+.. ++.. ..+++|++|+++++. ..+. ..++..+++|++|++++|..+. .+|..+.
T Consensus 156 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~l~~~~~ 232 (594)
T 2p1m_B 156 RNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPLE-KLATLLQ 232 (594)
T ss_dssp TTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCHH-HHHHHHH
T ss_pred CCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcHH-HHHHHHh
Confidence 467777777666433 2222 367778888877443 1222 1223456777888877774455 4666666
Q ss_pred ccccCcEeecc
Q 037222 587 KLGSLELFDIS 597 (904)
Q Consensus 587 ~L~~L~~L~l~ 597 (904)
.+++|++|++.
T Consensus 233 ~~~~L~~L~l~ 243 (594)
T 2p1m_B 233 RAPQLEELGTG 243 (594)
T ss_dssp HCTTCSEEECS
T ss_pred cCCcceEcccc
Confidence 66666666644
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.48 E-value=8e-14 Score=147.94 Aligned_cols=122 Identities=20% Similarity=0.300 Sum_probs=55.0
Q ss_pred cceeEEEeeccccccccCCCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccccccccCcEeec
Q 037222 517 ENVTRLSLMQNQIKILSEVPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELFDI 596 (904)
Q Consensus 517 ~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~l 596 (904)
..++.+++.++.+..++.+..+++|++|+++ .+.+..+++ +..+++|++|++++| .++ .+| .++.+++|++|++
T Consensus 46 ~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~-~n~l~~~~~--l~~l~~L~~L~l~~n-~l~-~~~-~l~~l~~L~~L~L 119 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLN-GNKLTDIKP--LANLKNLGWLFLDEN-KVK-DLS-SLKDLKKLKSLSL 119 (291)
T ss_dssp HTCCEEECTTSCCCCCTTGGGCTTCCEEECC-SSCCCCCGG--GTTCTTCCEEECCSS-CCC-CGG-GGTTCTTCCEEEC
T ss_pred CcccEEEccCCCcccChhHhcCCCCCEEEcc-CCccCCCcc--cccCCCCCEEECCCC-cCC-CCh-hhccCCCCCEEEC
Confidence 3444455544444444444444444444444 333444433 444444444444444 444 333 2444444444444
Q ss_pred ccCcccccchhhhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccC
Q 037222 597 SRTEIQELPEELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATG 648 (904)
Q Consensus 597 ~~~~i~~Lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~ 648 (904)
++|.+..++ .+..+++|++|++++| .++.++. ++++++|++|++.+|.
T Consensus 120 ~~n~i~~~~-~l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~L~~N~ 167 (291)
T 1h6t_A 120 EHNGISDIN-GLVHLPQLESLYLGNN-KITDITV--LSRLTKLDTLSLEDNQ 167 (291)
T ss_dssp TTSCCCCCG-GGGGCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECCSSC
T ss_pred CCCcCCCCh-hhcCCCCCCEEEccCC-cCCcchh--hccCCCCCEEEccCCc
Confidence 444444442 3444444444444444 3444422 4444444444444443
No 103
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.47 E-value=3.1e-13 Score=140.23 Aligned_cols=168 Identities=22% Similarity=0.339 Sum_probs=139.1
Q ss_pred EEEcCCCcccCcccccccceeEEEeeccccccccC--CCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCc
Q 037222 500 LVCAGAGLEQAPAVRESENVTRLSLMQNQIKILSE--VPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNF 577 (904)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i 577 (904)
+...+..+..+|.. -...++.|.+.+|.+..++. +..+++|++|+++ ++.+..+++..|..+++|++|++++| .+
T Consensus 19 l~~~~~~l~~~p~~-~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~L~~n-~l 95 (251)
T 3m19_A 19 VDCQGKSLDSVPSG-IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLD-YNQLQTLSAGVFDDLTELGTLGLANN-QL 95 (251)
T ss_dssp EECTTCCCSSCCSC-CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT-TSCCCCCCTTTTTTCTTCCEEECTTS-CC
T ss_pred EecCCCCccccCCC-CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECC-CCcCCccCHhHhccCCcCCEEECCCC-cc
Confidence 44456666666653 23689999999999888654 5889999999999 66788888888999999999999999 99
Q ss_pred ccccC-ccccccccCcEeecccCcccccchh-hhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCCcccccC
Q 037222 578 TFQLP-LGMSKLGSLELFDISRTEIQELPEE-LKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYECFHEA 655 (904)
Q Consensus 578 ~~~lp-~~i~~L~~L~~L~l~~~~i~~Lp~~-~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~ 655 (904)
+ .+| ..++.+++|++|++++|.++.+|.. +..+++|++|++++| .++.+|.+.++.+++|++|++.+|.+.....
T Consensus 96 ~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~- 172 (251)
T 3m19_A 96 A-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH- 172 (251)
T ss_dssp C-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-
T ss_pred c-ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCcCCccCH-
Confidence 8 655 5578999999999999999999876 588999999999999 8899998668999999999999998764221
Q ss_pred CCCccccCCCccchHhhcCCCCCcEEEEEecc
Q 037222 656 PEDSVLFGGGEVLVQELLGLKYLEVLELTLGS 687 (904)
Q Consensus 656 ~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 687 (904)
..+..+++|+.|++..|.
T Consensus 173 --------------~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 173 --------------GAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp --------------TTTTTCTTCCEEECCSCC
T ss_pred --------------HHHhCCCCCCEEEeeCCc
Confidence 236677888888887654
No 104
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.47 E-value=5.6e-14 Score=150.94 Aligned_cols=209 Identities=13% Similarity=0.011 Sum_probs=129.7
Q ss_pred CCCcccEEEeecCCCcccccCccc--cccccCcEeecccCccccc-c----hhhhcCCCCcEeeccccccccccchhhhc
Q 037222 562 FMPSLKVLKISNCGNFTFQLPLGM--SKLGSLELFDISRTEIQEL-P----EELKLLVNLKCLNLRWTSKLIRIPRQLIS 634 (904)
Q Consensus 562 ~l~~Lr~L~l~~~~~i~~~lp~~i--~~L~~L~~L~l~~~~i~~L-p----~~~~~L~~L~~L~l~~~~~l~~lp~~~i~ 634 (904)
.+++|++|++++| .+.+..|..+ +.+++|++|++++|.+... | ..+..+++|++|++++| .+..+|...++
T Consensus 89 ~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~ 166 (310)
T 4glp_A 89 AYSRLKELTLEDL-KITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA-HSPAFSCEQVR 166 (310)
T ss_dssp HHSCCCEEEEESC-CCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC-SSCCCCTTSCC
T ss_pred ccCceeEEEeeCC-EeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCC-CcchhhHHHhc
Confidence 3466999999999 7776777777 8899999999999988752 2 34457889999999988 67777765588
Q ss_pred CCCCCceeeecccCCcccccCCCCccccCCCccchHhhcCCCCCcEEEEEecchhhHHHhhhcccccccceeeEecccCC
Q 037222 635 NSSGLRVLRMFATGYECFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQIFLSSNKLKSCIRSLFLQLAGD 714 (904)
Q Consensus 635 ~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~ 714 (904)
++++|++|++++|.+..... ......+..+++| +.|.+++|.-
T Consensus 167 ~l~~L~~L~Ls~N~l~~~~~-----------~~~~~~~~~l~~L--------------------------~~L~Ls~N~l 209 (310)
T 4glp_A 167 AFPALTSLDLSDNPGLGERG-----------LMAALCPHKFPAI--------------------------QNLALRNTGM 209 (310)
T ss_dssp CCTTCCEEECCSCTTCHHHH-----------HHTTSCTTSSCCC--------------------------CSCBCCSSCC
T ss_pred cCCCCCEEECCCCCCccchh-----------hhHHHhhhcCCCC--------------------------CEEECCCCCC
Confidence 89999999998886532000 0000001234444 4444444432
Q ss_pred Ccchhhhh-hhcccCccCceeecccCCcceeeeccccccccccCCcccCCccEEeEeccCCCCcCcccccCCCccEEeEe
Q 037222 715 TKSIIDAA-AFADLNHLNELYIYEGIELEELKIDYTEIVRKRREPFVFRSLHRVTIFSCGKLKDVTFLVFAPNLKSLELL 793 (904)
Q Consensus 715 ~~~~~~~~-~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~ 793 (904)
......+. .+..+++|++|++++|.... +.+..+. ....+++|++|+|++| .++.+|.-. .++|+.|+|+
T Consensus 210 ~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~-~~p~~~~------~~~~~~~L~~L~Ls~N-~l~~lp~~~-~~~L~~L~Ls 280 (310)
T 4glp_A 210 ETPTGVCAALAAAGVQPHSLDLSHNSLRA-TVNPSAP------RCMWSSALNSLNLSFA-GLEQVPKGL-PAKLRVLDLS 280 (310)
T ss_dssp CCHHHHHHHHHHHTCCCSSEECTTSCCCC-CCCSCCS------SCCCCTTCCCEECCSS-CCCSCCSCC-CSCCSCEECC
T ss_pred CchHHHHHHHHhcCCCCCEEECCCCCCCc-cchhhHH------hccCcCcCCEEECCCC-CCCchhhhh-cCCCCEEECC
Confidence 11111111 24566788888888775433 2122221 0012368888888887 455555311 3788888888
Q ss_pred cCccchhhcccCcccCCccccCCCCCCCcccEeeccccc
Q 037222 794 QCDAMEEIISVGEIAETPEMMGHISPFENLQSLHLSYLP 832 (904)
Q Consensus 794 ~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 832 (904)
+|. ++.++ ....+++|+.|+|++++
T Consensus 281 ~N~-l~~~~-------------~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 281 SNR-LNRAP-------------QPDELPEVDNLTLDGNP 305 (310)
T ss_dssp SCC-CCSCC-------------CTTSCCCCSCEECSSTT
T ss_pred CCc-CCCCc-------------hhhhCCCccEEECcCCC
Confidence 753 44332 24567888888888775
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.47 E-value=9.9e-14 Score=161.63 Aligned_cols=103 Identities=18% Similarity=0.313 Sum_probs=48.3
Q ss_pred CCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccccccccCcEeecccCcccccchhhhcCCCCc
Q 037222 536 PTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELFDISRTEIQELPEELKLLVNLK 615 (904)
Q Consensus 536 ~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~l~~~~i~~Lp~~~~~L~~L~ 615 (904)
..+++|+.|+++ ++.+..++. +..+++|++|+|++| .+. .+|. ++.|++|++|+|++|.+..+| .+..|++|+
T Consensus 40 ~~L~~L~~L~l~-~n~i~~l~~--l~~l~~L~~L~Ls~N-~l~-~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~ 112 (605)
T 1m9s_A 40 NELNSIDQIIAN-NSDIKSVQG--IQYLPNVTKLFLNGN-KLT-DIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLK 112 (605)
T ss_dssp HHHTTCCCCBCT-TCCCCCCTT--GGGCTTCCEEECTTS-CCC-CCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCC
T ss_pred hcCCCCCEEECc-CCCCCCChH--HccCCCCCEEEeeCC-CCC-CChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCC
Confidence 344445555554 333444432 444555555555555 444 3333 445555555555555444443 344455555
Q ss_pred EeeccccccccccchhhhcCCCCCceeeecccC
Q 037222 616 CLNLRWTSKLIRIPRQLISNSSGLRVLRMFATG 648 (904)
Q Consensus 616 ~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~ 648 (904)
+|+|++| .+..+|. +..|++|+.|++.+|.
T Consensus 113 ~L~Ls~N-~l~~l~~--l~~l~~L~~L~Ls~N~ 142 (605)
T 1m9s_A 113 SLSLEHN-GISDING--LVHLPQLESLYLGNNK 142 (605)
T ss_dssp EEECTTS-CCCCCGG--GGGCTTCSEEECCSSC
T ss_pred EEEecCC-CCCCCcc--ccCCCccCEEECCCCc
Confidence 5555544 3444432 4445555555554443
No 106
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.47 E-value=1.7e-13 Score=145.46 Aligned_cols=172 Identities=17% Similarity=0.247 Sum_probs=132.1
Q ss_pred CCCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccccccccCcEeecccCcccccchhhhcCCC
Q 037222 534 EVPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELFDISRTEIQELPEELKLLVN 613 (904)
Q Consensus 534 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~l~~~~i~~Lp~~~~~L~~ 613 (904)
....+++|+.|+++ ++.+..++. +..+++|++|++++| .++ .+|. ++.+++|++|++++|.+..+|. +..+++
T Consensus 41 ~~~~l~~L~~L~l~-~~~i~~~~~--~~~l~~L~~L~L~~n-~l~-~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~ 113 (291)
T 1h6t_A 41 TQNELNSIDQIIAN-NSDIKSVQG--IQYLPNVTKLFLNGN-KLT-DIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKK 113 (291)
T ss_dssp CHHHHHTCCEEECT-TSCCCCCTT--GGGCTTCCEEECCSS-CCC-CCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTT
T ss_pred chhhcCcccEEEcc-CCCcccChh--HhcCCCCCEEEccCC-ccC-CCcc-cccCCCCCEEECCCCcCCCChh-hccCCC
Confidence 34567788899998 556777754 788899999999999 888 6665 8889999999999998888764 888899
Q ss_pred CcEeeccccccccccchhhhcCCCCCceeeecccCCcccccCCCCccccCCCccchHhhcCCCCCcEEEEEecchhhHHH
Q 037222 614 LKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYECFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQI 693 (904)
Q Consensus 614 L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~ 693 (904)
|++|++++| .++.++. +..+++|++|++.+|.+.. +..+..+++|+.|+++.+....+..
T Consensus 114 L~~L~L~~n-~i~~~~~--l~~l~~L~~L~l~~n~l~~-----------------~~~l~~l~~L~~L~L~~N~l~~~~~ 173 (291)
T 1h6t_A 114 LKSLSLEHN-GISDING--LVHLPQLESLYLGNNKITD-----------------ITVLSRLTKLDTLSLEDNQISDIVP 173 (291)
T ss_dssp CCEEECTTS-CCCCCGG--GGGCTTCCEEECCSSCCCC-----------------CGGGGGCTTCSEEECCSSCCCCCGG
T ss_pred CCEEECCCC-cCCCChh--hcCCCCCCEEEccCCcCCc-----------------chhhccCCCCCEEEccCCccccchh
Confidence 999999988 7787764 8889999999998887652 2457788889999888776554433
Q ss_pred hhhcccccccceeeEecccCCCcchhhhhhhcccCccCceeecccCC
Q 037222 694 FLSSNKLKSCIRSLFLQLAGDTKSIIDAAAFADLNHLNELYIYEGIE 740 (904)
Q Consensus 694 l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 740 (904)
...+++|+.|+++++.-.. . ..+..+++|+.|++++|..
T Consensus 174 ----l~~l~~L~~L~L~~N~i~~-l---~~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 174 ----LAGLTKLQNLYLSKNHISD-L---RALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp ----GTTCTTCCEEECCSSCCCB-C---GGGTTCTTCSEEEEEEEEE
T ss_pred ----hcCCCccCEEECCCCcCCC-C---hhhccCCCCCEEECcCCcc
Confidence 2224688899998875432 2 2477888999999988753
No 107
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.44 E-value=4.9e-14 Score=154.98 Aligned_cols=259 Identities=14% Similarity=0.049 Sum_probs=154.4
Q ss_pred EeecCcccccccchhhcCCCcccEEEeecCCCcccccC-----ccccccc-cCcEeecccCccccc-chhhhcC-----C
Q 037222 545 FLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLP-----LGMSKLG-SLELFDISRTEIQEL-PEELKLL-----V 612 (904)
Q Consensus 545 ~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp-----~~i~~L~-~L~~L~l~~~~i~~L-p~~~~~L-----~ 612 (904)
.++ .+.+....+.++...++|++|++++| .++ ..+ ..+..++ +|++|++++|.+... +..+..+ +
T Consensus 4 ~ls-~n~~~~~~~~~~~~~~~L~~L~Ls~n-~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 4 KLT-LHPGSNPVEEFTSIPHGVTSLDLSLN-NLY-SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp ECC-CCTTCCHHHHHHTSCTTCCEEECTTS-CGG-GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred ccc-cccchHHHHHHHhCCCCceEEEccCC-CCC-hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 445 34455555565666666888888888 777 444 5566777 788888888887765 4445554 7
Q ss_pred CCcEeeccccccccccchhhh----cCC-CCCceeeecccCCcccccCCCCccccCCCccchHhhcCCCCCcEEEEEecc
Q 037222 613 NLKCLNLRWTSKLIRIPRQLI----SNS-SGLRVLRMFATGYECFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGS 687 (904)
Q Consensus 613 ~L~~L~l~~~~~l~~lp~~~i----~~L-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 687 (904)
+|++|++++| .++..+...+ ..+ ++|++|++.+|.+...... .....+..+
T Consensus 81 ~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~-----------~l~~~l~~~------------ 136 (362)
T 3goz_A 81 NVTSLNLSGN-FLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSS-----------EFKQAFSNL------------ 136 (362)
T ss_dssp TCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH-----------HHHHHHTTS------------
T ss_pred CccEEECcCC-cCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHH-----------HHHHHHHhC------------
Confidence 8888888888 5665543323 334 7888888887765421100 001112221
Q ss_pred hhhHHHhhhcccccccceeeEecccCCCc--chhhhhhhcccC-ccCceeecccCCcceeeeccccccccccCCccc-CC
Q 037222 688 YQALQIFLSSNKLKSCIRSLFLQLAGDTK--SIIDAAAFADLN-HLNELYIYEGIELEELKIDYTEIVRKRREPFVF-RS 763 (904)
Q Consensus 688 ~~~~~~l~~~~~~~~~L~~L~L~~~~~~~--~~~~~~~l~~~~-~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l-~~ 763 (904)
.++|+.|+|++|.-.. ...+...+..++ +|++|++++|.... ..+..+. .....+ ++
T Consensus 137 -------------~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~-~~~~~l~-----~~l~~~~~~ 197 (362)
T 3goz_A 137 -------------PASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS-KNCAELA-----KFLASIPAS 197 (362)
T ss_dssp -------------CTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG-SCHHHHH-----HHHHTSCTT
T ss_pred -------------CCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch-hhHHHHH-----HHHHhCCCC
Confidence 1355556665553221 112223445555 99999999985433 2222211 000134 59
Q ss_pred ccEEeEeccCCCCc-----Ccc-ccc-CCCccEEeEecCccchhhcccCcccCCccccCCCCCCCcccEeeccccc----
Q 037222 764 LHRVTIFSCGKLKD-----VTF-LVF-APNLKSLELLQCDAMEEIISVGEIAETPEMMGHISPFENLQSLHLSYLP---- 832 (904)
Q Consensus 764 L~~L~L~~c~~l~~-----l~~-l~~-l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~---- 832 (904)
|+.|+|++|. +.. ++. +.. .++|++|+|++|. +++.... .+...+..+++|+.|+|++|.
T Consensus 198 L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~-------~l~~~~~~l~~L~~L~L~~n~l~~i 268 (362)
T 3goz_A 198 VTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSLE-------NLKLLKDSLKHLQTVYLDYDIVKNM 268 (362)
T ss_dssp CCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCHH-------HHHHTTTTTTTCSEEEEEHHHHTTC
T ss_pred CCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCCC-CCcHHHH-------HHHHHHhcCCCccEEEeccCCcccc
Confidence 9999999994 554 332 444 4699999999974 3332110 011235678899999999886
Q ss_pred ---ccccccCCCCCCCCcceEeeccCCCCC
Q 037222 833 ---ILRSIYWKPLPFTHLKKMEVRRCDQLR 859 (904)
Q Consensus 833 ---~L~~i~~~~~~~~~L~~L~i~~C~~L~ 859 (904)
.+..+......+++|+.|+++++ ++.
T Consensus 269 ~~~~~~~l~~~~~~l~~L~~LdL~~N-~l~ 297 (362)
T 3goz_A 269 SKEQCKALGAAFPNIQKIILVDKNGK-EIH 297 (362)
T ss_dssp CHHHHHHHHTTSTTCCEEEEECTTSC-BCC
T ss_pred CHHHHHHHHHHhccCCceEEEecCCC-cCC
Confidence 12333334456788999999875 444
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.42 E-value=2e-13 Score=159.08 Aligned_cols=171 Identities=20% Similarity=0.247 Sum_probs=139.5
Q ss_pred ccccccceeEEEeeccccccccCCCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccccccccC
Q 037222 512 AVRESENVTRLSLMQNQIKILSEVPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSL 591 (904)
Q Consensus 512 ~~~~~~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L 591 (904)
.......++.|.+.++.+..++.+..+++|+.|+++ .+.+..+++ +..|++|++|+|++| .+. .+| .++.|++|
T Consensus 38 ~~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls-~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~-~l~-~l~~l~~L 111 (605)
T 1m9s_A 38 TQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLN-GNKLTDIKP--LTNLKNLGWLFLDEN-KIK-DLS-SLKDLKKL 111 (605)
T ss_dssp CHHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECT-TSCCCCCGG--GGGCTTCCEEECCSS-CCC-CCT-TSTTCTTC
T ss_pred chhcCCCCCEEECcCCCCCCChHHccCCCCCEEEee-CCCCCCChh--hccCCCCCEEECcCC-CCC-CCh-hhccCCCC
Confidence 344556899999999999999888999999999999 666888877 899999999999999 998 766 79999999
Q ss_pred cEeecccCcccccchhhhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCCcccccCCCCccccCCCccchHh
Q 037222 592 ELFDISRTEIQELPEELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYECFHEAPEDSVLFGGGEVLVQE 671 (904)
Q Consensus 592 ~~L~l~~~~i~~Lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (904)
++|+|++|.+..+| .+..|++|+.|+|++| .+..++. ++.|++|++|++++|.+.. +..
T Consensus 112 ~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l~~--l~~l~~L~~L~Ls~N~l~~-----------------~~~ 170 (605)
T 1m9s_A 112 KSLSLEHNGISDIN-GLVHLPQLESLYLGNN-KITDITV--LSRLTKLDTLSLEDNQISD-----------------IVP 170 (605)
T ss_dssp CEEECTTSCCCCCG-GGGGCTTCSEEECCSS-CCCCCGG--GGSCTTCSEEECCSSCCCC-----------------CGG
T ss_pred CEEEecCCCCCCCc-cccCCCccCEEECCCC-ccCCchh--hcccCCCCEEECcCCcCCC-----------------chh
Confidence 99999999999885 6899999999999999 7888854 8999999999999987753 112
Q ss_pred hcCCCCCcEEEEEecchhhHHHhhhcccccccceeeEecccC
Q 037222 672 LLGLKYLEVLELTLGSYQALQIFLSSNKLKSCIRSLFLQLAG 713 (904)
Q Consensus 672 l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 713 (904)
+..+++|+.|+++.+....++.+ ..+++|+.|+|++|.
T Consensus 171 l~~l~~L~~L~Ls~N~i~~l~~l----~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 171 LAGLTKLQNLYLSKNHISDLRAL----AGLKNLDVLELFSQE 208 (605)
T ss_dssp GTTCTTCCEEECCSSCCCBCGGG----TTCTTCSEEECCSEE
T ss_pred hccCCCCCEEECcCCCCCCChHH----ccCCCCCEEEccCCc
Confidence 77888888888876655444322 123567777776653
No 109
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.41 E-value=1.3e-12 Score=133.42 Aligned_cols=129 Identities=26% Similarity=0.387 Sum_probs=64.1
Q ss_pred cceeEEEeeccccccccC--CCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCcc-ccccccCcE
Q 037222 517 ENVTRLSLMQNQIKILSE--VPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLG-MSKLGSLEL 593 (904)
Q Consensus 517 ~~~r~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~-i~~L~~L~~ 593 (904)
..++.|.+++|.+..+.. +..+++|+.|+++ ++.+..++...|..+++|++|+|++| .++ .+|.. +..+++|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~-~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~-~l~~~~~~~l~~L~~ 116 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLG-SNQLGALPVGVFDSLTQLTVLDLGTN-QLT-VLPSAVFDRLVHLKE 116 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEEECCSS-CCC-CCCTTTTTTCTTCCE
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECC-CCCCCCcChhhcccCCCcCEEECCCC-cCC-ccChhHhCcchhhCe
Confidence 345555555555544322 2445555555555 33344555444455555555555555 554 33322 345555555
Q ss_pred eecccCcccccchhhhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCC
Q 037222 594 FDISRTEIQELPEELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGY 649 (904)
Q Consensus 594 L~l~~~~i~~Lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~ 649 (904)
|++++|.+..+|..+..+++|++|++++| .++.+|.+.+..+++|++|++.+|.+
T Consensus 117 L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 117 LFMCCNKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp EECCSSCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred EeccCCcccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 55555555555555555555555555555 44555444445555555555554443
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.41 E-value=9.4e-13 Score=133.39 Aligned_cols=148 Identities=16% Similarity=0.244 Sum_probs=110.1
Q ss_pred EEEeeccccccccCCCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccccccccCcEeecccCc
Q 037222 521 RLSLMQNQIKILSEVPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELFDISRTE 600 (904)
Q Consensus 521 ~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~l~~~~ 600 (904)
.+...++.+..+|.. -.++|+.|+++ ++.+..++...|..+++|++|+|++| .++...|..+..+++|++|+|++|.
T Consensus 15 ~v~c~~~~l~~iP~~-l~~~l~~L~l~-~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTN-LPETITEIRLE-QNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp EEECTTSCCSSCCSS-CCTTCCEEECC-SSCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSSC
T ss_pred EEEcCCCCcCcCCCc-cCcCCCEEECC-CCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCCc
Confidence 455666666666542 23678888888 56677787777888888888888888 8873447788888888888888888
Q ss_pred ccccchh-hhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCCcccccCCCCccccCCCccchHhhcCCCCCc
Q 037222 601 IQELPEE-LKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYECFHEAPEDSVLFGGGEVLVQELLGLKYLE 679 (904)
Q Consensus 601 i~~Lp~~-~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 679 (904)
++.+|.. +..+++|++|++++| .++.++...+..+++|++|++.+|.+..+.. ..+..+++|+
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---------------~~~~~l~~L~ 155 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNKLQTIAK---------------GTFSPLRAIQ 155 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCT---------------TTTTTCTTCC
T ss_pred CCccCHhHccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCCcCCEECH---------------HHHhCCCCCC
Confidence 8888876 477888888888888 6777766668888888888888887764321 2255677777
Q ss_pred EEEEEecc
Q 037222 680 VLELTLGS 687 (904)
Q Consensus 680 ~L~l~~~~ 687 (904)
.|++..|.
T Consensus 156 ~L~L~~N~ 163 (220)
T 2v9t_B 156 TMHLAQNP 163 (220)
T ss_dssp EEECCSSC
T ss_pred EEEeCCCC
Confidence 77776543
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.38 E-value=1.9e-12 Score=135.07 Aligned_cols=150 Identities=21% Similarity=0.217 Sum_probs=123.6
Q ss_pred cccccccceeEEEeeccccccccCCCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCcccccccc
Q 037222 511 PAVRESENVTRLSLMQNQIKILSEVPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGS 590 (904)
Q Consensus 511 ~~~~~~~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~ 590 (904)
+.......++.|.+.+|.+..++.+..+++|+.|+++ ++.+..+++ +..+++|++|++++| .++ .+|.... .+
T Consensus 35 ~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~-~N~i~~~~~--l~~l~~L~~L~L~~N-~l~-~l~~~~~--~~ 107 (263)
T 1xeu_A 35 VSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLS-HNQISDLSP--LKDLTKLEELSVNRN-RLK-NLNGIPS--AC 107 (263)
T ss_dssp ECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECC-SSCCCCCGG--GTTCSSCCEEECCSS-CCS-CCTTCCC--SS
T ss_pred cchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECC-CCccCCChh--hccCCCCCEEECCCC-ccC-CcCcccc--Cc
Confidence 3334456889999999988888877889999999999 666888877 889999999999999 888 7775444 89
Q ss_pred CcEeecccCcccccchhhhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCCcccccCCCCccccCCCccchH
Q 037222 591 LELFDISRTEIQELPEELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYECFHEAPEDSVLFGGGEVLVQ 670 (904)
Q Consensus 591 L~~L~l~~~~i~~Lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (904)
|++|++++|.++.+| .+..+++|++|++++| .++.+|. ++.+++|++|++.+|.+... .
T Consensus 108 L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N-~i~~~~~--l~~l~~L~~L~L~~N~i~~~-----------------~ 166 (263)
T 1xeu_A 108 LSRLFLDNNELRDTD-SLIHLKNLEILSIRNN-KLKSIVM--LGFLSKLEVLDLHGNEITNT-----------------G 166 (263)
T ss_dssp CCEEECCSSCCSBSG-GGTTCTTCCEEECTTS-CCCBCGG--GGGCTTCCEEECTTSCCCBC-----------------T
T ss_pred ccEEEccCCccCCCh-hhcCcccccEEECCCC-cCCCChH--HccCCCCCEEECCCCcCcch-----------------H
Confidence 999999999998886 5889999999999998 7888874 88999999999999877631 4
Q ss_pred hhcCCCCCcEEEEEecch
Q 037222 671 ELLGLKYLEVLELTLGSY 688 (904)
Q Consensus 671 ~l~~L~~L~~L~l~~~~~ 688 (904)
.+..+++|+.|+++.+..
T Consensus 167 ~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 167 GLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp TSTTCCCCCEEEEEEEEE
T ss_pred HhccCCCCCEEeCCCCcc
Confidence 467788888888886654
No 112
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.38 E-value=2.2e-12 Score=128.31 Aligned_cols=146 Identities=17% Similarity=0.217 Sum_probs=122.1
Q ss_pred EEEEcCCCcccCcccccccceeEEEeeccccccccCCCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcc
Q 037222 499 FLVCAGAGLEQAPAVRESENVTRLSLMQNQIKILSEVPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFT 578 (904)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~ 578 (904)
.+...+..+..++.......++.|.+.+|.+..++.+..+++|++|+++ .+.+.......|..+++|++|++++| .++
T Consensus 48 ~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~-~n~l~~~~~~~l~~l~~L~~L~Ls~n-~i~ 125 (197)
T 4ezg_A 48 YITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIM-GKDVTSDKIPNLSGLTSLTLLDISHS-AHD 125 (197)
T ss_dssp EEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEE-CTTCBGGGSCCCTTCTTCCEEECCSS-BCB
T ss_pred EEeccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeE-CCccCcccChhhcCCCCCCEEEecCC-ccC
Confidence 3444555666666666678999999999988888888999999999999 55566533344889999999999999 888
Q ss_pred cccCccccccccCcEeecccCc-ccccchhhhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCCc
Q 037222 579 FQLPLGMSKLGSLELFDISRTE-IQELPEELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYE 650 (904)
Q Consensus 579 ~~lp~~i~~L~~L~~L~l~~~~-i~~Lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 650 (904)
...|..++.+++|++|++++|. +..+| .+..+++|++|++++| .++.++. +..+++|++|++.+|.+.
T Consensus 126 ~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~~--l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 126 DSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYRG--IEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp GGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCTT--GGGCSSCCEEEECBC---
T ss_pred cHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChHH--hccCCCCCEEEeeCcccC
Confidence 5678889999999999999997 99998 7999999999999999 7888884 899999999999988764
No 113
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.37 E-value=2.1e-11 Score=135.29 Aligned_cols=288 Identities=14% Similarity=-0.022 Sum_probs=176.9
Q ss_pred ccccchHHHHHHHHHHHhc----CCceEEEEEcCCCCcHHHHHHHHHHhcccC---CCC--CCEEEEEEecCCC-CHHHH
Q 037222 158 RTVVGLQSQLEQVWRCLVE----ESVGIIGLYGMGGVGKTTLLTHINNKFLES---PTN--FDCVIWVVVSKDL-RLEKI 227 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~~--f~~~~wv~vs~~~-~~~~~ 227 (904)
..++||+.+++++.+++.. +..+.+.|+|++|+||||||+.+++..... ... ....+|+.++... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 5789999999999887754 346789999999999999999999875111 011 3457888877766 88888
Q ss_pred HHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEecccccccc---ccc-ccCCCCCCCCCCcEEEEEecchhhh
Q 037222 228 QDDIGKKIGLSDDSWKNKSFEEKAVDILRSLGEKRFVLLLDDLWERVD---LTK-VGVPLPGPQNTTSKVVFATRFIDVC 303 (904)
Q Consensus 228 ~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~---~~~-~~~~l~~~~~~gs~IivTtR~~~v~ 303 (904)
+..++.++..........+.......+...+..++.+|||||++.... .+. +...+. .. .+..||+||+.....
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~-~~-~~~~iI~~t~~~~~~ 177 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLR-SD-ANISVIMISNDINVR 177 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHT-SS-SCEEEEEECSSTTTT
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhc-CC-cceEEEEEECCCchH
Confidence 899888873221111334456677788888887777999999975321 222 211121 22 578899999875321
Q ss_pred ccc-----cC-CceeecccCCHHHHHHHHHHhhCc--cccCCCccHHHHHHHHHHHhC---Cchh-HHHHHHHHH--hc-
Q 037222 304 GSM-----EA-DRKFLVACLSEKDAWELFREKVGE--ETLQSHHDIVELAQIVAKECG---GLPL-ALITIGRAM--AC- 368 (904)
Q Consensus 304 ~~~-----~~-~~~~~l~~L~~~e~~~Lf~~~~~~--~~~~~~~~~~~~~~~i~~~c~---GlPL-ai~~~~~~l--~~- 368 (904)
..+ .. ...+++++++.++..++|...+.. .....+ .+..+.|++.++ |.|. |+..+-.+. +.
T Consensus 178 ~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~ 254 (384)
T 2qby_B 178 DYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRAAQLASG 254 (384)
T ss_dssp TTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTS
T ss_pred hhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcC
Confidence 111 11 238999999999999999988632 111122 244667888887 8887 444433322 21
Q ss_pred --CCCHHHHHHHHHHHhhchhccCCchhhhHhhHhhcccCCCchhhhHHHhHhcCCCCC-cccchHHHHHHHHhcCCccC
Q 037222 369 --KRTAEEWIHAVEVLRRSAFEFAGLGKEVYPLLKFSYDSLQNETIRSCFLYCCLYPED-YGILKWDLIDCWIGEGFLEE 445 (904)
Q Consensus 369 --~~~~~~w~~~~~~l~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~cfl~~~~fp~~-~~i~~~~li~~w~a~g~i~~ 445 (904)
.-+.+.+..+++.... ..+.-++..|++ +.+..+..++. .+. ..+. +.....--..| ..
T Consensus 255 ~~~i~~~~v~~~~~~~~~-------------~~~~~~~~~l~~-~~~~~l~al~~-~~~~~~~~-~~~~~~~~~~g-~~- 316 (384)
T 2qby_B 255 GGIIRKEHVDKAIVDYEQ-------------ERLIEAVKALPF-HYKLALRSLIE-SEDVMSAH-KMYTDLCNKFK-QK- 316 (384)
T ss_dssp SSCCCHHHHHHHHHHHHH-------------HHHHHHHHSSCH-HHHHHHHHHHT-CCBHHHHH-HHHHHHHHHTT-CC-
T ss_pred CCccCHHHHHHHHHHHhc-------------chHHHHHHcCCH-HHHHHHHHHHH-hcccChHH-HHHHHHHHHcC-CC-
Confidence 2366777766554321 234456678887 55655555554 111 1111 01111111122 11
Q ss_pred cchhcHHHHHHHHHHHHHHhcccccc
Q 037222 446 SDRFSAENQGYYIVGTLIHACLLEGI 471 (904)
Q Consensus 446 ~~~~~~~~~~~~~~~~L~~~~ll~~~ 471 (904)
.........+++.|...++++..
T Consensus 317 ---~~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 317 ---PLSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp ---CCCHHHHHHHHHHHHHTTSEEEE
T ss_pred ---CCCHHHHHHHHHHHHhCCCEEEE
Confidence 11234567789999999999763
No 114
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.37 E-value=6.7e-13 Score=142.47 Aligned_cols=129 Identities=19% Similarity=0.088 Sum_probs=64.0
Q ss_pred eeEEEeeccccccc-cC-C--CCCCCceEEEeecCcccccc----cchhhcCCCcccEEEeecCCCcccccCcccccccc
Q 037222 519 VTRLSLMQNQIKIL-SE-V--PTCPDLLTLFLDFNEELEMI----ADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGS 590 (904)
Q Consensus 519 ~r~l~l~~~~~~~l-~~-~--~~~~~L~~L~l~~~~~l~~~----~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~ 590 (904)
+++|++.+|.+... +. . ..+++|++|+++ ++.+... +...+..+++|++|++++| .+....|..++.+++
T Consensus 93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls-~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLR-NVSWATGRSWLAELQQWLKPGLKVLSIAQA-HSPAFSCEQVRAFPA 170 (310)
T ss_dssp CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEE-SCCCSSTTSSHHHHHTTBCSCCCEEEEECC-SSCCCCTTSCCCCTT
T ss_pred eeEEEeeCCEeccchhhhhhhccCCCCCEEEee-cccccchhhhhHHHHhhhccCCCEEEeeCC-CcchhhHHHhccCCC
Confidence 55555555555432 11 1 445566666666 3333321 1122335556666666666 555233345556666
Q ss_pred CcEeecccCcccc---cchh--hhcCCCCcEeeccccccccccchh---hhcCCCCCceeeecccCCc
Q 037222 591 LELFDISRTEIQE---LPEE--LKLLVNLKCLNLRWTSKLIRIPRQ---LISNSSGLRVLRMFATGYE 650 (904)
Q Consensus 591 L~~L~l~~~~i~~---Lp~~--~~~L~~L~~L~l~~~~~l~~lp~~---~i~~L~~L~~L~l~~~~~~ 650 (904)
|++|++++|.+.. +|.. +..+++|++|++++| .++.+|.. .++.+++|++|++++|.+.
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~ 237 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNSLR 237 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCCCC
Confidence 6666666665432 2222 245556666666665 44444431 2345566666666655544
No 115
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.36 E-value=3e-12 Score=129.65 Aligned_cols=146 Identities=27% Similarity=0.368 Sum_probs=124.7
Q ss_pred EEEcCCCcccCcccccccceeEEEeeccccccccC--CCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCc
Q 037222 500 LVCAGAGLEQAPAVRESENVTRLSLMQNQIKILSE--VPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNF 577 (904)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i 577 (904)
+...+..+..+|.. -...++.|.+.+|.+..++. +..+++|+.|+++ ++.+..+++..|.++++|++|+|++| .+
T Consensus 16 v~c~~~~l~~iP~~-l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls-~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l 92 (220)
T 2v9t_B 16 VDCRGKGLTEIPTN-LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLS-NNQISELAPDAFQGLRSLNSLVLYGN-KI 92 (220)
T ss_dssp EECTTSCCSSCCSS-CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECC-SSCCCEECTTTTTTCSSCCEEECCSS-CC
T ss_pred EEcCCCCcCcCCCc-cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECC-CCcCCCcCHHHhhCCcCCCEEECCCC-cC
Confidence 34455566666653 23689999999999988764 5889999999999 66788887777999999999999999 99
Q ss_pred ccccCcc-ccccccCcEeecccCccccc-chhhhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCCc
Q 037222 578 TFQLPLG-MSKLGSLELFDISRTEIQEL-PEELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYE 650 (904)
Q Consensus 578 ~~~lp~~-i~~L~~L~~L~l~~~~i~~L-p~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 650 (904)
+ .+|.. +..+++|++|+|++|.+..+ |..+..+++|++|++++| .++.+|.+.+..+++|++|++.+|.+.
T Consensus 93 ~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 93 T-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp C-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred C-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 9 88766 58899999999999999988 457889999999999999 789998877899999999999988764
No 116
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.35 E-value=2.5e-12 Score=129.14 Aligned_cols=125 Identities=23% Similarity=0.375 Sum_probs=86.1
Q ss_pred EEEeeccccccccCCCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCcc-ccccccCcEeecccC
Q 037222 521 RLSLMQNQIKILSEVPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLG-MSKLGSLELFDISRT 599 (904)
Q Consensus 521 ~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~-i~~L~~L~~L~l~~~ 599 (904)
.+...++.+..++. .-.++|+.|+++ ++.+..++...|..+++|++|+++++ .++ .+|.. +..+++|++|++++|
T Consensus 11 ~v~c~~~~l~~~p~-~~~~~l~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~-~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 11 TVECYSQGRTSVPT-GIPAQTTYLDLE-TNSLKSLPNGVFDELTSLTQLYLGGN-KLQ-SLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp EEECCSSCCSSCCS-CCCTTCSEEECC-SSCCCCCCTTTTTTCTTCSEEECCSS-CCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred EEEecCCCccCCCC-CCCCCCcEEEcC-CCccCcCChhhhcccccCcEEECCCC-ccC-ccChhhcCCCCCcCEEECCCC
Confidence 34444444444442 234577778877 45566777766777788888888887 777 55543 567778888888888
Q ss_pred cccccchh-hhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCCc
Q 037222 600 EIQELPEE-LKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYE 650 (904)
Q Consensus 600 ~i~~Lp~~-~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 650 (904)
.+..+|.. +..+++|++|++++| .++.+|...+.++++|++|++.+|.+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~ 137 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQLK 137 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred cCCccCHhHhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCCccc
Confidence 77777654 467778888888777 667777665677778888888777654
No 117
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.35 E-value=1.4e-11 Score=136.89 Aligned_cols=290 Identities=13% Similarity=0.102 Sum_probs=177.1
Q ss_pred ccccchHHHHHHHHHHHhc----CCceEEEEEcCCCCcHHHHHHHHHHhcccCC----CCCCEEEEEEecCCCCHHHHHH
Q 037222 158 RTVVGLQSQLEQVWRCLVE----ESVGIIGLYGMGGVGKTTLLTHINNKFLESP----TNFDCVIWVVVSKDLRLEKIQD 229 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~~f~~~~wv~vs~~~~~~~~~~ 229 (904)
..++||+.+++++.+++.. ...+.+.|+|++|+||||+|+.+++.. ... ..-...+|+.+....+...++.
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 97 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRL-EARASSLGVLVKPIYVNARHRETPYRVAS 97 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHH-HHHHHHHTCCEEEEEEETTTSCSHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHH-HHHHhccCCCeEEEEEECCcCCCHHHHHH
Confidence 5789999999999998853 456789999999999999999999876 111 1123467888888888899999
Q ss_pred HHHHHhCCCCCCCCCCCHHHHHHHHHHHH--cCCcEEEEeccccccc----ccccc---cCCCCCCC-CCCcEEEEEecc
Q 037222 230 DIGKKIGLSDDSWKNKSFEEKAVDILRSL--GEKRFVLLLDDLWERV----DLTKV---GVPLPGPQ-NTTSKVVFATRF 299 (904)
Q Consensus 230 ~i~~~l~~~~~~~~~~~~~~~~~~l~~~l--~~~r~LlVlDdv~~~~----~~~~~---~~~l~~~~-~~gs~IivTtR~ 299 (904)
.++.+++.... ....+.......+...+ .+++.+|||||++.-. ..+.+ ........ ..+..+|+||+.
T Consensus 98 ~l~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~ 176 (387)
T 2v1u_A 98 AIAEAVGVRVP-FTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNS 176 (387)
T ss_dssp HHHHHHSCCCC-SSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSC
T ss_pred HHHHHhCCCCC-CCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECC
Confidence 99999976432 13344666677777777 3468899999997532 11222 11111001 445678888876
Q ss_pred hhhhccc-----cC--CceeecccCCHHHHHHHHHHhhCc--cccCCCccHHHHHHHHHHHhC---Cchh-HHHHHHHHH
Q 037222 300 IDVCGSM-----EA--DRKFLVACLSEKDAWELFREKVGE--ETLQSHHDIVELAQIVAKECG---GLPL-ALITIGRAM 366 (904)
Q Consensus 300 ~~v~~~~-----~~--~~~~~l~~L~~~e~~~Lf~~~~~~--~~~~~~~~~~~~~~~i~~~c~---GlPL-ai~~~~~~l 366 (904)
......+ .. ...+.+++++.++..+++.+.+.. .....++ +..+.+++.++ |.|- |+..+..+.
T Consensus 177 ~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~~l~~a~ 253 (387)
T 2v1u_A 177 LGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDARRALDLLRVAG 253 (387)
T ss_dssp STTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred CchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 6332111 11 147899999999999999988642 1111222 34567888887 9994 333333222
Q ss_pred h-----cC--CCHHHHHHHHHHHhhchhccCCchhhhHhhHhhcccCCCchhhhHHHhHhc-CCCCCcccchHHHHHHHH
Q 037222 367 A-----CK--RTAEEWIHAVEVLRRSAFEFAGLGKEVYPLLKFSYDSLQNETIRSCFLYCC-LYPEDYGILKWDLIDCWI 438 (904)
Q Consensus 367 ~-----~~--~~~~~w~~~~~~l~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~cfl~~~-~fp~~~~i~~~~li~~w~ 438 (904)
. +. -+.+.+..++..... ..+.-++..|++ +.+..++..+ ++..+-.+....+.+...
T Consensus 254 ~~a~~~~~~~i~~~~v~~a~~~~~~-------------~~~~~~~~~l~~-~~~~~l~a~~~~~~~~~~~~~~~~~~~~~ 319 (387)
T 2v1u_A 254 EIAERRREERVRREHVYSARAEIER-------------DRVSEVVRTLPL-HAKLVLLSIMMLEDGGRPASTGEIYERYK 319 (387)
T ss_dssp HHHHHTTCSCBCHHHHHHHHHHHHH-------------HHHHHHHHSSCH-HHHHHHHHHHHHSSSSCCEEHHHHHHHHH
T ss_pred HHHHHcCCCCcCHHHHHHHHHHHhh-------------chHHHHHHcCCH-HHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Confidence 1 11 255666665544321 234446778887 5555554444 343222444444444331
Q ss_pred h----cCCccCcchhcHHHHHHHHHHHHHHhcccccc
Q 037222 439 G----EGFLEESDRFSAENQGYYIVGTLIHACLLEGI 471 (904)
Q Consensus 439 a----~g~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~ 471 (904)
. .| .. .........+++.|...++++..
T Consensus 320 ~~~~~~~-~~----~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 320 ELTSTLG-LE----HVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHHHHTT-CC----CCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHhcC-CC----CCCHHHHHHHHHHHHhCCCeEEE
Confidence 1 22 11 11235667789999999998863
No 118
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.35 E-value=3.7e-12 Score=129.01 Aligned_cols=148 Identities=19% Similarity=0.283 Sum_probs=105.7
Q ss_pred eEEEeeccccccccCCCCCCCceEEEeecCcccccc-cchhhcCCCcccEEEeecCCCcccccC-ccccccccCcEeecc
Q 037222 520 TRLSLMQNQIKILSEVPTCPDLLTLFLDFNEELEMI-ADGFFQFMPSLKVLKISNCGNFTFQLP-LGMSKLGSLELFDIS 597 (904)
Q Consensus 520 r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~l~~Lr~L~l~~~~~i~~~lp-~~i~~L~~L~~L~l~ 597 (904)
+.++++++.+..+|. .-...++.|+++ ++.+..+ +..+|..+++|++|++++| .++ .+| ..++.+++|++|+++
T Consensus 14 ~~l~~s~n~l~~iP~-~~~~~~~~L~L~-~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~-~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLNKIPE-HIPQYTAELRLN-NNEFTVLEATGIFKKLPQLRKINFSNN-KIT-DIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCSSCCS-CCCTTCSEEECC-SSCCCEECCCCCGGGCTTCCEEECCSS-CCC-EECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcccCcc-CCCCCCCEEEcC-CCcCCccCchhhhccCCCCCEEECCCC-cCC-EECHHHhCCCCCCCEEECC
Confidence 367777777776654 224456788888 5556666 3456788888888888888 787 444 468888888888888
Q ss_pred cCcccccchh-hhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCCcccccCCCCccccCCCccchHhhcCCC
Q 037222 598 RTEIQELPEE-LKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYECFHEAPEDSVLFGGGEVLVQELLGLK 676 (904)
Q Consensus 598 ~~~i~~Lp~~-~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 676 (904)
+|.+..+|.. +..+++|++|++++| .++.++...+..+++|++|++.+|.+.... ...+..++
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---------------~~~~~~l~ 153 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQITTVA---------------PGAFDTLH 153 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTSCCCCBC---------------TTTTTTCT
T ss_pred CCccCccCHhHhcCCcCCCEEECCCC-cCCeECHhHcCCCccCCEEECCCCcCCEEC---------------HHHhcCCC
Confidence 8888877664 678888888888888 677775555788888888888888765421 22356677
Q ss_pred CCcEEEEEecc
Q 037222 677 YLEVLELTLGS 687 (904)
Q Consensus 677 ~L~~L~l~~~~ 687 (904)
+|+.|+++.|.
T Consensus 154 ~L~~L~L~~N~ 164 (220)
T 2v70_A 154 SLSTLNLLANP 164 (220)
T ss_dssp TCCEEECCSCC
T ss_pred CCCEEEecCcC
Confidence 77777776554
No 119
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.34 E-value=3.9e-12 Score=129.73 Aligned_cols=148 Identities=21% Similarity=0.290 Sum_probs=121.5
Q ss_pred eeEEEeeccccccccCCCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCcc-ccccccCcEeecc
Q 037222 519 VTRLSLMQNQIKILSEVPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLG-MSKLGSLELFDIS 597 (904)
Q Consensus 519 ~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~-i~~L~~L~~L~l~ 597 (904)
...++..++.+..+|.. -.++|+.|+++ ++.+..+++..|..+++|++|+|++| .++ .+|.. +..+++|++|+|+
T Consensus 21 ~~~v~c~~~~l~~ip~~-~~~~L~~L~Ls-~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~-~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAG-IPTNAQILYLH-DNQITKLEPGVFDSLINLKELYLGSN-QLG-ALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSCCSSCCSC-CCTTCSEEECC-SSCCCCCCTTTTTTCTTCCEEECCSS-CCC-CCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCCCcCccCCC-CCCCCCEEEcC-CCccCccCHHHhhCccCCcEEECCCC-CCC-CcChhhcccCCCcCEEECC
Confidence 34567777777777653 34899999999 66788887777999999999999999 898 77754 6899999999999
Q ss_pred cCcccccchh-hhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCCcccccCCCCccccCCCccchHhhcCCC
Q 037222 598 RTEIQELPEE-LKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYECFHEAPEDSVLFGGGEVLVQELLGLK 676 (904)
Q Consensus 598 ~~~i~~Lp~~-~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 676 (904)
+|.++.+|.. +..+++|++|++++| .++.+|.. +..+++|++|++.+|.+..+.. ..+..++
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~~~~~---------------~~~~~l~ 159 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCN-KLTELPRG-IERLTHLTHLALDQNQLKSIPH---------------GAFDRLS 159 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSS-CCCSCCTT-GGGCTTCSEEECCSSCCCCCCT---------------TTTTTCT
T ss_pred CCcCCccChhHhCcchhhCeEeccCC-cccccCcc-cccCCCCCEEECCCCcCCccCH---------------HHHhCCC
Confidence 9999999876 588999999999999 78999987 8999999999999998764221 2366778
Q ss_pred CCcEEEEEecc
Q 037222 677 YLEVLELTLGS 687 (904)
Q Consensus 677 ~L~~L~l~~~~ 687 (904)
+|+.|++..|.
T Consensus 160 ~L~~L~l~~N~ 170 (229)
T 3e6j_A 160 SLTHAYLFGNP 170 (229)
T ss_dssp TCCEEECTTSC
T ss_pred CCCEEEeeCCC
Confidence 88888876553
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.34 E-value=5.8e-13 Score=138.95 Aligned_cols=122 Identities=20% Similarity=0.264 Sum_probs=85.2
Q ss_pred ceeEEEeeccccccccCCCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccccccccCcEeecc
Q 037222 518 NVTRLSLMQNQIKILSEVPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELFDIS 597 (904)
Q Consensus 518 ~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~l~ 597 (904)
.+..+.+..+.+..++....+++|+.|+++ ++.+..++. +..+++|++|++++| .++ .+|. ++.+++|++|+++
T Consensus 20 ~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~-~n~i~~l~~--l~~l~~L~~L~L~~N-~i~-~~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLVSQKELSGVQNFNGD-NSNIQSLAG--MQFFTNLKELHLSHN-QIS-DLSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSEECHHHHTTCSEEECT-TSCCCCCTT--GGGCTTCCEEECCSS-CCC-CCGG-GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCcccccchhhcCcCcEEECc-CCCcccchH--HhhCCCCCEEECCCC-ccC-CChh-hccCCCCCEEECC
Confidence 344444555555555555667777888887 445666662 677778888888887 777 6665 7777888888888
Q ss_pred cCcccccchhhhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCCc
Q 037222 598 RTEIQELPEELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYE 650 (904)
Q Consensus 598 ~~~i~~Lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 650 (904)
+|.++.+|.... ++|++|++++| .++.+|. +.++++|++|++.+|.+.
T Consensus 94 ~N~l~~l~~~~~--~~L~~L~L~~N-~l~~~~~--l~~l~~L~~L~Ls~N~i~ 141 (263)
T 1xeu_A 94 RNRLKNLNGIPS--ACLSRLFLDNN-ELRDTDS--LIHLKNLEILSIRNNKLK 141 (263)
T ss_dssp SSCCSCCTTCCC--SSCCEEECCSS-CCSBSGG--GTTCTTCCEEECTTSCCC
T ss_pred CCccCCcCcccc--CcccEEEccCC-ccCCChh--hcCcccccEEECCCCcCC
Confidence 887777765333 77888888777 6677664 777788888888777654
No 121
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.34 E-value=4.1e-12 Score=128.64 Aligned_cols=144 Identities=16% Similarity=0.285 Sum_probs=121.4
Q ss_pred EcCCCcccCcccccccceeEEEeeccccccccC---CCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcc
Q 037222 502 CAGAGLEQAPAVRESENVTRLSLMQNQIKILSE---VPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFT 578 (904)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~ 578 (904)
..+..+..+|.. -...++.|.+++|.+..++. +..+++|+.|+++ ++.+..+++..|.++++|++|+|++| .++
T Consensus 18 ~s~n~l~~iP~~-~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~-~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~ 94 (220)
T 2v70_A 18 CSNQKLNKIPEH-IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFS-NNKITDIEEGAFEGASGVNEILLTSN-RLE 94 (220)
T ss_dssp CCSSCCSSCCSC-CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECC-SSCCCEECTTTTTTCTTCCEEECCSS-CCC
T ss_pred eCCCCcccCccC-CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECC-CCcCCEECHHHhCCCCCCCEEECCCC-ccC
Confidence 344555666542 23467899999999988743 5789999999999 66788898878999999999999999 998
Q ss_pred cccC-ccccccccCcEeecccCccccc-chhhhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCCc
Q 037222 579 FQLP-LGMSKLGSLELFDISRTEIQEL-PEELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYE 650 (904)
Q Consensus 579 ~~lp-~~i~~L~~L~~L~l~~~~i~~L-p~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 650 (904)
.+| ..++.+++|++|++++|.+..+ |..+..+++|++|++++| .++.++...+..+++|++|++.+|.+.
T Consensus 95 -~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 95 -NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp -CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred -ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 555 4589999999999999999988 667899999999999999 788886556999999999999998765
No 122
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.32 E-value=9.2e-12 Score=125.02 Aligned_cols=143 Identities=24% Similarity=0.419 Sum_probs=121.4
Q ss_pred cCCCcccCcccccccceeEEEeeccccccccC--CCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccc
Q 037222 503 AGAGLEQAPAVRESENVTRLSLMQNQIKILSE--VPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQ 580 (904)
Q Consensus 503 ~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~ 580 (904)
.+..+..+|.. ....+++|++.+|.+..++. +..+++|++|+++ ++.+..++...|..+++|++|++++| .++ .
T Consensus 15 ~~~~l~~~p~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~-~ 90 (208)
T 2o6s_A 15 YSQGRTSVPTG-IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLG-GNKLQSLPNGVFNKLTSLTYLNLSTN-QLQ-S 90 (208)
T ss_dssp CSSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECC-SSCCCCCCTTTTTTCTTCCEEECCSS-CCC-C
T ss_pred cCCCccCCCCC-CCCCCcEEEcCCCccCcCChhhhcccccCcEEECC-CCccCccChhhcCCCCCcCEEECCCC-cCC-c
Confidence 34445555532 24589999999999988765 4789999999999 66788999888999999999999999 998 6
Q ss_pred cCcc-ccccccCcEeecccCcccccchh-hhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCCc
Q 037222 581 LPLG-MSKLGSLELFDISRTEIQELPEE-LKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYE 650 (904)
Q Consensus 581 lp~~-i~~L~~L~~L~l~~~~i~~Lp~~-~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 650 (904)
+|.. ++.+++|++|++++|.+..+|.. +..+++|++|++++| .++.+|...+..+++|++|++.+|.+.
T Consensus 91 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 91 LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred cCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCCee
Confidence 6654 68999999999999999998876 689999999999999 788898877899999999999988653
No 123
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.31 E-value=1e-11 Score=143.01 Aligned_cols=38 Identities=5% Similarity=-0.079 Sum_probs=25.9
Q ss_pred CccEEeEeccCCCCcCcc-cccCCCccEEeEecCccchhh
Q 037222 763 SLHRVTIFSCGKLKDVTF-LVFAPNLKSLELLQCDAMEEI 801 (904)
Q Consensus 763 ~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~c~~l~~~ 801 (904)
.|+.|+|++| .++.+|. +..+++|+.|+|++|.....+
T Consensus 208 ~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l~~~~ 246 (571)
T 3cvr_A 208 TEIFFRCREN-RITHIPENILSLDPTCTIILEDNPLSSRI 246 (571)
T ss_dssp CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSSCCHHH
T ss_pred cceEEecCCC-cceecCHHHhcCCCCCEEEeeCCcCCCcC
Confidence 3488888887 4555654 667888888888886544444
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.30 E-value=5e-12 Score=122.20 Aligned_cols=130 Identities=22% Similarity=0.206 Sum_probs=100.8
Q ss_pred cceeEEEeeccccc--cccCC-CCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccccccccCcE
Q 037222 517 ENVTRLSLMQNQIK--ILSEV-PTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLEL 593 (904)
Q Consensus 517 ~~~r~l~l~~~~~~--~l~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~ 593 (904)
..+++|.+.+|.+. .++.. ..+++|+.|+++ ++.+..+ ..|..+++|++|++++| .++..+|..++.+++|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~-~n~l~~~--~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLI-NVGLISV--SNLPKLPKLKKLELSEN-RIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEE-SSCCCCC--SSCCCCSSCCEEEEESC-CCCSCCCHHHHHCTTCCE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCc-CCCCCCh--hhhccCCCCCEEECcCC-cCchHHHHHHhhCCCCCE
Confidence 46888888888877 56654 678888888888 4557666 33788888888888888 787337777777888888
Q ss_pred eecccCcccccc--hhhhcCCCCcEeeccccccccccch---hhhcCCCCCceeeecccCCcc
Q 037222 594 FDISRTEIQELP--EELKLLVNLKCLNLRWTSKLIRIPR---QLISNSSGLRVLRMFATGYEC 651 (904)
Q Consensus 594 L~l~~~~i~~Lp--~~~~~L~~L~~L~l~~~~~l~~lp~---~~i~~L~~L~~L~l~~~~~~~ 651 (904)
|++++|.++.+| ..+..+++|++|++++| .+..+|. ..+..+++|++|++.+|....
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 888888888876 67888888888888888 6777776 457888888888888876653
No 125
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.30 E-value=1.1e-10 Score=129.51 Aligned_cols=291 Identities=13% Similarity=0.060 Sum_probs=178.3
Q ss_pred ccccchHHHHHHHHHHHhc----CCce--EEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHH
Q 037222 158 RTVVGLQSQLEQVWRCLVE----ESVG--IIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDI 231 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~----~~~~--vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 231 (904)
..++||+.+++++.+++.. .... .+.|+|++|+||||||+.+++.. .... -...+|+.++...+...++..+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~-~~~~-~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELY-KDKT-TARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHH-TTSC-CCEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHH-hhhc-CeeEEEEeCccCCCHHHHHHHH
Confidence 5689999999999998875 2334 89999999999999999999887 2211 1356788877878888999999
Q ss_pred HHHhCCCCCCCCCCCHHHHHHHHHHHHc--CCcEEEEecccccc--cccccccCCCCCCCC---CCcEEEEEecchhhhc
Q 037222 232 GKKIGLSDDSWKNKSFEEKAVDILRSLG--EKRFVLLLDDLWER--VDLTKVGVPLPGPQN---TTSKVVFATRFIDVCG 304 (904)
Q Consensus 232 ~~~l~~~~~~~~~~~~~~~~~~l~~~l~--~~r~LlVlDdv~~~--~~~~~~~~~l~~~~~---~gs~IivTtR~~~v~~ 304 (904)
+..++..... ...+.......+...+. +++.+|||||++.. .....+...+..... .+..||++|+......
T Consensus 95 ~~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~ 173 (389)
T 1fnn_A 95 ARSLNIPFPR-RGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLN 173 (389)
T ss_dssp HHHTTCCCCS-SCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHH
T ss_pred HHHhCccCCC-CCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHH
Confidence 9988754321 23355666666666663 66899999999753 223333333320011 4677888888764432
Q ss_pred ccc-------CCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHh---------CCchhHHHHHHHH-Hh
Q 037222 305 SME-------ADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKEC---------GGLPLALITIGRA-MA 367 (904)
Q Consensus 305 ~~~-------~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c---------~GlPLai~~~~~~-l~ 367 (904)
.+. ....+.+.+++.++..+++...+.... ....--.+..+.|++.+ +|.|..+..+... ..
T Consensus 174 ~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~ 252 (389)
T 1fnn_A 174 NLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGL-AEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAY 252 (389)
T ss_dssp TSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHB-CTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHH
T ss_pred HhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhc-CCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHH
Confidence 221 123699999999999999988764211 00111245677899999 7887554443322 21
Q ss_pred -----cC--CCHHHHHHHHHHHhhchhccCCchhhhHhhHhhcccCCCchhhhHHHhHhcCCC---CCcccchHHHHHHH
Q 037222 368 -----CK--RTAEEWIHAVEVLRRSAFEFAGLGKEVYPLLKFSYDSLQNETIRSCFLYCCLYP---EDYGILKWDLIDCW 437 (904)
Q Consensus 368 -----~~--~~~~~w~~~~~~l~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~cfl~~~~fp---~~~~i~~~~li~~w 437 (904)
.. -+.+....+..... ...+.-.+..|+. +.+.++..++.+. .+..+....+...+
T Consensus 253 ~a~~~~~~~i~~~~v~~~~~~~~-------------~~~~~~~l~~l~~-~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~ 318 (389)
T 1fnn_A 253 AAQQNGRKHIAPEDVRKSSKEVL-------------FGISEEVLIGLPL-HEKLFLLAIVRSLKISHTPYITFGDAEESY 318 (389)
T ss_dssp HHHHTTCSSCCHHHHHHHHHHHS-------------CCCCHHHHHHSCH-HHHHHHHHHHHHHHHHCSSCEEHHHHHHHH
T ss_pred HHHHhCCCCcCHHHHHHHHHHHh-------------hhhHHHHHHcCCH-HHHHHHHHHHHHHhhccCCCccHHHHHHHH
Confidence 11 12233333222211 1112223456776 6676666666543 22145556665544
Q ss_pred Hh----cCCccCcchhcHHHHHHHHHHHHHHhcccccc
Q 037222 438 IG----EGFLEESDRFSAENQGYYIVGTLIHACLLEGI 471 (904)
Q Consensus 438 ~a----~g~i~~~~~~~~~~~~~~~~~~L~~~~ll~~~ 471 (904)
-. .|... -.......++++|...+++...
T Consensus 319 ~~~~~~~~~~~-----~~~~~~~~~l~~L~~~gli~~~ 351 (389)
T 1fnn_A 319 KIVCEEYGERP-----RVHSQLWSYLNDLREKGIVETR 351 (389)
T ss_dssp HHHHHHTTCCC-----CCHHHHHHHHHHHHHTTSSEEE
T ss_pred HHHHHHcCCCC-----CCHHHHHHHHHHHHhCCCeEEe
Confidence 32 12111 1124566789999999999763
No 126
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.29 E-value=4.2e-11 Score=132.87 Aligned_cols=291 Identities=12% Similarity=0.094 Sum_probs=170.9
Q ss_pred ccccchHHHHHHHHHHHhc----CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCC-CCEEEEEEecCCCCHHHHHHHHH
Q 037222 158 RTVVGLQSQLEQVWRCLVE----ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTN-FDCVIWVVVSKDLRLEKIQDDIG 232 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~-f~~~~wv~vs~~~~~~~~~~~i~ 232 (904)
..++||+.+++.+.+++.. .....+.|+|++|+||||||+.+++.. ..... -...+|+.+....+...++..++
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~i~ 98 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKL-HKKFLGKFKHVYINTRQIDTPYRVLADLL 98 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHH-HHHTCSSCEEEEEEHHHHCSHHHHHHHHT
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHH-HHHhcCCceEEEEECCCCCCHHHHHHHHH
Confidence 6789999999999998873 456789999999999999999999876 21110 23567888777677888888888
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHHc--CCcEEEEeccccccc------ccccccCCCCCCCCCCcEEEEEecchhhhc
Q 037222 233 KKIGLSDDSWKNKSFEEKAVDILRSLG--EKRFVLLLDDLWERV------DLTKVGVPLPGPQNTTSKVVFATRFIDVCG 304 (904)
Q Consensus 233 ~~l~~~~~~~~~~~~~~~~~~l~~~l~--~~r~LlVlDdv~~~~------~~~~~~~~l~~~~~~gs~IivTtR~~~v~~ 304 (904)
.+++..... ...+.......+...+. +++.+||||+++... .+..+...+......+..+|+||+......
T Consensus 99 ~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~ 177 (386)
T 2qby_A 99 ESLDVKVPF-TGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVD 177 (386)
T ss_dssp TTTSCCCCS-SSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGG
T ss_pred HHhCCCCCC-CCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHh
Confidence 888654321 23345666666666664 458999999997521 122222212100234567788888665432
Q ss_pred ccc-------CCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhC---CchhHHHHH-HHHHh-----c
Q 037222 305 SME-------ADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECG---GLPLALITI-GRAMA-----C 368 (904)
Q Consensus 305 ~~~-------~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~---GlPLai~~~-~~~l~-----~ 368 (904)
.+. ....+++++++.++..+++.+.+.... ....-..+..+.+++.++ |.|..+..+ ..+.. .
T Consensus 178 ~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~ 256 (386)
T 2qby_A 178 LLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAF-KPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMK 256 (386)
T ss_dssp GCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHB-CSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhc-cCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcC
Confidence 221 124799999999999999998653211 011112455667777777 999844333 22221 1
Q ss_pred --CCCHHHHHHHHHHHhhchhccCCchhhhHhhHhhcccCCCchhhhHHHhHhcCCCC-C-cccchHHHHHHH--Hhc--
Q 037222 369 --KRTAEEWIHAVEVLRRSAFEFAGLGKEVYPLLKFSYDSLQNETIRSCFLYCCLYPE-D-YGILKWDLIDCW--IGE-- 440 (904)
Q Consensus 369 --~~~~~~w~~~~~~l~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~cfl~~~~fp~-~-~~i~~~~li~~w--~a~-- 440 (904)
.-+.+.+..++.... ...+.-++..+|. ..+..+..++..-+ + -.+....+.+.. +++
T Consensus 257 ~~~i~~~~v~~a~~~~~-------------~~~~~~~~~~l~~-~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~ 322 (386)
T 2qby_A 257 DTKVKEEYVYMAKEEIE-------------RDRVRDIILTLPF-HSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKL 322 (386)
T ss_dssp CSSCCHHHHHHHHHHHH-------------HHHHHHHHHTSCH-HHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHh-------------hchHHHHHHcCCH-HHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhc
Confidence 124555555544322 1234445667777 45554444442111 1 123333332222 111
Q ss_pred CCccCcchhcHHHHHHHHHHHHHHhccccc
Q 037222 441 GFLEESDRFSAENQGYYIVGTLIHACLLEG 470 (904)
Q Consensus 441 g~i~~~~~~~~~~~~~~~~~~L~~~~ll~~ 470 (904)
| +.+ ........+++.|...+++..
T Consensus 323 g-~~~----~~~~~~~~~l~~L~~~gli~~ 347 (386)
T 2qby_A 323 G-VEA----VTQRRVSDIINELDMVGILTA 347 (386)
T ss_dssp T-CCC----CCHHHHHHHHHHHHHHTSEEE
T ss_pred C-CCC----CCHHHHHHHHHHHHhCCCEEE
Confidence 2 111 112345667888999888865
No 127
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.28 E-value=9.9e-12 Score=136.31 Aligned_cols=143 Identities=22% Similarity=0.328 Sum_probs=91.8
Q ss_pred cCCCcccCcccccccceeEEEeeccccccccCC--C-CCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCccc
Q 037222 503 AGAGLEQAPAVRESENVTRLSLMQNQIKILSEV--P-TCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTF 579 (904)
Q Consensus 503 ~~~~~~~~~~~~~~~~~r~l~l~~~~~~~l~~~--~-~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~ 579 (904)
.+..+..+|.. -...++.|++++|.+..++.. . .+++|+.|+++ ++.+..+++..|.++++|++|+|++| .++
T Consensus 26 ~~~~l~~iP~~-~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~-~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~- 101 (361)
T 2xot_A 26 SKQQLPNVPQS-LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLS-HNHLNFISSEAFVPVPNLRYLDLSSN-HLH- 101 (361)
T ss_dssp CSSCCSSCCSS-CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECC-SSCCCEECTTTTTTCTTCCEEECCSS-CCC-
T ss_pred CCCCcCccCcc-CCCCCCEEECCCCCCCccChhhhhhcccccCEEECC-CCcCCccChhhccCCCCCCEEECCCC-cCC-
Confidence 34445555532 234566777777777665442 3 66777777777 55566666666777777777777777 666
Q ss_pred ccCc-cccccccCcEeecccCccccc-chhhhcCCCCcEeeccccccccccchhhh---cCCCCCceeeecccCCc
Q 037222 580 QLPL-GMSKLGSLELFDISRTEIQEL-PEELKLLVNLKCLNLRWTSKLIRIPRQLI---SNSSGLRVLRMFATGYE 650 (904)
Q Consensus 580 ~lp~-~i~~L~~L~~L~l~~~~i~~L-p~~~~~L~~L~~L~l~~~~~l~~lp~~~i---~~L~~L~~L~l~~~~~~ 650 (904)
.+|. .+..+.+|++|+|++|.|..+ |..+..+++|++|+|++| .++.+|...+ ..+++|++|++.+|.+.
T Consensus 102 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 102 TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 4443 466777777777777777666 445667777777777777 6677776544 45777777777776654
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.26 E-value=7.1e-12 Score=118.40 Aligned_cols=124 Identities=24% Similarity=0.241 Sum_probs=80.9
Q ss_pred cceeEEEeeccccc--cccCC-CCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccccccccCcE
Q 037222 517 ENVTRLSLMQNQIK--ILSEV-PTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLEL 593 (904)
Q Consensus 517 ~~~r~l~l~~~~~~--~l~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~ 593 (904)
..++++++.+|.+. .++.. ..+++|+.|+++ ++.+..+ ..+..+++|++|++++| .++..+|..++.+++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~-~n~l~~~--~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTI-NVGLTSI--ANLPKLNKLKKLELSDN-RVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECT-TSCCCCC--TTCCCCTTCCEEECCSS-CCCSCTHHHHHHCTTCCE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECc-CCCCCCc--hhhhcCCCCCEEECCCC-cccchHHHHhhhCCCCCE
Confidence 35677777777666 44443 566777777777 4455555 33666777777777777 666226666666777777
Q ss_pred eecccCcccccc--hhhhcCCCCcEeeccccccccccch---hhhcCCCCCceeeec
Q 037222 594 FDISRTEIQELP--EELKLLVNLKCLNLRWTSKLIRIPR---QLISNSSGLRVLRMF 645 (904)
Q Consensus 594 L~l~~~~i~~Lp--~~~~~L~~L~~L~l~~~~~l~~lp~---~~i~~L~~L~~L~l~ 645 (904)
|++++|.++.+| ..++.+++|++|++++| .++.+|. ..+..+++|++|+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 777777776654 56677777777777777 5666654 346667777776654
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.26 E-value=6.7e-12 Score=122.26 Aligned_cols=137 Identities=15% Similarity=0.159 Sum_probs=76.6
Q ss_pred CCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccccccccCcEeecccCcccccchhh-hcCCC
Q 037222 535 VPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELFDISRTEIQELPEEL-KLLVN 613 (904)
Q Consensus 535 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~l~~~~i~~Lp~~~-~~L~~ 613 (904)
...+++|+.|+++ ++.+..++. +....++|++|++++| .++ .+ ..++.+++|++|++++|.+..+|..+ ..+++
T Consensus 15 ~~~~~~L~~L~l~-~n~l~~i~~-~~~~~~~L~~L~Ls~N-~l~-~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 15 YTNAVRDRELDLR-GYKIPVIEN-LGATLDQFDAIDFSDN-EIR-KL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EECTTSCEEEECT-TSCCCSCCC-GGGGTTCCSEEECCSS-CCC-EE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred cCCcCCceEEEee-CCCCchhHH-hhhcCCCCCEEECCCC-CCC-cc-cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 3445566666666 334555533 2222336666666666 666 44 45666666666666666666666544 66666
Q ss_pred CcEeeccccccccccch-hhhcCCCCCceeeecccCCcccccCCCCccccCCCccchHhhcCCCCCcEEEEEecchh
Q 037222 614 LKCLNLRWTSKLIRIPR-QLISNSSGLRVLRMFATGYECFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGSYQ 689 (904)
Q Consensus 614 L~~L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 689 (904)
|++|++++| .+..+|. ..+..+++|++|++.+|.+... .......+..+++|+.|+++.+...
T Consensus 90 L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~------------~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 90 LTELILTNN-SLVELGDLDPLASLKSLTYLCILRNPVTNK------------KHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGGGGS------------TTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCCCCCc------------HhHHHHHHHHCCccceeCCCcCCHH
Confidence 666666666 5566654 1256666666666666655421 0111123555666666666655544
No 130
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.25 E-value=1e-11 Score=136.30 Aligned_cols=153 Identities=18% Similarity=0.206 Sum_probs=118.8
Q ss_pred eEEEeeccccccccCCCCCCCceEEEeecCcccccccchhhc-CCCcccEEEeecCCCcccccC-ccccccccCcEeecc
Q 037222 520 TRLSLMQNQIKILSEVPTCPDLLTLFLDFNEELEMIADGFFQ-FMPSLKVLKISNCGNFTFQLP-LGMSKLGSLELFDIS 597 (904)
Q Consensus 520 r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~-~l~~Lr~L~l~~~~~i~~~lp-~~i~~L~~L~~L~l~ 597 (904)
+.++..++.+..+|.. -.+.++.|+++ ++.+..++...|. ++++|++|+|++| .++ .+| ..+..+++|++|+|+
T Consensus 21 ~~l~c~~~~l~~iP~~-~~~~l~~L~Ls-~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~-~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLPNVPQS-LPSYTALLDLS-HNNLSRLRAEWTPTRLTNLHSLLLSHN-HLN-FISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCSSCCSS-CCTTCSEEECC-SSCCCEECTTSSSSCCTTCCEEECCSS-CCC-EECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCccCcc-CCCCCCEEECC-CCCCCccChhhhhhcccccCEEECCCC-cCC-ccChhhccCCCCCCEEECC
Confidence 4677778888777652 34568999999 6678888888787 8999999999999 898 555 568999999999999
Q ss_pred cCcccccch-hhhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCCcccccCCCCccccCCCccchHhhcCCC
Q 037222 598 RTEIQELPE-ELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYECFHEAPEDSVLFGGGEVLVQELLGLK 676 (904)
Q Consensus 598 ~~~i~~Lp~-~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 676 (904)
+|.++.+|. .+..+++|++|+|++| .+..++...+..+++|++|++.+|.+..+... .+..+..++
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~------------~~~~~~~l~ 163 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQNQISRFPVE------------LIKDGNKLP 163 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCSCCGG------------GTC----CT
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCC-cccEECHHHhCCcccCCEEECCCCcCCeeCHH------------HhcCcccCC
Confidence 999998876 4789999999999999 78888766689999999999999987643211 122235677
Q ss_pred CCcEEEEEecchh
Q 037222 677 YLEVLELTLGSYQ 689 (904)
Q Consensus 677 ~L~~L~l~~~~~~ 689 (904)
+|+.|+++.|...
T Consensus 164 ~L~~L~L~~N~l~ 176 (361)
T 2xot_A 164 KLMLLDLSSNKLK 176 (361)
T ss_dssp TCCEEECCSSCCC
T ss_pred cCCEEECCCCCCC
Confidence 8888887765543
No 131
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.24 E-value=2.9e-11 Score=139.18 Aligned_cols=114 Identities=22% Similarity=0.340 Sum_probs=81.8
Q ss_pred ceeEEEeeccccccccCCCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccccccccCcEeecc
Q 037222 518 NVTRLSLMQNQIKILSEVPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELFDIS 597 (904)
Q Consensus 518 ~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~l~ 597 (904)
+++.|++.+|.+..+|... +++|+.|+++ ++.+..+| ..+++|++|++++| .++ .+|. ++. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls-~N~l~~ip----~~l~~L~~L~Ls~N-~l~-~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEIT-QNALISLP----ELPASLEYLDACDN-RLS-TLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECC-SSCCSCCC----CCCTTCCEEECCSS-CCS-CCCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECc-CCCCcccc----cccCCCCEEEccCC-CCC-Ccch-hhc--CCCEEECC
Confidence 5667777777776665522 4678888887 55566776 23677888888888 777 6776 555 78888888
Q ss_pred cCcccccchhhhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCCc
Q 037222 598 RTEIQELPEELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYE 650 (904)
Q Consensus 598 ~~~i~~Lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 650 (904)
+|.++.+|. .+++|++|++++| .++.+|. .+++|++|++.+|.+.
T Consensus 129 ~N~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~----~l~~L~~L~Ls~N~L~ 173 (571)
T 3cvr_A 129 NNQLTMLPE---LPALLEYINADNN-QLTMLPE----LPTSLEVLSVRNNQLT 173 (571)
T ss_dssp SSCCSCCCC---CCTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCCS
T ss_pred CCcCCCCCC---cCccccEEeCCCC-ccCcCCC----cCCCcCEEECCCCCCC
Confidence 888777776 5777888888877 6677775 4677888888777654
No 132
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.23 E-value=2.4e-11 Score=117.30 Aligned_cols=134 Identities=22% Similarity=0.188 Sum_probs=106.6
Q ss_pred CCCCCceEEEeecCcccc--cccchhhcCCCcccEEEeecCCCcccccCccccccccCcEeecccCcccc-cchhhhcCC
Q 037222 536 PTCPDLLTLFLDFNEELE--MIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELFDISRTEIQE-LPEELKLLV 612 (904)
Q Consensus 536 ~~~~~L~~L~l~~~~~l~--~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~l~~~~i~~-Lp~~~~~L~ 612 (904)
...++|+.|+++ ++.+. .+|.. +..+++|++|++++| .++ .+ ..++.+++|++|++++|.+.. +|..+..++
T Consensus 21 ~~~~~L~~L~l~-~n~l~~~~i~~~-~~~l~~L~~L~l~~n-~l~-~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 95 (168)
T 2ell_A 21 RTPAAVRELVLD-NCKSNDGKIEGL-TAEFVNLEFLSLINV-GLI-SV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLP 95 (168)
T ss_dssp SCTTSCSEEECC-SCBCBTTBCSSC-CGGGGGCCEEEEESS-CCC-CC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT
T ss_pred CCcccCCEEECC-CCCCChhhHHHH-HHhCCCCCEEeCcCC-CCC-Ch-hhhccCCCCCEEECcCCcCchHHHHHHhhCC
Confidence 445889999999 55576 67765 788999999999999 888 66 788999999999999999988 787788899
Q ss_pred CCcEeeccccccccccch-hhhcCCCCCceeeecccCCcccccCCCCccccCCCccchHhhcCCCCCcEEEEEecc
Q 037222 613 NLKCLNLRWTSKLIRIPR-QLISNSSGLRVLRMFATGYECFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGS 687 (904)
Q Consensus 613 ~L~~L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 687 (904)
+|++|++++| .++.+|. ..+..+++|++|++.+|.+.... ......+..+++|+.|++..+.
T Consensus 96 ~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~------------~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 96 NLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTNLN------------DYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp TCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTST------------THHHHHHTTCSSCCEETTEETT
T ss_pred CCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcchH------------HHHHHHHHhCccCcEecCCCCC
Confidence 9999999999 7888763 34889999999999998775311 1112346677888877776544
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.22 E-value=1.4e-11 Score=119.90 Aligned_cols=130 Identities=17% Similarity=0.240 Sum_probs=108.6
Q ss_pred cccceeEEEeeccccccccCCCCCC-CceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccc-cccccCc
Q 037222 515 ESENVTRLSLMQNQIKILSEVPTCP-DLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGM-SKLGSLE 592 (904)
Q Consensus 515 ~~~~~r~l~l~~~~~~~l~~~~~~~-~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i-~~L~~L~ 592 (904)
....++.|.+.+|.+..++....+. +|+.|+++ ++.+..++ .|..+++|++|++++| .++ .+|..+ +.+++|+
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls-~N~l~~~~--~l~~l~~L~~L~Ls~N-~l~-~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFS-DNEIRKLD--GFPLLRRLKTLLVNNN-RIC-RIGEGLDQALPDLT 91 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECC-SSCCCEEC--CCCCCSSCCEEECCSS-CCC-EECSCHHHHCTTCC
T ss_pred CcCCceEEEeeCCCCchhHHhhhcCCCCCEEECC-CCCCCccc--ccccCCCCCEEECCCC-ccc-ccCcchhhcCCCCC
Confidence 4457899999999888887665555 99999999 55677773 3888999999999999 898 777665 8999999
Q ss_pred EeecccCcccccch--hhhcCCCCcEeeccccccccccchh---hhcCCCCCceeeecccCCc
Q 037222 593 LFDISRTEIQELPE--ELKLLVNLKCLNLRWTSKLIRIPRQ---LISNSSGLRVLRMFATGYE 650 (904)
Q Consensus 593 ~L~l~~~~i~~Lp~--~~~~L~~L~~L~l~~~~~l~~lp~~---~i~~L~~L~~L~l~~~~~~ 650 (904)
+|++++|.+..+|. .+..+++|++|++++| .+..+|.. ++..+++|+.|++..|...
T Consensus 92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 92 ELILTNNSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EEECCCCcCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 99999999999987 7889999999999999 67788864 5789999999999877554
No 134
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.19 E-value=6.6e-11 Score=116.89 Aligned_cols=125 Identities=19% Similarity=0.279 Sum_probs=95.0
Q ss_pred eEEEeeccccccccCCCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccC-ccccccccCcEeeccc
Q 037222 520 TRLSLMQNQIKILSEVPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLP-LGMSKLGSLELFDISR 598 (904)
Q Consensus 520 r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp-~~i~~L~~L~~L~l~~ 598 (904)
+.+...++.+..+|.. -.++|+.|+++ ++.+..+|. .|.++++|++|+|++| .++ .++ ..+..+++|++|+|++
T Consensus 13 ~~l~~~~~~l~~ip~~-~~~~l~~L~L~-~n~i~~ip~-~~~~l~~L~~L~Ls~N-~i~-~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG-IPRDVTELYLD-GNQFTLVPK-ELSNYKHLTLIDLSNN-RIS-TLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCCEEECC-SSCCCSCCG-GGGGCTTCCEEECCSS-CCC-CCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCCcCCCC-CCCCCCEEECC-CCcCchhHH-HhhcccCCCEEECCCC-cCC-EeCHhHccCCCCCCEEECCC
Confidence 3466666777666542 24678888888 566777774 4788888888888888 887 444 5678888888888888
Q ss_pred Ccccccch-hhhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCCc
Q 037222 599 TEIQELPE-ELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYE 650 (904)
Q Consensus 599 ~~i~~Lp~-~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 650 (904)
|.+..+|. .+..+++|++|++++| .++.+|.+.+..+++|++|++.+|.+.
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CccCEeCHHHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCCee
Confidence 88887765 5778888888888888 778888766788888888888877654
No 135
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.19 E-value=1.9e-10 Score=118.62 Aligned_cols=197 Identities=16% Similarity=0.125 Sum_probs=116.7
Q ss_pred ccccchHHHHHHHHHHHhcCC-ceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhC
Q 037222 158 RTVVGLQSQLEQVWRCLVEES-VGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIG 236 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 236 (904)
..++||+..++.+..++..+. .+.+.|+|++|+||||||+.+++.. .....+.. ........ ...+.....
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~-~~~~~~~~------~~~~~~~~-~~~~~~~~~ 94 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL-NCETGITA------TPCGVCDN-CREIEQGRF 94 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHH-HCTTCSCS------SCCSCSHH-HHHHHTTCC
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh-cCCCCCCC------CCCcccHH-HHHHhccCC
Confidence 468999999999999997653 4588999999999999999999876 22111100 00000000 001110000
Q ss_pred CCCCC--CCCCCHHHHHHHHHHHH-----cCCcEEEEeccccc--ccccccccCCCCCCCCCCcEEEEEecchhhh-c-c
Q 037222 237 LSDDS--WKNKSFEEKAVDILRSL-----GEKRFVLLLDDLWE--RVDLTKVGVPLPGPQNTTSKVVFATRFIDVC-G-S 305 (904)
Q Consensus 237 ~~~~~--~~~~~~~~~~~~l~~~l-----~~~r~LlVlDdv~~--~~~~~~~~~~l~~~~~~gs~IivTtR~~~v~-~-~ 305 (904)
...-. ............+.+.+ .+++.+||+||++. ...+..+...+. ....+..+|+||+..... . .
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~-~~~~~~~~i~~t~~~~~~~~~l 173 (250)
T 1njg_A 95 VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLE-EPPEHVKFLLATTDPQKLPVTI 173 (250)
T ss_dssp SSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHH-SCCTTEEEEEEESCGGGSCHHH
T ss_pred cceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHh-cCCCceEEEEEeCChHhCCHHH
Confidence 00000 00001111122222222 35689999999965 234555544443 334577888888765421 1 1
Q ss_pred ccCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHHHHHHHHH
Q 037222 306 MEADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLALITIGRAM 366 (904)
Q Consensus 306 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l 366 (904)
......+++++++.++..+++.+.+....... -.+..+.|++.|+|.|..+..+...+
T Consensus 174 ~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 174 LSRCLQFHLKALDVEQIRHQLEHILNEEHIAH---EPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHHTTCCB---CHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhhhccCCCCCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 22346889999999999999998875332111 13567789999999999988776543
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.19 E-value=7.7e-11 Score=114.82 Aligned_cols=126 Identities=21% Similarity=0.365 Sum_probs=105.0
Q ss_pred eEEEeeccccccccCCCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCcc-ccccccCcEeeccc
Q 037222 520 TRLSLMQNQIKILSEVPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLG-MSKLGSLELFDISR 598 (904)
Q Consensus 520 r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~-i~~L~~L~~L~l~~ 598 (904)
+.+...++.+..+|. .-.++|+.|+++ ++.+..++...|..+++|++|++++| .++ .+|.. ++.+++|++|++++
T Consensus 10 ~~l~~~~~~l~~~p~-~~~~~l~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~-~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPT-GIPSSATRLELE-SNKLQSLPHGVFDKLTQLTKLSLSQN-QIQ-SLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TEEECCSSCCSSCCT-TCCTTCSEEECC-SSCCCCCCTTTTTTCTTCSEEECCSS-CCC-CCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCCccCCC-CCCCCCcEEEeC-CCcccEeCHHHhcCcccccEEECCCC-cce-EeChhHccCCCccCEEECCC
Confidence 456677777776653 334789999999 56688888887899999999999999 898 66654 68999999999999
Q ss_pred Ccccccchh-hhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCCc
Q 037222 599 TEIQELPEE-LKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYE 650 (904)
Q Consensus 599 ~~i~~Lp~~-~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 650 (904)
|.++.+|.. +..+++|++|++++| .++.+|...+..+++|++|++.+|.+.
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCee
Confidence 999988875 588999999999999 788999876788999999999988664
No 137
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.19 E-value=2e-11 Score=115.22 Aligned_cols=130 Identities=21% Similarity=0.248 Sum_probs=102.6
Q ss_pred CCCCCceEEEeecCcccc--cccchhhcCCCcccEEEeecCCCcccccCccccccccCcEeecccCcccc-cchhhhcCC
Q 037222 536 PTCPDLLTLFLDFNEELE--MIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELFDISRTEIQE-LPEELKLLV 612 (904)
Q Consensus 536 ~~~~~L~~L~l~~~~~l~--~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~l~~~~i~~-Lp~~~~~L~ 612 (904)
...++|+.|+++ ++.+. .+|. .+..+++|++|++++| .++ .+ ..++.+++|++|++++|.+.. +|..+..++
T Consensus 14 ~~~~~l~~L~l~-~n~l~~~~~~~-~~~~l~~L~~L~l~~n-~l~-~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 88 (149)
T 2je0_A 14 RTPSDVKELVLD-NSRSNEGKLEG-LTDEFEELEFLSTINV-GLT-SI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP 88 (149)
T ss_dssp CCGGGCSEEECT-TCBCBTTBCCS-CCTTCTTCCEEECTTS-CCC-CC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT
T ss_pred CCCccCeEEEcc-CCcCChhHHHH-HHhhcCCCcEEECcCC-CCC-Cc-hhhhcCCCCCEEECCCCcccchHHHHhhhCC
Confidence 345789999999 45566 6766 4789999999999999 888 66 788999999999999999988 888888899
Q ss_pred CCcEeeccccccccccch-hhhcCCCCCceeeecccCCcccccCCCCccccCCCccchHhhcCCCCCcEEEE
Q 037222 613 NLKCLNLRWTSKLIRIPR-QLISNSSGLRVLRMFATGYECFHEAPEDSVLFGGGEVLVQELLGLKYLEVLEL 683 (904)
Q Consensus 613 ~L~~L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l 683 (904)
+|++|++++| .++.+|. ..++.+++|++|++.+|.+.... ......+..+++|+.|++
T Consensus 89 ~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~------------~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 89 NLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCEVTNLN------------DYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp TCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTCGGGGST------------THHHHHHHHCTTCCEETT
T ss_pred CCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCCcccchH------------HHHHHHHHHCCCcccccC
Confidence 9999999999 6888752 34899999999999998775311 111134666777777654
No 138
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.19 E-value=4.8e-11 Score=117.92 Aligned_cols=127 Identities=18% Similarity=0.242 Sum_probs=103.2
Q ss_pred eEEEeeccccccccCCCCCCCceEEEeecCcccccccch-hhcCCCcccEEEeecCCCcccccCccccccccCcEeeccc
Q 037222 520 TRLSLMQNQIKILSEVPTCPDLLTLFLDFNEELEMIADG-FFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELFDISR 598 (904)
Q Consensus 520 r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~l~~ 598 (904)
+.+.++++.+..+|.. -..+|+.|+++ ++.+..++.. +|..+++|++|+|++| .+++..|..++.+++|++|++++
T Consensus 11 ~~l~~s~~~l~~ip~~-~~~~l~~L~l~-~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRD-IPLHTTELLLN-DNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCSEEECC-SCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccC-CCCCCCEEECC-CCcCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCC
Confidence 5677778887777652 23489999999 5667777763 5889999999999999 88844578899999999999999
Q ss_pred Ccccccchh-hhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCCc
Q 037222 599 TEIQELPEE-LKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYE 650 (904)
Q Consensus 599 ~~i~~Lp~~-~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 650 (904)
|.++.+|.. +..+++|++|++++| .++.++...+..+++|++|++.+|.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 999888765 788999999999999 677775555889999999999988765
No 139
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.16 E-value=8.4e-11 Score=116.13 Aligned_cols=124 Identities=22% Similarity=0.332 Sum_probs=104.7
Q ss_pred eEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccccccccCcEeecccCcccccch-hhhcCCCCcEeecc
Q 037222 542 LTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELFDISRTEIQELPE-ELKLLVNLKCLNLR 620 (904)
Q Consensus 542 ~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~l~~~~i~~Lp~-~~~~L~~L~~L~l~ 620 (904)
++++++ ++.+..+|..+ .++|++|+++++ .++ .+|..+..+++|++|++++|.|+.++. .+..+++|++|+++
T Consensus 13 ~~l~~~-~~~l~~ip~~~---~~~l~~L~L~~n-~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 13 TVVRCS-NKGLKVLPKGI---PRDVTELYLDGN-QFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86 (193)
T ss_dssp TEEECT-TSCCSSCCSCC---CTTCCEEECCSS-CCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEcC-CCCCCcCCCCC---CCCCCEEECCCC-cCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC
Confidence 567888 66788898764 368999999999 999 999999999999999999999999875 58999999999999
Q ss_pred ccccccccchhhhcCCCCCceeeecccCCcccccCCCCccccCCCccchHhhcCCCCCcEEEEEecc
Q 037222 621 WTSKLIRIPRQLISNSSGLRVLRMFATGYECFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGS 687 (904)
Q Consensus 621 ~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 687 (904)
+| .++.+|...+..+++|++|++.+|.+..+.. ..+..+++|+.|++..|.
T Consensus 87 ~N-~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~---------------~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 87 YN-RLRCIPPRTFDGLKSLRLLSLHGNDISVVPE---------------GAFNDLSALSHLAIGANP 137 (193)
T ss_dssp SS-CCCBCCTTTTTTCTTCCEEECCSSCCCBCCT---------------TTTTTCTTCCEEECCSSC
T ss_pred CC-ccCEeCHHHhCCCCCCCEEECCCCCCCeeCh---------------hhhhcCccccEEEeCCCC
Confidence 99 7899988779999999999999998764322 125677888888877554
No 140
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.14 E-value=1.7e-11 Score=146.63 Aligned_cols=152 Identities=18% Similarity=0.219 Sum_probs=82.8
Q ss_pred cceeEEEeeccccccccC-CCCCCCceEEEeec----CcccccccchhhcCCCcccEEEeecCCCcccccCccccccccC
Q 037222 517 ENVTRLSLMQNQIKILSE-VPTCPDLLTLFLDF----NEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSL 591 (904)
Q Consensus 517 ~~~r~l~l~~~~~~~l~~-~~~~~~L~~L~l~~----~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L 591 (904)
..++++++..+.+...+. ......|+.+.+.. ++.+. +++..|..++.|++|+|++| .+. .+|..+..+.+|
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n-~l~-~l~~~~~~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNL-QIF-NISANIFKYDFL 249 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTS-CCS-CCCGGGGGCCSC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCC-CCC-CCChhhcCCCCC
Confidence 356777776666554322 12223333333221 22232 44555777888888888888 777 788888888888
Q ss_pred cEeecccCcccccchhhhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCCcccccCCCCccccCCCccchHh
Q 037222 592 ELFDISRTEIQELPEELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYECFHEAPEDSVLFGGGEVLVQE 671 (904)
Q Consensus 592 ~~L~l~~~~i~~Lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (904)
++|+|++|.|..+|..+++|++|++|+|++| .++.+|.. |++|++|++|++.+|.+..+ ...
T Consensus 250 ~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~~l----------------p~~ 311 (727)
T 4b8c_D 250 TRLYLNGNSLTELPAEIKNLSNLRVLDLSHN-RLTSLPAE-LGSCFQLKYFYFFDNMVTTL----------------PWE 311 (727)
T ss_dssp SCCBCTTSCCSCCCGGGGGGTTCCEEECTTS-CCSSCCSS-GGGGTTCSEEECCSSCCCCC----------------CSS
T ss_pred CEEEeeCCcCcccChhhhCCCCCCEEeCcCC-cCCccChh-hcCCCCCCEEECCCCCCCcc----------------Chh
Confidence 8888888888888888888888888888888 67788776 78888888888887766421 123
Q ss_pred hcCCCCCcEEEEEecchh
Q 037222 672 LLGLKYLEVLELTLGSYQ 689 (904)
Q Consensus 672 l~~L~~L~~L~l~~~~~~ 689 (904)
+..|++|+.|+++.|...
T Consensus 312 ~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 312 FGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp TTSCTTCCCEECTTSCCC
T ss_pred hhcCCCccEEeCCCCccC
Confidence 667778888887766543
No 141
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.11 E-value=5.9e-10 Score=113.03 Aligned_cols=183 Identities=11% Similarity=0.094 Sum_probs=115.3
Q ss_pred ccccchHHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCC-EEEEEEecCCCCHHHHHHHHHHHhC
Q 037222 158 RTVVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFD-CVIWVVVSKDLRLEKIQDDIGKKIG 236 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~vs~~~~~~~~~~~i~~~l~ 236 (904)
..++|++..++++.+++.....+.+.|+|++|+||||+|+.+++.. .. ..+. ..+.+..+.......+...+.....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL-FG-ENWRDNFIEMNASDERGIDVVRHKIKEFAR 94 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHH-HG-GGGGGGEEEEETTCTTCHHHHHHHHHHHHT
T ss_pred HHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH-hc-cccccceEEeccccccChHHHHHHHHHHhc
Confidence 4689999999999999987655569999999999999999999875 11 1121 2334444333333322222211111
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHcCCcEEEEecccccc--cccccccCCCCCCCCCCcEEEEEecchhhh--ccccCCcee
Q 037222 237 LSDDSWKNKSFEEKAVDILRSLGEKRFVLLLDDLWER--VDLTKVGVPLPGPQNTTSKVVFATRFIDVC--GSMEADRKF 312 (904)
Q Consensus 237 ~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~IivTtR~~~v~--~~~~~~~~~ 312 (904)
... .-.+++.+||+||++.. ..+..+...+. ....+.++|+||+..... ........+
T Consensus 95 ~~~-----------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~-~~~~~~~~i~~~~~~~~~~~~l~~r~~~i 156 (226)
T 2chg_A 95 TAP-----------------IGGAPFKIIFLDEADALTADAQAALRRTME-MYSKSCRFILSCNYVSRIIEPIQSRCAVF 156 (226)
T ss_dssp SCC-----------------STTCSCEEEEEETGGGSCHHHHHHHHHHHH-HTTTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred ccC-----------------CCccCceEEEEeChhhcCHHHHHHHHHHHH-hcCCCCeEEEEeCChhhcCHHHHHhCcee
Confidence 100 01257889999999753 22334433333 334567888888865321 111233488
Q ss_pred ecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHHHHHH
Q 037222 313 LVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLALITIG 363 (904)
Q Consensus 313 ~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 363 (904)
.+.+++.++..+++.+.+....... -.+..+.+++.++|.|..+..+.
T Consensus 157 ~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 157 RFKPVPKEAMKKRLLEICEKEGVKI---TEDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHTCCB---CHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 9999999999999998774322111 13566788999999998655443
No 142
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.11 E-value=1.5e-10 Score=133.97 Aligned_cols=104 Identities=18% Similarity=0.275 Sum_probs=81.9
Q ss_pred CceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccccccccCcEeecccCcccccchhhhcCCCCcEeec
Q 037222 540 DLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELFDISRTEIQELPEELKLLVNLKCLNL 619 (904)
Q Consensus 540 ~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~l~~~~i~~Lp~~~~~L~~L~~L~l 619 (904)
.|++|+++ ++.+..+|. |+.+++|++|+|++| .++ .+|..++.|++|++|+|++|.++.+| .++.|++|++|+|
T Consensus 442 ~L~~L~Ls-~n~l~~lp~--~~~l~~L~~L~Ls~N-~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 442 DVRVLHLA-HKDLTVLCH--LEQLLLVTHLDLSHN-RLR-ALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLL 515 (567)
T ss_dssp TCSEEECT-TSCCSSCCC--GGGGTTCCEEECCSS-CCC-CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEEC
T ss_pred CceEEEec-CCCCCCCcC--ccccccCcEeecCcc-ccc-ccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEEC
Confidence 37777777 556777765 778888888888888 888 88888888888888888888888887 7888888888888
Q ss_pred ccccccccc--chhhhcCCCCCceeeecccCCcc
Q 037222 620 RWTSKLIRI--PRQLISNSSGLRVLRMFATGYEC 651 (904)
Q Consensus 620 ~~~~~l~~l--p~~~i~~L~~L~~L~l~~~~~~~ 651 (904)
++| .++.+ |.. +++|++|+.|++.+|.+..
T Consensus 516 s~N-~l~~~~~p~~-l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 516 CNN-RLQQSAAIQP-LVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp CSS-CCCSSSTTGG-GGGCTTCCEEECTTSGGGG
T ss_pred CCC-CCCCCCCcHH-HhcCCCCCEEEecCCcCCC
Confidence 888 67777 554 7888888888888877653
No 143
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.10 E-value=1.2e-10 Score=115.01 Aligned_cols=124 Identities=15% Similarity=0.245 Sum_probs=102.7
Q ss_pred eEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCcc--ccccccCcEeecccCccccc-chhhhcCCCCcEee
Q 037222 542 LTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLG--MSKLGSLELFDISRTEIQEL-PEELKLLVNLKCLN 618 (904)
Q Consensus 542 ~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~--i~~L~~L~~L~l~~~~i~~L-p~~~~~L~~L~~L~ 618 (904)
++++++ ++.+..+|..++ .+|++|+++++ .++ .+|.. ++.+++|++|++++|.++.+ |..+..+++|++|+
T Consensus 11 ~~l~~s-~~~l~~ip~~~~---~~l~~L~l~~n-~i~-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 84 (192)
T 1w8a_A 11 TTVDCT-GRGLKEIPRDIP---LHTTELLLNDN-ELG-RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ 84 (192)
T ss_dssp TEEECT-TSCCSSCCSCCC---TTCSEEECCSC-CCC-SBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CEEEcC-CCCcCcCccCCC---CCCCEEECCCC-cCC-ccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEE
Confidence 788898 667888987643 38999999999 998 77653 89999999999999999988 67899999999999
Q ss_pred ccccccccccchhhhcCCCCCceeeecccCCcccccCCCCccccCCCccchHhhcCCCCCcEEEEEecc
Q 037222 619 LRWTSKLIRIPRQLISNSSGLRVLRMFATGYECFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGS 687 (904)
Q Consensus 619 l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 687 (904)
+++| .++.++...+.++++|++|++.+|.+.... ...+..+++|+.|+++.|.
T Consensus 85 Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---------------~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 85 LGEN-KIKEISNKMFLGLHQLKTLNLYDNQISCVM---------------PGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCSC-CCCEECSSSSTTCTTCCEEECCSSCCCEEC---------------TTSSTTCTTCCEEECTTCC
T ss_pred CCCC-cCCccCHHHhcCCCCCCEEECCCCcCCeeC---------------HHHhhcCCCCCEEEeCCCC
Confidence 9999 788888766899999999999999876422 2336677888888876554
No 144
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.09 E-value=8.8e-11 Score=140.40 Aligned_cols=111 Identities=23% Similarity=0.261 Sum_probs=84.9
Q ss_pred CCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccccccccCcEeecccCcccccchhhhcCCCC
Q 037222 535 VPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELFDISRTEIQELPEELKLLVNL 614 (904)
Q Consensus 535 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~l~~~~i~~Lp~~~~~L~~L 614 (904)
+..+++|+.|+++ ++.+..+|..++ ++++|++|+|++| .++ .+|..+++|++|++|+|++|.|+.+|..++.|++|
T Consensus 220 ~~~l~~L~~L~Ls-~n~l~~l~~~~~-~l~~L~~L~Ls~N-~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L 295 (727)
T 4b8c_D 220 KYDDQLWHALDLS-NLQIFNISANIF-KYDFLTRLYLNGN-SLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQL 295 (727)
T ss_dssp --CCCCCCEEECT-TSCCSCCCGGGG-GCCSCSCCBCTTS-CCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTC
T ss_pred hccCCCCcEEECC-CCCCCCCChhhc-CCCCCCEEEeeCC-cCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCC
Confidence 3567778888888 555667777644 6788888888888 787 78888888888888888888888888888888888
Q ss_pred cEeeccccccccccchhhhcCCCCCceeeecccCCcc
Q 037222 615 KCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYEC 651 (904)
Q Consensus 615 ~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~ 651 (904)
++|+|++| .++.+|.+ |++|++|++|++.+|.+..
T Consensus 296 ~~L~L~~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 296 KYFYFFDN-MVTTLPWE-FGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp SEEECCSS-CCCCCCSS-TTSCTTCCCEECTTSCCCS
T ss_pred CEEECCCC-CCCccChh-hhcCCCccEEeCCCCccCC
Confidence 88888877 67778876 7788888888888777653
No 145
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.06 E-value=3.3e-11 Score=119.85 Aligned_cols=116 Identities=20% Similarity=0.249 Sum_probs=86.9
Q ss_pred cccccchhhcCCCcccEEEeecCCCcccccCccccccccCcEeecccCcccccchhhhcCCCCcEeeccccccccccchh
Q 037222 552 LEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELFDISRTEIQELPEELKLLVNLKCLNLRWTSKLIRIPRQ 631 (904)
Q Consensus 552 l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~l~~~~i~~Lp~~~~~L~~L~~L~l~~~~~l~~lp~~ 631 (904)
++.+|.. |..+++|++|++++| .++ .+| .++.+++|++|++++|.+..+|..+..+++|++|++++| .++.+|.
T Consensus 37 l~~l~~~-~~~l~~L~~L~ls~n-~l~-~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~~- 110 (198)
T 1ds9_A 37 IEKMDAT-LSTLKACKHLALSTN-NIE-KIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLSG- 110 (198)
T ss_dssp CCCCHHH-HHHTTTCSEEECSEE-EES-CCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-ECCCHHH-
T ss_pred HhhhhHH-HhcCCCCCEEECCCC-CCc-ccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC-cCCcCCc-
Confidence 4555553 777888888888888 787 677 788888888888888888888887777788888888888 6777773
Q ss_pred hhcCCCCCceeeecccCCcccccCCCCccccCCCccchHhhcCCCCCcEEEEEecch
Q 037222 632 LISNSSGLRVLRMFATGYECFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGSY 688 (904)
Q Consensus 632 ~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 688 (904)
+.++++|++|++.+|.+.. ...+..+..+++|+.|++..+..
T Consensus 111 -~~~l~~L~~L~l~~N~i~~--------------~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 111 -IEKLVNLRVLYMSNNKITN--------------WGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp -HHHHHHSSEEEESEEECCC--------------HHHHHHHTTTTTCSEEEECSCHH
T ss_pred -cccCCCCCEEECCCCcCCc--------------hhHHHHHhcCCCCCEEEecCCcc
Confidence 7788888888888876652 12234577778888888776554
No 146
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.05 E-value=2.6e-10 Score=131.92 Aligned_cols=121 Identities=18% Similarity=0.220 Sum_probs=107.4
Q ss_pred ceeEEEeeccccccccCCCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccccccccCcEeecc
Q 037222 518 NVTRLSLMQNQIKILSEVPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELFDIS 597 (904)
Q Consensus 518 ~~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~l~ 597 (904)
.++.|++++|.+..+|.+..+++|+.|+++ ++.+..+|.. |+++++|++|+|++| .++ .+| .++.|++|++|+|+
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls-~N~l~~lp~~-~~~l~~L~~L~Ls~N-~l~-~lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLS-HNRLRALPPA-LAALRCLEVLQASDN-ALE-NVD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGTTCCEEECC-SSCCCCCCGG-GGGCTTCCEEECCSS-CCC-CCG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCCCcCccccccCcEeecC-cccccccchh-hhcCCCCCEEECCCC-CCC-CCc-ccCCCCCCcEEECC
Confidence 478899999999999888999999999999 6678889876 899999999999999 999 788 89999999999999
Q ss_pred cCccccc--chhhhcCCCCcEeeccccccccccchh---hhcCCCCCceeee
Q 037222 598 RTEIQEL--PEELKLLVNLKCLNLRWTSKLIRIPRQ---LISNSSGLRVLRM 644 (904)
Q Consensus 598 ~~~i~~L--p~~~~~L~~L~~L~l~~~~~l~~lp~~---~i~~L~~L~~L~l 644 (904)
+|.++.+ |..++.|++|++|++++| .++.+|.. .+..+++|+.|++
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccCC
Confidence 9999998 899999999999999999 67777652 2345888888863
No 147
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.03 E-value=1.7e-11 Score=121.99 Aligned_cols=125 Identities=19% Similarity=0.198 Sum_probs=103.4
Q ss_pred eeEEEeecc--cccccc-CCCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccccccccCcEee
Q 037222 519 VTRLSLMQN--QIKILS-EVPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELFD 595 (904)
Q Consensus 519 ~r~l~l~~~--~~~~l~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~ 595 (904)
++...+.+. .+..++ .+..+++|++|+++ ++.+..+| .+..+++|++|++++| .++ .+|..++.+++|++|+
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls-~n~l~~l~--~~~~l~~L~~L~l~~n-~l~-~l~~~~~~~~~L~~L~ 99 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALS-TNNIEKIS--SLSGMENLRILSLGRN-LIK-KIENLDAVADTLEELW 99 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECS-EEEESCCC--CHHHHTTCCEEEEEEE-EEC-SCSSHHHHHHHCSEEE
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECC-CCCCcccc--ccccCCCCCEEECCCC-Ccc-cccchhhcCCcCCEEE
Confidence 444444433 333333 24678999999999 56688888 4889999999999999 999 9999888999999999
Q ss_pred cccCcccccchhhhcCCCCcEeeccccccccccch-hhhcCCCCCceeeecccCCc
Q 037222 596 ISRTEIQELPEELKLLVNLKCLNLRWTSKLIRIPR-QLISNSSGLRVLRMFATGYE 650 (904)
Q Consensus 596 l~~~~i~~Lp~~~~~L~~L~~L~l~~~~~l~~lp~-~~i~~L~~L~~L~l~~~~~~ 650 (904)
+++|.+..+| .+..+++|++|++++| .++.+|. ..+..+++|++|++.+|.+.
T Consensus 100 L~~N~l~~l~-~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 100 ISYNQIASLS-GIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp EEEEECCCHH-HHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred CcCCcCCcCC-ccccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 9999999988 6899999999999999 7888775 34889999999999988764
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.00 E-value=7.6e-10 Score=107.15 Aligned_cols=103 Identities=19% Similarity=0.262 Sum_probs=80.4
Q ss_pred eEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccccccccCcEeecccCcccccchhh-hcCCCCcEeecc
Q 037222 542 LTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELFDISRTEIQELPEEL-KLLVNLKCLNLR 620 (904)
Q Consensus 542 ~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~l~~~~i~~Lp~~~-~~L~~L~~L~l~ 620 (904)
+.++++ ++.+..+|..+ .++|++|+|++| .++...|..++.+++|++|+|++|.++.+|..+ ..+++|++|+|+
T Consensus 15 ~~l~~~-~n~l~~iP~~~---~~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 15 TLVNCQ-NIRLASVPAGI---PTDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SEEECC-SSCCSSCCSCC---CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cEEEeC-CCCCCccCCCc---CCCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 567777 55677777753 277888888888 887333667888888888888888888888764 788888888888
Q ss_pred ccccccccchhhhcCCCCCceeeecccCCc
Q 037222 621 WTSKLIRIPRQLISNSSGLRVLRMFATGYE 650 (904)
Q Consensus 621 ~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 650 (904)
+| .++.+|.+.+..+++|++|++.+|.+.
T Consensus 90 ~N-~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 90 DN-HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SS-CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CC-ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 88 778888766888888888888887664
No 149
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.99 E-value=8.9e-09 Score=110.97 Aligned_cols=272 Identities=14% Similarity=0.077 Sum_probs=143.6
Q ss_pred ccccchHHHHHHHHHHHhc-----CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHH
Q 037222 158 RTVVGLQSQLEQVWRCLVE-----ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIG 232 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 232 (904)
..++|++..+..+..++.. .....+.|+|++|+||||+|+.+++.. ... .+++..+......++...+.
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~---~~~---~~~~~~~~~~~~~~l~~~l~ 85 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL---GVN---LRVTSGPAIEKPGDLAAILA 85 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH---TCC---EEEECTTTCCSHHHHHHHHT
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh---CCC---EEEEeccccCChHHHHHHHH
Confidence 4689999999988888753 234678899999999999999999876 222 23443332222222211110
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEeccccccc--ccccccCCCC-------CC----------CCCCcEE
Q 037222 233 KKIGLSDDSWKNKSFEEKAVDILRSLGEKRFVLLLDDLWERV--DLTKVGVPLP-------GP----------QNTTSKV 293 (904)
Q Consensus 233 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~--~~~~~~~~l~-------~~----------~~~gs~I 293 (904)
.. ..++.+|+|||+.... ....+...+. .. ...+..+
T Consensus 86 -----------------------~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~ 141 (324)
T 1hqc_A 86 -----------------------NS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTL 141 (324)
T ss_dssp -----------------------TT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEE
T ss_pred -----------------------Hh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEE
Confidence 00 1245577888886421 1111100000 00 0124567
Q ss_pred EEEecchhhh-cc-ccC-CceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHHHHHHHHHhc--
Q 037222 294 VFATRFIDVC-GS-MEA-DRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLALITIGRAMAC-- 368 (904)
Q Consensus 294 ivTtR~~~v~-~~-~~~-~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l~~-- 368 (904)
|.||...... .. ... ...+.+.+++.+|...++.+.+.......+ .+....+++.++|.|-.+..+...+..
T Consensus 142 i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~G~~r~l~~~l~~~~~~a 218 (324)
T 1hqc_A 142 IGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRIT---EEAALEIGRRSRGTMRVAKRLFRRVRDFA 218 (324)
T ss_dssp EEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHSCSCHHHHHHHHHHHTTTS
T ss_pred EEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 7777654321 11 112 257899999999999999888754321222 356788999999999888776655421
Q ss_pred ----C--CCHHHHHHHHHHHhhchhccCCchhhhHhhHhhcccCCCchhhhHHHhHhcCCCCCcccchHHH----HHHHH
Q 037222 369 ----K--RTAEEWIHAVEVLRRSAFEFAGLGKEVYPLLKFSYDSLQNETIRSCFLYCCLYPEDYGILKWDL----IDCWI 438 (904)
Q Consensus 369 ----~--~~~~~w~~~~~~l~~~~~~~~~~~~~v~~~l~~sy~~L~~~~~k~cfl~~~~fp~~~~i~~~~l----i~~w~ 438 (904)
. -+.+....+...+..........+..+...+.-.|..-+. ....+-..+++ ++..+ -++-+
T Consensus 219 ~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~e~~~i~~~~~~~~g~~~-~~~~~a~~lgi-------~~~tl~~~l~~~~i 290 (324)
T 1hqc_A 219 QVAGEEVITRERALEALAALGLDELGLEKRDREILEVLILRFGGGPV-GLATLATALSE-------DPGTLEEVHEPYLI 290 (324)
T ss_dssp TTTSCSCCCHHHHHHHHHHHTCCTTCCCHHHHHHHHHHHHHSCSSCC-CHHHHHHHTTS-------CHHHHHHHTHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHhcCCCc-hHHHHHHHhCC-------CHHHHHHHHhHHHH
Confidence 1 1334444443332211111111111222222222222221 12222223322 33332 23456
Q ss_pred hcCCccC-cchhcHHHHHHHHHH-HHHHhccccc
Q 037222 439 GEGFLEE-SDRFSAENQGYYIVG-TLIHACLLEG 470 (904)
Q Consensus 439 a~g~i~~-~~~~~~~~~~~~~~~-~L~~~~ll~~ 470 (904)
..|++.. ..+....+.|..||+ ++.+|+|+|+
T Consensus 291 ~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 291 RQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp HTTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred HhcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 6899876 556677889999998 9999999985
No 150
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.99 E-value=1.4e-09 Score=105.89 Aligned_cols=125 Identities=21% Similarity=0.281 Sum_probs=102.1
Q ss_pred ceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCc-cccccccCcEeecccCcccccchh-hhcCCCCcEee
Q 037222 541 LLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPL-GMSKLGSLELFDISRTEIQELPEE-LKLLVNLKCLN 618 (904)
Q Consensus 541 L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~-~i~~L~~L~~L~l~~~~i~~Lp~~-~~~L~~L~~L~ 618 (904)
.+.++++ ++.+..+|..+ .++|++|+++++ .++ .+|. .++.+++|++|++++|.++.+|.. +..+++|++|+
T Consensus 9 ~~~l~~~-~~~l~~~p~~~---~~~l~~L~l~~n-~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 82 (177)
T 2o6r_A 9 GTEIRCN-SKGLTSVPTGI---PSSATRLELESN-KLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILY 82 (177)
T ss_dssp TTEEECC-SSCCSSCCTTC---CTTCSEEECCSS-CCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCEEEec-CCCCccCCCCC---CCCCcEEEeCCC-ccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEE
Confidence 4678888 66688888653 368999999999 898 6665 468999999999999999999876 58999999999
Q ss_pred ccccccccccchhhhcCCCCCceeeecccCCcccccCCCCccccCCCccchHhhcCCCCCcEEEEEecc
Q 037222 619 LRWTSKLIRIPRQLISNSSGLRVLRMFATGYECFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGS 687 (904)
Q Consensus 619 l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 687 (904)
+++| .++.+|...+..+++|++|++.+|.+..+.. ..+..+++|+.|+++.+.
T Consensus 83 l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~---------------~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 83 LHEN-KLQSLPNGVFDKLTQLKELALDTNQLKSVPD---------------GIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCT---------------TTTTTCTTCCEEECCSSC
T ss_pred CCCC-CccccCHHHhhCCcccCEEECcCCcceEeCH---------------HHhcCCcccCEEEecCCC
Confidence 9999 7899988768899999999999997764221 125667888888887654
No 151
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.96 E-value=1.1e-09 Score=105.55 Aligned_cols=104 Identities=21% Similarity=0.291 Sum_probs=79.6
Q ss_pred ceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccccccccCcEeecccCcccccchh-hhcCCCCcEeec
Q 037222 541 LLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELFDISRTEIQELPEE-LKLLVNLKCLNL 619 (904)
Q Consensus 541 L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~l~~~~i~~Lp~~-~~~L~~L~~L~l 619 (904)
.++++++ ++.+..+|..+ .++|++|+|++| .++...|..++.+++|++|+|++|.++.+|.. +..+++|++|+|
T Consensus 11 ~~~l~~s-~n~l~~ip~~~---~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 11 GTTVDCS-GKSLASVPTGI---PTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp TTEEECT-TSCCSSCCSCC---CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEEeC-CCCcCccCccC---CCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence 4567777 55677777653 367888888888 88733366688888888888888888888775 478888888888
Q ss_pred cccccccccchhhhcCCCCCceeeecccCCc
Q 037222 620 RWTSKLIRIPRQLISNSSGLRVLRMFATGYE 650 (904)
Q Consensus 620 ~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 650 (904)
++| .++.+|.+.+.++++|++|++.+|.+.
T Consensus 86 ~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 86 NDN-QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CSS-CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCC-ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 888 778888766788888888888887664
No 152
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.95 E-value=1.7e-09 Score=116.80 Aligned_cols=98 Identities=14% Similarity=0.113 Sum_probs=47.4
Q ss_pred cCCccEEeEeccCCCCcCcc--cccCCCccEEeEecCccchhhcccCcccCCccccCCCCCCCccc-Eeecccccccccc
Q 037222 761 FRSLHRVTIFSCGKLKDVTF--LVFAPNLKSLELLQCDAMEEIISVGEIAETPEMMGHISPFENLQ-SLHLSYLPILRSI 837 (904)
Q Consensus 761 l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~L~~~~~L~~i 837 (904)
+++|+.|+|.+| .++.++. +..+++|+.|+|.++ ++.+.. ..+..+++|+ .+.|.+ +++.+
T Consensus 225 ~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~-----------~aF~~~~~L~~~l~l~~--~l~~I 288 (329)
T 3sb4_A 225 MPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPHN--LKTIGQ-----------RVFSNCGRLAGTLELPA--SVTAI 288 (329)
T ss_dssp CTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCTT--CCEECT-----------TTTTTCTTCCEEEEECT--TCCEE
T ss_pred cCCCeEEECCCC-CcceecHhhhhCCCCCCEEECCcc--cceehH-----------HHhhCChhccEEEEEcc--cceEE
Confidence 455555555554 3444432 455555666655542 333322 1344555565 555554 34444
Q ss_pred cCC-CCCCCCcceEeeccCCCCCCCCCCCCccCCCceEE
Q 037222 838 YWK-PLPFTHLKKMEVRRCDQLRRLPLDSNSATERNVVI 875 (904)
Q Consensus 838 ~~~-~~~~~~L~~L~i~~C~~L~~lp~~~~~~~~~l~~i 875 (904)
... ...|++|+.|++.+ .+++.++.+.......|..+
T Consensus 289 ~~~aF~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 289 EFGAFMGCDNLRYVLATG-DKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp CTTTTTTCTTEEEEEECS-SCCCEECTTTTCTTCCCCEE
T ss_pred chhhhhCCccCCEEEeCC-CccCccchhhhcCCcchhhh
Confidence 422 23455566665544 35555555444433444433
No 153
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.93 E-value=9.1e-09 Score=111.09 Aligned_cols=221 Identities=14% Similarity=0.013 Sum_probs=124.2
Q ss_pred cccCcEeecccCcccccchh-hhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCCcccccCCCCccccCCCc
Q 037222 588 LGSLELFDISRTEIQELPEE-LKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYECFHEAPEDSVLFGGGE 666 (904)
Q Consensus 588 L~~L~~L~l~~~~i~~Lp~~-~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 666 (904)
+.+|+.|+|.. .++.++.. +..|++|+.|++.++ .+..++..+|..+.++..+........... ..
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n-~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~-----------~~ 166 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKK-TAPNLLPEALADSVTAIFIPLGSSDAYRFK-----------NR 166 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCS-SCCEECTTSSCTTTCEEEECTTCTHHHHTS-----------TT
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCC-CccccchhhhcCCCceEEecCcchhhhhcc-----------cc
Confidence 77777777777 66666553 566777777777766 556666666666655555544321000000 00
Q ss_pred cchHhhcCCCCCc-EEEEEecchhhHHHhhh-cccccccceeeEecccCCCcchhhhhhhcccCccCceeecccCCccee
Q 037222 667 VLVQELLGLKYLE-VLELTLGSYQALQIFLS-SNKLKSCIRSLFLQLAGDTKSIIDAAAFADLNHLNELYIYEGIELEEL 744 (904)
Q Consensus 667 ~~~~~l~~L~~L~-~L~l~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l 744 (904)
..-..+..+..|+ .+.+. ....++.... ......++..+.+.+.-.. .........+++|++|++.++. +..+
T Consensus 167 i~~~~f~~~~~L~~~i~~~--~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~--~~~~~l~~~~~~L~~l~L~~n~-i~~I 241 (329)
T 3sb4_A 167 WEHFAFIEGEPLETTIQVG--AMGKLEDEIMKAGLQPRDINFLTIEGKLDN--ADFKLIRDYMPNLVSLDISKTN-ATTI 241 (329)
T ss_dssp TTTSCEEESCCCEEEEEEC--TTCCHHHHHHHTTCCGGGCSEEEEEECCCH--HHHHHHHHHCTTCCEEECTTBC-CCEE
T ss_pred ccccccccccccceeEEec--CCCcHHHHHhhcccCccccceEEEeeeecH--HHHHHHHHhcCCCeEEECCCCC-ccee
Confidence 0000122334444 23322 2222222111 1111245566666553211 1111122347899999998764 4444
Q ss_pred eeccccccccccCCcccCCccEEeEeccCCCCcCcc--cccCCCcc-EEeEecCccchhhcccCcccCCccccCCCCCCC
Q 037222 745 KIDYTEIVRKRREPFVFRSLHRVTIFSCGKLKDVTF--LVFAPNLK-SLELLQCDAMEEIISVGEIAETPEMMGHISPFE 821 (904)
Q Consensus 745 ~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~--l~~l~~L~-~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~ 821 (904)
....+ ..+++|+.|+|.++ ++.++. +..+++|+ .|.|.+ .++.+.. ..+..++
T Consensus 242 ~~~aF---------~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~-----------~aF~~c~ 297 (329)
T 3sb4_A 242 PDFTF---------AQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEF-----------GAFMGCD 297 (329)
T ss_dssp CTTTT---------TTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECT-----------TTTTTCT
T ss_pred cHhhh---------hCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEch-----------hhhhCCc
Confidence 33333 37889999999885 666654 78999999 999976 4555533 2678899
Q ss_pred cccEeecccccccccccCC-CCCCCCcceEe
Q 037222 822 NLQSLHLSYLPILRSIYWK-PLPFTHLKKME 851 (904)
Q Consensus 822 ~L~~L~L~~~~~L~~i~~~-~~~~~~L~~L~ 851 (904)
+|+.|++.+. +++.++.. ...+++|+.|.
T Consensus 298 ~L~~l~l~~n-~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 298 NLRYVLATGD-KITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TEEEEEECSS-CCCEECTTTTCTTCCCCEEE
T ss_pred cCCEEEeCCC-ccCccchhhhcCCcchhhhc
Confidence 9999999764 37777653 33466666654
No 154
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.90 E-value=5e-09 Score=112.91 Aligned_cols=184 Identities=13% Similarity=0.141 Sum_probs=113.7
Q ss_pred ccccchHHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCC-EEEEEEecCCCCHHHHHHHHHHHhC
Q 037222 158 RTVVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFD-CVIWVVVSKDLRLEKIQDDIGKKIG 236 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~vs~~~~~~~~~~~i~~~l~ 236 (904)
..++|++..++.+.+++..+..+.+.|+|++|+||||+|+.+++.. . ...+. ..+++..+.......+ +++++.+.
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l-~-~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~ 97 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHEL-L-GRSYADGVLELNASDDRGIDVV-RNQIKHFA 97 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHH-H-GGGHHHHEEEECTTSCCSHHHH-HTHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHh-c-CCcccCCEEEecCccccChHHH-HHHHHHHH
Confidence 4689999999999999987665559999999999999999999875 1 11111 2334433322222211 11111111
Q ss_pred CCCCCCCCCCHHHHHHHHHHHH-cCCcEEEEecccccc--cccccccCCCCCCCCCCcEEEEEecchhh-hc-cccCCce
Q 037222 237 LSDDSWKNKSFEEKAVDILRSL-GEKRFVLLLDDLWER--VDLTKVGVPLPGPQNTTSKVVFATRFIDV-CG-SMEADRK 311 (904)
Q Consensus 237 ~~~~~~~~~~~~~~~~~l~~~l-~~~r~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~IivTtR~~~v-~~-~~~~~~~ 311 (904)
... ..+ .+++.++|+||++.. ..+..+...+. ....++.+|+||+...- .. .......
T Consensus 98 ~~~----------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le-~~~~~~~~il~~~~~~~l~~~l~sr~~~ 160 (323)
T 1sxj_B 98 QKK----------------LHLPPGKHKIVILDEADSMTAGAQQALRRTME-LYSNSTRFAFACNQSNKIIEPLQSQCAI 160 (323)
T ss_dssp HBC----------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHH-HTTTTEEEEEEESCGGGSCHHHHTTSEE
T ss_pred hcc----------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHh-ccCCCceEEEEeCChhhchhHHHhhceE
Confidence 000 001 346889999999763 23444443333 33456788888876432 11 1223458
Q ss_pred eecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhH-HHHHHH
Q 037222 312 FLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLA-LITIGR 364 (904)
Q Consensus 312 ~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLa-i~~~~~ 364 (904)
+++.+++.++..+++.+.+....... -.+....|++.++|.|.. +..+..
T Consensus 161 i~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 161 LRYSKLSDEDVLKRLLQIIKLEDVKY---TNDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHTCCB---CHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred EeecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99999999999999988764322111 135567899999999954 444433
No 155
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.89 E-value=3.5e-09 Score=102.43 Aligned_cols=106 Identities=20% Similarity=0.304 Sum_probs=91.4
Q ss_pred eEEEeeccccccccCCCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCcc-ccccccCcEeeccc
Q 037222 520 TRLSLMQNQIKILSEVPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLG-MSKLGSLELFDISR 598 (904)
Q Consensus 520 r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~-i~~L~~L~~L~l~~ 598 (904)
+.+.+.++.+..+|... .++|+.|+++ ++.+..+++..|.++++|++|+|++| .++ .+|.. ++.+++|++|+|++
T Consensus 15 ~~l~~~~n~l~~iP~~~-~~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~-~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI-PTDKQRLWLN-NNQITKLEPGVFDHLVNLQQLYFNSN-KLT-AIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCSSCCSCC-CTTCSEEECC-SSCCCCCCTTTTTTCTTCCEEECCSS-CCC-CCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCCccCCCc-CCCCcEEEeC-CCCccccCHHHhcCCcCCCEEECCCC-CCC-ccChhHhCCcchhhEEECCC
Confidence 56788888888777632 4899999999 67788998888999999999999999 999 78776 58999999999999
Q ss_pred Ccccccchh-hhcCCCCcEeeccccccccccch
Q 037222 599 TEIQELPEE-LKLLVNLKCLNLRWTSKLIRIPR 630 (904)
Q Consensus 599 ~~i~~Lp~~-~~~L~~L~~L~l~~~~~l~~lp~ 630 (904)
|.++.+|.. +..+++|++|++++| .+...+.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N-~~~c~~~ 122 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNN-PWDCECR 122 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSS-CBCTTBG
T ss_pred CccceeCHHHhccccCCCEEEeCCC-Ccccccc
Confidence 999999986 889999999999999 5565554
No 156
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.79 E-value=1.1e-08 Score=98.43 Aligned_cols=105 Identities=18% Similarity=0.267 Sum_probs=89.4
Q ss_pred eeEEEeeccccccccCCCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCcc-ccccccCcEeecc
Q 037222 519 VTRLSLMQNQIKILSEVPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLG-MSKLGSLELFDIS 597 (904)
Q Consensus 519 ~r~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~-i~~L~~L~~L~l~ 597 (904)
.+.++++++.+..+|... .++|+.|+++ ++.+..+++..|.++++|++|+|++| .++ .+|.. +..+++|++|+|+
T Consensus 11 ~~~l~~s~n~l~~ip~~~-~~~l~~L~L~-~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~-~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI-PTTTQVLYLY-DNQITKLEPGVFDRLTQLTRLDLDNN-QLT-VLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECC-SSCCCCCCTTTTTTCTTCSEEECCSS-CCC-CCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCccCccC-CCCCcEEEcC-CCcCCccChhhhcCcccCCEEECCCC-CcC-ccChhhccCCCCCCEEECC
Confidence 356888888888877533 4899999999 67788998888999999999999999 999 77765 5899999999999
Q ss_pred cCcccccchh-hhcCCCCcEeecccccccccc
Q 037222 598 RTEIQELPEE-LKLLVNLKCLNLRWTSKLIRI 628 (904)
Q Consensus 598 ~~~i~~Lp~~-~~~L~~L~~L~l~~~~~l~~l 628 (904)
+|.++.+|.. +..+++|++|+|++| .+...
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N-~~~c~ 117 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNN-PWDCA 117 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSS-CBCTT
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCC-CCCCC
Confidence 9999999875 889999999999999 44433
No 157
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.76 E-value=4.1e-07 Score=100.34 Aligned_cols=98 Identities=21% Similarity=0.235 Sum_probs=45.7
Q ss_pred CceEEEeecCcccccccchhhcCCCcccEEEeecCCCccccc-CccccccccCcEeecccCcccccchhhhcCCCCcEee
Q 037222 540 DLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQL-PLGMSKLGSLELFDISRTEIQELPEELKLLVNLKCLN 618 (904)
Q Consensus 540 ~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~l-p~~i~~L~~L~~L~l~~~~i~~Lp~~~~~L~~L~~L~ 618 (904)
+|+.+.+. + .+..++...|.++ +|+.+.+.+ .++ .+ +..+.++.+|+.++++.|.++.+|.....+.+|+.+.
T Consensus 136 ~L~~i~l~-~-~i~~I~~~aF~~~-~L~~i~lp~--~l~-~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~ 209 (401)
T 4fdw_A 136 QIAKVVLN-E-GLKSIGDMAFFNS-TVQEIVFPS--TLE-QLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVL 209 (401)
T ss_dssp CCSEEECC-T-TCCEECTTTTTTC-CCCEEECCT--TCC-EECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEE
T ss_pred CccEEEeC-C-CccEECHHhcCCC-CceEEEeCC--Ccc-EehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEE
Confidence 35555544 1 1444444444443 355555543 233 22 2334455555555555555555554444445555555
Q ss_pred ccccccccccchhhhcCCCCCceeeec
Q 037222 619 LRWTSKLIRIPRQLISNSSGLRVLRMF 645 (904)
Q Consensus 619 l~~~~~l~~lp~~~i~~L~~L~~L~l~ 645 (904)
+..+ ++.++..+|.++++|+.+.+.
T Consensus 210 lp~~--l~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 210 LPVT--LKEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp CCTT--CCEECTTTTTTCTTCCCEECC
T ss_pred eCCc--hheehhhHhhCCCCCCEEecC
Confidence 5422 444554445555555555543
No 158
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.70 E-value=3e-08 Score=106.90 Aligned_cols=183 Identities=16% Similarity=0.137 Sum_probs=113.0
Q ss_pred ccccchHHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCC-CEEEEEEecCCCCHHHHHHHHHHHhC
Q 037222 158 RTVVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNF-DCVIWVVVSKDLRLEKIQDDIGKKIG 236 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f-~~~~wv~vs~~~~~~~~~~~i~~~l~ 236 (904)
..++|++..++.+.+++..+..+.+.++|++|+||||+|+.+++.. .. ..+ ...+.+..+.......+ +..+
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l-~~-~~~~~~~~~~~~~~~~~~~~~-~~~~---- 97 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALAREL-FG-ENWRHNFLELNASDERGINVI-REKV---- 97 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHH-HG-GGHHHHEEEEETTCHHHHHTT-HHHH----
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHh-cC-CcccCceEEeeccccCchHHH-HHHH----
Confidence 4589999999999999988766669999999999999999999875 11 111 11233332221111100 0001
Q ss_pred CCCCCCCCCCHHHHHHHHHHH--H-cCCcEEEEecccccc--cccccccCCCCCCCCCCcEEEEEecchhh-hcc-ccCC
Q 037222 237 LSDDSWKNKSFEEKAVDILRS--L-GEKRFVLLLDDLWER--VDLTKVGVPLPGPQNTTSKVVFATRFIDV-CGS-MEAD 309 (904)
Q Consensus 237 ~~~~~~~~~~~~~~~~~l~~~--l-~~~r~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~IivTtR~~~v-~~~-~~~~ 309 (904)
...... + .+++.++|+||++.. ..+..+...+. ....++++|+||....- ... ....
T Consensus 98 ---------------~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le-~~~~~~~~i~~~~~~~~l~~~l~sr~ 161 (327)
T 1iqp_A 98 ---------------KEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTME-MFSSNVRFILSCNYSSKIIEPIQSRC 161 (327)
T ss_dssp ---------------HHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHH-HTTTTEEEEEEESCGGGSCHHHHHTE
T ss_pred ---------------HHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHH-hcCCCCeEEEEeCCccccCHHHHhhC
Confidence 010000 1 256889999999753 33444443333 33456788888876432 111 1123
Q ss_pred ceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHHHHHHHHH
Q 037222 310 RKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLALITIGRAM 366 (904)
Q Consensus 310 ~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~l 366 (904)
..+.+.+++.++...++.+.+...... --.+..+.|++.++|.|..+..+...+
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~~~~~~~~---~~~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 162 AIFRFRPLRDEDIAKRLRYIAENEGLE---LTEEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCE---ECHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cEEEecCCCHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 478999999999999998876433211 123566789999999998765544433
No 159
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.66 E-value=3e-07 Score=96.56 Aligned_cols=171 Identities=5% Similarity=0.013 Sum_probs=105.0
Q ss_pred cccchHHHHHHHHHHHhc----CCceEEEEEcCCCCcHHHHHHHHHHhcccCCC--CC-C-EEEEEEecCCCCHHHHHHH
Q 037222 159 TVVGLQSQLEQVWRCLVE----ESVGIIGLYGMGGVGKTTLLTHINNKFLESPT--NF-D-CVIWVVVSKDLRLEKIQDD 230 (904)
Q Consensus 159 ~~vGr~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--~f-~-~~~wv~vs~~~~~~~~~~~ 230 (904)
.+.||++++++|...|.. +..+.+.|+|++|+|||++++.+++....... .. + ..++|.+..-.+...++..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHH
Confidence 478999999999988764 56778999999999999999999998722111 11 1 3567777777788899999
Q ss_pred HHHHhCCCCCCCCCCCHHHHHHHHHHHH---cCCcEEEEecccccccccccccCCC--CCCCCCCcEEEEEecchhhhc-
Q 037222 231 IGKKIGLSDDSWKNKSFEEKAVDILRSL---GEKRFVLLLDDLWERVDLTKVGVPL--PGPQNTTSKVVFATRFIDVCG- 304 (904)
Q Consensus 231 i~~~l~~~~~~~~~~~~~~~~~~l~~~l---~~~r~LlVlDdv~~~~~~~~~~~~l--~~~~~~gs~IivTtR~~~v~~- 304 (904)
|++++..... ...........+...+ .+++++++||+++.-.+-+-+...+ +........||.++...+...
T Consensus 101 I~~~L~g~~~--~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~ 178 (318)
T 3te6_A 101 IWFAISKENL--CGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIRE 178 (318)
T ss_dssp HHHHHSCCC----CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHH
T ss_pred HHHHhcCCCC--CchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchh
Confidence 9999954321 1112223333333333 4578999999997532211111111 101111223344444332211
Q ss_pred ----cc-c--CCceeecccCCHHHHHHHHHHhhC
Q 037222 305 ----SM-E--ADRKFLVACLSEKDAWELFREKVG 331 (904)
Q Consensus 305 ----~~-~--~~~~~~l~~L~~~e~~~Lf~~~~~ 331 (904)
.. . ....+.+.+++.+|-.+++.+++.
T Consensus 179 ~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 179 QINIMPSLKAHFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred hcchhhhccCCceEEEeCCCCHHHHHHHHHHHHH
Confidence 10 1 124789999999999999988873
No 160
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.64 E-value=6.9e-08 Score=105.04 Aligned_cols=101 Identities=19% Similarity=0.240 Sum_probs=60.1
Q ss_pred EEeecCcccccccchhhcCCCcccEEEeec-CCCcccccC-ccccccccCcEeecccCcccccch-hhhcCCCCcEeecc
Q 037222 544 LFLDFNEELEMIADGFFQFMPSLKVLKISN-CGNFTFQLP-LGMSKLGSLELFDISRTEIQELPE-ELKLLVNLKCLNLR 620 (904)
Q Consensus 544 L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~-~~~i~~~lp-~~i~~L~~L~~L~l~~~~i~~Lp~-~~~~L~~L~~L~l~ 620 (904)
+++++.+.+..+|. +..+++|++|+|++ | .++ .+| ..++.|.+|++|+|++|.|..+|. .+.+|++|++|+|+
T Consensus 13 v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n-~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 13 LRCTRDGALDSLHH--LPGAENLTELYIENQQ-HLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp EECCSSCCCTTTTT--SCSCSCCSEEECCSCS-SCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEcCCCCCCCccCC--CCCCCCeeEEEccCCC-CCC-CcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 45552225556665 56666666666664 5 666 444 456666666666666666666544 44666666666666
Q ss_pred ccccccccchhhhcCCCCCceeeecccCCc
Q 037222 621 WTSKLIRIPRQLISNSSGLRVLRMFATGYE 650 (904)
Q Consensus 621 ~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 650 (904)
+| .++.+|.+.+..++ |+.|++.+|.+.
T Consensus 89 ~N-~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 89 FN-ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SS-CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CC-ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 66 56666655444444 666666666543
No 161
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.60 E-value=6.8e-07 Score=98.60 Aligned_cols=238 Identities=13% Similarity=0.193 Sum_probs=155.2
Q ss_pred ceeEEEeeccccccccC--CCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccccccccCcEee
Q 037222 518 NVTRLSLMQNQIKILSE--VPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELFD 595 (904)
Q Consensus 518 ~~r~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~ 595 (904)
+++.+.+..+ +..+.. +..+ +|+.+.+. + .+..++...|.+|++|+.++++++ .++ .+|...-...+|+.+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp-~-~l~~I~~~aF~~c~~L~~l~l~~n-~l~-~I~~~aF~~~~L~~l~ 209 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFP-S-TLEQLKEDIFYYCYNLKKADLSKT-KIT-KLPASTFVYAGIEEVL 209 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECC-T-TCCEECSSTTTTCTTCCEEECTTS-CCS-EECTTTTTTCCCSEEE
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeC-C-CccEehHHHhhCcccCCeeecCCC-cce-EechhhEeecccCEEE
Confidence 5666666544 444433 3444 69999998 3 688899889999999999999999 898 8887766678999999
Q ss_pred cccCcccccch-hhhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCCcccccCCCCccccCCCccchHhhcC
Q 037222 596 ISRTEIQELPE-ELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYECFHEAPEDSVLFGGGEVLVQELLG 674 (904)
Q Consensus 596 l~~~~i~~Lp~-~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 674 (904)
+..+ ++.++. .+.++.+|+.+++..+ ++.++..+|.+ ++|+.+.+.. .+..++ -..+..
T Consensus 210 lp~~-l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~-~i~~I~---------------~~aF~~ 269 (401)
T 4fdw_A 210 LPVT-LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPN-GVTNIA---------------SRAFYY 269 (401)
T ss_dssp CCTT-CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEET-TCCEEC---------------TTTTTT
T ss_pred eCCc-hheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCC-CccEEC---------------hhHhhC
Confidence 9854 777765 5678999999999864 78888887877 8899999853 232221 122667
Q ss_pred CCCCcEEEEEecchhhHHHhhhcccccccceeeEecccCCCcchhhhhhhcccCccCceeecccCCcceeeecccccccc
Q 037222 675 LKYLEVLELTLGSYQALQIFLSSNKLKSCIRSLFLQLAGDTKSIIDAAAFADLNHLNELYIYEGIELEELKIDYTEIVRK 754 (904)
Q Consensus 675 L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~ 754 (904)
+++|+.+.+..+.... ..+ ..+ ....+.+|++|+.+.|.+ .+..+....+
T Consensus 270 c~~L~~l~l~~~~~~~-----------~~~-----------~~I-~~~aF~~c~~L~~l~l~~--~i~~I~~~aF----- 319 (401)
T 4fdw_A 270 CPELAEVTTYGSTFND-----------DPE-----------AMI-HPYCLEGCPKLARFEIPE--SIRILGQGLL----- 319 (401)
T ss_dssp CTTCCEEEEESSCCCC-----------CTT-----------CEE-CTTTTTTCTTCCEECCCT--TCCEECTTTT-----
T ss_pred CCCCCEEEeCCccccC-----------Ccc-----------cEE-CHHHhhCCccCCeEEeCC--ceEEEhhhhh-----
Confidence 7788887775332110 000 000 013566777788777763 2444333333
Q ss_pred ccCCcccCCccEEeEeccCCCCcCcc--cccCCCccEEeEecCccchhhcccCcccCCccccCCCCCCC-cccEeeccc
Q 037222 755 RREPFVFRSLHRVTIFSCGKLKDVTF--LVFAPNLKSLELLQCDAMEEIISVGEIAETPEMMGHISPFE-NLQSLHLSY 830 (904)
Q Consensus 755 ~~~~~~l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~~~-~L~~L~L~~ 830 (904)
..+++|+.|.|..+ ++.+.. +..+ +|+.|.+.++. +..+.. ..+.+++ +++.|.+-.
T Consensus 320 ----~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n~-~~~l~~-----------~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 320 ----GGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGTT-PPQVFE-----------KVWYGFPDDITVIRVPA 379 (401)
T ss_dssp ----TTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECCSS-CCBCCC-----------SSCCCSCTTCCEEEECG
T ss_pred ----cCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCCC-Cccccc-----------ccccCCCCCccEEEeCH
Confidence 25677888887543 444442 6667 88888887642 333322 1344453 577777754
No 162
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.56 E-value=1.1e-07 Score=103.36 Aligned_cols=104 Identities=17% Similarity=0.216 Sum_probs=87.6
Q ss_pred EEEeecc-ccccccCCCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccCccccccccCcEeecccC
Q 037222 521 RLSLMQN-QIKILSEVPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLPLGMSKLGSLELFDISRT 599 (904)
Q Consensus 521 ~l~l~~~-~~~~l~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~~L~~L~l~~~ 599 (904)
.+...++ .+..+|.+..+++|+.|+|++++.+..+++..|.++++|++|+|++| .+++..|..+++|++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCC
Confidence 3455666 67777777888899999999447899999888999999999999999 999445567899999999999999
Q ss_pred cccccchhhhcCCCCcEeecccccccc
Q 037222 600 EIQELPEELKLLVNLKCLNLRWTSKLI 626 (904)
Q Consensus 600 ~i~~Lp~~~~~L~~L~~L~l~~~~~l~ 626 (904)
.+..+|..+....+|++|+|.+| .+.
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N-~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGN-PLH 116 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSS-CCC
T ss_pred ccceeCHHHcccCCceEEEeeCC-Ccc
Confidence 99999987766556999999988 444
No 163
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.54 E-value=3.9e-07 Score=97.74 Aligned_cols=180 Identities=12% Similarity=0.127 Sum_probs=112.0
Q ss_pred ccccchHHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCC-EEEEEEecCCCCHHHHHHHHHHHhC
Q 037222 158 RTVVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFD-CVIWVVVSKDLRLEKIQDDIGKKIG 236 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~vs~~~~~~~~~~~i~~~l~ 236 (904)
..++|++..++.+.+++..+..+.+.++|++|+||||+|+.+++.. . ...+. ..+.+..+.....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l-~-~~~~~~~~~~~~~~~~~~~------------ 82 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL-F-GENWRDNFIEMNASDERGI------------ 82 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHH-H-TTCHHHHCEEEETTSTTCT------------
T ss_pred HHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHh-c-CCcccCCeEEEeCccccCh------------
Confidence 4589999999999998887665558999999999999999999875 1 11211 1233333321110
Q ss_pred CCCCCCCCCCHHHHHHHHHHH--H-cCCcEEEEecccccc--cccccccCCCCCCCCCCcEEEEEecchh-hh-ccccCC
Q 037222 237 LSDDSWKNKSFEEKAVDILRS--L-GEKRFVLLLDDLWER--VDLTKVGVPLPGPQNTTSKVVFATRFID-VC-GSMEAD 309 (904)
Q Consensus 237 ~~~~~~~~~~~~~~~~~l~~~--l-~~~r~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~IivTtR~~~-v~-~~~~~~ 309 (904)
.........+... + .+++-++|+|+++.- .....+...+. ....+.++|+||.... +. ......
T Consensus 83 --------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le-~~~~~~~~i~~~~~~~~l~~~l~sr~ 153 (319)
T 2chq_A 83 --------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTME-MYSKSCRFILSCNYVSRIIEPIQSRC 153 (319)
T ss_dssp --------TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTS-SSSSSEEEEEEESCGGGSCHHHHTTC
T ss_pred --------HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHH-hcCCCCeEEEEeCChhhcchHHHhhC
Confidence 0111111111111 1 256889999999753 23444555554 3445678888876543 21 111234
Q ss_pred ceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHHHHHH
Q 037222 310 RKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLALITIG 363 (904)
Q Consensus 310 ~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 363 (904)
..+.+.+++.++...++.+.+....... -.+....+++.++|.+..+....
T Consensus 154 ~~i~~~~~~~~~~~~~l~~~~~~~~~~i---~~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 154 AVFRFKPVPKEAMKKRLLEICEKEGVKI---TEDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTCCCB---CHHHHHHHHHTTTTCHHHHHHHH
T ss_pred eEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 5899999999999999988775332111 13456788899999987654443
No 164
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.54 E-value=6.9e-07 Score=98.16 Aligned_cols=194 Identities=14% Similarity=0.110 Sum_probs=110.5
Q ss_pred ccccchHHHHHHHHHHHhcCC-ceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhC
Q 037222 158 RTVVGLQSQLEQVWRCLVEES-VGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIG 236 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 236 (904)
..++|++..++.+..++..+. .+.+.|+|++|+||||+|+.+++.. .....+. ...+..-.....+.....
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l-~~~~~~~-------~~~~~~~~~~~~~~~~~~ 87 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL-NCETGIT-------ATPCGVCDNCREIEQGRF 87 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHH-SCTTCSC-------SSCCSSSHHHHHHHTSCC
T ss_pred hhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHh-CCCCCCC-------CCCCcccHHHHHHhccCC
Confidence 458999999999999997754 4578899999999999999999876 2111110 000000001111111000
Q ss_pred -----CCCC-CCCCCCHHHHHHHHHHH-HcCCcEEEEecccccc--cccccccCCCCCCCCCCcEEEEEecchh-hh-cc
Q 037222 237 -----LSDD-SWKNKSFEEKAVDILRS-LGEKRFVLLLDDLWER--VDLTKVGVPLPGPQNTTSKVVFATRFID-VC-GS 305 (904)
Q Consensus 237 -----~~~~-~~~~~~~~~~~~~l~~~-l~~~r~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~IivTtR~~~-v~-~~ 305 (904)
.... .............+... ..+++.++|+||++.- ..+..+...+. ....+..+|++|.... +. ..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le-~~~~~~~~Il~~~~~~~l~~~l 166 (373)
T 1jr3_A 88 VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLE-EPPEHVKFLLATTDPQKLPVTI 166 (373)
T ss_dssp SSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHH-SCCSSEEEEEEESCGGGSCHHH
T ss_pred CceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHh-cCCCceEEEEEeCChHhCcHHH
Confidence 0000 00111222222211110 1356789999999653 23344433333 2334567777776443 21 11
Q ss_pred ccCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHHHHHH
Q 037222 306 MEADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLALITIG 363 (904)
Q Consensus 306 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 363 (904)
......+++.+++.++...++.+.+....... -.+....|++.++|.|..+..+.
T Consensus 167 ~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~---~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 167 LSRCLQFHLKALDVEQIRHQLEHILNEEHIAH---EPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHHHTCCB---CHHHHHHHHHHSSSCHHHHHHHH
T ss_pred HhheeEeeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHCCCCHHHHHHHH
Confidence 22346889999999999999987764322111 13456789999999998876654
No 165
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.48 E-value=1.4e-07 Score=92.83 Aligned_cols=150 Identities=21% Similarity=0.254 Sum_probs=85.4
Q ss_pred ccccchHHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhcccCCC----CCCEEEEEEecCCCCHHHHHHHHHH
Q 037222 158 RTVVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPT----NFDCVIWVVVSKDLRLEKIQDDIGK 233 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~f~~~~wv~vs~~~~~~~~~~~i~~ 233 (904)
..++||+.+++++.+++.....+.+.|+|++|+||||+|+.+++....... .....+++.++ .+.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~----- 90 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMG------ALV----- 90 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHH------HHH-----
T ss_pred cccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHH------HHh-----
Confidence 458999999999999998766677899999999999999999887621100 11234444321 111
Q ss_pred HhCCCCCCCCCCCHHHHHHHHHHHH--cCCcEEEEeccccccc---------cccc-ccCCCCCCCCCCcEEEEEecchh
Q 037222 234 KIGLSDDSWKNKSFEEKAVDILRSL--GEKRFVLLLDDLWERV---------DLTK-VGVPLPGPQNTTSKVVFATRFID 301 (904)
Q Consensus 234 ~l~~~~~~~~~~~~~~~~~~l~~~l--~~~r~LlVlDdv~~~~---------~~~~-~~~~l~~~~~~gs~IivTtR~~~ 301 (904)
.... ...........+...+ .+++.+|||||++... ++.. +...+. ..+..+|+||....
T Consensus 91 --~~~~---~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~---~~~~~~i~~~~~~~ 162 (195)
T 1jbk_A 91 --AGAK---YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA---RGELHCVGATTLDE 162 (195)
T ss_dssp --TTTC---SHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHH---TTSCCEEEEECHHH
T ss_pred --ccCC---ccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhc---cCCeEEEEeCCHHH
Confidence 0000 0011112222222222 4568899999996531 1111 111111 23456777776554
Q ss_pred hh-------ccccCCceeecccCCHHHHHHHH
Q 037222 302 VC-------GSMEADRKFLVACLSEKDAWELF 326 (904)
Q Consensus 302 v~-------~~~~~~~~~~l~~L~~~e~~~Lf 326 (904)
.. ........+.+.+++.++..+++
T Consensus 163 ~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 163 YRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 21 11122236788889888876654
No 166
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.43 E-value=4.3e-08 Score=107.12 Aligned_cols=156 Identities=15% Similarity=0.099 Sum_probs=87.3
Q ss_pred ceeEEEeecccccccc-----CC--CCCCCceEEEeecCccccccc-chhhcCCCcccEEEeecCCCcccccCccc----
Q 037222 518 NVTRLSLMQNQIKILS-----EV--PTCPDLLTLFLDFNEELEMIA-DGFFQFMPSLKVLKISNCGNFTFQLPLGM---- 585 (904)
Q Consensus 518 ~~r~l~l~~~~~~~l~-----~~--~~~~~L~~L~l~~~~~l~~~~-~~~~~~l~~Lr~L~l~~~~~i~~~lp~~i---- 585 (904)
.++.+++.+|.+.... .. ..+++|+.|+++ ++.+.... ..++..+++|++|+|++| .++......+
T Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls-~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L 150 (372)
T 3un9_A 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLA-SCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLL 150 (372)
T ss_dssp TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECT-TCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHH
T ss_pred hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEec-CCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHH
Confidence 4667777776654311 11 234678888887 33343221 222344567788888887 6652222222
Q ss_pred -cccccCcEeecccCcccc-----cchhhhcCCCCcEeeccccccccccc----hhhhcCCCCCceeeecccCCcccccC
Q 037222 586 -SKLGSLELFDISRTEIQE-----LPEELKLLVNLKCLNLRWTSKLIRIP----RQLISNSSGLRVLRMFATGYECFHEA 655 (904)
Q Consensus 586 -~~L~~L~~L~l~~~~i~~-----Lp~~~~~L~~L~~L~l~~~~~l~~lp----~~~i~~L~~L~~L~l~~~~~~~~~~~ 655 (904)
...++|++|+|++|.+.. ++..+..+++|++|+|++| .+.... ...+...++|++|++.+|.+...+.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~- 228 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA- 228 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH-
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH-
Confidence 234667888888877653 4555667777888888777 454322 1125566777777777776642110
Q ss_pred CCCccccCCCccchHhhcCCCCCcEEEEEecc
Q 037222 656 PEDSVLFGGGEVLVQELLGLKYLEVLELTLGS 687 (904)
Q Consensus 656 ~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 687 (904)
......+...++|+.|+++.|.
T Consensus 229 ----------~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 229 ----------LALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp ----------HHHHHHHHHCSSCCEEECTTSS
T ss_pred ----------HHHHHHHHhCCCCCEEeccCCC
Confidence 0122334445666666665554
No 167
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.38 E-value=7.1e-08 Score=105.41 Aligned_cols=37 Identities=5% Similarity=0.116 Sum_probs=15.8
Q ss_pred CcccEEEeecCCCcccccCccc-cccccCcEeecccCcc
Q 037222 564 PSLKVLKISNCGNFTFQLPLGM-SKLGSLELFDISRTEI 601 (904)
Q Consensus 564 ~~Lr~L~l~~~~~i~~~lp~~i-~~L~~L~~L~l~~~~i 601 (904)
++|++|+|++| .++......+ ..+.+|++|+|++|.+
T Consensus 101 ~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n~l 138 (372)
T 3un9_A 101 HALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLNSL 138 (372)
T ss_dssp SCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSSCC
T ss_pred CCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCCCC
Confidence 45555555555 4431111111 2334455555555544
No 168
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.28 E-value=4.7e-06 Score=92.98 Aligned_cols=182 Identities=16% Similarity=0.139 Sum_probs=104.5
Q ss_pred ccc-chHH--HHHHHHHHHhcCC-ceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHH
Q 037222 159 TVV-GLQS--QLEQVWRCLVEES-VGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKK 234 (904)
Q Consensus 159 ~~v-Gr~~--~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 234 (904)
.|+ |... ....+.......+ ...+.|+|++|+||||||+.+++... ....-..++++.. ..+..++...
T Consensus 106 ~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~-~~~~~~~v~~v~~------~~~~~~~~~~ 178 (440)
T 2z4s_A 106 NFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVV-QNEPDLRVMYITS------EKFLNDLVDS 178 (440)
T ss_dssp GCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHH-HHCCSSCEEEEEH------HHHHHHHHHH
T ss_pred hcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHH-HhCCCCeEEEeeH------HHHHHHHHHH
Confidence 344 6433 3334444443333 56789999999999999999998761 1110113455543 3344455544
Q ss_pred hCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEeccccccc----ccccccCCCCCCCCCCcEEEEEecchh---------
Q 037222 235 IGLSDDSWKNKSFEEKAVDILRSLGEKRFVLLLDDLWERV----DLTKVGVPLPGPQNTTSKVVFATRFID--------- 301 (904)
Q Consensus 235 l~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~----~~~~~~~~l~~~~~~gs~IivTtR~~~--------- 301 (904)
+... . ...+...++.++-+|++||++... ..+.+...+......|..||+||....
T Consensus 179 ~~~~-------~----~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~ 247 (440)
T 2z4s_A 179 MKEG-------K----LNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDR 247 (440)
T ss_dssp HHTT-------C----HHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHH
T ss_pred HHcc-------c----HHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHH
Confidence 4321 1 122334444467799999996532 122222222101234678899888632
Q ss_pred hhccccCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHHHH
Q 037222 302 VCGSMEADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLALIT 361 (904)
Q Consensus 302 v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 361 (904)
+...+.....+.+++++.++...++.+.+.......++ +....|++.++|.+-.+..
T Consensus 248 L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~---e~l~~la~~~~gn~R~l~~ 304 (440)
T 2z4s_A 248 LVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPE---EVLNFVAENVDDNLRRLRG 304 (440)
T ss_dssp HHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHCCSCHHHHHH
T ss_pred HHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHhcCCCHHHHHH
Confidence 12223334678999999999999998887533222222 3456788889998865543
No 169
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.28 E-value=4.6e-07 Score=92.68 Aligned_cols=173 Identities=9% Similarity=0.052 Sum_probs=100.4
Q ss_pred ccccch---HHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHH
Q 037222 158 RTVVGL---QSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKK 234 (904)
Q Consensus 158 ~~~vGr---~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 234 (904)
..|+|. +..++.+..+......+.+.|+|++|+||||||+.+++.. .. ....+.|+.++...+ .+.+.
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~-~~--~~~~~~~~~~~~~~~------~~~~~ 98 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARA-NE--LERRSFYIPLGIHAS------ISTAL 98 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHH-HH--TTCCEEEEEGGGGGG------SCGGG
T ss_pred hhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH-HH--cCCeEEEEEHHHHHH------HHHHH
Confidence 345653 3556666666655566789999999999999999999887 21 123456666543211 00000
Q ss_pred hCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEeccccccc--c--cccccCCCCCCCCCC-cEEEEEecchhh-------
Q 037222 235 IGLSDDSWKNKSFEEKAVDILRSLGEKRFVLLLDDLWERV--D--LTKVGVPLPGPQNTT-SKVVFATRFIDV------- 302 (904)
Q Consensus 235 l~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~--~--~~~~~~~l~~~~~~g-s~IivTtR~~~v------- 302 (904)
+ ..+ .++-+||+||++... . ...+...+......+ .++|+||+...-
T Consensus 99 ~--------------------~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~ 157 (242)
T 3bos_A 99 L--------------------EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLP 157 (242)
T ss_dssp G--------------------TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCH
T ss_pred H--------------------Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhh
Confidence 0 011 346689999997531 1 222222111000112 257887774321
Q ss_pred --hccccCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHHHHHH
Q 037222 303 --CGSMEADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLALITIG 363 (904)
Q Consensus 303 --~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 363 (904)
...+.....+++.+++.++..+++.+.+....... -.+....+++.++|.+-.+..+.
T Consensus 158 ~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 158 DLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQL---PEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp HHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCC---CHHHHHHHHHHTTTCHHHHHHHH
T ss_pred hhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHccCCHHHHHHHH
Confidence 11111226789999999999999988774322111 24566788899999887665443
No 170
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.25 E-value=1.1e-05 Score=89.12 Aligned_cols=105 Identities=12% Similarity=0.207 Sum_probs=63.2
Q ss_pred CCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccC-ccccccccCcEeecccC------------c-
Q 037222 535 VPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLP-LGMSKLGSLELFDISRT------------E- 600 (904)
Q Consensus 535 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp-~~i~~L~~L~~L~l~~~------------~- 600 (904)
+..|.+|+++.+. . .++.++...|.+|.+|+.+++.++ ++ .++ ..+.++.+|+.+.+..+ .
T Consensus 67 F~~c~~L~~i~lp-~-~i~~I~~~aF~~c~~L~~i~lp~~--l~-~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~ 141 (394)
T 4fs7_A 67 FQGCRKVTEIKIP-S-TVREIGEFAFENCSKLEIINIPDS--VK-MIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDF 141 (394)
T ss_dssp TTTCTTEEEEECC-T-TCCEECTTTTTTCTTCCEECCCTT--CC-EECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCC
T ss_pred hhCCCCceEEEeC-C-CccCcchhHhhCCCCCcEEEeCCC--ce-EccchhhcccccchhhcccCceeeecceeeecccc
Confidence 4677788888776 2 367777777888888888877643 33 322 33445555555544322 0
Q ss_pred --------cccc-chhhhcCCCCcEeeccccccccccchhhhcCCCCCceeeecc
Q 037222 601 --------IQEL-PEELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFA 646 (904)
Q Consensus 601 --------i~~L-p~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~ 646 (904)
+..+ ...+.++.+|+.+.+..+ +..++.+.+.++++|+.+.+..
T Consensus 142 ~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~ 194 (394)
T 4fs7_A 142 KEITIPEGVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPR 194 (394)
T ss_dssp SEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCT
T ss_pred cccccCccccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCC
Confidence 0111 123556677777777643 4566666677777777777654
No 171
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.22 E-value=9.3e-06 Score=92.75 Aligned_cols=190 Identities=12% Similarity=0.079 Sum_probs=108.9
Q ss_pred ccccchHHHHHHHHHHHhc-----------------CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecC
Q 037222 158 RTVVGLQSQLEQVWRCLVE-----------------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSK 220 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-----------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~ 220 (904)
..++|++..++++.+++.. +..+.+.|+|++|+||||+|+.+++.. .+ ..+.+..+.
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l-----~~-~~i~in~s~ 112 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL-----GY-DILEQNASD 112 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT-----TC-EEEEECTTS
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc-----CC-CEEEEeCCC
Confidence 5689999999999999864 134689999999999999999999876 12 234454444
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEecccccccc-----cccccCCCCCCCCCCcEEEE
Q 037222 221 DLRLEKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSLGEKRFVLLLDDLWERVD-----LTKVGVPLPGPQNTTSKVVF 295 (904)
Q Consensus 221 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~-----~~~~~~~l~~~~~~gs~Iiv 295 (904)
..... +....+........ ... -...... .....+++.+|++|+++.... +..+...+. . .+..||+
T Consensus 113 ~~~~~-~~~~~i~~~~~~~~-~~~-~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~-~--~~~~iIl 184 (516)
T 1sxj_A 113 VRSKT-LLNAGVKNALDNMS-VVG-YFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCR-K--TSTPLIL 184 (516)
T ss_dssp CCCHH-HHHHTGGGGTTBCC-STT-TTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHH-H--CSSCEEE
T ss_pred cchHH-HHHHHHHHHhcccc-HHH-HHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHH-h--cCCCEEE
Confidence 43332 23332222211100 000 0000000 001135788999999975311 223322222 1 2334565
Q ss_pred Eecchh---hhccccCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCc-hhHHHHHHH
Q 037222 296 ATRFID---VCGSMEADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGL-PLALITIGR 364 (904)
Q Consensus 296 TtR~~~---v~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl-PLai~~~~~ 364 (904)
++.... +.........+.+.+++.++..+.+.+.+.......++ +....|++.++|. +-|+..+..
T Consensus 185 i~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~---~~l~~la~~s~GdiR~~i~~L~~ 254 (516)
T 1sxj_A 185 ICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP---NVIDRLIQTTRGDIRQVINLLST 254 (516)
T ss_dssp EESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHTTTCHHHHHHHHTH
T ss_pred EEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCcHHHHHHHHHH
Confidence 555432 22222334578999999999999988877543322222 3466888999994 555555543
No 172
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.19 E-value=2.3e-05 Score=87.23 Aligned_cols=174 Identities=17% Similarity=0.161 Sum_probs=103.7
Q ss_pred ccccchHHHH---HHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCC-CHHHHHHHHHH
Q 037222 158 RTVVGLQSQL---EQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDL-RLEKIQDDIGK 233 (904)
Q Consensus 158 ~~~vGr~~~~---~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~ 233 (904)
..++|.+..+ ..+...+..+..+.+.++|++|+||||+|+.+++.. ... ++.++... ....+ +.
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~---~~~-----f~~l~a~~~~~~~i-r~--- 93 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA---NAD-----VERISAVTSGVKEI-RE--- 93 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT---TCE-----EEEEETTTCCHHHH-HH---
T ss_pred HHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh---CCC-----eEEEEeccCCHHHH-HH---
Confidence 4579998887 677888877777889999999999999999999886 222 23332211 11111 11
Q ss_pred HhCCCCCCCCCCCHHHHHHHHHH-HHcCCcEEEEecccccc--cccccccCCCCCCCCCCcEEEE-Eecchh--h-hccc
Q 037222 234 KIGLSDDSWKNKSFEEKAVDILR-SLGEKRFVLLLDDLWER--VDLTKVGVPLPGPQNTTSKVVF-ATRFID--V-CGSM 306 (904)
Q Consensus 234 ~l~~~~~~~~~~~~~~~~~~l~~-~l~~~r~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~Iiv-TtR~~~--v-~~~~ 306 (904)
....... ...+++.+|++|+++.- ...+.+...+. . ....+|. ||.+.. + ....
T Consensus 94 ----------------~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le-~--~~v~lI~att~n~~~~l~~aL~ 154 (447)
T 3pvs_A 94 ----------------AIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIE-D--GTITFIGATTENPSFELNSALL 154 (447)
T ss_dssp ----------------HHHHHHHHHHTTCCEEEEEETTTCC------CCHHHHH-T--TSCEEEEEESSCGGGSSCHHHH
T ss_pred ----------------HHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHh-c--CceEEEecCCCCcccccCHHHh
Confidence 1111111 12467889999999753 23344444443 2 2234444 444432 1 1222
Q ss_pred cCCceeecccCCHHHHHHHHHHhhCcccc----CCCccHHHHHHHHHHHhCCchhHHHHH
Q 037222 307 EADRKFLVACLSEKDAWELFREKVGEETL----QSHHDIVELAQIVAKECGGLPLALITI 362 (904)
Q Consensus 307 ~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~----~~~~~~~~~~~~i~~~c~GlPLai~~~ 362 (904)
.....+.+++++.++...++.+.+..... ....--.+..+.|++.++|.+-.+..+
T Consensus 155 sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~ 214 (447)
T 3pvs_A 155 SRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNT 214 (447)
T ss_dssp TTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHH
T ss_pred CceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHH
Confidence 33458899999999999999888643110 011112456678888899987655443
No 173
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.18 E-value=4.7e-06 Score=90.62 Aligned_cols=192 Identities=13% Similarity=0.151 Sum_probs=108.9
Q ss_pred ccccchHHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhcccC-CCCCCEEEEEEecCCCCHHHHHHHHHHHhC
Q 037222 158 RTVVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLES-PTNFDCVIWVVVSKDLRLEKIQDDIGKKIG 236 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 236 (904)
..++|++..++.+..++..+..+.+.++|++|+||||+|+.+++..... ...+ ....+..+.......+ .+....+.
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~ 114 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKS-RILELNASDERGISIV-REKVKNFA 114 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTT-SEEEECSSSCCCHHHH-TTHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCccccc-ceEEEccccccchHHH-HHHHHHHh
Confidence 4689999999999999987654558999999999999999998875100 0111 1233333332222222 11111111
Q ss_pred -CCCCCCCCCCHHHHHHHHHHHHcCCcEEEEecccccc--cccccccCCCCCCCCCCcEEEEEecchh-hhcc-ccCCce
Q 037222 237 -LSDDSWKNKSFEEKAVDILRSLGEKRFVLLLDDLWER--VDLTKVGVPLPGPQNTTSKVVFATRFID-VCGS-MEADRK 311 (904)
Q Consensus 237 -~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~IivTtR~~~-v~~~-~~~~~~ 311 (904)
.... ..... .....-.+++-++++|++... .....+...+. ......++|++|.... +... ......
T Consensus 115 ~~~~~--~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le-~~~~~~~~il~~~~~~~l~~~l~sR~~~ 186 (353)
T 1sxj_D 115 RLTVS--KPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTME-TYSGVTRFCLICNYVTRIIDPLASQCSK 186 (353)
T ss_dssp HSCCC--CCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHH-HTTTTEEEEEEESCGGGSCHHHHHHSEE
T ss_pred hhccc--ccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHH-hcCCCceEEEEeCchhhCcchhhccCce
Confidence 0000 00000 000001235569999998643 22233333332 2233567777775432 2111 122347
Q ss_pred eecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHHHHH
Q 037222 312 FLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLALITI 362 (904)
Q Consensus 312 ~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 362 (904)
+.+.+++.++....+.+.+.......+ .+..+.|++.++|.|-.+..+
T Consensus 187 i~~~~~~~~~~~~~l~~~~~~~~~~i~---~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 187 FRFKALDASNAIDRLRFISEQENVKCD---DGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHTSSCHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 899999999999999887643321222 456788999999998765443
No 174
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.18 E-value=3.9e-05 Score=79.79 Aligned_cols=195 Identities=16% Similarity=0.123 Sum_probs=101.1
Q ss_pred cccchHHHHHHHHH-------HHh---cCCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHH
Q 037222 159 TVVGLQSQLEQVWR-------CLV---EESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQ 228 (904)
Q Consensus 159 ~~vGr~~~~~~l~~-------~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~ 228 (904)
.++|.+..+++++. .+. ....+.+.|+|++|+|||++|+.+++.. ...| +.+..+...
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~---~~~~---~~i~~~~~~------ 101 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES---NFPF---IKICSPDKM------ 101 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH---TCSE---EEEECGGGC------
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh---CCCE---EEEeCHHHh------
Confidence 46777666666555 332 2345778999999999999999999875 2221 222222100
Q ss_pred HHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEecccccc-----------cc-cccccCCCCC--CCCCCcEEE
Q 037222 229 DDIGKKIGLSDDSWKNKSFEEKAVDILRSLGEKRFVLLLDDLWER-----------VD-LTKVGVPLPG--PQNTTSKVV 294 (904)
Q Consensus 229 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~-----------~~-~~~~~~~l~~--~~~~gs~Ii 294 (904)
.+. . ...........+......++.+|+|||++.. .. ...+...+.. ..+....||
T Consensus 102 ------~g~-~---~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii 171 (272)
T 1d2n_A 102 ------IGF-S---ETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLII 171 (272)
T ss_dssp ------TTC-C---HHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEE
T ss_pred ------cCC-c---hHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEE
Confidence 000 0 0000011122222233467889999998642 01 1222222210 122334567
Q ss_pred EEecchhhhcc---ccC-CceeecccCCH-HHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCc------hhHHHHHH
Q 037222 295 FATRFIDVCGS---MEA-DRKFLVACLSE-KDAWELFREKVGEETLQSHHDIVELAQIVAKECGGL------PLALITIG 363 (904)
Q Consensus 295 vTtR~~~v~~~---~~~-~~~~~l~~L~~-~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl------PLai~~~~ 363 (904)
.||........ ... ...+++++++. ++...++.+... . ..+....|++.+.|. .-++..+-
T Consensus 172 ~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~~-----~---~~~~~~~l~~~~~g~~~~g~ir~l~~~l~ 243 (272)
T 1d2n_A 172 GTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGN-----F---KDKERTTIAQQVKGKKVWIGIKKLLMLIE 243 (272)
T ss_dssp EEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHTC-----S---CHHHHHHHHHHHTTSEEEECHHHHHHHHH
T ss_pred EecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcCC-----C---CHHHHHHHHHHhcCCCccccHHHHHHHHH
Confidence 77776644222 122 35688999988 666666655321 1 134567888888883 33333333
Q ss_pred HHHhcCCCHHHHHHHHHHHhh
Q 037222 364 RAMACKRTAEEWIHAVEVLRR 384 (904)
Q Consensus 364 ~~l~~~~~~~~w~~~~~~l~~ 384 (904)
.+.. ......+..++..+..
T Consensus 244 ~a~~-~~~~~~~~~~~~~l~~ 263 (272)
T 1d2n_A 244 MSLQ-MDPEYRVRKFLALLRE 263 (272)
T ss_dssp HHTT-SCGGGHHHHHHHHHHH
T ss_pred HHhh-hchHHHHHHHHHHHHH
Confidence 2222 2344556665555443
No 175
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.18 E-value=4.2e-06 Score=89.15 Aligned_cols=154 Identities=14% Similarity=0.143 Sum_probs=86.6
Q ss_pred cccchHHHHHHHHHHHh---------------cCCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCC
Q 037222 159 TVVGLQSQLEQVWRCLV---------------EESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLR 223 (904)
Q Consensus 159 ~~vGr~~~~~~l~~~L~---------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~ 223 (904)
.++|.+..++.+.+.+. ......+.|+|++|+|||++|+.+++.. .........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l-~~~~~~~~~~~~~~~~~-- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLL-HRLGYVRKGHLVSVTRD-- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHH-HHTTSSSSCCEEEECGG--
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHH-HhcCCcCCCcEEEEcHH--
Confidence 47899888888876653 2334578999999999999999888776 22122111112333210
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEecccccc-----------cccccccCCCCCCCCCCcE
Q 037222 224 LEKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSLGEKRFVLLLDDLWER-----------VDLTKVGVPLPGPQNTTSK 292 (904)
Q Consensus 224 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~-----------~~~~~~~~~l~~~~~~gs~ 292 (904)
.+... ... ........+.... +.-+|++|+++.- .....+...+. ....+..
T Consensus 109 ----------~l~~~---~~g-~~~~~~~~~~~~~--~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~-~~~~~~~ 171 (309)
T 3syl_A 109 ----------DLVGQ---YIG-HTAPKTKEVLKRA--MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVME-NNRDDLV 171 (309)
T ss_dssp ----------GTCCS---STT-CHHHHHHHHHHHH--TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHH-HCTTTCE
T ss_pred ----------Hhhhh---ccc-ccHHHHHHHHHhc--CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHh-cCCCCEE
Confidence 11000 011 1111222222222 3459999999732 12233333333 3344667
Q ss_pred EEEEecchhhhc-------ccc-CCceeecccCCHHHHHHHHHHhhCc
Q 037222 293 VVFATRFIDVCG-------SME-ADRKFLVACLSEKDAWELFREKVGE 332 (904)
Q Consensus 293 IivTtR~~~v~~-------~~~-~~~~~~l~~L~~~e~~~Lf~~~~~~ 332 (904)
||.||....... ... ....+.+++++.++-..++...+..
T Consensus 172 ~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~ 219 (309)
T 3syl_A 172 VILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDD 219 (309)
T ss_dssp EEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHH
T ss_pred EEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHH
Confidence 888886533211 011 1267899999999999999887743
No 176
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.17 E-value=4.7e-06 Score=87.60 Aligned_cols=176 Identities=20% Similarity=0.225 Sum_probs=101.6
Q ss_pred ccccchHHHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCH
Q 037222 158 RTVVGLQSQLEQVWRCLVE-------------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRL 224 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 224 (904)
..++|.+..++++.+.+.. ...+.+.|+|++|+||||||+.+++.. ... .+.+..+.-.
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~---~~~---~~~v~~~~~~-- 88 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET---NAT---FIRVVGSELV-- 88 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT---TCE---EEEEEGGGGC--
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCC---EEEEehHHHH--
Confidence 5689999999999887742 245678999999999999999999876 221 2333322110
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHH-HHHHHcCCcEEEEeccccccc------------c----cccccCCCCC-C
Q 037222 225 EKIQDDIGKKIGLSDDSWKNKSFEEKAVD-ILRSLGEKRFVLLLDDLWERV------------D----LTKVGVPLPG-P 286 (904)
Q Consensus 225 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~-l~~~l~~~r~LlVlDdv~~~~------------~----~~~~~~~l~~-~ 286 (904)
.. ... ........ +......++.+|+|||++... . +..+...+.+ .
T Consensus 89 ------------~~---~~~-~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 152 (285)
T 3h4m_A 89 ------------KK---FIG-EGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFD 152 (285)
T ss_dssp ------------CC---STT-HHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTC
T ss_pred ------------Hh---ccc-hHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCC
Confidence 00 011 11222222 223334567899999996420 0 1111111100 1
Q ss_pred CCCCcEEEEEecchhhhcc--c---cCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCc-hhHHH
Q 037222 287 QNTTSKVVFATRFIDVCGS--M---EADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGL-PLALI 360 (904)
Q Consensus 287 ~~~gs~IivTtR~~~v~~~--~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl-PLai~ 360 (904)
...+..||.||........ . .-...+.+...+.++..+++...+.......... ...+++.+.|. |-.+.
T Consensus 153 ~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~----~~~l~~~~~g~~~~~i~ 228 (285)
T 3h4m_A 153 ARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVN----LEEIAKMTEGCVGAELK 228 (285)
T ss_dssp SSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHHCTTCCHHHHH
T ss_pred CCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCC----HHHHHHHcCCCCHHHHH
Confidence 2345677788875533211 1 1124688999999999999988876443222223 34667777774 43443
Q ss_pred H
Q 037222 361 T 361 (904)
Q Consensus 361 ~ 361 (904)
.
T Consensus 229 ~ 229 (285)
T 3h4m_A 229 A 229 (285)
T ss_dssp H
T ss_pred H
Confidence 3
No 177
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.14 E-value=4.4e-05 Score=78.95 Aligned_cols=180 Identities=15% Similarity=0.170 Sum_probs=98.5
Q ss_pred ccccchHHHHHHHHHHHh---c---------CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHH
Q 037222 158 RTVVGLQSQLEQVWRCLV---E---------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 225 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 225 (904)
.+++|.+..++.+.+.+. . ...+.+.|+|++|+|||++|+.+++.. ... .+.+..+.-.+
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~---~~~---~~~~~~~~~~~-- 77 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA---QVP---FLAMAGAEFVE-- 77 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH---TCC---EEEEETTTTSS--
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC---EEEechHHHHh--
Confidence 457899888777766542 1 123567899999999999999999876 222 23344332110
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEecccccc-------------cc----cccccCCCCC-CC
Q 037222 226 KIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSLGEKRFVLLLDDLWER-------------VD----LTKVGVPLPG-PQ 287 (904)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~-------------~~----~~~~~~~l~~-~~ 287 (904)
.+...........+.......+.+|++||++.- .. +..+...+.+ ..
T Consensus 78 ---------------~~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 142 (262)
T 2qz4_A 78 ---------------VIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT 142 (262)
T ss_dssp ---------------SSTTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT
T ss_pred ---------------hccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC
Confidence 001111122222222333456789999999742 01 1112111110 12
Q ss_pred CCCcEEEEEecchhhh-ccc-c---CCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchh-HHHH
Q 037222 288 NTTSKVVFATRFIDVC-GSM-E---ADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPL-ALIT 361 (904)
Q Consensus 288 ~~gs~IivTtR~~~v~-~~~-~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~ 361 (904)
..+..||.||...... ... . -...+.++..+.++-.+++...+..... ..........+++.+.|.+- .+..
T Consensus 143 ~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~--~~~~~~~~~~l~~~~~g~~~~~l~~ 220 (262)
T 2qz4_A 143 TDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL--TQSSTFYSQRLAELTPGFSGADIAN 220 (262)
T ss_dssp TCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC--CBTHHHHHHHHHHTCTTCCHHHHHH
T ss_pred CCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC--CcchhhHHHHHHHHCCCCCHHHHHH
Confidence 2355667777654321 111 1 1256788999999999999887743321 12222234678888888754 4443
Q ss_pred H
Q 037222 362 I 362 (904)
Q Consensus 362 ~ 362 (904)
+
T Consensus 221 l 221 (262)
T 2qz4_A 221 I 221 (262)
T ss_dssp H
T ss_pred H
Confidence 3
No 178
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.12 E-value=1.1e-05 Score=87.85 Aligned_cols=195 Identities=9% Similarity=0.078 Sum_probs=104.1
Q ss_pred ccccchHHHHHHHHHHH-hcCCceEEEEEcCCCCcHHHHHHHHHHhcccCC-C--CCCE--------------------E
Q 037222 158 RTVVGLQSQLEQVWRCL-VEESVGIIGLYGMGGVGKTTLLTHINNKFLESP-T--NFDC--------------------V 213 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L-~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~--~f~~--------------------~ 213 (904)
..++|.+..++.+.+++ ..+....+.|+|+.|+||||+|+.+++...... + .++. .
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYH 93 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSE
T ss_pred HHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccce
Confidence 45799999999999888 655444489999999999999999988531111 0 0110 1
Q ss_pred EEEEecCCC-CHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEecccccc--cccccccCCCCCCCCCC
Q 037222 214 IWVVVSKDL-RLEKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSLGEKRFVLLLDDLWER--VDLTKVGVPLPGPQNTT 290 (904)
Q Consensus 214 ~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~--~~~~~~~~~l~~~~~~g 290 (904)
+.+..+... ......+++++.+..... ..... .+ ..+.+++-++|+|++..- .....+...+. ....+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~-~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~le-~~~~~ 164 (354)
T 1sxj_E 94 LEITPSDMGNNDRIVIQELLKEVAQMEQ------VDFQD-SK-DGLAHRYKCVIINEANSLTKDAQAALRRTME-KYSKN 164 (354)
T ss_dssp EEECCC----CCHHHHHHHHHHHTTTTC--------------------CCEEEEEECTTSSCHHHHHHHHHHHH-HSTTT
T ss_pred EEecHhhcCCcchHHHHHHHHHHHHhcc------ccccc-cc-cccCCCCeEEEEeCccccCHHHHHHHHHHHH-hhcCC
Confidence 111111100 000012222222211100 00000 00 002346779999999752 11222322222 12235
Q ss_pred cEEEEEecchh-hhc-cccCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHHHHHH
Q 037222 291 SKVVFATRFID-VCG-SMEADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLALITIG 363 (904)
Q Consensus 291 s~IivTtR~~~-v~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 363 (904)
..+|++|.... +.. .......+++.+++.++....+.+.+.......+. .+....|++.++|.+-.+..+.
T Consensus 165 ~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 165 IRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLET--KDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp EEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECC--SHHHHHHHHHHTTCHHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCc--HHHHHHHHHHcCCCHHHHHHHH
Confidence 67777776532 221 12234689999999999999998877433211110 2456788899999887654443
No 179
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.08 E-value=0.00041 Score=74.60 Aligned_cols=171 Identities=13% Similarity=0.075 Sum_probs=99.5
Q ss_pred ccccchHHHHHHHHHHHhc-----CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHH
Q 037222 158 RTVVGLQSQLEQVWRCLVE-----ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIG 232 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 232 (904)
..++|++..++++..++.. .....|.|+|++|+|||++|+.+++.. ...| +.+..+.......
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~---~~~~---~~~~~~~~~~~~~------ 96 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM---SANI---KTTAAPMIEKSGD------ 96 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT---TCCE---EEEEGGGCCSHHH------
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh---CCCe---EEecchhccchhH------
Confidence 4689999999999888864 344568999999999999999998875 2222 2333221111111
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEeccccccc--ccccccCCCCC-----------------CCCCCcEE
Q 037222 233 KKIGLSDDSWKNKSFEEKAVDILRSLGEKRFVLLLDDLWERV--DLTKVGVPLPG-----------------PQNTTSKV 293 (904)
Q Consensus 233 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~--~~~~~~~~l~~-----------------~~~~gs~I 293 (904)
....+.. ..+.-+|+||++.... ....+...+.. ...++..+
T Consensus 97 -----------------~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (338)
T 3pfi_A 97 -----------------LAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTL 157 (338)
T ss_dssp -----------------HHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEE
T ss_pred -----------------HHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEE
Confidence 1111111 2355678888886421 11111100000 01113566
Q ss_pred EEEecchhhhc--cccC-CceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHHHHH
Q 037222 294 VFATRFIDVCG--SMEA-DRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLALITI 362 (904)
Q Consensus 294 ivTtR~~~v~~--~~~~-~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 362 (904)
|.||....... .... ...+.+.+++.++...++.+.+..... .--.+..+.|++.+.|.|-.+..+
T Consensus 158 i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~---~~~~~~~~~l~~~~~G~~r~l~~~ 226 (338)
T 3pfi_A 158 IGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK---TCEEKAALEIAKRSRSTPRIALRL 226 (338)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC---EECHHHHHHHHHTTTTCHHHHHHH
T ss_pred EEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHCcCHHHHHHH
Confidence 66666533211 1112 367899999999999999887753221 112456678888999998555443
No 180
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.04 E-value=4e-06 Score=90.69 Aligned_cols=42 Identities=24% Similarity=0.347 Sum_probs=23.3
Q ss_pred cchhhhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCC
Q 037222 604 LPEELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGY 649 (904)
Q Consensus 604 Lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~ 649 (904)
++..+..+++|+.|+|++|..+ .+|. + .+++|++|++..|.+
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~--~-~~~~L~~L~L~~~~l 205 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK--K-PRPNLKSLEIISGGL 205 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS--C-BCTTCSEEEEECSBC
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc--c-cCCCCcEEEEecCCC
Confidence 4444556666777777665222 3333 3 266677777765543
No 181
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.04 E-value=3.1e-06 Score=80.16 Aligned_cols=37 Identities=32% Similarity=0.449 Sum_probs=17.1
Q ss_pred CccEEeEeccCCCCc--CcccccCCCccEEeEecCccch
Q 037222 763 SLHRVTIFSCGKLKD--VTFLVFAPNLKSLELLQCDAME 799 (904)
Q Consensus 763 ~L~~L~L~~c~~l~~--l~~l~~l~~L~~L~L~~c~~l~ 799 (904)
+|++|+|++|+++++ +..+..+++|++|+|++|+.++
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCC
T ss_pred CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCC
Confidence 455555555544443 2223444555555555554444
No 182
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.03 E-value=0.00025 Score=75.42 Aligned_cols=180 Identities=16% Similarity=0.196 Sum_probs=102.4
Q ss_pred ccccchHHHHHHHHHHHhc------------CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHH
Q 037222 158 RTVVGLQSQLEQVWRCLVE------------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 225 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 225 (904)
.+++|.+..++.|.+.+.- ...+.|.++|++|+|||+||+.+++.. . .. ..+.+..+.-.+
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~-~-~~---~~~~i~~~~l~~-- 84 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA-N-NS---TFFSISSSDLVS-- 84 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT-T-SC---EEEEEECCSSCC--
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc-C-CC---cEEEEEhHHHHh--
Confidence 4688999988888877631 134678899999999999999999875 1 11 223333332110
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHH-cCCcEEEEeccccccc----c---------cccccCCCCC--CCCC
Q 037222 226 KIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSL-GEKRFVLLLDDLWERV----D---------LTKVGVPLPG--PQNT 289 (904)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~r~LlVlDdv~~~~----~---------~~~~~~~l~~--~~~~ 289 (904)
.+.... +.....+.... ..++.+|++|+++... . ...+...+.+ ....
T Consensus 85 ---------------~~~g~~-~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 148 (322)
T 1xwi_A 85 ---------------KWLGES-EKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDND 148 (322)
T ss_dssp ---------------SSCCSC-HHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCT
T ss_pred ---------------hhhhHH-HHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCC
Confidence 011122 22333333333 4678899999996421 0 0111111110 1234
Q ss_pred CcEEEEEecchhhhc-c-c-cCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCc-hhHHHHHH
Q 037222 290 TSKVVFATRFIDVCG-S-M-EADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGL-PLALITIG 363 (904)
Q Consensus 290 gs~IivTtR~~~v~~-~-~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl-PLai~~~~ 363 (904)
+..||.||....... . . .-...+.+...+.++-.+++...+....... -......|++.+.|. +-.|..+.
T Consensus 149 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l---~~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 149 GILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSL---TEADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp TEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCC---CHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred CEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 455666665443211 1 1 1235678888999999999988775432111 134567888999887 44455444
No 183
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.01 E-value=0.0001 Score=79.90 Aligned_cols=179 Identities=14% Similarity=0.105 Sum_probs=102.5
Q ss_pred ccccchHHHHHHHHHHHhc------------CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHH
Q 037222 158 RTVVGLQSQLEQVWRCLVE------------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 225 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 225 (904)
..++|.+..++.+.+.+.. ...+.|.|+|++|+|||+||+.+++.. .. ..+.+.++.-..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~---~~~~i~~~~l~~-- 155 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS---GA---TFFSISASSLTS-- 155 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT---TC---EEEEEEGGGGCC--
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc---CC---eEEEEehHHhhc--
Confidence 4689999999998887742 245678999999999999999999875 21 234444432110
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHH-cCCcEEEEeccccccc-------------ccccccCCCCC---CCC
Q 037222 226 KIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSL-GEKRFVLLLDDLWERV-------------DLTKVGVPLPG---PQN 288 (904)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~r~LlVlDdv~~~~-------------~~~~~~~~l~~---~~~ 288 (904)
. +. .........+.... ..++.+|+||+++... ....+...+.+ ...
T Consensus 156 ------------~---~~-g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 219 (357)
T 3d8b_A 156 ------------K---WV-GEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSE 219 (357)
T ss_dssp ------------S---ST-THHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CC
T ss_pred ------------c---cc-chHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCC
Confidence 0 00 11122222233322 4567899999995320 01122111110 112
Q ss_pred CCcEEEEEecchhh-hccc--cCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCc-hhHHHHHH
Q 037222 289 TTSKVVFATRFIDV-CGSM--EADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGL-PLALITIG 363 (904)
Q Consensus 289 ~gs~IivTtR~~~v-~~~~--~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl-PLai~~~~ 363 (904)
.+..||.||..... .... .-...+.+...+.++..+++...+....... ..+....|++.+.|. +-.+..+.
T Consensus 220 ~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l---~~~~l~~la~~t~G~s~~dl~~l~ 295 (357)
T 3d8b_A 220 DRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCL---SEEEIEQIVQQSDAFSGADMTQLC 295 (357)
T ss_dssp CCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCC---CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCc---cHHHHHHHHHHcCCCCHHHHHHHH
Confidence 34556667765322 1111 1224678888999999999887764322111 134567888999884 55555544
No 184
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.01 E-value=6.6e-05 Score=80.57 Aligned_cols=171 Identities=14% Similarity=0.096 Sum_probs=101.8
Q ss_pred hHHHHHHHHHHHhcCC-ceEEEEEcCCCCcHHHHHHHHHHhcccCC-------------------CCCCEEEEEEec---
Q 037222 163 LQSQLEQVWRCLVEES-VGIIGLYGMGGVGKTTLLTHINNKFLESP-------------------TNFDCVIWVVVS--- 219 (904)
Q Consensus 163 r~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~~f~~~~wv~vs--- 219 (904)
.+...+.+.+.+..+. .+.+.++|+.|+||||+|+.+++...... .++|. .++...
T Consensus 7 ~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~-~~~~~~~~~ 85 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDY-YTLAPEKGK 85 (334)
T ss_dssp GHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTE-EEECCCTTC
T ss_pred hHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEEeccccC
Confidence 3556777777777665 45789999999999999999988762111 11332 222221
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEecccccc--cccccccCCCCCCCCCCcEEEEEe
Q 037222 220 KDLRLEKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSLGEKRFVLLLDDLWER--VDLTKVGVPLPGPQNTTSKVVFAT 297 (904)
Q Consensus 220 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~IivTt 297 (904)
....+++ .+++.+.+.... ..+++-++|+|+++.. .....+...+. ....++.+|++|
T Consensus 86 ~~~~i~~-ir~l~~~~~~~~------------------~~~~~kvviIdead~l~~~a~naLLk~lE-ep~~~~~~Il~t 145 (334)
T 1a5t_A 86 NTLGVDA-VREVTEKLNEHA------------------RLGGAKVVWVTDAALLTDAAANALLKTLE-EPPAETWFFLAT 145 (334)
T ss_dssp SSBCHHH-HHHHHHHTTSCC------------------TTSSCEEEEESCGGGBCHHHHHHHHHHHT-SCCTTEEEEEEE
T ss_pred CCCCHHH-HHHHHHHHhhcc------------------ccCCcEEEEECchhhcCHHHHHHHHHHhc-CCCCCeEEEEEe
Confidence 1111111 122222221110 1256789999999753 22333433343 333466777777
Q ss_pred cchh-hh-ccccCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHHHHH
Q 037222 298 RFID-VC-GSMEADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLALITI 362 (904)
Q Consensus 298 R~~~-v~-~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 362 (904)
.+.+ +. ........+++.+++.++..+.+.+.... + .+.+..+++.++|.|..+..+
T Consensus 146 ~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~~~-----~---~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 146 REPERLLATLRSRCRLHYLAPPPEQYAVTWLSREVTM-----S---QDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp SCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHCCC-----C---HHHHHHHHHHTTTCHHHHHHT
T ss_pred CChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhcCC-----C---HHHHHHHHHHcCCCHHHHHHH
Confidence 6543 32 22234568999999999999999877511 1 344578999999999766543
No 185
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.00 E-value=3.4e-05 Score=84.30 Aligned_cols=195 Identities=15% Similarity=0.143 Sum_probs=101.2
Q ss_pred ccccchHHHHHH---HHHHHhcCCc--eEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEe----cCCCCHHHHH
Q 037222 158 RTVVGLQSQLEQ---VWRCLVEESV--GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVV----SKDLRLEKIQ 228 (904)
Q Consensus 158 ~~~vGr~~~~~~---l~~~L~~~~~--~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v----s~~~~~~~~~ 228 (904)
..++|++..++. +.+.+..+.. +.+.|+|++|+|||++|+.+++.. . .... .+.+.. +......+.+
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l-~--~~~~-~~~~~~~~~~~~~~~~~~~~ 119 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQAL-G--PDTP-FTAIAGSEIFSLEMSKTEAL 119 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHH-C--SSCC-EEEEEGGGGSCSSSCHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHh-c--ccCC-cccccchhhhhcccchhHHH
Confidence 468999988766 4444554433 588999999999999999999987 2 2111 122222 1223334444
Q ss_pred HHHHHHh-CC--------------------CCC----CC---CCCCHHHHHHHHHHHH-----cCC----cEEEEecccc
Q 037222 229 DDIGKKI-GL--------------------SDD----SW---KNKSFEEKAVDILRSL-----GEK----RFVLLLDDLW 271 (904)
Q Consensus 229 ~~i~~~l-~~--------------------~~~----~~---~~~~~~~~~~~l~~~l-----~~~----r~LlVlDdv~ 271 (904)
.+..... +. ... .. ...........+.... .++ +-+|++|++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~ 199 (368)
T 3uk6_A 120 TQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVH 199 (368)
T ss_dssp HHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGG
T ss_pred HHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcc
Confidence 3333321 00 000 00 0000112222221111 233 3599999997
Q ss_pred cc--cccccccCCCCCCCCCCcEEEEEecc-h------------hh-hccccCCceeecccCCHHHHHHHHHHhhCcccc
Q 037222 272 ER--VDLTKVGVPLPGPQNTTSKVVFATRF-I------------DV-CGSMEADRKFLVACLSEKDAWELFREKVGEETL 335 (904)
Q Consensus 272 ~~--~~~~~~~~~l~~~~~~gs~IivTtR~-~------------~v-~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~ 335 (904)
.. .....+...+. .... ..++++|.. . .+ .........+.+.+++.++...++.+.+.....
T Consensus 200 ~l~~~~~~~L~~~le-~~~~-~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~~ 277 (368)
T 3uk6_A 200 MLDIESFSFLNRALE-SDMA-PVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDV 277 (368)
T ss_dssp GSBHHHHHHHHHHTT-CTTC-CEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTTC
T ss_pred ccChHHHHHHHHHhh-CcCC-CeeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 53 22333333332 2222 234444431 1 11 011122345899999999999999987754321
Q ss_pred CCCccHHHHHHHHHHHhC-CchhHHHH
Q 037222 336 QSHHDIVELAQIVAKECG-GLPLALIT 361 (904)
Q Consensus 336 ~~~~~~~~~~~~i~~~c~-GlPLai~~ 361 (904)
.. -.+....|++.+. |.|-.+..
T Consensus 278 ~~---~~~~l~~l~~~~~~G~~r~~~~ 301 (368)
T 3uk6_A 278 EM---SEDAYTVLTRIGLETSLRYAIQ 301 (368)
T ss_dssp CB---CHHHHHHHHHHHHHSCHHHHHH
T ss_pred CC---CHHHHHHHHHHhcCCCHHHHHH
Confidence 11 2355678888887 77755443
No 186
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.00 E-value=4.4e-05 Score=81.71 Aligned_cols=176 Identities=13% Similarity=0.074 Sum_probs=100.6
Q ss_pred ccccchHHHHHHHHHHHhcCCc-eEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhC
Q 037222 158 RTVVGLQSQLEQVWRCLVEESV-GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIG 236 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 236 (904)
..++|.+..++.+.+++..+.. +++.+.|++|+||||+|+.+++.. . ...+.+..+.. .... ++.++....
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l-~-----~~~~~i~~~~~-~~~~-i~~~~~~~~ 97 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV-N-----ADMMFVNGSDC-KIDF-VRGPLTNFA 97 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT-T-----EEEEEEETTTC-CHHH-HHTHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh-C-----CCEEEEccccc-CHHH-HHHHHHHHH
Confidence 4689999999999999987543 567778889999999999999876 1 12344443321 1221 111111110
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHcCCcEEEEeccccccc---ccccccCCCCCCCCCCcEEEEEecchhh-hc-cccCCce
Q 037222 237 LSDDSWKNKSFEEKAVDILRSLGEKRFVLLLDDLWERV---DLTKVGVPLPGPQNTTSKVVFATRFIDV-CG-SMEADRK 311 (904)
Q Consensus 237 ~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~---~~~~~~~~l~~~~~~gs~IivTtR~~~v-~~-~~~~~~~ 311 (904)
... ...+++-++++||++.-. ....+...+. ....+.++|+||....- .. .......
T Consensus 98 ~~~-----------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le-~~~~~~~iI~~~n~~~~l~~~l~sR~~~ 159 (324)
T 3u61_B 98 SAA-----------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFME-AYSSNCSIIITANNIDGIIKPLQSRCRV 159 (324)
T ss_dssp HBC-----------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHH-HHGGGCEEEEEESSGGGSCTTHHHHSEE
T ss_pred hhc-----------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHH-hCCCCcEEEEEeCCccccCHHHHhhCcE
Confidence 000 012367899999997543 2333333222 22245678888876432 11 1122357
Q ss_pred eecccCCHHHHHHHH-------HHhhCccccCCCccHHHHHHHHHHHhCCchhHHHH
Q 037222 312 FLVACLSEKDAWELF-------REKVGEETLQSHHDIVELAQIVAKECGGLPLALIT 361 (904)
Q Consensus 312 ~~l~~L~~~e~~~Lf-------~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 361 (904)
+++++++.++-.+++ .+.+.......++ .+....|++.++|.+-.+..
T Consensus 160 i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~--~~~~~~l~~~~~gd~R~a~~ 214 (324)
T 3u61_B 160 ITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD--MKVVAALVKKNFPDFRKTIG 214 (324)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC--HHHHHHHHHHTCSCTTHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc--HHHHHHHHHhCCCCHHHHHH
Confidence 899999988854433 2222222111111 25667888889887765433
No 187
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.99 E-value=2.3e-06 Score=81.13 Aligned_cols=86 Identities=8% Similarity=0.093 Sum_probs=41.0
Q ss_pred CccEEeEeccCCCCc--CcccccCCCccEEeEecCccchhhcccCcccCCccccCCCCC----CCcccEeeccccccccc
Q 037222 763 SLHRVTIFSCGKLKD--VTFLVFAPNLKSLELLQCDAMEEIISVGEIAETPEMMGHISP----FENLQSLHLSYLPILRS 836 (904)
Q Consensus 763 ~L~~L~L~~c~~l~~--l~~l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~~~~~~~~~----~~~L~~L~L~~~~~L~~ 836 (904)
+|+.|++++|. +++ +..+..+++|++|+|++|..+++-.- ..+.. .++|+.|+|++|+++++
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL-----------~~L~~~~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCL-----------ERLSQLENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHH-----------HHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHH-----------HHHHhcccccCCCCEEEcCCCCcCCH
Confidence 45555555553 332 22344555555555555555444311 00111 23566666666655554
Q ss_pred ccC-CCCCCCCcceEeeccCCCCCC
Q 037222 837 IYW-KPLPFTHLKKMEVRRCDQLRR 860 (904)
Q Consensus 837 i~~-~~~~~~~L~~L~i~~C~~L~~ 860 (904)
-.. ....+++|++|++++||+++.
T Consensus 130 ~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 130 KGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHHHHhcCCCCCEEECCCCCCCCc
Confidence 211 112356666666666666554
No 188
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.97 E-value=8.1e-05 Score=82.09 Aligned_cols=278 Identities=18% Similarity=0.133 Sum_probs=155.6
Q ss_pred cceeEEEeeccccccccC--CCCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCC-----------C-------
Q 037222 517 ENVTRLSLMQNQIKILSE--VPTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCG-----------N------- 576 (904)
Q Consensus 517 ~~~r~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~-----------~------- 576 (904)
..++.+.+.. .+..+.. +..|++|+.+.+. + .+..++...|.++..|+.+.+...- .
T Consensus 71 ~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp-~-~l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~~ 147 (394)
T 4fs7_A 71 RKVTEIKIPS-TVREIGEFAFENCSKLEIINIP-D-SVKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITIP 147 (394)
T ss_dssp TTEEEEECCT-TCCEECTTTTTTCTTCCEECCC-T-TCCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEECC
T ss_pred CCceEEEeCC-CccCcchhHhhCCCCCcEEEeC-C-CceEccchhhcccccchhhcccCceeeecceeeecccccccccC
Confidence 4677787763 3555543 5789999999997 3 3777888888888888776654320 0
Q ss_pred --cccccCccccccccCcEeecccCcccccch-hhhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCCcccc
Q 037222 577 --FTFQLPLGMSKLGSLELFDISRTEIQELPE-ELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYECFH 653 (904)
Q Consensus 577 --i~~~lp~~i~~L~~L~~L~l~~~~i~~Lp~-~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~~~~ 653 (904)
+...-...+.++.+|+.+.+..+ +..++. .+..+.+|+.+++..+ ++.++...+.++..|+.+.+..+.... +
T Consensus 148 ~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~~~~i-~ 223 (394)
T 4fs7_A 148 EGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNSLYYL-G 223 (394)
T ss_dssp TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTTCCEE-C
T ss_pred ccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCCceEe-e
Confidence 11011234567889999999765 344544 4678899999999765 678887778899999988876542211 0
Q ss_pred cCCCCccccCCCccchHhhcCCCCCcEEEEEecchhhHHHhhhcccccccceeeEecccCCCcchhhhhhhcccCccCce
Q 037222 654 EAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQIFLSSNKLKSCIRSLFLQLAGDTKSIIDAAAFADLNHLNEL 733 (904)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~L~~L 733 (904)
.......+|+.+.+.... ..+.. .....+..|+.+.+..... ... ...+..+..|+.+
T Consensus 224 ----------------~~~~~~~~l~~i~ip~~~-~~i~~--~~f~~~~~l~~~~~~~~~~--~i~-~~~F~~~~~l~~~ 281 (394)
T 4fs7_A 224 ----------------DFALSKTGVKNIIIPDSF-TELGK--SVFYGCTDLESISIQNNKL--RIG-GSLFYNCSGLKKV 281 (394)
T ss_dssp ----------------TTTTTTCCCCEEEECTTC-CEECS--STTTTCSSCCEEEECCTTC--EEC-SCTTTTCTTCCEE
T ss_pred ----------------hhhcccCCCceEEECCCc-eeccc--ccccccccceeEEcCCCcc--eee-cccccccccccee
Confidence 001123455555543110 00000 0011134556655543211 111 1244556666665
Q ss_pred eecccCCcceeeeccccccccccCCcccCCccEEeEeccCCCCcCcc--cccCCCccEEeEecCccchhhcccCcccCCc
Q 037222 734 YIYEGIELEELKIDYTEIVRKRREPFVFRSLHRVTIFSCGKLKDVTF--LVFAPNLKSLELLQCDAMEEIISVGEIAETP 811 (904)
Q Consensus 734 ~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~c~~l~~~~~~~~~~~~~ 811 (904)
...... + +... ...+.+|+.+.+.+. ++.++. +..+.+|+.+.|.+ .++.+..
T Consensus 282 ~~~~~~----i-~~~~--------F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~-------- 336 (394)
T 4fs7_A 282 IYGSVI----V-PEKT--------FYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPY--LVEEIGK-------- 336 (394)
T ss_dssp EECSSE----E-CTTT--------TTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCT--TCCEECT--------
T ss_pred ccCcee----e-cccc--------ccccccccccccccc--cceechhhhcCCCCCCEEEeCC--cccEEhH--------
Confidence 543321 1 1111 124667777777543 444432 56677777777753 2444322
Q ss_pred cccCCCCCCCcccEeecccccccccccCC-CCCCCCcceEeec
Q 037222 812 EMMGHISPFENLQSLHLSYLPILRSIYWK-PLPFTHLKKMEVR 853 (904)
Q Consensus 812 ~~~~~~~~~~~L~~L~L~~~~~L~~i~~~-~~~~~~L~~L~i~ 853 (904)
..+.++.+|+.+.|.. +++.+... ...|++|+++.+.
T Consensus 337 ---~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 337 ---RSFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp ---TTTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEE
T ss_pred ---HhccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEEC
Confidence 1456677777777753 25555432 2346677777664
No 189
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.97 E-value=4.5e-05 Score=82.27 Aligned_cols=173 Identities=13% Similarity=0.139 Sum_probs=101.2
Q ss_pred ccccchHHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCC-EEEEEEecCCCCHHHHHHHHHHHhC
Q 037222 158 RTVVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFD-CVIWVVVSKDLRLEKIQDDIGKKIG 236 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~vs~~~~~~~~~~~i~~~l~ 236 (904)
..++|.+..++.+..++..++.+.+.++|+.|+||||+|+.+++.. . ...+. ....+..+.....
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l-~-~~~~~~~~~~~~~~~~~~~------------ 90 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI-Y-GKNYSNMVLELNASDDRGI------------ 90 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH-H-TTSHHHHEEEECTTSCCSH------------
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH-c-CCCccceEEEEcCcccccH------------
Confidence 4568998889999888887765558999999999999999999876 1 11111 1122222211111
Q ss_pred CCCCCCCCCCHHHHHHHHHHHH------cCCcEEEEecccccc--cccccccCCCCCCCCCCcEEEEEecchh-hhc-cc
Q 037222 237 LSDDSWKNKSFEEKAVDILRSL------GEKRFVLLLDDLWER--VDLTKVGVPLPGPQNTTSKVVFATRFID-VCG-SM 306 (904)
Q Consensus 237 ~~~~~~~~~~~~~~~~~l~~~l------~~~r~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~IivTtR~~~-v~~-~~ 306 (904)
+.....+.... .+.+-++|+|+++.. .....+...+. ......++|++|.... +.. ..
T Consensus 91 -----------~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le-~~~~~~~~il~~n~~~~i~~~i~ 158 (340)
T 1sxj_C 91 -----------DVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIE-RYTKNTRFCVLANYAHKLTPALL 158 (340)
T ss_dssp -----------HHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHH-HTTTTEEEEEEESCGGGSCHHHH
T ss_pred -----------HHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHh-cCCCCeEEEEEecCccccchhHH
Confidence 11111121111 234678999999642 22233322222 2223566777765432 211 11
Q ss_pred cCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHH
Q 037222 307 EADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLAL 359 (904)
Q Consensus 307 ~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 359 (904)
.....+.+.+++.++..+.+.+.+.......+ .+..+.|++.++|.+--+
T Consensus 159 sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~i~---~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 159 SQCTRFRFQPLPQEAIERRIANVLVHEKLKLS---PNAEKALIELSNGDMRRV 208 (340)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHHTTTCCBC---HHHHHHHHHHHTTCHHHH
T ss_pred hhceeEeccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 23357899999999999888876632221111 345678889999987643
No 190
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.93 E-value=0.00015 Score=79.94 Aligned_cols=105 Identities=12% Similarity=0.129 Sum_probs=69.8
Q ss_pred CCCC-CceEEEeecCcccccccchhhcCCCcccEEEeecC--CCcccccC-ccccccccCcEeecccCcccccch-hhhc
Q 037222 536 PTCP-DLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNC--GNFTFQLP-LGMSKLGSLELFDISRTEIQELPE-ELKL 610 (904)
Q Consensus 536 ~~~~-~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~--~~i~~~lp-~~i~~L~~L~~L~l~~~~i~~Lp~-~~~~ 610 (904)
..|. .|+++.+. . .++.++...|.+|.+|+.+.+..+ ..++ .++ ..+..+.+|+.+.+..+ ++.++. .+..
T Consensus 60 ~~~~~~L~sI~iP-~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~ 135 (394)
T 4gt6_A 60 CNYKYVLTSVQIP-D-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEIDSEAFHH 135 (394)
T ss_dssp TTCCSCCCEEEEC-T-TCCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEECTTTTTT
T ss_pred cCCCCcCEEEEEC-C-CeeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceehhhhhhh
Confidence 5553 58888886 2 377888888888888888888764 1344 333 34556777777766543 444443 3566
Q ss_pred CCCCcEeeccccccccccchhhhcCCCCCceeeecc
Q 037222 611 LVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFA 646 (904)
Q Consensus 611 L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~ 646 (904)
+.+|+.+.+... +..++...+..+.+|+.+.+..
T Consensus 136 c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~ 169 (394)
T 4gt6_A 136 CEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPD 169 (394)
T ss_dssp CTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCT
T ss_pred hcccccccccce--eeeecccceecccccccccccc
Confidence 778888888643 5666666677777777777754
No 191
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.91 E-value=0.00036 Score=73.51 Aligned_cols=179 Identities=15% Similarity=0.120 Sum_probs=100.9
Q ss_pred ccccchHHHHHHHHHHHhc------------CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHH
Q 037222 158 RTVVGLQSQLEQVWRCLVE------------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 225 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 225 (904)
..++|.+..++.+.+.+.. ...+.+.|+|++|+||||+|+.+++.. .. ..+.+..+.-..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~---~~---~~~~i~~~~l~~-- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC---SA---TFLNISAASLTS-- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT---TC---EEEEEESTTTSS--
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh---CC---CeEEeeHHHHhh--
Confidence 4689999999998887632 235678999999999999999999876 21 223333322110
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH-HcCCcEEEEecccccccc-------------cccc---cCCCCC-CC
Q 037222 226 KIQDDIGKKIGLSDDSWKNKSFEEKAVDILRS-LGEKRFVLLLDDLWERVD-------------LTKV---GVPLPG-PQ 287 (904)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~~r~LlVlDdv~~~~~-------------~~~~---~~~l~~-~~ 287 (904)
. ...........+... ...++.+|++|++..... ...+ ...++. ..
T Consensus 93 ------------~----~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 156 (297)
T 3b9p_A 93 ------------K----YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPD 156 (297)
T ss_dssp ------------S----SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC----
T ss_pred ------------c----ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCC
Confidence 0 111223333333332 345778999999964210 0011 111110 11
Q ss_pred CCCcEEEEEecchhhhc-cc--cCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchh-HHHHHH
Q 037222 288 NTTSKVVFATRFIDVCG-SM--EADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPL-ALITIG 363 (904)
Q Consensus 288 ~~gs~IivTtR~~~v~~-~~--~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~~ 363 (904)
+.+..||.||....... .. .-...+.+...+.++...++...+....... ..+....+++.+.|.+- ++..+.
T Consensus 157 ~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~---~~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 157 GDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPL---DTEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp --CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCS---CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 23456666776543211 10 1224677778888888888877764322111 13456788889999875 444443
No 192
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.89 E-value=6.1e-05 Score=80.63 Aligned_cols=166 Identities=17% Similarity=0.160 Sum_probs=92.9
Q ss_pred HHHHHHHHhcC--CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCC
Q 037222 167 LEQVWRCLVEE--SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDDSWKN 244 (904)
Q Consensus 167 ~~~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~ 244 (904)
...+..++... ....+.|+|++|+||||||+.+++.. ... .+ ..++++. .++...+...+...
T Consensus 23 ~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~-~~~-~~-~~~~i~~------~~~~~~~~~~~~~~------ 87 (324)
T 1l8q_A 23 YEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEA-KKR-GY-RVIYSSA------DDFAQAMVEHLKKG------ 87 (324)
T ss_dssp HHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHH-HHT-TC-CEEEEEH------HHHHHHHHHHHHHT------
T ss_pred HHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHH-HHC-CC-EEEEEEH------HHHHHHHHHHHHcC------
Confidence 44444544443 34678999999999999999999876 211 22 2455543 33344444333210
Q ss_pred CCHHHHHHHHHHHHcCCcEEEEeccccccc---c-cccccCCCCCCCCCCcEEEEEecchhh---------hccccCCce
Q 037222 245 KSFEEKAVDILRSLGEKRFVLLLDDLWERV---D-LTKVGVPLPGPQNTTSKVVFATRFIDV---------CGSMEADRK 311 (904)
Q Consensus 245 ~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~---~-~~~~~~~l~~~~~~gs~IivTtR~~~v---------~~~~~~~~~ 311 (904)
... .+...+. ++-+|++||+.... . ...+...+......|..||+||....- ...+.....
T Consensus 88 -~~~----~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~ 161 (324)
T 1l8q_A 88 -TIN----EFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGIL 161 (324)
T ss_dssp -CHH----HHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEE
T ss_pred -cHH----HHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceE
Confidence 111 1222222 36789999996532 1 122222221011235678888864321 112223357
Q ss_pred eecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhH
Q 037222 312 FLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLA 358 (904)
Q Consensus 312 ~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLa 358 (904)
+++++ +.++...++.+.+.......+ .+....|++.+ |..-.
T Consensus 162 i~l~~-~~~e~~~il~~~~~~~~~~l~---~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 162 VEIEL-DNKTRFKIIKEKLKEFNLELR---KEVIDYLLENT-KNVRE 203 (324)
T ss_dssp EECCC-CHHHHHHHHHHHHHHTTCCCC---HHHHHHHHHHC-SSHHH
T ss_pred EEeCC-CHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHhC-CCHHH
Confidence 89999 999999999888753322222 34567788888 76543
No 193
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.88 E-value=3.4e-05 Score=83.37 Aligned_cols=57 Identities=19% Similarity=0.116 Sum_probs=24.7
Q ss_pred cccccCcEeecccCcccccchhhhcCCCCcEeeccccccccccchhhhc--CCCCCceeeec
Q 037222 586 SKLGSLELFDISRTEIQELPEELKLLVNLKCLNLRWTSKLIRIPRQLIS--NSSGLRVLRMF 645 (904)
Q Consensus 586 ~~L~~L~~L~l~~~~i~~Lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~--~L~~L~~L~l~ 645 (904)
..+++|+.|+++++.-..+|. + .+++|++|++..| .+..-....+. .+++|++|++.
T Consensus 169 ~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~-~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISG-GLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECS-BCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred hcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecC-CCChHHHHHHHHccCCCCcEEEEe
Confidence 344455555555442112332 2 2555666666544 22211111122 45666666654
No 194
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.86 E-value=0.0001 Score=78.62 Aligned_cols=179 Identities=17% Similarity=0.163 Sum_probs=102.9
Q ss_pred ccccchHHHHHHHHHHHh----------c--CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHH
Q 037222 158 RTVVGLQSQLEQVWRCLV----------E--ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 225 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~----------~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 225 (904)
.+++|.+..++.+.+.+. . ...+-|.++|++|+|||+||+.+++.. ... .+.+..+
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~~---~~~v~~~------ 85 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NST---FFSVSSS------ 85 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH---TCE---EEEEEHH------
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH---CCC---EEEEchH------
Confidence 468999999999988772 1 124568999999999999999999876 222 2333221
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHH-cCCcEEEEecccccccc-------------cccccCCCCC--CCCC
Q 037222 226 KIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSL-GEKRFVLLLDDLWERVD-------------LTKVGVPLPG--PQNT 289 (904)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~r~LlVlDdv~~~~~-------------~~~~~~~l~~--~~~~ 289 (904)
++ ... .....+.....+.... ..++.+|+||+++.-.. ...+...+.+ ....
T Consensus 86 ~l----~~~--------~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 153 (322)
T 3eie_A 86 DL----VSK--------WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 153 (322)
T ss_dssp HH----HTT--------TGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCC
T ss_pred HH----hhc--------ccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCC
Confidence 11 110 0111223333333333 45678999999974211 1111111110 1234
Q ss_pred CcEEEEEecchhhhc-cc--cCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCc-hhHHHHHH
Q 037222 290 TSKVVFATRFIDVCG-SM--EADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGL-PLALITIG 363 (904)
Q Consensus 290 gs~IivTtR~~~v~~-~~--~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl-PLai~~~~ 363 (904)
+..||.||....... .+ .-...+.+...+.++-.+++...+........ ......|++.+.|. +-.|..+.
T Consensus 154 ~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~---~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 154 GVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLT---KEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp CEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCC---HHHHHHHHHTTTTCCHHHHHHHH
T ss_pred ceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 556666776543311 10 12346788889999999999988764331111 23456888888874 44444433
No 195
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.86 E-value=4.1e-05 Score=74.32 Aligned_cols=46 Identities=24% Similarity=0.351 Sum_probs=41.2
Q ss_pred ccccchHHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 158 RTVVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
..++||+.+++.+.+.+.....+.+.|+|++|+||||+|+.+++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999987666778999999999999999998876
No 196
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.83 E-value=0.00013 Score=78.77 Aligned_cols=179 Identities=17% Similarity=0.167 Sum_probs=100.8
Q ss_pred ccccchHHHHHHHHHHHhc------------CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHH
Q 037222 158 RTVVGLQSQLEQVWRCLVE------------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 225 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 225 (904)
.+++|.+..++.|.+.+.. ...+-|.++|++|+|||+||+.+++.. ... .+.+..+
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~---~~~---~~~v~~~------ 118 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NST---FFSVSSS------ 118 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH---TCE---EEEEEHH------
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCC---EEEeeHH------
Confidence 4689999999998887631 123458899999999999999999986 221 2333222
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH-HcCCcEEEEecccccccc-------------cccccCCCCC--CCCC
Q 037222 226 KIQDDIGKKIGLSDDSWKNKSFEEKAVDILRS-LGEKRFVLLLDDLWERVD-------------LTKVGVPLPG--PQNT 289 (904)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-l~~~r~LlVlDdv~~~~~-------------~~~~~~~l~~--~~~~ 289 (904)
++ .... .... +.....+... -..++.+|+||+++.... ...+...+.+ ....
T Consensus 119 ~l----~~~~-------~g~~-~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~ 186 (355)
T 2qp9_X 119 DL----VSKW-------MGES-EKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 186 (355)
T ss_dssp HH----HSCC----------C-HHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---C
T ss_pred HH----hhhh-------cchH-HHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCC
Confidence 21 1110 1112 2223333332 245788999999974210 1111111110 1234
Q ss_pred CcEEEEEecchhhhc-c-c-cCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCc-hhHHHHHH
Q 037222 290 TSKVVFATRFIDVCG-S-M-EADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGL-PLALITIG 363 (904)
Q Consensus 290 gs~IivTtR~~~v~~-~-~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl-PLai~~~~ 363 (904)
+..||.||....... . . .-...+.+...+.++-.+++...+........ ......|++.+.|. +-.|..+.
T Consensus 187 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~---~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 187 GVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLT---KEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp CEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 556666776543211 1 1 12356788899999999999888754321111 33457888999884 44454443
No 197
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.83 E-value=0.00045 Score=72.78 Aligned_cols=174 Identities=17% Similarity=0.202 Sum_probs=99.3
Q ss_pred ccccchHHHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCH
Q 037222 158 RTVVGLQSQLEQVWRCLVE-------------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRL 224 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 224 (904)
.+++|.+..++++.+++.. ...+.|.++|++|+||||||+.+++.. .. ..+.+ +.
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~---~~---~~i~v------~~ 82 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QA---NFISI------KG 82 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT---TC---EEEEE------CH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh---CC---CEEEE------Eh
Confidence 4589999988888877642 245678999999999999999999876 21 12222 22
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEeccccccc------------c----cccccCCCCC-CC
Q 037222 225 EKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSLGEKRFVLLLDDLWERV------------D----LTKVGVPLPG-PQ 287 (904)
Q Consensus 225 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~------------~----~~~~~~~l~~-~~ 287 (904)
.++.... .+.. .......+.......+.+|++|++.... . ...+...+.+ ..
T Consensus 83 ~~l~~~~---~g~~--------~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~ 151 (301)
T 3cf0_A 83 PELLTMW---FGES--------EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 151 (301)
T ss_dssp HHHHHHH---HTTC--------TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT
T ss_pred HHHHhhh---cCch--------HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC
Confidence 3333222 1111 1112222223334578999999996310 0 1112111110 12
Q ss_pred CCCcEEEEEecchhhh-cc-cc---CCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhH
Q 037222 288 NTTSKVVFATRFIDVC-GS-ME---ADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLA 358 (904)
Q Consensus 288 ~~gs~IivTtR~~~v~-~~-~~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLa 358 (904)
..+..||.||...... .. .. -...+.+...+.++-.+++...+..........+ ..+++.+.|.|-+
T Consensus 152 ~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~----~~la~~~~g~sg~ 223 (301)
T 3cf0_A 152 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDL----EFLAKMTNGFSGA 223 (301)
T ss_dssp TSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHTCSSCCHH
T ss_pred CCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchH----HHHHHHcCCCCHH
Confidence 3456777777655432 11 11 2247889999999999998887754332222233 3455667777644
No 198
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.82 E-value=0.00044 Score=75.91 Aligned_cols=178 Identities=12% Similarity=0.118 Sum_probs=98.9
Q ss_pred ccccchHHHHHHHHHHHhc------------CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHH
Q 037222 158 RTVVGLQSQLEQVWRCLVE------------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 225 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 225 (904)
..++|.+..++.+.+++.. ...+-|.|+|++|+|||+||+.+++.. .. ..+.+.++.-..
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~---~~---~~~~v~~~~l~~-- 186 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES---NA---TFFNISAASLTS-- 186 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT---TC---EEEEECSCCC----
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh---cC---cEEEeeHHHhhc--
Confidence 4689999999999888731 234678999999999999999998875 21 223333322110
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHH-cCCcEEEEeccccccc--------c-----cccccCCC---CCCCC
Q 037222 226 KIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSL-GEKRFVLLLDDLWERV--------D-----LTKVGVPL---PGPQN 288 (904)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~r~LlVlDdv~~~~--------~-----~~~~~~~l---~~~~~ 288 (904)
. +.... +.....+.... ...+.+|+||+++... . ...+...+ .....
T Consensus 187 ~---------------~~g~~-~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 250 (389)
T 3vfd_A 187 K---------------YVGEG-EKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGD 250 (389)
T ss_dssp --------------------C-HHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC----
T ss_pred c---------------ccchH-HHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCC
Confidence 0 00111 12222233222 4466899999996420 0 01111111 10112
Q ss_pred CCcEEEEEecchhhh-cc-ccC-CceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchh-HHHHH
Q 037222 289 TTSKVVFATRFIDVC-GS-MEA-DRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPL-ALITI 362 (904)
Q Consensus 289 ~gs~IivTtR~~~v~-~~-~~~-~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~ 362 (904)
....||.||...... .. ... ...+.+...+.++...++...+....... ..+....|++.+.|..- ++..+
T Consensus 251 ~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l---~~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 251 DRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPL---TQKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp -CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCS---CHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHcCCCCHHHHHHH
Confidence 334566666543321 11 112 24678899999999999988775432111 13456788899988654 44444
No 199
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.80 E-value=0.00056 Score=76.26 Aligned_cols=181 Identities=17% Similarity=0.173 Sum_probs=101.3
Q ss_pred ccccchHHHHHHHHHHHhc------------CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHH
Q 037222 158 RTVVGLQSQLEQVWRCLVE------------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 225 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 225 (904)
.+++|.+..++.+.+.+.. ...+.|.++|++|+|||+||+.+++.. . .. -++.++..
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~-~-~~-----~~~~v~~~---- 202 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA-N-NS-----TFFSISSS---- 202 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC-C-SS-----EEEEECCC----
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc-C-CC-----CEEEEeHH----
Confidence 4689999999988887631 234678999999999999999999875 1 11 23333322
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEeccccccc-------------ccccccCCCCC--CCCCC
Q 037222 226 KIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSLGEKRFVLLLDDLWERV-------------DLTKVGVPLPG--PQNTT 290 (904)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~-------------~~~~~~~~l~~--~~~~g 290 (904)
.+.... .+. .......... ..-..++.+|+||+++... ....+...+.+ ....+
T Consensus 203 ~l~~~~---~g~-----~~~~~~~~f~---~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~ 271 (444)
T 2zan_A 203 DLVSKW---LGE-----SEKLVKNLFQ---LARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG 271 (444)
T ss_dssp -----------------CCCTHHHHHH---HHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSS
T ss_pred HHHhhh---cch-----HHHHHHHHHH---HHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCC
Confidence 111100 110 1111222221 1224578899999997420 01122222221 12345
Q ss_pred cEEEEEecchhhhcc--c-cCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCc-hhHHHHHH
Q 037222 291 SKVVFATRFIDVCGS--M-EADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGL-PLALITIG 363 (904)
Q Consensus 291 s~IivTtR~~~v~~~--~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl-PLai~~~~ 363 (904)
..||.||........ . .-...+.+...+.++...+|...+....... -......|++.+.|. +-.|..+.
T Consensus 272 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l---~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 272 ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSL---TEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp CEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEEC---CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 667777765433111 1 1224677888888999999988875432111 124456888899885 44444443
No 200
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.70 E-value=0.00024 Score=79.85 Aligned_cols=149 Identities=13% Similarity=0.094 Sum_probs=83.1
Q ss_pred ccccchHHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhcccCCC---CC-CE-EEEEEecCCCCHHHHHHHHH
Q 037222 158 RTVVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPT---NF-DC-VIWVVVSKDLRLEKIQDDIG 232 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---~f-~~-~~wv~vs~~~~~~~~~~~i~ 232 (904)
..++||+.++.+++..+......-+.++|++|+|||++|+.++... .... .. +. .+.+.++
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l-~~~~~p~~l~~~~~~~l~~~------------- 245 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI-INNEVPEILRDKRVMTLDMG------------- 245 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH-HSSCSCTTTSSCCEECC----------------
T ss_pred CCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHH-HhCCCChhhcCCeEEEeeCC-------------
Confidence 3589999999999999976655667899999999999999999886 2111 00 11 1222222
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEecccccccccccccCCCCCCCCCCcEEEEEecchhhh-------cc
Q 037222 233 KKIGLSDDSWKNKSFEEKAVDILRSLGEKRFVLLLDDLWERVDLTKVGVPLPGPQNTTSKVVFATRFIDVC-------GS 305 (904)
Q Consensus 233 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~~~~~l~~~~~~gs~IivTtR~~~v~-------~~ 305 (904)
+..... ...... ..+...-..++.++++| ........+...+. ....++|.||...... ..
T Consensus 246 ---~~~~g~-~e~~~~---~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~---~g~v~vI~at~~~e~~~~~~~~~al 313 (468)
T 3pxg_A 246 ---TKYRGE-FEDRLK---KVMDEIRQAGNIILFID--AAIDASNILKPSLA---RGELQCIGATTLDEYRKYIEKDAAL 313 (468)
T ss_dssp -----------CTTHH---HHHHHHHTCCCCEEEEC--C--------CCCTT---SSSCEEEEECCTTTTHHHHTTCSHH
T ss_pred ---ccccch-HHHHHH---HHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc---CCCEEEEecCCHHHHHHHhhcCHHH
Confidence 000000 011111 22222223567889999 11112222333332 2245666666655421 11
Q ss_pred ccCCceeecccCCHHHHHHHHHHhhCc
Q 037222 306 MEADRKFLVACLSEKDAWELFREKVGE 332 (904)
Q Consensus 306 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~ 332 (904)
......+.+++.+.++...++...+..
T Consensus 314 ~~Rf~~i~v~~p~~e~~~~iL~~~~~~ 340 (468)
T 3pxg_A 314 ERRFQPIQVDQPSVDESIQILQGLRDR 340 (468)
T ss_dssp HHSEEEEECCCCCHHHHHHHHHHTTTT
T ss_pred HHhCccceeCCCCHHHHHHHHHHHHHH
Confidence 122346899999999999999877643
No 201
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.70 E-value=0.00013 Score=76.61 Aligned_cols=147 Identities=16% Similarity=0.112 Sum_probs=89.7
Q ss_pred chHHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhcccC-CCCCCEEEEEEecC-CCCHHHHHHHHHHHhCCCC
Q 037222 162 GLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLES-PTNFDCVIWVVVSK-DLRLEKIQDDIGKKIGLSD 239 (904)
Q Consensus 162 Gr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~~f~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~ 239 (904)
|-++.++.+.+.+..+..+...++|+.|+||||+|+.+.+..... ..+.+. .++..+. ...++++ +++.+.+....
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~-~~l~~~~~~~~id~i-r~li~~~~~~p 78 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDV-LEIDPEGENIGIDDI-RTIKDFLNYSP 78 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTE-EEECCSSSCBCHHHH-HHHHHHHTSCC
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCE-EEEcCCcCCCCHHHH-HHHHHHHhhcc
Confidence 345567777888877667889999999999999999998753011 124443 4444332 2233332 33444443211
Q ss_pred CCCCCCCHHHHHHHHHHHHcCCcEEEEecccccc--cccccccCCCCCCCCCCcEEEEEecch-hhhccccCCceeeccc
Q 037222 240 DSWKNKSFEEKAVDILRSLGEKRFVLLLDDLWER--VDLTKVGVPLPGPQNTTSKVVFATRFI-DVCGSMEADRKFLVAC 316 (904)
Q Consensus 240 ~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~IivTtR~~-~v~~~~~~~~~~~l~~ 316 (904)
..+++-++|+|+++.- .....+...+. .....+.+|++|.+. .+......- .+++.+
T Consensus 79 ------------------~~~~~kvviIdead~lt~~a~naLLk~LE-ep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~ 138 (305)
T 2gno_A 79 ------------------ELYTRKYVIVHDCERMTQQAANAFLKALE-EPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVV 138 (305)
T ss_dssp ------------------SSSSSEEEEETTGGGBCHHHHHHTHHHHH-SCCTTEEEEEEESCGGGSCHHHHTT-SEEEEC
T ss_pred ------------------ccCCceEEEeccHHHhCHHHHHHHHHHHh-CCCCCeEEEEEECChHhChHHHHce-eEeCCC
Confidence 1245678999999753 33444444443 334567777776543 443333333 899999
Q ss_pred CCHHHHHHHHHHhh
Q 037222 317 LSEKDAWELFREKV 330 (904)
Q Consensus 317 L~~~e~~~Lf~~~~ 330 (904)
++.++....+.+.+
T Consensus 139 l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 139 NVPKEFRDLVKEKI 152 (305)
T ss_dssp CCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999988876
No 202
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.63 E-value=0.00074 Score=72.63 Aligned_cols=171 Identities=19% Similarity=0.238 Sum_probs=100.0
Q ss_pred ccccchHHHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCH
Q 037222 158 RTVVGLQSQLEQVWRCLVE-------------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRL 224 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 224 (904)
.++.|.++.+++|.+.+.- ...+-|.++|++|+|||.||+++++.. ...| +.|..+.-.+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~---~~~f---~~v~~s~l~s- 220 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT---DCKF---IRVSGAELVQ- 220 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH---TCEE---EEEEGGGGSC-
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh---CCCc---eEEEhHHhhc-
Confidence 4678899888888776531 235668899999999999999999987 2222 3343332110
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHH-cCCcEEEEeccccccc----------c------cccccCCCCC-C
Q 037222 225 EKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSL-GEKRFVLLLDDLWERV----------D------LTKVGVPLPG-P 286 (904)
Q Consensus 225 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~r~LlVlDdv~~~~----------~------~~~~~~~l~~-~ 286 (904)
.+.. ..+..++.+.... ...+.+|++|+++... + ...+...+.+ .
T Consensus 221 ----------------k~vG-ese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 283 (405)
T 4b4t_J 221 ----------------KYIG-EGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFE 283 (405)
T ss_dssp ----------------SSTT-HHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTT
T ss_pred ----------------cccc-hHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccC
Confidence 0111 1223333333333 4578999999997410 0 1111111111 2
Q ss_pred CCCCcEEEEEecchhhhcc--c---cCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCch
Q 037222 287 QNTTSKVVFATRFIDVCGS--M---EADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLP 356 (904)
Q Consensus 287 ~~~gs~IivTtR~~~v~~~--~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 356 (904)
...+..||.||...+..+. . .-...+++..-+.++-.++|+.+.........-++ ..|++.+.|.-
T Consensus 284 ~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl----~~lA~~t~G~S 354 (405)
T 4b4t_J 284 TSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINL----RKVAEKMNGCS 354 (405)
T ss_dssp CCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCH----HHHHHHCCSCC
T ss_pred CCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCH----HHHHHHCCCCC
Confidence 2345566777766544211 1 22467888888999999999887755432223333 46677787754
No 203
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.61 E-value=5.1e-05 Score=77.64 Aligned_cols=83 Identities=20% Similarity=0.179 Sum_probs=54.3
Q ss_pred cCCCcccEEEeecCCCccc--ccCccccccccCcEeecccCcccccchhhhcCC--CCcEeeccccccccccc------h
Q 037222 561 QFMPSLKVLKISNCGNFTF--QLPLGMSKLGSLELFDISRTEIQELPEELKLLV--NLKCLNLRWTSKLIRIP------R 630 (904)
Q Consensus 561 ~~l~~Lr~L~l~~~~~i~~--~lp~~i~~L~~L~~L~l~~~~i~~Lp~~~~~L~--~L~~L~l~~~~~l~~lp------~ 630 (904)
.++++|+.|+|++| .+++ .+|..+..+++|++|+|++|.|..+ ..+..+. +|++|+|++|+--..+| .
T Consensus 167 ~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 45777888888888 7762 3445566778888888888877766 3344444 78888888774333344 1
Q ss_pred hhhcCCCCCceeeec
Q 037222 631 QLISNSSGLRVLRMF 645 (904)
Q Consensus 631 ~~i~~L~~L~~L~l~ 645 (904)
.++..+++|+.|+-.
T Consensus 245 ~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 245 AIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHCTTCCEESSC
T ss_pred HHHHHCcccCeECCc
Confidence 246677777777643
No 204
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.60 E-value=0.00017 Score=87.64 Aligned_cols=154 Identities=16% Similarity=0.248 Sum_probs=86.0
Q ss_pred ccccchHHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhccc--CCCCC-C-EEEEEEecCCCCHHHHHHHHHH
Q 037222 158 RTVVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLE--SPTNF-D-CVIWVVVSKDLRLEKIQDDIGK 233 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~~f-~-~~~wv~vs~~~~~~~~~~~i~~ 233 (904)
..++||+.++.++++.+.......+.++|.+|+||||+|+.+++.... +.... + ..+++.++.- ..
T Consensus 170 d~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l----------~~ 239 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSL----------LA 239 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---------------
T ss_pred cccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHh----------hc
Confidence 357999999999999998765666789999999999999999987511 00111 2 2344432211 00
Q ss_pred HhCCCCCCCCCCCHHHHHHHHHHHHc--CCcEEEEeccccccc-------ccc---cccCCCCCCCCCCcEEEEEecchh
Q 037222 234 KIGLSDDSWKNKSFEEKAVDILRSLG--EKRFVLLLDDLWERV-------DLT---KVGVPLPGPQNTTSKVVFATRFID 301 (904)
Q Consensus 234 ~l~~~~~~~~~~~~~~~~~~l~~~l~--~~r~LlVlDdv~~~~-------~~~---~~~~~l~~~~~~gs~IivTtR~~~ 301 (904)
+.. .....+.....+...+. +++.+|++|++..-. .++ .+...+. ..+..+|.||....
T Consensus 240 --g~~----~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~---~~~i~~I~at~~~~ 310 (854)
T 1qvr_A 240 --GAK----YRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA---RGELRLIGATTLDE 310 (854)
T ss_dssp ------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHH---TTCCCEEEEECHHH
T ss_pred --cCc----cchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh---CCCeEEEEecCchH
Confidence 000 11233344444444443 368899999997531 021 1222221 12345666655443
Q ss_pred h------hccccCCceeecccCCHHHHHHHHHHhh
Q 037222 302 V------CGSMEADRKFLVACLSEKDAWELFREKV 330 (904)
Q Consensus 302 v------~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 330 (904)
. .........+.+++++.++..+++....
T Consensus 311 ~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 311 YREIEKDPALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp HHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred HhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 2 1111223468999999999999987554
No 205
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.59 E-value=0.00084 Score=73.45 Aligned_cols=171 Identities=18% Similarity=0.245 Sum_probs=99.2
Q ss_pred ccccchHHHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCH
Q 037222 158 RTVVGLQSQLEQVWRCLVE-------------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRL 224 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 224 (904)
.++.|.+..+++|.+.+.- ...+-|.++|++|+|||+||+++++.. ... .+.|..+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~---~~~---~~~v~~s~l~s- 253 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI---GAN---FIFSPASGIVD- 253 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCE---EEEEEGGGTCC-
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCC---EEEEehhhhcc-
Confidence 4578999888888776531 245778999999999999999999987 222 23344332110
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHH-cCCcEEEEeccccccc--------c--------cccccCCCCC-C
Q 037222 225 EKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSL-GEKRFVLLLDDLWERV--------D--------LTKVGVPLPG-P 286 (904)
Q Consensus 225 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~r~LlVlDdv~~~~--------~--------~~~~~~~l~~-~ 286 (904)
.+.. ..+.....+.... ...+.+|++|+++... . ...+...+.+ .
T Consensus 254 ----------------k~~G-ese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 316 (437)
T 4b4t_L 254 ----------------KYIG-ESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFD 316 (437)
T ss_dssp ----------------SSSS-HHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSS
T ss_pred ----------------ccch-HHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhccc
Confidence 0111 1222333333322 4678999999997410 0 1112111110 2
Q ss_pred CCCCcEEEEEecchhhhcc--cc---CCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCch
Q 037222 287 QNTTSKVVFATRFIDVCGS--ME---ADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLP 356 (904)
Q Consensus 287 ~~~gs~IivTtR~~~v~~~--~~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 356 (904)
...+..||.||...+.... .. -...+++..-+.++-.++|+.+.........-++ ..+++.+.|.-
T Consensus 317 ~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl----~~lA~~t~G~s 387 (437)
T 4b4t_L 317 NLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDF----EAAVKMSDGFN 387 (437)
T ss_dssp CTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCH----HHHHHTCCSCC
T ss_pred CCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCH----HHHHHhCCCCC
Confidence 3345677778876554321 11 1346788888888888888877654332222333 45667777753
No 206
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.56 E-value=5.6e-05 Score=73.39 Aligned_cols=111 Identities=16% Similarity=0.107 Sum_probs=66.0
Q ss_pred CCCCCceEEEeecCccccccc----chhhcCCCcccEEEeecCCCccc----ccCccccccccCcEeecccCcccc----
Q 037222 536 PTCPDLLTLFLDFNEELEMIA----DGFFQFMPSLKVLKISNCGNFTF----QLPLGMSKLGSLELFDISRTEIQE---- 603 (904)
Q Consensus 536 ~~~~~L~~L~l~~~~~l~~~~----~~~~~~l~~Lr~L~l~~~~~i~~----~lp~~i~~L~~L~~L~l~~~~i~~---- 603 (904)
..++.|++|+++++..+..-. ...+...++|++|+|++| .+.. .+...+...++|++|+|++|.|..
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 556778888887431443211 122556677888888888 6652 133344455677777777777653
Q ss_pred -cchhhhcCCCCcEeec--cccccccc-----cchhhhcCCCCCceeeecccCC
Q 037222 604 -LPEELKLLVNLKCLNL--RWTSKLIR-----IPRQLISNSSGLRVLRMFATGY 649 (904)
Q Consensus 604 -Lp~~~~~L~~L~~L~l--~~~~~l~~-----lp~~~i~~L~~L~~L~l~~~~~ 649 (904)
+...+...++|++|++ ++| .+.. +.. .+...++|++|++.+|.+
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~-~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIAN-MLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHH-HHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHH-HHHhCCCcCEEeccCCCC
Confidence 4555666677777777 555 4443 222 244556677777766644
No 207
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.54 E-value=5.6e-05 Score=70.12 Aligned_cols=45 Identities=24% Similarity=0.264 Sum_probs=35.7
Q ss_pred cccchHHHHHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 159 TVVGLQSQLEQVWRCLVE--ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 159 ~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.++|+...+.++.+.+.. ....-|.|+|.+|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 478999999999888753 233456799999999999999999875
No 208
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.53 E-value=0.00089 Score=75.13 Aligned_cols=171 Identities=19% Similarity=0.181 Sum_probs=98.0
Q ss_pred ccccchHHHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCH
Q 037222 158 RTVVGLQSQLEQVWRCLVE-------------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRL 224 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 224 (904)
..++|.+..++++.+++.. ...+-|.|+|++|+|||++|+.+++.. .. ..+.+.++
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~---~~---~fv~vn~~----- 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GA---FFFLINGP----- 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC---SS---EEEEEEHH-----
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh---CC---CEEEEEch-----
Confidence 3589999999998887642 234568899999999999999998875 22 22333321
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEeccccccc-------------ccccccCCCCC-CCCCC
Q 037222 225 EKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSLGEKRFVLLLDDLWERV-------------DLTKVGVPLPG-PQNTT 290 (904)
Q Consensus 225 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~-------------~~~~~~~~l~~-~~~~g 290 (904)
. +...+ ...........+.....+++.+|+||+++.-. ....+...+.+ ....+
T Consensus 273 -~----l~~~~-------~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~ 340 (489)
T 3hu3_A 273 -E----IMSKL-------AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (489)
T ss_dssp -H----HHTSC-------TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSC
T ss_pred -H----hhhhh-------cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCc
Confidence 1 11111 11112223333344445678899999994210 01112111110 12334
Q ss_pred cEEEEEecchhh-hccc----cCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCc
Q 037222 291 SKVVFATRFIDV-CGSM----EADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGL 355 (904)
Q Consensus 291 s~IivTtR~~~v-~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 355 (904)
..||.||..... ...+ .-...+.+...+.++-.+++...+..........+ .++++.+.|.
T Consensus 341 v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l----~~la~~t~g~ 406 (489)
T 3hu3_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDL----EQVANETHGH 406 (489)
T ss_dssp EEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCH----HHHHHTCTTC
T ss_pred eEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhH----HHHHHHccCC
Confidence 566667765532 2111 12246889999999999999988754432223333 3456667664
No 209
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.52 E-value=5.2e-05 Score=73.66 Aligned_cols=118 Identities=18% Similarity=0.135 Sum_probs=78.8
Q ss_pred hhhcCCCcccEEEeecCCCccc----ccCccccccccCcEeecccCcccc-----cchhhhcCCCCcEeeccccccccc-
Q 037222 558 GFFQFMPSLKVLKISNCGNFTF----QLPLGMSKLGSLELFDISRTEIQE-----LPEELKLLVNLKCLNLRWTSKLIR- 627 (904)
Q Consensus 558 ~~~~~l~~Lr~L~l~~~~~i~~----~lp~~i~~L~~L~~L~l~~~~i~~-----Lp~~~~~L~~L~~L~l~~~~~l~~- 627 (904)
..+...+.|++|+|++|..+.. .+...+...++|++|+|++|.|.. +...+...++|++|+|++| .+..
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~ 108 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGS 108 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHH
Confidence 3467889999999998734441 344556667889999999998753 4556667788999999988 5554
Q ss_pred ----cchhhhcCCCCCceeee--cccCCcccccCCCCccccCCCccchHhhcCCCCCcEEEEEecch
Q 037222 628 ----IPRQLISNSSGLRVLRM--FATGYECFHEAPEDSVLFGGGEVLVQELLGLKYLEVLELTLGSY 688 (904)
Q Consensus 628 ----lp~~~i~~L~~L~~L~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 688 (904)
+.. .+...++|++|++ .+|.+...+. ......+...++|+.|+++.+..
T Consensus 109 g~~~l~~-~L~~n~~L~~L~L~~~~N~i~~~g~-----------~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 109 GILALVE-ALQSNTSLIELRIDNQSQPLGNNVE-----------MEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHH-GGGGCSSCCEEECCCCSSCCCHHHH-----------HHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHH-HHHhCCCceEEEecCCCCCCCHHHH-----------HHHHHHHHhCCCcCEEeccCCCC
Confidence 233 2667788999999 6676642110 11223445556777777765554
No 210
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.50 E-value=2.9e-05 Score=75.10 Aligned_cols=117 Identities=15% Similarity=0.137 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHHhc---CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCC
Q 037222 163 LQSQLEQVWRCLVE---ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSD 239 (904)
Q Consensus 163 r~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~ 239 (904)
....++.+.+++.+ .....+.|+|++|+||||||+.+++.. .....+ .++++ +..++...+........
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~-~~~~g~-~~~~~------~~~~~~~~~~~~~~~~~ 90 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAI-YEKKGI-RGYFF------DTKDLIFRLKHLMDEGK 90 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHH-HHHSCC-CCCEE------EHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHH-HHHcCC-eEEEE------EHHHHHHHHHHHhcCch
Confidence 44455555555543 235789999999999999999999876 211121 12333 34455555544432211
Q ss_pred CCCCCCCHHHHHHHHHHHHcCCcEEEEeccccc--ccccc--cccCCCCCCCCCCcEEEEEecc
Q 037222 240 DSWKNKSFEEKAVDILRSLGEKRFVLLLDDLWE--RVDLT--KVGVPLPGPQNTTSKVVFATRF 299 (904)
Q Consensus 240 ~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~--~~~~~--~~~~~l~~~~~~gs~IivTtR~ 299 (904)
. . ... ..+. +.-+|||||++. ...|. .+...+......|..||+||..
T Consensus 91 ----~-~--~~~----~~~~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 91 ----D-T--KFL----KTVL-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp ----C-S--HHH----HHHH-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred ----H-H--HHH----HHhc-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 0 1 111 2222 456899999973 22232 1211121011246788888873
No 211
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.50 E-value=0.00068 Score=81.53 Aligned_cols=153 Identities=16% Similarity=0.261 Sum_probs=92.7
Q ss_pred ccccchHHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhcccCCC----CCCEEEEE-EecCCCCHHHHHHHHH
Q 037222 158 RTVVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPT----NFDCVIWV-VVSKDLRLEKIQDDIG 232 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~f~~~~wv-~vs~~~~~~~~~~~i~ 232 (904)
..++||+.++.++++.|......-+.++|.+|+||||+|+.+++.. .... ..+..+|. .++. +
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l-~~~~v~~~~~~~~~~~~~~~~------l----- 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRI-VQGDVPEVMADCTIYSLDIGS------L----- 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHH-HHTCSCGGGTTCEEEECCCC-------------
T ss_pred CCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHH-HhCCCChhhcCCEEEEEcHHH------H-----
Confidence 3589999999999999987666678899999999999999998875 1111 12333332 1110 0
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHHc-CCcEEEEeccccccc--------c---cccccCCCCCCCCCCcEEEEEecch
Q 037222 233 KKIGLSDDSWKNKSFEEKAVDILRSLG-EKRFVLLLDDLWERV--------D---LTKVGVPLPGPQNTTSKVVFATRFI 300 (904)
Q Consensus 233 ~~l~~~~~~~~~~~~~~~~~~l~~~l~-~~r~LlVlDdv~~~~--------~---~~~~~~~l~~~~~~gs~IivTtR~~ 300 (904)
+... . .....+.....+...+. .++.+|++||+.... . ...+...+. ..+..+|.+|...
T Consensus 254 --~~~~--~-~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~---~~~~~~I~at~~~ 325 (758)
T 1r6b_X 254 --LAGT--K-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS---SGKIRVIGSTTYQ 325 (758)
T ss_dssp ---CCC--C-CSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS---SCCCEEEEEECHH
T ss_pred --hccc--c-ccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh---CCCeEEEEEeCch
Confidence 0000 0 12344545555555553 457899999997431 1 112233332 2345677777654
Q ss_pred hhhcc-------ccCCceeecccCCHHHHHHHHHHhh
Q 037222 301 DVCGS-------MEADRKFLVACLSEKDAWELFREKV 330 (904)
Q Consensus 301 ~v~~~-------~~~~~~~~l~~L~~~e~~~Lf~~~~ 330 (904)
..... ......+.++..+.++..+++....
T Consensus 326 ~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 326 EFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred HHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 42111 1122368899999999999887654
No 212
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.50 E-value=0.0027 Score=65.03 Aligned_cols=176 Identities=19% Similarity=0.170 Sum_probs=93.0
Q ss_pred ccccchHHHHHHHHHHHh---c---------CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHH
Q 037222 158 RTVVGLQSQLEQVWRCLV---E---------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 225 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 225 (904)
.+++|.+..++++.+.+. . ...+-+.|+|++|+||||||+.+++.. ...| +.+..+.-.+
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~---~~i~~~~~~~-- 83 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA---KVPF---FTISGSDFVE-- 83 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH---TCCE---EEECSCSSTT--
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCCE---EEEeHHHHHH--
Confidence 468999887777665432 1 123458899999999999999999876 2222 3332221100
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEeccccccc----------------ccccccCCCCC-CCC
Q 037222 226 KIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSLGEKRFVLLLDDLWERV----------------DLTKVGVPLPG-PQN 288 (904)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~----------------~~~~~~~~l~~-~~~ 288 (904)
.............+.......+.++++|+++.-. ....+...+.+ ...
T Consensus 84 ---------------~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 148 (257)
T 1lv7_A 84 ---------------MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN 148 (257)
T ss_dssp ---------------SCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSS
T ss_pred ---------------HhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccC
Confidence 0011222223333333334567899999995310 00111111100 123
Q ss_pred CCcEEEEEecchhhh-cccc----CCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCC-chhHHH
Q 037222 289 TTSKVVFATRFIDVC-GSME----ADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGG-LPLALI 360 (904)
Q Consensus 289 ~gs~IivTtR~~~v~-~~~~----~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~G-lPLai~ 360 (904)
.+..||.||...+.. .... -...+.+...+.++-.+++...+.......... ...++..+.| .+--+.
T Consensus 149 ~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~----~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 149 EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDID----AAIIARGTPGFSGADLA 222 (257)
T ss_dssp SCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCCHHHHH
T ss_pred CCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCcccc----HHHHHHHcCCCCHHHHH
Confidence 345677777655421 1111 134677788888888888877664332111111 2346667777 554443
No 213
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.50 E-value=0.00068 Score=74.13 Aligned_cols=170 Identities=19% Similarity=0.195 Sum_probs=97.1
Q ss_pred ccccchHHHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCH
Q 037222 158 RTVVGLQSQLEQVWRCLVE-------------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRL 224 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 224 (904)
.++.|.+..+++|.+.+.- ...+-|.++|++|+|||.||+++++.. ... .+.+..+.-
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~---~~~---f~~v~~s~l--- 251 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT---NAT---FLKLAAPQL--- 251 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCE---EEEEEGGGG---
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh---CCC---EEEEehhhh---
Confidence 4678999998888876431 235678899999999999999999987 222 233333221
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHH-cCCcEEEEecccccc-------c-----c----cccccCCCCC-C
Q 037222 225 EKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSL-GEKRFVLLLDDLWER-------V-----D----LTKVGVPLPG-P 286 (904)
Q Consensus 225 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~r~LlVlDdv~~~-------~-----~----~~~~~~~l~~-~ 286 (904)
... +.. ..+...+.+.... ...+.+|++|+++.- . . ...+...+.+ .
T Consensus 252 -----------~~~---~vG-ese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~ 316 (434)
T 4b4t_M 252 -----------VQM---YIG-EGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFS 316 (434)
T ss_dssp -----------CSS---CSS-HHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSC
T ss_pred -----------hhc---ccc-hHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccC
Confidence 000 011 1223333333322 456899999998631 0 0 1112222221 1
Q ss_pred CCCCcEEEEEecchhhhcc-c-c---CCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCc
Q 037222 287 QNTTSKVVFATRFIDVCGS-M-E---ADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGL 355 (904)
Q Consensus 287 ~~~gs~IivTtR~~~v~~~-~-~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 355 (904)
...+..||.||...+.... + . -...++++.-+.++-.++|..+.........-++ ..|++.+.|.
T Consensus 317 ~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl----~~lA~~t~G~ 386 (434)
T 4b4t_M 317 SDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINW----QELARSTDEF 386 (434)
T ss_dssp SSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCH----HHHHHHCSSC
T ss_pred CCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCH----HHHHHhCCCC
Confidence 2334566667776554221 1 1 2346788888888888888777643332222233 4567778775
No 214
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.46 E-value=0.0034 Score=67.06 Aligned_cols=171 Identities=20% Similarity=0.182 Sum_probs=91.1
Q ss_pred ccccchHHHHHHHHHHHhc-----CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHH
Q 037222 158 RTVVGLQSQLEQVWRCLVE-----ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIG 232 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~ 232 (904)
..++|.+..++.+...+.. .....+.++|++|+||||||+.+++.. ...|. . .+....
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l---~~~~~---~--~sg~~~--------- 87 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL---QTNIH---V--TSGPVL--------- 87 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH---TCCEE---E--EETTTC---------
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEE---E--EechHh---------
Confidence 4568888777777666643 234678999999999999999999986 22211 1 111100
Q ss_pred HHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEeccccccc--ccccccCCCCC--------CC---------CCCcEE
Q 037222 233 KKIGLSDDSWKNKSFEEKAVDILRSLGEKRFVLLLDDLWERV--DLTKVGVPLPG--------PQ---------NTTSKV 293 (904)
Q Consensus 233 ~~l~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~--~~~~~~~~l~~--------~~---------~~gs~I 293 (904)
....... .+...+ .++-++++|++..-. ..+.+...+.. .+ -....+
T Consensus 88 ------------~~~~~l~-~~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~l 153 (334)
T 1in4_A 88 ------------VKQGDMA-AILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTL 153 (334)
T ss_dssp ------------CSHHHHH-HHHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEE
T ss_pred ------------cCHHHHH-HHHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEE
Confidence 0011111 111112 234466778775321 11111100000 00 011223
Q ss_pred E-EEecchhhhcccc--CCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHHHHH
Q 037222 294 V-FATRFIDVCGSME--ADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLALITI 362 (904)
Q Consensus 294 i-vTtR~~~v~~~~~--~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 362 (904)
+ .|++...+...+. ....+.+++.+.++-.+++.+.+..... .-..+.+..|++.++|.|-.+..+
T Consensus 154 i~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~---~~~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 154 VGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV---EIEDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC---CBCHHHHHHHHHTSTTCHHHHHHH
T ss_pred EEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC---CcCHHHHHHHHHhcCCChHHHHHH
Confidence 3 3444333311111 1235789999999999999887743221 112456889999999999755443
No 215
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.44 E-value=0.0013 Score=71.00 Aligned_cols=171 Identities=18% Similarity=0.234 Sum_probs=97.9
Q ss_pred ccccchHHHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCH
Q 037222 158 RTVVGLQSQLEQVWRCLVE-------------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRL 224 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 224 (904)
.++.|.++.+++|.+.+.- ...+-|.++|++|+|||.||+++++.. ...| +.+..+.-
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~---~~~f---i~v~~s~l--- 252 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT---SATF---LRIVGSEL--- 252 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH---TCEE---EEEESGGG---
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh---CCCE---EEEEHHHh---
Confidence 4578889888888776531 235678999999999999999999987 2222 23332211
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHH-cCCcEEEEeccccccc----------c------cccccCCCCC-C
Q 037222 225 EKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSL-GEKRFVLLLDDLWERV----------D------LTKVGVPLPG-P 286 (904)
Q Consensus 225 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~r~LlVlDdv~~~~----------~------~~~~~~~l~~-~ 286 (904)
.. .+. ...+...+.+.... +..+.+|++|+++... + ...+...+.+ .
T Consensus 253 -----------~s---k~v-Gesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~ 317 (437)
T 4b4t_I 253 -----------IQ---KYL-GDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFD 317 (437)
T ss_dssp -----------CC---SSS-SHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCC
T ss_pred -----------hh---ccC-chHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcC
Confidence 00 001 12233333333333 4578999999997410 0 0111111110 2
Q ss_pred CCCCcEEEEEecchhhhcc-c-c---CCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCch
Q 037222 287 QNTTSKVVFATRFIDVCGS-M-E---ADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLP 356 (904)
Q Consensus 287 ~~~gs~IivTtR~~~v~~~-~-~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 356 (904)
...+..||.||...+..+. + . -...+++..-+.++-.++|..+........+-++ ..|++.+.|.-
T Consensus 318 ~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl----~~LA~~T~GfS 388 (437)
T 4b4t_I 318 DRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNL----ETLVTTKDDLS 388 (437)
T ss_dssp CSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCH----HHHHHHCCSCC
T ss_pred CCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCH----HHHHHhCCCCC
Confidence 2345566777766554321 1 1 1346788888888888899887754432333333 45667777753
No 216
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.42 E-value=0.0014 Score=71.57 Aligned_cols=171 Identities=18% Similarity=0.218 Sum_probs=98.5
Q ss_pred ccccchHHHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCH
Q 037222 158 RTVVGLQSQLEQVWRCLVE-------------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRL 224 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 224 (904)
.++.|.++.+++|.+.+.- ...+-|.++|++|+|||+||+++++.. ... .+.|..+.-
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~---~~~---fi~vs~s~L--- 279 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT---DAT---FIRVIGSEL--- 279 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH---TCE---EEEEEGGGG---
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc---CCC---eEEEEhHHh---
Confidence 3578899888888776431 246778899999999999999999987 222 233333321
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHH-cCCcEEEEeccccccc--------c--------cccccCCCCC-C
Q 037222 225 EKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSL-GEKRFVLLLDDLWERV--------D--------LTKVGVPLPG-P 286 (904)
Q Consensus 225 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~r~LlVlDdv~~~~--------~--------~~~~~~~l~~-~ 286 (904)
... +.. ..+...+.+.... ...+.+|++|+++... . ...+...+.+ .
T Consensus 280 -----------~sk---~vG-esek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 344 (467)
T 4b4t_H 280 -----------VQK---YVG-EGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFD 344 (467)
T ss_dssp -----------CCC---SSS-HHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSC
T ss_pred -----------hcc---cCC-HHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccC
Confidence 000 011 1222333333322 4678999999996410 0 0011111110 2
Q ss_pred CCCCcEEEEEecchhhhcc-c----cCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCch
Q 037222 287 QNTTSKVVFATRFIDVCGS-M----EADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLP 356 (904)
Q Consensus 287 ~~~gs~IivTtR~~~v~~~-~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 356 (904)
...+..||.||...+.... + .-...+++..-+.++-.++|+.++........-++ ..|++.|.|.-
T Consensus 345 ~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl----~~LA~~T~GfS 415 (467)
T 4b4t_H 345 PRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRW----ELISRLCPNST 415 (467)
T ss_dssp CTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHHCCSCC
T ss_pred CCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCH----HHHHHHCCCCC
Confidence 2334456667765444211 1 12457888888999999999887755432222333 45677888753
No 217
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.41 E-value=0.0011 Score=79.64 Aligned_cols=151 Identities=13% Similarity=0.102 Sum_probs=84.3
Q ss_pred ccccchHHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhcccCCC--C-CCEEEEEEecCCCCHHHHHHHHHHH
Q 037222 158 RTVVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPT--N-FDCVIWVVVSKDLRLEKIQDDIGKK 234 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--~-f~~~~wv~vs~~~~~~~~~~~i~~~ 234 (904)
..++||+.+++++...|......-+.++|++|+|||++|+.+++....... . .+.. ++.++-
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~-~~~~~~-------------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKR-VMTLDM-------------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCC-EECC----------------
T ss_pred CCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCe-EEEecc--------------
Confidence 358999999999999998765566789999999999999999988511100 0 1111 111111
Q ss_pred hCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEecccccccccccccCCCCCCCCCCcEEEEEecchhhh-------cccc
Q 037222 235 IGLSDDSWKNKSFEEKAVDILRSLGEKRFVLLLDDLWERVDLTKVGVPLPGPQNTTSKVVFATRFIDVC-------GSME 307 (904)
Q Consensus 235 l~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~~~~~~~~l~~~~~~gs~IivTtR~~~v~-------~~~~ 307 (904)
+... ...........+......++.+|++|. .......+...+. ....++|.||...... ....
T Consensus 245 -g~~~---~G~~e~~l~~~~~~~~~~~~~iLfiD~--~~~~~~~L~~~l~---~~~v~~I~at~~~~~~~~~~~d~al~r 315 (758)
T 3pxi_A 245 -GTKY---RGEFEDRLKKVMDEIRQAGNIILFIDA--AIDASNILKPSLA---RGELQCIGATTLDEYRKYIEKDAALER 315 (758)
T ss_dssp ------------CTTHHHHHHHHHTCCCCEEEECC----------CCCTT---SSSCEEEEECCTTTTHHHHTTCSHHHH
T ss_pred -cccc---cchHHHHHHHHHHHHHhcCCEEEEEcC--chhHHHHHHHHHh---cCCEEEEeCCChHHHHHHhhccHHHHh
Confidence 0000 000111122222233346788999992 1111222333332 3346677777655421 1111
Q ss_pred CCceeecccCCHHHHHHHHHHhhCc
Q 037222 308 ADRKFLVACLSEKDAWELFREKVGE 332 (904)
Q Consensus 308 ~~~~~~l~~L~~~e~~~Lf~~~~~~ 332 (904)
....+.++..+.++..+++......
T Consensus 316 Rf~~i~v~~p~~~~~~~il~~~~~~ 340 (758)
T 3pxi_A 316 RFQPIQVDQPSVDESIQILQGLRDR 340 (758)
T ss_dssp SEEEEECCCCCHHHHHHHHHHTTTT
T ss_pred hCcEEEeCCCCHHHHHHHHHHHHHH
Confidence 2356899999999999999876543
No 218
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.40 E-value=9.9e-05 Score=76.56 Aligned_cols=152 Identities=16% Similarity=0.113 Sum_probs=80.5
Q ss_pred ccccchHHHHHHHHHHHhc------------CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHH
Q 037222 158 RTVVGLQSQLEQVWRCLVE------------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 225 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 225 (904)
.+++|.+..++.+.+.+.. ...+-+.++|++|+|||+||+.+++.. . ..|- .+..+.-.
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~-~--~~~~---~v~~~~~~--- 81 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA-H--VPFF---SMGGSSFI--- 81 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH-T--CCCC---CCCSCTTT---
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh-C--CCEE---EechHHHH---
Confidence 4578888777777665531 123347799999999999999999986 2 2221 11111100
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEeccccccc-----------------ccccccCCCCCC--
Q 037222 226 KIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSLGEKRFVLLLDDLWERV-----------------DLTKVGVPLPGP-- 286 (904)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~-----------------~~~~~~~~l~~~-- 286 (904)
...... ........ +......++.+|++||++.-. ....+...+.+.
T Consensus 82 -------~~~~~~----~~~~~~~~---~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 147 (268)
T 2r62_A 82 -------EMFVGL----GASRVRDL---FETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGS 147 (268)
T ss_dssp -------TSCSSS----CSSSSSTT---HHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSC
T ss_pred -------Hhhcch----HHHHHHHH---HHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCccc
Confidence 000000 00011111 112223467899999996421 122233333211
Q ss_pred CCCCcEEEEEecchhhhc--ccc---CCceeecccCCHHHHHHHHHHhhCc
Q 037222 287 QNTTSKVVFATRFIDVCG--SME---ADRKFLVACLSEKDAWELFREKVGE 332 (904)
Q Consensus 287 ~~~gs~IivTtR~~~v~~--~~~---~~~~~~l~~L~~~e~~~Lf~~~~~~ 332 (904)
......||.||....... ... -...+.+...+.++-.+++...+..
T Consensus 148 ~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~ 198 (268)
T 2r62_A 148 ENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKG 198 (268)
T ss_dssp SCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSS
T ss_pred CCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhc
Confidence 112345666776554211 111 1246788888888888888877643
No 219
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.38 E-value=0.0013 Score=71.77 Aligned_cols=170 Identities=22% Similarity=0.281 Sum_probs=92.4
Q ss_pred ccccchHHHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCH
Q 037222 158 RTVVGLQSQLEQVWRCLVE-------------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRL 224 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 224 (904)
.++.|.+..+++|.+.+.- ...+-|.++|++|+|||+||+++++.. ... .+.|..+.-.+
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~---~~~---~~~v~~~~l~~- 244 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST---KAA---FIRVNGSEFVH- 244 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH---TCE---EEEEEGGGTCC-
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCC---eEEEecchhhc-
Confidence 4678999998888876631 245668999999999999999999987 222 23343332110
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHH-cCCcEEEEecccccc--------c--c------cccccCCCCC-C
Q 037222 225 EKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSL-GEKRFVLLLDDLWER--------V--D------LTKVGVPLPG-P 286 (904)
Q Consensus 225 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~r~LlVlDdv~~~--------~--~------~~~~~~~l~~-~ 286 (904)
.+.. ..+..++.+.... ...+.++++|+++.. . + ...+...+.+ .
T Consensus 245 ----------------~~~G-e~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~ 307 (428)
T 4b4t_K 245 ----------------KYLG-EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFD 307 (428)
T ss_dssp ----------------SSCS-HHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSC
T ss_pred ----------------cccc-hhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCC
Confidence 0111 1222233333322 457899999999631 0 0 1111111110 2
Q ss_pred CCCCcEEEEEecchhhhc-c-cc---CCceeecccCCH-HHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCc
Q 037222 287 QNTTSKVVFATRFIDVCG-S-ME---ADRKFLVACLSE-KDAWELFREKVGEETLQSHHDIVELAQIVAKECGGL 355 (904)
Q Consensus 287 ~~~gs~IivTtR~~~v~~-~-~~---~~~~~~l~~L~~-~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 355 (904)
...+..||.||...+... . .. -...+++..++. ++-..+|..+.........-++ ..+++.+.|.
T Consensus 308 ~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl----~~lA~~t~G~ 378 (428)
T 4b4t_K 308 QSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADL----DSLIIRNDSL 378 (428)
T ss_dssp SSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCH----HHHHHHTTTC
T ss_pred CCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCH----HHHHHHCCCC
Confidence 234556777776554321 1 11 124567766654 4455566665543322222333 4567777775
No 220
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.37 E-value=0.0011 Score=70.30 Aligned_cols=46 Identities=22% Similarity=0.242 Sum_probs=38.2
Q ss_pred ccccchHHHHHHHHHHHhc--------------CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 158 RTVVGLQSQLEQVWRCLVE--------------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
..++|.+..++.+...+.. .....+.++|++|+|||++|+.+++..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999988887753 234567899999999999999999876
No 221
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.34 E-value=0.00041 Score=68.33 Aligned_cols=114 Identities=24% Similarity=0.212 Sum_probs=61.7
Q ss_pred HHHHHHHHHHhcC----CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCC
Q 037222 165 SQLEQVWRCLVEE----SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDD 240 (904)
Q Consensus 165 ~~~~~l~~~L~~~----~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~ 240 (904)
..++.+.+++... ....+.|+|++|+||||||+.+++.. . .....++|+.+ ..+...+......
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~-~--~~~~~~~~~~~------~~~~~~~~~~~~~--- 103 (202)
T 2w58_A 36 KAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANEL-A--KRNVSSLIVYV------PELFRELKHSLQD--- 103 (202)
T ss_dssp HHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHH-H--TTTCCEEEEEH------HHHHHHHHHC------
T ss_pred HHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHH-H--HcCCeEEEEEh------HHHHHHHHHHhcc---
Confidence 3445555665543 12788999999999999999999987 2 22334566654 3444554443321
Q ss_pred CCCCCCHHHHHHHHHHHHcCCcEEEEecccccc--ccccc--ccC-CCCCCCCCCcEEEEEecc
Q 037222 241 SWKNKSFEEKAVDILRSLGEKRFVLLLDDLWER--VDLTK--VGV-PLPGPQNTTSKVVFATRF 299 (904)
Q Consensus 241 ~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~--~~~~~--~~~-~l~~~~~~gs~IivTtR~ 299 (904)
......... +.+. -+|||||++.. ..|.. +.. .+......+.++|+||..
T Consensus 104 ----~~~~~~~~~----~~~~-~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 104 ----QTMNEKLDY----IKKV-PVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp ----CCCHHHHHH----HHHS-SEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred ----chHHHHHHH----hcCC-CEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 112222222 2222 38999999642 33322 211 111001235578888873
No 222
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.33 E-value=0.0023 Score=70.30 Aligned_cols=121 Identities=14% Similarity=0.237 Sum_probs=80.9
Q ss_pred ceeEEEeeccccccccC--CCCCCCceEEEeecC--cccccccchhhcCCCcccEEEeecCCCcccccC-ccccccccCc
Q 037222 518 NVTRLSLMQNQIKILSE--VPTCPDLLTLFLDFN--EELEMIADGFFQFMPSLKVLKISNCGNFTFQLP-LGMSKLGSLE 592 (904)
Q Consensus 518 ~~r~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~--~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp-~~i~~L~~L~ 592 (904)
.++.+.+..+ ++.+.. +..|.+|+.+.+..+ ..+..++...|.++..|+.+.+..+ ++ .++ ..+..+.+|+
T Consensus 65 ~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~-~I~~~aF~~c~~L~ 140 (394)
T 4gt6_A 65 VLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VT-EIDSEAFHHCEELD 140 (394)
T ss_dssp CCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CS-EECTTTTTTCTTCC
T ss_pred cCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cc-eehhhhhhhhcccc
Confidence 3666666543 444433 578999999998743 2477888888999988888766553 44 333 3457788888
Q ss_pred EeecccCcccccch-hhhcCCCCcEeeccccccccccchhhhcCCCCCceeeecc
Q 037222 593 LFDISRTEIQELPE-ELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFA 646 (904)
Q Consensus 593 ~L~l~~~~i~~Lp~-~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~ 646 (904)
.+.+..+ +..++. .+..+.+|+.+.+..+ +..+....+.+ .+|+.+.+..
T Consensus 141 ~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~-~~l~~i~ip~ 191 (394)
T 4gt6_A 141 TVTIPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTG-TALTQIHIPA 191 (394)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTT-CCCSEEEECT
T ss_pred cccccce-eeeecccceecccccccccccce--eeEeccccccc-cceeEEEECC
Confidence 8888654 334433 4567788888888654 56676665643 5677777754
No 223
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.25 E-value=0.0034 Score=69.83 Aligned_cols=172 Identities=17% Similarity=0.190 Sum_probs=95.6
Q ss_pred ccccchHHHHHHHHHHHh---c---------CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHH
Q 037222 158 RTVVGLQSQLEQVWRCLV---E---------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 225 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 225 (904)
.+++|.+..++++.+.+. . ...+-|.++|++|+||||||+.+++.. ...| +.++.+.-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~---~~~f---~~is~~~~~~~- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA---NVPF---FHISGSDFVEL- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH---TCCE---EEEEGGGTTTC-
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc---CCCe---eeCCHHHHHHH-
Confidence 468999887777666543 1 113458899999999999999999976 2222 33333321110
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEeccccccc----------------ccccccCCCCC-CCC
Q 037222 226 KIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSLGEKRFVLLLDDLWERV----------------DLTKVGVPLPG-PQN 288 (904)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~----------------~~~~~~~~l~~-~~~ 288 (904)
+...........+.....+.+.+|+||++..-. ....+...+.+ ...
T Consensus 89 ----------------~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~ 152 (476)
T 2ce7_A 89 ----------------FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK 152 (476)
T ss_dssp ----------------CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGG
T ss_pred ----------------HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC
Confidence 011111222223333445678999999996420 11122111110 122
Q ss_pred CCcEEEEEecchhhhc-c-cc---CCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCch
Q 037222 289 TTSKVVFATRFIDVCG-S-ME---ADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLP 356 (904)
Q Consensus 289 ~gs~IivTtR~~~v~~-~-~~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 356 (904)
.+..||.||...+... . .. -...+.+...+.++-.+++..++.......... ...|++.+.|..
T Consensus 153 ~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 153 EGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp GTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred CCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhh----HHHHHHhcCCCc
Confidence 4556777777665432 1 11 123778888888888888877765432222222 234777788876
No 224
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.24 E-value=0.00025 Score=72.45 Aligned_cols=78 Identities=24% Similarity=0.320 Sum_probs=57.2
Q ss_pred CCCceEEEeecCcccccccc--hhhcCCCcccEEEeecCCCcccccCccccccc--cCcEeecccCcccc-cc-------
Q 037222 538 CPDLLTLFLDFNEELEMIAD--GFFQFMPSLKVLKISNCGNFTFQLPLGMSKLG--SLELFDISRTEIQE-LP------- 605 (904)
Q Consensus 538 ~~~L~~L~l~~~~~l~~~~~--~~~~~l~~Lr~L~l~~~~~i~~~lp~~i~~L~--~L~~L~l~~~~i~~-Lp------- 605 (904)
+++|++|+++ +|.+..++. ..+..+++|++|+|++| .++ .+ ..+..+. +|++|+|++|.+.. +|
T Consensus 169 l~~L~~L~Ls-~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~-~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 169 IPELLSLNLS-NNRLYRLDDMSSIVQKAPNLKILNLSGN-ELK-SE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp CTTCCEEECT-TSCCCCCGGGTTHHHHSTTCCEEECTTS-CCC-SG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred CCCCCEEECC-CCCCCCCccchhHHhhCCCCCEEECCCC-ccC-Cc-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 5567777777 555655542 44678999999999999 887 54 3455555 89999999998863 44
Q ss_pred hhhhcCCCCcEeec
Q 037222 606 EELKLLVNLKCLNL 619 (904)
Q Consensus 606 ~~~~~L~~L~~L~l 619 (904)
..+..+++|+.||=
T Consensus 245 ~il~~~P~L~~LDg 258 (267)
T 3rw6_A 245 AIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHCTTCCEESS
T ss_pred HHHHHCcccCeECC
Confidence 24678899999874
No 225
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.20 E-value=0.00089 Score=70.94 Aligned_cols=60 Identities=22% Similarity=0.351 Sum_probs=43.6
Q ss_pred ccccchHHHHHHHHHHHhcC---------CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecC
Q 037222 158 RTVVGLQSQLEQVWRCLVEE---------SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSK 220 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~ 220 (904)
..++|.+..++.+...+... ....+.++|++|+||||+|+.+++.. . ..-...+.+.++.
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~-~--~~~~~~~~~~~~~ 85 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL-F--DTEEAMIRIDMTE 85 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHH-H--SCGGGEEEEEGGG
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHH-c--CCCcceEEeeccc
Confidence 35789999988888887642 13579999999999999999999876 1 1112345555554
No 226
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.19 E-value=0.014 Score=63.65 Aligned_cols=103 Identities=18% Similarity=0.202 Sum_probs=51.9
Q ss_pred hhcccCccCceeecccCCcceeeeccccccccccCCcccCCccEEeEeccCCCCcCcc--cccCCCccEEeEecCccchh
Q 037222 723 AFADLNHLNELYIYEGIELEELKIDYTEIVRKRREPFVFRSLHRVTIFSCGKLKDVTF--LVFAPNLKSLELLQCDAMEE 800 (904)
Q Consensus 723 ~l~~~~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~c~~l~~ 800 (904)
.+..+.+|+.+.+..+ +..+....+ ..+.+|+.+.+.. .+..++. +..+++|+.+.+.+ +.++.
T Consensus 235 ~f~~~~~L~~i~lp~~--v~~I~~~aF---------~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~-~~i~~ 300 (379)
T 4h09_A 235 AFYGMKALDEIAIPKN--VTSIGSFLL---------QNCTALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMDN-SAIET 300 (379)
T ss_dssp TTTTCSSCCEEEECTT--CCEECTTTT---------TTCTTCCEEEECC--CCSEECTTTTTTCTTCCEEEECC-TTCCE
T ss_pred cccCCccceEEEcCCC--ccEeCcccc---------ceeehhccccccc--cceeccccccccccccccccccc-cccce
Confidence 3455666666666432 332222111 2456677776654 3444432 56677777777754 22333
Q ss_pred hcccCcccCCccccCCCCCCCcccEeecccccccccccCC-CCCCCCcceEee
Q 037222 801 IISVGEIAETPEMMGHISPFENLQSLHLSYLPILRSIYWK-PLPFTHLKKMEV 852 (904)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i~~~-~~~~~~L~~L~i 852 (904)
+.. ..+..+++|+.+.|.. +++.|... ...|++|+.+.+
T Consensus 301 I~~-----------~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 301 LEP-----------RVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp ECT-----------TTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCC
T ss_pred ehh-----------hhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEE
Confidence 322 1455667777777742 24444332 223445555444
No 227
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.16 E-value=0.0026 Score=71.22 Aligned_cols=46 Identities=24% Similarity=0.247 Sum_probs=35.8
Q ss_pred ccccchHHHHHHHHHHH---hcC--CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 158 RTVVGLQSQLEQVWRCL---VEE--SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L---~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
..++|.+..++.+..++ ..+ ..+-+.++|++|+|||++|+.+++..
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHh
Confidence 56899998877655443 333 23568899999999999999999876
No 228
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.15 E-value=0.00013 Score=67.47 Aligned_cols=46 Identities=13% Similarity=0.083 Sum_probs=33.9
Q ss_pred ccccchHHHHHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 158 RTVVGLQSQLEQVWRCLVE--ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
-.++|++..+.++.+.+.. ....-|.|+|.+|+|||++|+.+++..
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 3578999888888887753 233447799999999999999988764
No 229
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.10 E-value=8.5e-05 Score=69.06 Aligned_cols=55 Identities=16% Similarity=0.147 Sum_probs=35.2
Q ss_pred cccchHHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEec
Q 037222 159 TVVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVS 219 (904)
Q Consensus 159 ~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs 219 (904)
.++|.+.+.- ..|..-.-..++|+|..|+|||||++.++... .. ..+ ..+++...
T Consensus 19 f~~g~n~~~~---~~l~~~~g~~~~l~G~~G~GKTtL~~~i~~~~-~~-~g~-~~~~~~~~ 73 (149)
T 2kjq_A 19 FLGTENAELV---YVLRHKHGQFIYVWGEEGAGKSHLLQAWVAQA-LE-AGK-NAAYIDAA 73 (149)
T ss_dssp CCSCCTHHHH---HHCCCCCCSEEEEESSSTTTTCHHHHHHHHHH-HT-TTC-CEEEEETT
T ss_pred cCcCccHHHH---HHHHhcCCCEEEEECCCCCCHHHHHHHHHHHH-Hh-cCC-cEEEEcHH
Confidence 3455554433 33332245689999999999999999999987 32 222 25566543
No 230
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.85 E-value=0.0022 Score=75.63 Aligned_cols=172 Identities=18% Similarity=0.174 Sum_probs=96.6
Q ss_pred ccccchHHHHHHHHHHHh----c---------CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCH
Q 037222 158 RTVVGLQSQLEQVWRCLV----E---------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRL 224 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 224 (904)
.++.|.++.+++|.+.+. . ...+-|.++|++|+|||+||+++++.. ..+ .+.|..+
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el---g~~---~~~v~~~----- 272 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAF---FFLINGP----- 272 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT---TCE---EEEEEHH-----
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCe---EEEEEhH-----
Confidence 356788887777776653 1 235678999999999999999999876 222 2344322
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEeccccccc--------c-----cccccCCCCC-CCCCC
Q 037222 225 EKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSLGEKRFVLLLDDLWERV--------D-----LTKVGVPLPG-PQNTT 290 (904)
Q Consensus 225 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~--------~-----~~~~~~~l~~-~~~~g 290 (904)
++ . +. +.......+...+....+..+.+|++|+++.-. + ...+...+.+ ....+
T Consensus 273 -~l----~---sk----~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~ 340 (806)
T 3cf2_A 273 -EI----M---SK----LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (806)
T ss_dssp -HH----H---SS----CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGC
T ss_pred -Hh----h---cc----cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCC
Confidence 11 1 10 011122222223333335678999999997421 0 0111111110 11233
Q ss_pred cEEEEEecchhh-hcccc----CCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCch
Q 037222 291 SKVVFATRFIDV-CGSME----ADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLP 356 (904)
Q Consensus 291 s~IivTtR~~~v-~~~~~----~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 356 (904)
..||.||...+. -..+. -...+++..-+.++-.++|..+........+.++ ..|++++.|.-
T Consensus 341 V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl----~~lA~~T~Gfs 407 (806)
T 3cf2_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDL----EQVANETHGHV 407 (806)
T ss_dssp EEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCH----HHHHHHCCSCC
T ss_pred EEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCH----HHHHHhcCCCC
Confidence 445666665433 22221 2346888888999999999887754432333333 45777888764
No 231
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.77 E-value=0.00082 Score=80.68 Aligned_cols=60 Identities=22% Similarity=0.360 Sum_probs=43.5
Q ss_pred ccccchHHHHHHHHHHHhcC---------CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecC
Q 037222 158 RTVVGLQSQLEQVWRCLVEE---------SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSK 220 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~ 220 (904)
..++|.+..++.+...+... ....+.++|++|+|||++|+.+++... ..-...+.+.++.
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~---~~~~~~i~i~~s~ 559 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIF---GDEESMIRIDMSE 559 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHH---SCTTCEEEEEGGG
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc---CCCcceEEEechh
Confidence 46899999998888887631 223689999999999999999998862 1222345555543
No 232
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.71 E-value=0.025 Score=58.22 Aligned_cols=150 Identities=15% Similarity=0.140 Sum_probs=81.9
Q ss_pred ccccchHHHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCH
Q 037222 158 RTVVGLQSQLEQVWRCLVE-------------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRL 224 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 224 (904)
.++.|.++.+++|.+.+.. .-.+-+.++|++|+||||||+.++... .. ..+++..+.-.+
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~-~~-----~~i~i~g~~l~~- 82 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES-GL-----NFISVKGPELLN- 82 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHT-TC-----EEEEEETTTTCS-
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHc-CC-----CEEEEEcHHHHh-
Confidence 4567888888877765421 112239999999999999999999876 21 234443221100
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHH-cCCcEEEEecccccccc---------c----ccccCCCCC-CCCC
Q 037222 225 EKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSL-GEKRFVLLLDDLWERVD---------L----TKVGVPLPG-PQNT 289 (904)
Q Consensus 225 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~r~LlVlDdv~~~~~---------~----~~~~~~l~~-~~~~ 289 (904)
. .....+.....+.+.. ...+.++++|++..... . ..+...+.+ ....
T Consensus 83 ----------------~-~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~ 145 (274)
T 2x8a_A 83 ----------------M-YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQ 145 (274)
T ss_dssp ----------------S-TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTT
T ss_pred ----------------h-hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccC
Confidence 0 0001112222333322 34678999999964210 0 011111110 1123
Q ss_pred CcEEEEEecchhhhccc-----cCCceeecccCCHHHHHHHHHHhhC
Q 037222 290 TSKVVFATRFIDVCGSM-----EADRKFLVACLSEKDAWELFREKVG 331 (904)
Q Consensus 290 gs~IivTtR~~~v~~~~-----~~~~~~~l~~L~~~e~~~Lf~~~~~ 331 (904)
..-++.+|...++.... .-...+.++..+.++-.++|.....
T Consensus 146 ~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 146 QVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp CEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred CEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 34456677766653221 1235678888899998899887764
No 233
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.62 E-value=0.0089 Score=71.62 Aligned_cols=153 Identities=18% Similarity=0.148 Sum_probs=85.1
Q ss_pred ccccchHHHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCH
Q 037222 158 RTVVGLQSQLEQVWRCLVE-------------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRL 224 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 224 (904)
.+++|.+..++++.+++.. .....|.|+|++|+||||||+.++... ...| +.+..+
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l---~~~~---i~v~~~----- 272 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFF---FLINGP----- 272 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT---TCEE---EEEEHH-----
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCcE---EEEEch-----
Confidence 4589999888888887642 234578999999999999999998875 2222 333321
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcCCcEEEEecccccccc-------------cccccCCCCC-CCCCC
Q 037222 225 EKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSLGEKRFVLLLDDLWERVD-------------LTKVGVPLPG-PQNTT 290 (904)
Q Consensus 225 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~r~LlVlDdv~~~~~-------------~~~~~~~l~~-~~~~g 290 (904)
++ . + .. ...........+.......+.++++|++..... ...+...+.+ ....+
T Consensus 273 -~l----~---~-~~---~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~ 340 (806)
T 1ypw_A 273 -EI----M---S-KL---AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAH 340 (806)
T ss_dssp -HH----S---S-SS---TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSC
T ss_pred -Hh----h---h-hh---hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhccccc
Confidence 11 0 0 00 111112222233333345688999999953210 0111111110 11234
Q ss_pred cEEEEEecchhh-hcccc----CCceeecccCCHHHHHHHHHHhhCcc
Q 037222 291 SKVVFATRFIDV-CGSME----ADRKFLVACLSEKDAWELFREKVGEE 333 (904)
Q Consensus 291 s~IivTtR~~~v-~~~~~----~~~~~~l~~L~~~e~~~Lf~~~~~~~ 333 (904)
..||.||..... ...+. -...+.+...+.++-.+++...+...
T Consensus 341 v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~ 388 (806)
T 1ypw_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNM 388 (806)
T ss_dssp CEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTS
T ss_pred EEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcC
Confidence 456666665432 11111 12456788889999999988776543
No 234
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.61 E-value=0.031 Score=57.83 Aligned_cols=171 Identities=19% Similarity=0.202 Sum_probs=88.3
Q ss_pred ccccchHHHHHHHHHHHh---c---------CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHH
Q 037222 158 RTVVGLQSQLEQVWRCLV---E---------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 225 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 225 (904)
.+++|.+..+.++.+... . .-.+-+.|+|++|+||||||+.++... . ...+.+...
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~-~-----~~~i~~~~~------ 107 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA-R-----VPFITASGS------ 107 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT-T-----CCEEEEEHH------
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc-C-----CCEEEecHH------
Confidence 467898877666655432 1 011238999999999999999999876 2 123333221
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHH-cCCcEEEEecccccc------------cc----cccccCCCCCC-C
Q 037222 226 KIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSL-GEKRFVLLLDDLWER------------VD----LTKVGVPLPGP-Q 287 (904)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~r~LlVlDdv~~~------------~~----~~~~~~~l~~~-~ 287 (904)
.+ .... . .........+.+.. ...+.++|+|++... .. ...+...+.+. .
T Consensus 108 ~~----~~~~-------~-~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~ 175 (278)
T 1iy2_A 108 DF----VEMF-------V-GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 175 (278)
T ss_dssp HH----HHST-------T-THHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCT
T ss_pred HH----HHHH-------h-hHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC
Confidence 11 1100 0 01112222233332 345789999999521 00 11122222201 1
Q ss_pred CCCcEEEEEecchhhhcc--c---cCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCch
Q 037222 288 NTTSKVVFATRFIDVCGS--M---EADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLP 356 (904)
Q Consensus 288 ~~gs~IivTtR~~~v~~~--~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 356 (904)
.....++.||...++... . .-...+.+...+.++-.+++...+.......... ...+++.+.|..
T Consensus 176 ~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~----~~~la~~~~G~~ 245 (278)
T 1iy2_A 176 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 245 (278)
T ss_dssp TCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred CCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccC----HHHHHHHcCCCC
Confidence 122344556665554221 1 1234778888898888888877664322122222 234666676654
No 235
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.58 E-value=0.012 Score=67.13 Aligned_cols=46 Identities=30% Similarity=0.359 Sum_probs=35.9
Q ss_pred ccccchHHHHHHHHHHHhc------CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 158 RTVVGLQSQLEQVWRCLVE------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.+++|.+.....+.+.+.- .....+.++|++|+||||||+.++...
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578888877777554431 245689999999999999999999876
No 236
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.57 E-value=0.04 Score=56.08 Aligned_cols=171 Identities=18% Similarity=0.209 Sum_probs=87.6
Q ss_pred ccccchHHHHHHHHHHHh---c---------CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHH
Q 037222 158 RTVVGLQSQLEQVWRCLV---E---------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 225 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 225 (904)
.+++|.+..+.++.+... . .-.+-+.|+|++|+||||||+.++... . . ..+.+.. .
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~-~--~---~~i~~~~------~ 83 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA-R--V---PFITASG------S 83 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT-T--C---CEEEEEH------H
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh-C--C---CEEEeeH------H
Confidence 457888776665554332 1 112238999999999999999999876 2 1 2233321 1
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHc-CCcEEEEeccccccc------------c----cccccCCCCC-CC
Q 037222 226 KIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSLG-EKRFVLLLDDLWERV------------D----LTKVGVPLPG-PQ 287 (904)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~~r~LlVlDdv~~~~------------~----~~~~~~~l~~-~~ 287 (904)
.+ .... . .........+.+... ..+.++++|++.... . ...+...+.+ ..
T Consensus 84 ~~----~~~~-------~-~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~ 151 (254)
T 1ixz_A 84 DF----VEMF-------V-GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 151 (254)
T ss_dssp HH----HHSC-------T-THHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT
T ss_pred HH----HHHH-------h-hHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC
Confidence 11 1100 0 011122233333332 456899999995210 0 1122112210 11
Q ss_pred CCCcEEEEEecchhhhcc-c----cCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCch
Q 037222 288 NTTSKVVFATRFIDVCGS-M----EADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLP 356 (904)
Q Consensus 288 ~~gs~IivTtR~~~v~~~-~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 356 (904)
....-++.||...++... . .-...+.++..+.++-.+++...+.......... ...+++.+.|.-
T Consensus 152 ~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~----~~~la~~~~G~~ 221 (254)
T 1ixz_A 152 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 221 (254)
T ss_dssp TCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred CCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccC----HHHHHHHcCCCC
Confidence 122344556666555321 1 1234678888888888888877664322122222 234666676653
No 237
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.51 E-value=0.021 Score=63.81 Aligned_cols=168 Identities=19% Similarity=0.199 Sum_probs=90.4
Q ss_pred ccccchHHHHHHHHHHHh---cC---------CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHH
Q 037222 158 RTVVGLQSQLEQVWRCLV---EE---------SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE 225 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~---~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~ 225 (904)
.+++|.+..+.++.+... .. -.+-+.|+|++|+||||||+.++... . . ..+.+..+.-.+
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~-~--~---~~i~i~g~~~~~-- 102 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA-R--V---PFITASGSDFVE-- 102 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT-T--C---CEEEEEGGGGTS--
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh-C--C---CEEEEehhHHHH--
Confidence 468898887776665542 21 12348999999999999999999876 2 1 233443321100
Q ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHcC----CcEEEEeccccccc------------c----cccccCCCCC
Q 037222 226 KIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSLGE----KRFVLLLDDLWERV------------D----LTKVGVPLPG 285 (904)
Q Consensus 226 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l~~----~r~LlVlDdv~~~~------------~----~~~~~~~l~~ 285 (904)
.........+...++. .+.++++|++.... . ...+...+.+
T Consensus 103 -------------------~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg 163 (499)
T 2dhr_A 103 -------------------MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDG 163 (499)
T ss_dssp -------------------SCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGG
T ss_pred -------------------hhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcc
Confidence 0011112233333332 35799999995321 0 1122212210
Q ss_pred -CCCCCcEEEEEecchhhhcc--c---cCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCch
Q 037222 286 -PQNTTSKVVFATRFIDVCGS--M---EADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLP 356 (904)
Q Consensus 286 -~~~~gs~IivTtR~~~v~~~--~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlP 356 (904)
....+..|+.||...++... . .-...+.++..+.++-.+++..++.......... ...|++.+.|..
T Consensus 164 ~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 164 FEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 236 (499)
T ss_dssp CCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSST----THHHHTTSCSCC
T ss_pred cccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHH----HHHHHHhcCCCC
Confidence 11234456666666655321 1 1234778888898888888877764322111112 234666677754
No 238
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.41 E-value=0.0016 Score=67.52 Aligned_cols=68 Identities=26% Similarity=0.382 Sum_probs=45.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEe--cCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVV--SKDLRLEKIQDDIGKKIGLSDDSWKNKSFEEKAVDILR 256 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~v--s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 256 (904)
-+++.|+|++|+||||||.+++... .. .++|+++ .+..+ . ...+.+.....+.+
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~-G~-----~VlyIs~~~eE~v~-------------~-----~~~~le~~l~~i~~ 178 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEAL-GG-----KDKYATVRFGEPLS-------------G-----YNTDFNVFVDDIAR 178 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHH-HT-----TSCCEEEEBSCSST-------------T-----CBCCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhC-CC-----CEEEEEecchhhhh-------------h-----hhcCHHHHHHHHHH
Confidence 3567899999999999999998752 11 2345665 33211 0 01355666667777
Q ss_pred HHcCCcEEEEecccc
Q 037222 257 SLGEKRFVLLLDDLW 271 (904)
Q Consensus 257 ~l~~~r~LlVlDdv~ 271 (904)
.+...+ +||+|++.
T Consensus 179 ~l~~~~-LLVIDsI~ 192 (331)
T 2vhj_A 179 AMLQHR-VIVIDSLK 192 (331)
T ss_dssp HHHHCS-EEEEECCT
T ss_pred HHhhCC-EEEEeccc
Confidence 776666 99999984
No 239
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.37 E-value=0.0075 Score=59.93 Aligned_cols=87 Identities=16% Similarity=0.175 Sum_probs=52.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCC----------CCCCCCCH
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSD----------DSWKNKSF 247 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~----------~~~~~~~~ 247 (904)
.-.++.|+|.+|+||||||..++. . . -..++|+.....++...+.. +.+..+... ........
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-~-~----~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-L-S----GKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQ 91 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-H-H----CSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-H-c----CCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHH
Confidence 346899999999999999999987 3 1 14678888776556655543 333332210 00011112
Q ss_pred HHHHHHHHHHHcCCcEEEEecccc
Q 037222 248 EEKAVDILRSLGEKRFVLLLDDLW 271 (904)
Q Consensus 248 ~~~~~~l~~~l~~~r~LlVlDdv~ 271 (904)
......++..++.+.-++|+|.+-
T Consensus 92 ~~~~~~~~~l~~~~~~lliiD~~~ 115 (220)
T 2cvh_A 92 RRVIGSLKKTVDSNFALVVVDSIT 115 (220)
T ss_dssp HHHHHHHHHHCCTTEEEEEEECCC
T ss_pred HHHHHHHHHHhhcCCCEEEEcCcH
Confidence 234444444444457788899873
No 240
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.34 E-value=0.0088 Score=60.49 Aligned_cols=92 Identities=14% Similarity=0.209 Sum_probs=55.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCC----CCCEEEEEEecCCCCHHHHHHHHHHHhCCCCC----C---CCCCC
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPT----NFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDD----S---WKNKS 246 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~----~---~~~~~ 246 (904)
.-.++.|+|++|+|||||+..++... .... .-..++|+.....++...+. .+++.++.... . ....+
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~-~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~ 100 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTC-QLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFN 100 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHT-TSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-hCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCC
Confidence 34689999999999999999998864 1111 23578898877665555443 34445543210 0 01122
Q ss_pred HHH---HHHHHHHHHc-CCcEEEEecccc
Q 037222 247 FEE---KAVDILRSLG-EKRFVLLLDDLW 271 (904)
Q Consensus 247 ~~~---~~~~l~~~l~-~~r~LlVlDdv~ 271 (904)
..+ ....+.+.+. .+.-+||+|.+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~lliiD~~~ 129 (243)
T 1n0w_A 101 TDHQTQLLYQASAMMVESRYALLIVDSAT 129 (243)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEeCch
Confidence 222 2233444443 467788899873
No 241
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.26 E-value=0.01 Score=63.23 Aligned_cols=87 Identities=16% Similarity=0.134 Sum_probs=58.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCC---CCCCCHHHHHHHH
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDDS---WKNKSFEEKAVDI 254 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 254 (904)
.-.++.|.|++|+||||||.+++... .. .-..++|++....++.. .++.++...+. ....+.++....+
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~-~~--~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~ 131 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEA-QK--MGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIV 131 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHH-HH--TTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-Hh--cCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHH
Confidence 35799999999999999999998876 21 12347888877776654 45556544321 1234556666666
Q ss_pred HHHHc-CCcEEEEeccccc
Q 037222 255 LRSLG-EKRFVLLLDDLWE 272 (904)
Q Consensus 255 ~~~l~-~~r~LlVlDdv~~ 272 (904)
...++ .+.-++|+|.+-.
T Consensus 132 ~~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 132 DELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHHHTSCCSEEEEECTTT
T ss_pred HHHhhhcCCCeEEehHhhh
Confidence 55553 5566899999843
No 242
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.13 E-value=0.016 Score=61.54 Aligned_cols=91 Identities=18% Similarity=0.321 Sum_probs=57.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCC----CCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCC-------CCCCC
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPT----NFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDDS-------WKNKS 246 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-------~~~~~ 246 (904)
.-.++.|+|.+|+||||||.+++... .... .-..++|++....++..++.+ +++.++...+. ....+
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~-~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~ 183 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNV-QLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAIN 183 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHT-TSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHH-hcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCC
Confidence 34689999999999999999998765 1111 124789999888887776654 45555543210 01122
Q ss_pred HH---HHHHHHHHHHc--CCcEEEEeccc
Q 037222 247 FE---EKAVDILRSLG--EKRFVLLLDDL 270 (904)
Q Consensus 247 ~~---~~~~~l~~~l~--~~r~LlVlDdv 270 (904)
.+ +....+...++ .+.-+||+|.+
T Consensus 184 ~~~~~~~l~~l~~~~~~~~~~~lvVIDsl 212 (324)
T 2z43_A 184 TDHQIAIVDDLQELVSKDPSIKLIVVDSV 212 (324)
T ss_dssp HHHHHHHHHHHHHHHHHCTTEEEEEETTT
T ss_pred HHHHHHHHHHHHHHHHhccCCCEEEEeCc
Confidence 22 23444555553 45678888887
No 243
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.12 E-value=0.021 Score=61.00 Aligned_cols=58 Identities=21% Similarity=0.336 Sum_probs=42.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCC----CCCEEEEEEecCCCCHHHHHHHHHHHhCC
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPT----NFDCVIWVVVSKDLRLEKIQDDIGKKIGL 237 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----~f~~~~wv~vs~~~~~~~~~~~i~~~l~~ 237 (904)
.-.++.|+|.+|+||||||.+++... .... .-..++|++....++..++.. +++.++.
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~-~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~ 182 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTA-QLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNV 182 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHT-TSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-hcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCC
Confidence 45789999999999999999998874 1111 234789999888878776654 4455544
No 244
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.91 E-value=0.0077 Score=62.93 Aligned_cols=26 Identities=27% Similarity=0.377 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
....+.++|++|+|||+||+.+++..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34678899999999999999999987
No 245
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.87 E-value=0.0071 Score=63.58 Aligned_cols=41 Identities=20% Similarity=0.297 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHhcC---CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 163 LQSQLEQVWRCLVEE---SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 163 r~~~~~~l~~~L~~~---~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
+...++.+.+++... ....+.++|++|+|||+||+.+++..
T Consensus 133 ~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp HHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 334455555666542 24678899999999999999999976
No 246
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.87 E-value=0.022 Score=58.84 Aligned_cols=87 Identities=11% Similarity=0.122 Sum_probs=56.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCC---CCCCHHHH-HHHHH
Q 037222 180 GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDDSW---KNKSFEEK-AVDIL 255 (904)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~-~~~l~ 255 (904)
.++-|.|++|+||||||.+++... .....-..++||+.-+.++.. .+++++...+.. ...+.++. ...+.
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~-~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSY-MRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH-HHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH-HhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 478999999999999999887776 211112468999988887764 367777654321 22344554 33322
Q ss_pred HH--H-cCCcEEEEeccccc
Q 037222 256 RS--L-GEKRFVLLLDDLWE 272 (904)
Q Consensus 256 ~~--l-~~~r~LlVlDdv~~ 272 (904)
.. + .++.-++|+|-+-.
T Consensus 103 ~l~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HHHTCCTTCCEEEEEECSTT
T ss_pred HHHHhhccCceEEEEecccc
Confidence 22 2 45678999999843
No 247
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.74 E-value=0.025 Score=60.44 Aligned_cols=86 Identities=20% Similarity=0.181 Sum_probs=56.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCC---CCCCCHHHHHHHH
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDDS---WKNKSFEEKAVDI 254 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 254 (904)
.-.++.|.|.+|+||||||.+++..... .-..++|++....++.. .++.++...+. ....+.++....+
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~---~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~ 131 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQA---AGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIA 131 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 4578999999999999999999876521 22458899888776653 24555543221 1223455555555
Q ss_pred HHHHc-CCcEEEEecccc
Q 037222 255 LRSLG-EKRFVLLLDDLW 271 (904)
Q Consensus 255 ~~~l~-~~r~LlVlDdv~ 271 (904)
....+ .+.-+||+|.+-
T Consensus 132 ~~l~~~~~~~lIVIDsl~ 149 (349)
T 2zr9_A 132 DMLVRSGALDIIVIDSVA 149 (349)
T ss_dssp HHHHTTTCCSEEEEECGG
T ss_pred HHHHhcCCCCEEEEcChH
Confidence 54443 356699999984
No 248
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.74 E-value=0.013 Score=70.16 Aligned_cols=46 Identities=24% Similarity=0.364 Sum_probs=37.4
Q ss_pred ccccchHHHHHHHHHHHhc---------CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 158 RTVVGLQSQLEQVWRCLVE---------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
..++|.+..++.+...+.. .....+.++|++|+|||++|+.+++..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 4578999988888877653 123478999999999999999999876
No 249
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.63 E-value=0.0041 Score=61.56 Aligned_cols=114 Identities=17% Similarity=-0.033 Sum_probs=62.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHH
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRS 257 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~ 257 (904)
.-.++.|.|..|+||||++..+..+. .. ... .++.+...... . -...+++.++............+..+.+.+.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~-~~-~g~-kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~ 84 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRL-EY-ADV-KYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEILNYIMSN 84 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHH-HH-TTC-CEEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHST
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHH-Hh-cCC-EEEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHHHHHHHH
Confidence 34788899999999999999888877 21 222 33444333221 1 1223455555433222222334444444444
Q ss_pred HcCCcE-EEEecccccc--cccccccCCCCCCCCCCcEEEEEecchh
Q 037222 258 LGEKRF-VLLLDDLWER--VDLTKVGVPLPGPQNTTSKVVFATRFID 301 (904)
Q Consensus 258 l~~~r~-LlVlDdv~~~--~~~~~~~~~l~~~~~~gs~IivTtR~~~ 301 (904)
+.+.++ +||+|.+..- ...+.+ ..+. + .|..||+|-+..+
T Consensus 85 ~~~~~~dvViIDEaQ~l~~~~ve~l-~~L~-~--~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 85 SFNDETKVIGIDEVQFFDDRICEVA-NILA-E--NGFVVIISGLDKN 127 (223)
T ss_dssp TSCTTCCEEEECSGGGSCTHHHHHH-HHHH-H--TTCEEEEECCSBC
T ss_pred hhCCCCCEEEEecCccCcHHHHHHH-HHHH-h--CCCeEEEEecccc
Confidence 444444 9999999642 122222 2222 1 3678999988544
No 250
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.60 E-value=0.013 Score=57.33 Aligned_cols=42 Identities=19% Similarity=0.456 Sum_probs=34.0
Q ss_pred chHHHHHHHHHHHhc---CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 162 GLQSQLEQVWRCLVE---ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 162 Gr~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.|++.++++.+.+.. ....+|+|.|..|+||||+++.+....
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp CHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 356677778777764 345799999999999999999998865
No 251
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.60 E-value=0.014 Score=70.70 Aligned_cols=45 Identities=27% Similarity=0.414 Sum_probs=37.2
Q ss_pred cccchHHHHHHHHHHHhcC---------CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 159 TVVGLQSQLEQVWRCLVEE---------SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 159 ~~vGr~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.++|.+..+..+...+... ....+.|+|+.|+|||++|+.+++..
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 5799999888888877531 23578999999999999999999876
No 252
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.58 E-value=0.023 Score=60.24 Aligned_cols=92 Identities=16% Similarity=0.252 Sum_probs=56.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccC-----------CCCC--CEEEEEEecCCCCHHHHHHHHHHHhCCCCCC---
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLES-----------PTNF--DCVIWVVVSKDLRLEKIQDDIGKKIGLSDDS--- 241 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-----------~~~f--~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~--- 241 (904)
.-.++.|.|.+|+||||||.+++...... .... ..++|++....++.+++.+ +++.++...+.
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhc
Confidence 45789999999999999999988763110 0111 4789999888887777664 44555543210
Q ss_pred ----CCCCCHH---HHHHHHHHHHcC--CcEEEEeccc
Q 037222 242 ----WKNKSFE---EKAVDILRSLGE--KRFVLLLDDL 270 (904)
Q Consensus 242 ----~~~~~~~---~~~~~l~~~l~~--~r~LlVlDdv 270 (904)
....+.+ +....+...++. +.-+||+|.+
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl 213 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSL 213 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECS
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECc
Confidence 0112222 233444455533 4557778876
No 253
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.52 E-value=0.064 Score=57.32 Aligned_cols=163 Identities=11% Similarity=-0.080 Sum_probs=98.4
Q ss_pred HHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCCCCCCHHHH
Q 037222 171 WRCLVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDDSWKNKSFEEK 250 (904)
Q Consensus 171 ~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 250 (904)
.+.+...-.++..++|..|.||++.++.+.... . ...|+....+.+....++.++
T Consensus 10 ~~~l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~-~-~~~~~~~~~~~~~~~~~~~~l----------------------- 64 (343)
T 1jr3_D 10 RAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVA-A-AQGFEEHHTFSIDPNTDWNAI----------------------- 64 (343)
T ss_dssp HHHHHHCCCSEEEEEESCHHHHHHHHHHHHHHH-H-HHTCCEEEEEECCTTCCHHHH-----------------------
T ss_pred HHHHhcCCCcEEEEECCcHHHHHHHHHHHHHHH-H-hCCCCeeEEEEecCCCCHHHH-----------------------
Confidence 334443456789999999999999999998865 1 224433222223333333333
Q ss_pred HHHHHH-HHcCCcEEEEeccccc---ccccccccCCCCCCCCCCcEEEEEecc-------hhhhcc-ccCCceeecccCC
Q 037222 251 AVDILR-SLGEKRFVLLLDDLWE---RVDLTKVGVPLPGPQNTTSKVVFATRF-------IDVCGS-MEADRKFLVACLS 318 (904)
Q Consensus 251 ~~~l~~-~l~~~r~LlVlDdv~~---~~~~~~~~~~l~~~~~~gs~IivTtR~-------~~v~~~-~~~~~~~~l~~L~ 318 (904)
.+.+.. -+-+++-++|+|+++. ...++.+...+. ....++.+|++|.. ..+... ......++..+++
T Consensus 65 ~~~~~~~plf~~~kvvii~~~~~kl~~~~~~aLl~~le-~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~ 143 (343)
T 1jr3_D 65 FSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTG-LLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPE 143 (343)
T ss_dssp HHHHHHHHHCCSCEEEEEECCSSCCCTTHHHHHHHHHT-TCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCC
T ss_pred HHHhcCcCCccCCeEEEEECCCCCCChHHHHHHHHHHh-cCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCC
Confidence 222221 2345677888999865 244555555554 33456777776643 123222 2345688999999
Q ss_pred HHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCchhHHHHH
Q 037222 319 EKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGLPLALITI 362 (904)
Q Consensus 319 ~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 362 (904)
.++....+.+.+....... -.+.+..+++.++|...++...
T Consensus 144 ~~~l~~~l~~~~~~~g~~i---~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 144 QAQLPRWVAARAKQLNLEL---DDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp TTHHHHHHHHHHHHTTCEE---CHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHhchHHHHHHHH
Confidence 9999888887764322111 1356778999999988777553
No 254
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.48 E-value=0.015 Score=59.70 Aligned_cols=46 Identities=13% Similarity=0.168 Sum_probs=34.3
Q ss_pred ccccchHHHHHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 158 RTVVGLQSQLEQVWRCLVE--ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
..++|.+..+.++.+.+.. .....|.|+|.+|+|||++|+.+++..
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhc
Confidence 3578999888888776653 233567799999999999999999876
No 255
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.48 E-value=0.032 Score=59.61 Aligned_cols=86 Identities=17% Similarity=0.137 Sum_probs=55.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCC---CCCCHHHHHHHH
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDDSW---KNKSFEEKAVDI 254 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 254 (904)
.-.++.|.|.+|+||||||.+++..... .-..++|++....++... ++.++...+.+ ...+.++....+
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~---~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~ 133 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 133 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHH
Confidence 4568999999999999999998877621 123688999887776442 44555432211 122345554444
Q ss_pred HHHH-cCCcEEEEecccc
Q 037222 255 LRSL-GEKRFVLLLDDLW 271 (904)
Q Consensus 255 ~~~l-~~~r~LlVlDdv~ 271 (904)
.... ..+.-+||+|.+-
T Consensus 134 ~~l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 134 DALARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHHHTCCSEEEEECGG
T ss_pred HHHHhccCCCEEEEcCHH
Confidence 4443 3455689999983
No 256
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.46 E-value=0.036 Score=59.45 Aligned_cols=86 Identities=17% Similarity=0.130 Sum_probs=57.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCC---CCCCCHHHHHHHH
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDDS---WKNKSFEEKAVDI 254 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~~~l 254 (904)
.-.++.|.|.+|+||||||.+++..... .-..++|++....++.. .++.++...+. ....+.++....+
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~---~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l 144 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQK---AGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIM 144 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHH---CCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHH
Confidence 3468889999999999999998877621 22368999988777654 24555543221 1223556666666
Q ss_pred HHHHc-CCcEEEEecccc
Q 037222 255 LRSLG-EKRFVLLLDDLW 271 (904)
Q Consensus 255 ~~~l~-~~r~LlVlDdv~ 271 (904)
....+ .+.-+||+|.+-
T Consensus 145 ~~l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 145 ELLVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHHHTTTCCSEEEEECTT
T ss_pred HHHHhcCCCCEEEEeChH
Confidence 65554 345689999983
No 257
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.34 E-value=0.017 Score=51.91 Aligned_cols=56 Identities=25% Similarity=0.361 Sum_probs=40.6
Q ss_pred cEeecccCccc--ccchhhhcCCCCcEeeccccccccccchhhhcCCCCCceeeecccCCc
Q 037222 592 ELFDISRTEIQ--ELPEELKLLVNLKCLNLRWTSKLIRIPRQLISNSSGLRVLRMFATGYE 650 (904)
Q Consensus 592 ~~L~l~~~~i~--~Lp~~~~~L~~L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~~~~~~ 650 (904)
..++.+++.++ .+|..+. .+|++|+|++| .++.+|.+++..+++|+.|++.+|...
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCC-cCCccChhhhhhccccCEEEecCCCee
Confidence 35666777776 7775543 46888888887 778888777778888888888877554
No 258
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.28 E-value=0.049 Score=56.62 Aligned_cols=86 Identities=14% Similarity=0.089 Sum_probs=47.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecC-CCCHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHH
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSK-DLRLEKIQDDIGKKIGLSDDSWKNKSFEEKAVDILR 256 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~ 256 (904)
...+++|+|.+|+||||++..++... ...... .+.++.... .....+-+....+..+.+.. ...+...+...+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l-~~~~G~-~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~--~~~~~~~l~~al~- 178 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAIS-MLEKHK-KIAFITTDTYRIAAVEQLKTYAELLQAPLE--VCYTKEEFQQAKE- 178 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH-HHTTCC-CEEEEECCCSSTTHHHHHHHHHTTTTCCCC--BCSSHHHHHHHHH-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HHhcCC-EEEEEecCcccchHHHHHHHHHHhcCCCeE--ecCCHHHHHHHHH-
Confidence 45799999999999999999998876 221222 344554322 22333344444444444321 1223334333333
Q ss_pred HHcCCcEEEEecc
Q 037222 257 SLGEKRFVLLLDD 269 (904)
Q Consensus 257 ~l~~~r~LlVlDd 269 (904)
.+ .+.=++|+|-
T Consensus 179 ~~-~~~dlvIiDT 190 (296)
T 2px0_A 179 LF-SEYDHVFVDT 190 (296)
T ss_dssp HG-GGSSEEEEEC
T ss_pred Hh-cCCCEEEEeC
Confidence 33 3445777884
No 259
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.26 E-value=0.039 Score=55.14 Aligned_cols=48 Identities=29% Similarity=0.273 Sum_probs=31.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHH
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDI 231 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i 231 (904)
-.+++|.|.+|+|||||++.++..... .-..++|+.... ...++...+
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~---~~~~v~~~~~~~--~~~~~~~~~ 70 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLR---DGDPCIYVTTEE--SRDSIIRQA 70 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHH---HTCCEEEEESSS--CHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH---CCCeEEEEEccc--CHHHHHHHH
Confidence 468999999999999999999866511 112456665433 344444433
No 260
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.21 E-value=0.0091 Score=63.21 Aligned_cols=99 Identities=12% Similarity=0.140 Sum_probs=54.4
Q ss_pred HHHHHHhc-CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCC--CCCCCCC
Q 037222 169 QVWRCLVE-ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLS--DDSWKNK 245 (904)
Q Consensus 169 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~--~~~~~~~ 245 (904)
++++.+.. ..-..++|+|..|+|||||++.+.+........++ ++++-+.+... -..++.+.+... ....+..
T Consensus 163 raID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~~---Ev~~~~~~~~~~vV~atadep 238 (422)
T 3ice_A 163 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERPE---EVTEMQRLVKGEVVASTFDEP 238 (422)
T ss_dssp HHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCHH---HHHHHHTTCSSEEEEECTTSC
T ss_pred eeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCChH---HHHHHHHHhCeEEEEeCCCCC
Confidence 45555544 34568999999999999999998876521122333 34577776532 222333333100 0011111
Q ss_pred CHHHHH-----HHHHHHH--cCCcEEEEecccc
Q 037222 246 SFEEKA-----VDILRSL--GEKRFVLLLDDLW 271 (904)
Q Consensus 246 ~~~~~~-----~~l~~~l--~~~r~LlVlDdv~ 271 (904)
...... -.+.+++ +++.+||++||+-
T Consensus 239 ~~~r~~~a~~alt~AEyfrd~G~dVLil~DslT 271 (422)
T 3ice_A 239 ASRHVQVAEMVIEKAKRLVEHKKDVIILLDSIT 271 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCch
Confidence 111111 1122333 5899999999994
No 261
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.09 E-value=0.017 Score=56.74 Aligned_cols=39 Identities=23% Similarity=0.296 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 165 SQLEQVWRCLVE--ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 165 ~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
+-+++|.+.+.. ....+|+|+|+.|+|||||++.+....
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345556666553 356799999999999999999998876
No 262
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.08 E-value=0.01 Score=56.87 Aligned_cols=118 Identities=19% Similarity=0.119 Sum_probs=60.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCC---CCHHHHHHHHHHHhCCCCCCC--CCCC-------
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKD---LRLEKIQDDIGKKIGLSDDSW--KNKS------- 246 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~---~~~~~~~~~i~~~l~~~~~~~--~~~~------- 246 (904)
...|-|++..|.||||.|--+.-+.. ...+ .+.++...+. .....++..+.-.+......+ ...+
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~--g~G~-rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~ 104 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAV--GHGK-NVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAA 104 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHH--HTTC-CEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH--HCCC-eEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHH
Confidence 45677778888999999988887762 2233 3455543332 223334333310000000011 1111
Q ss_pred HHHHHHHHHHHHcCCc-EEEEecccccc-----cccccccCCCCCCCCCCcEEEEEecch
Q 037222 247 FEEKAVDILRSLGEKR-FVLLLDDLWER-----VDLTKVGVPLPGPQNTTSKVVFATRFI 300 (904)
Q Consensus 247 ~~~~~~~l~~~l~~~r-~LlVlDdv~~~-----~~~~~~~~~l~~~~~~gs~IivTtR~~ 300 (904)
........++.+.+.+ =|||||++-.. .+.+.+...+. .......||+|+|..
T Consensus 105 a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~-~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 105 CMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALN-ARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHH-TSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHH-hCcCCCEEEEECCCC
Confidence 1112233445554444 49999999431 22333333333 344567899999975
No 263
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.08 E-value=0.05 Score=58.11 Aligned_cols=92 Identities=23% Similarity=0.371 Sum_probs=53.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCC---CCC-CEEEEEEecCCCCHHHHHHHHHHHhCCCCC----------CCC
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESP---TNF-DCVIWVVVSKDLRLEKIQDDIGKKIGLSDD----------SWK 243 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~~f-~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~----------~~~ 243 (904)
.-.++.|+|..|+|||||+..++... ... ... ..++|++....+...++ ..+++..+.... ...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~-~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~ 207 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV-QLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFN 207 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT-TSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh-ccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCC
Confidence 45799999999999999999998875 111 111 24589987666544443 334554433210 000
Q ss_pred CCCHHHHHHHHHHHHc------CCcEEEEecccc
Q 037222 244 NKSFEEKAVDILRSLG------EKRFVLLLDDLW 271 (904)
Q Consensus 244 ~~~~~~~~~~l~~~l~------~~r~LlVlDdv~ 271 (904)
.....+....+...+. .+.-+||+|.+-
T Consensus 208 ~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~t 241 (349)
T 1pzn_A 208 SNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 241 (349)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSS
T ss_pred hHHHHHHHHHHHHHHHHhccccCCCCEEEEeCch
Confidence 1112233344444443 467788899874
No 264
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.06 E-value=0.09 Score=57.41 Aligned_cols=26 Identities=31% Similarity=0.503 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
...+|.++|.+|+||||++..++...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHH
Confidence 36899999999999999999998876
No 265
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.04 E-value=0.073 Score=57.74 Aligned_cols=92 Identities=13% Similarity=0.188 Sum_probs=53.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccC---CCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCC-------CCCCCH
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLES---PTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDDS-------WKNKSF 247 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-------~~~~~~ 247 (904)
.-.++.|+|.+|+|||||+..++-..... ...-..++|++....++...+. .+++.++..... ....+.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~gl~~~~vleni~~~~~~~~ 255 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFGLDPDDALNNVAYARAYNA 255 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcCCChHhHhhcEEEeccCCh
Confidence 35689999999999999999876443110 1123568999877766665543 366666543210 011122
Q ss_pred H---HHHHHHHHHH-cCCcEEEEeccc
Q 037222 248 E---EKAVDILRSL-GEKRFVLLLDDL 270 (904)
Q Consensus 248 ~---~~~~~l~~~l-~~~r~LlVlDdv 270 (904)
+ +....+...+ ..+.-+||+|.+
T Consensus 256 ~~~~~~l~~~~~~l~~~~~~llVIDs~ 282 (400)
T 3lda_A 256 DHQLRLLDAAAQMMSESRFSLIVVDSV 282 (400)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETG
T ss_pred HHHHHHHHHHHHHHHhcCCceEEecch
Confidence 2 2223333333 345678888886
No 266
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.04 E-value=0.045 Score=59.44 Aligned_cols=103 Identities=18% Similarity=0.146 Sum_probs=57.9
Q ss_pred CCCCCceEEEeecCcccccccchhhcCCCcccEEEeecCCCcccccC-ccccccccCcEeecccCcccccch-hhhcCCC
Q 037222 536 PTCPDLLTLFLDFNEELEMIADGFFQFMPSLKVLKISNCGNFTFQLP-LGMSKLGSLELFDISRTEIQELPE-ELKLLVN 613 (904)
Q Consensus 536 ~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~Lr~L~l~~~~~i~~~lp-~~i~~L~~L~~L~l~~~~i~~Lp~-~~~~L~~ 613 (904)
..|..|+.+.+. . .+..++...|.++..|+.+.+... ++ .++ ..+.++.+|+.+.+..+.++.++. .+.++.+
T Consensus 237 ~~~~~L~~i~lp-~-~v~~I~~~aF~~~~~l~~i~l~~~--i~-~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~ 311 (379)
T 4h09_A 237 YGMKALDEIAIP-K-NVTSIGSFLLQNCTALKTLNFYAK--VK-TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVK 311 (379)
T ss_dssp TTCSSCCEEEEC-T-TCCEECTTTTTTCTTCCEEEECCC--CS-EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTT
T ss_pred cCCccceEEEcC-C-CccEeCccccceeehhcccccccc--ce-eccccccccccccccccccccccceehhhhhcCCCC
Confidence 455566666654 2 245555555666666666666432 33 332 234556666666666665665543 3455666
Q ss_pred CcEeeccccccccccchhhhcCCCCCceeeec
Q 037222 614 LKCLNLRWTSKLIRIPRQLISNSSGLRVLRMF 645 (904)
Q Consensus 614 L~~L~l~~~~~l~~lp~~~i~~L~~L~~L~l~ 645 (904)
|+.+.|..+ ++.++..+|.++++|+.+.+.
T Consensus 312 L~~i~lp~~--l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 312 LSSVTLPTA--LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp CCEEECCTT--CCEECTTTTTTCTTCCCCCCC
T ss_pred CCEEEcCcc--ccEEHHHHhhCCCCCCEEEEC
Confidence 666666532 555665556666666666554
No 267
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=95.04 E-value=0.13 Score=56.27 Aligned_cols=100 Identities=18% Similarity=0.311 Sum_probs=64.0
Q ss_pred HHHHHHhc-CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCC-CHHHHHHHHHHHhCCC------C-
Q 037222 169 QVWRCLVE-ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDL-RLEKIQDDIGKKIGLS------D- 239 (904)
Q Consensus 169 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~------~- 239 (904)
++++.+.. .+-..++|+|..|+|||+|++++.+.. .+.+-+.++++-+.+.. .+.++.+++.+.-... .
T Consensus 142 r~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~--~~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rt 219 (482)
T 2ck3_D 142 KVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV--AKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKV 219 (482)
T ss_dssp HHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHT--TTTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCE
T ss_pred EEEecccccccCCeeeeecCCCCChHHHHHHHHHhh--HhhCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceE
Confidence 34555554 345688999999999999999999875 13455778888888765 4566777776653222 0
Q ss_pred ----CCCCCCCHHHH------HHHHHHHH---cCCcEEEEecccc
Q 037222 240 ----DSWKNKSFEEK------AVDILRSL---GEKRFVLLLDDLW 271 (904)
Q Consensus 240 ----~~~~~~~~~~~------~~~l~~~l---~~~r~LlVlDdv~ 271 (904)
.. .+...... .-.+.+++ +++..|+++||+-
T Consensus 220 vvV~~t-~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~Dsit 263 (482)
T 2ck3_D 220 ALVYGQ-MNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIF 263 (482)
T ss_dssp EEEEEC-TTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTH
T ss_pred EEEEEC-CCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 01 11221111 12233444 4789999999983
No 268
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.03 E-value=0.071 Score=53.08 Aligned_cols=57 Identities=26% Similarity=0.432 Sum_probs=36.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCC----CCCCEEEEEEecCCCCHHHHHHHHHHHhC
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESP----TNFDCVIWVVVSKDLRLEKIQDDIGKKIG 236 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~~f~~~~wv~vs~~~~~~~~~~~i~~~l~ 236 (904)
.-.+++|+|+.|+|||||++.++... ... ..-...+|+.....+.... ...+.+..+
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~-~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~~ 84 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMV-QLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRG 84 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT-TSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-hcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHcC
Confidence 34799999999999999999998754 111 1234678887655444433 333444443
No 269
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=94.88 E-value=0.024 Score=59.49 Aligned_cols=46 Identities=13% Similarity=0.211 Sum_probs=37.2
Q ss_pred ccccchHHHHHHHHHHHhc--CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 158 RTVVGLQSQLEQVWRCLVE--ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
..++|+...+.++.+.+.. .....|.|+|.+|+|||++|+.+++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 3578999998888887764 334557799999999999999999865
No 270
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.80 E-value=0.015 Score=55.44 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.+|.|.|++|+||||+|+.+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 578999999999999999999876
No 271
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.79 E-value=0.016 Score=54.98 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.+|+|.|+.|+||||+|+.+....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999876
No 272
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.75 E-value=0.03 Score=55.71 Aligned_cols=40 Identities=20% Similarity=0.305 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 164 QSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 164 ~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
++..+.+.+.+......+|+|+|.+|+|||||+..+....
T Consensus 23 ~~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 23 KRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3445555555555678899999999999999999998875
No 273
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.67 E-value=0.015 Score=55.20 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.+|+|.|++|+||||+|+.+ ...
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC
Confidence 47999999999999999999 543
No 274
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.60 E-value=0.022 Score=60.74 Aligned_cols=44 Identities=23% Similarity=0.357 Sum_probs=37.3
Q ss_pred ccccchHHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 158 RTVVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
..++|++..++.+...+..+ .-+.++|++|+|||+||+.+++..
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHT
T ss_pred cceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHh
Confidence 45789999998888887754 357789999999999999999876
No 275
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.55 E-value=0.039 Score=58.11 Aligned_cols=43 Identities=21% Similarity=0.237 Sum_probs=32.6
Q ss_pred cchHHHHHHHHHHHh----cCCceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 161 VGLQSQLEQVWRCLV----EESVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 161 vGr~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
|+.+.-.+++++.+. .+....|.|+|+.|+||||+++.++...
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 445555666666654 3456679999999999999999988765
No 276
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.49 E-value=0.029 Score=55.60 Aligned_cols=43 Identities=21% Similarity=0.248 Sum_probs=34.0
Q ss_pred cchHHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 161 VGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 161 vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
-+.++..+.+.+.+......+|+|+|.+|+|||||+..+....
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 12 AENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hhcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3445556666666655678899999999999999999998875
No 277
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.49 E-value=0.02 Score=55.87 Aligned_cols=26 Identities=38% Similarity=0.353 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
...+|.|+|+.|+||||+|+.+....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34689999999999999999999876
No 278
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.48 E-value=0.019 Score=55.47 Aligned_cols=26 Identities=31% Similarity=0.337 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.-.+++|+|+.|+|||||++.+....
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcc
Confidence 34689999999999999999998753
No 279
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.46 E-value=0.021 Score=54.48 Aligned_cols=22 Identities=32% Similarity=0.308 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 037222 180 GIIGLYGMGGVGKTTLLTHINN 201 (904)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~ 201 (904)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 280
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.37 E-value=0.12 Score=54.37 Aligned_cols=52 Identities=10% Similarity=0.063 Sum_probs=38.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHH
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKK 234 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 234 (904)
.-.++.|.|.+|+||||||.+++... .... ..++|++.- .+..++...+...
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~-a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNM-SDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHH-HTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH-HHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 44688999999999999999998776 2222 567777655 4567777777654
No 281
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.36 E-value=0.12 Score=56.68 Aligned_cols=100 Identities=20% Similarity=0.284 Sum_probs=64.8
Q ss_pred HHHHHhc-CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCC-CHHHHHHHHHHHhCCC-------CC
Q 037222 170 VWRCLVE-ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDL-RLEKIQDDIGKKIGLS-------DD 240 (904)
Q Consensus 170 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~ 240 (904)
+++.|.. .+-..++|.|..|+|||+|++++.+.. .+.+-+.++++-+.+.. ...++.+++.+.-... ..
T Consensus 155 vID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~--a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rt 232 (498)
T 1fx0_B 155 VVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNI--AKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKV 232 (498)
T ss_dssp THHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHT--TTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCE
T ss_pred EeeeecccccCCeEEeecCCCCCchHHHHHHHHHH--HhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccce
Confidence 4555544 345678999999999999999999875 13456788999888876 4667777776642221 00
Q ss_pred ----CCCCCCHH------HHHHHHHHHHc---CCcEEEEecccc
Q 037222 241 ----SWKNKSFE------EKAVDILRSLG---EKRFVLLLDDLW 271 (904)
Q Consensus 241 ----~~~~~~~~------~~~~~l~~~l~---~~r~LlVlDdv~ 271 (904)
...+.... ...-.+.++++ ++.+|+++||+-
T Consensus 233 vvV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsit 276 (498)
T 1fx0_B 233 ALVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIF 276 (498)
T ss_dssp EEEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 00111211 12234455664 579999999983
No 282
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.33 E-value=0.019 Score=54.49 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.+|+|+|+.|+||||+++.+....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999876
No 283
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.31 E-value=0.023 Score=54.55 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.+.|.|+|+.|+||||+|+.+....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999876
No 284
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.28 E-value=0.25 Score=54.18 Aligned_cols=26 Identities=23% Similarity=0.428 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
..++|.|+|.+|+||||++..++...
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999998877
No 285
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.28 E-value=0.024 Score=54.31 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
-.+++|+|+.|+|||||++.+....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3689999999999999999998865
No 286
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.22 E-value=0.035 Score=62.16 Aligned_cols=44 Identities=11% Similarity=0.175 Sum_probs=37.3
Q ss_pred ccccchHHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 158 RTVVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
+.++|.+..++.+...+..+ .-|.++|++|+|||+||+.+++..
T Consensus 22 ~~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHH
Confidence 45789999998888877654 467899999999999999999876
No 287
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.15 E-value=0.032 Score=54.39 Aligned_cols=27 Identities=30% Similarity=0.471 Sum_probs=24.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 177 ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
....+|+|+|+.|+||||+++.+....
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999999876
No 288
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.11 E-value=0.027 Score=54.41 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.+|.|.|++|+||||+|+.+....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999887
No 289
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.07 E-value=0.04 Score=59.79 Aligned_cols=46 Identities=22% Similarity=0.228 Sum_probs=35.8
Q ss_pred ccccchHHHHHHHHHHHhc------------------------------CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 158 RTVVGLQSQLEQVWRCLVE------------------------------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~------------------------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
..++|.+..++.+...+.. .....+.++|++|+|||++|+.+++..
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 4578888888888776620 123468899999999999999999876
No 290
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.06 E-value=0.041 Score=59.42 Aligned_cols=45 Identities=22% Similarity=0.200 Sum_probs=36.7
Q ss_pred cccchHHHHHHHHHHHh-------------c--CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 159 TVVGLQSQLEQVWRCLV-------------E--ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 159 ~~vGr~~~~~~l~~~L~-------------~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.++|.+..++.+...+. . .....|.++|++|+|||++|+.+++..
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 46899999888888773 1 134568899999999999999999876
No 291
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.05 E-value=0.023 Score=55.56 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
..+|+|.|+.|+||||+|+.+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998875
No 292
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.04 E-value=0.051 Score=56.29 Aligned_cols=27 Identities=26% Similarity=0.237 Sum_probs=23.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 177 ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
....+|+|+|..|+||||||+.+....
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999988776
No 293
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.02 E-value=0.11 Score=54.24 Aligned_cols=89 Identities=17% Similarity=0.223 Sum_probs=49.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHH--HHHHHHHHHhCCCCC-CCCCCCHHHH-HHH
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE--KIQDDIGKKIGLSDD-SWKNKSFEEK-AVD 253 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~--~~~~~i~~~l~~~~~-~~~~~~~~~~-~~~ 253 (904)
...+|+|+|.+|+||||++..++... ... . ..+.++... .+... +-+...++..+.+.- .....+.... ...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l-~~~-g-~kV~lv~~D-~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~a 178 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMF-VDE-G-KSVVLAAAD-TFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDA 178 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH-HHT-T-CCEEEEEEC-TTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHH-Hhc-C-CEEEEEccc-cccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHH
Confidence 45799999999999999999999877 221 1 234444432 33322 223344555443210 0112233333 234
Q ss_pred HHHHHcCCcEEEEeccc
Q 037222 254 ILRSLGEKRFVLLLDDL 270 (904)
Q Consensus 254 l~~~l~~~r~LlVlDdv 270 (904)
+...+..+.-++|+|-.
T Consensus 179 l~~a~~~~~dvvIiDtp 195 (306)
T 1vma_A 179 VAHALARNKDVVIIDTA 195 (306)
T ss_dssp HHHHHHTTCSEEEEEEC
T ss_pred HHHHHhcCCCEEEEECC
Confidence 44445555557888865
No 294
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.00 E-value=0.25 Score=51.67 Aligned_cols=96 Identities=16% Similarity=0.075 Sum_probs=50.9
Q ss_pred cchHHHHHHHHHHHhcC----CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHH--HHHH
Q 037222 161 VGLQSQLEQVWRCLVEE----SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDD--IGKK 234 (904)
Q Consensus 161 vGr~~~~~~l~~~L~~~----~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~--i~~~ 234 (904)
+|-...+..+...+... ...+|+|.|+.|+||||+|+.+.... .....-..+..+....-+-....+.. +...
T Consensus 70 ~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll-~~~~~~~~v~~i~~D~f~~~~~~l~~~~~~~~ 148 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALL-SRWPDHPNVEVITTDGFLYSNAKLEKQGLMKR 148 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHH-TTSTTCCCEEEEEGGGGBCCHHHHHHTTCGGG
T ss_pred hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHh-cccCCCCeEEEEeecccccchhhhhhHHHHhh
Confidence 44444455444444332 35599999999999999999998776 21111123444544332222222221 1111
Q ss_pred hCCCCCCCCCCCHHHHHHHHHHHHcCC
Q 037222 235 IGLSDDSWKNKSFEEKAVDILRSLGEK 261 (904)
Q Consensus 235 l~~~~~~~~~~~~~~~~~~l~~~l~~~ 261 (904)
.+. ....+.+.+...+.....++
T Consensus 149 ~g~----P~~~D~~~l~~~L~~L~~g~ 171 (321)
T 3tqc_A 149 KGF----PESYDMPSLLRVLNAIKSGQ 171 (321)
T ss_dssp TTS----GGGBCHHHHHHHHHHHHTTC
T ss_pred ccC----cccccHHHHHHHHHhhhccc
Confidence 111 13456666666666666665
No 295
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.98 E-value=0.033 Score=53.79 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
..+|.|.|++|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999876
No 296
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.97 E-value=0.14 Score=55.77 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
..+++|+|.+|+||||++..++...
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4789999999999999999999887
No 297
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.96 E-value=0.032 Score=53.03 Aligned_cols=25 Identities=24% Similarity=0.488 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
-.+|+|+|+.|+||||+++.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998764
No 298
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.94 E-value=0.22 Score=52.34 Aligned_cols=26 Identities=31% Similarity=0.454 Sum_probs=23.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
...+++|+|+.|+||||+++.++...
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999998876
No 299
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.92 E-value=0.03 Score=54.03 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.+|.|.|++|+||||+|+.+....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999876
No 300
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.88 E-value=0.029 Score=53.64 Aligned_cols=25 Identities=44% Similarity=0.430 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
..+|.|.|++|+||||+|+.+....
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999999876
No 301
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.87 E-value=0.032 Score=54.47 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
...+|+|+|+.|+|||||++.+....
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 45789999999999999999998875
No 302
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.82 E-value=0.036 Score=53.30 Aligned_cols=26 Identities=31% Similarity=0.438 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
...+|.|.|++|+||||+++.+....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999886
No 303
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.80 E-value=0.032 Score=54.54 Aligned_cols=25 Identities=20% Similarity=0.368 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
-.+++|+|+.|+|||||++.+....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3689999999999999999998864
No 304
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.78 E-value=0.035 Score=53.51 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHh
Q 037222 180 GIIGLYGMGGVGKTTLLTHINNK 202 (904)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~ 202 (904)
.+++|+|+.|+|||||++.+...
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 47899999999999999999864
No 305
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.78 E-value=0.18 Score=55.17 Aligned_cols=99 Identities=17% Similarity=0.249 Sum_probs=55.0
Q ss_pred HHHHhc-CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCC-CHHHHHHHHHHHhCCCCC----CCCC
Q 037222 171 WRCLVE-ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDL-RLEKIQDDIGKKIGLSDD----SWKN 244 (904)
Q Consensus 171 ~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~----~~~~ 244 (904)
++.|.. .+-..++|+|..|+|||||+..+.... . ...-+..+++.+.+.. ...++..++.+.-.+... ....
T Consensus 142 ID~L~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~-~-~~~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~ 219 (473)
T 1sky_E 142 VDLLAPYIKGGKIGLFGGAGVGKTVLIQELIHNI-A-QEHGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMN 219 (473)
T ss_dssp HHHHSCEETTCEEEEECCSSSCHHHHHHHHHHHH-H-HHTCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTT
T ss_pred HHHHhhhccCCEEEEECCCCCCccHHHHHHHhhh-h-hccCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCC
Confidence 444443 223468999999999999999998875 2 1223455777776654 344555555432100000 0011
Q ss_pred CCHHH-H-----HHHHHHHH---cCCcEEEEecccc
Q 037222 245 KSFEE-K-----AVDILRSL---GEKRFVLLLDDLW 271 (904)
Q Consensus 245 ~~~~~-~-----~~~l~~~l---~~~r~LlVlDdv~ 271 (904)
..... . .-.+.+++ +++..|+++||+.
T Consensus 220 d~pg~r~~~~~~~ltiAEyFrd~~G~~VLl~~D~it 255 (473)
T 1sky_E 220 EPPGARMRVALTGLTMAEYFRDEQGQDGLLFIDNIF 255 (473)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEECTH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 11111 1 11233333 5889999999994
No 306
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.75 E-value=0.026 Score=60.55 Aligned_cols=46 Identities=20% Similarity=0.340 Sum_probs=34.2
Q ss_pred ccccchHHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 158 RTVVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
..++|.+..+..+...+......-+.|+|.+|+|||++|+.+++..
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred hhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhC
Confidence 4589998866655444433233348899999999999999999876
No 307
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.73 E-value=0.036 Score=52.29 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
..+|+|.|+.|+||||+|+.+....
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999876
No 308
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.72 E-value=0.03 Score=53.27 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
..|.|.|++|+||||+|+.+....
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 368999999999999999999876
No 309
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.72 E-value=0.034 Score=54.31 Aligned_cols=23 Identities=35% Similarity=0.668 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 037222 181 IIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.|+|.|+.|+||||+++.+....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999886
No 310
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.71 E-value=0.036 Score=56.36 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.+|.|.|+.|+||||||+.++...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 478999999999999999999876
No 311
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.70 E-value=0.12 Score=52.07 Aligned_cols=48 Identities=19% Similarity=0.196 Sum_probs=32.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHH
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDD 230 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~ 230 (904)
.-.++.|.|.+|+||||||.+++..... .-..++|++... ...++.+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~---~~~~v~~~~~e~--~~~~~~~~ 69 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLK---MGEPGIYVALEE--HPVQVRQN 69 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHH---TTCCEEEEESSS--CHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEccC--CHHHHHHH
Confidence 3468999999999999999888766511 123577776544 34444433
No 312
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.70 E-value=0.036 Score=52.83 Aligned_cols=23 Identities=43% Similarity=0.580 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 037222 181 IIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.++|+|+.|+|||||++.++...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 313
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.68 E-value=0.23 Score=54.23 Aligned_cols=26 Identities=35% Similarity=0.332 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
...+|.++|.+|+||||++..++...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36799999999999999999998877
No 314
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.67 E-value=0.036 Score=56.06 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
...+|+|+|+.|+|||||++.+....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999999765
No 315
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.63 E-value=0.04 Score=52.88 Aligned_cols=24 Identities=29% Similarity=0.272 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHh
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNK 202 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~ 202 (904)
...|+|+|+.|+||||+++.+...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999999999987
No 316
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.61 E-value=0.039 Score=53.46 Aligned_cols=26 Identities=35% Similarity=0.392 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
...+|+|.|++|+||||+|+.+....
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999999876
No 317
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.61 E-value=0.17 Score=59.59 Aligned_cols=170 Identities=18% Similarity=0.283 Sum_probs=78.2
Q ss_pred ccccchHHHHHHHHHHHhc-------------CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCH
Q 037222 158 RTVVGLQSQLEQVWRCLVE-------------ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRL 224 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~ 224 (904)
..+.|.++.++++.+.+.- ...+-|.++|++|.|||.+|+++++.. ... ++.++ .
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~---~~~-----f~~v~----~ 544 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC---QAN-----FISIK----G 544 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT---TCE-----EEECC----H
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh---CCc-----eEEec----c
Confidence 4567888888777766531 123457899999999999999999986 211 23332 1
Q ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHH-cCCcEEEEeccccccc--------c--------cccccCCCCC-C
Q 037222 225 EKIQDDIGKKIGLSDDSWKNKSFEEKAVDILRSL-GEKRFVLLLDDLWERV--------D--------LTKVGVPLPG-P 286 (904)
Q Consensus 225 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~l-~~~r~LlVlDdv~~~~--------~--------~~~~~~~l~~-~ 286 (904)
.++ +.. +...++ ..++.+.+.- +..+.+|++|+++.-. + ...+...+.+ .
T Consensus 545 ~~l----~s~-------~vGese-~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~ 612 (806)
T 3cf2_A 545 PEL----LTM-------WFGESE-ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 612 (806)
T ss_dssp HHH----HTT-------TCSSCH-HHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSC
T ss_pred chh----hcc-------ccchHH-HHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCC
Confidence 121 111 122233 3444444444 4578999999996410 0 1111111211 1
Q ss_pred CCCCcEEEEEecchhhhc-c-c---cCCceeecccCCHHHHHHHHHHhhCccccCCCccHHHHHHHHHHHhCCc
Q 037222 287 QNTTSKVVFATRFIDVCG-S-M---EADRKFLVACLSEKDAWELFREKVGEETLQSHHDIVELAQIVAKECGGL 355 (904)
Q Consensus 287 ~~~gs~IivTtR~~~v~~-~-~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~Gl 355 (904)
...+.-||.||...+... . + .-...+.+..-+.++-.++|+.+.........-++ ..+++.+.|.
T Consensus 613 ~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl----~~la~~t~g~ 682 (806)
T 3cf2_A 613 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDL----EFLAKMTNGF 682 (806)
T ss_dssp SSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC-----------------
T ss_pred CCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCH----HHHHHhCCCC
Confidence 122333444555443321 1 1 12356677666666667777766644322222233 3455566554
No 318
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.61 E-value=0.04 Score=53.26 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
..+|+|.|++|+||||+|+.+....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998875
No 319
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.60 E-value=0.042 Score=53.97 Aligned_cols=26 Identities=31% Similarity=0.254 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
...+|+|+|+.|+|||||++.+....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45689999999999999999999875
No 320
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.59 E-value=0.042 Score=54.06 Aligned_cols=26 Identities=31% Similarity=0.386 Sum_probs=24.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
..++|.|.|++|+||||.|+.+++.+
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999887
No 321
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.58 E-value=0.032 Score=53.72 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
++++|+|+.|+|||||++.+....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999999775
No 322
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.57 E-value=0.035 Score=54.37 Aligned_cols=26 Identities=31% Similarity=0.539 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
...+|.|+|++|+||||+++.+....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34688999999999999999998875
No 323
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.52 E-value=0.039 Score=53.98 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 037222 180 GIIGLYGMGGVGKTTLLTHINN 201 (904)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~ 201 (904)
.+|+|.|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999987
No 324
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.50 E-value=0.047 Score=53.21 Aligned_cols=26 Identities=31% Similarity=0.377 Sum_probs=22.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHh
Q 037222 177 ESVGIIGLYGMGGVGKTTLLTHINNK 202 (904)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 202 (904)
....+|+|.|+.|+||||+|+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 35678999999999999999999874
No 325
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.50 E-value=0.047 Score=53.29 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
...+|+|.|+.|+||||+|+.+.+..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999999875
No 326
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.49 E-value=0.04 Score=53.95 Aligned_cols=25 Identities=36% Similarity=0.302 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
..+|+|+|+.|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 327
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.48 E-value=0.069 Score=55.34 Aligned_cols=26 Identities=35% Similarity=0.281 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
...+|.|.|++|+||||+|+.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998765
No 328
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.47 E-value=0.042 Score=52.72 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
..|+|.|++|+||||+|+.+.+..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999998865
No 329
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.47 E-value=0.045 Score=53.82 Aligned_cols=26 Identities=31% Similarity=0.394 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
...+|+|+|+.|+|||||++.+....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998875
No 330
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.47 E-value=0.032 Score=53.52 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.+|.|.|++|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999999876
No 331
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.40 E-value=0.043 Score=57.54 Aligned_cols=40 Identities=23% Similarity=0.424 Sum_probs=29.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEec
Q 037222 177 ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVS 219 (904)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs 219 (904)
++.+||+|.|-||+||||.+..+..-..+ ... .+.-|.+.
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~--~Gk-kVllID~D 85 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSI--LGK-RVLQIGCD 85 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHH--TTC-CEEEEEES
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHH--CCC-eEEEEecC
Confidence 47899999999999999999998877622 111 35556655
No 332
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.40 E-value=0.035 Score=52.60 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=19.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHH
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHIN 200 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~ 200 (904)
.-.+++|+|+.|+|||||++.++
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHc
Confidence 34689999999999999999643
No 333
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.39 E-value=0.041 Score=54.83 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.+|+|+|+.|+||||+|+.+....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998875
No 334
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.37 E-value=0.16 Score=65.38 Aligned_cols=86 Identities=17% Similarity=0.148 Sum_probs=57.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCC---CCCCHHHHHHHH
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDDSW---KNKSFEEKAVDI 254 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 254 (904)
..++|.|+|++|+||||||.++.... . ..=..++|+++.+.++... ++.++.+.+.. .....++..+.+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea-~--~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~ 1497 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAA-Q--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1497 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHH-H--TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-H--HcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHH
Confidence 46789999999999999999998876 2 2334578888888777666 44555332111 122334555555
Q ss_pred HHHH-cCCcEEEEecccc
Q 037222 255 LRSL-GEKRFVLLLDDLW 271 (904)
Q Consensus 255 ~~~l-~~~r~LlVlDdv~ 271 (904)
.... +.+.-+||+|.+.
T Consensus 1498 ~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1498 DALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCCCEEEEcChh
Confidence 5544 3567799999994
No 335
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.36 E-value=0.043 Score=53.30 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
..+|+|.|++|+||||+|+.+....
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999876
No 336
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.29 E-value=0.049 Score=53.49 Aligned_cols=24 Identities=25% Similarity=0.446 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.+|.|.|++|+||||+|+.+....
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999987
No 337
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.29 E-value=0.038 Score=52.26 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.+|.|.|+.|+||||+|+.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999876
No 338
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.28 E-value=0.049 Score=53.35 Aligned_cols=26 Identities=35% Similarity=0.548 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
...+|+|+|+.|+||||+|+.+....
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 35689999999999999999998764
No 339
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.25 E-value=0.045 Score=53.60 Aligned_cols=22 Identities=41% Similarity=0.527 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 037222 180 GIIGLYGMGGVGKTTLLTHINN 201 (904)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~ 201 (904)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 340
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.24 E-value=0.053 Score=59.31 Aligned_cols=46 Identities=22% Similarity=0.242 Sum_probs=36.6
Q ss_pred ccccchHHHHHHHHHHHhc--------------CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 158 RTVVGLQSQLEQVWRCLVE--------------ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
..++|.+..++.+...+.. ...+-|.++|++|+||||+|+.++...
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc
Confidence 4678998888888766632 124568899999999999999999886
No 341
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.20 E-value=0.039 Score=53.68 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.++++|+|+.|+|||||++.+....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3578999999999999999998765
No 342
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.19 E-value=0.07 Score=51.29 Aligned_cols=37 Identities=14% Similarity=0.078 Sum_probs=27.8
Q ss_pred HHHHHHHHhc-CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 167 LEQVWRCLVE-ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 167 ~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
+..+..++.. .....+.|+|++|+||||+|..+++..
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 4445555543 123479999999999999999999876
No 343
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.18 E-value=0.051 Score=52.43 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
..+|+|.|++|+||||+|+.+....
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999876
No 344
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.18 E-value=0.053 Score=50.81 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
..++++|.|..|+|||||+..+....
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 35789999999999999999998876
No 345
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.15 E-value=0.053 Score=55.35 Aligned_cols=25 Identities=32% Similarity=0.534 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
..+|.|.|++|+||||+|+.+....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999874
No 346
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.12 E-value=0.048 Score=53.13 Aligned_cols=25 Identities=28% Similarity=0.291 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
..+|.|.|++|+||||+|+.+....
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999876
No 347
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.11 E-value=0.052 Score=51.08 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 037222 181 IIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.|+|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
No 348
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.08 E-value=0.068 Score=54.29 Aligned_cols=26 Identities=35% Similarity=0.339 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
...+|.|+|++|+||||+|+.+....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 35689999999999999999999876
No 349
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.07 E-value=0.18 Score=52.38 Aligned_cols=89 Identities=20% Similarity=0.111 Sum_probs=49.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCC-CCHHHHHHHHHHHhCCCCCC-CCCCCHHHHHHHHHH
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKD-LRLEKIQDDIGKKIGLSDDS-WKNKSFEEKAVDILR 256 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~l~~ 256 (904)
..+++++|.+|+||||++..++... ... -..+.++..... ....+.+....+..+.+.-. ....+.........+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~-~~~--g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~ 174 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY-KKK--GFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVE 174 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH-HHT--TCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-HHC--CCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHH
Confidence 5789999999999999999998876 221 123455554322 22233344445555443110 022345555544455
Q ss_pred HHc-CCcEEEEeccc
Q 037222 257 SLG-EKRFVLLLDDL 270 (904)
Q Consensus 257 ~l~-~~r~LlVlDdv 270 (904)
.++ +..=++|+|-.
T Consensus 175 ~~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 175 KFLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHhCCCCEEEEeCC
Confidence 554 33336777764
No 350
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.06 E-value=0.053 Score=52.31 Aligned_cols=26 Identities=35% Similarity=0.548 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
...+|+|.|+.|+||||+|+.+....
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999998864
No 351
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.01 E-value=0.1 Score=52.53 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
...+|+|.|++|+||||+|+.+.+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999998875
No 352
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.00 E-value=0.037 Score=52.97 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=18.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
..+|.|.|++|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3579999999999999999998876
No 353
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.99 E-value=0.053 Score=52.39 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 037222 181 IIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
+|+|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999875
No 354
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.99 E-value=0.056 Score=52.14 Aligned_cols=26 Identities=19% Similarity=0.332 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
..++|+|+|+.|+|||||++.+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 45789999999999999999998765
No 355
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.95 E-value=0.047 Score=52.21 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
+.|.|+|+.|+|||||++.+....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 457899999999999999998775
No 356
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.94 E-value=0.23 Score=51.46 Aligned_cols=88 Identities=20% Similarity=0.187 Sum_probs=47.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHH--HHHHHHHHHhCCCCCC-CCCCCHHHHHHHHH
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLE--KIQDDIGKKIGLSDDS-WKNKSFEEKAVDIL 255 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~--~~~~~i~~~l~~~~~~-~~~~~~~~~~~~l~ 255 (904)
..+++|+|.+|+||||++..++... ... -..+.++... ..... .-+....+..+...-. ....++.++.....
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~-~~~--~~~v~l~~~d-~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l 173 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYY-KGK--GRRPLLVAAD-TQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHH-HHT--TCCEEEEECC-SSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-HHc--CCeEEEecCC-cccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHH
Confidence 4789999999999999999998887 221 1234444432 22222 1233444444433210 01234445543333
Q ss_pred HHH-cCCcEEEEeccc
Q 037222 256 RSL-GEKRFVLLLDDL 270 (904)
Q Consensus 256 ~~l-~~~r~LlVlDdv 270 (904)
..+ ....=++|+|-.
T Consensus 174 ~~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 174 EKARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHHTCCEEEEECC
T ss_pred HHHHhCCCCEEEEeCC
Confidence 333 244456778875
No 357
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.93 E-value=0.062 Score=49.98 Aligned_cols=27 Identities=33% Similarity=0.315 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 177 ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
..-.+++|+|+.|+|||||++.++.-.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 345799999999999999999998864
No 358
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.91 E-value=0.06 Score=54.66 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
...+|+|.|+.|+||||+|+.+....
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 55789999999999999999998865
No 359
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.91 E-value=0.35 Score=53.31 Aligned_cols=26 Identities=35% Similarity=0.567 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
...+++|+|..|+|||||++.++...
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 35699999999999999999998876
No 360
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.88 E-value=0.056 Score=53.00 Aligned_cols=26 Identities=23% Similarity=0.409 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998876
No 361
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.81 E-value=0.063 Score=52.75 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
..+|+|.|+.|+||||+|+.+....
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999876
No 362
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=92.76 E-value=0.63 Score=51.89 Aligned_cols=26 Identities=27% Similarity=0.459 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
...+|+|+|.+|+||||++..++...
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998776
No 363
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.74 E-value=0.059 Score=53.69 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
...|.|.|++|+||||+|+.+....
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3679999999999999999999875
No 364
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.70 E-value=0.06 Score=53.12 Aligned_cols=23 Identities=39% Similarity=0.524 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 037222 181 IIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.|+|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998876
No 365
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.69 E-value=0.069 Score=55.95 Aligned_cols=27 Identities=30% Similarity=0.294 Sum_probs=24.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 177 ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
....+|+|+|..|+|||||++.+..-.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 345799999999999999999998876
No 366
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.62 E-value=0.067 Score=53.00 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
...|.|.|++|+||||+|+.+....
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3578999999999999999999876
No 367
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.61 E-value=0.069 Score=52.56 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
..+|+|.|+.|+||||+|+.+....
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999876
No 368
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.59 E-value=0.25 Score=52.01 Aligned_cols=53 Identities=13% Similarity=0.127 Sum_probs=37.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHh
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKI 235 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l 235 (904)
.-.++.|.|.+|+||||+|..++.... . .=..++|++. ..+..++...++...
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a-~--~g~~Vl~fSl--Ems~~ql~~Rlls~~ 97 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSAL-N--DDRGVAVFSL--EMSAEQLALRALSDL 97 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHH-H--TTCEEEEEES--SSCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH-H--cCCeEEEEeC--CCCHHHHHHHHHHHh
Confidence 346888999999999999999988862 2 2235667654 445677777776543
No 369
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.59 E-value=0.075 Score=53.68 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
...+|+|.|+.|+|||||++.+....
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998764
No 370
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.58 E-value=0.065 Score=52.86 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 037222 181 IIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.|+|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998775
No 371
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.57 E-value=0.064 Score=54.41 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
...+|+|+|+.|+||||+++.+....
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 34689999999999999999999775
No 372
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.56 E-value=0.067 Score=51.80 Aligned_cols=23 Identities=26% Similarity=0.497 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 037222 181 IIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.|+|.|+.|+||||+++.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999876
No 373
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.55 E-value=0.055 Score=53.56 Aligned_cols=26 Identities=35% Similarity=0.569 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.-.+++|+|+.|+|||||++.+....
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999998864
No 374
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.54 E-value=0.038 Score=54.41 Aligned_cols=24 Identities=33% Similarity=0.667 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.+|+|.|+.|+||||+|+.+....
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 368999999999999999998876
No 375
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.50 E-value=0.068 Score=52.12 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
...|+|.|+.|+||||+++.+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999998865
No 376
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=92.32 E-value=0.3 Score=51.71 Aligned_cols=53 Identities=17% Similarity=0.123 Sum_probs=36.1
Q ss_pred HHHHHHHhc-CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCC
Q 037222 168 EQVWRCLVE-ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKD 221 (904)
Q Consensus 168 ~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~ 221 (904)
-++++.+.. ..-..++|+|.+|+|||+|++++.+........+. ++++-+.+.
T Consensus 163 iraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~-~V~~lIGER 216 (427)
T 3l0o_A 163 TRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTI-RIILLIDER 216 (427)
T ss_dssp HHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSE-EEEEECSCC
T ss_pred chhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeE-EEEEEeccC
Confidence 356666655 44568899999999999999999887521112333 356766664
No 377
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.30 E-value=0.068 Score=53.02 Aligned_cols=25 Identities=24% Similarity=0.211 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
...|.|.|++|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999999886
No 378
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.28 E-value=0.075 Score=52.51 Aligned_cols=26 Identities=15% Similarity=0.199 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.-.+++|+|+.|+|||||++.+....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 34689999999999999999998875
No 379
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.25 E-value=0.081 Score=50.39 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
-.+|+|.|+.|+||||+++.+....
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999998875
No 380
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=92.24 E-value=0.29 Score=54.17 Aligned_cols=57 Identities=16% Similarity=0.251 Sum_probs=42.3
Q ss_pred HHHHHhc-CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCC-HHHHHHHH
Q 037222 170 VWRCLVE-ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLR-LEKIQDDI 231 (904)
Q Consensus 170 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~-~~~~~~~i 231 (904)
+++.+.. ..-..++|.|..|+|||+|++++.+.. +-+..+++-+.+..+ +.++.+++
T Consensus 217 vID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~-----~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 217 VIDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKWS-----DAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHSCEETTCEEEECSCCSHHHHHHHHHHHHHS-----SCSEEEEEECCSSSSHHHHHHHHT
T ss_pred hhhccCCcccCCeEEeecCCCCCHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHHH
Confidence 4555554 345688999999999999999998764 335788898888764 55666654
No 381
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.14 E-value=0.08 Score=51.67 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 037222 181 IIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
+|.|.|++|+||||.|+.++..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999987
No 382
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.13 E-value=0.083 Score=51.92 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 177 ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
....+|.|.|+.|+||||+++.+....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 345789999999999999999998876
No 383
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=92.12 E-value=0.11 Score=56.50 Aligned_cols=101 Identities=12% Similarity=0.171 Sum_probs=58.3
Q ss_pred HHHHHhc-CCceEEEEEcCCCCcHHHHHHHHHHhcccCC-CCCC-EEEEEEecCCC-CHHHHHHHHHHHhCCCC-----C
Q 037222 170 VWRCLVE-ESVGIIGLYGMGGVGKTTLLTHINNKFLESP-TNFD-CVIWVVVSKDL-RLEKIQDDIGKKIGLSD-----D 240 (904)
Q Consensus 170 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~~f~-~~~wv~vs~~~-~~~~~~~~i~~~l~~~~-----~ 240 (904)
.++.+.. ..-..++|.|..|+|||+|+.++.+.. ... ++-+ ..+++-+.+.. .+.++.+++.+.-.+.. .
T Consensus 141 aID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~-~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~a 219 (465)
T 3vr4_D 141 AIDHLNTLVRGQKLPVFSGSGLPHKELAAQIARQA-TVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMN 219 (465)
T ss_dssp HHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHC-BCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEE
T ss_pred EEecccccccCCEEEEeCCCCcChHHHHHHHHHHH-HhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEE
Confidence 3444443 233457899999999999999999876 221 1122 66777777654 45566666554311110 0
Q ss_pred CCCCCCHHHH-----HHHHHHHHc---CCcEEEEecccc
Q 037222 241 SWKNKSFEEK-----AVDILRSLG---EKRFVLLLDDLW 271 (904)
Q Consensus 241 ~~~~~~~~~~-----~~~l~~~l~---~~r~LlVlDdv~ 271 (904)
..+....... .-.+.++++ ++..|+++||+-
T Consensus 220 tsd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 220 LANDPAIERIATPRMALTAAEYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp ETTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 1111111111 223455553 789999999994
No 384
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.11 E-value=0.069 Score=51.34 Aligned_cols=24 Identities=38% Similarity=0.454 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.+++|+|+.|+|||||++.++...
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 368999999999999999998876
No 385
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.08 E-value=0.085 Score=54.98 Aligned_cols=26 Identities=27% Similarity=0.525 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
...+++|+|++|+||||+++.++...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45799999999999999999999877
No 386
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.06 E-value=0.057 Score=50.93 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
..+++|+|..|+|||||++.+....
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998876
No 387
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.94 E-value=0.096 Score=51.72 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=20.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINN 201 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~ 201 (904)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999976
No 388
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.89 E-value=0.1 Score=49.33 Aligned_cols=26 Identities=27% Similarity=0.471 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
..++++|+|..|+|||||+..+....
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 35789999999999999999998875
No 389
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=91.88 E-value=0.1 Score=60.45 Aligned_cols=44 Identities=20% Similarity=0.280 Sum_probs=37.5
Q ss_pred ccccchHHHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 158 RTVVGLQSQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
..++|.+..++.+...+..+ ..+.|+|++|+||||||+.++...
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred ceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccC
Confidence 45799988888887777654 578999999999999999999876
No 390
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.86 E-value=0.074 Score=53.65 Aligned_cols=25 Identities=32% Similarity=0.308 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
-.+|+|+|+.|+||||+++.+....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4589999999999999999999876
No 391
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.78 E-value=0.09 Score=51.94 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
..|.|.|++|+||||+|+.+....
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999876
No 392
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=91.78 E-value=0.18 Score=54.04 Aligned_cols=37 Identities=24% Similarity=0.430 Sum_probs=29.1
Q ss_pred HHHHHHHHh--cCCceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 167 LEQVWRCLV--EESVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 167 ~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
..++.+.+. ..+..+|+|+|.+|+|||||+..+....
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 445555554 2467899999999999999999998775
No 393
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.71 E-value=0.093 Score=51.67 Aligned_cols=23 Identities=35% Similarity=0.313 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 037222 181 IIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.|.|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999876
No 394
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=91.70 E-value=0.095 Score=52.06 Aligned_cols=25 Identities=16% Similarity=0.360 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
..+|+|.|++|+||||+|+.+....
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999876
No 395
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.68 E-value=0.1 Score=53.88 Aligned_cols=24 Identities=29% Similarity=0.685 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHH
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINN 201 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~ 201 (904)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999983
No 396
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.67 E-value=0.094 Score=52.04 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 037222 181 IIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.|.|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999876
No 397
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=91.67 E-value=0.1 Score=54.89 Aligned_cols=24 Identities=33% Similarity=0.422 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.+|+|.|+.|+||||||+.++...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 589999999999999999999876
No 398
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.64 E-value=0.096 Score=51.16 Aligned_cols=24 Identities=21% Similarity=0.481 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
++|+|.|+.|+||||+|+.+....
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 389999999999999999999876
No 399
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.63 E-value=0.089 Score=53.14 Aligned_cols=24 Identities=29% Similarity=0.263 Sum_probs=21.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHH
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINN 201 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~ 201 (904)
.-.+++|+|+.|+|||||++.++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 447899999999999999999883
No 400
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.61 E-value=0.099 Score=52.44 Aligned_cols=26 Identities=27% Similarity=0.324 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 177 ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.. .+++|+|+.|+|||||++.++.-.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 46 899999999999999999998765
No 401
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=91.44 E-value=0.11 Score=53.96 Aligned_cols=26 Identities=31% Similarity=0.521 Sum_probs=23.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
...+++|+|+.|+||||+++.++...
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34699999999999999999998876
No 402
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=91.39 E-value=0.77 Score=50.29 Aligned_cols=97 Identities=13% Similarity=0.147 Sum_probs=56.7
Q ss_pred HHHHHhc-CCceEEEEEcCCCCcHHHHH-HHHHHhcccCCCCCC-EEEEEEecCCC-CHHHHHHHHHHHhCCCC-----C
Q 037222 170 VWRCLVE-ESVGIIGLYGMGGVGKTTLL-THINNKFLESPTNFD-CVIWVVVSKDL-RLEKIQDDIGKKIGLSD-----D 240 (904)
Q Consensus 170 l~~~L~~-~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~~f~-~~~wv~vs~~~-~~~~~~~~i~~~l~~~~-----~ 240 (904)
.++.+.. ..-..++|.|..|+|||+|| ..+.+.. +-+ .++++-+.+.. .+.++.+++.+.-.+.. .
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~l~l~~I~n~~-----~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~a 226 (513)
T 3oaa_A 152 AVDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQR-----DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVA 226 (513)
T ss_dssp HHHHHSCCBTTCBCEEEESSSSSHHHHHHHHHHTTS-----SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEE
T ss_pred eeccccccccCCEEEeecCCCCCcchHHHHHHHhhc-----cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEE
Confidence 3455543 34467889999999999996 4565542 234 46788888875 35666666555322211 0
Q ss_pred CCCCCCHHHH-----HHHHHHHH--cCCcEEEEecccc
Q 037222 241 SWKNKSFEEK-----AVDILRSL--GEKRFVLLLDDLW 271 (904)
Q Consensus 241 ~~~~~~~~~~-----~~~l~~~l--~~~r~LlVlDdv~ 271 (904)
..+.....+. .-.+.+++ +++..|+++||+-
T Consensus 227 tad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dslt 264 (513)
T 3oaa_A 227 TASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDLS 264 (513)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEETHH
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHhcCCCEEEEecChH
Confidence 1111111111 11233444 6899999999994
No 403
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.34 E-value=0.12 Score=54.15 Aligned_cols=26 Identities=27% Similarity=0.250 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
...+|+|.|+.|+|||||++.+....
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998875
No 404
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.30 E-value=0.071 Score=53.28 Aligned_cols=25 Identities=28% Similarity=0.259 Sum_probs=16.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHH-Hhc
Q 037222 179 VGIIGLYGMGGVGKTTLLTHIN-NKF 203 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~-~~~ 203 (904)
-.+++|+|+.|+|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4689999999999999999998 654
No 405
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.30 E-value=0.12 Score=51.78 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
...|.|.|+.|+||||+|+.+....
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999999886
No 406
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.14 E-value=0.094 Score=52.02 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999998764
No 407
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.14 E-value=0.11 Score=52.08 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45689999999999999999998765
No 408
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.13 E-value=0.12 Score=53.87 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
..+|.|+|+.|+||||||+.++...
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3589999999999999999999876
No 409
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.01 E-value=0.14 Score=52.33 Aligned_cols=26 Identities=31% Similarity=0.528 Sum_probs=22.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 34689999999999999999998754
No 410
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=90.94 E-value=0.091 Score=51.37 Aligned_cols=24 Identities=29% Similarity=0.185 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHh
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNK 202 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~ 202 (904)
-.+++|+|+.|+|||||++.++.-
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999865
No 411
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=90.94 E-value=0.13 Score=53.82 Aligned_cols=41 Identities=22% Similarity=0.400 Sum_probs=30.0
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecC
Q 037222 177 ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSK 220 (904)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~ 220 (904)
...++|+|+|-||+||||+|..++....+ . .. .++-|....
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~-~-G~-~VlliD~D~ 79 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSI-L-GK-RVLQIGCDP 79 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHH-T-TC-CEEEEEESS
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHH-C-CC-eEEEEeCCC
Confidence 46789999999999999999999888732 2 22 456666554
No 412
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=90.89 E-value=0.35 Score=53.76 Aligned_cols=57 Identities=19% Similarity=0.264 Sum_probs=41.2
Q ss_pred HHHHHhc-CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCC-CHHHHHHHH
Q 037222 170 VWRCLVE-ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDL-RLEKIQDDI 231 (904)
Q Consensus 170 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~-~~~~~~~~i 231 (904)
+++.|.. .+-..++|.|..|+|||+|+.++.+.. +-+.++++-+.+.. .+.++++++
T Consensus 222 vID~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~~~-----~~~v~V~~~iGER~~Ev~e~~~~~ 280 (600)
T 3vr4_A 222 VIDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKWS-----DVDLVVYVGCGERGNEMTDVVNEF 280 (600)
T ss_dssp HHHHHSCCBTTCEEEEECCTTSCHHHHHHHHHHHS-----SCSEEEEEEEEECHHHHHHHHHHT
T ss_pred hhhccCCccCCCEEeeecCCCccHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHHH
Confidence 4556654 355788999999999999999998864 23678888888763 344454443
No 413
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=90.87 E-value=0.15 Score=52.70 Aligned_cols=25 Identities=20% Similarity=0.372 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.++|.|.|+.|+||||||..++...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3689999999999999999998865
No 414
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=90.82 E-value=0.13 Score=49.48 Aligned_cols=25 Identities=32% Similarity=0.430 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.-.|+|+|..|+|||||++.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4578999999999999999998765
No 415
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=90.77 E-value=0.14 Score=53.60 Aligned_cols=26 Identities=27% Similarity=0.478 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
..++|.|+|+.|+||||||..++...
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 34689999999999999999999875
No 416
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=90.77 E-value=0.2 Score=48.08 Aligned_cols=86 Identities=17% Similarity=0.100 Sum_probs=45.9
Q ss_pred hcCCCcccEEEeecCCCccc----ccCccccccccCcEeecccCccc-----ccchhhhcCCCCcEeeccccccccccch
Q 037222 560 FQFMPSLKVLKISNCGNFTF----QLPLGMSKLGSLELFDISRTEIQ-----ELPEELKLLVNLKCLNLRWTSKLIRIPR 630 (904)
Q Consensus 560 ~~~l~~Lr~L~l~~~~~i~~----~lp~~i~~L~~L~~L~l~~~~i~-----~Lp~~~~~L~~L~~L~l~~~~~l~~lp~ 630 (904)
+.+-+.|+.|+|+++..|.. .+-+.+..-.+|+.|+|++|.|. .|...+..-+.|++|+|++| .+..--.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~Ga 115 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLTPELL 115 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC-cCCHHHH
Confidence 45566788888876324431 12333444566777777777664 23344444566777777666 4442111
Q ss_pred ----hhhcCCCCCceeeecc
Q 037222 631 ----QLISNSSGLRVLRMFA 646 (904)
Q Consensus 631 ----~~i~~L~~L~~L~l~~ 646 (904)
..+..-+.|++|++.+
T Consensus 116 ~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCC
T ss_pred HHHHHHHhhCCceeEEECCC
Confidence 0133334566666654
No 417
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=90.65 E-value=0.11 Score=51.97 Aligned_cols=26 Identities=23% Similarity=0.478 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999998765
No 418
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.61 E-value=0.25 Score=49.17 Aligned_cols=26 Identities=27% Similarity=0.491 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.-..|+|.|+.|+||||+++.+.+..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999999987
No 419
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=90.60 E-value=0.54 Score=60.70 Aligned_cols=86 Identities=17% Similarity=0.148 Sum_probs=58.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCC---CCCCHHHHHHHH
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDDSW---KNKSFEEKAVDI 254 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 254 (904)
.-.++.|.|.+|+||||||.+++... .. .-..++|++.-..++... ++.++...+.. +..+.++....+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~-a~--~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~ 453 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAA-QR--EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 453 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHH-HT--TTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH-Hh--cCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHH
Confidence 45789999999999999999998887 22 223688988877776542 55666543211 234556666665
Q ss_pred HHHH-cCCcEEEEecccc
Q 037222 255 LRSL-GEKRFVLLLDDLW 271 (904)
Q Consensus 255 ~~~l-~~~r~LlVlDdv~ 271 (904)
.... +.+.-+||+|-+.
T Consensus 454 ~~lv~~~~~~lIVIDSL~ 471 (2050)
T 3cmu_A 454 DALARSGAVDVIVVDSVA 471 (2050)
T ss_dssp HHHHHHTCCSEEEESCGG
T ss_pred HHHHHhcCCcEEEECCHH
Confidence 5544 3456799999985
No 420
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=90.54 E-value=0.11 Score=52.80 Aligned_cols=26 Identities=35% Similarity=0.459 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998765
No 421
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.52 E-value=0.14 Score=51.83 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHh
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNK 202 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~ 202 (904)
.-.+++|+|+.|+|||||++.++.-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999984
No 422
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=90.52 E-value=0.27 Score=51.11 Aligned_cols=53 Identities=15% Similarity=0.152 Sum_probs=34.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHH
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKK 234 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 234 (904)
.-.+++|.|.+|+|||||++.++... .... -..++|+... .+..++...+...
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~-~~~~-G~~v~~~~~e--~~~~~~~~r~~~~ 86 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQW-GTAM-GKKVGLAMLE--ESVEETAEDLIGL 86 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHH-HHTS-CCCEEEEESS--SCHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH-HHHc-CCeEEEEeCc--CCHHHHHHHHHHH
Confidence 44689999999999999999998876 2221 1145566543 2344444444433
No 423
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=90.49 E-value=0.16 Score=54.12 Aligned_cols=26 Identities=31% Similarity=0.521 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
...+++|+|..|+||||+++.++...
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 34699999999999999999999876
No 424
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=90.45 E-value=0.16 Score=51.70 Aligned_cols=26 Identities=31% Similarity=0.409 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
...++.+.|.||+||||++..+....
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 45788999999999999999999776
No 425
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.39 E-value=0.12 Score=51.83 Aligned_cols=26 Identities=38% Similarity=0.489 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998765
No 426
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=90.38 E-value=0.15 Score=53.26 Aligned_cols=23 Identities=35% Similarity=0.341 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHh
Q 037222 180 GIIGLYGMGGVGKTTLLTHINNK 202 (904)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~ 202 (904)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999875
No 427
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.32 E-value=0.14 Score=52.23 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHh
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNK 202 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~ 202 (904)
.-.+++|+|+.|+|||||++.++.-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999885
No 428
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=90.32 E-value=0.17 Score=46.75 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
..|.|+|.+|+|||||+..+.+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998764
No 429
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=90.31 E-value=0.12 Score=52.64 Aligned_cols=26 Identities=31% Similarity=0.525 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45689999999999999999998765
No 430
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=90.29 E-value=0.11 Score=51.12 Aligned_cols=26 Identities=35% Similarity=0.588 Sum_probs=22.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999998765
No 431
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=90.28 E-value=0.62 Score=51.17 Aligned_cols=97 Identities=16% Similarity=0.135 Sum_probs=57.9
Q ss_pred HHHHHhc-CCceEEEEEcCCCCcHHHHHH-HHHHhcccCCCCCCE-EEEEEecCCC-CHHHHHHHHHHHhCCCCC-----
Q 037222 170 VWRCLVE-ESVGIIGLYGMGGVGKTTLLT-HINNKFLESPTNFDC-VIWVVVSKDL-RLEKIQDDIGKKIGLSDD----- 240 (904)
Q Consensus 170 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~-~v~~~~~~~~~~f~~-~~wv~vs~~~-~~~~~~~~i~~~l~~~~~----- 240 (904)
.++.+.. ..-..++|+|..|+|||+||. .+.+.. .-+. .+++-+.+.. .+.++.+++.+.-.+...
T Consensus 152 aID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~a 226 (502)
T 2qe7_A 152 AIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQK-----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTA 226 (502)
T ss_dssp HHHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGG-----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEE
T ss_pred ecccccccccCCEEEEECCCCCCchHHHHHHHHHhh-----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEE
Confidence 4555543 344678999999999999964 666654 3453 5788888765 355666666653222110
Q ss_pred CCCCCCHHHH-----HHHHHHHH--cCCcEEEEecccc
Q 037222 241 SWKNKSFEEK-----AVDILRSL--GEKRFVLLLDDLW 271 (904)
Q Consensus 241 ~~~~~~~~~~-----~~~l~~~l--~~~r~LlVlDdv~ 271 (904)
..+.....+. .-.+.+++ +++..|+++||+-
T Consensus 227 tad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dslt 264 (502)
T 2qe7_A 227 SASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLS 264 (502)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 1111112221 12344444 5789999999994
No 432
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.28 E-value=0.12 Score=52.37 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998765
No 433
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=90.26 E-value=0.13 Score=51.29 Aligned_cols=26 Identities=31% Similarity=0.479 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998765
No 434
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.25 E-value=0.13 Score=52.43 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 45689999999999999999998765
No 435
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=90.22 E-value=0.16 Score=51.59 Aligned_cols=27 Identities=26% Similarity=0.448 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 177 ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
..-.+++|+|+.|+|||||++.+....
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 455799999999999999999998765
No 436
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=90.20 E-value=0.15 Score=52.82 Aligned_cols=27 Identities=15% Similarity=0.226 Sum_probs=23.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 177 ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
..-.+++|+|+.|+|||||++.+..-.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 355789999999999999999998764
No 437
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.17 E-value=0.19 Score=51.39 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=23.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998765
No 438
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.16 E-value=0.14 Score=51.60 Aligned_cols=26 Identities=27% Similarity=0.498 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998764
No 439
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=90.15 E-value=0.16 Score=49.13 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
-.|+|+|..|+|||||++.+....
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999998864
No 440
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=90.12 E-value=0.21 Score=54.29 Aligned_cols=101 Identities=11% Similarity=0.166 Sum_probs=58.8
Q ss_pred HHHHHhc-CCceEEEEEcCCCCcHHHHHHHHHHhcccCC--------CCCC-EEEEEEecCCC-CHHHHHHHHHHHhCCC
Q 037222 170 VWRCLVE-ESVGIIGLYGMGGVGKTTLLTHINNKFLESP--------TNFD-CVIWVVVSKDL-RLEKIQDDIGKKIGLS 238 (904)
Q Consensus 170 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------~~f~-~~~wv~vs~~~-~~~~~~~~i~~~l~~~ 238 (904)
.++.+.. ..-..++|.|..|+|||+|+.++++.. ... ++-+ ..+++-+.+.. .+.++.+++.+.-.+.
T Consensus 137 aID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~-~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~ 215 (464)
T 3gqb_B 137 TIDVMNTLVRGQKLPIFSGSGLPANEIAAQIARQA-TVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALS 215 (464)
T ss_dssp HHHTTSCCBTTCBCCEEEETTSCHHHHHHHHHHHC-BCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGG
T ss_pred eeecccccccCCEEEEecCCCCCchHHHHHHHHHH-HhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhccccc
Confidence 3444443 234567899999999999999998876 321 1223 56777777654 3556666654421110
Q ss_pred -----CCCCCCCCHHHH-----HHHHHHHHc---CCcEEEEecccc
Q 037222 239 -----DDSWKNKSFEEK-----AVDILRSLG---EKRFVLLLDDLW 271 (904)
Q Consensus 239 -----~~~~~~~~~~~~-----~~~l~~~l~---~~r~LlVlDdv~ 271 (904)
....+....... .-.+.++++ ++..|+++||+-
T Consensus 216 rtvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlT 261 (464)
T 3gqb_B 216 RSVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMT 261 (464)
T ss_dssp GEEEEEEETTSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHH
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 001122222222 223455553 789999999994
No 441
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.08 E-value=0.13 Score=51.76 Aligned_cols=26 Identities=35% Similarity=0.563 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999998765
No 442
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=90.07 E-value=0.18 Score=52.04 Aligned_cols=26 Identities=27% Similarity=0.241 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
..++|.|.|+.|+||||||..++...
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 35689999999999999999999875
No 443
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.06 E-value=0.13 Score=52.02 Aligned_cols=26 Identities=42% Similarity=0.535 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999998764
No 444
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=90.05 E-value=0.47 Score=60.46 Aligned_cols=87 Identities=17% Similarity=0.141 Sum_probs=58.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCC---CCCCHHHHHHHH
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDDSW---KNKSFEEKAVDI 254 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l 254 (904)
.-+++.|.|.+|+||||||.+++..... .-..++|++....++.. .++.++...+.. ...+.++....+
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~~---~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~i~~~~~~e~~l~~l 453 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEIC 453 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH---hCCCeEEEEccCchHHH-----HHHHcCCCHHHeEEcCCCCHHHHHHHH
Confidence 4578999999999999999999887621 22468899888777654 255665543211 233456665555
Q ss_pred HHHH-cCCcEEEEeccccc
Q 037222 255 LRSL-GEKRFVLLLDDLWE 272 (904)
Q Consensus 255 ~~~l-~~~r~LlVlDdv~~ 272 (904)
.... +.+.-+||+|-+..
T Consensus 454 ~~lv~~~~~~lVVIDSL~a 472 (1706)
T 3cmw_A 454 DALARSGAVDVIVVDSVAA 472 (1706)
T ss_dssp HHHHHHTCCSEEEESCSTT
T ss_pred HHHHHhcCCCEEEECCHHH
Confidence 5544 34566999999853
No 445
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=90.05 E-value=0.18 Score=52.87 Aligned_cols=26 Identities=38% Similarity=0.622 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
...+|+|+|.+|+||||++..++...
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998876
No 446
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=90.03 E-value=0.09 Score=54.47 Aligned_cols=26 Identities=27% Similarity=0.459 Sum_probs=20.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
+..+|+|.|..|+||||+|+.+....
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998864
No 447
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=89.98 E-value=0.16 Score=47.51 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHh
Q 037222 180 GIIGLYGMGGVGKTTLLTHINNK 202 (904)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~ 202 (904)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999865
No 448
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=89.97 E-value=0.27 Score=47.21 Aligned_cols=63 Identities=21% Similarity=0.172 Sum_probs=33.1
Q ss_pred ccccCcEeecccC-ccc-----ccchhhhcCCCCcEeeccccccccccch----hhhcCCCCCceeeecccCCc
Q 037222 587 KLGSLELFDISRT-EIQ-----ELPEELKLLVNLKCLNLRWTSKLIRIPR----QLISNSSGLRVLRMFATGYE 650 (904)
Q Consensus 587 ~L~~L~~L~l~~~-~i~-----~Lp~~~~~L~~L~~L~l~~~~~l~~lp~----~~i~~L~~L~~L~l~~~~~~ 650 (904)
+-..|+.|+|+++ .|. .+-..+..-+.|+.|+|++| .+..--. .++..-+.|++|++..|.+.
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 3456777777664 443 23344555566777777666 3332111 11334456666666666553
No 449
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=89.79 E-value=0.53 Score=51.75 Aligned_cols=97 Identities=14% Similarity=0.142 Sum_probs=57.2
Q ss_pred HHHHHhc-CCceEEEEEcCCCCcHHHHHH-HHHHhcccCCCCCCE-EEEEEecCCC-CHHHHHHHHHHHhCCCC-----C
Q 037222 170 VWRCLVE-ESVGIIGLYGMGGVGKTTLLT-HINNKFLESPTNFDC-VIWVVVSKDL-RLEKIQDDIGKKIGLSD-----D 240 (904)
Q Consensus 170 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~-~v~~~~~~~~~~f~~-~~wv~vs~~~-~~~~~~~~i~~~l~~~~-----~ 240 (904)
.++.+.. ..-..++|+|..|+|||+||. .+.+.. ..+. .+++-+.+.. .+.++.+++.+.-.+.. .
T Consensus 165 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~a 239 (515)
T 2r9v_A 165 AIDSMIPIGRGQRELIIGDRQTGKTAIAIDTIINQK-----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVA 239 (515)
T ss_dssp HHHHHSCEETTCBEEEEEETTSSHHHHHHHHHHTTT-----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEE
T ss_pred ccccccccccCCEEEEEcCCCCCccHHHHHHHHHhh-----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEE
Confidence 4555543 344678999999999999964 666653 3564 5788888765 35566666654321110 0
Q ss_pred CCCCCCHHHH-----HHHHHHHH--cCCcEEEEecccc
Q 037222 241 SWKNKSFEEK-----AVDILRSL--GEKRFVLLLDDLW 271 (904)
Q Consensus 241 ~~~~~~~~~~-----~~~l~~~l--~~~r~LlVlDdv~ 271 (904)
..+.....+. .-.+.+++ +++..|+++||+-
T Consensus 240 tad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~DslT 277 (515)
T 2r9v_A 240 SASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDLS 277 (515)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccHH
Confidence 1111111111 12344444 5789999999994
No 450
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=89.78 E-value=0.15 Score=51.50 Aligned_cols=26 Identities=35% Similarity=0.496 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34689999999999999999998775
No 451
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=89.77 E-value=0.15 Score=51.94 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 44689999999999999999998765
No 452
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=89.73 E-value=0.18 Score=51.59 Aligned_cols=23 Identities=30% Similarity=0.445 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 037222 181 IIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.++|+|..|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999875
No 453
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=89.68 E-value=0.18 Score=46.76 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 037222 181 IIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.|.|+|.+|+|||||+..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998764
No 454
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=89.63 E-value=0.15 Score=51.56 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999998765
No 455
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=89.62 E-value=0.15 Score=52.03 Aligned_cols=26 Identities=27% Similarity=0.304 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 44689999999999999999998764
No 456
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=89.61 E-value=0.43 Score=50.35 Aligned_cols=47 Identities=26% Similarity=0.245 Sum_probs=32.9
Q ss_pred HhcCCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCC
Q 037222 174 LVEESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLR 223 (904)
Q Consensus 174 L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~ 223 (904)
+.....+++.+.|-||+||||+|..++.... ..-..++-|+.....+
T Consensus 11 l~~~~~~i~~~sgkGGvGKTt~a~~lA~~la---~~g~~vllid~D~~~~ 57 (334)
T 3iqw_A 11 LDQRSLRWIFVGGKGGVGKTTTSCSLAIQLA---KVRRSVLLLSTDPAHN 57 (334)
T ss_dssp HHCTTCCEEEEECSTTSSHHHHHHHHHHHHT---TSSSCEEEEECCSSCH
T ss_pred hcCCCeEEEEEeCCCCccHHHHHHHHHHHHH---hCCCcEEEEECCCCCC
Confidence 3344578888999999999999999998872 2223456666554433
No 457
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=89.61 E-value=0.17 Score=55.48 Aligned_cols=27 Identities=19% Similarity=0.262 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 177 ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
....+|.|+|++|+||||+|+.+....
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 356799999999999999999998765
No 458
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=89.57 E-value=0.26 Score=53.53 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHh
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNK 202 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~ 202 (904)
...+++|+|..|+|||||.+.+...
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Confidence 5679999999999999999999884
No 459
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=89.56 E-value=0.22 Score=50.06 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
...|+|.|..|+||||+++.+....
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999999886
No 460
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=89.55 E-value=1.1 Score=49.39 Aligned_cols=53 Identities=9% Similarity=-0.060 Sum_probs=37.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHH
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKK 234 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 234 (904)
.-.++.|.|.+|+||||+|.+++... ... .-..++|++.- .+..++...++..
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~-a~~-~g~~vl~~slE--~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNA-ALK-EGVGVGIYSLE--MPAAQLTLRMMCS 251 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHH-HHT-TCCCEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH-HHh-CCCeEEEEECC--CCHHHHHHHHHHH
Confidence 34688999999999999999998876 211 12356776654 4566777766543
No 461
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=89.53 E-value=0.15 Score=52.31 Aligned_cols=26 Identities=42% Similarity=0.491 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 44689999999999999999998765
No 462
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=89.49 E-value=0.22 Score=49.88 Aligned_cols=26 Identities=27% Similarity=0.342 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
...+|+|.|+.|+||||+++.+....
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999999865
No 463
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=89.35 E-value=0.18 Score=51.90 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=22.8
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.-.++.|+|.+|+|||||+..++...
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34789999999999999999998765
No 464
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=89.35 E-value=0.37 Score=46.17 Aligned_cols=26 Identities=31% Similarity=0.255 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
....|+|+|.+|+|||||+..+....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44578999999999999999998764
No 465
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=89.34 E-value=0.38 Score=51.08 Aligned_cols=45 Identities=22% Similarity=0.282 Sum_probs=31.1
Q ss_pred cCCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCC
Q 037222 176 EESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKD 221 (904)
Q Consensus 176 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~ 221 (904)
....+++.+.|.||+||||+|..++... .....=..++-|+....
T Consensus 15 ~~~~~i~~~~gkGGvGKTt~a~~lA~~l-a~~~~g~~vllid~D~~ 59 (348)
T 3io3_A 15 HDSLKWIFVGGKGGVGKTTTSSSVAVQL-ALAQPNEQFLLISTDPA 59 (348)
T ss_dssp CTTCSEEEEECSTTSSHHHHHHHHHHHH-HHHCTTSCEEEEECCSS
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHH-HHhcCCCeEEEEECCCC
Confidence 4567899999999999999999998876 20011224555655543
No 466
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=89.32 E-value=0.14 Score=48.79 Aligned_cols=22 Identities=36% Similarity=0.505 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 037222 181 IIGLYGMGGVGKTTLLTHINNK 202 (904)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~ 202 (904)
-|+|+|.+|+|||||+..+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998764
No 467
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=89.28 E-value=0.19 Score=46.69 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
-.|.|+|.+|+|||||+..+.+..
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC
Confidence 457899999999999999998764
No 468
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=89.28 E-value=0.35 Score=52.72 Aligned_cols=29 Identities=31% Similarity=0.370 Sum_probs=25.1
Q ss_pred hcCCceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 175 VEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 175 ~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
....-.+++|+|+.|+||||+++.+....
T Consensus 163 ~~~~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 163 IKRPHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp HTSSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHhcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 33556799999999999999999998876
No 469
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=89.27 E-value=0.19 Score=48.06 Aligned_cols=25 Identities=20% Similarity=0.109 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
-+.|.|.|+.|+||||||..+....
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3678899999999999999998764
No 470
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.25 E-value=0.35 Score=46.07 Aligned_cols=34 Identities=26% Similarity=0.543 Sum_probs=26.2
Q ss_pred HHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHh
Q 037222 168 EQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNK 202 (904)
Q Consensus 168 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 202 (904)
.++.+ +.......|+|+|.+|+|||||+..+.+.
T Consensus 6 ~~~~~-~~~~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 6 TRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHHH-HHTTSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHHH-hcCCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34555 33455667899999999999999999854
No 471
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=89.18 E-value=0.31 Score=54.42 Aligned_cols=43 Identities=12% Similarity=-0.032 Sum_probs=32.2
Q ss_pred cchHHHHHHHHHHHh--cCCceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 161 VGLQSQLEQVWRCLV--EESVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 161 vGr~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
+.|.+-.+.+.+... .....+|.+.|+.|+||||+|+.+....
T Consensus 375 f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L 419 (511)
T 1g8f_A 375 FSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTF 419 (511)
T ss_dssp TSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred ccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHH
Confidence 455555555555442 2345789999999999999999999998
No 472
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=89.13 E-value=0.22 Score=53.35 Aligned_cols=27 Identities=22% Similarity=0.050 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 177 ESVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
....+++|+|+.|+|||||++.+....
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 355799999999999999999999765
No 473
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=89.08 E-value=0.14 Score=50.98 Aligned_cols=25 Identities=32% Similarity=0.306 Sum_probs=21.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHh
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNK 202 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~ 202 (904)
.-.+|+|.|+.|+||||+++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4568999999999999999998764
No 474
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=89.06 E-value=0.21 Score=47.62 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHh
Q 037222 180 GIIGLYGMGGVGKTTLLTHINNK 202 (904)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~ 202 (904)
..|+|+|.+|+|||||+..+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999874
No 475
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=88.96 E-value=0.12 Score=59.57 Aligned_cols=46 Identities=20% Similarity=0.153 Sum_probs=32.4
Q ss_pred ccccchHHHHHHHHHHHhcCCce-----------EEEEEcCCCCcHHHHHHHHHHhc
Q 037222 158 RTVVGLQSQLEQVWRCLVEESVG-----------IIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 158 ~~~vGr~~~~~~l~~~L~~~~~~-----------vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
+.++|.+..+..+.-.+..+..+ -|.++|++|+|||+||+.+++..
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 34678777665554444433211 47899999999999999988765
No 476
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=88.94 E-value=0.21 Score=47.76 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
-.|+|+|.+|+|||||+..+....
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 358899999999999999998764
No 477
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=88.93 E-value=0.64 Score=59.25 Aligned_cols=84 Identities=18% Similarity=0.158 Sum_probs=61.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHHhCCCCCCC---CCCCHHHHHHHHH
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKKIGLSDDSW---KNKSFEEKAVDIL 255 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~~~l~ 255 (904)
-++|-|+|+.|+||||||.++.... ++.=...+|+..-+..++.- ++.++...+.. .....++....+.
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~---~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~ 1502 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAA---QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1502 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHH---HHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH---HhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHH
Confidence 4789999999999999999988765 34446789998887777664 77777664422 2334466666666
Q ss_pred HHHc-CCcEEEEeccc
Q 037222 256 RSLG-EKRFVLLLDDL 270 (904)
Q Consensus 256 ~~l~-~~r~LlVlDdv 270 (904)
..++ +..-+||+|-|
T Consensus 1503 ~~~~s~~~~~vvvDsv 1518 (1706)
T 3cmw_A 1503 ALARSGAVDVIVVDSV 1518 (1706)
T ss_dssp HHHHHTCCSEEEESCS
T ss_pred HHHHcCCCCEEEEccH
Confidence 6664 56779999998
No 478
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=88.90 E-value=0.22 Score=49.18 Aligned_cols=24 Identities=38% Similarity=0.447 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
..++|.|++|+||||+|+.+....
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999876
No 479
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=88.90 E-value=0.34 Score=53.92 Aligned_cols=38 Identities=24% Similarity=0.370 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 165 SQLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 165 ~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
..+..+...+..+. +.+.|.|.+|+||||++..+....
T Consensus 32 ~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 32 NAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp HHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34444444555433 489999999999999999998877
No 480
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=88.89 E-value=1.1 Score=50.54 Aligned_cols=53 Identities=11% Similarity=0.078 Sum_probs=37.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCHHHHHHHHHHH
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRLEKIQDDIGKK 234 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~~~~~~~i~~~ 234 (904)
.-.++.|.|.+|+||||||.+++... .. .+=..++|++.-. +..++...++..
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~-a~-~~g~~vl~~s~E~--s~~~l~~r~~~~ 293 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQW-GT-AMGKKVGLAMLEE--SVEETAEDLIGL 293 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHH-TT-TSCCCEEEEESSS--CHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHH-HH-hcCCcEEEEeccC--CHHHHHHHHHHH
Confidence 34688999999999999999998887 22 1123577776544 466777766544
No 481
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=88.86 E-value=0.42 Score=47.52 Aligned_cols=35 Identities=20% Similarity=0.393 Sum_probs=27.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEE
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIW 215 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~w 215 (904)
...|.|.|+.|+||||+++.+.+.. . ...+..+..
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l-~-~~~~~~~~~ 61 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETL-Q-QNGIDHITR 61 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHH-H-HTTCCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-H-hcCCCeeee
Confidence 4689999999999999999999887 3 234553333
No 482
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=88.81 E-value=0.3 Score=47.84 Aligned_cols=24 Identities=25% Similarity=0.122 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
-.|.+.|.||+||||+|..++...
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHHH
Confidence 347889999999999999988876
No 483
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=88.80 E-value=0.25 Score=48.01 Aligned_cols=38 Identities=21% Similarity=0.156 Sum_probs=21.8
Q ss_pred HHHHHHHHHhcCCceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 166 QLEQVWRCLVEESVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 166 ~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
..+.+.+.......-.|+|+|.+|+|||||+..+.+..
T Consensus 17 ~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 17 RGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp -------------CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred chhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 33333333333445668899999999999999988764
No 484
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=88.70 E-value=0.23 Score=46.10 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.-|+|+|.+|+|||||+..+....
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 458899999999999999998764
No 485
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=88.66 E-value=0.19 Score=51.01 Aligned_cols=24 Identities=38% Similarity=0.423 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHh
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNK 202 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~ 202 (904)
-.+++|+|+.|+|||||++.++.-
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999998764
No 486
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=88.65 E-value=0.44 Score=48.05 Aligned_cols=36 Identities=19% Similarity=0.247 Sum_probs=27.9
Q ss_pred HHHHHHHhcC--CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 168 EQVWRCLVEE--SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 168 ~~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.-+..|+... ....|.++|++|+|||.+|..+++..
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 3455666543 24579999999999999999999864
No 487
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=88.59 E-value=0.35 Score=51.48 Aligned_cols=112 Identities=13% Similarity=0.113 Sum_probs=60.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecCCCCH--HHHHHHHHHHhCCCCCCCCCCCHHHHHHHH
Q 037222 177 ESVGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSKDLRL--EKIQDDIGKKIGLSDDSWKNKSFEEKAVDI 254 (904)
Q Consensus 177 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~~~l 254 (904)
....+++|+|+.|+|||||++.+.... .. .....+ +++.++... ... ..+..+.. ...........+
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~-~~--~~~~~i-~t~ed~~e~~~~~~-~~~v~q~~------~~~~~~~~~~~L 189 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYL-NN--TKYHHI-LTIEDPIEFVHESK-KCLVNQRE------VHRDTLGFSEAL 189 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHH-HH--HCCCEE-EEEESSCCSCCCCS-SSEEEEEE------BTTTBSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc-cC--CCCcEE-EEccCcHHhhhhcc-ccceeeee------eccccCCHHHHH
Confidence 445699999999999999999987765 11 111122 122221110 000 00000000 001112234477
Q ss_pred HHHHcCCcEEEEecccccccccccccCCCCCCCCCCcEEEEEecchhhh
Q 037222 255 LRSLGEKRFVLLLDDLWERVDLTKVGVPLPGPQNTTSKVVFATRFIDVC 303 (904)
Q Consensus 255 ~~~l~~~r~LlVlDdv~~~~~~~~~~~~l~~~~~~gs~IivTtR~~~v~ 303 (904)
...|...+=+|++|++.+...++.+.... ..|..|++||-..+.+
T Consensus 190 a~aL~~~PdvillDEp~d~e~~~~~~~~~----~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 190 RSALREDPDIILVGEMRDLETIRLALTAA----ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp HHHTTSCCSEEEESCCCSHHHHHHHHHHH----HTTCEEEEEESCSSHH
T ss_pred HHHhhhCcCEEecCCCCCHHHHHHHHHHH----hcCCEEEEEEccChHH
Confidence 78888888899999997655544433221 2355688888865543
No 488
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=88.55 E-value=0.43 Score=46.37 Aligned_cols=24 Identities=29% Similarity=0.564 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
+.|+|-|..|+||||+++.+++..
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHH
Confidence 578999999999999999999987
No 489
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=88.50 E-value=0.58 Score=51.49 Aligned_cols=89 Identities=13% Similarity=0.192 Sum_probs=51.1
Q ss_pred CceEEEEEcCCCCcHHHHHH-HHHHhcccCCCCCC-EEEEEEecCCC-CHHHHHHHHHHHhCCCC-----CCCCCCC---
Q 037222 178 SVGIIGLYGMGGVGKTTLLT-HINNKFLESPTNFD-CVIWVVVSKDL-RLEKIQDDIGKKIGLSD-----DSWKNKS--- 246 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~-~v~~~~~~~~~~f~-~~~wv~vs~~~-~~~~~~~~i~~~l~~~~-----~~~~~~~--- 246 (904)
.-..++|+|..|+|||+||. .+.+.. ..+ ..+++-+.+.. .+.++.+++.+.-.+.. ...+...
T Consensus 162 rGQR~~Ifg~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r 236 (507)
T 1fx0_A 162 RGQRELIIGDRQTGKTAVATDTILNQQ-----GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQ 236 (507)
T ss_dssp TTCBCBEEESSSSSHHHHHHHHHHTCC-----TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGT
T ss_pred cCCEEEEecCCCCCccHHHHHHHHHhh-----cCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHH
Confidence 34567899999999999964 666653 245 45788888764 34455555544211100 0001111
Q ss_pred --HHHHHHHHHHHH--cCCcEEEEecccc
Q 037222 247 --FEEKAVDILRSL--GEKRFVLLLDDLW 271 (904)
Q Consensus 247 --~~~~~~~l~~~l--~~~r~LlVlDdv~ 271 (904)
.....-.+.+++ +++..|+++||+-
T Consensus 237 ~~a~~~a~tiAEyfrd~G~dVLli~Dslt 265 (507)
T 1fx0_A 237 YLAPYTGAALAEYFMYRERHTLIIYDDLS 265 (507)
T ss_dssp THHHHHHHHHHHHHHHTTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 111222333333 6899999999984
No 490
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=88.49 E-value=0.36 Score=52.75 Aligned_cols=101 Identities=12% Similarity=0.131 Sum_probs=59.5
Q ss_pred HHHHHhc-CCceEEEEEcCCCCcHHHHHHHHHHhcccCCC-C-CCEEEEEEecCCC-CHHHHHHHHHHHhCCCC-----C
Q 037222 170 VWRCLVE-ESVGIIGLYGMGGVGKTTLLTHINNKFLESPT-N-FDCVIWVVVSKDL-RLEKIQDDIGKKIGLSD-----D 240 (904)
Q Consensus 170 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-~-f~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~-----~ 240 (904)
.++.+.. ..-..++|.|..|+|||+|+.+++... .... . =+..+++-+.+.. .+.++.+++.+.-.+.. .
T Consensus 142 ~ID~l~pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~-~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~ 220 (469)
T 2c61_A 142 TIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQA-SVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLN 220 (469)
T ss_dssp HHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHC-BCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEE
T ss_pred eeeeeeccccCCEEEEECCCCCCHHHHHHHHHHHH-hhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEE
Confidence 3455543 334567889999999999999999987 3211 1 1467788777764 45666666665321110 0
Q ss_pred CCCCCCHHH-----HHHHHHHHH---cCCcEEEEecccc
Q 037222 241 SWKNKSFEE-----KAVDILRSL---GEKRFVLLLDDLW 271 (904)
Q Consensus 241 ~~~~~~~~~-----~~~~l~~~l---~~~r~LlVlDdv~ 271 (904)
..+...... ..-.+.+++ +++..|+++||+-
T Consensus 221 tsd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dslt 259 (469)
T 2c61_A 221 LADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDIT 259 (469)
T ss_dssp ETTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCHH
Confidence 111111111 122344454 4799999999983
No 491
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=88.45 E-value=0.5 Score=46.22 Aligned_cols=24 Identities=29% Similarity=0.391 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
..|.|.|..|+||||+++.+.+..
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 578999999999999999999887
No 492
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=88.41 E-value=0.44 Score=48.64 Aligned_cols=38 Identities=21% Similarity=0.447 Sum_probs=28.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCEEEEEEecC
Q 037222 180 GIIGLYGMGGVGKTTLLTHINNKFLESPTNFDCVIWVVVSK 220 (904)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~vs~ 220 (904)
++|+|.|-||+||||+|..++... .. ... .++-|....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~l-a~-~G~-~VlliD~D~ 39 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGL-HA-MGK-TIMVVGCDP 39 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHH-HT-TTC-CEEEEEECT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHH-HH-CCC-cEEEEcCCC
Confidence 578889999999999999999887 22 222 456666543
No 493
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=88.40 E-value=0.61 Score=45.59 Aligned_cols=32 Identities=19% Similarity=0.262 Sum_probs=25.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhcccCCCCCCE
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKFLESPTNFDC 212 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~ 212 (904)
-..|.|.|+.|+||||+++.+.+.. . ...+..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l-~-~~~~~v 37 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERL-R-ERGIEV 37 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH-H-TTTCCE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHH-H-HcCCCc
Confidence 3578999999999999999999887 3 234554
No 494
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=88.39 E-value=0.24 Score=52.62 Aligned_cols=26 Identities=35% Similarity=0.385 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 178 SVGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 178 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 44689999999999999999999865
No 495
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=88.39 E-value=0.26 Score=52.88 Aligned_cols=24 Identities=38% Similarity=0.631 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.+|+|.|+.|+||||||..++...
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 589999999999999999999876
No 496
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=88.34 E-value=0.21 Score=46.81 Aligned_cols=24 Identities=38% Similarity=0.380 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
-.|+|+|.+|+|||||+..+....
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEECCCCccHHHHHHHHhcCC
Confidence 458999999999999999987654
No 497
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=88.33 E-value=0.25 Score=45.89 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 037222 181 IIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 181 vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
-|+|+|.+|+|||||+..+.+..
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998764
No 498
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=88.31 E-value=0.25 Score=47.06 Aligned_cols=25 Identities=28% Similarity=0.247 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 179 VGIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 179 ~~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
.-.|+|+|.+|+|||||+..+.+..
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3457899999999999999998764
No 499
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=88.31 E-value=0.78 Score=50.52 Aligned_cols=101 Identities=14% Similarity=0.120 Sum_probs=58.5
Q ss_pred HHHHHhc-CCceEEEEEcCCCCcHHHHH-HHHHHhcccC----CCCCC-EEEEEEecCCC-CHHHHHHHHHHHhCCCC--
Q 037222 170 VWRCLVE-ESVGIIGLYGMGGVGKTTLL-THINNKFLES----PTNFD-CVIWVVVSKDL-RLEKIQDDIGKKIGLSD-- 239 (904)
Q Consensus 170 l~~~L~~-~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~----~~~f~-~~~wv~vs~~~-~~~~~~~~i~~~l~~~~-- 239 (904)
.++.+.. ..-..++|+|..|+|||+|| ..+.+.. .. ..+-+ ..+++-+.+.. .+.++.+++.+.-.+..
T Consensus 152 aID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~-~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tv 230 (510)
T 2ck3_A 152 AVDSLVPIGRGQRELIIGDRQTGKTSIAIDTIINQK-RFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTI 230 (510)
T ss_dssp HHHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHHTH-HHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEE
T ss_pred eeccccccccCCEEEEecCCCCCchHHHHHHHHHHH-hhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccce
Confidence 4555544 34467899999999999995 5666655 21 12344 47888888765 35566666655321110
Q ss_pred ---CCCCCCCHHHH-----HHHHHHHH--cCCcEEEEecccc
Q 037222 240 ---DSWKNKSFEEK-----AVDILRSL--GEKRFVLLLDDLW 271 (904)
Q Consensus 240 ---~~~~~~~~~~~-----~~~l~~~l--~~~r~LlVlDdv~ 271 (904)
...+.....+. .-.+.+++ +++..|+++||+-
T Consensus 231 vV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dslt 272 (510)
T 2ck3_A 231 VVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLS 272 (510)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHH
Confidence 01111111111 12334444 5789999999994
No 500
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=88.30 E-value=0.25 Score=46.10 Aligned_cols=24 Identities=33% Similarity=0.333 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 037222 180 GIIGLYGMGGVGKTTLLTHINNKF 203 (904)
Q Consensus 180 ~vi~I~G~gGiGKTtLa~~v~~~~ 203 (904)
-.|+|+|.+|+|||||+..+....
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 458899999999999999998764
Done!