Query 037229
Match_columns 577
No_of_seqs 369 out of 3045
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 10:03:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037229.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037229hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 5E-66 1.1E-70 562.6 33.9 551 3-570 126-853 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.4E-50 3E-55 465.1 40.3 179 32-212 184-407 (1153)
3 PF00931 NB-ARC: NB-ARC domain 99.9 1.9E-25 4.2E-30 220.7 12.9 176 37-212 1-215 (287)
4 PLN00113 leucine-rich repeat r 99.8 4.2E-18 9.2E-23 196.4 16.3 258 278-563 71-373 (968)
5 PLN00113 leucine-rich repeat r 99.7 1E-17 2.2E-22 193.3 15.5 259 278-568 120-415 (968)
6 PLN03210 Resistant to P. syrin 99.7 3.8E-17 8.3E-22 189.1 18.3 289 244-565 485-844 (1153)
7 KOG0444 Cytoskeletal regulator 99.7 9.5E-20 2.1E-24 182.2 -3.2 271 278-568 57-383 (1255)
8 KOG0444 Cytoskeletal regulator 99.7 1.2E-18 2.6E-23 174.5 -6.1 223 278-531 34-277 (1255)
9 KOG4194 Membrane glycoprotein 99.6 2.1E-17 4.5E-22 164.6 0.8 249 278-556 151-426 (873)
10 KOG4194 Membrane glycoprotein 99.6 1.4E-16 3E-21 158.8 5.3 238 298-540 78-334 (873)
11 KOG0472 Leucine-rich repeat pr 99.6 1.4E-17 3.1E-22 158.8 -10.4 253 270-557 39-308 (565)
12 KOG0617 Ras suppressor protein 99.5 5.3E-17 1.1E-21 137.5 -7.7 157 290-477 25-183 (264)
13 PRK15370 E3 ubiquitin-protein 99.5 1.3E-13 2.8E-18 149.9 12.9 115 278-405 180-294 (754)
14 KOG0472 Leucine-rich repeat pr 99.5 1.7E-16 3.6E-21 151.7 -8.5 230 278-540 70-314 (565)
15 KOG0617 Ras suppressor protein 99.5 7.5E-16 1.6E-20 130.6 -4.1 151 278-447 35-188 (264)
16 PRK15387 E3 ubiquitin-protein 99.5 6.8E-13 1.5E-17 143.5 16.7 225 278-557 224-456 (788)
17 PRK15370 E3 ubiquitin-protein 99.4 2.7E-13 5.8E-18 147.4 9.7 221 277-557 200-426 (754)
18 KOG0618 Serine/threonine phosp 99.4 4.1E-14 9E-19 148.7 -1.2 262 297-569 44-332 (1081)
19 KOG0618 Serine/threonine phosp 99.4 3.4E-14 7.4E-19 149.3 -2.2 241 278-534 221-488 (1081)
20 KOG4658 Apoptotic ATPase [Sign 99.3 2.3E-12 4.9E-17 142.4 9.0 201 287-516 512-731 (889)
21 PRK15387 E3 ubiquitin-protein 99.3 4.7E-11 1E-15 129.4 14.5 228 278-565 203-440 (788)
22 KOG4237 Extracellular matrix p 99.3 5.6E-13 1.2E-17 127.7 -1.4 117 286-405 56-175 (498)
23 KOG0532 Leucine-rich repeat (L 99.0 1.3E-11 2.8E-16 123.7 -3.9 164 281-477 80-244 (722)
24 KOG0532 Leucine-rich repeat (L 99.0 1.9E-11 4.1E-16 122.5 -5.0 206 280-532 54-270 (722)
25 KOG4237 Extracellular matrix p 98.9 4.1E-11 9E-16 115.0 -3.3 126 278-405 69-199 (498)
26 PF14580 LRR_9: Leucine-rich r 98.9 3.8E-10 8.1E-15 100.5 2.5 57 321-379 41-98 (175)
27 cd00116 LRR_RI Leucine-rich re 98.9 1.8E-10 3.8E-15 115.7 0.4 125 278-405 25-176 (319)
28 cd00116 LRR_RI Leucine-rich re 98.9 2.4E-10 5.2E-15 114.7 1.3 233 295-556 20-288 (319)
29 PF14580 LRR_9: Leucine-rich r 98.9 2.5E-09 5.5E-14 95.2 5.7 125 277-405 20-151 (175)
30 COG4886 Leucine-rich repeat (L 98.8 2.8E-09 6.1E-14 110.3 5.7 178 295-516 113-291 (394)
31 KOG3207 Beta-tubulin folding c 98.6 7.6E-09 1.7E-13 101.1 0.4 207 278-514 123-338 (505)
32 COG4886 Leucine-rich repeat (L 98.6 3.6E-08 7.8E-13 102.1 5.3 169 278-478 118-288 (394)
33 KOG1259 Nischarin, modulator o 98.6 8.1E-09 1.7E-13 96.0 -1.3 102 298-405 284-385 (490)
34 KOG1259 Nischarin, modulator o 98.5 1.4E-08 3E-13 94.4 0.1 129 320-478 282-410 (490)
35 KOG3207 Beta-tubulin folding c 98.5 2.7E-08 5.9E-13 97.3 1.1 200 295-530 118-334 (505)
36 PF13855 LRR_8: Leucine rich r 98.5 9E-08 2E-12 69.8 3.4 58 299-357 2-60 (61)
37 PF13855 LRR_8: Leucine rich r 98.4 1.6E-07 3.6E-12 68.5 2.7 56 323-379 2-59 (61)
38 PLN03150 hypothetical protein; 98.3 1.7E-06 3.7E-11 94.2 8.8 80 324-405 420-501 (623)
39 PRK15386 type III secretion pr 98.3 4.1E-06 8.9E-11 83.9 9.8 54 345-404 51-104 (426)
40 PRK15386 type III secretion pr 98.2 4E-06 8.6E-11 84.0 8.8 107 278-405 54-167 (426)
41 PLN03150 hypothetical protein; 98.2 2.8E-06 6.1E-11 92.5 8.3 103 300-405 420-526 (623)
42 PF12799 LRR_4: Leucine Rich r 98.1 3.3E-06 7.1E-11 56.5 3.6 38 323-361 2-39 (44)
43 PF12799 LRR_4: Leucine Rich r 98.1 4E-06 8.7E-11 56.0 3.8 41 346-387 1-41 (44)
44 KOG2120 SCF ubiquitin ligase, 98.1 8.6E-08 1.9E-12 89.3 -5.9 83 322-405 185-271 (419)
45 KOG2120 SCF ubiquitin ligase, 98.1 5.3E-08 1.1E-12 90.6 -7.4 106 299-405 186-297 (419)
46 KOG0531 Protein phosphatase 1, 98.0 9.2E-07 2E-11 91.9 -0.9 106 294-405 91-197 (414)
47 KOG0531 Protein phosphatase 1, 97.8 3E-06 6.5E-11 88.1 -0.8 123 275-404 94-218 (414)
48 KOG1859 Leucine-rich repeat pr 97.8 5.1E-07 1.1E-11 93.8 -6.8 128 296-443 162-290 (1096)
49 KOG3665 ZYG-1-like serine/thre 97.8 1.3E-05 2.7E-10 87.3 3.1 126 278-405 124-261 (699)
50 KOG4341 F-box protein containi 97.8 8.8E-07 1.9E-11 86.5 -5.3 102 278-379 140-252 (483)
51 KOG4579 Leucine-rich repeat (L 97.8 5E-06 1.1E-10 68.9 -0.4 89 298-388 53-141 (177)
52 KOG1909 Ran GTPase-activating 97.7 6E-06 1.3E-10 79.0 -0.3 112 319-442 89-223 (382)
53 KOG1909 Ran GTPase-activating 97.7 2.7E-06 5.9E-11 81.3 -3.2 236 295-557 27-309 (382)
54 PF01637 Arch_ATPase: Archaeal 97.7 0.00012 2.5E-09 69.7 7.9 162 34-198 1-233 (234)
55 PRK00411 cdc6 cell division co 97.6 0.0011 2.3E-08 68.7 15.0 169 32-201 30-257 (394)
56 KOG3665 ZYG-1-like serine/thre 97.6 1.6E-05 3.5E-10 86.4 0.8 104 298-405 122-231 (699)
57 TIGR03015 pepcterm_ATPase puta 97.6 0.0034 7.5E-08 61.1 17.0 105 99-204 123-243 (269)
58 KOG2982 Uncharacterized conser 97.5 1.9E-05 4.1E-10 74.0 -1.0 104 302-406 49-158 (418)
59 KOG4341 F-box protein containi 97.4 5.1E-06 1.1E-10 81.3 -5.3 62 295-356 187-252 (483)
60 KOG1859 Leucine-rich repeat pr 97.4 2.6E-06 5.6E-11 88.7 -8.1 126 322-477 164-289 (1096)
61 KOG4579 Leucine-rich repeat (L 97.3 3.9E-05 8.4E-10 63.7 -0.5 85 278-364 55-141 (177)
62 PRK06893 DNA replication initi 97.2 0.0032 6.9E-08 59.6 11.1 141 54-197 39-201 (229)
63 KOG1644 U2-associated snRNP A' 97.2 0.00052 1.1E-08 61.1 4.6 105 297-405 41-151 (233)
64 KOG1644 U2-associated snRNP A' 97.2 0.00039 8.4E-09 61.9 3.7 80 323-405 43-124 (233)
65 KOG2123 Uncharacterized conser 97.0 4.9E-05 1.1E-09 70.6 -3.2 102 297-402 18-125 (388)
66 TIGR00635 ruvB Holliday juncti 96.9 0.0062 1.3E-07 60.6 10.6 166 32-201 4-203 (305)
67 TIGR02928 orc1/cdc6 family rep 96.8 0.039 8.5E-07 56.4 15.6 161 32-194 15-241 (365)
68 PF05729 NACHT: NACHT domain 96.8 0.0047 1E-07 55.0 7.8 69 99-167 81-163 (166)
69 KOG2982 Uncharacterized conser 96.8 0.00092 2E-08 63.0 2.8 109 295-405 68-184 (418)
70 KOG2739 Leucine-rich acidic nu 96.6 0.0011 2.5E-08 61.5 2.5 106 296-405 41-154 (260)
71 PRK04841 transcriptional regul 96.6 0.024 5.3E-07 65.6 13.7 112 88-205 107-231 (903)
72 KOG2123 Uncharacterized conser 96.6 0.00015 3.3E-09 67.4 -3.5 83 321-407 18-101 (388)
73 PRK13342 recombination factor 96.5 0.025 5.5E-07 58.7 11.9 164 32-199 12-196 (413)
74 PRK00080 ruvB Holliday junctio 96.4 0.017 3.7E-07 58.0 9.2 166 32-201 25-224 (328)
75 KOG1947 Leucine rich repeat pr 96.3 0.00036 7.8E-09 74.2 -3.3 110 296-405 186-306 (482)
76 PF00560 LRR_1: Leucine Rich R 96.1 0.002 4.2E-08 35.8 0.5 18 348-365 2-19 (22)
77 PRK05564 DNA polymerase III su 96.1 0.2 4.4E-06 49.9 15.3 159 31-197 3-188 (313)
78 TIGR01242 26Sp45 26S proteasom 95.8 0.084 1.8E-06 53.9 11.1 158 32-193 122-328 (364)
79 TIGR03420 DnaA_homol_Hda DnaA 95.6 0.13 2.9E-06 48.4 11.3 160 36-199 21-201 (226)
80 PF00560 LRR_1: Leucine Rich R 95.3 0.0067 1.5E-07 33.6 0.7 22 323-345 1-22 (22)
81 PRK00440 rfc replication facto 95.3 0.31 6.7E-06 48.7 13.1 161 32-196 17-200 (319)
82 KOG2739 Leucine-rich acidic nu 95.1 0.016 3.5E-07 54.0 2.9 83 318-405 39-127 (260)
83 PRK08727 hypothetical protein; 95.0 0.35 7.5E-06 45.8 11.9 159 32-194 19-199 (233)
84 COG5238 RNA1 Ran GTPase-activa 95.0 0.0037 8E-08 58.3 -1.7 84 321-405 29-131 (388)
85 PTZ00112 origin recognition co 94.9 0.35 7.6E-06 53.5 12.5 170 32-203 755-986 (1164)
86 PF13173 AAA_14: AAA domain 94.9 0.07 1.5E-06 45.3 6.1 105 54-158 2-126 (128)
87 TIGR02397 dnaX_nterm DNA polym 94.7 0.67 1.5E-05 47.1 13.9 164 32-199 14-218 (355)
88 PF13504 LRR_7: Leucine rich r 94.4 0.024 5.2E-07 29.1 1.3 15 347-361 2-16 (17)
89 PRK07471 DNA polymerase III su 94.2 0.87 1.9E-05 46.2 13.1 161 31-199 18-238 (365)
90 PF13306 LRR_5: Leucine rich r 94.1 0.12 2.6E-06 43.7 5.8 101 295-402 9-111 (129)
91 KOG2227 Pre-initiation complex 94.1 0.93 2E-05 46.2 12.6 136 32-169 150-340 (529)
92 PRK14961 DNA polymerase III su 94.0 1.1 2.4E-05 45.6 13.5 161 32-196 16-217 (363)
93 PF13306 LRR_5: Leucine rich r 93.9 0.17 3.8E-06 42.6 6.5 112 278-397 14-129 (129)
94 TIGR02903 spore_lon_C ATP-depe 93.9 0.81 1.8E-05 50.0 13.0 111 89-202 281-398 (615)
95 PRK12402 replication factor C 93.8 1 2.3E-05 45.3 13.0 161 32-196 15-223 (337)
96 KOG0473 Leucine-rich repeat pr 93.8 0.0022 4.7E-08 58.4 -5.6 84 295-380 39-122 (326)
97 COG1474 CDC6 Cdc6-related prot 93.8 2.5 5.4E-05 42.9 15.4 163 32-200 17-239 (366)
98 COG5238 RNA1 Ran GTPase-activa 93.7 0.018 3.8E-07 53.9 -0.1 40 318-358 88-132 (388)
99 KOG1947 Leucine rich repeat pr 93.5 0.0054 1.2E-07 65.2 -4.5 214 318-560 184-415 (482)
100 PRK08084 DNA replication initi 93.4 0.98 2.1E-05 42.8 11.3 160 33-196 24-206 (235)
101 PRK14963 DNA polymerase III su 93.4 1.1 2.3E-05 47.7 12.5 161 32-196 14-214 (504)
102 PRK13341 recombination factor 93.4 0.85 1.8E-05 50.6 12.1 157 32-192 28-210 (725)
103 PRK09087 hypothetical protein; 93.4 0.9 1.9E-05 42.8 10.8 133 54-197 44-193 (226)
104 PRK07003 DNA polymerase III su 93.4 0.73 1.6E-05 50.5 11.2 165 32-199 16-221 (830)
105 PRK07940 DNA polymerase III su 93.3 1.7 3.6E-05 44.6 13.4 156 32-196 5-210 (394)
106 COG2909 MalT ATP-dependent tra 93.3 1.1 2.4E-05 49.2 12.3 170 26-205 13-239 (894)
107 PLN03025 replication factor C 93.2 0.83 1.8E-05 45.6 10.9 158 32-193 13-194 (319)
108 PF13504 LRR_7: Leucine rich r 93.1 0.058 1.3E-06 27.7 1.3 17 546-563 1-17 (17)
109 PRK03992 proteasome-activating 92.8 1.4 2.9E-05 45.4 12.0 157 32-192 131-336 (389)
110 PRK05642 DNA replication initi 92.8 1.2 2.7E-05 42.1 10.8 139 55-196 46-205 (234)
111 COG3899 Predicted ATPase [Gene 92.6 1.2 2.6E-05 50.6 12.2 113 89-205 142-266 (849)
112 COG2256 MGS1 ATPase related to 92.5 1.2 2.5E-05 44.7 10.4 158 32-192 24-205 (436)
113 KOG0473 Leucine-rich repeat pr 92.5 0.0046 1E-07 56.3 -5.6 92 311-405 31-122 (326)
114 cd00009 AAA The AAA+ (ATPases 92.3 0.71 1.5E-05 39.5 8.1 103 35-138 1-131 (151)
115 PRK14955 DNA polymerase III su 91.7 1.7 3.8E-05 44.8 11.2 161 32-196 16-225 (397)
116 PRK14960 DNA polymerase III su 91.5 2.5 5.5E-05 45.8 12.3 161 32-196 15-216 (702)
117 PRK14970 DNA polymerase III su 91.4 6 0.00013 40.4 14.9 166 32-200 17-211 (367)
118 PRK06645 DNA polymerase III su 91.1 3.8 8.3E-05 43.5 13.1 161 32-195 21-225 (507)
119 TIGR00678 holB DNA polymerase 91.0 8.2 0.00018 35.0 13.9 87 99-194 96-186 (188)
120 PRK14949 DNA polymerase III su 91.0 3 6.5E-05 46.8 12.5 161 32-196 16-217 (944)
121 PRK06305 DNA polymerase III su 90.8 2.7 5.8E-05 44.1 11.7 164 32-199 17-223 (451)
122 PRK14957 DNA polymerase III su 90.8 4.5 9.8E-05 43.3 13.4 166 32-200 16-222 (546)
123 PRK14962 DNA polymerase III su 90.8 2.8 6E-05 44.2 11.7 168 32-203 14-223 (472)
124 PRK08691 DNA polymerase III su 90.2 2.2 4.7E-05 46.6 10.4 161 32-196 16-217 (709)
125 smart00369 LRR_TYP Leucine-ric 90.1 0.24 5.1E-06 28.6 1.9 19 346-364 2-20 (26)
126 smart00370 LRR Leucine-rich re 90.1 0.24 5.1E-06 28.6 1.9 19 346-364 2-20 (26)
127 PHA02544 44 clamp loader, smal 89.9 2.1 4.5E-05 42.7 9.8 134 32-165 21-171 (316)
128 PRK04195 replication factor C 89.8 2.6 5.6E-05 44.8 10.7 160 32-196 14-199 (482)
129 PTZ00202 tuzin; Provisional 89.7 1.9 4E-05 44.3 8.8 130 31-166 261-433 (550)
130 PRK14956 DNA polymerase III su 89.6 4.5 9.8E-05 42.3 11.8 159 32-194 18-217 (484)
131 KOG3864 Uncharacterized conser 89.3 0.047 1E-06 49.0 -2.3 64 463-536 121-190 (221)
132 PRK12323 DNA polymerase III su 88.9 4.3 9.3E-05 44.0 11.3 163 32-198 16-224 (700)
133 PRK14950 DNA polymerase III su 88.5 8 0.00017 42.2 13.6 162 32-197 16-219 (585)
134 PRK14951 DNA polymerase III su 88.2 9.4 0.0002 41.6 13.5 161 32-196 16-222 (618)
135 KOG3864 Uncharacterized conser 88.2 0.11 2.4E-06 46.7 -0.8 37 368-404 150-186 (221)
136 PRK14971 DNA polymerase III su 88.1 7.8 0.00017 42.4 13.1 159 32-194 17-217 (614)
137 PRK14959 DNA polymerase III su 88.0 5.8 0.00013 43.0 11.7 168 32-203 16-225 (624)
138 PRK07133 DNA polymerase III su 87.4 9.5 0.00021 42.2 13.0 163 32-198 18-219 (725)
139 PRK08451 DNA polymerase III su 87.1 17 0.00037 38.8 14.5 163 32-197 14-216 (535)
140 KOG0989 Replication factor C, 87.1 3.5 7.6E-05 39.9 8.4 166 31-200 35-232 (346)
141 PTZ00454 26S protease regulato 87.1 5.6 0.00012 40.9 10.7 158 32-193 145-351 (398)
142 smart00370 LRR Leucine-rich re 86.8 0.56 1.2E-05 26.9 2.0 22 368-390 1-22 (26)
143 smart00369 LRR_TYP Leucine-ric 86.8 0.56 1.2E-05 26.9 2.0 22 368-390 1-22 (26)
144 PRK09111 DNA polymerase III su 86.5 8.5 0.00018 41.9 12.1 164 31-198 23-232 (598)
145 PF14516 AAA_35: AAA-like doma 86.5 29 0.00063 34.8 15.3 133 66-205 85-245 (331)
146 PRK07764 DNA polymerase III su 86.4 8.4 0.00018 43.6 12.3 159 32-194 15-216 (824)
147 PRK05896 DNA polymerase III su 86.2 9.7 0.00021 41.1 12.2 166 32-201 16-223 (605)
148 PRK06647 DNA polymerase III su 85.8 15 0.00032 39.8 13.4 161 32-196 16-217 (563)
149 TIGR02639 ClpA ATP-dependent C 85.2 3.7 8E-05 46.1 9.0 132 32-167 182-358 (731)
150 PRK08903 DnaA regulatory inact 85.2 16 0.00035 34.2 12.2 168 32-203 18-203 (227)
151 TIGR02881 spore_V_K stage V sp 85.1 9 0.00019 36.9 10.6 138 32-169 6-193 (261)
152 PRK09112 DNA polymerase III su 85.0 22 0.00048 35.9 13.6 163 31-199 22-240 (351)
153 PRK14954 DNA polymerase III su 83.6 20 0.00044 39.1 13.4 162 32-197 16-227 (620)
154 PF05673 DUF815: Protein of un 83.5 11 0.00024 35.6 9.8 108 31-140 26-154 (249)
155 TIGR02880 cbbX_cfxQ probable R 82.9 10 0.00022 37.1 9.9 137 33-169 23-210 (284)
156 PRK07994 DNA polymerase III su 82.7 14 0.0003 40.5 11.6 161 31-195 15-216 (647)
157 PRK14952 DNA polymerase III su 81.8 27 0.00058 37.9 13.4 168 32-203 13-224 (584)
158 PRK14953 DNA polymerase III su 81.3 37 0.0008 36.1 14.0 162 32-197 16-218 (486)
159 CHL00095 clpC Clp protease ATP 79.7 4.7 0.0001 45.9 7.2 132 32-166 179-353 (821)
160 PRK05563 DNA polymerase III su 79.5 37 0.0008 36.8 13.6 160 32-195 16-216 (559)
161 KOG2543 Origin recognition com 79.3 7 0.00015 39.1 7.2 134 32-167 6-193 (438)
162 PRK14958 DNA polymerase III su 78.9 21 0.00045 38.2 11.3 161 32-196 16-217 (509)
163 PF05496 RuvB_N: Holliday junc 78.8 27 0.00059 32.6 10.5 169 31-203 23-225 (233)
164 PTZ00361 26 proteosome regulat 78.7 21 0.00046 37.1 11.0 158 32-193 183-389 (438)
165 TIGR01241 FtsH_fam ATP-depende 77.9 38 0.00083 36.1 13.1 158 32-193 55-260 (495)
166 PRK14965 DNA polymerase III su 77.8 18 0.0004 39.3 10.8 164 32-199 16-221 (576)
167 smart00367 LRR_CC Leucine-rich 77.5 1.5 3.3E-05 25.2 1.3 17 545-561 1-17 (26)
168 PRK14969 DNA polymerase III su 77.2 19 0.00041 38.7 10.5 164 32-199 16-221 (527)
169 COG3903 Predicted ATPase [Gene 76.9 1.5 3.2E-05 44.2 1.9 114 89-205 77-195 (414)
170 COG1373 Predicted ATPase (AAA+ 76.3 31 0.00067 35.6 11.5 123 39-164 24-164 (398)
171 PRK14964 DNA polymerase III su 76.2 59 0.0013 34.5 13.5 161 31-195 12-213 (491)
172 PRK14086 dnaA chromosomal repl 76.2 17 0.00037 39.4 9.7 135 55-192 315-481 (617)
173 CHL00181 cbbX CbbX; Provisiona 76.2 42 0.00091 32.8 11.8 138 32-169 23-211 (287)
174 TIGR03345 VI_ClpV1 type VI sec 75.1 23 0.0005 40.5 11.0 134 31-167 186-363 (852)
175 CHL00176 ftsH cell division pr 74.1 49 0.0011 36.5 12.7 158 32-193 183-388 (638)
176 PF13191 AAA_16: AAA ATPase do 74.0 4 8.7E-05 36.6 3.9 32 33-64 1-34 (185)
177 PRK14087 dnaA chromosomal repl 73.8 20 0.00044 37.6 9.5 100 100-200 207-320 (450)
178 PRK07399 DNA polymerase III su 72.0 50 0.0011 32.8 11.3 159 32-197 4-219 (314)
179 smart00364 LRR_BAC Leucine-ric 71.9 2.7 5.8E-05 24.2 1.3 17 347-363 3-19 (26)
180 PRK06620 hypothetical protein; 71.4 9.6 0.00021 35.5 5.8 148 33-193 18-183 (214)
181 PRK12422 chromosomal replicati 70.7 23 0.0005 37.1 9.0 89 100-191 203-305 (445)
182 PF13401 AAA_22: AAA domain; P 69.6 14 0.00031 30.8 6.1 98 35-136 15-125 (131)
183 TIGR00362 DnaA chromosomal rep 69.5 51 0.0011 34.1 11.3 91 102-195 202-306 (405)
184 PRK14948 DNA polymerase III su 69.2 1E+02 0.0022 34.0 13.8 163 31-197 15-220 (620)
185 TIGR00602 rad24 checkpoint pro 68.1 50 0.0011 36.2 11.1 34 31-64 83-120 (637)
186 PRK11034 clpA ATP-dependent Cl 66.3 15 0.00033 41.2 6.9 133 32-167 186-362 (758)
187 PRK00149 dnaA chromosomal repl 65.4 49 0.0011 34.8 10.3 91 101-194 213-317 (450)
188 COG2607 Predicted ATPase (AAA+ 65.1 29 0.00064 32.6 7.3 108 29-137 57-183 (287)
189 TIGR03689 pup_AAA proteasome A 65.1 44 0.00095 35.6 9.7 138 32-169 182-380 (512)
190 TIGR03346 chaperone_ClpB ATP-d 64.3 22 0.00047 40.8 7.9 132 32-167 173-349 (852)
191 smart00365 LRR_SD22 Leucine-ri 63.3 6.1 0.00013 22.8 1.7 15 346-360 2-16 (26)
192 PRK10865 protein disaggregatio 61.7 27 0.00059 40.0 8.0 134 31-167 177-354 (857)
193 PRK08058 DNA polymerase III su 60.1 1.5E+02 0.0033 29.6 12.2 133 32-165 5-180 (329)
194 PF00308 Bac_DnaA: Bacterial d 59.3 15 0.00032 34.4 4.6 159 35-196 12-205 (219)
195 KOG1514 Origin recognition com 57.2 2.7E+02 0.0058 30.8 13.6 169 32-202 396-624 (767)
196 PF10443 RNA12: RNA12 protein; 57.0 2.4E+02 0.0052 29.2 12.8 107 100-210 149-289 (431)
197 PRK08181 transposase; Validate 56.8 9.2 0.0002 37.0 2.8 83 55-137 107-209 (269)
198 PRK06835 DNA replication prote 55.0 15 0.00032 36.8 4.0 82 55-136 184-288 (329)
199 TIGR03345 VI_ClpV1 type VI sec 52.2 39 0.00084 38.7 7.2 44 32-75 566-621 (852)
200 TIGR02639 ClpA ATP-dependent C 52.1 73 0.0016 35.9 9.3 80 32-111 454-565 (731)
201 PF13516 LRR_6: Leucine Rich r 51.7 7.5 0.00016 21.6 0.8 11 369-379 2-12 (24)
202 PRK05707 DNA polymerase III su 50.3 77 0.0017 31.7 8.2 91 101-198 108-202 (328)
203 PRK06526 transposase; Provisio 49.8 45 0.00098 32.0 6.3 12 99-110 159-170 (254)
204 KOG2170 ATPase of the AAA+ sup 49.5 40 0.00087 32.8 5.6 79 33-111 83-190 (344)
205 COG0466 Lon ATP-dependent Lon 49.2 1E+02 0.0022 34.0 9.1 137 32-168 323-509 (782)
206 KOG2228 Origin recognition com 49.2 1.5E+02 0.0032 29.6 9.4 136 32-167 24-219 (408)
207 CHL00195 ycf46 Ycf46; Provisio 48.1 2.6E+02 0.0056 29.8 12.1 158 32-193 228-429 (489)
208 PRK08939 primosomal protein Dn 46.4 38 0.00081 33.5 5.3 100 36-135 135-259 (306)
209 TIGR01243 CDC48 AAA family ATP 45.7 2.6E+02 0.0057 31.6 12.5 158 32-193 453-657 (733)
210 PRK12377 putative replication 44.4 1.2E+02 0.0025 29.0 8.1 58 53-110 100-174 (248)
211 PHA00729 NTP-binding motif con 43.0 89 0.0019 29.3 6.9 111 43-168 7-141 (226)
212 cd00561 CobA_CobO_BtuR ATP:cor 42.9 21 0.00045 31.4 2.5 50 89-138 83-139 (159)
213 PF05621 TniB: Bacterial TniB 42.6 3.4E+02 0.0074 26.7 12.3 128 66-196 112-258 (302)
214 smart00763 AAA_PrkA PrkA AAA d 41.6 47 0.001 33.5 5.1 32 33-64 52-88 (361)
215 smart00368 LRR_RI Leucine rich 40.7 23 0.0005 20.6 1.7 12 347-358 3-14 (28)
216 PRK08116 hypothetical protein; 40.3 25 0.00055 34.0 3.0 35 102-136 181-220 (268)
217 PRK14088 dnaA chromosomal repl 37.8 4.1E+02 0.0088 27.9 11.7 90 100-192 195-298 (440)
218 TIGR01243 CDC48 AAA family ATP 37.0 3.6E+02 0.0078 30.5 11.9 158 32-193 178-381 (733)
219 COG2384 Predicted SAM-dependen 36.9 33 0.00071 31.7 2.9 57 52-108 84-143 (226)
220 PF02463 SMC_N: RecF/RecN/SMC 36.5 13 0.00029 34.5 0.4 44 101-144 160-206 (220)
221 KOG2004 Mitochondrial ATP-depe 36.3 65 0.0014 35.4 5.3 136 32-167 411-596 (906)
222 KOG0730 AAA+-type ATPase [Post 35.2 5.3E+02 0.012 28.3 11.7 151 32-183 434-631 (693)
223 COG0249 MutS Mismatch repair A 34.0 49 0.0011 37.6 4.3 161 36-205 583-794 (843)
224 PRK10865 protein disaggregatio 33.6 2.3E+02 0.005 32.7 9.6 43 32-74 568-622 (857)
225 TIGR00763 lon ATP-dependent pr 33.5 4.1E+02 0.0089 30.3 11.6 45 32-76 320-373 (775)
226 COG3267 ExeA Type II secretory 32.8 4.5E+02 0.0098 25.2 10.2 135 66-200 95-246 (269)
227 KOG2028 ATPase related to the 32.2 5.6E+02 0.012 26.1 10.9 132 32-166 138-293 (554)
228 KOG0991 Replication factor C, 31.7 1.5E+02 0.0033 27.9 6.2 32 32-64 27-58 (333)
229 PRK06921 hypothetical protein; 31.5 33 0.00071 33.2 2.2 23 53-75 116-142 (266)
230 TIGR03346 chaperone_ClpB ATP-d 31.2 1.1E+02 0.0023 35.4 6.5 44 32-75 565-620 (852)
231 KOG0733 Nuclear AAA ATPase (VC 30.1 7.7E+02 0.017 27.1 14.2 79 32-110 190-293 (802)
232 PRK08769 DNA polymerase III su 30.1 2.7E+02 0.0059 27.7 8.4 91 100-199 114-208 (319)
233 PF13177 DNA_pol3_delta2: DNA 29.5 3.2E+02 0.0068 23.9 8.0 102 36-138 1-143 (162)
234 PF01695 IstB_IS21: IstB-like 27.7 25 0.00054 31.6 0.6 12 53-64 46-57 (178)
235 CHL00095 clpC Clp protease ATP 27.4 1.3E+02 0.0028 34.6 6.3 90 32-121 509-635 (821)
236 PF14532 Sigma54_activ_2: Sigm 26.2 40 0.00087 28.6 1.6 100 35-137 1-110 (138)
237 PRK06871 DNA polymerase III su 26.0 4E+02 0.0086 26.6 8.8 90 99-196 107-200 (325)
238 PRK06964 DNA polymerase III su 25.2 3.6E+02 0.0078 27.1 8.3 87 100-197 133-223 (342)
239 PF00004 AAA: ATPase family as 25.2 1.2E+02 0.0027 24.8 4.5 54 57-110 1-69 (132)
240 PRK10733 hflB ATP-dependent me 25.0 7.7E+02 0.017 27.4 11.6 157 32-192 152-356 (644)
241 KOG2035 Replication factor C, 24.9 6.6E+02 0.014 24.6 9.5 92 102-196 130-226 (351)
242 COG1875 NYN ribonuclease and A 24.5 1.7E+02 0.0037 29.6 5.6 39 100-139 352-390 (436)
243 PRK04132 replication factor C 24.5 5.8E+02 0.013 29.3 10.5 112 85-199 609-732 (846)
244 PRK06696 uridine kinase; Valid 23.0 2.4E+02 0.0053 26.2 6.4 29 36-64 2-32 (223)
245 cd05015 SIS_PGI_1 Phosphogluco 22.1 4.4E+02 0.0096 22.9 7.5 25 40-64 6-30 (158)
246 PRK09183 transposase/IS protei 22.1 1.1E+02 0.0025 29.3 4.0 12 99-110 164-175 (259)
247 PLN00020 ribulose bisphosphate 21.9 2.1E+02 0.0046 29.2 5.8 59 52-110 146-223 (413)
248 KOG0734 AAA+-type ATPase conta 21.2 2.8E+02 0.006 29.7 6.6 79 32-110 304-407 (752)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=5e-66 Score=562.63 Aligned_cols=551 Identities=37% Similarity=0.581 Sum_probs=455.7
Q ss_pred HHHHHHHhcCCcceeee-cCCCCccCCCCCCCc--cccHHHHHHHHHHhhcCCCceEEEEEeccc---------------
Q 037229 3 RVLVDLKVEGAFDVVAE-RTPGAAVDGRPSDLT--VGLESTFDQVWSCLVEEEQVGIIGLYGMEG--------------- 64 (577)
Q Consensus 3 ~~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--vGr~~~~~~i~~~L~~~~~~~vv~I~G~gG--------------- 64 (577)
++|.....++.++.++. ..+..-+...|.... ||.|..++++++.|.. ++..++||+||||
T Consensus 126 ~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~VG~e~~~~kl~~~L~~-d~~~iv~i~GMGGvGKTTL~~qi~N~~~ 204 (889)
T KOG4658|consen 126 REVESLGSKGVFEVVGESLDPREKVETRPIQSESDVGLETMLEKLWNRLME-DDVGIVGIYGMGGVGKTTLARQIFNKFD 204 (889)
T ss_pred HHHHHhccccceecccccccchhhcccCCCCccccccHHHHHHHHHHHhcc-CCCCEEEEECCCcccHHHHHHHHhcccc
Confidence 45555555666666653 122222233332233 9999999999999999 5559999999999
Q ss_pred ----------h-----------hHHHHHHHhCCCcchhccCCHHHHHHHHHHhcc-ccEEEEEecCCChhhhcccCCCCC
Q 037229 65 ----------W-----------IQEQIRRKLGLVDDLWARKGLEEKAMNIFGILS-KEFVLCWMMCGSELILTQMGVPVP 122 (577)
Q Consensus 65 ----------w-----------~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~-kr~LlVLDdv~~~~~~~~l~~~~~ 122 (577)
| ++++|+..++..+..+.....++++..|.+.|+ |||+|||||||+..+|+.++.++|
T Consensus 205 ~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p 284 (889)
T KOG4658|consen 205 EVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFP 284 (889)
T ss_pred hhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCC
Confidence 5 999999999886665566666899999999999 999999999999999999999999
Q ss_pred CCCCCcEEEEEeCchhhhhc-CCCCceEecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCchHHHHHHH
Q 037229 123 NPKRMSKVLFTTRFVEVYGH-KEADEMFRMECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLPLVLVTTAR 201 (577)
Q Consensus 123 ~~~~gsrIivTTR~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~ 201 (577)
...+||||++|||++.||.. +++...++++.|+.+|||+||++.||.......+.++++|++++++|+|+|||++++|+
T Consensus 285 ~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~ 364 (889)
T KOG4658|consen 285 SRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGG 364 (889)
T ss_pred CccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHH
Confidence 99899999999999999988 88889999999999999999999999886556666999999999999999999999999
Q ss_pred HHhcCCCcccc---------------------------------------------------------------cccccc
Q 037229 202 AMAYKKTIFGL---------------------------------------------------------------ARGILT 218 (577)
Q Consensus 202 ~L~~~~~~~~W---------------------------------------------------------------a~g~i~ 218 (577)
.|+.+.+.++| ||||+.
T Consensus 365 ~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~ 444 (889)
T KOG4658|consen 365 LLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFID 444 (889)
T ss_pred HhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcC
Confidence 99999999999 999999
Q ss_pred ccCCchhHHHHHHHHHHHhhc----c--C--CCCCcEEehHHHHHHHHHHHhhhhhhccCceeeecC-------------
Q 037229 219 QMIHTSGAHNERYYNIGVLRK----E--E--DGEGSVTLHDVIRDMALWIAYELAEEEENFWFMQEG------------- 277 (577)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~L~~----~--~--~~~~~~~mhdli~d~~~~~~~~~~~~~~~~~~~~~~------------- 277 (577)
+..+...++++|++|+.+|++ . . ++..+|+|||++||||.+++.+-+... ++.++..+
T Consensus 445 ~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~-e~~iv~~~~~~~~~~~~~~~~ 523 (889)
T KOG4658|consen 445 PLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQE-ENQIVSDGVGLSEIPQVKSWN 523 (889)
T ss_pred ccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccc-cceEEECCcCccccccccchh
Confidence 976778999999999999999 1 1 467899999999999999999766655 43444431
Q ss_pred -eeEEEEecCCCCCCcCCCCCCCccEEeCccCC--CCCcchhhcCCCCcccEEEccCCCCCcccchhhhcCcCCCEEecc
Q 037229 278 -TRRVSLKENKIGDLWETPTSPQLLTLFLNINP--LSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLS 354 (577)
Q Consensus 278 -~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~--~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~ 354 (577)
+|+++++++.+..++....+++|++|.+.++. +..++..+|..+++|++|||++|..+.++|.+|++|.|||||+++
T Consensus 524 ~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~ 603 (889)
T KOG4658|consen 524 SVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLS 603 (889)
T ss_pred heeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccccc
Confidence 89999999999999999999999999999996 788999999999999999999998999999999999999999999
Q ss_pred CCCCCcccccccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCccC
Q 037229 355 SSGILELPKELGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHL 434 (577)
Q Consensus 355 ~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 434 (577)
++.++.+|.++++|++|++|++..+..+..+|.. +..|++||+|.+.... .......+.++.+|++|
T Consensus 604 ~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i-~~~L~~Lr~L~l~~s~------------~~~~~~~l~el~~Le~L 670 (889)
T KOG4658|consen 604 DTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGI-LLELQSLRVLRLPRSA------------LSNDKLLLKELENLEHL 670 (889)
T ss_pred CCCccccchHHHHHHhhheeccccccccccccch-hhhcccccEEEeeccc------------cccchhhHHhhhcccch
Confidence 9999999999999999999999999777777653 6679999999998775 12355677888888999
Q ss_pred ceeEEEecCcccccCCCccC-cc-----------cee--eecCCCCCCCcEEEecccCCceEEe----------------
Q 037229 435 NVFSITLKSSYALQKPNSEH-TR-----------SLE--VLPLAEMRQLDKLHIAFCTRLQEFE---------------- 484 (577)
Q Consensus 435 ~~L~l~~~~~~~l~~l~~~~-l~-----------~L~--~~~l~~l~~L~~L~l~~~~~l~~l~---------------- 484 (577)
+.+.+.......++.+.... +. .+. .+++..+.+|++|.|.+|...+...
T Consensus 671 ~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~ 750 (889)
T KOG4658|consen 671 ENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLS 750 (889)
T ss_pred hhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHH
Confidence 88888654431122211110 00 000 3467789999999999998753210
Q ss_pred ----cccCCCCCCCCCccCCCCCcceEeeccCCCcceecCC--------------CcccEE-ecCCcccccccccCCCCC
Q 037229 485 ----IECPGRNLMDLTWLIFAPNFRKIDINQSSHMEEIICI--------------DRLRKV-SGGYKKILKRIYPDVLPL 545 (577)
Q Consensus 485 ----l~~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~~~~~~--------------~~L~~L-~l~~~~~l~~l~~~~~~~ 545 (577)
..|. ..+.+.|....|+|+.|.+..|..++++++. .++..+ .+.+.+.++.+.+..-.+
T Consensus 751 ~~~~~~~~--~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~ 828 (889)
T KOG4658|consen 751 KVSILNCH--MLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSF 828 (889)
T ss_pred HHHhhccc--cccccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCc
Confidence 1255 6777778888999999999999999988765 556666 466667777777777788
Q ss_pred CCcceEeeecCCCCCcCCCCCCccc
Q 037229 546 KNLKGITVSSCPNLKRLPLNSNSDQ 570 (577)
Q Consensus 546 ~~L~~L~i~~c~~L~~lp~~~~~~~ 570 (577)
++|+.+.+..||++.++|..+....
T Consensus 829 ~~l~~~~ve~~p~l~~~P~~~~~~i 853 (889)
T KOG4658|consen 829 LKLEELIVEECPKLGKLPLLSTLTI 853 (889)
T ss_pred cchhheehhcCcccccCccccccce
Confidence 9999999999999999999876543
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.4e-50 Score=465.10 Aligned_cols=179 Identities=16% Similarity=0.156 Sum_probs=144.7
Q ss_pred CCccccHHHHHHHHHHhhcC-CCceEEEEEeccch----hHHHHHHHhCCCcc---------------hhc-----cCC-
Q 037229 32 DLTVGLESTFDQVWSCLVEE-EQVGIIGLYGMEGW----IQEQIRRKLGLVDD---------------LWA-----RKG- 85 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~-~~~~vv~I~G~gGw----~~~~i~~~l~~~~~---------------~~~-----~~~- 85 (577)
+++|||+.+++++.++|..+ ++++|||||||||- +.+.+..++....+ ... ..+
T Consensus 184 ~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~ 263 (1153)
T PLN03210 184 EDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNM 263 (1153)
T ss_pred ccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhcccccccccch
Confidence 68999999999999998765 78999999999992 33333222211000 000 000
Q ss_pred HH------------------HHHHHHHHhcc-ccEEEEEecCCChhhhcccCCCCCCCCCCcEEEEEeCchhhhhcCCCC
Q 037229 86 LE------------------EKAMNIFGILS-KEFVLCWMMCGSELILTQMGVPVPNPKRMSKVLFTTRFVEVYGHKEAD 146 (577)
Q Consensus 86 ~~------------------~~~~~l~~~L~-kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIivTTR~~~v~~~~~~~ 146 (577)
.. .....+++.|+ ||+||||||||+..+|+.+.....+.++|||||||||+++++..++++
T Consensus 264 ~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~ 343 (1153)
T PLN03210 264 KLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGID 343 (1153)
T ss_pred hHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCC
Confidence 00 00145678889 999999999999999999988888888999999999999999888888
Q ss_pred ceEecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCchHHHHHHHHHhcCCCcccc
Q 037229 147 EMFRMECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLPLVLVTTARAMAYKKTIFGL 212 (577)
Q Consensus 147 ~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~~~~~~~~W 212 (577)
++|+++.++.++||+||+++||+.. .++.++.+++++|+++|+|+|||++++|++|++ ++..+|
T Consensus 344 ~~~~v~~l~~~ea~~LF~~~Af~~~-~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~-k~~~~W 407 (1153)
T PLN03210 344 HIYEVCLPSNELALEMFCRSAFKKN-SPPDGFMELASEVALRAGNLPLGLNVLGSYLRG-RDKEDW 407 (1153)
T ss_pred eEEEecCCCHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcC-CCHHHH
Confidence 9999999999999999999999876 455678999999999999999999999999998 578889
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.93 E-value=1.9e-25 Score=220.72 Aligned_cols=176 Identities=30% Similarity=0.452 Sum_probs=141.4
Q ss_pred cHHHHHHHHHHhhcC-CCceEEEEEeccc------------------------h-----------hHHHHHHHhCCCcch
Q 037229 37 LESTFDQVWSCLVEE-EQVGIIGLYGMEG------------------------W-----------IQEQIRRKLGLVDDL 80 (577)
Q Consensus 37 r~~~~~~i~~~L~~~-~~~~vv~I~G~gG------------------------w-----------~~~~i~~~l~~~~~~ 80 (577)
||.++++|.++|... ++.++|+|+|||| | ++++|+.+++.....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 789999999999986 8899999999999 3 889999999877433
Q ss_pred h-ccCCHHHHHHHHHHhcc-ccEEEEEecCCChhhhcccCCCCCCCCCCcEEEEEeCchhhhhcCCC-CceEecCCCCHH
Q 037229 81 W-ARKGLEEKAMNIFGILS-KEFVLCWMMCGSELILTQMGVPVPNPKRMSKVLFTTRFVEVYGHKEA-DEMFRMECLRHE 157 (577)
Q Consensus 81 ~-~~~~~~~~~~~l~~~L~-kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIivTTR~~~v~~~~~~-~~~~~l~~L~~~ 157 (577)
. ...+.+.....+.+.|+ +++||||||||+..+|+.+...++.+..||+||||||+..++..+.. ...|++++|+.+
T Consensus 81 ~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ 160 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEE 160 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HH
T ss_pred cccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 2 56778889999999999 99999999999999999999888888889999999999999877665 679999999999
Q ss_pred HHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCchHHHHHHHHHhcCCCcccc
Q 037229 158 EAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLPLVLVTTARAMAYKKTIFGL 212 (577)
Q Consensus 158 ~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~~~~~~~~W 212 (577)
+|++||++.++.......+.+.+.+++|+++|+|+|||++++|++|+.+.+..+|
T Consensus 161 ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w 215 (287)
T PF00931_consen 161 EALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEW 215 (287)
T ss_dssp HHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999876533456677899999999999999999999999776577888
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.77 E-value=4.2e-18 Score=196.41 Aligned_cols=258 Identities=21% Similarity=0.240 Sum_probs=128.8
Q ss_pred eeEEEEecCCCCCCcC--CCCCCCccEEeCccCCCC-CcchhhcCCCCcccEEEccCCC---------------------
Q 037229 278 TRRVSLKENKIGDLWE--TPTSPQLLTLFLNINPLS-MIGGDLFQFKPCLKVLNLSNSP--------------------- 333 (577)
Q Consensus 278 ~r~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~-~~~~~~~~~l~~L~~L~L~~~~--------------------- 333 (577)
++.+.+.++.+..... ...+++|++|++++|.+. .+|.+++..+++|++|+|++|.
T Consensus 71 v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n 150 (968)
T PLN00113 71 VVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNN 150 (968)
T ss_pred EEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCC
Confidence 4455555444332211 134555555555555533 4444444445555555555540
Q ss_pred CCc-ccchhhhcCcCCCEEeccCCCCC-cccccccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeecCccccc
Q 037229 334 CLE-KLPSRISRLVSLQHLDLSSSGIL-ELPKELGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYM 411 (577)
Q Consensus 334 ~l~-~lp~~i~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~ 411 (577)
.+. .+|..++++++|++|++++|.+. .+|.+++++++|++|++++|.....+|.. ++++++|++|++.+|.
T Consensus 151 ~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~------ 223 (968)
T PLN00113 151 MLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNN------ 223 (968)
T ss_pred cccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCc------
Confidence 333 34445555555555555555443 44555555555555555555322334444 5555555555555544
Q ss_pred ccccCCccCcccccccccCCccCceeEEEecCcccccCCCccCccceeeecCCCCCCCcEEEecccCC------------
Q 037229 412 KADSLPFGGSEFLVEQLCCLKHLNVFSITLKSSYALQKPNSEHTRSLEVLPLAEMRQLDKLHIAFCTR------------ 479 (577)
Q Consensus 412 ~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~l~~~~l~~L~~~~l~~l~~L~~L~l~~~~~------------ 479 (577)
.....+..++++++|+.|+++.+.... .++ ..+..+++|++|+++++..
T Consensus 224 --------l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~p---------~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 284 (968)
T PLN00113 224 --------LSGEIPYEIGGLTSLNHLDLVYNNLTG--PIP---------SSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQ 284 (968)
T ss_pred --------cCCcCChhHhcCCCCCEEECcCceecc--ccC---------hhHhCCCCCCEEECcCCeeeccCchhHhhcc
Confidence 223344556666666666666443221 000 0133344455555444321
Q ss_pred -ceEEecccCCCCCC-CCC-ccCCCCCcceEeeccCCCcceecCC----CcccEEecCCcccccccccCCCCCCCcceEe
Q 037229 480 -LQEFEIECPGRNLM-DLT-WLIFAPNFRKIDINQSSHMEEIICI----DRLRKVSGGYKKILKRIYPDVLPLKNLKGIT 552 (577)
Q Consensus 480 -l~~l~l~~~~~~l~-~l~-~l~~l~~L~~L~l~~~~~~~~~~~~----~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~ 552 (577)
++.+.++.+ .+. .+| +++.+++|+.|++++|.....++.. ++|+.|++++|.-...+|.....+++|+.|+
T Consensus 285 ~L~~L~Ls~n--~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ 362 (968)
T PLN00113 285 KLISLDLSDN--SLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLD 362 (968)
T ss_pred CcCEEECcCC--eeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEE
Confidence 111111111 222 223 5667777888877777654443322 7788888877765556666666678888888
Q ss_pred eecCCCCCcCC
Q 037229 553 VSSCPNLKRLP 563 (577)
Q Consensus 553 i~~c~~L~~lp 563 (577)
+++|.--..+|
T Consensus 363 Ls~n~l~~~~p 373 (968)
T PLN00113 363 LSTNNLTGEIP 373 (968)
T ss_pred CCCCeeEeeCC
Confidence 87664333344
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.75 E-value=1e-17 Score=193.31 Aligned_cols=259 Identities=24% Similarity=0.280 Sum_probs=184.7
Q ss_pred eeEEEEecCCCCCCcCCCCCCCccEEeCccCCCC-CcchhhcCCCCcccEEEccCCCCCc-ccchhhhcCcCCCEEeccC
Q 037229 278 TRRVSLKENKIGDLWETPTSPQLLTLFLNINPLS-MIGGDLFQFKPCLKVLNLSNSPCLE-KLPSRISRLVSLQHLDLSS 355 (577)
Q Consensus 278 ~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~-~~~~~~~~~l~~L~~L~L~~~~~l~-~lp~~i~~l~~L~~L~L~~ 355 (577)
++++.++++.+........+++|++|++++|.+. .+|.. +..+++|++|++++| .+. .+|..++++++|++|++++
T Consensus 120 L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~-~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~L~~ 197 (968)
T PLN00113 120 LRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPND-IGSFSSLKVLDLGGN-VLVGKIPNSLTNLTSLEFLTLAS 197 (968)
T ss_pred CCEEECcCCccccccCccccCCCCEEECcCCcccccCChH-HhcCCCCCEEECccC-cccccCChhhhhCcCCCeeeccC
Confidence 7888888887765444467888999999998865 44544 888999999999999 665 6788899999999999999
Q ss_pred CCCC-cccccccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCccC
Q 037229 356 SGIL-ELPKELGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHL 434 (577)
Q Consensus 356 ~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 434 (577)
|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++.+|. .....+..++++++|
T Consensus 198 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~--------------l~~~~p~~l~~l~~L 262 (968)
T PLN00113 198 NQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNN--------------LTGPIPSSLGNLKNL 262 (968)
T ss_pred CCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCce--------------eccccChhHhCCCCC
Confidence 8876 67888999999999999998544567877 8999999999998886 233456677777888
Q ss_pred ceeEEEecCcccccCCCcc-----Ccccee----------eecCCCCCCCcEEEecccCCceEEecccCCCCCC-CC-Cc
Q 037229 435 NVFSITLKSSYALQKPNSE-----HTRSLE----------VLPLAEMRQLDKLHIAFCTRLQEFEIECPGRNLM-DL-TW 497 (577)
Q Consensus 435 ~~L~l~~~~~~~l~~l~~~-----~l~~L~----------~~~l~~l~~L~~L~l~~~~~l~~l~l~~~~~~l~-~l-~~ 497 (577)
+.|+++.+.... .++.. .++.|. ...+..+++|+.|++.++ .+. .+ .+
T Consensus 263 ~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n-------------~~~~~~~~~ 327 (968)
T PLN00113 263 QYLFLYQNKLSG--PIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSN-------------NFTGKIPVA 327 (968)
T ss_pred CEEECcCCeeec--cCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCC-------------ccCCcCChh
Confidence 888877554321 01110 011111 001233445555555443 222 22 36
Q ss_pred cCCCCCcceEeeccCCCcceecCC----CcccEEecCCcccccccccCCCCCCCcceEeeec-------------CCCCC
Q 037229 498 LIFAPNFRKIDINQSSHMEEIICI----DRLRKVSGGYKKILKRIYPDVLPLKNLKGITVSS-------------CPNLK 560 (577)
Q Consensus 498 l~~l~~L~~L~l~~~~~~~~~~~~----~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~-------------c~~L~ 560 (577)
++.+++|+.|++++|.....++.. ++|+.|+++++.-...++.....+++|+.|++.+ |++|+
T Consensus 328 ~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~ 407 (968)
T PLN00113 328 LTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLR 407 (968)
T ss_pred HhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCC
Confidence 788999999999999866555433 8999999999875556776666789999998875 45666
Q ss_pred cCCCCCCc
Q 037229 561 RLPLNSNS 568 (577)
Q Consensus 561 ~lp~~~~~ 568 (577)
.+.+..+.
T Consensus 408 ~L~L~~n~ 415 (968)
T PLN00113 408 RVRLQDNS 415 (968)
T ss_pred EEECcCCE
Confidence 66665543
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.74 E-value=3.8e-17 Score=189.06 Aligned_cols=289 Identities=17% Similarity=0.259 Sum_probs=190.2
Q ss_pred CCcEEehHHHHHHHHHHHhhhhhhcc-Cceeeec--------------CeeEEEEecCCCCCCcC----CCCCCCccEEe
Q 037229 244 EGSVTLHDVIRDMALWIAYELAEEEE-NFWFMQE--------------GTRRVSLKENKIGDLWE----TPTSPQLLTLF 304 (577)
Q Consensus 244 ~~~~~mhdli~d~~~~~~~~~~~~~~-~~~~~~~--------------~~r~l~l~~~~~~~l~~----~~~~~~Lr~L~ 304 (577)
.+.++|||++|+||+.++++++.+.. +.+.... .++++++....+..+.- +..+++|+.|.
T Consensus 485 ~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~ 564 (1153)
T PLN03210 485 EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLK 564 (1153)
T ss_pred CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEE
Confidence 36799999999999999987653221 2233211 16777776555543222 26788888888
Q ss_pred CccCCC-------CCcchhhcCCCCcccEEEccCCCCCcccchhhhcCcCCCEEeccCCCCCcccccccCCCcCcEeccc
Q 037229 305 LNINPL-------SMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSSSGILELPKELGFLGNLACLNLE 377 (577)
Q Consensus 305 l~~~~~-------~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~ 377 (577)
+..+.. ..+|.++..-..+||+|++.++ .++.+|..+ .+.+|+.|++.++.+..+|.++..+++|+.|+++
T Consensus 565 ~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~-~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls 642 (1153)
T PLN03210 565 FYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKY-PLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLR 642 (1153)
T ss_pred EecccccccccceeecCcchhhcCcccEEEEecCC-CCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECC
Confidence 765431 1355553222356888888888 888888776 5678888888888888888888888888888888
Q ss_pred ccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCccCceeEEEecCcccccCCCccCccc
Q 037229 378 NTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHLNVFSITLKSSYALQKPNSEHTRS 457 (577)
Q Consensus 378 ~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~l~~~~l~~ 457 (577)
+|..+..+|. ++.+++|++|++.+|. .....+..++++++|+.|+++ .|..+..++..
T Consensus 643 ~~~~l~~ip~--ls~l~~Le~L~L~~c~--------------~L~~lp~si~~L~~L~~L~L~--~c~~L~~Lp~~---- 700 (1153)
T PLN03210 643 GSKNLKEIPD--LSMATNLETLKLSDCS--------------SLVELPSSIQYLNKLEDLDMS--RCENLEILPTG---- 700 (1153)
T ss_pred CCCCcCcCCc--cccCCcccEEEecCCC--------------CccccchhhhccCCCCEEeCC--CCCCcCccCCc----
Confidence 8767777776 7788888888888876 234455667777788887776 33334443322
Q ss_pred eeeecCCCCCCCcEEEecccCCceEE----------ecccCCCCCCCCCc------------------------------
Q 037229 458 LEVLPLAEMRQLDKLHIAFCTRLQEF----------EIECPGRNLMDLTW------------------------------ 497 (577)
Q Consensus 458 L~~~~l~~l~~L~~L~l~~~~~l~~l----------~l~~~~~~l~~l~~------------------------------ 497 (577)
+ ++++|+.|++++|..++.+ .+.++ .+..+|.
T Consensus 701 -----i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n--~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~ 772 (1153)
T PLN03210 701 -----I-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDET--AIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPL 772 (1153)
T ss_pred -----C-CCCCCCEEeCCCCCCccccccccCCcCeeecCCC--ccccccccccccccccccccccchhhccccccccchh
Confidence 1 2344444444444333222 11111 2222221
Q ss_pred -cCCCCCcceEeeccCCCcceecCC----CcccEEecCCcccccccccCCCCCCCcceEeeecCCCCCcCCCC
Q 037229 498 -LIFAPNFRKIDINQSSHMEEIICI----DRLRKVSGGYKKILKRIYPDVLPLKNLKGITVSSCPNLKRLPLN 565 (577)
Q Consensus 498 -l~~l~~L~~L~l~~~~~~~~~~~~----~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~~L~~lp~~ 565 (577)
...+++|+.|+|++|..+..++.. ++|+.|+|++|.+++.+|... .+++|++|++++|.+|+.+|..
T Consensus 773 ~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~ 844 (1153)
T PLN03210 773 MTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI 844 (1153)
T ss_pred hhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc
Confidence 112467888888888776666544 888888888888888887655 6888888888888888887754
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.73 E-value=9.5e-20 Score=182.22 Aligned_cols=271 Identities=20% Similarity=0.197 Sum_probs=183.8
Q ss_pred eeEEEEecCCCCCCcCC-CCCCCccEEeCccCCC--CCcchhhcCCCCcccEEEccCCCCCcccchhhhcCcCCCEEecc
Q 037229 278 TRRVSLKENKIGDLWET-PTSPQLLTLFLNINPL--SMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLS 354 (577)
Q Consensus 278 ~r~l~l~~~~~~~l~~~-~~~~~Lr~L~l~~~~~--~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~ 354 (577)
+.|+++..|.+..+... ..++.||++++..|++ ..+|+++ -.+.-|.+||||+| .+.+.|..+.+-+++-+|+|+
T Consensus 57 LEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~di-F~l~dLt~lDLShN-qL~EvP~~LE~AKn~iVLNLS 134 (1255)
T KOG0444|consen 57 LEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDI-FRLKDLTILDLSHN-QLREVPTNLEYAKNSIVLNLS 134 (1255)
T ss_pred hhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchh-cccccceeeecchh-hhhhcchhhhhhcCcEEEEcc
Confidence 67888888777655443 7788999999999884 4688884 46899999999999 999999999999999999999
Q ss_pred CCCCCccccc-ccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeecCccccccc----------ccCCc-cCcc
Q 037229 355 SSGILELPKE-LGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKA----------DSLPF-GGSE 422 (577)
Q Consensus 355 ~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~----------~~~~~-~~~~ 422 (577)
+|+|..+|.+ +-+|..|-.|||++| .+..+|+. +.+|.+|++|.+++|....+++.. .+++. ....
T Consensus 135 ~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ-~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~ 212 (1255)
T KOG0444|consen 135 YNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQ-IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLD 212 (1255)
T ss_pred cCccccCCchHHHhhHhHhhhccccc-hhhhcCHH-HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhh
Confidence 9999999987 568899999999999 88999988 889999999999998732221100 00000 0112
Q ss_pred cccccccCCccCceeEEEecCcccccCCCccCccceeeecCCCCCCCcEEEecccC------------CceEEecccCCC
Q 037229 423 FLVEQLCCLKHLNVFSITLKSSYALQKPNSEHTRSLEVLPLAEMRQLDKLHIAFCT------------RLQEFEIECPGR 490 (577)
Q Consensus 423 ~~~~~l~~L~~L~~L~l~~~~~~~l~~l~~~~l~~L~~~~l~~l~~L~~L~l~~~~------------~l~~l~l~~~~~ 490 (577)
..+..+..|.+|+.++++.+..+.++. .+-++.+|+.|++++.. .++++.++.+
T Consensus 213 N~Ptsld~l~NL~dvDlS~N~Lp~vPe------------cly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrN-- 278 (1255)
T KOG0444|consen 213 NIPTSLDDLHNLRDVDLSENNLPIVPE------------CLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRN-- 278 (1255)
T ss_pred cCCCchhhhhhhhhccccccCCCcchH------------HHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccc--
Confidence 233344444444444444333222211 12345666666666543 2333444444
Q ss_pred CCCCCC-ccCCCCCcceEeeccCCC------------------------cceecCC----CcccEEecCCcccccccccC
Q 037229 491 NLMDLT-WLIFAPNFRKIDINQSSH------------------------MEEIICI----DRLRKVSGGYKKILKRIYPD 541 (577)
Q Consensus 491 ~l~~l~-~l~~l~~L~~L~l~~~~~------------------------~~~~~~~----~~L~~L~l~~~~~l~~l~~~ 541 (577)
+++.+| .+..|+.|+.|++.+|.. ++-++.. ++|+.|.|. |+.|-++|..
T Consensus 279 QLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~-~NrLiTLPea 357 (1255)
T KOG0444|consen 279 QLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLD-HNRLITLPEA 357 (1255)
T ss_pred hhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhccc-ccceeechhh
Confidence 566665 556666666666665542 2222211 788888886 4678888888
Q ss_pred CCCCCCcceEeeecCCCCCcCCCCCCc
Q 037229 542 VLPLKNLKGITVSSCPNLKRLPLNSNS 568 (577)
Q Consensus 542 ~~~~~~L~~L~i~~c~~L~~lp~~~~~ 568 (577)
..-+|.|+.|++...|+|.--| .++.
T Consensus 358 IHlL~~l~vLDlreNpnLVMPP-KP~d 383 (1255)
T KOG0444|consen 358 IHLLPDLKVLDLRENPNLVMPP-KPND 383 (1255)
T ss_pred hhhcCCcceeeccCCcCccCCC-Ccch
Confidence 8889999999999999997443 4433
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.66 E-value=1.2e-18 Score=174.47 Aligned_cols=223 Identities=23% Similarity=0.288 Sum_probs=158.5
Q ss_pred eeEEEEecCCCCCCcCC-CCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCc--ccchhhhcCcCCCEEecc
Q 037229 278 TRRVSLKENKIGDLWET-PTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLE--KLPSRISRLVSLQHLDLS 354 (577)
Q Consensus 278 ~r~l~l~~~~~~~l~~~-~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~--~lp~~i~~l~~L~~L~L~ 354 (577)
++++.+....+..+|.. ..+.+|..|.+.+|.+..+... ++.++.||.+.+..| +++ .+|+.|-.|..|..|+|+
T Consensus 34 ~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGE-Ls~Lp~LRsv~~R~N-~LKnsGiP~diF~l~dLt~lDLS 111 (1255)
T KOG0444|consen 34 MTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGE-LSDLPRLRSVIVRDN-NLKNSGIPTDIFRLKDLTILDLS 111 (1255)
T ss_pred eeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhh-hccchhhHHHhhhcc-ccccCCCCchhcccccceeeecc
Confidence 66777776666666655 6677777777777776666655 677888888888888 776 468888888888888888
Q ss_pred CCCCCcccccccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCccC
Q 037229 355 SSGILELPKELGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHL 434 (577)
Q Consensus 355 ~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 434 (577)
+|++++.|..+..-+++-.|+|++| ++.++|...+.+|+-|-.|++++|. ....+..+..|.+|
T Consensus 112 hNqL~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~Nr---------------Le~LPPQ~RRL~~L 175 (1255)
T KOG0444|consen 112 HNQLREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNNR---------------LEMLPPQIRRLSML 175 (1255)
T ss_pred hhhhhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccch---------------hhhcCHHHHHHhhh
Confidence 8888888888888888888888888 7888887777788888888888886 55677778888888
Q ss_pred ceeEEEecCcccccCCCccCccceeeecCCCCCCCcEEEecc--------------cCCceEEecccCCCCCCCCC-ccC
Q 037229 435 NVFSITLKSSYALQKPNSEHTRSLEVLPLAEMRQLDKLHIAF--------------CTRLQEFEIECPGRNLMDLT-WLI 499 (577)
Q Consensus 435 ~~L~l~~~~~~~l~~l~~~~l~~L~~~~l~~l~~L~~L~l~~--------------~~~l~~l~l~~~~~~l~~l~-~l~ 499 (577)
++|.++.+....++ ++ .++.+++|+.|.+++ ..++.++.++|+ ++..+| .+.
T Consensus 176 qtL~Ls~NPL~hfQ------Lr-----QLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N--~Lp~vPecly 242 (1255)
T KOG0444|consen 176 QTLKLSNNPLNHFQ------LR-----QLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN--NLPIVPECLY 242 (1255)
T ss_pred hhhhcCCChhhHHH------Hh-----cCccchhhhhhhcccccchhhcCCCchhhhhhhhhcccccc--CCCcchHHHh
Confidence 88888877644222 11 123344444444443 234445556677 888777 778
Q ss_pred CCCCcceEeeccCCCcceecCC---CcccEEecCC
Q 037229 500 FAPNFRKIDINQSSHMEEIICI---DRLRKVSGGY 531 (577)
Q Consensus 500 ~l~~L~~L~l~~~~~~~~~~~~---~~L~~L~l~~ 531 (577)
.+++|+.|+|++|...+--.+. .+|+.|+++.
T Consensus 243 ~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSr 277 (1255)
T KOG0444|consen 243 KLRNLRRLNLSGNKITELNMTEGEWENLETLNLSR 277 (1255)
T ss_pred hhhhhheeccCcCceeeeeccHHHHhhhhhhcccc
Confidence 8999999999988754332222 4555555554
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.65 E-value=2.1e-17 Score=164.62 Aligned_cols=249 Identities=19% Similarity=0.192 Sum_probs=146.5
Q ss_pred eeEEEEecCCCCCCcCC--CCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccch-hhhcCcCCCEEecc
Q 037229 278 TRRVSLKENKIGDLWET--PTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPS-RISRLVSLQHLDLS 354 (577)
Q Consensus 278 ~r~l~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~L~ 354 (577)
+|.+.++.|.+..++.. +.-.+++.|++.+|.+..+..+.|.++..|.+|.|+.| .++.+|. .|.+|++|+.|+|.
T Consensus 151 lrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLn 229 (873)
T KOG4194|consen 151 LRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLN 229 (873)
T ss_pred hhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccC-cccccCHHHhhhcchhhhhhcc
Confidence 56666666666665543 44456777777777777776666777777777777777 7777765 44557777777777
Q ss_pred CCCCCcc-cccccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCcc
Q 037229 355 SSGILEL-PKELGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKH 433 (577)
Q Consensus 355 ~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 433 (577)
.|.|+.. -..|..|.+|+.|.+..| .+..+.++++..|.++++|++..|. ...-.-..+-+|+.
T Consensus 230 rN~irive~ltFqgL~Sl~nlklqrN-~I~kL~DG~Fy~l~kme~l~L~~N~--------------l~~vn~g~lfgLt~ 294 (873)
T KOG4194|consen 230 RNRIRIVEGLTFQGLPSLQNLKLQRN-DISKLDDGAFYGLEKMEHLNLETNR--------------LQAVNEGWLFGLTS 294 (873)
T ss_pred ccceeeehhhhhcCchhhhhhhhhhc-CcccccCcceeeecccceeecccch--------------hhhhhcccccccch
Confidence 7776655 334677777777777777 6777777767777777777777776 12222333556666
Q ss_pred CceeEEEecCcccccCCCccCccceeeecCCCCCCCcEEEeccc-------------CCceEEecccCCCCCCCCC--cc
Q 037229 434 LNVFSITLKSSYALQKPNSEHTRSLEVLPLAEMRQLDKLHIAFC-------------TRLQEFEIECPGRNLMDLT--WL 498 (577)
Q Consensus 434 L~~L~l~~~~~~~l~~l~~~~l~~L~~~~l~~l~~L~~L~l~~~-------------~~l~~l~l~~~~~~l~~l~--~l 498 (577)
|+.|+++++.+..+.. .++...++|+.|++++. +.++++.++.+ .+..+. .+
T Consensus 295 L~~L~lS~NaI~rih~-----------d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~N--si~~l~e~af 361 (873)
T KOG4194|consen 295 LEQLDLSYNAIQRIHI-----------DSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHN--SIDHLAEGAF 361 (873)
T ss_pred hhhhccchhhhheeec-----------chhhhcccceeEeccccccccCChhHHHHHHHhhhhccccc--chHHHHhhHH
Confidence 6666666665433221 11222333333333321 12222222222 333332 33
Q ss_pred CCCCCcceEeeccCCCcceecCC-------CcccEEecCCcccccccccCC-CCCCCcceEeeecC
Q 037229 499 IFAPNFRKIDINQSSHMEEIICI-------DRLRKVSGGYKKILKRIYPDV-LPLKNLKGITVSSC 556 (577)
Q Consensus 499 ~~l~~L~~L~l~~~~~~~~~~~~-------~~L~~L~l~~~~~l~~l~~~~-~~~~~L~~L~i~~c 556 (577)
..+++|+.|+|..|..-..+-.. ++|++|.+.+ ++++.++... .+|+.|+.|++.+.
T Consensus 362 ~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 362 VGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDN 426 (873)
T ss_pred HHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCCC
Confidence 45667777777666533222111 7777777766 4466666533 35677777766553
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.64 E-value=1.4e-16 Score=158.82 Aligned_cols=238 Identities=18% Similarity=0.173 Sum_probs=143.4
Q ss_pred CCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchhhhcCcCCCEEeccCCCCCccccc-ccCCCcCcEecc
Q 037229 298 PQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSSSGILELPKE-LGFLGNLACLNL 376 (577)
Q Consensus 298 ~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~l 376 (577)
+..++|++++|.+.++...+|.++++|+.+++..| .++.+|...+...||+.|+|.+|.|.++..+ +..++.|+.|||
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N-~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKN-ELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDL 156 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccc-hhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence 34566778777777777777777888888888877 7777777666667777777777777666543 666777777777
Q ss_pred cccccccccchHHhcCCCCCcEEEeeeecCcccc----------cccccCCccCcccccccccCCccCceeEEEecCccc
Q 037229 377 ENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQY----------MKADSLPFGGSEFLVEQLCCLKHLNVFSITLKSSYA 446 (577)
Q Consensus 377 ~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~ 446 (577)
+.| .+..+|...+..-.++++|++.+|...... +..++..-..+.-.+..+.+|++|+.|++..+.+..
T Consensus 157 SrN-~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iri 235 (873)
T KOG4194|consen 157 SRN-LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRI 235 (873)
T ss_pred hhc-hhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceee
Confidence 777 666666543556667777777776511100 000111101222333445556666666666555443
Q ss_pred ccCCCccCccceeeecCC--CCCCCcEEEecccCCceEEecccCCCCCCCCC--ccCCCCCcceEeeccCCCcceecCC-
Q 037229 447 LQKPNSEHTRSLEVLPLA--EMRQLDKLHIAFCTRLQEFEIECPGRNLMDLT--WLIFAPNFRKIDINQSSHMEEIICI- 521 (577)
Q Consensus 447 l~~l~~~~l~~L~~~~l~--~l~~L~~L~l~~~~~l~~l~l~~~~~~l~~l~--~l~~l~~L~~L~l~~~~~~~~~~~~- 521 (577)
.+.+...++.+|+.+.+. ....|+.=.+.+|.+++.+.++.+ ++..+. |+-+|..|+.|+++.|..-..-+..
T Consensus 236 ve~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N--~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~W 313 (873)
T KOG4194|consen 236 VEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETN--RLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSW 313 (873)
T ss_pred ehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccc--hhhhhhcccccccchhhhhccchhhhheeecchh
Confidence 333322222222222111 122233333445667777777766 777665 8889999999999988643322222
Q ss_pred ---CcccEEecCCccccccccc
Q 037229 522 ---DRLRKVSGGYKKILKRIYP 540 (577)
Q Consensus 522 ---~~L~~L~l~~~~~l~~l~~ 540 (577)
++|+.|+|++ +.+++++.
T Consensus 314 sftqkL~~LdLs~-N~i~~l~~ 334 (873)
T KOG4194|consen 314 SFTQKLKELDLSS-NRITRLDE 334 (873)
T ss_pred hhcccceeEeccc-cccccCCh
Confidence 8999999987 44565554
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.55 E-value=1.4e-17 Score=158.82 Aligned_cols=253 Identities=24% Similarity=0.267 Sum_probs=141.1
Q ss_pred CceeeecCeeEEEEecCCCCCCcCC-CCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchhhhcCcCC
Q 037229 270 NFWFMQEGTRRVSLKENKIGDLWET-PTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSL 348 (577)
Q Consensus 270 ~~~~~~~~~r~l~l~~~~~~~l~~~-~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L 348 (577)
++|....+...+.+.++.+..+... ..+..|.+|.+.+|.+..+|+. +..+..+..|+.+++ ++..+|+.++.+.+|
T Consensus 39 e~wW~qv~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~a-ig~l~~l~~l~vs~n-~ls~lp~~i~s~~~l 116 (565)
T KOG0472|consen 39 ENWWEQVDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAA-IGELEALKSLNVSHN-KLSELPEQIGSLISL 116 (565)
T ss_pred hhhhhhcchhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHH-HHHHHHHHHhhcccc-hHhhccHHHhhhhhh
Confidence 4454444455556666665544332 5666677777777776666666 566666666777777 777777777777777
Q ss_pred CEEeccCCCCCcccccccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccc
Q 037229 349 QHLDLSSSGILELPKELGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQL 428 (577)
Q Consensus 349 ~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 428 (577)
+.|+.+++.+.++|++|+.+..|..|+..+| ++.++|.+ ++++.+|..|.+.++. ....+.+.
T Consensus 117 ~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N-~i~slp~~-~~~~~~l~~l~~~~n~---------------l~~l~~~~ 179 (565)
T KOG0472|consen 117 VKLDCSSNELKELPDSIGRLLDLEDLDATNN-QISSLPED-MVNLSKLSKLDLEGNK---------------LKALPENH 179 (565)
T ss_pred hhhhccccceeecCchHHHHhhhhhhhcccc-ccccCchH-HHHHHHHHHhhccccc---------------hhhCCHHH
Confidence 7777777777777777777777777766666 56666666 6666666666666664 23344444
Q ss_pred cCCccCceeEEEecCcccccCCCccCccceeeecCCCCCCCcEEEec-----------ccCCceEEecccCCCCCCCCC-
Q 037229 429 CCLKHLNVFSITLKSSYALQKPNSEHTRSLEVLPLAEMRQLDKLHIA-----------FCTRLQEFEIECPGRNLMDLT- 496 (577)
Q Consensus 429 ~~L~~L~~L~l~~~~~~~l~~l~~~~l~~L~~~~l~~l~~L~~L~l~-----------~~~~l~~l~l~~~~~~l~~l~- 496 (577)
-+++.|+++++..+....++. . ++.+.+|.-|++. +|+.+.++..+-+ +++.+|
T Consensus 180 i~m~~L~~ld~~~N~L~tlP~---~---------lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N--~i~~lpa 245 (565)
T KOG0472|consen 180 IAMKRLKHLDCNSNLLETLPP---E---------LGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGEN--QIEMLPA 245 (565)
T ss_pred HHHHHHHhcccchhhhhcCCh---h---------hcchhhhHHHHhhhcccccCCCCCccHHHHHHHhccc--HHHhhHH
Confidence 445566665554333222221 1 2222333323222 2333333333222 444444
Q ss_pred -ccCCCCCcceEeeccCCCcceecCC---CcccEEecCCcccccccccCCCCCCCcceEeeecCC
Q 037229 497 -WLIFAPNFRKIDINQSSHMEEIICI---DRLRKVSGGYKKILKRIYPDVLPLKNLKGITVSSCP 557 (577)
Q Consensus 497 -~l~~l~~L~~L~l~~~~~~~~~~~~---~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~ 557 (577)
....+++|..|++.+++.-+.+.+. .+|++|++++ ..+..+|...+++ .|+.|.+.+.|
T Consensus 246 e~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSN-N~is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 246 EHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSN-NDISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred HHhcccccceeeeccccccccCchHHHHhhhhhhhcccC-CccccCCcccccc-eeeehhhcCCc
Confidence 2235666666666665532222222 5566666665 3456666655555 56655555543
No 12
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.53 E-value=5.3e-17 Score=137.52 Aligned_cols=157 Identities=24% Similarity=0.295 Sum_probs=107.1
Q ss_pred CCcCCCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchhhhcCcCCCEEeccCCCCCcccccccCCC
Q 037229 290 DLWETPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSSSGILELPKELGFLG 369 (577)
Q Consensus 290 ~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~ 369 (577)
+++....+.+...|.+++|.+..+|+. +..+.+|++|+++++ .++++|.+++.|+.||.|++.-|++.-+|.+||.++
T Consensus 25 ~~~gLf~~s~ITrLtLSHNKl~~vppn-ia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p 102 (264)
T KOG0617|consen 25 ELPGLFNMSNITRLTLSHNKLTVVPPN-IAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFP 102 (264)
T ss_pred hcccccchhhhhhhhcccCceeecCCc-HHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhhhhcCccccCCCc
Confidence 344445666677777777777777776 667777777777777 777777777777777777777777777777777777
Q ss_pred cCcEecccccccc--cccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCccCceeEEEecCcccc
Q 037229 370 NLACLNLENTSSH--GTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHLNVFSITLKSSYAL 447 (577)
Q Consensus 370 ~L~~L~l~~~~~l--~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l 447 (577)
-|+.||+.+| ++ ..+|.+ +-.|+.|+.|+++.+. -...+.+++.|++|+.|.+..++.-.+
T Consensus 103 ~levldltyn-nl~e~~lpgn-ff~m~tlralyl~dnd---------------fe~lp~dvg~lt~lqil~lrdndll~l 165 (264)
T KOG0617|consen 103 ALEVLDLTYN-NLNENSLPGN-FFYMTTLRALYLGDND---------------FEILPPDVGKLTNLQILSLRDNDLLSL 165 (264)
T ss_pred hhhhhhcccc-ccccccCCcc-hhHHHHHHHHHhcCCC---------------cccCChhhhhhcceeEEeeccCchhhC
Confidence 7777777776 44 346666 5567777777777775 345566777777777777765543333
Q ss_pred cCCCccCccceeeecCCCCCCCcEEEeccc
Q 037229 448 QKPNSEHTRSLEVLPLAEMRQLDKLHIAFC 477 (577)
Q Consensus 448 ~~l~~~~l~~L~~~~l~~l~~L~~L~l~~~ 477 (577)
+. .++.++.|++|+|.+.
T Consensus 166 pk------------eig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 166 PK------------EIGDLTRLRELHIQGN 183 (264)
T ss_pred cH------------HHHHHHHHHHHhcccc
Confidence 22 2455666677766654
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.50 E-value=1.3e-13 Score=149.93 Aligned_cols=115 Identities=22% Similarity=0.290 Sum_probs=81.6
Q ss_pred eeEEEEecCCCCCCcCCCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchhhhcCcCCCEEeccCCC
Q 037229 278 TRRVSLKENKIGDLWETPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSSSG 357 (577)
Q Consensus 278 ~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~ 357 (577)
...+.+.+..+..+|... .++|+.|++.+|.+..+|..++ .+|++|++++| .++.+|..+. .+|+.|+|++|.
T Consensus 180 ~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~N~ 252 (754)
T PRK15370 180 KTELRLKILGLTTIPACI-PEQITTLILDNNELKSLPENLQ---GNIKTLYANSN-QLTSIPATLP--DTIQEMELSINR 252 (754)
T ss_pred ceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhhc---cCCCEEECCCC-ccccCChhhh--ccccEEECcCCc
Confidence 456667776776666532 3567888888888777777643 46788888888 7877776553 468888888888
Q ss_pred CCcccccccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeec
Q 037229 358 ILELPKELGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFY 405 (577)
Q Consensus 358 i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 405 (577)
+..+|..+. .+|+.|++++| .+..+|.. +. ++|+.|++++|.
T Consensus 253 L~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~-l~--~sL~~L~Ls~N~ 294 (754)
T PRK15370 253 ITELPERLP--SALQSLDLFHN-KISCLPEN-LP--EELRYLSVYDNS 294 (754)
T ss_pred cCcCChhHh--CCCCEEECcCC-ccCccccc-cC--CCCcEEECCCCc
Confidence 888877654 47888888877 67777765 43 478888887775
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.49 E-value=1.7e-16 Score=151.66 Aligned_cols=230 Identities=19% Similarity=0.208 Sum_probs=175.8
Q ss_pred eeEEEEecCCCCCCcCC-CCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchhhhcCcCCCEEeccCC
Q 037229 278 TRRVSLKENKIGDLWET-PTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSSS 356 (577)
Q Consensus 278 ~r~l~l~~~~~~~l~~~-~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~ 356 (577)
+..+.++.+....+|.. ..+..+..+.+++|++..+|+. +.++..|+.|+.+++ .+.++|++++.+..|..|+..+|
T Consensus 70 l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~-i~s~~~l~~l~~s~n-~~~el~~~i~~~~~l~dl~~~~N 147 (565)
T KOG0472|consen 70 LTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQ-IGSLISLVKLDCSSN-ELKELPDSIGRLLDLEDLDATNN 147 (565)
T ss_pred eeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHH-Hhhhhhhhhhhcccc-ceeecCchHHHHhhhhhhhcccc
Confidence 56777788887776654 6677888889999998889888 777888999999999 99999999999999999999999
Q ss_pred CCCcccccccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCccCce
Q 037229 357 GILELPKELGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHLNV 436 (577)
Q Consensus 357 ~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~ 436 (577)
++..+|.+++++.+|..|++.++ +++.+|+. .-+++.|++|+...+. ....+.+++.+.+|..
T Consensus 148 ~i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~-~i~m~~L~~ld~~~N~---------------L~tlP~~lg~l~~L~~ 210 (565)
T KOG0472|consen 148 QISSLPEDMVNLSKLSKLDLEGN-KLKALPEN-HIAMKRLKHLDCNSNL---------------LETLPPELGGLESLEL 210 (565)
T ss_pred ccccCchHHHHHHHHHHhhcccc-chhhCCHH-HHHHHHHHhcccchhh---------------hhcCChhhcchhhhHH
Confidence 99999999999999999999999 78888887 4459999999988776 5567888888888888
Q ss_pred eEEEecCcccccCCCccC-cccee----------eecCCCCCCCcEEEecccCCceEEecccCCCCCCCCC-ccCCCCCc
Q 037229 437 FSITLKSSYALQKPNSEH-TRSLE----------VLPLAEMRQLDKLHIAFCTRLQEFEIECPGRNLMDLT-WLIFAPNF 504 (577)
Q Consensus 437 L~l~~~~~~~l~~l~~~~-l~~L~----------~~~l~~l~~L~~L~l~~~~~l~~l~l~~~~~~l~~l~-~l~~l~~L 504 (577)
|++..+++..++.++... +..|. ..-...+++|..|++++. +++..| .+.-+.+|
T Consensus 211 LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN-------------klke~Pde~clLrsL 277 (565)
T KOG0472|consen 211 LYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN-------------KLKEVPDEICLLRSL 277 (565)
T ss_pred HHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc-------------ccccCchHHHHhhhh
Confidence 888877776666554422 11111 111335777888888765 677666 66789999
Q ss_pred ceEeeccCCCcceecCC--CcccEEecCCccccccccc
Q 037229 505 RKIDINQSSHMEEIICI--DRLRKVSGGYKKILKRIYP 540 (577)
Q Consensus 505 ~~L~l~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~ 540 (577)
++|+++++....-++.. -.|+.|-+.+.| ++++..
T Consensus 278 ~rLDlSNN~is~Lp~sLgnlhL~~L~leGNP-lrTiRr 314 (565)
T KOG0472|consen 278 ERLDLSNNDISSLPYSLGNLHLKFLALEGNP-LRTIRR 314 (565)
T ss_pred hhhcccCCccccCCcccccceeeehhhcCCc-hHHHHH
Confidence 99999987643322222 456777777765 555543
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.49 E-value=7.5e-16 Score=130.57 Aligned_cols=151 Identities=21% Similarity=0.246 Sum_probs=137.6
Q ss_pred eeEEEEecCCCCCCcCC-CCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchhhhcCcCCCEEeccCC
Q 037229 278 TRRVSLKENKIGDLWET-PTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSSS 356 (577)
Q Consensus 278 ~r~l~l~~~~~~~l~~~-~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~ 356 (577)
+.++.++.+.+..+|.. ..+.+|++|.+.+|.++++|.+ ++++++||.|++.-+ .+..+|..||.++.|++|||.+|
T Consensus 35 ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmn-rl~~lprgfgs~p~levldltyn 112 (264)
T KOG0617|consen 35 ITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMN-RLNILPRGFGSFPALEVLDLTYN 112 (264)
T ss_pred hhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChh-hhhchhhhheecchh-hhhcCccccCCCchhhhhhcccc
Confidence 78899999999887765 8899999999999999999998 899999999999999 99999999999999999999999
Q ss_pred CCC--cccccccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCccC
Q 037229 357 GIL--ELPKELGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHL 434 (577)
Q Consensus 357 ~i~--~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 434 (577)
++. .+|..|..+..|+.|.++.| ...-+|.. ++++++||.|.+..+. ....+.+++.|+.|
T Consensus 113 nl~e~~lpgnff~m~tlralyl~dn-dfe~lp~d-vg~lt~lqil~lrdnd---------------ll~lpkeig~lt~l 175 (264)
T KOG0617|consen 113 NLNENSLPGNFFYMTTLRALYLGDN-DFEILPPD-VGKLTNLQILSLRDND---------------LLSLPKEIGDLTRL 175 (264)
T ss_pred ccccccCCcchhHHHHHHHHHhcCC-CcccCChh-hhhhcceeEEeeccCc---------------hhhCcHHHHHHHHH
Confidence 775 68999999999999999999 78889998 9999999999999987 66789999999999
Q ss_pred ceeEEEecCcccc
Q 037229 435 NVFSITLKSSYAL 447 (577)
Q Consensus 435 ~~L~l~~~~~~~l 447 (577)
+.|.|.++....+
T Consensus 176 relhiqgnrl~vl 188 (264)
T KOG0617|consen 176 RELHIQGNRLTVL 188 (264)
T ss_pred HHHhcccceeeec
Confidence 9999998765443
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.48 E-value=6.8e-13 Score=143.49 Aligned_cols=225 Identities=19% Similarity=0.181 Sum_probs=115.8
Q ss_pred eeEEEEecCCCCCCcCCCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchhhhcCcCCCEEeccCCC
Q 037229 278 TRRVSLKENKIGDLWETPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSSSG 357 (577)
Q Consensus 278 ~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~ 357 (577)
++.+.+..|.+..+|.. .++|++|++.+|.+..+|.. .++|+.|++++| .+..+|.. +..|+.|++++|+
T Consensus 224 L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l----p~sL~~L~Ls~N-~L~~Lp~l---p~~L~~L~Ls~N~ 293 (788)
T PRK15387 224 ITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL----PPGLLELSIFSN-PLTHLPAL---PSGLCKLWIFGNQ 293 (788)
T ss_pred CCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc----ccccceeeccCC-chhhhhhc---hhhcCEEECcCCc
Confidence 34444444444444421 34444444444444444331 234444444444 44444431 1334445555555
Q ss_pred CCcccccccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCC-ccCce
Q 037229 358 ILELPKELGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCL-KHLNV 436 (577)
Q Consensus 358 i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L-~~L~~ 436 (577)
++.+|.. +++|+.|++++| .+..+|. + ..+|+.|++.+|. +..++.+ .+|+.
T Consensus 294 Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~--l--p~~L~~L~Ls~N~-------------------L~~LP~lp~~Lq~ 346 (788)
T PRK15387 294 LTSLPVL---PPGLQELSVSDN-QLASLPA--L--PSELCKLWAYNNQ-------------------LTSLPTLPSGLQE 346 (788)
T ss_pred ccccccc---ccccceeECCCC-ccccCCC--C--cccccccccccCc-------------------cccccccccccce
Confidence 5555432 244555555555 4444443 1 1234444444443 1222222 36788
Q ss_pred eEEEecCcccccCCCccCccceee-----ecCCC-CCCCcEEEecccCCceEEecccCCCCCCCCCccCCCCCcceEeec
Q 037229 437 FSITLKSSYALQKPNSEHTRSLEV-----LPLAE-MRQLDKLHIAFCTRLQEFEIECPGRNLMDLTWLIFAPNFRKIDIN 510 (577)
Q Consensus 437 L~l~~~~~~~l~~l~~~~l~~L~~-----~~l~~-l~~L~~L~l~~~~~l~~l~l~~~~~~l~~l~~l~~l~~L~~L~l~ 510 (577)
|+++.+....++.++.. +..|.. ..++. ..+|+.|+++++ .+..+|.. .++|+.|+++
T Consensus 347 LdLS~N~Ls~LP~lp~~-L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N-------------~Lt~LP~l--~s~L~~LdLS 410 (788)
T PRK15387 347 LSVSDNQLASLPTLPSE-LYKLWAYNNRLTSLPALPSGLKELIVSGN-------------RLTSLPVL--PSELKELMVS 410 (788)
T ss_pred EecCCCccCCCCCCCcc-cceehhhccccccCcccccccceEEecCC-------------cccCCCCc--ccCCCEEEcc
Confidence 88887766655543322 222210 00110 124455555433 55555532 3678899999
Q ss_pred cCCCcceecCC-CcccEEecCCcccccccccCCCCCCCcceEeeecCC
Q 037229 511 QSSHMEEIICI-DRLRKVSGGYKKILKRIYPDVLPLKNLKGITVSSCP 557 (577)
Q Consensus 511 ~~~~~~~~~~~-~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~ 557 (577)
+|. +..++.. .+|+.|++++ +.++.+|.....+++|+.|++++++
T Consensus 411 ~N~-LssIP~l~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 411 GNR-LTSLPMLPSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred CCc-CCCCCcchhhhhhhhhcc-CcccccChHHhhccCCCeEECCCCC
Confidence 886 4445444 6788888887 4478888777788999999998864
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.44 E-value=2.7e-13 Score=147.42 Aligned_cols=221 Identities=22% Similarity=0.223 Sum_probs=163.7
Q ss_pred CeeEEEEecCCCCCCcCCCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchhhhcCcCCCEEeccCC
Q 037229 277 GTRRVSLKENKIGDLWETPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSSS 356 (577)
Q Consensus 277 ~~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~ 356 (577)
.++.+.+.+|.+..+|... ..+|++|++.+|.+..+|..+ ..+|+.|+|++| .+..+|..+. .+|++|++++|
T Consensus 200 ~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~LtsLP~~l---~~~L~~L~Ls~N-~L~~LP~~l~--s~L~~L~Ls~N 272 (754)
T PRK15370 200 QITTLILDNNELKSLPENL-QGNIKTLYANSNQLTSIPATL---PDTIQEMELSIN-RITELPERLP--SALQSLDLFHN 272 (754)
T ss_pred CCcEEEecCCCCCcCChhh-ccCCCEEECCCCccccCChhh---hccccEEECcCC-ccCcCChhHh--CCCCEEECcCC
Confidence 3889999999999888653 468999999999999998764 347999999999 9999998775 58999999999
Q ss_pred CCCcccccccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCccCce
Q 037229 357 GILELPKELGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHLNV 436 (577)
Q Consensus 357 ~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~ 436 (577)
++..+|..+. .+|++|++++| .++.+|.. +. ++|++|++++|.. ...+..+ .++|+.
T Consensus 273 ~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~-lp--~sL~~L~Ls~N~L---------------t~LP~~l--~~sL~~ 329 (754)
T PRK15370 273 KISCLPENLP--EELRYLSVYDN-SIRTLPAH-LP--SGITHLNVQSNSL---------------TALPETL--PPGLKT 329 (754)
T ss_pred ccCccccccC--CCCcEEECCCC-ccccCccc-ch--hhHHHHHhcCCcc---------------ccCCccc--ccccee
Confidence 9999998765 58999999999 88889875 43 5789999998861 1122222 257888
Q ss_pred eEEEecCcccccCCCccCccceeeecCCCCCCCcEEEecccCCceEEecccCCCCCCCCCccCCCCCcceEeeccCCCcc
Q 037229 437 FSITLKSSYALQKPNSEHTRSLEVLPLAEMRQLDKLHIAFCTRLQEFEIECPGRNLMDLTWLIFAPNFRKIDINQSSHME 516 (577)
Q Consensus 437 L~l~~~~~~~l~~l~~~~l~~L~~~~l~~l~~L~~L~l~~~~~l~~l~l~~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~ 516 (577)
|+++.+....++. . + .++|+.|+++++ ++..+|. ...++|+.|+|++|.. .
T Consensus 330 L~Ls~N~Lt~LP~---~---------l--~~sL~~L~Ls~N-------------~L~~LP~-~lp~~L~~LdLs~N~L-t 380 (754)
T PRK15370 330 LEAGENALTSLPA---S---------L--PPELQVLDVSKN-------------QITVLPE-TLPPTITTLDVSRNAL-T 380 (754)
T ss_pred ccccCCccccCCh---h---------h--cCcccEEECCCC-------------CCCcCCh-hhcCCcCEEECCCCcC-C
Confidence 8888665443321 1 2 267888888876 4444441 1236899999999864 4
Q ss_pred eecCC--CcccEEecCCcccccccccCC----CCCCCcceEeeecCC
Q 037229 517 EIICI--DRLRKVSGGYKKILKRIYPDV----LPLKNLKGITVSSCP 557 (577)
Q Consensus 517 ~~~~~--~~L~~L~l~~~~~l~~l~~~~----~~~~~L~~L~i~~c~ 557 (577)
.++.. ++|+.|+++++ .+..+|... ..+|.+..|.+.+.|
T Consensus 381 ~LP~~l~~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 381 NLPENLPAALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred CCCHhHHHHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 44443 67899999884 466666432 235788888887754
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.38 E-value=4.1e-14 Score=148.71 Aligned_cols=262 Identities=24% Similarity=0.252 Sum_probs=158.1
Q ss_pred CCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchhhhcCcCCCEEeccCCCCCcccccccCCCcCcEecc
Q 037229 297 SPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSSSGILELPKELGFLGNLACLNL 376 (577)
Q Consensus 297 ~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l 376 (577)
.-+|++|++++|.+...|.. +..+.+|+.|+++.+ .+.++|.+++++.+|++|+|.+|.+..+|.++..+++|+.|++
T Consensus 44 ~v~L~~l~lsnn~~~~fp~~-it~l~~L~~ln~s~n-~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~Ldl 121 (1081)
T KOG0618|consen 44 RVKLKSLDLSNNQISSFPIQ-ITLLSHLRQLNLSRN-YIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDL 121 (1081)
T ss_pred eeeeEEeeccccccccCCch-hhhHHHHhhcccchh-hHhhCchhhhhhhcchhheeccchhhcCchhHHhhhccccccc
Confidence 34477777777776666665 666777777777777 7777777777777777777777777777777777777777777
Q ss_pred cccccccccchHHhcCCCCCcEEEeeeecCc---c--cccccccCCccCcccccccccCCccCceeEEEecCcccccCCC
Q 037229 377 ENTSSHGTITRQLRSNFSKPQVLRMFRFYGK---A--QYMKADSLPFGGSEFLVEQLCCLKHLNVFSITLKSSYALQKPN 451 (577)
Q Consensus 377 ~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~---~--~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~l~ 451 (577)
++| ....+|.- +..++.+..+..++|... + ..-+.++..-.....++.++.++++ .|++..+....+.--.
T Consensus 122 S~N-~f~~~Pl~-i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~dls~ 197 (1081)
T KOG0618|consen 122 SFN-HFGPIPLV-IEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVLDLSN 197 (1081)
T ss_pred chh-ccCCCchh-HHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhhhhhhh
Confidence 777 55666654 556666666655555200 0 0000111111123344555555555 4666555433111000
Q ss_pred ccCcccee-------eecCCCCCCCcEEEecccC-----------CceEEecccCCCCCCCCC-ccCCCCCcceEeeccC
Q 037229 452 SEHTRSLE-------VLPLAEMRQLDKLHIAFCT-----------RLQEFEIECPGRNLMDLT-WLIFAPNFRKIDINQS 512 (577)
Q Consensus 452 ~~~l~~L~-------~~~l~~l~~L~~L~l~~~~-----------~l~~l~l~~~~~~l~~l~-~l~~l~~L~~L~l~~~ 512 (577)
...++.+. .+.+ .-++|+.|+...|. .++.+.++.+ +++.+| |++.+++|+.|.+..+
T Consensus 198 ~~~l~~l~c~rn~ls~l~~-~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n--~l~~lp~wi~~~~nle~l~~n~N 274 (1081)
T KOG0618|consen 198 LANLEVLHCERNQLSELEI-SGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHN--NLSNLPEWIGACANLEALNANHN 274 (1081)
T ss_pred ccchhhhhhhhcccceEEe-cCcchheeeeccCcceeeccccccccceeeecchh--hhhcchHHHHhcccceEecccch
Confidence 00011110 0001 12334444444433 2333444444 677777 9999999999999988
Q ss_pred CCcceecC---CCcccEEecCCcccccccccCCCCCCCcceEeeecCCCCCcCCCCCCcc
Q 037229 513 SHMEEIIC---IDRLRKVSGGYKKILKRIYPDVLPLKNLKGITVSSCPNLKRLPLNSNSD 569 (577)
Q Consensus 513 ~~~~~~~~---~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~~L~~lp~~~~~~ 569 (577)
....-+.. ..+|++|.+.+|. ++.++....++.+|++|++... +|..+|..+-+.
T Consensus 275 ~l~~lp~ri~~~~~L~~l~~~~ne-l~yip~~le~~~sL~tLdL~~N-~L~~lp~~~l~v 332 (1081)
T KOG0618|consen 275 RLVALPLRISRITSLVSLSAAYNE-LEYIPPFLEGLKSLRTLDLQSN-NLPSLPDNFLAV 332 (1081)
T ss_pred hHHhhHHHHhhhhhHHHHHhhhhh-hhhCCCcccccceeeeeeehhc-cccccchHHHhh
Confidence 76332222 2889999998864 8999988888999999999774 888888755443
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.37 E-value=3.4e-14 Score=149.31 Aligned_cols=241 Identities=18% Similarity=0.181 Sum_probs=168.2
Q ss_pred eeEEEEecCCCCCCcCCCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchhhhcCcCCCEEeccCCC
Q 037229 278 TRRVSLKENKIGDLWETPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSSSG 357 (577)
Q Consensus 278 ~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~ 357 (577)
.+++....+.+..........+|.+++++.+.+..+| +++..+.+|+.++..++ .+..+|..+....+|++|....|.
T Consensus 221 l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N-~l~~lp~ri~~~~~L~~l~~~~ne 298 (1081)
T KOG0618|consen 221 LTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHN-RLVALPLRISRITSLVSLSAAYNE 298 (1081)
T ss_pred hheeeeccCcceeeccccccccceeeecchhhhhcch-HHHHhcccceEecccch-hHHhhHHHHhhhhhHHHHHhhhhh
Confidence 6677777666664444456678999999999999999 78999999999999999 999999999999999999999999
Q ss_pred CCcccccccCCCcCcEecccccccccccchHHhcCCCC-CcEEEeeeecCcccc----------cccccCCccCcccccc
Q 037229 358 ILELPKELGFLGNLACLNLENTSSHGTITRQLRSNFSK-PQVLRMFRFYGKAQY----------MKADSLPFGGSEFLVE 426 (577)
Q Consensus 358 i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~-L~~L~l~~~~~~~~~----------~~~~~~~~~~~~~~~~ 426 (577)
++.+|+....++.|++|+|..| ++..+|...+..+.. |+.|+.+.+...-.+ ..+.+.+-........
T Consensus 299 l~yip~~le~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p 377 (1081)
T KOG0618|consen 299 LEYIPPFLEGLKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFP 377 (1081)
T ss_pred hhhCCCcccccceeeeeeehhc-cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchh
Confidence 9999999888999999999999 888888864444333 555554444311000 0011111113445666
Q ss_pred cccCCccCceeEEEecCcccccCCCccCccceeeecCCCCCCCcEEEecccC------------CceEEecccCCCCCCC
Q 037229 427 QLCCLKHLNVFSITLKSSYALQKPNSEHTRSLEVLPLAEMRQLDKLHIAFCT------------RLQEFEIECPGRNLMD 494 (577)
Q Consensus 427 ~l~~L~~L~~L~l~~~~~~~l~~l~~~~l~~L~~~~l~~l~~L~~L~l~~~~------------~l~~l~l~~~~~~l~~ 494 (577)
-|.+..+|+.|+++++....++. + .+.++..|+.|+++|.. .++.+....+ .+..
T Consensus 378 ~l~~~~hLKVLhLsyNrL~~fpa---s--------~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN--~l~~ 444 (1081)
T KOG0618|consen 378 VLVNFKHLKVLHLSYNRLNSFPA---S--------KLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSN--QLLS 444 (1081)
T ss_pred hhccccceeeeeecccccccCCH---H--------HHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCC--ceee
Confidence 77888999999999887555443 2 24556677777777642 2222222222 6666
Q ss_pred CCccCCCCCcceEeeccCCCcceecCC----CcccEEecCCccc
Q 037229 495 LTWLIFAPNFRKIDINQSSHMEEIICI----DRLRKVSGGYKKI 534 (577)
Q Consensus 495 l~~l~~l~~L~~L~l~~~~~~~~~~~~----~~L~~L~l~~~~~ 534 (577)
+|-+..++.|+.++++.|..-.-.... |+|++|++++...
T Consensus 445 fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 445 FPELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred chhhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence 677778888888888866533322222 7888888887654
No 20
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.33 E-value=2.3e-12 Score=142.43 Aligned_cols=201 Identities=21% Similarity=0.250 Sum_probs=141.3
Q ss_pred CCCCCcCCCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCC-Ccccch-hhhcCcCCCEEeccCC-CCCcccc
Q 037229 287 KIGDLWETPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPC-LEKLPS-RISRLVSLQHLDLSSS-GILELPK 363 (577)
Q Consensus 287 ~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~-l~~lp~-~i~~l~~L~~L~L~~~-~i~~lp~ 363 (577)
.....|........|.+.+.++.+..++.. ...+.|+.|-+.++.. +..++. .|..++.|++|||++| ++.++|+
T Consensus 512 ~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~--~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~ 589 (889)
T KOG4658|consen 512 GLSEIPQVKSWNSVRRMSLMNNKIEHIAGS--SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS 589 (889)
T ss_pred CccccccccchhheeEEEEeccchhhccCC--CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh
Confidence 334466667778899999999987777764 3455899999998832 666654 4788999999999987 6899999
Q ss_pred cccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCccCceeEEEecC
Q 037229 364 ELGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHLNVFSITLKS 443 (577)
Q Consensus 364 ~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 443 (577)
+|++|-+|++|+++++ .+..+|.+ +++|.+|.+|++..+. .....+..+..|.+||.|.+....
T Consensus 590 ~I~~Li~LryL~L~~t-~I~~LP~~-l~~Lk~L~~Lnl~~~~--------------~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 590 SIGELVHLRYLDLSDT-GISHLPSG-LGNLKKLIYLNLEVTG--------------RLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred HHhhhhhhhcccccCC-CccccchH-HHHHHhhheecccccc--------------ccccccchhhhcccccEEEeeccc
Confidence 9999999999999999 89999999 9999999999999887 122224445569999999998554
Q ss_pred cccccCCCccCccceeeecCCCCCCCcEEEecccCC--ce-------------EEecc-cCCCCCCCCCccCCCCCcceE
Q 037229 444 SYALQKPNSEHTRSLEVLPLAEMRQLDKLHIAFCTR--LQ-------------EFEIE-CPGRNLMDLTWLIFAPNFRKI 507 (577)
Q Consensus 444 ~~~l~~l~~~~l~~L~~~~l~~l~~L~~L~l~~~~~--l~-------------~l~l~-~~~~~l~~l~~l~~l~~L~~L 507 (577)
... ....+. .+..+.+|+.+.+..+.. ++ .+.+. |. ..+....++.+++|+.|
T Consensus 654 ~~~----~~~~l~-----el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~--~~~~~~~~~~l~~L~~L 722 (889)
T KOG4658|consen 654 LSN----DKLLLK-----ELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCS--KRTLISSLGSLGNLEEL 722 (889)
T ss_pred ccc----chhhHH-----hhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccc--cceeecccccccCcceE
Confidence 110 000011 134455555555544432 01 00000 11 22333466789999999
Q ss_pred eeccCCCcc
Q 037229 508 DINQSSHME 516 (577)
Q Consensus 508 ~l~~~~~~~ 516 (577)
.+.+|...+
T Consensus 723 ~i~~~~~~e 731 (889)
T KOG4658|consen 723 SILDCGISE 731 (889)
T ss_pred EEEcCCCch
Confidence 999998754
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.27 E-value=4.7e-11 Score=129.38 Aligned_cols=228 Identities=18% Similarity=0.136 Sum_probs=154.0
Q ss_pred eeEEEEecCCCCCCcCCCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchhhhcCcCCCEEeccCCC
Q 037229 278 TRRVSLKENKIGDLWETPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSSSG 357 (577)
Q Consensus 278 ~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~ 357 (577)
-..+.+..+.+..+|... .++|+.|.+.+|.+..+|.. +++|++|++++| .++.+|.. .++|++|++++|.
T Consensus 203 ~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP~l----p~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~N~ 273 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPAL----PPELRTLEVSGN-QLTSLPVL---PPGLLELSIFSNP 273 (788)
T ss_pred CcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCCCCCCC----CCCCcEEEecCC-ccCcccCc---ccccceeeccCCc
Confidence 456788888888888743 35899999999999888863 588999999999 99999853 4689999999999
Q ss_pred CCcccccccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCccCcee
Q 037229 358 ILELPKELGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHLNVF 437 (577)
Q Consensus 358 i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L 437 (577)
+..+|.. +.+|+.|++++| .++.+|.. +++|++|++++|... ..+. + ..+|+.|
T Consensus 274 L~~Lp~l---p~~L~~L~Ls~N-~Lt~LP~~----p~~L~~LdLS~N~L~---------------~Lp~-l--p~~L~~L 327 (788)
T PRK15387 274 LTHLPAL---PSGLCKLWIFGN-QLTSLPVL----PPGLQELSVSDNQLA---------------SLPA-L--PSELCKL 327 (788)
T ss_pred hhhhhhc---hhhcCEEECcCC-cccccccc----ccccceeECCCCccc---------------cCCC-C--ccccccc
Confidence 9988864 367889999999 78888862 478999999998611 1111 1 2356677
Q ss_pred EEEecCcccccCCCccCccceeeecCCCCCCCcEEEecccC---------CceEEecccCCCCCCCCCccCCCCCcceEe
Q 037229 438 SITLKSSYALQKPNSEHTRSLEVLPLAEMRQLDKLHIAFCT---------RLQEFEIECPGRNLMDLTWLIFAPNFRKID 508 (577)
Q Consensus 438 ~l~~~~~~~l~~l~~~~l~~L~~~~l~~l~~L~~L~l~~~~---------~l~~l~l~~~~~~l~~l~~l~~l~~L~~L~ 508 (577)
+++.+....++.++ .+|+.|+++++. .+..+.+..+ .+..+|.+ .++|+.|+
T Consensus 328 ~Ls~N~L~~LP~lp---------------~~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N--~L~~LP~l--~~~L~~Ld 388 (788)
T PRK15387 328 WAYNNQLTSLPTLP---------------SGLQELSVSDNQLASLPTLPSELYKLWAYNN--RLTSLPAL--PSGLKELI 388 (788)
T ss_pred ccccCccccccccc---------------cccceEecCCCccCCCCCCCcccceehhhcc--ccccCccc--ccccceEE
Confidence 77766655444322 244455554431 1112222222 44444422 35788888
Q ss_pred eccCCCcceecCC-CcccEEecCCcccccccccCCCCCCCcceEeeecCCCCCcCCCC
Q 037229 509 INQSSHMEEIICI-DRLRKVSGGYKKILKRIYPDVLPLKNLKGITVSSCPNLKRLPLN 565 (577)
Q Consensus 509 l~~~~~~~~~~~~-~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~~L~~lp~~ 565 (577)
+++|.. ..++.. ++|+.|+++++. +..+|.. +.+|+.|+++++ +|+++|..
T Consensus 389 Ls~N~L-t~LP~l~s~L~~LdLS~N~-LssIP~l---~~~L~~L~Ls~N-qLt~LP~s 440 (788)
T PRK15387 389 VSGNRL-TSLPVLPSELKELMVSGNR-LTSLPML---PSGLLSLSVYRN-QLTRLPES 440 (788)
T ss_pred ecCCcc-cCCCCcccCCCEEEccCCc-CCCCCcc---hhhhhhhhhccC-cccccChH
Confidence 888763 344444 788899998854 7777643 356777777664 45666643
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.25 E-value=5.6e-13 Score=127.67 Aligned_cols=117 Identities=23% Similarity=0.305 Sum_probs=100.0
Q ss_pred CCCCCCcCCCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCccc-chhhhcCcCCCEEeccC-CCCCcccc
Q 037229 286 NKIGDLWETPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKL-PSRISRLVSLQHLDLSS-SGILELPK 363 (577)
Q Consensus 286 ~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~L~~-~~i~~lp~ 363 (577)
..+..+|... .+....+.+..|.++.+|+..|+.+++||.|||+.| +|+.+ |..|..|..|-.|-+.+ |+|+.+|.
T Consensus 56 ~GL~eVP~~L-P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k 133 (498)
T KOG4237|consen 56 KGLTEVPANL-PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLPK 133 (498)
T ss_pred CCcccCcccC-CCcceEEEeccCCcccCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhhh
Confidence 3444454332 234567889999999999999999999999999999 99988 88899999998888887 89999998
Q ss_pred c-ccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeec
Q 037229 364 E-LGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFY 405 (577)
Q Consensus 364 ~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 405 (577)
. |+.|..|+.|.+.-| .+.-++.+.+..|++|..|.+..+.
T Consensus 134 ~~F~gL~slqrLllNan-~i~Cir~~al~dL~~l~lLslyDn~ 175 (498)
T KOG4237|consen 134 GAFGGLSSLQRLLLNAN-HINCIRQDALRDLPSLSLLSLYDNK 175 (498)
T ss_pred hHhhhHHHHHHHhcChh-hhcchhHHHHHHhhhcchhcccchh
Confidence 7 899999999999988 7788888879999999999999887
No 23
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.02 E-value=1.3e-11 Score=123.67 Aligned_cols=164 Identities=26% Similarity=0.313 Sum_probs=119.5
Q ss_pred EEEecCCCCCCcCC-CCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchhhhcCcCCCEEeccCCCCC
Q 037229 281 VSLKENKIGDLWET-PTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSSSGIL 359 (577)
Q Consensus 281 l~l~~~~~~~l~~~-~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~ 359 (577)
..++.|.+..+|.. ..|..|..+.+..|.+..+|.. +.++..|.+|||+.+ .+..+|..++.|+ |+.|-+++|+++
T Consensus 80 aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~-i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~sNNkl~ 156 (722)
T KOG0532|consen 80 ADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEA-ICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLIVSNNKLT 156 (722)
T ss_pred hhccccccccCchHHHHHHHHHHHHHHhccceecchh-hhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEEEecCccc
Confidence 34444555555543 4556677777777777777776 777888888888888 8888888887776 888888888888
Q ss_pred cccccccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCccCceeEE
Q 037229 360 ELPKELGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHLNVFSI 439 (577)
Q Consensus 360 ~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l 439 (577)
.+|..++.+..|..||.+.| .+..+|.. ++.+.+|+.|.+..+. ....+.++..|+ |..||+
T Consensus 157 ~lp~~ig~~~tl~~ld~s~n-ei~slpsq-l~~l~slr~l~vrRn~---------------l~~lp~El~~Lp-Li~lDf 218 (722)
T KOG0532|consen 157 SLPEEIGLLPTLAHLDVSKN-EIQSLPSQ-LGYLTSLRDLNVRRNH---------------LEDLPEELCSLP-LIRLDF 218 (722)
T ss_pred cCCcccccchhHHHhhhhhh-hhhhchHH-hhhHHHHHHHHHhhhh---------------hhhCCHHHhCCc-eeeeec
Confidence 88888887788888888888 77778877 8888888888887776 445677777665 777888
Q ss_pred EecCcccccCCCccCccceeeecCCCCCCCcEEEeccc
Q 037229 440 TLKSSYALQKPNSEHTRSLEVLPLAEMRQLDKLHIAFC 477 (577)
Q Consensus 440 ~~~~~~~l~~l~~~~l~~L~~~~l~~l~~L~~L~l~~~ 477 (577)
+++.+..++. .+.+|++|++|-+.+.
T Consensus 219 ScNkis~iPv------------~fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 219 SCNKISYLPV------------DFRKMRHLQVLQLENN 244 (722)
T ss_pred ccCceeecch------------hhhhhhhheeeeeccC
Confidence 8776554432 3566777777777654
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.96 E-value=1.9e-11 Score=122.48 Aligned_cols=206 Identities=19% Similarity=0.205 Sum_probs=161.0
Q ss_pred EEEEecCCCCCCcCC---CCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchhhhcCcCCCEEeccCC
Q 037229 280 RVSLKENKIGDLWET---PTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSSS 356 (577)
Q Consensus 280 ~l~l~~~~~~~l~~~---~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~ 356 (577)
++.+++...+.+|.. ..+.--...+++.|.+..+|.. ++.|..|..+.|+.| .+..+|..+++|..|.||+|+.|
T Consensus 54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~-~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~N 131 (722)
T KOG0532|consen 54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEE-ACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSN 131 (722)
T ss_pred ccccccchhhcCCCccccccccchhhhhccccccccCchH-HHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccc
Confidence 455666666655544 3334445678899999999988 788999999999999 99999999999999999999999
Q ss_pred CCCcccccccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCccCce
Q 037229 357 GILELPKELGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHLNV 436 (577)
Q Consensus 357 ~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~ 436 (577)
++..+|..++.|+ |+.|-+++| +++.+|.+ |+.+.+|.+|+.+.|. ....+..++.|.+|+.
T Consensus 132 qlS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~-ig~~~tl~~ld~s~ne---------------i~slpsql~~l~slr~ 193 (722)
T KOG0532|consen 132 QLSHLPDGLCDLP-LKVLIVSNN-KLTSLPEE-IGLLPTLAHLDVSKNE---------------IQSLPSQLGYLTSLRD 193 (722)
T ss_pred hhhcCChhhhcCc-ceeEEEecC-ccccCCcc-cccchhHHHhhhhhhh---------------hhhchHHhhhHHHHHH
Confidence 9999999999877 999999999 89999998 9999999999999997 5678889999999999
Q ss_pred eEEEecCcccccCCCccCccceeeecCCCCCCCcEEEecccCCceEEecccCCCCCCCCC-ccCCCCCcceEeeccCCCc
Q 037229 437 FSITLKSSYALQKPNSEHTRSLEVLPLAEMRQLDKLHIAFCTRLQEFEIECPGRNLMDLT-WLIFAPNFRKIDINQSSHM 515 (577)
Q Consensus 437 L~l~~~~~~~l~~l~~~~l~~L~~~~l~~l~~L~~L~l~~~~~l~~l~l~~~~~~l~~l~-~l~~l~~L~~L~l~~~~~~ 515 (577)
|.+..+....++. . ++.+ .|..|+++ |+ ++..+| .+..+..|++|-|.+|+ +
T Consensus 194 l~vrRn~l~~lp~---E---------l~~L-pLi~lDfS-----------cN--kis~iPv~fr~m~~Lq~l~LenNP-L 246 (722)
T KOG0532|consen 194 LNVRRNHLEDLPE---E---------LCSL-PLIRLDFS-----------CN--KISYLPVDFRKMRHLQVLQLENNP-L 246 (722)
T ss_pred HHHhhhhhhhCCH---H---------HhCC-ceeeeecc-----------cC--ceeecchhhhhhhhheeeeeccCC-C
Confidence 9988665433222 1 2211 24555554 55 777777 67889999999999887 4
Q ss_pred ceecCC-------CcccEEecCCc
Q 037229 516 EEIICI-------DRLRKVSGGYK 532 (577)
Q Consensus 516 ~~~~~~-------~~L~~L~l~~~ 532 (577)
+.++.. .=.|+|++.-|
T Consensus 247 qSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 247 QSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred CCChHHHHhccceeeeeeecchhc
Confidence 444322 44567777766
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.95 E-value=4.1e-11 Score=115.04 Aligned_cols=126 Identities=25% Similarity=0.251 Sum_probs=109.8
Q ss_pred eeEEEEecCCCCCCcCC--CCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccC-CCCCcccch-hhhcCcCCCEEec
Q 037229 278 TRRVSLKENKIGDLWET--PTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSN-SPCLEKLPS-RISRLVSLQHLDL 353 (577)
Q Consensus 278 ~r~l~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~l~~lp~-~i~~l~~L~~L~L 353 (577)
...+.+..|.+..+|.. ..+++||.|+++.|.++.|.++.|..++.|-.|-+.+ + .|+.+|+ .|+.|..|+-|.+
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~N-kI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNN-KITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCC-chhhhhhhHhhhHHHHHHHhc
Confidence 67888999999999986 8899999999999999999999999999988877777 6 9999987 5888999999999
Q ss_pred cCCCCCccccc-ccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeec
Q 037229 354 SSSGILELPKE-LGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFY 405 (577)
Q Consensus 354 ~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 405 (577)
.-|.+..++.. +..|++|..|.+..| .+..++.+.+..+.+++++++..+.
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCc
Confidence 99988877654 888999999999999 7888888668889999998886665
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.93 E-value=3.8e-10 Score=100.45 Aligned_cols=57 Identities=39% Similarity=0.438 Sum_probs=13.2
Q ss_pred CCcccEEEccCCCCCcccchhhhcCcCCCEEeccCCCCCcccccc-cCCCcCcEeccccc
Q 037229 321 KPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSSSGILELPKEL-GFLGNLACLNLENT 379 (577)
Q Consensus 321 l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i-~~L~~L~~L~l~~~ 379 (577)
+.+|++|++++| .++.++ .+..+++|++|++++|.|+.++..+ ..+++|++|++++|
T Consensus 41 l~~L~~L~Ls~N-~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N 98 (175)
T PF14580_consen 41 LDKLEVLDLSNN-QITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNN 98 (175)
T ss_dssp -TT--EEE-TTS---S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS
T ss_pred hcCCCEEECCCC-CCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCC
Confidence 334444444444 444433 2333444444444444444443322 12344444444444
No 27
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.93 E-value=1.8e-10 Score=115.73 Aligned_cols=125 Identities=23% Similarity=0.209 Sum_probs=62.2
Q ss_pred eeEEEEecCCCCC-----CcC-CCCCCCccEEeCccCCCCCcc------hhhcCCCCcccEEEccCCCCCc-ccchhhhc
Q 037229 278 TRRVSLKENKIGD-----LWE-TPTSPQLLTLFLNINPLSMIG------GDLFQFKPCLKVLNLSNSPCLE-KLPSRISR 344 (577)
Q Consensus 278 ~r~l~l~~~~~~~-----l~~-~~~~~~Lr~L~l~~~~~~~~~------~~~~~~l~~L~~L~L~~~~~l~-~lp~~i~~ 344 (577)
++.+.+.++.+.. ++. ....+.++.+.+.++.+...+ ...+..+++|+.|+++++ .+. ..+..+..
T Consensus 25 L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~ 103 (319)
T cd00116 25 LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDN-ALGPDGCGVLES 103 (319)
T ss_pred ccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCC-CCChhHHHHHHH
Confidence 4555555555421 111 134455666666655433111 122445566666666666 444 23334444
Q ss_pred CcC---CCEEeccCCCCC-----cccccccCC-CcCcEeccccccccc-----ccchHHhcCCCCCcEEEeeeec
Q 037229 345 LVS---LQHLDLSSSGIL-----ELPKELGFL-GNLACLNLENTSSHG-----TITRQLRSNFSKPQVLRMFRFY 405 (577)
Q Consensus 345 l~~---L~~L~L~~~~i~-----~lp~~i~~L-~~L~~L~l~~~~~l~-----~lp~~~i~~l~~L~~L~l~~~~ 405 (577)
+.+ |++|++++|.+. .+..++..+ ++|+.|++++| .+. .++.. +..+.+|++|++.+|.
T Consensus 104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~~~~~-~~~~~~L~~L~l~~n~ 176 (319)
T cd00116 104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRN-RLEGASCEALAKA-LRANRDLKELNLANNG 176 (319)
T ss_pred HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCC-cCCchHHHHHHHH-HHhCCCcCEEECcCCC
Confidence 444 666666666554 223334444 56666666666 333 22222 4455566666666654
No 28
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.93 E-value=2.4e-10 Score=114.74 Aligned_cols=233 Identities=19% Similarity=0.146 Sum_probs=127.4
Q ss_pred CCCCCccEEeCccCCCCC-----cchhhcCCCCcccEEEccCCCCCcc-------cchhhhcCcCCCEEeccCCCCC-cc
Q 037229 295 PTSPQLLTLFLNINPLSM-----IGGDLFQFKPCLKVLNLSNSPCLEK-------LPSRISRLVSLQHLDLSSSGIL-EL 361 (577)
Q Consensus 295 ~~~~~Lr~L~l~~~~~~~-----~~~~~~~~l~~L~~L~L~~~~~l~~-------lp~~i~~l~~L~~L~L~~~~i~-~l 361 (577)
..+.+|+.+.+.++.+.. ++.. +...+.|+.|+++++ .+.. ++..+..+++|++|++++|.+. ..
T Consensus 20 ~~l~~L~~l~l~~~~l~~~~~~~i~~~-l~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 97 (319)
T cd00116 20 PKLLCLQVLRLEGNTLGEEAAKALASA-LRPQPSLKELCLSLN-ETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDG 97 (319)
T ss_pred HHHhhccEEeecCCCCcHHHHHHHHHH-HhhCCCceEEecccc-ccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhH
Confidence 345558888888877532 2322 556677888888877 5542 3445667778888888887765 33
Q ss_pred cccccCCCc---CcEecccccccccc-----cchHHhcCC-CCCcEEEeeeecCcccccccccCCccCcccccccccCCc
Q 037229 362 PKELGFLGN---LACLNLENTSSHGT-----ITRQLRSNF-SKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLK 432 (577)
Q Consensus 362 p~~i~~L~~---L~~L~l~~~~~l~~-----lp~~~i~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 432 (577)
+..+..+.+ |++|++++| .+.. +... +..+ ++|+.|++.+|...+. ........+..++
T Consensus 98 ~~~~~~l~~~~~L~~L~ls~~-~~~~~~~~~l~~~-l~~~~~~L~~L~L~~n~l~~~----------~~~~~~~~~~~~~ 165 (319)
T cd00116 98 CGVLESLLRSSSLQELKLNNN-GLGDRGLRLLAKG-LKDLPPALEKLVLGRNRLEGA----------SCEALAKALRANR 165 (319)
T ss_pred HHHHHHHhccCcccEEEeeCC-ccchHHHHHHHHH-HHhCCCCceEEEcCCCcCCch----------HHHHHHHHHHhCC
Confidence 444444444 888888887 3431 2222 4556 7888888888761100 0112334456667
Q ss_pred cCceeEEEecCcccccCCCccCccceeeecCCCCCCCcEEEecccCCceEEecccCCCCCCCCC-ccCCCCCcceEeecc
Q 037229 433 HLNVFSITLKSSYALQKPNSEHTRSLEVLPLAEMRQLDKLHIAFCTRLQEFEIECPGRNLMDLT-WLIFAPNFRKIDINQ 511 (577)
Q Consensus 433 ~L~~L~l~~~~~~~l~~l~~~~l~~L~~~~l~~l~~L~~L~l~~~~~l~~l~l~~~~~~l~~l~-~l~~l~~L~~L~l~~ 511 (577)
+|+.|+++.+.... .. +..+ ...+..+++|+.|++++|..-. . ....+. .+..+++|++|++++
T Consensus 166 ~L~~L~l~~n~l~~-~~-----~~~l-~~~l~~~~~L~~L~L~~n~i~~-~-------~~~~l~~~~~~~~~L~~L~ls~ 230 (319)
T cd00116 166 DLKELNLANNGIGD-AG-----IRAL-AEGLKANCNLEVLDLNNNGLTD-E-------GASALAETLASLKSLEVLNLGD 230 (319)
T ss_pred CcCEEECcCCCCch-HH-----HHHH-HHHHHhCCCCCEEeccCCccCh-H-------HHHHHHHHhcccCCCCEEecCC
Confidence 78888877654331 00 0000 0012334677778777763210 0 111111 344567788888877
Q ss_pred CCCcce----ecC-----CCcccEEecCCcccc----cccccCCCCCCCcceEeeecC
Q 037229 512 SSHMEE----IIC-----IDRLRKVSGGYKKIL----KRIYPDVLPLKNLKGITVSSC 556 (577)
Q Consensus 512 ~~~~~~----~~~-----~~~L~~L~l~~~~~l----~~l~~~~~~~~~L~~L~i~~c 556 (577)
|..... +.. .+.|++|++.+|.-- ..+......+++|++++++++
T Consensus 231 n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N 288 (319)
T cd00116 231 NNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGN 288 (319)
T ss_pred CcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCC
Confidence 753321 000 157778887776421 122222234567777777653
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.88 E-value=2.5e-09 Score=95.16 Aligned_cols=125 Identities=26% Similarity=0.286 Sum_probs=57.6
Q ss_pred CeeEEEEecCCCCCCcCCC-CCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchhh-hcCcCCCEEecc
Q 037229 277 GTRRVSLKENKIGDLWETP-TSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRI-SRLVSLQHLDLS 354 (577)
Q Consensus 277 ~~r~l~l~~~~~~~l~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i-~~l~~L~~L~L~ 354 (577)
+.|.+.+.++.+..+.... .+.+|++|++++|.+..++. +..+++|++|++++| .++.+++.+ ..+++|++|+++
T Consensus 20 ~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~~L~L~ 96 (175)
T PF14580_consen 20 KLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQELYLS 96 (175)
T ss_dssp ----------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS----S-CHHHHHH-TT--EEE-T
T ss_pred ccccccccccccccccchhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCC-CCCccccchHHhCCcCCEEECc
Confidence 4789999999998887664 57899999999999988876 888999999999999 999997665 469999999999
Q ss_pred CCCCCcccc--cccCCCcCcEecccccccccccch---HHhcCCCCCcEEEeeeec
Q 037229 355 SSGILELPK--ELGFLGNLACLNLENTSSHGTITR---QLRSNFSKPQVLRMFRFY 405 (577)
Q Consensus 355 ~~~i~~lp~--~i~~L~~L~~L~l~~~~~l~~lp~---~~i~~l~~L~~L~l~~~~ 405 (577)
+|+|..+-. .+..+++|+.|++.+| .+...+. .++..+++|+.|+-....
T Consensus 97 ~N~I~~l~~l~~L~~l~~L~~L~L~~N-Pv~~~~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 97 NNKISDLNELEPLSSLPKLRVLSLEGN-PVCEKKNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp TS---SCCCCGGGGG-TT--EEE-TT--GGGGSTTHHHHHHHH-TT-SEETTEETT
T ss_pred CCcCCChHHhHHHHcCCCcceeeccCC-cccchhhHHHHHHHHcChhheeCCEEcc
Confidence 998876543 4678899999999999 4544442 357789999999987765
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.84 E-value=2.8e-09 Score=110.30 Aligned_cols=178 Identities=25% Similarity=0.284 Sum_probs=116.5
Q ss_pred CCCCCccEEeCccCCCCCcchhhcCCCC-cccEEEccCCCCCcccchhhhcCcCCCEEeccCCCCCcccccccCCCcCcE
Q 037229 295 PTSPQLLTLFLNINPLSMIGGDLFQFKP-CLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSSSGILELPKELGFLGNLAC 373 (577)
Q Consensus 295 ~~~~~Lr~L~l~~~~~~~~~~~~~~~l~-~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~ 373 (577)
...+.+..|.+.++.+..+++. ...+. +|+.|+++++ .+..+|..++.+++|+.|++++|++..+|...+.+.+|+.
T Consensus 113 ~~~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 113 LELTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNN 190 (394)
T ss_pred hcccceeEEecCCcccccCccc-cccchhhccccccccc-chhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhh
Confidence 4456677777777777777664 44443 7777777777 7777776777777777777777777777776667777777
Q ss_pred ecccccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCccCceeEEEecCcccccCCCcc
Q 037229 374 LNLENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHLNVFSITLKSSYALQKPNSE 453 (577)
Q Consensus 374 L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~l~~~ 453 (577)
|+++++ .+..+|.. +..+..|++|.+.++. ....+..+.++.++..+.+..+....+.
T Consensus 191 L~ls~N-~i~~l~~~-~~~~~~L~~l~~~~N~---------------~~~~~~~~~~~~~l~~l~l~~n~~~~~~----- 248 (394)
T COG4886 191 LDLSGN-KISDLPPE-IELLSALEELDLSNNS---------------IIELLSSLSNLKNLSGLELSNNKLEDLP----- 248 (394)
T ss_pred eeccCC-ccccCchh-hhhhhhhhhhhhcCCc---------------ceecchhhhhcccccccccCCceeeecc-----
Confidence 777777 67777764 4566667777777763 2234445555555555554433222110
Q ss_pred CccceeeecCCCCCCCcEEEecccCCceEEecccCCCCCCCCCccCCCCCcceEeeccCCCcc
Q 037229 454 HTRSLEVLPLAEMRQLDKLHIAFCTRLQEFEIECPGRNLMDLTWLIFAPNFRKIDINQSSHME 516 (577)
Q Consensus 454 ~l~~L~~~~l~~l~~L~~L~l~~~~~l~~l~l~~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~ 516 (577)
..+..++++++|+++++ .+..++.++.+.+|+.|+++++....
T Consensus 249 -------~~~~~l~~l~~L~~s~n-------------~i~~i~~~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 249 -------ESIGNLSNLETLDLSNN-------------QISSISSLGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred -------chhccccccceeccccc-------------cccccccccccCccCEEeccCccccc
Confidence 12455666777776654 56666667778888888888776443
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=7.6e-09 Score=101.07 Aligned_cols=207 Identities=21% Similarity=0.147 Sum_probs=126.6
Q ss_pred eeEEEEecCCCCCCcC---CCCCCCccEEeCccCCCCCcc--hhhcCCCCcccEEEccCCCCCcccchh--hhcCcCCCE
Q 037229 278 TRRVSLKENKIGDLWE---TPTSPQLLTLFLNINPLSMIG--GDLFQFKPCLKVLNLSNSPCLEKLPSR--ISRLVSLQH 350 (577)
Q Consensus 278 ~r~l~l~~~~~~~l~~---~~~~~~Lr~L~l~~~~~~~~~--~~~~~~l~~L~~L~L~~~~~l~~lp~~--i~~l~~L~~ 350 (577)
+|.+++.+..+...+. ...|+++|.|++++|-+.... ..+...+++|+.|+|+.| .+...-++ -..+.+|+.
T Consensus 123 L~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~N-rl~~~~~s~~~~~l~~lK~ 201 (505)
T KOG3207|consen 123 LREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSN-RLSNFISSNTTLLLSHLKQ 201 (505)
T ss_pred hhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccc-cccCCccccchhhhhhhhe
Confidence 7778888877766553 377888999998888644322 234677888899988888 65543221 235778888
Q ss_pred EeccCCCCC--cccccccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccc
Q 037229 351 LDLSSSGIL--ELPKELGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQL 428 (577)
Q Consensus 351 L~L~~~~i~--~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 428 (577)
|.|++|.+. .+-.-.-.+++|+.|++..|..+..-... ...+..|++|+++++.. .........
T Consensus 202 L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~l-------------i~~~~~~~~ 267 (505)
T KOG3207|consen 202 LVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNL-------------IDFDQGYKV 267 (505)
T ss_pred EEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCcc-------------ccccccccc
Confidence 888888876 22222345678888888888422221112 34577888888888871 222333556
Q ss_pred cCCccCceeEEEecCcccccCCCccCccceeeecCCCCCCCcEEEecccCCceEEecccCCCCCCCCCccCCCCCcceEe
Q 037229 429 CCLKHLNVFSITLKSSYALQKPNSEHTRSLEVLPLAEMRQLDKLHIAFCTRLQEFEIECPGRNLMDLTWLIFAPNFRKID 508 (577)
Q Consensus 429 ~~L~~L~~L~l~~~~~~~l~~l~~~~l~~L~~~~l~~l~~L~~L~l~~~~~l~~l~l~~~~~~l~~l~~l~~l~~L~~L~ 508 (577)
+.++.|+.|+++.++++.+...... +++ ....+++|++|++...+-- .+..+.-+..+++|+.|.
T Consensus 268 ~~l~~L~~Lnls~tgi~si~~~d~~---s~~--kt~~f~kL~~L~i~~N~I~----------~w~sl~~l~~l~nlk~l~ 332 (505)
T KOG3207|consen 268 GTLPGLNQLNLSSTGIASIAEPDVE---SLD--KTHTFPKLEYLNISENNIR----------DWRSLNHLRTLENLKHLR 332 (505)
T ss_pred ccccchhhhhccccCcchhcCCCcc---chh--hhcccccceeeecccCccc----------cccccchhhccchhhhhh
Confidence 7788888888877766554432221 111 1234677777777654221 122222334567777777
Q ss_pred eccCCC
Q 037229 509 INQSSH 514 (577)
Q Consensus 509 l~~~~~ 514 (577)
+..+..
T Consensus 333 ~~~n~l 338 (505)
T KOG3207|consen 333 ITLNYL 338 (505)
T ss_pred cccccc
Confidence 665543
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.61 E-value=3.6e-08 Score=102.07 Aligned_cols=169 Identities=27% Similarity=0.296 Sum_probs=139.8
Q ss_pred eeEEEEecCCCCCCcCCCCCC--CccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchhhhcCcCCCEEeccC
Q 037229 278 TRRVSLKENKIGDLWETPTSP--QLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSS 355 (577)
Q Consensus 278 ~r~l~l~~~~~~~l~~~~~~~--~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~ 355 (577)
+..+.+.++.+..++...... +|+.|++.+|.+..+|.. +..++.|+.|++++| .+..+|...+.+..|+.|++++
T Consensus 118 l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L~ls~ 195 (394)
T COG4886 118 LTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNLDLSG 195 (394)
T ss_pred eeEEecCCcccccCccccccchhhcccccccccchhhhhhh-hhccccccccccCCc-hhhhhhhhhhhhhhhhheeccC
Confidence 788899999999998886665 899999999999888744 789999999999999 9999998888999999999999
Q ss_pred CCCCcccccccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCccCc
Q 037229 356 SGILELPKELGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHLN 435 (577)
Q Consensus 356 ~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 435 (577)
+++..+|..++.+..|++|.+.++ .....+.. +.++.++..|.+.++. ....+..++.+.+|+
T Consensus 196 N~i~~l~~~~~~~~~L~~l~~~~N-~~~~~~~~-~~~~~~l~~l~l~~n~---------------~~~~~~~~~~l~~l~ 258 (394)
T COG4886 196 NKISDLPPEIELLSALEELDLSNN-SIIELLSS-LSNLKNLSGLELSNNK---------------LEDLPESIGNLSNLE 258 (394)
T ss_pred CccccCchhhhhhhhhhhhhhcCC-cceecchh-hhhcccccccccCCce---------------eeeccchhccccccc
Confidence 999999998888888999999998 34555555 8899999999977665 333367778888899
Q ss_pred eeEEEecCcccccCCCccCccceeeecCCCCCCCcEEEecccC
Q 037229 436 VFSITLKSSYALQKPNSEHTRSLEVLPLAEMRQLDKLHIAFCT 478 (577)
Q Consensus 436 ~L~l~~~~~~~l~~l~~~~l~~L~~~~l~~l~~L~~L~l~~~~ 478 (577)
.|+++.+....+.. +.++.+++.|++++..
T Consensus 259 ~L~~s~n~i~~i~~-------------~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 259 TLDLSNNQISSISS-------------LGSLTNLRELDLSGNS 288 (394)
T ss_pred eecccccccccccc-------------ccccCccCEEeccCcc
Confidence 99998776554443 4567788888877643
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.55 E-value=8.1e-09 Score=95.99 Aligned_cols=102 Identities=25% Similarity=0.224 Sum_probs=47.2
Q ss_pred CCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchhhhcCcCCCEEeccCCCCCcccccccCCCcCcEeccc
Q 037229 298 PQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSSSGILELPKELGFLGNLACLNLE 377 (577)
Q Consensus 298 ~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~ 377 (577)
..|.++++++|.+..+..+ ..-.+.+|+|++++| .+..+. ++..|++|+.|||++|.+.++...-.+|-|.++|.|.
T Consensus 284 q~LtelDLS~N~I~~iDES-vKL~Pkir~L~lS~N-~i~~v~-nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDES-VKLAPKLRRLILSQN-RIRTVQ-NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhhccccccchhhhhhh-hhhccceeEEecccc-ceeeeh-hhhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence 3444455555544444443 334444555555555 444433 2444445555555555444443333344444455555
Q ss_pred ccccccccchHHhcCCCCCcEEEeeeec
Q 037229 378 NTSSHGTITRQLRSNFSKPQVLRMFRFY 405 (577)
Q Consensus 378 ~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 405 (577)
.| .+.++.. +++|-+|..|++.+|+
T Consensus 361 ~N-~iE~LSG--L~KLYSLvnLDl~~N~ 385 (490)
T KOG1259|consen 361 QN-KIETLSG--LRKLYSLVNLDLSSNQ 385 (490)
T ss_pred hh-hHhhhhh--hHhhhhheeccccccc
Confidence 44 4444433 4445555555554443
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.55 E-value=1.4e-08 Score=94.43 Aligned_cols=129 Identities=16% Similarity=0.123 Sum_probs=101.6
Q ss_pred CCCcccEEEccCCCCCcccchhhhcCcCCCEEeccCCCCCcccccccCCCcCcEecccccccccccchHHhcCCCCCcEE
Q 037229 320 FKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSSSGILELPKELGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVL 399 (577)
Q Consensus 320 ~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L 399 (577)
..+.|..+||++| .|+.+..++.-++.+|.|++++|.|..+-. +..|++|+.|||++| .+.++... -.+|-+.+.|
T Consensus 282 TWq~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N-~Ls~~~Gw-h~KLGNIKtL 357 (490)
T KOG1259|consen 282 TWQELTELDLSGN-LITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGN-LLAECVGW-HLKLGNIKTL 357 (490)
T ss_pred hHhhhhhcccccc-chhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccc-hhHhhhhh-HhhhcCEeee
Confidence 4577999999999 999998899889999999999999988754 889999999999999 67766653 4578899999
Q ss_pred EeeeecCcccccccccCCccCcccccccccCCccCceeEEEecCcccccCCCccCccceeeecCCCCCCCcEEEecccC
Q 037229 400 RMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHLNVFSITLKSSYALQKPNSEHTRSLEVLPLAEMRQLDKLHIAFCT 478 (577)
Q Consensus 400 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~l~~~~l~~L~~~~l~~l~~L~~L~l~~~~ 478 (577)
.+.+|. ...+.+++.|-+|..|+++.+.+..+... -++++++.|+.+.+.+.+
T Consensus 358 ~La~N~----------------iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV----------~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 358 KLAQNK----------------IETLSGLRKLYSLVNLDLSSNQIEELDEV----------NHIGNLPCLETLRLTGNP 410 (490)
T ss_pred ehhhhh----------------HhhhhhhHhhhhheeccccccchhhHHHh----------cccccccHHHHHhhcCCC
Confidence 998875 34566777777888888887776555542 236777777777776653
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=2.7e-08 Score=97.31 Aligned_cols=200 Identities=14% Similarity=0.142 Sum_probs=121.9
Q ss_pred CCCCCccEEeCccCCCCCcch-hhcCCCCcccEEEccCCCCCc---ccchhhhcCcCCCEEeccCCCCCccccc--ccCC
Q 037229 295 PTSPQLLTLFLNINPLSMIGG-DLFQFKPCLKVLNLSNSPCLE---KLPSRISRLVSLQHLDLSSSGILELPKE--LGFL 368 (577)
Q Consensus 295 ~~~~~Lr~L~l~~~~~~~~~~-~~~~~l~~L~~L~L~~~~~l~---~lp~~i~~l~~L~~L~L~~~~i~~lp~~--i~~L 368 (577)
+++++||...+.++.....+. .....|++++.|||+.+ -+. .+-.-+.+|++|+.|+|+.|++....++ -..+
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 567788888888887655543 33667888888888887 444 3344566788888888888876654433 2356
Q ss_pred CcCcEecccccccccccc-hHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCccCceeEEEecCcccc
Q 037229 369 GNLACLNLENTSSHGTIT-RQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHLNVFSITLKSSYAL 447 (577)
Q Consensus 369 ~~L~~L~l~~~~~l~~lp-~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l 447 (577)
.+|+.|.++.| .+..-. ......+++|+.|++..|. ...........+..|+.|+++.+..-.+
T Consensus 197 ~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~--------------~~~~~~~~~~i~~~L~~LdLs~N~li~~ 261 (505)
T KOG3207|consen 197 SHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANE--------------IILIKATSTKILQTLQELDLSNNNLIDF 261 (505)
T ss_pred hhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhccc--------------ccceecchhhhhhHHhhccccCCccccc
Confidence 77888888888 443111 1124567888888888874 1222233344566778888887665444
Q ss_pred cCCCccCccceeeecCCCCCCCcEEEecccCCceEEecccCCCCCCCCC-----ccCCCCCcceEeeccCCC--cceecC
Q 037229 448 QKPNSEHTRSLEVLPLAEMRQLDKLHIAFCTRLQEFEIECPGRNLMDLT-----WLIFAPNFRKIDINQSSH--MEEIIC 520 (577)
Q Consensus 448 ~~l~~~~l~~L~~~~l~~l~~L~~L~l~~~~~l~~l~l~~~~~~l~~l~-----~l~~l~~L~~L~l~~~~~--~~~~~~ 520 (577)
..... ++.++.|..|+++.|..- .+..++ -...+|+|++|++..|+. ...+-.
T Consensus 262 ~~~~~----------~~~l~~L~~Lnls~tgi~----------si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~ 321 (505)
T KOG3207|consen 262 DQGYK----------VGTLPGLNQLNLSSTGIA----------SIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNH 321 (505)
T ss_pred ccccc----------cccccchhhhhccccCcc----------hhcCCCccchhhhcccccceeeecccCccccccccch
Confidence 43222 455777777777766321 111111 123578888888888775 222222
Q ss_pred C---CcccEEecC
Q 037229 521 I---DRLRKVSGG 530 (577)
Q Consensus 521 ~---~~L~~L~l~ 530 (577)
. ++|+.|.+.
T Consensus 322 l~~l~nlk~l~~~ 334 (505)
T KOG3207|consen 322 LRTLENLKHLRIT 334 (505)
T ss_pred hhccchhhhhhcc
Confidence 2 666666543
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.50 E-value=9e-08 Score=69.85 Aligned_cols=58 Identities=40% Similarity=0.487 Sum_probs=29.1
Q ss_pred CccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccch-hhhcCcCCCEEeccCCC
Q 037229 299 QLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPS-RISRLVSLQHLDLSSSG 357 (577)
Q Consensus 299 ~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~L~~~~ 357 (577)
+|++|.+.+|.+..+|.+.|..+++|++|++++| .++.+|+ .|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4455555555555555544555555555555555 5554432 34455555555555443
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.40 E-value=1.6e-07 Score=68.46 Aligned_cols=56 Identities=38% Similarity=0.573 Sum_probs=29.3
Q ss_pred cccEEEccCCCCCcccch-hhhcCcCCCEEeccCCCCCcccc-cccCCCcCcEeccccc
Q 037229 323 CLKVLNLSNSPCLEKLPS-RISRLVSLQHLDLSSSGILELPK-ELGFLGNLACLNLENT 379 (577)
Q Consensus 323 ~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~ 379 (577)
+|++|++++| .+..+|+ .+..+++|++|++++|.++.+|+ .+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 4555555555 5555542 44555555555555555555543 2455555555555554
No 38
>PLN03150 hypothetical protein; Provisional
Probab=98.30 E-value=1.7e-06 Score=94.16 Aligned_cols=80 Identities=29% Similarity=0.442 Sum_probs=39.5
Q ss_pred ccEEEccCCCCCc-ccchhhhcCcCCCEEeccCCCCC-cccccccCCCcCcEecccccccccccchHHhcCCCCCcEEEe
Q 037229 324 LKVLNLSNSPCLE-KLPSRISRLVSLQHLDLSSSGIL-ELPKELGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRM 401 (577)
Q Consensus 324 L~~L~L~~~~~l~-~lp~~i~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l 401 (577)
++.|+|+++ .+. .+|..++.+++|++|+|++|.+. .+|..++.+++|+.|++++|.....+|.. +++|++|++|++
T Consensus 420 v~~L~L~~n-~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~L 497 (623)
T PLN03150 420 IDGLGLDNQ-GLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNL 497 (623)
T ss_pred EEEEECCCC-CccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEEC
Confidence 444555555 443 34445555555555555555544 44445555555555555555222234443 555555555555
Q ss_pred eeec
Q 037229 402 FRFY 405 (577)
Q Consensus 402 ~~~~ 405 (577)
++|.
T Consensus 498 s~N~ 501 (623)
T PLN03150 498 NGNS 501 (623)
T ss_pred cCCc
Confidence 5544
No 39
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.27 E-value=4.1e-06 Score=83.89 Aligned_cols=54 Identities=17% Similarity=0.159 Sum_probs=24.2
Q ss_pred CcCCCEEeccCCCCCcccccccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeee
Q 037229 345 LVSLQHLDLSSSGILELPKELGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRF 404 (577)
Q Consensus 345 l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~ 404 (577)
+.++++|++++|.++.+|. -..+|++|.+++|..++.+|.. + ..+|++|.+.+|
T Consensus 51 ~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~C 104 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHC 104 (426)
T ss_pred hcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCch-h--hhhhhheEccCc
Confidence 3444444444444444441 1223555555554444444432 2 234555555544
No 40
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.23 E-value=4e-06 Score=83.98 Aligned_cols=107 Identities=19% Similarity=0.313 Sum_probs=59.0
Q ss_pred eeEEEEecCCCCCCcCCCCCCCccEEeCccCC-CCCcchhhcCCCCcccEEEccCCCCCcccchhhhcCcCCCEEeccCC
Q 037229 278 TRRVSLKENKIGDLWETPTSPQLLTLFLNINP-LSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSSS 356 (577)
Q Consensus 278 ~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~-~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~ 356 (577)
.++|.++++.+..+|.. ..+|++|.+.+|. +..+|.. + ...|++|++++|+.+..+|++ |+.|++.++
T Consensus 54 l~~L~Is~c~L~sLP~L--P~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L~L~~n 122 (426)
T PRK15386 54 SGRLYIKDCDIESLPVL--PNELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCPEISGLPES------VRSLEIKGS 122 (426)
T ss_pred CCEEEeCCCCCcccCCC--CCCCcEEEccCCCCcccCCch-h--hhhhhheEccCcccccccccc------cceEEeCCC
Confidence 56777777777766632 2357777777655 5555543 2 346777777777666666643 555555554
Q ss_pred C---CCcccccccCCCcCcEecccccccc--cccchHHhcCC-CCCcEEEeeeec
Q 037229 357 G---ILELPKELGFLGNLACLNLENTSSH--GTITRQLRSNF-SKPQVLRMFRFY 405 (577)
Q Consensus 357 ~---i~~lp~~i~~L~~L~~L~l~~~~~l--~~lp~~~i~~l-~~L~~L~l~~~~ 405 (577)
. +..+|++ |+.|.+.++... ..+|. .+ ++|++|.+.+|.
T Consensus 123 ~~~~L~~LPss------Lk~L~I~~~n~~~~~~lp~----~LPsSLk~L~Is~c~ 167 (426)
T PRK15386 123 ATDSIKNVPNG------LTSLSINSYNPENQARIDN----LISPSLKTLSLTGCS 167 (426)
T ss_pred CCcccccCcch------Hhheecccccccccccccc----ccCCcccEEEecCCC
Confidence 3 4455543 344444332111 11111 12 467777777775
No 41
>PLN03150 hypothetical protein; Provisional
Probab=98.22 E-value=2.8e-06 Score=92.45 Aligned_cols=103 Identities=25% Similarity=0.339 Sum_probs=73.3
Q ss_pred ccEEeCccCCCC-CcchhhcCCCCcccEEEccCCCCCc-ccchhhhcCcCCCEEeccCCCCC-cccccccCCCcCcEecc
Q 037229 300 LLTLFLNINPLS-MIGGDLFQFKPCLKVLNLSNSPCLE-KLPSRISRLVSLQHLDLSSSGIL-ELPKELGFLGNLACLNL 376 (577)
Q Consensus 300 Lr~L~l~~~~~~-~~~~~~~~~l~~L~~L~L~~~~~l~-~lp~~i~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~l 376 (577)
++.|.+.++.+. .+|.. +..+++|+.|+|++| .+. .+|..++.+++|++|+|++|.+. .+|..+++|++|++|++
T Consensus 420 v~~L~L~~n~L~g~ip~~-i~~L~~L~~L~Ls~N-~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPND-ISKLRHLQSINLSGN-SIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEECCCCCccccCCHH-HhCCCCCCEEECCCC-cccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 667777777755 34444 777888888888888 665 66777888888888888888776 67777888888888888
Q ss_pred cccccccccchHHhcC-CCCCcEEEeeeec
Q 037229 377 ENTSSHGTITRQLRSN-FSKPQVLRMFRFY 405 (577)
Q Consensus 377 ~~~~~l~~lp~~~i~~-l~~L~~L~l~~~~ 405 (577)
++|.....+|.. ++. +.++..+++.+|.
T Consensus 498 s~N~l~g~iP~~-l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 498 NGNSLSGRVPAA-LGGRLLHRASFNFTDNA 526 (623)
T ss_pred cCCcccccCChH-HhhccccCceEEecCCc
Confidence 887544567765 544 3456666666654
No 42
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.10 E-value=3.3e-06 Score=56.47 Aligned_cols=38 Identities=37% Similarity=0.576 Sum_probs=19.4
Q ss_pred cccEEEccCCCCCcccchhhhcCcCCCEEeccCCCCCcc
Q 037229 323 CLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSSSGILEL 361 (577)
Q Consensus 323 ~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~l 361 (577)
+|++|+++++ .++.+|+.+++|++|++|++++|.++.+
T Consensus 2 ~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNN-QITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCC-CCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 4555555555 5555554455555555555555555444
No 43
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.09 E-value=4e-06 Score=56.04 Aligned_cols=41 Identities=44% Similarity=0.582 Sum_probs=32.7
Q ss_pred cCCCEEeccCCCCCcccccccCCCcCcEecccccccccccch
Q 037229 346 VSLQHLDLSSSGILELPKELGFLGNLACLNLENTSSHGTITR 387 (577)
Q Consensus 346 ~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~ 387 (577)
++|++|++++|+|+.+|..+++|++|++|++++| .+.++|.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCcC
Confidence 4788889988888888888888999999999888 6777765
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=8.6e-08 Score=89.29 Aligned_cols=83 Identities=25% Similarity=0.247 Sum_probs=60.2
Q ss_pred CcccEEEccCCCCCc--ccchhhhcCcCCCEEeccCCCCC-cccccccCCCcCcEecccccccccccch-HHhcCCCCCc
Q 037229 322 PCLKVLNLSNSPCLE--KLPSRISRLVSLQHLDLSSSGIL-ELPKELGFLGNLACLNLENTSSHGTITR-QLRSNFSKPQ 397 (577)
Q Consensus 322 ~~L~~L~L~~~~~l~--~lp~~i~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~-~~i~~l~~L~ 397 (577)
..|++|||+.. .++ .+-.-+..+.+|+.|.|.+..+. .+-..|.+=.+|+.|+++.|..+++... -++.+++.|.
T Consensus 185 sRlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 185 SRLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhhHHhhcchh-heeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 45889999998 776 34445667788888888888765 3334566667888899988866655443 2356788888
Q ss_pred EEEeeeec
Q 037229 398 VLRMFRFY 405 (577)
Q Consensus 398 ~L~l~~~~ 405 (577)
.|+++.|.
T Consensus 264 ~LNlsWc~ 271 (419)
T KOG2120|consen 264 ELNLSWCF 271 (419)
T ss_pred hcCchHhh
Confidence 88888887
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=5.3e-08 Score=90.65 Aligned_cols=106 Identities=20% Similarity=0.113 Sum_probs=66.0
Q ss_pred CccEEeCccCCCCC-cchhhcCCCCcccEEEccCCCCCc-ccchhhhcCcCCCEEeccCC-CCCcccc--cccCCCcCcE
Q 037229 299 QLLTLFLNINPLSM-IGGDLFQFKPCLKVLNLSNSPCLE-KLPSRISRLVSLQHLDLSSS-GILELPK--ELGFLGNLAC 373 (577)
Q Consensus 299 ~Lr~L~l~~~~~~~-~~~~~~~~l~~L~~L~L~~~~~l~-~lp~~i~~l~~L~~L~L~~~-~i~~lp~--~i~~L~~L~~ 373 (577)
.|+.|+++...++. -...+++.+.+|+-|.+.|. .+. .+...|.+-.+|+.|+|+.| .+++.-- -+.+++.|+.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~-~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGL-RLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhcccccc-ccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 47777777766432 12234667888888888888 665 44556777888888888886 4554322 2567888888
Q ss_pred ecccccccccccchHHhc-CCCCCcEEEeeeec
Q 037229 374 LNLENTSSHGTITRQLRS-NFSKPQVLRMFRFY 405 (577)
Q Consensus 374 L~l~~~~~l~~lp~~~i~-~l~~L~~L~l~~~~ 405 (577)
|++++|......-.-++. --++|..|+++++.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~r 297 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYR 297 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhH
Confidence 888888432222111111 12466667777765
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.00 E-value=9.2e-07 Score=91.86 Aligned_cols=106 Identities=25% Similarity=0.186 Sum_probs=76.5
Q ss_pred CCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchhhhcCcCCCEEeccCCCCCcccccccCCCcCcE
Q 037229 294 TPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSSSGILELPKELGFLGNLAC 373 (577)
Q Consensus 294 ~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~ 373 (577)
...+.+|..|++.+|.+..+... +..+.+|++|+++++ .|+.+. .+..+..|+.|++.+|.|..++ .+..+.+|+.
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N-~I~~i~-~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFN-KITKLE-GLSTLTLLKELNLSGNLISDIS-GLESLKSLKL 166 (414)
T ss_pred cccccceeeeeccccchhhcccc-hhhhhcchheecccc-cccccc-chhhccchhhheeccCcchhcc-CCccchhhhc
Confidence 35667788888888877666654 566788888888888 777775 5667777888888888777764 3555778888
Q ss_pred ecccccccccccch-HHhcCCCCCcEEEeeeec
Q 037229 374 LNLENTSSHGTITR-QLRSNFSKPQVLRMFRFY 405 (577)
Q Consensus 374 L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~ 405 (577)
+++++| .+..+.. . ...+.+|+.+.+.++.
T Consensus 167 l~l~~n-~i~~ie~~~-~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 167 LDLSYN-RIVDIENDE-LSELISLEELDLGGNS 197 (414)
T ss_pred ccCCcc-hhhhhhhhh-hhhccchHHHhccCCc
Confidence 888888 5565554 1 2577777777777775
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.83 E-value=3e-06 Score=88.06 Aligned_cols=123 Identities=26% Similarity=0.307 Sum_probs=97.7
Q ss_pred ecCeeEEEEecCCCCCCcC-CCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchhhhcCcCCCEEec
Q 037229 275 QEGTRRVSLKENKIGDLWE-TPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDL 353 (577)
Q Consensus 275 ~~~~r~l~l~~~~~~~l~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L 353 (577)
..++..+.+..+.+..+.. ...+++|++|++++|.+..+.. +..+..|+.|++++| .+..++ .+..+..|+.+++
T Consensus 94 ~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N-~i~~~~-~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGN-LISDIS-GLESLKSLKLLDL 169 (414)
T ss_pred ccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhheeccC-cchhcc-CCccchhhhcccC
Confidence 3448899999999999888 7889999999999999888877 778888999999999 988876 5566999999999
Q ss_pred cCCCCCccccc-ccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeee
Q 037229 354 SSSGILELPKE-LGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRF 404 (577)
Q Consensus 354 ~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~ 404 (577)
++|.+..++.. ...+.+|+.+++.++ .+..+.. +..+..+..+++..+
T Consensus 170 ~~n~i~~ie~~~~~~~~~l~~l~l~~n-~i~~i~~--~~~~~~l~~~~l~~n 218 (414)
T KOG0531|consen 170 SYNRIVDIENDELSELISLEELDLGGN-SIREIEG--LDLLKKLVLLSLLDN 218 (414)
T ss_pred CcchhhhhhhhhhhhccchHHHhccCC-chhcccc--hHHHHHHHHhhcccc
Confidence 99999888764 578889999999998 4444433 334444444444444
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.80 E-value=5.1e-07 Score=93.78 Aligned_cols=128 Identities=27% Similarity=0.274 Sum_probs=88.6
Q ss_pred CCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchhhhcCcCCCEEeccCCCCCccccc-ccCCCcCcEe
Q 037229 296 TSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSSSGILELPKE-LGFLGNLACL 374 (577)
Q Consensus 296 ~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L 374 (577)
.+..|.+.++++|.+..+..+ +.-++.|+.|||++| ++.+.. .+..+++|++|||++|.+..+|.- ...+. |+.|
T Consensus 162 ~Wn~L~~a~fsyN~L~~mD~S-Lqll~ale~LnLshN-k~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L 237 (1096)
T KOG1859|consen 162 VWNKLATASFSYNRLVLMDES-LQLLPALESLNLSHN-KFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLL 237 (1096)
T ss_pred hhhhHhhhhcchhhHHhHHHH-HHHHHHhhhhccchh-hhhhhH-HHHhcccccccccccchhccccccchhhhh-heee
Confidence 345566667777776655555 666788888888888 777765 777788888888888877777652 22333 8888
Q ss_pred cccccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCccCceeEEEecC
Q 037229 375 NLENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHLNVFSITLKS 443 (577)
Q Consensus 375 ~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 443 (577)
.+++| .++++.. |.+|.+|+.|+++.|-. .....+.-|..|..|+.|.+.+|.
T Consensus 238 ~lrnN-~l~tL~g--ie~LksL~~LDlsyNll-------------~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 238 NLRNN-ALTTLRG--IENLKSLYGLDLSYNLL-------------SEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred eeccc-HHHhhhh--HHhhhhhhccchhHhhh-------------hcchhhhHHHHHHHHHHHhhcCCc
Confidence 88888 6777765 78888888888877751 122344456666777777777654
No 49
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.78 E-value=1.3e-05 Score=87.28 Aligned_cols=126 Identities=18% Similarity=0.173 Sum_probs=78.1
Q ss_pred eeEEEEecCCCCC--CcC--CCCCCCccEEeCccCCCCCc-chhhcCCCCcccEEEccCCCCCcccchhhhcCcCCCEEe
Q 037229 278 TRRVSLKENKIGD--LWE--TPTSPQLLTLFLNINPLSMI-GGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLD 352 (577)
Q Consensus 278 ~r~l~l~~~~~~~--l~~--~~~~~~Lr~L~l~~~~~~~~-~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~ 352 (577)
++++.+.+...-. .+. ..-+|.|++|.+.+-.+..- -.....++++|+.||+|++ +++.+ ..+++|++|+.|.
T Consensus 124 L~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 124 LQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQVLS 201 (699)
T ss_pred hhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHHHHh
Confidence 6777776643211 110 15678888888877653221 1233567888888888888 88887 4788888888888
Q ss_pred ccCCCCCccc--ccccCCCcCcEeccccccccccc--chHH---hcCCCCCcEEEeeeec
Q 037229 353 LSSSGILELP--KELGFLGNLACLNLENTSSHGTI--TRQL---RSNFSKPQVLRMFRFY 405 (577)
Q Consensus 353 L~~~~i~~lp--~~i~~L~~L~~L~l~~~~~l~~l--p~~~---i~~l~~L~~L~l~~~~ 405 (577)
+++=.+..-. ..+.+|++|+.||++...+...- .... -..|++|+.|+.+++.
T Consensus 202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 202 MRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred ccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 8776555322 24667888888888876332221 1100 1236777777776654
No 50
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.77 E-value=8.8e-07 Score=86.50 Aligned_cols=102 Identities=18% Similarity=0.085 Sum_probs=56.2
Q ss_pred eeEEEEecCCCCCCcCC----CCCCCccEEeCccCC-CCC-cchhhcCCCCcccEEEccCCCCCccc--chhhhcCcCCC
Q 037229 278 TRRVSLKENKIGDLWET----PTSPQLLTLFLNINP-LSM-IGGDLFQFKPCLKVLNLSNSPCLEKL--PSRISRLVSLQ 349 (577)
Q Consensus 278 ~r~l~l~~~~~~~l~~~----~~~~~Lr~L~l~~~~-~~~-~~~~~~~~l~~L~~L~L~~~~~l~~l--p~~i~~l~~L~ 349 (577)
++.+++.+......... ..++++..|.+.+|. +++ .-.++-..+++|++|+|..|..++.. -.-...+++|.
T Consensus 140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~ 219 (483)
T KOG4341|consen 140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLK 219 (483)
T ss_pred cccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHH
Confidence 56666666543322221 667777777777776 211 11222345777888888887666643 11234467788
Q ss_pred EEeccCC-CCCc--ccccccCCCcCcEeccccc
Q 037229 350 HLDLSSS-GILE--LPKELGFLGNLACLNLENT 379 (577)
Q Consensus 350 ~L~L~~~-~i~~--lp~~i~~L~~L~~L~l~~~ 379 (577)
||++++| .|+. +-.-...+++|+.+.+++|
T Consensus 220 ~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC 252 (483)
T KOG4341|consen 220 YLNLSWCPQISGNGVQALQRGCKELEKLSLKGC 252 (483)
T ss_pred HhhhccCchhhcCcchHHhccchhhhhhhhccc
Confidence 8888776 2332 1111234455666666666
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.76 E-value=5e-06 Score=68.87 Aligned_cols=89 Identities=19% Similarity=0.244 Sum_probs=71.2
Q ss_pred CCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchhhhcCcCCCEEeccCCCCCcccccccCCCcCcEeccc
Q 037229 298 PQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSSSGILELPKELGFLGNLACLNLE 377 (577)
Q Consensus 298 ~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~ 377 (577)
.+|....+++|.++++|+.+-.+++.++.|+++++ .+..+|.++..++.||.|+++.|.+...|.-|..|.+|-.|+..
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCC
Confidence 45666777777777888887777778888888888 88888888888888888888888888888888788888888888
Q ss_pred ccccccccchH
Q 037229 378 NTSSHGTITRQ 388 (577)
Q Consensus 378 ~~~~l~~lp~~ 388 (577)
++ ....+|-.
T Consensus 132 ~n-a~~eid~d 141 (177)
T KOG4579|consen 132 EN-ARAEIDVD 141 (177)
T ss_pred CC-ccccCcHH
Confidence 77 55666654
No 52
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.73 E-value=6e-06 Score=79.03 Aligned_cols=112 Identities=20% Similarity=0.142 Sum_probs=51.5
Q ss_pred CCCCcccEEEccCCCCCc-c----cchhhhcCcCCCEEeccCCCCCcc--------------cccccCCCcCcEeccccc
Q 037229 319 QFKPCLKVLNLSNSPCLE-K----LPSRISRLVSLQHLDLSSSGILEL--------------PKELGFLGNLACLNLENT 379 (577)
Q Consensus 319 ~~l~~L~~L~L~~~~~l~-~----lp~~i~~l~~L~~L~L~~~~i~~l--------------p~~i~~L~~L~~L~l~~~ 379 (577)
..+++|++||||+| .+. . +-.-+.....|++|.|.+|.+... -.-+++-++|+++...+|
T Consensus 89 ~~~~~L~~ldLSDN-A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDN-AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred hcCCceeEeecccc-ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 34456666666666 333 1 112234455566666666644311 111333445666665555
Q ss_pred ccccccchH----HhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCccCceeEEEec
Q 037229 380 SSHGTITRQ----LRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHLNVFSITLK 442 (577)
Q Consensus 380 ~~l~~lp~~----~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~ 442 (577)
.+..-+.. .+...+.|+.+.+..+.... +........+..+++|+.|++..+
T Consensus 168 -rlen~ga~~~A~~~~~~~~leevr~~qN~I~~----------eG~~al~eal~~~~~LevLdl~DN 223 (382)
T KOG1909|consen 168 -RLENGGATALAEAFQSHPTLEEVRLSQNGIRP----------EGVTALAEALEHCPHLEVLDLRDN 223 (382)
T ss_pred -ccccccHHHHHHHHHhccccceEEEecccccC----------chhHHHHHHHHhCCcceeeecccc
Confidence 34333321 13344555555555554100 001123344556666666666644
No 53
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.70 E-value=2.7e-06 Score=81.32 Aligned_cols=236 Identities=19% Similarity=0.141 Sum_probs=139.2
Q ss_pred CCCCCccEEeCccCCCCC----cchhhcCCCCcccEEEccCCCCC----cccchh-------hhcCcCCCEEeccCCCCC
Q 037229 295 PTSPQLLTLFLNINPLSM----IGGDLFQFKPCLKVLNLSNSPCL----EKLPSR-------ISRLVSLQHLDLSSSGIL 359 (577)
Q Consensus 295 ~~~~~Lr~L~l~~~~~~~----~~~~~~~~l~~L~~L~L~~~~~l----~~lp~~-------i~~l~~L~~L~L~~~~i~ 359 (577)
..+..+..+++++|.+.. .-...+.+.+.|+..++++. .. .++|+. +-..++|++|+|+.|-+.
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 456677888888887431 11223667778888888876 22 234433 334568999999998543
Q ss_pred -----cccccccCCCcCcEecccccccccccchHH-------------hcCCCCCcEEEeeeecCcccccccccCCccCc
Q 037229 360 -----ELPKELGFLGNLACLNLENTSSHGTITRQL-------------RSNFSKPQVLRMFRFYGKAQYMKADSLPFGGS 421 (577)
Q Consensus 360 -----~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~-------------i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 421 (577)
.+-.-+.++..|++|.|.+| .+...-.+. ++.-++|+.+....|..... ..
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~----------ga 174 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG----------GA 174 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc----------cH
Confidence 23333567889999999998 443322221 34567888888887762110 11
Q ss_pred ccccccccCCccCceeEEEecCcccccCCCccCccceeeecCCCCCCCcEEEecccCCceEEecccCCCCCCCCC-ccCC
Q 037229 422 EFLVEQLCCLKHLNVFSITLKSSYALQKPNSEHTRSLEVLPLAEMRQLDKLHIAFCTRLQEFEIECPGRNLMDLT-WLIF 500 (577)
Q Consensus 422 ~~~~~~l~~L~~L~~L~l~~~~~~~l~~l~~~~l~~L~~~~l~~l~~L~~L~l~~~~~l~~l~l~~~~~~l~~l~-~l~~ 500 (577)
......++..+.|+.+.++.+++..-. +.-| ...+..+++|+.|++++..--.. .-..+. .+..
T Consensus 175 ~~~A~~~~~~~~leevr~~qN~I~~eG------~~al-~eal~~~~~LevLdl~DNtft~e--------gs~~LakaL~s 239 (382)
T KOG1909|consen 175 TALAEAFQSHPTLEEVRLSQNGIRPEG------VTAL-AEALEHCPHLEVLDLRDNTFTLE--------GSVALAKALSS 239 (382)
T ss_pred HHHHHHHHhccccceEEEecccccCch------hHHH-HHHHHhCCcceeeecccchhhhH--------HHHHHHHHhcc
Confidence 233455677788888888866543111 1000 12355678888888887421000 000011 2346
Q ss_pred CCCcceEeeccCCCccee----c----CC-CcccEEecCCcccccc----cccCCCCCCCcceEeeecCC
Q 037229 501 APNFRKIDINQSSHMEEI----I----CI-DRLRKVSGGYKKILKR----IYPDVLPLKNLKGITVSSCP 557 (577)
Q Consensus 501 l~~L~~L~l~~~~~~~~~----~----~~-~~L~~L~l~~~~~l~~----l~~~~~~~~~L~~L~i~~c~ 557 (577)
+|+|+.|++++|..-..= . .. |+|+.|.+.++..-.+ +.......|.|+.|++++|.
T Consensus 240 ~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 240 WPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred cchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 788999999998643211 0 11 8899998888653221 12223347888888888773
No 54
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.69 E-value=0.00012 Score=69.68 Aligned_cols=162 Identities=13% Similarity=0.052 Sum_probs=81.6
Q ss_pred ccccHHHHHHHHHHhhcCCCceEEEEEeccch--------------------------------hHHHH-----------
Q 037229 34 TVGLESTFDQVWSCLVEEEQVGIIGLYGMEGW--------------------------------IQEQI----------- 70 (577)
Q Consensus 34 ~vGr~~~~~~i~~~L~~~~~~~vv~I~G~gGw--------------------------------~~~~i----------- 70 (577)
++||++++++|.+++.. +....+.|+|..|. ....+
T Consensus 1 F~gR~~el~~l~~~l~~-~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~ 79 (234)
T PF01637_consen 1 FFGREKELEKLKELLES-GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELS 79 (234)
T ss_dssp S-S-HHHHHHHHHCHHH---SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCH
T ss_pred CCCHHHHHHHHHHHHHh-hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHH
Confidence 68999999999999987 55677888999981 11111
Q ss_pred ---HHHhCCCcc----hhccCCHHHHHHHHHHhcc---ccEEEEEecCCChh-h-------hcccCCCCCC--CCCCcEE
Q 037229 71 ---RRKLGLVDD----LWARKGLEEKAMNIFGILS---KEFVLCWMMCGSEL-I-------LTQMGVPVPN--PKRMSKV 130 (577)
Q Consensus 71 ---~~~l~~~~~----~~~~~~~~~~~~~l~~~L~---kr~LlVLDdv~~~~-~-------~~~l~~~~~~--~~~gsrI 130 (577)
...+....- .............+.+.+. ++++||+||+.... . ...+...+.. ....-.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 159 (234)
T PF01637_consen 80 EALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSI 159 (234)
T ss_dssp HHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEE
T ss_pred HHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceE
Confidence 111110000 0001122233344444454 56999999986544 1 1122111111 1223345
Q ss_pred EEEeCchhhhhc--------CCCCceEecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCchHHHH
Q 037229 131 LFTTRFVEVYGH--------KEADEMFRMECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLPLVLVT 198 (577)
Q Consensus 131 ivTTR~~~v~~~--------~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 198 (577)
|+++-+..+... .+....+.+++++.+++++++...+-.. ... +.-.+...+|...++|.|..|..
T Consensus 160 v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 160 VITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC--------HHHHHHHHHHHTT-HHHHHH
T ss_pred EEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 555555544433 2223458999999999999999876433 122 22345568899999999987753
No 55
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.65 E-value=0.0011 Score=68.68 Aligned_cols=169 Identities=12% Similarity=0.071 Sum_probs=100.4
Q ss_pred CCccccHHHHHHHHHHhhcC---CCceEEEEEeccch-----------------------------------hHHHHHHH
Q 037229 32 DLTVGLESTFDQVWSCLVEE---EQVGIIGLYGMEGW-----------------------------------IQEQIRRK 73 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~---~~~~vv~I~G~gGw-----------------------------------~~~~i~~~ 73 (577)
+.++||++++++|...+... .....+-|+|..|. ++.+|+++
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~ 109 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQ 109 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHH
Confidence 68999999999999998553 34455779999991 44556666
Q ss_pred hCCCcchhccCCHHHHHHHHHHhcc---ccEEEEEecCCChh------hhcccCCCCCCCCCCcE--EEEEeCchhhhhc
Q 037229 74 LGLVDDLWARKGLEEKAMNIFGILS---KEFVLCWMMCGSEL------ILTQMGVPVPNPKRMSK--VLFTTRFVEVYGH 142 (577)
Q Consensus 74 l~~~~~~~~~~~~~~~~~~l~~~L~---kr~LlVLDdv~~~~------~~~~l~~~~~~~~~gsr--IivTTR~~~v~~~ 142 (577)
+..........+.++....+.+.+. +..+||+|+++... .+..+...+.. ..+++ ||.++....+...
T Consensus 110 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~~~~~~ 188 (394)
T PRK00411 110 LFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDLTFLYI 188 (394)
T ss_pred hcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCcchhhh
Confidence 6542111123356677778888876 45889999998642 23333222221 22333 5666665544322
Q ss_pred CC-------CCceEecCCCCHHHHHHHHHHhhC---CCCCCCCCChhHHHHHHHHHcCCCchHHHHHHH
Q 037229 143 KE-------ADEMFRMECLRHEEAWKLFQMKVG---KETMDDHSDIPKLVEIVTKECGGLPLVLVTTAR 201 (577)
Q Consensus 143 ~~-------~~~~~~l~~L~~~~~~~Lf~~~a~---~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~ 201 (577)
.. ....+.+.+++.++..+++..++. ......+..++.+++......+..+.|+..+-.
T Consensus 189 l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~ 257 (394)
T PRK00411 189 LDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRR 257 (394)
T ss_pred cCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 21 124678999999999999988762 222112222333333333334557777766543
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.61 E-value=1.6e-05 Score=86.43 Aligned_cols=104 Identities=21% Similarity=0.226 Sum_probs=61.2
Q ss_pred CCccEEeCccCC--CCCcchhhcCCCCcccEEEccCCCCCc--ccchhhhcCcCCCEEeccCCCCCcccccccCCCcCcE
Q 037229 298 PQLLTLFLNINP--LSMIGGDLFQFKPCLKVLNLSNSPCLE--KLPSRISRLVSLQHLDLSSSGILELPKELGFLGNLAC 373 (577)
Q Consensus 298 ~~Lr~L~l~~~~--~~~~~~~~~~~l~~L~~L~L~~~~~l~--~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~ 373 (577)
.+|+.|++.|.. ...-|..+...+|.|+.|.+++- .+. ++-.-..++++|+.||+++|+++.+ .++++|++||.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCc-eecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 567777776655 23334444455677777777765 332 2233344567777777777777766 56777777777
Q ss_pred ecccccccccccc--hHHhcCCCCCcEEEeeeec
Q 037229 374 LNLENTSSHGTIT--RQLRSNFSKPQVLRMFRFY 405 (577)
Q Consensus 374 L~l~~~~~l~~lp--~~~i~~l~~L~~L~l~~~~ 405 (577)
|.+++= .+..-+ .. +-+|++|++|+++...
T Consensus 200 L~mrnL-e~e~~~~l~~-LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 200 LSMRNL-EFESYQDLID-LFNLKKLRVLDISRDK 231 (699)
T ss_pred HhccCC-CCCchhhHHH-HhcccCCCeeeccccc
Confidence 766654 222211 12 5567777777776654
No 57
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.60 E-value=0.0034 Score=61.12 Aligned_cols=105 Identities=9% Similarity=0.094 Sum_probs=66.2
Q ss_pred ccEEEEEecCCCh--hhhcccCCCC---CCCCCCcEEEEEeCchhhhhcCC----------CCceEecCCCCHHHHHHHH
Q 037229 99 KEFVLCWMMCGSE--LILTQMGVPV---PNPKRMSKVLFTTRFVEVYGHKE----------ADEMFRMECLRHEEAWKLF 163 (577)
Q Consensus 99 kr~LlVLDdv~~~--~~~~~l~~~~---~~~~~gsrIivTTR~~~v~~~~~----------~~~~~~l~~L~~~~~~~Lf 163 (577)
+++++|+||++.. ..++.+.... .+......|++|.... ...... ....+++.+++.++..+++
T Consensus 123 ~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l 201 (269)
T TIGR03015 123 KRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREETREYI 201 (269)
T ss_pred CCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHHHHHH
Confidence 7899999999875 3455543211 1122233455665432 211111 1346789999999999998
Q ss_pred HHhhCCCCCCCC-CChhHHHHHHHHHcCCCchHHHHHHHHHh
Q 037229 164 QMKVGKETMDDH-SDIPKLVEIVTKECGGLPLVLVTTARAMA 204 (577)
Q Consensus 164 ~~~a~~~~~~~~-~~~~~~~~~i~~~c~glPLai~~~g~~L~ 204 (577)
...+........ .--.+..+.|++.++|.|..+..++..+-
T Consensus 202 ~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~~ 243 (269)
T TIGR03015 202 EHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRLL 243 (269)
T ss_pred HHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHHH
Confidence 877643221111 22347888999999999999998887653
No 58
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.47 E-value=1.9e-05 Score=74.03 Aligned_cols=104 Identities=23% Similarity=0.135 Sum_probs=64.3
Q ss_pred EEeCccCCCCCcc--hhhcCCCCcccEEEccCCCCCc---ccchhhhcCcCCCEEeccCCCCCcccccc-cCCCcCcEec
Q 037229 302 TLFLNINPLSMIG--GDLFQFKPCLKVLNLSNSPCLE---KLPSRISRLVSLQHLDLSSSGILELPKEL-GFLGNLACLN 375 (577)
Q Consensus 302 ~L~l~~~~~~~~~--~~~~~~l~~L~~L~L~~~~~l~---~lp~~i~~l~~L~~L~L~~~~i~~lp~~i-~~L~~L~~L~ 375 (577)
.+.+.++.+.... ..+-....+++.|||.+| .+. ++..-+.+|++|++|+|+.|.+..--.+. -.+.+|++|-
T Consensus 49 llvln~~~id~~gd~~~~~~~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lV 127 (418)
T KOG2982|consen 49 LLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLV 127 (418)
T ss_pred hheecCCCCCcchhHHHHHHHhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEE
Confidence 4455555543322 222356788888999988 665 34445667889999999888644221111 2456888888
Q ss_pred ccccccccccchHHhcCCCCCcEEEeeeecC
Q 037229 376 LENTSSHGTITRQLRSNFSKPQVLRMFRFYG 406 (577)
Q Consensus 376 l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~ 406 (577)
|.++.--..-..+.+..++.+++|+++.|..
T Consensus 128 LNgT~L~w~~~~s~l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 128 LNGTGLSWTQSTSSLDDLPKVTELHMSDNSL 158 (418)
T ss_pred EcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence 8877211111122367788888888888863
No 59
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.43 E-value=5.1e-06 Score=81.30 Aligned_cols=62 Identities=23% Similarity=0.155 Sum_probs=36.6
Q ss_pred CCCCCccEEeCccCC-CCCcc-hhhcCCCCcccEEEccCCCCCcc--cchhhhcCcCCCEEeccCC
Q 037229 295 PTSPQLLTLFLNINP-LSMIG-GDLFQFKPCLKVLNLSNSPCLEK--LPSRISRLVSLQHLDLSSS 356 (577)
Q Consensus 295 ~~~~~Lr~L~l~~~~-~~~~~-~~~~~~l~~L~~L~L~~~~~l~~--lp~~i~~l~~L~~L~L~~~ 356 (577)
..|++|+.+++..|. ++... ..+...+++|.||++++|+.++. +-.-......|+.+.++||
T Consensus 187 ~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC 252 (483)
T KOG4341|consen 187 RYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGC 252 (483)
T ss_pred HhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhccc
Confidence 567777777777755 33222 22345678888888888865553 2223344555666666655
No 60
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.41 E-value=2.6e-06 Score=88.71 Aligned_cols=126 Identities=17% Similarity=0.104 Sum_probs=94.3
Q ss_pred CcccEEEccCCCCCcccchhhhcCcCCCEEeccCCCCCcccccccCCCcCcEecccccccccccchHHhcCCCCCcEEEe
Q 037229 322 PCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSSSGILELPKELGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRM 401 (577)
Q Consensus 322 ~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l 401 (577)
..|.+.+.++| .+..+..++.-+++|+.|||++|++...- .+..|++|++|||++| .++.+|.-....+. |+.|.+
T Consensus 164 n~L~~a~fsyN-~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 164 NKLATASFSYN-RLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred hhHhhhhcchh-hHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccc-hhccccccchhhhh-heeeee
Confidence 45667777778 78888888888999999999999988775 7888999999999999 88999872122344 999999
Q ss_pred eeecCcccccccccCCccCcccccccccCCccCceeEEEecCcccccCCCccCccceeeecCCCCCCCcEEEeccc
Q 037229 402 FRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHLNVFSITLKSSYALQKPNSEHTRSLEVLPLAEMRQLDKLHIAFC 477 (577)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~l~~~~l~~L~~~~l~~l~~L~~L~l~~~ 477 (577)
.+|. ...+.++.+|++|+.||+++|-+.....+.. +..+..|..|.+.|.
T Consensus 240 rnN~----------------l~tL~gie~LksL~~LDlsyNll~~hseL~p----------LwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 240 RNNA----------------LTTLRGIENLKSLYGLDLSYNLLSEHSELEP----------LWSLSSLIVLWLEGN 289 (1096)
T ss_pred cccH----------------HHhhhhHHhhhhhhccchhHhhhhcchhhhH----------HHHHHHHHHHhhcCC
Confidence 9886 2356677889999999999886554444222 333455566666654
No 61
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.34 E-value=3.9e-05 Score=63.71 Aligned_cols=85 Identities=26% Similarity=0.313 Sum_probs=78.4
Q ss_pred eeEEEEecCCCCCCcCC--CCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchhhhcCcCCCEEeccC
Q 037229 278 TRRVSLKENKIGDLWET--PTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSS 355 (577)
Q Consensus 278 ~r~l~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~ 355 (577)
+..+++++|.+..+|.. .+++.+++|.+.+|.+.++|.. +..++.||.|+++.| .+...|.-|..|.+|-+|+..+
T Consensus 55 l~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 55 LTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFN-PLNAEPRVIAPLIKLDMLDSPE 132 (177)
T ss_pred EEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccC-ccccchHHHHHHHhHHHhcCCC
Confidence 67789999999988876 7788999999999999999999 899999999999999 9999999999999999999999
Q ss_pred CCCCccccc
Q 037229 356 SGILELPKE 364 (577)
Q Consensus 356 ~~i~~lp~~ 364 (577)
+.+.++|-.
T Consensus 133 na~~eid~d 141 (177)
T KOG4579|consen 133 NARAEIDVD 141 (177)
T ss_pred CccccCcHH
Confidence 998888876
No 62
>PRK06893 DNA replication initiation factor; Validated
Probab=97.23 E-value=0.0032 Score=59.62 Aligned_cols=141 Identities=9% Similarity=0.012 Sum_probs=82.9
Q ss_pred ceEEEEEeccch----hHHHHHHHhCCCcchhccCCHH---HHHHHHHHhccccEEEEEecCCCh---hhhcc-cCCCCC
Q 037229 54 VGIIGLYGMEGW----IQEQIRRKLGLVDDLWARKGLE---EKAMNIFGILSKEFVLCWMMCGSE---LILTQ-MGVPVP 122 (577)
Q Consensus 54 ~~vv~I~G~gGw----~~~~i~~~l~~~~~~~~~~~~~---~~~~~l~~~L~kr~LlVLDdv~~~---~~~~~-l~~~~~ 122 (577)
...+.++|..|- +...|..++..........+.. .....+.+.+++.-+||+||+|.. .+|+. +...+.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~dlLilDDi~~~~~~~~~~~~l~~l~n 118 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYFSPAVLENLEQQDLVCLDDLQAVIGNEEWELAIFDLFN 118 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhhhhHHHHhhcccCCEEEEeChhhhcCChHHHHHHHHHHH
Confidence 356889999992 5666655542211111111121 122233333333348999999973 44552 222232
Q ss_pred CC-CCCcEEEEEeCc----------hhhhhcCCCCceEecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCC
Q 037229 123 NP-KRMSKVLFTTRF----------VEVYGHKEADEMFRMECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGG 191 (577)
Q Consensus 123 ~~-~~gsrIivTTR~----------~~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~g 191 (577)
.. ..|+.|||+|.+ .++...+.....++++++++++.++++.+.++...... -+++..-+++.+.|
T Consensus 119 ~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l---~~~v~~~L~~~~~~ 195 (229)
T PRK06893 119 RIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIEL---SDEVANFLLKRLDR 195 (229)
T ss_pred HHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHhccC
Confidence 21 235666555443 35666666677899999999999999999987544222 24667778888887
Q ss_pred CchHHH
Q 037229 192 LPLVLV 197 (577)
Q Consensus 192 lPLai~ 197 (577)
-.-++.
T Consensus 196 d~r~l~ 201 (229)
T PRK06893 196 DMHTLF 201 (229)
T ss_pred CHHHHH
Confidence 654443
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.17 E-value=0.00052 Score=61.11 Aligned_cols=105 Identities=20% Similarity=0.206 Sum_probs=71.3
Q ss_pred CCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchhhhc-CcCCCEEeccCCCCCcccc--cccCCCcCcE
Q 037229 297 SPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISR-LVSLQHLDLSSSGILELPK--ELGFLGNLAC 373 (577)
Q Consensus 297 ~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~-l~~L~~L~L~~~~i~~lp~--~i~~L~~L~~ 373 (577)
..+...+++.+|.+..++. |..++.|.+|.|++| .|+.+.+.+.. +++|..|.|.+|+|.++-+ -...+++|++
T Consensus 41 ~d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY 117 (233)
T ss_pred ccccceecccccchhhccc--CCCccccceEEecCC-cceeeccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence 3455677777777666655 777888888888888 88877555544 4568888888887766533 2456677888
Q ss_pred ecccccccccccc---hHHhcCCCCCcEEEeeeec
Q 037229 374 LNLENTSSHGTIT---RQLRSNFSKPQVLRMFRFY 405 (577)
Q Consensus 374 L~l~~~~~l~~lp---~~~i~~l~~L~~L~l~~~~ 405 (577)
|.+-+| .+..-. .-++.++++|+.|+.....
T Consensus 118 Ltll~N-pv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 118 LTLLGN-PVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred eeecCC-chhcccCceeEEEEecCcceEeehhhhh
Confidence 877777 333322 1246778888888887765
No 64
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.15 E-value=0.00039 Score=61.87 Aligned_cols=80 Identities=24% Similarity=0.282 Sum_probs=41.8
Q ss_pred cccEEEccCCCCCcccchhhhcCcCCCEEeccCCCCCcccccccC-CCcCcEecccccccccccch-HHhcCCCCCcEEE
Q 037229 323 CLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSSSGILELPKELGF-LGNLACLNLENTSSHGTITR-QLRSNFSKPQVLR 400 (577)
Q Consensus 323 ~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~-L~~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~L~ 400 (577)
..-.+||+++ .+..++ .+..+..|.+|.+.+|.|..+-+.+.. +++|+.|.+.+| ++..+-+ .-+..+++|++|.
T Consensus 43 ~~d~iDLtdN-dl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDN-DLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceeccccc-chhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceee
Confidence 3445666666 555444 344555666666666666655554433 344666666655 3333221 0044555666666
Q ss_pred eeeec
Q 037229 401 MFRFY 405 (577)
Q Consensus 401 l~~~~ 405 (577)
+-++.
T Consensus 120 ll~Np 124 (233)
T KOG1644|consen 120 LLGNP 124 (233)
T ss_pred ecCCc
Confidence 65554
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.03 E-value=4.9e-05 Score=70.64 Aligned_cols=102 Identities=23% Similarity=0.170 Sum_probs=70.9
Q ss_pred CCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchhhhcCcCCCEEeccCCCCCccccc--ccCCCcCcEe
Q 037229 297 SPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSSSGILELPKE--LGFLGNLACL 374 (577)
Q Consensus 297 ~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~--i~~L~~L~~L 374 (577)
+.+.+.|++.||.+.++.. ..+|+.|++|.|+-| .|+.|. .+..+++|+.|.|+.|.|..+-+- +.+|++|++|
T Consensus 18 l~~vkKLNcwg~~L~DIsi--c~kMp~lEVLsLSvN-kIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISI--CEKMPLLEVLSLSVN-KISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHHHH--HHhcccceeEEeecc-ccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 4456667777777666544 677888888888888 888775 466778888888888877766442 5678888888
Q ss_pred cccccccccccch----HHhcCCCCCcEEEee
Q 037229 375 NLENTSSHGTITR----QLRSNFSKPQVLRMF 402 (577)
Q Consensus 375 ~l~~~~~l~~lp~----~~i~~l~~L~~L~l~ 402 (577)
.|..|+....-+. .++.-|++|+.|+=.
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv 125 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLDNV 125 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhccCc
Confidence 8887755544443 235567777777643
No 66
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=96.94 E-value=0.0062 Score=60.58 Aligned_cols=166 Identities=16% Similarity=0.101 Sum_probs=98.5
Q ss_pred CCccccHHHHHHHHHHhhcC----CCceEEEEEeccch----hHHHHHHHhCCCcchhc---cCCHHHHHHHHHHhcccc
Q 037229 32 DLTVGLESTFDQVWSCLVEE----EQVGIIGLYGMEGW----IQEQIRRKLGLVDDLWA---RKGLEEKAMNIFGILSKE 100 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~----~~~~vv~I~G~gGw----~~~~i~~~l~~~~~~~~---~~~~~~~~~~l~~~L~kr 100 (577)
.++||++..++++..++... .....+-++|+.|- +.+.++.+++..-.... ......+...+. .+...
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~ 82 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLAAILT-NLEEG 82 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCchhHHHHHH-hcccC
Confidence 57899999999999988742 33456779999993 66677777654321101 111222222221 12355
Q ss_pred EEEEEecCCCh--hhhcccCCCCC-------------------CCCCCcEEEEEeCchhhhhcC--CCCceEecCCCCHH
Q 037229 101 FVLCWMMCGSE--LILTQMGVPVP-------------------NPKRMSKVLFTTRFVEVYGHK--EADEMFRMECLRHE 157 (577)
Q Consensus 101 ~LlVLDdv~~~--~~~~~l~~~~~-------------------~~~~gsrIivTTR~~~v~~~~--~~~~~~~l~~L~~~ 157 (577)
.++++||+... ...+.+...+. ...+.+-|..||+...+.... .....+++++++.+
T Consensus 83 ~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~ 162 (305)
T TIGR00635 83 DVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDRFGIILRLEFYTVE 162 (305)
T ss_pred CEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHhhcceEEEeCCCCHH
Confidence 68888888642 11222211110 011245566677765443221 12356899999999
Q ss_pred HHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCchHHHHHHH
Q 037229 158 EAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLPLVLVTTAR 201 (577)
Q Consensus 158 ~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~ 201 (577)
+..+++.+.+..... .--.+....|++.|+|.|-.+..++.
T Consensus 163 e~~~il~~~~~~~~~---~~~~~al~~ia~~~~G~pR~~~~ll~ 203 (305)
T TIGR00635 163 ELAEIVSRSAGLLNV---EIEPEAALEIARRSRGTPRIANRLLR 203 (305)
T ss_pred HHHHHHHHHHHHhCC---CcCHHHHHHHHHHhCCCcchHHHHHH
Confidence 999999988754331 12245678899999999976654443
No 67
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=96.81 E-value=0.039 Score=56.39 Aligned_cols=161 Identities=11% Similarity=0.049 Sum_probs=91.7
Q ss_pred CCccccHHHHHHHHHHhhcC---CCceEEEEEeccch---------------------------------------hHHH
Q 037229 32 DLTVGLESTFDQVWSCLVEE---EQVGIIGLYGMEGW---------------------------------------IQEQ 69 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~---~~~~vv~I~G~gGw---------------------------------------~~~~ 69 (577)
+.++|||+++++|..+|... .....+-|+|+.|- ++..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 68999999999999998753 34456889999991 3333
Q ss_pred HHHHhC---CCcchhccCCHHHHHHHHHHhcc---ccEEEEEecCCChh-h----hcccCCCC-CCCC--CCcEEEEEeC
Q 037229 70 IRRKLG---LVDDLWARKGLEEKAMNIFGILS---KEFVLCWMMCGSEL-I----LTQMGVPV-PNPK--RMSKVLFTTR 135 (577)
Q Consensus 70 i~~~l~---~~~~~~~~~~~~~~~~~l~~~L~---kr~LlVLDdv~~~~-~----~~~l~~~~-~~~~--~gsrIivTTR 135 (577)
|++++. .... ....+..+....+.+.+. ++++||||+++... . +..+.... .... ..-.+|.+|.
T Consensus 95 i~~~l~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n 173 (365)
T TIGR02928 95 LANQLRGSGEEVP-TTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISN 173 (365)
T ss_pred HHHHHhhcCCCCC-CCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEEC
Confidence 444441 1110 011234455566666664 57899999998651 1 22222110 1111 1234455554
Q ss_pred chhhhhcCC-------CCceEecCCCCHHHHHHHHHHhhC---CCCCCCCCChhHHHHHHHHHcCCCch
Q 037229 136 FVEVYGHKE-------ADEMFRMECLRHEEAWKLFQMKVG---KETMDDHSDIPKLVEIVTKECGGLPL 194 (577)
Q Consensus 136 ~~~v~~~~~-------~~~~~~l~~L~~~~~~~Lf~~~a~---~~~~~~~~~~~~~~~~i~~~c~glPL 194 (577)
......... ....+.+.+.+.++..+++..++. ... ...++.-+....++....|.+-
T Consensus 174 ~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~-~~~~~~l~~i~~~~~~~~Gd~R 241 (365)
T TIGR02928 174 DLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDG-VLDDGVIPLCAALAAQEHGDAR 241 (365)
T ss_pred CcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCC-CCChhHHHHHHHHHHHhcCCHH
Confidence 433221111 124678999999999999988763 221 1223333445556677778763
No 68
>PF05729 NACHT: NACHT domain
Probab=96.80 E-value=0.0047 Score=55.02 Aligned_cols=69 Identities=13% Similarity=0.078 Sum_probs=48.6
Q ss_pred ccEEEEEecCCChhh---------hcccC-CCCCC-CCCCcEEEEEeCchhh---hhcCCCCceEecCCCCHHHHHHHHH
Q 037229 99 KEFVLCWMMCGSELI---------LTQMG-VPVPN-PKRMSKVLFTTRFVEV---YGHKEADEMFRMECLRHEEAWKLFQ 164 (577)
Q Consensus 99 kr~LlVLDdv~~~~~---------~~~l~-~~~~~-~~~gsrIivTTR~~~v---~~~~~~~~~~~l~~L~~~~~~~Lf~ 164 (577)
+++++|+|++++... +.++. .-++. ...+.+|+||+|.... .........++++++++++..+++.
T Consensus 81 ~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 160 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQYLR 160 (166)
T ss_pred CceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHHHH
Confidence 999999999976422 22221 12222 2458999999998776 3444455689999999999999987
Q ss_pred Hhh
Q 037229 165 MKV 167 (577)
Q Consensus 165 ~~a 167 (577)
+..
T Consensus 161 ~~f 163 (166)
T PF05729_consen 161 KYF 163 (166)
T ss_pred HHh
Confidence 654
No 69
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.76 E-value=0.00092 Score=63.01 Aligned_cols=109 Identities=20% Similarity=0.218 Sum_probs=69.4
Q ss_pred CCCCCccEEeCccCCCCCcch--hhcCCCCcccEEEccCCCCCcccchhh-hcCcCCCEEeccCCCCC--cccccccCCC
Q 037229 295 PTSPQLLTLFLNINPLSMIGG--DLFQFKPCLKVLNLSNSPCLEKLPSRI-SRLVSLQHLDLSSSGIL--ELPKELGFLG 369 (577)
Q Consensus 295 ~~~~~Lr~L~l~~~~~~~~~~--~~~~~l~~L~~L~L~~~~~l~~lp~~i-~~l~~L~~L~L~~~~i~--~lp~~i~~L~ 369 (577)
..+..++.+++.+|.+.+..+ .++.++++|++|+++.| .+..--.+. -.+.+|++|-|.++.+. ...+....++
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N-~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCN-SLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP 146 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCC-cCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence 667888899999988654332 23678999999999988 544221122 35678999999888653 5555667788
Q ss_pred cCcEecccccccccccc--hHHhcCCC-CCcEEEeeeec
Q 037229 370 NLACLNLENTSSHGTIT--RQLRSNFS-KPQVLRMFRFY 405 (577)
Q Consensus 370 ~L~~L~l~~~~~l~~lp--~~~i~~l~-~L~~L~l~~~~ 405 (577)
.++.|.++.| ++..+- .+-+.... .+++|+...|.
T Consensus 147 ~vtelHmS~N-~~rq~n~Dd~c~e~~s~~v~tlh~~~c~ 184 (418)
T KOG2982|consen 147 KVTELHMSDN-SLRQLNLDDNCIEDWSTEVLTLHQLPCL 184 (418)
T ss_pred hhhhhhhccc-hhhhhccccccccccchhhhhhhcCCcH
Confidence 8888877776 332221 11122222 55666666665
No 70
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.64 E-value=0.0011 Score=61.48 Aligned_cols=106 Identities=24% Similarity=0.163 Sum_probs=70.8
Q ss_pred CCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCC--CCCcccchhhhcCcCCCEEeccCCCCCccccc---ccCCCc
Q 037229 296 TSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNS--PCLEKLPSRISRLVSLQHLDLSSSGILELPKE---LGFLGN 370 (577)
Q Consensus 296 ~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~--~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~---i~~L~~ 370 (577)
.+..|..+.+.+..+..+.. |..+++|++|.++.| .-...++..+.++++|++|++++|+|+- +++ ...+.+
T Consensus 41 ~~~~le~ls~~n~gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~-lstl~pl~~l~n 117 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD-LSTLRPLKELEN 117 (260)
T ss_pred cccchhhhhhhccceeeccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc-ccccchhhhhcc
Confidence 34445555555555444433 667888999999888 2233555556667999999999997764 222 456778
Q ss_pred CcEecccccccccccc---hHHhcCCCCCcEEEeeeec
Q 037229 371 LACLNLENTSSHGTIT---RQLRSNFSKPQVLRMFRFY 405 (577)
Q Consensus 371 L~~L~l~~~~~l~~lp---~~~i~~l~~L~~L~l~~~~ 405 (577)
|..|++.+|. .+.+- ..++.-+++|++|+...+.
T Consensus 118 L~~Ldl~n~~-~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 118 LKSLDLFNCS-VTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred hhhhhcccCC-ccccccHHHHHHHHhhhhccccccccC
Confidence 8899999883 33332 2445668899999887776
No 71
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.60 E-value=0.024 Score=65.56 Aligned_cols=112 Identities=12% Similarity=0.103 Sum_probs=70.1
Q ss_pred HHHHHHHHhcc---ccEEEEEecCCChh--hh-cccCCCCCCCCCCcEEEEEeCchhhh---hcCCCCceEecC----CC
Q 037229 88 EKAMNIFGILS---KEFVLCWMMCGSEL--IL-TQMGVPVPNPKRMSKVLFTTRFVEVY---GHKEADEMFRME----CL 154 (577)
Q Consensus 88 ~~~~~l~~~L~---kr~LlVLDdv~~~~--~~-~~l~~~~~~~~~gsrIivTTR~~~v~---~~~~~~~~~~l~----~L 154 (577)
.....+...+. .+++|||||+-..+ .. +.+..-+.....+-++|||||...-. ..-......++. +|
T Consensus 107 ~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f 186 (903)
T PRK04841 107 SLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAF 186 (903)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCC
Confidence 33444444443 78999999996532 11 22222222234467888999984211 111112345555 89
Q ss_pred CHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCchHHHHHHHHHhc
Q 037229 155 RHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLPLVLVTTARAMAY 205 (577)
Q Consensus 155 ~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~~ 205 (577)
+.+|+.++|.......- -.+....+.+.|+|.|+++..++..++.
T Consensus 187 ~~~e~~~ll~~~~~~~~------~~~~~~~l~~~t~Gwp~~l~l~~~~~~~ 231 (903)
T PRK04841 187 DHQEAQQFFDQRLSSPI------EAAESSRLCDDVEGWATALQLIALSARQ 231 (903)
T ss_pred CHHHHHHHHHhccCCCC------CHHHHHHHHHHhCChHHHHHHHHHHHhh
Confidence 99999999987654321 2355678999999999999988877654
No 72
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.60 E-value=0.00015 Score=67.42 Aligned_cols=83 Identities=19% Similarity=0.129 Sum_probs=69.5
Q ss_pred CCcccEEEccCCCCCcccchhhhcCcCCCEEeccCCCCCcccccccCCCcCcEecccccccccccch-HHhcCCCCCcEE
Q 037229 321 KPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSSSGILELPKELGFLGNLACLNLENTSSHGTITR-QLRSNFSKPQVL 399 (577)
Q Consensus 321 l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~L 399 (577)
+.+.+.|+..|| .+..+. -+.+|+.|++|.|+-|+|+.+- .+..+++|+.|+|+.| .+.++.+ ..+.++++|+.|
T Consensus 18 l~~vkKLNcwg~-~L~DIs-ic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDIS-ICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCC-CccHHH-HHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhH
Confidence 567788999999 998875 4567999999999999999884 5788999999999998 6777664 336899999999
Q ss_pred EeeeecCc
Q 037229 400 RMFRFYGK 407 (577)
Q Consensus 400 ~l~~~~~~ 407 (577)
.+..|.+.
T Consensus 94 WL~ENPCc 101 (388)
T KOG2123|consen 94 WLDENPCC 101 (388)
T ss_pred hhccCCcc
Confidence 99988743
No 73
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.52 E-value=0.025 Score=58.67 Aligned_cols=164 Identities=13% Similarity=0.045 Sum_probs=96.8
Q ss_pred CCccccHHHHHH---HHHHhhcCCCceEEEEEeccch----hHHHHHHHhCCCcchh-----ccCCHHHHHHHHHHhcc-
Q 037229 32 DLTVGLESTFDQ---VWSCLVEEEQVGIIGLYGMEGW----IQEQIRRKLGLVDDLW-----ARKGLEEKAMNIFGILS- 98 (577)
Q Consensus 32 ~~~vGr~~~~~~---i~~~L~~~~~~~vv~I~G~gGw----~~~~i~~~l~~~~~~~-----~~~~~~~~~~~l~~~L~- 98 (577)
+++||.+..+.. +.+++.. +....+-++|..|- +.+.|+......-... ...+...+.+.......
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~-~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~~~~ir~ii~~~~~~~~~ 90 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEA-GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSGVKDLREVIEEARQRRSA 90 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHc-CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccccHHHHHHHHHHHHHhhhc
Confidence 568999888665 7777765 55667788999994 6666666654332111 11122233333333232
Q ss_pred -ccEEEEEecCCCh--hhhcccCCCCCCCCCCcEEEEE--eCchh--hh-hcCCCCceEecCCCCHHHHHHHHHHhhCCC
Q 037229 99 -KEFVLCWMMCGSE--LILTQMGVPVPNPKRMSKVLFT--TRFVE--VY-GHKEADEMFRMECLRHEEAWKLFQMKVGKE 170 (577)
Q Consensus 99 -kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivT--TR~~~--v~-~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~ 170 (577)
++.+|++|+++.. .+.+.+...+. .|..+++. |.+.. +. ....-...+.+.+++.++.++++.+.+...
T Consensus 91 g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~ 167 (413)
T PRK13342 91 GRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDK 167 (413)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHh
Confidence 6789999999864 34555543332 25555553 33332 11 111223678999999999999998865332
Q ss_pred CCCCCCChhHHHHHHHHHcCCCchHHHHH
Q 037229 171 TMDDHSDIPKLVEIVTKECGGLPLVLVTT 199 (577)
Q Consensus 171 ~~~~~~~~~~~~~~i~~~c~glPLai~~~ 199 (577)
......--.+....+++.|+|-+..+..+
T Consensus 168 ~~~~i~i~~~al~~l~~~s~Gd~R~aln~ 196 (413)
T PRK13342 168 ERGLVELDDEALDALARLANGDARRALNL 196 (413)
T ss_pred hcCCCCCCHHHHHHHHHhCCCCHHHHHHH
Confidence 10110222466778899999988665433
No 74
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=96.35 E-value=0.017 Score=58.00 Aligned_cols=166 Identities=16% Similarity=0.074 Sum_probs=97.7
Q ss_pred CCccccHHHHHHHHHHhhcC----CCceEEEEEeccch----hHHHHHHHhCCCcchh---ccCCHHHHHHHHHHhcccc
Q 037229 32 DLTVGLESTFDQVWSCLVEE----EQVGIIGLYGMEGW----IQEQIRRKLGLVDDLW---ARKGLEEKAMNIFGILSKE 100 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~----~~~~vv~I~G~gGw----~~~~i~~~l~~~~~~~---~~~~~~~~~~~l~~~L~kr 100 (577)
+++||+++.++.+..++... .....+-|+|+.|- +.+.+++.++..-... .......+. .+...+.+.
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~~~~l~-~~l~~l~~~ 103 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKPGDLA-AILTNLEEG 103 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccChHHHH-HHHHhcccC
Confidence 67999999999998887642 34556789999992 6666677665432100 111112222 222223345
Q ss_pred EEEEEecCCChh--hhcccCCC---------CCC----------CCCCcEEEEEeCchhhhhcC--CCCceEecCCCCHH
Q 037229 101 FVLCWMMCGSEL--ILTQMGVP---------VPN----------PKRMSKVLFTTRFVEVYGHK--EADEMFRMECLRHE 157 (577)
Q Consensus 101 ~LlVLDdv~~~~--~~~~l~~~---------~~~----------~~~gsrIivTTR~~~v~~~~--~~~~~~~l~~L~~~ 157 (577)
-+|++||+.... ..+.+... +.. -.+.+-|..|||...+.... .....+++++++.+
T Consensus 104 ~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~ 183 (328)
T PRK00080 104 DVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVE 183 (328)
T ss_pred CEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHHhcCeeeecCCCCHH
Confidence 678899886421 11111100 000 01234466677755443221 12356899999999
Q ss_pred HHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCchHHHHHHH
Q 037229 158 EAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLPLVLVTTAR 201 (577)
Q Consensus 158 ~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~ 201 (577)
+..+++.+.+...... --.+....|++.|+|.|-.+..+..
T Consensus 184 e~~~il~~~~~~~~~~---~~~~~~~~ia~~~~G~pR~a~~~l~ 224 (328)
T PRK00080 184 ELEKIVKRSARILGVE---IDEEGALEIARRSRGTPRIANRLLR 224 (328)
T ss_pred HHHHHHHHHHHHcCCC---cCHHHHHHHHHHcCCCchHHHHHHH
Confidence 9999999887654322 2236788999999999965554444
No 75
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.32 E-value=0.00036 Score=74.25 Aligned_cols=110 Identities=23% Similarity=0.169 Sum_probs=58.8
Q ss_pred CCCCccEEeCccCC-CCCcc-hhhcCCCCcccEEEccCC-CCCccc----chhhhcCcCCCEEeccCCC-CCccc-ccc-
Q 037229 296 TSPQLLTLFLNINP-LSMIG-GDLFQFKPCLKVLNLSNS-PCLEKL----PSRISRLVSLQHLDLSSSG-ILELP-KEL- 365 (577)
Q Consensus 296 ~~~~Lr~L~l~~~~-~~~~~-~~~~~~l~~L~~L~L~~~-~~l~~l----p~~i~~l~~L~~L~L~~~~-i~~lp-~~i- 365 (577)
.++.|+.+.+.++. +.... ..+...++.|+.|+++++ ..+... ......+.+|+.|+++++. +...- ..+
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 36777777777665 33211 223566777888877762 111111 1223345677777777765 33211 111
Q ss_pred cCCCcCcEecccccccccccch-HHhcCCCCCcEEEeeeec
Q 037229 366 GFLGNLACLNLENTSSHGTITR-QLRSNFSKPQVLRMFRFY 405 (577)
Q Consensus 366 ~~L~~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~ 405 (577)
..+++|++|.+.+|..++...- .+..++++|++|++.+|.
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 1256777777777744332221 123456777777777775
No 76
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.11 E-value=0.002 Score=35.79 Aligned_cols=18 Identities=33% Similarity=0.639 Sum_probs=8.1
Q ss_pred CCEEeccCCCCCcccccc
Q 037229 348 LQHLDLSSSGILELPKEL 365 (577)
Q Consensus 348 L~~L~L~~~~i~~lp~~i 365 (577)
|++|+|++|.++.+|++|
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 444444444444444443
No 77
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=96.10 E-value=0.2 Score=49.85 Aligned_cols=159 Identities=13% Similarity=0.125 Sum_probs=99.1
Q ss_pred CCCccccHHHHHHHHHHhhcCCCceEEEEEeccch----hHHHHHHHhCCCc-----ch---h-----ccCCHHHHHHHH
Q 037229 31 SDLTVGLESTFDQVWSCLVEEEQVGIIGLYGMEGW----IQEQIRRKLGLVD-----DL---W-----ARKGLEEKAMNI 93 (577)
Q Consensus 31 ~~~~vGr~~~~~~i~~~L~~~~~~~vv~I~G~gGw----~~~~i~~~l~~~~-----~~---~-----~~~~~~~~~~~l 93 (577)
.++++|-+..++.+.+++..+.-....-++|+.|. +.+.++..+.... .+ . .....+++.+ +
T Consensus 3 ~~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~-~ 81 (313)
T PRK05564 3 FHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRN-I 81 (313)
T ss_pred hhhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHH-H
Confidence 36789999999999999987544567788999994 4445555442110 00 0 1123334333 3
Q ss_pred HHhcc------ccEEEEEecC--CChhhhcccCCCCCCCCCCcEEEEEeCchhhh-hc-CCCCceEecCCCCHHHHHHHH
Q 037229 94 FGILS------KEFVLCWMMC--GSELILTQMGVPVPNPKRMSKVLFTTRFVEVY-GH-KEADEMFRMECLRHEEAWKLF 163 (577)
Q Consensus 94 ~~~L~------kr~LlVLDdv--~~~~~~~~l~~~~~~~~~gsrIivTTR~~~v~-~~-~~~~~~~~l~~L~~~~~~~Lf 163 (577)
.+.+. ++=++|+||+ ++...++.+...+.....++.+|++|.+.+.. .. ..-...+++.+++.++....+
T Consensus 82 ~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l 161 (313)
T PRK05564 82 IEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFI 161 (313)
T ss_pred HHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHH
Confidence 33222 3335666655 44567888877777667789999888765432 11 122468899999999988777
Q ss_pred HHhhCCCCCCCCCChhHHHHHHHHHcCCCchHHH
Q 037229 164 QMKVGKETMDDHSDIPKLVEIVTKECGGLPLVLV 197 (577)
Q Consensus 164 ~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 197 (577)
...+.+. -.+.+..++..++|.|..+.
T Consensus 162 ~~~~~~~-------~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 162 SYKYNDI-------KEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred HHHhcCC-------CHHHHHHHHHHcCCCHHHHH
Confidence 6543211 12346678889999886543
No 78
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=95.77 E-value=0.084 Score=53.87 Aligned_cols=158 Identities=15% Similarity=0.153 Sum_probs=91.8
Q ss_pred CCccccHHHHHHHHHHhhcC------------CCceEEEEEeccc----hhHHHHHHHhCCCcchhc--------cCCHH
Q 037229 32 DLTVGLESTFDQVWSCLVEE------------EQVGIIGLYGMEG----WIQEQIRRKLGLVDDLWA--------RKGLE 87 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~------------~~~~vv~I~G~gG----w~~~~i~~~l~~~~~~~~--------~~~~~ 87 (577)
+++.|+++.+++|.+.+... ...+-+.++|..| .+.+.++.++........ .....
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~g~~~ 201 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIGEGA 201 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhhhHHH
Confidence 57899999999999887532 1245588999999 377777776654321000 00111
Q ss_pred HHHHHHHHhcc--ccEEEEEecCCChh----------------hhcccCCCCC--CCCCCcEEEEEeCchhh-----hhc
Q 037229 88 EKAMNIFGILS--KEFVLCWMMCGSEL----------------ILTQMGVPVP--NPKRMSKVLFTTRFVEV-----YGH 142 (577)
Q Consensus 88 ~~~~~l~~~L~--kr~LlVLDdv~~~~----------------~~~~l~~~~~--~~~~gsrIivTTR~~~v-----~~~ 142 (577)
.....+.+..+ ...+|++||++... .+..+...+. ....+.+||.||...+. ...
T Consensus 202 ~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~ 281 (364)
T TIGR01242 202 RLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRP 281 (364)
T ss_pred HHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCc
Confidence 12222333333 45799999996531 1222221121 11235778888875433 222
Q ss_pred CCCCceEecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCc
Q 037229 143 KEADEMFRMECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLP 193 (577)
Q Consensus 143 ~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP 193 (577)
...+..+++...+.++..++|..++.........+ ...+++.+.|+.
T Consensus 282 grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 282 GRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred ccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCC
Confidence 22356789999999999999998886543222122 345666777764
No 79
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.63 E-value=0.13 Score=48.39 Aligned_cols=160 Identities=11% Similarity=0.038 Sum_probs=89.7
Q ss_pred ccHHHHHHHHHHhhcCCCceEEEEEeccc----hhHHHHHHHhCCCcchhccCCHHHHHH---HHHHhccccEEEEEecC
Q 037229 36 GLESTFDQVWSCLVEEEQVGIIGLYGMEG----WIQEQIRRKLGLVDDLWARKGLEEKAM---NIFGILSKEFVLCWMMC 108 (577)
Q Consensus 36 Gr~~~~~~i~~~L~~~~~~~vv~I~G~gG----w~~~~i~~~l~~~~~~~~~~~~~~~~~---~l~~~L~kr~LlVLDdv 108 (577)
+.+..++.+.+++.. .....+-|+|..| .+.+.+..+........-..+...+.. .+.+.+.+.-+||+||+
T Consensus 21 ~~~~~~~~l~~~~~~-~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~lLvIDdi 99 (226)
T TIGR03420 21 GNAELLAALRQLAAG-KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQADPEVLEGLEQADLVCLDDV 99 (226)
T ss_pred CcHHHHHHHHHHHhc-CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhHHHHHhhcccCCEEEEeCh
Confidence 356677777777654 4556788999999 355555554431111111122222222 23333443348999999
Q ss_pred CChh---hh-cccCCCCCC-CCCCcEEEEEeCchh---------hhhcCCCCceEecCCCCHHHHHHHHHHhhCCCCCCC
Q 037229 109 GSEL---IL-TQMGVPVPN-PKRMSKVLFTTRFVE---------VYGHKEADEMFRMECLRHEEAWKLFQMKVGKETMDD 174 (577)
Q Consensus 109 ~~~~---~~-~~l~~~~~~-~~~gsrIivTTR~~~---------v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~ 174 (577)
.... .| +.+...+.. ...+.+||+||+... +...+.....+++.+++.++...++...+-....
T Consensus 100 ~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~-- 177 (226)
T TIGR03420 100 EAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGL-- 177 (226)
T ss_pred hhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCC--
Confidence 7542 22 233332221 123457889887432 2222223457899999999999988875532221
Q ss_pred CCChhHHHHHHHHHcCCCchHHHHH
Q 037229 175 HSDIPKLVEIVTKECGGLPLVLVTT 199 (577)
Q Consensus 175 ~~~~~~~~~~i~~~c~glPLai~~~ 199 (577)
.--.+....+++.+.|.|..+..+
T Consensus 178 -~~~~~~l~~L~~~~~gn~r~L~~~ 201 (226)
T TIGR03420 178 -QLPDEVADYLLRHGSRDMGSLMAL 201 (226)
T ss_pred -CCCHHHHHHHHHhccCCHHHHHHH
Confidence 112355677777888888776554
No 80
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.34 E-value=0.0067 Score=33.61 Aligned_cols=22 Identities=41% Similarity=0.578 Sum_probs=16.7
Q ss_pred cccEEEccCCCCCcccchhhhcC
Q 037229 323 CLKVLNLSNSPCLEKLPSRISRL 345 (577)
Q Consensus 323 ~L~~L~L~~~~~l~~lp~~i~~l 345 (577)
+|++||+++| .++.+|++|++|
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSS-EESEEGTTTTT-
T ss_pred CccEEECCCC-cCEeCChhhcCC
Confidence 4788888888 888888776643
No 81
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=95.26 E-value=0.31 Score=48.65 Aligned_cols=161 Identities=12% Similarity=0.085 Sum_probs=95.1
Q ss_pred CCccccHHHHHHHHHHhhcCCCceEEEEEeccch----hHHHHHHHhCCCcch-----h---ccCCHHHHHHHHHHhcc-
Q 037229 32 DLTVGLESTFDQVWSCLVEEEQVGIIGLYGMEGW----IQEQIRRKLGLVDDL-----W---ARKGLEEKAMNIFGILS- 98 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~~~~~vv~I~G~gGw----~~~~i~~~l~~~~~~-----~---~~~~~~~~~~~l~~~L~- 98 (577)
++++|+++.++.+..++.. .....+-++|..|. +.+.++.++...... . +....+.....+.+...
T Consensus 17 ~~~~g~~~~~~~l~~~i~~-~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~ 95 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKE-KNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGIDVIRNKIKEFART 95 (319)
T ss_pred HHhcCcHHHHHHHHHHHhC-CCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccchHHHHHHHHHHHhc
Confidence 6789999999999999877 44445789999994 666666665322110 0 11122222233333322
Q ss_pred ------ccEEEEEecCCCh--hhhcccCCCCCCCCCCcEEEEEeCch-hhhhc-CCCCceEecCCCCHHHHHHHHHHhhC
Q 037229 99 ------KEFVLCWMMCGSE--LILTQMGVPVPNPKRMSKVLFTTRFV-EVYGH-KEADEMFRMECLRHEEAWKLFQMKVG 168 (577)
Q Consensus 99 ------kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~~-~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~ 168 (577)
.+-++++|++... .....+...+......+++|+++... .+... ......+++.+++.++....+...+.
T Consensus 96 ~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~ 175 (319)
T PRK00440 96 APVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAE 175 (319)
T ss_pred CCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHH
Confidence 2458999998653 23444443343333456677766432 22111 11234688999999998888887765
Q ss_pred CCCCCCCCChhHHHHHHHHHcCCCchHH
Q 037229 169 KETMDDHSDIPKLVEIVTKECGGLPLVL 196 (577)
Q Consensus 169 ~~~~~~~~~~~~~~~~i~~~c~glPLai 196 (577)
..... --.+....+++.++|-+-.+
T Consensus 176 ~~~~~---i~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 176 NEGIE---ITDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred HcCCC---CCHHHHHHHHHHcCCCHHHH
Confidence 43311 12456778888999876543
No 82
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.10 E-value=0.016 Score=54.02 Aligned_cols=83 Identities=23% Similarity=0.231 Sum_probs=45.4
Q ss_pred cCCCCcccEEEccCCCCCcccchhhhcCcCCCEEeccCC--CCC-cccccccCCCcCcEeccccccccc---ccchHHhc
Q 037229 318 FQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSSS--GIL-ELPKELGFLGNLACLNLENTSSHG---TITRQLRS 391 (577)
Q Consensus 318 ~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~--~i~-~lp~~i~~L~~L~~L~l~~~~~l~---~lp~~~i~ 391 (577)
...+..|..|++.++ .++.+. .+-.|++|++|.++.| .+. .++....++++|++|++++| .++ +++. +.
T Consensus 39 ~d~~~~le~ls~~n~-gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~p--l~ 113 (260)
T KOG2739|consen 39 TDEFVELELLSVINV-GLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRP--LK 113 (260)
T ss_pred cccccchhhhhhhcc-ceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccch--hh
Confidence 334455555555555 444332 2235667777777776 222 34444445577777777766 333 3333 45
Q ss_pred CCCCCcEEEeeeec
Q 037229 392 NFSKPQVLRMFRFY 405 (577)
Q Consensus 392 ~l~~L~~L~l~~~~ 405 (577)
.+.+|..|++++|.
T Consensus 114 ~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 114 ELENLKSLDLFNCS 127 (260)
T ss_pred hhcchhhhhcccCC
Confidence 56666666666665
No 83
>PRK08727 hypothetical protein; Validated
Probab=95.05 E-value=0.35 Score=45.85 Aligned_cols=159 Identities=9% Similarity=-0.050 Sum_probs=87.0
Q ss_pred CCccc-cHHHHHHHHHHhhcCCCceEEEEEeccc----hhHHHHHHHhCCCcchhccCCHHHHHHHHHHhcc---ccEEE
Q 037229 32 DLTVG-LESTFDQVWSCLVEEEQVGIIGLYGMEG----WIQEQIRRKLGLVDDLWARKGLEEKAMNIFGILS---KEFVL 103 (577)
Q Consensus 32 ~~~vG-r~~~~~~i~~~L~~~~~~~vv~I~G~gG----w~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~---kr~Ll 103 (577)
+++|+ -......+..+... .....+.|+|..| .+...+..++..........+..+....+.+.+. +--+|
T Consensus 19 ~~f~~~~~n~~~~~~~~~~~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~l~~~dlL 97 (233)
T PRK08727 19 DSYIAAPDGLLAQLQALAAG-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGRLRDALEALEGRSLV 97 (233)
T ss_pred hhccCCcHHHHHHHHHHHhc-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhhHHHHHHHHhcCCEE
Confidence 34544 34444444333333 3335689999999 3455554443222111122233444444444444 44599
Q ss_pred EEecCCCh---hhhcc-cCCCCCC-CCCCcEEEEEeCc---------hhhhhcCCCCceEecCCCCHHHHHHHHHHhhCC
Q 037229 104 CWMMCGSE---LILTQ-MGVPVPN-PKRMSKVLFTTRF---------VEVYGHKEADEMFRMECLRHEEAWKLFQMKVGK 169 (577)
Q Consensus 104 VLDdv~~~---~~~~~-l~~~~~~-~~~gsrIivTTR~---------~~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~ 169 (577)
|+||+... ..|.. +...+.. ..+|..||+|++. .++...+.....+++++++.++-.+++.+++..
T Consensus 98 iIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~ 177 (233)
T PRK08727 98 ALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQR 177 (233)
T ss_pred EEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHH
Confidence 99999643 22322 2221111 1235679999884 222333334568899999999999999987754
Q ss_pred CCCCCCCChhHHHHHHHHHcCCCch
Q 037229 170 ETMDDHSDIPKLVEIVTKECGGLPL 194 (577)
Q Consensus 170 ~~~~~~~~~~~~~~~i~~~c~glPL 194 (577)
... .--++....+++.+.|-.-
T Consensus 178 ~~l---~l~~e~~~~La~~~~rd~r 199 (233)
T PRK08727 178 RGL---ALDEAAIDWLLTHGERELA 199 (233)
T ss_pred cCC---CCCHHHHHHHHHhCCCCHH
Confidence 331 1224566677777876543
No 84
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.97 E-value=0.0037 Score=58.30 Aligned_cols=84 Identities=18% Similarity=0.100 Sum_probs=49.3
Q ss_pred CCcccEEEccCCCCCc-----ccchhhhcCcCCCEEeccCCC----CCcccc-------cccCCCcCcEecccccccccc
Q 037229 321 KPCLKVLNLSNSPCLE-----KLPSRISRLVSLQHLDLSSSG----ILELPK-------ELGFLGNLACLNLENTSSHGT 384 (577)
Q Consensus 321 l~~L~~L~L~~~~~l~-----~lp~~i~~l~~L~~L~L~~~~----i~~lp~-------~i~~L~~L~~L~l~~~~~l~~ 384 (577)
+..+..++||+| .+. .+...|.+-.+|+..+++.-. ..++|+ .+-++++|+..+|+.|..-..
T Consensus 29 ~d~~~evdLSGN-tigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 29 MDELVEVDLSGN-TIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hcceeEEeccCC-cccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 556666677766 443 233344555666666665521 113333 345677788888887744334
Q ss_pred cch---HHhcCCCCCcEEEeeeec
Q 037229 385 ITR---QLRSNFSKPQVLRMFRFY 405 (577)
Q Consensus 385 lp~---~~i~~l~~L~~L~l~~~~ 405 (577)
.|. ..|+.-+.|.||.+++|.
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCC
Confidence 443 236677788888888886
No 85
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=94.90 E-value=0.35 Score=53.48 Aligned_cols=170 Identities=13% Similarity=0.045 Sum_probs=92.9
Q ss_pred CCccccHHHHHHHHHHhhcC----CCceEEEEEeccc--------h--------------------------------hH
Q 037229 32 DLTVGLESTFDQVWSCLVEE----EQVGIIGLYGMEG--------W--------------------------------IQ 67 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~----~~~~vv~I~G~gG--------w--------------------------------~~ 67 (577)
+.++|||+++++|...|... ..-.++-|+|..| + +.
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIY 834 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAY 834 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHH
Confidence 68999999999999988764 2335778999999 1 44
Q ss_pred HHHHHHhCCCcchhccCCHHHHHHHHHHhcc---c-cEEEEEecCCChh--hhcccCCCCCC-CCCCcEEEE--EeCchh
Q 037229 68 EQIRRKLGLVDDLWARKGLEEKAMNIFGILS---K-EFVLCWMMCGSEL--ILTQMGVPVPN-PKRMSKVLF--TTRFVE 138 (577)
Q Consensus 68 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~---k-r~LlVLDdv~~~~--~~~~l~~~~~~-~~~gsrIiv--TTR~~~ 138 (577)
+.|.+++..... ....+.......+...+. + ..+||||+|.... .-+.|..-|.+ ...+++|++ .|.+.+
T Consensus 835 qvI~qqL~g~~P-~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlD 913 (1164)
T PTZ00112 835 QVLYKQLFNKKP-PNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMD 913 (1164)
T ss_pred HHHHHHHcCCCC-CccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchh
Confidence 455555532221 122233345555555552 2 3589999997531 11111111111 123556554 232222
Q ss_pred --------hhhcCCCCceEecCCCCHHHHHHHHHHhhCCCC-CCCCCChhHHHHHHHHHcCCCchHHHHHHHHH
Q 037229 139 --------VYGHKEADEMFRMECLRHEEAWKLFQMKVGKET-MDDHSDIPKLVEIVTKECGGLPLVLVTTARAM 203 (577)
Q Consensus 139 --------v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~-~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L 203 (577)
+...++ ...+...+.+.++-.+++..++.... .-.+..++-+|..++..-|-.-.|+..+-.+.
T Consensus 914 LperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 914 LPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred cchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 112222 12356789999999999999885321 11222333344444444444666776665444
No 86
>PF13173 AAA_14: AAA domain
Probab=94.89 E-value=0.07 Score=45.27 Aligned_cols=105 Identities=10% Similarity=-0.028 Sum_probs=67.6
Q ss_pred ceEEEEEeccc----hhHHHHHHHhCCCcc--hhccCCHHH-------HHHHHHHhcc-ccEEEEEecCCChhhhcccCC
Q 037229 54 VGIIGLYGMEG----WIQEQIRRKLGLVDD--LWARKGLEE-------KAMNIFGILS-KEFVLCWMMCGSELILTQMGV 119 (577)
Q Consensus 54 ~~vv~I~G~gG----w~~~~i~~~l~~~~~--~~~~~~~~~-------~~~~l~~~L~-kr~LlVLDdv~~~~~~~~l~~ 119 (577)
-+++.|.|+-| ++.+++++++..... -.+-.+... ..+.+.+... ++.++++|+|-...+|.....
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iDEiq~~~~~~~~lk 81 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPDLLEYFLELIKPGKKYIFIDEIQYLPDWEDALK 81 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhhhHHHHHHhhccCCcEEEEehhhhhccHHHHHH
Confidence 36888999988 577777776641110 001111111 3344555555 678999999988888877766
Q ss_pred CCCCCCCCcEEEEEeCchhhhhcC------CCCceEecCCCCHHH
Q 037229 120 PVPNPKRMSKVLFTTRFVEVYGHK------EADEMFRMECLRHEE 158 (577)
Q Consensus 120 ~~~~~~~gsrIivTTR~~~v~~~~------~~~~~~~l~~L~~~~ 158 (577)
.+.+.....+|++|+.+......- +-...++|.+|+-.|
T Consensus 82 ~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 82 FLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred HHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 666555668999999987775331 122467888888765
No 87
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=94.69 E-value=0.67 Score=47.07 Aligned_cols=164 Identities=11% Similarity=0.090 Sum_probs=97.6
Q ss_pred CCccccHHHHHHHHHHhhcCCCceEEEEEeccch----hHHHHHHHhCCCcc---------------------h---hc-
Q 037229 32 DLTVGLESTFDQVWSCLVEEEQVGIIGLYGMEGW----IQEQIRRKLGLVDD---------------------L---WA- 82 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~~~~~vv~I~G~gGw----~~~~i~~~l~~~~~---------------------~---~~- 82 (577)
+++||.+..++.+.+++..+.-...+-++|..|+ +.+.+++.+..... + .+
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~~~ 93 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEIDA 93 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeec
Confidence 6789999999999999987544457789999995 44455555432110 0 00
Q ss_pred --cCCHHHHHHHHHHhcc------ccEEEEEecCCCh--hhhcccCCCCCCCCCCcEEEEEeCchh-hhhcC-CCCceEe
Q 037229 83 --RKGLEEKAMNIFGILS------KEFVLCWMMCGSE--LILTQMGVPVPNPKRMSKVLFTTRFVE-VYGHK-EADEMFR 150 (577)
Q Consensus 83 --~~~~~~~~~~l~~~L~------kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~~~-v~~~~-~~~~~~~ 150 (577)
..+.+. .+.+.+.+. ++-++|+|++... ...+.+...+......+.+|++|.+.+ +.... .....++
T Consensus 94 ~~~~~~~~-~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~ 172 (355)
T TIGR02397 94 ASNNGVDD-IREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRFD 172 (355)
T ss_pred cccCCHHH-HHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhheeEEE
Confidence 112222 222333222 4458899998543 345555444443344566666765443 32221 2235788
Q ss_pred cCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCchHHHHH
Q 037229 151 MECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLPLVLVTT 199 (577)
Q Consensus 151 l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 199 (577)
+.+++.++..+.+...+-...... -.+....+++.++|-|..+...
T Consensus 173 ~~~~~~~~l~~~l~~~~~~~g~~i---~~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 173 FKRIPLEDIVERLKKILDKEGIKI---EDEALELIARAADGSLRDALSL 218 (355)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCChHHHHHH
Confidence 899999998888887664332111 1366778889999988655443
No 88
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.44 E-value=0.024 Score=29.10 Aligned_cols=15 Identities=40% Similarity=0.612 Sum_probs=5.4
Q ss_pred CCCEEeccCCCCCcc
Q 037229 347 SLQHLDLSSSGILEL 361 (577)
Q Consensus 347 ~L~~L~L~~~~i~~l 361 (577)
+|++|++++|+++++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344444444444443
No 89
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=94.22 E-value=0.87 Score=46.20 Aligned_cols=161 Identities=8% Similarity=-0.023 Sum_probs=94.3
Q ss_pred CCCccccHHHHHHHHHHhhcCCCceEEEEEeccch--------hHHHHHHHhC-C-------------C--cc-------
Q 037229 31 SDLTVGLESTFDQVWSCLVEEEQVGIIGLYGMEGW--------IQEQIRRKLG-L-------------V--DD------- 79 (577)
Q Consensus 31 ~~~~vGr~~~~~~i~~~L~~~~~~~vv~I~G~gGw--------~~~~i~~~l~-~-------------~--~~------- 79 (577)
..++||-+..++.+.+.+..+.-..-+-++|+.|. +.+.++.+-. . . ..
T Consensus 18 ~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~~ 97 (365)
T PRK07471 18 TTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIAA 97 (365)
T ss_pred hhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHHc
Confidence 36799999999999999988533446778888882 3333332110 0 0 00
Q ss_pred -----------hh-c-------cCCHHHHHHHHHHhcc------ccEEEEEecCCCh--hhhcccCCCCCCCCCCcEEEE
Q 037229 80 -----------LW-A-------RKGLEEKAMNIFGILS------KEFVLCWMMCGSE--LILTQMGVPVPNPKRMSKVLF 132 (577)
Q Consensus 80 -----------~~-~-------~~~~~~~~~~l~~~L~------kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiv 132 (577)
.. + ....++ ++.+.+++. .+-++|+||+... .....+...+-.-..+..+|+
T Consensus 98 ~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL 176 (365)
T PRK07471 98 GAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLL 176 (365)
T ss_pred cCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEE
Confidence 00 0 011222 334444444 3458999999754 334444444433334566666
Q ss_pred EeCchh-hhhcCC-CCceEecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCchHHHHH
Q 037229 133 TTRFVE-VYGHKE-ADEMFRMECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLPLVLVTT 199 (577)
Q Consensus 133 TTR~~~-v~~~~~-~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 199 (577)
+|.+.+ +..... -...+.+.+++.++..+++........ .+....+++.++|.|.....+
T Consensus 177 ~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~-------~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 177 VSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLP-------DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred EECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCC-------HHHHHHHHHHcCCCHHHHHHH
Confidence 666553 332222 245889999999999999987542211 122267889999999865443
No 90
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.12 E-value=0.12 Score=43.70 Aligned_cols=101 Identities=17% Similarity=0.224 Sum_probs=42.2
Q ss_pred CCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccch-hhhcCcCCCEEeccCCCCCccccc-ccCCCcCc
Q 037229 295 PTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPS-RISRLVSLQHLDLSSSGILELPKE-LGFLGNLA 372 (577)
Q Consensus 295 ~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~ 372 (577)
..+.+|+.+.+.. .+..++...|..+..|+.+.+... +..++. .+.....|+.+.+.. .+..++.. +..+++|+
T Consensus 9 ~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 9 YNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred hCCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 3445566665543 345555555666666666666543 444432 344454566666644 44444333 34456666
Q ss_pred EecccccccccccchHHhcCCCCCcEEEee
Q 037229 373 CLNLENTSSHGTITRQLRSNFSKPQVLRMF 402 (577)
Q Consensus 373 ~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~ 402 (577)
.+++..+ +..++...+.+. +|+.+.+.
T Consensus 85 ~i~~~~~--~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 85 NIDIPSN--ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp EEEETTT---BEEHTTTTTT--T--EEE-T
T ss_pred ccccCcc--ccEEchhhhcCC-CceEEEEC
Confidence 6666432 344554445554 55555544
No 91
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=94.11 E-value=0.93 Score=46.22 Aligned_cols=136 Identities=10% Similarity=-0.015 Sum_probs=82.5
Q ss_pred CCccccHHHHHHHHHHhhcC---CCceEEEEEeccc----------------h-------------------hHHHHHHH
Q 037229 32 DLTVGLESTFDQVWSCLVEE---EQVGIIGLYGMEG----------------W-------------------IQEQIRRK 73 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~---~~~~vv~I~G~gG----------------w-------------------~~~~i~~~ 73 (577)
..++|||.++..+.+|+... +....+.|.|-.| | +++.|.+.
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~ 229 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSS 229 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHH
Confidence 67899999999999999876 4455566666666 2 77777777
Q ss_pred hCCCcchhccCCHHHHHHHHHHhcc---ccEEEEEecCCChh--hhcccCCCCCC-CCCCcEEEEEeCchhh--------
Q 037229 74 LGLVDDLWARKGLEEKAMNIFGILS---KEFVLCWMMCGSEL--ILTQMGVPVPN-PKRMSKVLFTTRFVEV-------- 139 (577)
Q Consensus 74 l~~~~~~~~~~~~~~~~~~l~~~L~---kr~LlVLDdv~~~~--~~~~l~~~~~~-~~~gsrIivTTR~~~v-------- 139 (577)
+..... ......+..+.+.+... +-+++|+|.++.-. .-..+...|-| .-.+||+|+----..+
T Consensus 230 ~~q~~~--s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~Lp 307 (529)
T KOG2227|consen 230 LLQDLV--SPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLP 307 (529)
T ss_pred HHHHhc--CCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhh
Confidence 721110 12222455666666666 36899999987541 12223333322 2346666654221111
Q ss_pred -hhc--CCCCceEecCCCCHHHHHHHHHHhhCC
Q 037229 140 -YGH--KEADEMFRMECLRHEEAWKLFQMKVGK 169 (577)
Q Consensus 140 -~~~--~~~~~~~~l~~L~~~~~~~Lf~~~a~~ 169 (577)
... .-........+.+.++-.++|..+.-.
T Consensus 308 rL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~ 340 (529)
T KOG2227|consen 308 RLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSE 340 (529)
T ss_pred hhhhccCCCCceeeecCCCHHHHHHHHHHHHhc
Confidence 111 112356788899999999999988743
No 92
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.96 E-value=1.1 Score=45.58 Aligned_cols=161 Identities=13% Similarity=0.091 Sum_probs=97.8
Q ss_pred CCccccHHHHHHHHHHhhcCCCceEEEEEeccch----hHHHHHHHhCCCcc------------------------hhc-
Q 037229 32 DLTVGLESTFDQVWSCLVEEEQVGIIGLYGMEGW----IQEQIRRKLGLVDD------------------------LWA- 82 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~~~~~vv~I~G~gGw----~~~~i~~~l~~~~~------------------------~~~- 82 (577)
++++|-+..++.+.+.+..+.-...+-++|..|. +.+.+++.+..... ..+
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~ 95 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDA 95 (363)
T ss_pred hhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEecc
Confidence 6799999999999998887544456788999993 55555555532100 000
Q ss_pred --cCCHHHHHHHHHHhcc------ccEEEEEecCCChh--hhcccCCCCCCCCCCcEEEEEeCch-hhhhcC-CCCceEe
Q 037229 83 --RKGLEEKAMNIFGILS------KEFVLCWMMCGSEL--ILTQMGVPVPNPKRMSKVLFTTRFV-EVYGHK-EADEMFR 150 (577)
Q Consensus 83 --~~~~~~~~~~l~~~L~------kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gsrIivTTR~~-~v~~~~-~~~~~~~ 150 (577)
....++ .+.+.+.+. ++-++|+|++.... .++.+...+.......++|++|.+. .+.... +-...++
T Consensus 96 ~~~~~v~~-ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SRc~~~~ 174 (363)
T PRK14961 96 ASRTKVEE-MREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQFK 174 (363)
T ss_pred cccCCHHH-HHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhhceEEe
Confidence 122233 233333332 34589999997653 4666655554444566777766543 332221 2236889
Q ss_pred cCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCchHH
Q 037229 151 MECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLPLVL 196 (577)
Q Consensus 151 l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai 196 (577)
+.+++.++..+.+...+..... .--++....|++.++|-|-.+
T Consensus 175 ~~~l~~~el~~~L~~~~~~~g~---~i~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 175 LKIISEEKIFNFLKYILIKESI---DTDEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred CCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 9999999988887776543221 112356677888999977533
No 93
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.90 E-value=0.17 Score=42.63 Aligned_cols=112 Identities=21% Similarity=0.305 Sum_probs=60.9
Q ss_pred eeEEEEecCCCCCCcCC--CCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccch-hhhcCcCCCEEecc
Q 037229 278 TRRVSLKENKIGDLWET--PTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPS-RISRLVSLQHLDLS 354 (577)
Q Consensus 278 ~r~l~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~L~ 354 (577)
++.+.+.. .+..+... ..+.+|+.+.+..+ +..++...|..++.|+.+.+.. .+..++. .+....+|+.+.+.
T Consensus 14 l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 14 LESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp --EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TTECEEEET
T ss_pred CCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc--cccccccccccccccccccccC
Confidence 55555543 34444433 67778999999875 8888888899998999999965 3555543 56678999999997
Q ss_pred CCCCCccccc-ccCCCcCcEecccccccccccchHHhcCCCCCc
Q 037229 355 SSGILELPKE-LGFLGNLACLNLENTSSHGTITRQLRSNFSKPQ 397 (577)
Q Consensus 355 ~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~ 397 (577)
.+ +..++.. +.+. +|+.+.+.. .+..++...+.++++|+
T Consensus 90 ~~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 90 SN-ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTKLK 129 (129)
T ss_dssp TT--BEEHTTTTTT--T--EEE-TT--B-SS----GGG------
T ss_pred cc-ccEEchhhhcCC-CceEEEECC--CccEECCccccccccCC
Confidence 64 7777665 5665 899888875 45777777677777764
No 94
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=93.89 E-value=0.81 Score=50.00 Aligned_cols=111 Identities=13% Similarity=-0.020 Sum_probs=66.8
Q ss_pred HHHHHHHhcc-ccEEEEEecCCCh--hhhcccCCCCCCCCCCcEEEE--EeCchhh-hhcC-CCCceEecCCCCHHHHHH
Q 037229 89 KAMNIFGILS-KEFVLCWMMCGSE--LILTQMGVPVPNPKRMSKVLF--TTRFVEV-YGHK-EADEMFRMECLRHEEAWK 161 (577)
Q Consensus 89 ~~~~l~~~L~-kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiv--TTR~~~v-~~~~-~~~~~~~l~~L~~~~~~~ 161 (577)
.+..+.+.+. ++++++-|+.|.. ..|+.++..+....+...|++ ||++... .... .....+.+.+++.+|.++
T Consensus 281 ~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~ 360 (615)
T TIGR02903 281 LQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIAL 360 (615)
T ss_pred HHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHH
Confidence 4667777777 8888887766654 347777766666555555655 5664432 1111 112367889999999999
Q ss_pred HHHHhhCCCCCCCCCChhHHHHHHHHHcCCCchHHHHHHHH
Q 037229 162 LFQMKVGKETMDDHSDIPKLVEIVTKECGGLPLVLVTTARA 202 (577)
Q Consensus 162 Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~ 202 (577)
++.+.+-...... -.+....|.+++..-+-|+..++..
T Consensus 361 Il~~~a~~~~v~l---s~eal~~L~~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 361 IVLNAAEKINVHL---AAGVEELIARYTIEGRKAVNILADV 398 (615)
T ss_pred HHHHHHHHcCCCC---CHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 9998765322111 1344455555554445566555433
No 95
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=93.83 E-value=1 Score=45.26 Aligned_cols=161 Identities=9% Similarity=0.004 Sum_probs=90.2
Q ss_pred CCccccHHHHHHHHHHhhcCCCceEEEEEeccc----hhHHHHHHHhCCCc---c--hhccCC-----------------
Q 037229 32 DLTVGLESTFDQVWSCLVEEEQVGIIGLYGMEG----WIQEQIRRKLGLVD---D--LWARKG----------------- 85 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~~~~~vv~I~G~gG----w~~~~i~~~l~~~~---~--~~~~~~----------------- 85 (577)
++++|++..++.+.+++.. +....+-++|..| .+.+.+++.+.... . .....+
T Consensus 15 ~~~~g~~~~~~~L~~~~~~-~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 93 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDS-PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVEDPRFAH 93 (337)
T ss_pred HHhcCCHHHHHHHHHHHhC-CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcCcchhh
Confidence 6789999999999998877 4444577999999 24444444432111 0 000000
Q ss_pred -----------HHHHHHHHH-H---hc--c-ccEEEEEecCCCh--hhhcccCCCCCCCCCCcEEEEEeCchh-hhhcC-
Q 037229 86 -----------LEEKAMNIF-G---IL--S-KEFVLCWMMCGSE--LILTQMGVPVPNPKRMSKVLFTTRFVE-VYGHK- 143 (577)
Q Consensus 86 -----------~~~~~~~l~-~---~L--~-kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~~~-v~~~~- 143 (577)
.....+.+. . .. . .+-+||+||+... .....+...+.......++|+||.... +....
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~ 173 (337)
T PRK12402 94 FLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIR 173 (337)
T ss_pred hhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhc
Confidence 011111111 1 11 1 3448999999654 223334333333334567887775432 22211
Q ss_pred CCCceEecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCchHH
Q 037229 144 EADEMFRMECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLPLVL 196 (577)
Q Consensus 144 ~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai 196 (577)
.....+++.+++.++....+...+...... --.+....+++.++|-+-.+
T Consensus 174 sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~---~~~~al~~l~~~~~gdlr~l 223 (337)
T PRK12402 174 SRCLPLFFRAPTDDELVDVLESIAEAEGVD---YDDDGLELIAYYAGGDLRKA 223 (337)
T ss_pred CCceEEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHH
Confidence 223578889999999888888866433311 12456777888888865444
No 96
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.82 E-value=0.0022 Score=58.40 Aligned_cols=84 Identities=18% Similarity=0.128 Sum_probs=71.8
Q ss_pred CCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchhhhcCcCCCEEeccCCCCCcccccccCCCcCcEe
Q 037229 295 PTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSSSGILELPKELGFLGNLACL 374 (577)
Q Consensus 295 ~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L 374 (577)
..+...++|+++.+.+..+... |+.+..|..|+++.+ .+..+|..++++..++.+++..|..+.+|.+++.+++++++
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~n-~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGKN-FSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hccceeeeehhhhhHHHhhccc-hHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchh
Confidence 5567778888888886666665 777888888999988 89999999999999999999999999999999999999999
Q ss_pred cccccc
Q 037229 375 NLENTS 380 (577)
Q Consensus 375 ~l~~~~ 380 (577)
++.++.
T Consensus 117 e~k~~~ 122 (326)
T KOG0473|consen 117 EQKKTE 122 (326)
T ss_pred hhccCc
Confidence 998884
No 97
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=93.79 E-value=2.5 Score=42.88 Aligned_cols=163 Identities=17% Similarity=0.105 Sum_probs=99.9
Q ss_pred CCccccHHHHHHHHHHhhcC---CCceEEEEEeccc----------------------------h-------hHHHHHHH
Q 037229 32 DLTVGLESTFDQVWSCLVEE---EQVGIIGLYGMEG----------------------------W-------IQEQIRRK 73 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~---~~~~vv~I~G~gG----------------------------w-------~~~~i~~~ 73 (577)
+.+.+||++++++...|..- ....-+-|+|..| | +...|+++
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~ 96 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNK 96 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHH
Confidence 56999999999999988764 2223388889998 1 88888888
Q ss_pred hCCCcchhccCCHHHHHHHHHHhcc---ccEEEEEecCCChhh-----hcccCCCCCCCCCCcEEEE--EeCchhhhhcC
Q 037229 74 LGLVDDLWARKGLEEKAMNIFGILS---KEFVLCWMMCGSELI-----LTQMGVPVPNPKRMSKVLF--TTRFVEVYGHK 143 (577)
Q Consensus 74 l~~~~~~~~~~~~~~~~~~l~~~L~---kr~LlVLDdv~~~~~-----~~~l~~~~~~~~~gsrIiv--TTR~~~v~~~~ 143 (577)
++... ....+..+..+.+.+.+. +.+++|||+++.... +-.|....... .++|++ .+-+......+
T Consensus 97 ~~~~p--~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i~n~~~~~~~l 172 (366)
T COG1474 97 LGKVP--LTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAVSNDDKFLDYL 172 (366)
T ss_pred cCCCC--CCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEEEEEeccHHHHHHh
Confidence 86322 245677778888888887 788999999976421 22222222222 444333 33333322222
Q ss_pred --------CCCceEecCCCCHHHHHHHHHHhh---CCCCCCCCCChhHHHHHHHHHcC-CCchHHHHHH
Q 037229 144 --------EADEMFRMECLRHEEAWKLFQMKV---GKETMDDHSDIPKLVEIVTKECG-GLPLVLVTTA 200 (577)
Q Consensus 144 --------~~~~~~~l~~L~~~~~~~Lf~~~a---~~~~~~~~~~~~~~~~~i~~~c~-glPLai~~~g 200 (577)
+.. .+...+-+.++-.+.+..++ |... ...+..-+++..++..-+ ---.|+..+-
T Consensus 173 d~rv~s~l~~~-~I~F~pY~a~el~~Il~~R~~~~~~~~-~~~~~vl~lia~~~a~~~GDAR~aidilr 239 (366)
T COG1474 173 DPRVKSSLGPS-EIVFPPYTAEELYDILRERVEEGFSAG-VIDDDVLKLIAALVAAESGDARKAIDILR 239 (366)
T ss_pred hhhhhhccCcc-eeeeCCCCHHHHHHHHHHHHHhhccCC-CcCccHHHHHHHHHHHcCccHHHHHHHHH
Confidence 222 36788889999999888876 4444 333344444444444444 4455555443
No 98
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=93.72 E-value=0.018 Score=53.93 Aligned_cols=40 Identities=30% Similarity=0.507 Sum_probs=20.7
Q ss_pred cCCCCcccEEEccCCCCCc-ccch----hhhcCcCCCEEeccCCCC
Q 037229 318 FQFKPCLKVLNLSNSPCLE-KLPS----RISRLVSLQHLDLSSSGI 358 (577)
Q Consensus 318 ~~~l~~L~~L~L~~~~~l~-~lp~----~i~~l~~L~~L~L~~~~i 358 (577)
+-+|++|+..+||+| .+. ..|+ .|+.-+.|.+|.|++|.+
T Consensus 88 Llkcp~l~~v~LSDN-Afg~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 88 LLKCPRLQKVDLSDN-AFGSEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred HhcCCcceeeecccc-ccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence 345566666666666 333 2222 244445566666666544
No 99
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.55 E-value=0.0054 Score=65.22 Aligned_cols=214 Identities=18% Similarity=0.169 Sum_probs=125.0
Q ss_pred cCCCCcccEEEccCCCCCcc--cchhhhcCcCCCEEeccCC--CCCcc----cccccCCCcCcEecccccccccccchHH
Q 037229 318 FQFKPCLKVLNLSNSPCLEK--LPSRISRLVSLQHLDLSSS--GILEL----PKELGFLGNLACLNLENTSSHGTITRQL 389 (577)
Q Consensus 318 ~~~l~~L~~L~L~~~~~l~~--lp~~i~~l~~L~~L~L~~~--~i~~l----p~~i~~L~~L~~L~l~~~~~l~~lp~~~ 389 (577)
...++.|+.|.+.++..+.. +-......++|+.|+++++ .+... +.....+.+|+.|++.+|..+.+.--..
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred HhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 45589999999999967775 4456778999999999973 22211 2234456899999999995555444322
Q ss_pred hc-CCCCCcEEEeeeecCcccccccccCCccCcccccccccCCccCceeEEEecCcccccCCCccCccceeeecCCCCCC
Q 037229 390 RS-NFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHLNVFSITLKSSYALQKPNSEHTRSLEVLPLAEMRQ 468 (577)
Q Consensus 390 i~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~l~~~~l~~L~~~~l~~l~~ 468 (577)
+. .+++|++|.+..|... .......-...+++|+.|+++++....-.. +..+ ..++++
T Consensus 264 l~~~c~~L~~L~l~~c~~l------------t~~gl~~i~~~~~~L~~L~l~~c~~~~d~~-----l~~~----~~~c~~ 322 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNL------------TDEGLVSIAERCPSLRELDLSGCHGLTDSG-----LEAL----LKNCPN 322 (482)
T ss_pred HHhhCCCcceEccCCCCcc------------chhHHHHHHHhcCcccEEeeecCccchHHH-----HHHH----HHhCcc
Confidence 43 3889999998888610 122233334567789999999543221111 1111 122444
Q ss_pred CcEEEecc---cCCceEEecc-cCCCCCC--CCC--ccCCCCCcceEeeccCCCcceecCCCcccEEecCCcccc-cccc
Q 037229 469 LDKLHIAF---CTRLQEFEIE-CPGRNLM--DLT--WLIFAPNFRKIDINQSSHMEEIICIDRLRKVSGGYKKIL-KRIY 539 (577)
Q Consensus 469 L~~L~l~~---~~~l~~l~l~-~~~~~l~--~l~--~l~~l~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~~~~l-~~l~ 539 (577)
|+.|.+.. |..++.+.+. |. ... .+. .+..+++|+.+.+..|. ..... ..+.+.+|+.+ ..+.
T Consensus 323 l~~l~~~~~~~c~~l~~~~l~~~~--~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~-----~~~~l~gc~~l~~~l~ 394 (482)
T KOG1947|consen 323 LRELKLLSLNGCPSLTDLSLSGLL--TLTSDDLAELILRSCPKLTDLSLSYCG-ISDLG-----LELSLRGCPNLTESLE 394 (482)
T ss_pred hhhhhhhhcCCCccHHHHHHHHhh--ccCchhHhHHHHhcCCCcchhhhhhhh-ccCcc-----hHHHhcCCcccchHHH
Confidence 44444333 3334433222 11 111 111 34566777777777666 32211 14677788888 5554
Q ss_pred cCCCCCCCcceEeeecCCCCC
Q 037229 540 PDVLPLKNLKGITVSSCPNLK 560 (577)
Q Consensus 540 ~~~~~~~~L~~L~i~~c~~L~ 560 (577)
.....++.|+.|.+..|....
T Consensus 395 ~~~~~~~~l~~L~l~~~~~~t 415 (482)
T KOG1947|consen 395 LRLCRSDSLRVLNLSDCRLVT 415 (482)
T ss_pred HHhccCCccceEecccCcccc
Confidence 444455668999998876554
No 100
>PRK08084 DNA replication initiation factor; Provisional
Probab=93.41 E-value=0.98 Score=42.83 Aligned_cols=160 Identities=13% Similarity=0.109 Sum_probs=86.3
Q ss_pred Ccccc-HHHHHHHHHHhhcCCCceEEEEEeccc----hhHHHHHHHhCCCcchhccCCHHHH---HHHHHHhccccEEEE
Q 037229 33 LTVGL-ESTFDQVWSCLVEEEQVGIIGLYGMEG----WIQEQIRRKLGLVDDLWARKGLEEK---AMNIFGILSKEFVLC 104 (577)
Q Consensus 33 ~~vGr-~~~~~~i~~~L~~~~~~~vv~I~G~gG----w~~~~i~~~l~~~~~~~~~~~~~~~---~~~l~~~L~kr~LlV 104 (577)
.++|- ...+..+.++... .....+.|+|..| .+...+..++..........+.+.. ...+.+.+.+--+|+
T Consensus 24 f~~~~n~~a~~~l~~~~~~-~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~dlli 102 (235)
T PRK08084 24 FYPGDNDSLLAALQNALRQ-EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWFVPEVLEGMEQLSLVC 102 (235)
T ss_pred cccCccHHHHHHHHHHHhC-CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhhhHHHHHHhhhCCEEE
Confidence 34463 3334444444433 4445788999999 3555555544321111111222221 122223333223789
Q ss_pred EecCCCh---hhhcccC-CCCCC-CCCC-cEEEEEeCch---------hhhhcCCCCceEecCCCCHHHHHHHHHHhhCC
Q 037229 105 WMMCGSE---LILTQMG-VPVPN-PKRM-SKVLFTTRFV---------EVYGHKEADEMFRMECLRHEEAWKLFQMKVGK 169 (577)
Q Consensus 105 LDdv~~~---~~~~~l~-~~~~~-~~~g-srIivTTR~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~ 169 (577)
+||+... .+|+... ..+.. ...| .++|+||+.. ++...+....+++++++++++-.+++.+++..
T Consensus 103 iDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~ 182 (235)
T PRK08084 103 IDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARL 182 (235)
T ss_pred EeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHH
Confidence 9999643 3343221 12211 1123 3699998744 33444555679999999999999998886643
Q ss_pred CCCCCCCChhHHHHHHHHHcCCCchHH
Q 037229 170 ETMDDHSDIPKLVEIVTKECGGLPLVL 196 (577)
Q Consensus 170 ~~~~~~~~~~~~~~~i~~~c~glPLai 196 (577)
... .--+++..-+++.+.|-.-++
T Consensus 183 ~~~---~l~~~v~~~L~~~~~~d~r~l 206 (235)
T PRK08084 183 RGF---ELPEDVGRFLLKRLDREMRTL 206 (235)
T ss_pred cCC---CCCHHHHHHHHHhhcCCHHHH
Confidence 321 222467777888888765444
No 101
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.40 E-value=1.1 Score=47.69 Aligned_cols=161 Identities=13% Similarity=0.062 Sum_probs=98.1
Q ss_pred CCccccHHHHHHHHHHhhcCCCceEEEEEeccch----hHHHHHHHhCCCc--------------------ch------h
Q 037229 32 DLTVGLESTFDQVWSCLVEEEQVGIIGLYGMEGW----IQEQIRRKLGLVD--------------------DL------W 81 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~~~~~vv~I~G~gGw----~~~~i~~~l~~~~--------------------~~------~ 81 (577)
++++|-+..++.|..++..+.-...+-++|..|- +.+.++..+.... .. .
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~~ 93 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDAA 93 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEeccc
Confidence 5789999999999998888544456789999993 3333444332100 00 0
Q ss_pred ccCCHHHHHHHHHHhcc------ccEEEEEecCCCh--hhhcccCCCCCCCCCCcEEEEEe-CchhhhhcCC-CCceEec
Q 037229 82 ARKGLEEKAMNIFGILS------KEFVLCWMMCGSE--LILTQMGVPVPNPKRMSKVLFTT-RFVEVYGHKE-ADEMFRM 151 (577)
Q Consensus 82 ~~~~~~~~~~~l~~~L~------kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTT-R~~~v~~~~~-~~~~~~l 151 (577)
.....+. ++.+.+.+. ++-++|+|+++.. ..++.+...+........+|++| ....+..... ....+++
T Consensus 94 ~~~~vd~-iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~~f 172 (504)
T PRK14963 94 SNNSVED-VRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFRF 172 (504)
T ss_pred ccCCHHH-HHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEEEEe
Confidence 1122222 233444332 4568999999754 44666655554444455555555 4444433222 2458999
Q ss_pred CCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCchHH
Q 037229 152 ECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLPLVL 196 (577)
Q Consensus 152 ~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai 196 (577)
.+++.++..+.+.+.+-...... -.+....|++.++|.+--+
T Consensus 173 ~~ls~~el~~~L~~i~~~egi~i---~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 173 RRLTEEEIAGKLRRLLEAEGREA---EPEALQLVARLADGAMRDA 214 (504)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHH
Confidence 99999999999998775443111 2456678889999977433
No 102
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=93.38 E-value=0.85 Score=50.59 Aligned_cols=157 Identities=15% Similarity=0.113 Sum_probs=87.3
Q ss_pred CCccccHHHHH---HHHHHhhcCCCceEEEEEeccch----hHHHHHHHhCCCcchh-----ccCCHHHHHHHHHHhcc-
Q 037229 32 DLTVGLESTFD---QVWSCLVEEEQVGIIGLYGMEGW----IQEQIRRKLGLVDDLW-----ARKGLEEKAMNIFGILS- 98 (577)
Q Consensus 32 ~~~vGr~~~~~---~i~~~L~~~~~~~vv~I~G~gGw----~~~~i~~~l~~~~~~~-----~~~~~~~~~~~l~~~L~- 98 (577)
+++||.+..+. .+.+.+.. +....+-++|++|- +.+.|........... ...+.........+.+.
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~-~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~i~dir~~i~~a~~~l~~ 106 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKA-DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAGVKDLRAEVDRAKERLER 106 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhc-CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhhhhHHHHHHHHHHHHHhhh
Confidence 56899988874 45455555 56666789999993 4445544443221100 01111222233333333
Q ss_pred --ccEEEEEecCCC--hhhhcccCCCCCCCCCCcEEEEEe--Cchh--hhh-cCCCCceEecCCCCHHHHHHHHHHhhCC
Q 037229 99 --KEFVLCWMMCGS--ELILTQMGVPVPNPKRMSKVLFTT--RFVE--VYG-HKEADEMFRMECLRHEEAWKLFQMKVGK 169 (577)
Q Consensus 99 --kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gsrIivTT--R~~~--v~~-~~~~~~~~~l~~L~~~~~~~Lf~~~a~~ 169 (577)
++.++|+|||+. ..+++.+...+ ..|+.++|++ .+.. +.. ...-...+.+++|+.++...++.+.+-.
T Consensus 107 ~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~ 183 (725)
T PRK13341 107 HGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQD 183 (725)
T ss_pred cCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHHHH
Confidence 567999999964 34566554333 3366666643 3321 211 1112357899999999999998876641
Q ss_pred CC----CCCCCChhHHHHHHHHHcCCC
Q 037229 170 ET----MDDHSDIPKLVEIVTKECGGL 192 (577)
Q Consensus 170 ~~----~~~~~~~~~~~~~i~~~c~gl 192 (577)
.. .....--++....|++.+.|-
T Consensus 184 ~~~~~g~~~v~I~deaL~~La~~s~GD 210 (725)
T PRK13341 184 KERGYGDRKVDLEPEAEKHLVDVANGD 210 (725)
T ss_pred HHhhcCCcccCCCHHHHHHHHHhCCCC
Confidence 10 001112245667788888875
No 103
>PRK09087 hypothetical protein; Validated
Probab=93.37 E-value=0.9 Score=42.77 Aligned_cols=133 Identities=11% Similarity=-0.002 Sum_probs=77.9
Q ss_pred ceEEEEEeccc----hhHHHHHHHhCCCcchhccCCHHHHHHHHHHhccccEEEEEecCCCh----hhhcccCCCCCCCC
Q 037229 54 VGIIGLYGMEG----WIQEQIRRKLGLVDDLWARKGLEEKAMNIFGILSKEFVLCWMMCGSE----LILTQMGVPVPNPK 125 (577)
Q Consensus 54 ~~vv~I~G~gG----w~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~kr~LlVLDdv~~~----~~~~~l~~~~~~~~ 125 (577)
-..+.|||..| -+.+.+....+. ...+.......+...+ +.-+|++||+... ..+-.+..... .
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~-----~~i~~~~~~~~~~~~~-~~~~l~iDDi~~~~~~~~~lf~l~n~~~--~ 115 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDA-----LLIHPNEIGSDAANAA-AEGPVLIEDIDAGGFDETGLFHLINSVR--Q 115 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCC-----EEecHHHcchHHHHhh-hcCeEEEECCCCCCCCHHHHHHHHHHHH--h
Confidence 35689999998 255554444322 1222222222222222 2347888999532 22222222222 3
Q ss_pred CCcEEEEEeCc---------hhhhhcCCCCceEecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCchHH
Q 037229 126 RMSKVLFTTRF---------VEVYGHKEADEMFRMECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLPLVL 196 (577)
Q Consensus 126 ~gsrIivTTR~---------~~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai 196 (577)
.|..||+|++. .++...+....++++++++.++-.+++.+.+-...... -+++..-|++.+.|-.-++
T Consensus 116 ~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l---~~ev~~~La~~~~r~~~~l 192 (226)
T PRK09087 116 AGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYV---DPHVVYYLVSRMERSLFAA 192 (226)
T ss_pred CCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHhhhhHHHH
Confidence 36679998873 33445555667999999999999999998885433112 2466677777777765555
Q ss_pred H
Q 037229 197 V 197 (577)
Q Consensus 197 ~ 197 (577)
.
T Consensus 193 ~ 193 (226)
T PRK09087 193 Q 193 (226)
T ss_pred H
Confidence 4
No 104
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=93.35 E-value=0.73 Score=50.46 Aligned_cols=165 Identities=14% Similarity=0.089 Sum_probs=98.1
Q ss_pred CCccccHHHHHHHHHHhhcCCCceEEEEEeccch----hHHHHHHHhCCCc----------------------c--hh--
Q 037229 32 DLTVGLESTFDQVWSCLVEEEQVGIIGLYGMEGW----IQEQIRRKLGLVD----------------------D--LW-- 81 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~~~~~vv~I~G~gGw----~~~~i~~~l~~~~----------------------~--~~-- 81 (577)
+++||.+..++.|.+++..+.-...+-++|..|. +.+.+++.+.... + ..
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDA 95 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDA 95 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEecc
Confidence 5789999999999999987533445568899993 3333333332110 0 00
Q ss_pred -ccCCHHHHHHHHHHhc----c-ccEEEEEecCCCh--hhhcccCCCCCCCCCCcEEEEEeCchh-hhhcC-CCCceEec
Q 037229 82 -ARKGLEEKAMNIFGIL----S-KEFVLCWMMCGSE--LILTQMGVPVPNPKRMSKVLFTTRFVE-VYGHK-EADEMFRM 151 (577)
Q Consensus 82 -~~~~~~~~~~~l~~~L----~-kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~~~-v~~~~-~~~~~~~l 151 (577)
+....+++.+.+.... . +.-++|||++... ..|+.+...+-......++|+||++.+ +...+ .-...+.+
T Consensus 96 as~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~F 175 (830)
T PRK07003 96 ASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNL 175 (830)
T ss_pred cccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEec
Confidence 1122333333332211 1 3447889999765 346666555544344677777777644 32221 12357999
Q ss_pred CCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCc-hHHHHH
Q 037229 152 ECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLP-LVLVTT 199 (577)
Q Consensus 152 ~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~ 199 (577)
..++.++..+.+.+.+...... --.+..+.|++.++|-. -|+..+
T Consensus 176 k~Ls~eeIv~~L~~Il~~EgI~---id~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 176 KQMPAGHIVSHLERILGEERIA---FEPQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred CCcCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 9999999999888876443311 12456678889998854 455443
No 105
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=93.34 E-value=1.7 Score=44.64 Aligned_cols=156 Identities=12% Similarity=0.035 Sum_probs=93.1
Q ss_pred CCccccHHHHHHHHHHhhcCC---------CceEEEEEeccch----hHHHHHHHhCCCc--------------------
Q 037229 32 DLTVGLESTFDQVWSCLVEEE---------QVGIIGLYGMEGW----IQEQIRRKLGLVD-------------------- 78 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~~---------~~~vv~I~G~gGw----~~~~i~~~l~~~~-------------------- 78 (577)
++++|-+..++.+.+.+.... -..-+-++|+.|. +.+.++..+....
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 578999999999999998742 3466779999994 4444444442211
Q ss_pred ch---h----ccCCHHHHHHHHHHhcc------ccEEEEEecCCCh--hhhcccCCCCCCCCCCcEEEEEeCch-hhhhc
Q 037229 79 DL---W----ARKGLEEKAMNIFGILS------KEFVLCWMMCGSE--LILTQMGVPVPNPKRMSKVLFTTRFV-EVYGH 142 (577)
Q Consensus 79 ~~---~----~~~~~~~~~~~l~~~L~------kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~~-~v~~~ 142 (577)
+. . .....++ ++.+.+.+. ++-++++|++... ...+.+...+-....+..+|++|.+. .+...
T Consensus 85 pD~~~i~~~~~~i~i~~-iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpT 163 (394)
T PRK07940 85 PDVRVVAPEGLSIGVDE-VRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPT 163 (394)
T ss_pred CCEEEeccccccCCHHH-HHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHH
Confidence 00 0 1122233 233444333 3347888999764 33344444443334456666666654 34322
Q ss_pred CC-CCceEecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCchHH
Q 037229 143 KE-ADEMFRMECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLPLVL 196 (577)
Q Consensus 143 ~~-~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai 196 (577)
.. -...+.+.+++.++..+.+...... -.+.+..++..++|.|...
T Consensus 164 IrSRc~~i~f~~~~~~~i~~~L~~~~~~--------~~~~a~~la~~s~G~~~~A 210 (394)
T PRK07940 164 IRSRCRHVALRTPSVEAVAEVLVRRDGV--------DPETARRAARASQGHIGRA 210 (394)
T ss_pred HHhhCeEEECCCCCHHHHHHHHHHhcCC--------CHHHHHHHHHHcCCCHHHH
Confidence 22 2468899999999998888743211 1345677889999988644
No 106
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=93.27 E-value=1.1 Score=49.15 Aligned_cols=170 Identities=14% Similarity=0.075 Sum_probs=103.6
Q ss_pred cCCCCCCCccccHHHHHHHHHHhhcCCCceEEEEEeccc---------------------h------------hHHHHHH
Q 037229 26 VDGRPSDLTVGLESTFDQVWSCLVEEEQVGIIGLYGMEG---------------------W------------IQEQIRR 72 (577)
Q Consensus 26 ~~~~~~~~~vGr~~~~~~i~~~L~~~~~~~vv~I~G~gG---------------------w------------~~~~i~~ 72 (577)
+.|.+....|-|..- .+.|....+.+++-|.-++| | +...++.
T Consensus 13 ~~P~~~~~~v~R~rL----~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~~~~~~v~Wlslde~dndp~rF~~yLi~ 88 (894)
T COG2909 13 VRPVRPDNYVVRPRL----LDRLRRANDYRLILISAPAGFGKTTLLAQWRELAADGAAVAWLSLDESDNDPARFLSYLIA 88 (894)
T ss_pred CCCCCcccccccHHH----HHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhcCcccceeEeecCCccCCHHHHHHHHHH
Confidence 333333566666554 44555556778999998888 3 5555555
Q ss_pred HhCCCcc-----------hhccCCHHHHHHHHHHhcc---ccEEEEEecCCC---hhhhcccCCCCCCCCCCcEEEEEeC
Q 037229 73 KLGLVDD-----------LWARKGLEEKAMNIFGILS---KEFVLCWMMCGS---ELILTQMGVPVPNPKRMSKVLFTTR 135 (577)
Q Consensus 73 ~l~~~~~-----------~~~~~~~~~~~~~l~~~L~---kr~LlVLDdv~~---~~~~~~l~~~~~~~~~gsrIivTTR 135 (577)
.++...+ .....+...+...+...|. +...+||||--- ..--+.+..-+.....+-..|||||
T Consensus 89 al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR 168 (894)
T COG2909 89 ALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSR 168 (894)
T ss_pred HHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEec
Confidence 5542110 1134556667777777777 788999999632 2112222222233345678999999
Q ss_pred chhhhhcCC---CCceEecC----CCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCchHHHHHHHHHhc
Q 037229 136 FVEVYGHKE---ADEMFRME----CLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLPLVLVTTARAMAY 205 (577)
Q Consensus 136 ~~~v~~~~~---~~~~~~l~----~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~~ 205 (577)
+.--..... .+...++. .++.+|+-++|....... --..-.+.+.+.-.|-+-|+..++-.++.
T Consensus 169 ~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~------Ld~~~~~~L~~~teGW~~al~L~aLa~~~ 239 (894)
T COG2909 169 SRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLP------LDAADLKALYDRTEGWAAALQLIALALRN 239 (894)
T ss_pred cCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCC------CChHHHHHHHhhcccHHHHHHHHHHHccC
Confidence 875432211 12333433 478999999998765221 11345677888889999998888877774
No 107
>PLN03025 replication factor C subunit; Provisional
Probab=93.22 E-value=0.83 Score=45.63 Aligned_cols=158 Identities=12% Similarity=0.041 Sum_probs=90.5
Q ss_pred CCccccHHHHHHHHHHhhcCCCceEEEEEeccch----hHHHHHHHhCCCc--------chhccCCHHHHHHHHHHhc--
Q 037229 32 DLTVGLESTFDQVWSCLVEEEQVGIIGLYGMEGW----IQEQIRRKLGLVD--------DLWARKGLEEKAMNIFGIL-- 97 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~~~~~vv~I~G~gGw----~~~~i~~~l~~~~--------~~~~~~~~~~~~~~l~~~L-- 97 (577)
++++|.++.++.|.+++.. ++..-+-++|..|- +.+.++..+.... ...+....+.....+....
T Consensus 13 ~~~~g~~~~~~~L~~~~~~-~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~~vr~~i~~~~~~ 91 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARD-GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQK 91 (319)
T ss_pred HHhcCcHHHHHHHHHHHhc-CCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHHHHHHHHHHHHhc
Confidence 5789999999998888776 44444668999992 3444444432111 0011222333333333321
Q ss_pred -----c-ccEEEEEecCCCh--hhhcccCCCCCCCCCCcEEEEEeCch-hhhhcCC-CCceEecCCCCHHHHHHHHHHhh
Q 037229 98 -----S-KEFVLCWMMCGSE--LILTQMGVPVPNPKRMSKVLFTTRFV-EVYGHKE-ADEMFRMECLRHEEAWKLFQMKV 167 (577)
Q Consensus 98 -----~-kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~~-~v~~~~~-~~~~~~l~~L~~~~~~~Lf~~~a 167 (577)
. +.-++++|++... ...+.+...+......++++++|... .+..... -...+++.++++++....+...+
T Consensus 92 ~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~ 171 (319)
T PLN03025 92 KVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVV 171 (319)
T ss_pred cccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHHHH
Confidence 1 3458999999764 22333333332223456777766432 2211111 13578999999999998888877
Q ss_pred CCCCCCCCCChhHHHHHHHHHcCCCc
Q 037229 168 GKETMDDHSDIPKLVEIVTKECGGLP 193 (577)
Q Consensus 168 ~~~~~~~~~~~~~~~~~i~~~c~glP 193 (577)
-....... .+....+++.++|-.
T Consensus 172 ~~egi~i~---~~~l~~i~~~~~gDl 194 (319)
T PLN03025 172 EAEKVPYV---PEGLEAIIFTADGDM 194 (319)
T ss_pred HHcCCCCC---HHHHHHHHHHcCCCH
Confidence 44331111 456778889998865
No 108
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.07 E-value=0.058 Score=27.66 Aligned_cols=17 Identities=35% Similarity=0.575 Sum_probs=8.6
Q ss_pred CCcceEeeecCCCCCcCC
Q 037229 546 KNLKGITVSSCPNLKRLP 563 (577)
Q Consensus 546 ~~L~~L~i~~c~~L~~lp 563 (577)
++|+.|++++|. |+++|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 456777777775 66665
No 109
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=92.78 E-value=1.4 Score=45.40 Aligned_cols=157 Identities=14% Similarity=0.151 Sum_probs=89.6
Q ss_pred CCccccHHHHHHHHHHhhcC------------CCceEEEEEeccc----hhHHHHHHHhCCCcchhc--------cCCHH
Q 037229 32 DLTVGLESTFDQVWSCLVEE------------EQVGIIGLYGMEG----WIQEQIRRKLGLVDDLWA--------RKGLE 87 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~------------~~~~vv~I~G~gG----w~~~~i~~~l~~~~~~~~--------~~~~~ 87 (577)
+++.|+++.++++.+.+... ...+-|-++|..| .+.+.++.+++..--... .....
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g~~~ 210 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGEGA 210 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhccchH
Confidence 56789999999999876431 2345688999999 366777776654321000 01112
Q ss_pred HHHHHHHHhcc--ccEEEEEecCCChh------------h----hcccCCCCC--CCCCCcEEEEEeCchhhhhc--C--
Q 037229 88 EKAMNIFGILS--KEFVLCWMMCGSEL------------I----LTQMGVPVP--NPKRMSKVLFTTRFVEVYGH--K-- 143 (577)
Q Consensus 88 ~~~~~l~~~L~--kr~LlVLDdv~~~~------------~----~~~l~~~~~--~~~~gsrIivTTR~~~v~~~--~-- 143 (577)
...+.+.+..+ ...+|++||+.... + +..+...+. ....+.+||.||...+.... .
T Consensus 211 ~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRp 290 (389)
T PRK03992 211 RLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRP 290 (389)
T ss_pred HHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCC
Confidence 23333444333 56899999997520 0 111111111 11235677777765443211 1
Q ss_pred -CCCceEecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCC
Q 037229 144 -EADEMFRMECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGL 192 (577)
Q Consensus 144 -~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~gl 192 (577)
.-+..+++...+.++-.++|..++.........++ ..+++.+.|+
T Consensus 291 gRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~----~~la~~t~g~ 336 (389)
T PRK03992 291 GRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDL----EELAELTEGA 336 (389)
T ss_pred ccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCH----HHHHHHcCCC
Confidence 22457899999999999999988754432222233 3455556665
No 110
>PRK05642 DNA replication initiation factor; Validated
Probab=92.75 E-value=1.2 Score=42.11 Aligned_cols=139 Identities=11% Similarity=0.083 Sum_probs=77.3
Q ss_pred eEEEEEeccc----hhHHHHHHHhCCCcchhccCCHHHHHH---HHHHhccccEEEEEecCCCh---hhhcc-cCCCCCC
Q 037229 55 GIIGLYGMEG----WIQEQIRRKLGLVDDLWARKGLEEKAM---NIFGILSKEFVLCWMMCGSE---LILTQ-MGVPVPN 123 (577)
Q Consensus 55 ~vv~I~G~gG----w~~~~i~~~l~~~~~~~~~~~~~~~~~---~l~~~L~kr~LlVLDdv~~~---~~~~~-l~~~~~~ 123 (577)
..+.|+|..| .+.+.+..++.......-..+.+++.. .+.+.+..-=+||+||+... .+|.. +...+..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~ 125 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRGPELLDNLEQYELVCLDDLDVIAGKADWEEALFHLFNR 125 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhhHHHHHhhhhCCEEEEechhhhcCChHHHHHHHHHHHH
Confidence 5678999998 355555554422111112223333332 23333331126889999632 34433 3333321
Q ss_pred -CCCCcEEEEEeCchhh---------hhcCCCCceEecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCc
Q 037229 124 -PKRMSKVLFTTRFVEV---------YGHKEADEMFRMECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLP 193 (577)
Q Consensus 124 -~~~gsrIivTTR~~~v---------~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP 193 (577)
...|.+||+|++...- ...+....+++++++++++-.++...++....... -+++..-+++.+.|-.
T Consensus 126 ~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l---~~ev~~~L~~~~~~d~ 202 (234)
T PRK05642 126 LRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGLHL---TDEVGHFILTRGTRSM 202 (234)
T ss_pred HHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHhcCCCH
Confidence 1346779998875332 12223346789999999999999987664432111 1467777888887765
Q ss_pred hHH
Q 037229 194 LVL 196 (577)
Q Consensus 194 Lai 196 (577)
-++
T Consensus 203 r~l 205 (234)
T PRK05642 203 SAL 205 (234)
T ss_pred HHH
Confidence 444
No 111
>COG3899 Predicted ATPase [General function prediction only]
Probab=92.62 E-value=1.2 Score=50.60 Aligned_cols=113 Identities=14% Similarity=0.088 Sum_probs=67.1
Q ss_pred HHHHHHHhcc--ccEEEEEecCCC-hhh----hcccCCCCCC-CCCCcEEEE--EeCch--hhhhcCCCCceEecCCCCH
Q 037229 89 KAMNIFGILS--KEFVLCWMMCGS-ELI----LTQMGVPVPN-PKRMSKVLF--TTRFV--EVYGHKEADEMFRMECLRH 156 (577)
Q Consensus 89 ~~~~l~~~L~--kr~LlVLDdv~~-~~~----~~~l~~~~~~-~~~gsrIiv--TTR~~--~v~~~~~~~~~~~l~~L~~ 156 (577)
....|..... |+..+|+||+-. +.. +..+.....- ......|.. |.+.. .+-........+.+.+|+.
T Consensus 142 ~~~~i~~~~~~~~plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~ 221 (849)
T COG3899 142 FLRFIQVFTAEEHPLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSR 221 (849)
T ss_pred HHHHHHHHHhccCCeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCch
Confidence 3445555555 699999999943 211 2222111110 000112222 22222 1222223346899999999
Q ss_pred HHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCchHHHHHHHHHhc
Q 037229 157 EEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLPLVLVTTARAMAY 205 (577)
Q Consensus 157 ~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~~ 205 (577)
.+.-.+......... ....+..+.|+++-+|.|+.+.-+-..+..
T Consensus 222 ~d~~~lV~~~l~~~~----~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~ 266 (849)
T COG3899 222 ADTNQLVAATLGCTK----LLPAPLLELIFEKTKGNPFFIEEFLKALYE 266 (849)
T ss_pred hhHHHHHHHHhCCcc----cccchHHHHHHHHhcCCCccHHHHHHHHHh
Confidence 999999887765422 333567889999999999999888777765
No 112
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=92.54 E-value=1.2 Score=44.73 Aligned_cols=158 Identities=15% Similarity=0.095 Sum_probs=89.2
Q ss_pred CCccccHHHH--HHHHHHhhcCCCceEEEEEeccch----hHHHHHHHhCCCcchh--ccCCHHHHHHHHH---Hhcc--
Q 037229 32 DLTVGLESTF--DQVWSCLVEEEQVGIIGLYGMEGW----IQEQIRRKLGLVDDLW--ARKGLEEKAMNIF---GILS-- 98 (577)
Q Consensus 32 ~~~vGr~~~~--~~i~~~L~~~~~~~vv~I~G~gGw----~~~~i~~~l~~~~~~~--~~~~~~~~~~~l~---~~L~-- 98 (577)
+++||.+.-+ ..++..+...+.+..+-.||++|- +.+-|+...+...... ......++.+.+. +...
T Consensus 24 de~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvkdlr~i~e~a~~~~~~g 103 (436)
T COG2256 24 DEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDLREIIEEARKNRLLG 103 (436)
T ss_pred HHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccccHHHHHHHHHHHHHHHhcC
Confidence 3466655444 222222333377777889999993 5556666555433211 2233344433333 3333
Q ss_pred ccEEEEEecCCCh--hhhcccCCCCCCCCCCcEEEEE--eCchhhh---hcCCCCceEecCCCCHHHHHHHHHHhhCCCC
Q 037229 99 KEFVLCWMMCGSE--LILTQMGVPVPNPKRMSKVLFT--TRFVEVY---GHKEADEMFRMECLRHEEAWKLFQMKVGKET 171 (577)
Q Consensus 99 kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivT--TR~~~v~---~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~ 171 (577)
+|.+|.+|.|-.- .|-+.+. |.-.+|.-|+|- |-+.... ....-..++++++|+.++-.+++.+.+....
T Consensus 104 r~tiLflDEIHRfnK~QQD~lL---p~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~ 180 (436)
T COG2256 104 RRTILFLDEIHRFNKAQQDALL---PHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEE 180 (436)
T ss_pred CceEEEEehhhhcChhhhhhhh---hhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhh
Confidence 7999999999543 4444443 334567777774 4444321 1112356999999999999999998443222
Q ss_pred CC---CCCChh-HHHHHHHHHcCCC
Q 037229 172 MD---DHSDIP-KLVEIVTKECGGL 192 (577)
Q Consensus 172 ~~---~~~~~~-~~~~~i~~~c~gl 192 (577)
.. ....+. +.-..++..+.|-
T Consensus 181 rgl~~~~~~i~~~a~~~l~~~s~GD 205 (436)
T COG2256 181 RGLGGQIIVLDEEALDYLVRLSNGD 205 (436)
T ss_pred cCCCcccccCCHHHHHHHHHhcCch
Confidence 11 112233 3556677778775
No 113
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.53 E-value=0.0046 Score=56.33 Aligned_cols=92 Identities=23% Similarity=0.161 Sum_probs=81.1
Q ss_pred CCcchhhcCCCCcccEEEccCCCCCcccchhhhcCcCCCEEeccCCCCCcccccccCCCcCcEecccccccccccchHHh
Q 037229 311 SMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSSSGILELPKELGFLGNLACLNLENTSSHGTITRQLR 390 (577)
Q Consensus 311 ~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i 390 (577)
..+|-.-+..+...++||++.+ .+..+-..++.++.|..|+++.+.+..+|..++.+..+..+++..| ++...|.+ .
T Consensus 31 s~~~v~ei~~~kr~tvld~~s~-r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s-~ 107 (326)
T KOG0473|consen 31 SEIPVREIASFKRVTVLDLSSN-RLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKS-Q 107 (326)
T ss_pred cccchhhhhccceeeeehhhhh-HHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCcc-c
Confidence 3455333667889999999999 8888888899999999999999999999999999999999999988 88999998 9
Q ss_pred cCCCCCcEEEeeeec
Q 037229 391 SNFSKPQVLRMFRFY 405 (577)
Q Consensus 391 ~~l~~L~~L~l~~~~ 405 (577)
++++.++.++.-++.
T Consensus 108 ~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 108 KKEPHPKKNEQKKTE 122 (326)
T ss_pred cccCCcchhhhccCc
Confidence 999999999887775
No 114
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=92.30 E-value=0.71 Score=39.46 Aligned_cols=103 Identities=17% Similarity=-0.035 Sum_probs=58.4
Q ss_pred cccHHHHHHHHHHhhcCCCceEEEEEeccc----hhHHHHHHHhCCCcch---h---ccCCHHHHHH---------HHHH
Q 037229 35 VGLESTFDQVWSCLVEEEQVGIIGLYGMEG----WIQEQIRRKLGLVDDL---W---ARKGLEEKAM---------NIFG 95 (577)
Q Consensus 35 vGr~~~~~~i~~~L~~~~~~~vv~I~G~gG----w~~~~i~~~l~~~~~~---~---~~~~~~~~~~---------~l~~ 95 (577)
+|++..++.+...+.. .....+.|+|..| .+.+.++..+...... . +......... ....
T Consensus 1 ~~~~~~~~~i~~~~~~-~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (151)
T cd00009 1 VGQEEAIEALREALEL-PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFEL 79 (151)
T ss_pred CchHHHHHHHHHHHhC-CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHh
Confidence 4788899999888876 4556788999999 3777777766211100 0 0011111111 1112
Q ss_pred hcc-ccEEEEEecCCCh-----hhhcccCCCCCCC---CCCcEEEEEeCchh
Q 037229 96 ILS-KEFVLCWMMCGSE-----LILTQMGVPVPNP---KRMSKVLFTTRFVE 138 (577)
Q Consensus 96 ~L~-kr~LlVLDdv~~~-----~~~~~l~~~~~~~---~~gsrIivTTR~~~ 138 (577)
... +..++|+||++.. ..+..+...+... ..+.+||+||....
T Consensus 80 ~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 80 AEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 223 7789999999853 2233322222221 35778888887653
No 115
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.68 E-value=1.7 Score=44.79 Aligned_cols=161 Identities=9% Similarity=0.020 Sum_probs=95.8
Q ss_pred CCccccHHHHHHHHHHhhcCCCceEEEEEeccch----hHHHHHHHhCCCc------------ch---------------
Q 037229 32 DLTVGLESTFDQVWSCLVEEEQVGIIGLYGMEGW----IQEQIRRKLGLVD------------DL--------------- 80 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~~~~~vv~I~G~gGw----~~~~i~~~l~~~~------------~~--------------- 80 (577)
++++|-+..++.+.+++..+.-...+-++|+.|. +.+.+++.+.... ..
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~ 95 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGTS 95 (397)
T ss_pred hhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCCC
Confidence 6799999999999998887433455778999994 3444444443210 00
Q ss_pred -----h---ccCCHHHHHHHHHHhcc------ccEEEEEecCCCh--hhhcccCCCCCCCCCCcEEEEEe-CchhhhhcC
Q 037229 81 -----W---ARKGLEEKAMNIFGILS------KEFVLCWMMCGSE--LILTQMGVPVPNPKRMSKVLFTT-RFVEVYGHK 143 (577)
Q Consensus 81 -----~---~~~~~~~~~~~l~~~L~------kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTT-R~~~v~~~~ 143 (577)
. .....+++. .+.+.+. .+-++|+|++... ..++.+...+......+.+|++| +...+....
T Consensus 96 ~n~~~~~~~~~~~id~Ir-~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl 174 (397)
T PRK14955 96 LNISEFDAASNNSVDDIR-LLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATI 174 (397)
T ss_pred CCeEeecccccCCHHHHH-HHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHH
Confidence 0 111133333 3444442 4558899998754 45666655555444566666555 444443222
Q ss_pred C-CCceEecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCchHH
Q 037229 144 E-ADEMFRMECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLPLVL 196 (577)
Q Consensus 144 ~-~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai 196 (577)
. ....+++.+++.++..+.+...+-... ..--.+.+..+++.++|.+--+
T Consensus 175 ~sR~~~v~f~~l~~~ei~~~l~~~~~~~g---~~i~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 175 ASRCQRFNFKRIPLEEIQQQLQGICEAEG---ISVDADALQLIGRKAQGSMRDA 225 (397)
T ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCCCHHHH
Confidence 1 134788999999988877776653222 1112466778899999966433
No 116
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.54 E-value=2.5 Score=45.77 Aligned_cols=161 Identities=14% Similarity=0.052 Sum_probs=97.2
Q ss_pred CCccccHHHHHHHHHHhhcCCCceEEEEEeccch----hHHHHHHHhCCCcc---------------------h---h--
Q 037229 32 DLTVGLESTFDQVWSCLVEEEQVGIIGLYGMEGW----IQEQIRRKLGLVDD---------------------L---W-- 81 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~~~~~vv~I~G~gGw----~~~~i~~~l~~~~~---------------------~---~-- 81 (577)
+++||.+..++.|.+++..+.-...+-++|..|. +.+.+++.+..... . .
T Consensus 15 ddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDA 94 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDA 94 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEecc
Confidence 5799999999999999988544567788999994 44444554432100 0 0
Q ss_pred -ccCCHHHHHHHHHHhc-----c-ccEEEEEecCCCh--hhhcccCCCCCCCCCCcEEEEEeCchh-hh-hcCCCCceEe
Q 037229 82 -ARKGLEEKAMNIFGIL-----S-KEFVLCWMMCGSE--LILTQMGVPVPNPKRMSKVLFTTRFVE-VY-GHKEADEMFR 150 (577)
Q Consensus 82 -~~~~~~~~~~~l~~~L-----~-kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~~~-v~-~~~~~~~~~~ 150 (577)
+....+++. .+.+.+ . ++-++|+|+|... ...+.+...+.....+.++|++|.+.. +. ....-...++
T Consensus 95 As~~~VddIR-eli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq~fe 173 (702)
T PRK14960 95 ASRTKVEDTR-ELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFT 173 (702)
T ss_pred cccCCHHHHH-HHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhheee
Confidence 112233332 233322 1 4458999999754 345555444443344567777776533 32 1112346899
Q ss_pred cCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCchHH
Q 037229 151 MECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLPLVL 196 (577)
Q Consensus 151 l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai 196 (577)
+.+++.++..+.+.+.+..... .--.+....|++.++|-+-.+
T Consensus 174 FkpLs~eEI~k~L~~Il~kEgI---~id~eAL~~IA~~S~GdLRdA 216 (702)
T PRK14960 174 LRPLAVDEITKHLGAILEKEQI---AADQDAIWQIAESAQGSLRDA 216 (702)
T ss_pred ccCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 9999999998888877644331 122355677888898866433
No 117
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.42 E-value=6 Score=40.37 Aligned_cols=166 Identities=11% Similarity=0.075 Sum_probs=96.3
Q ss_pred CCccccHHHHHHHHHHhhcCCCceEEEEEeccch----hHHHHHHHhCCCc-----c--h-----h---ccCCHHHHHHH
Q 037229 32 DLTVGLESTFDQVWSCLVEEEQVGIIGLYGMEGW----IQEQIRRKLGLVD-----D--L-----W---ARKGLEEKAMN 92 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~~~~~vv~I~G~gGw----~~~~i~~~l~~~~-----~--~-----~---~~~~~~~~~~~ 92 (577)
++++|.+..++.+.+.+..+.-...+-++|..|. +.+.++..+.... . . . ...+.+.+...
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~l 96 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDIRNL 96 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHHHHH
Confidence 6789999999999999987444457889999993 5555566553310 0 0 0 11112333322
Q ss_pred HHH--hc--c-ccEEEEEecCCCh--hhhcccCCCCCCCCCCcEEEEEe-Cchhhhhc-CCCCceEecCCCCHHHHHHHH
Q 037229 93 IFG--IL--S-KEFVLCWMMCGSE--LILTQMGVPVPNPKRMSKVLFTT-RFVEVYGH-KEADEMFRMECLRHEEAWKLF 163 (577)
Q Consensus 93 l~~--~L--~-kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTT-R~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf 163 (577)
+.+ .. . ++-++++|++... ..++.+...+........+|++| ....+... ......+++.+++.++....+
T Consensus 97 ~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l 176 (367)
T PRK14970 97 IDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHL 176 (367)
T ss_pred HHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCCccHHHHHHHH
Confidence 222 11 1 4558999998643 33555543333323345555555 33333222 122357899999999988888
Q ss_pred HHhhCCCCCCCCCChhHHHHHHHHHcCCCch-HHHHHH
Q 037229 164 QMKVGKETMDDHSDIPKLVEIVTKECGGLPL-VLVTTA 200 (577)
Q Consensus 164 ~~~a~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~g 200 (577)
...+....... -.+....+++.++|-+- ++..+-
T Consensus 177 ~~~~~~~g~~i---~~~al~~l~~~~~gdlr~~~~~le 211 (367)
T PRK14970 177 AGIAVKEGIKF---EDDALHIIAQKADGALRDALSIFD 211 (367)
T ss_pred HHHHHHcCCCC---CHHHHHHHHHhCCCCHHHHHHHHH
Confidence 87765433111 13667778888888544 434333
No 118
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=91.05 E-value=3.8 Score=43.46 Aligned_cols=161 Identities=14% Similarity=0.102 Sum_probs=97.4
Q ss_pred CCccccHHHHHHHHHHhhcCCCceEEEEEeccch----hHHHHHHHhCCCcc-------------------------h--
Q 037229 32 DLTVGLESTFDQVWSCLVEEEQVGIIGLYGMEGW----IQEQIRRKLGLVDD-------------------------L-- 80 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~~~~~vv~I~G~gGw----~~~~i~~~l~~~~~-------------------------~-- 80 (577)
+++||-+..+..+...+..+.-..-+-++|..|- +.+.+++.+..... .
T Consensus 21 ~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~ 100 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDII 100 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcEE
Confidence 5789999999998887777433356778899882 44444444422100 0
Q ss_pred -h---ccCCHHHHHHHHHHh----cc-ccEEEEEecCCCh--hhhcccCCCCCCCCCCcEEEE-EeCchhhhhcCC-CCc
Q 037229 81 -W---ARKGLEEKAMNIFGI----LS-KEFVLCWMMCGSE--LILTQMGVPVPNPKRMSKVLF-TTRFVEVYGHKE-ADE 147 (577)
Q Consensus 81 -~---~~~~~~~~~~~l~~~----L~-kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiv-TTR~~~v~~~~~-~~~ 147 (577)
. .....+++.+.+... +. ++-++|+|+++.. ..|+.+...+......+.+|+ ||+...+..... ...
T Consensus 101 eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SRc~ 180 (507)
T PRK06645 101 EIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQ 180 (507)
T ss_pred EeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhcce
Confidence 0 112233333322221 12 5668999999874 457777666554444566554 555555543332 235
Q ss_pred eEecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCchH
Q 037229 148 MFRMECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLPLV 195 (577)
Q Consensus 148 ~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLa 195 (577)
.+++.+++.++....+...+...... --.+....|++.++|.+--
T Consensus 181 ~~ef~~ls~~el~~~L~~i~~~egi~---ie~eAL~~Ia~~s~GslR~ 225 (507)
T PRK06645 181 RYDLRRLSFEEIFKLLEYITKQENLK---TDIEALRIIAYKSEGSARD 225 (507)
T ss_pred EEEccCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHH
Confidence 78999999999999998887543311 1234566788899987633
No 119
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=90.97 E-value=8.2 Score=35.00 Aligned_cols=87 Identities=10% Similarity=0.043 Sum_probs=56.9
Q ss_pred ccEEEEEecCCCh--hhhcccCCCCCCCCCCcEEEEEeCch-hhhhcC-CCCceEecCCCCHHHHHHHHHHhhCCCCCCC
Q 037229 99 KEFVLCWMMCGSE--LILTQMGVPVPNPKRMSKVLFTTRFV-EVYGHK-EADEMFRMECLRHEEAWKLFQMKVGKETMDD 174 (577)
Q Consensus 99 kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~~-~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~ 174 (577)
.+-++|+||+... ..++.+...+......+.+|++|++. .+.... .....+++.+++.++..+.+... + .
T Consensus 96 ~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g-i--- 169 (188)
T TIGR00678 96 GRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G-I--- 169 (188)
T ss_pred CeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C-C---
Confidence 4558999998654 34555655554444456677766643 332221 12358999999999988888776 1 1
Q ss_pred CCChhHHHHHHHHHcCCCch
Q 037229 175 HSDIPKLVEIVTKECGGLPL 194 (577)
Q Consensus 175 ~~~~~~~~~~i~~~c~glPL 194 (577)
-.+.+..+++.++|.|.
T Consensus 170 ---~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 170 ---SEEAAELLLALAGGSPG 186 (188)
T ss_pred ---CHHHHHHHHHHcCCCcc
Confidence 13567889999999875
No 120
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.97 E-value=3 Score=46.80 Aligned_cols=161 Identities=11% Similarity=0.071 Sum_probs=95.6
Q ss_pred CCccccHHHHHHHHHHhhcCCCceEEEEEeccch----hHHHHHHHhCCCcc------------------------hhc-
Q 037229 32 DLTVGLESTFDQVWSCLVEEEQVGIIGLYGMEGW----IQEQIRRKLGLVDD------------------------LWA- 82 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~~~~~vv~I~G~gGw----~~~~i~~~l~~~~~------------------------~~~- 82 (577)
+++||-+..++.|.+++..+.-...+-++|..|- +.+.+++.+..... ..+
T Consensus 16 ddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidA 95 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDA 95 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEecc
Confidence 6799999999999999887433345578899982 44555555533200 000
Q ss_pred --cCCHHHHHHHHHHhcc------ccEEEEEecCCCh--hhhcccCCCCCCCCCCcEEEEEeCc-hhhhhcC-CCCceEe
Q 037229 83 --RKGLEEKAMNIFGILS------KEFVLCWMMCGSE--LILTQMGVPVPNPKRMSKVLFTTRF-VEVYGHK-EADEMFR 150 (577)
Q Consensus 83 --~~~~~~~~~~l~~~L~------kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~-~~v~~~~-~~~~~~~ 150 (577)
....+.+ +.+.+.+. ++-++|+|++... ...+.|...+-......++|++|.+ ..+...+ .-...|+
T Consensus 96 as~~kVDdI-ReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRCq~f~ 174 (944)
T PRK14949 96 ASRTKVDDT-RELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFN 174 (944)
T ss_pred ccccCHHHH-HHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhheEEe
Confidence 1122222 33333332 4569999999654 4456655444333345566555544 4443221 1236899
Q ss_pred cCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCchHH
Q 037229 151 MECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLPLVL 196 (577)
Q Consensus 151 l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai 196 (577)
+.+|+.++..+.+.+.+-... -.--.+....|++.++|.|-.+
T Consensus 175 fkpLs~eEI~~~L~~il~~Eg---I~~edeAL~lIA~~S~Gd~R~A 217 (944)
T PRK14949 175 LKSLTQDEIGTQLNHILTQEQ---LPFEAEALTLLAKAANGSMRDA 217 (944)
T ss_pred CCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCCCHHHH
Confidence 999999999988887663322 1122356677889999977433
No 121
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=90.83 E-value=2.7 Score=44.13 Aligned_cols=164 Identities=9% Similarity=0.074 Sum_probs=93.7
Q ss_pred CCccccHHHHHHHHHHhhcCCCceEEEEEeccch----hHHHHHHHhCCCcc----------------------h---h-
Q 037229 32 DLTVGLESTFDQVWSCLVEEEQVGIIGLYGMEGW----IQEQIRRKLGLVDD----------------------L---W- 81 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~~~~~vv~I~G~gGw----~~~~i~~~l~~~~~----------------------~---~- 81 (577)
++++|.+..++.+.+++..+.-...+-++|..|. +.+.+++.+..... . .
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~~i~ 96 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDVLEID 96 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCceEEee
Confidence 6799999999999999987433466778999993 44444444422100 0 0
Q ss_pred --ccCCHHHHHHHHHHhcc------ccEEEEEecCCCh--hhhcccCCCCCCCCCCcEEEEEeC-chhhhhcC-CCCceE
Q 037229 82 --ARKGLEEKAMNIFGILS------KEFVLCWMMCGSE--LILTQMGVPVPNPKRMSKVLFTTR-FVEVYGHK-EADEMF 149 (577)
Q Consensus 82 --~~~~~~~~~~~l~~~L~------kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR-~~~v~~~~-~~~~~~ 149 (577)
.....+++. .+.+.+. .+-++|+|++... ...+.+...+........+|++|. ...+.... .....+
T Consensus 97 g~~~~gid~ir-~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sRc~~v 175 (451)
T PRK06305 97 GASHRGIEDIR-QINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQKM 175 (451)
T ss_pred ccccCCHHHHH-HHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHhceEE
Confidence 011122222 2333332 4568899998643 334444444433333556666653 33333221 224578
Q ss_pred ecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCc-hHHHHH
Q 037229 150 RMECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLP-LVLVTT 199 (577)
Q Consensus 150 ~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~ 199 (577)
++.+++.++....+...+-.... .--.+....+++.++|-+ .|+..+
T Consensus 176 ~f~~l~~~el~~~L~~~~~~eg~---~i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 176 HLKRIPEETIIDKLALIAKQEGI---ETSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred eCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999988877776533221 112356677888898854 444433
No 122
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.78 E-value=4.5 Score=43.30 Aligned_cols=166 Identities=13% Similarity=0.094 Sum_probs=95.6
Q ss_pred CCccccHHHHHHHHHHhhcCCCceEEEEEeccch----hHHHHHHHhCCCcc---------------------h---h--
Q 037229 32 DLTVGLESTFDQVWSCLVEEEQVGIIGLYGMEGW----IQEQIRRKLGLVDD---------------------L---W-- 81 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~~~~~vv~I~G~gGw----~~~~i~~~l~~~~~---------------------~---~-- 81 (577)
+++||-+..++.+...+..+.-...+-++|+.|. +.+.+++.+..... . .
T Consensus 16 ~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieida 95 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDA 95 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeec
Confidence 5789999999999998887433455778999993 55555555432100 0 0
Q ss_pred -ccCCHH---HHHHHHHHh-cc-ccEEEEEecCCCh--hhhcccCCCCCCCCCCcEEEE-EeCchhhhhc-CCCCceEec
Q 037229 82 -ARKGLE---EKAMNIFGI-LS-KEFVLCWMMCGSE--LILTQMGVPVPNPKRMSKVLF-TTRFVEVYGH-KEADEMFRM 151 (577)
Q Consensus 82 -~~~~~~---~~~~~l~~~-L~-kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiv-TTR~~~v~~~-~~~~~~~~l 151 (577)
.....+ .+.+.+... .. ++-++|+|++... ..++.+...+-.......+|. ||....+... ..-...+++
T Consensus 96 as~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc~~~~f 175 (546)
T PRK14957 96 ASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHL 175 (546)
T ss_pred ccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHheeeEEe
Confidence 111122 222222211 12 5569999999653 345666555544444565554 4444444322 222468999
Q ss_pred CCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCc-hHHHHHH
Q 037229 152 ECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLP-LVLVTTA 200 (577)
Q Consensus 152 ~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~g 200 (577)
.+++.++....+.+.+-.... .--+.....|++.++|-+ -|+..+-
T Consensus 176 ~~Ls~~eI~~~L~~il~~egi---~~e~~Al~~Ia~~s~GdlR~alnlLe 222 (546)
T PRK14957 176 KHISQADIKDQLKIILAKENI---NSDEQSLEYIAYHAKGSLRDALSLLD 222 (546)
T ss_pred CCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 999999988777765432221 112345567888888854 4554443
No 123
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.75 E-value=2.8 Score=44.20 Aligned_cols=168 Identities=14% Similarity=0.092 Sum_probs=96.7
Q ss_pred CCccccHHHHHHHHHHhhcCCCceEEEEEeccch----hHHHHHHHhCCCc----------------------c--hh--
Q 037229 32 DLTVGLESTFDQVWSCLVEEEQVGIIGLYGMEGW----IQEQIRRKLGLVD----------------------D--LW-- 81 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~~~~~vv~I~G~gGw----~~~~i~~~l~~~~----------------------~--~~-- 81 (577)
+++||.+...+.+...+..+.-...+-++|..|- +.+.++..+.... + ..
T Consensus 14 ~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~a 93 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDA 93 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeC
Confidence 5799999988888887777333356789999992 4444444443210 0 00
Q ss_pred -ccCCHHHHHHHHHHhcc------ccEEEEEecCCCh--hhhcccCCCCCCCCCCcEEEEEeCc-hhhhhcC-CCCceEe
Q 037229 82 -ARKGLEEKAMNIFGILS------KEFVLCWMMCGSE--LILTQMGVPVPNPKRMSKVLFTTRF-VEVYGHK-EADEMFR 150 (577)
Q Consensus 82 -~~~~~~~~~~~l~~~L~------kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~-~~v~~~~-~~~~~~~ 150 (577)
.....+.+ +.+.+... ++-++|+|++..- .+.+.+...+........+|++|.+ ..+.... .....++
T Consensus 94 a~~~gid~i-R~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR~~vv~ 172 (472)
T PRK14962 94 ASNRGIDEI-RKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVIE 172 (472)
T ss_pred cccCCHHHH-HHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcCcEEEE
Confidence 11122322 23444433 4458999999653 3455554444333334444444443 3443322 2245889
Q ss_pred cCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCC-CchHHHHHHHHH
Q 037229 151 MECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGG-LPLVLVTTARAM 203 (577)
Q Consensus 151 l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~g-lPLai~~~g~~L 203 (577)
+.+++.++....+...+..... .--++....|++.++| ++.|+..+-.+.
T Consensus 173 f~~l~~~el~~~L~~i~~~egi---~i~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 173 FRNISDELIIKRLQEVAEAEGI---EIDREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred ECCccHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 9999999988888877643321 1123556778887754 567776665543
No 124
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=90.16 E-value=2.2 Score=46.64 Aligned_cols=161 Identities=14% Similarity=0.072 Sum_probs=92.6
Q ss_pred CCccccHHHHHHHHHHhhcCCCceEEEEEeccch----hHHHHHHHhCCCcc------------------------h---
Q 037229 32 DLTVGLESTFDQVWSCLVEEEQVGIIGLYGMEGW----IQEQIRRKLGLVDD------------------------L--- 80 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~~~~~vv~I~G~gGw----~~~~i~~~l~~~~~------------------------~--- 80 (577)
+++||.+..++.|.+++..+.-...+-++|..|. +.+.+++.+..... .
T Consensus 16 ddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEida 95 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDA 95 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEec
Confidence 5789999999999999988433456788999992 44444444432100 0
Q ss_pred hccCCHHHHHHHHHHhc-----c-ccEEEEEecCCChh--hhcccCCCCCCCCCCcEEEEEeCch-hhhhcC-CCCceEe
Q 037229 81 WARKGLEEKAMNIFGIL-----S-KEFVLCWMMCGSEL--ILTQMGVPVPNPKRMSKVLFTTRFV-EVYGHK-EADEMFR 150 (577)
Q Consensus 81 ~~~~~~~~~~~~l~~~L-----~-kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gsrIivTTR~~-~v~~~~-~~~~~~~ 150 (577)
......+.+.+ +.+.. . ++-++|+|++.... ..+.+...+-......++|++|.+. .+.... +-...+.
T Consensus 96 As~~gVd~IRe-lle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~~f~ 174 (709)
T PRK08691 96 ASNTGIDNIRE-VLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFV 174 (709)
T ss_pred cccCCHHHHHH-HHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHhhhh
Confidence 01122233322 22221 2 45689999996542 2344433333223345666666543 232111 1124678
Q ss_pred cCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCchHH
Q 037229 151 MECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLPLVL 196 (577)
Q Consensus 151 l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai 196 (577)
+..++.++....+.+.+-..... --.+....|++.++|-+.-+
T Consensus 175 f~~Ls~eeI~~~L~~Il~kEgi~---id~eAL~~Ia~~A~GslRdA 217 (709)
T PRK08691 175 LRNMTAQQVADHLAHVLDSEKIA---YEPPALQLLGRAAAGSMRDA 217 (709)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCC---cCHHHHHHHHHHhCCCHHHH
Confidence 88999999888888766443311 12356678889998877433
No 125
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.13 E-value=0.24 Score=28.56 Aligned_cols=19 Identities=37% Similarity=0.558 Sum_probs=10.8
Q ss_pred cCCCEEeccCCCCCccccc
Q 037229 346 VSLQHLDLSSSGILELPKE 364 (577)
Q Consensus 346 ~~L~~L~L~~~~i~~lp~~ 364 (577)
++|++|+|++|.|+.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4555566666555555544
No 126
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.13 E-value=0.24 Score=28.56 Aligned_cols=19 Identities=37% Similarity=0.558 Sum_probs=10.8
Q ss_pred cCCCEEeccCCCCCccccc
Q 037229 346 VSLQHLDLSSSGILELPKE 364 (577)
Q Consensus 346 ~~L~~L~L~~~~i~~lp~~ 364 (577)
++|++|+|++|.|+.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4555566666555555544
No 127
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=89.94 E-value=2.1 Score=42.67 Aligned_cols=134 Identities=7% Similarity=-0.049 Sum_probs=76.6
Q ss_pred CCccccHHHHHHHHHHhhcCCCceEEEEEeccch----hHHHHHHHhCCCcchh--ccCCHHHHHHHHHHhcc------c
Q 037229 32 DLTVGLESTFDQVWSCLVEEEQVGIIGLYGMEGW----IQEQIRRKLGLVDDLW--ARKGLEEKAMNIFGILS------K 99 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~~~~~vv~I~G~gGw----~~~~i~~~l~~~~~~~--~~~~~~~~~~~l~~~L~------k 99 (577)
++++|.+...+.+..++..+.-..++-++|..|. +.+.+..+++...... .....+.+...+.+... .
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~~~~~~i~~~l~~~~~~~~~~~~ 100 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSDCRIDFVRNRLTRFASTVSLTGG 100 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCcccHHHHHHHHHHHHHhhcccCC
Confidence 6789999999999999987544567778999993 6666666654321111 11122222233333222 3
Q ss_pred cEEEEEecCCCh---hhhcccCCCCCCCCCCcEEEEEeCchhhh-hc-CCCCceEecCCCCHHHHHHHHHH
Q 037229 100 EFVLCWMMCGSE---LILTQMGVPVPNPKRMSKVLFTTRFVEVY-GH-KEADEMFRMECLRHEEAWKLFQM 165 (577)
Q Consensus 100 r~LlVLDdv~~~---~~~~~l~~~~~~~~~gsrIivTTR~~~v~-~~-~~~~~~~~l~~L~~~~~~~Lf~~ 165 (577)
+-++|+||+... +..+.+...+.....+.++|+||....-. .. ......+.+...+.++..+++..
T Consensus 101 ~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 101 GKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred CeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHHHHHHHH
Confidence 457899999654 22233333233334567888888654321 11 11123567777777777655443
No 128
>PRK04195 replication factor C large subunit; Provisional
Probab=89.76 E-value=2.6 Score=44.82 Aligned_cols=160 Identities=11% Similarity=0.024 Sum_probs=95.7
Q ss_pred CCccccHHHHHHHHHHhhcC---CCceEEEEEeccch----hHHHHHHHhCCCcchh---ccCCHHHHHHHHHHhc----
Q 037229 32 DLTVGLESTFDQVWSCLVEE---EQVGIIGLYGMEGW----IQEQIRRKLGLVDDLW---ARKGLEEKAMNIFGIL---- 97 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~---~~~~vv~I~G~gGw----~~~~i~~~l~~~~~~~---~~~~~~~~~~~l~~~L---- 97 (577)
++++|.++.++++.+|+..- ...+.+-|+|..|- +.+.++++++...-.. +..+.+.+...+....
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~~~i~~~i~~~~~~~s 93 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTADVIERVAGEAATSGS 93 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccHHHHHHHHHHhhccCc
Confidence 57899999999999998753 22678899999993 6677777775432111 1112233333332222
Q ss_pred --c-ccEEEEEecCCChh------hhcccCCCCCCCCCCcEEEEEeCchh-hhh-c-CCCCceEecCCCCHHHHHHHHHH
Q 037229 98 --S-KEFVLCWMMCGSEL------ILTQMGVPVPNPKRMSKVLFTTRFVE-VYG-H-KEADEMFRMECLRHEEAWKLFQM 165 (577)
Q Consensus 98 --~-kr~LlVLDdv~~~~------~~~~l~~~~~~~~~gsrIivTTR~~~-v~~-~-~~~~~~~~l~~L~~~~~~~Lf~~ 165 (577)
. ++-+||+|+++... .+..+...+. ..+..||+|+.+.. +.. . -.....+++.+++.++....+..
T Consensus 94 l~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~ 171 (482)
T PRK04195 94 LFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKR 171 (482)
T ss_pred ccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhHhccceEEEecCCCHHHHHHHHHH
Confidence 1 36689999997642 2344433332 12334666664322 111 1 12245788999999998888887
Q ss_pred hhCCCCCCCCCChhHHHHHHHHHcCCCchHH
Q 037229 166 KVGKETMDDHSDIPKLVEIVTKECGGLPLVL 196 (577)
Q Consensus 166 ~a~~~~~~~~~~~~~~~~~i~~~c~glPLai 196 (577)
.+.......+ .+....|++.++|-.-++
T Consensus 172 i~~~egi~i~---~eaL~~Ia~~s~GDlR~a 199 (482)
T PRK04195 172 ICRKEGIECD---DEALKEIAERSGGDLRSA 199 (482)
T ss_pred HHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 7644332222 466778888888855433
No 129
>PTZ00202 tuzin; Provisional
Probab=89.73 E-value=1.9 Score=44.25 Aligned_cols=130 Identities=12% Similarity=0.102 Sum_probs=78.0
Q ss_pred CCCccccHHHHHHHHHHhhcC--CCceEEEEEeccc---------------------------hhHHHHHHHhCCCcchh
Q 037229 31 SDLTVGLESTFDQVWSCLVEE--EQVGIIGLYGMEG---------------------------WIQEQIRRKLGLVDDLW 81 (577)
Q Consensus 31 ~~~~vGr~~~~~~i~~~L~~~--~~~~vv~I~G~gG---------------------------w~~~~i~~~l~~~~~~~ 81 (577)
..+++||+.+...+...|... +...++.|+|+.| .+++.|+.+++....
T Consensus 261 ~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNprg~eElLr~LL~ALGV~p~-- 338 (550)
T PTZ00202 261 IRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVRGTEDTLRSVVKALGVPNV-- 338 (550)
T ss_pred ccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCCCHHHHHHHHHHHcCCCCc--
Confidence 478999999999999988754 4567999999999 189999999987432
Q ss_pred ccCCHHHHHHHHHHhcc-------ccEEEEEecCCChhh----hcccCCCCCCCCCCcEEEEEeCchhhhhcCC--C-Cc
Q 037229 82 ARKGLEEKAMNIFGILS-------KEFVLCWMMCGSELI----LTQMGVPVPNPKRMSKVLFTTRFVEVYGHKE--A-DE 147 (577)
Q Consensus 82 ~~~~~~~~~~~l~~~L~-------kr~LlVLDdv~~~~~----~~~l~~~~~~~~~gsrIivTTR~~~v~~~~~--~-~~ 147 (577)
....++.+.|.+.|. ++.+||+-= .+-+. ..+. ..+.....-|.|++----+.+.-... + -.
T Consensus 339 --~~k~dLLrqIqeaLl~~~~e~GrtPVLII~l-reg~~l~rvyne~-v~la~drr~ch~v~evpleslt~~~~~lprld 414 (550)
T PTZ00202 339 --EACGDLLDFISEACRRAKKMNGETPLLVLKL-REGSSLQRVYNEV-VALACDRRLCHVVIEVPLESLTIANTLLPRLD 414 (550)
T ss_pred --ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEe-cCCCcHHHHHHHH-HHHHccchhheeeeeehHhhcchhcccCccce
Confidence 222344444444443 344555532 11111 1111 12222334466776655554422111 1 24
Q ss_pred eEecCCCCHHHHHHHHHHh
Q 037229 148 MFRMECLRHEEAWKLFQMK 166 (577)
Q Consensus 148 ~~~l~~L~~~~~~~Lf~~~ 166 (577)
.|-+..++.++|.+--.+.
T Consensus 415 f~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 415 FYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred eEecCCCCHHHHHHHHhhc
Confidence 6778888888887765553
No 130
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.58 E-value=4.5 Score=42.31 Aligned_cols=159 Identities=11% Similarity=0.023 Sum_probs=93.8
Q ss_pred CCccccHHHHHHHHHHhhcCCCceEEEEEeccch----hHHHHHHHhCCCc----------------------c--hh--
Q 037229 32 DLTVGLESTFDQVWSCLVEEEQVGIIGLYGMEGW----IQEQIRRKLGLVD----------------------D--LW-- 81 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~~~~~vv~I~G~gGw----~~~~i~~~l~~~~----------------------~--~~-- 81 (577)
+++||-+..+..|..++..+.-...+-++|..|- +.+.+++.+.... + ..
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEIda 97 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDA 97 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceeech
Confidence 6789999999999998888432345778999992 4444444443210 0 00
Q ss_pred -ccCCHHHHHHHHHHhcc------ccEEEEEecCCCh--hhhcccCCCCCCCCCCcEEE-EEeCchhhhhcCC-CCceEe
Q 037229 82 -ARKGLEEKAMNIFGILS------KEFVLCWMMCGSE--LILTQMGVPVPNPKRMSKVL-FTTRFVEVYGHKE-ADEMFR 150 (577)
Q Consensus 82 -~~~~~~~~~~~l~~~L~------kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIi-vTTR~~~v~~~~~-~~~~~~ 150 (577)
.....+. ++.+.+.+. +.-++|+|++... ..++.+...+-.......+| .||....+..... -...|.
T Consensus 98 as~~gVd~-IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~~~ 176 (484)
T PRK14956 98 ASNRGIEN-IRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFI 176 (484)
T ss_pred hhcccHHH-HHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhheee
Confidence 0111222 223333222 4458999999754 45777755554333344544 4444444432222 235799
Q ss_pred cCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCch
Q 037229 151 MECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLPL 194 (577)
Q Consensus 151 l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPL 194 (577)
+.+++.++..+.+.+.+..... .--.+....|++.++|-+-
T Consensus 177 f~~ls~~~i~~~L~~i~~~Egi---~~e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 177 FKKVPLSVLQDYSEKLCKIENV---QYDQEGLFWIAKKGDGSVR 217 (484)
T ss_pred ecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCChHH
Confidence 9999999888888776643321 1124566789999999873
No 131
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.33 E-value=0.047 Score=49.00 Aligned_cols=64 Identities=19% Similarity=0.357 Sum_probs=38.2
Q ss_pred CCCCCCCcEEEecccCCceEEecccCCCCCCCCCcc-CCCCCcceEeeccCCCcceec-----CCCcccEEecCCccccc
Q 037229 463 LAEMRQLDKLHIAFCTRLQEFEIECPGRNLMDLTWL-IFAPNFRKIDINQSSHMEEII-----CIDRLRKVSGGYKKILK 536 (577)
Q Consensus 463 l~~l~~L~~L~l~~~~~l~~l~l~~~~~~l~~l~~l-~~l~~L~~L~l~~~~~~~~~~-----~~~~L~~L~l~~~~~l~ 536 (577)
+..++.++.|.+.+|..+..--++ .+ +..|+|+.|+|++|+.+++-. ..++|+.|.|.+++...
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~----------~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v~ 190 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLE----------RLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYVA 190 (221)
T ss_pred HhccchhhhheeccccchhhHHHH----------HhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhhh
Confidence 456677777777777665432222 11 135778888888777665421 11777777777765544
No 132
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.91 E-value=4.3 Score=44.04 Aligned_cols=163 Identities=13% Similarity=0.104 Sum_probs=95.9
Q ss_pred CCccccHHHHHHHHHHhhcCCCceEEEEEeccch----hHHHHHHHhCCCc---------------------------c-
Q 037229 32 DLTVGLESTFDQVWSCLVEEEQVGIIGLYGMEGW----IQEQIRRKLGLVD---------------------------D- 79 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~~~~~vv~I~G~gGw----~~~~i~~~l~~~~---------------------------~- 79 (577)
+++||-+..++.|.+++..+.-...+-++|..|- +-+.+++.+.... +
T Consensus 16 ddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDv 95 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDY 95 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcc
Confidence 5789999999999999988533456677888882 3334444443210 0
Q ss_pred -hh---ccCCHHHHHHHHHHhc-----c-ccEEEEEecCCCh--hhhcccCCCCCCCCCCcE-EEEEeCchhhhhcCC-C
Q 037229 80 -LW---ARKGLEEKAMNIFGIL-----S-KEFVLCWMMCGSE--LILTQMGVPVPNPKRMSK-VLFTTRFVEVYGHKE-A 145 (577)
Q Consensus 80 -~~---~~~~~~~~~~~l~~~L-----~-kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsr-IivTTR~~~v~~~~~-~ 145 (577)
.. .....+++.+ +.+.+ . +.-++|+|++... ..++.|...+-.-....+ |++||....+...+. -
T Consensus 96 iEIdAas~~gVDdIRe-Lie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSR 174 (700)
T PRK12323 96 IEMDAASNRGVDEMAQ-LLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSR 174 (700)
T ss_pred eEecccccCCHHHHHH-HHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHH
Confidence 00 0112333332 22222 2 4458999999764 446666555543334455 455555555542222 1
Q ss_pred CceEecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCchHHHH
Q 037229 146 DEMFRMECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLPLVLVT 198 (577)
Q Consensus 146 ~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 198 (577)
...+.+..++.++..+.+.+.+...... .-.+....|++.++|.|.....
T Consensus 175 Cq~f~f~~ls~eei~~~L~~Il~~Egi~---~d~eAL~~IA~~A~Gs~RdALs 224 (700)
T PRK12323 175 CLQFNLKQMPPGHIVSHLDAILGEEGIA---HEVNALRLLAQAAQGSMRDALS 224 (700)
T ss_pred HHhcccCCCChHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHH
Confidence 3578999999999988888766433211 1234557789999998854433
No 133
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.52 E-value=8 Score=42.19 Aligned_cols=162 Identities=10% Similarity=0.050 Sum_probs=93.7
Q ss_pred CCccccHHHHHHHHHHhhcCCCceEEEEEeccch----hHHHHHHHhCCCcc----------------------hh----
Q 037229 32 DLTVGLESTFDQVWSCLVEEEQVGIIGLYGMEGW----IQEQIRRKLGLVDD----------------------LW---- 81 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~~~~~vv~I~G~gGw----~~~~i~~~l~~~~~----------------------~~---- 81 (577)
+++||-+..++.+..++..+.-...+-++|..|. +.+.+++.+..... ..
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~i~ 95 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDVIEMD 95 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeEEEEe
Confidence 6799999999999998887433355678899983 33333433321100 00
Q ss_pred --ccCCHHHHHHHHHHhcc------ccEEEEEecCCCh--hhhcccCCCCCCCCCCcEEEEEeCc-hhhhhcC-CCCceE
Q 037229 82 --ARKGLEEKAMNIFGILS------KEFVLCWMMCGSE--LILTQMGVPVPNPKRMSKVLFTTRF-VEVYGHK-EADEMF 149 (577)
Q Consensus 82 --~~~~~~~~~~~l~~~L~------kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~-~~v~~~~-~~~~~~ 149 (577)
.....+++ +.+.+.+. ++-++|+|++... ...+.|...+........+|++|.+ ..+.... .-...+
T Consensus 96 ~~~~~~vd~i-r~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR~~~i 174 (585)
T PRK14950 96 AASHTSVDDA-REIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSRCQRF 174 (585)
T ss_pred ccccCCHHHH-HHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhcccee
Confidence 11223332 23333322 4558999998643 3455554444333345666665543 3333221 223578
Q ss_pred ecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCchHHH
Q 037229 150 RMECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLPLVLV 197 (577)
Q Consensus 150 ~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 197 (577)
++..++.++....+...+...... --.+....+++.++|-+..+.
T Consensus 175 ~f~~l~~~el~~~L~~~a~~egl~---i~~eal~~La~~s~Gdlr~al 219 (585)
T PRK14950 175 DFHRHSVADMAAHLRKIAAAEGIN---LEPGALEAIARAATGSMRDAE 219 (585)
T ss_pred eCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHH
Confidence 889999998888887776443311 123567788899999775443
No 134
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.18 E-value=9.4 Score=41.60 Aligned_cols=161 Identities=13% Similarity=0.122 Sum_probs=94.9
Q ss_pred CCccccHHHHHHHHHHhhcCCCceEEEEEeccch----hHHHHHHHhCCCc---------------------------c-
Q 037229 32 DLTVGLESTFDQVWSCLVEEEQVGIIGLYGMEGW----IQEQIRRKLGLVD---------------------------D- 79 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~~~~~vv~I~G~gGw----~~~~i~~~l~~~~---------------------------~- 79 (577)
+++||-+..++.|.+++..+.-...+-++|..|- +.+.+++.+.... +
T Consensus 16 ~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g~h~D~ 95 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSGRFVDY 95 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcCCCCce
Confidence 6789999999999999888544466788999993 3333444432110 0
Q ss_pred -hh---ccCCHHHHHHHHHHhcc------ccEEEEEecCCCh--hhhcccCCCCCCCCCCcEEEEEe-CchhhhhcC-CC
Q 037229 80 -LW---ARKGLEEKAMNIFGILS------KEFVLCWMMCGSE--LILTQMGVPVPNPKRMSKVLFTT-RFVEVYGHK-EA 145 (577)
Q Consensus 80 -~~---~~~~~~~~~~~l~~~L~------kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTT-R~~~v~~~~-~~ 145 (577)
.. .....+++. .+.+... +.-++|+|+|... ..++.+...+-......++|++| ....+.... .-
T Consensus 96 ~eldaas~~~Vd~iR-eli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlSR 174 (618)
T PRK14951 96 TELDAASNRGVDEVQ-QLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSR 174 (618)
T ss_pred eecCcccccCHHHHH-HHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHHh
Confidence 00 112223332 2333322 2348999999764 44666655554433455666555 434443222 22
Q ss_pred CceEecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCchHH
Q 037229 146 DEMFRMECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLPLVL 196 (577)
Q Consensus 146 ~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai 196 (577)
...+++..++.++..+.+.+.+...... --.+....|++.++|-+--+
T Consensus 175 c~~~~f~~Ls~eei~~~L~~i~~~egi~---ie~~AL~~La~~s~GslR~a 222 (618)
T PRK14951 175 CLQFNLRPMAPETVLEHLTQVLAAENVP---AEPQALRLLARAARGSMRDA 222 (618)
T ss_pred ceeeecCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHH
Confidence 4689999999999988888776433311 12355677888898866433
No 135
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.17 E-value=0.11 Score=46.70 Aligned_cols=37 Identities=11% Similarity=0.067 Sum_probs=21.3
Q ss_pred CCcCcEecccccccccccchHHhcCCCCCcEEEeeee
Q 037229 368 LGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRF 404 (577)
Q Consensus 368 L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~ 404 (577)
.++|+.|++++|+.+++---..+.++++|+.|.+.+-
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDL 186 (221)
T ss_pred ccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCc
Confidence 3566677777666555443323556666666666544
No 136
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.07 E-value=7.8 Score=42.37 Aligned_cols=159 Identities=10% Similarity=0.102 Sum_probs=93.9
Q ss_pred CCccccHHHHHHHHHHhhcCCCceEEEEEeccch----hHHHHHHHhCCCc----------------------ch---h-
Q 037229 32 DLTVGLESTFDQVWSCLVEEEQVGIIGLYGMEGW----IQEQIRRKLGLVD----------------------DL---W- 81 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~~~~~vv~I~G~gGw----~~~~i~~~l~~~~----------------------~~---~- 81 (577)
+++||-+..++.+..++..+.-...+-++|..|+ +.+.++..+.... .+ .
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~~ld 96 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIHELD 96 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceEEec
Confidence 6799999999999999988444456789999995 2333333332100 00 0
Q ss_pred --ccCCHHHHHHHHHHhcc------ccEEEEEecCCCh--hhhcccCCCCCCCCCCcEEEE-EeCchhhhhcC-CCCceE
Q 037229 82 --ARKGLEEKAMNIFGILS------KEFVLCWMMCGSE--LILTQMGVPVPNPKRMSKVLF-TTRFVEVYGHK-EADEMF 149 (577)
Q Consensus 82 --~~~~~~~~~~~l~~~L~------kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiv-TTR~~~v~~~~-~~~~~~ 149 (577)
+..+.+++...+ +.+. ++=++|+|++... ..++.|...+..-...+.+|+ ||+...+.... .-..++
T Consensus 97 ~~~~~~vd~Ir~li-~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SRc~iv 175 (614)
T PRK14971 97 AASNNSVDDIRNLI-EQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIF 175 (614)
T ss_pred ccccCCHHHHHHHH-HHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhhhhee
Confidence 011233333333 2222 4458899998654 346666555544344566555 44545554332 234689
Q ss_pred ecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCch
Q 037229 150 RMECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLPL 194 (577)
Q Consensus 150 ~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPL 194 (577)
++.+++.++....+...+-..... --.+....|+..++|-.-
T Consensus 176 ~f~~ls~~ei~~~L~~ia~~egi~---i~~~al~~La~~s~gdlr 217 (614)
T PRK14971 176 DFNRIQVADIVNHLQYVASKEGIT---AEPEALNVIAQKADGGMR 217 (614)
T ss_pred ecCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHH
Confidence 999999999988888766433311 113456778888888553
No 137
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.98 E-value=5.8 Score=42.99 Aligned_cols=168 Identities=11% Similarity=0.086 Sum_probs=98.8
Q ss_pred CCccccHHHHHHHHHHhhcCCCceEEEEEeccch----hHHHHHHHhCCCc---------------------c-h--hc-
Q 037229 32 DLTVGLESTFDQVWSCLVEEEQVGIIGLYGMEGW----IQEQIRRKLGLVD---------------------D-L--WA- 82 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~~~~~vv~I~G~gGw----~~~~i~~~l~~~~---------------------~-~--~~- 82 (577)
+++||-+..++.|.+.+..+.-...+-++|..|- +.+.+++.+.... . . .+
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~eId~ 95 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVVEIDG 95 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceEEEec
Confidence 6789999998888888877433467778999992 4444444443210 0 0 00
Q ss_pred --cCCHHHHHHHHHHhcc------ccEEEEEecCCCh--hhhcccCCCCCCCCCCcEEEEEeCc-hhhhhcC-CCCceEe
Q 037229 83 --RKGLEEKAMNIFGILS------KEFVLCWMMCGSE--LILTQMGVPVPNPKRMSKVLFTTRF-VEVYGHK-EADEMFR 150 (577)
Q Consensus 83 --~~~~~~~~~~l~~~L~------kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~-~~v~~~~-~~~~~~~ 150 (577)
....+++ +.+.+.+. ++-++|+|++... ..++.|...+........+|++|.+ ..+.... .-...++
T Consensus 96 a~~~~Id~i-R~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRcq~i~ 174 (624)
T PRK14959 96 ASNRGIDDA-KRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFT 174 (624)
T ss_pred ccccCHHHH-HHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhhhccc
Confidence 1122222 23333332 4568999999654 4455565554332334556665544 4443222 2235789
Q ss_pred cCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCC-chHHHHHHHHH
Q 037229 151 MECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGL-PLVLVTTARAM 203 (577)
Q Consensus 151 l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~gl-PLai~~~g~~L 203 (577)
+.+++.++....+...+...... --.+....|++.++|- -.|+..+...+
T Consensus 175 F~pLs~~eL~~~L~~il~~egi~---id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 175 FTRLSEAGLEAHLTKVLGREGVD---YDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99999999998888766443311 1235677788889885 56777666544
No 138
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=87.36 E-value=9.5 Score=42.16 Aligned_cols=163 Identities=13% Similarity=0.099 Sum_probs=94.4
Q ss_pred CCccccHHHHHHHHHHhhcCCCceEEEEEeccch----hHHHHHHHhCCCcc------------------h---hcc---
Q 037229 32 DLTVGLESTFDQVWSCLVEEEQVGIIGLYGMEGW----IQEQIRRKLGLVDD------------------L---WAR--- 83 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~~~~~vv~I~G~gGw----~~~~i~~~l~~~~~------------------~---~~~--- 83 (577)
+++||-+..++.+.+++..+.-...+-++|+.|. +.+.++..+..... . .+.
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaasn 97 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAASN 97 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEecccc
Confidence 5789999999999999988544456678999994 44444444432110 0 000
Q ss_pred CCHHHHHHHHHHhcc------ccEEEEEecCCCh--hhhcccCCCCCCCCCCcE-EEEEeCchhhhhc-CCCCceEecCC
Q 037229 84 KGLEEKAMNIFGILS------KEFVLCWMMCGSE--LILTQMGVPVPNPKRMSK-VLFTTRFVEVYGH-KEADEMFRMEC 153 (577)
Q Consensus 84 ~~~~~~~~~l~~~L~------kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsr-IivTTR~~~v~~~-~~~~~~~~l~~ 153 (577)
...++ ++.+.+.+. ++-++|+|++... ..+..+...+-....... |++||+...+... ..-...+++.+
T Consensus 98 ~~vd~-IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq~ieF~~ 176 (725)
T PRK07133 98 NGVDE-IRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQRFNFRR 176 (725)
T ss_pred CCHHH-HHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhceeEEccC
Confidence 11222 233333333 3458899998643 345556544433333444 4455555555432 22235899999
Q ss_pred CCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCc-hHHHH
Q 037229 154 LRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLP-LVLVT 198 (577)
Q Consensus 154 L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~ 198 (577)
++.++....+...+-.... .--.+.+..+++.++|-+ .|+..
T Consensus 177 L~~eeI~~~L~~il~kegI---~id~eAl~~LA~lS~GslR~Alsl 219 (725)
T PRK07133 177 ISEDEIVSRLEFILEKENI---SYEKNALKLIAKLSSGSLRDALSI 219 (725)
T ss_pred CCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 9999988888775533221 111345677888898865 44443
No 139
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=87.14 E-value=17 Score=38.84 Aligned_cols=163 Identities=14% Similarity=0.101 Sum_probs=96.4
Q ss_pred CCccccHHHHHHHHHHhhcCCCceEEEEEeccch----hHHHHHHHhCCCcc------------------------hhc-
Q 037229 32 DLTVGLESTFDQVWSCLVEEEQVGIIGLYGMEGW----IQEQIRRKLGLVDD------------------------LWA- 82 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~~~~~vv~I~G~gGw----~~~~i~~~l~~~~~------------------------~~~- 82 (577)
+++||-+..++.+...+..+.-..+.-++|..|. +.+.++..+..... ..+
T Consensus 14 deiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~elda 93 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDA 93 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEecc
Confidence 5799999999999999987444456678999994 44444444421100 001
Q ss_pred --cCCHHHHHHHHHHh--cc---ccEEEEEecCCCh--hhhcccCCCCCCCCCCcEEEEEeCch-hhhhcC-CCCceEec
Q 037229 83 --RKGLEEKAMNIFGI--LS---KEFVLCWMMCGSE--LILTQMGVPVPNPKRMSKVLFTTRFV-EVYGHK-EADEMFRM 151 (577)
Q Consensus 83 --~~~~~~~~~~l~~~--L~---kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~~-~v~~~~-~~~~~~~l 151 (577)
....+++.+.+... .. ++-++|+|++... +..+.+...+-.....+++|++|.+. .+.... .-...+++
T Consensus 94 as~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SRc~~~~F 173 (535)
T PRK08451 94 ASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHFRF 173 (535)
T ss_pred ccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhhceeEEc
Confidence 11234444444321 11 3458899999654 33555544443334456767666553 222111 12458899
Q ss_pred CCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCchHHH
Q 037229 152 ECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLPLVLV 197 (577)
Q Consensus 152 ~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 197 (577)
.+++.++....+.+.+-.... .--.+....|++.++|-+--+.
T Consensus 174 ~~Ls~~ei~~~L~~Il~~EGi---~i~~~Al~~Ia~~s~GdlR~al 216 (535)
T PRK08451 174 KQIPQNSIISHLKTILEKEGV---SYEPEALEILARSGNGSLRDTL 216 (535)
T ss_pred CCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCcHHHHH
Confidence 999999988888766643331 1124567788899999874443
No 140
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=87.14 E-value=3.5 Score=39.87 Aligned_cols=166 Identities=16% Similarity=0.136 Sum_probs=102.1
Q ss_pred CCCccccHHHHHHHHHHhhcCCCceEEEEEeccch----hHHHHHHHhCCCcc----hh-ccCCHHHHHHHHHHh-----
Q 037229 31 SDLTVGLESTFDQVWSCLVEEEQVGIIGLYGMEGW----IQEQIRRKLGLVDD----LW-ARKGLEEKAMNIFGI----- 96 (577)
Q Consensus 31 ~~~~vGr~~~~~~i~~~L~~~~~~~vv~I~G~gGw----~~~~i~~~l~~~~~----~~-~~~~~~~~~~~l~~~----- 96 (577)
.++++|-+..+..+.+.+.. ......-.+|+.|= -....++++..+.. .+ ...+.+..+..+++.
T Consensus 35 ~de~~gQe~vV~~L~~a~~~-~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Kik~fa 113 (346)
T KOG0989|consen 35 FDELAGQEHVVQVLKNALLR-RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKIKNFA 113 (346)
T ss_pred HHhhcchHHHHHHHHHHHhh-cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhhcCHH
Confidence 46789999999999999998 88888999999991 23333334433110 00 011111111111111
Q ss_pred -cc-----------cc-EEEEEecCCCh--hhhcccCCCCCCCCCCcEE-EEEeCchhhhhcCC-CCceEecCCCCHHHH
Q 037229 97 -LS-----------KE-FVLCWMMCGSE--LILTQMGVPVPNPKRMSKV-LFTTRFVEVYGHKE-ADEMFRMECLRHEEA 159 (577)
Q Consensus 97 -L~-----------kr-~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrI-ivTTR~~~v~~~~~-~~~~~~l~~L~~~~~ 159 (577)
+. +. -.+|||++... +.|..+...+.+..+-+|. +||+--..+-.... --..|...+|.+++.
T Consensus 114 kl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~~i 193 (346)
T KOG0989|consen 114 KLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDEDI 193 (346)
T ss_pred HHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCcchHHH
Confidence 11 22 36889999875 6799998887766666664 44444333322221 134688999999999
Q ss_pred HHHHHHhhCCCCCCCCCChhHHHHHHHHHcCC-CchHHHHHH
Q 037229 160 WKLFQMKVGKETMDDHSDIPKLVEIVTKECGG-LPLVLVTTA 200 (577)
Q Consensus 160 ~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~g-lPLai~~~g 200 (577)
..-+...+-.+.... .++..+.|++.++| +--|+.++-
T Consensus 194 v~rL~~Ia~~E~v~~---d~~al~~I~~~S~GdLR~Ait~Lq 232 (346)
T KOG0989|consen 194 VDRLEKIASKEGVDI---DDDALKLIAKISDGDLRRAITTLQ 232 (346)
T ss_pred HHHHHHHHHHhCCCC---CHHHHHHHHHHcCCcHHHHHHHHH
Confidence 988888886554222 24667789999988 445555543
No 141
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=87.13 E-value=5.6 Score=40.94 Aligned_cols=158 Identities=11% Similarity=0.070 Sum_probs=87.6
Q ss_pred CCccccHHHHHHHHHHhhcC------------CCceEEEEEeccc----hhHHHHHHHhCCCcchh--------ccCCHH
Q 037229 32 DLTVGLESTFDQVWSCLVEE------------EQVGIIGLYGMEG----WIQEQIRRKLGLVDDLW--------ARKGLE 87 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~------------~~~~vv~I~G~gG----w~~~~i~~~l~~~~~~~--------~~~~~~ 87 (577)
+++.|.+..+++|.+.+... ...+-+-++|..| .+.+.++..+....-.. ......
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ge~~ 224 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGEGP 224 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcchhH
Confidence 56889999999988876421 2356788999999 36666666654432100 001111
Q ss_pred HHHHHHHHhcc--ccEEEEEecCCChh----------------hhcccCCCCCC--CCCCcEEEEEeCchhhhhc--C--
Q 037229 88 EKAMNIFGILS--KEFVLCWMMCGSEL----------------ILTQMGVPVPN--PKRMSKVLFTTRFVEVYGH--K-- 143 (577)
Q Consensus 88 ~~~~~l~~~L~--kr~LlVLDdv~~~~----------------~~~~l~~~~~~--~~~gsrIivTTR~~~v~~~--~-- 143 (577)
...+.+....+ ...+|++|+++... .+..+...+.. ...+..||.||...+.... .
T Consensus 225 ~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~ 304 (398)
T PTZ00454 225 RMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRP 304 (398)
T ss_pred HHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCC
Confidence 22333333333 67899999986320 01122112211 1235678888876554321 2
Q ss_pred -CCCceEecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCc
Q 037229 144 -EADEMFRMECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLP 193 (577)
Q Consensus 144 -~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP 193 (577)
.-+..+++...+.++-.++|..+..........++. .+++...|+-
T Consensus 305 GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~----~la~~t~g~s 351 (398)
T PTZ00454 305 GRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLE----DFVSRPEKIS 351 (398)
T ss_pred CcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHH----HHHHHcCCCC
Confidence 234568888888888888888766433222222333 4455565653
No 142
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.78 E-value=0.56 Score=26.92 Aligned_cols=22 Identities=27% Similarity=0.276 Sum_probs=18.3
Q ss_pred CCcCcEecccccccccccchHHh
Q 037229 368 LGNLACLNLENTSSHGTITRQLR 390 (577)
Q Consensus 368 L~~L~~L~l~~~~~l~~lp~~~i 390 (577)
|++|++|++.+| .++.+|.+++
T Consensus 1 L~~L~~L~L~~N-~l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNN-QLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCC-cCCcCCHHHc
Confidence 568999999999 8999998744
No 143
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.78 E-value=0.56 Score=26.92 Aligned_cols=22 Identities=27% Similarity=0.276 Sum_probs=18.3
Q ss_pred CCcCcEecccccccccccchHHh
Q 037229 368 LGNLACLNLENTSSHGTITRQLR 390 (577)
Q Consensus 368 L~~L~~L~l~~~~~l~~lp~~~i 390 (577)
|++|++|++.+| .++.+|.+++
T Consensus 1 L~~L~~L~L~~N-~l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNN-QLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCC-cCCcCCHHHc
Confidence 568999999999 8999998744
No 144
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=86.49 E-value=8.5 Score=41.87 Aligned_cols=164 Identities=12% Similarity=0.089 Sum_probs=95.1
Q ss_pred CCCccccHHHHHHHHHHhhcCCCceEEEEEeccch----hHHHHHHHhCCCcc---------------------------
Q 037229 31 SDLTVGLESTFDQVWSCLVEEEQVGIIGLYGMEGW----IQEQIRRKLGLVDD--------------------------- 79 (577)
Q Consensus 31 ~~~~vGr~~~~~~i~~~L~~~~~~~vv~I~G~gGw----~~~~i~~~l~~~~~--------------------------- 79 (577)
.+++||.+..++.+.+++..+.-..-+-++|..|. +.+.+++.+.....
T Consensus 23 f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~D 102 (598)
T PRK09111 23 FDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHVD 102 (598)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCCCc
Confidence 36789999999999999988544446778898883 33333333321100
Q ss_pred --h---hccCCHHHHHHHHHHhcc------ccEEEEEecCCCh--hhhcccCCCCCCCCCCcEEEEEe-CchhhhhcCC-
Q 037229 80 --L---WARKGLEEKAMNIFGILS------KEFVLCWMMCGSE--LILTQMGVPVPNPKRMSKVLFTT-RFVEVYGHKE- 144 (577)
Q Consensus 80 --~---~~~~~~~~~~~~l~~~L~------kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTT-R~~~v~~~~~- 144 (577)
. ......+++. .+.+.+. ++-++|+|++... ...+.|...+-.-...+.+|++| ....+...+.
T Consensus 103 v~e~~a~s~~gvd~IR-eIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~S 181 (598)
T PRK09111 103 VLEMDAASHTGVDDIR-EIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLS 181 (598)
T ss_pred eEEecccccCCHHHHH-HHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHHh
Confidence 0 0112233322 2323332 3457999998654 33555544443334456665554 4444432222
Q ss_pred CCceEecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCchHHHH
Q 037229 145 ADEMFRMECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLPLVLVT 198 (577)
Q Consensus 145 ~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 198 (577)
-...+++..++.++....+.+.+-...... -.+....|++.++|-+.-+..
T Consensus 182 Rcq~~~f~~l~~~el~~~L~~i~~kegi~i---~~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 182 RCQRFDLRRIEADVLAAHLSRIAAKEGVEV---EDEALALIARAAEGSVRDGLS 232 (598)
T ss_pred heeEEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHH
Confidence 235789999999998888887764332111 135667788999998755433
No 145
>PF14516 AAA_35: AAA-like domain
Probab=86.45 E-value=29 Score=34.79 Aligned_cols=133 Identities=16% Similarity=0.087 Sum_probs=77.5
Q ss_pred hHHHHHHHhCCCcch---h--ccCCHHHHHHHHHHhc-c---ccEEEEEecCCChh--------------hhcccCCCCC
Q 037229 66 IQEQIRRKLGLVDDL---W--ARKGLEEKAMNIFGIL-S---KEFVLCWMMCGSEL--------------ILTQMGVPVP 122 (577)
Q Consensus 66 ~~~~i~~~l~~~~~~---~--~~~~~~~~~~~l~~~L-~---kr~LlVLDdv~~~~--------------~~~~l~~~~~ 122 (577)
+...|.++++..... + ...+.......+.+.+ . ++.+|++|+|+..- .|..-+..-+
T Consensus 85 ~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~ 164 (331)
T PF14516_consen 85 FCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNP 164 (331)
T ss_pred HHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCc
Confidence 777888888765421 1 1223344455555543 3 89999999997531 1322222111
Q ss_pred CCCCCcEEEEEeCchhh-hhc----CCCCceEecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCchHHH
Q 037229 123 NPKRMSKVLFTTRFVEV-YGH----KEADEMFRMECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLPLVLV 197 (577)
Q Consensus 123 ~~~~gsrIivTTR~~~v-~~~----~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 197 (577)
...+=+=|++.+....+ ... ......++|..++.+|...|...+-..-. ....+.+....+|+|--+.
T Consensus 165 ~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~~-------~~~~~~l~~~tgGhP~Lv~ 237 (331)
T PF14516_consen 165 IWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEFS-------QEQLEQLMDWTGGHPYLVQ 237 (331)
T ss_pred ccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccCC-------HHHHHHHHHHHCCCHHHHH
Confidence 11111122222211111 111 12245788999999999999887643211 2237889999999999999
Q ss_pred HHHHHHhc
Q 037229 198 TTARAMAY 205 (577)
Q Consensus 198 ~~g~~L~~ 205 (577)
.++..+..
T Consensus 238 ~~~~~l~~ 245 (331)
T PF14516_consen 238 KACYLLVE 245 (331)
T ss_pred HHHHHHHH
Confidence 88888866
No 146
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=86.35 E-value=8.4 Score=43.60 Aligned_cols=159 Identities=14% Similarity=0.125 Sum_probs=92.9
Q ss_pred CCccccHHHHHHHHHHhhcCCCceEEEEEeccch----hHHHHHHHhCCCc----------------------c----hh
Q 037229 32 DLTVGLESTFDQVWSCLVEEEQVGIIGLYGMEGW----IQEQIRRKLGLVD----------------------D----LW 81 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~~~~~vv~I~G~gGw----~~~~i~~~l~~~~----------------------~----~~ 81 (577)
+++||.+..++.|..++..+.-...+-++|..|. +.+.+++.+.... . ..
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~ei 94 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTEI 94 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEEe
Confidence 5789999999999999988533356778999994 3333444442100 0 00
Q ss_pred ---ccCCHHHHHHHHHHhc-----c-ccEEEEEecCCCh--hhhcccCCCCCCCCCCcEEEEEe-CchhhhhcCC-CCce
Q 037229 82 ---ARKGLEEKAMNIFGIL-----S-KEFVLCWMMCGSE--LILTQMGVPVPNPKRMSKVLFTT-RFVEVYGHKE-ADEM 148 (577)
Q Consensus 82 ---~~~~~~~~~~~l~~~L-----~-kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTT-R~~~v~~~~~-~~~~ 148 (577)
.....+++. .+++.+ . ++-++|||++... ..++.|...+..-...+.+|++| ....+...+. -...
T Consensus 95 daas~~~Vd~iR-~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc~~ 173 (824)
T PRK07764 95 DAASHGGVDDAR-ELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTHH 173 (824)
T ss_pred cccccCCHHHHH-HHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhheeE
Confidence 011233332 233322 2 4447889999764 44556655554444455655555 4444543322 2468
Q ss_pred EecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCch
Q 037229 149 FRMECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLPL 194 (577)
Q Consensus 149 ~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPL 194 (577)
|++..++.++..+.+.+.+-.... .--.+....|++.++|-+.
T Consensus 174 v~F~~l~~~~l~~~L~~il~~EGv---~id~eal~lLa~~sgGdlR 216 (824)
T PRK07764 174 YPFRLVPPEVMRGYLERICAQEGV---PVEPGVLPLVIRAGGGSVR 216 (824)
T ss_pred EEeeCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHH
Confidence 999999999888777765532221 1123455678888999763
No 147
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=86.23 E-value=9.7 Score=41.13 Aligned_cols=166 Identities=14% Similarity=0.131 Sum_probs=95.0
Q ss_pred CCccccHHHHHHHHHHhhcCCCceEEEEEeccch----hHHHHHHHhCCCc----------------------c--hhc-
Q 037229 32 DLTVGLESTFDQVWSCLVEEEQVGIIGLYGMEGW----IQEQIRRKLGLVD----------------------D--LWA- 82 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~~~~~vv~I~G~gGw----~~~~i~~~l~~~~----------------------~--~~~- 82 (577)
++++|.+..++.+.+.+..+.-...+-++|+.|. +.+.+++.+.... + ..+
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieIda 95 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVELDA 95 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEEecc
Confidence 6789999999999999877533456778999993 3333444332110 0 001
Q ss_pred --cCCHHHHHHHHHHhcc------ccEEEEEecCCCh--hhhcccCCCCCCCCCCcEEEEEe-Cchhhhhc-CCCCceEe
Q 037229 83 --RKGLEEKAMNIFGILS------KEFVLCWMMCGSE--LILTQMGVPVPNPKRMSKVLFTT-RFVEVYGH-KEADEMFR 150 (577)
Q Consensus 83 --~~~~~~~~~~l~~~L~------kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTT-R~~~v~~~-~~~~~~~~ 150 (577)
....+++ +.+.+... ++-++|+|++... ..++.+...+........+|++| ....+... ......++
T Consensus 96 as~igVd~I-ReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SRcq~ie 174 (605)
T PRK05896 96 ASNNGVDEI-RNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRYN 174 (605)
T ss_pred ccccCHHHH-HHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhhhhhcc
Confidence 1122222 22222222 3346999998653 44555555443333345555444 44444322 22245789
Q ss_pred cCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCc-hHHHHHHH
Q 037229 151 MECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLP-LVLVTTAR 201 (577)
Q Consensus 151 l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~g~ 201 (577)
+.+++.++....+...+....... -.+.+..+++.++|-+ .|+..+-.
T Consensus 175 F~~Ls~~eL~~~L~~il~kegi~I---s~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 175 FKKLNNSELQELLKSIAKKEKIKI---EDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 999999999888887664322111 1355678889999955 45544444
No 148
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=85.76 E-value=15 Score=39.83 Aligned_cols=161 Identities=10% Similarity=0.047 Sum_probs=96.5
Q ss_pred CCccccHHHHHHHHHHhhcCCCceEEEEEeccch----hHHHHHHHhCCCc---------------------ch---hc-
Q 037229 32 DLTVGLESTFDQVWSCLVEEEQVGIIGLYGMEGW----IQEQIRRKLGLVD---------------------DL---WA- 82 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~~~~~vv~I~G~gGw----~~~~i~~~l~~~~---------------------~~---~~- 82 (577)
+++||-+..++.+..++..+.-...+-++|..|+ +.+.+++.+.... .+ .+
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~~idg 95 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVIEIDG 95 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeEEecC
Confidence 6799999999999999988544456789999995 5555555553210 00 00
Q ss_pred --cCCHHHHHHHHHHhc-----c-ccEEEEEecCCCh--hhhcccCCCCCCCCCCcEEEEEeCc-hhhhhcC-CCCceEe
Q 037229 83 --RKGLEEKAMNIFGIL-----S-KEFVLCWMMCGSE--LILTQMGVPVPNPKRMSKVLFTTRF-VEVYGHK-EADEMFR 150 (577)
Q Consensus 83 --~~~~~~~~~~l~~~L-----~-kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~-~~v~~~~-~~~~~~~ 150 (577)
....+++. .+.+.+ . ++-++|+|++... ..++.+...+........+|.+|.. ..+.... .-...++
T Consensus 96 as~~~vddIr-~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SRc~~~~ 174 (563)
T PRK06647 96 ASNTSVQDVR-QIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQHFN 174 (563)
T ss_pred cccCCHHHHH-HHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHhceEEE
Confidence 12233332 232211 2 4558999998654 4466665555443445666655543 4443221 2235689
Q ss_pred cCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCchHH
Q 037229 151 MECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLPLVL 196 (577)
Q Consensus 151 l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai 196 (577)
+.+++.++..+.+...+..... .--.+....|++.++|-+-.+
T Consensus 175 f~~l~~~el~~~L~~i~~~egi---~id~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 175 FRLLSLEKIYNMLKKVCLEDQI---KYEDEALKWIAYKSTGSVRDA 217 (563)
T ss_pred ecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 9999999888888776643321 112356667888899876443
No 149
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=85.21 E-value=3.7 Score=46.14 Aligned_cols=132 Identities=14% Similarity=0.126 Sum_probs=73.5
Q ss_pred CCccccHHHHHHHHHHhhcCCCceEEEEEeccch----hHHHHHHHhCCC-------c-chh------------ccCCHH
Q 037229 32 DLTVGLESTFDQVWSCLVEEEQVGIIGLYGMEGW----IQEQIRRKLGLV-------D-DLW------------ARKGLE 87 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~~~~~vv~I~G~gGw----~~~~i~~~l~~~-------~-~~~------------~~~~~~ 87 (577)
++++||+.+++++++.|... ...-+-++|..|- +.+.++..+... . ... ...+.+
T Consensus 182 ~~~igr~~ei~~~~~~L~~~-~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e 260 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRR-KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFE 260 (731)
T ss_pred CcccCcHHHHHHHHHHHhcC-CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHH
Confidence 67999999999999988874 2233458899982 455555544110 0 000 011222
Q ss_pred HHHHHHHHhcc--ccEEEEEecCCChh-----------hhcccCCCCCCCCCC-cEEEEEeCchhhhhcC-------CCC
Q 037229 88 EKAMNIFGILS--KEFVLCWMMCGSEL-----------ILTQMGVPVPNPKRM-SKVLFTTRFVEVYGHK-------EAD 146 (577)
Q Consensus 88 ~~~~~l~~~L~--kr~LlVLDdv~~~~-----------~~~~l~~~~~~~~~g-srIivTTR~~~v~~~~-------~~~ 146 (577)
...+.+.+.++ ++.+|++|++.... .-+-++..+ .+| -++|-+|...+..... .-.
T Consensus 261 ~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l---~~g~i~~IgaTt~~e~~~~~~~d~al~rRf 337 (731)
T TIGR02639 261 ERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPAL---SSGKLRCIGSTTYEEYKNHFEKDRALSRRF 337 (731)
T ss_pred HHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHH---hCCCeEEEEecCHHHHHHHhhhhHHHHHhC
Confidence 33444444444 57899999985321 111222222 223 2444444432221111 113
Q ss_pred ceEecCCCCHHHHHHHHHHhh
Q 037229 147 EMFRMECLRHEEAWKLFQMKV 167 (577)
Q Consensus 147 ~~~~l~~L~~~~~~~Lf~~~a 167 (577)
..++++.++.++..+++....
T Consensus 338 ~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 338 QKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred ceEEeCCCCHHHHHHHHHHHH
Confidence 478999999999999998654
No 150
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=85.15 E-value=16 Score=34.24 Aligned_cols=168 Identities=6% Similarity=-0.066 Sum_probs=84.9
Q ss_pred CCcc-ccHH-HHHHHHHHhhcCCCceEEEEEeccc----hhHHHHHHHhCCCcchhccCCHHHHHHHHHHhccccEEEEE
Q 037229 32 DLTV-GLES-TFDQVWSCLVEEEQVGIIGLYGMEG----WIQEQIRRKLGLVDDLWARKGLEEKAMNIFGILSKEFVLCW 105 (577)
Q Consensus 32 ~~~v-Gr~~-~~~~i~~~L~~~~~~~vv~I~G~gG----w~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~kr~LlVL 105 (577)
++++ |... .+..+.++.........+.|+|..| -+.+.|..+...........+.......+ ......-++|+
T Consensus 18 d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~lii 96 (227)
T PRK08903 18 DNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLAF-DFDPEAELYAV 96 (227)
T ss_pred cccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHHH-hhcccCCEEEE
Confidence 3444 5533 4444444444323445678999999 25555555542111111111222222211 22223347899
Q ss_pred ecCCChh--hhcccCCCCCC-CCCCc-EEEEEeCchhhhh--------cCCCCceEecCCCCHHHHHHHHHHhhCCCCCC
Q 037229 106 MMCGSEL--ILTQMGVPVPN-PKRMS-KVLFTTRFVEVYG--------HKEADEMFRMECLRHEEAWKLFQMKVGKETMD 173 (577)
Q Consensus 106 Ddv~~~~--~~~~l~~~~~~-~~~gs-rIivTTR~~~v~~--------~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~ 173 (577)
||+.... .-+.+...+.. ...|. .||+|++...... .+.....+++.++++++-..++.+.+-...
T Consensus 97 Ddi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~-- 174 (227)
T PRK08903 97 DDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERG-- 174 (227)
T ss_pred eChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcC--
Confidence 9996432 22223222321 12344 3666666433221 222246789999998876666665432221
Q ss_pred CCCChhHHHHHHHHHcCCCchHHHHHHHHH
Q 037229 174 DHSDIPKLVEIVTKECGGLPLVLVTTARAM 203 (577)
Q Consensus 174 ~~~~~~~~~~~i~~~c~glPLai~~~g~~L 203 (577)
..--++....+++.+.|.+..+..+-..+
T Consensus 175 -v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 175 -LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred -CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 11223566777788888888776555444
No 151
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=85.08 E-value=9 Score=36.93 Aligned_cols=138 Identities=11% Similarity=-0.022 Sum_probs=71.9
Q ss_pred CCccccHHHHHHHHHHhhc----------C----CCceEEEEEeccch----hHHHHHHH---hCCCcc-hhccCCH---
Q 037229 32 DLTVGLESTFDQVWSCLVE----------E----EQVGIIGLYGMEGW----IQEQIRRK---LGLVDD-LWARKGL--- 86 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~----------~----~~~~vv~I~G~gGw----~~~~i~~~---l~~~~~-~~~~~~~--- 86 (577)
..++|.+..+++|.+.... + +...-+-++|..|= +.+.+++. .+.... ..-..+.
T Consensus 6 ~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l 85 (261)
T TIGR02881 6 SRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADL 85 (261)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHh
Confidence 4689999888877654321 1 23456778999992 33333333 221110 0000000
Q ss_pred -----HHHHHHHHHhcc--ccEEEEEecCCCh----------hhhcccCCCCCCCCCCcEEEEEeCchhhhh------cC
Q 037229 87 -----EEKAMNIFGILS--KEFVLCWMMCGSE----------LILTQMGVPVPNPKRMSKVLFTTRFVEVYG------HK 143 (577)
Q Consensus 87 -----~~~~~~l~~~L~--kr~LlVLDdv~~~----------~~~~~l~~~~~~~~~gsrIivTTR~~~v~~------~~ 143 (577)
.+....+.+.++ ..-+|++|++... +..+.+...+......-.+|+++....... ..
T Consensus 86 ~~~~~g~~~~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L 165 (261)
T TIGR02881 86 VGEYIGHTAQKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGL 165 (261)
T ss_pred hhhhccchHHHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHH
Confidence 111334455555 4568999999641 233444444433333335555654433211 00
Q ss_pred --CCCceEecCCCCHHHHHHHHHHhhCC
Q 037229 144 --EADEMFRMECLRHEEAWKLFQMKVGK 169 (577)
Q Consensus 144 --~~~~~~~l~~L~~~~~~~Lf~~~a~~ 169 (577)
.....++++.++.++-.+++.+.+..
T Consensus 166 ~sRf~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 166 RSRFPISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred HhccceEEEECCCCHHHHHHHHHHHHHH
Confidence 11346788899999888888877643
No 152
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=85.02 E-value=22 Score=35.89 Aligned_cols=163 Identities=10% Similarity=0.015 Sum_probs=93.0
Q ss_pred CCCccccHHHHHHHHHHhhcCCCceEEEEEeccc-------h-hHHHHHH----------------------HhCCC-cc
Q 037229 31 SDLTVGLESTFDQVWSCLVEEEQVGIIGLYGMEG-------W-IQEQIRR----------------------KLGLV-DD 79 (577)
Q Consensus 31 ~~~~vGr~~~~~~i~~~L~~~~~~~vv~I~G~gG-------w-~~~~i~~----------------------~l~~~-~~ 79 (577)
...++|-+...+.+...+..+.-...+-|+|..| | +.+.++. .+... .+
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~~~~hP 101 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIAQGAHP 101 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHHcCCCC
Confidence 4679999999999999998854445677888888 1 2222222 00000 00
Q ss_pred h---h------------ccCCHHHHHHHHHHhcc------ccEEEEEecCCCh--hhhcccCCCCCCCCCCcE-EEEEeC
Q 037229 80 L---W------------ARKGLEEKAMNIFGILS------KEFVLCWMMCGSE--LILTQMGVPVPNPKRMSK-VLFTTR 135 (577)
Q Consensus 80 ~---~------------~~~~~~~~~~~l~~~L~------kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsr-IivTTR 135 (577)
. . .....++ ++.+.+++. ++-++|+|++... ...+.+...+-....... |++|++
T Consensus 102 dl~~l~~~~~~~~~~~~~~I~vd~-iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~ 180 (351)
T PRK09112 102 NLLHITRPFDEKTGKFKTAITVDE-IRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHS 180 (351)
T ss_pred CEEEeecccccccccccccCCHHH-HHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECC
Confidence 0 0 0011222 334444443 4568999999764 233444333322222344 555555
Q ss_pred chhhhhcCC-CCceEecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCchHHHHH
Q 037229 136 FVEVYGHKE-ADEMFRMECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLPLVLVTT 199 (577)
Q Consensus 136 ~~~v~~~~~-~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 199 (577)
-..+..... -...+++.+++.++..+.+.+.... . . --.+....+++.++|.|.....+
T Consensus 181 ~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~-~---~-~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 181 SGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS-Q---G-SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred hhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc-c---C-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 444432222 1358999999999999998874321 1 1 11345678899999999765443
No 153
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.57 E-value=20 Score=39.14 Aligned_cols=162 Identities=9% Similarity=0.061 Sum_probs=92.6
Q ss_pred CCccccHHHHHHHHHHhhcCCCceEEEEEeccch----hHHHHHHHhCCCc------------c----------------
Q 037229 32 DLTVGLESTFDQVWSCLVEEEQVGIIGLYGMEGW----IQEQIRRKLGLVD------------D---------------- 79 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~~~~~vv~I~G~gGw----~~~~i~~~l~~~~------------~---------------- 79 (577)
+++||-+..++.+.+.+..+.-...+-++|..|- +.+.++..+.... +
T Consensus 16 ~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~g~~ 95 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDAGTS 95 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhccCC
Confidence 6789999999999998877433455778999992 3333333332210 0
Q ss_pred -h---h---ccCCHHHHHHHHHHhcc------ccEEEEEecCCCh--hhhcccCCCCCCCCCCcEEEE-EeCchhhhhc-
Q 037229 80 -L---W---ARKGLEEKAMNIFGILS------KEFVLCWMMCGSE--LILTQMGVPVPNPKRMSKVLF-TTRFVEVYGH- 142 (577)
Q Consensus 80 -~---~---~~~~~~~~~~~l~~~L~------kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiv-TTR~~~v~~~- 142 (577)
+ . .....+++. .+.+.+. .+-++|+|++... ...+.|...+..-...+.+|+ |++...+...
T Consensus 96 ~n~~~~d~~s~~~vd~Ir-~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI 174 (620)
T PRK14954 96 LNISEFDAASNNSVDDIR-QLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATI 174 (620)
T ss_pred CCeEEecccccCCHHHHH-HHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHH
Confidence 0 0 111233333 3333331 4557899998654 335555544443333455554 4444444432
Q ss_pred CCCCceEecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCc-hHHH
Q 037229 143 KEADEMFRMECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLP-LVLV 197 (577)
Q Consensus 143 ~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~ 197 (577)
......+++.+++.++....+...+-..... --.+.+..+++.++|-. .|+.
T Consensus 175 ~SRc~~vef~~l~~~ei~~~L~~i~~~egi~---I~~eal~~La~~s~Gdlr~al~ 227 (620)
T PRK14954 175 ASRCQRFNFKRIPLDEIQSQLQMICRAEGIQ---IDADALQLIARKAQGSMRDAQS 227 (620)
T ss_pred HhhceEEecCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHhCCCHHHHHH
Confidence 2335689999999998887777655322211 12356677888898844 3443
No 154
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=83.51 E-value=11 Score=35.58 Aligned_cols=108 Identities=11% Similarity=0.011 Sum_probs=62.9
Q ss_pred CCCccccHHHHHHHHHH---hhcCCCceEEEEEeccc----hhHHHHHHHhCCCcc------hhccCCHHHHHHHHHHhc
Q 037229 31 SDLTVGLESTFDQVWSC---LVEEEQVGIIGLYGMEG----WIQEQIRRKLGLVDD------LWARKGLEEKAMNIFGIL 97 (577)
Q Consensus 31 ~~~~vGr~~~~~~i~~~---L~~~~~~~vv~I~G~gG----w~~~~i~~~l~~~~~------~~~~~~~~~~~~~l~~~L 97 (577)
.++++|.|..++.|++= +..+....-+-+||..| ++.+.++.......- ..+..+...+.+.++ -
T Consensus 26 l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~l~~l~~~l~--~ 103 (249)
T PF05673_consen 26 LDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGDLPELLDLLR--D 103 (249)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhccHHHHHHHHh--c
Confidence 37899999999998863 33333344455799998 677777777654321 012333444444443 1
Q ss_pred c-ccEEEEEecCCCh---hhhcccCCCCCCC---CC-CcEEEEEeCchhhh
Q 037229 98 S-KEFVLCWMMCGSE---LILTQMGVPVPNP---KR-MSKVLFTTRFVEVY 140 (577)
Q Consensus 98 ~-kr~LlVLDdv~~~---~~~~~l~~~~~~~---~~-gsrIivTTR~~~v~ 140 (577)
+ .||+|.+||..=+ .....++..+..+ .+ ...|..||--++..
T Consensus 104 ~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv 154 (249)
T PF05673_consen 104 RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLV 154 (249)
T ss_pred CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhcc
Confidence 3 8999999998633 3355554444321 22 23455555555553
No 155
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=82.94 E-value=10 Score=37.14 Aligned_cols=137 Identities=12% Similarity=0.012 Sum_probs=72.7
Q ss_pred CccccHHHHHHHHHHhhc---C-----CC------ceEEEEEeccc----hhHHHHHH---HhCCCcc-hhccCCHHHH-
Q 037229 33 LTVGLESTFDQVWSCLVE---E-----EQ------VGIIGLYGMEG----WIQEQIRR---KLGLVDD-LWARKGLEEK- 89 (577)
Q Consensus 33 ~~vGr~~~~~~i~~~L~~---~-----~~------~~vv~I~G~gG----w~~~~i~~---~l~~~~~-~~~~~~~~~~- 89 (577)
.++|.++.+++|.++... . .+ ..-+-++|..| .+.+.++. +.+.... ..-..+..++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~ 102 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLV 102 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHh
Confidence 589999988887664321 1 11 12466899999 23322222 2222110 0000011111
Q ss_pred -------HHHHHHhcc--ccEEEEEecCCCh-----------hhhcccCCCCCCCCCCcEEEEEeCchhhhhcC------
Q 037229 90 -------AMNIFGILS--KEFVLCWMMCGSE-----------LILTQMGVPVPNPKRMSKVLFTTRFVEVYGHK------ 143 (577)
Q Consensus 90 -------~~~l~~~L~--kr~LlVLDdv~~~-----------~~~~~l~~~~~~~~~gsrIivTTR~~~v~~~~------ 143 (577)
...+.+.+. ..-+|++|++... +.++.+...+.....+-+||.+|.....-...
T Consensus 103 ~~~~g~~~~~~~~~~~~a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L 182 (284)
T TIGR02880 103 GQYIGHTAPKTKEILKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGF 182 (284)
T ss_pred HhhcccchHHHHHHHHHccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHH
Confidence 123344444 5678999999621 22344444444444456777776543332111
Q ss_pred --CCCceEecCCCCHHHHHHHHHHhhCC
Q 037229 144 --EADEMFRMECLRHEEAWKLFQMKVGK 169 (577)
Q Consensus 144 --~~~~~~~l~~L~~~~~~~Lf~~~a~~ 169 (577)
.....+++.+++.+|-.+++.+.+-.
T Consensus 183 ~sR~~~~i~fp~l~~edl~~I~~~~l~~ 210 (284)
T TIGR02880 183 SSRVAHHVDFPDYSEAELLVIAGLMLKE 210 (284)
T ss_pred HhhCCcEEEeCCcCHHHHHHHHHHHHHH
Confidence 11356889999999999998887643
No 156
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=82.66 E-value=14 Score=40.51 Aligned_cols=161 Identities=14% Similarity=0.090 Sum_probs=90.9
Q ss_pred CCCccccHHHHHHHHHHhhcCCCceEEEEEeccch----hHHHHHHHhCCCc----------------------c--hhc
Q 037229 31 SDLTVGLESTFDQVWSCLVEEEQVGIIGLYGMEGW----IQEQIRRKLGLVD----------------------D--LWA 82 (577)
Q Consensus 31 ~~~~vGr~~~~~~i~~~L~~~~~~~vv~I~G~gGw----~~~~i~~~l~~~~----------------------~--~~~ 82 (577)
.+++||-+..++.+.+.+..+.-...+-++|..|- +.+.+++.+.... + ..+
T Consensus 15 f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ieid 94 (647)
T PRK07994 15 FAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEID 94 (647)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceeec
Confidence 36799999999999998887433345668888881 2333333332110 0 001
Q ss_pred ---cCCHHHHHHHHHHhcc------ccEEEEEecCCCh--hhhcccCCCCCCCCCCcEEEEEeCc-hhhhhcC-CCCceE
Q 037229 83 ---RKGLEEKAMNIFGILS------KEFVLCWMMCGSE--LILTQMGVPVPNPKRMSKVLFTTRF-VEVYGHK-EADEMF 149 (577)
Q Consensus 83 ---~~~~~~~~~~l~~~L~------kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~-~~v~~~~-~~~~~~ 149 (577)
....+++ +.+.+.+. ++-++|+|++... ...+.|...+-......++|.+|.+ ..+.... .-...|
T Consensus 95 aas~~~Vddi-R~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC~~~ 173 (647)
T PRK07994 95 AASRTKVEDT-RELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQF 173 (647)
T ss_pred ccccCCHHHH-HHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhheEe
Confidence 1223332 23333332 4458999999754 3455554444333334555554444 4443222 124689
Q ss_pred ecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCchH
Q 037229 150 RMECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLPLV 195 (577)
Q Consensus 150 ~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLa 195 (577)
.+.+++.++..+.+.+.+-.... ..-......|++.++|.+-.
T Consensus 174 ~f~~Ls~~ei~~~L~~il~~e~i---~~e~~aL~~Ia~~s~Gs~R~ 216 (647)
T PRK07994 174 HLKALDVEQIRQQLEHILQAEQI---PFEPRALQLLARAADGSMRD 216 (647)
T ss_pred eCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHH
Confidence 99999999998888876532221 11234556788899997643
No 157
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.85 E-value=27 Score=37.93 Aligned_cols=168 Identities=15% Similarity=0.097 Sum_probs=95.7
Q ss_pred CCccccHHHHHHHHHHhhcCCCceEEEEEeccch----hHHHHHHHhCCCc------------------------ch--h
Q 037229 32 DLTVGLESTFDQVWSCLVEEEQVGIIGLYGMEGW----IQEQIRRKLGLVD------------------------DL--W 81 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~~~~~vv~I~G~gGw----~~~~i~~~l~~~~------------------------~~--~ 81 (577)
+++||.+..++.|.+++..+.-...+-++|..|. +.+.++..+.... +. .
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dviei 92 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVVEL 92 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEEEe
Confidence 6799999999999999988544456778999993 3333333332110 00 0
Q ss_pred c---cCCHHHHHHHHHHhcc------ccEEEEEecCCCh--hhhcccCCCCCCCCCCcEEEE-EeCchhhhhcC-CCCce
Q 037229 82 A---RKGLEEKAMNIFGILS------KEFVLCWMMCGSE--LILTQMGVPVPNPKRMSKVLF-TTRFVEVYGHK-EADEM 148 (577)
Q Consensus 82 ~---~~~~~~~~~~l~~~L~------kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiv-TTR~~~v~~~~-~~~~~ 148 (577)
+ ....+++ +.+.+.+. ++-++|+|++... ...+.|...+........+|+ ||....+.... .-...
T Consensus 93 daas~~gvd~i-Rel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SRc~~ 171 (584)
T PRK14952 93 DAASHGGVDDT-RELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHH 171 (584)
T ss_pred ccccccCHHHH-HHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHhceE
Confidence 0 1122222 22333222 4458899998653 445555555544344555554 54445544322 22468
Q ss_pred EecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCc-hHHHHHHHHH
Q 037229 149 FRMECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLP-LVLVTTARAM 203 (577)
Q Consensus 149 ~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~g~~L 203 (577)
+++..++.++..+.+.+.+...... --.+....|++.++|-+ -|+..+-.++
T Consensus 172 ~~F~~l~~~~i~~~L~~i~~~egi~---i~~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 172 YPFRLLPPRTMRALIARICEQEGVV---VDDAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred EEeeCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 9999999999888777765433211 11345567788888865 4444444433
No 158
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.30 E-value=37 Score=36.06 Aligned_cols=162 Identities=10% Similarity=0.071 Sum_probs=92.4
Q ss_pred CCccccHHHHHHHHHHhhcCCCceEEEEEeccch----hHHHHHHHhCCCcc----hh----------------------
Q 037229 32 DLTVGLESTFDQVWSCLVEEEQVGIIGLYGMEGW----IQEQIRRKLGLVDD----LW---------------------- 81 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~~~~~vv~I~G~gGw----~~~~i~~~l~~~~~----~~---------------------- 81 (577)
.+++|-+..++.+.+++..+.-...+-++|..|. +.+.++..+..... .+
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eida 95 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDA 95 (486)
T ss_pred HHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeC
Confidence 5789999999999999988533455668999995 44444444431100 00
Q ss_pred -ccCCHHHHHHHHHHhcc------ccEEEEEecCCCh--hhhcccCCCCCCCCCCcEEEEEe-Cchhhhhc-CCCCceEe
Q 037229 82 -ARKGLEEKAMNIFGILS------KEFVLCWMMCGSE--LILTQMGVPVPNPKRMSKVLFTT-RFVEVYGH-KEADEMFR 150 (577)
Q Consensus 82 -~~~~~~~~~~~l~~~L~------kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTT-R~~~v~~~-~~~~~~~~ 150 (577)
.....+. .+.+.+.+. ++-++|+|++... ...+.+...+........+|++| +...+... ......+.
T Consensus 96 as~~gvd~-ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SRc~~i~ 174 (486)
T PRK14953 96 ASNRGIDD-IRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRCQRFI 174 (486)
T ss_pred ccCCCHHH-HHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHhceEEE
Confidence 0011221 233444332 4558999998653 33455544443333345555554 43333322 12235788
Q ss_pred cCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCchHHH
Q 037229 151 MECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLPLVLV 197 (577)
Q Consensus 151 l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 197 (577)
+.+++.++....+...+-.... .--.+....+++.++|-+-.+.
T Consensus 175 f~~ls~~el~~~L~~i~k~egi---~id~~al~~La~~s~G~lr~al 218 (486)
T PRK14953 175 FSKPTKEQIKEYLKRICNEEKI---EYEEKALDLLAQASEGGMRDAA 218 (486)
T ss_pred cCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHH
Confidence 9999999888877776543221 1123556678888888665443
No 159
>CHL00095 clpC Clp protease ATP binding subunit
Probab=79.65 E-value=4.7 Score=45.93 Aligned_cols=132 Identities=19% Similarity=0.126 Sum_probs=70.7
Q ss_pred CCccccHHHHHHHHHHhhcCCCceEEEEEeccch----hHHHHHHHhCCC-------c-c-------h-h----ccCCHH
Q 037229 32 DLTVGLESTFDQVWSCLVEEEQVGIIGLYGMEGW----IQEQIRRKLGLV-------D-D-------L-W----ARKGLE 87 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~~~~~vv~I~G~gGw----~~~~i~~~l~~~-------~-~-------~-~----~~~~~~ 87 (577)
++++||+++++++++.|...... -+-++|.+|- +.+.++..+... . . . . .....+
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~~-n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e 257 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTKN-NPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFE 257 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccccC-CeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHH
Confidence 67899999999999999875222 3348899982 334444433210 0 0 0 0 011222
Q ss_pred HHHHHHHHhcc--ccEEEEEecCCChh---------hhcccCCCCCCCCCC-cEEEEEeCchhhhhcC-------CCCce
Q 037229 88 EKAMNIFGILS--KEFVLCWMMCGSEL---------ILTQMGVPVPNPKRM-SKVLFTTRFVEVYGHK-------EADEM 148 (577)
Q Consensus 88 ~~~~~l~~~L~--kr~LlVLDdv~~~~---------~~~~l~~~~~~~~~g-srIivTTR~~~v~~~~-------~~~~~ 148 (577)
+..+.+.+.+. ++.+|++|++.... +...+..+. -.+| -++|-+|......... .....
T Consensus 258 ~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~--l~rg~l~~IgaTt~~ey~~~ie~D~aL~rRf~~ 335 (821)
T CHL00095 258 ERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPA--LARGELQCIGATTLDEYRKHIEKDPALERRFQP 335 (821)
T ss_pred HHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHH--HhCCCcEEEEeCCHHHHHHHHhcCHHHHhcceE
Confidence 33333444444 67899999994210 111111111 1223 3555555554432211 12346
Q ss_pred EecCCCCHHHHHHHHHHh
Q 037229 149 FRMECLRHEEAWKLFQMK 166 (577)
Q Consensus 149 ~~l~~L~~~~~~~Lf~~~ 166 (577)
+.+...+.++...++...
T Consensus 336 I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 336 VYVGEPSVEETIEILFGL 353 (821)
T ss_pred EecCCCCHHHHHHHHHHH
Confidence 788888988888877653
No 160
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=79.51 E-value=37 Score=36.80 Aligned_cols=160 Identities=11% Similarity=0.065 Sum_probs=91.5
Q ss_pred CCccccHHHHHHHHHHhhcCCCceEEEEEeccch----hHHHHHHHhCCCc---------------------ch---hc-
Q 037229 32 DLTVGLESTFDQVWSCLVEEEQVGIIGLYGMEGW----IQEQIRRKLGLVD---------------------DL---WA- 82 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~~~~~vv~I~G~gGw----~~~~i~~~l~~~~---------------------~~---~~- 82 (577)
+++||.+..++.+.+++..+.-...+-++|..|. +.+.++..+.... .+ .+
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~~~dv~eida 95 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGSLMDVIEIDA 95 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCCCCCeEEeec
Confidence 6799999999999999988544456667999993 4444444443211 00 00
Q ss_pred --cCCHHHHHHHHHHhcc------ccEEEEEecCCCh--hhhcccCCCCCCCCCCcEEEE-EeCchhhhhcC-CCCceEe
Q 037229 83 --RKGLEEKAMNIFGILS------KEFVLCWMMCGSE--LILTQMGVPVPNPKRMSKVLF-TTRFVEVYGHK-EADEMFR 150 (577)
Q Consensus 83 --~~~~~~~~~~l~~~L~------kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiv-TTR~~~v~~~~-~~~~~~~ 150 (577)
....+. ++.+++.+. ++-++|+|++... ..+..|...+........+|+ ||....+.... .....++
T Consensus 96 as~~~vd~-ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SRc~~~~ 174 (559)
T PRK05563 96 ASNNGVDE-IRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSRCQRFD 174 (559)
T ss_pred cccCCHHH-HHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhHheEEe
Confidence 012222 223333322 4558899998653 345555444433233444454 44444443222 2235788
Q ss_pred cCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCchH
Q 037229 151 MECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLPLV 195 (577)
Q Consensus 151 l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLa 195 (577)
+.+++.++....+...+-..... --.+....|++.++|-+..
T Consensus 175 f~~~~~~ei~~~L~~i~~~egi~---i~~~al~~ia~~s~G~~R~ 216 (559)
T PRK05563 175 FKRISVEDIVERLKYILDKEGIE---YEDEALRLIARAAEGGMRD 216 (559)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHH
Confidence 89999999888887766433211 1135567788888886543
No 161
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=79.26 E-value=7 Score=39.08 Aligned_cols=134 Identities=13% Similarity=0.108 Sum_probs=78.2
Q ss_pred CCccccHHHHHHHHHHhhcCC--CceEEEEEeccc-------------------h-----------hHHHHHHHhCCCcc
Q 037229 32 DLTVGLESTFDQVWSCLVEEE--QVGIIGLYGMEG-------------------W-----------IQEQIRRKLGLVDD 79 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~~--~~~vv~I~G~gG-------------------w-----------~~~~i~~~l~~~~~ 79 (577)
+.+.+||..++.+..++...+ -++.|-|+|-.| | +.++|+.+.+..+.
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL~~~~~~d~ 85 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKILNKSQLADK 85 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHHHHhccCCC
Confidence 578899999999999888763 345567888888 4 88888888853222
Q ss_pred hh-----ccCCHHHHHHHHHH--hcc---ccEEEEEecCCChhhhccc--------CCCCCCCCCCcEEEEEeCc--hhh
Q 037229 80 LW-----ARKGLEEKAMNIFG--ILS---KEFVLCWMMCGSELILTQM--------GVPVPNPKRMSKVLFTTRF--VEV 139 (577)
Q Consensus 80 ~~-----~~~~~~~~~~~l~~--~L~---kr~LlVLDdv~~~~~~~~l--------~~~~~~~~~gsrIivTTR~--~~v 139 (577)
.. ...+..+....+.+ ... +.++||||++....+.+.. ....+ .+-.+|+...-. ..-
T Consensus 86 dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~--~~~i~iils~~~~e~~y 163 (438)
T KOG2543|consen 86 DGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLN--EPTIVIILSAPSCEKQY 163 (438)
T ss_pred chhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhC--CCceEEEEeccccHHHh
Confidence 11 11233344555555 223 3789999999765443322 11111 122223322221 111
Q ss_pred hhcCCCCc--eEecCCCCHHHHHHHHHHhh
Q 037229 140 YGHKEADE--MFRMECLRHEEAWKLFQMKV 167 (577)
Q Consensus 140 ~~~~~~~~--~~~l~~L~~~~~~~Lf~~~a 167 (577)
...+++.. +.....-+.++-.+++.+.-
T Consensus 164 ~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 164 LINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred hcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 22244443 45667788888888887643
No 162
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.87 E-value=21 Score=38.17 Aligned_cols=161 Identities=11% Similarity=0.048 Sum_probs=90.2
Q ss_pred CCccccHHHHHHHHHHhhcCCCceEEEEEeccch----hHHHHHHHhCCCc---------------------------ch
Q 037229 32 DLTVGLESTFDQVWSCLVEEEQVGIIGLYGMEGW----IQEQIRRKLGLVD---------------------------DL 80 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~~~~~vv~I~G~gGw----~~~~i~~~l~~~~---------------------------~~ 80 (577)
+++||-+..++.+.+++..+.-...+-++|..|- +.+.+++.+.... +.
T Consensus 16 ~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eida 95 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDA 95 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcc
Confidence 5799999999999999988533345678899882 3333333332210 00
Q ss_pred hccCCHHHHHHHHHHhcc------ccEEEEEecCCCh--hhhcccCCCCCCCCCCcEEEEEeCc-hhhhhcC-CCCceEe
Q 037229 81 WARKGLEEKAMNIFGILS------KEFVLCWMMCGSE--LILTQMGVPVPNPKRMSKVLFTTRF-VEVYGHK-EADEMFR 150 (577)
Q Consensus 81 ~~~~~~~~~~~~l~~~L~------kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~-~~v~~~~-~~~~~~~ 150 (577)
......++.. .+.+.+. +.-++|+|+|... ...+.+...+.......++|++|.+ ..+.... .-...++
T Consensus 96 as~~~v~~iR-~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~~~~ 174 (509)
T PRK14958 96 ASRTKVEDTR-ELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFH 174 (509)
T ss_pred cccCCHHHHH-HHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhhhhh
Confidence 0122333332 2333222 3448899999763 3455554444333345666665544 3333221 1235688
Q ss_pred cCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCchHH
Q 037229 151 MECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLPLVL 196 (577)
Q Consensus 151 l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai 196 (577)
+.+++.++....+.+.+-..... --.+....|++.++|-+-.+
T Consensus 175 f~~l~~~~i~~~l~~il~~egi~---~~~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 175 LAQLPPLQIAAHCQHLLKEENVE---FENAALDLLARAANGSVRDA 217 (509)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCcHHHH
Confidence 99999888776665554332211 11344567888888876443
No 163
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=78.76 E-value=27 Score=32.59 Aligned_cols=169 Identities=15% Similarity=0.090 Sum_probs=90.0
Q ss_pred CCCccccHHHHHHHHHHhhcC----CCceEEEEEeccch----hHHHHHHHhCCCcchhcc---CCHHHHHHHHHHhccc
Q 037229 31 SDLTVGLESTFDQVWSCLVEE----EQVGIIGLYGMEGW----IQEQIRRKLGLVDDLWAR---KGLEEKAMNIFGILSK 99 (577)
Q Consensus 31 ~~~~vGr~~~~~~i~~~L~~~----~~~~vv~I~G~gGw----~~~~i~~~l~~~~~~~~~---~~~~~~~~~l~~~L~k 99 (577)
.+++||.+.-++.+.-++... +.+.-+-.||++|- +..-|++.++..-..... ....++...+ ..+++
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~~dl~~il-~~l~~ 101 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKAGDLAAIL-TNLKE 101 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SCHHHHHHH-HT--T
T ss_pred HHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhHHHHHHHH-HhcCC
Confidence 367999999998876555432 45677889999994 666666666654321111 1223333332 33455
Q ss_pred cEEEEEecCCCh--hh-------hcccCCCCC-CCCC-----------CcEEEEEeCchhhhhcCCCC--ceEecCCCCH
Q 037229 100 EFVLCWMMCGSE--LI-------LTQMGVPVP-NPKR-----------MSKVLFTTRFVEVYGHKEAD--EMFRMECLRH 156 (577)
Q Consensus 100 r~LlVLDdv~~~--~~-------~~~l~~~~~-~~~~-----------gsrIivTTR~~~v~~~~~~~--~~~~l~~L~~ 156 (577)
+-+|.+|.+-.- .+ .|+....+- ..+. =+-|=-|||...+......- -..+++..+.
T Consensus 102 ~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~ 181 (233)
T PF05496_consen 102 GDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSE 181 (233)
T ss_dssp T-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE----TH
T ss_pred CcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcceecchhcCCH
Confidence 667888999653 11 222111110 0111 13344588877665554442 3558999999
Q ss_pred HHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCchHHHHHHHHH
Q 037229 157 EEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLPLVLVTTARAM 203 (577)
Q Consensus 157 ~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L 203 (577)
+|-.++..+.|..-.. +--++.+.+|+++|.|-|--..-+-...
T Consensus 182 ~el~~Iv~r~a~~l~i---~i~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 182 EELAKIVKRSARILNI---EIDEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp HHHHHHHHHCCHCTT----EE-HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC---CcCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 9999999987743321 1234788999999999996554444333
No 164
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=78.67 E-value=21 Score=37.15 Aligned_cols=158 Identities=11% Similarity=0.098 Sum_probs=87.4
Q ss_pred CCccccHHHHHHHHHHhhcC------------CCceEEEEEeccc----hhHHHHHHHhCCCcchhcc--------CCHH
Q 037229 32 DLTVGLESTFDQVWSCLVEE------------EQVGIIGLYGMEG----WIQEQIRRKLGLVDDLWAR--------KGLE 87 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~------------~~~~vv~I~G~gG----w~~~~i~~~l~~~~~~~~~--------~~~~ 87 (577)
.++.|.+..+++|.+.+... ....-+.++|..| .+.+.++..+....-.... ....
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~Ge~~ 262 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGP 262 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcchHH
Confidence 45789999999998877421 2345677999999 3666666665432210000 0112
Q ss_pred HHHHHHHHhcc--ccEEEEEecCCChh----------------hhcccCCCCC--CCCCCcEEEEEeCchhhhhc--C--
Q 037229 88 EKAMNIFGILS--KEFVLCWMMCGSEL----------------ILTQMGVPVP--NPKRMSKVLFTTRFVEVYGH--K-- 143 (577)
Q Consensus 88 ~~~~~l~~~L~--kr~LlVLDdv~~~~----------------~~~~l~~~~~--~~~~gsrIivTTR~~~v~~~--~-- 143 (577)
.....+.+... ...+|+||+++... .+..+...+. ....+.+||.||...+.... .
T Consensus 263 ~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRp 342 (438)
T PTZ00361 263 KLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRP 342 (438)
T ss_pred HHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccC
Confidence 22333333333 67899999975320 0111111111 11235678888876555322 1
Q ss_pred -CCCceEecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCc
Q 037229 144 -EADEMFRMECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLP 193 (577)
Q Consensus 144 -~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP 193 (577)
.-+..+++...+.++..++|..++.........++. .++..+.|+-
T Consensus 343 GRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~----~la~~t~g~s 389 (438)
T PTZ00361 343 GRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLE----EFIMAKDELS 389 (438)
T ss_pred CeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHH----HHHHhcCCCC
Confidence 224578899999999999999876443322222333 3455555543
No 165
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=77.87 E-value=38 Score=36.14 Aligned_cols=158 Identities=9% Similarity=0.035 Sum_probs=84.3
Q ss_pred CCccccHHHHHHHHHHhh---cC--------CCceEEEEEeccc----hhHHHHHHHhCCCcchhcc---------CCHH
Q 037229 32 DLTVGLESTFDQVWSCLV---EE--------EQVGIIGLYGMEG----WIQEQIRRKLGLVDDLWAR---------KGLE 87 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~---~~--------~~~~vv~I~G~gG----w~~~~i~~~l~~~~~~~~~---------~~~~ 87 (577)
++++|.+..++++.+++. .. ...+=+-++|..| .+.+.++...+..--.... ....
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~ 134 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGAS 134 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcccHH
Confidence 678999888877766543 11 2234477899999 3777777766543211110 1111
Q ss_pred HHHHHHHHhcc-ccEEEEEecCCChh------------h----hcccCCCCC--CCCCCcEEEEEeCchhh-----hhcC
Q 037229 88 EKAMNIFGILS-KEFVLCWMMCGSEL------------I----LTQMGVPVP--NPKRMSKVLFTTRFVEV-----YGHK 143 (577)
Q Consensus 88 ~~~~~l~~~L~-kr~LlVLDdv~~~~------------~----~~~l~~~~~--~~~~gsrIivTTR~~~v-----~~~~ 143 (577)
.+...+..... ...+|++||++... . ...+...+. ....+-.||.||...+. .+.-
T Consensus 135 ~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~g 214 (495)
T TIGR01241 135 RVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPG 214 (495)
T ss_pred HHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCC
Confidence 22222222223 56899999995421 0 111111111 11234456666655432 1111
Q ss_pred CCCceEecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCc
Q 037229 144 EADEMFRMECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLP 193 (577)
Q Consensus 144 ~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP 193 (577)
.-+..+++...+.++-.++|..+.-....... .....+++.+.|+-
T Consensus 215 Rfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~----~~l~~la~~t~G~s 260 (495)
T TIGR01241 215 RFDRQVVVDLPDIKGREEILKVHAKNKKLAPD----VDLKAVARRTPGFS 260 (495)
T ss_pred cceEEEEcCCCCHHHHHHHHHHHHhcCCCCcc----hhHHHHHHhCCCCC
Confidence 23567888888888888888877644321111 12346777787754
No 166
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.85 E-value=18 Score=39.27 Aligned_cols=164 Identities=11% Similarity=0.048 Sum_probs=91.9
Q ss_pred CCccccHHHHHHHHHHhhcCCCceEEEEEeccch----hHHHHHHHhCCCcc---------------------h---hc-
Q 037229 32 DLTVGLESTFDQVWSCLVEEEQVGIIGLYGMEGW----IQEQIRRKLGLVDD---------------------L---WA- 82 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~~~~~vv~I~G~gGw----~~~~i~~~l~~~~~---------------------~---~~- 82 (577)
+++||.+..++.+.+++..+.-...+-++|..|. +.+.+++.+..... + .+
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~eid~ 95 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVDVFEIDG 95 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCCeeeeec
Confidence 6799999999999999888433456678999993 34444444432110 0 00
Q ss_pred --cCCHHHHHHHHHHhcc------ccEEEEEecCCCh--hhhcccCCCCCCCCCCcEEEE-EeCchhhhhcC-CCCceEe
Q 037229 83 --RKGLEEKAMNIFGILS------KEFVLCWMMCGSE--LILTQMGVPVPNPKRMSKVLF-TTRFVEVYGHK-EADEMFR 150 (577)
Q Consensus 83 --~~~~~~~~~~l~~~L~------kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiv-TTR~~~v~~~~-~~~~~~~ 150 (577)
....++ ++.+.+.++ ++-++|+|++... ...+.|...+-.......+|+ ||....+.... .-...++
T Consensus 96 ~s~~~v~~-ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SRc~~~~ 174 (576)
T PRK14965 96 ASNTGVDD-IRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFD 174 (576)
T ss_pred cCccCHHH-HHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHhhhhhh
Confidence 112222 233444433 3347889998653 334445444433233455554 55445554322 2245788
Q ss_pred cCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCc-hHHHHH
Q 037229 151 MECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLP-LVLVTT 199 (577)
Q Consensus 151 l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~ 199 (577)
+..++.++....+...+-..... --.+....+++.++|-. .|+..+
T Consensus 175 f~~l~~~~i~~~L~~i~~~egi~---i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 175 FRRIPLQKIVDRLRYIADQEGIS---ISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred cCCCCHHHHHHHHHHHHHHhCCC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 88999888877776655332211 11345667888888854 444444
No 167
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=77.49 E-value=1.5 Score=25.18 Aligned_cols=17 Identities=29% Similarity=0.643 Sum_probs=12.7
Q ss_pred CCCcceEeeecCCCCCc
Q 037229 545 LKNLKGITVSSCPNLKR 561 (577)
Q Consensus 545 ~~~L~~L~i~~c~~L~~ 561 (577)
+|+|++|++++|+++..
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 47788888888887653
No 168
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.21 E-value=19 Score=38.70 Aligned_cols=164 Identities=10% Similarity=0.039 Sum_probs=92.3
Q ss_pred CCccccHHHHHHHHHHhhcCCCceEEEEEeccch----hHHHHHHHhCCCcc---------------------h---h--
Q 037229 32 DLTVGLESTFDQVWSCLVEEEQVGIIGLYGMEGW----IQEQIRRKLGLVDD---------------------L---W-- 81 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~~~~~vv~I~G~gGw----~~~~i~~~l~~~~~---------------------~---~-- 81 (577)
+++||-+..++.+.+++..+.-...+-++|..|- +.+.+++.+..... . .
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~ 95 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDA 95 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeec
Confidence 5789999999999999988433345678899982 33344444422100 0 0
Q ss_pred -ccCCHHHHHHHHHHhcc------ccEEEEEecCCCh--hhhcccCCCCCCCCCCcEEEEEeCc-hhhhhcC-CCCceEe
Q 037229 82 -ARKGLEEKAMNIFGILS------KEFVLCWMMCGSE--LILTQMGVPVPNPKRMSKVLFTTRF-VEVYGHK-EADEMFR 150 (577)
Q Consensus 82 -~~~~~~~~~~~l~~~L~------kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~-~~v~~~~-~~~~~~~ 150 (577)
.....+++. .+.+... ++-++|+|++... ...+.+...+........+|.+|.+ ..+.... .-...++
T Consensus 96 ~~~~~vd~ir-~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SRc~~~~ 174 (527)
T PRK14969 96 ASNTQVDAMR-ELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFN 174 (527)
T ss_pred cccCCHHHHH-HHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHHHHHHh
Confidence 012223322 3333232 4558999999754 2345554444333345666665544 3332111 1135788
Q ss_pred cCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCch-HHHHH
Q 037229 151 MECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLPL-VLVTT 199 (577)
Q Consensus 151 l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~ 199 (577)
+..++.++..+.+.+.+..... .--.+....|++.++|.+- |+..+
T Consensus 175 f~~l~~~~i~~~L~~il~~egi---~~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 175 LKQMPPPLIVSHLQHILEQENI---PFDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred cCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 9999999888777765533221 1123455778888999664 44433
No 169
>COG3903 Predicted ATPase [General function prediction only]
Probab=76.89 E-value=1.5 Score=44.17 Aligned_cols=114 Identities=16% Similarity=0.103 Sum_probs=73.5
Q ss_pred HHHHHHHhcc-ccEEEEEecCCCh-hhhcccCCCCCCCCCCcEEEEEeCchhhhhcCCCCceEecCCCCHH-HHHHHHHH
Q 037229 89 KAMNIFGILS-KEFVLCWMMCGSE-LILTQMGVPVPNPKRMSKVLFTTRFVEVYGHKEADEMFRMECLRHE-EAWKLFQM 165 (577)
Q Consensus 89 ~~~~l~~~L~-kr~LlVLDdv~~~-~~~~~l~~~~~~~~~gsrIivTTR~~~v~~~~~~~~~~~l~~L~~~-~~~~Lf~~ 165 (577)
....+..++. +|.++|+||.-+. ++-..+...+..+...-+|+.|+|.... +..+..+.+..|+.. ++-++|..
T Consensus 77 ~~~~~~~~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ 153 (414)
T COG3903 77 AVDTLVRRIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVC 153 (414)
T ss_pred HHHHHHHHHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHH
Confidence 4445666677 9999999998654 2222222223233334568888886543 244566777777754 78899887
Q ss_pred hhCCCC--CCCCCChhHHHHHHHHHcCCCchHHHHHHHHHhc
Q 037229 166 KVGKET--MDDHSDIPKLVEIVTKECGGLPLVLVTTARAMAY 205 (577)
Q Consensus 166 ~a~~~~--~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~~ 205 (577)
.+.... ......-......|.+...|.|++|...++..+.
T Consensus 154 ra~~~~~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~s 195 (414)
T COG3903 154 RAVLVALSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRS 195 (414)
T ss_pred HHHHhccceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHh
Confidence 763221 1122334567788999999999999988877765
No 170
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=76.35 E-value=31 Score=35.59 Aligned_cols=123 Identities=11% Similarity=-0.072 Sum_probs=77.0
Q ss_pred HHHHHHHHHhhcCCCceEEEEEeccc----hhHHHHHHHhCCC---cc-hhccCCHHHHHHHHHHhcc----ccEEEEEe
Q 037229 39 STFDQVWSCLVEEEQVGIIGLYGMEG----WIQEQIRRKLGLV---DD-LWARKGLEEKAMNIFGILS----KEFVLCWM 106 (577)
Q Consensus 39 ~~~~~i~~~L~~~~~~~vv~I~G~gG----w~~~~i~~~l~~~---~~-~~~~~~~~~~~~~l~~~L~----kr~LlVLD 106 (577)
.-..++.+.+..... ++.|.|+-+ ++.+.+..++... -. .....+...+.+.++.... ++.+++||
T Consensus 24 ~~~~~l~~~~~~~~~--i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l~d~~~~~~~~~~~~~~yifLD 101 (398)
T COG1373 24 KLLPRLIKKLDLRPF--IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIELLDLLRAYIELKEREKSYIFLD 101 (398)
T ss_pred hhhHHHHhhcccCCc--EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhHHHHHHHHHHhhccCCceEEEe
Confidence 334444444443222 899999986 4555555555332 00 0022333344444555544 45799999
Q ss_pred cCCChhhhcccCCCCCCCCCCcEEEEEeCchhhhhc------CCCCceEecCCCCHHHHHHHHH
Q 037229 107 MCGSELILTQMGVPVPNPKRMSKVLFTTRFVEVYGH------KEADEMFRMECLRHEEAWKLFQ 164 (577)
Q Consensus 107 dv~~~~~~~~l~~~~~~~~~gsrIivTTR~~~v~~~------~~~~~~~~l~~L~~~~~~~Lf~ 164 (577)
.|-....|+.....+.+.++. +|++|+-+..+... .+-...+++-||+..|-..+-.
T Consensus 102 EIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~ 164 (398)
T COG1373 102 EIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKG 164 (398)
T ss_pred cccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhcc
Confidence 999999999887777776666 89999887776322 1234578999999888776543
No 171
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=76.24 E-value=59 Score=34.46 Aligned_cols=161 Identities=12% Similarity=0.045 Sum_probs=92.7
Q ss_pred CCCccccHHHHHHHHHHhhcCCCceEEEEEeccch----hHHHHHHHhC----CC-----------------c-c--hh-
Q 037229 31 SDLTVGLESTFDQVWSCLVEEEQVGIIGLYGMEGW----IQEQIRRKLG----LV-----------------D-D--LW- 81 (577)
Q Consensus 31 ~~~~vGr~~~~~~i~~~L~~~~~~~vv~I~G~gGw----~~~~i~~~l~----~~-----------------~-~--~~- 81 (577)
.+++||-+..++.+.+.+..+.-..-+-++|..|- +.+-++..+. .. . + ..
T Consensus 12 f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eid 91 (491)
T PRK14964 12 FKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEID 91 (491)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEe
Confidence 36799999999988888877433346778899982 2222222221 00 0 0 00
Q ss_pred --ccCCHHHHHHHHHHhcc------ccEEEEEecCCCh--hhhcccCCCCCCCCCCcEEEEEe-CchhhhhcC-CCCceE
Q 037229 82 --ARKGLEEKAMNIFGILS------KEFVLCWMMCGSE--LILTQMGVPVPNPKRMSKVLFTT-RFVEVYGHK-EADEMF 149 (577)
Q Consensus 82 --~~~~~~~~~~~l~~~L~------kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTT-R~~~v~~~~-~~~~~~ 149 (577)
+....+++. .+.+... ++-++|+|++... ...+.+...+.......++|++| ....+.... .-...+
T Consensus 92 aas~~~vddIR-~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc~~~ 170 (491)
T PRK14964 92 AASNTSVDDIK-VILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQRF 170 (491)
T ss_pred cccCCCHHHHH-HHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhheee
Confidence 122333332 2333222 4458999998653 33555544444334456666555 444453322 224678
Q ss_pred ecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCchH
Q 037229 150 RMECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLPLV 195 (577)
Q Consensus 150 ~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLa 195 (577)
++.+++.++..+.+.+.+..... .--++....|++.++|-+-.
T Consensus 171 ~f~~l~~~el~~~L~~ia~~Egi---~i~~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 171 DLQKIPTDKLVEHLVDIAKKENI---EHDEESLKLIAENSSGSMRN 213 (491)
T ss_pred ecccccHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHH
Confidence 99999999998888887754331 11234566788899887643
No 172
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=76.23 E-value=17 Score=39.38 Aligned_cols=135 Identities=10% Similarity=0.043 Sum_probs=74.3
Q ss_pred eEEEEEeccc----hhHHHHHHHhCCC--cchhccCCHHHHHHHHHHhcc--------cc----EEEEEecCCCh---hh
Q 037229 55 GIIGLYGMEG----WIQEQIRRKLGLV--DDLWARKGLEEKAMNIFGILS--------KE----FVLCWMMCGSE---LI 113 (577)
Q Consensus 55 ~vv~I~G~gG----w~~~~i~~~l~~~--~~~~~~~~~~~~~~~l~~~L~--------kr----~LlVLDdv~~~---~~ 113 (577)
..+.|+|..| .+...|...+... ....-..+.++....+...+. ++ =+|||||+... ..
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~gke~ 394 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDKES 394 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccCCHH
Confidence 3478999888 4777777665321 111122233333322222221 11 27999999653 22
Q ss_pred h-cccCCCCCC-CCCCcEEEEEeCch---------hhhhcCCCCceEecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHH
Q 037229 114 L-TQMGVPVPN-PKRMSKVLFTTRFV---------EVYGHKEADEMFRMECLRHEEAWKLFQMKVGKETMDDHSDIPKLV 182 (577)
Q Consensus 114 ~-~~l~~~~~~-~~~gsrIivTTR~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~ 182 (577)
| +.+...|.. ...|..||+||+.. .+...+...-+++++..+.+.-.+++.+++.......+ +++.
T Consensus 395 tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~---~eVi 471 (617)
T PRK14086 395 TQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAP---PEVL 471 (617)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCC---HHHH
Confidence 2 222222211 12356688888752 23344445678999999999999999988854432222 3555
Q ss_pred HHHHHHcCCC
Q 037229 183 EIVTKECGGL 192 (577)
Q Consensus 183 ~~i~~~c~gl 192 (577)
.-|++.+.+.
T Consensus 472 ~yLa~r~~rn 481 (617)
T PRK14086 472 EFIASRISRN 481 (617)
T ss_pred HHHHHhccCC
Confidence 6666665544
No 173
>CHL00181 cbbX CbbX; Provisional
Probab=76.19 E-value=42 Score=32.85 Aligned_cols=138 Identities=11% Similarity=0.021 Sum_probs=74.3
Q ss_pred CCccccHHHHHHHHHHhhc---C-----------CCceEEEEEeccc----hhHHHHHHH---hCCCc-chhccCCHHHH
Q 037229 32 DLTVGLESTFDQVWSCLVE---E-----------EQVGIIGLYGMEG----WIQEQIRRK---LGLVD-DLWARKGLEEK 89 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~---~-----------~~~~vv~I~G~gG----w~~~~i~~~---l~~~~-~~~~~~~~~~~ 89 (577)
.+++|.+..+++|.++... . ..-..+-++|..| .+.+.++.. .+... ...-..+..++
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l 102 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDL 102 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHH
Confidence 3689998888877665321 0 1122467899999 233333332 22211 00111111122
Q ss_pred H--------HHHHHhcc--ccEEEEEecCCCh-----------hhhcccCCCCCCCCCCcEEEEEeCchhhhhcC-----
Q 037229 90 A--------MNIFGILS--KEFVLCWMMCGSE-----------LILTQMGVPVPNPKRMSKVLFTTRFVEVYGHK----- 143 (577)
Q Consensus 90 ~--------~~l~~~L~--kr~LlVLDdv~~~-----------~~~~~l~~~~~~~~~gsrIivTTR~~~v~~~~----- 143 (577)
. ....+.+. ..-.|++|++... +..+.+...+.+...+.+||.++....+....
T Consensus 103 ~~~~~g~~~~~~~~~l~~a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~ 182 (287)
T CHL00181 103 VGQYIGHTAPKTKEVLKKAMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPG 182 (287)
T ss_pred HHHHhccchHHHHHHHHHccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHH
Confidence 1 12334444 4568999999541 22333434444444456777777654442211
Q ss_pred ---CCCceEecCCCCHHHHHHHHHHhhCC
Q 037229 144 ---EADEMFRMECLRHEEAWKLFQMKVGK 169 (577)
Q Consensus 144 ---~~~~~~~l~~L~~~~~~~Lf~~~a~~ 169 (577)
.....+.+++++.++..+++.+.+-.
T Consensus 183 L~sR~~~~i~F~~~t~~el~~I~~~~l~~ 211 (287)
T CHL00181 183 LSSRIANHVDFPDYTPEELLQIAKIMLEE 211 (287)
T ss_pred HHHhCCceEEcCCcCHHHHHHHHHHHHHH
Confidence 12457889999999998888887744
No 174
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=75.09 E-value=23 Score=40.48 Aligned_cols=134 Identities=13% Similarity=0.094 Sum_probs=73.7
Q ss_pred CCCccccHHHHHHHHHHhhcCCCceEEEEEeccch----hHHHHHHHhCCC-------cc--------hh--ccCCHHHH
Q 037229 31 SDLTVGLESTFDQVWSCLVEEEQVGIIGLYGMEGW----IQEQIRRKLGLV-------DD--------LW--ARKGLEEK 89 (577)
Q Consensus 31 ~~~~vGr~~~~~~i~~~L~~~~~~~vv~I~G~gGw----~~~~i~~~l~~~-------~~--------~~--~~~~~~~~ 89 (577)
.+++|||+.++.++++.|... ...-+-++|.+|- +.+.++..+... .. .. ......+.
T Consensus 186 ld~~iGr~~ei~~~i~~l~r~-~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~ 264 (852)
T TIGR03345 186 IDPVLGRDDEIRQMIDILLRR-RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEF 264 (852)
T ss_pred CCcccCCHHHHHHHHHHHhcC-CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHH
Confidence 367899999999999998874 2233448899983 444444444210 00 00 00112222
Q ss_pred HHHHHHhcc------ccEEEEEecCCChh-------hhc--ccCCCCCCCCCC-cEEEEEeCchhhhhcC-------CCC
Q 037229 90 AMNIFGILS------KEFVLCWMMCGSEL-------ILT--QMGVPVPNPKRM-SKVLFTTRFVEVYGHK-------EAD 146 (577)
Q Consensus 90 ~~~l~~~L~------kr~LlVLDdv~~~~-------~~~--~l~~~~~~~~~g-srIivTTR~~~v~~~~-------~~~ 146 (577)
.+.+++.+. ++.+|++|++-... +-+ .+..+. -.+| -++|-||...+..... .-.
T Consensus 265 e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~--l~~G~l~~IgaTT~~e~~~~~~~d~AL~rRf 342 (852)
T TIGR03345 265 ENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPA--LARGELRTIAATTWAEYKKYFEKDPALTRRF 342 (852)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHH--hhCCCeEEEEecCHHHHhhhhhccHHHHHhC
Confidence 233333332 47899999985421 111 122222 1233 4566666554332111 123
Q ss_pred ceEecCCCCHHHHHHHHHHhh
Q 037229 147 EMFRMECLRHEEAWKLFQMKV 167 (577)
Q Consensus 147 ~~~~l~~L~~~~~~~Lf~~~a 167 (577)
..+.+++++.++..+++....
T Consensus 343 ~~i~v~eps~~~~~~iL~~~~ 363 (852)
T TIGR03345 343 QVVKVEEPDEETAIRMLRGLA 363 (852)
T ss_pred eEEEeCCCCHHHHHHHHHHHH
Confidence 589999999999999975443
No 175
>CHL00176 ftsH cell division protein; Validated
Probab=74.09 E-value=49 Score=36.46 Aligned_cols=158 Identities=10% Similarity=0.052 Sum_probs=87.4
Q ss_pred CCccccHHHHHHHHHHhh---cC--------CCceEEEEEeccc----hhHHHHHHHhCCCcchhcc---------CCHH
Q 037229 32 DLTVGLESTFDQVWSCLV---EE--------EQVGIIGLYGMEG----WIQEQIRRKLGLVDDLWAR---------KGLE 87 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~---~~--------~~~~vv~I~G~gG----w~~~~i~~~l~~~~~~~~~---------~~~~ 87 (577)
++++|.++.++++.+.+. .. ...+-|-++|..| .+.+.++...+.+--.... ....
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~ 262 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAA 262 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHH
Confidence 678999888877766542 21 1234588999999 3666777666543210000 0111
Q ss_pred HHHHHHHHhcc-ccEEEEEecCCCh------------hh----hcccCCCCCC--CCCCcEEEEEeCchhhhhc--C---
Q 037229 88 EKAMNIFGILS-KEFVLCWMMCGSE------------LI----LTQMGVPVPN--PKRMSKVLFTTRFVEVYGH--K--- 143 (577)
Q Consensus 88 ~~~~~l~~~L~-kr~LlVLDdv~~~------------~~----~~~l~~~~~~--~~~gsrIivTTR~~~v~~~--~--- 143 (577)
.+...+.+... ..++|++||++.. .. +..+...+.. ...+-.||.||...+.... .
T Consensus 263 ~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpG 342 (638)
T CHL00176 263 RVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPG 342 (638)
T ss_pred HHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccc
Confidence 22222333333 7789999999532 11 2223222221 2335567777766544221 1
Q ss_pred CCCceEecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCc
Q 037229 144 EADEMFRMECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLP 193 (577)
Q Consensus 144 ~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP 193 (577)
.-+..+.+...+.++-.+++..++-.... ........+++.+.|+.
T Consensus 343 RFd~~I~v~lPd~~~R~~IL~~~l~~~~~----~~d~~l~~lA~~t~G~s 388 (638)
T CHL00176 343 RFDRQITVSLPDREGRLDILKVHARNKKL----SPDVSLELIARRTPGFS 388 (638)
T ss_pred cCceEEEECCCCHHHHHHHHHHHHhhccc----chhHHHHHHHhcCCCCC
Confidence 22467788888888888888887754221 11223456777777743
No 176
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=73.95 E-value=4 Score=36.65 Aligned_cols=32 Identities=22% Similarity=0.219 Sum_probs=19.5
Q ss_pred CccccHHHHHHHHHHhh--cCCCceEEEEEeccc
Q 037229 33 LTVGLESTFDQVWSCLV--EEEQVGIIGLYGMEG 64 (577)
Q Consensus 33 ~~vGr~~~~~~i~~~L~--~~~~~~vv~I~G~gG 64 (577)
.+|||+++.+++...|. .....+.+.|+|..|
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G 34 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESG 34 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TT
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence 47999999999999994 226678999999999
No 177
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=73.81 E-value=20 Score=37.61 Aligned_cols=100 Identities=6% Similarity=-0.018 Sum_probs=62.3
Q ss_pred cEEEEEecCCCh---hhh-cccCCCCCC-CCCCcEEEEEeCch---------hhhhcCCCCceEecCCCCHHHHHHHHHH
Q 037229 100 EFVLCWMMCGSE---LIL-TQMGVPVPN-PKRMSKVLFTTRFV---------EVYGHKEADEMFRMECLRHEEAWKLFQM 165 (577)
Q Consensus 100 r~LlVLDdv~~~---~~~-~~l~~~~~~-~~~gsrIivTTR~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf~~ 165 (577)
.-+||+||+... ..+ +.+..-+.. ...|..||+|+... .+...+...-.+.+++++.++-.+++.+
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHH
Confidence 348999999543 122 333333321 13355788886532 2333344456788999999999999999
Q ss_pred hhCCCCCCCCCChhHHHHHHHHHcCCCchHHHHHH
Q 037229 166 KVGKETMDDHSDIPKLVEIVTKECGGLPLVLVTTA 200 (577)
Q Consensus 166 ~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g 200 (577)
++-..... ..--++...-|+..+.|.|-.+..+.
T Consensus 287 ~~~~~gl~-~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 287 EIKNQNIK-QEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HHHhcCCC-CCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 88543211 12235778889999999887665443
No 178
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=71.97 E-value=50 Score=32.82 Aligned_cols=159 Identities=11% Similarity=0.008 Sum_probs=91.3
Q ss_pred CCccccHHHHHHHHHHhhcCCCceEEEEEeccch----hHHHHHHHhCCCc---------------chh---c-------
Q 037229 32 DLTVGLESTFDQVWSCLVEEEQVGIIGLYGMEGW----IQEQIRRKLGLVD---------------DLW---A------- 82 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~~~~~vv~I~G~gGw----~~~~i~~~l~~~~---------------~~~---~------- 82 (577)
++++|-+..++.+.+.+..+.-....-++|..|. +...+++.+.... ++. .
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g 83 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQG 83 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccc
Confidence 5789999999999999988433467888999983 2233333332110 000 0
Q ss_pred -------------------cCCHHHHHHHHHHhcc------ccEEEEEecCCCh--hhhcccCCCCCCCCCCcEEEEEeC
Q 037229 83 -------------------RKGLEEKAMNIFGILS------KEFVLCWMMCGSE--LILTQMGVPVPNPKRMSKVLFTTR 135 (577)
Q Consensus 83 -------------------~~~~~~~~~~l~~~L~------kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR 135 (577)
....+ -++.+.+.+. ++-++|+|++... ...+.+...+-.-.+..=|++|+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~I~id-~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~~~ 162 (314)
T PRK07399 84 KLITASEAEEAGLKRKAPPQIRLE-QIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIAPS 162 (314)
T ss_pred cccchhhhhhccccccccccCcHH-HHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEECC
Confidence 00011 2344555554 3558899998653 334444333322222333444544
Q ss_pred chhhhhcCC-CCceEecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCchHHH
Q 037229 136 FVEVYGHKE-ADEMFRMECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLPLVLV 197 (577)
Q Consensus 136 ~~~v~~~~~-~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 197 (577)
-..+..... -...+++.+++.++..+.+........ .......++..++|-|....
T Consensus 163 ~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~------~~~~~~~l~~~a~Gs~~~al 219 (314)
T PRK07399 163 PESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI------LNINFPELLALAQGSPGAAI 219 (314)
T ss_pred hHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc------chhHHHHHHHHcCCCHHHHH
Confidence 444443332 256899999999999999987643211 11113577889999996553
No 179
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=71.86 E-value=2.7 Score=24.23 Aligned_cols=17 Identities=35% Similarity=0.659 Sum_probs=10.6
Q ss_pred CCCEEeccCCCCCcccc
Q 037229 347 SLQHLDLSSSGILELPK 363 (577)
Q Consensus 347 ~L~~L~L~~~~i~~lp~ 363 (577)
+|++|++++|+++.+|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 45666666666666664
No 180
>PRK06620 hypothetical protein; Validated
Probab=71.39 E-value=9.6 Score=35.47 Aligned_cols=148 Identities=7% Similarity=-0.115 Sum_probs=78.4
Q ss_pred Ccccc--HHHHHHHHHHhhc-CCCc--eEEEEEeccch----hHHHHHHHhCCCcchhccCCHHHHHHHHHHhccccEEE
Q 037229 33 LTVGL--ESTFDQVWSCLVE-EEQV--GIIGLYGMEGW----IQEQIRRKLGLVDDLWARKGLEEKAMNIFGILSKEFVL 103 (577)
Q Consensus 33 ~~vGr--~~~~~~i~~~L~~-~~~~--~vv~I~G~gGw----~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~kr~Ll 103 (577)
-+||- +.....+.++-.. +.+. ..+-|+|..|- +.+.+....+..- .+.... ..+..+..-++
T Consensus 18 Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~-----~~~~~~---~~~~~~~~d~l 89 (214)
T PRK06620 18 FIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYI-----IKDIFF---NEEILEKYNAF 89 (214)
T ss_pred hEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccCCEE-----cchhhh---chhHHhcCCEE
Confidence 34665 3344555554432 1122 56899999992 4444444332110 111100 11222334578
Q ss_pred EEecCCChh--hhcccCCCCCCCCCCcEEEEEeCchhh-------hhcCCCCceEecCCCCHHHHHHHHHHhhCCCCCCC
Q 037229 104 CWMMCGSEL--ILTQMGVPVPNPKRMSKVLFTTRFVEV-------YGHKEADEMFRMECLRHEEAWKLFQMKVGKETMDD 174 (577)
Q Consensus 104 VLDdv~~~~--~~~~l~~~~~~~~~gsrIivTTR~~~v-------~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~ 174 (577)
++|||.... .+-.+...+. ..|..||+|++...- ...+...-+++++++++++-..+..+.+......
T Consensus 90 liDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~- 166 (214)
T PRK06620 90 IIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVT- 166 (214)
T ss_pred EEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCC-
Confidence 889995322 1212211221 346789999874332 3333445589999999999888888776432211
Q ss_pred CCChhHHHHHHHHHcCCCc
Q 037229 175 HSDIPKLVEIVTKECGGLP 193 (577)
Q Consensus 175 ~~~~~~~~~~i~~~c~glP 193 (577)
--+++..-|++.+.|--
T Consensus 167 --l~~ev~~~L~~~~~~d~ 183 (214)
T PRK06620 167 --ISRQIIDFLLVNLPREY 183 (214)
T ss_pred --CCHHHHHHHHHHccCCH
Confidence 12466667777776643
No 181
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=70.70 E-value=23 Score=37.11 Aligned_cols=89 Identities=6% Similarity=-0.061 Sum_probs=49.5
Q ss_pred cEEEEEecCCChhh----hcccCCCCCC-CCCCcEEEEEeCch---------hhhhcCCCCceEecCCCCHHHHHHHHHH
Q 037229 100 EFVLCWMMCGSELI----LTQMGVPVPN-PKRMSKVLFTTRFV---------EVYGHKEADEMFRMECLRHEEAWKLFQM 165 (577)
Q Consensus 100 r~LlVLDdv~~~~~----~~~l~~~~~~-~~~gsrIivTTR~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf~~ 165 (577)
.-+|++||+..... .+.+...+.. ...|..||+||... .+...+.....+.+++++.++-..++.+
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~ 282 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLER 282 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHH
Confidence 34888999854311 1222222210 12355788888542 2233334456889999999999999988
Q ss_pred hhCCCCCCCCCChhHHHHHHHHHcCC
Q 037229 166 KVGKETMDDHSDIPKLVEIVTKECGG 191 (577)
Q Consensus 166 ~a~~~~~~~~~~~~~~~~~i~~~c~g 191 (577)
++-......+ +++..-++..+.+
T Consensus 283 k~~~~~~~l~---~evl~~la~~~~~ 305 (445)
T PRK12422 283 KAEALSIRIE---ETALDFLIEALSS 305 (445)
T ss_pred HHHHcCCCCC---HHHHHHHHHhcCC
Confidence 8744331111 3444445555543
No 182
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=69.63 E-value=14 Score=30.83 Aligned_cols=98 Identities=15% Similarity=0.108 Sum_probs=59.2
Q ss_pred cccHHHHHHHHHHhhcC----CCceEEEEEeccch----hHHHHHHHhCCCcchhccCCHHHHHHHHHHhcc--ccEEEE
Q 037229 35 VGLESTFDQVWSCLVEE----EQVGIIGLYGMEGW----IQEQIRRKLGLVDDLWARKGLEEKAMNIFGILS--KEFVLC 104 (577)
Q Consensus 35 vGr~~~~~~i~~~L~~~----~~~~vv~I~G~gGw----~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~--kr~LlV 104 (577)
+|--.-++.+.+.+... .+..++.+.-..++ +.+.|+++++.... ...+.+.+.+.+.+.+. +..+||
T Consensus 15 ~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~--~~~~~~~l~~~~~~~l~~~~~~~lv 92 (131)
T PF13401_consen 15 SGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLK--SRQTSDELRSLLIDALDRRRVVLLV 92 (131)
T ss_dssp SSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSS--STS-HHHHHHHHHHHHHHCTEEEEE
T ss_pred CCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCcccc--ccCCHHHHHHHHHHHHHhcCCeEEE
Confidence 34444555555554431 24566655544442 88888888887653 24577888899999998 455999
Q ss_pred EecCCCh---hhhcccCCCCCCCCCCcEEEEEeCc
Q 037229 105 WMMCGSE---LILTQMGVPVPNPKRMSKVLFTTRF 136 (577)
Q Consensus 105 LDdv~~~---~~~~~l~~~~~~~~~gsrIivTTR~ 136 (577)
+|++... ..++.+..... ..+.+||+..+.
T Consensus 93 iDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 93 IDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp EETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred EeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 9999654 22444433222 556667776654
No 183
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=69.47 E-value=51 Score=34.11 Aligned_cols=91 Identities=11% Similarity=-0.005 Sum_probs=53.3
Q ss_pred EEEEecCCChh---hh-cccCCCCCC-CCCCcEEEEEeCch-h--------hhhcCCCCceEecCCCCHHHHHHHHHHhh
Q 037229 102 VLCWMMCGSEL---IL-TQMGVPVPN-PKRMSKVLFTTRFV-E--------VYGHKEADEMFRMECLRHEEAWKLFQMKV 167 (577)
Q Consensus 102 LlVLDdv~~~~---~~-~~l~~~~~~-~~~gsrIivTTR~~-~--------v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a 167 (577)
+|||||+.... .+ +.+...+.. ...|..||+||... . +...+.....+++++.+.++-.+++.+.+
T Consensus 202 lLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~ 281 (405)
T TIGR00362 202 LLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKA 281 (405)
T ss_pred EEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHH
Confidence 88999996431 11 222222211 12355688877631 1 22223334578999999999999999887
Q ss_pred CCCCCCCCCChhHHHHHHHHHcCCCchH
Q 037229 168 GKETMDDHSDIPKLVEIVTKECGGLPLV 195 (577)
Q Consensus 168 ~~~~~~~~~~~~~~~~~i~~~c~glPLa 195 (577)
-...... -+++...|++.+.|-.-.
T Consensus 282 ~~~~~~l---~~e~l~~ia~~~~~~~r~ 306 (405)
T TIGR00362 282 EEEGLEL---PDEVLEFIAKNIRSNVRE 306 (405)
T ss_pred HHcCCCC---CHHHHHHHHHhcCCCHHH
Confidence 5433112 246677777777775543
No 184
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=69.25 E-value=1e+02 Score=33.99 Aligned_cols=163 Identities=13% Similarity=0.104 Sum_probs=90.8
Q ss_pred CCCccccHHHHHHHHHHhhcCCCceEEEEEeccch----hHHHHHHHhCCCc------------------------c--h
Q 037229 31 SDLTVGLESTFDQVWSCLVEEEQVGIIGLYGMEGW----IQEQIRRKLGLVD------------------------D--L 80 (577)
Q Consensus 31 ~~~~vGr~~~~~~i~~~L~~~~~~~vv~I~G~gGw----~~~~i~~~l~~~~------------------------~--~ 80 (577)
.++++|.+..++.+..++..+.-..-+-++|..|- +.+.+++.+.... + .
T Consensus 15 f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~e 94 (620)
T PRK14948 15 FDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDVIE 94 (620)
T ss_pred HhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccEEE
Confidence 36789999999999999988432345668898881 3333444432210 0 0
Q ss_pred h---ccCCHHHHHHHHHHhcc------ccEEEEEecCCCh--hhhcccCCCCCCCCCCcEEEEEeCc-hhhhhcC-CCCc
Q 037229 81 W---ARKGLEEKAMNIFGILS------KEFVLCWMMCGSE--LILTQMGVPVPNPKRMSKVLFTTRF-VEVYGHK-EADE 147 (577)
Q Consensus 81 ~---~~~~~~~~~~~l~~~L~------kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~-~~v~~~~-~~~~ 147 (577)
. .....+.+. .+.+.+. ++-++|+|++... ..++.|...+........+|.+|.+ ..+.... .-..
T Consensus 95 i~~~~~~~vd~IR-eii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrSRc~ 173 (620)
T PRK14948 95 IDAASNTGVDNIR-ELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISRCQ 173 (620)
T ss_pred EeccccCCHHHHH-HHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHhhee
Confidence 0 112222222 2222222 3448899999754 4456665554433334555555543 3333222 2235
Q ss_pred eEecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCchHHH
Q 037229 148 MFRMECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLPLVLV 197 (577)
Q Consensus 148 ~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 197 (577)
.+++..++.++....+.+.+....... -.+....+++.++|-+..+.
T Consensus 174 ~~~f~~l~~~ei~~~L~~ia~kegi~i---s~~al~~La~~s~G~lr~A~ 220 (620)
T PRK14948 174 RFDFRRIPLEAMVQHLSEIAEKESIEI---EPEALTLVAQRSQGGLRDAE 220 (620)
T ss_pred EEEecCCCHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHcCCCHHHHH
Confidence 678889998888777776554322111 12557788888988765443
No 185
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=68.10 E-value=50 Score=36.23 Aligned_cols=34 Identities=15% Similarity=0.132 Sum_probs=28.0
Q ss_pred CCCccccHHHHHHHHHHhhcC----CCceEEEEEeccc
Q 037229 31 SDLTVGLESTFDQVWSCLVEE----EQVGIIGLYGMEG 64 (577)
Q Consensus 31 ~~~~vGr~~~~~~i~~~L~~~----~~~~vv~I~G~gG 64 (577)
.++++|-+..++++..|+... ....++.|+|..|
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~G 120 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSG 120 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCC
Confidence 467899999999999998764 3346799999999
No 186
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=66.26 E-value=15 Score=41.22 Aligned_cols=133 Identities=15% Similarity=0.113 Sum_probs=72.3
Q ss_pred CCccccHHHHHHHHHHhhcCCCceEEEEEeccc----hhHHHHHHHhCCCc--------chh------------ccCCHH
Q 037229 32 DLTVGLESTFDQVWSCLVEEEQVGIIGLYGMEG----WIQEQIRRKLGLVD--------DLW------------ARKGLE 87 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~~~~~vv~I~G~gG----w~~~~i~~~l~~~~--------~~~------------~~~~~~ 87 (577)
+.++||+++++++++.|...... -+-++|..| -+.+.+...+.... ..+ ...+.+
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~~-n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e 264 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRKN-NPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFE 264 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCCC-CeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHH
Confidence 57899999999999998885222 234789988 24444443321000 000 011222
Q ss_pred HHHHHHHHhcc--ccEEEEEecCCCh----------hhhcccCCCCCCCCCC-cEEEEEeCchhhhhcC-------CCCc
Q 037229 88 EKAMNIFGILS--KEFVLCWMMCGSE----------LILTQMGVPVPNPKRM-SKVLFTTRFVEVYGHK-------EADE 147 (577)
Q Consensus 88 ~~~~~l~~~L~--kr~LlVLDdv~~~----------~~~~~l~~~~~~~~~g-srIivTTR~~~v~~~~-------~~~~ 147 (577)
...+.+.+.+. +..+|++|++... .+...+..++. .+| -++|-+|......... .--.
T Consensus 265 ~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L--~~g~i~vIgATt~~E~~~~~~~D~AL~rRFq 342 (758)
T PRK11034 265 KRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL--SSGKIRVIGSTTYQEFSNIFEKDRALARRFQ 342 (758)
T ss_pred HHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHH--hCCCeEEEecCChHHHHHHhhccHHHHhhCc
Confidence 33334444454 6789999999532 11111222222 223 3445455443321111 1124
Q ss_pred eEecCCCCHHHHHHHHHHhh
Q 037229 148 MFRMECLRHEEAWKLFQMKV 167 (577)
Q Consensus 148 ~~~l~~L~~~~~~~Lf~~~a 167 (577)
.+.++..+.++..+++....
T Consensus 343 ~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 343 KIDITEPSIEETVQIINGLK 362 (758)
T ss_pred EEEeCCCCHHHHHHHHHHHH
Confidence 78999999999999988653
No 187
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=65.40 E-value=49 Score=34.81 Aligned_cols=91 Identities=12% Similarity=-0.032 Sum_probs=54.1
Q ss_pred EEEEEecCCCh---hh-hcccCCCCCC-CCCCcEEEEEeCch---------hhhhcCCCCceEecCCCCHHHHHHHHHHh
Q 037229 101 FVLCWMMCGSE---LI-LTQMGVPVPN-PKRMSKVLFTTRFV---------EVYGHKEADEMFRMECLRHEEAWKLFQMK 166 (577)
Q Consensus 101 ~LlVLDdv~~~---~~-~~~l~~~~~~-~~~gsrIivTTR~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 166 (577)
-+||+||+... .. .+.+...+.. ...|..||+||... .+...+.....+++++.+.++-.+++.+.
T Consensus 213 dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~ 292 (450)
T PRK00149 213 DVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKK 292 (450)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHH
Confidence 38999999642 11 1222222211 12345688887643 12333444568999999999999999998
Q ss_pred hCCCCCCCCCChhHHHHHHHHHcCCCch
Q 037229 167 VGKETMDDHSDIPKLVEIVTKECGGLPL 194 (577)
Q Consensus 167 a~~~~~~~~~~~~~~~~~i~~~c~glPL 194 (577)
+-..... --+++...|++.+.|-.-
T Consensus 293 ~~~~~~~---l~~e~l~~ia~~~~~~~R 317 (450)
T PRK00149 293 AEEEGID---LPDEVLEFIAKNITSNVR 317 (450)
T ss_pred HHHcCCC---CCHHHHHHHHcCcCCCHH
Confidence 8543211 224567777777777644
No 188
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=65.13 E-value=29 Score=32.59 Aligned_cols=108 Identities=11% Similarity=0.091 Sum_probs=63.8
Q ss_pred CCCCCccccHHHHHHHHH---HhhcC---CCceEEEEEeccch-hHHHHHHHhCCCcch---hccCCHHHHHHHHHHhcc
Q 037229 29 RPSDLTVGLESTFDQVWS---CLVEE---EQVGIIGLYGMEGW-IQEQIRRKLGLVDDL---WARKGLEEKAMNIFGILS 98 (577)
Q Consensus 29 ~~~~~~vGr~~~~~~i~~---~L~~~---~~~~vv~I~G~gGw-~~~~i~~~l~~~~~~---~~~~~~~~~~~~l~~~L~ 98 (577)
+....++|.|..++.+++ .+..+ +++-..|--|||-= +.+.++.++....-. .+..+...+. .|.+.|+
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~~Lp-~l~~~Lr 135 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLATLP-DLVELLR 135 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHhhHH-HHHHHHh
Confidence 334678999999999886 33444 55555555555542 777777776543321 1233333333 4555555
Q ss_pred ---ccEEEEEecCCCh---hhhcccCCCCCCC---CCCcEEEEEeCch
Q 037229 99 ---KEFVLCWMMCGSE---LILTQMGVPVPNP---KRMSKVLFTTRFV 137 (577)
Q Consensus 99 ---kr~LlVLDdv~~~---~~~~~l~~~~~~~---~~gsrIivTTR~~ 137 (577)
+||.|..||..-+ +....++..+..+ .+...++..|.++
T Consensus 136 ~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 136 ARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred cCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 8999999999643 4466676666432 2334555555543
No 189
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=65.12 E-value=44 Score=35.59 Aligned_cols=138 Identities=17% Similarity=0.099 Sum_probs=78.6
Q ss_pred CCccccHHHHHHHHHHhhcC------------CCceEEEEEeccch----hHHHHHHHhCCCc--------c--hhc---
Q 037229 32 DLTVGLESTFDQVWSCLVEE------------EQVGIIGLYGMEGW----IQEQIRRKLGLVD--------D--LWA--- 82 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~------------~~~~vv~I~G~gGw----~~~~i~~~l~~~~--------~--~~~--- 82 (577)
+++.|.+..+++|.+.+... ...+-+-++|+.|. +.+.++.++.... . ...
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~e 261 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPE 261 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchh
Confidence 66789999999998876431 23456889999994 7777777764320 0 000
Q ss_pred -----cCCHHHHHHHHHHhc----c--ccEEEEEecCCChh---------h-----hcccCCCCCC--CCCCcEEEEEeC
Q 037229 83 -----RKGLEEKAMNIFGIL----S--KEFVLCWMMCGSEL---------I-----LTQMGVPVPN--PKRMSKVLFTTR 135 (577)
Q Consensus 83 -----~~~~~~~~~~l~~~L----~--kr~LlVLDdv~~~~---------~-----~~~l~~~~~~--~~~gsrIivTTR 135 (577)
....+...+.+.+.. . ++++|++|+++... + ...+...+.. ...+..||.||-
T Consensus 262 Ll~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN 341 (512)
T TIGR03689 262 LLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASN 341 (512)
T ss_pred hcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccC
Confidence 001111222232222 2 47899999997421 1 1122222221 112344555665
Q ss_pred chhhhhc--C---CCCceEecCCCCHHHHHHHHHHhhCC
Q 037229 136 FVEVYGH--K---EADEMFRMECLRHEEAWKLFQMKVGK 169 (577)
Q Consensus 136 ~~~v~~~--~---~~~~~~~l~~L~~~~~~~Lf~~~a~~ 169 (577)
..+.... . .-+..+++...+.++..++|.++...
T Consensus 342 ~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 342 REDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred ChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 4443211 1 22456899999999999999988643
No 190
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=64.29 E-value=22 Score=40.85 Aligned_cols=132 Identities=14% Similarity=0.082 Sum_probs=71.4
Q ss_pred CCccccHHHHHHHHHHhhcCCCceEEEEEeccch----hHHHHHHHhCCC-------cc-hh------------ccCCHH
Q 037229 32 DLTVGLESTFDQVWSCLVEEEQVGIIGLYGMEGW----IQEQIRRKLGLV-------DD-LW------------ARKGLE 87 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~~~~~vv~I~G~gGw----~~~~i~~~l~~~-------~~-~~------------~~~~~~ 87 (577)
+++|||+.++.++++.|... .-.-+-++|..|- +.+.++..+... .. .. ...+.+
T Consensus 173 ~~~igr~~ei~~~~~~l~r~-~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e 251 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRR-TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFE 251 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcC-CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhHH
Confidence 56999999999999999874 2233347888882 445555544210 00 00 011122
Q ss_pred HHHHHHHHhcc---ccEEEEEecCCChh----------hhcccCCCCCCCCCC-cEEEEEeCchhhhhcC-------CCC
Q 037229 88 EKAMNIFGILS---KEFVLCWMMCGSEL----------ILTQMGVPVPNPKRM-SKVLFTTRFVEVYGHK-------EAD 146 (577)
Q Consensus 88 ~~~~~l~~~L~---kr~LlVLDdv~~~~----------~~~~l~~~~~~~~~g-srIivTTR~~~v~~~~-------~~~ 146 (577)
.....+.+.+. ++.+|++|++.... .-+.++ +.. .+| -++|-+|.....-..+ .-.
T Consensus 252 ~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk-~~l--~~g~i~~IgaTt~~e~r~~~~~d~al~rRf 328 (852)
T TIGR03346 252 ERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLK-PAL--ARGELHCIGATTLDEYRKYIEKDAALERRF 328 (852)
T ss_pred HHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhc-hhh--hcCceEEEEeCcHHHHHHHhhcCHHHHhcC
Confidence 22333333332 47899999985321 112222 222 223 3445455444331111 123
Q ss_pred ceEecCCCCHHHHHHHHHHhh
Q 037229 147 EMFRMECLRHEEAWKLFQMKV 167 (577)
Q Consensus 147 ~~~~l~~L~~~~~~~Lf~~~a 167 (577)
..+.+...+.++..+++....
T Consensus 329 ~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 329 QPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred CEEEeCCCCHHHHHHHHHHHH
Confidence 467888889999999887653
No 191
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=63.33 E-value=6.1 Score=22.80 Aligned_cols=15 Identities=40% Similarity=0.556 Sum_probs=8.6
Q ss_pred cCCCEEeccCCCCCc
Q 037229 346 VSLQHLDLSSSGILE 360 (577)
Q Consensus 346 ~~L~~L~L~~~~i~~ 360 (577)
.+|+.|++++|+|+.
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 456666666665543
No 192
>PRK10865 protein disaggregation chaperone; Provisional
Probab=61.67 E-value=27 Score=40.00 Aligned_cols=134 Identities=14% Similarity=0.033 Sum_probs=70.6
Q ss_pred CCCccccHHHHHHHHHHhhcCCCceEEEEEeccch----hHHHHHHHhCCC-------c-c-------h-h----ccCCH
Q 037229 31 SDLTVGLESTFDQVWSCLVEEEQVGIIGLYGMEGW----IQEQIRRKLGLV-------D-D-------L-W----ARKGL 86 (577)
Q Consensus 31 ~~~~vGr~~~~~~i~~~L~~~~~~~vv~I~G~gGw----~~~~i~~~l~~~-------~-~-------~-~----~~~~~ 86 (577)
.+++|||+.++.++++.|... ...-+-++|..|- +.+.++..+... . . . . .....
T Consensus 177 l~~vigr~~ei~~~i~iL~r~-~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~ 255 (857)
T PRK10865 177 LDPVIGRDEEIRRTIQVLQRR-TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEF 255 (857)
T ss_pred CCcCCCCHHHHHHHHHHHhcC-CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhh
Confidence 367999999999999999884 3333448899982 555555554210 0 0 0 0 01112
Q ss_pred HHHHHHHHHhcc---ccEEEEEecCCChh---------hhcccCCCCCCCCCC-cEEEEEeCchhhhhcC-------CCC
Q 037229 87 EEKAMNIFGILS---KEFVLCWMMCGSEL---------ILTQMGVPVPNPKRM-SKVLFTTRFVEVYGHK-------EAD 146 (577)
Q Consensus 87 ~~~~~~l~~~L~---kr~LlVLDdv~~~~---------~~~~l~~~~~~~~~g-srIivTTR~~~v~~~~-------~~~ 146 (577)
+...+.+.+.+. ++.+|++|++.... +-..+..+.. .+| -++|-||......... .-.
T Consensus 256 e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l--~~g~l~~IgaTt~~e~r~~~~~d~al~rRf 333 (857)
T PRK10865 256 EERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPAL--ARGELHCVGATTLDEYRQYIEKDAALERRF 333 (857)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchh--hcCCCeEEEcCCCHHHHHHhhhcHHHHhhC
Confidence 222333333332 57899999985431 1112222222 223 3455555544431111 112
Q ss_pred ceEecCCCCHHHHHHHHHHhh
Q 037229 147 EMFRMECLRHEEAWKLFQMKV 167 (577)
Q Consensus 147 ~~~~l~~L~~~~~~~Lf~~~a 167 (577)
..+.+..-+.++..+++....
T Consensus 334 ~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 334 QKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred CEEEeCCCCHHHHHHHHHHHh
Confidence 345566668888888876543
No 193
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=60.11 E-value=1.5e+02 Score=29.64 Aligned_cols=133 Identities=8% Similarity=-0.037 Sum_probs=75.4
Q ss_pred CCccc-cHHHHHHHHHHhhcCCCceEEEEEeccch----hHHHHHHHhCCCc---------------------chh----
Q 037229 32 DLTVG-LESTFDQVWSCLVEEEQVGIIGLYGMEGW----IQEQIRRKLGLVD---------------------DLW---- 81 (577)
Q Consensus 32 ~~~vG-r~~~~~~i~~~L~~~~~~~vv~I~G~gGw----~~~~i~~~l~~~~---------------------~~~---- 81 (577)
..++| -+..++.+.+.+..+.-....-++|..|. +.+.++..+.... ++.
T Consensus 5 ~~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~ 84 (329)
T PRK08058 5 EQLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVA 84 (329)
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEec
Confidence 45677 66677777777776444556788999993 3344444432211 000
Q ss_pred ---ccCCHHHHHHHHHHhcc------ccEEEEEecCCCh--hhhcccCCCCCCCCCCcEEEEEeCchh-hhhcCC-CCce
Q 037229 82 ---ARKGLEEKAMNIFGILS------KEFVLCWMMCGSE--LILTQMGVPVPNPKRMSKVLFTTRFVE-VYGHKE-ADEM 148 (577)
Q Consensus 82 ---~~~~~~~~~~~l~~~L~------kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~~~-v~~~~~-~~~~ 148 (577)
.....+++.+ +.+.+. .+=.+|+|++... ..-+.+...+-....++.+|.+|.+.. +..... -...
T Consensus 85 ~~~~~i~id~ir~-l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~ 163 (329)
T PRK08058 85 PDGQSIKKDQIRY-LKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQV 163 (329)
T ss_pred cccccCCHHHHHH-HHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhcee
Confidence 1122233332 233322 3447899998653 334445444444345677777776533 333222 2468
Q ss_pred EecCCCCHHHHHHHHHH
Q 037229 149 FRMECLRHEEAWKLFQM 165 (577)
Q Consensus 149 ~~l~~L~~~~~~~Lf~~ 165 (577)
+++.+++.++..+.+..
T Consensus 164 i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 164 VEFRPLPPESLIQRLQE 180 (329)
T ss_pred eeCCCCCHHHHHHHHHH
Confidence 99999999998887765
No 194
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=59.31 E-value=15 Score=34.36 Aligned_cols=159 Identities=12% Similarity=0.026 Sum_probs=80.2
Q ss_pred ccc-HHHHHHHHHHhhcC--CCceEEEEEeccch----hHHHHHHHhCCC--cchhccCCHHHHHH------------HH
Q 037229 35 VGL-ESTFDQVWSCLVEE--EQVGIIGLYGMEGW----IQEQIRRKLGLV--DDLWARKGLEEKAM------------NI 93 (577)
Q Consensus 35 vGr-~~~~~~i~~~L~~~--~~~~vv~I~G~gGw----~~~~i~~~l~~~--~~~~~~~~~~~~~~------------~l 93 (577)
+|- .+..-...+.+... .....+-|+|..|- +++.|...+... ....-..+.++... .+
T Consensus 12 ~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~ 91 (219)
T PF00308_consen 12 VGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEF 91 (219)
T ss_dssp -TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHH
T ss_pred cCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhh
Confidence 463 23333344444443 33446789999993 666665554211 10011222222222 22
Q ss_pred HHhccccEEEEEecCCCh---hhhcc-cCCCCCC-CCCCcEEEEEeCchh---------hhhcCCCCceEecCCCCHHHH
Q 037229 94 FGILSKEFVLCWMMCGSE---LILTQ-MGVPVPN-PKRMSKVLFTTRFVE---------VYGHKEADEMFRMECLRHEEA 159 (577)
Q Consensus 94 ~~~L~kr~LlVLDdv~~~---~~~~~-l~~~~~~-~~~gsrIivTTR~~~---------v~~~~~~~~~~~l~~L~~~~~ 159 (577)
++.++.-=+|++|||... ..|.+ +..-+.. ...|.+||+|++..- +...+...-.++++++++++-
T Consensus 92 ~~~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r 171 (219)
T PF00308_consen 92 KDRLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDR 171 (219)
T ss_dssp HHHHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHH
T ss_pred hhhhhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHH
Confidence 333333348899999653 12222 1111111 134678999996432 223334456899999999999
Q ss_pred HHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCchHH
Q 037229 160 WKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLPLVL 196 (577)
Q Consensus 160 ~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai 196 (577)
.+++.+.|...... --+++..-+++.+.+-.-.+
T Consensus 172 ~~il~~~a~~~~~~---l~~~v~~~l~~~~~~~~r~L 205 (219)
T PF00308_consen 172 RRILQKKAKERGIE---LPEEVIEYLARRFRRDVREL 205 (219)
T ss_dssp HHHHHHHHHHTT-----S-HHHHHHHHHHTTSSHHHH
T ss_pred HHHHHHHHHHhCCC---CcHHHHHHHHHhhcCCHHHH
Confidence 99999988654422 22466666777776654444
No 195
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=57.17 E-value=2.7e+02 Score=30.80 Aligned_cols=169 Identities=14% Similarity=0.020 Sum_probs=90.9
Q ss_pred CCccccHHHHHHHHHHhhcC--C-C-ceEEEEEeccc-------------------------h---------------hH
Q 037229 32 DLTVGLESTFDQVWSCLVEE--E-Q-VGIIGLYGMEG-------------------------W---------------IQ 67 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~--~-~-~~vv~I~G~gG-------------------------w---------------~~ 67 (577)
+.+-+||.+..+|...+... + + -+.+.|.|.+| | +.
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y 475 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIY 475 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHH
Confidence 46679999999999988765 2 3 34888999998 1 77
Q ss_pred HHHHHHhCCCcchhccCCHHHHHHHHHH-hcc-ccEEEEEecCCChhh--hcccCCCCCC-CCCCcEEEEEeCchh----
Q 037229 68 EQIRRKLGLVDDLWARKGLEEKAMNIFG-ILS-KEFVLCWMMCGSELI--LTQMGVPVPN-PKRMSKVLFTTRFVE---- 138 (577)
Q Consensus 68 ~~i~~~l~~~~~~~~~~~~~~~~~~l~~-~L~-kr~LlVLDdv~~~~~--~~~l~~~~~~-~~~gsrIivTTR~~~---- 138 (577)
..|..++.+.... .....+.+...+.. .=+ +..++++|.++...- -+-+..-|.| ..++||.+|-+-...
T Consensus 476 ~~I~~~lsg~~~~-~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdlP 554 (767)
T KOG1514|consen 476 EKIWEALSGERVT-WDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMDLP 554 (767)
T ss_pred HHHHHhcccCccc-HHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccccCH
Confidence 7788888765421 22223333222220 011 567888998754311 1222233333 345788766543111
Q ss_pred -------hhhcCCCCceEecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCchHHHHHHHH
Q 037229 139 -------VYGHKEADEMFRMECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLPLVLVTTARA 202 (577)
Q Consensus 139 -------v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~ 202 (577)
|+..++ -..+..++-++++-.++.....-+.........+-++++|+.--|-.-.|+...-++
T Consensus 555 Er~l~nrvsSRlg-~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA 624 (767)
T KOG1514|consen 555 ERLLMNRVSSRLG-LTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRA 624 (767)
T ss_pred HHHhccchhhhcc-ceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 111111 123455666777666666555433322223344455666666566555555544333
No 196
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=57.05 E-value=2.4e+02 Score=29.19 Aligned_cols=107 Identities=12% Similarity=0.007 Sum_probs=65.2
Q ss_pred cEEEEEecCCCh-----------hhhcccCCCCCCCCCCcEEEEEeCchhhhhcC------CCCceEecCCCCHHHHHHH
Q 037229 100 EFVLCWMMCGSE-----------LILTQMGVPVPNPKRMSKVLFTTRFVEVYGHK------EADEMFRMECLRHEEAWKL 162 (577)
Q Consensus 100 r~LlVLDdv~~~-----------~~~~~l~~~~~~~~~gsrIivTTR~~~v~~~~------~~~~~~~l~~L~~~~~~~L 162 (577)
|=+||+|+.-.. .+|... +- ..+=-.||++|-+....+.. .+.+.+.+...+.+-|.+.
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~---Lv-~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~y 224 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAAS---LV-QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQY 224 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHH---HH-hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHH
Confidence 568999998543 234332 11 12335688888776554322 2345678888899999999
Q ss_pred HHHhhCCCCCC------------CC-----CChhHHHHHHHHHcCCCchHHHHHHHHHhcCCCcc
Q 037229 163 FQMKVGKETMD------------DH-----SDIPKLVEIVTKECGGLPLVLVTTARAMAYKKTIF 210 (577)
Q Consensus 163 f~~~a~~~~~~------------~~-----~~~~~~~~~i~~~c~glPLai~~~g~~L~~~~~~~ 210 (577)
...+....... .. .....-....+...||=-.-+..+++.++...+++
T Consensus 225 V~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~ 289 (431)
T PF10443_consen 225 VLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPE 289 (431)
T ss_pred HHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHH
Confidence 88887543100 00 11223344567778888888888888887744433
No 197
>PRK08181 transposase; Validated
Probab=56.77 E-value=9.2 Score=36.99 Aligned_cols=83 Identities=11% Similarity=-0.093 Sum_probs=37.9
Q ss_pred eEEEEEeccc----hhHHHHHHHhCCCcchhccCCHHHHHHHHHH---------hcc---ccEEEEEecCCCh--hhh--
Q 037229 55 GIIGLYGMEG----WIQEQIRRKLGLVDDLWARKGLEEKAMNIFG---------ILS---KEFVLCWMMCGSE--LIL-- 114 (577)
Q Consensus 55 ~vv~I~G~gG----w~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~---------~L~---kr~LlVLDdv~~~--~~~-- 114 (577)
.-+.++|..| ++...|..++.......-..+..++...+.. .++ +-=|||+||+... .+|
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~~~~~~~~ 186 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYVTKDQAET 186 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEeccccccCCHHHH
Confidence 3477888888 5555554443221111122233333333321 222 3349999999643 121
Q ss_pred cccCCCCCCCCCCcEEEEEeCch
Q 037229 115 TQMGVPVPNPKRMSKVLFTTRFV 137 (577)
Q Consensus 115 ~~l~~~~~~~~~gsrIivTTR~~ 137 (577)
+.+...+.....+..+||||...
T Consensus 187 ~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 187 SVLFELISARYERRSILITANQP 209 (269)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCC
Confidence 12222222111123488888743
No 198
>PRK06835 DNA replication protein DnaC; Validated
Probab=54.99 E-value=15 Score=36.76 Aligned_cols=82 Identities=16% Similarity=0.124 Sum_probs=39.0
Q ss_pred eEEEEEeccc----hhHHHHHHHhCCCcchhccCCHHHHHHHHHHh-----------cc--cc-EEEEEecCCCh--hhh
Q 037229 55 GIIGLYGMEG----WIQEQIRRKLGLVDDLWARKGLEEKAMNIFGI-----------LS--KE-FVLCWMMCGSE--LIL 114 (577)
Q Consensus 55 ~vv~I~G~gG----w~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~-----------L~--kr-~LlVLDdv~~~--~~~ 114 (577)
.-+.++|..| ++...|+..+.......-..+..++...+... +. .+ =||||||+... ..|
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~~DLLIIDDlG~e~~t~~ 263 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLINCDLLIIDDLGTEKITEF 263 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhccCCEEEEeccCCCCCCHH
Confidence 6688889888 55555555543221111222233333333211 22 23 38999999543 222
Q ss_pred --cccCCCCCC-CCCCcEEEEEeCc
Q 037229 115 --TQMGVPVPN-PKRMSKVLFTTRF 136 (577)
Q Consensus 115 --~~l~~~~~~-~~~gsrIivTTR~ 136 (577)
+.+..-+.. -..+..+||||..
T Consensus 264 ~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 264 SKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred HHHHHHHHHHHHHHCCCCEEEECCC
Confidence 223222221 1224458888863
No 199
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=52.18 E-value=39 Score=38.72 Aligned_cols=44 Identities=14% Similarity=0.228 Sum_probs=32.4
Q ss_pred CCccccHHHHHHHHHHhhcC--------CCceEEEEEeccc----hhHHHHHHHhC
Q 037229 32 DLTVGLESTFDQVWSCLVEE--------EQVGIIGLYGMEG----WIQEQIRRKLG 75 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~--------~~~~vv~I~G~gG----w~~~~i~~~l~ 75 (577)
..++|.+..++.+.+.+... ....++-++|+.| .+.+.+++.+.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~ 621 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLY 621 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 57899999999999988542 2345888999999 35556666553
No 200
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=52.08 E-value=73 Score=35.94 Aligned_cols=80 Identities=15% Similarity=0.188 Sum_probs=48.0
Q ss_pred CCccccHHHHHHHHHHhhcC--------CCceEEEEEeccc----hhHHHHHHHhCCCcchh------ccCCHHH-----
Q 037229 32 DLTVGLESTFDQVWSCLVEE--------EQVGIIGLYGMEG----WIQEQIRRKLGLVDDLW------ARKGLEE----- 88 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~--------~~~~vv~I~G~gG----w~~~~i~~~l~~~~~~~------~~~~~~~----- 88 (577)
..++|.+..++.|.+.+... .-..++-++|+.| .+.+.+++.+...--.. +......
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~ 533 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAP 533 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCC
Confidence 56789999999999887742 1235688999999 36666666654211000 0000011
Q ss_pred -------HHHHHHHhcc-cc-EEEEEecCCCh
Q 037229 89 -------KAMNIFGILS-KE-FVLCWMMCGSE 111 (577)
Q Consensus 89 -------~~~~l~~~L~-kr-~LlVLDdv~~~ 111 (577)
-...+.+.++ +. -+++||++...
T Consensus 534 ~gyvg~~~~~~l~~~~~~~p~~VvllDEieka 565 (731)
T TIGR02639 534 PGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKA 565 (731)
T ss_pred CCCcccchhhHHHHHHHhCCCeEEEEechhhc
Confidence 1234556666 44 49999999764
No 201
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=51.67 E-value=7.5 Score=21.60 Aligned_cols=11 Identities=45% Similarity=0.619 Sum_probs=4.5
Q ss_pred CcCcEeccccc
Q 037229 369 GNLACLNLENT 379 (577)
Q Consensus 369 ~~L~~L~l~~~ 379 (577)
++|++|++++|
T Consensus 2 ~~L~~L~l~~n 12 (24)
T PF13516_consen 2 PNLETLDLSNN 12 (24)
T ss_dssp TT-SEEE-TSS
T ss_pred CCCCEEEccCC
Confidence 34555555555
No 202
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=50.29 E-value=77 Score=31.72 Aligned_cols=91 Identities=11% Similarity=0.024 Sum_probs=55.7
Q ss_pred EEEEEecCCCh--hhhcccCCCCCCCCCCcEEEEEeCchh-hhhcCC-CCceEecCCCCHHHHHHHHHHhhCCCCCCCCC
Q 037229 101 FVLCWMMCGSE--LILTQMGVPVPNPKRMSKVLFTTRFVE-VYGHKE-ADEMFRMECLRHEEAWKLFQMKVGKETMDDHS 176 (577)
Q Consensus 101 ~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~~~-v~~~~~-~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~ 176 (577)
-.+|+|++..- ...+.+...+-.-..++.+|+||.+.+ +..... -...+.+.+++.+++.+.+.......
T Consensus 108 kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~~------ 181 (328)
T PRK05707 108 KVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPES------ 181 (328)
T ss_pred eEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcccC------
Confidence 34577999764 334444444433234667777776654 433322 24578999999999998887653111
Q ss_pred ChhHHHHHHHHHcCCCchHHHH
Q 037229 177 DIPKLVEIVTKECGGLPLVLVT 198 (577)
Q Consensus 177 ~~~~~~~~i~~~c~glPLai~~ 198 (577)
..+-+..++..++|.|.....
T Consensus 182 -~~~~~~~~l~la~Gsp~~A~~ 202 (328)
T PRK05707 182 -DERERIELLTLAGGSPLRALQ 202 (328)
T ss_pred -ChHHHHHHHHHcCCCHHHHHH
Confidence 123455678899999975443
No 203
>PRK06526 transposase; Provisional
Probab=49.83 E-value=45 Score=31.96 Aligned_cols=12 Identities=17% Similarity=-0.053 Sum_probs=9.1
Q ss_pred ccEEEEEecCCC
Q 037229 99 KEFVLCWMMCGS 110 (577)
Q Consensus 99 kr~LlVLDdv~~ 110 (577)
+.-+||+||+..
T Consensus 159 ~~dlLIIDD~g~ 170 (254)
T PRK06526 159 RYPLLIVDEVGY 170 (254)
T ss_pred cCCEEEEccccc
Confidence 334899999964
No 204
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=49.46 E-value=40 Score=32.83 Aligned_cols=79 Identities=15% Similarity=0.124 Sum_probs=50.8
Q ss_pred CccccHHHHHHHHHHhhcC------CCceEEEEEeccc----hhHHHHHHHhC---CCc--------------chhccCC
Q 037229 33 LTVGLESTFDQVWSCLVEE------EQVGIIGLYGMEG----WIQEQIRRKLG---LVD--------------DLWARKG 85 (577)
Q Consensus 33 ~~vGr~~~~~~i~~~L~~~------~~~~vv~I~G~gG----w~~~~i~~~l~---~~~--------------~~~~~~~ 85 (577)
.++|.--.++.|+..+..- ...-|++.+|..| |+.+.|++.+- ..+ ..--..-
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~ie~Y 162 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKIEDY 162 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHHHHH
Confidence 3466666666666666543 5678999999998 55555554442 111 1101222
Q ss_pred HHHHHHHHHHhcc--ccEEEEEecCCCh
Q 037229 86 LEEKAMNIFGILS--KEFVLCWMMCGSE 111 (577)
Q Consensus 86 ~~~~~~~l~~~L~--kr~LlVLDdv~~~ 111 (577)
.+++..++++.++ +|-|.|+|+|+..
T Consensus 163 k~eL~~~v~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 163 KEELKNRVRGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred HHHHHHHHHHHHHhcCCceEEechhhhc
Confidence 3567778888887 9999999999764
No 205
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=49.22 E-value=1e+02 Score=34.00 Aligned_cols=137 Identities=17% Similarity=0.140 Sum_probs=82.7
Q ss_pred CCccccHHHHHHHHHHhhcC---C--CceEEEEEeccch----hHHHHHHHhCCCcchh---ccCCH-----------HH
Q 037229 32 DLTVGLESTFDQVWSCLVEE---E--QVGIIGLYGMEGW----IQEQIRRKLGLVDDLW---ARKGL-----------EE 88 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~---~--~~~vv~I~G~gGw----~~~~i~~~l~~~~~~~---~~~~~-----------~~ 88 (577)
.+-+|.++.+++|+++|.-. + .-.+++.||++|- +-+.|++.++.+.-.. ...|. ..
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGa 402 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGA 402 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcccccccccc
Confidence 56699999999999999754 2 3369999999994 8888999886542100 01111 12
Q ss_pred HHHHHHHhcc----ccEEEEEecCCCh---------hhhcccCCC-----CCCC----C-CCcEE-EEEeCch-h-h-hh
Q 037229 89 KAMNIFGILS----KEFVLCWMMCGSE---------LILTQMGVP-----VPNP----K-RMSKV-LFTTRFV-E-V-YG 141 (577)
Q Consensus 89 ~~~~l~~~L~----kr~LlVLDdv~~~---------~~~~~l~~~-----~~~~----~-~gsrI-ivTTR~~-~-v-~~ 141 (577)
+..+|.+.++ +.=+++||.|+.. ..+-++..| |.+. . -=|.| .|||-+. + + +.
T Consensus 403 mPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~P 482 (782)
T COG0466 403 MPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAP 482 (782)
T ss_pred CChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChH
Confidence 3334444444 6679999999742 112122111 1111 0 01444 4444332 1 2 34
Q ss_pred cCCCCceEecCCCCHHHHHHHHHHhhC
Q 037229 142 HKEADEMFRMECLRHEEAWKLFQMKVG 168 (577)
Q Consensus 142 ~~~~~~~~~l~~L~~~~~~~Lf~~~a~ 168 (577)
..+-+.++++.+-+.+|-.++-.++..
T Consensus 483 LlDRMEiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 483 LLDRMEVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred HhcceeeeeecCCChHHHHHHHHHhcc
Confidence 445577899999999998888777654
No 206
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=49.18 E-value=1.5e+02 Score=29.63 Aligned_cols=136 Identities=12% Similarity=0.090 Sum_probs=72.7
Q ss_pred CCccccHHHHHHHHHHhhcC---CCceEEEEEeccch----------------------------------hHHHHHHHh
Q 037229 32 DLTVGLESTFDQVWSCLVEE---EQVGIIGLYGMEGW----------------------------------IQEQIRRKL 74 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~---~~~~vv~I~G~gGw----------------------------------~~~~i~~~l 74 (577)
..++|-.++..++-+|+... +.-..|.|+|+.|. ..+.|..|+
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql 103 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQL 103 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHHHH
Confidence 46799999999999998876 55556778898881 333344443
Q ss_pred CCCcc--hhccCCHHHHHHHHHHhcc-------ccEEEEEecCCCh----hh---hcccCCCCCCCCCCcEEEEEeCchh
Q 037229 75 GLVDD--LWARKGLEEKAMNIFGILS-------KEFVLCWMMCGSE----LI---LTQMGVPVPNPKRMSKVLFTTRFVE 138 (577)
Q Consensus 75 ~~~~~--~~~~~~~~~~~~~l~~~L~-------kr~LlVLDdv~~~----~~---~~~l~~~~~~~~~gsrIivTTR~~~ 138 (577)
..... .....+..+...++-+.|+ -++..|+|.++-. .| ++-+...-....+-+-|-+|||-..
T Consensus 104 ~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~ 183 (408)
T KOG2228|consen 104 ALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDI 183 (408)
T ss_pred HHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccH
Confidence 22111 0122233333344444443 2578888877542 11 1111111112344567888998433
Q ss_pred h-------hhcCCCCceEecCCCCHHHHHHHHHHhh
Q 037229 139 V-------YGHKEADEMFRMECLRHEEAWKLFQMKV 167 (577)
Q Consensus 139 v-------~~~~~~~~~~~l~~L~~~~~~~Lf~~~a 167 (577)
. -.......++-++.+.-++-..+++.-.
T Consensus 184 lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 184 LELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 2 2222223355566666666666666554
No 207
>CHL00195 ycf46 Ycf46; Provisional
Probab=48.06 E-value=2.6e+02 Score=29.78 Aligned_cols=158 Identities=16% Similarity=0.113 Sum_probs=84.5
Q ss_pred CCccccHHHHHHHHHHh---hcC------CCceEEEEEeccc----hhHHHHHHHhCCCcchhc--------cCCHHHHH
Q 037229 32 DLTVGLESTFDQVWSCL---VEE------EQVGIIGLYGMEG----WIQEQIRRKLGLVDDLWA--------RKGLEEKA 90 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L---~~~------~~~~vv~I~G~gG----w~~~~i~~~l~~~~~~~~--------~~~~~~~~ 90 (577)
+++.|.+..++.+.+.. ... ...+-|-++|..| .+.+.|+..++..--..+ ....+...
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l 307 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRM 307 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHHHHH
Confidence 56889888777666532 111 3345678999999 377777777664321100 11122233
Q ss_pred HHHHHhcc--ccEEEEEecCCChhh--------------hcccCCCCCCCCCCcEEEEEeCchhhh-----hcCCCCceE
Q 037229 91 MNIFGILS--KEFVLCWMMCGSELI--------------LTQMGVPVPNPKRMSKVLFTTRFVEVY-----GHKEADEMF 149 (577)
Q Consensus 91 ~~l~~~L~--kr~LlVLDdv~~~~~--------------~~~l~~~~~~~~~gsrIivTTR~~~v~-----~~~~~~~~~ 149 (577)
+.+.+..+ .+++|++|+++.... ...+...+.....+--||.||...+.. +.-.-+..+
T Consensus 308 ~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i 387 (489)
T CHL00195 308 RQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIF 387 (489)
T ss_pred HHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEE
Confidence 33333334 789999999964210 001111111122233455566554421 211335678
Q ss_pred ecCCCCHHHHHHHHHHhhCCCCCC--CCCChhHHHHHHHHHcCCCc
Q 037229 150 RMECLRHEEAWKLFQMKVGKETMD--DHSDIPKLVEIVTKECGGLP 193 (577)
Q Consensus 150 ~l~~L~~~~~~~Lf~~~a~~~~~~--~~~~~~~~~~~i~~~c~glP 193 (577)
.+..-+.++-.++|..+....... ...+ ...+++.+.|+-
T Consensus 388 ~v~lP~~~eR~~Il~~~l~~~~~~~~~~~d----l~~La~~T~GfS 429 (489)
T CHL00195 388 FLDLPSLEEREKIFKIHLQKFRPKSWKKYD----IKKLSKLSNKFS 429 (489)
T ss_pred EeCCcCHHHHHHHHHHHHhhcCCCcccccC----HHHHHhhcCCCC
Confidence 888889899899998877543211 1122 344556666653
No 208
>PRK08939 primosomal protein DnaI; Reviewed
Probab=46.41 E-value=38 Score=33.53 Aligned_cols=100 Identities=16% Similarity=0.063 Sum_probs=49.9
Q ss_pred ccHHHHHHHHHHhhcC---CCceEEEEEeccc----hhHHHHHHHhCCCcchhccCCHHHHHHHHH---------Hhcc-
Q 037229 36 GLESTFDQVWSCLVEE---EQVGIIGLYGMEG----WIQEQIRRKLGLVDDLWARKGLEEKAMNIF---------GILS- 98 (577)
Q Consensus 36 Gr~~~~~~i~~~L~~~---~~~~vv~I~G~gG----w~~~~i~~~l~~~~~~~~~~~~~~~~~~l~---------~~L~- 98 (577)
++....+...+++..- ...+-+.++|..| ++...|+..+..............+...++ +.+.
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~ 214 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDA 214 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHH
Confidence 5656666666666532 2345677888888 566666666532211111112222222222 2222
Q ss_pred --ccEEEEEecCCCh--hhhcc--cCCCC-CCC-CCCcEEEEEeC
Q 037229 99 --KEFVLCWMMCGSE--LILTQ--MGVPV-PNP-KRMSKVLFTTR 135 (577)
Q Consensus 99 --kr~LlVLDdv~~~--~~~~~--l~~~~-~~~-~~gsrIivTTR 135 (577)
+-=||||||+..+ ..|.. +...+ ... ..+-.+|+||-
T Consensus 215 l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 215 VKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred hcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 4448999999654 44542 43333 211 23445777775
No 209
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=45.73 E-value=2.6e+02 Score=31.55 Aligned_cols=158 Identities=13% Similarity=0.094 Sum_probs=87.6
Q ss_pred CCccccHHHHHHHHHHhhcC------------CCceEEEEEeccc----hhHHHHHHHhCCCcchh--------ccCCHH
Q 037229 32 DLTVGLESTFDQVWSCLVEE------------EQVGIIGLYGMEG----WIQEQIRRKLGLVDDLW--------ARKGLE 87 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~------------~~~~vv~I~G~gG----w~~~~i~~~l~~~~~~~--------~~~~~~ 87 (577)
.++.|.+..++++.+.+... ...+-+-++|..| .+.+.++...+..--.. .....+
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese 532 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESE 532 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHH
Confidence 67889999998888766421 2234578899999 36777777665432100 011223
Q ss_pred HHHHHHHHhcc--ccEEEEEecCCChh--------------hhcccCCCCCC--CCCCcEEEEEeCchhhhhc--C---C
Q 037229 88 EKAMNIFGILS--KEFVLCWMMCGSEL--------------ILTQMGVPVPN--PKRMSKVLFTTRFVEVYGH--K---E 144 (577)
Q Consensus 88 ~~~~~l~~~L~--kr~LlVLDdv~~~~--------------~~~~l~~~~~~--~~~gsrIivTTR~~~v~~~--~---~ 144 (577)
...+.+.+..+ ....|++|++.... ....+...+.. ...+--||.||...+.... . .
T Consensus 533 ~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgR 612 (733)
T TIGR01243 533 KAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGR 612 (733)
T ss_pred HHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCc
Confidence 33444554444 67899999985320 01112112211 1223445666655544221 1 2
Q ss_pred CCceEecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCc
Q 037229 145 ADEMFRMECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLP 193 (577)
Q Consensus 145 ~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP 193 (577)
-+..+.+...+.++-.++|..+.-........++ ..+++.+.|+-
T Consensus 613 fd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l----~~la~~t~g~s 657 (733)
T TIGR01243 613 FDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDL----EELAEMTEGYT 657 (733)
T ss_pred cceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCH----HHHHHHcCCCC
Confidence 3567888888988888898766543321222233 34556677754
No 210
>PRK12377 putative replication protein; Provisional
Probab=44.40 E-value=1.2e+02 Score=29.00 Aligned_cols=58 Identities=14% Similarity=0.038 Sum_probs=29.7
Q ss_pred CceEEEEEeccc----hhHHHHHHHhCCCcchhccCCHHHHHHHHHH----------hc---cccEEEEEecCCC
Q 037229 53 QVGIIGLYGMEG----WIQEQIRRKLGLVDDLWARKGLEEKAMNIFG----------IL---SKEFVLCWMMCGS 110 (577)
Q Consensus 53 ~~~vv~I~G~gG----w~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~----------~L---~kr~LlVLDdv~~ 110 (577)
+...+.++|..| .+...|+..+.......-..+..++...++. .+ .+-=||||||+..
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~~~dLLiIDDlg~ 174 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQELCKVDLLVLDEIGI 174 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCC
Confidence 346788999888 4555555554322111122223333333322 22 2444999999943
No 211
>PHA00729 NTP-binding motif containing protein
Probab=43.03 E-value=89 Score=29.27 Aligned_cols=111 Identities=9% Similarity=-0.028 Sum_probs=59.8
Q ss_pred HHHHHhhcCCCceEEEEEeccc----hhHHHHHHHhCCC-------------cchhccCCHHHHHHHHHHhcc--cc-EE
Q 037229 43 QVWSCLVEEEQVGIIGLYGMEG----WIQEQIRRKLGLV-------------DDLWARKGLEEKAMNIFGILS--KE-FV 102 (577)
Q Consensus 43 ~i~~~L~~~~~~~vv~I~G~gG----w~~~~i~~~l~~~-------------~~~~~~~~~~~~~~~l~~~L~--kr-~L 102 (577)
++++-+.. .+...|.|+|..| ++...++..+... .......+.+++...+..... .+ =+
T Consensus 7 ~~~~~l~~-~~f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fid~~~Ll~~L~~a~~~~~~~dl 85 (226)
T PHA00729 7 KIVSAYNN-NGFVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFFELPDALEKIQDAIDNDYRIPL 85 (226)
T ss_pred HHHHHHhc-CCeEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEEEHHHHHHHHHHHHhcCCCCCE
Confidence 34444544 4556788999999 5555555554210 001134566777777776655 33 37
Q ss_pred EEEecC--CChh-hhcccCCCCCCCCCCcEEEEEeCchhhhhcCC-CCceEecCCCCHHHHHHHHHHhhC
Q 037229 103 LCWMMC--GSEL-ILTQMGVPVPNPKRMSKVLFTTRFVEVYGHKE-ADEMFRMECLRHEEAWKLFQMKVG 168 (577)
Q Consensus 103 lVLDdv--~~~~-~~~~l~~~~~~~~~gsrIivTTR~~~v~~~~~-~~~~~~l~~L~~~~~~~Lf~~~a~ 168 (577)
||+||+ |-.. .|..- . . +-...+...+. ....+.+.+++.++..+.+..+..
T Consensus 86 LIIDd~G~~~~~~~wh~~-------~----~---~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~Rg~ 141 (226)
T PHA00729 86 IIFDDAGIWLSKYVWYED-------Y----M---KTFYKIYALIRTRVSAVIFTTPSPEDLAFYLREKGW 141 (226)
T ss_pred EEEeCCchhhcccchhhh-------c----c---chHHHHHHHHHhhCcEEEEecCCHHHHHHHHHhCCC
Confidence 999994 3221 23310 0 0 00011111111 134567777888888888888654
No 212
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=42.87 E-value=21 Score=31.42 Aligned_cols=50 Identities=8% Similarity=-0.047 Sum_probs=30.6
Q ss_pred HHHHHHHhcc-ccE-EEEEecCCCh-----hhhcccCCCCCCCCCCcEEEEEeCchh
Q 037229 89 KAMNIFGILS-KEF-VLCWMMCGSE-----LILTQMGVPVPNPKRMSKVLFTTRFVE 138 (577)
Q Consensus 89 ~~~~l~~~L~-kr~-LlVLDdv~~~-----~~~~~l~~~~~~~~~gsrIivTTR~~~ 138 (577)
..+..++.+. ..| |+|||++-.. ...+++...+.....+.-+|+|.|+..
T Consensus 83 ~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 83 GWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 3444555555 444 9999999654 223344444444445667999999854
No 213
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=42.62 E-value=3.4e+02 Score=26.68 Aligned_cols=128 Identities=16% Similarity=0.050 Sum_probs=72.2
Q ss_pred hHHHHHHHhCCCcchhccCCHHHHHHHHHHhcc--ccEEEEEecCCCh-----hh----hcccCCCCCCCCCCcEEEEEe
Q 037229 66 IQEQIRRKLGLVDDLWARKGLEEKAMNIFGILS--KEFVLCWMMCGSE-----LI----LTQMGVPVPNPKRMSKVLFTT 134 (577)
Q Consensus 66 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~--kr~LlVLDdv~~~-----~~----~~~l~~~~~~~~~gsrIivTT 134 (577)
+...|+.+++.... ...+...+...+...++ +-=+||+|.+-+. .+ ++.++ .+.+.-+=+-|.+-|
T Consensus 112 ~Y~~IL~~lgaP~~--~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK-~L~NeL~ipiV~vGt 188 (302)
T PF05621_consen 112 FYSAILEALGAPYR--PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALK-FLGNELQIPIVGVGT 188 (302)
T ss_pred HHHHHHHHhCcccC--CCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHH-HHhhccCCCeEEecc
Confidence 88999999987653 45566667777777887 6668999999652 11 22221 112222235566666
Q ss_pred CchhhhhcCCC-----CceEecCCCCHH-HHHHHHHHhh--CCCCCCCCCChhHHHHHHHHHcCCCchHH
Q 037229 135 RFVEVYGHKEA-----DEMFRMECLRHE-EAWKLFQMKV--GKETMDDHSDIPKLVEIVTKECGGLPLVL 196 (577)
Q Consensus 135 R~~~v~~~~~~-----~~~~~l~~L~~~-~~~~Lf~~~a--~~~~~~~~~~~~~~~~~i~~~c~glPLai 196 (577)
++.--+-..++ ..++.+..-..+ +...|+.... ..=.....-...+++..|...++|..=.+
T Consensus 189 ~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l 258 (302)
T PF05621_consen 189 REAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGEL 258 (302)
T ss_pred HHHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHH
Confidence 64433322221 234556555444 4444443322 11111233345689999999999986443
No 214
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=41.61 E-value=47 Score=33.50 Aligned_cols=32 Identities=22% Similarity=0.308 Sum_probs=28.3
Q ss_pred CccccHHHHHHHHHHhhcC-----CCceEEEEEeccc
Q 037229 33 LTVGLESTFDQVWSCLVEE-----EQVGIIGLYGMEG 64 (577)
Q Consensus 33 ~~vGr~~~~~~i~~~L~~~-----~~~~vv~I~G~gG 64 (577)
+++|.++.++++++++... ...++++++|+.|
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPG 88 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVG 88 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCC
Confidence 7999999999999999764 3568999999999
No 215
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=40.67 E-value=23 Score=20.64 Aligned_cols=12 Identities=50% Similarity=0.736 Sum_probs=6.3
Q ss_pred CCCEEeccCCCC
Q 037229 347 SLQHLDLSSSGI 358 (577)
Q Consensus 347 ~L~~L~L~~~~i 358 (577)
+|++|+|++|.+
T Consensus 3 ~L~~LdL~~N~i 14 (28)
T smart00368 3 SLRELDLSNNKL 14 (28)
T ss_pred ccCEEECCCCCC
Confidence 455555555544
No 216
>PRK08116 hypothetical protein; Validated
Probab=40.31 E-value=25 Score=33.98 Aligned_cols=35 Identities=11% Similarity=0.066 Sum_probs=19.0
Q ss_pred EEEEecCCC--hhhhc--ccCCCCCC-CCCCcEEEEEeCc
Q 037229 102 VLCWMMCGS--ELILT--QMGVPVPN-PKRMSKVLFTTRF 136 (577)
Q Consensus 102 LlVLDdv~~--~~~~~--~l~~~~~~-~~~gsrIivTTR~ 136 (577)
||||||+.. ..+|. .+..-+.. -..|..+|+||..
T Consensus 181 lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 181 LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 899999943 23332 22222211 1345668888863
No 217
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=37.82 E-value=4.1e+02 Score=27.87 Aligned_cols=90 Identities=9% Similarity=-0.059 Sum_probs=52.2
Q ss_pred cEEEEEecCCCh---hhh-cccCCCCCC-CCCCcEEEEEeC-chhh--------hhcCCCCceEecCCCCHHHHHHHHHH
Q 037229 100 EFVLCWMMCGSE---LIL-TQMGVPVPN-PKRMSKVLFTTR-FVEV--------YGHKEADEMFRMECLRHEEAWKLFQM 165 (577)
Q Consensus 100 r~LlVLDdv~~~---~~~-~~l~~~~~~-~~~gsrIivTTR-~~~v--------~~~~~~~~~~~l~~L~~~~~~~Lf~~ 165 (577)
.-+|++||+... ..+ +.+...+.. ...|..||+||. ...- ...+...-.+.+++.+.+.-.+++.+
T Consensus 195 ~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~ 274 (440)
T PRK14088 195 VDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARK 274 (440)
T ss_pred CCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHH
Confidence 448999999743 111 122222211 123456888875 3221 22233345789999999999999988
Q ss_pred hhCCCCCCCCCChhHHHHHHHHHcCCC
Q 037229 166 KVGKETMDDHSDIPKLVEIVTKECGGL 192 (577)
Q Consensus 166 ~a~~~~~~~~~~~~~~~~~i~~~c~gl 192 (577)
.+....... -+++...|++.+.|-
T Consensus 275 ~~~~~~~~l---~~ev~~~Ia~~~~~~ 298 (440)
T PRK14088 275 MLEIEHGEL---PEEVLNFVAENVDDN 298 (440)
T ss_pred HHHhcCCCC---CHHHHHHHHhccccC
Confidence 875432122 245667777777664
No 218
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=37.00 E-value=3.6e+02 Score=30.50 Aligned_cols=158 Identities=11% Similarity=0.082 Sum_probs=82.1
Q ss_pred CCccccHHHHHHHHHHhhcC------------CCceEEEEEeccc----hhHHHHHHHhCCCcchhc--------cCCHH
Q 037229 32 DLTVGLESTFDQVWSCLVEE------------EQVGIIGLYGMEG----WIQEQIRRKLGLVDDLWA--------RKGLE 87 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~------------~~~~vv~I~G~gG----w~~~~i~~~l~~~~~~~~--------~~~~~ 87 (577)
+++.|.++.+++|.+++... ...+-|.++|..| .+.+.|+..++...-... .....
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~~g~~~ 257 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYYGESE 257 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcccccHHH
Confidence 56889999999998876421 2235678999999 367777776654311000 00112
Q ss_pred HHHHHHHHhc-c-ccEEEEEecCCChh-------------hhcccCCCCCC-CCCCcEEEE-EeCchh-hhhcC----CC
Q 037229 88 EKAMNIFGIL-S-KEFVLCWMMCGSEL-------------ILTQMGVPVPN-PKRMSKVLF-TTRFVE-VYGHK----EA 145 (577)
Q Consensus 88 ~~~~~l~~~L-~-kr~LlVLDdv~~~~-------------~~~~l~~~~~~-~~~gsrIiv-TTR~~~-v~~~~----~~ 145 (577)
.....+.+.. . ...+|++|++.... ....+...+.. ...+..++| ||.... +-... .-
T Consensus 258 ~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRf 337 (733)
T TIGR01243 258 ERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRF 337 (733)
T ss_pred HHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchhc
Confidence 2233333333 3 56799999985420 01122211211 122334454 444332 21111 12
Q ss_pred CceEecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCc
Q 037229 146 DEMFRMECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLP 193 (577)
Q Consensus 146 ~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP 193 (577)
...+.+...+.++-.+++..+.-....... .....+++.+.|+-
T Consensus 338 d~~i~i~~P~~~~R~~Il~~~~~~~~l~~d----~~l~~la~~t~G~~ 381 (733)
T TIGR01243 338 DREIVIRVPDKRARKEILKVHTRNMPLAED----VDLDKLAEVTHGFV 381 (733)
T ss_pred cEEEEeCCcCHHHHHHHHHHHhcCCCCccc----cCHHHHHHhCCCCC
Confidence 346777778888888888755422211111 12455777777764
No 219
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=36.89 E-value=33 Score=31.75 Aligned_cols=57 Identities=12% Similarity=0.022 Sum_probs=32.9
Q ss_pred CCceEEEEEeccchhHHHHHHHhCCCcch--hccCCHHHHHHHHHHhcc-ccEEEEEecC
Q 037229 52 EQVGIIGLYGMEGWIQEQIRRKLGLVDDL--WARKGLEEKAMNIFGILS-KEFVLCWMMC 108 (577)
Q Consensus 52 ~~~~vv~I~G~gGw~~~~i~~~l~~~~~~--~~~~~~~~~~~~l~~~L~-kr~LlVLDdv 108 (577)
+.+.++.|.||||-+..+|+++-...-.. .-...+..-...||++|. ..|-|+=.-+
T Consensus 84 d~~d~ivIAGMGG~lI~~ILee~~~~l~~~~rlILQPn~~~~~LR~~L~~~~~~I~~E~i 143 (226)
T COG2384 84 DEIDVIVIAGMGGTLIREILEEGKEKLKGVERLILQPNIHTYELREWLSANSYEIKAETI 143 (226)
T ss_pred CCcCEEEEeCCcHHHHHHHHHHhhhhhcCcceEEECCCCCHHHHHHHHHhCCceeeeeee
Confidence 46899999999997555555554321110 011222333456778887 7776654433
No 220
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=36.54 E-value=13 Score=34.54 Aligned_cols=44 Identities=11% Similarity=0.077 Sum_probs=27.0
Q ss_pred EEEEEecCCCh---hhhcccCCCCCCCCCCcEEEEEeCchhhhhcCC
Q 037229 101 FVLCWMMCGSE---LILTQMGVPVPNPKRMSKVLFTTRFVEVYGHKE 144 (577)
Q Consensus 101 ~LlVLDdv~~~---~~~~~l~~~~~~~~~gsrIivTTR~~~v~~~~~ 144 (577)
-++|||||... .....+...+....+.+.+||||.++.+...+.
T Consensus 160 p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a~ 206 (220)
T PF02463_consen 160 PFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDAD 206 (220)
T ss_dssp SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-S
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 38999999865 223333333333345688999999999877653
No 221
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=36.27 E-value=65 Score=35.38 Aligned_cols=136 Identities=18% Similarity=0.125 Sum_probs=80.1
Q ss_pred CCccccHHHHHHHHHHhhcC-----CCceEEEEEeccch----hHHHHHHHhCCCcchh---ccCC-----------HHH
Q 037229 32 DLTVGLESTFDQVWSCLVEE-----EQVGIIGLYGMEGW----IQEQIRRKLGLVDDLW---ARKG-----------LEE 88 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~-----~~~~vv~I~G~gGw----~~~~i~~~l~~~~~~~---~~~~-----------~~~ 88 (577)
++-+|+++.+++|++++.-. -+=++++.+|++|- +-+.|++.++.+.... ...+ ...
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGA 490 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGA 490 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeecc
Confidence 57799999999999998754 34579999999994 8899999887653211 1111 122
Q ss_pred HHHHHHHhcc----ccEEEEEecCCCh---------hhhcccCCCCCCC----------CCCcEEEEEeCchhhh----h
Q 037229 89 KAMNIFGILS----KEFVLCWMMCGSE---------LILTQMGVPVPNP----------KRMSKVLFTTRFVEVY----G 141 (577)
Q Consensus 89 ~~~~l~~~L~----kr~LlVLDdv~~~---------~~~~~l~~~~~~~----------~~gsrIivTTR~~~v~----~ 141 (577)
+..++.+.|+ ..=|+.+|.|+.. ..+-++..|=.+. --=|+|+.-..-..+. .
T Consensus 491 MPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~p 570 (906)
T KOG2004|consen 491 MPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPP 570 (906)
T ss_pred CChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEEEeccccccCChh
Confidence 3455666665 5669999999652 1122222211110 0125665433322221 1
Q ss_pred cCCCCceEecCCCCHHHHHHHHHHhh
Q 037229 142 HKEADEMFRMECLRHEEAWKLFQMKV 167 (577)
Q Consensus 142 ~~~~~~~~~l~~L~~~~~~~Lf~~~a 167 (577)
..+-+.++++.+...+|-.++-.++.
T Consensus 571 LlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 571 LLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred hhhhhheeeccCccHHHHHHHHHHhh
Confidence 12235677777777777666665554
No 222
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=35.21 E-value=5.3e+02 Score=28.33 Aligned_cols=151 Identities=15% Similarity=0.146 Sum_probs=83.9
Q ss_pred CCccccHHHHHHHHHHhhcC------------CCceEEEEEeccch----hHHHHHHHhCCCcc---------hhccCCH
Q 037229 32 DLTVGLESTFDQVWSCLVEE------------EQVGIIGLYGMEGW----IQEQIRRKLGLVDD---------LWARKGL 86 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~------------~~~~vv~I~G~gGw----~~~~i~~~l~~~~~---------~~~~~~~ 86 (577)
+++=|.|+.+.+|.+..... ...+=|-.+|++|- +.+.++.+.+.+-- .+-. .-
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vG-eS 512 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVG-ES 512 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcC-ch
Confidence 66677888888877655432 44567789999994 77777776654321 1112 22
Q ss_pred HHHHHHHHHhcc--ccEEEEEecCCChh-------------hhcccCCCCCCCCCCcEEEE---EeCchhh-hhcCC---
Q 037229 87 EEKAMNIFGILS--KEFVLCWMMCGSEL-------------ILTQMGVPVPNPKRMSKVLF---TTRFVEV-YGHKE--- 144 (577)
Q Consensus 87 ~~~~~~l~~~L~--kr~LlVLDdv~~~~-------------~~~~l~~~~~~~~~gsrIiv---TTR~~~v-~~~~~--- 144 (577)
+.....+++.=+ -...+.+|.++... .+..+..-+........|+| |.|-..+ ...+.
T Consensus 513 Er~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGR 592 (693)
T KOG0730|consen 513 ERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGR 592 (693)
T ss_pred HHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcc
Confidence 334444444444 77999999986531 12222223322222223333 3333333 22334
Q ss_pred CCceEecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHH
Q 037229 145 ADEMFRMECLRHEEAWKLFQMKVGKETMDDHSDIPKLVE 183 (577)
Q Consensus 145 ~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~ 183 (577)
-+..+.+..-+.+--.++|..++-.......-+++++++
T Consensus 593 lD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~ 631 (693)
T KOG0730|consen 593 LDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQ 631 (693)
T ss_pred cceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHH
Confidence 355667766666777889999886554333345565544
No 223
>COG0249 MutS Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
Probab=34.04 E-value=49 Score=37.64 Aligned_cols=161 Identities=21% Similarity=0.267 Sum_probs=87.6
Q ss_pred ccHHHHHHHHH--HhhcC----CCceEEEEEe--ccc---h-------------------------hHHHHHHHhCCCcc
Q 037229 36 GLESTFDQVWS--CLVEE----EQVGIIGLYG--MEG---W-------------------------IQEQIRRKLGLVDD 79 (577)
Q Consensus 36 Gr~~~~~~i~~--~L~~~----~~~~vv~I~G--~gG---w-------------------------~~~~i~~~l~~~~~ 79 (577)
||-..+|+.++ +.-.+ ++.+++-|.| ||| | +..+|+..++..++
T Consensus 583 gRHPvvE~~~~~~fVpNd~~L~~~~~i~lITGPNM~GKSTylRQvali~imAQiGsfVPA~~A~i~ivD~IfTRiGa~DD 662 (843)
T COG0249 583 GRHPVVEAVLDNGFVPNDIDLSGNRRIILITGPNMGGKSTYLRQVALIVILAQIGSFVPAEKARIGIVDRIFTRIGAADD 662 (843)
T ss_pred cCcchhhhhccCCcccCceeeCCCceEEEEECCCCCccHHHHHHHHHHHHHHHcCCCeeHHHccccccceeeecccccch
Confidence 77777777776 34333 4578999998 678 2 55555555554432
Q ss_pred hh-ccCCHHHHHHHHHHhcc---ccEEEEEecCCCh--------hhhcccCCCCCCCCCCcEEEEEeCchhhhhcCCC--
Q 037229 80 LW-ARKGLEEKAMNIFGILS---KEFVLCWMMCGSE--------LILTQMGVPVPNPKRMSKVLFTTRFVEVYGHKEA-- 145 (577)
Q Consensus 80 ~~-~~~~~~~~~~~l~~~L~---kr~LlVLDdv~~~--------~~~~~l~~~~~~~~~gsrIivTTR~~~v~~~~~~-- 145 (577)
-. ...+.-.-..+....|. ++=|+++|.+..- -.|.-+. .+. ...+++.+.+|-..........
T Consensus 663 L~~G~STFMvEM~Eta~IL~~AT~~SLvilDEiGRGTsT~DGlaIA~Av~e-yL~-~~~~~~tLFATHy~ELt~l~~~~~ 740 (843)
T COG0249 663 LASGRSTFMVEMLETANILDNATERSLVILDEIGRGTSTYDGLAIAWAVLE-YLH-EKIGCRTLFATHYHELTELEEKLP 740 (843)
T ss_pred hhccccHHHHHHHHHHHHHHhCCCCcEEEEecccCCCCcchhHHHHHHHHH-HHH-hccCceEEEeccHHHHHHhhhccc
Confidence 11 11111112233444554 6669999999753 1243321 111 1258999999999887655443
Q ss_pred -CceEecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCchHHHHHHHHHhc
Q 037229 146 -DEMFRMECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLPLVLVTTARAMAY 205 (577)
Q Consensus 146 -~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~~ 205 (577)
...|++......+- -.|.++. ..-+..+..|-++++.+ |+|-.+...|.-...
T Consensus 741 ~v~N~h~~~~e~~~~-i~Fl~kv-----~~G~a~~SyGi~VAkla-GlP~~Vi~rA~~il~ 794 (843)
T COG0249 741 QVKNYHMSAVEEGGD-ITFLYKV-----KPGIADKSYGIHVAKLA-GLPEEVIERAREILA 794 (843)
T ss_pred ccceeEEEEEEcCCc-eEEEEEe-----ccCCCCccHHHHHHHHh-CCCHHHHHHHHHHHH
Confidence 22333332221111 1222222 22234456777776655 789888777755443
No 224
>PRK10865 protein disaggregation chaperone; Provisional
Probab=33.58 E-value=2.3e+02 Score=32.69 Aligned_cols=43 Identities=12% Similarity=0.238 Sum_probs=30.8
Q ss_pred CCccccHHHHHHHHHHhhcC-------C-CceEEEEEeccc----hhHHHHHHHh
Q 037229 32 DLTVGLESTFDQVWSCLVEE-------E-QVGIIGLYGMEG----WIQEQIRRKL 74 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~-------~-~~~vv~I~G~gG----w~~~~i~~~l 74 (577)
..++|.+..++.+...+... + ...++.++|..| ++.+.|++.+
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999988887642 1 135788999999 4556666555
No 225
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=33.52 E-value=4.1e+02 Score=30.28 Aligned_cols=45 Identities=20% Similarity=0.277 Sum_probs=32.9
Q ss_pred CCccccHHHHHHHHHHhhcC-----CCceEEEEEeccch----hHHHHHHHhCC
Q 037229 32 DLTVGLESTFDQVWSCLVEE-----EQVGIIGLYGMEGW----IQEQIRRKLGL 76 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~-----~~~~vv~I~G~gGw----~~~~i~~~l~~ 76 (577)
.+++|.++.+++|.+++... ..-.++.++|..|- +.+.|+..++.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~ 373 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNR 373 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 46789999999999977532 23357899999992 66666666643
No 226
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=32.83 E-value=4.5e+02 Score=25.20 Aligned_cols=135 Identities=10% Similarity=0.125 Sum_probs=69.2
Q ss_pred hHHHHHHHhCCCcchhccCCHHHHHHHHHHhcc--cc-EEEEEecCCCh--hhhcccCCCCC---CCCCCcEEEEEeC--
Q 037229 66 IQEQIRRKLGLVDDLWARKGLEEKAMNIFGILS--KE-FVLCWMMCGSE--LILTQMGVPVP---NPKRMSKVLFTTR-- 135 (577)
Q Consensus 66 ~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~--kr-~LlVLDdv~~~--~~~~~l~~~~~---~~~~gsrIivTTR-- 135 (577)
+...|+.++.......-....+...+.+....+ +| ..++.||.-+. +.++.++.-.. ++..-=+|+..-.
T Consensus 95 ~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~ 174 (269)
T COG3267 95 LLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPK 174 (269)
T ss_pred HHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcc
Confidence 555666666542211011223344555556665 77 89999998653 33333321111 1111111222211
Q ss_pred ------chhhhhcCCCCce-EecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCchHHHHHH
Q 037229 136 ------FVEVYGHKEADEM-FRMECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLPLVLVTTA 200 (577)
Q Consensus 136 ------~~~v~~~~~~~~~-~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g 200 (577)
-......-.-..+ |++.+++.++....+.++..+.....+---.+....|.....|.|.++.-++
T Consensus 175 L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~ 246 (269)
T COG3267 175 LRPRLRLPVLRELEQRIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLA 246 (269)
T ss_pred cchhhchHHHHhhhheEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHH
Confidence 1111111011224 8999999998887777776544312222233566778888999999987554
No 227
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=32.16 E-value=5.6e+02 Score=26.07 Aligned_cols=132 Identities=14% Similarity=0.053 Sum_probs=74.7
Q ss_pred CCccccHHHHH--HHHHHhhcCCCceEEEEEeccch----hHHHHHHHhCCCcc--------hhccCCHHHHHHHHHHhc
Q 037229 32 DLTVGLESTFD--QVWSCLVEEEQVGIIGLYGMEGW----IQEQIRRKLGLVDD--------LWARKGLEEKAMNIFGIL 97 (577)
Q Consensus 32 ~~~vGr~~~~~--~i~~~L~~~~~~~vv~I~G~gGw----~~~~i~~~l~~~~~--------~~~~~~~~~~~~~l~~~L 97 (577)
.+.||.+..+- -++.-+.+.+.+..+-.||.+|- +.+-|+..-...+. .....+..++.+.-++..
T Consensus 138 ~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~dvR~ife~aq~~~ 217 (554)
T KOG2028|consen 138 DDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTNDVRDIFEQAQNEK 217 (554)
T ss_pred HHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchHHHHHHHHHHHHHH
Confidence 34566555442 23333333377888889999993 44444443322210 012233344444444433
Q ss_pred c---ccEEEEEecCCCh--hhhcccCCCCCCCCCCcEEEE--EeCchhh---hhcCCCCceEecCCCCHHHHHHHHHHh
Q 037229 98 S---KEFVLCWMMCGSE--LILTQMGVPVPNPKRMSKVLF--TTRFVEV---YGHKEADEMFRMECLRHEEAWKLFQMK 166 (577)
Q Consensus 98 ~---kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiv--TTR~~~v---~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 166 (577)
. +|..|.+|.|-.- .|-+.+ +|.-.+|+-++| ||-+... +....-..++-++.|..++-..++.+.
T Consensus 218 ~l~krkTilFiDEiHRFNksQQD~f---LP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~ra 293 (554)
T KOG2028|consen 218 SLTKRKTILFIDEIHRFNKSQQDTF---LPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRA 293 (554)
T ss_pred hhhcceeEEEeHHhhhhhhhhhhcc---cceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHH
Confidence 3 8889999999542 333332 344456776666 5555543 222233468899999999999988874
No 228
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=31.65 E-value=1.5e+02 Score=27.86 Aligned_cols=32 Identities=22% Similarity=0.188 Sum_probs=26.1
Q ss_pred CCccccHHHHHHHHHHhhcCCCceEEEEEeccc
Q 037229 32 DLTVGLESTFDQVWSCLVEEEQVGIIGLYGMEG 64 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~~~~~vv~I~G~gG 64 (577)
.++||-|+.++++.-.-.+ ++..=+-|.||+|
T Consensus 27 ~dIVGNe~tv~rl~via~~-gnmP~liisGpPG 58 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKE-GNMPNLIISGPPG 58 (333)
T ss_pred HHhhCCHHHHHHHHHHHHc-CCCCceEeeCCCC
Confidence 5789999999997765555 6666777999999
No 229
>PRK06921 hypothetical protein; Provisional
Probab=31.46 E-value=33 Score=33.17 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=16.0
Q ss_pred CceEEEEEeccc----hhHHHHHHHhC
Q 037229 53 QVGIIGLYGMEG----WIQEQIRRKLG 75 (577)
Q Consensus 53 ~~~vv~I~G~gG----w~~~~i~~~l~ 75 (577)
....+.++|..| ++...|+..+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~ 142 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELM 142 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHh
Confidence 346688999888 56666666654
No 230
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=31.18 E-value=1.1e+02 Score=35.39 Aligned_cols=44 Identities=16% Similarity=0.250 Sum_probs=32.0
Q ss_pred CCccccHHHHHHHHHHhhcC-------C-CceEEEEEeccc----hhHHHHHHHhC
Q 037229 32 DLTVGLESTFDQVWSCLVEE-------E-QVGIIGLYGMEG----WIQEQIRRKLG 75 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~-------~-~~~vv~I~G~gG----w~~~~i~~~l~ 75 (577)
..++|.+..++.+.+.+... + ...++.++|..| .+.+.+++.+.
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~ 620 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLF 620 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 56899999999999988753 1 245788999999 25555555553
No 231
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=30.12 E-value=7.7e+02 Score=27.07 Aligned_cols=79 Identities=13% Similarity=0.009 Sum_probs=54.6
Q ss_pred CCccccHHHHHHHHHHhhcC-----------CCceEEEEEeccc----hhHHHHHHHhCCCcc---------hhccCCHH
Q 037229 32 DLTVGLESTFDQVWSCLVEE-----------EQVGIIGLYGMEG----WIQEQIRRKLGLVDD---------LWARKGLE 87 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~-----------~~~~vv~I~G~gG----w~~~~i~~~l~~~~~---------~~~~~~~~ 87 (577)
+++=|.+..+.++.+++..- .-.+=|-++|++| .+.+.|+.+++.+-- .....+.+
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESEk 269 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEK 269 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccHH
Confidence 67889999999988877542 2245567999999 388888888876531 11233444
Q ss_pred HHHHHHHHhcc-ccEEEEEecCCC
Q 037229 88 EKAMNIFGILS-KEFVLCWMMCGS 110 (577)
Q Consensus 88 ~~~~~l~~~L~-kr~LlVLDdv~~ 110 (577)
.+.+...+.-+ -.+++++|+++-
T Consensus 270 kiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 270 KIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred HHHHHHHHHhccCCeEEEeecccc
Confidence 44444444555 899999999974
No 232
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=30.10 E-value=2.7e+02 Score=27.72 Aligned_cols=91 Identities=7% Similarity=-0.028 Sum_probs=54.1
Q ss_pred cEEEEEecCCCh--hhhcccCCCCCCCCCCcEEEEEeCc-hhhhhcCCC-CceEecCCCCHHHHHHHHHHhhCCCCCCCC
Q 037229 100 EFVLCWMMCGSE--LILTQMGVPVPNPKRMSKVLFTTRF-VEVYGHKEA-DEMFRMECLRHEEAWKLFQMKVGKETMDDH 175 (577)
Q Consensus 100 r~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~-~~v~~~~~~-~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~ 175 (577)
+-++|+|++... ..-+.+...+-.-..++.+|++|.+ ..+.....+ ...+.+.+++.+++.+.+.... ..
T Consensus 114 ~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~--~~---- 187 (319)
T PRK08769 114 AQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG--VS---- 187 (319)
T ss_pred cEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC--CC----
Confidence 358999999764 2222222222222335666666664 444433332 4578899999999888776531 11
Q ss_pred CChhHHHHHHHHHcCCCchHHHHH
Q 037229 176 SDIPKLVEIVTKECGGLPLVLVTT 199 (577)
Q Consensus 176 ~~~~~~~~~i~~~c~glPLai~~~ 199 (577)
..-+..++..++|.|+....+
T Consensus 188 ---~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 188 ---ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred ---hHHHHHHHHHcCCCHHHHHHH
Confidence 223567789999999865433
No 233
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=29.46 E-value=3.2e+02 Score=23.94 Aligned_cols=102 Identities=13% Similarity=0.037 Sum_probs=55.6
Q ss_pred ccHHHHHHHHHHhhcCCCceEEEEEeccch----hHHHHHHHhCCCc--------------------ch-----hc----
Q 037229 36 GLESTFDQVWSCLVEEEQVGIIGLYGMEGW----IQEQIRRKLGLVD--------------------DL-----WA---- 82 (577)
Q Consensus 36 Gr~~~~~~i~~~L~~~~~~~vv~I~G~gGw----~~~~i~~~l~~~~--------------------~~-----~~---- 82 (577)
|-++..+.+.+.+..+.-...+-++|..|- +...++..+.... .+ ..
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 456667777777766434456778888871 2222222221111 00 01
Q ss_pred cCCHHHHHHHHHHhcc------ccEEEEEecCCCh--hhhcccCCCCCCCCCCcEEEEEeCchh
Q 037229 83 RKGLEEKAMNIFGILS------KEFVLCWMMCGSE--LILTQMGVPVPNPKRMSKVLFTTRFVE 138 (577)
Q Consensus 83 ~~~~~~~~~~l~~~L~------kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~~~ 138 (577)
....++.. .+.+.+. ++=.+|+||+... ..+..|...+-....++++|++|++.+
T Consensus 81 ~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 81 SIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp SBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred hhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChH
Confidence 23444444 5666555 2448999999764 446666555544456788888888765
No 234
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=27.71 E-value=25 Score=31.60 Aligned_cols=12 Identities=33% Similarity=0.396 Sum_probs=8.0
Q ss_pred CceEEEEEeccc
Q 037229 53 QVGIIGLYGMEG 64 (577)
Q Consensus 53 ~~~vv~I~G~gG 64 (577)
.-.-+.++|..|
T Consensus 46 ~~~~l~l~G~~G 57 (178)
T PF01695_consen 46 NGENLILYGPPG 57 (178)
T ss_dssp C--EEEEEESTT
T ss_pred cCeEEEEEhhHh
Confidence 345688899988
No 235
>CHL00095 clpC Clp protease ATP binding subunit
Probab=27.45 E-value=1.3e+02 Score=34.57 Aligned_cols=90 Identities=9% Similarity=0.078 Sum_probs=51.8
Q ss_pred CCccccHHHHHHHHHHhhcC--------CCceEEEEEeccc----hhHHHHHHHhCCCcchh---------ccCCHHHH-
Q 037229 32 DLTVGLESTFDQVWSCLVEE--------EQVGIIGLYGMEG----WIQEQIRRKLGLVDDLW---------ARKGLEEK- 89 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~--------~~~~vv~I~G~gG----w~~~~i~~~l~~~~~~~---------~~~~~~~~- 89 (577)
..++|-+..++.|.+.+... ....++-++|+.| .+.+.+++.+....... +..+...+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~ 588 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLI 588 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhc
Confidence 67899999999998887642 1234667899999 35556665553221100 00111111
Q ss_pred -----------HHHHHHhcc-ccE-EEEEecCCCh--hhhcccCCCC
Q 037229 90 -----------AMNIFGILS-KEF-VLCWMMCGSE--LILTQMGVPV 121 (577)
Q Consensus 90 -----------~~~l~~~L~-kr~-LlVLDdv~~~--~~~~~l~~~~ 121 (577)
...+.+.++ +.| ++++|++... +.++.+...+
T Consensus 589 g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~l 635 (821)
T CHL00095 589 GSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQIL 635 (821)
T ss_pred CCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHh
Confidence 124666777 554 8889999754 3344443333
No 236
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=26.19 E-value=40 Score=28.61 Aligned_cols=100 Identities=10% Similarity=0.044 Sum_probs=48.5
Q ss_pred cccHHHHHHHHHHhhcC-CCceEEEEEeccc----hhHHHHHHHhCCCcchhccCCHHHHHHHHHHhcc--ccEEEEEec
Q 037229 35 VGLESTFDQVWSCLVEE-EQVGIIGLYGMEG----WIQEQIRRKLGLVDDLWARKGLEEKAMNIFGILS--KEFVLCWMM 107 (577)
Q Consensus 35 vGr~~~~~~i~~~L~~~-~~~~vv~I~G~gG----w~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~--kr~LlVLDd 107 (577)
||....++++.+.+..- ..-.-|-|+|..| .+.+.|...-..........+..... .+.+. +.--|+++|
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~---~~~l~~a~~gtL~l~~ 77 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP---AELLEQAKGGTLYLKN 77 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC---HHHHHHCTTSEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc---HHHHHHcCCCEEEECC
Confidence 57777778887777654 3445567899998 12222222222111100111111111 22333 566688999
Q ss_pred CCCh--hhhcccCCCCC-CCCCCcEEEEEeCch
Q 037229 108 CGSE--LILTQMGVPVP-NPKRMSKVLFTTRFV 137 (577)
Q Consensus 108 v~~~--~~~~~l~~~~~-~~~~gsrIivTTR~~ 137 (577)
+... +....+...+. ......|+|.||+..
T Consensus 78 i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 78 IDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp GCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred hHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 9764 23333333332 124567999998743
No 237
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=26.02 E-value=4e+02 Score=26.61 Aligned_cols=90 Identities=10% Similarity=0.049 Sum_probs=55.4
Q ss_pred ccEEEEEecCCCh--hhhcccCCCCCCCCCCcEEEEEeCch-hhhhcCCC-CceEecCCCCHHHHHHHHHHhhCCCCCCC
Q 037229 99 KEFVLCWMMCGSE--LILTQMGVPVPNPKRMSKVLFTTRFV-EVYGHKEA-DEMFRMECLRHEEAWKLFQMKVGKETMDD 174 (577)
Q Consensus 99 kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~~-~v~~~~~~-~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~ 174 (577)
++=.+|+|++... ...+.+...+-.-..+..+|++|.+. .+.....+ ...+.+.+++.++..+.+.......
T Consensus 107 ~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~~~---- 182 (325)
T PRK06871 107 GNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSSAE---- 182 (325)
T ss_pred CceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhccC----
Confidence 3447889999764 33444444443334456666666654 45433332 4688999999999998887654211
Q ss_pred CCChhHHHHHHHHHcCCCchHH
Q 037229 175 HSDIPKLVEIVTKECGGLPLVL 196 (577)
Q Consensus 175 ~~~~~~~~~~i~~~c~glPLai 196 (577)
...+...+..++|.|...
T Consensus 183 ----~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 183 ----ISEILTALRINYGRPLLA 200 (325)
T ss_pred ----hHHHHHHHHHcCCCHHHH
Confidence 112455677899998633
No 238
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=25.23 E-value=3.6e+02 Score=27.15 Aligned_cols=87 Identities=15% Similarity=0.109 Sum_probs=54.0
Q ss_pred cEEEEEecCCCh--hhhcccCCCCCCCCCCcEEEEEeCc-hhhhhcCC-CCceEecCCCCHHHHHHHHHHhhCCCCCCCC
Q 037229 100 EFVLCWMMCGSE--LILTQMGVPVPNPKRMSKVLFTTRF-VEVYGHKE-ADEMFRMECLRHEEAWKLFQMKVGKETMDDH 175 (577)
Q Consensus 100 r~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~-~~v~~~~~-~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~ 175 (577)
+=.+|+|++... ...+.+...+-.-..++.+|.+|.+ ..+..... -...+.+.+++.++..+.+.... ..
T Consensus 133 ~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~--~~---- 206 (342)
T PRK06964 133 ARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG--VA---- 206 (342)
T ss_pred ceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC--CC----
Confidence 447889999764 4455555555444456666655555 54543332 24688999999999998887641 11
Q ss_pred CChhHHHHHHHHHcCCCchHHH
Q 037229 176 SDIPKLVEIVTKECGGLPLVLV 197 (577)
Q Consensus 176 ~~~~~~~~~i~~~c~glPLai~ 197 (577)
+ ....+..++|-|....
T Consensus 207 -~----~~~~l~~~~Gsp~~Al 223 (342)
T PRK06964 207 -D----ADALLAEAGGAPLAAL 223 (342)
T ss_pred -h----HHHHHHHcCCCHHHHH
Confidence 1 1235777899986443
No 239
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=25.16 E-value=1.2e+02 Score=24.80 Aligned_cols=54 Identities=20% Similarity=0.102 Sum_probs=30.1
Q ss_pred EEEEeccc----hhHHHHHHHhCCCcc-----hhc---cCCHHHHHHHHHHhcc--c-cEEEEEecCCC
Q 037229 57 IGLYGMEG----WIQEQIRRKLGLVDD-----LWA---RKGLEEKAMNIFGILS--K-EFVLCWMMCGS 110 (577)
Q Consensus 57 v~I~G~gG----w~~~~i~~~l~~~~~-----~~~---~~~~~~~~~~l~~~L~--k-r~LlVLDdv~~ 110 (577)
|-|+|..| .+.+.+++.++..-- ... ..+.......+.+..+ . +.+|++||+..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~ 69 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDK 69 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGG
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchh
Confidence 45788888 477777777754211 111 1122223333333333 4 79999999964
No 240
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=25.00 E-value=7.7e+02 Score=27.38 Aligned_cols=157 Identities=11% Similarity=0.006 Sum_probs=80.1
Q ss_pred CCccccHHHHHHHHHHhhcC-----------CCceEEEEEeccc----hhHHHHHHHhCCCcchhc---------cCCHH
Q 037229 32 DLTVGLESTFDQVWSCLVEE-----------EQVGIIGLYGMEG----WIQEQIRRKLGLVDDLWA---------RKGLE 87 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~-----------~~~~vv~I~G~gG----w~~~~i~~~l~~~~~~~~---------~~~~~ 87 (577)
.++.|.+..++++.+.+... .-.+-|.++|..| .+.+.++.+++...-... .....
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~ 231 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGAS 231 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHH
Confidence 45678887777666544321 1123488999999 366666666654321000 11112
Q ss_pred HHHHHHHHhcc-ccEEEEEecCCChh------------h----hcccCCCCCC--CCCCcEEEEEeCchhhhhc--C---
Q 037229 88 EKAMNIFGILS-KEFVLCWMMCGSEL------------I----LTQMGVPVPN--PKRMSKVLFTTRFVEVYGH--K--- 143 (577)
Q Consensus 88 ~~~~~l~~~L~-kr~LlVLDdv~~~~------------~----~~~l~~~~~~--~~~gsrIivTTR~~~v~~~--~--- 143 (577)
.....+...-. ...+|++|+++... . ...+...+.. ...+.-+|.||...+.... .
T Consensus 232 ~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~Rpg 311 (644)
T PRK10733 232 RVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPG 311 (644)
T ss_pred HHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCc
Confidence 22222222223 67899999986531 1 1111111111 1234445557766654321 1
Q ss_pred CCCceEecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCC
Q 037229 144 EADEMFRMECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGL 192 (577)
Q Consensus 144 ~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~gl 192 (577)
.-+..+.+...+.++-.+++..+..........++ ..+++.+.|+
T Consensus 312 Rfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~----~~la~~t~G~ 356 (644)
T PRK10733 312 RFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDA----AIIARGTPGF 356 (644)
T ss_pred ccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCH----HHHHhhCCCC
Confidence 23467778888888888888877644321122222 2355566664
No 241
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=24.91 E-value=6.6e+02 Score=24.56 Aligned_cols=92 Identities=9% Similarity=0.046 Sum_probs=52.8
Q ss_pred EEEEecCCCh--hhhcccCCCCCCCCCCcEEEEEeCch-hhhhcCCC-CceEecCCCCHHHHHHHHHHhhCCCCCCCCCC
Q 037229 102 VLCWMMCGSE--LILTQMGVPVPNPKRMSKVLFTTRFV-EVYGHKEA-DEMFRMECLRHEEAWKLFQMKVGKETMDDHSD 177 (577)
Q Consensus 102 LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~~-~v~~~~~~-~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~ 177 (577)
++|+-.+++. +.-..++...-.-...+|+|+..-+. .+-..... .-.+++..-+++|.-..+++.+-.....-+
T Consensus 130 vvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp-- 207 (351)
T KOG2035|consen 130 VVVINEADELTRDAQHALRRTMEKYSSNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP-- 207 (351)
T ss_pred EEEEechHhhhHHHHHHHHHHHHHHhcCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--
Confidence 4555555442 33344433332223345665543221 11111122 235788889999999999988866553232
Q ss_pred hhHHHHHHHHHcCCC-chHH
Q 037229 178 IPKLVEIVTKECGGL-PLVL 196 (577)
Q Consensus 178 ~~~~~~~i~~~c~gl-PLai 196 (577)
++++++|+++++|. --|+
T Consensus 208 -~~~l~rIa~kS~~nLRrAl 226 (351)
T KOG2035|consen 208 -KELLKRIAEKSNRNLRRAL 226 (351)
T ss_pred -HHHHHHHHHHhcccHHHHH
Confidence 78999999998875 4444
No 242
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=24.51 E-value=1.7e+02 Score=29.60 Aligned_cols=39 Identities=8% Similarity=0.019 Sum_probs=25.1
Q ss_pred cEEEEEecCCChhhhcccCCCCCCCCCCcEEEEEeCchhh
Q 037229 100 EFVLCWMMCGSELILTQMGVPVPNPKRMSKVLFTTRFVEV 139 (577)
Q Consensus 100 r~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIivTTR~~~v 139 (577)
+-++++|..-+... .+++.-+...+.||||+.|---.++
T Consensus 352 ~~FiIIDEaQNLTp-heikTiltR~G~GsKIVl~gd~aQi 390 (436)
T COG1875 352 DSFIIIDEAQNLTP-HELKTILTRAGEGSKIVLTGDPAQI 390 (436)
T ss_pred cceEEEehhhccCH-HHHHHHHHhccCCCEEEEcCCHHHc
Confidence 56899998865421 2333344556889999988754444
No 243
>PRK04132 replication factor C small subunit; Provisional
Probab=24.49 E-value=5.8e+02 Score=29.33 Aligned_cols=112 Identities=9% Similarity=0.048 Sum_probs=67.2
Q ss_pred CHHHHHHHHHHhcc-c------cEEEEEecCCCh--hhhcccCCCCCCCCCCcEEEEEeCc-hhhhhcCC-CCceEecCC
Q 037229 85 GLEEKAMNIFGILS-K------EFVLCWMMCGSE--LILTQMGVPVPNPKRMSKVLFTTRF-VEVYGHKE-ADEMFRMEC 153 (577)
Q Consensus 85 ~~~~~~~~l~~~L~-k------r~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~-~~v~~~~~-~~~~~~l~~ 153 (577)
..+.+.+.+.+... + .-++|+|++... .+.+.|...+-......++|.+|.+ ..+..... -...+.+.+
T Consensus 609 gid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ 688 (846)
T PRK04132 609 GINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRP 688 (846)
T ss_pred cHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCC
Confidence 35555555555432 2 369999999865 3556665555433345566555544 44433322 246899999
Q ss_pred CCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCch-HHHHH
Q 037229 154 LRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLPL-VLVTT 199 (577)
Q Consensus 154 L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~ 199 (577)
++.++..+.+...+....... -++....|++.|+|-+- |+..+
T Consensus 689 ls~~~i~~~L~~I~~~Egi~i---~~e~L~~Ia~~s~GDlR~AIn~L 732 (846)
T PRK04132 689 LRDEDIAKRLRYIAENEGLEL---TEEGLQAILYIAEGDMRRAINIL 732 (846)
T ss_pred CCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 999988887776654322111 14567789999999763 44333
No 244
>PRK06696 uridine kinase; Validated
Probab=23.04 E-value=2.4e+02 Score=26.16 Aligned_cols=29 Identities=3% Similarity=0.074 Sum_probs=23.3
Q ss_pred ccHHHHHHHHHHhhcC--CCceEEEEEeccc
Q 037229 36 GLESTFDQVWSCLVEE--EQVGIIGLYGMEG 64 (577)
Q Consensus 36 Gr~~~~~~i~~~L~~~--~~~~vv~I~G~gG 64 (577)
.|++.+++|.+.+... +...+|+|.|..|
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sg 32 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITA 32 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCC
Confidence 4677788888888753 6788999999888
No 245
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=22.12 E-value=4.4e+02 Score=22.90 Aligned_cols=25 Identities=8% Similarity=0.173 Sum_probs=16.4
Q ss_pred HHHHHHHHhhcCCCceEEEEEeccc
Q 037229 40 TFDQVWSCLVEEEQVGIIGLYGMEG 64 (577)
Q Consensus 40 ~~~~i~~~L~~~~~~~vv~I~G~gG 64 (577)
.++++.+.+..+.+.+.|.++|+||
T Consensus 6 ~i~~~~~~i~~~~~~~~iv~~GiGG 30 (158)
T cd05015 6 RIKEFAEKVRSGKKITDVVVIGIGG 30 (158)
T ss_pred HHHHHHHHHhcCCCCCEEEEEecCc
Confidence 3444555554423578889999999
No 246
>PRK09183 transposase/IS protein; Provisional
Probab=22.10 E-value=1.1e+02 Score=29.28 Aligned_cols=12 Identities=17% Similarity=-0.069 Sum_probs=9.4
Q ss_pred ccEEEEEecCCC
Q 037229 99 KEFVLCWMMCGS 110 (577)
Q Consensus 99 kr~LlVLDdv~~ 110 (577)
+.-++|+||+..
T Consensus 164 ~~dlLiiDdlg~ 175 (259)
T PRK09183 164 APRLLIIDEIGY 175 (259)
T ss_pred CCCEEEEccccc
Confidence 445999999974
No 247
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=21.85 E-value=2.1e+02 Score=29.21 Aligned_cols=59 Identities=17% Similarity=0.187 Sum_probs=37.0
Q ss_pred CCceEEEEEeccc----hhHHHHHHHhCCCcchh--------ccCCHHHHHHHHHH----hc--c-ccEEEEEecCCC
Q 037229 52 EQVGIIGLYGMEG----WIQEQIRRKLGLVDDLW--------ARKGLEEKAMNIFG----IL--S-KEFVLCWMMCGS 110 (577)
Q Consensus 52 ~~~~vv~I~G~gG----w~~~~i~~~l~~~~~~~--------~~~~~~~~~~~l~~----~L--~-kr~LlVLDdv~~ 110 (577)
.-...++|||..| ++.+.|+.+++...-.. -....+...+.+.+ .. + +.+.|++||++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA 223 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDA 223 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhh
Confidence 5578999999999 58888888887653100 11122233333332 11 3 589999999963
No 248
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=21.16 E-value=2.8e+02 Score=29.69 Aligned_cols=79 Identities=9% Similarity=0.068 Sum_probs=50.9
Q ss_pred CCccccHHHH---HHHHHHhhcC--------CCceEEEEEeccc----hhHHHHHHHhCCCcc-----hhccCCHHHHHH
Q 037229 32 DLTVGLESTF---DQVWSCLVEE--------EQVGIIGLYGMEG----WIQEQIRRKLGLVDD-----LWARKGLEEKAM 91 (577)
Q Consensus 32 ~~~vGr~~~~---~~i~~~L~~~--------~~~~vv~I~G~gG----w~~~~i~~~l~~~~~-----~~~~~~~~~~~~ 91 (577)
+++-|.|+.+ ++|+++|.+. .-.+=|-++|++| -+.+.++...+.+.. +.+..=.....+
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VGvGAr 383 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVGVGAR 383 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhcccHH
Confidence 6778987765 5667777764 2246677899999 266777766655422 122333334456
Q ss_pred HHHHhcc-----ccEEEEEecCCC
Q 037229 92 NIFGILS-----KEFVLCWMMCGS 110 (577)
Q Consensus 92 ~l~~~L~-----kr~LlVLDdv~~ 110 (577)
++|+..+ -.+.|.+|.++.
T Consensus 384 RVRdLF~aAk~~APcIIFIDEiDa 407 (752)
T KOG0734|consen 384 RVRDLFAAAKARAPCIIFIDEIDA 407 (752)
T ss_pred HHHHHHHHHHhcCCeEEEEechhh
Confidence 6666665 468999999875
Done!