BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037227
(90 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LJO|A Chain A, 3d Solution Structure Of Lipid Transfer Protein Lc-Ltp2
Length = 93
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 19 APACNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNNKAARQSICECLEAVAPMY 78
A +C +V ++L+PC+ YL PS CC GVK + N RQ+ C CL++ A
Sbjct: 1 AISCGAVTSDLSPCLTYLTGGPG-PSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSI 59
Query: 79 PRID 82
+++
Sbjct: 60 TKLN 63
>pdb|1BE2|A Chain A, Lipid Transfer Protein Complexed With Palmitate, Nmr, 10
Structures
pdb|1JTB|A Chain A, Lipid Transfer Protein Complexed With Palmitoyl Coenzyme
A, Nmr, 16 Structures
pdb|1LIP|A Chain A, Barley Lipid Transfer Protein (Nmr, 4 Structures)
Length = 91
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 22 CNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNNKAARQSICECLEAVA 75
C V +++ PC+ Y V+ PS CC GV+ + RQ++C CL+ +A
Sbjct: 3 CGQVDSKMKPCLTY-VQGGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIA 55
>pdb|1MID|A Chain A, Non-Specific Lipid Transfer Protein 1 From Barley In
Complex With L-Alfa-Lysophosphatidylcholine, Laudoyl
pdb|3GSH|A Chain A, Three-Dimensional Structure Of A Post Translational
Modified Barley Ltp1
pdb|3GSH|B Chain B, Three-Dimensional Structure Of A Post Translational
Modified Barley Ltp1
Length = 91
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 22 CNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNNKAARQSICECLEAVA 75
C V +++ PC+ Y V+ PS CC GV+ + RQ++C CL+ +A
Sbjct: 3 CGQVDSKMKPCLTY-VQGGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIA 55
>pdb|1FK0|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Capric Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK1|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Lauric Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK2|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Myristic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK3|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Palmitoleic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK4|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Stearic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK5|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Oleic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK6|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Alpha-Linolenic
Acid Revealed By High-Resolution X-Ray Crystallography
pdb|1FK7|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Ricinoleic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1AFH|A Chain A, Lipid Transfer Protein From Maize Seedlings, Nmr, 15
Structures
pdb|1MZL|A Chain A, Maize Nonspecific Lipid Transfer Protein
pdb|1MZM|A Chain A, Maize Nonspecific Lipid Transfer Protein Complexed With
Palmitate
Length = 93
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%)
Query: 19 APACNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNNKAARQSICECLEAVA 75
A +C V + + PC+ Y + PS CC+GV+S A R++ C CL+ A
Sbjct: 1 AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAA 57
>pdb|1UVA|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer
Protein-1 Complexes From Oryza Sativa
pdb|1UVB|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer
Protein-1 Complexes From Oryza Sativa
pdb|1UVC|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer
Protein-1 Complexes From Oryza Sativa
pdb|1UVC|B Chain B, Lipid Binding In Rice Nonspecific Lipid Transfer
Protein-1 Complexes From Oryza Sativa
pdb|1BV2|A Chain A, Lipid Transfer Protein From Rice Seeds, Nmr, 14
Structures
pdb|1RZL|A Chain A, Rice Nonspecific Lipid Transfer Protein
Length = 91
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 22 CNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNNKAARQSICECLEAVA 75
C V + + PC+ Y + A PS +CC+GV+S + A R++ C CL+ A
Sbjct: 3 CGQVNSAVGPCLTY-ARGGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAA 55
>pdb|1BWO|A Chain A, The Crystal Structure Of Wheat Non-Specific Transfer
Protein Complexed With Two Molecules Of Phospholipid At
2.1 A Resolution
pdb|1BWO|B Chain B, The Crystal Structure Of Wheat Non-Specific Transfer
Protein Complexed With Two Molecules Of Phospholipid At
2.1 A Resolution
pdb|1GH1|A Chain A, Nmr Structures Of Wheat Nonspecific Lipid Transfer
Protein
Length = 90
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 22 CNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNNKAARQSICECLEAVA 75
C V + + PC+ Y V+ PS CC GVK+ +++ RQS C CL+ +A
Sbjct: 3 CGHVDSLVRPCLSY-VQGGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIA 55
>pdb|1CZ2|A Chain A, Solution Structure Of Wheat Ns-Ltp Complexed With
Prostaglandin B2
Length = 90
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 22 CNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNNKAARQSICECLEAVA 75
C V + + PC+ Y V+ PS CC GVK+ +++ RQS C CL+ +A
Sbjct: 3 CGHVDSLVRPCLSY-VQGGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIA 55
>pdb|1T12|A Chain A, Solution Structure Of A New Ltp1
Length = 91
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 19 APACNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNNKAARQSICECLEAVAPMY 78
A C V + L PC+ YL P CC GVK+ + RQ C CL++ A
Sbjct: 1 AITCGQVTSNLAPCLAYL--RNTGPLGRCCGGVKALVNSARTTEDRQIACTCLKSAAGAI 58
Query: 79 PRIDNSLISGL 89
I+ +GL
Sbjct: 59 SGINLGKAAGL 69
>pdb|1SIY|A Chain A, Nmr Structure Of Mung Bean Non-Specific Lipid Transfer
Protein 1
Length = 91
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 22 CNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNNKAARQSICECLEAVAPMYPRI 81
C V L C+ +L K P SCC GVK+ + A R+++C CL+A A I
Sbjct: 3 CGQVQGNLAQCIGFLQKGGVVP-PSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRGI 61
Query: 82 D 82
+
Sbjct: 62 N 62
>pdb|2ALG|A Chain A, Crystal Structure Of Peach Pru P3, The Prototypic Member
Of The Family Of Plant Non-Specific Lipid Transfer
Protein Pan-Allergens
pdb|2ALG|B Chain B, Crystal Structure Of Peach Pru P3, The Prototypic Member
Of The Family Of Plant Non-Specific Lipid Transfer
Protein Pan-Allergens
pdb|2B5S|A Chain A, Crystal Structure Of Peach Pru P3, The Prototypic Member
Of The Family Of Plant Non-Specific Lipid Transfer
Protein Pan-Allergens
pdb|2B5S|B Chain B, Crystal Structure Of Peach Pru P3, The Prototypic Member
Of The Family Of Plant Non-Specific Lipid Transfer
Protein Pan-Allergens
Length = 92
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 22 CNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNNKAARQSICECLEAVAPMYPRI 81
C V + L PC+PY+ A P +CC G+++ RQ+ C CL+ ++ P +
Sbjct: 4 CGQVSSSLAPCIPYVRGGGAVP-PACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGV 62
Query: 82 D 82
+
Sbjct: 63 N 63
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,323,008
Number of Sequences: 62578
Number of extensions: 71593
Number of successful extensions: 150
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 127
Number of HSP's gapped (non-prelim): 21
length of query: 90
length of database: 14,973,337
effective HSP length: 57
effective length of query: 33
effective length of database: 11,406,391
effective search space: 376410903
effective search space used: 376410903
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)