BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037228
(171 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FGY|A Chain A, Crystal Structure Of A Ntf2-Like Protein (Bxe_b1094) From
Burkholderia Xenovorans Lb400 At 1.59 A Resolution
pdb|3FGY|B Chain B, Crystal Structure Of A Ntf2-Like Protein (Bxe_b1094) From
Burkholderia Xenovorans Lb400 At 1.59 A Resolution
Length = 135
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 48/119 (40%), Gaps = 12/119 (10%)
Query: 18 EYNIRVVKTLYDALNSFDVKTVHRLLTSDLEWWFHG--PPGHQHLMHMLTGS--SSSSED 73
+ N+++VK + A D K + + D+EW G P H H + +SE
Sbjct: 5 QENVQIVKDFFAAXGRGDKKGLLAVSAEDIEWIIPGEWPLAGTHRGHAALAALLQKASEX 64
Query: 74 KRCFTFVPLSTVAFGPTVIVEGHSKEHSVS--------WVHAWTVTDGIITQVREYFNT 124
P VA G V+V G + S WV A TV +T +REY +T
Sbjct: 65 VEISYPEPPEFVAQGERVLVVGFATGRVKSTNRTFEDDWVFAITVRKSKVTSIREYIDT 123
>pdb|3HZI|A Chain A, Structure Of Mdt Protein
Length = 440
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 43 LTSDLEWWFHGPPGHQHLMHMLTGSSSSSEDKRCFTFVPLSTVAFGPTVIVEGHSKEHSV 102
L S +++ G PG +M L GSS + +D+ F + G T +GH+K SV
Sbjct: 261 LPSSVKYESDGGPGIARIMAFLXGSSEALKDRYDFMKFQVFQWLIGAT---QGHAKNFSV 317
>pdb|3FBR|A Chain A, Structure Of Hipa-Amppnp-Peptide
Length = 437
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 43 LTSDLEWWFHGPPGHQHLMHMLTGSSSSSEDKRCFTFVPLSTVAFGPTVIVEGHSKEHSV 102
L S +++ G PG +M L GSS + +D+ F + G T +GH+K SV
Sbjct: 261 LPSSVKYESDGGPGIARIMAFLMGSSEALKDRYDFMKFQVFQWLIGAT---QGHAKNFSV 317
>pdb|3TPB|A Chain A, Structure Of Hipa(S150a)
Length = 440
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 43 LTSDLEWWFHGPPGHQHLMHMLTGSSSSSEDKRCFTFVPLSTVAFGPTVIVEGHSKEHSV 102
L S +++ G PG +M L GSS + +D+ F + G T +GH+K SV
Sbjct: 261 LPSSVKYESDGGPGIARIMAFLMGSSEALKDRYDFMKFQVFQWLIGAT---QGHAKNFSV 317
>pdb|3TPT|A Chain A, Structure Of Hipa(D309q) Bound To Adp
pdb|3TPT|B Chain B, Structure Of Hipa(D309q) Bound To Adp
Length = 440
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 43 LTSDLEWWFHGPPGHQHLMHMLTGSSSSSEDKRCFTFVPLSTVAFGPTVIVEGHSKEHSV 102
L S +++ G PG +M L GSS + +D+ F + G T +GH+K SV
Sbjct: 261 LPSSVKYESDGGPGIARIMAFLMGSSEALKDRYDFMKFQVFQWLIGAT---QGHAKNFSV 317
>pdb|3DNV|A Chain A, Mdt Protein
Length = 440
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 43 LTSDLEWWFHGPPGHQHLMHMLTGSSSSSEDKRCFTFVPLSTVAFGPTVIVEGHSKEHSV 102
L S +++ G PG +M L GSS + +D+ F + G T +GH+K SV
Sbjct: 261 LPSSVKYESDGGPGIARIMAFLXGSSEALKDRYDFMKFQVFQWLIGAT---QGHAKNFSV 317
>pdb|3TPE|A Chain A, The Phipa P3121 Structure
pdb|3TPV|B Chain B, Structure Of Phipa Bound To Adp
Length = 440
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 43 LTSDLEWWFHGPPGHQHLMHMLTGSSSSSEDKRCFTFVPLSTVAFGPTVIVEGHSKEHSV 102
L S +++ G PG +M L GSS + +D+ F + G T +GH+K SV
Sbjct: 261 LPSSVKYESDGGPGIARIMAFLMGSSEALKDRYDFMKFQVFQWLIGAT---DGHAKNFSV 317
>pdb|3TPD|A Chain A, Structure Of Phipa, Monoclinic Form
Length = 440
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 43 LTSDLEWWFHGPPGHQHLMHMLTGSSSSSEDKRCFTFVPLSTVAFGPTVIVEGHSKEHSV 102
L S +++ G PG +M L GSS + +D+ F + G T +GH+K SV
Sbjct: 261 LPSSVKYESDGGPGIARIMAFLMGSSEALKDRYDFMKFQVFQWLIGAT---DGHAKNFSV 317
>pdb|2WIU|A Chain A, Mercury-Modified Bacterial Persistence Regulator Hipba
pdb|2WIU|C Chain C, Mercury-Modified Bacterial Persistence Regulator Hipba
Length = 446
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 43 LTSDLEWWFHGPPGHQHLMHMLTGSSSSSEDKRCFTFVPLSTVAFGPTVIVEGHSKEHSV 102
L S +++ G PG +M L GSS + +D+ F + G T +GH+K SV
Sbjct: 261 LPSSVKYESDGGPGIARIMAFLMGSSEALKDRYDFMKFQVFQWLIGAT---DGHAKNFSV 317
>pdb|3F7F|A Chain A, Structure Of Nup120
pdb|3F7F|B Chain B, Structure Of Nup120
pdb|3F7F|C Chain C, Structure Of Nup120
pdb|3F7F|D Chain D, Structure Of Nup120
Length = 729
Score = 27.7 bits (60), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 16 EDEYNIRVVKTLYDALNSFDVKTV 39
E+++ I +K L+D LNSFD+ V
Sbjct: 559 ENQFEITNLKILFDELNSFDIPVV 582
>pdb|3H7N|A Chain A, Structure Of Nup120
pdb|3H7N|B Chain B, Structure Of Nup120
pdb|3H7N|C Chain C, Structure Of Nup120
pdb|3H7N|D Chain D, Structure Of Nup120
Length = 729
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 16 EDEYNIRVVKTLYDALNSFDVKTV 39
E+++ I +K L+D LNSFD+ V
Sbjct: 559 ENQFEITNLKILFDELNSFDIPVV 582
>pdb|3HXR|A Chain A, Nucleoporin Nup120 From S.Cerevisiae (Aa 1-757)
Length = 761
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 16 EDEYNIRVVKTLYDALNSFDVKTV 39
E+++ I +K L+D LNSFD+ V
Sbjct: 563 ENQFEITNLKILFDELNSFDIPVV 586
>pdb|1QI5|A Chain A, Mutant (D294n) Maltotetraose-Forming Exo-Amylase In
Complex With Maltotetraose
Length = 429
Score = 26.9 bits (58), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 43/131 (32%), Gaps = 26/131 (19%)
Query: 1 MCISELANSKASVDNEDEYNI----RVVKTLYDALNS--FDVKTVHRLLTSDLEWWFHGP 54
C+ EL + N D N +++K D FD R+ + W HG
Sbjct: 215 FCVGELWKGPSEYPNWDWRNTASWQQIIKDWSDRAKCPVFDFALKERMQNGSIADWKHG- 273
Query: 55 PGHQHLMHMLTGSSSSSEDKRCFTFVPLSTVAFGPTVIVEGHSKEHSVSWVHAWTVTDGI 114
L G+ + TFV + P G + H W + DG+
Sbjct: 274 ---------LNGNPDPRWREVAVTFVDNHNTGYSP-----GQNGGQ-----HHWALQDGL 314
Query: 115 ITQVREYFNTS 125
I Q Y TS
Sbjct: 315 IRQAYAYILTS 325
>pdb|3E20|C Chain C, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
pdb|3E20|B Chain B, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
pdb|3E20|H Chain H, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
pdb|3E20|K Chain K, Crystal Structure Of S.Pombe Erf1ERF3 COMPLEX
Length = 441
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 32 NSFDVKTVHRLLTSDLEWWFHGPPGHQHLMHMLTGSS 68
N F + + LL SD + F GHQ L +++GS+
Sbjct: 134 NKFHTEALAELLESDQRFGFIVMDGHQTLYGVVSGSA 170
>pdb|1QPK|A Chain A, Mutant (D193g) Maltotetraose-Forming Exo-Amylase In
Complex With Maltotetraose
Length = 418
Score = 26.6 bits (57), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 43/131 (32%), Gaps = 26/131 (19%)
Query: 1 MCISELANSKASVDNEDEYNI----RVVKTLYDALNS--FDVKTVHRLLTSDLEWWFHGP 54
C+ EL + N D N +++K D FD R+ + W HG
Sbjct: 215 FCVGELWKGPSEYPNWDWRNTASWQQIIKDWSDRAKCPVFDFALKERMQNGSIADWKHG- 273
Query: 55 PGHQHLMHMLTGSSSSSEDKRCFTFVPLSTVAFGPTVIVEGHSKEHSVSWVHAWTVTDGI 114
L G+ + TFV + P G + H W + DG+
Sbjct: 274 ---------LNGNPDPRWREVAVTFVDNHDTGYSP-----GQNGGQ-----HHWALQDGL 314
Query: 115 ITQVREYFNTS 125
I Q Y TS
Sbjct: 315 IRQAYAYILTS 325
>pdb|2AMG|A Chain A, Structure Of Hydrolase (Glycosidase)
Length = 418
Score = 26.6 bits (57), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 43/131 (32%), Gaps = 26/131 (19%)
Query: 1 MCISELANSKASVDNEDEYNI----RVVKTLYDALNS--FDVKTVHRLLTSDLEWWFHGP 54
C+ EL + N D N +++K D FD R+ + W HG
Sbjct: 215 FCVGELWKGPSEYPNWDWRNTASWQQIIKDWSDRAKCPVFDFALKERMQNGSIADWKHG- 273
Query: 55 PGHQHLMHMLTGSSSSSEDKRCFTFVPLSTVAFGPTVIVEGHSKEHSVSWVHAWTVTDGI 114
L G+ + TFV + P G + H W + DG+
Sbjct: 274 ---------LNGNPDPRWREVAVTFVDNHDTGYSP-----GQNGGQ-----HHWALQDGL 314
Query: 115 ITQVREYFNTS 125
I Q Y TS
Sbjct: 315 IRQAYAYILTS 325
>pdb|1QI3|A Chain A, Mutant (D193n) Maltotetraose-Forming Exo-Amylase In
Complex With Maltotetraose
Length = 429
Score = 26.6 bits (57), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 30/131 (22%), Positives = 43/131 (32%), Gaps = 26/131 (19%)
Query: 1 MCISELANSKASVDNEDEYNI----RVVKTLYDALNS--FDVKTVHRLLTSDLEWWFHGP 54
C+ EL + N D N +++K D FD R+ + W HG
Sbjct: 215 FCVGELWKGPSEYPNWDWRNTASWQQIIKDWSDRAKCPVFDFALKERMQNGSIADWKHG- 273
Query: 55 PGHQHLMHMLTGSSSSSEDKRCFTFVPLSTVAFGPTVIVEGHSKEHSVSWVHAWTVTDGI 114
L G+ + TFV + P G + H W + DG+
Sbjct: 274 ---------LNGNPDPRWREVAVTFVDNHDTGYSP-----GQNGGQ-----HHWALQDGL 314
Query: 115 ITQVREYFNTS 125
I Q Y TS
Sbjct: 315 IRQAYAYILTS 325
>pdb|3DNT|A Chain A, Structures Of Mdt Proteins
pdb|3DNT|B Chain B, Structures Of Mdt Proteins
pdb|3DNU|A Chain A, Structure Of Mdt Protein
Length = 440
Score = 26.6 bits (57), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 43 LTSDLEWWFHGPPGHQHLMHMLTGSSSSSEDKRCFTFVPLSTVAFGPTVIVEGHSKEHSV 102
L S +++ G PG + L GSS + +D+ F + G T +GH+K SV
Sbjct: 261 LPSSVKYESDGGPGIARIXAFLXGSSEALKDRYDFXKFQVFQWLIGAT---QGHAKNFSV 317
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,113,935
Number of Sequences: 62578
Number of extensions: 189616
Number of successful extensions: 367
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 353
Number of HSP's gapped (non-prelim): 29
length of query: 171
length of database: 14,973,337
effective HSP length: 92
effective length of query: 79
effective length of database: 9,216,161
effective search space: 728076719
effective search space used: 728076719
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)