BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037228
         (171 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P20144|WUN1_SOLTU Wound-induced protein 1 OS=Solanum tuberosum GN=WUN1 PE=2 SV=1
          Length = 105

 Score = 98.6 bits (244), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 58/113 (51%), Positives = 74/113 (65%), Gaps = 10/113 (8%)

Query: 61  MHMLTGSSSSSEDKRCFTFVPLSTVAFGPTVIVEGHSKEHSVSWVHAWTVTDGIITQVRE 120
           M +LTG++    D   F F+  +   FG  V+VEG     S++WVHAWTVTDG+ITQVRE
Sbjct: 1   MQILTGTAKF--DNASFQFLHKTIDVFGSVVLVEGCDPTRSITWVHAWTVTDGVITQVRE 58

Query: 121 YFNTSVTVTRFGDPQLLSSPVAPVTVSSSCQSVWQSKLCD--NNSVPGLVLAL 171
           YFNTS+TVTRFG      S ++ +T +  C SVW+S L +    SVPGLVLAL
Sbjct: 59  YFNTSLTVTRFG-----KSDISSIT-TLHCPSVWESSLPNRVGKSVPGLVLAL 105


>sp|O14035|YEME_SCHPO Uncharacterized permease C29B12.14c OS=Schizosaccharomyces pombe
           (strain 972 / ATCC 24843) GN=SPAC29B12.14c PE=3 SV=2
          Length = 590

 Score = 31.6 bits (70), Expect = 2.9,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 56/136 (41%), Gaps = 37/136 (27%)

Query: 43  LTSDLEWWFHGPPGHQHLMHMLTGSSSSSEDKRCFTFVPLSTVAFGPTVIVEGH------ 96
           L S++  WF   P +Q + H+ T  S            P + +AF    +V+ H      
Sbjct: 202 LISNVAIWF---PVYQ-IRHLFTAKS---------FLAPPAAIAFLIWALVKAHGAGDAI 248

Query: 97  -SKEHSVSWVHAWTVTDGIITQVREYFNTSVT---VTRFGD-------PQLLSSPVA--- 142
            +K    +W H W VT GII+ +  +    V     TRF         PQL++ P+    
Sbjct: 249 HAKTQLSTWNHGWAVTAGIISCLDNFATLIVNNPDFTRFATTPNAPIFPQLITIPMGFGI 308

Query: 143 ----PVTVSSSCQSVW 154
                V V S+ +S++
Sbjct: 309 TTLIGVLVGSASKSIY 324


>sp|Q9JJ26|MEFV_MOUSE Pyrin OS=Mus musculus GN=Mefv PE=2 SV=2
          Length = 767

 Score = 30.4 bits (67), Expect = 5.9,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 6/86 (6%)

Query: 38  TVHRLLTSDLEWWFHGPPGHQHLMHMLTGSSSSSE-DKRCFTFVPLSTVAFGPTVIVEGH 96
           T+HR            PPG +  +H+L   S S E + +CF+ +  S +AF  + + +  
Sbjct: 599 TLHRAKMMSASELLDTPPGVKEKLHLLYQKSKSVEKNMQCFSEMLSSEMAFSASDVAKWE 658

Query: 97  SKEHSVSWVHAWTVT-----DGIITQ 117
            ++ S + V     T     DG  TQ
Sbjct: 659 GRQPSATQVQGLVPTVHLKCDGAHTQ 684


>sp|Q86UQ4|ABCAD_HUMAN ATP-binding cassette sub-family A member 13 OS=Homo sapiens GN=ABCA13
            PE=2 SV=3
          Length = 5058

 Score = 30.4 bits (67), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 25/53 (47%)

Query: 101  SVSWVHAWTVTDGIITQVREYFNTSVTVTRFGDPQLLSSPVAPVTVSSSCQSV 153
            +VSW+  WT     I+Q+ ++     T    G  QLL      V VS SCQ +
Sbjct: 1147 TVSWLQMWTEIWETISQLFKFDMNVFTSLHHGFTQLLDELEDDVKVSKSCQGI 1199


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.130    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,855,787
Number of Sequences: 539616
Number of extensions: 2562507
Number of successful extensions: 5538
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 5532
Number of HSP's gapped (non-prelim): 12
length of query: 171
length of database: 191,569,459
effective HSP length: 109
effective length of query: 62
effective length of database: 132,751,315
effective search space: 8230581530
effective search space used: 8230581530
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)