BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037223
(338 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FGT|A Chain A, Crystal Structure Of Yych From Bacillus Subtilis
Length = 417
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 26/58 (44%)
Query: 79 QYGRLHYGASFATQNAIALGKPFLEEQGIHIPSYAFTDSITSQQVSFSTYLDSFCFIN 136
Q L S+ T I + +LE+ G Y F + SQQ+SF ++D IN
Sbjct: 244 QQRNLVQSTSYQTGELIKKSQKYLEDTGSWTDHYQFFNINDSQQLSFYIFMDQIPVIN 301
>pdb|3SQV|A Chain A, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|B Chain B, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
Length = 616
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 19/110 (17%)
Query: 131 SFCFINRLEC--REKLQSSLFMVDLGSNDYKYALLNGKSVEQVEEYVPVISSNIVNMVSE 188
+FC+ N C R ++S F +++ K A G S Q Y P+++ E
Sbjct: 91 NFCYANLSNCIIRALFENSNF----SNSNLKNASFKGSSYIQ---YPPILN--------E 135
Query: 189 IKKEGASNILVPGMLPLGCIPGYVSLLHSANPADFDADNCHLGLNNLAKN 238
GA I++PGM+ G I G V L S + C++ L+++ +N
Sbjct: 136 ADLTGA--IIIPGMVLSGAILGDVKELFSEKSNTINLGGCYIDLSDIQEN 183
>pdb|3NAW|A Chain A, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NAW|B Chain B, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NB2|A Chain A, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NB2|B Chain B, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NB2|C Chain C, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NB2|D Chain D, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
Length = 613
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 19/110 (17%)
Query: 131 SFCFINRLEC--REKLQSSLFMVDLGSNDYKYALLNGKSVEQVEEYVPVISSNIVNMVSE 188
+FC+ N C R ++S F +++ K A G S Q Y P+++ E
Sbjct: 88 NFCYANLSNCIIRALFENSNF----SNSNLKNASFKGSSYIQ---YPPILN--------E 132
Query: 189 IKKEGASNILVPGMLPLGCIPGYVSLLHSANPADFDADNCHLGLNNLAKN 238
GA I++PGM+ G I G V L S + C++ L+++ +N
Sbjct: 133 ADLTGA--IIIPGMVLSGAILGDVKELFSEKSNTINLGGCYIDLSDIQEN 180
>pdb|1ZNB|A Chain A, Metallo-Beta-Lactamase
pdb|1ZNB|B Chain B, Metallo-Beta-Lactamase
pdb|2ZNB|A Chain A, Metallo-Beta-Lactamase (Cadmium-Bound Form)
pdb|2ZNB|B Chain B, Metallo-Beta-Lactamase (Cadmium-Bound Form)
pdb|3ZNB|A Chain A, Metallo-Beta-Lactamase (Zn, Hg-Bound Form)
pdb|3ZNB|B Chain B, Metallo-Beta-Lactamase (Zn, Hg-Bound Form)
Length = 232
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 13/80 (16%)
Query: 49 SPSGSHRGSLMTDQIATAFHLPS----PKDYTGEQYGRLHY-----GASFATQNAIALGK 99
+P + + + +A + H P + G+ G L Y S+A Q I L K
Sbjct: 53 TPINDAQTETLVNWVADSLHAKVTTFIPNHWHGDCIGGLGYLQKKGVQSYANQMTIDLAK 112
Query: 100 PFLEEQGIHIPSYAFTDSIT 119
E+G+ +P + FTDS+T
Sbjct: 113 ----EKGLPVPEHGFTDSLT 128
>pdb|1HLK|A Chain A, Metallo-Beta-Lactamase From Bacteroides Fragilis In
Complex With A Tricyclic Inhibitor
pdb|1HLK|B Chain B, Metallo-Beta-Lactamase From Bacteroides Fragilis In
Complex With A Tricyclic Inhibitor
Length = 227
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 9/68 (13%)
Query: 57 SLMTDQIATAFHLPSPKDYTGEQYGRLHY-----GASFATQNAIALGKPFLEEQGIHIPS 111
+ +TD + P + G+ G L Y S+A Q I L K E+G+ +P
Sbjct: 62 NWVTDSLHAKVTTFIPNHWHGDCIGGLGYLQRKGVQSYANQMTIDLAK----EKGLPVPE 117
Query: 112 YAFTDSIT 119
+ FTDS+T
Sbjct: 118 HGFTDSLT 125
>pdb|2BMI|A Chain A, Metallo-Beta-Lactamase
pdb|2BMI|B Chain B, Metallo-Beta-Lactamase
pdb|1KR3|A Chain A, Crystal Structure Of The Metallo Beta-Lactamase From
Bacteroides Fragilis (Cfia) In Complex With The
Tricyclic Inhibitor Sb-236050.
pdb|1KR3|B Chain B, Crystal Structure Of The Metallo Beta-Lactamase From
Bacteroides Fragilis (Cfia) In Complex With The
Tricyclic Inhibitor Sb-236050
Length = 232
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 9/68 (13%)
Query: 57 SLMTDQIATAFHLPSPKDYTGEQYGRLHY-----GASFATQNAIALGKPFLEEQGIHIPS 111
+ +TD + P + G+ G L Y S+A Q I L K E+G+ +P
Sbjct: 65 NWVTDSLHAKVTTFIPNHWHGDCIGGLGYLQRKGVQSYANQMTIDLAK----EKGLPVPE 120
Query: 112 YAFTDSIT 119
+ FTDS+T
Sbjct: 121 HGFTDSLT 128
>pdb|1A7T|A Chain A, Metallo-Beta-Lactamase With Mes
pdb|1A7T|B Chain B, Metallo-Beta-Lactamase With Mes
pdb|1A8T|A Chain A, Metallo-Beta-Lactamase In Complex With L-159,061
pdb|1A8T|B Chain B, Metallo-Beta-Lactamase In Complex With L-159,061
Length = 232
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 9/68 (13%)
Query: 57 SLMTDQIATAFHLPSPKDYTGEQYGRLHY-----GASFATQNAIALGKPFLEEQGIHIPS 111
+ +TD + P + G+ G L Y S+A Q I L K E+G+ +P
Sbjct: 65 NWVTDSLHAKVTTFIPNHWHGDCIGGLGYLQRKGVQSYANQMTIDLAK----EKGLPVPE 120
Query: 112 YAFTDSIT 119
+ FTDS+T
Sbjct: 121 HGFTDSLT 128
>pdb|4ZNB|A Chain A, Metallo-Beta-Lactamase (C181s Mutant)
pdb|4ZNB|B Chain B, Metallo-Beta-Lactamase (C181s Mutant)
Length = 232
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 13/80 (16%)
Query: 49 SPSGSHRGSLMTDQIATAFHLPS----PKDYTGEQYGRLHY-----GASFATQNAIALGK 99
+P + + + +A + H P + G+ G L Y S+A Q I L K
Sbjct: 53 TPINDAQTETLVNWVADSLHAKVTTFIPNHWHGDCIGGLGYLQKKGVQSYANQMTIDLAK 112
Query: 100 PFLEEQGIHIPSYAFTDSIT 119
E+G+ +P + FTDS+T
Sbjct: 113 ----EKGLPVPEHGFTDSLT 128
>pdb|2Q1L|A Chain A, Design And Synthesis Of Pyrrole-Based, Hepatoselective
Hmg-Coa Reductase Inhibitors
pdb|2Q1L|B Chain B, Design And Synthesis Of Pyrrole-Based, Hepatoselective
Hmg-Coa Reductase Inhibitors
pdb|2Q1L|C Chain C, Design And Synthesis Of Pyrrole-Based, Hepatoselective
Hmg-Coa Reductase Inhibitors
pdb|2Q1L|D Chain D, Design And Synthesis Of Pyrrole-Based, Hepatoselective
Hmg-Coa Reductase Inhibitors
pdb|2Q6B|A Chain A, Design And Synthesis Of Novel, Conformationally Restricted
Hmg-Coa Reductase Inhibitors
pdb|2Q6B|B Chain B, Design And Synthesis Of Novel, Conformationally Restricted
Hmg-Coa Reductase Inhibitors
pdb|2Q6B|C Chain C, Design And Synthesis Of Novel, Conformationally Restricted
Hmg-Coa Reductase Inhibitors
pdb|2Q6B|D Chain D, Design And Synthesis Of Novel, Conformationally Restricted
Hmg-Coa Reductase Inhibitors
pdb|2Q6C|A Chain A, Design And Synthesis Of Novel, Conformationally Restricted
Hmg-Coa Reductase Inhibitors
pdb|2Q6C|B Chain B, Design And Synthesis Of Novel, Conformationally Restricted
Hmg-Coa Reductase Inhibitors
pdb|2Q6C|C Chain C, Design And Synthesis Of Novel, Conformationally Restricted
Hmg-Coa Reductase Inhibitors
pdb|2Q6C|D Chain D, Design And Synthesis Of Novel, Conformationally Restricted
Hmg-Coa Reductase Inhibitors
pdb|3BGL|A Chain A, Hepatoselectivity Of Statins: Design And Synthesis Of 4-
Sulfamoyl Pyrroles As Hmg-Coa Reductase Inhibitors
pdb|3BGL|B Chain B, Hepatoselectivity Of Statins: Design And Synthesis Of 4-
Sulfamoyl Pyrroles As Hmg-Coa Reductase Inhibitors
pdb|3BGL|C Chain C, Hepatoselectivity Of Statins: Design And Synthesis Of 4-
Sulfamoyl Pyrroles As Hmg-Coa Reductase Inhibitors
pdb|3BGL|D Chain D, Hepatoselectivity Of Statins: Design And Synthesis Of 4-
Sulfamoyl Pyrroles As Hmg-Coa Reductase Inhibitors
pdb|2R4F|A Chain A, Substituted Pyrazoles As Hepatselective Hmg-Coa Reductase
Inhibitors
pdb|2R4F|B Chain B, Substituted Pyrazoles As Hepatselective Hmg-Coa Reductase
Inhibitors
pdb|2R4F|C Chain C, Substituted Pyrazoles As Hepatselective Hmg-Coa Reductase
Inhibitors
pdb|2R4F|D Chain D, Substituted Pyrazoles As Hepatselective Hmg-Coa Reductase
Inhibitors
pdb|3CCT|A Chain A, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CCT|B Chain B, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CCT|C Chain C, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CCT|D Chain D, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CCW|A Chain A, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CCW|B Chain B, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CCW|C Chain C, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CCW|D Chain D, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CCZ|A Chain A, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CCZ|B Chain B, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CCZ|C Chain C, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CCZ|D Chain D, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CD0|A Chain A, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CD0|B Chain B, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CD0|C Chain C, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CD0|D Chain D, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CD5|A Chain A, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CD5|B Chain B, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CD5|C Chain C, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CD5|D Chain D, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CD7|A Chain A, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CD7|B Chain B, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CD7|C Chain C, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CD7|D Chain D, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CDA|A Chain A, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CDA|B Chain B, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CDA|C Chain C, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CDA|D Chain D, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CDB|A Chain A, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CDB|B Chain B, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CDB|C Chain C, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
pdb|3CDB|D Chain D, Thermodynamic And Structure Guided Design Of Statin
Hmg-Coa Reductase Inhibitors
Length = 441
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 39/108 (36%), Gaps = 13/108 (12%)
Query: 70 PSPKDYTGEQYGRLHYGASFATQNAIALGKPFLEEQGIHIPSYAFTDSITSQQVSFSTYL 129
P P + + G GA F + I HIP+Y I + + S
Sbjct: 8 PRPNEECLQILGNAEKGAKFLSDAEI-----IQLVNAKHIPAYKLETLIETHERGVS--- 59
Query: 130 DSFCFINRLECREKLQSSLFMVDLGSNDYKYALLNGKSVEQVEEYVPV 177
I R +KL + L DY Y+L+ G E V Y+P+
Sbjct: 60 -----IRRQLLSKKLSEPSSLQYLPYRDYNYSLVMGACCENVIGYMPI 102
>pdb|1DQ8|A Chain A, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Hmg And Coa
pdb|1DQ8|B Chain B, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Hmg And Coa
pdb|1DQ8|C Chain C, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Hmg And Coa
pdb|1DQ8|D Chain D, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Hmg And Coa
pdb|1DQ9|A Chain A, Complex Of Catalytic Portion Of Human Hmg-Coa Reductase
With Hmg-Coa
pdb|1DQ9|B Chain B, Complex Of Catalytic Portion Of Human Hmg-Coa Reductase
With Hmg-Coa
pdb|1DQ9|C Chain C, Complex Of Catalytic Portion Of Human Hmg-Coa Reductase
With Hmg-Coa
pdb|1DQ9|D Chain D, Complex Of Catalytic Portion Of Human Hmg-Coa Reductase
With Hmg-Coa
pdb|1DQA|A Chain A, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Hmg, Coa, And Nadp+
pdb|1DQA|B Chain B, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Hmg, Coa, And Nadp+
pdb|1DQA|C Chain C, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Hmg, Coa, And Nadp+
pdb|1DQA|D Chain D, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Hmg, Coa, And Nadp+
pdb|1HW8|A Chain A, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Compactin (Also Known As Mevastatin)
pdb|1HW8|B Chain B, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Compactin (Also Known As Mevastatin)
pdb|1HW8|C Chain C, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Compactin (Also Known As Mevastatin)
pdb|1HW8|D Chain D, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Compactin (Also Known As Mevastatin)
pdb|1HW9|A Chain A, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Simvastatin
pdb|1HW9|B Chain B, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Simvastatin
pdb|1HW9|C Chain C, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Simvastatin
pdb|1HW9|D Chain D, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Simvastatin
pdb|1HWI|A Chain A, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Fluvastatin
pdb|1HWI|B Chain B, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Fluvastatin
pdb|1HWI|C Chain C, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Fluvastatin
pdb|1HWI|D Chain D, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Fluvastatin
pdb|1HWJ|A Chain A, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Cerivastatin
pdb|1HWJ|B Chain B, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Cerivastatin
pdb|1HWJ|C Chain C, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Cerivastatin
pdb|1HWJ|D Chain D, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Cerivastatin
pdb|1HWK|A Chain A, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Atorvastatin
pdb|1HWK|B Chain B, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Atorvastatin
pdb|1HWK|C Chain C, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Atorvastatin
pdb|1HWK|D Chain D, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Atorvastatin
pdb|1HWL|A Chain A, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Rosuvastatin (Formally Known As Zd4522)
pdb|1HWL|B Chain B, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Rosuvastatin (Formally Known As Zd4522)
pdb|1HWL|C Chain C, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Rosuvastatin (Formally Known As Zd4522)
pdb|1HWL|D Chain D, Complex Of The Catalytic Portion Of Human Hmg-Coa
Reductase With Rosuvastatin (Formally Known As Zd4522)
Length = 467
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 39/108 (36%), Gaps = 13/108 (12%)
Query: 70 PSPKDYTGEQYGRLHYGASFATQNAIALGKPFLEEQGIHIPSYAFTDSITSQQVSFSTYL 129
P P + + G GA F + I HIP+Y I + + S
Sbjct: 21 PRPNEECLQILGNAEKGAKFLSDAEI-----IQLVNAKHIPAYKLETLIETHERGVS--- 72
Query: 130 DSFCFINRLECREKLQSSLFMVDLGSNDYKYALLNGKSVEQVEEYVPV 177
I R +KL + L DY Y+L+ G E V Y+P+
Sbjct: 73 -----IRRQLLSKKLSEPSSLQYLPYRDYNYSLVMGACCENVIGYMPI 115
>pdb|3GZH|A Chain A, Crystal Structure Of Phosphate-Bound Adenylosuccinate
Lyase From E. Coli
Length = 482
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 3/90 (3%)
Query: 210 GYVSLLHSANPADFDADNCHLGLNNLAKNHNDQLKLAISEEWPHGPYAQSQAFSEIGDSV 269
G ++ H NP DF+ +LGL+N H KL +S W S +G +
Sbjct: 320 GSSTMPHKVNPIDFENSEGNLGLSNAVLQHLAS-KLPVS-RWQRD-LTDSTVLRNLGVGI 376
Query: 270 SYSQVLYADYYNAFMALLRDKSHHSRPLFH 299
Y+ + Y L ++ H L H
Sbjct: 377 GYALIAYQSTLKGVSKLEVNRDHLLDELDH 406
>pdb|2PTR|A Chain A, Crystal Structure Of Escherichia Coli Adenylosuccinate
Lyase Mutant H171a With Bound Adenylosuccinate Substrate
pdb|2PTR|B Chain B, Crystal Structure Of Escherichia Coli Adenylosuccinate
Lyase Mutant H171a With Bound Adenylosuccinate Substrate
Length = 462
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 3/90 (3%)
Query: 210 GYVSLLHSANPADFDADNCHLGLNNLAKNHNDQLKLAISEEWPHGPYAQSQAFSEIGDSV 269
G ++ H NP DF+ +LGL+N H KL +S W S +G +
Sbjct: 294 GSSTMPHKVNPIDFENSEGNLGLSNAVLQHLAS-KLPVS-RWQRD-LTDSTVLRNLGVGI 350
Query: 270 SYSQVLYADYYNAFMALLRDKSHHSRPLFH 299
Y+ + Y L ++ H L H
Sbjct: 351 GYALIAYQSTLKGVSKLEVNRDHLLDELDH 380
>pdb|2PTQ|A Chain A, Crystal Structure Of Escherichia Coli Adenylosuccinate
Lyase Mutant H171n With Bound Amp And Fumarate
pdb|2PTQ|B Chain B, Crystal Structure Of Escherichia Coli Adenylosuccinate
Lyase Mutant H171n With Bound Amp And Fumarate
Length = 462
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 3/90 (3%)
Query: 210 GYVSLLHSANPADFDADNCHLGLNNLAKNHNDQLKLAISEEWPHGPYAQSQAFSEIGDSV 269
G ++ H NP DF+ +LGL+N H KL +S W S +G +
Sbjct: 294 GSSTMPHKVNPIDFENSEGNLGLSNAVLQHLAS-KLPVS-RWQRD-LTDSTVLRNLGVGI 350
Query: 270 SYSQVLYADYYNAFMALLRDKSHHSRPLFH 299
Y+ + Y L ++ H L H
Sbjct: 351 GYALIAYQSTLKGVSKLEVNRDHLLDELDH 380
>pdb|4FZQ|A Chain A, Crystal Structure Of Hp0197-G5
pdb|4FZQ|B Chain B, Crystal Structure Of Hp0197-G5
pdb|4FZQ|C Chain C, Crystal Structure Of Hp0197-G5
pdb|4FZQ|D Chain D, Crystal Structure Of Hp0197-G5
pdb|4FZQ|E Chain E, Crystal Structure Of Hp0197-G5
pdb|4FZQ|F Chain F, Crystal Structure Of Hp0197-G5
Length = 79
Score = 27.7 bits (60), Expect = 10.0, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 160 YALLNGKSVEQVEEYVPVISSNIV---NMVSEIKKEGASNILVPGML 203
Y L GK+ ++V Y VI V N++SE EG + ILV G L
Sbjct: 32 YLLQEGKAGKKVSVYQDVIVDGKVMATNLLSETVVEGQNRILVKGSL 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,866,914
Number of Sequences: 62578
Number of extensions: 414910
Number of successful extensions: 973
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 969
Number of HSP's gapped (non-prelim): 24
length of query: 338
length of database: 14,973,337
effective HSP length: 99
effective length of query: 239
effective length of database: 8,778,115
effective search space: 2097969485
effective search space used: 2097969485
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)