Query 037227
Match_columns 90
No_of_seqs 115 out of 589
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 17:00:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037227.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037227hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ljo_A Non-specific lipid-tran 99.9 2.8E-25 9.5E-30 139.0 -3.3 71 19-90 1-71 (93)
2 1afh_A Maize nonspecific lipid 99.9 1.3E-23 4.4E-28 131.1 -1.9 72 19-90 1-72 (93)
3 1bwo_A NS-LTP1, nonspecific li 99.8 3E-23 1E-27 128.8 -2.4 70 20-90 1-70 (90)
4 1t12_A LTP 1, nonspecific lipi 99.8 2.9E-23 1E-27 129.1 -4.2 70 19-90 1-70 (91)
5 1siy_A LTP 1, NS-LTP1, nonspec 99.8 1.6E-22 5.3E-27 125.7 -2.1 70 20-90 1-70 (91)
6 2alg_A Non-specific lipid tran 99.8 5.8E-22 2E-26 123.4 -4.5 71 19-90 1-71 (92)
7 2rkn_A DIR1 protein, AT5G48485 99.3 1.9E-14 6.5E-19 86.5 -2.9 61 19-90 2-66 (77)
8 1l6h_A LTP2, non-specific lipi 98.9 2.8E-11 9.5E-16 71.4 -2.6 51 27-90 6-58 (69)
9 1n89_A Lipid transfer protein; 98.9 1.8E-11 6.2E-16 71.8 -4.0 51 27-90 5-57 (67)
10 4gyx_A Type III collagen fragm 48.0 4.5 0.00015 19.3 0.3 11 41-51 21-31 (31)
11 2e2s_A Agelenin; cystine knot, 44.5 5.4 0.00019 19.9 0.2 21 32-52 3-23 (36)
12 1hyp_A Hydrophobic protein fro 41.4 6.3 0.00022 23.3 0.2 32 20-56 6-37 (80)
13 1ag7_A Conotoxin GS; neurotoxi 31.6 10 0.00035 18.3 0.1 14 40-53 6-19 (34)
14 1eyo_A Conotoxin TVIIA; cystin 22.4 28 0.00097 16.4 0.7 13 41-53 7-19 (30)
15 1wqb_A Aptotoxin VII; spider'S 20.3 17 0.00058 17.3 -0.4 8 45-52 16-23 (32)
No 1
>2ljo_A Non-specific lipid-transfer protein 2; lipid transport; NMR {Lens culinaris}
Probab=99.88 E-value=2.8e-25 Score=138.97 Aligned_cols=71 Identities=32% Similarity=0.718 Sum_probs=66.8
Q ss_pred CCCchhhhcCccCChHhhhCCCCCCchhhhcccCCCCccCCCcccchhhcccchhccCCCCCCChhhhccCC
Q 037227 19 APACNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNNKAARQSICECLEAVAPMYPRIDNSLISGLD 90 (90)
Q Consensus 19 ~~~C~~v~~~l~pCl~yl~g~~~~Ps~~CC~gv~~l~~~a~t~~~r~~~C~Clk~~~~~~~~in~~~a~~LP 90 (90)
+++|++|...|.||++||+|+ +.|++.||+|+|+|++.++|++|||++|+|+|+.+..+++||.+||++||
T Consensus 1 AisC~~v~~~L~pCl~Yv~g~-~~p~~~CC~gv~~l~~~a~t~~dr~~~C~clk~~a~~~~~in~~~a~~LP 71 (93)
T 2ljo_A 1 AISCGAVTSDLSPCLTYLTGG-PGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALP 71 (93)
T ss_dssp CCSSHHHHHHHHHHHHHHTTS-SCCCHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHGGGCTTCCHHHHHHHH
T ss_pred CCCHHHHHHHHHhHHHHHcCC-CCCCCchhhHHHHHHHHhcCcccHHHHHHhHHhhhhccCCcCHHHHHhhh
Confidence 589999999999999999984 57999999999999999999999999999999998888789999999997
No 2
>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A*
Probab=99.85 E-value=1.3e-23 Score=131.11 Aligned_cols=72 Identities=26% Similarity=0.592 Sum_probs=67.6
Q ss_pred CCCchhhhcCccCChHhhhCCCCCCchhhhcccCCCCccCCCcccchhhcccchhccCCCCCCChhhhccCC
Q 037227 19 APACNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNNKAARQSICECLEAVAPMYPRIDNSLISGLD 90 (90)
Q Consensus 19 ~~~C~~v~~~l~pCl~yl~g~~~~Ps~~CC~gv~~l~~~a~t~~~r~~~C~Clk~~~~~~~~in~~~a~~LP 90 (90)
+++|+++...|.||++|++|++..|+++||+|||+++++|+|++|||..|+|++..+.++++||+++|.+||
T Consensus 1 a~~C~~v~~~L~pCl~y~~~~~~~Ps~~CC~gv~~l~~~a~t~~dr~~~ClC~~~~~~~~~~in~~~A~~LP 72 (93)
T 1afh_A 1 AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIP 72 (93)
T ss_dssp CCSSHHHHHHHGGGHHHHTTSCCSCCHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHTTSTTCCHHHHHHHH
T ss_pred CCChHHHHHhccCcHHHHcCCCCCChHHHHHHHHHHHHhhcCCCCCcccCEeeccccccccCcCHHHHHHHH
Confidence 478999999999999999997778999999999999999999999999999999988888789999999987
No 3
>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A*
Probab=99.84 E-value=3e-23 Score=128.83 Aligned_cols=70 Identities=27% Similarity=0.596 Sum_probs=65.7
Q ss_pred CCchhhhcCccCChHhhhCCCCCCchhhhcccCCCCccCCCcccchhhcccchhccCCCCCCChhhhccCC
Q 037227 20 PACNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNNKAARQSICECLEAVAPMYPRIDNSLISGLD 90 (90)
Q Consensus 20 ~~C~~v~~~l~pCl~yl~g~~~~Ps~~CC~gv~~l~~~a~t~~~r~~~C~Clk~~~~~~~~in~~~a~~LP 90 (90)
++|+++...|.||++|++|++. |+++||+|||+|+++|+|++|||..|+|+|+.+.++++||+++|.+||
T Consensus 1 i~C~~v~~~L~pCl~y~~~~~~-Ps~~CC~~lk~l~~~a~t~~dr~~~ClClk~~~~~~~~in~~~A~~LP 70 (90)
T 1bwo_A 1 IDCGHVDSLVRPCLSYVQGGPG-PSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLNEDNARSIP 70 (90)
T ss_dssp CCHHHHHHHHGGGHHHHTTCSC-CCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTCTTCCHHHHHTHH
T ss_pred CCHHHHHHhhcccHHHHcCCCC-CCHHHhHHHHHHHhhccCCCCCCccCcCccCchhccCCcCHHHHHHHH
Confidence 5899999999999999998766 999999999999999999999999999999988888789999999987
No 4
>1t12_A LTP 1, nonspecific lipid-transfer protein 1; cystein rich protein, lipid transport; NMR {Nicotiana tabacum}
Probab=99.83 E-value=2.9e-23 Score=129.14 Aligned_cols=70 Identities=31% Similarity=0.621 Sum_probs=65.2
Q ss_pred CCCchhhhcCccCChHhhhCCCCCCchhhhcccCCCCccCCCcccchhhcccchhccCCCCCCChhhhccCC
Q 037227 19 APACNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNNKAARQSICECLEAVAPMYPRIDNSLISGLD 90 (90)
Q Consensus 19 ~~~C~~v~~~l~pCl~yl~g~~~~Ps~~CC~gv~~l~~~a~t~~~r~~~C~Clk~~~~~~~~in~~~a~~LP 90 (90)
+++|+++...|.||++|++|++. |+ .||+|||+|++.|+|++|||..|+|+|+.+..+++||+++|.+||
T Consensus 1 a~~C~~v~~~L~pCl~y~~~~~~-P~-~CC~gv~~l~~~a~t~~dr~~~ClClk~~~~~~~~in~~~A~~LP 70 (91)
T 1t12_A 1 AITCGQVTSNLAPCLAYLRNTGP-LG-RCCGGVKALVNSARTTEDRQIACTCLKSAAGAISGINLGKAAGLP 70 (91)
T ss_dssp CCCHHHHHHHTHHHHHHHTTSSC-CT-THHHHHHHHHHTTCSTHHHHHHHHHHHHHHHHCTTCCHHHHHHHH
T ss_pred CCChHHHHHhccCcHHHHcCCCC-hH-HHHHHHHHHHhhccCCCCCCccCCCccccccccCCcChhHHHHHH
Confidence 47899999999999999999777 88 999999999999999999999999999887777789999999987
No 5
>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var}
Probab=99.82 E-value=1.6e-22 Score=125.74 Aligned_cols=70 Identities=30% Similarity=0.590 Sum_probs=65.3
Q ss_pred CCchhhhcCccCChHhhhCCCCCCchhhhcccCCCCccCCCcccchhhcccchhccCCCCCCChhhhccCC
Q 037227 20 PACNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNNKAARQSICECLEAVAPMYPRIDNSLISGLD 90 (90)
Q Consensus 20 ~~C~~v~~~l~pCl~yl~g~~~~Ps~~CC~gv~~l~~~a~t~~~r~~~C~Clk~~~~~~~~in~~~a~~LP 90 (90)
++|+++...|.||++|++|++. |+++||+++|+|++.|+|++|||..|+|+|+.+.++++||+++|.+||
T Consensus 1 i~C~~v~~~L~pCl~yv~~~~~-Ps~~CC~~lk~l~~~a~t~~d~~~~ClC~k~~~~~~~~in~~~A~~LP 70 (91)
T 1siy_A 1 MTCGQVQGNLAQCIGFLQKGGV-VPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRGINPNNAEALP 70 (91)
T ss_dssp CCTTTTHHHHHHHHHHHTSCSC-CCHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred CCHHHHHHhccCcHHHHhCCCC-CcHHHHHHHHHHHhhhccCCCCCcCCcccCCcccccCCcCHHHHHHHH
Confidence 5799999999999999998665 999999999999999999999999999999988888779999999987
No 6
>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A*
Probab=99.79 E-value=5.8e-22 Score=123.38 Aligned_cols=71 Identities=24% Similarity=0.626 Sum_probs=65.3
Q ss_pred CCCchhhhcCccCChHhhhCCCCCCchhhhcccCCCCccCCCcccchhhcccchhccCCCCCCChhhhccCC
Q 037227 19 APACNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNNKAARQSICECLEAVAPMYPRIDNSLISGLD 90 (90)
Q Consensus 19 ~~~C~~v~~~l~pCl~yl~g~~~~Ps~~CC~gv~~l~~~a~t~~~r~~~C~Clk~~~~~~~~in~~~a~~LP 90 (90)
+++|+++...|.||++|++|++ .|+++||+|||+|+++|+|++|||..|+|++..+.++++||+++|.+||
T Consensus 1 ~~~C~~v~~~L~pCl~y~~~~~-~p~~~CC~~lk~l~~~a~t~~d~~~~ClC~~~~~~~~~~in~~~A~~LP 71 (92)
T 2alg_A 1 MITCGQVSSSLAPCIPYVRGGG-AVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALP 71 (92)
T ss_dssp CCCHHHHHHHHGGGHHHHHHCS-CCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHSTTCCHHHHHHHH
T ss_pred CCChHHHHHhccCcHHHHcCCC-CCCHHHHHHHHHHHhhhcccCCCCcCCccccCcccccCccChHHHHHHH
Confidence 4789999999999999999855 5899999999999999999999999999999887777789999999987
No 7
>2rkn_A DIR1 protein, AT5G48485; LTP, defense signaling protein, signaling protein, lipid TRA; HET: LP3; 1.60A {Arabidopsis thaliana}
Probab=99.34 E-value=1.9e-14 Score=86.46 Aligned_cols=61 Identities=30% Similarity=0.557 Sum_probs=49.6
Q ss_pred CCCchhhhcCccCChHhhhCC-CCCCchhhhcccCCCCccCCCcccchhhcccchhc---cCCCCCCChhhhccCC
Q 037227 19 APACNSVVNELNPCVPYLVKN-EAKPSDSCCAGVKSPMPYQNNKAARQSICECLEAV---APMYPRIDNSLISGLD 90 (90)
Q Consensus 19 ~~~C~~v~~~l~pCl~yl~g~-~~~Ps~~CC~gv~~l~~~a~t~~~r~~~C~Clk~~---~~~~~~in~~~a~~LP 90 (90)
..+|+++...|.||++|++++ ...|+++||++||+ .|+ .|.|.+.. +.++ +||.+++..||
T Consensus 2 ~~~C~~~~~~L~pC~~yv~~~~~~~Ps~~CC~~lk~--------~~~--~ClC~~~~~~~~~~~-gin~~~A~~LP 66 (77)
T 2rkn_A 2 IDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQH--------ADF--ACLCGYKNSPWLGSF-GVDPELASALP 66 (77)
T ss_dssp CCBTTBCHHHHHHHGGGGBSSSCCCCCHHHHHHHTT--------CCH--HHHHTTTTCHHHHHH-TBCHHHHHHHH
T ss_pred cchHHhHHHhHhhCHHHHcCCCCCCCCHHHHHHHHh--------cCc--CCcCcccCCcchhhc-CcCHHHHHHHH
Confidence 468999999999999999983 47899999999997 244 67777654 4455 69999999886
No 8
>1l6h_A LTP2, non-specific lipid transfer protein; NSLTP2, plant LTP, lipid transport; NMR {Oryza sativa} SCOP: a.52.1.1
Probab=98.92 E-value=2.8e-11 Score=71.36 Aligned_cols=51 Identities=18% Similarity=0.411 Sum_probs=39.8
Q ss_pred cCccCChHhhhCCCCCCchhhhcccCCCCccCCCcccchhhccc--chhccCCCCCCChhhhccCC
Q 037227 27 NELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNNKAARQSICEC--LEAVAPMYPRIDNSLISGLD 90 (90)
Q Consensus 27 ~~l~pCl~yl~g~~~~Ps~~CC~gv~~l~~~a~t~~~r~~~C~C--lk~~~~~~~~in~~~a~~LP 90 (90)
+.|.||++||+++ ..||++||++||+ +..|.| +|+.... ..||.++|.+||
T Consensus 6 ~~L~pC~~~v~~~-~~Ps~~CC~~lk~-----------~~~ClC~~~k~~~~~-~~in~~~A~~Lp 58 (69)
T 1l6h_A 6 GQLTVCTGAIAGG-ARPTAACCSSLRA-----------QQGCFCQFAKDPRYG-RYVNSPNARKAV 58 (69)
T ss_dssp TTHHHHHHHHTTC-CSTTHHHHHHHHH-----------HHHHHHHHTTCSSHH-HHTTTTTGGGCC
T ss_pred hhcccCHHHHcCC-CCCCHHHHHhhCC-----------CCCCCCccccCcccc-cccCHHHHHHHH
Confidence 4789999999985 5799999999984 257888 6653222 159999999997
No 9
>1n89_A Lipid transfer protein; lipid transport; HET: PGM; NMR {Triticum turgidum subsp} SCOP: a.52.1.1 PDB: 1tuk_A*
Probab=98.90 E-value=1.8e-11 Score=71.78 Aligned_cols=51 Identities=24% Similarity=0.451 Sum_probs=39.2
Q ss_pred cCccCChHhhhCCCCCCchhhhcccCCCCccCCCcccchhhccc--chhccCCCCCCChhhhccCC
Q 037227 27 NELNPCVPYLVKNEAKPSDSCCAGVKSPMPYQNNKAARQSICEC--LEAVAPMYPRIDNSLISGLD 90 (90)
Q Consensus 27 ~~l~pCl~yl~g~~~~Ps~~CC~gv~~l~~~a~t~~~r~~~C~C--lk~~~~~~~~in~~~a~~LP 90 (90)
+.|.||++||+++ ..||++||++||+ +..|.| +|+.... ..||.++|.+||
T Consensus 5 ~~L~pC~~~v~~~-~~Ps~~CC~~lk~-----------~~~ClC~~~k~~~~~-~~in~~~A~~Lp 57 (67)
T 1n89_A 5 SQLAVCASAILSG-AKPSGECCGNLRA-----------QQGCFCQYAKDPTYG-QYIRSPHARDTL 57 (67)
T ss_dssp STTHHHHHHHTTC-CCCCHHHHHHHHH-----------HSSHHHHGGGCSTTH-HHHTCHHHHHHH
T ss_pred hhcccCHHHHcCC-CCCCHHHHHhhCC-----------CCCCCCccccCcccc-cccCHHHHHHHH
Confidence 4789999999985 5799999999984 247888 6653322 158999998876
No 10
>4gyx_A Type III collagen fragment in A HOST peptide STAB the cysteine knot; collagen triple helix, type III collagen cysteine knot, BLOO clotting; 1.49A {Homo sapiens}
Probab=48.01 E-value=4.5 Score=19.28 Aligned_cols=11 Identities=45% Similarity=1.247 Sum_probs=5.9
Q ss_pred CCCchhhhccc
Q 037227 41 AKPSDSCCAGV 51 (90)
Q Consensus 41 ~~Ps~~CC~gv 51 (90)
+.|+..||.|+
T Consensus 21 pgppgpccggv 31 (31)
T 4gyx_A 21 PGPPGPCCGGV 31 (31)
T ss_dssp CCCCCCCC---
T ss_pred CCCCCCCccCC
Confidence 45677899875
No 11
>2e2s_A Agelenin; cystine knot, presynaptic calcium channel inhibitor, toxin; NMR {Allagelena opulenta}
Probab=44.48 E-value=5.4 Score=19.91 Aligned_cols=21 Identities=33% Similarity=0.721 Sum_probs=11.7
Q ss_pred ChHhhhCCCCCCchhhhcccC
Q 037227 32 CVPYLVKNEAKPSDSCCAGVK 52 (90)
Q Consensus 32 Cl~yl~g~~~~Ps~~CC~gv~ 52 (90)
|+||=.--..--.+.||+|+|
T Consensus 3 Clp~n~fCn~~sGPrCCsgl~ 23 (36)
T 2e2s_A 3 CLPHNRFCNALSGPRCCSGLK 23 (36)
T ss_dssp SBCTTSCCCSSSSCCBCTTCC
T ss_pred ccCCCCCcccccCCcccCCCc
Confidence 555533212233467999976
No 12
>1hyp_A Hydrophobic protein from soybean; hydrophobic SEED protein; 1.80A {Glycine max} SCOP: a.52.1.1
Probab=41.44 E-value=6.3 Score=23.31 Aligned_cols=32 Identities=28% Similarity=0.570 Sum_probs=24.3
Q ss_pred CCchhhhcCccCChHhhhCCCCCCchhhhcccCCCCc
Q 037227 20 PACNSVVNELNPCVPYLVKNEAKPSDSCCAGVKSPMP 56 (90)
Q Consensus 20 ~~C~~v~~~l~pCl~yl~g~~~~Ps~~CC~gv~~l~~ 56 (90)
.+|. +|.-|.+-+.| ...|..+||.-++.|.+
T Consensus 6 ~~CP----kLgvCanvL~g-~~~~~~~CC~Ll~GL~d 37 (80)
T 1hyp_A 6 PSCP----DLSICLNILGG-SLGTVDDCCALIGGLGD 37 (80)
T ss_dssp CCSC----CCGGGGGGGGT-CCTTHHHHHHHHHTSCH
T ss_pred CCCC----chhHHHHHhCc-CCCCCCccchhhhCcch
Confidence 3566 68889988864 33477899999999985
No 13
>1ag7_A Conotoxin GS; neurotoxin, MU-conotoxin, sodium channel blocker, cystine knot motif; HET: HYP CGU; NMR {Conus geographus} SCOP: g.3.6.1
Probab=31.60 E-value=10 Score=18.33 Aligned_cols=14 Identities=21% Similarity=0.793 Sum_probs=9.4
Q ss_pred CCCCchhhhcccCC
Q 037227 40 EAKPSDSCCAGVKS 53 (90)
Q Consensus 40 ~~~Ps~~CC~gv~~ 53 (90)
+..=+++||.|++-
T Consensus 6 gsrcppqccmglrc 19 (34)
T 1ag7_A 6 GSRCPPQCCMGLRC 19 (34)
T ss_dssp TSCSSSCBCTTEEE
T ss_pred CCCCChhhceeeec
Confidence 34445679999873
No 14
>1eyo_A Conotoxin TVIIA; cystine knot motif; HET: HYP; NMR {Synthetic} SCOP: g.3.6.1
Probab=22.39 E-value=28 Score=16.41 Aligned_cols=13 Identities=23% Similarity=0.738 Sum_probs=8.9
Q ss_pred CCCchhhhcccCC
Q 037227 41 AKPSDSCCAGVKS 53 (90)
Q Consensus 41 ~~Ps~~CC~gv~~ 53 (90)
..=++.||.|++-
T Consensus 7 srcpp~ccmgl~c 19 (30)
T 1eyo_A 7 SRCPPVCCMGLMC 19 (30)
T ss_dssp SSCSSSBCTTBCC
T ss_pred CCCCchheeeeee
Confidence 3445679999873
No 15
>1wqb_A Aptotoxin VII; spider'S venom, cystein framework, cystine knot motif; NMR {Synthetic}
Probab=20.31 E-value=17 Score=17.33 Aligned_cols=8 Identities=50% Similarity=1.286 Sum_probs=6.4
Q ss_pred hhhhcccC
Q 037227 45 DSCCAGVK 52 (90)
Q Consensus 45 ~~CC~gv~ 52 (90)
-+||+|+|
T Consensus 16 wpccsglk 23 (32)
T 1wqb_A 16 WPCCSGLK 23 (32)
T ss_dssp SCBCTTCE
T ss_pred CccccCcc
Confidence 46999987
Done!