Query 037227
Match_columns 90
No_of_seqs 115 out of 589
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 10:01:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037227.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037227hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01960 nsLTP1 nsLTP1: Non-spe 99.8 9.7E-22 2.1E-26 122.0 2.5 71 20-90 1-71 (89)
2 cd00010 AAI_LTSS AAI_LTSS: Alp 99.4 6.9E-14 1.5E-18 81.2 0.8 57 29-90 1-58 (63)
3 cd04660 nsLTP_like nsLTP_like: 99.3 6.1E-13 1.3E-17 80.0 0.4 59 22-90 1-61 (73)
4 PF14368 LTP_2: Probable lipid 99.1 5.3E-12 1.2E-16 78.0 -1.8 59 25-90 22-84 (96)
5 smart00499 AAI Plant lipid tra 98.6 2.3E-08 5.1E-13 58.6 1.1 60 22-90 1-67 (79)
6 PF00234 Tryp_alpha_amyl: Prot 98.3 2.4E-09 5.2E-14 65.7 -8.1 56 27-90 13-78 (90)
7 cd01959 nsLTP2 nsLTP2: Non-spe 98.0 1.8E-06 3.9E-11 51.2 0.6 52 27-90 4-56 (66)
8 PF14547 Hydrophob_seed: Hydro 49.9 8.6 0.00019 23.7 0.9 40 27-72 7-50 (85)
9 cd01958 HPS_like HPS_like: Hyd 34.3 22 0.00047 22.0 1.0 51 22-78 4-58 (85)
10 PF05617 Prolamin_like: Prolam 27.1 25 0.00055 19.9 0.4 19 38-56 23-41 (70)
No 1
>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.
Probab=99.84 E-value=9.7e-22 Score=121.99 Aligned_cols=71 Identities=34% Similarity=0.660 Sum_probs=66.7
Q ss_pred CCchhhhcCccCChHhhhCCCCCCchhhhcccCCCCccCCCcccchhhcccchhccCCCCCCChhhhccCC
Q 037227 20 PACNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNNKAARQSICECLEAVAPMYPRIDNSLISGLD 90 (90)
Q Consensus 20 ~~C~~v~~~l~pCl~yl~g~~~~Ps~~CC~gv~~l~~~a~t~~~r~~~C~Clk~~~~~~~~in~~~a~~LP 90 (90)
++|.++...|.||++|++|++..|+++||+|++++++.++|+.|||++|+|+++...++++||++|+.+||
T Consensus 1 ~~C~~v~~~l~~C~~y~~g~~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~~~~~~~i~~~~a~~LP 71 (89)
T cd01960 1 ISCGQVTSLLAPCLGYLTGGGPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAAGISGLNPGRAAGLP 71 (89)
T ss_pred CCHHHHHhhHHhHHHHHhCCCCCCChHHhhhhHHHhhccCCCCchhhhhhcccccccccCCCCHHHHHhCh
Confidence 47999999999999999998789999999999999999999999999999999988888669999999998
No 2
>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.
Probab=99.39 E-value=6.9e-14 Score=81.23 Aligned_cols=57 Identities=25% Similarity=0.587 Sum_probs=48.7
Q ss_pred ccCChHhhhCCCCCCchhhhcccCCCCccCCCcccchhhcccchhccCCCCCC-ChhhhccCC
Q 037227 29 LNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNNKAARQSICECLEAVAPMYPRI-DNSLISGLD 90 (90)
Q Consensus 29 l~pCl~yl~g~~~~Ps~~CC~gv~~l~~~a~t~~~r~~~C~Clk~~~~~~~~i-n~~~a~~LP 90 (90)
|.||++|++|++..|++.||++++++++. +++++|+++++......++ |.+++.+||
T Consensus 1 L~~C~~y~~~~~~~Ps~~CC~~l~~~~~~-----~~~ClC~~~~~~~~~~~~~~~~~~a~~LP 58 (63)
T cd00010 1 LAPCLSYLTGGATAPPSDCCSGLKSVVKS-----DPKCLCAALNGPGASLLGLKNATRALALP 58 (63)
T ss_pred CcchHHHHcCCCCCCChHHHHHHHHHHhc-----ChhhHHHHHcCccccccCcccHHHHHhch
Confidence 68999999987789999999999999853 6789999999876655445 799999987
No 3
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=99.28 E-value=6.1e-13 Score=79.97 Aligned_cols=59 Identities=27% Similarity=0.538 Sum_probs=46.3
Q ss_pred chhhhcCccCChHhhhCCC--CCCchhhhcccCCCCccCCCcccchhhcccchhccCCCCCCChhhhccCC
Q 037227 22 CNSVVNELNPCVPYLVKNE--AKPSDSCCAGVKSPMPYQNNKAARQSICECLEAVAPMYPRIDNSLISGLD 90 (90)
Q Consensus 22 C~~v~~~l~pCl~yl~g~~--~~Ps~~CC~gv~~l~~~a~t~~~r~~~C~Clk~~~~~~~~in~~~a~~LP 90 (90)
|..-...|+||++||+|++ ..|++.||++||++ +++ |.|.+.....++.||.+|+.+||
T Consensus 1 C~~~~~~L~~C~~yl~~~~~~~~Ps~~CC~~vk~~--------~~~--C~C~~~~~~~~~~i~~~~a~~Lp 61 (73)
T cd04660 1 CNMDLDLLAECQPYVTGPNPPPPPSRECCAALRRA--------DLP--CLCRYKTSLVLQIIDPDKAVYLP 61 (73)
T ss_pred CCCCHHHHHHHHHHHcCCCCCCCCCHHHHHHHHcC--------CcC--CEeeccCCCcccccCHHHHHHHH
Confidence 4444588999999999876 46999999999974 233 88887666555569999999987
No 4
>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A.
Probab=99.10 E-value=5.3e-12 Score=78.02 Aligned_cols=59 Identities=29% Similarity=0.595 Sum_probs=39.3
Q ss_pred hhcCccCC---hHhhhCCCCCCchhhhcccCCCCccCCCcccchhhcccchhcc-CCCCCCChhhhccCC
Q 037227 25 VVNELNPC---VPYLVKNEAKPSDSCCAGVKSPMPYQNNKAARQSICECLEAVA-PMYPRIDNSLISGLD 90 (90)
Q Consensus 25 v~~~l~pC---l~yl~g~~~~Ps~~CC~gv~~l~~~a~t~~~r~~~C~Clk~~~-~~~~~in~~~a~~LP 90 (90)
....|.|| +.|+++ ...|++.||+++|++.+ .|+.++|+.+++.. ..+ ++|.+|+..||
T Consensus 22 c~~~l~~c~~~~~~~~~-~~~Ps~~CC~~l~~~~~-----~~~~ClC~~~~~~~~~~~-~in~~~a~~Lp 84 (96)
T PF14368_consen 22 CANSLLPCCPCLCYVTG-GPAPSAACCSALKSVVQ-----ADPPCLCQLLNSPGAPGF-GINVTRALALP 84 (96)
T ss_dssp -HCCCCHH--HHHHHCC------HHHHHHHCC---------HCCHHHCCCC-CCHCHH-CCTCHHHHHHH
T ss_pred hHHHHhccccchhccCC-CCCCCHHHHHHHHHhcc-----CCCCCHHHhcCccccccC-CcCHHHHHHHH
Confidence 35557777 788884 67999999999999863 35779999998776 444 79999998876
No 5
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family.
Probab=98.55 E-value=2.3e-08 Score=58.57 Aligned_cols=60 Identities=28% Similarity=0.669 Sum_probs=44.7
Q ss_pred chhhhcCccCChHhhhCC--CCCCchhhhcccCCCCccCCCcccchhhcccchhccCCCC--C---CChhhhccCC
Q 037227 22 CNSVVNELNPCVPYLVKN--EAKPSDSCCAGVKSPMPYQNNKAARQSICECLEAVAPMYP--R---IDNSLISGLD 90 (90)
Q Consensus 22 C~~v~~~l~pCl~yl~g~--~~~Ps~~CC~gv~~l~~~a~t~~~r~~~C~Clk~~~~~~~--~---in~~~a~~LP 90 (90)
|.++...+.+|.+|+++. ...|+.+||++++.+. ...|+|........+ . ++..++.+||
T Consensus 1 C~~~~~~~~~c~~~~~~~~~~~~p~~~CC~~l~~~~---------~~~C~C~~~~~~~~~~~~~~~~~~~~a~~lp 67 (79)
T smart00499 1 CGQVLLQLAPCLSYLTGGSPGAPPSQQCCSQLRGLN---------SAQCRCLALRAAVLGILEIPGVNAQNAASLP 67 (79)
T ss_pred ChhhhhhHHhhHHHHcCCCCCCCCchHHHHHHHHhc---------ccCCcchhhhcccccccchhhhhHHHHHhhH
Confidence 677778888999999986 4688899999999986 135777654433222 1 4889998886
No 6
>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]. The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....
Probab=98.28 E-value=2.4e-09 Score=65.68 Aligned_cols=56 Identities=27% Similarity=0.548 Sum_probs=44.1
Q ss_pred cCccCChHhhhCCCCCCchhhhcccCCCCccCCCcccchhhcccchhccCCC----------CCCChhhhccCC
Q 037227 27 NELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNNKAARQSICECLEAVAPMY----------PRIDNSLISGLD 90 (90)
Q Consensus 27 ~~l~pCl~yl~g~~~~Ps~~CC~gv~~l~~~a~t~~~r~~~C~Clk~~~~~~----------~~in~~~a~~LP 90 (90)
..+.+|.+|++++...|+..||++|+.+ ++++.|..++..+.+. .+++..+|.+||
T Consensus 13 ~~l~~c~~~~~~~~~~~~~~CC~~L~~l--------~~~C~C~~i~~~~~~~~~q~~~~~~~~~~~~~~a~~LP 78 (90)
T PF00234_consen 13 VRLSPCLPYLQGGCQQPSQQCCQQLRQL--------DPQCRCEAIRQMVRQVIQQQQQGGQEMQIMAQRAQNLP 78 (90)
T ss_dssp SHHHGGHHHHTTSSSHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHSHHCTSTCSHHHHHHHHHHHHHH
T ss_pred ccccccHHHHhcccccchHHHhHHHHHH--------hHHhhCHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 4599999999997778999999999988 4578888888765542 147777777765
No 7
>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp
Probab=97.99 E-value=1.8e-06 Score=51.16 Aligned_cols=52 Identities=21% Similarity=0.556 Sum_probs=36.6
Q ss_pred cCccCChHhhhCCCCCCchhhhcccCCCCccCCCcccchhhcccchhccCCCC-CCChhhhccCC
Q 037227 27 NELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNNKAARQSICECLEAVAPMYP-RIDNSLISGLD 90 (90)
Q Consensus 27 ~~l~pCl~yl~g~~~~Ps~~CC~gv~~l~~~a~t~~~r~~~C~Clk~~~~~~~-~in~~~a~~LP 90 (90)
+.|.+|++|++++ ..||++||+.+|+- + .++|+=+++. .+. -||.++|..||
T Consensus 4 ~~L~~C~~ai~~~-~~Ps~~CC~~Lk~~--------~-~CLC~y~~~p--~l~~~i~~~~A~~l~ 56 (66)
T cd01959 4 TQLSPCLPAILGG-SPPSAACCAKLKEQ--------Q-SCLCQYAKNP--SLKQYVNSPNARKVL 56 (66)
T ss_pred hhcccCHHHHhCC-CCCCHHHHHHHhcC--------C-CCeeeeecCc--cHHhhcCcHHHHHHH
Confidence 4899999999974 68999999999951 1 4666644432 222 37777776653
No 8
>PF14547 Hydrophob_seed: Hydrophobic seed protein
Probab=49.91 E-value=8.6 Score=23.69 Aligned_cols=40 Identities=20% Similarity=0.462 Sum_probs=25.9
Q ss_pred cCccCChHhhh----CCCCCCchhhhcccCCCCccCCCcccchhhcccch
Q 037227 27 NELNPCVPYLV----KNEAKPSDSCCAGVKSPMPYQNNKAARQSICECLE 72 (90)
Q Consensus 27 ~~l~pCl~yl~----g~~~~Ps~~CC~gv~~l~~~a~t~~~r~~~C~Clk 72 (90)
.+|.-|.+.+. ..+..+..+||.-++.|.+. + -++|.|-.
T Consensus 7 lkLgvC~~vL~l~~~~~g~~~~~~CC~li~gL~d~----~--AA~CLC~a 50 (85)
T PF14547_consen 7 LKLGVCANVLGLVNLVIGNPPRQPCCSLIAGLADL----D--AAVCLCTA 50 (85)
T ss_pred hhhhhhhhhhhhhccccCCCCCCCcChHHhCcccc----h--HHHHHHHH
Confidence 46777888871 11234678999999999853 1 25666643
No 9
>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins. In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset
Probab=34.35 E-value=22 Score=21.97 Aligned_cols=51 Identities=18% Similarity=0.387 Sum_probs=30.0
Q ss_pred chhhhcCccCChHhhhCC----CCCCchhhhcccCCCCccCCCcccchhhcccchhccCCC
Q 037227 22 CNSVVNELNPCVPYLVKN----EAKPSDSCCAGVKSPMPYQNNKAARQSICECLEAVAPMY 78 (90)
Q Consensus 22 C~~v~~~l~pCl~yl~g~----~~~Ps~~CC~gv~~l~~~a~t~~~r~~~C~Clk~~~~~~ 78 (90)
|.--..+|.-|.+-+... +..|..+||.-++.|.+. + -.+|.|-.-.++.+
T Consensus 4 CP~dalkLgvCanvL~l~~~~~g~~~~~~CC~ll~GL~dl----d--AA~CLCtaikan~l 58 (85)
T cd01958 4 CPRDALKLGVCANVLGLSLLLLGTPAVQPCCPLIGGLADL----D--AAVCLCTAIKANIL 58 (85)
T ss_pred CCcchHHhchhHhhhhccccccCCCccchHHHHHcCchhh----h--eeeeeeeeeecccc
Confidence 433334566677766321 235668999999998753 1 25666665444433
No 10
>PF05617 Prolamin_like: Prolamin-like; InterPro: IPR008502 This entry consists of several proteins of unknown function found exclusively in Arabidopsis thaliana.
Probab=27.05 E-value=25 Score=19.95 Aligned_cols=19 Identities=16% Similarity=0.391 Sum_probs=14.2
Q ss_pred CCCCCCchhhhcccCCCCc
Q 037227 38 KNEAKPSDSCCAGVKSPMP 56 (90)
Q Consensus 38 g~~~~Ps~~CC~gv~~l~~ 56 (90)
|.....+++||..+..+-+
T Consensus 23 g~~~~i~~~CC~~i~~~g~ 41 (70)
T PF05617_consen 23 GNKKNIGPECCKAINKMGK 41 (70)
T ss_pred CCCCCCChHHHHHHHHHhH
Confidence 4336889999998887653
Done!