Query 037229
Match_columns 577
No_of_seqs 369 out of 3045
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 17:02:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037229.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037229hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 4.4E-29 1.5E-33 267.0 18.6 221 35-266 131-473 (549)
2 3sfz_A APAF-1, apoptotic pepti 99.9 1.5E-22 5.1E-27 238.7 22.1 221 31-264 123-452 (1249)
3 4fcg_A Uncharacterized protein 99.9 3.9E-22 1.3E-26 199.5 18.1 217 297-555 80-310 (328)
4 4fcg_A Uncharacterized protein 99.9 7.1E-22 2.4E-26 197.6 17.8 218 320-570 79-301 (328)
5 3o6n_A APL1; leucine-rich repe 99.9 4.1E-21 1.4E-25 197.2 20.1 126 278-405 47-176 (390)
6 4fmz_A Internalin; leucine ric 99.9 9.4E-21 3.2E-25 191.3 21.3 258 278-562 46-326 (347)
7 2id5_A Lingo-1, leucine rich r 99.9 1.6E-20 5.4E-25 198.3 22.1 256 278-564 34-313 (477)
8 1xku_A Decorin; proteoglycan, 99.8 9E-20 3.1E-24 182.7 23.0 241 278-564 33-280 (330)
9 3oja_B Anopheles plasmodium-re 99.8 2.5E-20 8.5E-25 202.1 19.4 269 278-564 53-341 (597)
10 1vt4_I APAF-1 related killer D 99.8 4.2E-21 1.4E-25 209.0 12.4 208 33-257 129-436 (1221)
11 4fmz_A Internalin; leucine ric 99.8 8.7E-20 3E-24 184.2 21.4 257 277-557 67-344 (347)
12 1ogq_A PGIP-2, polygalacturona 99.8 7.7E-21 2.6E-25 188.9 13.3 245 277-565 51-310 (313)
13 1o6v_A Internalin A; bacterial 99.8 1.2E-19 4E-24 190.9 22.5 250 278-556 48-319 (466)
14 3bz5_A Internalin-J, INLJ; leu 99.8 9.3E-20 3.2E-24 190.4 21.0 143 277-447 43-185 (457)
15 2z66_A Variable lymphocyte rec 99.8 4.8E-20 1.6E-24 182.7 17.7 237 279-557 10-259 (306)
16 3o6n_A APL1; leucine-rich repe 99.8 1.2E-19 4.2E-24 186.2 20.1 252 278-563 71-334 (390)
17 2ft3_A Biglycan; proteoglycan, 99.8 1.5E-19 5.1E-24 181.3 18.9 248 278-558 35-306 (332)
18 3oja_B Anopheles plasmodium-re 99.8 1.4E-19 4.8E-24 196.2 19.9 258 278-557 77-356 (597)
19 3zyi_A Leucine-rich repeat-con 99.8 2.4E-19 8.2E-24 187.7 20.8 237 278-557 56-301 (452)
20 3zyj_A Leucine-rich repeat-con 99.8 2.9E-19 9.9E-24 186.4 21.1 237 278-557 45-290 (440)
21 2z81_A CD282 antigen, TOLL-lik 99.8 4.2E-20 1.4E-24 198.6 15.0 129 276-405 26-159 (549)
22 3v47_A TOLL-like receptor 5B a 99.8 1.7E-19 5.8E-24 189.2 18.8 127 277-405 31-165 (455)
23 4ecn_A Leucine-rich repeat pro 99.8 4.8E-19 1.7E-23 197.0 22.1 267 277-567 449-826 (876)
24 2id5_A Lingo-1, leucine rich r 99.8 3.4E-19 1.2E-23 188.0 19.5 246 279-556 14-282 (477)
25 2z80_A TOLL-like receptor 2, v 99.8 1.3E-19 4.4E-24 183.4 14.5 247 281-557 36-312 (353)
26 1o6v_A Internalin A; bacterial 99.8 8.2E-19 2.8E-23 184.4 21.1 253 277-557 69-364 (466)
27 3v47_A TOLL-like receptor 5B a 99.8 1E-18 3.6E-23 183.1 21.7 148 279-444 13-166 (455)
28 3vq2_A TLR4, TOLL-like recepto 99.8 4E-19 1.4E-23 193.4 19.1 272 277-556 33-386 (606)
29 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1.1E-18 3.7E-23 188.0 20.7 122 429-565 350-491 (562)
30 4eco_A Uncharacterized protein 99.8 8.6E-19 2.9E-23 191.2 20.1 282 277-567 207-586 (636)
31 1z6t_A APAF-1, apoptotic prote 99.8 8.1E-19 2.8E-23 190.2 19.6 164 31-206 123-334 (591)
32 3t6q_A CD180 antigen; protein- 99.8 1.5E-18 5.1E-23 188.8 20.9 258 278-556 35-360 (606)
33 2z7x_B TOLL-like receptor 1, v 99.8 4.1E-18 1.4E-22 181.8 23.9 121 279-405 3-126 (520)
34 3bz5_A Internalin-J, INLJ; leu 99.8 2E-18 6.7E-23 180.4 20.7 117 277-405 65-181 (457)
35 3j0a_A TOLL-like receptor 5; m 99.8 3.6E-18 1.2E-22 192.6 23.0 128 276-405 24-159 (844)
36 2z80_A TOLL-like receptor 2, v 99.8 1.2E-18 4E-23 176.4 16.1 227 295-566 28-296 (353)
37 2z7x_B TOLL-like receptor 1, v 99.8 4.5E-18 1.5E-22 181.5 20.6 124 276-406 21-150 (520)
38 1ogq_A PGIP-2, polygalacturona 99.8 5.8E-19 2E-23 175.3 11.9 227 298-565 50-287 (313)
39 1ziw_A TOLL-like receptor 3; i 99.8 2.2E-18 7.5E-23 190.1 17.4 261 278-556 27-339 (680)
40 4ecn_A Leucine-rich repeat pro 99.8 5.1E-18 1.8E-22 188.8 20.0 244 278-557 550-838 (876)
41 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1.3E-17 4.5E-22 179.5 22.4 122 278-405 33-157 (562)
42 2ft3_A Biglycan; proteoglycan, 99.8 3.4E-18 1.2E-22 171.3 16.6 252 277-557 55-331 (332)
43 3t6q_A CD180 antigen; protein- 99.8 1E-17 3.5E-22 182.3 21.5 148 278-443 256-411 (606)
44 2z63_A TOLL-like receptor 4, v 99.8 5.1E-18 1.8E-22 183.2 18.7 127 277-406 29-161 (570)
45 3j0a_A TOLL-like receptor 5; m 99.8 1.8E-17 6.1E-22 186.9 23.6 150 279-444 7-160 (844)
46 1ozn_A Reticulon 4 receptor; N 99.8 6.4E-18 2.2E-22 165.5 17.4 215 278-533 13-236 (285)
47 3zyj_A Leucine-rich repeat-con 99.8 4.4E-18 1.5E-22 177.5 17.1 216 277-533 65-290 (440)
48 3zyi_A Leucine-rich repeat-con 99.8 1.3E-17 4.3E-22 174.6 20.7 224 299-566 55-285 (452)
49 3rgz_A Protein brassinosteroid 99.8 4.3E-18 1.5E-22 189.9 18.1 258 278-564 396-722 (768)
50 3vq2_A TLR4, TOLL-like recepto 99.8 3.6E-18 1.2E-22 185.8 16.9 242 278-559 287-558 (606)
51 3g06_A SSPH2 (leucine-rich rep 99.8 1.6E-17 5.5E-22 178.9 20.9 242 278-557 42-295 (622)
52 4eco_A Uncharacterized protein 99.8 3.5E-18 1.2E-22 186.4 15.6 250 278-563 307-603 (636)
53 2z63_A TOLL-like receptor 4, v 99.8 1.2E-17 4.2E-22 180.2 19.8 128 276-405 52-188 (570)
54 2z66_A Variable lymphocyte rec 99.8 3.8E-18 1.3E-22 168.9 14.5 216 277-533 29-259 (306)
55 1xku_A Decorin; proteoglycan, 99.8 2.4E-17 8.1E-22 165.1 20.2 233 277-557 53-304 (330)
56 1ozn_A Reticulon 4 receptor; N 99.8 3.9E-18 1.3E-22 167.0 13.2 200 277-515 33-238 (285)
57 3rgz_A Protein brassinosteroid 99.8 8.1E-18 2.8E-22 187.7 17.4 125 278-405 180-329 (768)
58 3oja_A Leucine-rich immune mol 99.7 5.4E-18 1.9E-22 178.6 13.6 213 296-557 32-248 (487)
59 3o53_A Protein LRIM1, AGAP0063 99.7 4.8E-18 1.6E-22 169.1 12.4 118 278-405 36-155 (317)
60 1h6u_A Internalin H; cell adhe 99.7 2.1E-17 7.1E-22 163.6 16.8 187 278-514 43-229 (308)
61 1h6u_A Internalin H; cell adhe 99.7 1.7E-17 5.7E-22 164.3 15.1 198 288-537 31-231 (308)
62 2o6q_A Variable lymphocyte rec 99.7 5.1E-17 1.7E-21 157.7 18.2 195 278-513 18-216 (270)
63 1ziw_A TOLL-like receptor 3; i 99.7 4.6E-17 1.6E-21 179.5 19.3 259 279-556 7-306 (680)
64 2z81_A CD282 antigen, TOLL-lik 99.7 4.5E-17 1.6E-21 174.9 18.5 127 276-405 50-183 (549)
65 1p9a_G Platelet glycoprotein I 99.7 5.3E-17 1.8E-21 159.1 16.3 195 278-514 12-207 (290)
66 4g8a_A TOLL-like receptor 4; l 99.7 9.1E-17 3.1E-21 175.5 19.5 125 278-405 54-184 (635)
67 3o53_A Protein LRIM1, AGAP0063 99.7 1.9E-18 6.6E-23 171.9 4.3 214 295-557 31-248 (317)
68 3rfs_A Internalin B, repeat mo 99.7 4.6E-17 1.6E-21 158.1 13.0 203 295-543 38-243 (272)
69 2o6q_A Variable lymphocyte rec 99.7 2.7E-16 9.1E-21 152.6 18.1 192 298-533 16-216 (270)
70 2xwt_C Thyrotropin receptor; s 99.7 1E-16 3.6E-21 152.5 14.5 193 323-559 32-239 (239)
71 1p9a_G Platelet glycoprotein I 99.7 2.7E-16 9.2E-21 154.1 17.2 193 295-533 7-206 (290)
72 3rfs_A Internalin B, repeat mo 99.7 1E-16 3.4E-21 155.8 13.9 196 278-520 43-240 (272)
73 1jl5_A Outer protein YOPM; leu 99.7 1.3E-15 4.5E-20 158.8 23.1 260 278-563 93-373 (454)
74 2z62_A TOLL-like receptor 4, v 99.7 2E-16 7E-21 154.0 15.6 132 298-444 28-161 (276)
75 1jl5_A Outer protein YOPM; leu 99.7 1E-15 3.5E-20 159.6 21.2 244 278-557 133-407 (454)
76 2xwt_C Thyrotropin receptor; s 99.7 2.7E-16 9.1E-21 149.7 14.9 205 287-534 22-238 (239)
77 3oja_A Leucine-rich immune mol 99.7 2.4E-17 8.1E-22 173.7 7.7 227 277-554 35-270 (487)
78 1h6t_A Internalin B; cell adhe 99.7 1.7E-16 5.7E-21 155.7 12.6 174 291-514 39-212 (291)
79 2z62_A TOLL-like receptor 4, v 99.7 3.5E-16 1.2E-20 152.3 14.6 194 278-513 30-235 (276)
80 4g8a_A TOLL-like receptor 4; l 99.7 1.4E-15 4.8E-20 166.1 20.2 121 282-405 37-159 (635)
81 1wwl_A Monocyte differentiatio 99.7 1.9E-17 6.4E-22 164.4 4.5 199 320-556 93-306 (312)
82 3g06_A SSPH2 (leucine-rich rep 99.7 2.1E-15 7E-20 162.4 20.7 224 298-565 40-279 (622)
83 1m9s_A Internalin B; cell inva 99.6 5.3E-16 1.8E-20 166.8 12.8 179 288-516 33-211 (605)
84 4ay9_X Follicle-stimulating ho 99.6 3.6E-15 1.2E-19 150.4 15.6 234 280-555 13-255 (350)
85 1wwl_A Monocyte differentiatio 99.6 1.2E-15 4.2E-20 151.2 11.6 197 296-532 93-306 (312)
86 3m19_A Variable lymphocyte rec 99.6 5.7E-15 2E-19 141.5 15.7 172 278-477 16-189 (251)
87 4ay9_X Follicle-stimulating ho 99.6 8.8E-15 3E-19 147.5 17.7 221 300-564 11-241 (350)
88 1h6t_A Internalin B; cell adhe 99.6 8.4E-15 2.9E-19 143.5 15.0 164 278-478 48-211 (291)
89 3m19_A Variable lymphocyte rec 99.6 1.3E-14 4.5E-19 138.9 15.8 175 298-515 14-192 (251)
90 4glp_A Monocyte differentiatio 99.6 9.8E-15 3.3E-19 144.6 12.3 194 278-514 93-306 (310)
91 2ca6_A RAN GTPase-activating p 99.6 1.1E-15 3.6E-20 156.5 4.3 233 295-556 29-313 (386)
92 2ast_B S-phase kinase-associat 99.5 2.7E-15 9.1E-20 150.5 6.4 104 298-404 70-178 (336)
93 1m9s_A Internalin B; cell inva 99.5 2E-14 6.9E-19 154.5 13.0 164 278-478 45-208 (605)
94 4ezg_A Putative uncharacterize 99.5 2.9E-14 9.8E-19 131.2 12.3 145 278-443 46-192 (197)
95 1xeu_A Internalin C; cellular 99.5 5.1E-15 1.8E-19 142.7 7.2 114 283-405 26-139 (263)
96 2ast_B S-phase kinase-associat 99.5 1.6E-15 5.4E-20 152.1 3.3 125 299-442 48-178 (336)
97 4ezg_A Putative uncharacterize 99.5 1.8E-14 6E-19 132.6 9.8 105 295-405 41-147 (197)
98 2v9t_B SLIT homolog 2 protein 99.5 4.8E-14 1.6E-18 132.0 12.4 148 279-443 14-163 (220)
99 3cvr_A Invasion plasmid antige 99.5 1.7E-13 5.9E-18 145.7 15.5 186 278-519 61-247 (571)
100 1xeu_A Internalin C; cellular 99.5 6.6E-14 2.2E-18 134.9 11.2 146 276-446 41-186 (263)
101 3e6j_A Variable lymphocyte rec 99.5 1.5E-13 5E-18 129.6 13.1 147 279-443 22-170 (229)
102 2v70_A SLIT-2, SLIT homolog 2 99.5 1.3E-13 4.4E-18 129.1 11.9 148 279-443 14-164 (220)
103 3cvr_A Invasion plasmid antige 99.5 3.5E-13 1.2E-17 143.3 15.9 178 298-539 59-247 (571)
104 2o6s_A Variable lymphocyte rec 99.5 4.2E-13 1.5E-17 124.5 13.5 146 280-442 11-158 (208)
105 4glp_A Monocyte differentiatio 99.5 9.4E-14 3.2E-18 137.5 9.6 201 321-557 90-305 (310)
106 2o6s_A Variable lymphocyte rec 99.5 2.2E-13 7.6E-18 126.4 11.5 170 301-518 10-181 (208)
107 2v9t_B SLIT homolog 2 protein 99.5 3.4E-13 1.2E-17 126.2 12.5 148 300-477 13-162 (220)
108 3e6j_A Variable lymphocyte rec 99.4 3.7E-13 1.3E-17 126.8 12.1 127 277-405 41-170 (229)
109 2ca6_A RAN GTPase-activating p 99.4 3.4E-14 1.2E-18 145.3 5.1 227 278-533 34-314 (386)
110 3goz_A Leucine-rich repeat-con 99.4 1.5E-14 5.3E-19 146.4 2.2 106 298-405 22-149 (362)
111 2xot_A Amphoterin-induced prot 99.4 4.9E-13 1.7E-17 135.3 11.3 123 280-405 22-147 (361)
112 1z7x_W Ribonuclease inhibitor; 99.4 2.4E-14 8.3E-19 150.0 0.9 125 278-405 30-181 (461)
113 1z7x_W Ribonuclease inhibitor; 99.4 2E-14 6.7E-19 150.8 -0.3 154 278-444 5-182 (461)
114 2ell_A Acidic leucine-rich nuc 99.4 4.4E-13 1.5E-17 119.8 8.5 124 278-405 26-158 (168)
115 2v70_A SLIT-2, SLIT homolog 2 99.4 1.2E-12 4.3E-17 122.4 11.3 126 278-405 34-164 (220)
116 2je0_A Acidic leucine-rich nuc 99.4 8.8E-13 3E-17 115.2 8.9 121 278-402 19-148 (149)
117 2ell_A Acidic leucine-rich nuc 99.4 1.2E-12 4E-17 117.0 9.9 136 296-449 22-164 (168)
118 3ogk_B Coronatine-insensitive 99.4 2E-13 6.8E-18 147.8 4.5 35 522-556 436-473 (592)
119 2xot_A Amphoterin-induced prot 99.4 2.8E-12 9.6E-17 129.6 12.3 150 278-443 41-200 (361)
120 2je0_A Acidic leucine-rich nuc 99.4 5.4E-13 1.9E-17 116.6 6.1 126 296-440 15-148 (149)
121 1a9n_A U2A', U2A'; complex (nu 99.4 2.5E-12 8.7E-17 115.7 10.7 127 275-405 18-151 (176)
122 3goz_A Leucine-rich repeat-con 99.3 5.1E-13 1.8E-17 135.2 5.3 131 303-445 3-151 (362)
123 1a9n_A U2A', U2A'; complex (nu 99.3 1E-12 3.5E-17 118.4 6.7 133 292-444 13-152 (176)
124 3ogk_B Coronatine-insensitive 99.3 6.2E-13 2.1E-17 144.0 6.2 59 501-561 462-527 (592)
125 2wfh_A SLIT homolog 2 protein 99.3 7.8E-12 2.7E-16 114.3 12.1 122 280-405 14-137 (193)
126 2o6r_A Variable lymphocyte rec 99.3 9.4E-12 3.2E-16 112.1 12.4 124 279-405 10-135 (177)
127 1w8a_A SLIT protein; signaling 99.3 3.9E-12 1.3E-16 116.2 9.5 124 279-405 11-137 (192)
128 2wfh_A SLIT homolog 2 protein 99.3 7.8E-12 2.7E-16 114.3 11.3 125 300-443 12-137 (193)
129 1w8a_A SLIT protein; signaling 99.3 6.5E-12 2.2E-16 114.8 10.6 127 300-445 10-139 (192)
130 4b8c_D Glucose-repressible alc 99.3 3.6E-12 1.2E-16 140.4 7.5 107 295-405 221-327 (727)
131 1dce_A Protein (RAB geranylger 99.3 1.5E-11 5.1E-16 131.4 11.3 100 300-405 443-544 (567)
132 4b8c_D Glucose-repressible alc 99.2 1.1E-11 3.7E-16 136.6 8.5 100 278-379 226-326 (727)
133 1dce_A Protein (RAB geranylger 99.2 2.9E-11 9.8E-16 129.2 11.0 120 278-401 443-567 (567)
134 2p1m_B Transport inhibitor res 99.2 6.5E-12 2.2E-16 136.0 4.9 126 278-405 158-325 (594)
135 2p1m_B Transport inhibitor res 99.2 6.1E-13 2.1E-17 144.0 -3.3 106 296-403 128-244 (594)
136 2o6r_A Variable lymphocyte rec 99.2 1.3E-10 4.3E-15 104.6 11.4 126 299-443 8-135 (177)
137 1ds9_A Outer arm dynein; leuci 99.1 2E-12 7E-17 118.8 -2.0 106 295-405 45-151 (198)
138 2r9u_A Variable lymphocyte rec 99.1 1.4E-10 4.8E-15 103.9 9.8 101 300-405 14-116 (174)
139 3g39_A Variable lymphocyte rec 99.1 1.7E-10 6E-15 102.9 9.8 102 299-405 10-113 (170)
140 2r9u_A Variable lymphocyte rec 99.1 3.1E-10 1E-14 101.7 10.4 106 279-387 15-122 (174)
141 3g39_A Variable lymphocyte rec 99.0 1.2E-09 4E-14 97.5 11.2 101 278-380 11-113 (170)
142 1ds9_A Outer arm dynein; leuci 99.0 1.3E-11 4.5E-16 113.4 -1.7 127 299-444 24-152 (198)
143 2ifg_A High affinity nerve gro 98.8 1.6E-08 5.5E-13 101.4 9.2 98 303-405 13-114 (347)
144 3sb4_A Hypothetical leucine ri 98.7 1.6E-08 5.6E-13 100.5 8.7 56 297-354 100-156 (329)
145 3sb4_A Hypothetical leucine ri 98.7 2.9E-08 1E-12 98.7 10.2 53 345-399 100-153 (329)
146 2ifg_A High affinity nerve gro 98.7 4.3E-08 1.5E-12 98.2 10.2 102 280-383 12-116 (347)
147 4fdw_A Leucine rich hypothetic 98.7 6.1E-07 2.1E-11 91.4 18.1 217 299-563 136-361 (401)
148 4fdw_A Leucine rich hypothetic 98.6 1.1E-06 3.9E-11 89.3 19.2 212 278-532 137-355 (401)
149 2qen_A Walker-type ATPase; unk 98.4 2.2E-06 7.7E-11 85.5 13.8 165 32-203 12-249 (350)
150 3un9_A NLR family member X1; l 98.4 4.2E-08 1.4E-12 99.0 -0.3 125 278-405 74-222 (372)
151 2fna_A Conserved hypothetical 98.3 1.6E-06 5.6E-11 86.8 10.9 102 99-205 137-255 (357)
152 3un9_A NLR family member X1; l 98.3 1.5E-07 5.1E-12 94.9 1.8 162 297-478 71-250 (372)
153 1njg_A DNA polymerase III subu 98.3 6.6E-06 2.3E-10 77.3 12.9 168 32-203 23-231 (250)
154 1w5s_A Origin recognition comp 98.2 6E-06 2E-10 84.5 12.0 164 32-200 22-266 (412)
155 2ra8_A Uncharacterized protein 98.1 3.3E-06 1.1E-10 84.4 6.9 60 465-533 250-318 (362)
156 2ra8_A Uncharacterized protein 97.9 7.6E-06 2.6E-10 81.8 4.9 38 318-358 168-205 (362)
157 3e4g_A ATP synthase subunit S, 97.9 1.3E-05 4.5E-10 70.4 5.1 92 312-405 52-150 (176)
158 3e4g_A ATP synthase subunit S, 97.8 1.5E-05 5.3E-10 70.0 5.2 90 296-385 59-155 (176)
159 1io0_A Tropomodulin; LRR prote 97.8 1.6E-05 5.5E-10 71.4 5.1 108 295-405 33-162 (185)
160 2chg_A Replication factor C sm 97.8 0.00012 4E-09 67.5 11.2 167 32-202 17-206 (226)
161 3rw6_A Nuclear RNA export fact 97.7 3.7E-05 1.3E-09 72.9 6.7 84 319-404 167-261 (267)
162 2qby_A CDC6 homolog 1, cell di 97.7 0.00012 4.3E-09 73.8 10.5 165 32-197 20-242 (386)
163 4gt6_A Cell surface protein; l 97.6 0.0017 6E-08 65.6 17.9 67 497-567 306-388 (394)
164 1sxj_B Activator 1 37 kDa subu 97.6 0.00031 1.1E-08 68.9 11.1 165 32-200 21-210 (323)
165 1io0_A Tropomodulin; LRR prote 97.6 3.3E-05 1.1E-09 69.4 3.4 116 317-444 31-163 (185)
166 4fs7_A Uncharacterized protein 97.6 0.00082 2.8E-08 68.1 14.2 104 295-404 159-263 (394)
167 2qby_B CDC6 homolog 3, cell di 97.6 0.00094 3.2E-08 67.3 14.5 161 32-200 20-246 (384)
168 2v1u_A Cell division control p 97.5 0.0013 4.3E-08 66.3 13.9 158 32-194 19-243 (387)
169 3rw6_A Nuclear RNA export fact 97.4 0.00013 4.3E-09 69.2 5.4 80 296-377 168-259 (267)
170 1fnn_A CDC6P, cell division co 97.3 0.0025 8.7E-08 64.1 14.3 164 32-197 17-244 (389)
171 4fs7_A Uncharacterized protein 97.1 0.0026 8.9E-08 64.4 12.0 120 278-404 164-286 (394)
172 4h09_A Hypothetical leucine ri 96.7 0.083 2.8E-06 52.7 19.1 53 498-553 282-340 (379)
173 1iqp_A RFCS; clamp loader, ext 96.7 0.0044 1.5E-07 60.7 9.1 167 32-202 25-214 (327)
174 1jr3_A DNA polymerase III subu 96.6 0.017 5.8E-07 57.6 13.1 166 32-200 16-221 (373)
175 2chq_A Replication factor C sm 96.4 0.028 9.6E-07 54.6 12.4 164 32-199 17-203 (319)
176 4gt6_A Cell surface protein; l 96.3 0.015 5.2E-07 58.6 10.0 104 295-404 262-367 (394)
177 1hqc_A RUVB; extended AAA-ATPa 96.1 0.047 1.6E-06 53.2 12.3 169 32-203 12-214 (324)
178 3h4m_A Proteasome-activating n 95.7 0.055 1.9E-06 51.7 10.7 157 32-192 17-222 (285)
179 4h09_A Hypothetical leucine ri 95.1 0.032 1.1E-06 55.8 7.1 104 295-403 214-319 (379)
180 3rfe_A Platelet glycoprotein I 95.0 0.029 9.8E-07 46.6 5.3 14 348-361 33-46 (130)
181 3bos_A Putative DNA replicatio 95.0 0.01 3.6E-07 54.9 2.8 164 32-199 28-216 (242)
182 3rfe_A Platelet glycoprotein I 94.8 0.032 1.1E-06 46.3 5.0 54 349-405 11-66 (130)
183 2qz4_A Paraplegin; AAA+, SPG7, 94.3 0.71 2.4E-05 43.0 14.0 161 32-194 6-215 (262)
184 1sxj_E Activator 1 40 kDa subu 93.6 0.46 1.6E-05 46.7 11.6 165 32-199 14-236 (354)
185 3te6_A Regulatory protein SIR3 93.6 0.17 5.8E-06 48.9 8.0 132 33-167 21-211 (318)
186 3d8b_A Fidgetin-like protein 1 93.4 1.7 5.8E-05 42.7 15.3 165 32-199 84-294 (357)
187 1jbk_A CLPB protein; beta barr 93.2 0.065 2.2E-06 47.3 4.1 42 32-74 22-67 (195)
188 3eie_A Vacuolar protein sortin 92.9 1.9 6.5E-05 41.7 14.4 158 32-192 18-219 (322)
189 1sxj_D Activator 1 41 kDa subu 92.4 0.36 1.2E-05 47.3 8.7 165 31-199 36-234 (353)
190 3syl_A Protein CBBX; photosynt 92.1 0.2 7E-06 48.2 6.4 136 33-168 32-218 (309)
191 1d2n_A N-ethylmaleimide-sensit 92.1 3.1 0.00011 38.9 14.6 153 32-192 33-229 (272)
192 3pfi_A Holliday junction ATP-d 91.9 1.9 6.6E-05 41.8 13.2 164 32-199 29-226 (338)
193 1xwi_A SKD1 protein; VPS4B, AA 91.7 6.5 0.00022 37.8 16.6 157 32-193 12-215 (322)
194 1pgv_A TMD-1, tropomodulin TMD 91.6 0.2 6.9E-06 44.5 5.1 82 297-379 40-136 (197)
195 3u61_B DNA polymerase accessor 91.2 0.67 2.3E-05 44.9 9.0 165 32-201 26-218 (324)
196 1sxj_A Activator 1 95 kDa subu 91.2 1 3.4E-05 47.0 10.8 165 32-201 39-254 (516)
197 3pvs_A Replication-associated 91.0 2 6.9E-05 43.6 12.5 164 31-197 25-212 (447)
198 3vfd_A Spastin; ATPase, microt 90.3 8.9 0.0003 38.0 16.6 165 32-199 115-325 (389)
199 2qp9_X Vacuolar protein sortin 90.0 5.2 0.00018 39.2 14.3 157 32-193 51-253 (355)
200 1pgv_A TMD-1, tropomodulin TMD 90.0 0.29 1E-05 43.5 4.6 119 317-443 36-168 (197)
201 2zan_A Vacuolar protein sortin 89.8 11 0.00039 38.0 17.1 159 32-193 134-337 (444)
202 3b9p_A CG5977-PA, isoform A; A 88.0 18 0.0006 34.0 16.7 163 32-199 21-232 (297)
203 3cf0_A Transitional endoplasmi 88.0 10 0.00035 35.9 14.5 158 32-194 15-222 (301)
204 1a5t_A Delta prime, HOLB; zinc 87.6 9.5 0.00032 36.8 14.2 151 38-197 8-202 (334)
205 2p65_A Hypothetical protein PF 84.1 2.9 9.8E-05 36.0 7.7 42 32-74 22-67 (187)
206 3uk6_A RUVB-like 2; hexameric 83.8 6.1 0.00021 38.6 10.9 48 147-197 252-300 (368)
207 2z4s_A Chromosomal replication 83.8 3.7 0.00013 41.6 9.4 163 32-197 105-303 (440)
208 1l8q_A Chromosomal replication 83.4 4.1 0.00014 39.2 9.2 155 32-194 11-202 (324)
209 1sxj_C Activator 1 40 kDa subu 83.2 9.7 0.00033 36.8 11.9 160 32-195 25-207 (340)
210 1r6b_X CLPA protein; AAA+, N-t 83.1 17 0.0006 39.5 15.1 133 32-167 186-362 (758)
211 4b4t_J 26S protease regulatory 82.4 38 0.0013 33.5 15.6 158 32-193 148-354 (405)
212 2r62_A Cell division protease 80.1 3.2 0.00011 38.6 6.8 137 32-168 11-197 (268)
213 4b4t_L 26S protease subunit RP 77.5 22 0.00075 35.7 12.3 158 32-193 181-387 (437)
214 3pxg_A Negative regulator of g 76.1 9.5 0.00033 38.9 9.4 132 31-167 179-338 (468)
215 4b4t_H 26S protease regulatory 75.7 70 0.0024 32.2 15.8 158 32-193 209-415 (467)
216 4b4t_I 26S protease regulatory 75.3 53 0.0018 32.8 14.1 157 32-192 182-387 (437)
217 1qvr_A CLPB protein; coiled co 74.3 9.4 0.00032 42.4 9.4 133 31-166 169-344 (854)
218 4b4t_M 26S protease regulatory 74.1 20 0.00069 35.9 10.9 157 32-192 181-386 (434)
219 3hu3_A Transitional endoplasmi 71.0 28 0.00097 35.6 11.5 157 32-192 204-406 (489)
220 3ec2_A DNA replication protein 70.6 3.6 0.00012 35.6 4.0 99 37-135 19-141 (180)
221 4b4t_K 26S protease regulatory 67.8 1E+02 0.0035 30.7 14.6 157 32-192 172-378 (428)
222 2gno_A DNA polymerase III, gam 64.3 8.3 0.00028 36.8 5.5 129 36-167 1-152 (305)
223 3pxi_A Negative regulator of g 62.9 88 0.003 33.9 14.1 132 31-167 179-338 (758)
224 2ce7_A Cell division protein F 62.0 88 0.003 31.7 12.9 158 32-193 16-221 (476)
225 3n70_A Transport activator; si 61.8 1.7 6E-05 36.2 0.1 101 33-136 2-115 (145)
226 3co5_A Putative two-component 56.4 1.9 6.3E-05 36.0 -0.6 101 32-135 4-114 (143)
227 2bjv_A PSP operon transcriptio 54.6 21 0.00071 32.9 6.4 44 32-75 6-54 (265)
228 2w58_A DNAI, primosome compone 53.6 14 0.00047 32.4 4.7 105 32-136 25-158 (202)
229 4fcw_A Chaperone protein CLPB; 53.4 36 0.0012 32.0 8.0 43 32-74 17-71 (311)
230 3pxi_A Negative regulator of g 53.1 8.6 0.00029 42.0 3.9 134 32-167 491-675 (758)
231 1ofh_A ATP-dependent HSL prote 51.5 37 0.0013 31.8 7.8 133 32-166 15-214 (310)
232 1ojl_A Transcriptional regulat 49.2 43 0.0015 31.6 7.7 43 32-74 2-49 (304)
233 3cf2_A TER ATPase, transitiona 45.3 2.7E+02 0.0091 30.3 13.9 158 32-193 204-407 (806)
234 1ixz_A ATP-dependent metallopr 35.5 2.4E+02 0.0082 25.1 11.2 158 32-193 16-221 (254)
235 1in4_A RUVB, holliday junction 35.0 1.6E+02 0.0055 27.9 9.4 163 32-198 25-221 (334)
236 1jr3_D DNA polymerase III, del 33.3 1.2E+02 0.0041 28.8 8.3 151 44-198 9-183 (343)
237 1ypw_A Transitional endoplasmi 31.1 2.9E+02 0.0099 30.1 11.6 137 32-169 204-387 (806)
238 2x8a_A Nuclear valosin-contain 28.6 3.4E+02 0.012 24.7 11.9 136 32-167 10-191 (274)
239 2lz0_A Uncharacterized protein 28.4 49 0.0017 25.3 3.5 47 357-405 7-54 (100)
240 1g5t_A COB(I)alamin adenosyltr 27.8 26 0.00087 30.8 2.0 51 88-138 107-164 (196)
241 1lv7_A FTSH; alpha/beta domain 27.4 3.3E+02 0.011 24.2 15.0 137 32-168 12-196 (257)
242 2gkw_B Tumor necrosis factor r 26.9 44 0.0015 17.9 2.0 18 120-137 3-20 (26)
243 2dhr_A FTSH; AAA+ protein, hex 24.3 5.6E+02 0.019 25.9 13.3 158 32-193 31-236 (499)
244 3m6a_A ATP-dependent protease 23.4 2.9E+02 0.0098 28.4 9.4 132 33-167 82-266 (543)
245 1r6b_X CLPA protein; AAA+, N-t 23.0 2.2E+02 0.0075 30.7 8.8 44 32-75 458-513 (758)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.96 E-value=4.4e-29 Score=267.05 Aligned_cols=221 Identities=15% Similarity=0.064 Sum_probs=169.2
Q ss_pred cccHHHHHHHHHHhhcC--CCceEEEEEeccc--------------------------h-------------hHHHHHHH
Q 037229 35 VGLESTFDQVWSCLVEE--EQVGIIGLYGMEG--------------------------W-------------IQEQIRRK 73 (577)
Q Consensus 35 vGr~~~~~~i~~~L~~~--~~~~vv~I~G~gG--------------------------w-------------~~~~i~~~ 73 (577)
|||++++++|.++|... .+++||+|||||| | ++++|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 69999999999999764 4689999999999 2 45667777
Q ss_pred hCCCcc-----hhccCCHHHHHHHHHHhcc-c-cEEEEEecCCChhhhcccCCCCCCCCCCcEEEEEeCchhhhhcCC-C
Q 037229 74 LGLVDD-----LWARKGLEEKAMNIFGILS-K-EFVLCWMMCGSELILTQMGVPVPNPKRMSKVLFTTRFVEVYGHKE-A 145 (577)
Q Consensus 74 l~~~~~-----~~~~~~~~~~~~~l~~~L~-k-r~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIivTTR~~~v~~~~~-~ 145 (577)
++.... ..+..+.+.++..+++.|+ + ||||||||||+.+++ .+. ..+||+||||||++.++..++ .
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~-----~~~gs~ilvTTR~~~v~~~~~~~ 284 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWA-----QELRLRCLVTTRDVEISNAASQT 284 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHH-----HHTTCEEEEEESBGGGGGGCCSC
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-ccc-----ccCCCEEEEEcCCHHHHHHcCCC
Confidence 765421 1123456778899999999 7 999999999998764 111 126999999999999998886 4
Q ss_pred CceEecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCchHHHHHHHHHhcCCCcccc-------------
Q 037229 146 DEMFRMECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLPLVLVTTARAMAYKKTIFGL------------- 212 (577)
Q Consensus 146 ~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~~~~~~~~W------------- 212 (577)
..+|++++|+.++||+||.++||... .++.+.+++.+|+++|+|+|||++++|+.|+.+ . .+|
T Consensus 285 ~~~~~l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~-w~~~~~l~~~l~~~~~ 360 (549)
T 2a5y_B 285 CEFIEVTSLEIDECYDFLEAYGMPMP--VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T-FEKMAQLNNKLESRGL 360 (549)
T ss_dssp EEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S-HHHHHHHHHHHHHHCS
T ss_pred CeEEECCCCCHHHHHHHHHHHhcCCC--CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h-HHHHHHhHHHhhcccH
Confidence 46899999999999999999998764 246788899999999999999999999887653 1 111
Q ss_pred ---------------------------------------------------cc--ccccccCCchhHHHHHHHHHHHhhc
Q 037229 213 ---------------------------------------------------AR--GILTQMIHTSGAHNERYYNIGVLRK 239 (577)
Q Consensus 213 ---------------------------------------------------a~--g~i~~~~~~~~~~~~~~~~~~~L~~ 239 (577)
|+ ||+........+++++. |+++|++
T Consensus 361 ~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~ 439 (549)
T 2a5y_B 361 VGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIPVKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSK 439 (549)
T ss_dssp STTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEEHHHHHHHSCC-------CCCTHHHHH-HHHHTTT
T ss_pred HHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeeeeeeeeeeccceeccCCCCCCHHHHHH-HHHHHHH
Confidence 44 66655432345677777 9999999
Q ss_pred -------cCCCCCcEEehHHHHHHHHHHHhhhhh
Q 037229 240 -------EEDGEGSVTLHDVIRDMALWIAYELAE 266 (577)
Q Consensus 240 -------~~~~~~~~~mhdli~d~~~~~~~~~~~ 266 (577)
..+...+|+|||++|++|+.++.+++.
T Consensus 440 rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 440 RGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp BSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred cCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 123456899999999999988876543
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.89 E-value=1.5e-22 Score=238.69 Aligned_cols=221 Identities=18% Similarity=0.190 Sum_probs=170.0
Q ss_pred CCCccccHHHHHHHHHHhhcC-CCceEEEEEeccc--------------------------h-------------hHHHH
Q 037229 31 SDLTVGLESTFDQVWSCLVEE-EQVGIIGLYGMEG--------------------------W-------------IQEQI 70 (577)
Q Consensus 31 ~~~~vGr~~~~~~i~~~L~~~-~~~~vv~I~G~gG--------------------------w-------------~~~~i 70 (577)
...+|||++++++|.++|... +++++|+|+|||| | .++.+
T Consensus 123 ~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 202 (1249)
T 3sfz_A 123 PVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNL 202 (1249)
T ss_dssp CSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHH
T ss_pred CceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHH
Confidence 367999999999999999765 7789999999999 2 35566
Q ss_pred HHHhCCCcc--hhccCCHHHHHHHHHHhcc-c--cEEEEEecCCChhhhcccCCCCCCCCCCcEEEEEeCchhhhhc-CC
Q 037229 71 RRKLGLVDD--LWARKGLEEKAMNIFGILS-K--EFVLCWMMCGSELILTQMGVPVPNPKRMSKVLFTTRFVEVYGH-KE 144 (577)
Q Consensus 71 ~~~l~~~~~--~~~~~~~~~~~~~l~~~L~-k--r~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIivTTR~~~v~~~-~~ 144 (577)
+..+..... .....+.+.+...++..+. + ||||||||||+..+|+.+ .+||+||||||++.++.. ++
T Consensus 203 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~~~~ 275 (1249)
T 3sfz_A 203 CMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDSVMG 275 (1249)
T ss_dssp HHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTTCCS
T ss_pred HHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHhhcC
Confidence 666654321 1134677889999999999 7 999999999999988775 568999999999999854 45
Q ss_pred CCceEecCC-CCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCchHHHHHHHHHhcCCCcccc-----------
Q 037229 145 ADEMFRMEC-LRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLPLVLVTTARAMAYKKTIFGL----------- 212 (577)
Q Consensus 145 ~~~~~~l~~-L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~~~~~~~~W----------- 212 (577)
....+++.+ |+.++|++||...++... +.+.+.+++|+++|+|+||||+.+|++|+.+. ..|
T Consensus 276 ~~~~~~~~~~l~~~~a~~l~~~~~~~~~----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~ 349 (1249)
T 3sfz_A 276 PKHVVPVESGLGREKGLEILSLFVNMKK----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQ 349 (1249)
T ss_dssp CBCCEECCSSCCHHHHHHHHHHHHTSCS----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCC
T ss_pred CceEEEecCCCCHHHHHHHHHHhhCCCh----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhhh
Confidence 667899996 999999999999986433 45667899999999999999999999998743 223
Q ss_pred -----------------------------------ccccccccCCc---------hhHHHHHHHHHHHhhc-------cC
Q 037229 213 -----------------------------------ARGILTQMIHT---------SGAHNERYYNIGVLRK-------EE 241 (577)
Q Consensus 213 -----------------------------------a~g~i~~~~~~---------~~~~~~~~~~~~~L~~-------~~ 241 (577)
..+++.+.... ...++.+.+++++|++ ..
T Consensus 350 ~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~~~~~ 429 (1249)
T 3sfz_A 350 FKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCNRN 429 (1249)
T ss_dssp CCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEES
T ss_pred hhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccceEEecC
Confidence 01111111000 1114567889999998 23
Q ss_pred CCCCcEEehHHHHHHHHHHHhhh
Q 037229 242 DGEGSVTLHDVIRDMALWIAYEL 264 (577)
Q Consensus 242 ~~~~~~~mhdli~d~~~~~~~~~ 264 (577)
+....|+|||++|++++..+.++
T Consensus 430 ~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 430 GKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp SSSEEEECCHHHHHHHHHHTGGG
T ss_pred CCceEEEecHHHHHHHHhhhhHH
Confidence 44556999999999999887654
No 3
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=3.9e-22 Score=199.46 Aligned_cols=217 Identities=18% Similarity=0.200 Sum_probs=176.5
Q ss_pred CCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchhhhcCcCCCEEeccCCCCCcccccccCCCcCcEecc
Q 037229 297 SPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSSSGILELPKELGFLGNLACLNL 376 (577)
Q Consensus 297 ~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l 376 (577)
..+++.|++.++.+..+|.. +..+++|++|++++| .+..+|..++++++|++|+|++|.+..+|..++++++|++|++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~-l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQ-AFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCSSCCSC-GGGGTTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCchhcChh-hhhCCCCCEEECCCC-CccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 46678888888888888877 556899999999999 8888898899999999999999998899989999999999999
Q ss_pred cccccccccchHHhcC---------CCCCcEEEeeeecCcccccccccCCccCcccccccccCCccCceeEEEecCcccc
Q 037229 377 ENTSSHGTITRQLRSN---------FSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHLNVFSITLKSSYAL 447 (577)
Q Consensus 377 ~~~~~l~~lp~~~i~~---------l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l 447 (577)
++|..+..+|.. ++. +++|++|++.+|. ....+..++.+++|+.|+++.+....+
T Consensus 158 ~~n~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n~---------------l~~lp~~l~~l~~L~~L~L~~N~l~~l 221 (328)
T 4fcg_A 158 RACPELTELPEP-LASTDASGEHQGLVNLQSLRLEWTG---------------IRSLPASIANLQNLKSLKIRNSPLSAL 221 (328)
T ss_dssp EEETTCCCCCSC-SEEEC-CCCEEESTTCCEEEEEEEC---------------CCCCCGGGGGCTTCCEEEEESSCCCCC
T ss_pred CCCCCccccChh-HhhccchhhhccCCCCCEEECcCCC---------------cCcchHhhcCCCCCCEEEccCCCCCcC
Confidence 998777888876 544 8999999999987 225566788899999999987765432
Q ss_pred cCCCccCccceeeecCCCCCCCcEEEecccCCceEEecccCCCCCCCCC-ccCCCCCcceEeeccCCCcceecCC----C
Q 037229 448 QKPNSEHTRSLEVLPLAEMRQLDKLHIAFCTRLQEFEIECPGRNLMDLT-WLIFAPNFRKIDINQSSHMEEIICI----D 522 (577)
Q Consensus 448 ~~l~~~~l~~L~~~~l~~l~~L~~L~l~~~~~l~~l~l~~~~~~l~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~----~ 522 (577)
+. .+..+++|++|++++|.... .+| +++.+++|++|+|++|.....++.. +
T Consensus 222 ~~------------~l~~l~~L~~L~Ls~n~~~~------------~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~ 277 (328)
T 4fcg_A 222 GP------------AIHHLPKLEELDLRGCTALR------------NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT 277 (328)
T ss_dssp CG------------GGGGCTTCCEEECTTCTTCC------------BCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCT
T ss_pred ch------------hhccCCCCCEEECcCCcchh------------hhHHHhcCCCCCCEEECCCCCchhhcchhhhcCC
Confidence 22 25667889999999875432 223 6778999999999999887777654 8
Q ss_pred cccEEecCCcccccccccCCCCCCCcceEeeec
Q 037229 523 RLRKVSGGYKKILKRIYPDVLPLKNLKGITVSS 555 (577)
Q Consensus 523 ~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~ 555 (577)
+|+.|+|++|+.+..+|.....+++|+.+.+..
T Consensus 278 ~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 278 QLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp TCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred CCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 999999999999999998888899999988764
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=7.1e-22 Score=197.55 Aligned_cols=218 Identities=19% Similarity=0.268 Sum_probs=178.8
Q ss_pred CCCcccEEEccCCCCCcccchhhhcCcCCCEEeccCCCCCcccccccCCCcCcEecccccccccccchHHhcCCCCCcEE
Q 037229 320 FKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSSSGILELPKELGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVL 399 (577)
Q Consensus 320 ~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L 399 (577)
...++++|+++++ .++.+|..++++++|++|+|++|.+..+|..++++++|++|++++| .+..+|.. ++++++|++|
T Consensus 79 ~~~~l~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~-l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPAS-IASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESS-CCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGG-GGGCTTCCEE
T ss_pred cccceeEEEccCC-CchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHH-HhcCcCCCEE
Confidence 4578999999999 9999999999999999999999999999999999999999999999 78899987 9999999999
Q ss_pred EeeeecCcccccccccCCccCcccccccccCCccCceeEEEecCcccccCCCccCccceeeecCCCCCCCcEEEecccCC
Q 037229 400 RMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHLNVFSITLKSSYALQKPNSEHTRSLEVLPLAEMRQLDKLHIAFCTR 479 (577)
Q Consensus 400 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~l~~~~l~~L~~~~l~~l~~L~~L~l~~~~~ 479 (577)
++.+|...+. ++..+ ........++.+++|+.|+++.+....++. .+..+++|++|+++++
T Consensus 156 ~L~~n~~~~~-~p~~~----~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~------------~l~~l~~L~~L~L~~N-- 216 (328)
T 4fcg_A 156 SIRACPELTE-LPEPL----ASTDASGEHQGLVNLQSLRLEWTGIRSLPA------------SIANLQNLKSLKIRNS-- 216 (328)
T ss_dssp EEEEETTCCC-CCSCS----EEEC-CCCEEESTTCCEEEEEEECCCCCCG------------GGGGCTTCCEEEEESS--
T ss_pred ECCCCCCccc-cChhH----hhccchhhhccCCCCCEEECcCCCcCcchH------------hhcCCCCCCEEEccCC--
Confidence 9999872110 00000 000112235569999999999886553322 2567889999999987
Q ss_pred ceEEecccCCCCCCCCC-ccCCCCCcceEeeccCCCcceecCC----CcccEEecCCcccccccccCCCCCCCcceEeee
Q 037229 480 LQEFEIECPGRNLMDLT-WLIFAPNFRKIDINQSSHMEEIICI----DRLRKVSGGYKKILKRIYPDVLPLKNLKGITVS 554 (577)
Q Consensus 480 l~~l~l~~~~~~l~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~----~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~ 554 (577)
.+..++ .++.+++|+.|++++|.....++.. ++|+.|++++|..+..+|.....+++|++|+++
T Consensus 217 -----------~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~ 285 (328)
T 4fcg_A 217 -----------PLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLR 285 (328)
T ss_dssp -----------CCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECT
T ss_pred -----------CCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCC
Confidence 444554 6789999999999999988776554 999999999999999999888899999999999
Q ss_pred cCCCCCcCCCCCCccc
Q 037229 555 SCPNLKRLPLNSNSDQ 570 (577)
Q Consensus 555 ~c~~L~~lp~~~~~~~ 570 (577)
+|+.+..+|......+
T Consensus 286 ~n~~~~~iP~~l~~L~ 301 (328)
T 4fcg_A 286 GCVNLSRLPSLIAQLP 301 (328)
T ss_dssp TCTTCCCCCGGGGGSC
T ss_pred CCCchhhccHHHhhcc
Confidence 9999999997665443
No 5
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.87 E-value=4.1e-21 Score=197.21 Aligned_cols=126 Identities=18% Similarity=0.186 Sum_probs=108.5
Q ss_pred eeEEEEecCCCCCCcCC--CCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccc-hhhhcCcCCCEEecc
Q 037229 278 TRRVSLKENKIGDLWET--PTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLP-SRISRLVSLQHLDLS 354 (577)
Q Consensus 278 ~r~l~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~L~ 354 (577)
++.+.+.++.+..+|.. ..+++|++|++.+|.+..+++..|..+++|++|++++| .+..+| ..++.+++|++|+++
T Consensus 47 l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~ 125 (390)
T 3o6n_A 47 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLE 125 (390)
T ss_dssp CSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred ceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCCEEECC
Confidence 78899999888888873 67889999999999988888777899999999999999 888775 457899999999999
Q ss_pred CCCCCccccc-ccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeec
Q 037229 355 SSGILELPKE-LGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFY 405 (577)
Q Consensus 355 ~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 405 (577)
+|.+..+|.. ++++++|++|++++| .+..++...++++++|++|++.+|.
T Consensus 126 ~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~ 176 (390)
T 3o6n_A 126 RNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNR 176 (390)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSSC
T ss_pred CCccCcCCHHHhcCCCCCcEEECCCC-ccCccChhhccCCCCCCEEECCCCc
Confidence 9999999887 488999999999998 6777766558899999999999887
No 6
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.86 E-value=9.4e-21 Score=191.33 Aligned_cols=258 Identities=17% Similarity=0.192 Sum_probs=178.4
Q ss_pred eeEEEEecCCCCCCcCCCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchhhhcCcCCCEEeccCCC
Q 037229 278 TRRVSLKENKIGDLWETPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSSSG 357 (577)
Q Consensus 278 ~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~ 357 (577)
++++.+.++.+..++....+++|++|++++|.+..++. +..+++|++|++++| .++.+| .++.+++|++|++++|.
T Consensus 46 L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n-~i~~~~-~~~~l~~L~~L~l~~n~ 121 (347)
T 4fmz_A 46 ITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTN-KITDIS-ALQNLTNLRELYLNEDN 121 (347)
T ss_dssp CSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCG-GGTTCTTCSEEECTTSC
T ss_pred ccEEEEeCCccccchhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCC-cccCch-HHcCCCcCCEEECcCCc
Confidence 89999999999888888889999999999999888887 889999999999999 998886 68999999999999999
Q ss_pred CCcccccccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCccCcee
Q 037229 358 ILELPKELGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHLNVF 437 (577)
Q Consensus 358 i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L 437 (577)
+..+|. +..+++|++|++++|..+..++. +..+++|++|++.+|..... ..+..+++|+.|
T Consensus 122 i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~----------------~~~~~l~~L~~L 182 (347)
T 4fmz_A 122 ISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDV----------------TPIANLTDLYSL 182 (347)
T ss_dssp CCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCC----------------GGGGGCTTCSEE
T ss_pred ccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCc----------------hhhccCCCCCEE
Confidence 998887 88999999999999976666665 88999999999998862211 114455555555
Q ss_pred EEEecCcccccCCCcc-Ccccee--------eecCCCCCCCcEEEecccC-----------CceEEecccCCCCCCCCCc
Q 037229 438 SITLKSSYALQKPNSE-HTRSLE--------VLPLAEMRQLDKLHIAFCT-----------RLQEFEIECPGRNLMDLTW 497 (577)
Q Consensus 438 ~l~~~~~~~l~~l~~~-~l~~L~--------~~~l~~l~~L~~L~l~~~~-----------~l~~l~l~~~~~~l~~l~~ 497 (577)
+++.+....+..+... .++.|. ...+..+++|++|++++|. .++.+.++.+ .+..++.
T Consensus 183 ~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n--~l~~~~~ 260 (347)
T 4fmz_A 183 SLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTN--QISDINA 260 (347)
T ss_dssp ECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS--CCCCCGG
T ss_pred EccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCC--ccCCChh
Confidence 5554433322221100 011111 0013344555555555432 3334444433 5566666
Q ss_pred cCCCCCcceEeeccCCCcceecCC---CcccEEecCCcccccccccCCCCCCCcceEeeecCCCCCcC
Q 037229 498 LIFAPNFRKIDINQSSHMEEIICI---DRLRKVSGGYKKILKRIYPDVLPLKNLKGITVSSCPNLKRL 562 (577)
Q Consensus 498 l~~l~~L~~L~l~~~~~~~~~~~~---~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~~L~~l 562 (577)
+..+++|+.|++++|... .+... ++|+.|++++|.--...+.....+++|++|++++|+ +..+
T Consensus 261 ~~~l~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~ 326 (347)
T 4fmz_A 261 VKDLTKLKMLNVGSNQIS-DISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDI 326 (347)
T ss_dssp GTTCTTCCEEECCSSCCC-CCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCC
T ss_pred HhcCCCcCEEEccCCccC-CChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccc
Confidence 777888888888877533 22222 788888888875333333334567888888888774 4443
No 7
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.86 E-value=1.6e-20 Score=198.29 Aligned_cols=256 Identities=22% Similarity=0.200 Sum_probs=139.5
Q ss_pred eeEEEEecCCCCCCcC--CCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchh-hhcCcCCCEEecc
Q 037229 278 TRRVSLKENKIGDLWE--TPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSR-ISRLVSLQHLDLS 354 (577)
Q Consensus 278 ~r~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~L~ 354 (577)
++.+.+.++.+..++. ...+++|++|++.+|.+..+++..|..+++|++|+|++| .++.+|.. ++++++|++|+|+
T Consensus 34 l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls 112 (477)
T 2id5_A 34 TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDIS 112 (477)
T ss_dssp CSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCTTSSTTCTTCCEEECT
T ss_pred CcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cCCccCcccccCCCCCCEEECC
Confidence 4555555555554432 245555555555555555554444555555555555555 55555432 4555555555555
Q ss_pred CCCCCcc-cccccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCcc
Q 037229 355 SSGILEL-PKELGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKH 433 (577)
Q Consensus 355 ~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 433 (577)
+|.+..+ |..+.++++|++|++++| .+..++...+.++++|++|++.+|. ........+..+++
T Consensus 113 ~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~--------------l~~~~~~~l~~l~~ 177 (477)
T 2id5_A 113 ENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLEKCN--------------LTSIPTEALSHLHG 177 (477)
T ss_dssp TSCCCEECTTTTTTCTTCCEEEECCT-TCCEECTTSSTTCTTCCEEEEESCC--------------CSSCCHHHHTTCTT
T ss_pred CCccccCChhHccccccCCEEECCCC-ccceeChhhccCCCCCCEEECCCCc--------------CcccChhHhcccCC
Confidence 5555543 233555555555555555 4444433225555555555555554 11122233555566
Q ss_pred CceeEEEecCcccccCCCccCccceeeecCCCCCCCcEEEecccCC-------------ceEEecccCCCCCCCCC--cc
Q 037229 434 LNVFSITLKSSYALQKPNSEHTRSLEVLPLAEMRQLDKLHIAFCTR-------------LQEFEIECPGRNLMDLT--WL 498 (577)
Q Consensus 434 L~~L~l~~~~~~~l~~l~~~~l~~L~~~~l~~l~~L~~L~l~~~~~-------------l~~l~l~~~~~~l~~l~--~l 498 (577)
|+.|+++.+....+.. ..+..+++|+.|++++|.. ++.+.+..+ .++.++ .+
T Consensus 178 L~~L~l~~n~i~~~~~-----------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n--~l~~~~~~~~ 244 (477)
T 2id5_A 178 LIVLRLRHLNINAIRD-----------YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC--NLTAVPYLAV 244 (477)
T ss_dssp CCEEEEESCCCCEECT-----------TCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESS--CCCSCCHHHH
T ss_pred CcEEeCCCCcCcEeCh-----------hhcccCcccceeeCCCCccccccCcccccCccccEEECcCC--cccccCHHHh
Confidence 6666665544332221 1245566777777776553 333333333 556655 46
Q ss_pred CCCCCcceEeeccCCCcceecCC----CcccEEecCCccccccc-ccCCCCCCCcceEeeecCCCCCcCCC
Q 037229 499 IFAPNFRKIDINQSSHMEEIICI----DRLRKVSGGYKKILKRI-YPDVLPLKNLKGITVSSCPNLKRLPL 564 (577)
Q Consensus 499 ~~l~~L~~L~l~~~~~~~~~~~~----~~L~~L~l~~~~~l~~l-~~~~~~~~~L~~L~i~~c~~L~~lp~ 564 (577)
..+++|+.|+|++|......... ++|+.|+|+++. +..+ +.....+++|++|+++++ +++.+|.
T Consensus 245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~ 313 (477)
T 2id5_A 245 RHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ-LAVVEPYAFRGLNYLRVLNVSGN-QLTTLEE 313 (477)
T ss_dssp TTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSC-CSEECTTTBTTCTTCCEEECCSS-CCSCCCG
T ss_pred cCccccCeeECCCCcCCccChhhccccccCCEEECCCCc-cceECHHHhcCcccCCEEECCCC-cCceeCH
Confidence 77888888888887743322211 788888888754 4444 344556788888888765 4555543
No 8
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.85 E-value=9e-20 Score=182.74 Aligned_cols=241 Identities=18% Similarity=0.155 Sum_probs=174.7
Q ss_pred eeEEEEecCCCCCCcCCCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCccc-chhhhcCcCCCEEeccCC
Q 037229 278 TRRVSLKENKIGDLWETPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKL-PSRISRLVSLQHLDLSSS 356 (577)
Q Consensus 278 ~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~L~~~ 356 (577)
.+.+.+.++.+..+|... .+.+++|++++|.+..++...|..+++|++|++++| .+..+ |..++.+++|++|++++|
T Consensus 33 l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 33 LRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp TTEEECTTSCCCSCCCSC-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSS
T ss_pred CeEEEecCCCccccCccC-CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEECCCC
Confidence 677888888888877643 478999999999999998877999999999999999 99887 778999999999999999
Q ss_pred CCCcccccccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCccCce
Q 037229 357 GILELPKELGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHLNV 436 (577)
Q Consensus 357 ~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~ 436 (577)
.++.+|..+. ++|++|++++| .+..++...+.++++|++|++.+|... ........+..+++|+.
T Consensus 111 ~l~~l~~~~~--~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~------------~~~~~~~~~~~l~~L~~ 175 (330)
T 1xku_A 111 QLKELPEKMP--KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLK------------SSGIENGAFQGMKKLSY 175 (330)
T ss_dssp CCSBCCSSCC--TTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCC------------GGGBCTTGGGGCTTCCE
T ss_pred cCCccChhhc--ccccEEECCCC-cccccCHhHhcCCccccEEECCCCcCC------------ccCcChhhccCCCCcCE
Confidence 9999998875 79999999999 788888766899999999999998711 12244567888999999
Q ss_pred eEEEecCcccccCCCccCccceeeecCCCCCCCcEEEecccCCceEEecccCCCCCCCC--CccCCCCCcceEeeccCCC
Q 037229 437 FSITLKSSYALQKPNSEHTRSLEVLPLAEMRQLDKLHIAFCTRLQEFEIECPGRNLMDL--TWLIFAPNFRKIDINQSSH 514 (577)
Q Consensus 437 L~l~~~~~~~l~~l~~~~l~~L~~~~l~~l~~L~~L~l~~~~~l~~l~l~~~~~~l~~l--~~l~~l~~L~~L~l~~~~~ 514 (577)
|+++.+....++.. -.++|++|+++++. +... ..++.+++|+.|++++|..
T Consensus 176 L~l~~n~l~~l~~~--------------~~~~L~~L~l~~n~-------------l~~~~~~~~~~l~~L~~L~Ls~n~l 228 (330)
T 1xku_A 176 IRIADTNITTIPQG--------------LPPSLTELHLDGNK-------------ITKVDAASLKGLNNLAKLGLSFNSI 228 (330)
T ss_dssp EECCSSCCCSCCSS--------------CCTTCSEEECTTSC-------------CCEECTGGGTTCTTCCEEECCSSCC
T ss_pred EECCCCccccCCcc--------------ccccCCEEECCCCc-------------CCccCHHHhcCCCCCCEEECCCCcC
Confidence 99987765543321 12566666666552 2211 1445566666666666653
Q ss_pred cceecCC----CcccEEecCCcccccccccCCCCCCCcceEeeecCCCCCcCCC
Q 037229 515 MEEIICI----DRLRKVSGGYKKILKRIYPDVLPLKNLKGITVSSCPNLKRLPL 564 (577)
Q Consensus 515 ~~~~~~~----~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~~L~~lp~ 564 (577)
....... ++|+.|+++++ .+..+|.....+++|++|++++| +++.+|.
T Consensus 229 ~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~i~~~~~ 280 (330)
T 1xku_A 229 SAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN-NISAIGS 280 (330)
T ss_dssp CEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCCCT
T ss_pred ceeChhhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCC-cCCccCh
Confidence 3222211 56666666664 35555555555666666666655 3444443
No 9
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=2.5e-20 Score=202.09 Aligned_cols=269 Identities=14% Similarity=0.136 Sum_probs=164.8
Q ss_pred eeEEEEecCCCCCCcCC--CCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccch-hhhcCcCCCEEecc
Q 037229 278 TRRVSLKENKIGDLWET--PTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPS-RISRLVSLQHLDLS 354 (577)
Q Consensus 278 ~r~l~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~L~ 354 (577)
++.+.+.++.+..+|.. ..+++|++|++.+|.+..+++..|..+++|++|+|++| .+..+|+ .++.+++|++|+|+
T Consensus 53 l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~ 131 (597)
T 3oja_B 53 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLE 131 (597)
T ss_dssp CSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred ceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCCEEEee
Confidence 67888888888777764 67888999999999888888766888999999999999 8887755 46889999999999
Q ss_pred CCCCCccccc-ccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeecCcccccc--cccCCccCcccccccccCC
Q 037229 355 SSGILELPKE-LGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMK--ADSLPFGGSEFLVEQLCCL 431 (577)
Q Consensus 355 ~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~L 431 (577)
+|.+..+|.. ++++++|++|++++| .+..++...++++++|++|++++|...++... ..+..+......+..+...
T Consensus 132 ~n~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~ 210 (597)
T 3oja_B 132 RNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIP 210 (597)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECC
T ss_pred CCCCCCCCHHHhccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCC
Confidence 9999888887 488999999999998 67777654488899999999988863221100 0111111111222223333
Q ss_pred ccCceeEEEecCcccccCCCccCcccee--------eecCCCCCCCcEEEecccCCceEEecccCCCCCCCC--CccCCC
Q 037229 432 KHLNVFSITLKSSYALQKPNSEHTRSLE--------VLPLAEMRQLDKLHIAFCTRLQEFEIECPGRNLMDL--TWLIFA 501 (577)
Q Consensus 432 ~~L~~L~l~~~~~~~l~~l~~~~l~~L~--------~~~l~~l~~L~~L~l~~~~~l~~l~l~~~~~~l~~l--~~l~~l 501 (577)
.+|+.|+++.+....+.......++.|. ...+..+++|+.|+++++ .+... ..++.+
T Consensus 211 ~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N-------------~l~~~~~~~~~~l 277 (597)
T 3oja_B 211 IAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYN-------------ELEKIMYHPFVKM 277 (597)
T ss_dssp TTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSS-------------CCCEEESGGGTTC
T ss_pred chhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCC-------------ccCCCCHHHhcCc
Confidence 4444444443333222211111111111 001222333444444333 33222 245566
Q ss_pred CCcceEeeccCCCcceecCC----CcccEEecCCcccccccccCCCCCCCcceEeeecCCCCCcCCC
Q 037229 502 PNFRKIDINQSSHMEEIICI----DRLRKVSGGYKKILKRIYPDVLPLKNLKGITVSSCPNLKRLPL 564 (577)
Q Consensus 502 ~~L~~L~l~~~~~~~~~~~~----~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~~L~~lp~ 564 (577)
++|+.|+|++|.... ++.. ++|+.|+|++|. +..+|.....+++|++|++++| ++..+|+
T Consensus 278 ~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L~~L~L~~N-~l~~~~~ 341 (597)
T 3oja_B 278 QRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHN-SIVTLKL 341 (597)
T ss_dssp SSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSS-CCCCCCC
T ss_pred cCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCC-CCccCcccccCCCCCEEECCCC-CCCCcCh
Confidence 677777776665332 2221 677777777653 5566655556777777777665 3444443
No 10
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.84 E-value=4.2e-21 Score=209.04 Aligned_cols=208 Identities=15% Similarity=0.163 Sum_probs=145.1
Q ss_pred CccccHHHHHHHHHHhhcCCCceEEEEEeccc-------------------------h-----------hHHHHHHH---
Q 037229 33 LTVGLESTFDQVWSCLVEEEQVGIIGLYGMEG-------------------------W-----------IQEQIRRK--- 73 (577)
Q Consensus 33 ~~vGr~~~~~~i~~~L~~~~~~~vv~I~G~gG-------------------------w-----------~~~~i~~~--- 73 (577)
..|||++++++|.++|...+..+||+|+|||| | +++.|++.
T Consensus 129 ~~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~ 208 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhh
Confidence 34999999999999998755689999999999 2 33444332
Q ss_pred hCCCcc-hh-----ccCCHHHHHHHHHHhc---c-ccEEEEEecCCChhhhcccCCCCCCCCCCcEEEEEeCchhhhhcC
Q 037229 74 LGLVDD-LW-----ARKGLEEKAMNIFGIL---S-KEFVLCWMMCGSELILTQMGVPVPNPKRMSKVLFTTRFVEVYGHK 143 (577)
Q Consensus 74 l~~~~~-~~-----~~~~~~~~~~~l~~~L---~-kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIivTTR~~~v~~~~ 143 (577)
+..... .. ...+.+.+...+++.| . ||+||||||||+.++|+.+. .|||||||||++.++..+
T Consensus 209 i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~~l 281 (1221)
T 1vt4_I 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTDFL 281 (1221)
T ss_dssp HCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHHHH
T ss_pred cCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccChHHHHhc
Confidence 211000 00 0123455667777766 6 99999999999999998752 689999999999998654
Q ss_pred CCCceEecC------CCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCchHHHHHHHHHhcCC-Ccccc----
Q 037229 144 EADEMFRME------CLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLPLVLVTTARAMAYKK-TIFGL---- 212 (577)
Q Consensus 144 ~~~~~~~l~------~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~~~~-~~~~W---- 212 (577)
.....|+++ +|+.+|||+||++.+... ..++..++ |+|+||||+.+|+.|+.+. ....|
T Consensus 282 ~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-------~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~~ 351 (1221)
T 1vt4_I 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-------PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHVN 351 (1221)
T ss_dssp HHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC-------TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHCS
T ss_pred CCCeEEEecCccccCCcCHHHHHHHHHHHcCCC-------HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcCC
Confidence 444467777 999999999999984321 23344444 9999999999999999863 55667
Q ss_pred -----------------cc--------ccccccCCch-h-H--------HHHHHHHHHHhhc-----cCCCCCcEEehHH
Q 037229 213 -----------------AR--------GILTQMIHTS-G-A--------HNERYYNIGVLRK-----EEDGEGSVTLHDV 252 (577)
Q Consensus 213 -----------------a~--------g~i~~~~~~~-~-~--------~~~~~~~~~~L~~-----~~~~~~~~~mhdl 252 (577)
.+ +.+....... . . ++.+..++++|++ ..+....|+|||+
T Consensus 352 ~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~d~~~~rYrMHDL 431 (1221)
T 1vt4_I 352 CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI 431 (1221)
T ss_dssp CHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSBCSSSSEEBCCCH
T ss_pred hhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEEeCCCCEEEehHH
Confidence 00 0111110100 0 0 2357889999999 2334678999999
Q ss_pred HHHHH
Q 037229 253 IRDMA 257 (577)
Q Consensus 253 i~d~~ 257 (577)
+++++
T Consensus 432 llELr 436 (1221)
T 1vt4_I 432 YLELK 436 (1221)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99865
No 11
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.84 E-value=8.7e-20 Score=184.20 Aligned_cols=257 Identities=17% Similarity=0.188 Sum_probs=180.6
Q ss_pred CeeEEEEecCCCCCCcCCCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchhhhcCcCCCEEeccCC
Q 037229 277 GTRRVSLKENKIGDLWETPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSSS 356 (577)
Q Consensus 277 ~~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~ 356 (577)
.++.+.+.++.+..++....+++|++|++.+|.+..++. +..+++|++|++++| .+..+|. +..+++|++|++++|
T Consensus 67 ~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~l~~n 142 (347)
T 4fmz_A 67 NLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISA--LQNLTNLRELYLNED-NISDISP-LANLTKMYSLNLGAN 142 (347)
T ss_dssp TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEECTTS-CCCCCGG-GTTCTTCCEEECTTC
T ss_pred CccEEEccCCccccchhhhcCCcCCEEEccCCcccCchH--HcCCCcCCEEECcCC-cccCchh-hccCCceeEEECCCC
Confidence 389999999998888888889999999999999888764 889999999999999 8888875 888999999999998
Q ss_pred CCCcccccccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeecCcccccc---cccCCcc---CcccccccccC
Q 037229 357 GILELPKELGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMK---ADSLPFG---GSEFLVEQLCC 430 (577)
Q Consensus 357 ~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~---~~~~~~~---~~~~~~~~l~~ 430 (577)
.....+..+..+++|++|++++| .+..++. +..+++|++|++.+|....+..- ..+..+. ........+..
T Consensus 143 ~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 219 (347)
T 4fmz_A 143 HNLSDLSPLSNMTGLNYLTVTES-KVKDVTP--IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVAN 219 (347)
T ss_dssp TTCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGG
T ss_pred CCcccccchhhCCCCcEEEecCC-CcCCchh--hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCchhhc
Confidence 54444455888899999999988 6777776 78889999999888863222100 0000000 00011112455
Q ss_pred CccCceeEEEecCcccccCCCccCccceeeecCCCCCCCcEEEeccc-----------CCceEEecccCCCCCCCCCccC
Q 037229 431 LKHLNVFSITLKSSYALQKPNSEHTRSLEVLPLAEMRQLDKLHIAFC-----------TRLQEFEIECPGRNLMDLTWLI 499 (577)
Q Consensus 431 L~~L~~L~l~~~~~~~l~~l~~~~l~~L~~~~l~~l~~L~~L~l~~~-----------~~l~~l~l~~~~~~l~~l~~l~ 499 (577)
+++|+.|+++.+....+.. +..+++|++|++++| ..++.+.++.+ .+..++.+.
T Consensus 220 ~~~L~~L~l~~n~l~~~~~-------------~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~ 284 (347)
T 4fmz_A 220 MTRLNSLKIGNNKITDLSP-------------LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSN--QISDISVLN 284 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG-------------GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS--CCCCCGGGG
T ss_pred CCcCCEEEccCCccCCCcc-------------hhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCC--ccCCChhhc
Confidence 5666666666554433322 233445555555443 23334444433 677778888
Q ss_pred CCCCcceEeeccCCCcceecCC----CcccEEecCCcccccccccCCCCCCCcceEeeecCC
Q 037229 500 FAPNFRKIDINQSSHMEEIICI----DRLRKVSGGYKKILKRIYPDVLPLKNLKGITVSSCP 557 (577)
Q Consensus 500 ~l~~L~~L~l~~~~~~~~~~~~----~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~ 557 (577)
.+++|+.|++++|......+.. ++|+.|++++|+ +..++. ...+++|++|++++|+
T Consensus 285 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 285 NLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp GCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSSCC-
T ss_pred CCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccccC-hhhhhccceeehhhhc
Confidence 9999999999999865443322 999999999987 666655 5678999999998874
No 12
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.84 E-value=7.7e-21 Score=188.85 Aligned_cols=245 Identities=16% Similarity=0.178 Sum_probs=195.0
Q ss_pred CeeEEEEecCCCCC---CcC-CCCCCCccEEeCcc-CCCC-CcchhhcCCCCcccEEEccCCCCCc-ccchhhhcCcCCC
Q 037229 277 GTRRVSLKENKIGD---LWE-TPTSPQLLTLFLNI-NPLS-MIGGDLFQFKPCLKVLNLSNSPCLE-KLPSRISRLVSLQ 349 (577)
Q Consensus 277 ~~r~l~l~~~~~~~---l~~-~~~~~~Lr~L~l~~-~~~~-~~~~~~~~~l~~L~~L~L~~~~~l~-~lp~~i~~l~~L~ 349 (577)
.++.+.+.++.+.. +|. ...+++|++|++.+ |.+. .+|.. +..+++|++|++++| .+. .+|..++++++|+
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHT-NVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEE-CCEEECCGGGGGCTTCC
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCC-eeCCcCCHHHhCCCCCC
Confidence 38899999998874 443 47899999999995 7655 55555 889999999999999 887 7788999999999
Q ss_pred EEeccCCCCC-cccccccCCCcCcEeccccccccc-ccchHHhcCCC-CCcEEEeeeecCcccccccccCCccCcccccc
Q 037229 350 HLDLSSSGIL-ELPKELGFLGNLACLNLENTSSHG-TITRQLRSNFS-KPQVLRMFRFYGKAQYMKADSLPFGGSEFLVE 426 (577)
Q Consensus 350 ~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~-~lp~~~i~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (577)
+|++++|.+. .+|..++.+++|++|++++| .+. .+|.. +++++ +|++|++.+|. .....+.
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~-l~~l~~~L~~L~L~~N~--------------l~~~~~~ 192 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGN-RISGAIPDS-YGSFSKLFTSMTISRNR--------------LTGKIPP 192 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSS-CCEEECCGG-GGCCCTTCCEEECCSSE--------------EEEECCG
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCC-cccCcCCHH-HhhhhhcCcEEECcCCe--------------eeccCCh
Confidence 9999999988 78889999999999999999 555 78887 88998 99999999987 3345566
Q ss_pred cccCCccCceeEEEecCcccccCCCccCccceeeecCCCCCCCcEEEecccCCceEEecccCCCCCC-CCCccCCCCCcc
Q 037229 427 QLCCLKHLNVFSITLKSSYALQKPNSEHTRSLEVLPLAEMRQLDKLHIAFCTRLQEFEIECPGRNLM-DLTWLIFAPNFR 505 (577)
Q Consensus 427 ~l~~L~~L~~L~l~~~~~~~l~~l~~~~l~~L~~~~l~~l~~L~~L~l~~~~~l~~l~l~~~~~~l~-~l~~l~~l~~L~ 505 (577)
.+..++ |+.|+++.+...... ...+..+++|+.|+++++. +. .++.+..+++|+
T Consensus 193 ~~~~l~-L~~L~Ls~N~l~~~~-----------~~~~~~l~~L~~L~L~~N~-------------l~~~~~~~~~l~~L~ 247 (313)
T 1ogq_A 193 TFANLN-LAFVDLSRNMLEGDA-----------SVLFGSDKNTQKIHLAKNS-------------LAFDLGKVGLSKNLN 247 (313)
T ss_dssp GGGGCC-CSEEECCSSEEEECC-----------GGGCCTTSCCSEEECCSSE-------------ECCBGGGCCCCTTCC
T ss_pred HHhCCc-ccEEECcCCcccCcC-----------CHHHhcCCCCCEEECCCCc-------------eeeecCcccccCCCC
Confidence 777776 999999876543211 1136678999999998863 32 233567889999
Q ss_pred eEeeccCCCcceecCC----CcccEEecCCcccccccccCCCCCCCcceEeeecCCCCCcCCCC
Q 037229 506 KIDINQSSHMEEIICI----DRLRKVSGGYKKILKRIYPDVLPLKNLKGITVSSCPNLKRLPLN 565 (577)
Q Consensus 506 ~L~l~~~~~~~~~~~~----~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~~L~~lp~~ 565 (577)
+|++++|.....++.. ++|+.|+++++.--..+|.. ..+++|+.+++.++|.+...|..
T Consensus 248 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p~~ 310 (313)
T 1ogq_A 248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPLP 310 (313)
T ss_dssp EEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTTSS
T ss_pred EEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCCCC
Confidence 9999999865444433 99999999998644466665 78999999999999988876654
No 13
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.84 E-value=1.2e-19 Score=190.91 Aligned_cols=250 Identities=18% Similarity=0.172 Sum_probs=175.8
Q ss_pred eeEEEEecCCCCCCcCCCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchhhhcCcCCCEEeccCCC
Q 037229 278 TRRVSLKENKIGDLWETPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSSSG 357 (577)
Q Consensus 278 ~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~ 357 (577)
++.+.+.++.+..++....+++|++|++++|.+..+++ +..+++|++|++++| .+..+++ ++++++|++|++++|.
T Consensus 48 l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L~~n~ 123 (466)
T 1o6v_A 48 VTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNN-QIADITP-LANLTNLTGLTLFNNQ 123 (466)
T ss_dssp CCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC
T ss_pred ccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCC-ccccChh-hcCCCCCCEEECCCCC
Confidence 89999999999999888899999999999999988887 899999999999999 9999886 9999999999999999
Q ss_pred CCcccccccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCccCcee
Q 037229 358 ILELPKELGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHLNVF 437 (577)
Q Consensus 358 i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L 437 (577)
+..+|. +.++++|++|++++| .+..+|. ++++++|++|++.++. .....+.++++|+.|
T Consensus 124 l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~~~-----------------~~~~~~~~l~~L~~L 182 (466)
T 1o6v_A 124 ITDIDP-LKNLTNLNRLELSSN-TISDISA--LSGLTSLQQLSFGNQV-----------------TDLKPLANLTTLERL 182 (466)
T ss_dssp CCCCGG-GTTCTTCSEEEEEEE-EECCCGG--GTTCTTCSEEEEEESC-----------------CCCGGGTTCTTCCEE
T ss_pred CCCChH-HcCCCCCCEEECCCC-ccCCChh--hccCCcccEeecCCcc-----------------cCchhhccCCCCCEE
Confidence 999986 899999999999999 7888876 8999999999986432 112235566666666
Q ss_pred EEEecCcccccCCCcc-Ccccee--------eecCCCCCCCcEEEecccC-----------CceEEecccCCCCCCCCCc
Q 037229 438 SITLKSSYALQKPNSE-HTRSLE--------VLPLAEMRQLDKLHIAFCT-----------RLQEFEIECPGRNLMDLTW 497 (577)
Q Consensus 438 ~l~~~~~~~l~~l~~~-~l~~L~--------~~~l~~l~~L~~L~l~~~~-----------~l~~l~l~~~~~~l~~l~~ 497 (577)
+++.+....+..+... .++.|. ...+..+++|+.|+++++. .++.+.+..+ .+..++.
T Consensus 183 ~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n--~l~~~~~ 260 (466)
T 1o6v_A 183 DISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANN--QISNLAP 260 (466)
T ss_dssp ECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSS--CCCCCGG
T ss_pred ECcCCcCCCChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCC--ccccchh
Confidence 6665543333221110 011111 0012335556666665542 2333333333 4555555
Q ss_pred cCCCCCcceEeeccCCCcceec-CC-CcccEEecCCcccccccccCCCCCCCcceEeeecC
Q 037229 498 LIFAPNFRKIDINQSSHMEEII-CI-DRLRKVSGGYKKILKRIYPDVLPLKNLKGITVSSC 556 (577)
Q Consensus 498 l~~l~~L~~L~l~~~~~~~~~~-~~-~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c 556 (577)
+..+++|+.|++++|....... .. ++|+.|++++|. +..++. ...+++|+.|++++|
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~L~~n 319 (466)
T 1o6v_A 261 LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQ-LEDISP-ISNLKNLTYLTLYFN 319 (466)
T ss_dssp GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSC-CSCCGG-GGGCTTCSEEECCSS
T ss_pred hhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCc-ccCchh-hcCCCCCCEEECcCC
Confidence 6667777777777765433221 11 777788777754 555443 456788888888766
No 14
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.84 E-value=9.3e-20 Score=190.44 Aligned_cols=143 Identities=15% Similarity=0.127 Sum_probs=119.1
Q ss_pred CeeEEEEecCCCCCCcCCCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchhhhcCcCCCEEeccCC
Q 037229 277 GTRRVSLKENKIGDLWETPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSSS 356 (577)
Q Consensus 277 ~~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~ 356 (577)
.++.+.++++.+..+|....+++|++|++++|.+..+| +..+++|++|++++| .++.+| ++.+++|++|++++|
T Consensus 43 ~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~L~~L~L~~N 116 (457)
T 3bz5_A 43 TLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSN-KLTNLD--VTPLTKLTYLNCDTN 116 (457)
T ss_dssp TCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSS-CCSCCC--CTTCTTCCEEECCSS
T ss_pred CCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCC-CCceee--cCCCCcCCEEECCCC
Confidence 38999999999998887788999999999999988875 788999999999999 898886 889999999999999
Q ss_pred CCCcccccccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCccCce
Q 037229 357 GILELPKELGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHLNV 436 (577)
Q Consensus 357 ~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~ 436 (577)
.++.+| ++.+++|++|++++| .+..+| ++++++|++|++.+|.. ... + .++.+++|+.
T Consensus 117 ~l~~l~--~~~l~~L~~L~l~~N-~l~~l~---l~~l~~L~~L~l~~n~~--------------~~~-~-~~~~l~~L~~ 174 (457)
T 3bz5_A 117 KLTKLD--VSQNPLLTYLNCARN-TLTEID---VSHNTQLTELDCHLNKK--------------ITK-L-DVTPQTQLTT 174 (457)
T ss_dssp CCSCCC--CTTCTTCCEEECTTS-CCSCCC---CTTCTTCCEEECTTCSC--------------CCC-C-CCTTCTTCCE
T ss_pred cCCeec--CCCCCcCCEEECCCC-ccceec---cccCCcCCEEECCCCCc--------------ccc-c-ccccCCcCCE
Confidence 999886 889999999999999 777775 77899999999998851 111 1 4666777777
Q ss_pred eEEEecCcccc
Q 037229 437 FSITLKSSYAL 447 (577)
Q Consensus 437 L~l~~~~~~~l 447 (577)
|+++.+....+
T Consensus 175 L~ls~n~l~~l 185 (457)
T 3bz5_A 175 LDCSFNKITEL 185 (457)
T ss_dssp EECCSSCCCCC
T ss_pred EECCCCcccee
Confidence 77776654443
No 15
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.84 E-value=4.8e-20 Score=182.68 Aligned_cols=237 Identities=16% Similarity=0.152 Sum_probs=185.2
Q ss_pred eEEEEecCCCCCCcCCCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCccc---chhhhcCcCCCEEeccC
Q 037229 279 RRVSLKENKIGDLWETPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKL---PSRISRLVSLQHLDLSS 355 (577)
Q Consensus 279 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l---p~~i~~l~~L~~L~L~~ 355 (577)
+.+...+..+..+|... .++|++|++.+|.+..+|..+|..+++|++|+++++ .+..+ |..+..+++|++|++++
T Consensus 10 ~~l~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGI-PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred CEEEcCCCCcccCCCCC-CCCCCEEECCCCccCccCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECCC
Confidence 35667777777777643 478999999999999999988899999999999999 88765 67788899999999999
Q ss_pred CCCCcccccccCCCcCcEecccccccccccch-HHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCccC
Q 037229 356 SGILELPKELGFLGNLACLNLENTSSHGTITR-QLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHL 434 (577)
Q Consensus 356 ~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 434 (577)
|.+..+|..+..+++|++|++++| .+..++. ..+.++++|++|++.+|. .....+..+..+++|
T Consensus 88 n~i~~l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~--------------l~~~~~~~~~~l~~L 152 (306)
T 2z66_A 88 NGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTH--------------TRVAFNGIFNGLSSL 152 (306)
T ss_dssp CSEEEEEEEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSC--------------CEECSTTTTTTCTTC
T ss_pred CccccChhhcCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCc--------------CCccchhhcccCcCC
Confidence 999999999999999999999999 7777764 338899999999999987 233445567888999
Q ss_pred ceeEEEecCccc--ccCCCccCccceeeecCCCCCCCcEEEecccCCceEEecccCCCCCCCC--CccCCCCCcceEeec
Q 037229 435 NVFSITLKSSYA--LQKPNSEHTRSLEVLPLAEMRQLDKLHIAFCTRLQEFEIECPGRNLMDL--TWLIFAPNFRKIDIN 510 (577)
Q Consensus 435 ~~L~l~~~~~~~--l~~l~~~~l~~L~~~~l~~l~~L~~L~l~~~~~l~~l~l~~~~~~l~~l--~~l~~l~~L~~L~l~ 510 (577)
+.|+++.+.... .+ ..+..+++|++|+++++ .+..+ .+++.+++|+.|+++
T Consensus 153 ~~L~l~~n~l~~~~~~------------~~~~~l~~L~~L~Ls~n-------------~l~~~~~~~~~~l~~L~~L~L~ 207 (306)
T 2z66_A 153 EVLKMAGNSFQENFLP------------DIFTELRNLTFLDLSQC-------------QLEQLSPTAFNSLSSLQVLNMS 207 (306)
T ss_dssp CEEECTTCEEGGGEEC------------SCCTTCTTCCEEECTTS-------------CCCEECTTTTTTCTTCCEEECT
T ss_pred CEEECCCCccccccch------------hHHhhCcCCCEEECCCC-------------CcCCcCHHHhcCCCCCCEEECC
Confidence 999998665432 11 13567889999999887 33332 256788999999999
Q ss_pred cCCCcceec---CC-CcccEEecCCcccccccccCCCCCC-CcceEeeecCC
Q 037229 511 QSSHMEEII---CI-DRLRKVSGGYKKILKRIYPDVLPLK-NLKGITVSSCP 557 (577)
Q Consensus 511 ~~~~~~~~~---~~-~~L~~L~l~~~~~l~~l~~~~~~~~-~L~~L~i~~c~ 557 (577)
+|....... .. ++|+.|+++++.-....+.....+| +|++|++++++
T Consensus 208 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 208 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp TSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred CCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 987543322 11 8999999999764444444555675 89999998754
No 16
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.83 E-value=1.2e-19 Score=186.24 Aligned_cols=252 Identities=12% Similarity=0.136 Sum_probs=163.6
Q ss_pred eeEEEEecCCCCCCcC--CCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchh-hhcCcCCCEEecc
Q 037229 278 TRRVSLKENKIGDLWE--TPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSR-ISRLVSLQHLDLS 354 (577)
Q Consensus 278 ~r~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~L~ 354 (577)
++.+.+.++.+..++. ...+++|++|++.+|.+..+++..|..+++|++|++++| .++.+|.. ++.+++|++|+++
T Consensus 71 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~ 149 (390)
T 3o6n_A 71 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMS 149 (390)
T ss_dssp CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred CcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECC
Confidence 8999999999887764 488999999999999999998888999999999999999 99999876 5899999999999
Q ss_pred CCCCCcccc-cccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccc--cCC
Q 037229 355 SSGILELPK-ELGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQL--CCL 431 (577)
Q Consensus 355 ~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~L 431 (577)
+|.+..++. .++.+++|++|++++| .+..++ ++.+++|++|++.++....+..+..+..+..+...+..+ ...
T Consensus 150 ~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~ 225 (390)
T 3o6n_A 150 NNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN 225 (390)
T ss_dssp SSCCCBCCTTTTSSCTTCCEEECCSS-CCSBCC---GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCC
T ss_pred CCccCccChhhccCCCCCCEEECCCC-cCCccc---cccccccceeecccccccccCCCCcceEEECCCCeeeecccccc
Confidence 999998765 4899999999999999 777775 568899999999888633222211111111111111110 112
Q ss_pred ccCceeEEEecCcccccCCCccCccceeeecCCCCCCCcEEEecccCCceEEecccCCCCCCCC--CccCCCCCcceEee
Q 037229 432 KHLNVFSITLKSSYALQKPNSEHTRSLEVLPLAEMRQLDKLHIAFCTRLQEFEIECPGRNLMDL--TWLIFAPNFRKIDI 509 (577)
Q Consensus 432 ~~L~~L~l~~~~~~~l~~l~~~~l~~L~~~~l~~l~~L~~L~l~~~~~l~~l~l~~~~~~l~~l--~~l~~l~~L~~L~l 509 (577)
++|+.|+++.+.....+ .+..+++|++|+++++. +... ..++.+++|+.|++
T Consensus 226 ~~L~~L~l~~n~l~~~~-------------~l~~l~~L~~L~Ls~n~-------------l~~~~~~~~~~l~~L~~L~L 279 (390)
T 3o6n_A 226 VELTILKLQHNNLTDTA-------------WLLNYPGLVEVDLSYNE-------------LEKIMYHPFVKMQRLERLYI 279 (390)
T ss_dssp SSCCEEECCSSCCCCCG-------------GGGGCTTCSEEECCSSC-------------CCEEESGGGTTCSSCCEEEC
T ss_pred ccccEEECCCCCCcccH-------------HHcCCCCccEEECCCCc-------------CCCcChhHccccccCCEEEC
Confidence 34555555544332221 13445666666666552 2211 13445555666666
Q ss_pred ccCCCcceecCC----CcccEEecCCcccccccccCCCCCCCcceEeeecCCCCCcCC
Q 037229 510 NQSSHMEEIICI----DRLRKVSGGYKKILKRIYPDVLPLKNLKGITVSSCPNLKRLP 563 (577)
Q Consensus 510 ~~~~~~~~~~~~----~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~~L~~lp 563 (577)
++|.... ++.. ++|+.|+++++ .+..++.....+++|++|++++| ++..+|
T Consensus 280 ~~n~l~~-~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N-~i~~~~ 334 (390)
T 3o6n_A 280 SNNRLVA-LNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHN-SIVTLK 334 (390)
T ss_dssp CSSCCCE-EECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSS-CCCCCC
T ss_pred CCCcCcc-cCcccCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCC-ccceeC
Confidence 5554322 2111 55666666554 34445444444555555555554 244444
No 17
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.83 E-value=1.5e-19 Score=181.27 Aligned_cols=248 Identities=20% Similarity=0.201 Sum_probs=177.0
Q ss_pred eeEEEEecCCCCCCcCCCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCccc-chhhhcCcCCCEEeccCC
Q 037229 278 TRRVSLKENKIGDLWETPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKL-PSRISRLVSLQHLDLSSS 356 (577)
Q Consensus 278 ~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~L~~~ 356 (577)
.+.+.+.++.+..+|... .++|++|++.+|.+..+++..|..+++|++|++++| .+..+ |..++.+++|++|++++|
T Consensus 35 l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 35 LRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp TTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEECCSS
T ss_pred CCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEECCCC
Confidence 678888888888887653 478999999999998888777999999999999999 89887 778999999999999999
Q ss_pred CCCcccccccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCccCce
Q 037229 357 GILELPKELGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHLNV 436 (577)
Q Consensus 357 ~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~ 436 (577)
.+..+|..+. ++|++|++++| .+..+|...+.++++|++|++.+|.... ....+..+..+ +|+.
T Consensus 113 ~l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~------------~~~~~~~~~~l-~L~~ 176 (332)
T 2ft3_A 113 HLVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLEN------------SGFEPGAFDGL-KLNY 176 (332)
T ss_dssp CCCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCCCBG------------GGSCTTSSCSC-CCSC
T ss_pred cCCccCcccc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCcccc------------CCCCcccccCC-ccCE
Confidence 9999998876 89999999999 7888887668999999999999987211 12334445555 6777
Q ss_pred eEEEecCcccccCCCccCcccee----------eecCCCCCCCcEEEecccCCceEEecccCCCCCCCCC--ccCCCCCc
Q 037229 437 FSITLKSSYALQKPNSEHTRSLE----------VLPLAEMRQLDKLHIAFCTRLQEFEIECPGRNLMDLT--WLIFAPNF 504 (577)
Q Consensus 437 L~l~~~~~~~l~~l~~~~l~~L~----------~~~l~~l~~L~~L~l~~~~~l~~l~l~~~~~~l~~l~--~l~~l~~L 504 (577)
|+++.+....++......++.|. ...+..+++|+.|+++++ .+..++ +++.+++|
T Consensus 177 L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N-------------~l~~~~~~~~~~l~~L 243 (332)
T 2ft3_A 177 LRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN-------------QIRMIENGSLSFLPTL 243 (332)
T ss_dssp CBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSS-------------CCCCCCTTGGGGCTTC
T ss_pred EECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC-------------cCCcCChhHhhCCCCC
Confidence 77776654443321111122221 012444556666666554 444433 46677888
Q ss_pred ceEeeccCCCcceecCC----CcccEEecCCcccccccccCCC-------CCCCcceEeeecCCC
Q 037229 505 RKIDINQSSHMEEIICI----DRLRKVSGGYKKILKRIYPDVL-------PLKNLKGITVSSCPN 558 (577)
Q Consensus 505 ~~L~l~~~~~~~~~~~~----~~L~~L~l~~~~~l~~l~~~~~-------~~~~L~~L~i~~c~~ 558 (577)
+.|++++|... .++.. ++|+.|+++++. ++.++.... .+++|+.|++.++|-
T Consensus 244 ~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~ 306 (332)
T 2ft3_A 244 RELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306 (332)
T ss_dssp CEEECCSSCCC-BCCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred CEEECCCCcCe-ecChhhhcCccCCEEECCCCC-CCccChhHccccccccccccccceEeecCcc
Confidence 88888877643 44332 778888888743 665554321 156778888877763
No 18
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=1.4e-19 Score=196.20 Aligned_cols=258 Identities=15% Similarity=0.174 Sum_probs=190.7
Q ss_pred eeEEEEecCCCCCCcC--CCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchh-hhcCcCCCEEecc
Q 037229 278 TRRVSLKENKIGDLWE--TPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSR-ISRLVSLQHLDLS 354 (577)
Q Consensus 278 ~r~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~L~ 354 (577)
++.+.+.++.+..++. ...+++|++|++.+|.+..+++..|..+++|++|+|++| .+..+|+. ++.+++|++|+|+
T Consensus 77 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls 155 (597)
T 3oja_B 77 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMS 155 (597)
T ss_dssp CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred CcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEee
Confidence 8999999999888764 488999999999999999999988999999999999999 99999876 5899999999999
Q ss_pred CCCCCcccc-cccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccc--cCC
Q 037229 355 SSGILELPK-ELGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQL--CCL 431 (577)
Q Consensus 355 ~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~L 431 (577)
+|.+..+|. .++.+++|++|++++| .+..++ ++.+++|++|++.+|...++..+..+..+..+...+..+ ...
T Consensus 156 ~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~---~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~ 231 (597)
T 3oja_B 156 NNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN 231 (597)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECTTS-CCSBCC---GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCC
T ss_pred CCcCCCCChhhhhcCCcCcEEECcCC-CCCCcC---hhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccC
Confidence 999988766 5999999999999999 777776 457888999998888754443332222222121111111 112
Q ss_pred ccCceeEEEecCcccccCCCcc-Ccccee----------eecCCCCCCCcEEEecccCCceEEecccCCCCCCCCC-ccC
Q 037229 432 KHLNVFSITLKSSYALQKPNSE-HTRSLE----------VLPLAEMRQLDKLHIAFCTRLQEFEIECPGRNLMDLT-WLI 499 (577)
Q Consensus 432 ~~L~~L~l~~~~~~~l~~l~~~-~l~~L~----------~~~l~~l~~L~~L~l~~~~~l~~l~l~~~~~~l~~l~-~l~ 499 (577)
++|+.|+++.+.......+... .++.|. ...+..+++|+.|+++++ .+..++ .++
T Consensus 232 ~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-------------~l~~l~~~~~ 298 (597)
T 3oja_B 232 VELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-------------RLVALNLYGQ 298 (597)
T ss_dssp SCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-------------CCCEEECSSS
T ss_pred CCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-------------CCCCCCcccc
Confidence 4677777776655443221110 022222 124567788888888876 444444 456
Q ss_pred CCCCcceEeeccCCCcceecCC----CcccEEecCCcccccccccCCCCCCCcceEeeecCC
Q 037229 500 FAPNFRKIDINQSSHMEEIICI----DRLRKVSGGYKKILKRIYPDVLPLKNLKGITVSSCP 557 (577)
Q Consensus 500 ~l~~L~~L~l~~~~~~~~~~~~----~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~ 557 (577)
.+|+|+.|+|++|... .++.. ++|+.|+|+++. +..++ ...+++|++|+++++|
T Consensus 299 ~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~-l~~~~--~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 299 PIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHND 356 (597)
T ss_dssp CCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSC
T ss_pred cCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCC-CCCcC--hhhcCCCCEEEeeCCC
Confidence 7999999999999754 44433 999999999976 66664 5678999999999865
No 19
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.82 E-value=2.4e-19 Score=187.74 Aligned_cols=237 Identities=16% Similarity=0.161 Sum_probs=188.0
Q ss_pred eeEEEEecCCCCCCcCCCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccc-hhhhcCcCCCEEeccCC
Q 037229 278 TRRVSLKENKIGDLWETPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLP-SRISRLVSLQHLDLSSS 356 (577)
Q Consensus 278 ~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~L~~~ 356 (577)
.+.+...+..+..+|... .+++++|++++|.+..+++..|..+++|++|+|++| .+..++ ..+..+++|++|+|++|
T Consensus 56 ~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGI-PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp SCEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred CcEEEECCCCcCccCCCC-CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCC
Confidence 456677777777777542 368999999999998888777999999999999999 998875 67899999999999999
Q ss_pred CCCccccc-ccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCccCc
Q 037229 357 GILELPKE-LGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHLN 435 (577)
Q Consensus 357 ~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 435 (577)
.+..+|.. +..+++|++|++++| .+..+|...+.++++|++|++.+|.. ........+..+++|+
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~-------------l~~i~~~~~~~l~~L~ 199 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKK-------------LEYISEGAFEGLFNLK 199 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTT-------------CCEECTTTTTTCTTCC
T ss_pred cCCccChhhhcccCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCC-------------ccccChhhccCCCCCC
Confidence 99998876 888999999999999 78888876689999999999998761 1222334578899999
Q ss_pred eeEEEecCcccccCCCccCccceeeecCCCCCCCcEEEecccCCceEEecccCCCCCCCC--CccCCCCCcceEeeccCC
Q 037229 436 VFSITLKSSYALQKPNSEHTRSLEVLPLAEMRQLDKLHIAFCTRLQEFEIECPGRNLMDL--TWLIFAPNFRKIDINQSS 513 (577)
Q Consensus 436 ~L~l~~~~~~~l~~l~~~~l~~L~~~~l~~l~~L~~L~l~~~~~l~~l~l~~~~~~l~~l--~~l~~l~~L~~L~l~~~~ 513 (577)
.|+++.+....++. +..+++|+.|+++++ .+..+ ..+..+++|+.|++++|.
T Consensus 200 ~L~L~~n~l~~~~~-------------~~~l~~L~~L~Ls~N-------------~l~~~~~~~~~~l~~L~~L~L~~n~ 253 (452)
T 3zyi_A 200 YLNLGMCNIKDMPN-------------LTPLVGLEELEMSGN-------------HFPEIRPGSFHGLSSLKKLWVMNSQ 253 (452)
T ss_dssp EEECTTSCCSSCCC-------------CTTCTTCCEEECTTS-------------CCSEECGGGGTTCTTCCEEECTTSC
T ss_pred EEECCCCccccccc-------------ccccccccEEECcCC-------------cCcccCcccccCccCCCEEEeCCCc
Confidence 99998776554432 566889999999886 33332 257789999999999887
Q ss_pred CcceecCC----CcccEEecCCcccccccccCC-CCCCCcceEeeecCC
Q 037229 514 HMEEIICI----DRLRKVSGGYKKILKRIYPDV-LPLKNLKGITVSSCP 557 (577)
Q Consensus 514 ~~~~~~~~----~~L~~L~l~~~~~l~~l~~~~-~~~~~L~~L~i~~c~ 557 (577)
.....+.. ++|+.|+|+++ .+..++... ..+++|+.|+++++|
T Consensus 254 l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 254 VSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 54433322 89999999986 577776543 468999999998754
No 20
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.82 E-value=2.9e-19 Score=186.43 Aligned_cols=237 Identities=18% Similarity=0.182 Sum_probs=186.8
Q ss_pred eeEEEEecCCCCCCcCCCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccc-hhhhcCcCCCEEeccCC
Q 037229 278 TRRVSLKENKIGDLWETPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLP-SRISRLVSLQHLDLSSS 356 (577)
Q Consensus 278 ~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~L~~~ 356 (577)
.+.+...+..+..+|... .++++.|++++|.+..++...|..+++|++|+|++| .+..++ ..+..+++|++|+|++|
T Consensus 45 ~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGI-STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp SCEEECCSCCCSSCCSCC-CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCEEEeCCCCcCcCCCCC-CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCCC
Confidence 456777777788777643 378999999999998888777999999999999999 898875 57899999999999999
Q ss_pred CCCcccc-cccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCccCc
Q 037229 357 GILELPK-ELGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHLN 435 (577)
Q Consensus 357 ~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 435 (577)
.++.+|. .+..+++|++|++++| .+..+|...+.++++|++|++.+|.. ........+.++++|+
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~-------------l~~i~~~~~~~l~~L~ 188 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKR-------------LSYISEGAFEGLSNLR 188 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTT-------------CCEECTTTTTTCSSCC
T ss_pred cCCeeCHhHhhccccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCC-------------cceeCcchhhcccccC
Confidence 9999987 4899999999999999 78888876689999999999998761 1223334578899999
Q ss_pred eeEEEecCcccccCCCccCccceeeecCCCCCCCcEEEecccCCceEEecccCCCCCCCC--CccCCCCCcceEeeccCC
Q 037229 436 VFSITLKSSYALQKPNSEHTRSLEVLPLAEMRQLDKLHIAFCTRLQEFEIECPGRNLMDL--TWLIFAPNFRKIDINQSS 513 (577)
Q Consensus 436 ~L~l~~~~~~~l~~l~~~~l~~L~~~~l~~l~~L~~L~l~~~~~l~~l~l~~~~~~l~~l--~~l~~l~~L~~L~l~~~~ 513 (577)
.|+++.+....++. +..+++|+.|+++++. +..+ ..+..+++|+.|++++|.
T Consensus 189 ~L~L~~n~l~~~~~-------------~~~l~~L~~L~Ls~N~-------------l~~~~~~~~~~l~~L~~L~L~~n~ 242 (440)
T 3zyj_A 189 YLNLAMCNLREIPN-------------LTPLIKLDELDLSGNH-------------LSAIRPGSFQGLMHLQKLWMIQSQ 242 (440)
T ss_dssp EEECTTSCCSSCCC-------------CTTCSSCCEEECTTSC-------------CCEECTTTTTTCTTCCEEECTTCC
T ss_pred eecCCCCcCccccc-------------cCCCcccCEEECCCCc-------------cCccChhhhccCccCCEEECCCCc
Confidence 99998776554432 5667889999998872 3322 256788999999999887
Q ss_pred CcceecCC----CcccEEecCCcccccccccCC-CCCCCcceEeeecCC
Q 037229 514 HMEEIICI----DRLRKVSGGYKKILKRIYPDV-LPLKNLKGITVSSCP 557 (577)
Q Consensus 514 ~~~~~~~~----~~L~~L~l~~~~~l~~l~~~~-~~~~~L~~L~i~~c~ 557 (577)
........ ++|+.|+|+++ .++.++... ..+++|+.|+++++|
T Consensus 243 l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 243 IQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred eeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence 54333222 89999999986 577776643 468999999998654
No 21
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.82 E-value=4.2e-20 Score=198.60 Aligned_cols=129 Identities=24% Similarity=0.266 Sum_probs=113.5
Q ss_pred cCeeEEEEecCCCCCCcC--CCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchh-hhcCcCCCEEe
Q 037229 276 EGTRRVSLKENKIGDLWE--TPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSR-ISRLVSLQHLD 352 (577)
Q Consensus 276 ~~~r~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~ 352 (577)
..++++.++++.+..++. ...+++|++|++++|.+..+++..|..+++|++|++++| .+..+|+. ++.+++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-ccCccCHHHhccCCCCcEEE
Confidence 348999999999887643 488999999999999998888777999999999999999 99988765 99999999999
Q ss_pred ccCCCCCc--ccccccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeec
Q 037229 353 LSSSGILE--LPKELGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFY 405 (577)
Q Consensus 353 L~~~~i~~--lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 405 (577)
+++|.+.. .|..++++++|++|++++|..+..+|...++++++|++|++.+|.
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~ 159 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS 159 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCc
Confidence 99999985 467899999999999999965788885448999999999999987
No 22
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.82 E-value=1.7e-19 Score=189.15 Aligned_cols=127 Identities=20% Similarity=0.187 Sum_probs=103.1
Q ss_pred CeeEEEEecCCCCCCcC--CCCCCCccEEeCccCCCC-CcchhhcCCCCcccEEEccCCCCCccc-chhhhcCcCCCEEe
Q 037229 277 GTRRVSLKENKIGDLWE--TPTSPQLLTLFLNINPLS-MIGGDLFQFKPCLKVLNLSNSPCLEKL-PSRISRLVSLQHLD 352 (577)
Q Consensus 277 ~~r~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~-~~~~~~~~~l~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~ 352 (577)
.++++.++++.+..++. ...+++|++|++++|.+. .+++..|..+++|++|++++| .+..+ |..++++++|++|+
T Consensus 31 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-QFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC-TTCEECTTTTTTCTTCCEEE
T ss_pred ccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC-ccCccChhhccCcccCCEEe
Confidence 48899999888877633 478889999999998864 666666888999999999999 88766 77889999999999
Q ss_pred ccCCCCCc-cccc--ccCCCcCcEeccccccccccc-chHHhcCCCCCcEEEeeeec
Q 037229 353 LSSSGILE-LPKE--LGFLGNLACLNLENTSSHGTI-TRQLRSNFSKPQVLRMFRFY 405 (577)
Q Consensus 353 L~~~~i~~-lp~~--i~~L~~L~~L~l~~~~~l~~l-p~~~i~~l~~L~~L~l~~~~ 405 (577)
+++|.+.. .|.. ++++++|++|++++| .+..+ |...++++++|++|++.+|.
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n~ 165 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFNK 165 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTTCC
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCCCCc
Confidence 99998875 4444 888999999999998 56665 54447889999999998886
No 23
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.82 E-value=4.8e-19 Score=197.02 Aligned_cols=267 Identities=12% Similarity=0.134 Sum_probs=181.8
Q ss_pred CeeEEEEecCCCCC------------------CcCC-C--CCCCccEEeCccCC-CCCcchhhcCCCCcccEEEccCCCC
Q 037229 277 GTRRVSLKENKIGD------------------LWET-P--TSPQLLTLFLNINP-LSMIGGDLFQFKPCLKVLNLSNSPC 334 (577)
Q Consensus 277 ~~r~l~l~~~~~~~------------------l~~~-~--~~~~Lr~L~l~~~~-~~~~~~~~~~~l~~L~~L~L~~~~~ 334 (577)
.++.+.++++.+.. +|.. . .+++|++|++++|. ...+|.. +.++++|++|++++| .
T Consensus 449 ~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~~L~Ls~N-~ 526 (876)
T 4ecn_A 449 KLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNIACN-R 526 (876)
T ss_dssp TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGGCSSCCEEECTTC-T
T ss_pred CCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH-HhCCCCCCEEECcCC-C
Confidence 48999999999887 7765 3 79999999999998 4556654 889999999999999 6
Q ss_pred -Ccc--cchhhhcCc-------CCCEEeccCCCCCcccc--cccCCCcCcEecccccccccccchHHhcCCCCCcEEEee
Q 037229 335 -LEK--LPSRISRLV-------SLQHLDLSSSGILELPK--ELGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMF 402 (577)
Q Consensus 335 -l~~--lp~~i~~l~-------~L~~L~L~~~~i~~lp~--~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~ 402 (577)
++. +|..++++. +|++|+|++|.+..+|. .++++++|++|++++| .+..+| . ++++++|++|+++
T Consensus 527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N-~l~~lp-~-~~~L~~L~~L~Ls 603 (876)
T 4ecn_A 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN-KVRHLE-A-FGTNVKLTDLKLD 603 (876)
T ss_dssp TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTS-CCCBCC-C-CCTTSEESEEECC
T ss_pred CcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCC-Ccccch-h-hcCCCcceEEECc
Confidence 774 888888776 99999999999999998 8999999999999999 677888 4 8999999999999
Q ss_pred eecCcccccccccCCccCcccccccccCCcc-CceeEEEecCcccccCCCcc----------------------------
Q 037229 403 RFYGKAQYMKADSLPFGGSEFLVEQLCCLKH-LNVFSITLKSSYALQKPNSE---------------------------- 453 (577)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~-L~~L~l~~~~~~~l~~l~~~---------------------------- 453 (577)
+|... ..+..+..+++ |+.|+++.+....++.....
T Consensus 604 ~N~l~---------------~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~ 668 (876)
T 4ecn_A 604 YNQIE---------------EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMD 668 (876)
T ss_dssp SSCCS---------------CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTT
T ss_pred CCccc---------------cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhc
Confidence 88722 22333444444 44444443332222211000
Q ss_pred --CccceeeecC-------------CCCCCCcEEEecccC--------------------CceEEecccCCCCCCCCC-c
Q 037229 454 --HTRSLEVLPL-------------AEMRQLDKLHIAFCT--------------------RLQEFEIECPGRNLMDLT-W 497 (577)
Q Consensus 454 --~l~~L~~~~l-------------~~l~~L~~L~l~~~~--------------------~l~~l~l~~~~~~l~~l~-~ 497 (577)
...+|..+.+ ..+++|+.|+++++. .++.+.++.+ .+..+| .
T Consensus 669 ~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N--~L~~lp~~ 746 (876)
T 4ecn_A 669 DYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN--KLTSLSDD 746 (876)
T ss_dssp TCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSS--CCCCCCGG
T ss_pred cccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCC--CCccchHH
Confidence 0112221111 134566666666532 3444444444 555555 4
Q ss_pred cC--CCCCcceEeeccCCCcceecCC----CcccEEecCC------cccccccccCCCCCCCcceEeeecCCCCCcCCCC
Q 037229 498 LI--FAPNFRKIDINQSSHMEEIICI----DRLRKVSGGY------KKILKRIYPDVLPLKNLKGITVSSCPNLKRLPLN 565 (577)
Q Consensus 498 l~--~l~~L~~L~l~~~~~~~~~~~~----~~L~~L~l~~------~~~l~~l~~~~~~~~~L~~L~i~~c~~L~~lp~~ 565 (577)
+. .+++|+.|+|++|.... ++.. ++|+.|+|++ +.-...+|.....+++|+.|++++| ++..+|..
T Consensus 747 l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N-~L~~Ip~~ 824 (876)
T 4ecn_A 747 FRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN-DIRKVDEK 824 (876)
T ss_dssp GSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSC
T ss_pred hhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC-CCCccCHh
Confidence 44 77888888888776443 3322 7888888876 3334456666667888888888887 44778776
Q ss_pred CC
Q 037229 566 SN 567 (577)
Q Consensus 566 ~~ 567 (577)
..
T Consensus 825 l~ 826 (876)
T 4ecn_A 825 LT 826 (876)
T ss_dssp CC
T ss_pred hc
Confidence 44
No 24
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.81 E-value=3.4e-19 Score=188.00 Aligned_cols=246 Identities=18% Similarity=0.185 Sum_probs=176.3
Q ss_pred eEEEEecCCCCCCcCCCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCccc-chhhhcCcCCCEEeccCCC
Q 037229 279 RRVSLKENKIGDLWETPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKL-PSRISRLVSLQHLDLSSSG 357 (577)
Q Consensus 279 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~L~~~~ 357 (577)
+.+...+..+..+|... .+++++|++++|.+..+++..|..+++|++|+|++| .+..+ |..++++++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGI-PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp TEEECCSCCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCcCCCCC-CCCCcEEECCCCccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCc
Confidence 45666677777777643 468999999999999988777999999999999999 99887 7789999999999999999
Q ss_pred CCccccc-ccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCccCce
Q 037229 358 ILELPKE-LGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHLNV 436 (577)
Q Consensus 358 i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~ 436 (577)
+..+|.. +.++++|++|++++| .+..++...+.++++|++|++.+|. .....+..+..+++|+.
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~l~~n~--------------l~~~~~~~~~~l~~L~~ 156 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISEN-KIVILLDYMFQDLYNLKSLEVGDND--------------LVYISHRAFSGLNSLEQ 156 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEEECCTT--------------CCEECTTSSTTCTTCCE
T ss_pred CCccCcccccCCCCCCEEECCCC-ccccCChhHccccccCCEEECCCCc--------------cceeChhhccCCCCCCE
Confidence 9999876 789999999999999 6777655448999999999999987 23344567889999999
Q ss_pred eEEEecCcccccCCCccCccceeeecCCCCCCCcEEEecccCC-------------ceEEecc-cCCCCCCCCC-ccCCC
Q 037229 437 FSITLKSSYALQKPNSEHTRSLEVLPLAEMRQLDKLHIAFCTR-------------LQEFEIE-CPGRNLMDLT-WLIFA 501 (577)
Q Consensus 437 L~l~~~~~~~l~~l~~~~l~~L~~~~l~~l~~L~~L~l~~~~~-------------l~~l~l~-~~~~~l~~l~-~l~~l 501 (577)
|+++.+....+.. ..+..+++|+.|++.++.. ++.+.+. |+ .+..++ .....
T Consensus 157 L~l~~n~l~~~~~-----------~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~~~~~ 223 (477)
T 2id5_A 157 LTLEKCNLTSIPT-----------EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP--YLDTMTPNCLYG 223 (477)
T ss_dssp EEEESCCCSSCCH-----------HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCT--TCCEECTTTTTT
T ss_pred EECCCCcCcccCh-----------hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCc--cccccCcccccC
Confidence 9999775443221 1245678899999887632 2222221 11 111111 12223
Q ss_pred CCcceEeeccCCCcceecC----C-CcccEEecCCccccccccc-CCCCCCCcceEeeecC
Q 037229 502 PNFRKIDINQSSHMEEIIC----I-DRLRKVSGGYKKILKRIYP-DVLPLKNLKGITVSSC 556 (577)
Q Consensus 502 ~~L~~L~l~~~~~~~~~~~----~-~~L~~L~l~~~~~l~~l~~-~~~~~~~L~~L~i~~c 556 (577)
.+|+.|++++|... .++. . ++|+.|+|+++. +..++. ....+++|++|+++++
T Consensus 224 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n 282 (477)
T 2id5_A 224 LNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGG 282 (477)
T ss_dssp CCCSEEEEESSCCC-SCCHHHHTTCTTCCEEECCSSC-CCEECTTSCTTCTTCCEEECCSS
T ss_pred ccccEEECcCCccc-ccCHHHhcCccccCeeECCCCc-CCccChhhccccccCCEEECCCC
Confidence 35666666655432 2221 1 677777777754 555543 2446778888877654
No 25
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.81 E-value=1.3e-19 Score=183.44 Aligned_cols=247 Identities=19% Similarity=0.203 Sum_probs=140.4
Q ss_pred EEEecCCCCCCcCCCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCccc-chhhhcCcCCCEEeccCCCCC
Q 037229 281 VSLKENKIGDLWETPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKL-PSRISRLVSLQHLDLSSSGIL 359 (577)
Q Consensus 281 l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~L~~~~i~ 359 (577)
....++.+..+|.. -.++|++|++++|.+..++...+..+++|++|++++| .++.+ |..++.+++|++|++++|.++
T Consensus 36 c~~~~~~l~~iP~~-~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 113 (353)
T 2z80_A 36 CKGSSGSLNSIPSG-LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNYLS 113 (353)
T ss_dssp EECCSTTCSSCCTT-CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred eeCCCCCccccccc-ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCcCC
Confidence 44455556655543 2246777777777766666655667777777777777 66665 345666777777777777777
Q ss_pred ccccc-ccCCCcCcEecccccccccccch-HHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCccCcee
Q 037229 360 ELPKE-LGFLGNLACLNLENTSSHGTITR-QLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHLNVF 437 (577)
Q Consensus 360 ~lp~~-i~~L~~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L 437 (577)
.+|.. ++++++|++|++++| .+..+|. ..+.++++|++|++.+|.. ........++.+++|+.|
T Consensus 114 ~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~-------------~~~~~~~~~~~l~~L~~L 179 (353)
T 2z80_A 114 NLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDT-------------FTKIQRKDFAGLTFLEEL 179 (353)
T ss_dssp SCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSS-------------CCEECTTTTTTCCEEEEE
T ss_pred cCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCcc-------------ccccCHHHccCCCCCCEE
Confidence 66665 666777777777776 5666665 3366677777777776630 122223455666666666
Q ss_pred EEEecCcccccCCCccCccceeeecCCCCCCCcEEEecccC-------------CceEEecccCCCCCCCC-----CccC
Q 037229 438 SITLKSSYALQKPNSEHTRSLEVLPLAEMRQLDKLHIAFCT-------------RLQEFEIECPGRNLMDL-----TWLI 499 (577)
Q Consensus 438 ~l~~~~~~~l~~l~~~~l~~L~~~~l~~l~~L~~L~l~~~~-------------~l~~l~l~~~~~~l~~l-----~~l~ 499 (577)
+++.+....... ..+..+++|++|+++++. .++.+.+..+ .+... +...
T Consensus 180 ~l~~n~l~~~~~-----------~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n--~l~~~~~~~l~~~~ 246 (353)
T 2z80_A 180 EIDASDLQSYEP-----------KSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDT--DLDTFHFSELSTGE 246 (353)
T ss_dssp EEEETTCCEECT-----------TTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESC--BCTTCCCC------
T ss_pred ECCCCCcCccCH-----------HHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCC--cccccccccccccc
Confidence 666554332211 012334444444444321 1111111111 22221 1122
Q ss_pred CCCCcceEeeccCCCcce----ec----CCCcccEEecCCcccccccccCC-CCCCCcceEeeecCC
Q 037229 500 FAPNFRKIDINQSSHMEE----II----CIDRLRKVSGGYKKILKRIYPDV-LPLKNLKGITVSSCP 557 (577)
Q Consensus 500 ~l~~L~~L~l~~~~~~~~----~~----~~~~L~~L~l~~~~~l~~l~~~~-~~~~~L~~L~i~~c~ 557 (577)
..+.++.++++++..... ++ ..++|+.|+++++ .++.++... ..+++|++|+++++|
T Consensus 247 ~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 247 TNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCC
Confidence 345566666665543221 11 1178999999886 477787764 678899999998775
No 26
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.81 E-value=8.2e-19 Score=184.43 Aligned_cols=253 Identities=17% Similarity=0.205 Sum_probs=150.7
Q ss_pred CeeEEEEecCCCCCCcCCCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchhhhcCcCCCEEeccCC
Q 037229 277 GTRRVSLKENKIGDLWETPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSSS 356 (577)
Q Consensus 277 ~~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~ 356 (577)
.++.+.++++.+..++....+++|++|.+.+|.+..+++ +..+++|++|++++| .+..+|. ++.+++|++|++++|
T Consensus 69 ~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~~n 144 (466)
T 1o6v_A 69 NLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN-QITDIDP-LKNLTNLNRLELSSN 144 (466)
T ss_dssp TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCSEEEEEEE
T ss_pred CCCEEECCCCccCCchhhhccccCCEEECCCCccccChh--hcCCCCCCEEECCCC-CCCCChH-HcCCCCCCEEECCCC
Confidence 388999999998888878889999999999999888877 888999999999999 8888875 888999999999988
Q ss_pred CCCcccccccCCCcCcEecc---------------------cccccccccchHHhcCCCCCcEEEeeeecCccccccccc
Q 037229 357 GILELPKELGFLGNLACLNL---------------------ENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADS 415 (577)
Q Consensus 357 ~i~~lp~~i~~L~~L~~L~l---------------------~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~ 415 (577)
.+..+|. ++.+++|++|++ ++| .+..++. +.++++|++|++.+|...
T Consensus 145 ~l~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~-------- 212 (466)
T 1o6v_A 145 TISDISA-LSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN-KVSDISV--LAKLTNLESLIATNNQIS-------- 212 (466)
T ss_dssp EECCCGG-GTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECCSSCCC--------
T ss_pred ccCCChh-hccCCcccEeecCCcccCchhhccCCCCCEEECcCC-cCCCChh--hccCCCCCEEEecCCccc--------
Confidence 7777653 555555555554 444 3333333 444444444444444311
Q ss_pred CCccCcccccccccCCccCceeEEEecCcccccCCCcc-Ccccee--------eecCCCCCCCcEEEecccC--------
Q 037229 416 LPFGGSEFLVEQLCCLKHLNVFSITLKSSYALQKPNSE-HTRSLE--------VLPLAEMRQLDKLHIAFCT-------- 478 (577)
Q Consensus 416 ~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~l~~~-~l~~L~--------~~~l~~l~~L~~L~l~~~~-------- 478 (577)
....++.+++|+.|+++.+....++.+... .++.|. ...+..+++|+.|+++++.
T Consensus 213 --------~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 284 (466)
T 1o6v_A 213 --------DITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLA 284 (466)
T ss_dssp --------CCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGT
T ss_pred --------ccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCcccccc
Confidence 111134455555555554433322211100 011111 0013344555555555432
Q ss_pred ---CceEEecccCCCCCCCCCccCCCCCcceEeeccCCCcceecCC--CcccEEecCCcccccccccCCCCCCCcceEee
Q 037229 479 ---RLQEFEIECPGRNLMDLTWLIFAPNFRKIDINQSSHMEEIICI--DRLRKVSGGYKKILKRIYPDVLPLKNLKGITV 553 (577)
Q Consensus 479 ---~l~~l~l~~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i 553 (577)
.++.+.+..+ .+..++.++.+++|+.|++++|......+.. ++|+.|++++|. +..++ ....+++|+.|++
T Consensus 285 ~l~~L~~L~L~~n--~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l 360 (466)
T 1o6v_A 285 GLTALTNLELNEN--QLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNK-VSDVS-SLANLTNINWLSA 360 (466)
T ss_dssp TCTTCSEEECCSS--CCSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTCTTCCEEEC
T ss_pred CCCccCeEEcCCC--cccCchhhcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCc-cCCch-hhccCCCCCEEeC
Confidence 2333333333 4555555566677777777766533322111 777777777653 55443 3446777777777
Q ss_pred ecCC
Q 037229 554 SSCP 557 (577)
Q Consensus 554 ~~c~ 557 (577)
++|+
T Consensus 361 ~~n~ 364 (466)
T 1o6v_A 361 GHNQ 364 (466)
T ss_dssp CSSC
T ss_pred CCCc
Confidence 7663
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.81 E-value=1e-18 Score=183.14 Aligned_cols=148 Identities=14% Similarity=0.156 Sum_probs=116.4
Q ss_pred eEEEEecCCCCCCcCCCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCc-cc-chhhhcCcCCCEEeccCC
Q 037229 279 RRVSLKENKIGDLWETPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLE-KL-PSRISRLVSLQHLDLSSS 356 (577)
Q Consensus 279 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~-~l-p~~i~~l~~L~~L~L~~~ 356 (577)
+.+...+..+..+|. -.++|++|++++|.+..+++..|..+++|++|+++++ .+. .+ |..++.+++|++|+|++|
T Consensus 13 ~~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 13 YNAICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQ-TPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp TEEECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCC-STTCEECTTTTTTCTTCCEEECTTC
T ss_pred cccCcCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCC-cccceECcccccccccCCEEeCCCC
Confidence 346666777888887 3488999999999998887777999999999999999 775 55 557999999999999999
Q ss_pred CCCcc-cccccCCCcCcEecccccccccc-cc-hHHhcCCCCCcEEEeeeecCcccccccccCCccCccccccc-ccCCc
Q 037229 357 GILEL-PKELGFLGNLACLNLENTSSHGT-IT-RQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQ-LCCLK 432 (577)
Q Consensus 357 ~i~~l-p~~i~~L~~L~~L~l~~~~~l~~-lp-~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~L~ 432 (577)
.+..+ |..++++++|++|++++| .+.. +| ...++++++|++|++.+|.. ....+.. +..++
T Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n~l--------------~~~~~~~~~~~l~ 154 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVLTLTQC-NLDGAVLSGNFFKPLTSLEMLVLRDNNI--------------KKIQPASFFLNMR 154 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTS-CCBTHHHHSSTTTTCTTCCEEECCSSBC--------------CSCCCCGGGGGCT
T ss_pred ccCccChhhccCcccCCEEeCCCC-CCCccccCcccccCcccCCEEECCCCcc--------------CccCcccccCCCC
Confidence 99876 678999999999999999 6654 23 23378999999999999972 2222232 56666
Q ss_pred cCceeEEEecCc
Q 037229 433 HLNVFSITLKSS 444 (577)
Q Consensus 433 ~L~~L~l~~~~~ 444 (577)
+|+.|+++.+..
T Consensus 155 ~L~~L~L~~n~l 166 (455)
T 3v47_A 155 RFHVLDLTFNKV 166 (455)
T ss_dssp TCCEEECTTCCB
T ss_pred cccEEeCCCCcc
Confidence 666666665543
No 28
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.81 E-value=4e-19 Score=193.37 Aligned_cols=272 Identities=15% Similarity=0.106 Sum_probs=178.4
Q ss_pred CeeEEEEecCCCCCCcC--CCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCccc-chhhhcCcCCCEEec
Q 037229 277 GTRRVSLKENKIGDLWE--TPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKL-PSRISRLVSLQHLDL 353 (577)
Q Consensus 277 ~~r~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~L 353 (577)
.++++.++++.+..++. ..++++|++|++++|.+..+++..|..+++|++|++++| .+..+ |..++++++|++|++
T Consensus 33 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 33 STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN-PIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCCCCTTSSTTCTTCCEEEC
T ss_pred CcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC-cccccChhhcCCcccCCEEEc
Confidence 38999999999888775 478999999999999988888777899999999999999 88887 778999999999999
Q ss_pred cCCCCCccc-ccccCCCcCcEeccccccccc--ccchHHhcCCCCCcEEEeeeecCccccc---------c-----cccC
Q 037229 354 SSSGILELP-KELGFLGNLACLNLENTSSHG--TITRQLRSNFSKPQVLRMFRFYGKAQYM---------K-----ADSL 416 (577)
Q Consensus 354 ~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~--~lp~~~i~~l~~L~~L~l~~~~~~~~~~---------~-----~~~~ 416 (577)
++|.+..+| ..++++++|++|++++| .+. .+|.. ++++++|++|++++|...+... + ..+.
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~ 189 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHN-FIHSCKLPAY-FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMS 189 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSS-CCCCCCCCGG-GGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECT
T ss_pred cCCccccccccccCCCCCCCEEeCCCC-cccceechHh-HhhcCCCCEEEccCCcceecChhhhhhhhccccccceeecc
Confidence 999998887 56999999999999999 565 46876 9999999999999987432210 0 1111
Q ss_pred CccCcccccccccCCccCceeEEEecCcc---------cccCC-------------------CccC--------cccee-
Q 037229 417 PFGGSEFLVEQLCCLKHLNVFSITLKSSY---------ALQKP-------------------NSEH--------TRSLE- 459 (577)
Q Consensus 417 ~~~~~~~~~~~l~~L~~L~~L~l~~~~~~---------~l~~l-------------------~~~~--------l~~L~- 459 (577)
+-. ....+.......+|+.|+++.+... .+..+ .... ++.+.
T Consensus 190 ~n~-l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l 268 (606)
T 3vq2_A 190 LNP-IDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL 268 (606)
T ss_dssp TCC-CCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEE
T ss_pred CCC-cceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheec
Confidence 100 1111222223337888888765431 00000 0000 00000
Q ss_pred ---------eecCCCCCCCcEEEecccC-----------CceEEecccCCCCCCCCCccCCCCCcceEeeccCCCcceec
Q 037229 460 ---------VLPLAEMRQLDKLHIAFCT-----------RLQEFEIECPGRNLMDLTWLIFAPNFRKIDINQSSHMEEII 519 (577)
Q Consensus 460 ---------~~~l~~l~~L~~L~l~~~~-----------~l~~l~l~~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~~~~ 519 (577)
...+..+++|+.|++.++. .++.+.+... .+..+|.+ .+++|+.|++++|.......
T Consensus 269 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n--~l~~lp~~-~l~~L~~L~l~~n~~~~~~~ 345 (606)
T 3vq2_A 269 TYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRC--QLKQFPTL-DLPFLKSLTLTMNKGSISFK 345 (606)
T ss_dssp CCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESC--CCSSCCCC-CCSSCCEEEEESCSSCEECC
T ss_pred cccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccc--cCcccccC-CCCccceeeccCCcCccchh
Confidence 0012334555555555432 2223333222 44555544 67777777777775554432
Q ss_pred CC--CcccEEecCCccccccc---ccCCCCCCCcceEeeecC
Q 037229 520 CI--DRLRKVSGGYKKILKRI---YPDVLPLKNLKGITVSSC 556 (577)
Q Consensus 520 ~~--~~L~~L~l~~~~~l~~l---~~~~~~~~~L~~L~i~~c 556 (577)
.. ++|+.|+++++. +..+ +.....+++|++|++++|
T Consensus 346 ~~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~L~~n 386 (606)
T 3vq2_A 346 KVALPSLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLDLSFN 386 (606)
T ss_dssp CCCCTTCCEEECCSSC-EEEEEECCHHHHCCSCCCEEECCSC
T ss_pred hccCCCCCEEECcCCc-cCCCcchhhhhccCCcccEeECCCC
Confidence 22 788888888754 4433 444556888888888765
No 29
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.80 E-value=1.1e-18 Score=188.02 Aligned_cols=122 Identities=16% Similarity=0.153 Sum_probs=80.9
Q ss_pred cCCccCceeEEEecCcccc-cCCCcc--Ccccee-------e-----ecCCCCCCCcEEEecccCCceEEecccCCCCCC
Q 037229 429 CCLKHLNVFSITLKSSYAL-QKPNSE--HTRSLE-------V-----LPLAEMRQLDKLHIAFCTRLQEFEIECPGRNLM 493 (577)
Q Consensus 429 ~~L~~L~~L~l~~~~~~~l-~~l~~~--~l~~L~-------~-----~~l~~l~~L~~L~l~~~~~l~~l~l~~~~~~l~ 493 (577)
+.+++|+.|+++.+..... +..... .++.|. . ..+..+++|+.|+++++ .+.
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N-------------~l~ 416 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLN-------------SLN 416 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTS-------------CCB
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCC-------------cCC
Confidence 6788999999987765431 110000 011111 0 01334455555555544 444
Q ss_pred C-CC--ccCCCCCcceEeeccCCCcceecCC--CcccEEecCCcccccccccCCCCCCCcceEeeecCCCCCcCCCC
Q 037229 494 D-LT--WLIFAPNFRKIDINQSSHMEEIICI--DRLRKVSGGYKKILKRIYPDVLPLKNLKGITVSSCPNLKRLPLN 565 (577)
Q Consensus 494 ~-l~--~l~~l~~L~~L~l~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~~L~~lp~~ 565 (577)
. +| .+..+++|+.|++++|.....++.. ++|+.|+++++ .++.+|.....+++|++|+++++ +++.+|..
T Consensus 417 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~ 491 (562)
T 3a79_B 417 SHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN-QLKSVPDG 491 (562)
T ss_dssp SCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS-CCCCCCTT
T ss_pred CccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCC-CCCCCCHH
Confidence 3 33 4667899999999998865555444 68999999987 58889888779999999999887 67788876
No 30
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.80 E-value=8.6e-19 Score=191.17 Aligned_cols=282 Identities=10% Similarity=0.080 Sum_probs=175.6
Q ss_pred CeeEEEEecCCCCC------------------CcCC-C--CCCCccEEeCccCCC-CCcchhhcCCCCcccEEEccCCCC
Q 037229 277 GTRRVSLKENKIGD------------------LWET-P--TSPQLLTLFLNINPL-SMIGGDLFQFKPCLKVLNLSNSPC 334 (577)
Q Consensus 277 ~~r~l~l~~~~~~~------------------l~~~-~--~~~~Lr~L~l~~~~~-~~~~~~~~~~l~~L~~L~L~~~~~ 334 (577)
.++.+.+.++.+.. +|.. . ++++|++|++.+|.+ ..+|.. +.++++|++|++++| .
T Consensus 207 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n-~ 284 (636)
T 4eco_A 207 KLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLINVACN-R 284 (636)
T ss_dssp TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT-TTTCSSCCEEECTTC-T
T ss_pred CCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHH-HhcCCCCCEEECcCC-C
Confidence 48899999988887 6765 4 688999999999884 455554 888999999999999 6
Q ss_pred -Cc--ccchhhhcC------cCCCEEeccCCCCCcccc--cccCCCcCcEeccccccccc-ccchHHhcCCCCCcEEEee
Q 037229 335 -LE--KLPSRISRL------VSLQHLDLSSSGILELPK--ELGFLGNLACLNLENTSSHG-TITRQLRSNFSKPQVLRMF 402 (577)
Q Consensus 335 -l~--~lp~~i~~l------~~L~~L~L~~~~i~~lp~--~i~~L~~L~~L~l~~~~~l~-~lp~~~i~~l~~L~~L~l~ 402 (577)
++ .+|..++.+ ++|++|++++|.+..+|. .++++++|++|++++| .+. .+| . ++++++|++|+++
T Consensus 285 ~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N-~l~g~ip-~-~~~l~~L~~L~L~ 361 (636)
T 4eco_A 285 GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN-QLEGKLP-A-FGSEIKLASLNLA 361 (636)
T ss_dssp TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSC-CCEEECC-C-CEEEEEESEEECC
T ss_pred CCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCC-cCccchh-h-hCCCCCCCEEECC
Confidence 77 478888877 889999999998888888 8888889999998888 565 788 4 7888888888888
Q ss_pred eecCcccc-----cccccCCccC----cccccccccCC--ccCceeEEEecCcccc--cCCC---cc--Cccceeeec--
Q 037229 403 RFYGKAQY-----MKADSLPFGG----SEFLVEQLCCL--KHLNVFSITLKSSYAL--QKPN---SE--HTRSLEVLP-- 462 (577)
Q Consensus 403 ~~~~~~~~-----~~~~~~~~~~----~~~~~~~l~~L--~~L~~L~l~~~~~~~l--~~l~---~~--~l~~L~~~~-- 462 (577)
+|....++ ++..+..+.. ....+..+..+ ++|+.|+++.+..... ..+. .. .+.+|+.+.
T Consensus 362 ~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls 441 (636)
T 4eco_A 362 YNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLS 441 (636)
T ss_dssp SSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECC
T ss_pred CCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECc
Confidence 77621110 0000000000 00112222222 1444444443332211 0000 00 011222111
Q ss_pred ------C-----CCCCCCcEEEecccC--------------------CceEEecccCCCCCCCCC-ccC--CCCCcceEe
Q 037229 463 ------L-----AEMRQLDKLHIAFCT--------------------RLQEFEIECPGRNLMDLT-WLI--FAPNFRKID 508 (577)
Q Consensus 463 ------l-----~~l~~L~~L~l~~~~--------------------~l~~l~l~~~~~~l~~l~-~l~--~l~~L~~L~ 508 (577)
+ ..+++|+.|+++++. .++.+.++.+ .+..+| .+. .+++|+.|+
T Consensus 442 ~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N--~l~~lp~~~~~~~l~~L~~L~ 519 (636)
T 4eco_A 442 NNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN--KLTKLSDDFRATTLPYLVGID 519 (636)
T ss_dssp SSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSS--CCCBCCGGGSTTTCTTCCEEE
T ss_pred CCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCC--cCCccChhhhhccCCCcCEEE
Confidence 1 124566666665532 3334444444 555555 444 788888888
Q ss_pred eccCCCcceecCC----CcccEEecCC------cccccccccCCCCCCCcceEeeecCCCCCcCCCCCC
Q 037229 509 INQSSHMEEIICI----DRLRKVSGGY------KKILKRIYPDVLPLKNLKGITVSSCPNLKRLPLNSN 567 (577)
Q Consensus 509 l~~~~~~~~~~~~----~~L~~L~l~~------~~~l~~l~~~~~~~~~L~~L~i~~c~~L~~lp~~~~ 567 (577)
|++|.... ++.. ++|+.|++++ +.-...+|.....+++|++|++++|. +..+|....
T Consensus 520 Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~~~ 586 (636)
T 4eco_A 520 LSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND-IRKVNEKIT 586 (636)
T ss_dssp CCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSCCC
T ss_pred CCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc-CCccCHhHh
Confidence 88877544 4332 8888888854 33355666666778888888888874 477776543
No 31
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.80 E-value=8.1e-19 Score=190.17 Aligned_cols=164 Identities=18% Similarity=0.247 Sum_probs=124.7
Q ss_pred CCCccccHHHHHHHHHHhhcC-CCceEEEEEeccc--------------------------h----------hHHH---H
Q 037229 31 SDLTVGLESTFDQVWSCLVEE-EQVGIIGLYGMEG--------------------------W----------IQEQ---I 70 (577)
Q Consensus 31 ~~~~vGr~~~~~~i~~~L~~~-~~~~vv~I~G~gG--------------------------w----------~~~~---i 70 (577)
...+|||+.++++|.++|... ++.++|+|+|||| | +... +
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~~l~~l 202 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKLQNL 202 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHHHHHHH
Confidence 367999999999999999864 6689999999999 2 1111 1
Q ss_pred HHHhCCCc--chhccCCHHHHHHHHHHhcc---ccEEEEEecCCChhhhcccCCCCCCCCCCcEEEEEeCchhhhhcCCC
Q 037229 71 RRKLGLVD--DLWARKGLEEKAMNIFGILS---KEFVLCWMMCGSELILTQMGVPVPNPKRMSKVLFTTRFVEVYGHKEA 145 (577)
Q Consensus 71 ~~~l~~~~--~~~~~~~~~~~~~~l~~~L~---kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIivTTR~~~v~~~~~~ 145 (577)
+..++... ......+.+.....++..+. +++||||||||+..+++.+ ..|++||||||+..++..+.
T Consensus 203 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~~~~- 274 (591)
T 1z6t_A 203 CTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTDSVM- 274 (591)
T ss_dssp HHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGTTCC-
T ss_pred HHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHHhcC-
Confidence 22332110 01134566777888888887 5899999999998877653 45899999999999987654
Q ss_pred CceEec---CCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCchHHHHHHHHHhcC
Q 037229 146 DEMFRM---ECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLPLVLVTTARAMAYK 206 (577)
Q Consensus 146 ~~~~~l---~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~~~ 206 (577)
...+++ ++|+.++|++||...++... ....+.+.+|+++|+|+|||++.+|+.++..
T Consensus 275 ~~~~~v~~l~~L~~~ea~~L~~~~~~~~~----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~ 334 (591)
T 1z6t_A 275 GPKYVVPVESSLGKEKGLEILSLFVNMKK----ADLPEQAHSIIKECKGSPLVVSLIGALLRDF 334 (591)
T ss_dssp SCEEEEECCSSCCHHHHHHHHHHHHTSCG----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred CCceEeecCCCCCHHHHHHHHHHHhCCCc----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcC
Confidence 344554 58999999999999987532 2234678999999999999999999999874
No 32
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.80 E-value=1.5e-18 Score=188.80 Aligned_cols=258 Identities=17% Similarity=0.142 Sum_probs=153.7
Q ss_pred eeEEEEecCCCCCCcC--CCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCccc-chhhhcCcCCCEEecc
Q 037229 278 TRRVSLKENKIGDLWE--TPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKL-PSRISRLVSLQHLDLS 354 (577)
Q Consensus 278 ~r~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~L~ 354 (577)
++++.++++.+..++. ...+++|++|++++|.+..+++..|..+++|++|++++| .+..+ |..++.+++|++|+++
T Consensus 35 l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 35 TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN-PLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp CCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCSEECTTTTSSCTTCCEEECT
T ss_pred CcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC-cccccChhhhcccccccEeecc
Confidence 7778888877776643 367788888888888777776666778888888888888 77665 5577788888888888
Q ss_pred CCCCCcc-cccccCCCcCcEeccccccccccc--chHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCC
Q 037229 355 SSGILEL-PKELGFLGNLACLNLENTSSHGTI--TRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCL 431 (577)
Q Consensus 355 ~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~l--p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 431 (577)
+|.+..+ |..++++++|++|++++| .+..+ |. +..+++|++|++.+|. .....+..++.+
T Consensus 114 ~n~i~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~--~~~l~~L~~L~L~~n~--------------l~~~~~~~~~~l 176 (606)
T 3t6q_A 114 QTGISSIDFIPLHNQKTLESLYLGSN-HISSIKLPK--GFPTEKLKVLDFQNNA--------------IHYLSKEDMSSL 176 (606)
T ss_dssp TSCCSCGGGSCCTTCTTCCEEECCSS-CCCCCCCCT--TCCCTTCCEEECCSSC--------------CCEECHHHHHTT
T ss_pred ccCcccCCcchhccCCcccEEECCCC-cccccCccc--ccCCcccCEEEcccCc--------------ccccChhhhhhh
Confidence 8887776 456778888888888887 56655 43 4558888888887776 222334455666
Q ss_pred ccCc--eeEEEecCcccccCCCccCccceeeecCCC---------------------------------------C--CC
Q 037229 432 KHLN--VFSITLKSSYALQKPNSEHTRSLEVLPLAE---------------------------------------M--RQ 468 (577)
Q Consensus 432 ~~L~--~L~l~~~~~~~l~~l~~~~l~~L~~~~l~~---------------------------------------l--~~ 468 (577)
++|+ .|+++.+.......-... ...|+.+.+.. + .+
T Consensus 177 ~~L~~l~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~ 255 (606)
T 3t6q_A 177 QQATNLSLNLNGNDIAGIEPGAFD-SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMS 255 (606)
T ss_dssp TTCCSEEEECTTCCCCEECTTTTT-TCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSE
T ss_pred cccceeEEecCCCccCccChhHhh-hccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCc
Confidence 6666 444443332221110000 00000000000 0 02
Q ss_pred CcEEEeccc-------------CCceEEecccCCCCCCCCC-ccCCCCCcceEeeccCCCcceecCC----CcccEEecC
Q 037229 469 LDKLHIAFC-------------TRLQEFEIECPGRNLMDLT-WLIFAPNFRKIDINQSSHMEEIICI----DRLRKVSGG 530 (577)
Q Consensus 469 L~~L~l~~~-------------~~l~~l~l~~~~~~l~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~----~~L~~L~l~ 530 (577)
|+.|+++++ ..++.+.+..+ .++.+| +++.+++|++|++++|......+.. ++|+.|+++
T Consensus 256 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTAT--HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333 (606)
T ss_dssp EEEEECTTCCCSSCCTTTTTTCTTCSEEECTTS--CCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred eeEEEeecCccCccCHHHhccccCCCEEeccCC--ccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence 233332221 12222222222 455554 5667777777777777644322211 777888887
Q ss_pred CcccccccccC-CCCCCCcceEeeecC
Q 037229 531 YKKILKRIYPD-VLPLKNLKGITVSSC 556 (577)
Q Consensus 531 ~~~~l~~l~~~-~~~~~~L~~L~i~~c 556 (577)
++.....++.. ...+++|++|++++|
T Consensus 334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n 360 (606)
T 3t6q_A 334 GNTKRLELGTGCLENLENLRELDLSHD 360 (606)
T ss_dssp SCSSCCBCCSSTTTTCTTCCEEECCSS
T ss_pred CCCcccccchhhhhccCcCCEEECCCC
Confidence 76644455443 456778888877765
No 33
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.80 E-value=4.1e-18 Score=181.76 Aligned_cols=121 Identities=19% Similarity=0.124 Sum_probs=79.0
Q ss_pred eEEEEecCCCCCCcCCCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCccc-chhhhcCcCCCEEeccCCC
Q 037229 279 RRVSLKENKIGDLWETPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKL-PSRISRLVSLQHLDLSSSG 357 (577)
Q Consensus 279 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~L~~~~ 357 (577)
+.+.++++.+..+|.... ++|++|++++|.+..+++..|..+++|++|++++| .++.+ |..++.+++|++|+|++|.
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCCc
Confidence 455666666666665433 66777777777766666555666777777777777 66655 5566677777777777777
Q ss_pred CCcccccccCCCcCcEecccccccccc--cchHHhcCCCCCcEEEeeeec
Q 037229 358 ILELPKELGFLGNLACLNLENTSSHGT--ITRQLRSNFSKPQVLRMFRFY 405 (577)
Q Consensus 358 i~~lp~~i~~L~~L~~L~l~~~~~l~~--lp~~~i~~l~~L~~L~l~~~~ 405 (577)
++.+|.. .+++|++|++++| .+.. +|.. ++++++|++|++++|.
T Consensus 81 l~~lp~~--~l~~L~~L~L~~N-~l~~~~~p~~-~~~l~~L~~L~L~~n~ 126 (520)
T 2z7x_B 81 LVKISCH--PTVNLKHLDLSFN-AFDALPICKE-FGNMSQLKFLGLSTTH 126 (520)
T ss_dssp CCEEECC--CCCCCSEEECCSS-CCSSCCCCGG-GGGCTTCCEEEEEESS
T ss_pred eeecCcc--ccCCccEEeccCC-ccccccchhh-hccCCcceEEEecCcc
Confidence 7766665 6677777777776 4443 3444 6677777777776665
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.80 E-value=2e-18 Score=180.40 Aligned_cols=117 Identities=18% Similarity=0.116 Sum_probs=103.0
Q ss_pred CeeEEEEecCCCCCCcCCCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchhhhcCcCCCEEeccCC
Q 037229 277 GTRRVSLKENKIGDLWETPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSSS 356 (577)
Q Consensus 277 ~~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~ 356 (577)
.++++.+.++.+..++ ...+++|++|++++|.+..++ +..+++|++|++++| .++.+| ++.+++|++|++++|
T Consensus 65 ~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~~N-~l~~l~--~~~l~~L~~L~l~~N 137 (457)
T 3bz5_A 65 GLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTN-KLTKLD--VSQNPLLTYLNCARN 137 (457)
T ss_dssp TCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECCSS-CCSCCC--CTTCTTCCEEECTTS
T ss_pred CCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee---cCCCCcCCEEECCCC-cCCeec--CCCCCcCCEEECCCC
Confidence 3899999999998886 788999999999999988874 788999999999999 999886 889999999999999
Q ss_pred CCCcccccccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeec
Q 037229 357 GILELPKELGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFY 405 (577)
Q Consensus 357 ~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 405 (577)
.++.+| ++++++|++|++++|..+..++ ++.+++|++|++++|.
T Consensus 138 ~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~ 181 (457)
T 3bz5_A 138 TLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNK 181 (457)
T ss_dssp CCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSC
T ss_pred ccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCc
Confidence 999885 8889999999999997666663 7789999999998887
No 35
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.79 E-value=3.6e-18 Score=192.60 Aligned_cols=128 Identities=23% Similarity=0.223 Sum_probs=93.2
Q ss_pred cCeeEEEEecCCCCCCcC--CCCCCCccEEeCccCC-CCCcchhhcCCCCcccEEEccCCCCCccc-chhhhcCcCCCEE
Q 037229 276 EGTRRVSLKENKIGDLWE--TPTSPQLLTLFLNINP-LSMIGGDLFQFKPCLKVLNLSNSPCLEKL-PSRISRLVSLQHL 351 (577)
Q Consensus 276 ~~~r~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~-~~~~~~~~~~~l~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L 351 (577)
..++++.++++.+..+.. ...+++|++|++++|. ...+++..|.++++|++|+|++| .+..+ |..++++++|++|
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS-KIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC-CCCEECTTSSCSCSSCCCE
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC-cCcccCHhHccCCcccCEe
Confidence 347788888887776543 3777888888888874 55565555788888888888888 77766 6678888888888
Q ss_pred eccCCCCCc-cccc--ccCCCcCcEecccccccccccc-hHHhcCCCCCcEEEeeeec
Q 037229 352 DLSSSGILE-LPKE--LGFLGNLACLNLENTSSHGTIT-RQLRSNFSKPQVLRMFRFY 405 (577)
Q Consensus 352 ~L~~~~i~~-lp~~--i~~L~~L~~L~l~~~~~l~~lp-~~~i~~l~~L~~L~l~~~~ 405 (577)
+|++|.+.. +|.. ++++++|++|++++| .+..++ ...++++++|++|++++|.
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCCc
Confidence 888887764 4544 778888888888888 555542 2237788888888888776
No 36
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.79 E-value=1.2e-18 Score=176.38 Aligned_cols=227 Identities=19% Similarity=0.184 Sum_probs=167.2
Q ss_pred CCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccch-hhhcCcCCCEEeccCCCCCccc-ccccCCCcCc
Q 037229 295 PTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPS-RISRLVSLQHLDLSSSGILELP-KELGFLGNLA 372 (577)
Q Consensus 295 ~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~ 372 (577)
..|+.....+.+++.+..+|..++ ++|++|+++++ .++.+|. .++++++|++|++++|.+..++ ..++++++|+
T Consensus 28 ~~C~~~~~c~~~~~~l~~iP~~~~---~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (353)
T 2z80_A 28 LSCDRNGICKGSSGSLNSIPSGLT---EAVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103 (353)
T ss_dssp CEECTTSEEECCSTTCSSCCTTCC---TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCCCeEeeCCCCCccccccccc---ccCcEEECCCC-cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCC
Confidence 456666678888998999998743 58999999999 9999876 7999999999999999999875 4599999999
Q ss_pred EecccccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCccccc--ccccCCccCceeEEEecC-cccccC
Q 037229 373 CLNLENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLV--EQLCCLKHLNVFSITLKS-SYALQK 449 (577)
Q Consensus 373 ~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~L~~L~~L~l~~~~-~~~l~~ 449 (577)
+|++++| .+..+|...++++++|++|++++|. .. ..+ ..+..+++|+.|+++.+. ...+..
T Consensus 104 ~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~--------------l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 167 (353)
T 2z80_A 104 HLDLSYN-YLSNLSSSWFKPLSSLTFLNLLGNP--------------YK-TLGETSLFSHLTKLQILRVGNMDTFTKIQR 167 (353)
T ss_dssp EEECCSS-CCSSCCHHHHTTCTTCSEEECTTCC--------------CS-SSCSSCSCTTCTTCCEEEEEESSSCCEECT
T ss_pred EEECCCC-cCCcCCHhHhCCCccCCEEECCCCC--------------Cc-ccCchhhhccCCCCcEEECCCCccccccCH
Confidence 9999999 8889998768999999999999987 12 222 367889999999999763 222211
Q ss_pred CCccCccceeeecCCCCCCCcEEEecccCCceEEecccCCCCCCCCCccCCCCCcceEeeccCCCcceecCC-----Ccc
Q 037229 450 PNSEHTRSLEVLPLAEMRQLDKLHIAFCTRLQEFEIECPGRNLMDLTWLIFAPNFRKIDINQSSHMEEIICI-----DRL 524 (577)
Q Consensus 450 l~~~~l~~L~~~~l~~l~~L~~L~l~~~~~l~~l~l~~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~~~~~~-----~~L 524 (577)
..+..+++|++|+++++.-.. + .+..++.+++|++|++++|.. ..++.. ++|
T Consensus 168 -----------~~~~~l~~L~~L~l~~n~l~~-~----------~~~~l~~l~~L~~L~l~~n~l-~~~~~~~~~~~~~L 224 (353)
T 2z80_A 168 -----------KDFAGLTFLEELEIDASDLQS-Y----------EPKSLKSIQNVSHLILHMKQH-ILLLEIFVDVTSSV 224 (353)
T ss_dssp -----------TTTTTCCEEEEEEEEETTCCE-E----------CTTTTTTCSEEEEEEEECSCS-TTHHHHHHHHTTTE
T ss_pred -----------HHccCCCCCCEEECCCCCcCc-c----------CHHHHhccccCCeecCCCCcc-ccchhhhhhhcccc
Confidence 135678899999998873211 1 112455667777777776653 222211 667
Q ss_pred cEEecCCcccccc--------------------------------cccCCCCCCCcceEeeecCCCCCcCCCCC
Q 037229 525 RKVSGGYKKILKR--------------------------------IYPDVLPLKNLKGITVSSCPNLKRLPLNS 566 (577)
Q Consensus 525 ~~L~l~~~~~l~~--------------------------------l~~~~~~~~~L~~L~i~~c~~L~~lp~~~ 566 (577)
+.|+++++. +.. ++.....+++|++|++++| +++.+|...
T Consensus 225 ~~L~L~~n~-l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~ 296 (353)
T 2z80_A 225 ECLELRDTD-LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGI 296 (353)
T ss_dssp EEEEEESCB-CTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTT
T ss_pred cEEECCCCc-cccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHH
Confidence 777766643 222 2222346889999999987 777888653
No 37
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.78 E-value=4.5e-18 Score=181.47 Aligned_cols=124 Identities=24% Similarity=0.330 Sum_probs=109.3
Q ss_pred cCeeEEEEecCCCCCCcC--CCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchhhhcCcCCCEEec
Q 037229 276 EGTRRVSLKENKIGDLWE--TPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDL 353 (577)
Q Consensus 276 ~~~r~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L 353 (577)
..++++.++++.+..++. ...+++|++|++++|.+..+++..|..+++|++|++++| .++.+|.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLVKISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CCCEEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC-ceeecCcc--ccCCccEEec
Confidence 458999999999988764 488999999999999999887777999999999999999 99999977 8999999999
Q ss_pred cCCCCCc--ccccccCCCcCcEecccccccccccchHHhcCCCCC--cEEEeeeecC
Q 037229 354 SSSGILE--LPKELGFLGNLACLNLENTSSHGTITRQLRSNFSKP--QVLRMFRFYG 406 (577)
Q Consensus 354 ~~~~i~~--lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L--~~L~l~~~~~ 406 (577)
++|.+.. +|..++++++|++|++++| .+.. .. +..+++| ++|++.+|..
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n-~l~~--~~-~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTT-HLEK--SS-VLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEES-SCCG--GG-GGGGTTSCEEEEEEEECTT
T ss_pred cCCccccccchhhhccCCcceEEEecCc-ccch--hh-ccccccceeeEEEeecccc
Confidence 9999986 5789999999999999999 5554 22 7788888 9999999863
No 38
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.78 E-value=5.8e-19 Score=175.28 Aligned_cols=227 Identities=15% Similarity=0.129 Sum_probs=178.7
Q ss_pred CCccEEeCccCCCCC---cchhhcCCCCcccEEEccC-CCCCc-ccchhhhcCcCCCEEeccCCCCC-cccccccCCCcC
Q 037229 298 PQLLTLFLNINPLSM---IGGDLFQFKPCLKVLNLSN-SPCLE-KLPSRISRLVSLQHLDLSSSGIL-ELPKELGFLGNL 371 (577)
Q Consensus 298 ~~Lr~L~l~~~~~~~---~~~~~~~~l~~L~~L~L~~-~~~l~-~lp~~i~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L 371 (577)
.+++.|++.++.+.. +|.. +..+++|++|++++ + .+. .+|..++++++|++|++++|.+. .+|..++++++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~-l~~l~~L~~L~L~~~n-~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSS-LANLPYLNFLYIGGIN-NLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGG-GGGCTTCSEEEEEEET-TEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred ceEEEEECCCCCccCCcccChh-HhCCCCCCeeeCCCCC-cccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence 679999999999774 6665 89999999999995 7 666 77999999999999999999998 889999999999
Q ss_pred cEeccccccccc-ccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCc-cCceeEEEecCcccccC
Q 037229 372 ACLNLENTSSHG-TITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLK-HLNVFSITLKSSYALQK 449 (577)
Q Consensus 372 ~~L~l~~~~~l~-~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~L~~L~l~~~~~~~l~~ 449 (577)
++|++++| .+. .+|.. ++++++|++|++.+|. .....+..+..++ +|+.|+++.+......
T Consensus 128 ~~L~Ls~N-~l~~~~p~~-~~~l~~L~~L~L~~N~--------------l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~- 190 (313)
T 1ogq_A 128 VTLDFSYN-ALSGTLPPS-ISSLPNLVGITFDGNR--------------ISGAIPDSYGSFSKLFTSMTISRNRLTGKI- 190 (313)
T ss_dssp CEEECCSS-EEESCCCGG-GGGCTTCCEEECCSSC--------------CEEECCGGGGCCCTTCCEEECCSSEEEEEC-
T ss_pred CEEeCCCC-ccCCcCChH-HhcCCCCCeEECcCCc--------------ccCcCCHHHhhhhhcCcEEECcCCeeeccC-
Confidence 99999999 555 67876 9999999999999997 3446677888888 9999999876543111
Q ss_pred CCccCccceeeecCCCCCCCcEEEecccCCceEEecccCCCCCCCCCccCCCCCcceEeeccCCCcceecCC---CcccE
Q 037229 450 PNSEHTRSLEVLPLAEMRQLDKLHIAFCTRLQEFEIECPGRNLMDLTWLIFAPNFRKIDINQSSHMEEIICI---DRLRK 526 (577)
Q Consensus 450 l~~~~l~~L~~~~l~~l~~L~~L~l~~~~~l~~l~l~~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~~~~~~---~~L~~ 526 (577)
+ ..+..++ |+.|+++++.... .....++.+++|+.|++++|.....++.. ++|++
T Consensus 191 -~---------~~~~~l~-L~~L~Ls~N~l~~-----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~ 248 (313)
T 1ogq_A 191 -P---------PTFANLN-LAFVDLSRNMLEG-----------DASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNG 248 (313)
T ss_dssp -C---------GGGGGCC-CSEEECCSSEEEE-----------CCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCE
T ss_pred -C---------hHHhCCc-ccEEECcCCcccC-----------cCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCE
Confidence 1 1234455 9999998863211 01126778999999999999765444333 99999
Q ss_pred EecCCcccccccccCCCCCCCcceEeeecCCCCCcCCCC
Q 037229 527 VSGGYKKILKRIYPDVLPLKNLKGITVSSCPNLKRLPLN 565 (577)
Q Consensus 527 L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~~L~~lp~~ 565 (577)
|+++++.--..+|.....+++|++|++++++--..+|..
T Consensus 249 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred EECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 999997754477777788999999999987433355544
No 39
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.78 E-value=2.2e-18 Score=190.12 Aligned_cols=261 Identities=17% Similarity=0.138 Sum_probs=151.7
Q ss_pred eeEEEEecCCCCCCcC--CCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccch-hhhcCcCCCEEecc
Q 037229 278 TRRVSLKENKIGDLWE--TPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPS-RISRLVSLQHLDLS 354 (577)
Q Consensus 278 ~r~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~L~ 354 (577)
++++.++++.+..++. ...+++|++|++++|.+..+++..|..+++|++|++++| .+..+|. .++.+++|++|+++
T Consensus 27 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~ 105 (680)
T 1ziw_A 27 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLM 105 (680)
T ss_dssp CSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECC
T ss_pred CcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChhhhccCCCCCEEECC
Confidence 6777777777666654 366677777777777766666666677777777777777 7777765 46777777777777
Q ss_pred CCCCCccc-ccccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccc--cCC
Q 037229 355 SSGILELP-KELGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQL--CCL 431 (577)
Q Consensus 355 ~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~L 431 (577)
+|.+..+| ..++++++|++|++++| .+...+.+.++++++|++|++.+|.. .......+ ..+
T Consensus 106 ~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l--------------~~~~~~~~~~~~~ 170 (680)
T 1ziw_A 106 SNSIQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLSNNKI--------------QALKSEELDIFAN 170 (680)
T ss_dssp SSCCCCCCSCTTTTCTTCCEEECCSS-CCSCCCCCSSSCCTTCCEEECCSSCC--------------CCBCHHHHGGGTT
T ss_pred CCccCccChhHccccCCCCEEECCCC-cccccCchhhcccccCCEEEccCCcc--------------cccCHHHhhcccc
Confidence 77776665 34677777777777777 44444433366777777777776651 11112222 234
Q ss_pred ccCceeEEEecCcccccCCCccCccceeeecCC----------------CCCCCcEEEecccC---------------Cc
Q 037229 432 KHLNVFSITLKSSYALQKPNSEHTRSLEVLPLA----------------EMRQLDKLHIAFCT---------------RL 480 (577)
Q Consensus 432 ~~L~~L~l~~~~~~~l~~l~~~~l~~L~~~~l~----------------~l~~L~~L~l~~~~---------------~l 480 (577)
++|+.|+++.+.......-....+.+|..+.+. ..++|+.|+++++. .+
T Consensus 171 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L 250 (680)
T 1ziw_A 171 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNL 250 (680)
T ss_dssp CEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCC
T ss_pred ccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCC
Confidence 566666666544332211100111222111111 12456666665542 13
Q ss_pred eEEecccCCCCCCCC--CccCCCCCcceEeeccCCCcceecCC----CcccEEecCCccccc-----cccc----CCCCC
Q 037229 481 QEFEIECPGRNLMDL--TWLIFAPNFRKIDINQSSHMEEIICI----DRLRKVSGGYKKILK-----RIYP----DVLPL 545 (577)
Q Consensus 481 ~~l~l~~~~~~l~~l--~~l~~l~~L~~L~l~~~~~~~~~~~~----~~L~~L~l~~~~~l~-----~l~~----~~~~~ 545 (577)
+.+.++.+ .+..+ .+++.+++|++|++++|......+.. ++|+.|++.++..-. .++. ....+
T Consensus 251 ~~L~Ls~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l 328 (680)
T 1ziw_A 251 TMLDLSYN--NLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL 328 (680)
T ss_dssp CEEECTTS--CCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTC
T ss_pred CEEECCCC--CcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccC
Confidence 44444333 44433 25677888888888888654433322 888888887643211 2221 34468
Q ss_pred CCcceEeeecC
Q 037229 546 KNLKGITVSSC 556 (577)
Q Consensus 546 ~~L~~L~i~~c 556 (577)
++|++|++++|
T Consensus 329 ~~L~~L~l~~n 339 (680)
T 1ziw_A 329 KCLEHLNMEDN 339 (680)
T ss_dssp TTCCEEECCSC
T ss_pred CCCCEEECCCC
Confidence 88999998875
No 40
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.77 E-value=5.1e-18 Score=188.80 Aligned_cols=244 Identities=9% Similarity=0.106 Sum_probs=145.9
Q ss_pred eeEEEEecCCCCCCcC---CCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchhhhcCcC-CCEEec
Q 037229 278 TRRVSLKENKIGDLWE---TPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVS-LQHLDL 353 (577)
Q Consensus 278 ~r~l~l~~~~~~~l~~---~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~-L~~L~L 353 (577)
++.+.+.++.+..+|. ...+++|+.|++++|.+..+| .+..+++|++|++++| .+..+|..++.+++ |++|+|
T Consensus 550 L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp--~~~~L~~L~~L~Ls~N-~l~~lp~~l~~l~~~L~~L~L 626 (876)
T 4ecn_A 550 IQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE--AFGTNVKLTDLKLDYN-QIEEIPEDFCAFTDQVEGLGF 626 (876)
T ss_dssp CCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC--CCCTTSEESEEECCSS-CCSCCCTTSCEECTTCCEEEC
T ss_pred ccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch--hhcCCCcceEEECcCC-ccccchHHHhhccccCCEEEC
Confidence 6777777777776666 466777777777777766666 2677777777777777 67777777777777 777777
Q ss_pred cCCCCCcccccccCCCc--CcEeccccccccccc-ch---HHhc--CCCCCcEEEeeeecCcccccccccCCccCccccc
Q 037229 354 SSSGILELPKELGFLGN--LACLNLENTSSHGTI-TR---QLRS--NFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLV 425 (577)
Q Consensus 354 ~~~~i~~lp~~i~~L~~--L~~L~l~~~~~l~~l-p~---~~i~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 425 (577)
++|.+..+|..++.+.. |+.|++++| .+... |. . ++ .+++|++|++++|.. . ..+
T Consensus 627 s~N~L~~lp~~~~~~~~~~L~~L~Ls~N-~l~g~ip~l~~~-l~~~~~~~L~~L~Ls~N~L--------------~-~lp 689 (876)
T 4ecn_A 627 SHNKLKYIPNIFNAKSVYVMGSVDFSYN-KIGSEGRNISCS-MDDYKGINASTVTLSYNEI--------------Q-KFP 689 (876)
T ss_dssp CSSCCCSCCSCCCTTCSSCEEEEECCSS-CTTTTSSSCSSC-TTTCCCCCEEEEECCSSCC--------------C-SCC
T ss_pred cCCCCCcCchhhhccccCCCCEEECcCC-cCCCccccchhh-hccccCCCcCEEEccCCcC--------------C-ccC
Confidence 77777777766555433 566666555 23221 11 1 11 233555555555541 1 222
Q ss_pred ccc-cCCccCceeEEEecCcccccCCCcc----------Ccccee---------eecCC--CCCCCcEEEecccCCceEE
Q 037229 426 EQL-CCLKHLNVFSITLKSSYALQKPNSE----------HTRSLE---------VLPLA--EMRQLDKLHIAFCTRLQEF 483 (577)
Q Consensus 426 ~~l-~~L~~L~~L~l~~~~~~~l~~l~~~----------~l~~L~---------~~~l~--~l~~L~~L~l~~~~~l~~l 483 (577)
..+ ..+++|+.|+++.+....++..... .++.|. ...+. .+++|+.|+++++
T Consensus 690 ~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N------ 763 (876)
T 4ecn_A 690 TELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYN------ 763 (876)
T ss_dssp HHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSS------
T ss_pred HHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCC------
Confidence 222 2455556666555443332221111 011111 00122 4566666666654
Q ss_pred ecccCCCCCCCCC-ccCCCCCcceEeeccC------CCcceecCC----CcccEEecCCcccccccccCCCCCCCcceEe
Q 037229 484 EIECPGRNLMDLT-WLIFAPNFRKIDINQS------SHMEEIICI----DRLRKVSGGYKKILKRIYPDVLPLKNLKGIT 552 (577)
Q Consensus 484 ~l~~~~~~l~~l~-~l~~l~~L~~L~l~~~------~~~~~~~~~----~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~ 552 (577)
.+..+| .++.+++|+.|+|++| .....++.. ++|+.|+|++|. +..+|... +++|+.|+
T Consensus 764 -------~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~-L~~Ip~~l--~~~L~~Ld 833 (876)
T 4ecn_A 764 -------CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND-IRKVDEKL--TPQLYILD 833 (876)
T ss_dssp -------CCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSCC--CSSSCEEE
T ss_pred -------CCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC-CCccCHhh--cCCCCEEE
Confidence 555555 6778999999999773 333333332 899999999976 48887653 47999999
Q ss_pred eecCC
Q 037229 553 VSSCP 557 (577)
Q Consensus 553 i~~c~ 557 (577)
+++|+
T Consensus 834 Ls~N~ 838 (876)
T 4ecn_A 834 IADNP 838 (876)
T ss_dssp CCSCT
T ss_pred CCCCC
Confidence 99886
No 41
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.77 E-value=1.3e-17 Score=179.53 Aligned_cols=122 Identities=19% Similarity=0.186 Sum_probs=107.2
Q ss_pred eeEEEEecCCCCCCcCCCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCccc-chhhhcCcCCCEEeccCC
Q 037229 278 TRRVSLKENKIGDLWETPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKL-PSRISRLVSLQHLDLSSS 356 (577)
Q Consensus 278 ~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~L~~~ 356 (577)
.+++.+.++.+..+|... .++|++|++++|.+..+++..|..+++|++|++++| .++.+ |..++.+++|++|++++|
T Consensus 33 ~~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CCEEECTTSCCCSCCTTS-CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTTS
T ss_pred CcEEEcCCCCCccCCCCC-CCCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCCC
Confidence 478889999998888653 389999999999999988777999999999999999 99888 667999999999999999
Q ss_pred CCCcccccccCCCcCcEecccccccccccc--hHHhcCCCCCcEEEeeeec
Q 037229 357 GILELPKELGFLGNLACLNLENTSSHGTIT--RQLRSNFSKPQVLRMFRFY 405 (577)
Q Consensus 357 ~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp--~~~i~~l~~L~~L~l~~~~ 405 (577)
.++.+|.. .+++|++|++++| .+..+| .. ++++++|++|+++++.
T Consensus 111 ~l~~lp~~--~l~~L~~L~Ls~N-~l~~l~~p~~-~~~l~~L~~L~L~~n~ 157 (562)
T 3a79_B 111 RLQNISCC--PMASLRHLDLSFN-DFDVLPVCKE-FGNLTKLTFLGLSAAK 157 (562)
T ss_dssp CCCEECSC--CCTTCSEEECCSS-CCSBCCCCGG-GGGCTTCCEEEEECSB
T ss_pred cCCccCcc--ccccCCEEECCCC-CccccCchHh-hcccCcccEEecCCCc
Confidence 99999987 8999999999999 677765 45 8999999999999986
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.77 E-value=3.4e-18 Score=171.34 Aligned_cols=252 Identities=16% Similarity=0.122 Sum_probs=178.0
Q ss_pred CeeEEEEecCCCCCCcC--CCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchhhhcCcCCCEEecc
Q 037229 277 GTRRVSLKENKIGDLWE--TPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLS 354 (577)
Q Consensus 277 ~~r~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~ 354 (577)
.++.+.+.++.+..++. ...+++|++|++.+|.+..+++..|..+++|++|++++| .+..+|..+. ++|++|+++
T Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~--~~L~~L~l~ 131 (332)
T 2ft3_A 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN-HLVEIPPNLP--SSLVELRIH 131 (332)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS-CCCSCCSSCC--TTCCEEECC
T ss_pred CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC-cCCccCcccc--ccCCEEECC
Confidence 48999999999887754 588999999999999988887777999999999999999 9999988765 899999999
Q ss_pred CCCCCccccc-ccCCCcCcEecccccccccc--cchHHhcCCCCCcEEEeeeecCccccc--ccccCCcc-----Ccccc
Q 037229 355 SSGILELPKE-LGFLGNLACLNLENTSSHGT--ITRQLRSNFSKPQVLRMFRFYGKAQYM--KADSLPFG-----GSEFL 424 (577)
Q Consensus 355 ~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~--lp~~~i~~l~~L~~L~l~~~~~~~~~~--~~~~~~~~-----~~~~~ 424 (577)
+|.+..+|.. +.++++|++|++++| .+.. ++...+..+ +|++|++.+|....++. ...+..+. .....
T Consensus 132 ~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~ 209 (332)
T 2ft3_A 132 DNRIRKVPKGVFSGLRNMNCIEMGGN-PLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIE 209 (332)
T ss_dssp SSCCCCCCSGGGSSCSSCCEEECCSC-CCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCC
T ss_pred CCccCccCHhHhCCCccCCEEECCCC-ccccCCCCcccccCC-ccCEEECcCCCCCccCccccCCCCEEECCCCcCCccC
Confidence 9999998875 889999999999999 5542 322226677 89999998887333211 01111111 11222
Q ss_pred cccccCCccCceeEEEecCcccccCCCccCccceeeecCCCCCCCcEEEecccCCceEEecccCCCCCCCCC-ccCCCCC
Q 037229 425 VEQLCCLKHLNVFSITLKSSYALQKPNSEHTRSLEVLPLAEMRQLDKLHIAFCTRLQEFEIECPGRNLMDLT-WLIFAPN 503 (577)
Q Consensus 425 ~~~l~~L~~L~~L~l~~~~~~~l~~l~~~~l~~L~~~~l~~l~~L~~L~l~~~~~l~~l~l~~~~~~l~~l~-~l~~l~~ 503 (577)
+..+..+++|+.|+++.+....+.. ..+..+++|+.|+++++ .+..+| +++.+++
T Consensus 210 ~~~l~~l~~L~~L~L~~N~l~~~~~-----------~~~~~l~~L~~L~L~~N-------------~l~~lp~~l~~l~~ 265 (332)
T 2ft3_A 210 LEDLLRYSKLYRLGLGHNQIRMIEN-----------GSLSFLPTLRELHLDNN-------------KLSRVPAGLPDLKL 265 (332)
T ss_dssp TTSSTTCTTCSCCBCCSSCCCCCCT-----------TGGGGCTTCCEEECCSS-------------CCCBCCTTGGGCTT
T ss_pred HHHhcCCCCCCEEECCCCcCCcCCh-----------hHhhCCCCCCEEECCCC-------------cCeecChhhhcCcc
Confidence 3445666677777776554332211 12456788999999876 555555 6889999
Q ss_pred cceEeeccCCCcceecCC----------CcccEEecCCcccc--cccccCCCCCCCcceEeeecCC
Q 037229 504 FRKIDINQSSHMEEIICI----------DRLRKVSGGYKKIL--KRIYPDVLPLKNLKGITVSSCP 557 (577)
Q Consensus 504 L~~L~l~~~~~~~~~~~~----------~~L~~L~l~~~~~l--~~l~~~~~~~~~L~~L~i~~c~ 557 (577)
|+.|++++|......... ++|+.|++.+++-. ...+.....+++|+.++++++.
T Consensus 266 L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 266 LQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 999999998744322111 67899999997732 1222334467888888888764
No 43
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.77 E-value=1e-17 Score=182.25 Aligned_cols=148 Identities=23% Similarity=0.175 Sum_probs=103.9
Q ss_pred eeEEEEecCCCCCCcC--CCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCccc-chhhhcCcCCCEEecc
Q 037229 278 TRRVSLKENKIGDLWE--TPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKL-PSRISRLVSLQHLDLS 354 (577)
Q Consensus 278 ~r~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~L~ 354 (577)
++.+.+.++.+..++. ...+++|++|++.+|.+..+|.. +..+++|++|++++| .+..+ |..++.+++|++|+++
T Consensus 256 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~-l~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSG-LVGLSTLKKLVLSAN-KFENLCQISASNFPSLTHLSIK 333 (606)
T ss_dssp EEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSS-CCSCTTCCEEECTTC-CCSBGGGGCGGGCTTCSEEECC
T ss_pred eeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChh-hcccccCCEEECccC-CcCcCchhhhhccCcCCEEECC
Confidence 6777777777776665 36677888888888877777776 677788888888888 77766 4567778888888888
Q ss_pred CCCCC-ccccc-ccCCCcCcEeccccccccccc---chHHhcCCCCCcEEEeeeecCcccccccccCCccCccccccccc
Q 037229 355 SSGIL-ELPKE-LGFLGNLACLNLENTSSHGTI---TRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLC 429 (577)
Q Consensus 355 ~~~i~-~lp~~-i~~L~~L~~L~l~~~~~l~~l---p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 429 (577)
+|.+. .+|.. ++.+++|++|++++| .+..+ |.. ++++++|++|++.+|. .....+..+.
T Consensus 334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~-~~~l~~L~~L~l~~n~--------------l~~~~~~~~~ 397 (606)
T 3t6q_A 334 GNTKRLELGTGCLENLENLRELDLSHD-DIETSDCCNLQ-LRNLSHLQSLNLSYNE--------------PLSLKTEAFK 397 (606)
T ss_dssp SCSSCCBCCSSTTTTCTTCCEEECCSS-CCCEEEESTTT-TTTCTTCCEEECCSCS--------------CEEECTTTTT
T ss_pred CCCcccccchhhhhccCcCCEEECCCC-ccccccCcchh-cccCCCCCEEECCCCc--------------CCcCCHHHhc
Confidence 87665 55554 777788888888877 55555 333 7778888888887775 2233345566
Q ss_pred CCccCceeEEEecC
Q 037229 430 CLKHLNVFSITLKS 443 (577)
Q Consensus 430 ~L~~L~~L~l~~~~ 443 (577)
.+++|+.|+++.+.
T Consensus 398 ~l~~L~~L~l~~n~ 411 (606)
T 3t6q_A 398 ECPQLELLDLAFTR 411 (606)
T ss_dssp TCTTCSEEECTTCC
T ss_pred CCccCCeEECCCCc
Confidence 66677777766544
No 44
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.77 E-value=5.1e-18 Score=183.16 Aligned_cols=127 Identities=23% Similarity=0.223 Sum_probs=112.9
Q ss_pred CeeEEEEecCCCCCCcC--CCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccc-hhhhcCcCCCEEec
Q 037229 277 GTRRVSLKENKIGDLWE--TPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLP-SRISRLVSLQHLDL 353 (577)
Q Consensus 277 ~~r~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~L 353 (577)
.++++.++++.+..++. ...+++|++|++++|.+..+++..|..+++|++|++++| .++.+| ..++.+++|++|++
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEEC
T ss_pred cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC-cCCccCHhhhcCccccccccc
Confidence 38999999999887764 488999999999999998888888999999999999999 898885 67999999999999
Q ss_pred cCCCCCcccc-cccCCCcCcEecccccccccc--cchHHhcCCCCCcEEEeeeecC
Q 037229 354 SSSGILELPK-ELGFLGNLACLNLENTSSHGT--ITRQLRSNFSKPQVLRMFRFYG 406 (577)
Q Consensus 354 ~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~--lp~~~i~~l~~L~~L~l~~~~~ 406 (577)
++|.+..+|. .++++++|++|++++| .+.. +|.. ++++++|++|++.+|..
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~-~~~l~~L~~L~l~~n~l 161 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY-FSNLTNLEHLDLSSNKI 161 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSS-CCCCCCCCGG-GGGCTTCCEEECTTSCC
T ss_pred cccccccCCCccccccccccEEecCCC-ccceecChhh-hcccCCCCEEeCcCCcc
Confidence 9999999887 5999999999999999 5664 6777 99999999999998863
No 45
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.77 E-value=1.8e-17 Score=186.86 Aligned_cols=150 Identities=19% Similarity=0.162 Sum_probs=118.1
Q ss_pred eEEEEecCCCCCCcCCCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCccc-chhhhcCcCCCEEeccCCC
Q 037229 279 RRVSLKENKIGDLWETPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKL-PSRISRLVSLQHLDLSSSG 357 (577)
Q Consensus 279 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~L~~~~ 357 (577)
+.+..+++.+..+|. -.++|++|++++|.+..+++..|..+++|++|+|++|..+..+ |..++++++|++|+|++|.
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~ 84 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc
Confidence 345666778888887 6689999999999988887767999999999999999445566 7789999999999999999
Q ss_pred CCcc-cccccCCCcCcEecccccccccc-cch-HHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCccC
Q 037229 358 ILEL-PKELGFLGNLACLNLENTSSHGT-ITR-QLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHL 434 (577)
Q Consensus 358 i~~l-p~~i~~L~~L~~L~l~~~~~l~~-lp~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 434 (577)
+..+ |..++++++|++|++++| .+.. +|. ..++++++|++|++++|... .......++++++|
T Consensus 85 l~~~~p~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~-------------~~~~~~~~~~L~~L 150 (844)
T 3j0a_A 85 IYFLHPDAFQGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKNQIR-------------SLYLHPSFGKLNSL 150 (844)
T ss_dssp CCEECTTSSCSCSSCCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESCCCC-------------CCCCCGGGGTCSSC
T ss_pred CcccCHhHccCCcccCEeeCcCC-CCCcccccCccccccCCCCEEECCCCccc-------------ccccchhHhhCCCC
Confidence 9876 778999999999999999 5554 443 33789999999999999721 11122456777777
Q ss_pred ceeEEEecCc
Q 037229 435 NVFSITLKSS 444 (577)
Q Consensus 435 ~~L~l~~~~~ 444 (577)
+.|+++.+..
T Consensus 151 ~~L~Ls~N~i 160 (844)
T 3j0a_A 151 KSIDFSSNQI 160 (844)
T ss_dssp CEEEEESSCC
T ss_pred CEEECCCCcC
Confidence 7777776543
No 46
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.77 E-value=6.4e-18 Score=165.53 Aligned_cols=215 Identities=14% Similarity=0.114 Sum_probs=162.1
Q ss_pred eeEEEEecCCCCCCcCCCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCccc-chhhhcCcCCCEEeccCC
Q 037229 278 TRRVSLKENKIGDLWETPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKL-PSRISRLVSLQHLDLSSS 356 (577)
Q Consensus 278 ~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~L~~~ 356 (577)
.+.+...+..+..+|.. -.++|++|++++|.+..++...|..+++|++|+++++ .++.+ |..++.+++|++|++++|
T Consensus 13 ~~~~~c~~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 13 KVTTSCPQQGLQAVPVG-IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp SCEEECCSSCCSSCCTT-CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSC
T ss_pred CeEEEcCcCCcccCCcC-CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCC
Confidence 35677777777777653 3578999999999988888777889999999999999 88877 678889999999999999
Q ss_pred C-CCcc-cccccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCccC
Q 037229 357 G-ILEL-PKELGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHL 434 (577)
Q Consensus 357 ~-i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 434 (577)
. +..+ |..+..+++|++|++++| .+..++...+.++++|++|++.+|. ........++.+++|
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~--------------l~~~~~~~~~~l~~L 155 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDNA--------------LQALPDDTFRDLGNL 155 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSC--------------CCCCCTTTTTTCTTC
T ss_pred CCccccCHHHhcCCcCCCEEECCCC-cCCEECHhHhhCCcCCCEEECCCCc--------------ccccCHhHhccCCCc
Confidence 6 8877 567889999999999999 6777755448889999999999886 222333457788899
Q ss_pred ceeEEEecCcccccCCCccCccceeeecCCCCCCCcEEEecccCCceEEecccCCCCCCCC--CccCCCCCcceEeeccC
Q 037229 435 NVFSITLKSSYALQKPNSEHTRSLEVLPLAEMRQLDKLHIAFCTRLQEFEIECPGRNLMDL--TWLIFAPNFRKIDINQS 512 (577)
Q Consensus 435 ~~L~l~~~~~~~l~~l~~~~l~~L~~~~l~~l~~L~~L~l~~~~~l~~l~l~~~~~~l~~l--~~l~~l~~L~~L~l~~~ 512 (577)
+.|+++.+....+.. ..+..+++|+.|+++++. +... .+++.+++|+.|++++|
T Consensus 156 ~~L~l~~n~l~~~~~-----------~~~~~l~~L~~L~l~~n~-------------l~~~~~~~~~~l~~L~~L~l~~n 211 (285)
T 1ozn_A 156 THLFLHGNRISSVPE-----------RAFRGLHSLDRLLLHQNR-------------VAHVHPHAFRDLGRLMTLYLFAN 211 (285)
T ss_dssp CEEECCSSCCCEECT-----------TTTTTCTTCCEEECCSSC-------------CCEECTTTTTTCTTCCEEECCSS
T ss_pred cEEECCCCcccccCH-----------HHhcCccccCEEECCCCc-------------ccccCHhHccCcccccEeeCCCC
Confidence 999988765443322 125667888888888763 2222 25677888899998888
Q ss_pred CCcceecC---C-CcccEEecCCcc
Q 037229 513 SHMEEIIC---I-DRLRKVSGGYKK 533 (577)
Q Consensus 513 ~~~~~~~~---~-~~L~~L~l~~~~ 533 (577)
........ . ++|+.|++++++
T Consensus 212 ~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 212 NLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp CCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred cCCcCCHHHcccCcccCEEeccCCC
Confidence 64432221 1 788888888754
No 47
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.77 E-value=4.4e-18 Score=177.46 Aligned_cols=216 Identities=18% Similarity=0.148 Sum_probs=175.9
Q ss_pred CeeEEEEecCCCCCCcC--CCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccch-hhhcCcCCCEEec
Q 037229 277 GTRRVSLKENKIGDLWE--TPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPS-RISRLVSLQHLDL 353 (577)
Q Consensus 277 ~~r~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~L 353 (577)
.++.+.++++.+..++. ...+++|++|++++|.+..++...|..+++|++|+|++| .++.+|. .+..+++|++|+|
T Consensus 65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEEEC
T ss_pred CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCceeeC
Confidence 38899999999987764 488999999999999999998888999999999999999 9999976 6899999999999
Q ss_pred cCCCCCcccc-cccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCc
Q 037229 354 SSSGILELPK-ELGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLK 432 (577)
Q Consensus 354 ~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 432 (577)
++|.+..+|. .+.++++|++|++++|..+..++.+.+.++++|++|++.+|.. . .+..+..++
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l--------------~--~~~~~~~l~ 207 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL--------------R--EIPNLTPLI 207 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCC--------------S--SCCCCTTCS
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcC--------------c--cccccCCCc
Confidence 9999999887 5889999999999998788889886689999999999999971 1 234588899
Q ss_pred cCceeEEEecCcccccCCCccCccceeeecCCCCCCCcEEEecccCCceEEecccCCCCCCCC--CccCCCCCcceEeec
Q 037229 433 HLNVFSITLKSSYALQKPNSEHTRSLEVLPLAEMRQLDKLHIAFCTRLQEFEIECPGRNLMDL--TWLIFAPNFRKIDIN 510 (577)
Q Consensus 433 ~L~~L~l~~~~~~~l~~l~~~~l~~L~~~~l~~l~~L~~L~l~~~~~l~~l~l~~~~~~l~~l--~~l~~l~~L~~L~l~ 510 (577)
+|+.|+++.+....+.. ..+..+++|+.|+++++. +..+ ..+..+++|+.|+|+
T Consensus 208 ~L~~L~Ls~N~l~~~~~-----------~~~~~l~~L~~L~L~~n~-------------l~~~~~~~~~~l~~L~~L~L~ 263 (440)
T 3zyj_A 208 KLDELDLSGNHLSAIRP-----------GSFQGLMHLQKLWMIQSQ-------------IQVIERNAFDNLQSLVEINLA 263 (440)
T ss_dssp SCCEEECTTSCCCEECT-----------TTTTTCTTCCEEECTTCC-------------CCEECTTSSTTCTTCCEEECT
T ss_pred ccCEEECCCCccCccCh-----------hhhccCccCCEEECCCCc-------------eeEEChhhhcCCCCCCEEECC
Confidence 99999998776443321 236678899999998763 3322 256788999999999
Q ss_pred cCCCcceecCC----CcccEEecCCcc
Q 037229 511 QSSHMEEIICI----DRLRKVSGGYKK 533 (577)
Q Consensus 511 ~~~~~~~~~~~----~~L~~L~l~~~~ 533 (577)
+|......... ++|+.|+|++++
T Consensus 264 ~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 264 HNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred CCCCCccChhHhccccCCCEEEcCCCC
Confidence 88644322221 889999998744
No 48
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.77 E-value=1.3e-17 Score=174.62 Aligned_cols=224 Identities=17% Similarity=0.139 Sum_probs=178.9
Q ss_pred CccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCccc-chhhhcCcCCCEEeccCCCCCccc-ccccCCCcCcEecc
Q 037229 299 QLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKL-PSRISRLVSLQHLDLSSSGILELP-KELGFLGNLACLNL 376 (577)
Q Consensus 299 ~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~l 376 (577)
..+.++..+..+..+|..+ .++|++|+|+++ .+..+ |..++++++|++|+|++|.+..++ ..+.++++|++|++
T Consensus 55 ~~~~v~c~~~~l~~iP~~~---~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGI---PSNTRYLNLMEN-NIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL 130 (452)
T ss_dssp SSCEEECCSSCCSSCCSCC---CTTCSEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCcEEEECCCCcCccCCCC---CCCccEEECcCC-cCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence 4578888888888999863 368999999999 99987 668999999999999999999877 56899999999999
Q ss_pred cccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCccCceeEEEecCcccccCCCccCcc
Q 037229 377 ENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHLNVFSITLKSSYALQKPNSEHTR 456 (577)
Q Consensus 377 ~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~l~~~~l~ 456 (577)
++| .+..+|.+.+.++++|++|++++|. ........+..+++|+.|+++.+ ..+..+..
T Consensus 131 ~~n-~l~~~~~~~~~~l~~L~~L~L~~N~--------------l~~~~~~~~~~l~~L~~L~l~~~--~~l~~i~~---- 189 (452)
T 3zyi_A 131 FDN-WLTVIPSGAFEYLSKLRELWLRNNP--------------IESIPSYAFNRVPSLMRLDLGEL--KKLEYISE---- 189 (452)
T ss_dssp CSS-CCSBCCTTTSSSCTTCCEEECCSCC--------------CCEECTTTTTTCTTCCEEECCCC--TTCCEECT----
T ss_pred CCC-cCCccChhhhcccCCCCEEECCCCC--------------cceeCHhHHhcCCcccEEeCCCC--CCccccCh----
Confidence 999 7889988768899999999999997 23333456788999999998842 22222211
Q ss_pred ceeeecCCCCCCCcEEEecccCCceEEecccCCCCCCCCCccCCCCCcceEeeccCCCcceecCC----CcccEEecCCc
Q 037229 457 SLEVLPLAEMRQLDKLHIAFCTRLQEFEIECPGRNLMDLTWLIFAPNFRKIDINQSSHMEEIICI----DRLRKVSGGYK 532 (577)
Q Consensus 457 ~L~~~~l~~l~~L~~L~l~~~~~l~~l~l~~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~~~~~~----~~L~~L~l~~~ 532 (577)
..+..+++|++|+++++ .+..++.+..+++|+.|+|++|......+.. ++|+.|+++++
T Consensus 190 ----~~~~~l~~L~~L~L~~n-------------~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n 252 (452)
T 3zyi_A 190 ----GAFEGLFNLKYLNLGMC-------------NIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS 252 (452)
T ss_dssp ----TTTTTCTTCCEEECTTS-------------CCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTS
T ss_pred ----hhccCCCCCCEEECCCC-------------cccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCC
Confidence 13667899999999887 6667777889999999999999855443332 99999999996
Q ss_pred ccccccc-cCCCCCCCcceEeeecCCCCCcCCCCC
Q 037229 533 KILKRIY-PDVLPLKNLKGITVSSCPNLKRLPLNS 566 (577)
Q Consensus 533 ~~l~~l~-~~~~~~~~L~~L~i~~c~~L~~lp~~~ 566 (577)
. +..++ .....+++|+.|+++++ +|..+|...
T Consensus 253 ~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~ 285 (452)
T 3zyi_A 253 Q-VSLIERNAFDGLASLVELNLAHN-NLSSLPHDL 285 (452)
T ss_dssp C-CCEECTTTTTTCTTCCEEECCSS-CCSCCCTTS
T ss_pred c-CceECHHHhcCCCCCCEEECCCC-cCCccChHH
Confidence 5 55554 44567999999999987 777777644
No 49
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.77 E-value=4.3e-18 Score=189.91 Aligned_cols=258 Identities=17% Similarity=0.138 Sum_probs=158.5
Q ss_pred eeEEEEecCCCCC-CcC-CCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCc-ccchhhhcCcCCCEEecc
Q 037229 278 TRRVSLKENKIGD-LWE-TPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLE-KLPSRISRLVSLQHLDLS 354 (577)
Q Consensus 278 ~r~l~l~~~~~~~-l~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~-~lp~~i~~l~~L~~L~L~ 354 (577)
++.+.+.++.+.. +|. ...+++|++|++.+|.+....+..+..+++|++|++++| .+. .+|..++.+++|++|+++
T Consensus 396 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~L~ 474 (768)
T 3rgz_A 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN-MLEGEIPQELMYVKTLETLILD 474 (768)
T ss_dssp CCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS-CCCSCCCGGGGGCTTCCEEECC
T ss_pred ccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCC-cccCcCCHHHcCCCCceEEEec
Confidence 5555555555442 222 256667777777777655333334667777777777777 555 557677777777777777
Q ss_pred CCCCC-cccccccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCcc
Q 037229 355 SSGIL-ELPKELGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKH 433 (577)
Q Consensus 355 ~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 433 (577)
+|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++.+|. .....+..++.+++
T Consensus 475 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~L~~N~--------------l~~~~p~~l~~l~~ 539 (768)
T 3rgz_A 475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW-IGRLENLAILKLSNNS--------------FSGNIPAELGDCRS 539 (768)
T ss_dssp SSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSC--------------CEEECCGGGGGCTT
T ss_pred CCcccCcCCHHHhcCCCCCEEEccCCccCCcCChH-HhcCCCCCEEECCCCc--------------ccCcCCHHHcCCCC
Confidence 77766 56667777777777777777333356665 7777777777777776 34456777888888
Q ss_pred CceeEEEecCcc-cccCCCccC------------------------------------------c-------------cc
Q 037229 434 LNVFSITLKSSY-ALQKPNSEH------------------------------------------T-------------RS 457 (577)
Q Consensus 434 L~~L~l~~~~~~-~l~~l~~~~------------------------------------------l-------------~~ 457 (577)
|+.|+++.+... .++...... + ..
T Consensus 540 L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~ 619 (768)
T 3rgz_A 540 LIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRV 619 (768)
T ss_dssp CCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCE
T ss_pred CCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccce
Confidence 888888765432 111100000 0 00
Q ss_pred ee---eecCCCCCCCcEEEecccCCceEEecccCCCCCC-CCC-ccCCCCCcceEeeccCCCcceecCC----CcccEEe
Q 037229 458 LE---VLPLAEMRQLDKLHIAFCTRLQEFEIECPGRNLM-DLT-WLIFAPNFRKIDINQSSHMEEIICI----DRLRKVS 528 (577)
Q Consensus 458 L~---~~~l~~l~~L~~L~l~~~~~l~~l~l~~~~~~l~-~l~-~l~~l~~L~~L~l~~~~~~~~~~~~----~~L~~L~ 528 (577)
+. ...+..+++|+.|+++++ .+. .+| .++.+++|+.|+|++|.....++.. ++|+.|+
T Consensus 620 ~~g~~~~~~~~l~~L~~LdLs~N-------------~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~Ld 686 (768)
T 3rgz_A 620 YGGHTSPTFDNNGSMMFLDMSYN-------------MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD 686 (768)
T ss_dssp EEEECCCSCSSSBCCCEEECCSS-------------CCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred ecccCchhhhccccccEEECcCC-------------cccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEE
Confidence 00 112445566777777665 333 223 5677777777777777665555443 7777777
Q ss_pred cCCcccccccccCCCCCCCcceEeeecCCCCCcCCC
Q 037229 529 GGYKKILKRIYPDVLPLKNLKGITVSSCPNLKRLPL 564 (577)
Q Consensus 529 l~~~~~l~~l~~~~~~~~~L~~L~i~~c~~L~~lp~ 564 (577)
|+++.--..+|.....+++|++|++++++--..+|.
T Consensus 687 Ls~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 687 LSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp CCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred CCCCcccCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence 777664446666666777777777776643334443
No 50
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.77 E-value=3.6e-18 Score=185.82 Aligned_cols=242 Identities=16% Similarity=0.084 Sum_probs=146.6
Q ss_pred eeEEEEecCCCCCCcCCCCCCCccEEeCccCCCCCcch-------------------hhcCCCCcccEEEccCCCCCccc
Q 037229 278 TRRVSLKENKIGDLWETPTSPQLLTLFLNINPLSMIGG-------------------DLFQFKPCLKVLNLSNSPCLEKL 338 (577)
Q Consensus 278 ~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~-------------------~~~~~l~~L~~L~L~~~~~l~~l 338 (577)
++.+.+.++.+..++....+++|++|.+.+|.+..+|. ..+..+++|++|++++| .+..+
T Consensus 287 L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n-~l~~~ 365 (606)
T 3vq2_A 287 VSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRN-ALSFS 365 (606)
T ss_dssp CSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSS-CEEEE
T ss_pred CCEEEecCccchhhhhccccccCCEEEcccccCcccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCC-ccCCC
Confidence 45555555555555544445555555555555444441 01345556666666666 55544
Q ss_pred ---chhhhcCcCCCEEeccCCCCCcccccccCCCcCcEecccccccccccch-HHhcCCCCCcEEEeeeecCcccccccc
Q 037229 339 ---PSRISRLVSLQHLDLSSSGILELPKELGFLGNLACLNLENTSSHGTITR-QLRSNFSKPQVLRMFRFYGKAQYMKAD 414 (577)
Q Consensus 339 ---p~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~~~~~~~~~ 414 (577)
|..++.+++|++|++++|.+..+|..+..+++|++|++++| .+...+. ..+.++++|++|++++|.
T Consensus 366 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~--------- 435 (606)
T 3vq2_A 366 GCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHS-TLKRVTEFSAFLSLEKLLYLDISYTN--------- 435 (606)
T ss_dssp EECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTS-EEESTTTTTTTTTCTTCCEEECTTSC---------
T ss_pred cchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCC-ccCCccChhhhhccccCCEEECcCCC---------
Confidence 55566666666666666666666666666666666666666 3433332 225666666666666665
Q ss_pred cCCccCcccccccccCCccCceeEEEecCcccccCCCccCccceeeecCCCCCCCcEEEecccCCceEEecccCCCCCCC
Q 037229 415 SLPFGGSEFLVEQLCCLKHLNVFSITLKSSYALQKPNSEHTRSLEVLPLAEMRQLDKLHIAFCTRLQEFEIECPGRNLMD 494 (577)
Q Consensus 415 ~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~l~~~~l~~L~~~~l~~l~~L~~L~l~~~~~l~~l~l~~~~~~l~~ 494 (577)
.....+..++.+++|+.|+++.+...... . ...+..+++|+.|++++|. +..
T Consensus 436 -----l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~---------~~~~~~l~~L~~L~Ls~n~-------------l~~ 487 (606)
T 3vq2_A 436 -----TKIDFDGIFLGLTSLNTLKMAGNSFKDNT-L---------SNVFANTTNLTFLDLSKCQ-------------LEQ 487 (606)
T ss_dssp -----CEECCTTTTTTCTTCCEEECTTCEEGGGE-E---------CSCCTTCTTCCEEECTTSC-------------CCE
T ss_pred -----CCccchhhhcCCCCCCEEECCCCcCCCcc-h---------HHhhccCCCCCEEECCCCc-------------CCc
Confidence 23334455666677777776654332100 0 0125667888888888763 322
Q ss_pred C--CccCCCCCcceEeeccCCCcceecCC----CcccEEecCCcccccccccCCCCCC-CcceEeeecCCCC
Q 037229 495 L--TWLIFAPNFRKIDINQSSHMEEIICI----DRLRKVSGGYKKILKRIYPDVLPLK-NLKGITVSSCPNL 559 (577)
Q Consensus 495 l--~~l~~l~~L~~L~l~~~~~~~~~~~~----~~L~~L~l~~~~~l~~l~~~~~~~~-~L~~L~i~~c~~L 559 (577)
. .+++.+++|+.|++++|......+.. ++|+.|+++++. ++.+|.....+| +|++|+++++|-.
T Consensus 488 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 488 ISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSCCCC
T ss_pred cChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCCCcc
Confidence 2 25678899999999998765543332 889999999875 778888777787 5999999876533
No 51
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.76 E-value=1.6e-17 Score=178.86 Aligned_cols=242 Identities=16% Similarity=0.161 Sum_probs=157.4
Q ss_pred eeEEEEecCCCCCCcCCCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchhhhcCcCCCEEeccCCC
Q 037229 278 TRRVSLKENKIGDLWETPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSSSG 357 (577)
Q Consensus 278 ~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~ 357 (577)
++.+.+.++.+..+|.... ++|++|++++|.+..+|. .+++|++|+|++| .++.+|. .+++|++|++++|.
T Consensus 42 l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N~ 112 (622)
T 3g06_A 42 NAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA----LPPELRTLEVSGN-QLTSLPV---LPPGLLELSIFSNP 112 (622)
T ss_dssp CCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC----CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEECSCC
T ss_pred CcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEECcCCc
Confidence 6788888888888776543 788888888888887776 4678888888888 8888886 67888888888888
Q ss_pred CCcccccccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeecCcccc-cccccCCccCcccccccc-cCCccCc
Q 037229 358 ILELPKELGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQY-MKADSLPFGGSEFLVEQL-CCLKHLN 435 (577)
Q Consensus 358 i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~~~~~~~~l-~~L~~L~ 435 (577)
++.+|. .+.+|++|++++| .+..+|.. +++|++|++++|...+++ ....+..+......+..+ ..+++|+
T Consensus 113 l~~l~~---~l~~L~~L~L~~N-~l~~lp~~----l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~ 184 (622)
T 3g06_A 113 LTHLPA---LPSGLCKLWIFGN-QLTSLPVL----PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQ 184 (622)
T ss_dssp CCCCCC---CCTTCCEEECCSS-CCSCCCCC----CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCC
T ss_pred CCCCCC---CCCCcCEEECCCC-CCCcCCCC----CCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCc
Confidence 888877 5678888888888 67777763 478888888887632211 000000000000000001 2236667
Q ss_pred eeEEEecCcccccCCCccCccceeeecCCCCCCCcEEEeccc---------CCceEEecccCCCCCCCCCccCCCCCcce
Q 037229 436 VFSITLKSSYALQKPNSEHTRSLEVLPLAEMRQLDKLHIAFC---------TRLQEFEIECPGRNLMDLTWLIFAPNFRK 506 (577)
Q Consensus 436 ~L~l~~~~~~~l~~l~~~~l~~L~~~~l~~l~~L~~L~l~~~---------~~l~~l~l~~~~~~l~~l~~l~~l~~L~~ 506 (577)
.|+++.+....++.. +++|+.|++.++ ..++.+.++.+ .++.+| ..+++|+.
T Consensus 185 ~L~Ls~N~l~~l~~~---------------~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N--~L~~lp--~~l~~L~~ 245 (622)
T 3g06_A 185 ELSVSDNQLASLPTL---------------PSELYKLWAYNNRLTSLPALPSGLKELIVSGN--RLTSLP--VLPSELKE 245 (622)
T ss_dssp EEECCSSCCSCCCCC---------------CTTCCEEECCSSCCSSCCCCCTTCCEEECCSS--CCSCCC--CCCTTCCE
T ss_pred EEECCCCCCCCCCCc---------------cchhhEEECcCCcccccCCCCCCCCEEEccCC--ccCcCC--CCCCcCcE
Confidence 777766654443332 223333333332 22333333333 556555 45688888
Q ss_pred EeeccCCCcceecCC-CcccEEecCCcccccccccCCCCCCCcceEeeecCC
Q 037229 507 IDINQSSHMEEIICI-DRLRKVSGGYKKILKRIYPDVLPLKNLKGITVSSCP 557 (577)
Q Consensus 507 L~l~~~~~~~~~~~~-~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~ 557 (577)
|++++|. +..++.. ++|+.|++++| .+..+|.....+++|+.|++++++
T Consensus 246 L~Ls~N~-L~~lp~~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 246 LMVSGNR-LTSLPMLPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp EECCSSC-CSCCCCCCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCC
T ss_pred EECCCCC-CCcCCcccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCC
Confidence 8888875 3344434 78888888886 477887777778888888888775
No 52
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.76 E-value=3.5e-18 Score=186.39 Aligned_cols=250 Identities=10% Similarity=0.113 Sum_probs=125.3
Q ss_pred eeEEEEecCCCCCCcC---CCCCCCccEEeCccCCCC-CcchhhcCCCCcccEEEccCCCCCcccchhhhcCcC-CCEEe
Q 037229 278 TRRVSLKENKIGDLWE---TPTSPQLLTLFLNINPLS-MIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVS-LQHLD 352 (577)
Q Consensus 278 ~r~l~l~~~~~~~l~~---~~~~~~Lr~L~l~~~~~~-~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~-L~~L~ 352 (577)
++.+.+.++.+..+|. ...+++|++|++++|.+. .+| . +..+++|++|++++| .+..+|..++.+++ |++|+
T Consensus 307 L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~~L~~L~ 383 (636)
T 4eco_A 307 IQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSEIKLASLNLAYN-QITEIPANFCGFTEQVENLS 383 (636)
T ss_dssp CCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEEEEESEEECCSS-EEEECCTTSEEECTTCCEEE
T ss_pred CCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-h-hCCCCCCCEEECCCC-ccccccHhhhhhcccCcEEE
Confidence 4445555544444443 244445555555555444 444 1 444445555555555 44444444445544 55555
Q ss_pred ccCCCCCcccccccCCC--cCcEecccccccccccchHHhc-------CCCCCcEEEeeeecCcccccccccCCccCccc
Q 037229 353 LSSSGILELPKELGFLG--NLACLNLENTSSHGTITRQLRS-------NFSKPQVLRMFRFYGKAQYMKADSLPFGGSEF 423 (577)
Q Consensus 353 L~~~~i~~lp~~i~~L~--~L~~L~l~~~~~l~~lp~~~i~-------~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 423 (577)
+++|.+..+|..++.+. +|++|++++|.....+|.. +. .+++|++|++++|. .. .
T Consensus 384 Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-l~~~~~~~~~~~~L~~L~Ls~N~--------------l~-~ 447 (636)
T 4eco_A 384 FAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN-FDPLDPTPFKGINVSSINLSNNQ--------------IS-K 447 (636)
T ss_dssp CCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCS-SCTTCSSCCCCCCEEEEECCSSC--------------CC-S
T ss_pred ccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhh-hcccccccccCCCCCEEECcCCc--------------cC-c
Confidence 55554444444443332 4444444444211222222 33 33444444444443 11 1
Q ss_pred cccc-ccCCccCceeEEEecCcccccCCCcc----------Ccccee---------eecCC--CCCCCcEEEecccCCce
Q 037229 424 LVEQ-LCCLKHLNVFSITLKSSYALQKPNSE----------HTRSLE---------VLPLA--EMRQLDKLHIAFCTRLQ 481 (577)
Q Consensus 424 ~~~~-l~~L~~L~~L~l~~~~~~~l~~l~~~----------~l~~L~---------~~~l~--~l~~L~~L~l~~~~~l~ 481 (577)
.+.. +..+++|+.|+++.+....++..... .++.|. ...+. .+++|+.|+++++
T Consensus 448 lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N---- 523 (636)
T 4eco_A 448 FPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYN---- 523 (636)
T ss_dssp CCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSS----
T ss_pred CCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCC----
Confidence 2222 23456666666665544433221111 011111 00111 4455555555554
Q ss_pred EEecccCCCCCCCCC-ccCCCCCcceEeecc------CCCcceecCC----CcccEEecCCcccccccccCCCCCCCcce
Q 037229 482 EFEIECPGRNLMDLT-WLIFAPNFRKIDINQ------SSHMEEIICI----DRLRKVSGGYKKILKRIYPDVLPLKNLKG 550 (577)
Q Consensus 482 ~l~l~~~~~~l~~l~-~l~~l~~L~~L~l~~------~~~~~~~~~~----~~L~~L~l~~~~~l~~l~~~~~~~~~L~~ 550 (577)
.+..+| .++.+++|+.|+|++ |.....++.. ++|+.|+++++. +..+|... +++|++
T Consensus 524 ---------~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~~--~~~L~~ 591 (636)
T 4eco_A 524 ---------SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND-IRKVNEKI--TPNISV 591 (636)
T ss_dssp ---------CCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSCC--CTTCCE
T ss_pred ---------CCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc-CCccCHhH--hCcCCE
Confidence 555555 677899999999965 3333344333 889999999876 58887653 389999
Q ss_pred EeeecCCCCCcCC
Q 037229 551 ITVSSCPNLKRLP 563 (577)
Q Consensus 551 L~i~~c~~L~~lp 563 (577)
|++++|+ +..++
T Consensus 592 L~Ls~N~-l~~~~ 603 (636)
T 4eco_A 592 LDIKDNP-NISID 603 (636)
T ss_dssp EECCSCT-TCEEE
T ss_pred EECcCCC-Ccccc
Confidence 9999884 33443
No 53
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.76 E-value=1.2e-17 Score=180.15 Aligned_cols=128 Identities=21% Similarity=0.197 Sum_probs=105.7
Q ss_pred cCeeEEEEecCCCCCCcC--CCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccch-hhhcCcCCCEEe
Q 037229 276 EGTRRVSLKENKIGDLWE--TPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPS-RISRLVSLQHLD 352 (577)
Q Consensus 276 ~~~r~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~ 352 (577)
..++++.+.++.+..++. ...+++|++|++.+|.+..+++..|..+++|++|+++++ .+..+|. .++++++|++|+
T Consensus 52 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~ 130 (570)
T 2z63_A 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELN 130 (570)
T ss_dssp SSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS-CCCCSTTCSCTTCTTCCEEE
T ss_pred CCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccc-ccccCCCccccccccccEEe
Confidence 348999999998887764 478999999999999988888777999999999999999 8998875 689999999999
Q ss_pred ccCCCCCc--ccccccCCCcCcEecccccccccccchHHhcCCCCC----cEEEeeeec
Q 037229 353 LSSSGILE--LPKELGFLGNLACLNLENTSSHGTITRQLRSNFSKP----QVLRMFRFY 405 (577)
Q Consensus 353 L~~~~i~~--lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L----~~L~l~~~~ 405 (577)
+++|.+.. +|..++++++|++|++++| .+..++...++.+++| ++|++.+|.
T Consensus 131 L~~n~l~~~~lp~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~~~~~L~l~~n~ 188 (570)
T 2z63_A 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (570)
T ss_dssp CCSSCCCCCCCCGGGGGCTTCCEEECTTS-CCCEECGGGGHHHHTCTTCCCEEECTTCC
T ss_pred cCCCccceecChhhhcccCCCCEEeCcCC-ccceecHHHccchhccchhhhhcccCCCC
Confidence 99998885 7889999999999999998 6666654336666666 566665554
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.76 E-value=3.8e-18 Score=168.92 Aligned_cols=216 Identities=21% Similarity=0.203 Sum_probs=175.2
Q ss_pred CeeEEEEecCCCCCCcC--CCCCCCccEEeCccCCCCCc---chhhcCCCCcccEEEccCCCCCcccchhhhcCcCCCEE
Q 037229 277 GTRRVSLKENKIGDLWE--TPTSPQLLTLFLNINPLSMI---GGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHL 351 (577)
Q Consensus 277 ~~r~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~---~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L 351 (577)
.++++.+.++.+..++. ...+++|++|++.+|.+..+ +.. +..+++|++|++++| .+..+|..+..+++|++|
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~~~L~~L~Ls~n-~i~~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS-DFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHL 106 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH-HHSCSCCCEEECCSC-SEEEEEEEEETCTTCCEE
T ss_pred CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccc-cccccccCEEECCCC-ccccChhhcCCCCCCCEE
Confidence 48999999999998887 37899999999999987655 344 567999999999999 999999899999999999
Q ss_pred eccCCCCCcccc--cccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcc-cccccc
Q 037229 352 DLSSSGILELPK--ELGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSE-FLVEQL 428 (577)
Q Consensus 352 ~L~~~~i~~lp~--~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~~~~l 428 (577)
++++|.+..+|. .+..+++|++|++++| .+...+...+.++++|++|++.+|. ... ..+..+
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~--------------l~~~~~~~~~ 171 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNS--------------FQENFLPDIF 171 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTS-CCEECSTTTTTTCTTCCEEECTTCE--------------EGGGEECSCC
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCC-cCCccchhhcccCcCCCEEECCCCc--------------cccccchhHH
Confidence 999999998875 6899999999999999 5665554448899999999999987 222 356778
Q ss_pred cCCccCceeEEEecCcccccCCCccCccceeeecCCCCCCCcEEEecccCCceEEecccCCCCCCCCC--ccCCCCCcce
Q 037229 429 CCLKHLNVFSITLKSSYALQKPNSEHTRSLEVLPLAEMRQLDKLHIAFCTRLQEFEIECPGRNLMDLT--WLIFAPNFRK 506 (577)
Q Consensus 429 ~~L~~L~~L~l~~~~~~~l~~l~~~~l~~L~~~~l~~l~~L~~L~l~~~~~l~~l~l~~~~~~l~~l~--~l~~l~~L~~ 506 (577)
..+++|+.|+++.+....+.. ..+..+++|+.|+++++ .+..++ .+..+++|+.
T Consensus 172 ~~l~~L~~L~Ls~n~l~~~~~-----------~~~~~l~~L~~L~L~~N-------------~l~~~~~~~~~~l~~L~~ 227 (306)
T 2z66_A 172 TELRNLTFLDLSQCQLEQLSP-----------TAFNSLSSLQVLNMSHN-------------NFFSLDTFPYKCLNSLQV 227 (306)
T ss_dssp TTCTTCCEEECTTSCCCEECT-----------TTTTTCTTCCEEECTTS-------------CCSBCCSGGGTTCTTCCE
T ss_pred hhCcCCCEEECCCCCcCCcCH-----------HHhcCCCCCCEEECCCC-------------ccCccChhhccCcccCCE
Confidence 899999999998776443211 13567899999999987 444433 4678999999
Q ss_pred EeeccCCCcceecCC-----CcccEEecCCcc
Q 037229 507 IDINQSSHMEEIICI-----DRLRKVSGGYKK 533 (577)
Q Consensus 507 L~l~~~~~~~~~~~~-----~~L~~L~l~~~~ 533 (577)
|++++|......+.. ++|++|++++++
T Consensus 228 L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 228 LDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp EECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred eECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 999999865544332 489999999865
No 55
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.76 E-value=2.4e-17 Score=165.06 Aligned_cols=233 Identities=19% Similarity=0.229 Sum_probs=160.2
Q ss_pred CeeEEEEecCCCCCCcC--CCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchhhhcCcCCCEEecc
Q 037229 277 GTRRVSLKENKIGDLWE--TPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLS 354 (577)
Q Consensus 277 ~~r~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~ 354 (577)
.++.+.+.++.+..++. ...+++|++|++.+|.+..+++..|..+++|++|++++| .++.+|..+. ++|++|+++
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~--~~L~~L~l~ 129 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPEKMP--KTLQELRVH 129 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCSSCC--TTCCEEECC
T ss_pred CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC-cCCccChhhc--ccccEEECC
Confidence 48899999999988875 488999999999999998886666999999999999999 9999987765 799999999
Q ss_pred CCCCCccccc-ccCCCcCcEeccccccccc---ccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccC
Q 037229 355 SSGILELPKE-LGFLGNLACLNLENTSSHG---TITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCC 430 (577)
Q Consensus 355 ~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~---~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 430 (577)
+|.+..++.. +.++++|++|++++| .+. ..+.. +.++++|++|++.+|... ..+..+.
T Consensus 130 ~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~-~~~l~~L~~L~l~~n~l~---------------~l~~~~~- 191 (330)
T 1xku_A 130 ENEITKVRKSVFNGLNQMIVVELGTN-PLKSSGIENGA-FQGMKKLSYIRIADTNIT---------------TIPQGLP- 191 (330)
T ss_dssp SSCCCBBCHHHHTTCTTCCEEECCSS-CCCGGGBCTTG-GGGCTTCCEEECCSSCCC---------------SCCSSCC-
T ss_pred CCcccccCHhHhcCCccccEEECCCC-cCCccCcChhh-ccCCCCcCEEECCCCccc---------------cCCcccc-
Confidence 9999988765 889999999999999 554 23444 889999999999998722 1222221
Q ss_pred CccCceeEEEecCcccccCCCccCccceeeecCCCCCCCcEEEecccCCceEEecccCCCCCCCCC--ccCCCCCcceEe
Q 037229 431 LKHLNVFSITLKSSYALQKPNSEHTRSLEVLPLAEMRQLDKLHIAFCTRLQEFEIECPGRNLMDLT--WLIFAPNFRKID 508 (577)
Q Consensus 431 L~~L~~L~l~~~~~~~l~~l~~~~l~~L~~~~l~~l~~L~~L~l~~~~~l~~l~l~~~~~~l~~l~--~l~~l~~L~~L~ 508 (577)
++|+.|+++.+....+.. ..+..+++|+.|+++++. +..++ +++.+++|+.|+
T Consensus 192 -~~L~~L~l~~n~l~~~~~-----------~~~~~l~~L~~L~Ls~n~-------------l~~~~~~~~~~l~~L~~L~ 246 (330)
T 1xku_A 192 -PSLTELHLDGNKITKVDA-----------ASLKGLNNLAKLGLSFNS-------------ISAVDNGSLANTPHLRELH 246 (330)
T ss_dssp -TTCSEEECTTSCCCEECT-----------GGGTTCTTCCEEECCSSC-------------CCEECTTTGGGSTTCCEEE
T ss_pred -ccCCEEECCCCcCCccCH-----------HHhcCCCCCCEEECCCCc-------------CceeChhhccCCCCCCEEE
Confidence 567777766554332211 124456666666666552 22211 345566666666
Q ss_pred eccCCCcceecCC----CcccEEecCCcccccccccCCC-------CCCCcceEeeecCC
Q 037229 509 INQSSHMEEIICI----DRLRKVSGGYKKILKRIYPDVL-------PLKNLKGITVSSCP 557 (577)
Q Consensus 509 l~~~~~~~~~~~~----~~L~~L~l~~~~~l~~l~~~~~-------~~~~L~~L~i~~c~ 557 (577)
+++|... .++.. ++|++|+++++. ++.++.... .++.|+.|++.+.|
T Consensus 247 L~~N~l~-~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 247 LNNNKLV-KVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp CCSSCCS-SCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred CCCCcCc-cCChhhccCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecCc
Confidence 6666433 33221 666666666543 444443221 23556666665554
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.75 E-value=3.9e-18 Score=167.03 Aligned_cols=200 Identities=20% Similarity=0.228 Sum_probs=165.7
Q ss_pred CeeEEEEecCCCCCCcC--CCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCccc-chhhhcCcCCCEEec
Q 037229 277 GTRRVSLKENKIGDLWE--TPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKL-PSRISRLVSLQHLDL 353 (577)
Q Consensus 277 ~~r~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~L 353 (577)
.++++.+.++.+..++. ...+++|++|++.+|.+..+++..|..+++|++|++++|..+..+ |..+..+++|++|++
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l 112 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence 48999999999988775 478999999999999988887767999999999999999338888 678999999999999
Q ss_pred cCCCCCcc-cccccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCc
Q 037229 354 SSSGILEL-PKELGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLK 432 (577)
Q Consensus 354 ~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 432 (577)
++|.+..+ |..+.++++|++|++++| .+..+|...++++++|++|++.+|. ........+..++
T Consensus 113 ~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~--------------l~~~~~~~~~~l~ 177 (285)
T 1ozn_A 113 DRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGNR--------------ISSVPERAFRGLH 177 (285)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC--------------CCEECTTTTTTCT
T ss_pred CCCcCCEECHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCCc--------------ccccCHHHhcCcc
Confidence 99999987 456899999999999999 7888887658899999999999997 2223334578899
Q ss_pred cCceeEEEecCcccccCCCccCccceeeecCCCCCCCcEEEecccCCceEEecccCCCCCCCCC--ccCCCCCcceEeec
Q 037229 433 HLNVFSITLKSSYALQKPNSEHTRSLEVLPLAEMRQLDKLHIAFCTRLQEFEIECPGRNLMDLT--WLIFAPNFRKIDIN 510 (577)
Q Consensus 433 ~L~~L~l~~~~~~~l~~l~~~~l~~L~~~~l~~l~~L~~L~l~~~~~l~~l~l~~~~~~l~~l~--~l~~l~~L~~L~l~ 510 (577)
+|+.|+++.+....... ..+..+++|+.|+++++ .+..++ .+..+++|+.|+++
T Consensus 178 ~L~~L~l~~n~l~~~~~-----------~~~~~l~~L~~L~l~~n-------------~l~~~~~~~~~~l~~L~~L~l~ 233 (285)
T 1ozn_A 178 SLDRLLLHQNRVAHVHP-----------HAFRDLGRLMTLYLFAN-------------NLSALPTEALAPLRALQYLRLN 233 (285)
T ss_dssp TCCEEECCSSCCCEECT-----------TTTTTCTTCCEEECCSS-------------CCSCCCHHHHTTCTTCCEEECC
T ss_pred ccCEEECCCCcccccCH-----------hHccCcccccEeeCCCC-------------cCCcCCHHHcccCcccCEEecc
Confidence 99999999776443311 13567899999999987 555555 57889999999999
Q ss_pred cCCCc
Q 037229 511 QSSHM 515 (577)
Q Consensus 511 ~~~~~ 515 (577)
+|+..
T Consensus 234 ~N~~~ 238 (285)
T 1ozn_A 234 DNPWV 238 (285)
T ss_dssp SSCEE
T ss_pred CCCcc
Confidence 99743
No 57
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.75 E-value=8.1e-18 Score=187.72 Aligned_cols=125 Identities=21% Similarity=0.168 Sum_probs=61.2
Q ss_pred eeEEEEecCCCCCCcCCCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCc-ccchhhhcCcCCCEEeccCC
Q 037229 278 TRRVSLKENKIGDLWETPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLE-KLPSRISRLVSLQHLDLSSS 356 (577)
Q Consensus 278 ~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~-~lp~~i~~l~~L~~L~L~~~ 356 (577)
++.+.+.++.+........+++|++|++.+|.+...++. +..+++|++|++++| .+. .+|..++.+++|++|++++|
T Consensus 180 L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n-~l~~~~~~~l~~l~~L~~L~Ls~n 257 (768)
T 3rgz_A 180 LKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGN-KLSGDFSRAISTCTELKLLNISSN 257 (768)
T ss_dssp CCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSS-CCCSCHHHHTTTCSSCCEEECCSS
T ss_pred CCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCC-cCCCcccHHHhcCCCCCEEECCCC
Confidence 444445444444333334455555555555554433333 455555555555555 444 33444555555555555554
Q ss_pred CCC-----------------------cccccccCC-CcCcEecccccccccccchHHhcCCCCCcEEEeeeec
Q 037229 357 GIL-----------------------ELPKELGFL-GNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFY 405 (577)
Q Consensus 357 ~i~-----------------------~lp~~i~~L-~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 405 (577)
.+. .+|..+..+ ++|++|++++|.....+|.. ++++++|++|++.+|.
T Consensus 258 ~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~ 329 (768)
T 3rgz_A 258 QFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF-FGSCSLLESLALSSNN 329 (768)
T ss_dssp CCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG-GGGCTTCCEEECCSSE
T ss_pred cccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH-HhcCCCccEEECCCCc
Confidence 443 444444443 55555555555222234443 5555555555555554
No 58
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.75 E-value=5.4e-18 Score=178.62 Aligned_cols=213 Identities=16% Similarity=0.129 Sum_probs=130.1
Q ss_pred CCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchhhhcCcCCCEEeccCCCCCcccccccCCCcCcEec
Q 037229 296 TSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSSSGILELPKELGFLGNLACLN 375 (577)
Q Consensus 296 ~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~ 375 (577)
.+++|++|++++|.+..+++..|..+++|++|+|++| .+...++ ++.+++|++|+|++|.+..+|.. ++|++|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~ 105 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNYVQELLVG----PSIETLH 105 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTS-CCEEEEE-CTTCTTCCEEECCSSEEEEEEEC----TTCCEEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCC-CCCCCcc-cccCCCCCEEEecCCcCCCCCCC----CCcCEEE
Confidence 4456777777777777766656777777777777777 7765554 77777777777777777666533 6777777
Q ss_pred ccccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCccCceeEEEecCcccccCCCccCc
Q 037229 376 LENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHLNVFSITLKSSYALQKPNSEHT 455 (577)
Q Consensus 376 l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~l~~~~l 455 (577)
+++| .+..+|.. .+++|++|++++|. .....+..++++++|+.|+++.+.......
T Consensus 106 L~~N-~l~~~~~~---~l~~L~~L~L~~N~--------------l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------ 161 (487)
T 3oja_A 106 AANN-NISRVSCS---RGQGKKNIYLANNK--------------ITMLRDLDEGCRSRVQYLDLKLNEIDTVNF------ 161 (487)
T ss_dssp CCSS-CCCCEEEC---CCSSCEEEECCSSC--------------CCSGGGBCGGGGSSEEEEECTTSCCCEEEG------
T ss_pred CcCC-cCCCCCcc---ccCCCCEEECCCCC--------------CCCCCchhhcCCCCCCEEECCCCCCCCcCh------
Confidence 7777 56666542 46677777777775 233334456667777777776554332110
Q ss_pred cceeeecCC-CCCCCcEEEecccCCceEEecccCCCCCCCCCccCCCCCcceEeeccCCCcceecCC---CcccEEecCC
Q 037229 456 RSLEVLPLA-EMRQLDKLHIAFCTRLQEFEIECPGRNLMDLTWLIFAPNFRKIDINQSSHMEEIICI---DRLRKVSGGY 531 (577)
Q Consensus 456 ~~L~~~~l~-~l~~L~~L~l~~~~~l~~l~l~~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~~~~~~---~~L~~L~l~~ 531 (577)
..+. .+++|+.|+++++ .+..++....+++|+.|+|++|.....++.. ++|+.|++++
T Consensus 162 -----~~l~~~l~~L~~L~Ls~N-------------~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~ 223 (487)
T 3oja_A 162 -----AELAASSDTLEHLNLQYN-------------FIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRN 223 (487)
T ss_dssp -----GGGGGGTTTCCEEECTTS-------------CCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTT
T ss_pred -----HHHhhhCCcccEEecCCC-------------ccccccccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecC
Confidence 0122 4566777777665 3333333345666777777666533222211 6677777766
Q ss_pred cccccccccCCCCCCCcceEeeecCC
Q 037229 532 KKILKRIYPDVLPLKNLKGITVSSCP 557 (577)
Q Consensus 532 ~~~l~~l~~~~~~~~~L~~L~i~~c~ 557 (577)
+ .+..+|.....+++|+.|++++++
T Consensus 224 N-~l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 224 N-KLVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp S-CCCEECTTCCCCTTCCEEECTTCC
T ss_pred C-cCcccchhhccCCCCCEEEcCCCC
Confidence 4 355666655566667777666654
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.75 E-value=4.8e-18 Score=169.05 Aligned_cols=118 Identities=17% Similarity=0.098 Sum_probs=52.0
Q ss_pred eeEEEEecCCCCCCcC--CCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchhhhcCcCCCEEeccC
Q 037229 278 TRRVSLKENKIGDLWE--TPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSS 355 (577)
Q Consensus 278 ~r~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~ 355 (577)
++.+.++++.+..++. ...+++|++|++++|.+..+++ +..+++|++|++++| .++.+| ..++|++|++++
T Consensus 36 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n-~l~~l~----~~~~L~~L~l~~ 108 (317)
T 3o53_A 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELL----VGPSIETLHAAN 108 (317)
T ss_dssp CSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS-EEEEEE----ECTTCCEEECCS
T ss_pred CCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC-cccccc----CCCCcCEEECCC
Confidence 4444444444444331 2344444444444444433333 444444444444444 444333 124444444444
Q ss_pred CCCCcccccccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeec
Q 037229 356 SGILELPKELGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFY 405 (577)
Q Consensus 356 ~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 405 (577)
|.+..++.. .+++|++|++++| .+..++...++.+++|++|++++|.
T Consensus 109 n~l~~~~~~--~~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~ 155 (317)
T 3o53_A 109 NNISRVSCS--RGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNE 155 (317)
T ss_dssp SCCSEEEEC--CCSSCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTSC
T ss_pred CccCCcCcc--ccCCCCEEECCCC-CCCCccchhhhccCCCCEEECCCCC
Confidence 444444322 2344555555544 3444433224444555555554443
No 60
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.74 E-value=2.1e-17 Score=163.62 Aligned_cols=187 Identities=20% Similarity=0.197 Sum_probs=149.0
Q ss_pred eeEEEEecCCCCCCcCCCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchhhhcCcCCCEEeccCCC
Q 037229 278 TRRVSLKENKIGDLWETPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSSSG 357 (577)
Q Consensus 278 ~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~ 357 (577)
++.+.+.++.+..++....+++|++|++++|.+..++. +..+++|++|++++| .+..+| .++.+++|++|++++|.
T Consensus 43 L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~l~~n~ 118 (308)
T 1h6u_A 43 ITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGN-PLKNVS-AIAGLQSIKTLDLTSTQ 118 (308)
T ss_dssp CCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEEECTTSC
T ss_pred cCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCC-cCCCch-hhcCCCCCCEEECCCCC
Confidence 88888888888888877888899999999988888877 788889999999999 888876 68888999999999998
Q ss_pred CCcccccccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCccCcee
Q 037229 358 ILELPKELGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHLNVF 437 (577)
Q Consensus 358 i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L 437 (577)
+..+|. +..+++|++|++++| .+..++. ++++++|++|++.+|. .. . +..+..+++|+.|
T Consensus 119 l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~--------------l~-~-~~~l~~l~~L~~L 178 (308)
T 1h6u_A 119 ITDVTP-LAGLSNLQVLYLDLN-QITNISP--LAGLTNLQYLSIGNAQ--------------VS-D-LTPLANLSKLTTL 178 (308)
T ss_dssp CCCCGG-GTTCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECCSSC--------------CC-C-CGGGTTCTTCCEE
T ss_pred CCCchh-hcCCCCCCEEECCCC-ccCcCcc--ccCCCCccEEEccCCc--------------CC-C-ChhhcCCCCCCEE
Confidence 888875 888899999999988 7788876 8888999999998886 11 1 2227788888888
Q ss_pred EEEecCcccccCCCccCccceeeecCCCCCCCcEEEecccCCceEEecccCCCCCCCCCccCCCCCcceEeeccCCC
Q 037229 438 SITLKSSYALQKPNSEHTRSLEVLPLAEMRQLDKLHIAFCTRLQEFEIECPGRNLMDLTWLIFAPNFRKIDINQSSH 514 (577)
Q Consensus 438 ~l~~~~~~~l~~l~~~~l~~L~~~~l~~l~~L~~L~l~~~~~l~~l~l~~~~~~l~~l~~l~~l~~L~~L~l~~~~~ 514 (577)
+++.+....+.. +..+++|+.|+++++ .+..++.+..+++|+.|++++|..
T Consensus 179 ~l~~n~l~~~~~-------------l~~l~~L~~L~L~~N-------------~l~~~~~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 179 KADDNKISDISP-------------LASLPNLIEVHLKNN-------------QISDVSPLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp ECCSSCCCCCGG-------------GGGCTTCCEEECTTS-------------CCCBCGGGTTCTTCCEEEEEEEEE
T ss_pred ECCCCccCcChh-------------hcCCCCCCEEEccCC-------------ccCccccccCCCCCCEEEccCCee
Confidence 888766443332 345778888888876 555555677888999999988874
No 61
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.74 E-value=1.7e-17 Score=164.32 Aligned_cols=198 Identities=20% Similarity=0.209 Sum_probs=160.5
Q ss_pred CCCCcCCCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchhhhcCcCCCEEeccCCCCCcccccccC
Q 037229 288 IGDLWETPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSSSGILELPKELGF 367 (577)
Q Consensus 288 ~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~ 367 (577)
+........+++|++|.+.++.+..++. +..+++|++|++++| .+..++. +..+++|++|++++|.+..+| .+..
T Consensus 31 ~~~~~~~~~l~~L~~L~l~~~~i~~l~~--~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~ 105 (308)
T 1h6u_A 31 VTDTVTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNPLKNVS-AIAG 105 (308)
T ss_dssp TTSEECHHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTT
T ss_pred cCceecHHHcCCcCEEEeeCCCccCchh--hhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCcCCCch-hhcC
Confidence 3333344678899999999999888874 889999999999999 9999987 999999999999999999986 6999
Q ss_pred CCcCcEecccccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCccCceeEEEecCcccc
Q 037229 368 LGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHLNVFSITLKSSYAL 447 (577)
Q Consensus 368 L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l 447 (577)
+++|++|++++| .+..+|. +..+++|++|++++|.. . .+..+..+++|+.|+++.+....+
T Consensus 106 l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l--------------~--~~~~l~~l~~L~~L~l~~n~l~~~ 166 (308)
T 1h6u_A 106 LQSIKTLDLTST-QITDVTP--LAGLSNLQVLYLDLNQI--------------T--NISPLAGLTNLQYLSIGNAQVSDL 166 (308)
T ss_dssp CTTCCEEECTTS-CCCCCGG--GTTCTTCCEEECCSSCC--------------C--CCGGGGGCTTCCEEECCSSCCCCC
T ss_pred CCCCCEEECCCC-CCCCchh--hcCCCCCCEEECCCCcc--------------C--cCccccCCCCccEEEccCCcCCCC
Confidence 999999999999 7888886 89999999999999971 1 122388899999999987764433
Q ss_pred cCCCccCccceeeecCCCCCCCcEEEecccCCceEEecccCCCCCCCCCccCCCCCcceEeeccCCCcceecCC---Ccc
Q 037229 448 QKPNSEHTRSLEVLPLAEMRQLDKLHIAFCTRLQEFEIECPGRNLMDLTWLIFAPNFRKIDINQSSHMEEIICI---DRL 524 (577)
Q Consensus 448 ~~l~~~~l~~L~~~~l~~l~~L~~L~l~~~~~l~~l~l~~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~~~~~~---~~L 524 (577)
.. +..+++|+.|+++++ .+..++.+..+++|+.|++++|...... .. ++|
T Consensus 167 ~~-------------l~~l~~L~~L~l~~n-------------~l~~~~~l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L 219 (308)
T 1h6u_A 167 TP-------------LANLSKLTTLKADDN-------------KISDISPLASLPNLIEVHLKNNQISDVS-PLANTSNL 219 (308)
T ss_dssp GG-------------GTTCTTCCEEECCSS-------------CCCCCGGGGGCTTCCEEECTTSCCCBCG-GGTTCTTC
T ss_pred hh-------------hcCCCCCCEEECCCC-------------ccCcChhhcCCCCCCEEEccCCccCccc-cccCCCCC
Confidence 22 456788999999876 5666666788999999999998744322 22 889
Q ss_pred cEEecCCcccccc
Q 037229 525 RKVSGGYKKILKR 537 (577)
Q Consensus 525 ~~L~l~~~~~l~~ 537 (577)
+.|++++++ +..
T Consensus 220 ~~L~l~~N~-i~~ 231 (308)
T 1h6u_A 220 FIVTLTNQT-ITN 231 (308)
T ss_dssp CEEEEEEEE-EEC
T ss_pred CEEEccCCe-eec
Confidence 999998865 444
No 62
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.74 E-value=5.1e-17 Score=157.69 Aligned_cols=195 Identities=16% Similarity=0.175 Sum_probs=141.6
Q ss_pred eeEEEEecCCCCCCcCCCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchh-hhcCcCCCEEeccCC
Q 037229 278 TRRVSLKENKIGDLWETPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSR-ISRLVSLQHLDLSSS 356 (577)
Q Consensus 278 ~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~L~~~ 356 (577)
.+.+.+.++.+..+|... .++++.|++++|.+..++...|..+++|++|+++++ .+..+|.. +..+++|++|++++|
T Consensus 18 ~~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCEEEccCCCCCccCCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCCC
Confidence 566777777777776543 267888888888888888766888888888888888 88888765 477888888888888
Q ss_pred CCCccccc-ccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCccCc
Q 037229 357 GILELPKE-LGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHLN 435 (577)
Q Consensus 357 ~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 435 (577)
.+..+|.. +..+++|++|++++| .+..+|...++++++|++|++++|. ........+..+++|+
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~--------------l~~~~~~~~~~l~~L~ 160 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYNE--------------LQSLPKGVFDKLTSLK 160 (270)
T ss_dssp CCCCCCTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC--------------CCCCCTTTTTTCTTCC
T ss_pred cCCcCCHhHcccccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCCCc--------------CCccCHhHccCCcccc
Confidence 88887765 577888888888888 6777776557788888888888886 1222233467778888
Q ss_pred eeEEEecCcccccCCCccCccceeeecCCCCCCCcEEEecccCCceEEecccCCCCCCCCC--ccCCCCCcceEeeccCC
Q 037229 436 VFSITLKSSYALQKPNSEHTRSLEVLPLAEMRQLDKLHIAFCTRLQEFEIECPGRNLMDLT--WLIFAPNFRKIDINQSS 513 (577)
Q Consensus 436 ~L~l~~~~~~~l~~l~~~~l~~L~~~~l~~l~~L~~L~l~~~~~l~~l~l~~~~~~l~~l~--~l~~l~~L~~L~l~~~~ 513 (577)
.|+++.+....+.. ..+..+++|+.|+++++ .++.++ .+..+++|+.|++++|+
T Consensus 161 ~L~L~~n~l~~~~~-----------~~~~~l~~L~~L~L~~N-------------~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 161 ELRLYNNQLKRVPE-----------GAFDKLTELKTLKLDNN-------------QLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp EEECCSSCCSCCCT-----------TTTTTCTTCCEEECCSS-------------CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred eeEecCCcCcEeCh-----------hHhccCCCcCEEECCCC-------------cCCcCCHHHhccccCCCEEEecCCC
Confidence 88887665433221 12456778888888776 344443 35677888888888776
No 63
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.73 E-value=4.6e-17 Score=179.53 Aligned_cols=259 Identities=17% Similarity=0.126 Sum_probs=185.1
Q ss_pred eEEEEecCCCCCCcCCCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCccc-chhhhcCcCCCEEeccCCC
Q 037229 279 RRVSLKENKIGDLWETPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKL-PSRISRLVSLQHLDLSSSG 357 (577)
Q Consensus 279 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~L~~~~ 357 (577)
+.+..++..+..+|... .+++++|++++|.+..+++..|.++++|++|+++++ .+..+ |..++++++|++|++++|.
T Consensus 7 ~~~~cs~~~L~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~ 84 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDL-PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN-TISKLEPELCQKLPMLKVLNLQHNE 84 (680)
T ss_dssp SEEECCSSCCSSCCSCS-CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSS-CCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred CeeECCCCCcccccccc-CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCC-ccCccCHHHHhcccCcCEEECCCCc
Confidence 34666777787787653 378999999999999999888999999999999999 88877 6679999999999999999
Q ss_pred CCcccc-cccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCccCce
Q 037229 358 ILELPK-ELGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHLNV 436 (577)
Q Consensus 358 i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~ 436 (577)
+..+|. .++++++|++|++++| .+..+|...++++++|++|++++|. .....+..++++++|+.
T Consensus 85 l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~--------------l~~~~~~~~~~l~~L~~ 149 (680)
T 1ziw_A 85 LSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNG--------------LSSTKLGTQVQLENLQE 149 (680)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSS-CCCCCCSCTTTTCTTCCEEECCSSC--------------CSCCCCCSSSCCTTCCE
T ss_pred cCccChhhhccCCCCCEEECCCC-ccCccChhHccccCCCCEEECCCCc--------------ccccCchhhcccccCCE
Confidence 999998 4999999999999999 7788875449999999999999997 23345566789999999
Q ss_pred eEEEecCcccccCC-----CccCcccee----------eecCCCCCCCcEEEeccc----------------CCceEEec
Q 037229 437 FSITLKSSYALQKP-----NSEHTRSLE----------VLPLAEMRQLDKLHIAFC----------------TRLQEFEI 485 (577)
Q Consensus 437 L~l~~~~~~~l~~l-----~~~~l~~L~----------~~~l~~l~~L~~L~l~~~----------------~~l~~l~l 485 (577)
|+++.+....+..- ....++.|. ...+..+++|+.|.+.++ ..++.+.+
T Consensus 150 L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L 229 (680)
T 1ziw_A 150 LLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSL 229 (680)
T ss_dssp EECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEEC
T ss_pred EEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEc
Confidence 99987754432210 001122222 001223455566655543 23445554
Q ss_pred ccCCCCCCCC--CccCCCC--CcceEeeccCCCcceecCC----CcccEEecCCcccccccccCCCCCCCcceEeeecC
Q 037229 486 ECPGRNLMDL--TWLIFAP--NFRKIDINQSSHMEEIICI----DRLRKVSGGYKKILKRIYPDVLPLKNLKGITVSSC 556 (577)
Q Consensus 486 ~~~~~~l~~l--~~l~~l~--~L~~L~l~~~~~~~~~~~~----~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c 556 (577)
... .+... .++..++ +|+.|++++|......+.. ++|+.|+++++.-....+.....+++|++|++.++
T Consensus 230 ~~n--~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~ 306 (680)
T 1ziw_A 230 SNS--QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306 (680)
T ss_dssp TTS--CCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTC
T ss_pred cCC--cccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccch
Confidence 433 33322 2455554 4888888888744333222 88888888886533334445667888888888764
No 64
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.73 E-value=4.5e-17 Score=174.90 Aligned_cols=127 Identities=20% Similarity=0.186 Sum_probs=107.4
Q ss_pred cCeeEEEEecCCCCCCcC--CCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcc--cchhhhcCcCCCEE
Q 037229 276 EGTRRVSLKENKIGDLWE--TPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEK--LPSRISRLVSLQHL 351 (577)
Q Consensus 276 ~~~r~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~--lp~~i~~l~~L~~L 351 (577)
..++++.+.++.+..++. ...+++|++|++++|.+..+++..|..+++|++|++++| .+.. .|..++++++|++|
T Consensus 50 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L 128 (549)
T 2z81_A 50 ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN-PYQTLGVTSLFPNLTNLQTL 128 (549)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTC-CCSSSCSSCSCTTCTTCCEE
T ss_pred CcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCC-cccccchhhhhhccCCccEE
Confidence 348999999999887764 488999999999999999999888999999999999999 8885 46789999999999
Q ss_pred eccCCC-CCcccc-cccCCCcCcEecccccccccc-cchHHhcCCCCCcEEEeeeec
Q 037229 352 DLSSSG-ILELPK-ELGFLGNLACLNLENTSSHGT-ITRQLRSNFSKPQVLRMFRFY 405 (577)
Q Consensus 352 ~L~~~~-i~~lp~-~i~~L~~L~~L~l~~~~~l~~-lp~~~i~~l~~L~~L~l~~~~ 405 (577)
++++|. +..+|. .++++++|++|++++| .+.. .|.. ++++++|++|++..+.
T Consensus 129 ~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~-l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 129 RIGNVETFSEIRRIDFAGLTSLNELEIKAL-SLRNYQSQS-LKSIRDIHHLTLHLSE 183 (549)
T ss_dssp EEEESSSCCEECTTTTTTCCEEEEEEEEET-TCCEECTTT-TTTCSEEEEEEEECSB
T ss_pred ECCCCccccccCHhhhhcccccCeeeccCC-cccccChhh-hhccccCceEecccCc
Confidence 999997 777774 6899999999999998 4554 5555 7888888888877765
No 65
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.73 E-value=5.3e-17 Score=159.07 Aligned_cols=195 Identities=18% Similarity=0.083 Sum_probs=153.4
Q ss_pred eeEEEEecCCCCCCcCCCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchhhhcCcCCCEEeccCCC
Q 037229 278 TRRVSLKENKIGDLWETPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSSSG 357 (577)
Q Consensus 278 ~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~ 357 (577)
++.+.+.++.+..+|... .++++.|++++|.+..+++..|..+++|++|+++++ .++.+|.. +.+++|++|++++|.
T Consensus 12 l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L~Ls~N~ 88 (290)
T 1p9a_G 12 HLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTLDLSHNQ 88 (290)
T ss_dssp CCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEEECCSSC
T ss_pred ccEEECCCCCCCcCCCCC-CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEEECCCCc
Confidence 677888888888877653 368999999999988887777889999999999999 88888754 788999999999999
Q ss_pred CCcccccccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCccCcee
Q 037229 358 ILELPKELGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHLNVF 437 (577)
Q Consensus 358 i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L 437 (577)
+..+|..+..+++|++|++++| .+..+|.+.+.++++|++|++.+|. ........+..+++|+.|
T Consensus 89 l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~--------------l~~~~~~~~~~l~~L~~L 153 (290)
T 1p9a_G 89 LQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNE--------------LKTLPPGLLTPTPKLEKL 153 (290)
T ss_dssp CSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSC--------------CCCCCTTTTTTCTTCCEE
T ss_pred CCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCC--------------CCccChhhcccccCCCEE
Confidence 9999988889999999999999 7888886558899999999999886 222233446788889999
Q ss_pred EEEecCcccccCCCccCccceeeecCCCCCCCcEEEecccCCceEEecccCCCCCCCCC-ccCCCCCcceEeeccCCC
Q 037229 438 SITLKSSYALQKPNSEHTRSLEVLPLAEMRQLDKLHIAFCTRLQEFEIECPGRNLMDLT-WLIFAPNFRKIDINQSSH 514 (577)
Q Consensus 438 ~l~~~~~~~l~~l~~~~l~~L~~~~l~~l~~L~~L~l~~~~~l~~l~l~~~~~~l~~l~-~l~~l~~L~~L~l~~~~~ 514 (577)
+++.+....++. . .+..+++|+.|+++++ .++.+| .+..+++|+.|+|++|+.
T Consensus 154 ~L~~N~l~~l~~---~--------~~~~l~~L~~L~L~~N-------------~l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 154 SLANNNLTELPA---G--------LLNGLENLDTLLLQEN-------------SLYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp ECTTSCCSCCCT---T--------TTTTCTTCCEEECCSS-------------CCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred ECCCCcCCccCH---H--------HhcCcCCCCEEECCCC-------------cCCccChhhcccccCCeEEeCCCCc
Confidence 988765443322 1 2456788888888876 555555 566778899999988764
No 66
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.72 E-value=9.1e-17 Score=175.55 Aligned_cols=125 Identities=23% Similarity=0.222 Sum_probs=103.7
Q ss_pred eeEEEEecCCCCCCcC--CCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccch-hhhcCcCCCEEecc
Q 037229 278 TRRVSLKENKIGDLWE--TPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPS-RISRLVSLQHLDLS 354 (577)
Q Consensus 278 ~r~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~L~ 354 (577)
++++.+++|.+..++. +..+++|++|++++|.+..++++.|.++++|++|+|++| .++.+|. .|+++++|++|+|+
T Consensus 54 ~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 54 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECGGGGTTCTTCCEEECT
T ss_pred CCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCCCCCHHHhcCCCCCCEEECC
Confidence 7888888888888764 478888999999988888888887888899999999998 8888865 57888899999999
Q ss_pred CCCCCccccc-ccCCCcCcEecccccccccc--cchHHhcCCCCCcEEEeeeec
Q 037229 355 SSGILELPKE-LGFLGNLACLNLENTSSHGT--ITRQLRSNFSKPQVLRMFRFY 405 (577)
Q Consensus 355 ~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~--lp~~~i~~l~~L~~L~l~~~~ 405 (577)
+|+++.+|.. ++++++|++|++++| .+.. +|.. ++++++|++|++++|.
T Consensus 133 ~N~l~~l~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~-~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 133 ETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY-FSNLTNLEHLDLSSNK 184 (635)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGG-GGGCTTCCEEECCSSC
T ss_pred CCcCCCCChhhhhcCcccCeeccccC-ccccCCCchh-hccchhhhhhcccCcc
Confidence 9888888764 888889999999888 5554 4554 7888899999988886
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.71 E-value=1.9e-18 Score=171.91 Aligned_cols=214 Identities=16% Similarity=0.122 Sum_probs=154.9
Q ss_pred CCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchhhhcCcCCCEEeccCCCCCcccccccCCCcCcEe
Q 037229 295 PTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSSSGILELPKELGFLGNLACL 374 (577)
Q Consensus 295 ~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L 374 (577)
..+++|++|++++|.+..+++..|..+++|++|++++| .+...++ ++.+++|++|++++|.++.+|. +++|++|
T Consensus 31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L 104 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETL 104 (317)
T ss_dssp TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTS-CCEEEEE-ETTCTTCCEEECCSSEEEEEEE----CTTCCEE
T ss_pred ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCC-cCCcchh-hhhcCCCCEEECcCCccccccC----CCCcCEE
Confidence 45679999999999998888777999999999999999 9987775 8999999999999999888774 4899999
Q ss_pred cccccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCccCceeEEEecCcccccCCCccC
Q 037229 375 NLENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHLNVFSITLKSSYALQKPNSEH 454 (577)
Q Consensus 375 ~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~l~~~~ 454 (577)
++++| .+..++.. .+++|++|++.+|. ........+..+++|+.|+++.+.......
T Consensus 105 ~l~~n-~l~~~~~~---~~~~L~~L~l~~N~--------------l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----- 161 (317)
T 3o53_A 105 HAANN-NISRVSCS---RGQGKKNIYLANNK--------------ITMLRDLDEGCRSRVQYLDLKLNEIDTVNF----- 161 (317)
T ss_dssp ECCSS-CCSEEEEC---CCSSCEEEECCSSC--------------CCSGGGBCTGGGSSEEEEECTTSCCCEEEG-----
T ss_pred ECCCC-ccCCcCcc---ccCCCCEEECCCCC--------------CCCccchhhhccCCCCEEECCCCCCCcccH-----
Confidence 99999 77887753 58899999999997 233344567788899999988766443221
Q ss_pred ccceeeecC-CCCCCCcEEEecccCCceEEecccCCCCCCCCCccCCCCCcceEeeccCCCcceecCC---CcccEEecC
Q 037229 455 TRSLEVLPL-AEMRQLDKLHIAFCTRLQEFEIECPGRNLMDLTWLIFAPNFRKIDINQSSHMEEIICI---DRLRKVSGG 530 (577)
Q Consensus 455 l~~L~~~~l-~~l~~L~~L~l~~~~~l~~l~l~~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~~~~~~---~~L~~L~l~ 530 (577)
..+ ..+++|+.|+++++ .++.++....+++|+.|++++|......... ++|+.|+++
T Consensus 162 ------~~~~~~l~~L~~L~L~~N-------------~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~ 222 (317)
T 3o53_A 162 ------AELAASSDTLEHLNLQYN-------------FIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLR 222 (317)
T ss_dssp ------GGGGGGTTTCCEEECTTS-------------CCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECT
T ss_pred ------HHHhhccCcCCEEECCCC-------------cCcccccccccccCCEEECCCCcCCcchhhhcccCcccEEECc
Confidence 011 24577777777766 3333333334677777777766533221111 677777777
Q ss_pred CcccccccccCCCCCCCcceEeeecCC
Q 037229 531 YKKILKRIYPDVLPLKNLKGITVSSCP 557 (577)
Q Consensus 531 ~~~~l~~l~~~~~~~~~L~~L~i~~c~ 557 (577)
++ .++.++.....+++|+.|++++++
T Consensus 223 ~N-~l~~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 223 NN-KLVLIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp TS-CCCEECTTCCCCTTCCEEECTTCC
T ss_pred CC-cccchhhHhhcCCCCCEEEccCCC
Confidence 65 366666655566777777776653
No 68
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.71 E-value=4.6e-17 Score=158.15 Aligned_cols=203 Identities=15% Similarity=0.144 Sum_probs=108.2
Q ss_pred CCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchhhhcCcCCCEEeccCCCCCccccc-ccCCCcCcE
Q 037229 295 PTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSSSGILELPKE-LGFLGNLAC 373 (577)
Q Consensus 295 ~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~ 373 (577)
..+++|+.|.+.++.+..++. +..+++|++|++++| .+..++ .++.+++|++|++++|.+..+|.. ++++++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~~--l~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGN-KLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCTT--GGGCTTCCEEECTTS-CCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred ccccceeeeeeCCCCcccccc--cccCCCCcEEECCCC-CCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 445556666666665555443 555666666666666 555544 555666666666666666655544 455666666
Q ss_pred ecccccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCccCceeEEEecCcccccCCCcc
Q 037229 374 LNLENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHLNVFSITLKSSYALQKPNSE 453 (577)
Q Consensus 374 L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~l~~~ 453 (577)
|++++| .+..+|...++++++|++|++.+|. ........++.+++|+.|+++.+....+..
T Consensus 114 L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~--------------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---- 174 (272)
T 3rfs_A 114 LVLVEN-QLQSLPDGVFDKLTNLTYLNLAHNQ--------------LQSLPKGVFDKLTNLTELDLSYNQLQSLPE---- 174 (272)
T ss_dssp EECTTS-CCCCCCTTTTTTCTTCCEEECCSSC--------------CCCCCTTTTTTCTTCCEEECCSSCCCCCCT----
T ss_pred EECCCC-cCCccCHHHhccCCCCCEEECCCCc--------------cCccCHHHhccCccCCEEECCCCCcCccCH----
Confidence 666666 4555554435566666666666654 111222234555666666665543322111
Q ss_pred CccceeeecCCCCCCCcEEEecccCCceEEecccCCCCCCCCC--ccCCCCCcceEeeccCCCcceecCCCcccEEecCC
Q 037229 454 HTRSLEVLPLAEMRQLDKLHIAFCTRLQEFEIECPGRNLMDLT--WLIFAPNFRKIDINQSSHMEEIICIDRLRKVSGGY 531 (577)
Q Consensus 454 ~l~~L~~~~l~~l~~L~~L~l~~~~~l~~l~l~~~~~~l~~l~--~l~~l~~L~~L~l~~~~~~~~~~~~~~L~~L~l~~ 531 (577)
..+..+++|+.|+++++ .+..++ .++.+++|+.|++++|+.... .|+|+.|.++.
T Consensus 175 -------~~~~~l~~L~~L~L~~N-------------~l~~~~~~~~~~l~~L~~L~l~~N~~~~~---~~~l~~l~~~~ 231 (272)
T 3rfs_A 175 -------GVFDKLTQLKDLRLYQN-------------QLKSVPDGVFDRLTSLQYIWLHDNPWDCT---CPGIRYLSEWI 231 (272)
T ss_dssp -------TTTTTCTTCCEEECCSS-------------CCSCCCTTTTTTCTTCCEEECCSSCBCCC---TTTTHHHHHHH
T ss_pred -------HHhcCCccCCEEECCCC-------------cCCccCHHHHhCCcCCCEEEccCCCcccc---CcHHHHHHHHH
Confidence 01345566666666655 333332 355667777777776653211 14555555555
Q ss_pred cccccccccCCC
Q 037229 532 KKILKRIYPDVL 543 (577)
Q Consensus 532 ~~~l~~l~~~~~ 543 (577)
+.-...+|...+
T Consensus 232 n~~~g~ip~~~~ 243 (272)
T 3rfs_A 232 NKHSGVVRNSAG 243 (272)
T ss_dssp HHTGGGBBCTTS
T ss_pred HhCCCcccCccc
Confidence 443334444433
No 69
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.71 E-value=2.7e-16 Score=152.61 Aligned_cols=192 Identities=17% Similarity=0.165 Sum_probs=153.7
Q ss_pred CCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccch-hhhcCcCCCEEeccCCCCCccccc-ccCCCcCcEec
Q 037229 298 PQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPS-RISRLVSLQHLDLSSSGILELPKE-LGFLGNLACLN 375 (577)
Q Consensus 298 ~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~ 375 (577)
...+++++.++.+..+|..+ ...|++|+++++ .+..+|. .++.+++|++|++++|.+..+|.. +.++++|++|+
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNI---PADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCC---CTTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE
T ss_pred CCCCEEEccCCCCCccCCCC---CCCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEE
Confidence 35789999999999998763 367999999999 9998875 789999999999999999999887 48899999999
Q ss_pred ccccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCccCceeEEEecCcccccCCCccCc
Q 037229 376 LENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHLNVFSITLKSSYALQKPNSEHT 455 (577)
Q Consensus 376 l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~l~~~~l 455 (577)
+++| .+..+|.+.+.++++|++|++.+|. ........++.+++|+.|+++.+....++.
T Consensus 92 l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~--------------l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~------ 150 (270)
T 2o6q_A 92 VTDN-KLQALPIGVFDQLVNLAELRLDRNQ--------------LKSLPPRVFDSLTKLTYLSLGYNELQSLPK------ 150 (270)
T ss_dssp CCSS-CCCCCCTTTTTTCSSCCEEECCSSC--------------CCCCCTTTTTTCTTCCEEECCSSCCCCCCT------
T ss_pred CCCC-cCCcCCHhHcccccCCCEEECCCCc--------------cCeeCHHHhCcCcCCCEEECCCCcCCccCH------
Confidence 9999 7888887667899999999999987 233344557889999999999776443322
Q ss_pred cceeeecCCCCCCCcEEEecccCCceEEecccCCCCCCCCC--ccCCCCCcceEeeccCCCcceecCC-----CcccEEe
Q 037229 456 RSLEVLPLAEMRQLDKLHIAFCTRLQEFEIECPGRNLMDLT--WLIFAPNFRKIDINQSSHMEEIICI-----DRLRKVS 528 (577)
Q Consensus 456 ~~L~~~~l~~l~~L~~L~l~~~~~l~~l~l~~~~~~l~~l~--~l~~l~~L~~L~l~~~~~~~~~~~~-----~~L~~L~ 528 (577)
..+..+++|+.|+++++ .+..++ .+..+++|+.|++++|... .++.. ++|+.|+
T Consensus 151 -----~~~~~l~~L~~L~L~~n-------------~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~ 211 (270)
T 2o6q_A 151 -----GVFDKLTSLKELRLYNN-------------QLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQ 211 (270)
T ss_dssp -----TTTTTCTTCCEEECCSS-------------CCSCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEE
T ss_pred -----hHccCCcccceeEecCC-------------cCcEeChhHhccCCCcCEEECCCCcCC-cCCHHHhccccCCCEEE
Confidence 12567889999999876 444444 4678899999999998644 33322 8899999
Q ss_pred cCCcc
Q 037229 529 GGYKK 533 (577)
Q Consensus 529 l~~~~ 533 (577)
+.+++
T Consensus 212 l~~N~ 216 (270)
T 2o6q_A 212 LQENP 216 (270)
T ss_dssp CCSSC
T ss_pred ecCCC
Confidence 98754
No 70
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.70 E-value=1e-16 Score=152.50 Aligned_cols=193 Identities=13% Similarity=0.134 Sum_probs=106.4
Q ss_pred cccEEEccCCCCCcccch-hhhcCcCCCEEeccCCC-CCcccc-cccCCCcCcEecccccccccccchHHhcCCCCCcEE
Q 037229 323 CLKVLNLSNSPCLEKLPS-RISRLVSLQHLDLSSSG-ILELPK-ELGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVL 399 (577)
Q Consensus 323 ~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~L~~~~-i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L 399 (577)
.|++|+++++ .++.+|. .++.+++|++|++++|. ++.+|. .+.++++|++|++++|..+..+|...+.++++|++|
T Consensus 32 ~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 5666666666 6666654 45666666666666664 666654 456666666666666225666654435666666666
Q ss_pred EeeeecCcccccccccCCccCcccccccccCCccCc---eeEEEec-CcccccCCCccCccceeeecCCCCCCCc-EEEe
Q 037229 400 RMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHLN---VFSITLK-SSYALQKPNSEHTRSLEVLPLAEMRQLD-KLHI 474 (577)
Q Consensus 400 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~---~L~l~~~-~~~~l~~l~~~~l~~L~~~~l~~l~~L~-~L~l 474 (577)
++.+|.. . ..+ .+..+++|+ .|+++.+ ....++. ..+..+++|+ .|++
T Consensus 111 ~l~~n~l--------------~-~lp-~~~~l~~L~~L~~L~l~~N~~l~~i~~-----------~~~~~l~~L~~~L~l 163 (239)
T 2xwt_C 111 GIFNTGL--------------K-MFP-DLTKVYSTDIFFILEITDNPYMTSIPV-----------NAFQGLCNETLTLKL 163 (239)
T ss_dssp EEEEECC--------------C-SCC-CCTTCCBCCSEEEEEEESCTTCCEECT-----------TTTTTTBSSEEEEEC
T ss_pred eCCCCCC--------------c-ccc-ccccccccccccEEECCCCcchhhcCc-----------ccccchhcceeEEEc
Confidence 6666651 1 111 144444444 6666654 3222221 1244556666 6666
Q ss_pred cccCCceEEecccCCCCCCCCC-ccCCCCCcceEeeccCCCcceecCC------CcccEEecCCcccccccccCCCCCCC
Q 037229 475 AFCTRLQEFEIECPGRNLMDLT-WLIFAPNFRKIDINQSSHMEEIICI------DRLRKVSGGYKKILKRIYPDVLPLKN 547 (577)
Q Consensus 475 ~~~~~l~~l~l~~~~~~l~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~------~~L~~L~l~~~~~l~~l~~~~~~~~~ 547 (577)
+++ .++.++ .....++|+.|++++|..+..++.. ++|+.|++++ ..++.++.. .|++
T Consensus 164 ~~n-------------~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~-N~l~~l~~~--~~~~ 227 (239)
T 2xwt_C 164 YNN-------------GFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-TSVTALPSK--GLEH 227 (239)
T ss_dssp CSC-------------CCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT-CCCCCCCCT--TCTT
T ss_pred CCC-------------CCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC-CccccCChh--Hhcc
Confidence 554 222222 1112266777777777544444221 4677777776 346666644 6888
Q ss_pred cceEeeecCCCC
Q 037229 548 LKGITVSSCPNL 559 (577)
Q Consensus 548 L~~L~i~~c~~L 559 (577)
|+.|.+.++.+|
T Consensus 228 L~~L~l~~~~~l 239 (239)
T 2xwt_C 228 LKELIARNTWTL 239 (239)
T ss_dssp CSEEECTTC---
T ss_pred CceeeccCccCC
Confidence 888888887654
No 71
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.70 E-value=2.7e-16 Score=154.06 Aligned_cols=193 Identities=19% Similarity=0.131 Sum_probs=155.5
Q ss_pred CCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCccc-chhhhcCcCCCEEeccCCCCCcccccccCCCcCcE
Q 037229 295 PTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKL-PSRISRLVSLQHLDLSSSGILELPKELGFLGNLAC 373 (577)
Q Consensus 295 ~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~ 373 (577)
.++++++++++.++.+..+|..+ .+.+++|+++++ .+..+ |..+..+++|++|++++|.++.+|.. +.+++|++
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~---~~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~ 81 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDL---PKDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGT 81 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCC---CTTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCE
T ss_pred cccCCccEEECCCCCCCcCCCCC---CCCCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCE
Confidence 56788999999999999999874 368999999999 89877 56799999999999999999998875 88999999
Q ss_pred ecccccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCccCceeEEEecCcccccCCCcc
Q 037229 374 LNLENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHLNVFSITLKSSYALQKPNSE 453 (577)
Q Consensus 374 L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~l~~~ 453 (577)
|++++| .+..+|.. +..+++|++|++++|. .....+..+..+++|+.|+++.+....++.
T Consensus 82 L~Ls~N-~l~~l~~~-~~~l~~L~~L~l~~N~--------------l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~---- 141 (290)
T 1p9a_G 82 LDLSHN-QLQSLPLL-GQTLPALTVLDVSFNR--------------LTSLPLGALRGLGELQELYLKGNELKTLPP---- 141 (290)
T ss_dssp EECCSS-CCSSCCCC-TTTCTTCCEEECCSSC--------------CCCCCSSTTTTCTTCCEEECTTSCCCCCCT----
T ss_pred EECCCC-cCCcCchh-hccCCCCCEEECCCCc--------------CcccCHHHHcCCCCCCEEECCCCCCCccCh----
Confidence 999999 88899986 8899999999999997 233334568889999999998776443322
Q ss_pred CccceeeecCCCCCCCcEEEecccCCceEEecccCCCCCCCCC--ccCCCCCcceEeeccCCCcceecCC----CcccEE
Q 037229 454 HTRSLEVLPLAEMRQLDKLHIAFCTRLQEFEIECPGRNLMDLT--WLIFAPNFRKIDINQSSHMEEIICI----DRLRKV 527 (577)
Q Consensus 454 ~l~~L~~~~l~~l~~L~~L~l~~~~~l~~l~l~~~~~~l~~l~--~l~~l~~L~~L~l~~~~~~~~~~~~----~~L~~L 527 (577)
..+..+++|+.|+++++ +++.++ .+..+++|+.|++++|... .++.. ++|+.|
T Consensus 142 -------~~~~~l~~L~~L~L~~N-------------~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l 200 (290)
T 1p9a_G 142 -------GLLTPTPKLEKLSLANN-------------NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFA 200 (290)
T ss_dssp -------TTTTTCTTCCEEECTTS-------------CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEE
T ss_pred -------hhcccccCCCEEECCCC-------------cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeE
Confidence 12466888999999876 555555 4577899999999988743 44333 778888
Q ss_pred ecCCcc
Q 037229 528 SGGYKK 533 (577)
Q Consensus 528 ~l~~~~ 533 (577)
.+.+.+
T Consensus 201 ~L~~Np 206 (290)
T 1p9a_G 201 FLHGNP 206 (290)
T ss_dssp ECCSCC
T ss_pred EeCCCC
Confidence 888644
No 72
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.70 E-value=1e-16 Score=155.78 Aligned_cols=196 Identities=17% Similarity=0.187 Sum_probs=162.1
Q ss_pred eeEEEEecCCCCCCcCCCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchh-hhcCcCCCEEeccCC
Q 037229 278 TRRVSLKENKIGDLWETPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSR-ISRLVSLQHLDLSSS 356 (577)
Q Consensus 278 ~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~L~~~ 356 (577)
++.+.+.++.+..++....+++|++|++.+|.+..++. +..+++|++|++++| .++.+|.. ++.+++|++|++++|
T Consensus 43 L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n 119 (272)
T 3rfs_A 43 IDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISA--LKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKELVLVEN 119 (272)
T ss_dssp CCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS
T ss_pred eeeeeeCCCCcccccccccCCCCcEEECCCCCCCCchh--hcCCCCCCEEECCCC-ccCccChhHhcCCcCCCEEECCCC
Confidence 89999999999988888999999999999999888763 889999999999999 99988654 789999999999999
Q ss_pred CCCccccc-ccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCccCc
Q 037229 357 GILELPKE-LGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHLN 435 (577)
Q Consensus 357 ~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 435 (577)
.+..+|.. ++.+++|++|++++| .+..+|...++++++|++|++++|. ........++.+++|+
T Consensus 120 ~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~--------------l~~~~~~~~~~l~~L~ 184 (272)
T 3rfs_A 120 QLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQ--------------LQSLPEGVFDKLTQLK 184 (272)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC--------------CCCCCTTTTTTCTTCC
T ss_pred cCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCC--------------cCccCHHHhcCCccCC
Confidence 99988876 789999999999999 7888887757899999999999997 2333344578899999
Q ss_pred eeEEEecCcccccCCCccCccceeeecCCCCCCCcEEEecccCCceEEecccCCCCCCCCCccCCCCCcceEeeccCCCc
Q 037229 436 VFSITLKSSYALQKPNSEHTRSLEVLPLAEMRQLDKLHIAFCTRLQEFEIECPGRNLMDLTWLIFAPNFRKIDINQSSHM 515 (577)
Q Consensus 436 ~L~l~~~~~~~l~~l~~~~l~~L~~~~l~~l~~L~~L~l~~~~~l~~l~l~~~~~~l~~l~~l~~l~~L~~L~l~~~~~~ 515 (577)
.|+++.+....+.. . .+..+++|+.|++.+++ +.+.+|+|+.|+++.+...
T Consensus 185 ~L~L~~N~l~~~~~---~--------~~~~l~~L~~L~l~~N~------------------~~~~~~~l~~l~~~~n~~~ 235 (272)
T 3rfs_A 185 DLRLYQNQLKSVPD---G--------VFDRLTSLQYIWLHDNP------------------WDCTCPGIRYLSEWINKHS 235 (272)
T ss_dssp EEECCSSCCSCCCT---T--------TTTTCTTCCEEECCSSC------------------BCCCTTTTHHHHHHHHHTG
T ss_pred EEECCCCcCCccCH---H--------HHhCCcCCCEEEccCCC------------------ccccCcHHHHHHHHHHhCC
Confidence 99999776443222 1 25678999999998863 3345788888888877765
Q ss_pred ceecC
Q 037229 516 EEIIC 520 (577)
Q Consensus 516 ~~~~~ 520 (577)
..++.
T Consensus 236 g~ip~ 240 (272)
T 3rfs_A 236 GVVRN 240 (272)
T ss_dssp GGBBC
T ss_pred CcccC
Confidence 55544
No 73
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.70 E-value=1.3e-15 Score=158.81 Aligned_cols=260 Identities=18% Similarity=0.193 Sum_probs=145.8
Q ss_pred eeEEEEecCCCCCCcCCCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchhhhcCcCCCEEeccCCC
Q 037229 278 TRRVSLKENKIGDLWETPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSSSG 357 (577)
Q Consensus 278 ~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~ 357 (577)
++.+.+.++.+..+|.. .++|++|++++|.+..++.. .++|++|++++| .++.+| .++++++|++|++++|.
T Consensus 93 L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n-~l~~lp-~~~~l~~L~~L~l~~N~ 164 (454)
T 1jl5_A 93 LESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNN-QLEKLP-ELQNSSFLKIIDVDNNS 164 (454)
T ss_dssp CSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSC----CTTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSSC
T ss_pred CCEEEccCCcCCccccc--cCCCcEEECCCCccCcccCC----CCCCCEEECcCC-CCCCCc-ccCCCCCCCEEECCCCc
Confidence 66666666666665532 35666666666665554431 256666666666 666666 46666666666666666
Q ss_pred CCcccccccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeecCcccc-cccccCCccC---cccccccccCCcc
Q 037229 358 ILELPKELGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQY-MKADSLPFGG---SEFLVEQLCCLKH 433 (577)
Q Consensus 358 i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~---~~~~~~~l~~L~~ 433 (577)
++.+|..+ .+|++|++++| .+..+|. ++++++|++|++.+|...+++ ....+..+.. ....+.+++.+++
T Consensus 165 l~~lp~~~---~~L~~L~L~~n-~l~~l~~--~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~~lp~~~~l~~ 238 (454)
T 1jl5_A 165 LKKLPDLP---PSLEFIAAGNN-QLEELPE--LQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPF 238 (454)
T ss_dssp CSCCCCCC---TTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCCCTTCTT
T ss_pred CcccCCCc---ccccEEECcCC-cCCcCcc--ccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCCcccccCCCCC
Confidence 66666543 36666666666 5556663 666666666666666533221 0001111100 0012234778888
Q ss_pred CceeEEEecCcccccCCCccCccceeee-----cC-CCCCCCcEEEecccC---------CceEEecccCCCCCCCCCcc
Q 037229 434 LNVFSITLKSSYALQKPNSEHTRSLEVL-----PL-AEMRQLDKLHIAFCT---------RLQEFEIECPGRNLMDLTWL 498 (577)
Q Consensus 434 L~~L~l~~~~~~~l~~l~~~~l~~L~~~-----~l-~~l~~L~~L~l~~~~---------~l~~l~l~~~~~~l~~l~~l 498 (577)
|+.|+++.+....++.... .++.|... .+ ..+++|+.|+++++. .++.+.++.+ .+.. +
T Consensus 239 L~~L~l~~N~l~~l~~~~~-~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N--~l~~---i 312 (454)
T 1jl5_A 239 LTTIYADNNLLKTLPDLPP-SLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSN--EIRS---L 312 (454)
T ss_dssp CCEEECCSSCCSSCCSCCT-TCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSS--CCSE---E
T ss_pred CCEEECCCCcCCccccccc-ccCEEECCCCcccccCcccCcCCEEECcCCccCcccCcCCcCCEEECcCC--cCCc---c
Confidence 8888888776555443321 13333200 01 113567777777653 2222222222 2222 2
Q ss_pred CCC-CCcceEeeccCCCcceecCC-CcccEEecCCcccccccccCCCCCCCcceEeeecCCCCCcCC
Q 037229 499 IFA-PNFRKIDINQSSHMEEIICI-DRLRKVSGGYKKILKRIYPDVLPLKNLKGITVSSCPNLKRLP 563 (577)
Q Consensus 499 ~~l-~~L~~L~l~~~~~~~~~~~~-~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~~L~~lp 563 (577)
..+ ++|+.|++++|... .++.. ++|+.|+++++ .++.+|. .+++|++|+++++ ++..+|
T Consensus 313 ~~~~~~L~~L~Ls~N~l~-~lp~~~~~L~~L~L~~N-~l~~lp~---~l~~L~~L~L~~N-~l~~l~ 373 (454)
T 1jl5_A 313 CDLPPSLEELNVSNNKLI-ELPALPPRLERLIASFN-HLAEVPE---LPQNLKQLHVEYN-PLREFP 373 (454)
T ss_dssp CCCCTTCCEEECCSSCCS-CCCCCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCSSCC
T ss_pred cCCcCcCCEEECCCCccc-cccccCCcCCEEECCCC-ccccccc---hhhhccEEECCCC-CCCcCC
Confidence 233 47888888877643 34433 78888888876 4667765 5788888888887 444433
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.69 E-value=2e-16 Score=153.99 Aligned_cols=132 Identities=22% Similarity=0.188 Sum_probs=79.6
Q ss_pred CCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccch-hhhcCcCCCEEeccCCCCCccc-ccccCCCcCcEec
Q 037229 298 PQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPS-RISRLVSLQHLDLSSSGILELP-KELGFLGNLACLN 375 (577)
Q Consensus 298 ~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~L~~~~i~~lp-~~i~~L~~L~~L~ 375 (577)
++|++|++++|.+..++...|..+++|++|++++| .+..++. .++.+++|++|++++|.+..++ ..+.++++|++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 45666666666666666545666666666666666 6665543 4666666666666666666555 3466666666666
Q ss_pred ccccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCccCceeEEEecCc
Q 037229 376 LENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHLNVFSITLKSS 444 (577)
Q Consensus 376 l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 444 (577)
+++| .+..++...++++++|++|++.+|.. .....+..++.+++|+.|+++.+..
T Consensus 107 l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l-------------~~~~l~~~~~~l~~L~~L~Ls~N~l 161 (276)
T 2z62_A 107 AVET-NLASLENFPIGHLKTLKELNVAHNLI-------------QSFKLPEYFSNLTNLEHLDLSSNKI 161 (276)
T ss_dssp CTTS-CCCCSTTCCCTTCTTCCEEECCSSCC-------------CCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred CCCC-CccccCchhcccCCCCCEEECcCCcc-------------ceecCchhhccCCCCCEEECCCCCC
Confidence 6666 55555542256666666666666651 0112345566666666666665543
No 75
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.69 E-value=1e-15 Score=159.61 Aligned_cols=244 Identities=18% Similarity=0.199 Sum_probs=139.2
Q ss_pred eeEEEEecCCCCCCcCCCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchhhhcCcCCCEEeccCCC
Q 037229 278 TRRVSLKENKIGDLWETPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSSSG 357 (577)
Q Consensus 278 ~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~ 357 (577)
++.+.+.++.+..+|....+++|++|++++|.+..+|.. ..+|++|++++| .+..+| .++.+++|++|++++|.
T Consensus 133 L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~n-~l~~l~-~~~~l~~L~~L~l~~N~ 206 (454)
T 1jl5_A 133 LEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNN-QLEELP-ELQNLPFLTAIYADNNS 206 (454)
T ss_dssp CCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSSC
T ss_pred CCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCC----cccccEEECcCC-cCCcCc-cccCCCCCCEEECCCCc
Confidence 667777777777666666777777777777776666543 346777777777 777776 57777778888887777
Q ss_pred CCcccccccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCccCcee
Q 037229 358 ILELPKELGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHLNVF 437 (577)
Q Consensus 358 i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L 437 (577)
+..+|... .+|++|++++| .+..+|. ++++++|++|++.+|...+++ . .+++|+.|
T Consensus 207 l~~l~~~~---~~L~~L~l~~n-~l~~lp~--~~~l~~L~~L~l~~N~l~~l~---------------~---~~~~L~~L 262 (454)
T 1jl5_A 207 LKKLPDLP---LSLESIVAGNN-ILEELPE--LQNLPFLTTIYADNNLLKTLP---------------D---LPPSLEAL 262 (454)
T ss_dssp CSSCCCCC---TTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCSSCCSSCC---------------S---CCTTCCEE
T ss_pred CCcCCCCc---CcccEEECcCC-cCCcccc--cCCCCCCCEEECCCCcCCccc---------------c---cccccCEE
Confidence 77766543 47788888887 6677875 788888888888887622211 0 12445555
Q ss_pred EEEecCcccccCCCccCccceeee-----cCC-CCCCCcEEEecccC---------CceEEecccCCCCCCCCCccCCCC
Q 037229 438 SITLKSSYALQKPNSEHTRSLEVL-----PLA-EMRQLDKLHIAFCT---------RLQEFEIECPGRNLMDLTWLIFAP 502 (577)
Q Consensus 438 ~l~~~~~~~l~~l~~~~l~~L~~~-----~l~-~l~~L~~L~l~~~~---------~l~~l~l~~~~~~l~~l~~l~~l~ 502 (577)
+++.+....++.... .++.|... .+. -.++|+.|+++++. .++.+.++.+ .+..+|. .++
T Consensus 263 ~l~~N~l~~l~~~~~-~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N--~l~~lp~--~~~ 337 (454)
T 1jl5_A 263 NVRDNYLTDLPELPQ-SLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN--KLIELPA--LPP 337 (454)
T ss_dssp ECCSSCCSCCCCCCT-TCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSS--CCSCCCC--CCT
T ss_pred ECCCCcccccCcccC-cCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCC--ccccccc--cCC
Confidence 555444333322211 12222100 000 01355555555432 3444444444 5555553 268
Q ss_pred CcceEeeccCCCcceecCC-CcccEEecCCccccc--ccccCCCCC-------------CCcceEeeecCC
Q 037229 503 NFRKIDINQSSHMEEIICI-DRLRKVSGGYKKILK--RIYPDVLPL-------------KNLKGITVSSCP 557 (577)
Q Consensus 503 ~L~~L~l~~~~~~~~~~~~-~~L~~L~l~~~~~l~--~l~~~~~~~-------------~~L~~L~i~~c~ 557 (577)
+|+.|++++|... .++.. ++|+.|+++++.-.. .+|.....+ ++|++|++++++
T Consensus 338 ~L~~L~L~~N~l~-~lp~~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 338 RLERLIASFNHLA-EVPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP 407 (454)
T ss_dssp TCCEEECCSSCCS-CCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---------------------
T ss_pred cCCEEECCCCccc-cccchhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc
Confidence 9999999988643 44334 889999999865332 344444333 788899888764
No 76
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.69 E-value=2.7e-16 Score=149.67 Aligned_cols=205 Identities=16% Similarity=0.145 Sum_probs=159.7
Q ss_pred CCCCCcCCCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCC-Ccccch-hhhcCcCCCEEeccC-CCCCcccc
Q 037229 287 KIGDLWETPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPC-LEKLPS-RISRLVSLQHLDLSS-SGILELPK 363 (577)
Q Consensus 287 ~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~-l~~lp~-~i~~l~~L~~L~L~~-~~i~~lp~ 363 (577)
.+..+|. -.++|++|++.+|.+..++...|..+++|++|+++++ . ++.+|+ .++.+++|++|++++ |.++.+|.
T Consensus 22 ~l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n-~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 22 DIQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSID-VTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp SCSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECC-SSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred CccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCC-CCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 3666776 3458999999999999999877999999999999999 6 888875 688999999999998 89999885
Q ss_pred -cccCCCcCcEecccccccccccchHHhcCCCCCc---EEEeeee-cCcccccccccCCccCcccccccccCCccCc-ee
Q 037229 364 -ELGFLGNLACLNLENTSSHGTITRQLRSNFSKPQ---VLRMFRF-YGKAQYMKADSLPFGGSEFLVEQLCCLKHLN-VF 437 (577)
Q Consensus 364 -~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~---~L~l~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~-~L 437 (577)
.+..+++|++|++++| .+..+|. ++.+++|+ +|++.+| . ........+..+++|+ .|
T Consensus 99 ~~f~~l~~L~~L~l~~n-~l~~lp~--~~~l~~L~~L~~L~l~~N~~--------------l~~i~~~~~~~l~~L~~~L 161 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNT-GLKMFPD--LTKVYSTDIFFILEITDNPY--------------MTSIPVNAFQGLCNETLTL 161 (239)
T ss_dssp TSEECCTTCCEEEEEEE-CCCSCCC--CTTCCBCCSEEEEEEESCTT--------------CCEECTTTTTTTBSSEEEE
T ss_pred HHhCCCCCCCEEeCCCC-CCccccc--cccccccccccEEECCCCcc--------------hhhcCcccccchhcceeEE
Confidence 5889999999999999 7888997 88888888 9999998 5 2223334578899999 99
Q ss_pred EEEecCcccccCCCccCccceeeecCCCCCCCcEEEecccCCceEEecccCCCCCCCCCccCCC-CCcceEeeccCCCcc
Q 037229 438 SITLKSSYALQKPNSEHTRSLEVLPLAEMRQLDKLHIAFCTRLQEFEIECPGRNLMDLTWLIFA-PNFRKIDINQSSHME 516 (577)
Q Consensus 438 ~l~~~~~~~l~~l~~~~l~~L~~~~l~~l~~L~~L~l~~~~~l~~l~l~~~~~~l~~l~~l~~l-~~L~~L~l~~~~~~~ 516 (577)
+++.+....++.. .+.. ++|+.|+++++..+..++.. .+..+ ++|+.|++++|.. .
T Consensus 162 ~l~~n~l~~i~~~-----------~~~~-~~L~~L~L~~n~~l~~i~~~----------~~~~l~~~L~~L~l~~N~l-~ 218 (239)
T 2xwt_C 162 KLYNNGFTSVQGY-----------AFNG-TKLDAVYLNKNKYLTVIDKD----------AFGGVYSGPSLLDVSQTSV-T 218 (239)
T ss_dssp ECCSCCCCEECTT-----------TTTT-CEEEEEECTTCTTCCEECTT----------TTTTCSBCCSEEECTTCCC-C
T ss_pred EcCCCCCcccCHh-----------hcCC-CCCCEEEcCCCCCcccCCHH----------HhhccccCCcEEECCCCcc-c
Confidence 9987765443321 1223 68999999887544433211 45677 9999999999874 4
Q ss_pred eecCC--CcccEEecCCccc
Q 037229 517 EIICI--DRLRKVSGGYKKI 534 (577)
Q Consensus 517 ~~~~~--~~L~~L~l~~~~~ 534 (577)
.++.. ++|+.|.+.++..
T Consensus 219 ~l~~~~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 219 ALPSKGLEHLKELIARNTWT 238 (239)
T ss_dssp CCCCTTCTTCSEEECTTC--
T ss_pred cCChhHhccCceeeccCccC
Confidence 44433 8999999988754
No 77
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.68 E-value=2.4e-17 Score=173.74 Aligned_cols=227 Identities=13% Similarity=0.067 Sum_probs=178.9
Q ss_pred CeeEEEEecCCCCCCcC--CCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchhhhcCcCCCEEecc
Q 037229 277 GTRRVSLKENKIGDLWE--TPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLS 354 (577)
Q Consensus 277 ~~r~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~ 354 (577)
.++.+.++++.+..++. ...+++|++|++++|.+...++ +..+++|++|+|++| .++.+|. .++|++|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~~----~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN-YVQELLV----GPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSS-EEEEEEE----CTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCC-cCCCCCC----CCCcCEEECc
Confidence 38999999999988764 4889999999999999877776 889999999999999 9988873 3899999999
Q ss_pred CCCCCcccccccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCccccccccc-CCcc
Q 037229 355 SSGILELPKELGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLC-CLKH 433 (577)
Q Consensus 355 ~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~L~~ 433 (577)
+|.+..+|.. .+++|++|++++| .+..++...++++++|++|++++|. .....+..+. .+++
T Consensus 108 ~N~l~~~~~~--~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~--------------l~~~~~~~l~~~l~~ 170 (487)
T 3oja_A 108 NNNISRVSCS--RGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNE--------------IDTVNFAELAASSDT 170 (487)
T ss_dssp SSCCCCEEEC--CCSSCEEEECCSS-CCCSGGGBCGGGGSSEEEEECTTSC--------------CCEEEGGGGGGGTTT
T ss_pred CCcCCCCCcc--ccCCCCEEECCCC-CCCCCCchhhcCCCCCCEEECCCCC--------------CCCcChHHHhhhCCc
Confidence 9999988764 5789999999999 6777755338899999999999997 3334555665 7899
Q ss_pred CceeEEEecCcccccCCCccCccceeeecCCCCCCCcEEEecccCCceEEecccCCCCCCCCC-ccCCCCCcceEeeccC
Q 037229 434 LNVFSITLKSSYALQKPNSEHTRSLEVLPLAEMRQLDKLHIAFCTRLQEFEIECPGRNLMDLT-WLIFAPNFRKIDINQS 512 (577)
Q Consensus 434 L~~L~l~~~~~~~l~~l~~~~l~~L~~~~l~~l~~L~~L~l~~~~~l~~l~l~~~~~~l~~l~-~l~~l~~L~~L~l~~~ 512 (577)
|+.|+++.+....++. ...+++|+.|+++++ .++.++ .++.+++|+.|++++|
T Consensus 171 L~~L~Ls~N~l~~~~~-------------~~~l~~L~~L~Ls~N-------------~l~~~~~~~~~l~~L~~L~Ls~N 224 (487)
T 3oja_A 171 LEHLNLQYNFIYDVKG-------------QVVFAKLKTLDLSSN-------------KLAFMGPEFQSAAGVTWISLRNN 224 (487)
T ss_dssp CCEEECTTSCCCEEEC-------------CCCCTTCCEEECCSS-------------CCCEECGGGGGGTTCSEEECTTS
T ss_pred ccEEecCCCccccccc-------------cccCCCCCEEECCCC-------------CCCCCCHhHcCCCCccEEEecCC
Confidence 9999999877554422 345889999999887 444433 5678899999999998
Q ss_pred CCcceecCC----CcccEEecCCcccc-cccccCCCCCCCcceEeee
Q 037229 513 SHMEEIICI----DRLRKVSGGYKKIL-KRIYPDVLPLKNLKGITVS 554 (577)
Q Consensus 513 ~~~~~~~~~----~~L~~L~l~~~~~l-~~l~~~~~~~~~L~~L~i~ 554 (577)
... .++.. ++|+.|++++++-. ..++.....++.|+.+.+.
T Consensus 225 ~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 225 KLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred cCc-ccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 754 44433 89999999987644 2444445567777777775
No 78
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.68 E-value=1.7e-16 Score=155.70 Aligned_cols=174 Identities=18% Similarity=0.201 Sum_probs=112.0
Q ss_pred CcCCCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchhhhcCcCCCEEeccCCCCCcccccccCCCc
Q 037229 291 LWETPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSSSGILELPKELGFLGN 370 (577)
Q Consensus 291 l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~ 370 (577)
......+++|+.|.+.+|.+..++. +..+++|++|++++| .++.+++ ++.+++|++|++++|.+..+|. ++.+++
T Consensus 39 ~~~~~~l~~L~~L~l~~~~i~~~~~--~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~ 113 (291)
T 1h6t_A 39 AVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKK 113 (291)
T ss_dssp EECHHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTT
T ss_pred ccchhhcCcccEEEccCCCcccChh--HhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCC
Confidence 3333456667777777777666654 666777777777777 7776665 6777777777777777766553 677777
Q ss_pred CcEecccccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCccCceeEEEecCcccccCC
Q 037229 371 LACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHLNVFSITLKSSYALQKP 450 (577)
Q Consensus 371 L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~l 450 (577)
|++|++++| .+..++. +..+++|++|++++|. .. .+..+..+++|+.|+++.+....+..
T Consensus 114 L~~L~L~~n-~i~~~~~--l~~l~~L~~L~l~~n~--------------l~--~~~~l~~l~~L~~L~L~~N~l~~~~~- 173 (291)
T 1h6t_A 114 LKSLSLEHN-GISDING--LVHLPQLESLYLGNNK--------------IT--DITVLSRLTKLDTLSLEDNQISDIVP- 173 (291)
T ss_dssp CCEEECTTS-CCCCCGG--GGGCTTCCEEECCSSC--------------CC--CCGGGGGCTTCSEEECCSSCCCCCGG-
T ss_pred CCEEECCCC-cCCCChh--hcCCCCCCEEEccCCc--------------CC--cchhhccCCCCCEEEccCCccccchh-
Confidence 777777777 5666654 6677777777777665 11 12456667777777776554333221
Q ss_pred CccCccceeeecCCCCCCCcEEEecccCCceEEecccCCCCCCCCCccCCCCCcceEeeccCCC
Q 037229 451 NSEHTRSLEVLPLAEMRQLDKLHIAFCTRLQEFEIECPGRNLMDLTWLIFAPNFRKIDINQSSH 514 (577)
Q Consensus 451 ~~~~l~~L~~~~l~~l~~L~~L~l~~~~~l~~l~l~~~~~~l~~l~~l~~l~~L~~L~l~~~~~ 514 (577)
+..+++|+.|+++++ .++.++.+..+++|+.|++++|..
T Consensus 174 ------------l~~l~~L~~L~L~~N-------------~i~~l~~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 174 ------------LAGLTKLQNLYLSKN-------------HISDLRALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp ------------GTTCTTCCEEECCSS-------------CCCBCGGGTTCTTCSEEEEEEEEE
T ss_pred ------------hcCCCccCEEECCCC-------------cCCCChhhccCCCCCEEECcCCcc
Confidence 345667777777665 445555666777777777777653
No 79
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.68 E-value=3.5e-16 Score=152.31 Aligned_cols=194 Identities=20% Similarity=0.202 Sum_probs=124.1
Q ss_pred eeEEEEecCCCCCCcC--CCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccc-hhhhcCcCCCEEecc
Q 037229 278 TRRVSLKENKIGDLWE--TPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLP-SRISRLVSLQHLDLS 354 (577)
Q Consensus 278 ~r~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~L~ 354 (577)
++.+.+.++.+..++. ...+++|++|++++|.+..++...|..+++|++|++++| .+..++ ..+..+++|++|+++
T Consensus 30 l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECT
T ss_pred ccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC-ccCccChhhhcCCccccEEECC
Confidence 6777777777766653 366777778888777777777666777777888888777 777664 457777778888887
Q ss_pred CCCCCcccc-cccCCCcCcEecccccccccc--cchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCC
Q 037229 355 SSGILELPK-ELGFLGNLACLNLENTSSHGT--ITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCL 431 (577)
Q Consensus 355 ~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~--lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 431 (577)
+|.+..++. .++++++|++|++++| .+.. +|.. ++++++|++|++++|. ........+..+
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~l~~~-~~~l~~L~~L~Ls~N~--------------l~~~~~~~~~~l 172 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEY-FSNLTNLEHLDLSSNK--------------IQSIYCTDLRVL 172 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGG-GGGCTTCCEEECCSSC--------------CCEECGGGGHHH
T ss_pred CCCccccCchhcccCCCCCEEECcCC-ccceecCchh-hccCCCCCEEECCCCC--------------CCcCCHHHhhhh
Confidence 777776665 4777777888887777 5554 4555 7777778888777775 122222333344
Q ss_pred ccCc----eeEEEecCcccccCCCccCccceeeecCCCCCCCcEEEecccCCceEEecccCCCCCCCCC--ccCCCCCcc
Q 037229 432 KHLN----VFSITLKSSYALQKPNSEHTRSLEVLPLAEMRQLDKLHIAFCTRLQEFEIECPGRNLMDLT--WLIFAPNFR 505 (577)
Q Consensus 432 ~~L~----~L~l~~~~~~~l~~l~~~~l~~L~~~~l~~l~~L~~L~l~~~~~l~~l~l~~~~~~l~~l~--~l~~l~~L~ 505 (577)
++|+ .|+++.+....+.. ......+|+.|+++++ .++.++ .++.+++|+
T Consensus 173 ~~L~~l~l~L~ls~n~l~~~~~------------~~~~~~~L~~L~L~~n-------------~l~~~~~~~~~~l~~L~ 227 (276)
T 2z62_A 173 HQMPLLNLSLDLSLNPMNFIQP------------GAFKEIRLKELALDTN-------------QLKSVPDGIFDRLTSLQ 227 (276)
T ss_dssp HTCTTCCEEEECCSSCCCEECT------------TSSCSCCEEEEECCSS-------------CCSCCCTTTTTTCCSCC
T ss_pred hhccccceeeecCCCcccccCc------------cccCCCcccEEECCCC-------------ceeecCHhHhccccccc
Confidence 4444 55655554332221 0112235777777665 344433 346677777
Q ss_pred eEeeccCC
Q 037229 506 KIDINQSS 513 (577)
Q Consensus 506 ~L~l~~~~ 513 (577)
.|++++|+
T Consensus 228 ~L~l~~N~ 235 (276)
T 2z62_A 228 KIWLHTNP 235 (276)
T ss_dssp EEECCSSC
T ss_pred EEEccCCc
Confidence 77777665
No 80
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.67 E-value=1.4e-15 Score=166.08 Aligned_cols=121 Identities=21% Similarity=0.171 Sum_probs=78.9
Q ss_pred EEecCCCCCCcCCCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccch-hhhcCcCCCEEeccCCCCCc
Q 037229 282 SLKENKIGDLWETPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPS-RISRLVSLQHLDLSSSGILE 360 (577)
Q Consensus 282 ~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~L~~~~i~~ 360 (577)
..++..+..+|... .+++++|++++|.++.+++..|..+++|++|+|++| .++.+|+ .|+++++|++|+|++|+++.
T Consensus 37 ~c~~~~l~~vP~~l-p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~l~~ 114 (635)
T 4g8a_A 37 QCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQS 114 (635)
T ss_dssp ECTTSCCSSCCSSS-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred ECCCCCcCccCCCC-CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCcCCC
Confidence 33344455555432 135677777777777776666777777777777777 7776644 46667777777777777777
Q ss_pred cccc-ccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeec
Q 037229 361 LPKE-LGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFY 405 (577)
Q Consensus 361 lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 405 (577)
+|.. |.+|++|++|++++| .+..+|...++++++|++|++++|.
T Consensus 115 l~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N~ 159 (635)
T 4g8a_A 115 LALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNL 159 (635)
T ss_dssp ECGGGGTTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSC
T ss_pred CCHHHhcCCCCCCEEECCCC-cCCCCChhhhhcCcccCeeccccCc
Confidence 6654 567777777777777 5666665446677777777776665
No 81
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.67 E-value=1.9e-17 Score=164.37 Aligned_cols=199 Identities=16% Similarity=0.101 Sum_probs=109.7
Q ss_pred CCCcccEEEccCCCCCc-ccchhh--hcCcCCCEEeccCCCCCcccccccCC-----CcCcEecccccccccccchHHhc
Q 037229 320 FKPCLKVLNLSNSPCLE-KLPSRI--SRLVSLQHLDLSSSGILELPKELGFL-----GNLACLNLENTSSHGTITRQLRS 391 (577)
Q Consensus 320 ~l~~L~~L~L~~~~~l~-~lp~~i--~~l~~L~~L~L~~~~i~~lp~~i~~L-----~~L~~L~l~~~~~l~~lp~~~i~ 391 (577)
.+++|++|++++| .+. .+|..+ +.+++|++|++++|.+..+|..++.+ ++|++|++++| .+..++...++
T Consensus 93 ~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~ 170 (312)
T 1wwl_A 93 GISGLQELTLENL-EVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQVR 170 (312)
T ss_dssp TTSCCCEEEEEEE-BCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTCC
T ss_pred CcCCccEEEccCC-cccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHHhc
Confidence 4566666666666 555 345544 56666666666666666555555554 56666666666 45555532356
Q ss_pred CCCCCcEEEeeeecCcccccccccCCccCcccccccc--cCCccCceeEEEecCcccccCCCccCccceeeecCCCCCCC
Q 037229 392 NFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQL--CCLKHLNVFSITLKSSYALQKPNSEHTRSLEVLPLAEMRQL 469 (577)
Q Consensus 392 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~L~~L~~L~l~~~~~~~l~~l~~~~l~~L~~~~l~~l~~L 469 (577)
++++|++|++++|... .....+..+ +.+++|+.|+++.+....+..+... .+..+++|
T Consensus 171 ~l~~L~~L~Ls~N~l~------------~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--------~~~~l~~L 230 (312)
T 1wwl_A 171 VFPALSTLDLSDNPEL------------GERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA--------LAAARVQL 230 (312)
T ss_dssp CCSSCCEEECCSCTTC------------HHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHH--------HHHTTCCC
T ss_pred cCCCCCEEECCCCCcC------------cchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHH--------HHhcCCCC
Confidence 6666666666665410 001112222 5556666666655443322111100 01235667
Q ss_pred cEEEecccCCceEEecccCCCCCCC---CCccCCCCCcceEeeccCCCcceecCC--CcccEEecCCcccccccccCCCC
Q 037229 470 DKLHIAFCTRLQEFEIECPGRNLMD---LTWLIFAPNFRKIDINQSSHMEEIICI--DRLRKVSGGYKKILKRIYPDVLP 544 (577)
Q Consensus 470 ~~L~l~~~~~l~~l~l~~~~~~l~~---l~~l~~l~~L~~L~l~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~~~~ 544 (577)
+.|+++++ .+.. .+.+..+++|++|++++|... .++.. ++|++|+++++ .++.+|. ...
T Consensus 231 ~~L~Ls~N-------------~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~~~L~~L~Ls~N-~l~~~p~-~~~ 294 (312)
T 1wwl_A 231 QGLDLSHN-------------SLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPAKLSVLDLSYN-RLDRNPS-PDE 294 (312)
T ss_dssp SEEECTTS-------------CCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCCSEEEEEECCSS-CCCSCCC-TTT
T ss_pred CEEECCCC-------------cCCcccchhhhhhcCCCCEEECCCCccC-hhhhhccCCceEEECCCC-CCCCChh-Hhh
Confidence 77777665 2222 123445677777777777643 44333 67888888774 4666654 566
Q ss_pred CCCcceEeeecC
Q 037229 545 LKNLKGITVSSC 556 (577)
Q Consensus 545 ~~~L~~L~i~~c 556 (577)
+++|++|++++.
T Consensus 295 l~~L~~L~L~~N 306 (312)
T 1wwl_A 295 LPQVGNLSLKGN 306 (312)
T ss_dssp SCEEEEEECTTC
T ss_pred CCCCCEEeccCC
Confidence 788888887765
No 82
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.67 E-value=2.1e-15 Score=162.43 Aligned_cols=224 Identities=17% Similarity=0.116 Sum_probs=162.9
Q ss_pred CCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchhhhcCcCCCEEeccCCCCCcccccccCCCcCcEeccc
Q 037229 298 PQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSSSGILELPKELGFLGNLACLNLE 377 (577)
Q Consensus 298 ~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~ 377 (577)
.++++|++.++.+..+|..++ ++|++|++++| .++.+|. .+++|++|+|++|.++.+|. .+++|++|+++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~---~~L~~L~L~~N-~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP---AHITTLVIPDN-NLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIF 109 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC---TTCSEEEECSC-CCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEEC
T ss_pred CCCcEEEecCCCcCccChhhC---CCCcEEEecCC-CCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECc
Confidence 458999999999999998743 79999999999 9999996 68999999999999999997 78999999999
Q ss_pred ccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCccCceeEEEecCcccccCCCccCccc
Q 037229 378 NTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHLNVFSITLKSSYALQKPNSEHTRS 457 (577)
Q Consensus 378 ~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~l~~~~l~~ 457 (577)
+| .+..+|. .+++|++|++.+|... ..+. .+++|+.|+++.+....++..+.. ++.
T Consensus 110 ~N-~l~~l~~----~l~~L~~L~L~~N~l~---------------~lp~---~l~~L~~L~Ls~N~l~~l~~~~~~-L~~ 165 (622)
T 3g06_A 110 SN-PLTHLPA----LPSGLCKLWIFGNQLT---------------SLPV---LPPGLQELSVSDNQLASLPALPSE-LCK 165 (622)
T ss_dssp SC-CCCCCCC----CCTTCCEEECCSSCCS---------------CCCC---CCTTCCEEECCSSCCSCCCCCCTT-CCE
T ss_pred CC-cCCCCCC----CCCCcCEEECCCCCCC---------------cCCC---CCCCCCEEECcCCcCCCcCCccCC-CCE
Confidence 99 7888886 6789999999998721 1222 247788888887766655443222 333
Q ss_pred eeee-----cC-CCCCCCcEEEecccC---------CceEEecccCCCCCCCCCccCCCCCcceEeeccCCCcceecCC-
Q 037229 458 LEVL-----PL-AEMRQLDKLHIAFCT---------RLQEFEIECPGRNLMDLTWLIFAPNFRKIDINQSSHMEEIICI- 521 (577)
Q Consensus 458 L~~~-----~l-~~l~~L~~L~l~~~~---------~l~~l~l~~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~~~~~~- 521 (577)
|... .+ ..+++|+.|+++++. .++.+.+..+ .++.++. .+++|+.|++++|.. ..++..
T Consensus 166 L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N--~l~~l~~--~~~~L~~L~Ls~N~L-~~lp~~l 240 (622)
T 3g06_A 166 LWAYNNQLTSLPMLPSGLQELSVSDNQLASLPTLPSELYKLWAYNN--RLTSLPA--LPSGLKELIVSGNRL-TSLPVLP 240 (622)
T ss_dssp EECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS--CCSSCCC--CCTTCCEEECCSSCC-SCCCCCC
T ss_pred EECCCCCCCCCcccCCCCcEEECCCCCCCCCCCccchhhEEECcCC--cccccCC--CCCCCCEEEccCCcc-CcCCCCC
Confidence 3200 01 234778888887753 2233333333 4444442 357888899888753 444433
Q ss_pred CcccEEecCCcccccccccCCCCCCCcceEeeecCCCCCcCCCC
Q 037229 522 DRLRKVSGGYKKILKRIYPDVLPLKNLKGITVSSCPNLKRLPLN 565 (577)
Q Consensus 522 ~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~c~~L~~lp~~ 565 (577)
++|+.|+++++ .++.++. .+++|++|++++| +|..+|..
T Consensus 241 ~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N-~L~~lp~~ 279 (622)
T 3g06_A 241 SELKELMVSGN-RLTSLPM---LPSGLLSLSVYRN-QLTRLPES 279 (622)
T ss_dssp TTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCCSCCGG
T ss_pred CcCcEEECCCC-CCCcCCc---ccccCcEEeCCCC-CCCcCCHH
Confidence 88999999886 5777776 6788999999887 67777654
No 83
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.64 E-value=5.3e-16 Score=166.77 Aligned_cols=179 Identities=19% Similarity=0.218 Sum_probs=121.6
Q ss_pred CCCCcCCCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchhhhcCcCCCEEeccCCCCCcccccccC
Q 037229 288 IGDLWETPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSSSGILELPKELGF 367 (577)
Q Consensus 288 ~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~ 367 (577)
+..+.....+++|+.|.+.+|.+..++. +..+++|+.|+|++| .+..+|+ ++.+++|++|+|++|.+..+| .+..
T Consensus 33 i~~~~~~~~L~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~ 107 (605)
T 1m9s_A 33 VTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKD 107 (605)
T ss_dssp TTSEECHHHHTTCCCCBCTTCCCCCCTT--GGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTT
T ss_pred cccccchhcCCCCCEEECcCCCCCCChH--HccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCCCCCCCh-hhcc
Confidence 3334444566777777777777766664 677777777777777 7777765 777777777777777777765 5777
Q ss_pred CCcCcEecccccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCccCceeEEEecCcccc
Q 037229 368 LGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHLNVFSITLKSSYAL 447 (577)
Q Consensus 368 L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l 447 (577)
+++|++|+|++| .+..+|. +..+++|+.|++++|. .. .+..+..+++|+.|+++.+.+..+
T Consensus 108 l~~L~~L~Ls~N-~l~~l~~--l~~l~~L~~L~Ls~N~--------------l~--~l~~l~~l~~L~~L~Ls~N~l~~~ 168 (605)
T 1m9s_A 108 LKKLKSLSLEHN-GISDING--LVHLPQLESLYLGNNK--------------IT--DITVLSRLTKLDTLSLEDNQISDI 168 (605)
T ss_dssp CTTCCEEECTTS-CCCCCGG--GGGCTTCSEEECCSSC--------------CC--CCGGGGSCTTCSEEECCSSCCCCC
T ss_pred CCCCCEEEecCC-CCCCCcc--ccCCCccCEEECCCCc--------------cC--CchhhcccCCCCEEECcCCcCCCc
Confidence 777777777777 6666654 7777777777777775 11 125567777777777776553332
Q ss_pred cCCCccCccceeeecCCCCCCCcEEEecccCCceEEecccCCCCCCCCCccCCCCCcceEeeccCCCcc
Q 037229 448 QKPNSEHTRSLEVLPLAEMRQLDKLHIAFCTRLQEFEIECPGRNLMDLTWLIFAPNFRKIDINQSSHME 516 (577)
Q Consensus 448 ~~l~~~~l~~L~~~~l~~l~~L~~L~l~~~~~l~~l~l~~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~ 516 (577)
.. +..+++|+.|++++| .+..++.+..+++|+.|+|++|....
T Consensus 169 ~~-------------l~~l~~L~~L~Ls~N-------------~i~~l~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 169 VP-------------LAGLTKLQNLYLSKN-------------HISDLRALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp GG-------------GTTCTTCCEEECCSS-------------CCCBCGGGTTCTTCSEEECCSEEEEC
T ss_pred hh-------------hccCCCCCEEECcCC-------------CCCCChHHccCCCCCEEEccCCcCcC
Confidence 21 345677777777765 44555666777778888877776443
No 84
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.62 E-value=3.6e-15 Score=150.37 Aligned_cols=234 Identities=16% Similarity=0.132 Sum_probs=146.7
Q ss_pred EEEEecCCCCCCcCCCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCC-cccch-hhhcCcCCCE-EeccCC
Q 037229 280 RVSLKENKIGDLWETPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCL-EKLPS-RISRLVSLQH-LDLSSS 356 (577)
Q Consensus 280 ~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l-~~lp~-~i~~l~~L~~-L~L~~~ 356 (577)
.+..+++.+..+|... .++++.|++++|.++.+|.+.|.++++|++|+|++| .+ +.+|. .|.++++|+. +.+.++
T Consensus 13 ~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQN-DVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp EEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECC-TTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred EEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCC-CCCCccChhHhhcchhhhhhhcccCC
Confidence 4555666666666532 356777777777777777766777777777777777 55 34443 4566666654 444556
Q ss_pred CCCcccc-cccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCC-ccC
Q 037229 357 GILELPK-ELGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCL-KHL 434 (577)
Q Consensus 357 ~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L-~~L 434 (577)
++..+|. .+..+++|++|++++| .+..+|...+....++..|++.++.. ........+..+ ..+
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~-------------i~~l~~~~f~~~~~~l 156 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNIN-------------IHTIERNSFVGLSFES 156 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTT-------------CCEECTTSSTTSBSSC
T ss_pred cccccCchhhhhcccccccccccc-ccccCCchhhcccchhhhhhhccccc-------------cccccccchhhcchhh
Confidence 7776643 4677777777777777 56666653244455566666655430 111112223333 246
Q ss_pred ceeEEEecCcccccCCCccCccceeeecCCCCCCCcEEEecccCCceEEecccCCCCCCCCC--ccCCCCCcceEeeccC
Q 037229 435 NVFSITLKSSYALQKPNSEHTRSLEVLPLAEMRQLDKLHIAFCTRLQEFEIECPGRNLMDLT--WLIFAPNFRKIDINQS 512 (577)
Q Consensus 435 ~~L~l~~~~~~~l~~l~~~~l~~L~~~~l~~l~~L~~L~l~~~~~l~~l~l~~~~~~l~~l~--~l~~l~~L~~L~l~~~ 512 (577)
+.|+++.+.+..++.- .....+|+.|.+.++. .+..+| .++.+++|+.|+|++|
T Consensus 157 ~~L~L~~N~i~~i~~~------------~f~~~~L~~l~l~~~n------------~l~~i~~~~f~~l~~L~~LdLs~N 212 (350)
T 4ay9_X 157 VILWLNKNGIQEIHNS------------AFNGTQLDELNLSDNN------------NLEELPNDVFHGASGPVILDISRT 212 (350)
T ss_dssp EEEECCSSCCCEECTT------------SSTTEEEEEEECTTCT------------TCCCCCTTTTTTEECCSEEECTTS
T ss_pred hhhccccccccCCChh------------hccccchhHHhhccCC------------cccCCCHHHhccCcccchhhcCCC
Confidence 6677766554433221 1223456777776654 444444 4578899999999988
Q ss_pred CCcceecCC--CcccEEecCCcccccccccCCCCCCCcceEeeec
Q 037229 513 SHMEEIICI--DRLRKVSGGYKKILKRIYPDVLPLKNLKGITVSS 555 (577)
Q Consensus 513 ~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~i~~ 555 (577)
. ++.++.. .+|+.|.+.++.+++.+|. ...|++|+.+++.+
T Consensus 213 ~-l~~lp~~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 213 R-IHSLPSYGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp C-CCCCCSSSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred C-cCccChhhhccchHhhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence 6 5555443 8888999888888998884 56788999888853
No 85
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.62 E-value=1.2e-15 Score=151.24 Aligned_cols=197 Identities=16% Similarity=0.154 Sum_probs=120.2
Q ss_pred CCCCccEEeCccCCCC-Ccchhhc-CCCCcccEEEccCCCCCcccchhhhcC-----cCCCEEeccCCCCCccc-ccccC
Q 037229 296 TSPQLLTLFLNINPLS-MIGGDLF-QFKPCLKVLNLSNSPCLEKLPSRISRL-----VSLQHLDLSSSGILELP-KELGF 367 (577)
Q Consensus 296 ~~~~Lr~L~l~~~~~~-~~~~~~~-~~l~~L~~L~L~~~~~l~~lp~~i~~l-----~~L~~L~L~~~~i~~lp-~~i~~ 367 (577)
.+++|++|++++|.+. .+|..++ ..+++|++|++++| .+..+|..++.+ ++|++|++++|.+..+| ..+++
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 4677777777777765 4555432 67777777777777 777667666666 77777777777777766 56777
Q ss_pred CCcCcEecccccccccc--cchHHh--cCCCCCcEEEeeeecCcccccccccCCccCccccc-ccccCCccCceeEEEec
Q 037229 368 LGNLACLNLENTSSHGT--ITRQLR--SNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLV-EQLCCLKHLNVFSITLK 442 (577)
Q Consensus 368 L~~L~~L~l~~~~~l~~--lp~~~i--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~L~~L~~L~l~~~ 442 (577)
+++|++|++++|..... +|.. + +++++|++|++.+|... ...... .-+..+++|+.|+++.+
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~-~~~~~l~~L~~L~L~~N~l~------------~~~~~~~~~~~~l~~L~~L~Ls~N 238 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISA-LCPLKFPTLQVLALRNAGME------------TPSGVCSALAAARVQLQGLDLSHN 238 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHH-SCTTSCTTCCEEECTTSCCC------------CHHHHHHHHHHTTCCCSEEECTTS
T ss_pred CCCCCEEECCCCCcCcchHHHHH-HHhccCCCCCEEECCCCcCc------------chHHHHHHHHhcCCCCCEEECCCC
Confidence 77777777777732222 2333 4 67777777777777511 001111 22345677777777766
Q ss_pred CcccccCCCccCccceeeecCCCCCCCcEEEecccCCceEEecccCCCCCCCCC-ccCCCCCcceEeeccCCCcceecCC
Q 037229 443 SSYALQKPNSEHTRSLEVLPLAEMRQLDKLHIAFCTRLQEFEIECPGRNLMDLT-WLIFAPNFRKIDINQSSHMEEIICI 521 (577)
Q Consensus 443 ~~~~l~~l~~~~l~~L~~~~l~~l~~L~~L~l~~~~~l~~l~l~~~~~~l~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~ 521 (577)
........ ..+..+++|+.|+++++ .++.+| ++. ++|++|++++|..... +..
T Consensus 239 ~l~~~~~~----------~~~~~l~~L~~L~Ls~N-------------~l~~ip~~~~--~~L~~L~Ls~N~l~~~-p~~ 292 (312)
T 1wwl_A 239 SLRDAAGA----------PSCDWPSQLNSLNLSFT-------------GLKQVPKGLP--AKLSVLDLSYNRLDRN-PSP 292 (312)
T ss_dssp CCCSSCCC----------SCCCCCTTCCEEECTTS-------------CCSSCCSSCC--SEEEEEECCSSCCCSC-CCT
T ss_pred cCCcccch----------hhhhhcCCCCEEECCCC-------------ccChhhhhcc--CCceEEECCCCCCCCC-hhH
Confidence 54332210 01234567777777765 444444 332 6777777777754322 212
Q ss_pred ---CcccEEecCCc
Q 037229 522 ---DRLRKVSGGYK 532 (577)
Q Consensus 522 ---~~L~~L~l~~~ 532 (577)
++|+.|++++.
T Consensus 293 ~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 293 DELPQVGNLSLKGN 306 (312)
T ss_dssp TTSCEEEEEECTTC
T ss_pred hhCCCCCEEeccCC
Confidence 77777777764
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.62 E-value=5.7e-15 Score=141.51 Aligned_cols=172 Identities=16% Similarity=0.169 Sum_probs=136.2
Q ss_pred eeEEEEecCCCCCCcCCCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccch-hhhcCcCCCEEeccCC
Q 037229 278 TRRVSLKENKIGDLWETPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPS-RISRLVSLQHLDLSSS 356 (577)
Q Consensus 278 ~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~L~~~ 356 (577)
.+++.+.++.+..+|.... ++++.|++.+|.+..+++..|..+++|++|+++++ .+..+++ .+..+++|++|+|++|
T Consensus 16 ~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CeEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECCCC
Confidence 5677888888888876533 68999999999988888877899999999999999 8887754 5788999999999999
Q ss_pred CCCccccc-ccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCccCc
Q 037229 357 GILELPKE-LGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHLN 435 (577)
Q Consensus 357 ~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 435 (577)
.+..+|.. +..+++|++|++++| .+..+|.+.+.++++|++|++.+|. ........++.+++|+
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~--------------l~~~~~~~~~~l~~L~ 158 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQ--------------LQSIPAGAFDKLTNLQ 158 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC--------------CCCCCTTTTTTCTTCC
T ss_pred cccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCCc--------------CCccCHHHcCcCcCCC
Confidence 99988765 688999999999999 7888887757889999999999987 2223334578888999
Q ss_pred eeEEEecCcccccCCCccCccceeeecCCCCCCCcEEEeccc
Q 037229 436 VFSITLKSSYALQKPNSEHTRSLEVLPLAEMRQLDKLHIAFC 477 (577)
Q Consensus 436 ~L~l~~~~~~~l~~l~~~~l~~L~~~~l~~l~~L~~L~l~~~ 477 (577)
.|+++.+....+.. ..+..+++|+.|++.++
T Consensus 159 ~L~L~~N~l~~~~~-----------~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 159 TLSLSTNQLQSVPH-----------GAFDRLGKLQTITLFGN 189 (251)
T ss_dssp EEECCSSCCSCCCT-----------TTTTTCTTCCEEECCSC
T ss_pred EEECCCCcCCccCH-----------HHHhCCCCCCEEEeeCC
Confidence 99988776443221 12455677788877765
No 87
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.62 E-value=8.8e-15 Score=147.49 Aligned_cols=221 Identities=14% Similarity=0.117 Sum_probs=162.9
Q ss_pred ccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccch-hhhcCcCCCEEeccCCCCC-cccc-cccCCCcCcEecc
Q 037229 300 LLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPS-RISRLVSLQHLDLSSSGIL-ELPK-ELGFLGNLACLNL 376 (577)
Q Consensus 300 Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~L~~~~i~-~lp~-~i~~L~~L~~L~l 376 (577)
-+++..+++.++.+|.++ .+++++|+|+++ .++.+|+ .|.++++|++|+|++|.+. .+|. .|.++++|+.+..
T Consensus 11 ~~~v~C~~~~Lt~iP~~l---~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~ 86 (350)
T 4ay9_X 11 NRVFLCQESKVTEIPSDL---PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 86 (350)
T ss_dssp TTEEEEESTTCCSCCTTC---CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred CCEEEecCCCCCccCcCc---CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence 367888888899999874 467999999999 9999986 5899999999999999874 5665 4788999887655
Q ss_pred cccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCccCceeEEEecCcccccCCCccCcc
Q 037229 377 ENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHLNVFSITLKSSYALQKPNSEHTR 456 (577)
Q Consensus 377 ~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~l~~~~l~ 456 (577)
.++..+..+|.+.+..+++|++|++.+|.. .......+....++..+++.. ...+..++..
T Consensus 87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l--------------~~~~~~~~~~~~~l~~l~l~~--~~~i~~l~~~--- 147 (350)
T 4ay9_X 87 EKANNLLYINPEAFQNLPNLQYLLISNTGI--------------KHLPDVHKIHSLQKVLLDIQD--NINIHTIERN--- 147 (350)
T ss_dssp EEETTCCEECTTSBCCCTTCCEEEEEEECC--------------SSCCCCTTCCBSSCEEEEEES--CTTCCEECTT---
T ss_pred ccCCcccccCchhhhhcccccccccccccc--------------ccCCchhhcccchhhhhhhcc--cccccccccc---
Confidence 554488999876689999999999999971 111222333444566666653 2222222211
Q ss_pred ceeeecCCCC-CCCcEEEecccCCceEEecccCCCCCCCCC-ccCCCCCcceEeeccCCCcceecCC-----CcccEEec
Q 037229 457 SLEVLPLAEM-RQLDKLHIAFCTRLQEFEIECPGRNLMDLT-WLIFAPNFRKIDINQSSHMEEIICI-----DRLRKVSG 529 (577)
Q Consensus 457 ~L~~~~l~~l-~~L~~L~l~~~~~l~~l~l~~~~~~l~~l~-~l~~l~~L~~L~l~~~~~~~~~~~~-----~~L~~L~l 529 (577)
.+..+ ..++.|+++++ .++.++ .....++|+.|.+.+++.++.++.. ++|+.|++
T Consensus 148 -----~f~~~~~~l~~L~L~~N-------------~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdL 209 (350)
T 4ay9_X 148 -----SFVGLSFESVILWLNKN-------------GIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI 209 (350)
T ss_dssp -----SSTTSBSSCEEEECCSS-------------CCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEEC
T ss_pred -----chhhcchhhhhhccccc-------------cccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhc
Confidence 12222 45777888765 444443 3345678999999998888887653 99999999
Q ss_pred CCcccccccccCCCCCCCcceEeeecCCCCCcCCC
Q 037229 530 GYKKILKRIYPDVLPLKNLKGITVSSCPNLKRLPL 564 (577)
Q Consensus 530 ~~~~~l~~l~~~~~~~~~L~~L~i~~c~~L~~lp~ 564 (577)
+++ .++.+|. ..|.+|+.|.+.+|.+|+++|-
T Consensus 210 s~N-~l~~lp~--~~~~~L~~L~~l~~~~l~~lP~ 241 (350)
T 4ay9_X 210 SRT-RIHSLPS--YGLENLKKLRARSTYNLKKLPT 241 (350)
T ss_dssp TTS-CCCCCCS--SSCTTCCEEECTTCTTCCCCCC
T ss_pred CCC-CcCccCh--hhhccchHhhhccCCCcCcCCC
Confidence 996 5888875 4589999999999999999995
No 88
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.60 E-value=8.4e-15 Score=143.51 Aligned_cols=164 Identities=25% Similarity=0.252 Sum_probs=142.7
Q ss_pred eeEEEEecCCCCCCcCCCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchhhhcCcCCCEEeccCCC
Q 037229 278 TRRVSLKENKIGDLWETPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSSSG 357 (577)
Q Consensus 278 ~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~ 357 (577)
++.+.+.++.+..++....+++|++|++++|.+..+++ +..+++|++|++++| .++.+| .++.+++|++|++++|.
T Consensus 48 L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~L~~n~ 123 (291)
T 1h6t_A 48 IDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN-KVKDLS-SLKDLKKLKSLSLEHNG 123 (291)
T ss_dssp CCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCGG-GGTTCTTCCEEECTTSC
T ss_pred ccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCC-cCCCCh-hhccCCCCCEEECCCCc
Confidence 89999999999999888899999999999999988887 899999999999999 999887 59999999999999999
Q ss_pred CCcccccccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCccCcee
Q 037229 358 ILELPKELGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHLNVF 437 (577)
Q Consensus 358 i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L 437 (577)
+..++ .+..+++|++|++++| .+..++. ++++++|++|++++|. .. ... .+..+++|+.|
T Consensus 124 i~~~~-~l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~L~~N~--------------l~-~~~-~l~~l~~L~~L 183 (291)
T 1h6t_A 124 ISDIN-GLVHLPQLESLYLGNN-KITDITV--LSRLTKLDTLSLEDNQ--------------IS-DIV-PLAGLTKLQNL 183 (291)
T ss_dssp CCCCG-GGGGCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECCSSC--------------CC-CCG-GGTTCTTCCEE
T ss_pred CCCCh-hhcCCCCCCEEEccCC-cCCcchh--hccCCCCCEEEccCCc--------------cc-cch-hhcCCCccCEE
Confidence 99884 6899999999999999 7888864 9999999999999997 11 122 28899999999
Q ss_pred EEEecCcccccCCCccCccceeeecCCCCCCCcEEEecccC
Q 037229 438 SITLKSSYALQKPNSEHTRSLEVLPLAEMRQLDKLHIAFCT 478 (577)
Q Consensus 438 ~l~~~~~~~l~~l~~~~l~~L~~~~l~~l~~L~~L~l~~~~ 478 (577)
+++.+....++. +..+++|+.|+++++.
T Consensus 184 ~L~~N~i~~l~~-------------l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 184 YLSKNHISDLRA-------------LAGLKNLDVLELFSQE 211 (291)
T ss_dssp ECCSSCCCBCGG-------------GTTCTTCSEEEEEEEE
T ss_pred ECCCCcCCCChh-------------hccCCCCCEEECcCCc
Confidence 999876554432 5678899999999863
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.60 E-value=1.3e-14 Score=138.95 Aligned_cols=175 Identities=13% Similarity=0.108 Sum_probs=141.8
Q ss_pred CCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccch-hhhcCcCCCEEeccCCCCCccccc-ccCCCcCcEec
Q 037229 298 PQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPS-RISRLVSLQHLDLSSSGILELPKE-LGFLGNLACLN 375 (577)
Q Consensus 298 ~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~ 375 (577)
...+++++.++.+..+|..+ ...|++|+++++ .+..++. .++.+++|++|+|++|.+..++.. +..+++|++|+
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~---~~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGI---PADTEKLDLQST-GLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCC---CTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCeEEecCCCCccccCCCC---CCCCCEEEccCC-CcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEE
Confidence 45788999999999999873 268999999999 8988754 689999999999999999987765 79999999999
Q ss_pred ccccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCccCceeEEEecCcccccCCCccCc
Q 037229 376 LENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHLNVFSITLKSSYALQKPNSEHT 455 (577)
Q Consensus 376 l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~l~~~~l 455 (577)
+++| .+..+|...+..+++|++|++++|. ........+..+++|+.|+++.+....+..
T Consensus 90 L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~--------------l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------ 148 (251)
T 3m19_A 90 LANN-QLASLPLGVFDHLTQLDKLYLGGNQ--------------LKSLPSGVFDRLTKLKELRLNTNQLQSIPA------ 148 (251)
T ss_dssp CTTS-CCCCCCTTTTTTCTTCCEEECCSSC--------------CCCCCTTTTTTCTTCCEEECCSSCCCCCCT------
T ss_pred CCCC-cccccChhHhcccCCCCEEEcCCCc--------------CCCcChhHhccCCcccEEECcCCcCCccCH------
Confidence 9999 7888887668999999999999997 222233446889999999999776543322
Q ss_pred cceeeecCCCCCCCcEEEecccCCceEEecccCCCCCCCCC--ccCCCCCcceEeeccCCCc
Q 037229 456 RSLEVLPLAEMRQLDKLHIAFCTRLQEFEIECPGRNLMDLT--WLIFAPNFRKIDINQSSHM 515 (577)
Q Consensus 456 ~~L~~~~l~~l~~L~~L~l~~~~~l~~l~l~~~~~~l~~l~--~l~~l~~L~~L~l~~~~~~ 515 (577)
..+..+++|+.|+++++ .+..++ .+..+++|+.|++++|+..
T Consensus 149 -----~~~~~l~~L~~L~L~~N-------------~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 149 -----GAFDKLTNLQTLSLSTN-------------QLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp -----TTTTTCTTCCEEECCSS-------------CCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred -----HHcCcCcCCCEEECCCC-------------cCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 12567889999999886 455544 5678999999999998743
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.57 E-value=9.8e-15 Score=144.58 Aligned_cols=194 Identities=19% Similarity=0.137 Sum_probs=129.1
Q ss_pred eeEEEEecCCCCCCcC-C---CCCCCccEEeCccCCCCCc----chhhcCCCCcccEEEccCCCCCcccc-hhhhcCcCC
Q 037229 278 TRRVSLKENKIGDLWE-T---PTSPQLLTLFLNINPLSMI----GGDLFQFKPCLKVLNLSNSPCLEKLP-SRISRLVSL 348 (577)
Q Consensus 278 ~r~l~l~~~~~~~l~~-~---~~~~~Lr~L~l~~~~~~~~----~~~~~~~l~~L~~L~L~~~~~l~~lp-~~i~~l~~L 348 (577)
++.+.+.++.+..... . ..+++|++|++++|.+... +...+..+++|++|++++| .+..+| ..++.+++|
T Consensus 93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA-HSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC-SSCCCCTTSCCCCTTC
T ss_pred eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCC-CcchhhHHHhccCCCC
Confidence 7788888887654332 2 5678888888888876542 2222456888888888888 777664 567788888
Q ss_pred CEEeccCCCCCc---cccc--ccCCCcCcEecccccccccccchH---HhcCCCCCcEEEeeeecCcccccccccCCccC
Q 037229 349 QHLDLSSSGILE---LPKE--LGFLGNLACLNLENTSSHGTITRQ---LRSNFSKPQVLRMFRFYGKAQYMKADSLPFGG 420 (577)
Q Consensus 349 ~~L~L~~~~i~~---lp~~--i~~L~~L~~L~l~~~~~l~~lp~~---~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 420 (577)
++|+|++|++.. ++.. ++.+++|++|++++| .++.+|.. .++.+++|++|++++|. .
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~--------------l 236 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNS--------------L 236 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSC--------------C
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCC--------------C
Confidence 888888887653 3332 367888888888888 66665542 24677888888888886 2
Q ss_pred cccccccccCC---ccCceeEEEecCcccccCCCccCccceeeecCCCCCCCcEEEecccCCceEEecccCCCCCCCCCc
Q 037229 421 SEFLVEQLCCL---KHLNVFSITLKSSYALQKPNSEHTRSLEVLPLAEMRQLDKLHIAFCTRLQEFEIECPGRNLMDLTW 497 (577)
Q Consensus 421 ~~~~~~~l~~L---~~L~~L~l~~~~~~~l~~l~~~~l~~L~~~~l~~l~~L~~L~l~~~~~l~~l~l~~~~~~l~~l~~ 497 (577)
....+..+..+ ++|+.|+++.+....++. . + .++|+.|+++++ .++.+|.
T Consensus 237 ~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~---~---------~--~~~L~~L~Ls~N-------------~l~~~~~ 289 (310)
T 4glp_A 237 RATVNPSAPRCMWSSALNSLNLSFAGLEQVPK---G---------L--PAKLRVLDLSSN-------------RLNRAPQ 289 (310)
T ss_dssp CCCCCSCCSSCCCCTTCCCEECCSSCCCSCCS---C---------C--CSCCSCEECCSC-------------CCCSCCC
T ss_pred CccchhhHHhccCcCcCCEEECCCCCCCchhh---h---------h--cCCCCEEECCCC-------------cCCCCch
Confidence 22223344444 678888887665443221 1 1 257777777765 5555555
Q ss_pred cCCCCCcceEeeccCCC
Q 037229 498 LIFAPNFRKIDINQSSH 514 (577)
Q Consensus 498 l~~l~~L~~L~l~~~~~ 514 (577)
+..+++|+.|++++|+.
T Consensus 290 ~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 290 PDELPEVDNLTLDGNPF 306 (310)
T ss_dssp TTSCCCCSCEECSSTTT
T ss_pred hhhCCCccEEECcCCCC
Confidence 56778888888887763
No 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.56 E-value=1.1e-15 Score=156.54 Aligned_cols=233 Identities=14% Similarity=0.094 Sum_probs=115.8
Q ss_pred CCCCCccEEeCccCCCCCcch----hhcCCCCcccEEEccCCCCCcc----cchhh-------hcCcCCCEEeccCCCCC
Q 037229 295 PTSPQLLTLFLNINPLSMIGG----DLFQFKPCLKVLNLSNSPCLEK----LPSRI-------SRLVSLQHLDLSSSGIL 359 (577)
Q Consensus 295 ~~~~~Lr~L~l~~~~~~~~~~----~~~~~l~~L~~L~L~~~~~l~~----lp~~i-------~~l~~L~~L~L~~~~i~ 359 (577)
..+++|++|++++|.+..... ..+..+++|++|+|++| .+.. +|..+ ..+++|++|+|++|.+.
T Consensus 29 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~-~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 29 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSC-CTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred hcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCccc-ccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 345666677776666443211 12456666777777666 4432 23333 46667777777776665
Q ss_pred c-----ccccccCCCcCcEecccccccccccchHH----hcCC---------CCCcEEEeeeecCcccccccccCCccCc
Q 037229 360 E-----LPKELGFLGNLACLNLENTSSHGTITRQL----RSNF---------SKPQVLRMFRFYGKAQYMKADSLPFGGS 421 (577)
Q Consensus 360 ~-----lp~~i~~L~~L~~L~l~~~~~l~~lp~~~----i~~l---------~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 421 (577)
. +|..+.++++|++|++++| .+...+... +..+ ++|++|++++|..... ..
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~----------~~ 176 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG----------SM 176 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG----------GH
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCC-CCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcH----------HH
Confidence 4 5666666667777777766 333221111 2223 6677777766651000 00
Q ss_pred ccccccccCCccCceeEEEecCccc--ccCCCccCccceeeecCCCCCCCcEEEecccCCceEEecccCCCCCCCCC-cc
Q 037229 422 EFLVEQLCCLKHLNVFSITLKSSYA--LQKPNSEHTRSLEVLPLAEMRQLDKLHIAFCTRLQEFEIECPGRNLMDLT-WL 498 (577)
Q Consensus 422 ~~~~~~l~~L~~L~~L~l~~~~~~~--l~~l~~~~l~~L~~~~l~~l~~L~~L~l~~~~~l~~l~l~~~~~~l~~l~-~l 498 (577)
......+..+++|+.|+++.+.... ...+.. ..+..+++|+.|++++|.--.. ....++ .+
T Consensus 177 ~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~--------~~l~~~~~L~~L~Ls~n~l~~~--------g~~~l~~~l 240 (386)
T 2ca6_A 177 KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLL--------EGLAYCQELKVLDLQDNTFTHL--------GSSALAIAL 240 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHH--------TTGGGCTTCCEEECCSSCCHHH--------HHHHHHHHG
T ss_pred HHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHH--------HHhhcCCCccEEECcCCCCCcH--------HHHHHHHHH
Confidence 0111345556666666666554321 000000 0234456666666665531000 001112 34
Q ss_pred CCCCCcceEeeccCCCcce----ec-----C-CCcccEEecCCcccccc-----cccCC-CCCCCcceEeeecC
Q 037229 499 IFAPNFRKIDINQSSHMEE----II-----C-IDRLRKVSGGYKKILKR-----IYPDV-LPLKNLKGITVSSC 556 (577)
Q Consensus 499 ~~l~~L~~L~l~~~~~~~~----~~-----~-~~~L~~L~l~~~~~l~~-----l~~~~-~~~~~L~~L~i~~c 556 (577)
..+++|+.|+|++|..... ++ + .++|+.|+|++|. +.. ++... ..+|+|++|++++|
T Consensus 241 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N 313 (386)
T 2ca6_A 241 KSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGN 313 (386)
T ss_dssp GGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred ccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCC
Confidence 5566666666666653221 11 1 2666666666654 333 44333 33566666666665
No 92
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.55 E-value=2.7e-15 Score=150.48 Aligned_cols=104 Identities=20% Similarity=0.159 Sum_probs=56.7
Q ss_pred CCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcc--cchhhhcCcCCCEEeccCCCCC-cccccccCCCcCcEe
Q 037229 298 PQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEK--LPSRISRLVSLQHLDLSSSGIL-ELPKELGFLGNLACL 374 (577)
Q Consensus 298 ~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~--lp~~i~~l~~L~~L~L~~~~i~-~lp~~i~~L~~L~~L 374 (577)
++++.|.+.++.+...+.. +..+++|++|++++| .+.. +|..+..+++|++|++++|.+. ..|..++.+++|++|
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~-~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L 147 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 147 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCC-CcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEE
Confidence 4555555555554444443 334566666666666 4542 4555555666666666666554 344455556666666
Q ss_pred cccccccccc--cchHHhcCCCCCcEEEeeee
Q 037229 375 NLENTSSHGT--ITRQLRSNFSKPQVLRMFRF 404 (577)
Q Consensus 375 ~l~~~~~l~~--lp~~~i~~l~~L~~L~l~~~ 404 (577)
++++|..+.. +|.. +.++++|++|++.+|
T Consensus 148 ~L~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 148 NLSGCSGFSEFALQTL-LSSCSRLDELNLSWC 178 (336)
T ss_dssp ECTTCBSCCHHHHHHH-HHHCTTCCEEECCCC
T ss_pred ECCCCCCCCHHHHHHH-HhcCCCCCEEcCCCC
Confidence 6666533432 3433 555666666666655
No 93
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.54 E-value=2e-14 Score=154.52 Aligned_cols=164 Identities=25% Similarity=0.270 Sum_probs=142.5
Q ss_pred eeEEEEecCCCCCCcCCCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchhhhcCcCCCEEeccCCC
Q 037229 278 TRRVSLKENKIGDLWETPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSSSG 357 (577)
Q Consensus 278 ~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~ 357 (577)
++.|.+.++.+..++....+++|+.|++++|.+..+++ +..+++|++|+|++| .+..+| .++.+++|++|+|++|.
T Consensus 45 L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~Ls~N~ 120 (605)
T 1m9s_A 45 IDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSLSLEHNG 120 (605)
T ss_dssp CCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEEECTTSC
T ss_pred CCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEEEecCCC
Confidence 88889999999999888999999999999999988887 889999999999999 999887 79999999999999999
Q ss_pred CCcccccccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCccCcee
Q 037229 358 ILELPKELGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHLNVF 437 (577)
Q Consensus 358 i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L 437 (577)
+..+| .+..|++|+.|+|++| .+..++. ++.+++|++|++++|. ... .+. +..+++|+.|
T Consensus 121 l~~l~-~l~~l~~L~~L~Ls~N-~l~~l~~--l~~l~~L~~L~Ls~N~--------------l~~-~~~-l~~l~~L~~L 180 (605)
T 1m9s_A 121 ISDIN-GLVHLPQLESLYLGNN-KITDITV--LSRLTKLDTLSLEDNQ--------------ISD-IVP-LAGLTKLQNL 180 (605)
T ss_dssp CCCCG-GGGGCTTCSEEECCSS-CCCCCGG--GGSCTTCSEEECCSSC--------------CCC-CGG-GTTCTTCCEE
T ss_pred CCCCc-cccCCCccCEEECCCC-ccCCchh--hcccCCCCEEECcCCc--------------CCC-chh-hccCCCCCEE
Confidence 99875 5899999999999999 7888855 9999999999999997 121 222 8899999999
Q ss_pred EEEecCcccccCCCccCccceeeecCCCCCCCcEEEecccC
Q 037229 438 SITLKSSYALQKPNSEHTRSLEVLPLAEMRQLDKLHIAFCT 478 (577)
Q Consensus 438 ~l~~~~~~~l~~l~~~~l~~L~~~~l~~l~~L~~L~l~~~~ 478 (577)
+++.+....++ .+..+++|+.|++++|.
T Consensus 181 ~Ls~N~i~~l~-------------~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 181 YLSKNHISDLR-------------ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp ECCSSCCCBCG-------------GGTTCTTCSEEECCSEE
T ss_pred ECcCCCCCCCh-------------HHccCCCCCEEEccCCc
Confidence 99987655432 25678899999998874
No 94
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.54 E-value=2.9e-14 Score=131.19 Aligned_cols=145 Identities=14% Similarity=0.072 Sum_probs=106.2
Q ss_pred eeEEEEecCCCCCCcCCCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcc-cchhhhcCcCCCEEeccCC
Q 037229 278 TRRVSLKENKIGDLWETPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEK-LPSRISRLVSLQHLDLSSS 356 (577)
Q Consensus 278 ~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~-lp~~i~~l~~L~~L~L~~~ 356 (577)
++.+.+.++.+..++....+++|++|++.+|.+..++. +..+++|++|++++| .+.. .|..++.+++|++|++++|
T Consensus 46 L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~Ls~n 122 (197)
T 4ezg_A 46 LTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGK-DVTSDKIPNLSGLTSLTLLDISHS 122 (197)
T ss_dssp CCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGG--GTTCTTCCEEEEECT-TCBGGGSCCCTTCTTCCEEECCSS
T ss_pred ccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchh--hhcCCCCCEEEeECC-ccCcccChhhcCCCCCCEEEecCC
Confidence 77788888887777766777888888888887666553 777888888888888 7764 5667778888888888888
Q ss_pred CCCc-ccccccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCccCc
Q 037229 357 GILE-LPKELGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHLN 435 (577)
Q Consensus 357 ~i~~-lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 435 (577)
.+.. .|..++.+++|++|++++|..+..+|. +..+++|++|++.+|. .. . +..+..+++|+
T Consensus 123 ~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~--------------i~-~-~~~l~~l~~L~ 184 (197)
T 4ezg_A 123 AHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDG--------------VH-D-YRGIEDFPKLN 184 (197)
T ss_dssp BCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBC--------------CC-C-CTTGGGCSSCC
T ss_pred ccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCC--------------Cc-C-hHHhccCCCCC
Confidence 7774 566677888888888888844777774 7788888888887775 11 1 22566777777
Q ss_pred eeEEEecC
Q 037229 436 VFSITLKS 443 (577)
Q Consensus 436 ~L~l~~~~ 443 (577)
.|+++.+.
T Consensus 185 ~L~l~~N~ 192 (197)
T 4ezg_A 185 QLYAFSQT 192 (197)
T ss_dssp EEEECBC-
T ss_pred EEEeeCcc
Confidence 77777654
No 95
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.54 E-value=5.1e-15 Score=142.72 Aligned_cols=114 Identities=18% Similarity=0.225 Sum_probs=71.0
Q ss_pred EecCCCCCCcCCCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchhhhcCcCCCEEeccCCCCCccc
Q 037229 283 LKENKIGDLWETPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSSSGILELP 362 (577)
Q Consensus 283 l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp 362 (577)
+..+.+..++....+++|++|++.+|.+..++. +..+++|++|++++| .+..+|. ++.+++|++|++++|.++.+|
T Consensus 26 l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~N~l~~l~ 101 (263)
T 1xeu_A 26 LGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVNRNRLKNLN 101 (263)
T ss_dssp HTCSCTTSEECHHHHTTCSEEECTTSCCCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCSSCCSCCT
T ss_pred hcCCCcccccchhhcCcCcEEECcCCCcccchH--HhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECCCCccCCcC
Confidence 344455555544566666666666666666652 566666666666666 6666665 666666666666666666665
Q ss_pred ccccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeec
Q 037229 363 KELGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFY 405 (577)
Q Consensus 363 ~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 405 (577)
.... .+|++|++++| .+..+|. ++++++|++|++++|.
T Consensus 102 ~~~~--~~L~~L~L~~N-~l~~~~~--l~~l~~L~~L~Ls~N~ 139 (263)
T 1xeu_A 102 GIPS--ACLSRLFLDNN-ELRDTDS--LIHLKNLEILSIRNNK 139 (263)
T ss_dssp TCCC--SSCCEEECCSS-CCSBSGG--GTTCTTCCEEECTTSC
T ss_pred cccc--CcccEEEccCC-ccCCChh--hcCcccccEEECCCCc
Confidence 4332 66666666666 5566554 6666666666666664
No 96
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.54 E-value=1.6e-15 Score=152.10 Aligned_cols=125 Identities=22% Similarity=0.127 Sum_probs=99.3
Q ss_pred CccEEeCccCCCCCcchhhcCCC--CcccEEEccCCCCCcccchhhhcCcCCCEEeccCCCCCc--ccccccCCCcCcEe
Q 037229 299 QLLTLFLNINPLSMIGGDLFQFK--PCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSSSGILE--LPKELGFLGNLACL 374 (577)
Q Consensus 299 ~Lr~L~l~~~~~~~~~~~~~~~l--~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~--lp~~i~~L~~L~~L 374 (577)
.++.++++++.+. +..+..+ +.+++|+++++ .+...+..+..+++|++|++++|.+.. +|..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n-~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRS-FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTC-EECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCc-cccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 4678888887644 3446666 89999999999 888777778899999999999998864 78889999999999
Q ss_pred ccccccccc-ccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcc-cccccccCCccCceeEEEec
Q 037229 375 NLENTSSHG-TITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSE-FLVEQLCCLKHLNVFSITLK 442 (577)
Q Consensus 375 ~l~~~~~l~-~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~L~~L~~L~l~~~ 442 (577)
++++| .+. ..|.. ++++++|++|++.+|.. ... .....+..+++|+.|+++.+
T Consensus 124 ~L~~~-~l~~~~~~~-l~~~~~L~~L~L~~~~~-------------l~~~~l~~~~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 124 SLEGL-RLSDPIVNT-LAKNSNLVRLNLSGCSG-------------FSEFALQTLLSSCSRLDELNLSWC 178 (336)
T ss_dssp ECTTC-BCCHHHHHH-HTTCTTCSEEECTTCBS-------------CCHHHHHHHHHHCTTCCEEECCCC
T ss_pred eCcCc-ccCHHHHHH-HhcCCCCCEEECCCCCC-------------CCHHHHHHHHhcCCCCCEEcCCCC
Confidence 99999 455 45655 89999999999999941 122 23444677888888888866
No 97
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.53 E-value=1.8e-14 Score=132.63 Aligned_cols=105 Identities=17% Similarity=0.204 Sum_probs=76.7
Q ss_pred CCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchhhhcCcCCCEEeccCCCCCc-ccccccCCCcCcE
Q 037229 295 PTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSSSGILE-LPKELGFLGNLAC 373 (577)
Q Consensus 295 ~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~-lp~~i~~L~~L~~ 373 (577)
..+++|+.|.+.+|.+..+|. +..+++|++|++++| .+..++ .+..+++|++|++++|.+.. .|..++.+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTT--GGGCTTCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCccChHH--HhcCCCCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 456777888888877777663 677788888888888 776665 67778888888888877764 5667777888888
Q ss_pred ecccccccccc-cchHHhcCCCCCcEEEeeeec
Q 037229 374 LNLENTSSHGT-ITRQLRSNFSKPQVLRMFRFY 405 (577)
Q Consensus 374 L~l~~~~~l~~-lp~~~i~~l~~L~~L~l~~~~ 405 (577)
|++++| .+.. .|.. ++++++|++|++++|.
T Consensus 117 L~Ls~n-~i~~~~~~~-l~~l~~L~~L~L~~n~ 147 (197)
T 4ezg_A 117 LDISHS-AHDDSILTK-INTLPKVNSIDLSYNG 147 (197)
T ss_dssp EECCSS-BCBGGGHHH-HTTCSSCCEEECCSCT
T ss_pred EEecCC-ccCcHhHHH-HhhCCCCCEEEccCCC
Confidence 888877 4544 4444 7777788888777774
No 98
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.53 E-value=4.8e-14 Score=132.04 Aligned_cols=148 Identities=18% Similarity=0.218 Sum_probs=111.0
Q ss_pred eEEEEecCCCCCCcCCCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCccc-chhhhcCcCCCEEeccCCC
Q 037229 279 RRVSLKENKIGDLWETPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKL-PSRISRLVSLQHLDLSSSG 357 (577)
Q Consensus 279 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~L~~~~ 357 (577)
+.+.+.++.+..+|... .++|+.|++.+|.+..++...|..+++|++|+|++| .+..+ |..+..+++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l-~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNL-PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSC-CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCcc-CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCCc
Confidence 34566667777776543 267888888888888888766888888888888888 88776 6678888888888888888
Q ss_pred CCccccc-ccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCccCce
Q 037229 358 ILELPKE-LGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHLNV 436 (577)
Q Consensus 358 i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~ 436 (577)
++.+|.. +..+++|++|++++| .+..++...+.++++|++|++.+|. ........+..+++|+.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~--------------l~~~~~~~~~~l~~L~~ 156 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNK--------------LQTIAKGTFSPLRAIQT 156 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC--------------CSCCCTTTTTTCTTCCE
T ss_pred CCccCHhHccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCCc--------------CCEECHHHHhCCCCCCE
Confidence 8888876 577888888888888 6777765447888888888888886 22223344667777777
Q ss_pred eEEEecC
Q 037229 437 FSITLKS 443 (577)
Q Consensus 437 L~l~~~~ 443 (577)
|+++.+.
T Consensus 157 L~L~~N~ 163 (220)
T 2v9t_B 157 MHLAQNP 163 (220)
T ss_dssp EECCSSC
T ss_pred EEeCCCC
Confidence 7777554
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.50 E-value=1.7e-13 Score=145.68 Aligned_cols=186 Identities=17% Similarity=0.186 Sum_probs=145.0
Q ss_pred eeEEEEecCCCCCCcCCCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchhhhcCcCCCEEeccCCC
Q 037229 278 TRRVSLKENKIGDLWETPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSSSG 357 (577)
Q Consensus 278 ~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~ 357 (577)
++.+.+.++.+..+|... +++|++|++++|.+..+| ..+++|++|++++| .++.+|. ++. +|++|+|++|.
T Consensus 61 L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~N~ 131 (571)
T 3cvr_A 61 FSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP----ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDNNQ 131 (571)
T ss_dssp CSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCSSC
T ss_pred ccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc----cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCCCc
Confidence 889999999998888754 488999999999998888 34789999999999 9999997 665 99999999999
Q ss_pred CCcccccccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCccCcee
Q 037229 358 ILELPKELGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHLNVF 437 (577)
Q Consensus 358 i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L 437 (577)
++.+|. .+++|++|++++| .++.+|. .+++|++|++++|.. . ..+. +. ++|+.|
T Consensus 132 l~~lp~---~l~~L~~L~Ls~N-~l~~lp~----~l~~L~~L~Ls~N~L--------------~-~lp~-l~--~~L~~L 185 (571)
T 3cvr_A 132 LTMLPE---LPALLEYINADNN-QLTMLPE----LPTSLEVLSVRNNQL--------------T-FLPE-LP--ESLEAL 185 (571)
T ss_dssp CSCCCC---CCTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCC--------------S-CCCC-CC--TTCCEE
T ss_pred CCCCCC---cCccccEEeCCCC-ccCcCCC----cCCCcCEEECCCCCC--------------C-Ccch-hh--CCCCEE
Confidence 999998 6899999999999 7888886 578999999999971 1 1222 44 899999
Q ss_pred EEEecCcccccCCCccCccceeeecCCCCCCCcEEEecccCCceEEecccCCCCCCCCC-ccCCCCCcceEeeccCCCcc
Q 037229 438 SITLKSSYALQKPNSEHTRSLEVLPLAEMRQLDKLHIAFCTRLQEFEIECPGRNLMDLT-WLIFAPNFRKIDINQSSHME 516 (577)
Q Consensus 438 ~l~~~~~~~l~~l~~~~l~~L~~~~l~~l~~L~~L~l~~~~~l~~l~l~~~~~~l~~l~-~l~~l~~L~~L~l~~~~~~~ 516 (577)
+++.+.+..++.+.. +| ......|+.|+++++ .++.+| .+..+++|+.|+|++|....
T Consensus 186 ~Ls~N~L~~lp~~~~----~L----~~~~~~L~~L~Ls~N-------------~l~~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 186 DVSTNLLESLPAVPV----RN----HHSEETEIFFRCREN-------------RITHIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp ECCSSCCSSCCCCC----------------CCEEEECCSS-------------CCCCCCGGGGGSCTTEEEECCSSSCCH
T ss_pred ECcCCCCCchhhHHH----hh----hcccccceEEecCCC-------------cceecCHHHhcCCCCCEEEeeCCcCCC
Confidence 999887665444111 11 122334488888776 666666 57779999999999998655
Q ss_pred eec
Q 037229 517 EII 519 (577)
Q Consensus 517 ~~~ 519 (577)
.++
T Consensus 245 ~~p 247 (571)
T 3cvr_A 245 RIR 247 (571)
T ss_dssp HHH
T ss_pred cCH
Confidence 443
No 100
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.50 E-value=6.6e-14 Score=134.93 Aligned_cols=146 Identities=21% Similarity=0.185 Sum_probs=124.5
Q ss_pred cCeeEEEEecCCCCCCcCCCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchhhhcCcCCCEEeccC
Q 037229 276 EGTRRVSLKENKIGDLWETPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSS 355 (577)
Q Consensus 276 ~~~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~ 355 (577)
..++.+.+.++.+..++....+++|++|++++|.+..+++ +..+++|++|++++| .++.+|... . .+|++|++++
T Consensus 41 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N-~l~~l~~~~-~-~~L~~L~L~~ 115 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRN-RLKNLNGIP-S-ACLSRLFLDN 115 (263)
T ss_dssp TTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSS-CCSCCTTCC-C-SSCCEEECCS
T ss_pred CcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCC-ccCCcCccc-c-CcccEEEccC
Confidence 3489999999999988877889999999999999988887 889999999999999 999887543 3 8999999999
Q ss_pred CCCCcccccccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCccCc
Q 037229 356 SGILELPKELGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHLN 435 (577)
Q Consensus 356 ~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 435 (577)
|.++.+| .++.+++|++|++++| .+..+|. ++.+++|++|++.+|. ... ...+..+++|+
T Consensus 116 N~l~~~~-~l~~l~~L~~L~Ls~N-~i~~~~~--l~~l~~L~~L~L~~N~--------------i~~--~~~l~~l~~L~ 175 (263)
T 1xeu_A 116 NELRDTD-SLIHLKNLEILSIRNN-KLKSIVM--LGFLSKLEVLDLHGNE--------------ITN--TGGLTRLKKVN 175 (263)
T ss_dssp SCCSBSG-GGTTCTTCCEEECTTS-CCCBCGG--GGGCTTCCEEECTTSC--------------CCB--CTTSTTCCCCC
T ss_pred CccCCCh-hhcCcccccEEECCCC-cCCCChH--HccCCCCCEEECCCCc--------------Ccc--hHHhccCCCCC
Confidence 9999886 5899999999999999 7888875 8999999999999987 111 16678888999
Q ss_pred eeEEEecCccc
Q 037229 436 VFSITLKSSYA 446 (577)
Q Consensus 436 ~L~l~~~~~~~ 446 (577)
.|+++.+.+..
T Consensus 176 ~L~l~~N~~~~ 186 (263)
T 1xeu_A 176 WIDLTGQKCVN 186 (263)
T ss_dssp EEEEEEEEEEC
T ss_pred EEeCCCCcccC
Confidence 99998776543
No 101
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.50 E-value=1.5e-13 Score=129.64 Aligned_cols=147 Identities=18% Similarity=0.142 Sum_probs=114.7
Q ss_pred eEEEEecCCCCCCcCCCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchh-hhcCcCCCEEeccCCC
Q 037229 279 RRVSLKENKIGDLWETPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSR-ISRLVSLQHLDLSSSG 357 (577)
Q Consensus 279 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~L~~~~ 357 (577)
..+...++.+..+|... .++|++|++++|.+..+++..|..+++|++|+|++| .+..+|.. +..+++|++|+|++|.
T Consensus 22 ~~v~c~~~~l~~ip~~~-~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGI-PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEeEccCCCcCccCCCC-CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCCc
Confidence 45666777777777643 378889999998888887777888889999999999 88888754 6788899999999998
Q ss_pred CCccccc-ccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCccCce
Q 037229 358 ILELPKE-LGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHLNV 436 (577)
Q Consensus 358 i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~ 436 (577)
++.+|.. +..+++|++|++++| .+..+|.. +.++++|++|++.+|. ........+..+++|+.
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-~~~l~~L~~L~L~~N~--------------l~~~~~~~~~~l~~L~~ 163 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCN-KLTELPRG-IERLTHLTHLALDQNQ--------------LKSIPHGAFDRLSSLTH 163 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSS-CCCSCCTT-GGGCTTCSEEECCSSC--------------CCCCCTTTTTTCTTCCE
T ss_pred CCccChhHhCcchhhCeEeccCC-cccccCcc-cccCCCCCEEECCCCc--------------CCccCHHHHhCCCCCCE
Confidence 8888766 578889999999988 78888877 7888999999998886 12222345677788888
Q ss_pred eEEEecC
Q 037229 437 FSITLKS 443 (577)
Q Consensus 437 L~l~~~~ 443 (577)
|++..+.
T Consensus 164 L~l~~N~ 170 (229)
T 3e6j_A 164 AYLFGNP 170 (229)
T ss_dssp EECTTSC
T ss_pred EEeeCCC
Confidence 8877554
No 102
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.49 E-value=1.3e-13 Score=129.08 Aligned_cols=148 Identities=16% Similarity=0.200 Sum_probs=100.6
Q ss_pred eEEEEecCCCCCCcCCCCCCCccEEeCccCCCCCc-chhhcCCCCcccEEEccCCCCCcccch-hhhcCcCCCEEeccCC
Q 037229 279 RRVSLKENKIGDLWETPTSPQLLTLFLNINPLSMI-GGDLFQFKPCLKVLNLSNSPCLEKLPS-RISRLVSLQHLDLSSS 356 (577)
Q Consensus 279 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~-~~~~~~~l~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~L~~~ 356 (577)
+.+.++++.+..+|... ...++.|++++|.+..+ +..+|..+++|++|+++++ .++.++. .++.+++|++|+|++|
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCC
Confidence 35666677776666532 34567777777777666 3345677777788888777 7777654 6777777788888777
Q ss_pred CCCccccc-ccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCccCc
Q 037229 357 GILELPKE-LGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHLN 435 (577)
Q Consensus 357 ~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 435 (577)
.+..+|.. +..+++|++|++++| .+..++...+.++++|++|++.+|. .....+..+..+++|+
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~--------------l~~~~~~~~~~l~~L~ 156 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQ--------------ITTVAPGAFDTLHSLS 156 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTSC--------------CCCBCTTTTTTCTTCC
T ss_pred ccCccCHhHhcCCcCCCEEECCCC-cCCeECHhHcCCCccCCEEECCCCc--------------CCEECHHHhcCCCCCC
Confidence 77776654 677777777877777 5666644337777777777777775 2233345566677777
Q ss_pred eeEEEecC
Q 037229 436 VFSITLKS 443 (577)
Q Consensus 436 ~L~l~~~~ 443 (577)
.|+++.+.
T Consensus 157 ~L~L~~N~ 164 (220)
T 2v70_A 157 TLNLLANP 164 (220)
T ss_dssp EEECCSCC
T ss_pred EEEecCcC
Confidence 77776554
No 103
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.48 E-value=3.5e-13 Score=143.34 Aligned_cols=178 Identities=21% Similarity=0.178 Sum_probs=133.3
Q ss_pred CCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchhhhcCcCCCEEeccCCCCCcccccccCCCcCcEeccc
Q 037229 298 PQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSSSGILELPKELGFLGNLACLNLE 377 (577)
Q Consensus 298 ~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~ 377 (577)
.+|+.|++.+|.+..+|..+ +++|++|+|++| .++.+| +.+++|++|++++|.++.+|. +++ +|++|+++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l---~~~L~~L~Ls~N-~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL---PPQITVLEITQN-ALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC---CTTCSEEECCSS-CCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECC
T ss_pred CCccEEEeCCCCCCccCHhH---cCCCCEEECcCC-CCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECC
Confidence 48999999999998888874 378999999999 999999 568999999999999999998 765 99999999
Q ss_pred ccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCccCceeEEEecCcccccCCCccCccc
Q 037229 378 NTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHLNVFSITLKSSYALQKPNSEHTRS 457 (577)
Q Consensus 378 ~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~l~~~~l~~ 457 (577)
+| .+..+|. .+++|++|++++|.. . ..+. .+++|+.|+++.+....++.
T Consensus 129 ~N-~l~~lp~----~l~~L~~L~Ls~N~l--------------~-~lp~---~l~~L~~L~Ls~N~L~~lp~-------- 177 (571)
T 3cvr_A 129 NN-QLTMLPE----LPALLEYINADNNQL--------------T-MLPE---LPTSLEVLSVRNNQLTFLPE-------- 177 (571)
T ss_dssp SS-CCSCCCC----CCTTCCEEECCSSCC--------------S-CCCC---CCTTCCEEECCSSCCSCCCC--------
T ss_pred CC-cCCCCCC----cCccccEEeCCCCcc--------------C-cCCC---cCCCcCEEECCCCCCCCcch--------
Confidence 99 7888886 689999999999971 1 1222 56789999998776544332
Q ss_pred eeeecCCCCCCCcEEEecccCCceEEecccCCCCCCCCCccCCCCCc-------ceEeeccCCCcceecCC----CcccE
Q 037229 458 LEVLPLAEMRQLDKLHIAFCTRLQEFEIECPGRNLMDLTWLIFAPNF-------RKIDINQSSHMEEIICI----DRLRK 526 (577)
Q Consensus 458 L~~~~l~~l~~L~~L~l~~~~~l~~l~l~~~~~~l~~l~~l~~l~~L-------~~L~l~~~~~~~~~~~~----~~L~~ 526 (577)
+. ++|+.|+++++ .++.+|.+.. +| +.|++++|.. ..++.. ++|+.
T Consensus 178 -----l~--~~L~~L~Ls~N-------------~L~~lp~~~~--~L~~~~~~L~~L~Ls~N~l-~~lp~~l~~l~~L~~ 234 (571)
T 3cvr_A 178 -----LP--ESLEALDVSTN-------------LLESLPAVPV--RNHHSEETEIFFRCRENRI-THIPENILSLDPTCT 234 (571)
T ss_dssp -----CC--TTCCEEECCSS-------------CCSSCCCCC----------CCEEEECCSSCC-CCCCGGGGGSCTTEE
T ss_pred -----hh--CCCCEEECcCC-------------CCCchhhHHH--hhhcccccceEEecCCCcc-eecCHHHhcCCCCCE
Confidence 22 67888888876 4444444222 55 8888888764 344432 78888
Q ss_pred EecCCcccccccc
Q 037229 527 VSGGYKKILKRIY 539 (577)
Q Consensus 527 L~l~~~~~l~~l~ 539 (577)
|+|++++--..++
T Consensus 235 L~L~~N~l~~~~p 247 (571)
T 3cvr_A 235 IILEDNPLSSRIR 247 (571)
T ss_dssp EECCSSSCCHHHH
T ss_pred EEeeCCcCCCcCH
Confidence 8888865333333
No 104
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.46 E-value=4.2e-13 Score=124.46 Aligned_cols=146 Identities=20% Similarity=0.204 Sum_probs=102.7
Q ss_pred EEEEecCCCCCCcCCCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchh-hhcCcCCCEEeccCCCC
Q 037229 280 RVSLKENKIGDLWETPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSR-ISRLVSLQHLDLSSSGI 358 (577)
Q Consensus 280 ~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~L~~~~i 358 (577)
.+...++.+..+|.. -.++|++|++.+|.+..++...|..+++|++|+++++ .++.+|.. +..+++|++|++++|.+
T Consensus 11 ~v~c~~~~l~~~p~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 11 TVECYSQGRTSVPTG-IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp EEECCSSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEecCCCccCCCCC-CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCcC
Confidence 455555666666543 2457888888888877777777778888888888888 78777654 57788888888888888
Q ss_pred Cccccc-ccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCccCcee
Q 037229 359 LELPKE-LGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHLNVF 437 (577)
Q Consensus 359 ~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L 437 (577)
..+|.. +..+++|++|++++| .+..+|...+.++++|++|++.+|. ........+..+++|+.|
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~--------------l~~~~~~~~~~l~~L~~L 153 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQ--------------LKSVPDGVFDRLTSLQYI 153 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC--------------CSCCCTTTTTTCTTCCEE
T ss_pred CccCHhHhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCCc--------------cceeCHHHhccCCCccEE
Confidence 877765 577888888888888 6777776556778888888888775 121222235556666666
Q ss_pred EEEec
Q 037229 438 SITLK 442 (577)
Q Consensus 438 ~l~~~ 442 (577)
+++.+
T Consensus 154 ~l~~N 158 (208)
T 2o6s_A 154 WLHDN 158 (208)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 66544
No 105
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.46 E-value=9.4e-14 Score=137.47 Aligned_cols=201 Identities=12% Similarity=0.059 Sum_probs=112.9
Q ss_pred CCcccEEEccCCCCCc-ccchhh--hcCcCCCEEeccCCCCCcc-c----ccccCCCcCcEecccccccccccchHHhcC
Q 037229 321 KPCLKVLNLSNSPCLE-KLPSRI--SRLVSLQHLDLSSSGILEL-P----KELGFLGNLACLNLENTSSHGTITRQLRSN 392 (577)
Q Consensus 321 l~~L~~L~L~~~~~l~-~lp~~i--~~l~~L~~L~L~~~~i~~l-p----~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~ 392 (577)
+.+|++|++++| .+. ..|..+ +.+++|++|++++|.+... | ..+..+++|++|++++| .+..+|...+++
T Consensus 90 ~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~ 167 (310)
T 4glp_A 90 YSRLKELTLEDL-KITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA-HSPAFSCEQVRA 167 (310)
T ss_dssp HSCCCEEEEESC-CCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC-SSCCCCTTSCCC
T ss_pred cCceeEEEeeCC-EeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCC-CcchhhHHHhcc
Confidence 345777777777 555 334454 6677777777777766532 1 23445667777777777 555555433667
Q ss_pred CCCCcEEEeeeecCcccccccccCCccCcccccccccCCccCceeEEEecCcccccCCCccCccceeeecCCCCCCCcEE
Q 037229 393 FSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHLNVFSITLKSSYALQKPNSEHTRSLEVLPLAEMRQLDKL 472 (577)
Q Consensus 393 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~l~~~~l~~L~~~~l~~l~~L~~L 472 (577)
+++|++|++++|...+. ........++.+++|+.|+++.+....++..... -+..+++|++|
T Consensus 168 l~~L~~L~Ls~N~l~~~----------~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--------l~~~l~~L~~L 229 (310)
T 4glp_A 168 FPALTSLDLSDNPGLGE----------RGLMAALCPHKFPAIQNLALRNTGMETPTGVCAA--------LAAAGVQPHSL 229 (310)
T ss_dssp CTTCCEEECCSCTTCHH----------HHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHH--------HHHHTCCCSSE
T ss_pred CCCCCEEECCCCCCccc----------hhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHH--------HHhcCCCCCEE
Confidence 77777777776651000 0000111234566677777765554322211000 02345677777
Q ss_pred EecccCCceEEecccCCCCCCCC--CccCC---CCCcceEeeccCCCcceecCC--CcccEEecCCcccccccccCCCCC
Q 037229 473 HIAFCTRLQEFEIECPGRNLMDL--TWLIF---APNFRKIDINQSSHMEEIICI--DRLRKVSGGYKKILKRIYPDVLPL 545 (577)
Q Consensus 473 ~l~~~~~l~~l~l~~~~~~l~~l--~~l~~---l~~L~~L~l~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~~~~~ 545 (577)
+++++ .+... +.++. +++|++|++++|... .++.. ++|+.|+++++. ++.++. ...+
T Consensus 230 ~Ls~N-------------~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~L~~L~Ls~N~-l~~~~~-~~~l 293 (310)
T 4glp_A 230 DLSHN-------------SLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLPAKLRVLDLSSNR-LNRAPQ-PDEL 293 (310)
T ss_dssp ECTTS-------------CCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCCSCCSCEECCSCC-CCSCCC-TTSC
T ss_pred ECCCC-------------CCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhcCCCCEEECCCCc-CCCCch-hhhC
Confidence 77765 22222 12333 368888888777644 44333 778888888753 666654 4567
Q ss_pred CCcceEeeecCC
Q 037229 546 KNLKGITVSSCP 557 (577)
Q Consensus 546 ~~L~~L~i~~c~ 557 (577)
++|+.|++++.+
T Consensus 294 ~~L~~L~L~~N~ 305 (310)
T 4glp_A 294 PEVDNLTLDGNP 305 (310)
T ss_dssp CCCSCEECSSTT
T ss_pred CCccEEECcCCC
Confidence 888888887653
No 106
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.46 E-value=2.2e-13 Score=126.39 Aligned_cols=170 Identities=15% Similarity=0.178 Sum_probs=121.4
Q ss_pred cEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchh-hhcCcCCCEEeccCCCCCccccc-ccCCCcCcEecccc
Q 037229 301 LTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSR-ISRLVSLQHLDLSSSGILELPKE-LGFLGNLACLNLEN 378 (577)
Q Consensus 301 r~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~ 378 (577)
+.+...++.+..+|..+ .++|++|+++++ .++.+|.. ++.+++|++|++++|.++.+|.. +..+++|++|++++
T Consensus 10 ~~v~c~~~~l~~~p~~~---~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI---PAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCSSCCSCC---CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCccCCCCCC---CCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 56777788788888753 468999999999 99888754 68899999999999999988876 68899999999999
Q ss_pred cccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCccCceeEEEecCcccccCCCccCccce
Q 037229 379 TSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHLNVFSITLKSSYALQKPNSEHTRSL 458 (577)
Q Consensus 379 ~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~l~~~~l~~L 458 (577)
| .+..+|...++++++|++|++++|. ........+..+++|+.|+++.+....+.. .
T Consensus 86 n-~l~~~~~~~~~~l~~L~~L~L~~N~--------------l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~---~----- 142 (208)
T 2o6s_A 86 N-QLQSLPNGVFDKLTQLKELALNTNQ--------------LQSLPDGVFDKLTQLKDLRLYQNQLKSVPD---G----- 142 (208)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCSSC--------------CCCCCTTTTTTCTTCCEEECCSSCCSCCCT---T-----
T ss_pred C-cCCccCHhHhcCccCCCEEEcCCCc--------------CcccCHhHhccCCcCCEEECCCCccceeCH---H-----
Confidence 9 7888887657899999999999886 222223346677778877777654332221 1
Q ss_pred eeecCCCCCCCcEEEecccCCceEEecccCCCCCCCCCccCCCCCcceEeeccCCCccee
Q 037229 459 EVLPLAEMRQLDKLHIAFCTRLQEFEIECPGRNLMDLTWLIFAPNFRKIDINQSSHMEEI 518 (577)
Q Consensus 459 ~~~~l~~l~~L~~L~l~~~~~l~~l~l~~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~~~ 518 (577)
.+..+++|+.|++.++. +.+.+++|+.|+++.+.....+
T Consensus 143 ---~~~~l~~L~~L~l~~N~------------------~~~~~~~l~~L~~~~n~~~g~i 181 (208)
T 2o6s_A 143 ---VFDRLTSLQYIWLHDNP------------------WDCTCPGIRYLSEWINKHSGVV 181 (208)
T ss_dssp ---TTTTCTTCCEEECCSCC------------------BCCCTTTTHHHHHHHHHCTTTB
T ss_pred ---HhccCCCccEEEecCCC------------------eecCCCCHHHHHHHHHhCCcee
Confidence 13456666666666541 2334566666666655543333
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.46 E-value=3.4e-13 Score=126.22 Aligned_cols=148 Identities=20% Similarity=0.221 Sum_probs=122.9
Q ss_pred ccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccch-hhhcCcCCCEEeccCCCCCcc-cccccCCCcCcEeccc
Q 037229 300 LLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPS-RISRLVSLQHLDLSSSGILEL-PKELGFLGNLACLNLE 377 (577)
Q Consensus 300 Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~l~ 377 (577)
-+.+++.++.+..+|..+ ...|+.|+++++ .++.+|. .+..+++|++|+|++|.+..+ |..+..+++|++|+++
T Consensus 13 ~~~v~c~~~~l~~iP~~l---~~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 13 NNIVDCRGKGLTEIPTNL---PETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88 (220)
T ss_dssp TTEEECTTSCCSSCCSSC---CTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred CCEEEcCCCCcCcCCCcc---CcCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence 367889999999999863 378999999999 9998865 789999999999999999987 6779999999999999
Q ss_pred ccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCccCceeEEEecCcccccCCCccCccc
Q 037229 378 NTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHLNVFSITLKSSYALQKPNSEHTRS 457 (577)
Q Consensus 378 ~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~l~~~~l~~ 457 (577)
+| .+..+|.+.+.++++|++|++.+|. .....+..+..+++|+.|+++.+....+..
T Consensus 89 ~N-~l~~l~~~~f~~l~~L~~L~L~~N~--------------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-------- 145 (220)
T 2v9t_B 89 GN-KITELPKSLFEGLFSLQLLLLNANK--------------INCLRVDAFQDLHNLNLLSLYDNKLQTIAK-------- 145 (220)
T ss_dssp SS-CCCCCCTTTTTTCTTCCEEECCSSC--------------CCCCCTTTTTTCTTCCEEECCSSCCSCCCT--------
T ss_pred CC-cCCccCHhHccCCCCCCEEECCCCC--------------CCEeCHHHcCCCCCCCEEECCCCcCCEECH--------
Confidence 99 8899998767899999999999997 333445678899999999999776544332
Q ss_pred eeeecCCCCCCCcEEEeccc
Q 037229 458 LEVLPLAEMRQLDKLHIAFC 477 (577)
Q Consensus 458 L~~~~l~~l~~L~~L~l~~~ 477 (577)
..+..+++|+.|++.+.
T Consensus 146 ---~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 146 ---GTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp ---TTTTTCTTCCEEECCSS
T ss_pred ---HHHhCCCCCCEEEeCCC
Confidence 12456778888888775
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.45 E-value=3.7e-13 Score=126.83 Aligned_cols=127 Identities=26% Similarity=0.316 Sum_probs=117.0
Q ss_pred CeeEEEEecCCCCCCcC--CCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchh-hhcCcCCCEEec
Q 037229 277 GTRRVSLKENKIGDLWE--TPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSR-ISRLVSLQHLDL 353 (577)
Q Consensus 277 ~~r~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~L 353 (577)
.++.+.+.++.+..++. ...+++|++|++.+|.+..++...|..+++|++|+|++| .++.+|.. +..+++|++|+|
T Consensus 41 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 41 NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC-cCCccChhHhCcchhhCeEec
Confidence 48999999999988754 478999999999999999999888999999999999999 99999764 689999999999
Q ss_pred cCCCCCcccccccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeec
Q 037229 354 SSSGILELPKELGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFY 405 (577)
Q Consensus 354 ~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 405 (577)
++|.+..+|..+..+++|++|++++| .+..+|...+..+++|++|++.+|.
T Consensus 120 s~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 120 CCNKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CSSCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred cCCcccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCC
Confidence 99999999999999999999999999 8889987668999999999999986
No 109
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.45 E-value=3.4e-14 Score=145.29 Aligned_cols=227 Identities=15% Similarity=0.144 Sum_probs=158.6
Q ss_pred eeEEEEecCCCCCCc------CCCCCCCccEEeCccCCCCC----cchhh------cCCCCcccEEEccCCCCCcc----
Q 037229 278 TRRVSLKENKIGDLW------ETPTSPQLLTLFLNINPLSM----IGGDL------FQFKPCLKVLNLSNSPCLEK---- 337 (577)
Q Consensus 278 ~r~l~l~~~~~~~l~------~~~~~~~Lr~L~l~~~~~~~----~~~~~------~~~l~~L~~L~L~~~~~l~~---- 337 (577)
++.+.+.++.+.... ....+++|++|++++|.+.. +|..+ +..+++|++|+|++| .+..
T Consensus 34 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~ 112 (386)
T 2ca6_A 34 VKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-AFGPTAQE 112 (386)
T ss_dssp CCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC-CCCTTTHH
T ss_pred ccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC-cCCHHHHH
Confidence 789999988775421 13578999999999986443 34442 478999999999999 8876
Q ss_pred -cchhhhcCcCCCEEeccCCCCCc-----ccccccCC---------CcCcEeccccccccc--ccch--HHhcCCCCCcE
Q 037229 338 -LPSRISRLVSLQHLDLSSSGILE-----LPKELGFL---------GNLACLNLENTSSHG--TITR--QLRSNFSKPQV 398 (577)
Q Consensus 338 -lp~~i~~l~~L~~L~L~~~~i~~-----lp~~i~~L---------~~L~~L~l~~~~~l~--~lp~--~~i~~l~~L~~ 398 (577)
+|..+..+++|++|+|++|.+.. ++..+..+ ++|++|++++| .+. .+|. ..+..+++|++
T Consensus 113 ~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~ 191 (386)
T 2ca6_A 113 PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENGSMKEWAKTFQSHRLLHT 191 (386)
T ss_dssp HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-CCTGGGHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC-CCCcHHHHHHHHHHHhCCCcCE
Confidence 78889999999999999998863 44445555 89999999999 554 4552 22778999999
Q ss_pred EEeeeecCcccccccccCCccCcccccc-cccCCccCceeEEEecCcccc--cCCCccCccceeeecCCCCCCCcEEEec
Q 037229 399 LRMFRFYGKAQYMKADSLPFGGSEFLVE-QLCCLKHLNVFSITLKSSYAL--QKPNSEHTRSLEVLPLAEMRQLDKLHIA 475 (577)
Q Consensus 399 L~l~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~L~~L~~L~l~~~~~~~l--~~l~~~~l~~L~~~~l~~l~~L~~L~l~ 475 (577)
|++.+|..... ....... .+..+++|+.|+++.+..... ..++ ..+..+++|+.|+++
T Consensus 192 L~L~~n~l~~~----------g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~---------~~l~~~~~L~~L~L~ 252 (386)
T 2ca6_A 192 VKMVQNGIRPE----------GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA---------IALKSWPNLRELGLN 252 (386)
T ss_dssp EECCSSCCCHH----------HHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH---------HHGGGCTTCCEEECT
T ss_pred EECcCCCCCHh----------HHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHH---------HHHccCCCcCEEECC
Confidence 99999971100 0001233 778899999999997764210 1111 124568899999999
Q ss_pred ccCCceEEecccCCCCCCCCC-cc--CCCCCcceEeeccCCCcc----eecCC-----CcccEEecCCcc
Q 037229 476 FCTRLQEFEIECPGRNLMDLT-WL--IFAPNFRKIDINQSSHME----EIICI-----DRLRKVSGGYKK 533 (577)
Q Consensus 476 ~~~~l~~l~l~~~~~~l~~l~-~l--~~l~~L~~L~l~~~~~~~----~~~~~-----~~L~~L~l~~~~ 533 (577)
+|.--.. ....++ ++ +.+++|+.|+|++|.... .++.. ++|++|++++++
T Consensus 253 ~n~i~~~--------~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 253 DCLLSAR--------GAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp TCCCCHH--------HHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred CCCCchh--------hHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 8742110 000011 33 448999999999998554 13221 899999999876
No 110
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.44 E-value=1.5e-14 Score=146.45 Aligned_cols=106 Identities=20% Similarity=0.189 Sum_probs=59.8
Q ss_pred CCccEEeCccCCCCCcch----hhcCCCC-cccEEEccCCCCCccc-chhhhcC-----cCCCEEeccCCCCCccccc--
Q 037229 298 PQLLTLFLNINPLSMIGG----DLFQFKP-CLKVLNLSNSPCLEKL-PSRISRL-----VSLQHLDLSSSGILELPKE-- 364 (577)
Q Consensus 298 ~~Lr~L~l~~~~~~~~~~----~~~~~l~-~L~~L~L~~~~~l~~l-p~~i~~l-----~~L~~L~L~~~~i~~lp~~-- 364 (577)
++|++|++++|.+...+. ..+..++ +|++|+|++| .+... +..+..+ ++|++|+|++|.+...+..
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 346666666666655554 4455565 6666666666 66544 3344443 6666666666666543322
Q ss_pred ---ccCC-CcCcEecccccccccccchHHh----cC-CCCCcEEEeeeec
Q 037229 365 ---LGFL-GNLACLNLENTSSHGTITRQLR----SN-FSKPQVLRMFRFY 405 (577)
Q Consensus 365 ---i~~L-~~L~~L~l~~~~~l~~lp~~~i----~~-l~~L~~L~l~~~~ 405 (577)
+..+ ++|++|++++| .+...+...+ .. .++|++|++++|.
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 149 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGND 149 (362)
T ss_dssp HHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTSC
T ss_pred HHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCCc
Confidence 3333 56666666666 4555443222 22 2466666666665
No 111
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.42 E-value=4.9e-13 Score=135.28 Aligned_cols=123 Identities=22% Similarity=0.161 Sum_probs=55.6
Q ss_pred EEEEecCCCCCCcCCCCCCCccEEeCccCCCCCcchhhcC-CCCcccEEEccCCCCCcccch-hhhcCcCCCEEeccCCC
Q 037229 280 RVSLKENKIGDLWETPTSPQLLTLFLNINPLSMIGGDLFQ-FKPCLKVLNLSNSPCLEKLPS-RISRLVSLQHLDLSSSG 357 (577)
Q Consensus 280 ~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~-~l~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~L~~~~ 357 (577)
.+.+.++.+..+|.. -...++.|++++|.+..++...|. .+++|++|+|++| .+..+++ .+..+++|++|+|++|.
T Consensus 22 ~l~c~~~~l~~iP~~-~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 22 ILSCSKQQLPNVPQS-LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp EEECCSSCCSSCCSS-CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcCccCcc-CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCCc
Confidence 344444444444432 122344455555544444444343 4455555555555 4444432 34444555555555554
Q ss_pred CCccccc-ccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeec
Q 037229 358 ILELPKE-LGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFY 405 (577)
Q Consensus 358 i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 405 (577)
++.+|.. +..+.+|++|+|++| .+..++...+.++++|++|++++|.
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~N~ 147 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQNQ 147 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCcCCHHHhCCCcCCCEEECCCC-cccEECHHHhCCcccCCEEECCCCc
Confidence 4444432 444455555555544 3444432224444555555554443
No 112
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.41 E-value=2.4e-14 Score=150.05 Aligned_cols=125 Identities=23% Similarity=0.197 Sum_probs=64.7
Q ss_pred eeEEEEecCCCCC-----CcC-CCCCCCccEEeCccCCCCCc-chhhcCCCC----cccEEEccCCCCCc-----ccchh
Q 037229 278 TRRVSLKENKIGD-----LWE-TPTSPQLLTLFLNINPLSMI-GGDLFQFKP----CLKVLNLSNSPCLE-----KLPSR 341 (577)
Q Consensus 278 ~r~l~l~~~~~~~-----l~~-~~~~~~Lr~L~l~~~~~~~~-~~~~~~~l~----~L~~L~L~~~~~l~-----~lp~~ 341 (577)
++.+.+.++.+.. ++. ...+++|++|++++|.+... +..++..++ +|++|++++| .+. .+|..
T Consensus 30 L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~ 108 (461)
T 1z7x_W 30 CQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC-CLTGAGCGVLSST 108 (461)
T ss_dssp CSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTS-CCBGGGHHHHHHH
T ss_pred ccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCC-CCCHHHHHHHHHH
Confidence 5666666665542 111 14456666666666654332 222223333 4666666666 555 34555
Q ss_pred hhcCcCCCEEeccCCCCCcc-cc----c-ccCCCcCcEecccccccccc-----cchHHhcCCCCCcEEEeeeec
Q 037229 342 ISRLVSLQHLDLSSSGILEL-PK----E-LGFLGNLACLNLENTSSHGT-----ITRQLRSNFSKPQVLRMFRFY 405 (577)
Q Consensus 342 i~~l~~L~~L~L~~~~i~~l-p~----~-i~~L~~L~~L~l~~~~~l~~-----lp~~~i~~l~~L~~L~l~~~~ 405 (577)
+..+++|++|++++|.+... +. . ...+++|++|++++| .+.. ++.. +..+++|++|++++|.
T Consensus 109 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~ 181 (461)
T 1z7x_W 109 LRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASV-LRAKPDFKELTVSNND 181 (461)
T ss_dssp TTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHH-HHHCTTCCEEECCSSB
T ss_pred HccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHHHHHHH-HhhCCCCCEEECcCCC
Confidence 66666666666666655421 11 1 112345666666666 3333 2222 4555666666666654
No 113
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.40 E-value=2e-14 Score=150.77 Aligned_cols=154 Identities=19% Similarity=0.189 Sum_probs=109.6
Q ss_pred eeEEEEecCCCCCCcC---CCCCCCccEEeCccCCCCC-----cchhhcCCCCcccEEEccCCCCCccc-chhh-hcCc-
Q 037229 278 TRRVSLKENKIGDLWE---TPTSPQLLTLFLNINPLSM-----IGGDLFQFKPCLKVLNLSNSPCLEKL-PSRI-SRLV- 346 (577)
Q Consensus 278 ~r~l~l~~~~~~~l~~---~~~~~~Lr~L~l~~~~~~~-----~~~~~~~~l~~L~~L~L~~~~~l~~l-p~~i-~~l~- 346 (577)
++++.+.++.+...+. ...+++|++|++++|.+.. ++. .+..+++|++|+++++ .+... +..+ ..+.
T Consensus 5 l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 5 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISS-ALRVNPALAELNLRSN-ELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHH-HHHTCTTCCEEECTTC-CCHHHHHHHHHHTTCS
T ss_pred ceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHH-HHHhCCCcCEEeCCCC-cCChHHHHHHHHHHhh
Confidence 6788888887754332 2578899999999998663 333 3778899999999999 88753 3333 3455
Q ss_pred ---CCCEEeccCCCCC-----cccccccCCCcCcEecccccccccccc-h----HHhcCCCCCcEEEeeeecCccccccc
Q 037229 347 ---SLQHLDLSSSGIL-----ELPKELGFLGNLACLNLENTSSHGTIT-R----QLRSNFSKPQVLRMFRFYGKAQYMKA 413 (577)
Q Consensus 347 ---~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~l~~~~~l~~lp-~----~~i~~l~~L~~L~l~~~~~~~~~~~~ 413 (577)
+|++|++++|.+. .+|..+..+++|++|++++| .+.... . ......++|++|++.+|.....
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~---- 157 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA---- 157 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG----
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCC-cCchHHHHHHHHHHhcCCCcceEEECCCCCCCHH----
Confidence 6999999999987 56888999999999999999 454322 1 2122367899999999861110
Q ss_pred ccCCccCcccccccccCCccCceeEEEecCc
Q 037229 414 DSLPFGGSEFLVEQLCCLKHLNVFSITLKSS 444 (577)
Q Consensus 414 ~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 444 (577)
........+..+++|+.|+++.+..
T Consensus 158 ------~~~~l~~~l~~~~~L~~L~L~~n~i 182 (461)
T 1z7x_W 158 ------SCEPLASVLRAKPDFKELTVSNNDI 182 (461)
T ss_dssp ------GHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred ------HHHHHHHHHhhCCCCCEEECcCCCc
Confidence 0112345566778899999886653
No 114
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.40 E-value=4.4e-13 Score=119.79 Aligned_cols=124 Identities=22% Similarity=0.166 Sum_probs=69.0
Q ss_pred eeEEEEecCCCC--CCcCC-CCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcc-cchhhhcCcCCCEEec
Q 037229 278 TRRVSLKENKIG--DLWET-PTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEK-LPSRISRLVSLQHLDL 353 (577)
Q Consensus 278 ~r~l~l~~~~~~--~l~~~-~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~-lp~~i~~l~~L~~L~L 353 (577)
++.+.+.++.+. .++.. ..+++|++|++.+|.+..+ ..+..+++|++|++++| .+.. +|..++.+++|++|++
T Consensus 26 L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 26 VRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSEN-RIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp CSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESC-CCCSCCCHHHHHCTTCCEEEC
T ss_pred CCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCC-cCchHHHHHHhhCCCCCEEec
Confidence 555666555554 44443 4555566666666655544 22555566666666666 5554 4545555666666666
Q ss_pred cCCCCCccc--ccccCCCcCcEecccccccccccch---HHhcCCCCCcEEEeeeec
Q 037229 354 SSSGILELP--KELGFLGNLACLNLENTSSHGTITR---QLRSNFSKPQVLRMFRFY 405 (577)
Q Consensus 354 ~~~~i~~lp--~~i~~L~~L~~L~l~~~~~l~~lp~---~~i~~l~~L~~L~l~~~~ 405 (577)
++|.++.+| ..+..+++|++|++++| .+..+|. ..+..+++|++|++.+|.
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 666555554 45555666666666665 4555544 225556666666655554
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.39 E-value=1.2e-12 Score=122.35 Aligned_cols=126 Identities=20% Similarity=0.170 Sum_probs=113.1
Q ss_pred eeEEEEecCCCCCCcC---CCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccch-hhhcCcCCCEEec
Q 037229 278 TRRVSLKENKIGDLWE---TPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPS-RISRLVSLQHLDL 353 (577)
Q Consensus 278 ~r~l~l~~~~~~~l~~---~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~L 353 (577)
++.+.+.++.+..++. ...+++|++|++.+|.+..+++..|..+++|++|+|++| .+..+|. .++.+++|++|+|
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN-RLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCGGGGTTCSSCCEEEC
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC-ccCccCHhHhcCCcCCCEEEC
Confidence 7899999999988743 478999999999999999999877999999999999999 9998865 4899999999999
Q ss_pred cCCCCCcc-cccccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeec
Q 037229 354 SSSGILEL-PKELGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFY 405 (577)
Q Consensus 354 ~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 405 (577)
++|.+..+ |..+..+++|++|++++| .+..++...+..+++|++|++.+|.
T Consensus 113 s~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 113 RSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp TTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CCCcCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcC
Confidence 99999988 567999999999999999 7888854449999999999999987
No 116
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.38 E-value=8.8e-13 Score=115.24 Aligned_cols=121 Identities=22% Similarity=0.188 Sum_probs=69.5
Q ss_pred eeEEEEecCCCC--CCcCC-CCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcc-cchhhhcCcCCCEEec
Q 037229 278 TRRVSLKENKIG--DLWET-PTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEK-LPSRISRLVSLQHLDL 353 (577)
Q Consensus 278 ~r~l~l~~~~~~--~l~~~-~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~-lp~~i~~l~~L~~L~L 353 (577)
++++.+.++.+. .++.. ..+++|++|++.+|.+..+ ..+..+++|++|++++| .+.. +|..++.+++|++|++
T Consensus 19 l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 19 VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDN-RVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp CSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSS-CCCSCTHHHHHHCTTCCEEEC
T ss_pred CeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCC-cccchHHHHhhhCCCCCEEEC
Confidence 556666665555 44433 4556666666666665555 22556666666666666 5555 5555555666666666
Q ss_pred cCCCCCccc--ccccCCCcCcEecccccccccccch---HHhcCCCCCcEEEee
Q 037229 354 SSSGILELP--KELGFLGNLACLNLENTSSHGTITR---QLRSNFSKPQVLRMF 402 (577)
Q Consensus 354 ~~~~i~~lp--~~i~~L~~L~~L~l~~~~~l~~lp~---~~i~~l~~L~~L~l~ 402 (577)
++|.+..+| ..++.+++|++|++++| .+..+|. ..++.+++|++|+++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 666666544 45566666666666666 4555554 235556666666543
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.38 E-value=1.2e-12 Score=117.01 Aligned_cols=136 Identities=21% Similarity=0.164 Sum_probs=114.7
Q ss_pred CCCCccEEeCccCCCC--CcchhhcCCCCcccEEEccCCCCCcccchhhhcCcCCCEEeccCCCCCc-ccccccCCCcCc
Q 037229 296 TSPQLLTLFLNINPLS--MIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSSSGILE-LPKELGFLGNLA 372 (577)
Q Consensus 296 ~~~~Lr~L~l~~~~~~--~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~-lp~~i~~L~~L~ 372 (577)
..++|++|++.+|.+. .+|.. +..+++|++|++++| .++.+ ..++.+++|++|++++|.+.. +|..++++++|+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINV-GLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESS-CCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred CcccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCC-CCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 4588999999999987 77765 789999999999999 89988 689999999999999999998 777778899999
Q ss_pred Eecccccccccccch-HHhcCCCCCcEEEeeeecCcccccccccCCccCccccc---ccccCCccCceeEEEecCccccc
Q 037229 373 CLNLENTSSHGTITR-QLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLV---EQLCCLKHLNVFSITLKSSYALQ 448 (577)
Q Consensus 373 ~L~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~L~~L~~L~l~~~~~~~l~ 448 (577)
+|++++| .+..+|. ..+.++++|++|++.+|.. ..... ..+..+++|+.|+++.+.....+
T Consensus 99 ~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l--------------~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 99 HLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCEV--------------TNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp EEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSGG--------------GTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred EEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCcC--------------cchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 9999999 7888772 2389999999999999971 21122 36889999999999988776554
Q ss_pred C
Q 037229 449 K 449 (577)
Q Consensus 449 ~ 449 (577)
.
T Consensus 164 ~ 164 (168)
T 2ell_A 164 D 164 (168)
T ss_dssp S
T ss_pred c
Confidence 3
No 118
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.36 E-value=2e-13 Score=147.84 Aligned_cols=35 Identities=11% Similarity=-0.005 Sum_probs=17.4
Q ss_pred CcccEEecCCccc-ccc--cccCCCCCCCcceEeeecC
Q 037229 522 DRLRKVSGGYKKI-LKR--IYPDVLPLKNLKGITVSSC 556 (577)
Q Consensus 522 ~~L~~L~l~~~~~-l~~--l~~~~~~~~~L~~L~i~~c 556 (577)
++|++|++++|.. +.. +..-...+++|++|++++|
T Consensus 436 ~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n 473 (592)
T 3ogk_B 436 KKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV 473 (592)
T ss_dssp TTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC
T ss_pred CCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC
Confidence 6666666655543 111 1111123566777777654
No 119
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.36 E-value=2.8e-12 Score=129.65 Aligned_cols=150 Identities=23% Similarity=0.252 Sum_probs=116.0
Q ss_pred eeEEEEecCCCCCCcCC--C-CCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccch-hhhcCcCCCEEec
Q 037229 278 TRRVSLKENKIGDLWET--P-TSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPS-RISRLVSLQHLDL 353 (577)
Q Consensus 278 ~r~l~l~~~~~~~l~~~--~-~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~L 353 (577)
++.+.++++.+..++.. . .+++|++|++++|.+..+++..|..+++|++|+|++| .++.+|. .+..+++|++|+|
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L 119 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALEVLLL 119 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEEC
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC-cCCcCCHHHhCCCcCCCEEEC
Confidence 78888888888877664 3 7888999999998888888777888899999999999 8888765 5788899999999
Q ss_pred cCCCCCcc-cccccCCCcCcEecccccccccccchHHh---cCCCCCcEEEeeeecCcccccccccCCccCccccccccc
Q 037229 354 SSSGILEL-PKELGFLGNLACLNLENTSSHGTITRQLR---SNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLC 429 (577)
Q Consensus 354 ~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lp~~~i---~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 429 (577)
++|.+..+ |..+..+++|++|+|++| .+..+|...+ ..+++|++|++.+|. ........+.
T Consensus 120 ~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~--------------l~~l~~~~~~ 184 (361)
T 2xot_A 120 YNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNK--------------LKKLPLTDLQ 184 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSC--------------CCCCCHHHHH
T ss_pred CCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCC--------------CCccCHHHhh
Confidence 99988877 456888899999999988 7888887644 578899999998886 2222334455
Q ss_pred CCcc--CceeEEEecC
Q 037229 430 CLKH--LNVFSITLKS 443 (577)
Q Consensus 430 ~L~~--L~~L~l~~~~ 443 (577)
.++. |+.|++..+.
T Consensus 185 ~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 185 KLPAWVKNGLYLHNNP 200 (361)
T ss_dssp HSCHHHHTTEECCSSC
T ss_pred hccHhhcceEEecCCC
Confidence 6655 3677777654
No 120
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.36 E-value=5.4e-13 Score=116.58 Aligned_cols=126 Identities=18% Similarity=0.169 Sum_probs=100.7
Q ss_pred CCCCccEEeCccCCCC--CcchhhcCCCCcccEEEccCCCCCcccchhhhcCcCCCEEeccCCCCCc-ccccccCCCcCc
Q 037229 296 TSPQLLTLFLNINPLS--MIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSSSGILE-LPKELGFLGNLA 372 (577)
Q Consensus 296 ~~~~Lr~L~l~~~~~~--~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~-lp~~i~~L~~L~ 372 (577)
..++|+.|++.+|.+. .+|.. +..+++|++|++++| .++.+ ..++.+++|++|++++|.+.. +|..++.+++|+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGL-TDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSC-CTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred CCccCeEEEccCCcCChhHHHHH-HhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 3578999999999877 67664 788999999999999 88888 688899999999999999987 777777899999
Q ss_pred Eecccccccccccc--hHHhcCCCCCcEEEeeeecCcccccccccCCccCccccc---ccccCCccCceeEEE
Q 037229 373 CLNLENTSSHGTIT--RQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLV---EQLCCLKHLNVFSIT 440 (577)
Q Consensus 373 ~L~l~~~~~l~~lp--~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~L~~L~~L~l~ 440 (577)
+|++++| .+..+| .. ++.+++|++|++.+|.. ..... ..+..+++|+.|+++
T Consensus 92 ~L~ls~N-~i~~~~~~~~-~~~l~~L~~L~l~~N~l--------------~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 92 HLNLSGN-KIKDLSTIEP-LKKLENLKSLDLFNCEV--------------TNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EEECTTS-CCCSHHHHGG-GGGCTTCCEEECTTCGG--------------GGSTTHHHHHHHHCTTCCEETTB
T ss_pred EEECCCC-cCCChHHHHH-HhhCCCCCEEeCcCCcc--------------cchHHHHHHHHHHCCCcccccCC
Confidence 9999999 677765 44 88999999999998861 11111 356677777776643
No 121
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.36 E-value=2.5e-12 Score=115.74 Aligned_cols=127 Identities=18% Similarity=0.190 Sum_probs=75.1
Q ss_pred ecCeeEEEEecCCCCCCcCCCCCC-CccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchhh-hcCcCCCEEe
Q 037229 275 QEGTRRVSLKENKIGDLWETPTSP-QLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRI-SRLVSLQHLD 352 (577)
Q Consensus 275 ~~~~r~l~l~~~~~~~l~~~~~~~-~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i-~~l~~L~~L~ 352 (577)
...++.+.+.++.+..++....+. +|++|++++|.+..++ .+..+++|++|++++| .+..+|+.+ +.+++|++|+
T Consensus 18 ~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~--~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC--CCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCEEE
T ss_pred cCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCccc--ccccCCCCCEEECCCC-cccccCcchhhcCCCCCEEE
Confidence 334566666666666555444443 6666666666655552 2566666666666666 666665433 5666666666
Q ss_pred ccCCCCCcccc--cccCCCcCcEecccccccccccchH---HhcCCCCCcEEEeeeec
Q 037229 353 LSSSGILELPK--ELGFLGNLACLNLENTSSHGTITRQ---LRSNFSKPQVLRMFRFY 405 (577)
Q Consensus 353 L~~~~i~~lp~--~i~~L~~L~~L~l~~~~~l~~lp~~---~i~~l~~L~~L~l~~~~ 405 (577)
+++|.+..+|. .++.+++|++|++++| .+..+|.. .++.+++|++|++..+.
T Consensus 95 L~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 95 LTNNSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CCSCCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCCCcCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 66666666665 5666666666666666 45555542 35566666666666554
No 122
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.34 E-value=5.1e-13 Score=135.22 Aligned_cols=131 Identities=16% Similarity=0.086 Sum_probs=94.2
Q ss_pred EeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccc-----hhhhcCc-CCCEEeccCCCCCcc-cccccCC-----Cc
Q 037229 303 LFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLP-----SRISRLV-SLQHLDLSSSGILEL-PKELGFL-----GN 370 (577)
Q Consensus 303 L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp-----~~i~~l~-~L~~L~L~~~~i~~l-p~~i~~L-----~~ 370 (577)
+.+..+.+....+.++...++|++|++++| .+...+ ..+..++ +|++|+|++|.+... +..+..+ ++
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 567777777777776777777999999999 898775 5678888 999999999998865 4456554 89
Q ss_pred CcEecccccccccccchHHh----cCC-CCCcEEEeeeecCcccccccccCCccCcccccccccCC-ccCceeEEEecCc
Q 037229 371 LACLNLENTSSHGTITRQLR----SNF-SKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCL-KHLNVFSITLKSS 444 (577)
Q Consensus 371 L~~L~l~~~~~l~~lp~~~i----~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L-~~L~~L~l~~~~~ 444 (577)
|++|++++| .+...+...+ ..+ ++|++|++++|..... ........+..+ ++|+.|+++.+..
T Consensus 82 L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~----------~~~~l~~~l~~~~~~L~~L~Ls~N~l 150 (362)
T 3goz_A 82 VTSLNLSGN-FLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK----------SSSEFKQAFSNLPASITSLNLRGNDL 150 (362)
T ss_dssp CCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS----------CHHHHHHHHTTSCTTCCEEECTTSCG
T ss_pred ccEEECcCC-cCChHHHHHHHHHHHhCCCCccEEECcCCcCCcH----------HHHHHHHHHHhCCCceeEEEccCCcC
Confidence 999999999 6665554323 344 8999999999972110 001112224443 5888998886654
Q ss_pred c
Q 037229 445 Y 445 (577)
Q Consensus 445 ~ 445 (577)
.
T Consensus 151 ~ 151 (362)
T 3goz_A 151 G 151 (362)
T ss_dssp G
T ss_pred C
Confidence 3
No 123
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.34 E-value=1e-12 Score=118.36 Aligned_cols=133 Identities=16% Similarity=0.097 Sum_probs=106.7
Q ss_pred cCCCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchhhhcCcCCCEEeccCCCCCcccccc-cCCCc
Q 037229 292 WETPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSSSGILELPKEL-GFLGN 370 (577)
Q Consensus 292 ~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i-~~L~~ 370 (577)
+....+.+|+.|++.+|.+..++. +....++|++|++++| .++.+ +.++.+++|++|++++|.+..+|..+ +.+++
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred HhcCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCC-CCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 344678899999999999888754 2333449999999999 99888 58889999999999999999998775 88999
Q ss_pred CcEecccccccccccch--HHhcCCCCCcEEEeeeecCcccccccccCCccCcccccc----cccCCccCceeEEEecCc
Q 037229 371 LACLNLENTSSHGTITR--QLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVE----QLCCLKHLNVFSITLKSS 444 (577)
Q Consensus 371 L~~L~l~~~~~l~~lp~--~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~L~~L~~L~l~~~~~ 444 (577)
|++|++++| .+..+|. . ++.+++|++|++.+|. ....+. .+..+++|+.|+++.+..
T Consensus 90 L~~L~L~~N-~i~~~~~~~~-l~~l~~L~~L~l~~N~---------------i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 90 LTELILTNN-SLVELGDLDP-LASLKSLTYLCILRNP---------------VTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCEEECCSC-CCCCGGGGGG-GGGCTTCCEEECCSSG---------------GGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCEEECCCC-cCCcchhhHh-hhcCCCCCEEEecCCC---------------CCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 999999999 7888886 4 8899999999999987 112222 367788888888876543
No 124
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.33 E-value=6.2e-13 Score=143.97 Aligned_cols=59 Identities=19% Similarity=0.079 Sum_probs=35.7
Q ss_pred CCCcceEeeccCCCccee----cCC-CcccEEecCCcccccc--cccCCCCCCCcceEeeecCCCCCc
Q 037229 501 APNFRKIDINQSSHMEEI----ICI-DRLRKVSGGYKKILKR--IYPDVLPLKNLKGITVSSCPNLKR 561 (577)
Q Consensus 501 l~~L~~L~l~~~~~~~~~----~~~-~~L~~L~l~~~~~l~~--l~~~~~~~~~L~~L~i~~c~~L~~ 561 (577)
+++|+.|+|++|...... ... ++|++|+|++|+ +.. ++.....+++|++|++++|. +..
T Consensus 462 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~ 527 (592)
T 3ogk_B 462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASM 527 (592)
T ss_dssp CTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCT
T ss_pred CccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCH
Confidence 667777777766532211 111 778888888877 432 22223357888888888875 443
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.33 E-value=7.8e-12 Score=114.28 Aligned_cols=122 Identities=18% Similarity=0.191 Sum_probs=82.8
Q ss_pred EEEEecCCCCCCcCCCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccc-hhhhcCcCCCEEeccCCCC
Q 037229 280 RVSLKENKIGDLWETPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLP-SRISRLVSLQHLDLSSSGI 358 (577)
Q Consensus 280 ~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~L~~~~i 358 (577)
.+.+.++.+..+|... .++|++|++.+|.+..+|.. |..+++|++|+|++| .++.++ ..|..+++|++|+|++|.+
T Consensus 14 ~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i~~ip~~-~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGI-PRDVTELYLDGNQFTLVPKE-LSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp EEECTTSCCSSCCSCC-CTTCCEEECCSSCCCSCCGG-GGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEcCCCCCCcCCCCC-CCCCCEEECCCCcCchhHHH-hhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCCcc
Confidence 4556666666666432 35677777777777766643 677777777777777 777664 3467777777777777777
Q ss_pred Ccccc-cccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeec
Q 037229 359 LELPK-ELGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFY 405 (577)
Q Consensus 359 ~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 405 (577)
+.+|. .+..+++|++|++++| .+..+|.+.+..+++|++|++.+|.
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CEeCHHHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCC
Confidence 76665 3677777777777777 6666766556677777777777665
No 126
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.32 E-value=9.4e-12 Score=112.11 Aligned_cols=124 Identities=18% Similarity=0.218 Sum_probs=105.2
Q ss_pred eEEEEecCCCCCCcCCCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchh-hhcCcCCCEEeccCCC
Q 037229 279 RRVSLKENKIGDLWETPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSR-ISRLVSLQHLDLSSSG 357 (577)
Q Consensus 279 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~L~~~~ 357 (577)
+.+.+.++.+..+|.. -.++|++|++.+|.+..++...|..+++|++|+++++ .++.+|.. ++.+++|++|++++|.
T Consensus 10 ~~l~~~~~~l~~~p~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTG-IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TEEECCSSCCSSCCTT-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCCccCCCC-CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCCC
Confidence 4667777777777743 3478999999999988888887889999999999999 89888754 6889999999999999
Q ss_pred CCccccc-ccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeec
Q 037229 358 ILELPKE-LGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFY 405 (577)
Q Consensus 358 i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 405 (577)
++.+|.. +..+++|++|++++| .+..+|...+..+++|++|++.+|.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCC
Confidence 9988876 688999999999999 7888888756889999999998886
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.32 E-value=3.9e-12 Score=116.23 Aligned_cols=124 Identities=22% Similarity=0.224 Sum_probs=69.8
Q ss_pred eEEEEecCCCCCCcCCCCCCCccEEeCccCCCCCcchh-hcCCCCcccEEEccCCCCCccc-chhhhcCcCCCEEeccCC
Q 037229 279 RRVSLKENKIGDLWETPTSPQLLTLFLNINPLSMIGGD-LFQFKPCLKVLNLSNSPCLEKL-PSRISRLVSLQHLDLSSS 356 (577)
Q Consensus 279 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~-~~~~l~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~L~~~ 356 (577)
+.+.+.++.+..+|... ..+|++|++.+|.+..++.. +|..+++|++|+|++| .++.+ |..++.+++|++|+|++|
T Consensus 11 ~~l~~s~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCC-CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCCC
Confidence 34555555555555432 22566666666665555542 3556666666666666 55555 445666666666666666
Q ss_pred CCCccccc-ccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeec
Q 037229 357 GILELPKE-LGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFY 405 (577)
Q Consensus 357 ~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 405 (577)
.++.+|.. +..+++|++|++++| .+..++...+..+++|++|++.+|.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTCC
T ss_pred cCCccCHHHhcCCCCCCEEECCCC-cCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 66655443 556666666666666 4444432225566666666666554
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.31 E-value=7.8e-12 Score=114.28 Aligned_cols=125 Identities=16% Similarity=0.121 Sum_probs=105.6
Q ss_pred ccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchhhhcCcCCCEEeccCCCCCcccc-cccCCCcCcEecccc
Q 037229 300 LLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSSSGILELPK-ELGFLGNLACLNLEN 378 (577)
Q Consensus 300 Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~ 378 (577)
-+++++.++.+..+|..+ .+.|++|+++++ .++.+|..+..+++|++|+|++|.++.++. .|.++++|++|++++
T Consensus 12 ~~~l~~~~~~l~~ip~~~---~~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 12 DTVVRCSNKGLKVLPKGI---PRDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TTEEECTTSCCSSCCSCC---CTTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCCCCCcCCCCC---CCCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 367899999999999864 368999999999 999999999999999999999999998876 489999999999999
Q ss_pred cccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCccCceeEEEecC
Q 037229 379 TSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHLNVFSITLKS 443 (577)
Q Consensus 379 ~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 443 (577)
| .+..+|...+.++++|++|++.+|. ........+..+++|+.|+++.+.
T Consensus 88 N-~l~~i~~~~f~~l~~L~~L~L~~N~--------------l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 88 N-RLRCIPPRTFDGLKSLRLLSLHGND--------------ISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp S-CCCBCCTTTTTTCTTCCEEECCSSC--------------CCBCCTTTTTTCTTCCEEECCSSC
T ss_pred C-ccCEeCHHHhCCCCCCCEEECCCCC--------------CCeeChhhhhcCccccEEEeCCCC
Confidence 9 7888887668999999999999997 222233346778888888887654
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.31 E-value=6.5e-12 Score=114.78 Aligned_cols=127 Identities=17% Similarity=0.153 Sum_probs=110.4
Q ss_pred ccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchh--hhcCcCCCEEeccCCCCCcc-cccccCCCcCcEecc
Q 037229 300 LLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSR--ISRLVSLQHLDLSSSGILEL-PKELGFLGNLACLNL 376 (577)
Q Consensus 300 Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~--i~~l~~L~~L~L~~~~i~~l-p~~i~~L~~L~~L~l 376 (577)
-++++++++.+..+|..++ ..|++|+++++ .+..++.. ++.+++|++|+|++|.++.+ |..+..+++|++|++
T Consensus 10 ~~~l~~s~~~l~~ip~~~~---~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIP---LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TTEEECTTSCCSSCCSCCC---TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCEEEcCCCCcCcCccCCC---CCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence 3789999999999998743 38999999999 99998764 89999999999999999987 667999999999999
Q ss_pred cccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCccCceeEEEecCcc
Q 037229 377 ENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHLNVFSITLKSSY 445 (577)
Q Consensus 377 ~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~ 445 (577)
++| .+..++...+.++++|++|++++|. .....+..+..+++|+.|+++.+...
T Consensus 86 s~N-~l~~~~~~~~~~l~~L~~L~L~~N~--------------l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 86 GEN-KIKEISNKMFLGLHQLKTLNLYDNQ--------------ISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CSC-CCCEECSSSSTTCTTCCEEECCSSC--------------CCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCC-cCCccCHHHhcCCCCCCEEECCCCc--------------CCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 999 7888877658899999999999997 34455678899999999999987654
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.27 E-value=3.6e-12 Score=140.39 Aligned_cols=107 Identities=25% Similarity=0.242 Sum_probs=62.6
Q ss_pred CCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchhhhcCcCCCEEeccCCCCCcccccccCCCcCcEe
Q 037229 295 PTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSSSGILELPKELGFLGNLACL 374 (577)
Q Consensus 295 ~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L 374 (577)
..++.|++|++++|.+..+|..++ .+++|++|+|++| .++.+|..|+.|++|++|+|++|.|+.+|.++++|++|++|
T Consensus 221 ~~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 221 YDDQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYF 298 (727)
T ss_dssp -CCCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEE
T ss_pred ccCCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEE
Confidence 444556666666665555555533 5556666666666 55555655666666666666666666666666666666666
Q ss_pred cccccccccccchHHhcCCCCCcEEEeeeec
Q 037229 375 NLENTSSHGTITRQLRSNFSKPQVLRMFRFY 405 (577)
Q Consensus 375 ~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 405 (577)
+|++| .+..+|.+ +++|++|++|++++|.
T Consensus 299 ~L~~N-~l~~lp~~-~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 299 YFFDN-MVTTLPWE-FGNLCNLQFLGVEGNP 327 (727)
T ss_dssp ECCSS-CCCCCCSS-TTSCTTCCCEECTTSC
T ss_pred ECCCC-CCCccChh-hhcCCCccEEeCCCCc
Confidence 66665 45555555 5566666666665554
No 131
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.26 E-value=1.5e-11 Score=131.36 Aligned_cols=100 Identities=19% Similarity=0.181 Sum_probs=55.0
Q ss_pred ccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchhhhcCcCCCEEeccCCCCCcccccccCCCcCcEeccccc
Q 037229 300 LLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSSSGILELPKELGFLGNLACLNLENT 379 (577)
Q Consensus 300 Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~ 379 (577)
|++|++++|.+..+|. +..+++|++|+|++| .++.+|..++.+++|++|+|++|.++.+| +++++++|++|++++|
T Consensus 443 L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 443 VRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN 518 (567)
T ss_dssp CSEEECTTSCCSSCCC--GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS
T ss_pred ceEEEecCCCCCCCcC--ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCC
Confidence 5555555555555543 455555555555555 55555555555555555555555555555 5555555555555555
Q ss_pred cccccc--chHHhcCCCCCcEEEeeeec
Q 037229 380 SSHGTI--TRQLRSNFSKPQVLRMFRFY 405 (577)
Q Consensus 380 ~~l~~l--p~~~i~~l~~L~~L~l~~~~ 405 (577)
.+..+ |.. ++++++|++|++++|.
T Consensus 519 -~l~~~~~p~~-l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 519 -RLQQSAAIQP-LVSCPRLVLLNLQGNS 544 (567)
T ss_dssp -CCCSSSTTGG-GGGCTTCCEEECTTSG
T ss_pred -CCCCCCCcHH-HhcCCCCCEEEecCCc
Confidence 44444 443 5555555555555554
No 132
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.22 E-value=1.1e-11 Score=136.62 Aligned_cols=100 Identities=26% Similarity=0.323 Sum_probs=60.3
Q ss_pred eeEEEEecCCCCCCcCC-CCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchhhhcCcCCCEEeccCC
Q 037229 278 TRRVSLKENKIGDLWET-PTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSSS 356 (577)
Q Consensus 278 ~r~l~l~~~~~~~l~~~-~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~ 356 (577)
++.|.+.++.+..++.. ..+++|++|++++|.+..+|.. |..+++|++|+|++| .++.+|..++.|++|++|+|++|
T Consensus 226 L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N 303 (727)
T 4b8c_D 226 WHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAE-IKNLSNLRVLDLSHN-RLTSLPAELGSCFQLKYFYFFDN 303 (727)
T ss_dssp CCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGG-GGGGTTCCEEECTTS-CCSSCCSSGGGGTTCSEEECCSS
T ss_pred CcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChh-hhCCCCCCEEeCcCC-cCCccChhhcCCCCCCEEECCCC
Confidence 55666666655555432 4555666666666665555544 455666666666666 56666666666666666666666
Q ss_pred CCCcccccccCCCcCcEeccccc
Q 037229 357 GILELPKELGFLGNLACLNLENT 379 (577)
Q Consensus 357 ~i~~lp~~i~~L~~L~~L~l~~~ 379 (577)
.+..+|.+|++|++|++|+|++|
T Consensus 304 ~l~~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 304 MVTTLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp CCCCCCSSTTSCTTCCCEECTTS
T ss_pred CCCccChhhhcCCCccEEeCCCC
Confidence 66666666666666666666666
No 133
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.22 E-value=2.9e-11 Score=129.16 Aligned_cols=120 Identities=22% Similarity=0.196 Sum_probs=108.8
Q ss_pred eeEEEEecCCCCCCcCCCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchhhhcCcCCCEEeccCCC
Q 037229 278 TRRVSLKENKIGDLWETPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSSSG 357 (577)
Q Consensus 278 ~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~ 357 (577)
++.+.++++.+..+|....+++|++|++++|.+..+|.. +..+++|++|+|++| .++.+| .++.+++|++|+|++|.
T Consensus 443 L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 443 VRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNNR 519 (567)
T ss_dssp CSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGG-GGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSSC
T ss_pred ceEEEecCCCCCCCcCccccccCcEeecCcccccccchh-hhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCCCC
Confidence 789999999999999889999999999999999999886 899999999999999 999999 89999999999999999
Q ss_pred CCcc--cccccCCCcCcEecccccccccccchH---HhcCCCCCcEEEe
Q 037229 358 ILEL--PKELGFLGNLACLNLENTSSHGTITRQ---LRSNFSKPQVLRM 401 (577)
Q Consensus 358 i~~l--p~~i~~L~~L~~L~l~~~~~l~~lp~~---~i~~l~~L~~L~l 401 (577)
++.+ |..++.+++|++|++++| .+..+|.. .+..+++|+.|++
T Consensus 520 l~~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 520 LQQSAAIQPLVSCPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCSSSTTGGGGGCTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCcHHHhcCCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccCC
Confidence 9998 899999999999999999 77777653 2345889998864
No 134
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.20 E-value=6.5e-12 Score=135.98 Aligned_cols=126 Identities=25% Similarity=0.268 Sum_probs=74.4
Q ss_pred eeEEEEecCCCCC-----CcCC-CCCCCccEEeCccCCCCCcch----hhcCCCCcccEEEccCCCCCcccchhhhcCcC
Q 037229 278 TRRVSLKENKIGD-----LWET-PTSPQLLTLFLNINPLSMIGG----DLFQFKPCLKVLNLSNSPCLEKLPSRISRLVS 347 (577)
Q Consensus 278 ~r~l~l~~~~~~~-----l~~~-~~~~~Lr~L~l~~~~~~~~~~----~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~ 347 (577)
++.+.+.++.+.. ++.. ..+++|++|.+.+|. ..+.. .++..+++|++|++++|..+..+|..+..+++
T Consensus 158 L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~ 236 (594)
T 2p1m_B 158 LKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQ 236 (594)
T ss_dssp CCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTT
T ss_pred CCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCc
Confidence 6677776655332 2222 366778888887775 22222 22344678888888877555566666677777
Q ss_pred CCEEeccCCC-------------------------------CCcccccccCCCcCcEeccccccccccc-chHHhcCCCC
Q 037229 348 LQHLDLSSSG-------------------------------ILELPKELGFLGNLACLNLENTSSHGTI-TRQLRSNFSK 395 (577)
Q Consensus 348 L~~L~L~~~~-------------------------------i~~lp~~i~~L~~L~~L~l~~~~~l~~l-p~~~i~~l~~ 395 (577)
|++|++..+. ...+|..+..+++|++|++++|. +... ....+.++++
T Consensus 237 L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~ 315 (594)
T 2p1m_B 237 LEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPK 315 (594)
T ss_dssp CSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTT
T ss_pred ceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCC
Confidence 7777654331 11233333356778888888874 4321 1222557788
Q ss_pred CcEEEeeeec
Q 037229 396 PQVLRMFRFY 405 (577)
Q Consensus 396 L~~L~l~~~~ 405 (577)
|++|++.+|.
T Consensus 316 L~~L~l~~~~ 325 (594)
T 2p1m_B 316 LQRLWVLDYI 325 (594)
T ss_dssp CCEEEEEGGG
T ss_pred cCEEeCcCcc
Confidence 8888887763
No 135
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.19 E-value=6.1e-13 Score=144.04 Aligned_cols=106 Identities=18% Similarity=0.102 Sum_probs=48.2
Q ss_pred CCCCccEEeCccCC-CCCc-chhhcCCCCcccEEEccCCCCCcc-----cchhhhcCcCCCEEeccCCC--CC--ccccc
Q 037229 296 TSPQLLTLFLNINP-LSMI-GGDLFQFKPCLKVLNLSNSPCLEK-----LPSRISRLVSLQHLDLSSSG--IL--ELPKE 364 (577)
Q Consensus 296 ~~~~Lr~L~l~~~~-~~~~-~~~~~~~l~~L~~L~L~~~~~l~~-----lp~~i~~l~~L~~L~L~~~~--i~--~lp~~ 364 (577)
.+++|++|.+.+|. +... ...++..+++|++|++++| .+.. ++.....+++|++|++++|. +. .++.-
T Consensus 128 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l 206 (594)
T 2p1m_B 128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRES-DVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERL 206 (594)
T ss_dssp HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTC-EEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHH
T ss_pred hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCC-ccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHH
Confidence 34556666665552 2210 1122334555666666655 3332 22222244456666665554 11 11111
Q ss_pred ccCCCcCcEecccccccccccchHHhcCCCCCcEEEeee
Q 037229 365 LGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFR 403 (577)
Q Consensus 365 i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~ 403 (577)
+.++++|++|++++|..+..+|.. +.++++|++|.+..
T Consensus 207 ~~~~~~L~~L~L~~~~~~~~l~~~-~~~~~~L~~L~l~~ 244 (594)
T 2p1m_B 207 VTRCPNLKSLKLNRAVPLEKLATL-LQRAPQLEELGTGG 244 (594)
T ss_dssp HHHCTTCCEEECCTTSCHHHHHHH-HHHCTTCSEEECSB
T ss_pred HHhCCCCcEEecCCCCcHHHHHHH-HhcCCcceEccccc
Confidence 233455566665555444444443 45555555555443
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.17 E-value=1.3e-10 Score=104.61 Aligned_cols=126 Identities=17% Similarity=0.173 Sum_probs=104.1
Q ss_pred CccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccch-hhhcCcCCCEEeccCCCCCccccc-ccCCCcCcEecc
Q 037229 299 QLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPS-RISRLVSLQHLDLSSSGILELPKE-LGFLGNLACLNL 376 (577)
Q Consensus 299 ~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~l 376 (577)
..+.+.+.++.+..+|..+ .++|++|+++++ .+..+|. .++.+++|++|++++|.+..+|.. ++.+++|++|++
T Consensus 8 ~~~~l~~~~~~l~~~p~~~---~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTGI---PSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp ETTEEECCSSCCSSCCTTC---CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEecCCCCccCCCCC---CCCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEEC
Confidence 3578899999988888763 368999999999 8998876 468999999999999999998876 689999999999
Q ss_pred cccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCccCceeEEEecC
Q 037229 377 ENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHLNVFSITLKS 443 (577)
Q Consensus 377 ~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 443 (577)
++| .+..+|...+.++++|++|++.+|. ........+..+++|+.|+++.+.
T Consensus 84 ~~N-~l~~~~~~~~~~l~~L~~L~l~~N~--------------l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 84 HEN-KLQSLPNGVFDKLTQLKELALDTNQ--------------LKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CSS-CCCCCCTTTTTTCTTCCEEECCSSC--------------CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCC-CccccCHHHhhCCcccCEEECcCCc--------------ceEeCHHHhcCCcccCEEEecCCC
Confidence 999 7888887657899999999999987 222222335778889999888664
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.14 E-value=2e-12 Score=118.80 Aligned_cols=106 Identities=20% Similarity=0.144 Sum_probs=56.0
Q ss_pred CCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchhhhcCcCCCEEeccCCCCCcccccccCCCcCcEe
Q 037229 295 PTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSSSGILELPKELGFLGNLACL 374 (577)
Q Consensus 295 ~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L 374 (577)
..+++|++|++++|.+..+| . +..+++|++|++++| .+..+|..++.+++|++|++++|.+..+| .++.+++|++|
T Consensus 45 ~~l~~L~~L~ls~n~l~~l~-~-~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L 120 (198)
T 1ds9_A 45 STLKACKHLALSTNNIEKIS-S-LSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVL 120 (198)
T ss_dssp HHTTTCSEEECSEEEESCCC-C-HHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEE
T ss_pred hcCCCCCEEECCCCCCcccc-c-cccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEE
Confidence 44555555555555555544 2 455555555555555 55555555555555555555555555554 35555555555
Q ss_pred cccccccccccch-HHhcCCCCCcEEEeeeec
Q 037229 375 NLENTSSHGTITR-QLRSNFSKPQVLRMFRFY 405 (577)
Q Consensus 375 ~l~~~~~l~~lp~-~~i~~l~~L~~L~l~~~~ 405 (577)
++++| .+..+|. ..+.++++|++|++.+|.
T Consensus 121 ~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 121 YMSNN-KITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp EESEE-ECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred ECCCC-cCCchhHHHHHhcCCCCCEEEecCCc
Confidence 55555 4444443 124555555555555554
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.14 E-value=1.4e-10 Score=103.93 Aligned_cols=101 Identities=21% Similarity=0.246 Sum_probs=83.2
Q ss_pred ccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCccc-chhhhcCcCCCEEeccCCCCCccccc-ccCCCcCcEeccc
Q 037229 300 LLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKL-PSRISRLVSLQHLDLSSSGILELPKE-LGFLGNLACLNLE 377 (577)
Q Consensus 300 Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~l~ 377 (577)
-+.+++.++.+..+|..+ ..+|++|+|+++ .+..+ |..++.+++|++|+|++|+++.+|.. +.++++|++|+++
T Consensus 14 ~~~l~~~~n~l~~iP~~~---~~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGI---PTDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSSCCSSCCSCC---CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCCCCCccCCCc---CCCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 367888888888888763 378888999998 88877 55788888999999999888888876 5788899999998
Q ss_pred ccccccccchHHhcCCCCCcEEEeeeec
Q 037229 378 NTSSHGTITRQLRSNFSKPQVLRMFRFY 405 (577)
Q Consensus 378 ~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 405 (577)
+| .+..+|.+.+.++++|++|++.+|.
T Consensus 90 ~N-~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 90 DN-HLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp SS-CCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred CC-ccceeCHHHhccccCCCEEEeCCCC
Confidence 88 7888887667888899999988886
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.12 E-value=1.7e-10 Score=102.91 Aligned_cols=102 Identities=23% Similarity=0.269 Sum_probs=85.3
Q ss_pred CccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCccc-chhhhcCcCCCEEeccCCCCCccccc-ccCCCcCcEecc
Q 037229 299 QLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKL-PSRISRLVSLQHLDLSSSGILELPKE-LGFLGNLACLNL 376 (577)
Q Consensus 299 ~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~l 376 (577)
..++++++++.+..+|..+ .+.|++|+|++| .++.+ |..++.+++|++|+|++|.++.+|.. +..+++|++|++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI---PTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC---CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEeCCCCcCccCccC---CCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence 3578888888888888763 378889999999 88888 55688899999999999999888876 578899999999
Q ss_pred cccccccccchHHhcCCCCCcEEEeeeec
Q 037229 377 ENTSSHGTITRQLRSNFSKPQVLRMFRFY 405 (577)
Q Consensus 377 ~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 405 (577)
++| .+..+|.+.+.++++|++|++.+|.
T Consensus 86 ~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 86 NDN-QLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCC-ccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 998 7888887658889999999998886
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.10 E-value=3.1e-10 Score=101.69 Aligned_cols=106 Identities=20% Similarity=0.309 Sum_probs=93.7
Q ss_pred eEEEEecCCCCCCcCCCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchh-hhcCcCCCEEeccCCC
Q 037229 279 RRVSLKENKIGDLWETPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSR-ISRLVSLQHLDLSSSG 357 (577)
Q Consensus 279 r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~L~~~~ 357 (577)
+.+.+.++.+..+|... .++|++|++++|.+..+++..|..+++|++|+|++| .++.+|.. +..+++|++|+|++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI-PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCc-CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCCc
Confidence 56788888888888754 389999999999999998877999999999999999 99999876 5899999999999999
Q ss_pred CCccccc-ccCCCcCcEecccccccccccch
Q 037229 358 ILELPKE-LGFLGNLACLNLENTSSHGTITR 387 (577)
Q Consensus 358 i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~ 387 (577)
++.+|.. +..+++|++|++++| .+...+.
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N-~~~c~~~ 122 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNN-PWDCECR 122 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSS-CBCTTBG
T ss_pred cceeCHHHhccccCCCEEEeCCC-Ccccccc
Confidence 9999987 899999999999999 5555554
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.03 E-value=1.2e-09 Score=97.49 Aligned_cols=101 Identities=21% Similarity=0.296 Sum_probs=90.5
Q ss_pred eeEEEEecCCCCCCcCCCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchh-hhcCcCCCEEeccCC
Q 037229 278 TRRVSLKENKIGDLWETPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSR-ISRLVSLQHLDLSSS 356 (577)
Q Consensus 278 ~r~l~l~~~~~~~l~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~-i~~l~~L~~L~L~~~ 356 (577)
.+.+.+.++.+..+|... .++|++|++++|.+..+++..|..+++|++|+|++| .++.+|+. +..+++|++|+|++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCC
Confidence 357888888898888654 489999999999999998887999999999999999 99999775 589999999999999
Q ss_pred CCCccccc-ccCCCcCcEecccccc
Q 037229 357 GILELPKE-LGFLGNLACLNLENTS 380 (577)
Q Consensus 357 ~i~~lp~~-i~~L~~L~~L~l~~~~ 380 (577)
.++.+|.. +.++++|++|++++|.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 99999885 8999999999999993
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.03 E-value=1.3e-11 Score=113.38 Aligned_cols=127 Identities=17% Similarity=0.133 Sum_probs=96.3
Q ss_pred CccEEeCccC--CCCCcchhhcCCCCcccEEEccCCCCCcccchhhhcCcCCCEEeccCCCCCcccccccCCCcCcEecc
Q 037229 299 QLLTLFLNIN--PLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSSSGILELPKELGFLGNLACLNL 376 (577)
Q Consensus 299 ~Lr~L~l~~~--~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l 376 (577)
.++...+.+. .++.+|.. +..+++|++|++++| .+..+| .++.+++|++|++++|.+..+|..++.+++|++|++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~-~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L 100 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDAT-LSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWI 100 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHH-HHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEE
T ss_pred chheeEeccccCcHhhhhHH-HhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEEC
Confidence 4555555554 25566664 788889999999998 888888 888889999999999888888888888888999999
Q ss_pred cccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCccCceeEEEecCc
Q 037229 377 ENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHLNVFSITLKSS 444 (577)
Q Consensus 377 ~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 444 (577)
++| .+..+|. ++++++|++|++.+|... ....+..+..+++|+.|+++.+..
T Consensus 101 ~~N-~l~~l~~--~~~l~~L~~L~l~~N~i~-------------~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 101 SYN-QIASLSG--IEKLVNLRVLYMSNNKIT-------------NWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp EEE-ECCCHHH--HHHHHHSSEEEESEEECC-------------CHHHHHHHTTTTTCSEEEECSCHH
T ss_pred cCC-cCCcCCc--cccCCCCCEEECCCCcCC-------------chhHHHHHhcCCCCCEEEecCCcc
Confidence 988 7788874 888889999999888611 111224577778888888876543
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.75 E-value=1.6e-08 Score=101.36 Aligned_cols=98 Identities=20% Similarity=0.189 Sum_probs=57.3
Q ss_pred EeCccC-CCCCcchhhcCCCCcccEEEccC-CCCCcccc-hhhhcCcCCCEEeccCCCCCcccc-cccCCCcCcEecccc
Q 037229 303 LFLNIN-PLSMIGGDLFQFKPCLKVLNLSN-SPCLEKLP-SRISRLVSLQHLDLSSSGILELPK-ELGFLGNLACLNLEN 378 (577)
Q Consensus 303 L~l~~~-~~~~~~~~~~~~l~~L~~L~L~~-~~~l~~lp-~~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~ 378 (577)
+++.++ .+..+|. +..+.+|++|+|++ | .+..+| ..|+.|.+|++|+|++|.++.+|. .|++|++|+.|+|++
T Consensus 13 v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 13 LRCTRDGALDSLHH--LPGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp EECCSSCCCTTTTT--SCSCSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEcCCCCCCCccCC--CCCCCCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 455555 4555655 55566666666664 5 666554 346666666666666666665544 356666666666666
Q ss_pred cccccccchHHhcCCCCCcEEEeeeec
Q 037229 379 TSSHGTITRQLRSNFSKPQVLRMFRFY 405 (577)
Q Consensus 379 ~~~l~~lp~~~i~~l~~L~~L~l~~~~ 405 (577)
| .+..+|.+.+..+. |++|++.+|.
T Consensus 90 N-~l~~~~~~~~~~~~-L~~l~l~~N~ 114 (347)
T 2ifg_A 90 N-ALESLSWKTVQGLS-LQELVLSGNP 114 (347)
T ss_dssp S-CCSCCCSTTTCSCC-CCEEECCSSC
T ss_pred C-ccceeCHHHcccCC-ceEEEeeCCC
Confidence 6 55666654333333 6666666554
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.74 E-value=1.6e-08 Score=100.51 Aligned_cols=56 Identities=16% Similarity=0.174 Sum_probs=32.9
Q ss_pred CCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccch-hhhcCcCCCEEecc
Q 037229 297 SPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPS-RISRLVSLQHLDLS 354 (577)
Q Consensus 297 ~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~L~ 354 (577)
+++|+.+.+.. .+..++...|..+.+|+.++++++ .+..+++ .|....++.++.+.
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n-~i~~i~~~aF~~~~~l~~l~~~ 156 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKK-TAPNLLPEALADSVTAIFIPLG 156 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCS-SCCEECTTSSCTTTCEEEECTT
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCC-CccccchhhhcCCCceEEecCc
Confidence 66667776666 566666666667777777777666 5555532 34444444444443
No 145
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.73 E-value=2.9e-08 Score=98.66 Aligned_cols=53 Identities=11% Similarity=0.105 Sum_probs=23.9
Q ss_pred CcCCCEEeccCCCCCccccc-ccCCCcCcEecccccccccccchHHhcCCCCCcEE
Q 037229 345 LVSLQHLDLSSSGILELPKE-LGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVL 399 (577)
Q Consensus 345 l~~L~~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L 399 (577)
+.+|+.|+|.. .++.++.. |..+++|+.|++.++ .+..++..++..+.++..+
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n-~i~~i~~~aF~~~~~l~~l 153 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKK-TAPNLLPEALADSVTAIFI 153 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCS-SCCEECTTSSCTTTCEEEE
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCC-CccccchhhhcCCCceEEe
Confidence 45555555544 44444433 444555555555544 3334444334444433333
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.70 E-value=4.3e-08 Score=98.19 Aligned_cols=102 Identities=17% Similarity=0.106 Sum_probs=87.5
Q ss_pred EEEEecC-CCCCCcCCCCCCCccEEeCcc-CCCCCcchhhcCCCCcccEEEccCCCCCcccch-hhhcCcCCCEEeccCC
Q 037229 280 RVSLKEN-KIGDLWETPTSPQLLTLFLNI-NPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPS-RISRLVSLQHLDLSSS 356 (577)
Q Consensus 280 ~l~l~~~-~~~~l~~~~~~~~Lr~L~l~~-~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~L~~~ 356 (577)
.+.+.++ .+..+|....+.+|+.|++++ |.+..+++..|..+.+|++|+|++| .+..+|+ .|+.|++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCCC
Confidence 3456666 788888877788999999996 8899999888999999999999999 9998855 6899999999999999
Q ss_pred CCCcccccccCCCcCcEeccccccccc
Q 037229 357 GILELPKELGFLGNLACLNLENTSSHG 383 (577)
Q Consensus 357 ~i~~lp~~i~~L~~L~~L~l~~~~~l~ 383 (577)
.+..+|..+....+|+.|++.+| .+.
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N-~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGN-PLH 116 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSS-CCC
T ss_pred ccceeCHHHcccCCceEEEeeCC-Ccc
Confidence 99999987655445999999998 443
No 147
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.68 E-value=6.1e-07 Score=91.37 Aligned_cols=217 Identities=15% Similarity=0.084 Sum_probs=138.6
Q ss_pred CccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccc-hhhhcCcCCCEEeccCCCCCcccccccCCCcCcEeccc
Q 037229 299 QLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLP-SRISRLVSLQHLDLSSSGILELPKELGFLGNLACLNLE 377 (577)
Q Consensus 299 ~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~L~l~ 377 (577)
+|+.+.+..+ +..++...|..+ .|+.+.+.. .++.++ ..|..+.+|+.+++..++++.+|.......+|+.+.+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT--TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECC
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC--CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeC
Confidence 6888888766 778888878875 699998885 477774 46888899999999998999988875557889999998
Q ss_pred ccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCccCceeEEEecCcccccCCCccCccc
Q 037229 378 NTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHLNVFSITLKSSYALQKPNSEHTRS 457 (577)
Q Consensus 378 ~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~~~l~~l~~~~l~~ 457 (577)
.+ ++.++..++.++++|+.+.+..+- .......+.+ .+|+.+.+.. .+..+.
T Consensus 212 ~~--l~~I~~~aF~~~~~L~~l~l~~~l---------------~~I~~~aF~~-~~L~~i~lp~-~i~~I~--------- 263 (401)
T 4fdw_A 212 VT--LKEIGSQAFLKTSQLKTIEIPENV---------------STIGQEAFRE-SGITTVKLPN-GVTNIA--------- 263 (401)
T ss_dssp TT--CCEECTTTTTTCTTCCCEECCTTC---------------CEECTTTTTT-CCCSEEEEET-TCCEEC---------
T ss_pred Cc--hheehhhHhhCCCCCCEEecCCCc---------------cCcccccccc-CCccEEEeCC-CccEEC---------
Confidence 54 788888778899999999887542 1112223333 5677777742 111111
Q ss_pred eeeecCCCCCCCcEEEecccCCceEEecccCCCCCCCCC--ccCCCCCcceEeeccCCCcceecCC-----CcccEEecC
Q 037229 458 LEVLPLAEMRQLDKLHIAFCTRLQEFEIECPGRNLMDLT--WLIFAPNFRKIDINQSSHMEEIICI-----DRLRKVSGG 530 (577)
Q Consensus 458 L~~~~l~~l~~L~~L~l~~~~~l~~l~l~~~~~~l~~l~--~l~~l~~L~~L~l~~~~~~~~~~~~-----~~L~~L~l~ 530 (577)
...+..+++|+.+.+.+..... . .+..++ .+.++++|+.+.|.. .++.+... ++|+.+.|.
T Consensus 264 --~~aF~~c~~L~~l~l~~~~~~~------~--~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp 331 (401)
T 4fdw_A 264 --SRAFYYCPELAEVTTYGSTFND------D--PEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIP 331 (401)
T ss_dssp --TTTTTTCTTCCEEEEESSCCCC------C--TTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEEC
T ss_pred --hhHhhCCCCCCEEEeCCccccC------C--cccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEEC
Confidence 1235667778888776532110 0 111111 455677777777763 24444332 677777774
Q ss_pred CcccccccccCC-CCCCCcceEeeecCCCCCcCC
Q 037229 531 YKKILKRIYPDV-LPLKNLKGITVSSCPNLKRLP 563 (577)
Q Consensus 531 ~~~~l~~l~~~~-~~~~~L~~L~i~~c~~L~~lp 563 (577)
. +++.+.... ..+ +|+.+.+.+. .+..++
T Consensus 332 ~--~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~ 361 (401)
T 4fdw_A 332 A--NVTQINFSAFNNT-GIKEVKVEGT-TPPQVF 361 (401)
T ss_dssp T--TCCEECTTSSSSS-CCCEEEECCS-SCCBCC
T ss_pred c--cccEEcHHhCCCC-CCCEEEEcCC-CCcccc
Confidence 3 355555433 234 7777777654 333433
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.65 E-value=1.1e-06 Score=89.34 Aligned_cols=212 Identities=13% Similarity=0.117 Sum_probs=140.3
Q ss_pred eeEEEEecCCCCCCcCC--CCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchhhhcCcCCCEEeccC
Q 037229 278 TRRVSLKENKIGDLWET--PTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSS 355 (577)
Q Consensus 278 ~r~l~l~~~~~~~l~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~ 355 (577)
++.+.+..+ +..+... .+ .+|+.+.+.. .+..++...|..+.+|+.+++.++ .++.+|...-...+|+.+.|..
T Consensus 137 L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~lp~ 212 (401)
T 4fdw_A 137 IAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFVYAGIEEVLLPV 212 (401)
T ss_dssp CSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTTTCCCSEEECCT
T ss_pred ccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCC-cceEechhhEeecccCEEEeCC
Confidence 555555443 4333332 33 3688888876 577888888999999999999998 8998877554568999999975
Q ss_pred CCCCccccc-ccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCccC
Q 037229 356 SGILELPKE-LGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHL 434 (577)
Q Consensus 356 ~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 434 (577)
.++.++.. |.++.+|+.+++..+ ++.++..++.+ .+|+.+.+..+- .......+.++++|
T Consensus 213 -~l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~~i---------------~~I~~~aF~~c~~L 273 (401)
T 4fdw_A 213 -TLKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPNGV---------------TNIASRAFYYCPEL 273 (401)
T ss_dssp -TCCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEETTC---------------CEECTTTTTTCTTC
T ss_pred -chheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCCCc---------------cEEChhHhhCCCCC
Confidence 47777664 788899999999874 67888776777 789999985432 23344567788889
Q ss_pred ceeEEEecCcccccCCCccCccceeeecCCCCCCCcEEEecccCCceEEecccCCCCCCCCCccCCCCCcceEeeccCCC
Q 037229 435 NVFSITLKSSYALQKPNSEHTRSLEVLPLAEMRQLDKLHIAFCTRLQEFEIECPGRNLMDLTWLIFAPNFRKIDINQSSH 514 (577)
Q Consensus 435 ~~L~l~~~~~~~l~~l~~~~l~~L~~~~l~~l~~L~~L~l~~~~~l~~l~l~~~~~~l~~l~~l~~l~~L~~L~l~~~~~ 514 (577)
+.+.+..+....- ....+..-.+..+++|+.+.+.+ .++.+.- ..+.++++|+.+.|..+
T Consensus 274 ~~l~l~~~~~~~~------~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~----------~aF~~c~~L~~l~lp~~-- 333 (401)
T 4fdw_A 274 AEVTTYGSTFNDD------PEAMIHPYCLEGCPKLARFEIPE--SIRILGQ----------GLLGGNRKVTQLTIPAN-- 333 (401)
T ss_dssp CEEEEESSCCCCC------TTCEECTTTTTTCTTCCEECCCT--TCCEECT----------TTTTTCCSCCEEEECTT--
T ss_pred CEEEeCCccccCC------cccEECHHHhhCCccCCeEEeCC--ceEEEhh----------hhhcCCCCccEEEECcc--
Confidence 9888875432200 00111112355677777777653 2222211 14567889999999644
Q ss_pred cceecCC----CcccEEecCCc
Q 037229 515 MEEIICI----DRLRKVSGGYK 532 (577)
Q Consensus 515 ~~~~~~~----~~L~~L~l~~~ 532 (577)
+..+... .+|+.+.+.+.
T Consensus 334 l~~I~~~aF~~~~L~~l~l~~n 355 (401)
T 4fdw_A 334 VTQINFSAFNNTGIKEVKVEGT 355 (401)
T ss_dssp CCEECTTSSSSSCCCEEEECCS
T ss_pred ccEEcHHhCCCCCCCEEEEcCC
Confidence 4444332 57888887764
No 149
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.41 E-value=2.2e-06 Score=85.54 Aligned_cols=165 Identities=11% Similarity=0.042 Sum_probs=106.2
Q ss_pred CCccccHHHHHHHHHHhhcCCCceEEEEEeccch----hHHHH------------------------------HHHhCCC
Q 037229 32 DLTVGLESTFDQVWSCLVEEEQVGIIGLYGMEGW----IQEQI------------------------------RRKLGLV 77 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~~~~~vv~I~G~gGw----~~~~i------------------------------~~~l~~~ 77 (577)
+.+|||+++++++.+++.. + +++.|+|++|. +.+.+ ...+...
T Consensus 12 ~~~~gR~~el~~L~~~l~~-~--~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 88 (350)
T 2qen_A 12 EDIFDREEESRKLEESLEN-Y--PLTLLLGIRRVGKSSLLRAFLNERPGILIDCRELYAERGHITREELIKELQSTISPF 88 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHH-C--SEEEEECCTTSSHHHHHHHHHHHSSEEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSH
T ss_pred HhcCChHHHHHHHHHHHhc-C--CeEEEECCCcCCHHHHHHHHHHHcCcEEEEeecccccccCCCHHHHHHHHHHHHHHH
Confidence 6799999999999999876 3 78999999991 22222 2222110
Q ss_pred --------------cc--hhccCCHHHHHHHHHHhcc--ccEEEEEecCCChhh---------hcccCCCCCCCCCCcEE
Q 037229 78 --------------DD--LWARKGLEEKAMNIFGILS--KEFVLCWMMCGSELI---------LTQMGVPVPNPKRMSKV 130 (577)
Q Consensus 78 --------------~~--~~~~~~~~~~~~~l~~~L~--kr~LlVLDdv~~~~~---------~~~l~~~~~~~~~gsrI 130 (577)
.. .....+...+.+.+.+..+ ++++||+||+..... +..+..... ...+.++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~-~~~~~~~ 167 (350)
T 2qen_A 89 QKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYD-SLPNLKI 167 (350)
T ss_dssp HHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHH-HCTTEEE
T ss_pred HhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHH-hcCCeEE
Confidence 00 0012355666666766665 489999999976432 222222111 1246789
Q ss_pred EEEeCchhhhhc-----------C-CCCceEecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCchHHHH
Q 037229 131 LFTTRFVEVYGH-----------K-EADEMFRMECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLPLVLVT 198 (577)
Q Consensus 131 ivTTR~~~v~~~-----------~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 198 (577)
|+|++...+... . .....+++.+|+.+++.+++...+...... --.+....+.+.|+|.|+++..
T Consensus 168 il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~---~~~~~~~~i~~~tgG~P~~l~~ 244 (350)
T 2qen_A 168 ILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD---VPENEIEEAVELLDGIPGWLVV 244 (350)
T ss_dssp EEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC---CCHHHHHHHHHHHTTCHHHHHH
T ss_pred EEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHhCCCHHHHHH
Confidence 999987653211 1 112478999999999999998754222111 1245778899999999999998
Q ss_pred HHHHH
Q 037229 199 TARAM 203 (577)
Q Consensus 199 ~g~~L 203 (577)
++..+
T Consensus 245 ~~~~~ 249 (350)
T 2qen_A 245 FGVEY 249 (350)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88754
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.37 E-value=4.2e-08 Score=98.98 Aligned_cols=125 Identities=18% Similarity=0.098 Sum_probs=59.8
Q ss_pred eeEEEEecCCCCCCcCC-------CCCCCccEEeCccCCCCCcc-hhhcCCCCcccEEEccCCCCCcccc-hhh-----h
Q 037229 278 TRRVSLKENKIGDLWET-------PTSPQLLTLFLNINPLSMIG-GDLFQFKPCLKVLNLSNSPCLEKLP-SRI-----S 343 (577)
Q Consensus 278 ~r~l~l~~~~~~~l~~~-------~~~~~Lr~L~l~~~~~~~~~-~~~~~~l~~L~~L~L~~~~~l~~lp-~~i-----~ 343 (577)
++.+.+.++.+...... ...++|++|++++|.+.... ..+...+++|++|+|++| .+.... ..+ .
T Consensus 74 L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L~~ 152 (372)
T 3un9_A 74 LRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLLLH 152 (372)
T ss_dssp CCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHHHS
T ss_pred CCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHHHh
Confidence 55666666555421110 12345666666666543211 111223445666666666 554321 111 1
Q ss_pred cCcCCCEEeccCCCCCc-----ccccccCCCcCcEeccccccccccc-----chHHhcCCCCCcEEEeeeec
Q 037229 344 RLVSLQHLDLSSSGILE-----LPKELGFLGNLACLNLENTSSHGTI-----TRQLRSNFSKPQVLRMFRFY 405 (577)
Q Consensus 344 ~l~~L~~L~L~~~~i~~-----lp~~i~~L~~L~~L~l~~~~~l~~l-----p~~~i~~l~~L~~L~l~~~~ 405 (577)
..++|++|+|++|.+.. ++..+..+++|++|+|++| .+... +.. +...++|++|++++|.
T Consensus 153 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~-L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 153 DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQ-LDRNRQLQELNVAYNG 222 (372)
T ss_dssp TTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHH-GGGCSCCCEEECCSSC
T ss_pred cCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHH-HhcCCCcCeEECCCCC
Confidence 24556666666665542 3334445556666666665 33321 222 4455566666666554
No 151
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.35 E-value=1.6e-06 Score=86.79 Aligned_cols=102 Identities=13% Similarity=0.071 Sum_probs=65.8
Q ss_pred ccEEEEEecCCChh-----hhcccCCCCCCCCCCcEEEEEeCchhhhhc----------C-CC-CceEecCCCCHHHHHH
Q 037229 99 KEFVLCWMMCGSEL-----ILTQMGVPVPNPKRMSKVLFTTRFVEVYGH----------K-EA-DEMFRMECLRHEEAWK 161 (577)
Q Consensus 99 kr~LlVLDdv~~~~-----~~~~l~~~~~~~~~gsrIivTTR~~~v~~~----------~-~~-~~~~~l~~L~~~~~~~ 161 (577)
++++||+||+...+ +|..+...+.+...+.++|+|+|....... . +. ...+.+.+|+.+++.+
T Consensus 137 ~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~ 216 (357)
T 2fna_A 137 DNVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIE 216 (357)
T ss_dssp SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHH
T ss_pred CCeEEEEECHHHhhccCchhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHH
Confidence 38999999996532 221111111111236789999998654211 1 11 2578999999999999
Q ss_pred HHHHhhCCCCCCCCCChhHHHHHHHHHcCCCchHHHHHHHHHhc
Q 037229 162 LFQMKVGKETMDDHSDIPKLVEIVTKECGGLPLVLVTTARAMAY 205 (577)
Q Consensus 162 Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~~ 205 (577)
++...+.... ...... ..|++.|+|.|+++..++..+..
T Consensus 217 ~l~~~~~~~~-~~~~~~----~~i~~~t~G~P~~l~~~~~~~~~ 255 (357)
T 2fna_A 217 FLRRGFQEAD-IDFKDY----EVVYEKIGGIPGWLTYFGFIYLD 255 (357)
T ss_dssp HHHHHHHHHT-CCCCCH----HHHHHHHCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC-CCCCcH----HHHHHHhCCCHHHHHHHHHHHcc
Confidence 9987542111 111222 78999999999999999877643
No 152
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.30 E-value=1.5e-07 Score=94.94 Aligned_cols=162 Identities=16% Similarity=0.136 Sum_probs=94.0
Q ss_pred CCCccEEeCccCCCCCcchhhc----C-CCCcccEEEccCCCCCccc--chhhhcCcCCCEEeccCCCCCccc-----cc
Q 037229 297 SPQLLTLFLNINPLSMIGGDLF----Q-FKPCLKVLNLSNSPCLEKL--PSRISRLVSLQHLDLSSSGILELP-----KE 364 (577)
Q Consensus 297 ~~~Lr~L~l~~~~~~~~~~~~~----~-~l~~L~~L~L~~~~~l~~l--p~~i~~l~~L~~L~L~~~~i~~lp-----~~ 364 (577)
.++|++|++++|.+.......+ . ...+|++|+|++| .+..- ..-...+.+|++|+|++|.+.... ..
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 3567788888887554332222 2 3367888888888 77532 222334667888888888775322 22
Q ss_pred c-cCCCcCcEecccccccccc-----cchHHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCccCceeE
Q 037229 365 L-GFLGNLACLNLENTSSHGT-----ITRQLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHLNVFS 438 (577)
Q Consensus 365 i-~~L~~L~~L~l~~~~~l~~-----lp~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~ 438 (577)
+ ...++|++|++++| .+.. ++.. +..+++|++|++++|..... ........+...++|+.|+
T Consensus 150 L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~-L~~~~~L~~L~Ls~N~l~~~----------g~~~L~~~L~~~~~L~~L~ 217 (372)
T 3un9_A 150 LLHDQCQITTLRLSNN-PLTAAGVAVLMEG-LAGNTSVTHLSLLHTGLGDE----------GLELLAAQLDRNRQLQELN 217 (372)
T ss_dssp HHSTTCCCCEEECCSS-CCHHHHHHHHHHH-HHTCSSCCEEECTTSSCHHH----------HHHHHHHHGGGCSCCCEEE
T ss_pred HHhcCCccceeeCCCC-CCChHHHHHHHHH-HhcCCCcCEEeCCCCCCCcH----------HHHHHHHHHhcCCCcCeEE
Confidence 2 24567888888888 5543 3333 56778888888888761100 0112244556667788888
Q ss_pred EEecCcccccCCCccCccceeeecCCCCCCCcEEEecccC
Q 037229 439 ITLKSSYALQKPNSEHTRSLEVLPLAEMRQLDKLHIAFCT 478 (577)
Q Consensus 439 l~~~~~~~l~~l~~~~l~~L~~~~l~~l~~L~~L~l~~~~ 478 (577)
++.+.+..... ..+ ...+...++|++|+++++.
T Consensus 218 Ls~N~i~~~g~------~~l-~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 218 VAYNGAGDTAA------LAL-ARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp CCSSCCCHHHH------HHH-HHHHHHCSSCCEEECTTSS
T ss_pred CCCCCCCHHHH------HHH-HHHHHhCCCCCEEeccCCC
Confidence 88776542110 000 0012345678888887765
No 153
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.28 E-value=6.6e-06 Score=77.27 Aligned_cols=168 Identities=13% Similarity=0.100 Sum_probs=109.1
Q ss_pred CCccccHHHHHHHHHHhhcCCCceEEEEEeccch----hHHHHHHHhCCCcc------------------------hh--
Q 037229 32 DLTVGLESTFDQVWSCLVEEEQVGIIGLYGMEGW----IQEQIRRKLGLVDD------------------------LW-- 81 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~~~~~vv~I~G~gGw----~~~~i~~~l~~~~~------------------------~~-- 81 (577)
++++|++..++.+..++.......++.|+|.+|. +.+.+++.+..... ..
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDA 102 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEET
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEecC
Confidence 5689999999999999987544458889999993 55555555432100 00
Q ss_pred -ccCCHHHHHHHHHHhc-----c-ccEEEEEecCCC--hhhhcccCCCCCCCCCCcEEEEEeCchhhh-h-cCCCCceEe
Q 037229 82 -ARKGLEEKAMNIFGIL-----S-KEFVLCWMMCGS--ELILTQMGVPVPNPKRMSKVLFTTRFVEVY-G-HKEADEMFR 150 (577)
Q Consensus 82 -~~~~~~~~~~~l~~~L-----~-kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gsrIivTTR~~~v~-~-~~~~~~~~~ 150 (577)
.....+. ...+.+.+ . ++.+||+||++. ...++.+...+.....+.++|+||+..... . .......++
T Consensus 103 ~~~~~~~~-~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~~i~ 181 (250)
T 1njg_A 103 ASRTKVED-TRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFH 181 (250)
T ss_dssp TCGGGHHH-HHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred cccccHHH-HHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhhhcc
Confidence 0111222 23333333 2 578999999965 345555554444445578899988765421 1 112246889
Q ss_pred cCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCchHHHHHHHHH
Q 037229 151 MECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLPLVLVTTARAM 203 (577)
Q Consensus 151 l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L 203 (577)
+.+++.++..+++...+..... .--.+....+++.|+|.|..+..+....
T Consensus 182 l~~l~~~e~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 182 LKALDVEQIRHQLEHILNEEHI---AHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp CCCCCHHHHHHHHHHHHHHTTC---CBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9999999999999987754321 1123567789999999999887766443
No 154
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.22 E-value=6e-06 Score=84.53 Aligned_cols=164 Identities=10% Similarity=0.008 Sum_probs=98.8
Q ss_pred CCccccHHHHHHHHHHh-hc---C--CCceEEEE--Eeccch----hH--------------------------------
Q 037229 32 DLTVGLESTFDQVWSCL-VE---E--EQVGIIGL--YGMEGW----IQ-------------------------------- 67 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L-~~---~--~~~~vv~I--~G~gGw----~~-------------------------------- 67 (577)
+.++||+++++++.+++ .. + .....+.| +|++|. +.
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 68999999999999998 42 1 13345555 999992 22
Q ss_pred ---HHHHHHhCCCcchhccCCHHHHHHHHHHhcc---ccEEEEEecCCChh--------hhcccCCCCCCC---C--CCc
Q 037229 68 ---EQIRRKLGLVDDLWARKGLEEKAMNIFGILS---KEFVLCWMMCGSEL--------ILTQMGVPVPNP---K--RMS 128 (577)
Q Consensus 68 ---~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~---kr~LlVLDdv~~~~--------~~~~l~~~~~~~---~--~gs 128 (577)
+.++.+++.... ....+...+...+.+.+. ++++||+||++... .+..+...+... + ...
T Consensus 102 ~~~~~l~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v 180 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQ-VRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI 180 (412)
T ss_dssp HHHHHHHHHHTCCCC-CTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred HHHHHHHHHhCCCCC-CCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceE
Confidence 223333322110 012234556666777765 68999999997632 233222222111 1 334
Q ss_pred EEEEEeCchhhhhcC--------C-CCceEecCCCCHHHHHHHHHHhh---CCCCCCCCCChhHHHHHHHHHcC------
Q 037229 129 KVLFTTRFVEVYGHK--------E-ADEMFRMECLRHEEAWKLFQMKV---GKETMDDHSDIPKLVEIVTKECG------ 190 (577)
Q Consensus 129 rIivTTR~~~v~~~~--------~-~~~~~~l~~L~~~~~~~Lf~~~a---~~~~~~~~~~~~~~~~~i~~~c~------ 190 (577)
.||+||+...+...+ . ....+.+.+++.++++++|...+ +... .--.+....+++.|+
T Consensus 181 ~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~ 256 (412)
T 1w5s_A 181 GFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDT----VWEPRHLELISDVYGEDKGGD 256 (412)
T ss_dssp EEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTT----SCCHHHHHHHHHHHCGGGTSC
T ss_pred EEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCC----CCChHHHHHHHHHHHHhccCC
Confidence 588888765532111 1 12238999999999999997654 3221 122467788899999
Q ss_pred CCchHHHHHH
Q 037229 191 GLPLVLVTTA 200 (577)
Q Consensus 191 glPLai~~~g 200 (577)
|.|..+..+.
T Consensus 257 G~p~~~~~l~ 266 (412)
T 1w5s_A 257 GSARRAIVAL 266 (412)
T ss_dssp CCHHHHHHHH
T ss_pred CcHHHHHHHH
Confidence 9997655443
No 155
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.10 E-value=3.3e-06 Score=84.37 Aligned_cols=60 Identities=13% Similarity=0.139 Sum_probs=33.0
Q ss_pred CCCCCcEEEecccCCceEEecccCCCCCCCCCccCCCCCcceEeeccCCCcce-----ecCC----CcccEEecCCcc
Q 037229 465 EMRQLDKLHIAFCTRLQEFEIECPGRNLMDLTWLIFAPNFRKIDINQSSHMEE-----IICI----DRLRKVSGGYKK 533 (577)
Q Consensus 465 ~l~~L~~L~l~~~~~l~~l~l~~~~~~l~~l~~l~~l~~L~~L~l~~~~~~~~-----~~~~----~~L~~L~l~~~~ 533 (577)
.+++|+.|.+.+|....... ..+.....+|+|++|+|+.|. +.+ +... ++|+.|+|++|.
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~--------~~la~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVV--------EMFLESDILPQLETMDISAGV-LTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHH--------HHHHHCSSGGGCSEEECCSSC-CBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCCCcCEEeCCCCCCchHHH--------HHHHhCccCCCCCEEECCCCC-CChHHHHHHHhhcccCCcceEEECCCCc
Confidence 46778888887764321000 000001246888888887665 333 1111 778888887764
No 156
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.89 E-value=7.6e-06 Score=81.78 Aligned_cols=38 Identities=18% Similarity=0.266 Sum_probs=17.5
Q ss_pred cCCCCcccEEEccCCCCCcccchhhhcCcCCCEEeccCCCC
Q 037229 318 FQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSSSGI 358 (577)
Q Consensus 318 ~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~~~i 358 (577)
+..+++|+.|+++++ .-..+|. + .+++|++|+|..|.+
T Consensus 168 l~~~P~L~~L~L~g~-~~l~l~~-~-~~~~L~~L~L~~~~l 205 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGT-NNLSIGK-K-PRPNLKSLEIISGGL 205 (362)
T ss_dssp HHTCTTCCEEEEECC-BTCBCCS-C-BCTTCSEEEEECSBC
T ss_pred HhcCCCCcEEEEeCC-CCceecc-c-cCCCCcEEEEecCCC
Confidence 344555555555554 2112332 2 245555555555443
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.85 E-value=1.3e-05 Score=70.42 Aligned_cols=92 Identities=11% Similarity=0.094 Sum_probs=62.6
Q ss_pred CcchhhcCCCCcccEEEccCCCCCccc-chhhhcCcCCCEEeccCCC-CCcc-cccccCC----CcCcEecccccccccc
Q 037229 312 MIGGDLFQFKPCLKVLNLSNSPCLEKL-PSRISRLVSLQHLDLSSSG-ILEL-PKELGFL----GNLACLNLENTSSHGT 384 (577)
Q Consensus 312 ~~~~~~~~~l~~L~~L~L~~~~~l~~l-p~~i~~l~~L~~L~L~~~~-i~~l-p~~i~~L----~~L~~L~l~~~~~l~~ 384 (577)
.+|.. ...-..|+.||+++| .++.. -..+..+++|++|+|++|. |+.- -..+..+ ++|++|++++|..+++
T Consensus 52 ~LP~~-~~~~~~L~~LDLs~~-~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 52 HLPTG-PLDKYKIQAIDATDS-CIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp GSCCC-STTCCCEEEEEEESC-CCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred cCCcc-cCCCceEeEEeCcCC-CccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence 34543 223357999999999 67643 3456788899999999884 5521 1123443 3688999998876765
Q ss_pred cchHHhcCCCCCcEEEeeeec
Q 037229 385 ITRQLRSNFSKPQVLRMFRFY 405 (577)
Q Consensus 385 lp~~~i~~l~~L~~L~l~~~~ 405 (577)
---..+.++++|++|++.+|.
T Consensus 130 ~Gl~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 130 KGIIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HHHHHGGGCTTCCEEEEESCT
T ss_pred HHHHHHhcCCCCCEEECCCCC
Confidence 433337788888888888886
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.83 E-value=1.5e-05 Score=70.01 Aligned_cols=90 Identities=17% Similarity=0.149 Sum_probs=64.0
Q ss_pred CCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCccc-chhhhcC----cCCCEEeccCC-CCCcc-cccccCC
Q 037229 296 TSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKL-PSRISRL----VSLQHLDLSSS-GILEL-PKELGFL 368 (577)
Q Consensus 296 ~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~l-p~~i~~l----~~L~~L~L~~~-~i~~l-p~~i~~L 368 (577)
.-.+|+.|++++|.+....-..+..+++|+.|+|++|..++.- -..++.+ ++|++|+|++| +|+.- -..+.++
T Consensus 59 ~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~ 138 (176)
T 3e4g_A 59 DKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF 138 (176)
T ss_dssp TCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred CCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence 3456899999998866544444678899999999999667642 2345554 47999999988 46531 1235678
Q ss_pred CcCcEeccccccccccc
Q 037229 369 GNLACLNLENTSSHGTI 385 (577)
Q Consensus 369 ~~L~~L~l~~~~~l~~l 385 (577)
++|++|++++|..++..
T Consensus 139 ~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp TTCCEEEEESCTTCCCH
T ss_pred CCCCEEECCCCCCCCch
Confidence 89999999999766653
No 159
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.81 E-value=1.6e-05 Score=71.45 Aligned_cols=108 Identities=15% Similarity=0.120 Sum_probs=76.9
Q ss_pred CCCCCccEEeCccC-CCCCc----chhhcCCCCcccEEEccCCCCCcc-----cchhhhcCcCCCEEeccCCCCCc----
Q 037229 295 PTSPQLLTLFLNIN-PLSMI----GGDLFQFKPCLKVLNLSNSPCLEK-----LPSRISRLVSLQHLDLSSSGILE---- 360 (577)
Q Consensus 295 ~~~~~Lr~L~l~~~-~~~~~----~~~~~~~l~~L~~L~L~~~~~l~~-----lp~~i~~l~~L~~L~L~~~~i~~---- 360 (577)
...+.|++|++.+| .+..- ....+...+.|++|+|++| .+.. +...+...++|++|+|++|.|..
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 45678889999888 65431 1122566788999999999 7763 44556667889999999998764
Q ss_pred -ccccccCCCcCcEecc--cccccccc-----cchHHhcCCCCCcEEEeeeec
Q 037229 361 -LPKELGFLGNLACLNL--ENTSSHGT-----ITRQLRSNFSKPQVLRMFRFY 405 (577)
Q Consensus 361 -lp~~i~~L~~L~~L~l--~~~~~l~~-----lp~~~i~~l~~L~~L~l~~~~ 405 (577)
+...+...++|++|++ ++| .+.. +... +...++|++|++.+|.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~-L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANM-LEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHH-HHHCSSCCEEECCCSS
T ss_pred HHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHH-HHhCCCcCEEeccCCC
Confidence 5666777788999999 666 4443 2232 5567888888888775
No 160
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.81 E-value=0.00012 Score=67.53 Aligned_cols=167 Identities=11% Similarity=0.058 Sum_probs=105.6
Q ss_pred CCccccHHHHHHHHHHhhcCCCceEEEEEeccch----hHHHHHHHhCCCcc--------hhccCCHHHHHHHHHHhc--
Q 037229 32 DLTVGLESTFDQVWSCLVEEEQVGIIGLYGMEGW----IQEQIRRKLGLVDD--------LWARKGLEEKAMNIFGIL-- 97 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~~~~~vv~I~G~gGw----~~~~i~~~l~~~~~--------~~~~~~~~~~~~~l~~~L-- 97 (577)
++++|++..++.+.+++... ....+.|+|..|. +.+.+++.+..... .......+.....+....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~-~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERK-NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFART 95 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTT-CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHHTS
T ss_pred HHHcCcHHHHHHHHHHHhCC-CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHhcc
Confidence 56899999999999999874 3334889999993 66666665421110 012233344444444432
Q ss_pred ----c-ccEEEEEecCCCh--hhhcccCCCCCCCCCCcEEEEEeCchhhh-h-cCCCCceEecCCCCHHHHHHHHHHhhC
Q 037229 98 ----S-KEFVLCWMMCGSE--LILTQMGVPVPNPKRMSKVLFTTRFVEVY-G-HKEADEMFRMECLRHEEAWKLFQMKVG 168 (577)
Q Consensus 98 ----~-kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~~~v~-~-~~~~~~~~~l~~L~~~~~~~Lf~~~a~ 168 (577)
. ++.+||+||++.. ..++.+...+.....+.++|+||+..... . .......+++.+++.++..+++.+.+.
T Consensus 96 ~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~ 175 (226)
T 2chg_A 96 APIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICE 175 (226)
T ss_dssp CCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHH
T ss_pred cCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHH
Confidence 3 6789999999764 33444443333334567899998865421 1 112234789999999999999998774
Q ss_pred CCCCCCCCChhHHHHHHHHHcCCCchHHHHHHHH
Q 037229 169 KETMDDHSDIPKLVEIVTKECGGLPLVLVTTARA 202 (577)
Q Consensus 169 ~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~ 202 (577)
..... --.+....+++.++|.|..+..+...
T Consensus 176 ~~~~~---~~~~~~~~l~~~~~g~~r~l~~~l~~ 206 (226)
T 2chg_A 176 KEGVK---ITEDGLEALIYISGGDFRKAINALQG 206 (226)
T ss_dssp HHTCC---BCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HcCCC---CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 32211 11356677889999999866554433
No 161
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.75 E-value=3.7e-05 Score=72.86 Aligned_cols=84 Identities=30% Similarity=0.321 Sum_probs=61.8
Q ss_pred CCCCcccEEEccCCCCCccc---chhhhcCcCCCEEeccCCCCCcccccccCCC--cCcEecccccccccccc------h
Q 037229 319 QFKPCLKVLNLSNSPCLEKL---PSRISRLVSLQHLDLSSSGILELPKELGFLG--NLACLNLENTSSHGTIT------R 387 (577)
Q Consensus 319 ~~l~~L~~L~L~~~~~l~~l---p~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~--~L~~L~l~~~~~l~~lp------~ 387 (577)
..+++|+.|+|++| .+..+ |..++.+++|++|+|++|.|+.+ ..+..+. +|++|++.+|+-...+| .
T Consensus 167 ~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 56788999999999 77765 45677899999999999988876 3455555 89999999984333344 1
Q ss_pred HHhcCCCCCcEEEeeee
Q 037229 388 QLRSNFSKPQVLRMFRF 404 (577)
Q Consensus 388 ~~i~~l~~L~~L~l~~~ 404 (577)
.++..+++|+.|+-...
T Consensus 245 ~il~~~P~L~~LDg~~v 261 (267)
T 3rw6_A 245 AIRERFPKLLRLDGHEL 261 (267)
T ss_dssp HHHHHCTTCCEESSCBC
T ss_pred HHHHHCcccCeECCcCC
Confidence 24678888888875443
No 162
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.70 E-value=0.00012 Score=73.75 Aligned_cols=165 Identities=13% Similarity=0.076 Sum_probs=100.3
Q ss_pred CCccccHHHHHHHHHHhhcC---CCceEEEEEeccch----hHHHHHHHh------CCCcc--h----------------
Q 037229 32 DLTVGLESTFDQVWSCLVEE---EQVGIIGLYGMEGW----IQEQIRRKL------GLVDD--L---------------- 80 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~---~~~~vv~I~G~gGw----~~~~i~~~l------~~~~~--~---------------- 80 (577)
+.++||+++++.+.+++... .....+.|+|+.|. +.+.++..+ +...- .
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~ 99 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLE 99 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTT
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 68999999999999998752 55668899999993 444444433 11100 0
Q ss_pred -------hccCCHHHHHHHHHHhcc---ccEEEEEecCCChh------hhcccCCCCCC-CCCCcEEEEEeCchhhhhcC
Q 037229 81 -------WARKGLEEKAMNIFGILS---KEFVLCWMMCGSEL------ILTQMGVPVPN-PKRMSKVLFTTRFVEVYGHK 143 (577)
Q Consensus 81 -------~~~~~~~~~~~~l~~~L~---kr~LlVLDdv~~~~------~~~~l~~~~~~-~~~gsrIivTTR~~~v~~~~ 143 (577)
....+.....+.+.+.+. ++.+||+|+++... .+..+...+.. ...+..+|+||+.......+
T Consensus 100 ~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~ 179 (386)
T 2qby_A 100 SLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLL 179 (386)
T ss_dssp TTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGC
T ss_pred HhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhh
Confidence 011234555666777776 48999999997532 22222211111 23356678888876543322
Q ss_pred CC-------CceEecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcC---CCchHHH
Q 037229 144 EA-------DEMFRMECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECG---GLPLVLV 197 (577)
Q Consensus 144 ~~-------~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~---glPLai~ 197 (577)
.. ...+.+.+++.++..+++...+.... ....--.+....+++.++ |.|..+.
T Consensus 180 ~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~G~~r~~~ 242 (386)
T 2qby_A 180 DPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAF-KPGVLPDNVIKLCAALAAREHGDARRAL 242 (386)
T ss_dssp TTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHB-CSSCSCHHHHHHHHHHHHHTTCCHHHHH
T ss_pred CHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhc-cCCCCCHHHHHHHHHHHHHhcCCHHHHH
Confidence 21 24799999999999999998653111 011223456667777777 9887443
No 163
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.64 E-value=0.0017 Score=65.63 Aligned_cols=67 Identities=18% Similarity=0.252 Sum_probs=34.8
Q ss_pred ccCCCCCcceEeeccCCCcceecCC-----CcccEEecCCcccccccccC-CCCCCCcceEeee----------cCCCCC
Q 037229 497 WLIFAPNFRKIDINQSSHMEEIICI-----DRLRKVSGGYKKILKRIYPD-VLPLKNLKGITVS----------SCPNLK 560 (577)
Q Consensus 497 ~l~~l~~L~~L~l~~~~~~~~~~~~-----~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~i~----------~c~~L~ 560 (577)
.+.++++|+.+.|... ++.+... .+|+.+.|-. +++.+... ...+++|+.+.+. .|..|+
T Consensus 306 aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~~~~~~~~~~~~L~ 381 (394)
T 4gt6_A 306 VFAGCISLKSIDIPEG--ITQILDDAFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGSRSQWNAISTDSGLQ 381 (394)
T ss_dssp TTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSCHHHHHTCBCCCCC-
T ss_pred eecCCCCcCEEEeCCc--ccEehHhHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCceeehhhhhccCCCC
Confidence 3456677777777542 4444322 6777777742 35555432 2356778888775 367777
Q ss_pred cCCCCCC
Q 037229 561 RLPLNSN 567 (577)
Q Consensus 561 ~lp~~~~ 567 (577)
.+.+..+
T Consensus 382 ~i~i~~~ 388 (394)
T 4gt6_A 382 NLPVAPG 388 (394)
T ss_dssp -------
T ss_pred EEEeCCC
Confidence 7666544
No 164
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.59 E-value=0.00031 Score=68.93 Aligned_cols=165 Identities=12% Similarity=0.045 Sum_probs=103.5
Q ss_pred CCccccHHHHHHHHHHhhcCCCceEEEEEeccch----hHHHHHHHhCCCc--------chhccCCHHHHHHHHHHhc--
Q 037229 32 DLTVGLESTFDQVWSCLVEEEQVGIIGLYGMEGW----IQEQIRRKLGLVD--------DLWARKGLEEKAMNIFGIL-- 97 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~~~~~vv~I~G~gGw----~~~~i~~~l~~~~--------~~~~~~~~~~~~~~l~~~L-- 97 (577)
++++|++..++.+.+++..+ ....+.|+|++|. +.+.+++.+.... ...+....+.+.+.+....
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~-~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 99 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDG-NMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQK 99 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSC-CCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHHHTHHHHHHHB
T ss_pred HHHHCCHHHHHHHHHHHHcC-CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHHHHHHHHHHhc
Confidence 57899999999999999874 3333889999993 4555555431110 0011223444444444433
Q ss_pred -----c-ccEEEEEecCCCh--hhhcccCCCCCCCCCCcEEEEEeCchhh-hhc-CCCCceEecCCCCHHHHHHHHHHhh
Q 037229 98 -----S-KEFVLCWMMCGSE--LILTQMGVPVPNPKRMSKVLFTTRFVEV-YGH-KEADEMFRMECLRHEEAWKLFQMKV 167 (577)
Q Consensus 98 -----~-kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~~~v-~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a 167 (577)
. ++.++|+||++.. ..++.+...+.....++++|+||+...- ... ......+++.+++.++..+++...+
T Consensus 100 ~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~ 179 (323)
T 1sxj_B 100 KLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQII 179 (323)
T ss_dssp CCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHH
T ss_pred cccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHH
Confidence 4 5889999999763 3455554444333456788888876432 111 1223489999999999999998876
Q ss_pred CCCCCCCCCChhHHHHHHHHHcCCCchH-HHHHH
Q 037229 168 GKETMDDHSDIPKLVEIVTKECGGLPLV-LVTTA 200 (577)
Q Consensus 168 ~~~~~~~~~~~~~~~~~i~~~c~glPLa-i~~~g 200 (577)
...... --.+....+++.|+|.|.. +..+.
T Consensus 180 ~~~~~~---~~~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 180 KLEDVK---YTNDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp HHHTCC---BCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 432211 1135677899999999954 44443
No 165
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.57 E-value=3.3e-05 Score=69.40 Aligned_cols=116 Identities=14% Similarity=0.074 Sum_probs=78.6
Q ss_pred hcCCCCcccEEEccCCCCCc-----ccchhhhcCcCCCEEeccCCCCCc-----ccccccCCCcCcEecccccccccc--
Q 037229 317 LFQFKPCLKVLNLSNSPCLE-----KLPSRISRLVSLQHLDLSSSGILE-----LPKELGFLGNLACLNLENTSSHGT-- 384 (577)
Q Consensus 317 ~~~~l~~L~~L~L~~~~~l~-----~lp~~i~~l~~L~~L~L~~~~i~~-----lp~~i~~L~~L~~L~l~~~~~l~~-- 384 (577)
.+...+.|++|+|++|..+. .+...+...++|++|+|++|.+.. +...+...++|++|+|++| .+..
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g 109 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSG 109 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHH
Confidence 46778899999999874444 345566777899999999998763 4445566678999999998 5554
Q ss_pred ---cchHHhcCCCCCcEEEe--eeecCcccccccccCCccCcccccccccCCccCceeEEEecCc
Q 037229 385 ---ITRQLRSNFSKPQVLRM--FRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHLNVFSITLKSS 444 (577)
Q Consensus 385 ---lp~~~i~~l~~L~~L~l--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~~ 444 (577)
+... +...++|++|++ .+|.... .........+...++|+.|+++++..
T Consensus 110 ~~~l~~~-L~~n~~L~~L~L~~~~N~i~~----------~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 110 ILALVEA-LQSNTSLIELRIDNQSQPLGN----------NVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHG-GGGCSSCCEEECCCCSSCCCH----------HHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHH-HHhCCCceEEEecCCCCCCCH----------HHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 3333 677788999999 6665100 00112334455667888888876654
No 166
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.56 E-value=0.00082 Score=68.07 Aligned_cols=104 Identities=12% Similarity=0.110 Sum_probs=44.4
Q ss_pred CCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccc-hhhhcCcCCCEEeccCCCCCcccccccCCCcCcE
Q 037229 295 PTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLP-SRISRLVSLQHLDLSSSGILELPKELGFLGNLAC 373 (577)
Q Consensus 295 ~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~L~~~~i~~lp~~i~~L~~L~~ 373 (577)
..|.+|+.+.+..+ ...++...|..+.+|+.+.+..+ ++.++ ..+.+...|+.+.+..+ +..+........+|+.
T Consensus 159 ~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~-~~~i~~~~~~~~~l~~ 234 (394)
T 4fs7_A 159 ATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNS-LYYLGDFALSKTGVKN 234 (394)
T ss_dssp TTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCCCCE
T ss_pred cccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCC-ceEeehhhcccCCCce
Confidence 34455555555433 23444444555555555555433 33332 23444444544444332 1122222223344555
Q ss_pred ecccccccccccchHHhcCCCCCcEEEeeee
Q 037229 374 LNLENTSSHGTITRQLRSNFSKPQVLRMFRF 404 (577)
Q Consensus 374 L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~ 404 (577)
+.+... +..+....+..+.+|+.+.+..+
T Consensus 235 i~ip~~--~~~i~~~~f~~~~~l~~~~~~~~ 263 (394)
T 4fs7_A 235 IIIPDS--FTELGKSVFYGCTDLESISIQNN 263 (394)
T ss_dssp EEECTT--CCEECSSTTTTCSSCCEEEECCT
T ss_pred EEECCC--ceecccccccccccceeEEcCCC
Confidence 544432 23333333445555555555433
No 167
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.56 E-value=0.00094 Score=67.28 Aligned_cols=161 Identities=9% Similarity=-0.067 Sum_probs=100.5
Q ss_pred CCccccHHHHHHHHHHhhcC---CCceEEEEEeccch----hHHHHHHHh-----------CCCcc--hh-c--------
Q 037229 32 DLTVGLESTFDQVWSCLVEE---EQVGIIGLYGMEGW----IQEQIRRKL-----------GLVDD--LW-A-------- 82 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~---~~~~vv~I~G~gGw----~~~~i~~~l-----------~~~~~--~~-~-------- 82 (577)
++++||+++++++.+++... .....+.|+|++|. +.+.+++++ +...- .. .
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 68999999999999888652 45668999999993 445555443 11100 00 0
Q ss_pred ----------------cCCHHHHHHHHHHhcc-ccEEEEEecCCChhh-------hcccCCCCCCCCCCcEEEEEeCchh
Q 037229 83 ----------------RKGLEEKAMNIFGILS-KEFVLCWMMCGSELI-------LTQMGVPVPNPKRMSKVLFTTRFVE 138 (577)
Q Consensus 83 ----------------~~~~~~~~~~l~~~L~-kr~LlVLDdv~~~~~-------~~~l~~~~~~~~~gsrIivTTR~~~ 138 (577)
..+.......+.+.+. ++.+|||||++.... +..+.... .+.+||+||+...
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~~t~~~~ 175 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIMISNDIN 175 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEEECSSTT
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEEEECCCc
Confidence 1112445566667777 566999999976422 22222222 5788999998753
Q ss_pred hhhcC------CCCceEecCCCCHHHHHHHHHHhhC---CCCCCCCCChhHHHHHHHHHcC---CCch-HHHHHH
Q 037229 139 VYGHK------EADEMFRMECLRHEEAWKLFQMKVG---KETMDDHSDIPKLVEIVTKECG---GLPL-VLVTTA 200 (577)
Q Consensus 139 v~~~~------~~~~~~~l~~L~~~~~~~Lf~~~a~---~~~~~~~~~~~~~~~~i~~~c~---glPL-ai~~~g 200 (577)
....+ .....+.+.+++.++..++|...+. ... ... .+....+++.|+ |.|. |+..+.
T Consensus 176 ~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~-~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~ 246 (384)
T 2qby_B 176 VRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKG-TYD---DEILSYIAAISAKEHGDARKAVNLLF 246 (384)
T ss_dssp TTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTT-SCC---SHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred hHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccC-CcC---HHHHHHHHHHHHhccCCHHHHHHHHH
Confidence 21111 1123899999999999999998753 222 122 355667777777 8776 444443
No 168
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.46 E-value=0.0013 Score=66.33 Aligned_cols=158 Identities=11% Similarity=0.055 Sum_probs=95.5
Q ss_pred CCccccHHHHHHHHHHhhcC---CCceEEEEEeccch----hHHHHHHHh------------------------------
Q 037229 32 DLTVGLESTFDQVWSCLVEE---EQVGIIGLYGMEGW----IQEQIRRKL------------------------------ 74 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~---~~~~vv~I~G~gGw----~~~~i~~~l------------------------------ 74 (577)
+.++||+.+++++.+++... .....+.|+|++|. +.+.++..+
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 98 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA 98 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence 68999999999999998553 45668889999992 333333332
Q ss_pred -----CCCcchhccCCHHHHHHHHHHhcc---ccEEEEEecCCChh----hhccc---CCCCCCC--CCCcEEEEEeCch
Q 037229 75 -----GLVDDLWARKGLEEKAMNIFGILS---KEFVLCWMMCGSEL----ILTQM---GVPVPNP--KRMSKVLFTTRFV 137 (577)
Q Consensus 75 -----~~~~~~~~~~~~~~~~~~l~~~L~---kr~LlVLDdv~~~~----~~~~l---~~~~~~~--~~gsrIivTTR~~ 137 (577)
+.... ....+.......+.+.+. ++.+|||||++... ..+.+ ....... ..+..+|.||+..
T Consensus 99 l~~~l~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~ 177 (387)
T 2v1u_A 99 IAEAVGVRVP-FTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSL 177 (387)
T ss_dssp HHHHHSCCCC-SSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCS
T ss_pred HHHHhCCCCC-CCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCC
Confidence 21110 012235556667777775 58899999997642 11222 1111111 3356788888766
Q ss_pred hhhhcC------CCC-ceEecCCCCHHHHHHHHHHhhC---CCCCCCCCChhHHHHHHHHHcC---CCch
Q 037229 138 EVYGHK------EAD-EMFRMECLRHEEAWKLFQMKVG---KETMDDHSDIPKLVEIVTKECG---GLPL 194 (577)
Q Consensus 138 ~v~~~~------~~~-~~~~l~~L~~~~~~~Lf~~~a~---~~~~~~~~~~~~~~~~i~~~c~---glPL 194 (577)
.....+ ... ..+.+.+++.++..+++...+. ... ...+ +....+++.++ |.|-
T Consensus 178 ~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~-~~~~---~~~~~l~~~~~~~~G~~r 243 (387)
T 2v1u_A 178 GFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPG-VLDP---DVVPLCAALAAREHGDAR 243 (387)
T ss_dssp TTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTT-TBCS---SHHHHHHHHHHSSSCCHH
T ss_pred chHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCC-CCCH---HHHHHHHHHHHHhccCHH
Confidence 332111 112 4789999999999999998753 222 1222 34566777776 9983
No 169
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.42 E-value=0.00013 Score=69.17 Aligned_cols=80 Identities=26% Similarity=0.329 Sum_probs=62.4
Q ss_pred CCCCccEEeCccCCCCCcch--hhcCCCCcccEEEccCCCCCcccchhhhcCc--CCCEEeccCCCCCc-ccc-------
Q 037229 296 TSPQLLTLFLNINPLSMIGG--DLFQFKPCLKVLNLSNSPCLEKLPSRISRLV--SLQHLDLSSSGILE-LPK------- 363 (577)
Q Consensus 296 ~~~~Lr~L~l~~~~~~~~~~--~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~--~L~~L~L~~~~i~~-lp~------- 363 (577)
.+++|++|++++|.+..++. ..+..+++|++|+|++| .+..+. .+..+. +|++|+|++|.+.. +|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 46789999999999877653 34668999999999999 888773 455555 99999999998863 442
Q ss_pred cccCCCcCcEeccc
Q 037229 364 ELGFLGNLACLNLE 377 (577)
Q Consensus 364 ~i~~L~~L~~L~l~ 377 (577)
.+..+++|+.||=.
T Consensus 246 il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 246 IRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHCTTCCEESSC
T ss_pred HHHHCcccCeECCc
Confidence 36678899998743
No 170
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.33 E-value=0.0025 Score=64.15 Aligned_cols=164 Identities=10% Similarity=-0.026 Sum_probs=102.0
Q ss_pred CCccccHHHHHHHHHHhhcC---C--CceEEEEEeccch----hHHHHHHHhCCC-------------------------
Q 037229 32 DLTVGLESTFDQVWSCLVEE---E--QVGIIGLYGMEGW----IQEQIRRKLGLV------------------------- 77 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~---~--~~~vv~I~G~gGw----~~~~i~~~l~~~------------------------- 77 (577)
+.++||+++++++.+++... . ..+.+.|+|..|. +.+.++..+...
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~ 96 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIAR 96 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHH
Confidence 68999999999999998763 2 2338999999993 444444444221
Q ss_pred -----cchhccCCHHHHHHHHHHhcc---ccEEEEEecCCCh--hhhcccCCCCCCC-C---CCcEEEEEeCchhhhhcC
Q 037229 78 -----DDLWARKGLEEKAMNIFGILS---KEFVLCWMMCGSE--LILTQMGVPVPNP-K---RMSKVLFTTRFVEVYGHK 143 (577)
Q Consensus 78 -----~~~~~~~~~~~~~~~l~~~L~---kr~LlVLDdv~~~--~~~~~l~~~~~~~-~---~gsrIivTTR~~~v~~~~ 143 (577)
.. ....+...+.+.+.+.+. ++.+|||||++.. ..+..+...+... . .+..||+||+........
T Consensus 97 ~l~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l 175 (389)
T 1fnn_A 97 SLNIPFP-RRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNL 175 (389)
T ss_dssp HTTCCCC-SSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTS
T ss_pred HhCccCC-CCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHh
Confidence 00 012234555566666665 5789999999763 3344443333221 1 366788888876543332
Q ss_pred C-------CCceEecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHc---------CCCchHHH
Q 037229 144 E-------ADEMFRMECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKEC---------GGLPLVLV 197 (577)
Q Consensus 144 ~-------~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c---------~glPLai~ 197 (577)
. ....+.+.+++.++..+++...+.... ....--.+....+++.+ .|.|-.+.
T Consensus 176 ~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~ 244 (389)
T 1fnn_A 176 DPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGL-AEGSYSEDILQMIADITGAQTPLDTNRGDARLAI 244 (389)
T ss_dssp CHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHB-CTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHH
T ss_pred CHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhc-CCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHH
Confidence 2 123699999999999999988753211 00112245677888888 78764443
No 171
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.14 E-value=0.0026 Score=64.36 Aligned_cols=120 Identities=21% Similarity=0.137 Sum_probs=79.2
Q ss_pred eeEEEEecCCCCCCcC--CCCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccchhhhcCcCCCEEeccC
Q 037229 278 TRRVSLKENKIGDLWE--TPTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPSRISRLVSLQHLDLSS 355 (577)
Q Consensus 278 ~r~l~l~~~~~~~l~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~~i~~l~~L~~L~L~~ 355 (577)
++.+.+..+ ...+.. +..+.+|+.+.+..+ +..++...|..+..|+.+.+... ...+.........|+.+.+..
T Consensus 164 L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~--~~~i~~~~~~~~~l~~i~ip~ 239 (394)
T 4fs7_A 164 LEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNS--LYYLGDFALSKTGVKNIIIPD 239 (394)
T ss_dssp CCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCCCCEEEECT
T ss_pred CcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCC--ceEeehhhcccCCCceEEECC
Confidence 556666432 222332 367888999888765 67777888999999998887765 333444444556788888765
Q ss_pred CCCCcccc-cccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeee
Q 037229 356 SGILELPK-ELGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRF 404 (577)
Q Consensus 356 ~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~ 404 (577)
+ +..+.. .+..+.+|+.+.+..+ +..++...+..+.+++.+.....
T Consensus 240 ~-~~~i~~~~f~~~~~l~~~~~~~~--~~~i~~~~F~~~~~l~~~~~~~~ 286 (394)
T 4fs7_A 240 S-FTELGKSVFYGCTDLESISIQNN--KLRIGGSLFYNCSGLKKVIYGSV 286 (394)
T ss_dssp T-CCEECSSTTTTCSSCCEEEECCT--TCEECSCTTTTCTTCCEEEECSS
T ss_pred C-ceecccccccccccceeEEcCCC--cceeeccccccccccceeccCce
Confidence 3 344433 3667888999888765 34565555778888887766543
No 172
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.75 E-value=0.083 Score=52.74 Aligned_cols=53 Identities=23% Similarity=0.135 Sum_probs=27.0
Q ss_pred cCCCCCcceEeeccCCCcceecCC-----CcccEEecCCcccccccccCC-CCCCCcceEee
Q 037229 498 LIFAPNFRKIDINQSSHMEEIICI-----DRLRKVSGGYKKILKRIYPDV-LPLKNLKGITV 553 (577)
Q Consensus 498 l~~l~~L~~L~l~~~~~~~~~~~~-----~~L~~L~l~~~~~l~~l~~~~-~~~~~L~~L~i 553 (577)
+..+++|+.+.+.++. ++.+... .+|+.+.|-. +++.+.... ..+.+|+.+.+
T Consensus 282 F~~c~~L~~i~l~~~~-i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 282 CSGCSNLTKVVMDNSA-IETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp TTTCTTCCEEEECCTT-CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCC
T ss_pred cccccccccccccccc-cceehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEE
Confidence 4456777777776443 3333222 6677766642 344444322 23455555544
No 173
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.71 E-value=0.0044 Score=60.67 Aligned_cols=167 Identities=10% Similarity=0.004 Sum_probs=101.9
Q ss_pred CCccccHHHHHHHHHHhhcCCCceEEEEEeccch----hHHHHHHHhCCCcc-----hhccCCH---HHHHHHHHHhc--
Q 037229 32 DLTVGLESTFDQVWSCLVEEEQVGIIGLYGMEGW----IQEQIRRKLGLVDD-----LWARKGL---EEKAMNIFGIL-- 97 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~~~~~vv~I~G~gGw----~~~~i~~~l~~~~~-----~~~~~~~---~~~~~~l~~~L-- 97 (577)
++++|++..++.+.+++.. +...-+-|+|..|. +.+.+++.+..... .....+. +.....+.+..
T Consensus 25 ~~~~g~~~~~~~l~~~l~~-~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKT-GSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFART 103 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHH-TCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTHHHHHHHHHS
T ss_pred HHhhCCHHHHHHHHHHHHc-CCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHHHHHHHHHHhh
Confidence 6799999999999999988 44444889999993 55555555422110 0011111 12222233322
Q ss_pred ----c-ccEEEEEecCCCh--hhhcccCCCCCCCCCCcEEEEEeCchhh-hhcC-CCCceEecCCCCHHHHHHHHHHhhC
Q 037229 98 ----S-KEFVLCWMMCGSE--LILTQMGVPVPNPKRMSKVLFTTRFVEV-YGHK-EADEMFRMECLRHEEAWKLFQMKVG 168 (577)
Q Consensus 98 ----~-kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~~~v-~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~ 168 (577)
. ++.++|+||++.. ..++.+...+.....+.++|+||....- .... .....+++.+++.++..+++...+.
T Consensus 104 ~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~ 183 (327)
T 1iqp_A 104 KPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAE 183 (327)
T ss_dssp CCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred CCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHH
Confidence 1 4789999999753 3445554444333456788888876432 1110 1123789999999999999988764
Q ss_pred CCCCCCCCChhHHHHHHHHHcCCCchHHHHHHHH
Q 037229 169 KETMDDHSDIPKLVEIVTKECGGLPLVLVTTARA 202 (577)
Q Consensus 169 ~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~ 202 (577)
..... --.+....+++.++|.|..+..+...
T Consensus 184 ~~~~~---~~~~~~~~l~~~~~g~~r~~~~~l~~ 214 (327)
T 1iqp_A 184 NEGLE---LTEEGLQAILYIAEGDMRRAINILQA 214 (327)
T ss_dssp TTTCE---ECHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcCCC---CCHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 43311 11356678889999999866544433
No 174
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.64 E-value=0.017 Score=57.64 Aligned_cols=166 Identities=12% Similarity=0.040 Sum_probs=100.8
Q ss_pred CCccccHHHHHHHHHHhhcCCCceEEEEEeccch----hHHHHHHHhCCCcc---------------------h------
Q 037229 32 DLTVGLESTFDQVWSCLVEEEQVGIIGLYGMEGW----IQEQIRRKLGLVDD---------------------L------ 80 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~~~~~vv~I~G~gGw----~~~~i~~~l~~~~~---------------------~------ 80 (577)
++++|++..++.+.+.+..+.....+-|+|..|- +.+.+++.+..... .
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDA 95 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEET
T ss_pred hhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEecc
Confidence 5799999999999999987533457789999993 55666666543110 0
Q ss_pred ---hccCCHHHHHHHHHHhc-c-ccEEEEEecCCCh--hhhcccCCCCCCCCCCcEEEEEeCchh-hhh-cCCCCceEec
Q 037229 81 ---WARKGLEEKAMNIFGIL-S-KEFVLCWMMCGSE--LILTQMGVPVPNPKRMSKVLFTTRFVE-VYG-HKEADEMFRM 151 (577)
Q Consensus 81 ---~~~~~~~~~~~~l~~~L-~-kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~~~-v~~-~~~~~~~~~l 151 (577)
........+...+...- . ++.++|+||+... ..++.+...+.....+..+|++|.... +.. .......+++
T Consensus 96 ~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~ 175 (373)
T 1jr3_A 96 ASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHL 175 (373)
T ss_dssp TCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTSEEEEC
T ss_pred cccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhheeEeeC
Confidence 01112222222221111 2 5689999999653 334444333333344567777776443 211 1122367899
Q ss_pred CCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCchHHHHHH
Q 037229 152 ECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLPLVLVTTA 200 (577)
Q Consensus 152 ~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g 200 (577)
.+++.++..+++...+..... .--.+....+++.++|.|..+..+.
T Consensus 176 ~~l~~~~~~~~l~~~~~~~~~---~~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 176 KALDVEQIRHQLEHILNEEHI---AHEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp CCCCHHHHHHHHHHHHHHHTC---CBCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 999999999998876632221 1113556788999999998776554
No 175
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=96.37 E-value=0.028 Score=54.57 Aligned_cols=164 Identities=11% Similarity=0.050 Sum_probs=100.1
Q ss_pred CCccccHHHHHHHHHHhhcCCCceEEEEEeccch----hHHHHHHHhCCCcc-----------hhccCCHHHHHHHHHHh
Q 037229 32 DLTVGLESTFDQVWSCLVEEEQVGIIGLYGMEGW----IQEQIRRKLGLVDD-----------LWARKGLEEKAMNIFGI 96 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~~~~~vv~I~G~gGw----~~~~i~~~l~~~~~-----------~~~~~~~~~~~~~l~~~ 96 (577)
++++|++..++.+.+++..+ ....+-++|..|. +.+.+++.+..... .................
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~-~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERK-NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFART 95 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTT-CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTSSHHHHHHHHS
T ss_pred HHHhCCHHHHHHHHHHHhCC-CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHHHHHHHHHHhc
Confidence 56899999999999988874 3333889999993 55555555421110 00111112222222222
Q ss_pred --c-c-ccEEEEEecCCCh--hhhcccCCCCCCCCCCcEEEEEeCchh-hhhc-CCCCceEecCCCCHHHHHHHHHHhhC
Q 037229 97 --L-S-KEFVLCWMMCGSE--LILTQMGVPVPNPKRMSKVLFTTRFVE-VYGH-KEADEMFRMECLRHEEAWKLFQMKVG 168 (577)
Q Consensus 97 --L-~-kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~~~-v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~ 168 (577)
+ . ++.++|+||+... ...+.+...+.....+.++|+||.... +... ......+++.+++.++..+++...+.
T Consensus 96 ~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~ 175 (319)
T 2chq_A 96 APIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICE 175 (319)
T ss_dssp CCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHH
Confidence 1 2 5789999999653 345556555544455778888886544 2111 12234889999999999999888764
Q ss_pred CCCCCCCCChhHHHHHHHHHcCCCchHHHHH
Q 037229 169 KETMDDHSDIPKLVEIVTKECGGLPLVLVTT 199 (577)
Q Consensus 169 ~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 199 (577)
..... --.+....+++.++|.+..+...
T Consensus 176 ~~~~~---i~~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 176 KEGVK---ITEDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp TTCCC---BCHHHHHHHHHTTTTCHHHHHHH
T ss_pred HcCCC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 43311 12356677888899988765444
No 176
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.25 E-value=0.015 Score=58.61 Aligned_cols=104 Identities=17% Similarity=0.239 Sum_probs=49.0
Q ss_pred CCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccch-hhhcCcCCCEEeccCCCCCcccc-cccCCCcCc
Q 037229 295 PTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLPS-RISRLVSLQHLDLSSSGILELPK-ELGFLGNLA 372 (577)
Q Consensus 295 ~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp~-~i~~l~~L~~L~L~~~~i~~lp~-~i~~L~~L~ 372 (577)
..+..|+.+.+..+ ...+....|..+..|+.+.+.. .++.++. .|..+.+|+.+.|.. .++.+.. .|.++.+|+
T Consensus 262 ~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~C~~L~ 337 (394)
T 4gt6_A 262 DSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPE-GITQILDDAFAGCEQLE 337 (394)
T ss_dssp TTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCC
T ss_pred eecccccEEecccc-cceecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCC-cccEehHhHhhCCCCCC
Confidence 34445555554333 2234444455555555555532 2444432 344455555555543 2444433 244555555
Q ss_pred EecccccccccccchHHhcCCCCCcEEEeeee
Q 037229 373 CLNLENTSSHGTITRQLRSNFSKPQVLRMFRF 404 (577)
Q Consensus 373 ~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~ 404 (577)
.+.+..+ ++.++..++.++++|+.+.+.++
T Consensus 338 ~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 338 RIAIPSS--VTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp EEEECTT--CCBCCGGGGTTCTTCCEEEESSC
T ss_pred EEEECcc--cCEEhHhHhhCCCCCCEEEECCc
Confidence 5555432 44555444555555555555443
No 177
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.10 E-value=0.047 Score=53.22 Aligned_cols=169 Identities=13% Similarity=-0.002 Sum_probs=103.0
Q ss_pred CCccccHHHHHHHHHHhhcC----CCceEEEEEeccch----hHHHHHHHhCCCcch---hccCCHHHHHHHHHHhcccc
Q 037229 32 DLTVGLESTFDQVWSCLVEE----EQVGIIGLYGMEGW----IQEQIRRKLGLVDDL---WARKGLEEKAMNIFGILSKE 100 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~----~~~~vv~I~G~gGw----~~~~i~~~l~~~~~~---~~~~~~~~~~~~l~~~L~kr 100 (577)
+++||++..++.+..++... .....+.|+|..|- +.+.+...++..... .......++...+...+.+.
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 91 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANSLEEG 91 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSHHHHHHHHTTTCCTT
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCChHHHHHHHHHhccCC
Confidence 67999999999998887642 23456789999993 777777777543210 11223344444444434466
Q ss_pred EEEEEecCCChh--hhcccCCCCCC------------------CCCCcEEEEEeCchhh-hhcC--CCCceEecCCCCHH
Q 037229 101 FVLCWMMCGSEL--ILTQMGVPVPN------------------PKRMSKVLFTTRFVEV-YGHK--EADEMFRMECLRHE 157 (577)
Q Consensus 101 ~LlVLDdv~~~~--~~~~l~~~~~~------------------~~~gsrIivTTR~~~v-~~~~--~~~~~~~l~~L~~~ 157 (577)
.+|++||+.... ..+.+...+.. ...+.++|.||..... .... .....+.+.+++.+
T Consensus 92 ~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~ 171 (324)
T 1hqc_A 92 DILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPE 171 (324)
T ss_dssp CEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHH
T ss_pred CEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCCHH
Confidence 799999997641 22222111100 0123466666664322 1111 12357899999999
Q ss_pred HHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCchHHHHHHHHH
Q 037229 158 EAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLPLVLVTTARAM 203 (577)
Q Consensus 158 ~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L 203 (577)
+..+++...+..... .--.+....+++.+.|.|-.+..+...+
T Consensus 172 e~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 172 ELAQGVMRDARLLGV---RITEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp HHHHHHHHHHHTTTC---CCCHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC---CCCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 999998887754331 1124667889999999998877665544
No 178
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.73 E-value=0.055 Score=51.66 Aligned_cols=157 Identities=13% Similarity=0.126 Sum_probs=92.3
Q ss_pred CCccccHHHHHHHHHHhhcC------------CCceEEEEEeccc----hhHHHHHHHhCCCcch-----h---ccCCHH
Q 037229 32 DLTVGLESTFDQVWSCLVEE------------EQVGIIGLYGMEG----WIQEQIRRKLGLVDDL-----W---ARKGLE 87 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~------------~~~~vv~I~G~gG----w~~~~i~~~l~~~~~~-----~---~~~~~~ 87 (577)
++++|.++.+++|.+.+... ....-+-|+|..| .+.+.++..++...-. . ......
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~ 96 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGA 96 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCSTTHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhccchHH
Confidence 67999999999999887541 2345688999999 3777788777543210 0 011122
Q ss_pred HHHHHHHHhcc--ccEEEEEecCCCh----------------hhhcccCCCCC--CCCCCcEEEEEeCchhhhh-----c
Q 037229 88 EKAMNIFGILS--KEFVLCWMMCGSE----------------LILTQMGVPVP--NPKRMSKVLFTTRFVEVYG-----H 142 (577)
Q Consensus 88 ~~~~~l~~~L~--kr~LlVLDdv~~~----------------~~~~~l~~~~~--~~~~gsrIivTTR~~~v~~-----~ 142 (577)
.....+..... +..+|++||+... ..+..+...+. ....+..||.||...+... .
T Consensus 97 ~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~ 176 (285)
T 3h4m_A 97 SLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRP 176 (285)
T ss_dssp HHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHST
T ss_pred HHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCC
Confidence 33333444444 5689999999542 11111111111 1223567888887543321 1
Q ss_pred CCCCceEecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCC
Q 037229 143 KEADEMFRMECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGL 192 (577)
Q Consensus 143 ~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~gl 192 (577)
......+.+...+.++..++|...+..........+ ..+++.+.|.
T Consensus 177 ~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~----~~l~~~~~g~ 222 (285)
T 3h4m_A 177 GRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNL----EEIAKMTEGC 222 (285)
T ss_dssp TSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCH----HHHHHHCTTC
T ss_pred CcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCH----HHHHHHcCCC
Confidence 122347899999999999999988754432222233 4566666664
No 179
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.12 E-value=0.032 Score=55.79 Aligned_cols=104 Identities=12% Similarity=0.167 Sum_probs=62.0
Q ss_pred CCCCCccEEeCccCCCCCcchhhcCCCCcccEEEccCCCCCcccc-hhhhcCcCCCEEeccCCCCCccccc-ccCCCcCc
Q 037229 295 PTSPQLLTLFLNINPLSMIGGDLFQFKPCLKVLNLSNSPCLEKLP-SRISRLVSLQHLDLSSSGILELPKE-LGFLGNLA 372 (577)
Q Consensus 295 ~~~~~Lr~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~lp-~~i~~l~~L~~L~L~~~~i~~lp~~-i~~L~~L~ 372 (577)
..+.+|+.+.+..+ +..+....|..+..|+.+.+..+ ++.++ ..+..+.+|+.+.+.. .++.++.. +..+.+|+
T Consensus 214 ~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~ 289 (379)
T 4h09_A 214 SYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLT 289 (379)
T ss_dssp TTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCC
T ss_pred ccccccceeeeccc-eeEEccccccCCccceEEEcCCC--ccEeCccccceeehhccccccc-cceeccccccccccccc
Confidence 44556666666443 44555555666777777766544 44442 2455566667666644 35555443 56666777
Q ss_pred EecccccccccccchHHhcCCCCCcEEEeee
Q 037229 373 CLNLENTSSHGTITRQLRSNFSKPQVLRMFR 403 (577)
Q Consensus 373 ~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~ 403 (577)
.+.+.++ .++.++..++.++.+|+.+.+..
T Consensus 290 ~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 290 KVVMDNS-AIETLEPRVFMDCVKLSSVTLPT 319 (379)
T ss_dssp EEEECCT-TCCEECTTTTTTCTTCCEEECCT
T ss_pred ccccccc-ccceehhhhhcCCCCCCEEEcCc
Confidence 7777655 56666665566777777776653
No 180
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.04 E-value=0.029 Score=46.58 Aligned_cols=14 Identities=21% Similarity=0.309 Sum_probs=5.3
Q ss_pred CCEEeccCCCCCcc
Q 037229 348 LQHLDLSSSGILEL 361 (577)
Q Consensus 348 L~~L~L~~~~i~~l 361 (577)
|++|+|++|.|+.+
T Consensus 33 l~~L~Ls~N~l~~l 46 (130)
T 3rfe_A 33 TTELVLTGNNLTAL 46 (130)
T ss_dssp CSEEECTTSCCSSC
T ss_pred CCEEECCCCcCCcc
Confidence 33333333333333
No 181
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.00 E-value=0.01 Score=54.95 Aligned_cols=164 Identities=7% Similarity=-0.024 Sum_probs=88.4
Q ss_pred CCcccc---HHHHHHHHHHhhcCCCceEEEEEeccc----hhHHHHHHHhCCCcchhccCCHHHHHHHHHHhcc---ccE
Q 037229 32 DLTVGL---ESTFDQVWSCLVEEEQVGIIGLYGMEG----WIQEQIRRKLGLVDDLWARKGLEEKAMNIFGILS---KEF 101 (577)
Q Consensus 32 ~~~vGr---~~~~~~i~~~L~~~~~~~vv~I~G~gG----w~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~---kr~ 101 (577)
++++|. +..++.+..+... .....+.|+|..| .+.+.++..+..........+.......+.+.+. +..
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~-~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASG-DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASISTALLEGLEQFD 106 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHT-CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCGGGGTTGGGSS
T ss_pred hhccCCCCCHHHHHHHHHHHhC-CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHHhccCCC
Confidence 567763 3556666666554 4556788999999 2556666555321110000111111111222232 567
Q ss_pred EEEEecCCChh--h--hcccCCCCCC-CCCC-cEEEEEeCchh---------hhhcCCCCceEecCCCCHHHHHHHHHHh
Q 037229 102 VLCWMMCGSEL--I--LTQMGVPVPN-PKRM-SKVLFTTRFVE---------VYGHKEADEMFRMECLRHEEAWKLFQMK 166 (577)
Q Consensus 102 LlVLDdv~~~~--~--~~~l~~~~~~-~~~g-srIivTTR~~~---------v~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 166 (577)
+||+||++... . .+.+...+.. ...+ .+||+||+... +...+.....+++.+++.++..+++...
T Consensus 107 vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~ 186 (242)
T 3bos_A 107 LICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRR 186 (242)
T ss_dssp EEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHH
T ss_pred EEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHH
Confidence 89999996531 1 2222221110 0112 25788876432 1111112267899999999999999887
Q ss_pred hCCCCCCCCCChhHHHHHHHHHcCCCchHHHHH
Q 037229 167 VGKETMDDHSDIPKLVEIVTKECGGLPLVLVTT 199 (577)
Q Consensus 167 a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 199 (577)
+..... .--.+....+++.+.|.+-.+..+
T Consensus 187 ~~~~~~---~~~~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 187 AAMRGL---QLPEDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp HHHTTC---CCCHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHcCC---CCCHHHHHHHHHHccCCHHHHHHH
Confidence 743221 122466778888999887665443
No 182
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.81 E-value=0.032 Score=46.28 Aligned_cols=54 Identities=13% Similarity=0.114 Sum_probs=45.8
Q ss_pred CEEeccCCCCC--cccccccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeec
Q 037229 349 QHLDLSSSGIL--ELPKELGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFY 405 (577)
Q Consensus 349 ~~L~L~~~~i~--~lp~~i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 405 (577)
..++-++..++ .+|..+. .+|++|+|++| .++.+|.+.+..+++|+.|++.+|.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCC-cCCccChhhhhhccccCEEEecCCC
Confidence 36777777887 8887643 47999999999 8999998878999999999999886
No 183
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.32 E-value=0.71 Score=42.96 Aligned_cols=161 Identities=11% Similarity=-0.000 Sum_probs=88.2
Q ss_pred CCccccHHHHHHHHHHhhcC-----------CCceEEEEEeccc----hhHHHHHHHhCCCcchhcc--------CCHHH
Q 037229 32 DLTVGLESTFDQVWSCLVEE-----------EQVGIIGLYGMEG----WIQEQIRRKLGLVDDLWAR--------KGLEE 88 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~-----------~~~~vv~I~G~gG----w~~~~i~~~l~~~~~~~~~--------~~~~~ 88 (577)
++++|.+..++.+.+++..- ....-+-|+|..| .+.+.++..++...-.... .....
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAA 85 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccChhHH
Confidence 68999999998887765321 2234577999999 3777777777543210000 01111
Q ss_pred HHHHHHHhcc--ccEEEEEecCCChh-----------------hhcccCCCCCC--CCCCcEEEEEeCchhhh--hcC--
Q 037229 89 KAMNIFGILS--KEFVLCWMMCGSEL-----------------ILTQMGVPVPN--PKRMSKVLFTTRFVEVY--GHK-- 143 (577)
Q Consensus 89 ~~~~l~~~L~--kr~LlVLDdv~~~~-----------------~~~~l~~~~~~--~~~gsrIivTTR~~~v~--~~~-- 143 (577)
....+.+... ...+|++||+.... .+..+...+.. ...+..||.||...... ...
T Consensus 86 ~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~ 165 (262)
T 2qz4_A 86 RVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRP 165 (262)
T ss_dssp HHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGST
T ss_pred HHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcC
Confidence 2222333333 57899999997530 01112111111 12355677777654421 111
Q ss_pred -CCCceEecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCch
Q 037229 144 -EADEMFRMECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLPL 194 (577)
Q Consensus 144 -~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPL 194 (577)
.....+.+...+.++-.+++...+.... ...........+++.+.|++-
T Consensus 166 ~R~~~~i~i~~p~~~~r~~il~~~~~~~~--~~~~~~~~~~~l~~~~~g~~~ 215 (262)
T 2qz4_A 166 GRLDRHVFIDLPTLQERREIFEQHLKSLK--LTQSSTFYSQRLAELTPGFSG 215 (262)
T ss_dssp TSCCEEEECCSCCHHHHHHHHHHHHHHTT--CCBTHHHHHHHHHHTCTTCCH
T ss_pred CcCCeEEEeCCcCHHHHHHHHHHHHHhCC--CCcchhhHHHHHHHHCCCCCH
Confidence 2245788999999999999988764322 111222234677888888754
No 184
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.64 E-value=0.46 Score=46.65 Aligned_cols=165 Identities=8% Similarity=-0.044 Sum_probs=93.4
Q ss_pred CCccccHHHHHHHHHHh-hcCCCceEEEEEeccch----hHHHHHHHhCCCcc---------------------------
Q 037229 32 DLTVGLESTFDQVWSCL-VEEEQVGIIGLYGMEGW----IQEQIRRKLGLVDD--------------------------- 79 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L-~~~~~~~vv~I~G~gGw----~~~~i~~~l~~~~~--------------------------- 79 (577)
++++|.+..++.+.+++ ..+.... +.|+|..|- +.+.++..+.....
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~ 92 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPY 92 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSS
T ss_pred HHhcCCHHHHHHHHHHHhhCCCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccc
Confidence 56899999999999988 5433233 899999993 55555554321110
Q ss_pred --hh-----ccCCHHHHHHHHHHhcc---------------ccEEEEEecCCCh--hhhcccCCCCCCCCCCcEEEEEeC
Q 037229 80 --LW-----ARKGLEEKAMNIFGILS---------------KEFVLCWMMCGSE--LILTQMGVPVPNPKRMSKVLFTTR 135 (577)
Q Consensus 80 --~~-----~~~~~~~~~~~l~~~L~---------------kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR 135 (577)
.. ...+.....+.+.+... +.-++|+|++... ...+.+...+.....+.++|++|.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~ 172 (354)
T 1sxj_E 93 HLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCD 172 (354)
T ss_dssp EEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEES
T ss_pred eEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeC
Confidence 00 00111112233333222 3349999999763 222333222222234577888776
Q ss_pred chh-hhhcC-CCCceEecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCchHHHHH
Q 037229 136 FVE-VYGHK-EADEMFRMECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLPLVLVTT 199 (577)
Q Consensus 136 ~~~-v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 199 (577)
+.. +.... .-...+++.+++.++..+.+...+.......+ -.+....|++.++|-+-.+..+
T Consensus 173 ~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~l~~i~~~~~G~~r~a~~~ 236 (354)
T 1sxj_E 173 SMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLE--TKDILKRIAQASNGNLRVSLLM 236 (354)
T ss_dssp CSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEEC--CSHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCC--cHHHHHHHHHHcCCCHHHHHHH
Confidence 532 21111 12367899999999999998887643221111 0256678889999987655443
No 185
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=93.60 E-value=0.17 Score=48.88 Aligned_cols=132 Identities=8% Similarity=0.004 Sum_probs=74.9
Q ss_pred CccccHHHHHHHHHHhhcC---CCceEEEEEeccch----------------------------------------hHHH
Q 037229 33 LTVGLESTFDQVWSCLVEE---EQVGIIGLYGMEGW----------------------------------------IQEQ 69 (577)
Q Consensus 33 ~~vGr~~~~~~i~~~L~~~---~~~~vv~I~G~gGw----------------------------------------~~~~ 69 (577)
.+.|||++.++|...|... +....+-|+|..|= +...
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHH
Confidence 3789999999999888765 56678889999991 4445
Q ss_pred HHHHhCCCcchhccCCHHHHHHHHHHhc---c-ccEEEEEecCCChhhhcccCCCCCC-CCCCcE--EEEEeCchhh---
Q 037229 70 IRRKLGLVDDLWARKGLEEKAMNIFGIL---S-KEFVLCWMMCGSELILTQMGVPVPN-PKRMSK--VLFTTRFVEV--- 139 (577)
Q Consensus 70 i~~~l~~~~~~~~~~~~~~~~~~l~~~L---~-kr~LlVLDdv~~~~~~~~l~~~~~~-~~~gsr--IivTTR~~~v--- 139 (577)
|++++..... ......+.+ ..+.+.+ . +++++|||++....+-+.+...+.+ ....++ ||.++...+.
T Consensus 101 I~~~L~g~~~-~~~~~~~~L-~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~ 178 (318)
T 3te6_A 101 IWFAISKENL-CGDISLEAL-NFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIRE 178 (318)
T ss_dssp HHHHHSCCC---CCCCHHHH-HHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHH
T ss_pred HHHHhcCCCC-CchHHHHHH-HHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchh
Confidence 5555543211 011223333 3334443 3 6789999999764221111111110 011222 3333332211
Q ss_pred ------hhcCCCCceEecCCCCHHHHHHHHHHhh
Q 037229 140 ------YGHKEADEMFRMECLRHEEAWKLFQMKV 167 (577)
Q Consensus 140 ------~~~~~~~~~~~l~~L~~~~~~~Lf~~~a 167 (577)
...++ ...+.+.+++.++-.+++.+++
T Consensus 179 ~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 179 QINIMPSLKAH-FTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp HHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHH
T ss_pred hcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHH
Confidence 11221 1468899999999999988876
No 186
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=93.44 E-value=1.7 Score=42.74 Aligned_cols=165 Identities=13% Similarity=0.026 Sum_probs=93.6
Q ss_pred CCccccHHHHHHHHHHhhc-----------CCCceEEEEEeccc----hhHHHHHHHhCCCcchh---c-----cCCHHH
Q 037229 32 DLTVGLESTFDQVWSCLVE-----------EEQVGIIGLYGMEG----WIQEQIRRKLGLVDDLW---A-----RKGLEE 88 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~-----------~~~~~vv~I~G~gG----w~~~~i~~~l~~~~~~~---~-----~~~~~~ 88 (577)
++++|.+..++.|.+.+.. ....+-|-|+|..| .+.+.++..++...-.. + ......
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~~~~ 163 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEK 163 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSSTTHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccccchHHH
Confidence 5789999999999988753 13456788999999 37777777765431100 0 011223
Q ss_pred HHHHHHHhcc--ccEEEEEecCCCh-------------hhhcccCCCC----CCCCCCcEEEEEeCchhhh---hcCCCC
Q 037229 89 KAMNIFGILS--KEFVLCWMMCGSE-------------LILTQMGVPV----PNPKRMSKVLFTTRFVEVY---GHKEAD 146 (577)
Q Consensus 89 ~~~~l~~~L~--kr~LlVLDdv~~~-------------~~~~~l~~~~----~~~~~gsrIivTTR~~~v~---~~~~~~ 146 (577)
..+.+..... +..+|+||++... ..+..+...+ .....+..||.||...... -.-...
T Consensus 164 ~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~ 243 (357)
T 3d8b_A 164 MVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLV 243 (357)
T ss_dssp HHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCC
T ss_pred HHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCc
Confidence 3334444443 5689999999421 0111221111 1112345566666543221 111234
Q ss_pred ceEecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCC-chHHHHH
Q 037229 147 EMFRMECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGL-PLVLVTT 199 (577)
Q Consensus 147 ~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~gl-PLai~~~ 199 (577)
..+.+...+.++..+++...+...... --.+....+++.+.|+ +-.+..+
T Consensus 244 ~~i~i~~p~~~~r~~il~~~~~~~~~~---l~~~~l~~la~~t~G~s~~dl~~l 294 (357)
T 3d8b_A 244 KRLYIPLPEASARKQIVINLMSKEQCC---LSEEEIEQIVQQSDAFSGADMTQL 294 (357)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTSCBC---CCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred eEEEeCCcCHHHHHHHHHHHHhhcCCC---ccHHHHHHHHHHcCCCCHHHHHHH
Confidence 577888889998888888776432211 1134567788888885 4444444
No 187
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.22 E-value=0.065 Score=47.27 Aligned_cols=42 Identities=19% Similarity=0.250 Sum_probs=32.6
Q ss_pred CCccccHHHHHHHHHHhhcCCCceEEEEEeccc----hhHHHHHHHh
Q 037229 32 DLTVGLESTFDQVWSCLVEEEQVGIIGLYGMEG----WIQEQIRRKL 74 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~~~~~vv~I~G~gG----w~~~~i~~~l 74 (577)
++++||++.++++.+++.. .....+.|+|..| .+.+.++..+
T Consensus 22 ~~~~g~~~~~~~l~~~l~~-~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQR-RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTS-SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhc-CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999887 4445577999999 3555555554
No 188
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=92.86 E-value=1.9 Score=41.67 Aligned_cols=158 Identities=13% Similarity=0.066 Sum_probs=92.5
Q ss_pred CCccccHHHHHHHHHHhhcC-----------CCceEEEEEeccc----hhHHHHHHHhCCCcchh--------ccCCHHH
Q 037229 32 DLTVGLESTFDQVWSCLVEE-----------EQVGIIGLYGMEG----WIQEQIRRKLGLVDDLW--------ARKGLEE 88 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~-----------~~~~vv~I~G~gG----w~~~~i~~~l~~~~~~~--------~~~~~~~ 88 (577)
++++|.++.++.|.+.+... ...+-|-++|..| .+.+.++..++..--.. .....+.
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~ 97 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEK 97 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTGGGHHH
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcccchHHH
Confidence 67999999999999887311 2235688999999 37777777765432100 0112233
Q ss_pred HHHHHHHhcc--ccEEEEEecCCChhh-------------hcccC---CCCCCCCCCcEEEEEeCchhhhh---cCCCCc
Q 037229 89 KAMNIFGILS--KEFVLCWMMCGSELI-------------LTQMG---VPVPNPKRMSKVLFTTRFVEVYG---HKEADE 147 (577)
Q Consensus 89 ~~~~l~~~L~--kr~LlVLDdv~~~~~-------------~~~l~---~~~~~~~~gsrIivTTR~~~v~~---~~~~~~ 147 (577)
..+.+.+... +..+|++|++..... ...+. ..+.....+..||.||....... .-....
T Consensus 98 ~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~ 177 (322)
T 3eie_A 98 LVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFER 177 (322)
T ss_dssp HHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHHCCE
T ss_pred HHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcccCe
Confidence 3444444444 568999999964210 11111 11112234566666776543311 002345
Q ss_pred eEecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCC
Q 037229 148 MFRMECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGL 192 (577)
Q Consensus 148 ~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~gl 192 (577)
.+.+...+.++-.++|..++..... .--......+++.+.|+
T Consensus 178 ~i~~~~p~~~~r~~il~~~~~~~~~---~~~~~~l~~la~~t~g~ 219 (322)
T 3eie_A 178 RIYIPLPDLAARTTMFEINVGDTPC---VLTKEDYRTLGAMTEGY 219 (322)
T ss_dssp EEECCCCCHHHHHHHHHHHHTTCCC---CCCHHHHHHHHHTTTTC
T ss_pred EEEeCCCCHHHHHHHHHHHhccCCC---CCCHHHHHHHHHHcCCC
Confidence 7788889999999999988754321 11133456777888875
No 189
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.40 E-value=0.36 Score=47.34 Aligned_cols=165 Identities=10% Similarity=0.032 Sum_probs=94.7
Q ss_pred CCCccccHHHHHHHHHHhhcCCCceEEEEEeccch----hHHHHHHHhCC------Ccc--h-hccCCHHHHHHHHHHhc
Q 037229 31 SDLTVGLESTFDQVWSCLVEEEQVGIIGLYGMEGW----IQEQIRRKLGL------VDD--L-WARKGLEEKAMNIFGIL 97 (577)
Q Consensus 31 ~~~~vGr~~~~~~i~~~L~~~~~~~vv~I~G~gGw----~~~~i~~~l~~------~~~--~-~~~~~~~~~~~~l~~~L 97 (577)
.++++|+++.++.+..++..+ ...-+.|+|..|- +.+.++..+.. ... . .+......+...+....
T Consensus 36 ~~~i~g~~~~~~~l~~~l~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (353)
T 1sxj_D 36 LDEVTAQDHAVTVLKKTLKSA-NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFA 114 (353)
T ss_dssp TTTCCSCCTTHHHHHHHTTCT-TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHHHHHH
T ss_pred HHHhhCCHHHHHHHHHHHhcC-CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHHHHHHHHh
Confidence 367999999999999998874 2223789999992 44444444321 000 0 01122333322222211
Q ss_pred ----------------c-ccEEEEEecCCCh--hhhcccCCCCCCCCCCcEEEEEeCchh-hhhcC-CCCceEecCCCCH
Q 037229 98 ----------------S-KEFVLCWMMCGSE--LILTQMGVPVPNPKRMSKVLFTTRFVE-VYGHK-EADEMFRMECLRH 156 (577)
Q Consensus 98 ----------------~-kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~~~-v~~~~-~~~~~~~l~~L~~ 156 (577)
. ++-++++|++... ...+.+...+.......++|++|.... +.... .....+.+.+++.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~ 194 (353)
T 1sxj_D 115 RLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDA 194 (353)
T ss_dssp HSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCCCH
T ss_pred hhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEeCCCCH
Confidence 1 3459999998653 223333333322234567777775433 21111 1124788999999
Q ss_pred HHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCchHHHHH
Q 037229 157 EEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLPLVLVTT 199 (577)
Q Consensus 157 ~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 199 (577)
++..+.+...+...... --.+....+++.++|.|-.+..+
T Consensus 195 ~~~~~~l~~~~~~~~~~---i~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 195 SNAIDRLRFISEQENVK---CDDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp HHHHHHHHHHHHTTTCC---CCHHHHHHHHHHTSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 99999888876433211 12467788999999998765433
No 190
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=92.14 E-value=0.2 Score=48.20 Aligned_cols=136 Identities=12% Similarity=0.030 Sum_probs=79.1
Q ss_pred CccccHHHHHHHHHHhhc--------------CCCceEEEEEeccc----hhHHHHHHHhCCC------------cchhc
Q 037229 33 LTVGLESTFDQVWSCLVE--------------EEQVGIIGLYGMEG----WIQEQIRRKLGLV------------DDLWA 82 (577)
Q Consensus 33 ~~vGr~~~~~~i~~~L~~--------------~~~~~vv~I~G~gG----w~~~~i~~~l~~~------------~~~~~ 82 (577)
+++|.+..++.|.+++.. .....-+-|+|..| .+.+.++..+... .....
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 589999999999876642 13344688999999 3555555554210 00000
Q ss_pred cCCHHHHHHHHHHhcc--ccEEEEEecCCC-----------hhhhcccCCCCCCCCCCcEEEEEeCchhhhhc--C----
Q 037229 83 RKGLEEKAMNIFGILS--KEFVLCWMMCGS-----------ELILTQMGVPVPNPKRMSKVLFTTRFVEVYGH--K---- 143 (577)
Q Consensus 83 ~~~~~~~~~~l~~~L~--kr~LlVLDdv~~-----------~~~~~~l~~~~~~~~~gsrIivTTR~~~v~~~--~---- 143 (577)
..-.......+...+. +.-+|++|++.. ......+...+.....+..||.||........ .
T Consensus 112 ~~~~g~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l 191 (309)
T 3syl_A 112 GQYIGHTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGF 191 (309)
T ss_dssp CSSTTCHHHHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTH
T ss_pred hhcccccHHHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHH
Confidence 0001112233445554 667999999972 22233443333333445678888865432110 0
Q ss_pred --CCCceEecCCCCHHHHHHHHHHhhC
Q 037229 144 --EADEMFRMECLRHEEAWKLFQMKVG 168 (577)
Q Consensus 144 --~~~~~~~l~~L~~~~~~~Lf~~~a~ 168 (577)
.....+.+.+++.++-.+++.+.+.
T Consensus 192 ~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 192 RSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp HHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred HHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 1136789999999999999887764
No 191
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=92.13 E-value=3.1 Score=38.88 Aligned_cols=153 Identities=9% Similarity=-0.061 Sum_probs=84.6
Q ss_pred CCccccHHHHHHHHHH-------hhc--CCCceEEEEEeccc----hhHHHHHHHhCCCcchh------ccCCHHH----
Q 037229 32 DLTVGLESTFDQVWSC-------LVE--EEQVGIIGLYGMEG----WIQEQIRRKLGLVDDLW------ARKGLEE---- 88 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~-------L~~--~~~~~vv~I~G~gG----w~~~~i~~~l~~~~~~~------~~~~~~~---- 88 (577)
..++|.+...+++++. +.. .....-+-|+|..| .+.+.++...+...-.. .......
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~~~ 112 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQA 112 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHHHH
Confidence 5688988887777763 321 14567788999999 37777777765431100 1111222
Q ss_pred HHHHHHHhcc-ccEEEEEecCCCh---------------hhhcccCCCCCCCCCCcEEEEEeCchhhhhc---CCC-Cce
Q 037229 89 KAMNIFGILS-KEFVLCWMMCGSE---------------LILTQMGVPVPNPKRMSKVLFTTRFVEVYGH---KEA-DEM 148 (577)
Q Consensus 89 ~~~~l~~~L~-kr~LlVLDdv~~~---------------~~~~~l~~~~~~~~~gsrIivTTR~~~v~~~---~~~-~~~ 148 (577)
+...+..... +..+|++||+... ..+..+............||.||........ .+. ...
T Consensus 113 ~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~ 192 (272)
T 1d2n_A 113 MKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTT 192 (272)
T ss_dssp HHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEE
T ss_pred HHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceE
Confidence 2222223333 6789999998532 1122222222222334557778877655332 111 456
Q ss_pred EecCCCCH-HHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCC
Q 037229 149 FRMECLRH-EEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGL 192 (577)
Q Consensus 149 ~~l~~L~~-~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~gl 192 (577)
+++.+++. ++..+++.... . . -.+....+++.+.|.
T Consensus 193 i~~p~l~~r~~i~~i~~~~~-~----~---~~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 193 IHVPNIATGEQLLEALELLG-N----F---KDKERTTIAQQVKGK 229 (272)
T ss_dssp EECCCEEEHHHHHHHHHHHT-C----S---CHHHHHHHHHHHTTS
T ss_pred EcCCCccHHHHHHHHHHhcC-C----C---CHHHHHHHHHHhcCC
Confidence 88888887 66666655432 1 1 134566777788774
No 192
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=91.88 E-value=1.9 Score=41.83 Aligned_cols=164 Identities=15% Similarity=0.017 Sum_probs=96.4
Q ss_pred CCccccHHHHHHHHHHhhcC----CCceEEEEEeccc----hhHHHHHHHhCCCcch--h-ccCCHHHHHHHHHHhcccc
Q 037229 32 DLTVGLESTFDQVWSCLVEE----EQVGIIGLYGMEG----WIQEQIRRKLGLVDDL--W-ARKGLEEKAMNIFGILSKE 100 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~----~~~~vv~I~G~gG----w~~~~i~~~l~~~~~~--~-~~~~~~~~~~~l~~~L~kr 100 (577)
++++|++..++++..++... .....|-|+|..| .+.+.++..++...-. . ........... .....+.
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 107 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEKSGDLAAI-LTNLSEG 107 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCSHHHHHHH-HHTCCTT
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccchhHHHHH-HHhccCC
Confidence 67999999999999988753 3345678999999 3777777777544211 1 11222222222 2222367
Q ss_pred EEEEEecCCCh--hhhcccCCCCC------------------CCCCCcEEEEEeCchhhh-h--cCCCCceEecCCCCHH
Q 037229 101 FVLCWMMCGSE--LILTQMGVPVP------------------NPKRMSKVLFTTRFVEVY-G--HKEADEMFRMECLRHE 157 (577)
Q Consensus 101 ~LlVLDdv~~~--~~~~~l~~~~~------------------~~~~gsrIivTTR~~~v~-~--~~~~~~~~~l~~L~~~ 157 (577)
.+|+||++... .....+...+. ...++.++|.||...... . .-.....+.+.+++.+
T Consensus 108 ~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~ 187 (338)
T 3pfi_A 108 DILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDS 187 (338)
T ss_dssp CEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHH
T ss_pred CEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHH
Confidence 89999999753 11111111110 011134566666543321 0 1123468999999999
Q ss_pred HHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCchHHHHH
Q 037229 158 EAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLPLVLVTT 199 (577)
Q Consensus 158 ~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 199 (577)
+..+++.+.+..... .--.+....+++.+.|.|-.+..+
T Consensus 188 e~~~il~~~~~~~~~---~~~~~~~~~l~~~~~G~~r~l~~~ 226 (338)
T 3pfi_A 188 ELALILQKAALKLNK---TCEEKAALEIAKRSRSTPRIALRL 226 (338)
T ss_dssp HHHHHHHHHHHHTTC---EECHHHHHHHHHTTTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcCC---CCCHHHHHHHHHHHCcCHHHHHHH
Confidence 999999887643221 112356677888899998555433
No 193
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=91.66 E-value=6.5 Score=37.81 Aligned_cols=157 Identities=15% Similarity=0.070 Sum_probs=92.0
Q ss_pred CCccccHHHHHHHHHHhhcC-----------CCceEEEEEeccc----hhHHHHHHHhCCCcc------hh---ccCCHH
Q 037229 32 DLTVGLESTFDQVWSCLVEE-----------EQVGIIGLYGMEG----WIQEQIRRKLGLVDD------LW---ARKGLE 87 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~-----------~~~~vv~I~G~gG----w~~~~i~~~l~~~~~------~~---~~~~~~ 87 (577)
++++|.++.++.|.+.+... ...+-|-++|..| .+.+.++..+....- .. .....+
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~~g~~~ 91 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESE 91 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSCCSCH
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhhhhHHH
Confidence 67999999999998876421 2236788999999 477888887722110 00 011223
Q ss_pred HHHHHHHHhcc--ccEEEEEecCCChh-------------hhcccCC---CCCCCCCCcEEEEEeCchhh-----hhcCC
Q 037229 88 EKAMNIFGILS--KEFVLCWMMCGSEL-------------ILTQMGV---PVPNPKRMSKVLFTTRFVEV-----YGHKE 144 (577)
Q Consensus 88 ~~~~~l~~~L~--kr~LlVLDdv~~~~-------------~~~~l~~---~~~~~~~gsrIivTTR~~~v-----~~~~~ 144 (577)
...+.+.+..+ +..+|++|++.... ....+.. .+.....+..||.||..... .. .
T Consensus 92 ~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~r--R 169 (322)
T 1xwi_A 92 KLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR--R 169 (322)
T ss_dssp HHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHH--T
T ss_pred HHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHh--h
Confidence 34445555544 77899999997531 0011111 11111234556656654322 22 3
Q ss_pred CCceEecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCc
Q 037229 145 ADEMFRMECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLP 193 (577)
Q Consensus 145 ~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP 193 (577)
....+.+...+.++-.+++..++...... --......+++.+.|+.
T Consensus 170 f~~~i~i~~P~~~~r~~il~~~l~~~~~~---l~~~~l~~la~~t~G~s 215 (322)
T 1xwi_A 170 FEKRIYIPLPEPHARAAMFKLHLGTTQNS---LTEADFRELGRKTDGYS 215 (322)
T ss_dssp CCEEEECCCCCHHHHHHHHHHHHTTCCBC---CCHHHHHHHHHTCTTCC
T ss_pred cCeEEEeCCcCHHHHHHHHHHHHhcCCCC---CCHHHHHHHHHHcCCCC
Confidence 34678888889888889988876433211 11345567888888873
No 194
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.62 E-value=0.2 Score=44.54 Aligned_cols=82 Identities=16% Similarity=0.093 Sum_probs=45.1
Q ss_pred CCCccEEeCccC-CCCCc----chhhcCCCCcccEEEccCCCCCc-----ccchhhhcCcCCCEEeccCCCCC-----cc
Q 037229 297 SPQLLTLFLNIN-PLSMI----GGDLFQFKPCLKVLNLSNSPCLE-----KLPSRISRLVSLQHLDLSSSGIL-----EL 361 (577)
Q Consensus 297 ~~~Lr~L~l~~~-~~~~~----~~~~~~~l~~L~~L~L~~~~~l~-----~lp~~i~~l~~L~~L~L~~~~i~-----~l 361 (577)
-+.|+.|++.++ .+..- -...+..-..|+.|+|++| .+. .+...+..-+.|++|+|++|.|. .+
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 456677777664 33211 1112445566777777777 665 23334445566777777777664 23
Q ss_pred cccccCCCcCcEeccccc
Q 037229 362 PKELGFLGNLACLNLENT 379 (577)
Q Consensus 362 p~~i~~L~~L~~L~l~~~ 379 (577)
-+.+..-+.|++|+|++|
T Consensus 119 a~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHTTTTCCCSEEECCCC
T ss_pred HHHHhhCCceeEEECCCC
Confidence 333444455777777654
No 195
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=91.21 E-value=0.67 Score=44.89 Aligned_cols=165 Identities=8% Similarity=-0.072 Sum_probs=95.9
Q ss_pred CCccccHHHHHHHHHHhhcCCCceEEEEEeccch----hHHHHHHHhCCCcch--hccCCHHHHHHHHHHhcc------c
Q 037229 32 DLTVGLESTFDQVWSCLVEEEQVGIIGLYGMEGW----IQEQIRRKLGLVDDL--WARKGLEEKAMNIFGILS------K 99 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~~~~~vv~I~G~gGw----~~~~i~~~l~~~~~~--~~~~~~~~~~~~l~~~L~------k 99 (577)
++++|.+..++.+.+++..+....++-+.|..|- +.+.+++.++..--. ......+.+...+.+... +
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~ 105 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCKIDFVRGPLTNFASAASFDGR 105 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCCHHHHHTHHHHHHHBCCCSSC
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccCHHHHHHHHHHHHhhcccCCC
Confidence 6799999999999999987544467778887873 777777777432111 112234444444444332 4
Q ss_pred cEEEEEecCCChh---hhcccCCCCCCCCCCcEEEEEeCchhh-----hhcCCCCceEecCCCCHHHHHHH-------HH
Q 037229 100 EFVLCWMMCGSEL---ILTQMGVPVPNPKRMSKVLFTTRFVEV-----YGHKEADEMFRMECLRHEEAWKL-------FQ 164 (577)
Q Consensus 100 r~LlVLDdv~~~~---~~~~l~~~~~~~~~gsrIivTTR~~~v-----~~~~~~~~~~~l~~L~~~~~~~L-------f~ 164 (577)
+-++++||+.... ..+.+...+.....+.++|+||....- ... ...+++++++.++-.++ +.
T Consensus 106 ~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR---~~~i~~~~~~~~e~~~il~~~~~~l~ 182 (324)
T 3u61_B 106 QKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSR---CRVITFGQPTDEDKIEMMKQMIRRLT 182 (324)
T ss_dssp EEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHH---SEEEECCCCCHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhh---CcEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 6799999998643 333333322222235678888775441 121 24789999998874333 22
Q ss_pred HhhCCCCCCCCCChhHHHHHHHHHcCCCch-HHHHHHH
Q 037229 165 MKVGKETMDDHSDIPKLVEIVTKECGGLPL-VLVTTAR 201 (577)
Q Consensus 165 ~~a~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~g~ 201 (577)
..+.......++ .+....+++.++|-+- |+..+-.
T Consensus 183 ~~~~~~~~~~~~--~~~~~~l~~~~~gd~R~a~~~L~~ 218 (324)
T 3u61_B 183 EICKHEGIAIAD--MKVVAALVKKNFPDFRKTIGELDS 218 (324)
T ss_dssp HHHHHHTCCBSC--HHHHHHHHHHTCSCTTHHHHHHHH
T ss_pred HHHHHcCCCCCc--HHHHHHHHHhCCCCHHHHHHHHHH
Confidence 222221111111 2667778888888654 4433333
No 196
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.16 E-value=1 Score=46.96 Aligned_cols=165 Identities=10% Similarity=0.028 Sum_probs=95.5
Q ss_pred CCccccHHHHHHHHHHhhcC----------------CCceEEEEEeccch----hHHHHHHHhCCCcchh---ccCCHHH
Q 037229 32 DLTVGLESTFDQVWSCLVEE----------------EQVGIIGLYGMEGW----IQEQIRRKLGLVDDLW---ARKGLEE 88 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~----------------~~~~vv~I~G~gGw----~~~~i~~~l~~~~~~~---~~~~~~~ 88 (577)
++++|++..++++.+|+... +..+.+-|+|..|- +.+.++..++...-.. +......
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~~~~ 118 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTL 118 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCHHH
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcchHHH
Confidence 67899999999999999751 13468899999993 6667777664321100 1112222
Q ss_pred HHHHHHHh------------------cc-ccEEEEEecCCChh-----hhcccCCCCCCCCCCcEEEEEeCchh---hhh
Q 037229 89 KAMNIFGI------------------LS-KEFVLCWMMCGSEL-----ILTQMGVPVPNPKRMSKVLFTTRFVE---VYG 141 (577)
Q Consensus 89 ~~~~l~~~------------------L~-kr~LlVLDdv~~~~-----~~~~l~~~~~~~~~gsrIivTTR~~~---v~~ 141 (577)
+...+... .. ++.+|++|++.... .+..+...+.. .+..||+++.+.. +..
T Consensus 119 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~~~~~l~~ 196 (516)
T 1sxj_A 119 LNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNERNLPKMRP 196 (516)
T ss_dssp HHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCTTSSTTGG
T ss_pred HHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCCCCccchh
Confidence 22222211 12 67899999996431 12222211111 2334666655432 222
Q ss_pred cCCCCceEecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCC-CchHHHHHHH
Q 037229 142 HKEADEMFRMECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGG-LPLVLVTTAR 201 (577)
Q Consensus 142 ~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~g-lPLai~~~g~ 201 (577)
.......+.+.+++.++..+.+...+........+ +....|++.++| ++-++..+..
T Consensus 197 l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~---~~l~~la~~s~GdiR~~i~~L~~ 254 (516)
T 1sxj_A 197 FDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDP---NVIDRLIQTTRGDIRQVINLLST 254 (516)
T ss_dssp GTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCT---THHHHHHHHTTTCHHHHHHHHTH
T ss_pred hHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHcCCcHHHHHHHHHH
Confidence 22234578999999999999888776543322222 346678888998 5555555543
No 197
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=90.96 E-value=2 Score=43.62 Aligned_cols=164 Identities=10% Similarity=0.018 Sum_probs=94.0
Q ss_pred CCCccccHHHH---HHHHHHhhcCCCceEEEEEeccch----hHHHHHHHhCCCcchh--ccCCHHHHH---HHHHHhc-
Q 037229 31 SDLTVGLESTF---DQVWSCLVEEEQVGIIGLYGMEGW----IQEQIRRKLGLVDDLW--ARKGLEEKA---MNIFGIL- 97 (577)
Q Consensus 31 ~~~~vGr~~~~---~~i~~~L~~~~~~~vv~I~G~gGw----~~~~i~~~l~~~~~~~--~~~~~~~~~---~~l~~~L- 97 (577)
.+++||.+..+ ..+...+.. +.+..+-|+|..|- +.+.|...+....... .......+. .......
T Consensus 25 l~~ivGq~~~~~~~~~L~~~i~~-~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~~~~~ir~~~~~a~~~~~ 103 (447)
T 3pvs_A 25 LAQYIGQQHLLAAGKPLPRAIEA-GHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRN 103 (447)
T ss_dssp TTTCCSCHHHHSTTSHHHHHHHH-TCCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHhCCcHHHHhchHHHHHHHHc-CCCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccCCHHHHHHHHHHHHHhhh
Confidence 36799999988 777777777 56678889999993 7777777765432110 122233222 2222222
Q ss_pred c-ccEEEEEecCCCh--hhhcccCCCCCCCCCCcEEEE-EeCchhh---hhcCCCCceEecCCCCHHHHHHHHHHhhCCC
Q 037229 98 S-KEFVLCWMMCGSE--LILTQMGVPVPNPKRMSKVLF-TTRFVEV---YGHKEADEMFRMECLRHEEAWKLFQMKVGKE 170 (577)
Q Consensus 98 ~-kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIiv-TTR~~~v---~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~ 170 (577)
. ++.+|++|++... .+.+.+...+.. + ...+|. ||.+... .....-..++.+.+++.++..+++.+.+...
T Consensus 104 ~~~~~iLfIDEI~~l~~~~q~~LL~~le~-~-~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~ 181 (447)
T 3pvs_A 104 AGRRTILFVDEVHRFNKSQQDAFLPHIED-G-TITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDK 181 (447)
T ss_dssp TTCCEEEEEETTTCC------CCHHHHHT-T-SCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCT
T ss_pred cCCCcEEEEeChhhhCHHHHHHHHHHHhc-C-ceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHH
Confidence 2 6789999999764 334444333322 1 233443 4444321 1111223478899999999999988876431
Q ss_pred CC----CCCCChhHHHHHHHHHcCCCchHHH
Q 037229 171 TM----DDHSDIPKLVEIVTKECGGLPLVLV 197 (577)
Q Consensus 171 ~~----~~~~~~~~~~~~i~~~c~glPLai~ 197 (577)
.. ....--.+....+++.+.|-+-.+.
T Consensus 182 ~~~~~~~~~~i~~~al~~L~~~~~Gd~R~ll 212 (447)
T 3pvs_A 182 TRGYGGQDIVLPDETRRAIAELVNGDARRAL 212 (447)
T ss_dssp TTSSTTSSEECCHHHHHHHHHHHCSCHHHHH
T ss_pred hhhhccccCcCCHHHHHHHHHHCCCCHHHHH
Confidence 10 0011223566778888888765544
No 198
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=90.32 E-value=8.9 Score=37.97 Aligned_cols=165 Identities=10% Similarity=0.001 Sum_probs=92.4
Q ss_pred CCccccHHHHHHHHHHhhcC-----------CCceEEEEEeccc----hhHHHHHHHhCCCcchhc--------cCCHHH
Q 037229 32 DLTVGLESTFDQVWSCLVEE-----------EQVGIIGLYGMEG----WIQEQIRRKLGLVDDLWA--------RKGLEE 88 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~-----------~~~~vv~I~G~gG----w~~~~i~~~l~~~~~~~~--------~~~~~~ 88 (577)
++++|.+..++.|.+++... ....-|-|+|..| .+.+.|+..++..--... ......
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~ 194 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEK 194 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-------CHH
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhccccchHHH
Confidence 67899999999999987321 2245788999999 377777777654311000 001122
Q ss_pred HHHHHHHhcc--ccEEEEEecCCCh-------------hhhcccCCCC---CC-CCCCcEEEEEeCchhhh---hcCCCC
Q 037229 89 KAMNIFGILS--KEFVLCWMMCGSE-------------LILTQMGVPV---PN-PKRMSKVLFTTRFVEVY---GHKEAD 146 (577)
Q Consensus 89 ~~~~l~~~L~--kr~LlVLDdv~~~-------------~~~~~l~~~~---~~-~~~gsrIivTTR~~~v~---~~~~~~ 146 (577)
....+.+... ...+|+||++... .....+...+ .. ......||.||...... -.-...
T Consensus 195 ~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~ 274 (389)
T 3vfd_A 195 LVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFI 274 (389)
T ss_dssp HHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHTTCC
T ss_pred HHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHcCcc
Confidence 3334444443 5689999999532 0011111111 11 12234566566543221 111233
Q ss_pred ceEecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCch-HHHHH
Q 037229 147 EMFRMECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLPL-VLVTT 199 (577)
Q Consensus 147 ~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~ 199 (577)
..+.+...+.++-.+++...+..... .--.+....+++.+.|+.- ++..+
T Consensus 275 ~~i~i~~p~~~~r~~il~~~~~~~~~---~l~~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 275 KRVYVSLPNEETRLLLLKNLLCKQGS---PLTQKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp EEEECCCCCHHHHHHHHHHHHTTSCC---CSCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred eEEEcCCcCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 56888889999999999887754321 1123456778888888654 44443
No 199
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=90.00 E-value=5.2 Score=39.16 Aligned_cols=157 Identities=14% Similarity=0.098 Sum_probs=90.1
Q ss_pred CCccccHHHHHHHHHHhhcC-----------CCceEEEEEeccc----hhHHHHHHHhCCCcchhc--------cCCHHH
Q 037229 32 DLTVGLESTFDQVWSCLVEE-----------EQVGIIGLYGMEG----WIQEQIRRKLGLVDDLWA--------RKGLEE 88 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~-----------~~~~vv~I~G~gG----w~~~~i~~~l~~~~~~~~--------~~~~~~ 88 (577)
++++|.+..++.|.+.+... ...+-|-++|..| .+.+.++..++...-... ....+.
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~~g~~~~ 130 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEK 130 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC---CHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhhcchHHH
Confidence 67999999999999877421 1223477899999 377777777654321000 011122
Q ss_pred HHHHHHHhcc--ccEEEEEecCCChh-------------hhcccCCCC---CCCCCCcEEEEEeCchh-----hhhcCCC
Q 037229 89 KAMNIFGILS--KEFVLCWMMCGSEL-------------ILTQMGVPV---PNPKRMSKVLFTTRFVE-----VYGHKEA 145 (577)
Q Consensus 89 ~~~~l~~~L~--kr~LlVLDdv~~~~-------------~~~~l~~~~---~~~~~gsrIivTTR~~~-----v~~~~~~ 145 (577)
..+.+..... +..+|++|++.... ....+...+ .....+..||.||.... +.. ..
T Consensus 131 ~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~r--Rf 208 (355)
T 2qp9_X 131 LVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RF 208 (355)
T ss_dssp HHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHH--TC
T ss_pred HHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHc--cc
Confidence 3334444444 67899999997421 011111111 11233556666776442 222 34
Q ss_pred CceEecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCc
Q 037229 146 DEMFRMECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLP 193 (577)
Q Consensus 146 ~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP 193 (577)
...+.+...+.++-.+++..++....... -......+++.+.|+.
T Consensus 209 ~~~i~i~~P~~~~r~~il~~~l~~~~~~~---~~~~l~~la~~t~G~s 253 (355)
T 2qp9_X 209 ERRIYIPLPDLAARTTMFEINVGDTPSVL---TKEDYRTLGAMTEGYS 253 (355)
T ss_dssp CEEEECCCCCHHHHHHHHHHHHTTSCBCC---CHHHHHHHHHHTTTCC
T ss_pred CEEEEeCCcCHHHHHHHHHHHHhhCCCCC---CHHHHHHHHHHcCCCC
Confidence 56778888999999999988775432111 1334567888888853
No 200
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=89.96 E-value=0.29 Score=43.50 Aligned_cols=119 Identities=13% Similarity=-0.006 Sum_probs=74.0
Q ss_pred hcCCCCcccEEEccCCCCCc-----ccchhhhcCcCCCEEeccCCCCC-----cccccccCCCcCcEecccccccccccc
Q 037229 317 LFQFKPCLKVLNLSNSPCLE-----KLPSRISRLVSLQHLDLSSSGIL-----ELPKELGFLGNLACLNLENTSSHGTIT 386 (577)
Q Consensus 317 ~~~~l~~L~~L~L~~~~~l~-----~lp~~i~~l~~L~~L~L~~~~i~-----~lp~~i~~L~~L~~L~l~~~~~l~~lp 386 (577)
+...-+.|+.|+|+++..+. .+-..+..-..|+.|+|++|.|. .+-..+..=+.|++|+|++| .+..--
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~G 114 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLTPEL 114 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC-cCCHHH
Confidence 35667889999999742554 24455666789999999999876 23334445578999999998 554321
Q ss_pred h----HHhcCCCCCcEEEeeeecCcccccccccCCccCcccccccccCCccCceeEEEecC
Q 037229 387 R----QLRSNFSKPQVLRMFRFYGKAQYMKADSLPFGGSEFLVEQLCCLKHLNVFSITLKS 443 (577)
Q Consensus 387 ~----~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~L~l~~~~ 443 (577)
. ..+..-+.|++|++.++....++- .......+.+..-+.|..|+++++.
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~-------~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQRQSVLGN-------QVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCCSSCCCCH-------HHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHhhCCceeEEECCCCcCcCcCH-------HHHHHHHHHHHhCCCcCeEeccCCC
Confidence 1 124556679999998653100000 0011234455666778888876554
No 201
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=89.83 E-value=11 Score=38.01 Aligned_cols=159 Identities=14% Similarity=0.111 Sum_probs=90.3
Q ss_pred CCccccHHHHHHHHHHhhc---------C--CCceEEEEEeccc----hhHHHHHHHhCCCcc-hhccCC--------HH
Q 037229 32 DLTVGLESTFDQVWSCLVE---------E--EQVGIIGLYGMEG----WIQEQIRRKLGLVDD-LWARKG--------LE 87 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~---------~--~~~~vv~I~G~gG----w~~~~i~~~l~~~~~-~~~~~~--------~~ 87 (577)
++++|.+..++.|.+.+.. + ...+-|-++|..| .+.+.++..+....- .....+ .+
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~~g~~~ 213 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESE 213 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---------CC
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhhcchHH
Confidence 6789999999999987732 1 2346788999999 377777777622110 000000 01
Q ss_pred HHHHHHHHhcc--ccEEEEEecCCCh-------------hhhcccCCCCCC---CCCCcEEEEEeCchhhhh---cCCCC
Q 037229 88 EKAMNIFGILS--KEFVLCWMMCGSE-------------LILTQMGVPVPN---PKRMSKVLFTTRFVEVYG---HKEAD 146 (577)
Q Consensus 88 ~~~~~l~~~L~--kr~LlVLDdv~~~-------------~~~~~l~~~~~~---~~~gsrIivTTR~~~v~~---~~~~~ 146 (577)
.....+.+... +..+|++|++... .....+...+.. ...+..||.||....... .-...
T Consensus 214 ~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~ 293 (444)
T 2zan_A 214 KLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFE 293 (444)
T ss_dssp CTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCC
T ss_pred HHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcc
Confidence 12233334333 6789999999753 011222222221 234566776776543211 11334
Q ss_pred ceEecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCc
Q 037229 147 EMFRMECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLP 193 (577)
Q Consensus 147 ~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP 193 (577)
..+.+...+.++-.++|..++....... -......+++.+.|+.
T Consensus 294 ~~i~i~~P~~~~r~~il~~~l~~~~~~l---~~~~l~~la~~t~G~s 337 (444)
T 2zan_A 294 KRIYIPLPEAHARAAMFRLHLGSTQNSL---TEADFQELGRKTDGYS 337 (444)
T ss_dssp EEEECCCCCHHHHHHHHHHHHTTSCEEC---CHHHHHHHHHHTTTCC
T ss_pred eEEEeCCcCHHHHHHHHHHHHhcCCCCC---CHHHHHHHHHHcCCCC
Confidence 5778888888888888888774432111 1234566778888853
No 202
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=88.03 E-value=18 Score=34.02 Aligned_cols=163 Identities=11% Similarity=-0.005 Sum_probs=93.8
Q ss_pred CCccccHHHHHHHHHHhhcC-----------CCceEEEEEeccc----hhHHHHHHHhCCCcch--------hccCCHHH
Q 037229 32 DLTVGLESTFDQVWSCLVEE-----------EQVGIIGLYGMEG----WIQEQIRRKLGLVDDL--------WARKGLEE 88 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~-----------~~~~vv~I~G~gG----w~~~~i~~~l~~~~~~--------~~~~~~~~ 88 (577)
++++|.+..++.+.+++... ....-+.|+|..| .+.+.++..++..--. ........
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~~~~~~ 100 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEK 100 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSCSCHHH
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcccchHHH
Confidence 67999999999999887431 2346788999999 3777777776532100 01122344
Q ss_pred HHHHHHHhcc--ccEEEEEecCCChhh-------------hcccC---CCCCC--CCCCcEEEEEeCchh-----hhhcC
Q 037229 89 KAMNIFGILS--KEFVLCWMMCGSELI-------------LTQMG---VPVPN--PKRMSKVLFTTRFVE-----VYGHK 143 (577)
Q Consensus 89 ~~~~l~~~L~--kr~LlVLDdv~~~~~-------------~~~l~---~~~~~--~~~gsrIivTTR~~~-----v~~~~ 143 (577)
..+.+..... +..+|++|++..... ...+. ..++. .+.+..||.||.... +..
T Consensus 101 ~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~-- 178 (297)
T 3b9p_A 101 LVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR-- 178 (297)
T ss_dssp HHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHH--
T ss_pred HHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHh--
Confidence 4444444444 678999999954200 00110 11111 123456666776543 222
Q ss_pred CCCceEecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCch-HHHHH
Q 037229 144 EADEMFRMECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLPL-VLVTT 199 (577)
Q Consensus 144 ~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~ 199 (577)
.....+.+...+.++-..++...+..... .--.+....+++.+.|++- ++..+
T Consensus 179 R~~~~i~~~~p~~~~r~~il~~~~~~~~~---~~~~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 179 RFTKRVYVSLPDEQTRELLLNRLLQKQGS---PLDTEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp HCCEEEECCCCCHHHHHHHHHHHHGGGSC---CSCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred hCCeEEEeCCcCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 23356777778888888888776643221 1113456778888999875 44433
No 203
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=88.01 E-value=10 Score=35.94 Aligned_cols=158 Identities=13% Similarity=0.107 Sum_probs=87.3
Q ss_pred CCccccHHHHHHHHHHhhcC------------CCceEEEEEeccc----hhHHHHHHHhCCCcchhc---------cCCH
Q 037229 32 DLTVGLESTFDQVWSCLVEE------------EQVGIIGLYGMEG----WIQEQIRRKLGLVDDLWA---------RKGL 86 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~------------~~~~vv~I~G~gG----w~~~~i~~~l~~~~~~~~---------~~~~ 86 (577)
++++|.+..++++.+++... ...+.|.|+|..| .+.+.++..++...-... ....
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~g~~~ 94 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESE 94 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHHTTCT
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhcCchH
Confidence 67999999999998877531 3456788999999 366677766643211000 0111
Q ss_pred HHHHHHHHHhc-c-ccEEEEEecCCChh----------------hhcccCCCCC--CCCCCcEEEEEeCchhhhh--cC-
Q 037229 87 EEKAMNIFGIL-S-KEFVLCWMMCGSEL----------------ILTQMGVPVP--NPKRMSKVLFTTRFVEVYG--HK- 143 (577)
Q Consensus 87 ~~~~~~l~~~L-~-kr~LlVLDdv~~~~----------------~~~~l~~~~~--~~~~gsrIivTTR~~~v~~--~~- 143 (577)
.. ...+.+.. . ...+|++|++.... ....+...+. ....+..||.||...+... ..
T Consensus 95 ~~-~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r 173 (301)
T 3cf0_A 95 AN-VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILR 173 (301)
T ss_dssp TH-HHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGS
T ss_pred HH-HHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhc
Confidence 11 22222222 3 56899999996421 0111111110 1123566777776554321 11
Q ss_pred --CCCceEecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCch
Q 037229 144 --EADEMFRMECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLPL 194 (577)
Q Consensus 144 --~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPL 194 (577)
.-...+.+...+.++-.+++...+..........+. .++..+.|+|=
T Consensus 174 ~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~----~la~~~~g~sg 222 (301)
T 3cf0_A 174 PGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLE----FLAKMTNGFSG 222 (301)
T ss_dssp TTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHH----HHHHTCSSCCH
T ss_pred CCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHH----HHHHHcCCCCH
Confidence 234578899999998888887776433212222233 34555666653
No 204
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=87.61 E-value=9.5 Score=36.85 Aligned_cols=151 Identities=10% Similarity=0.030 Sum_probs=88.5
Q ss_pred HHHHHHHHHHhhcCCCceEEEEEeccch----hHHHHHHHhCCCcc---------------------h---h------cc
Q 037229 38 ESTFDQVWSCLVEEEQVGIIGLYGMEGW----IQEQIRRKLGLVDD---------------------L---W------AR 83 (577)
Q Consensus 38 ~~~~~~i~~~L~~~~~~~vv~I~G~gGw----~~~~i~~~l~~~~~---------------------~---~------~~ 83 (577)
++..+.+.+.+..+.-...+-++|..|. +.+.+++.+..... + . ..
T Consensus 8 ~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~ 87 (334)
T 1a5t_A 8 RPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNT 87 (334)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSS
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCCC
Confidence 5556667777766444457888999993 55555555543210 0 0 11
Q ss_pred CCHHHHHHHHHHhcc------ccEEEEEecCCCh--hhhcccCCCCCCCCCCcEEEEEeCchh-hhhcC-CCCceEecCC
Q 037229 84 KGLEEKAMNIFGILS------KEFVLCWMMCGSE--LILTQMGVPVPNPKRMSKVLFTTRFVE-VYGHK-EADEMFRMEC 153 (577)
Q Consensus 84 ~~~~~~~~~l~~~L~------kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~~~-v~~~~-~~~~~~~l~~ 153 (577)
...+.+ +.+.+.+. ++-++|+|++..- ...+.+...+.....+..+|++|.+.+ +.... .-...+++.+
T Consensus 88 ~~i~~i-r~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~ 166 (334)
T 1a5t_A 88 LGVDAV-REVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAP 166 (334)
T ss_dssp BCHHHH-HHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCC
T ss_pred CCHHHH-HHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCCC
Confidence 233333 34444443 4678999999753 233344333333344677777776543 32221 2235799999
Q ss_pred CCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCchHHH
Q 037229 154 LRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLPLVLV 197 (577)
Q Consensus 154 L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 197 (577)
++.++..+.+..... --.+....+++.++|.|..+.
T Consensus 167 ~~~~~~~~~L~~~~~--------~~~~~~~~l~~~s~G~~r~a~ 202 (334)
T 1a5t_A 167 PPEQYAVTWLSREVT--------MSQDALLAALRLSAGSPGAAL 202 (334)
T ss_dssp CCHHHHHHHHHHHCC--------CCHHHHHHHHHHTTTCHHHHH
T ss_pred CCHHHHHHHHHHhcC--------CCHHHHHHHHHHcCCCHHHHH
Confidence 999999998887651 013455678889999886553
No 205
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=84.07 E-value=2.9 Score=36.05 Aligned_cols=42 Identities=21% Similarity=0.218 Sum_probs=33.0
Q ss_pred CCccccHHHHHHHHHHhhcCCCceEEEEEeccc----hhHHHHHHHh
Q 037229 32 DLTVGLESTFDQVWSCLVEEEQVGIIGLYGMEG----WIQEQIRRKL 74 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~~~~~vv~I~G~gG----w~~~~i~~~l 74 (577)
++++|++..++.+.+.+.. .....+-|+|..| .+.+.++..+
T Consensus 22 ~~~~g~~~~~~~l~~~l~~-~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSR-RTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTS-SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhC-CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999987 4445567999999 3666666665
No 206
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=83.85 E-value=6.1 Score=38.63 Aligned_cols=48 Identities=4% Similarity=0.021 Sum_probs=32.8
Q ss_pred ceEecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcC-CCchHHH
Q 037229 147 EMFRMECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECG-GLPLVLV 197 (577)
Q Consensus 147 ~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~-glPLai~ 197 (577)
..+.+.+++.++..+++...+..... .--.+....+++.+. |.|-.+.
T Consensus 252 ~~i~~~~~~~~e~~~il~~~~~~~~~---~~~~~~l~~l~~~~~~G~~r~~~ 300 (368)
T 3uk6_A 252 LIVSTTPYSEKDTKQILRIRCEEEDV---EMSEDAYTVLTRIGLETSLRYAI 300 (368)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHHTTC---CBCHHHHHHHHHHHHHSCHHHHH
T ss_pred cEEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHhcCCCHHHHH
Confidence 35799999999999999987643321 112356677888887 7665443
No 207
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=83.83 E-value=3.7 Score=41.58 Aligned_cols=163 Identities=10% Similarity=-0.018 Sum_probs=86.1
Q ss_pred CCcc-ccH--HHHHHHHHHhhcCCCceEEEEEeccch----hHHHHHHHhCCC--cchhccCCHHHH----HH-------
Q 037229 32 DLTV-GLE--STFDQVWSCLVEEEQVGIIGLYGMEGW----IQEQIRRKLGLV--DDLWARKGLEEK----AM------- 91 (577)
Q Consensus 32 ~~~v-Gr~--~~~~~i~~~L~~~~~~~vv~I~G~gGw----~~~~i~~~l~~~--~~~~~~~~~~~~----~~------- 91 (577)
+++| |.. .....+...........-+.|+|..|- +.+.|+..+... ....-..+.... ..
T Consensus 105 d~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~ 184 (440)
T 2z4s_A 105 ENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKL 184 (440)
T ss_dssp GGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCH
T ss_pred hhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccH
Confidence 3455 643 333444444433222567889999992 555555544110 000011111111 11
Q ss_pred -HHHHhcc-ccEEEEEecCCChh----hhcccCCCCCC-CCCCcEEEEEeCch---------hhhhcCCCCceEecCCCC
Q 037229 92 -NIFGILS-KEFVLCWMMCGSEL----ILTQMGVPVPN-PKRMSKVLFTTRFV---------EVYGHKEADEMFRMECLR 155 (577)
Q Consensus 92 -~l~~~L~-kr~LlVLDdv~~~~----~~~~l~~~~~~-~~~gsrIivTTR~~---------~v~~~~~~~~~~~l~~L~ 155 (577)
.+.+.+. +.-+|++||+.... ..+.+...+.. ...|..||+||... .+...+.....+.+++++
T Consensus 185 ~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~ 264 (440)
T 2z4s_A 185 NEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_dssp HHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCC
T ss_pred HHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCC
Confidence 2223334 46799999996431 12223222211 13467899998762 222333334578899999
Q ss_pred HHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCchHHH
Q 037229 156 HEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLPLVLV 197 (577)
Q Consensus 156 ~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 197 (577)
.++-.+++.+.+.......++ +....|++.+.|.+-.+.
T Consensus 265 ~e~r~~iL~~~~~~~~~~i~~---e~l~~la~~~~gn~R~l~ 303 (440)
T 2z4s_A 265 EETRKSIARKMLEIEHGELPE---EVLNFVAENVDDNLRRLR 303 (440)
T ss_dssp HHHHHHHHHHHHHHHTCCCCT---THHHHHHHHCCSCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCH---HHHHHHHHhcCCCHHHHH
Confidence 999999998877432212222 346677888888775443
No 208
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=83.38 E-value=4.1 Score=39.17 Aligned_cols=155 Identities=9% Similarity=0.045 Sum_probs=81.5
Q ss_pred CCcc-c--cHHHHHHHHHHhhcC-CCceEEEEEeccc----hhHHHHHHHh---CCCcchhccCCHHHHH----HHHH--
Q 037229 32 DLTV-G--LESTFDQVWSCLVEE-EQVGIIGLYGMEG----WIQEQIRRKL---GLVDDLWARKGLEEKA----MNIF-- 94 (577)
Q Consensus 32 ~~~v-G--r~~~~~~i~~~L~~~-~~~~vv~I~G~gG----w~~~~i~~~l---~~~~~~~~~~~~~~~~----~~l~-- 94 (577)
+++| | .......+..+.... .....+.|+|..| .+.+.++..+ +..- -..+..... ..+.
T Consensus 11 ~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~---~~i~~~~~~~~~~~~~~~~ 87 (324)
T 1l8q_A 11 ENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRV---IYSSADDFAQAMVEHLKKG 87 (324)
T ss_dssp SSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCE---EEEEHHHHHHHHHHHHHHT
T ss_pred ccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEE---EEEEHHHHHHHHHHHHHcC
Confidence 4454 4 333444555555443 2346788999999 3666666655 2221 111111111 1111
Q ss_pred ------HhccccEEEEEecCCChh---h-hcccCCCCCC-CCCCcEEEEEeCch---------hhhhcCCCCceEecCCC
Q 037229 95 ------GILSKEFVLCWMMCGSEL---I-LTQMGVPVPN-PKRMSKVLFTTRFV---------EVYGHKEADEMFRMECL 154 (577)
Q Consensus 95 ------~~L~kr~LlVLDdv~~~~---~-~~~l~~~~~~-~~~gsrIivTTR~~---------~v~~~~~~~~~~~l~~L 154 (577)
+.+.+.-+|++||+.... . .+.+...+.. ...|.+||+||... .+...+.....+++++
T Consensus 88 ~~~~~~~~~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~- 166 (324)
T 1l8q_A 88 TINEFRNMYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL- 166 (324)
T ss_dssp CHHHHHHHHHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-
T ss_pred cHHHHHHHhcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-
Confidence 111135699999996532 1 2222222211 12356788888632 1222223335789999
Q ss_pred CHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCch
Q 037229 155 RHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLPL 194 (577)
Q Consensus 155 ~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPL 194 (577)
+.++..+++...+....... -.+....+++.+ |..-
T Consensus 167 ~~~e~~~il~~~~~~~~~~l---~~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 167 DNKTRFKIIKEKLKEFNLEL---RKEVIDYLLENT-KNVR 202 (324)
T ss_dssp CHHHHHHHHHHHHHHTTCCC---CHHHHHHHHHHC-SSHH
T ss_pred CHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHhC-CCHH
Confidence 99999999988874332111 145567777888 6543
No 209
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=83.20 E-value=9.7 Score=36.80 Aligned_cols=160 Identities=11% Similarity=0.054 Sum_probs=90.6
Q ss_pred CCccccHHHHHHHHHHhhcCCCceEEEEEeccc----hhHHHHHHHhCCCcc--------hhccCCHHHHHHHHHHhc--
Q 037229 32 DLTVGLESTFDQVWSCLVEEEQVGIIGLYGMEG----WIQEQIRRKLGLVDD--------LWARKGLEEKAMNIFGIL-- 97 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~~~~~vv~I~G~gG----w~~~~i~~~l~~~~~--------~~~~~~~~~~~~~l~~~L-- 97 (577)
++++|.+..++.+..++..+ .+.-+.++|..| -+.+.++..+..... ..+....+.+.+.+....
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g-~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~~i~~~~~~ 103 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEG-KLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFAST 103 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTT-CCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHHHHHHB
T ss_pred HHhcCcHHHHHHHHHHHhcC-CCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHHHHHHHHhh
Confidence 56799999999988888873 333388999999 255555555432210 001123344443343332
Q ss_pred ----c-ccEEEEEecCCCh--hhhcccCCCCCCCCCCcEEEEEeCchh-hhhc-CCCCceEecCCCCHHHHHHHHHHhhC
Q 037229 98 ----S-KEFVLCWMMCGSE--LILTQMGVPVPNPKRMSKVLFTTRFVE-VYGH-KEADEMFRMECLRHEEAWKLFQMKVG 168 (577)
Q Consensus 98 ----~-kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~~~-v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~ 168 (577)
. .+-++|+|++... ...+.+...+.......++|++|.... +... ..-...+.+.+++.++..+.+...+-
T Consensus 104 ~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~ 183 (340)
T 1sxj_C 104 RQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLV 183 (340)
T ss_dssp CCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHH
T ss_pred cccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccCCCHHHHHHHHHHHHH
Confidence 1 3678999998542 233333322222233566777765432 2111 11124788999999998888877663
Q ss_pred CCCCCCCCChhHHHHHHHHHcCCCchH
Q 037229 169 KETMDDHSDIPKLVEIVTKECGGLPLV 195 (577)
Q Consensus 169 ~~~~~~~~~~~~~~~~i~~~c~glPLa 195 (577)
...... -++....+++.++|-+-.
T Consensus 184 ~~~~~i---~~~~~~~i~~~s~G~~r~ 207 (340)
T 1sxj_C 184 HEKLKL---SPNAEKALIELSNGDMRR 207 (340)
T ss_dssp TTTCCB---CHHHHHHHHHHHTTCHHH
T ss_pred HcCCCC---CHHHHHHHHHHcCCCHHH
Confidence 222111 134567788888887653
No 210
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=83.10 E-value=17 Score=39.52 Aligned_cols=133 Identities=15% Similarity=0.086 Sum_probs=78.4
Q ss_pred CCccccHHHHHHHHHHhhcCCCceEEEEEeccch----hHHHHHHHhCC---C----c-c------------hhccCCHH
Q 037229 32 DLTVGLESTFDQVWSCLVEEEQVGIIGLYGMEGW----IQEQIRRKLGL---V----D-D------------LWARKGLE 87 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~~~~~vv~I~G~gGw----~~~~i~~~l~~---~----~-~------------~~~~~~~~ 87 (577)
++++||+.+++++.+.|... ...-+-++|..|- +.+.++..+.. . . . .......+
T Consensus 186 d~~iGr~~~i~~l~~~l~~~-~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e 264 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRR-RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFE 264 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSS-SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHH
T ss_pred CCccCCHHHHHHHHHHHhcc-CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHH
Confidence 67899999999999999874 3334568999992 45555544410 0 0 0 00112334
Q ss_pred HHHHHHHHhcc--ccEEEEEecCCCh----------hh-hcccCCCCCCCCCCcEEEEEeCchhhhhcCC-------CCc
Q 037229 88 EKAMNIFGILS--KEFVLCWMMCGSE----------LI-LTQMGVPVPNPKRMSKVLFTTRFVEVYGHKE-------ADE 147 (577)
Q Consensus 88 ~~~~~l~~~L~--kr~LlVLDdv~~~----------~~-~~~l~~~~~~~~~gsrIivTTR~~~v~~~~~-------~~~ 147 (577)
...+.+.+.+. +..+|++||+... .+ ...+...+. ..+-++|.+|.......... --.
T Consensus 265 ~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~--~~~~~~I~at~~~~~~~~~~~d~aL~~Rf~ 342 (758)
T 1r6b_X 265 KRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGSTTYQEFSNIFEKDRALARRFQ 342 (758)
T ss_dssp HHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS--SCCCEEEEEECHHHHHCCCCCTTSSGGGEE
T ss_pred HHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh--CCCeEEEEEeCchHHhhhhhcCHHHHhCce
Confidence 44445555554 6799999999743 11 223333332 22456677766554322211 113
Q ss_pred eEecCCCCHHHHHHHHHHhh
Q 037229 148 MFRMECLRHEEAWKLFQMKV 167 (577)
Q Consensus 148 ~~~l~~L~~~~~~~Lf~~~a 167 (577)
.+.+...+.++..+++...+
T Consensus 343 ~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 343 KIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp EEECCCCCHHHHHHHHHHHH
T ss_pred EEEcCCCCHHHHHHHHHHHH
Confidence 68899999999888887644
No 211
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.41 E-value=38 Score=33.48 Aligned_cols=158 Identities=10% Similarity=0.097 Sum_probs=93.6
Q ss_pred CCccccHHHHHHHHHHhhcC------------CCceEEEEEeccc----hhHHHHHHHhCCCcc-----hhcc---CCHH
Q 037229 32 DLTVGLESTFDQVWSCLVEE------------EQVGIIGLYGMEG----WIQEQIRRKLGLVDD-----LWAR---KGLE 87 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~------------~~~~vv~I~G~gG----w~~~~i~~~l~~~~~-----~~~~---~~~~ 87 (577)
+++.|.++.+++|.+.+.-. ...+=|-++|++| .+.+.++.+.+..-- .... ...+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese 227 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGS 227 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHH
Confidence 67889999999998765431 3345677999999 488888888875421 1111 1223
Q ss_pred HHHHHHHHhcc--ccEEEEEecCCChh----------------hhcccCCCCC--CCCCCcEEEEEeCchhhh-----hc
Q 037229 88 EKAMNIFGILS--KEFVLCWMMCGSEL----------------ILTQMGVPVP--NPKRMSKVLFTTRFVEVY-----GH 142 (577)
Q Consensus 88 ~~~~~l~~~L~--kr~LlVLDdv~~~~----------------~~~~l~~~~~--~~~~gsrIivTTR~~~v~-----~~ 142 (577)
...+.+.+.-+ ..+.|++|+++... ....+...+. ....+-.||.||-..+.. +.
T Consensus 228 ~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRp 307 (405)
T 4b4t_J 228 RMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRP 307 (405)
T ss_dssp HHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHST
T ss_pred HHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCC
Confidence 44445555544 78999999997420 0111111111 123344566677654442 21
Q ss_pred CCCCceEecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCc
Q 037229 143 KEADEMFRMECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLP 193 (577)
Q Consensus 143 ~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP 193 (577)
-.-+..+++..-+.++-.++|..+.-........++ ..+++.+.|+-
T Consensus 308 GRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl----~~lA~~t~G~S 354 (405)
T 4b4t_J 308 GRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINL----RKVAEKMNGCS 354 (405)
T ss_dssp TSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCH----HHHHHHCCSCC
T ss_pred CcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCH----HHHHHHCCCCC
Confidence 234668889888888888899877644332222233 34666677763
No 212
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=80.10 E-value=3.2 Score=38.61 Aligned_cols=137 Identities=10% Similarity=-0.043 Sum_probs=72.9
Q ss_pred CCccccHHHHHHHHHHhhc----------C-CCceEEEEEeccc----hhHHHHHHHhCCCcchhc---------cCCHH
Q 037229 32 DLTVGLESTFDQVWSCLVE----------E-EQVGIIGLYGMEG----WIQEQIRRKLGLVDDLWA---------RKGLE 87 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~----------~-~~~~vv~I~G~gG----w~~~~i~~~l~~~~~~~~---------~~~~~ 87 (577)
++++|.+..++.+.+.+.. + ...+-+.|+|..| .+.+.++..+....-... .....
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~ 90 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGAS 90 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCSSSCSS
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhhcchHHH
Confidence 6799999998888876541 0 1122366899999 477777777653211000 00001
Q ss_pred HHHHHHHHhcc-ccEEEEEecCCChh-----------------hhcccCCCCCCC---CCCcEEEEEeCchhhhh--cC-
Q 037229 88 EKAMNIFGILS-KEFVLCWMMCGSEL-----------------ILTQMGVPVPNP---KRMSKVLFTTRFVEVYG--HK- 143 (577)
Q Consensus 88 ~~~~~l~~~L~-kr~LlVLDdv~~~~-----------------~~~~l~~~~~~~---~~gsrIivTTR~~~v~~--~~- 143 (577)
.+...+..... +..+|++||+.... ....+...+... .....||.||....... ..
T Consensus 91 ~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~l~r 170 (268)
T 2r62_A 91 RVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMR 170 (268)
T ss_dssp SSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCGGGGS
T ss_pred HHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhcCHhHcC
Confidence 11111222223 56899999995321 122333333211 12245666666543211 11
Q ss_pred --CCCceEecCCCCHHHHHHHHHHhhC
Q 037229 144 --EADEMFRMECLRHEEAWKLFQMKVG 168 (577)
Q Consensus 144 --~~~~~~~l~~L~~~~~~~Lf~~~a~ 168 (577)
.-...+.+...+.++-.+++...+.
T Consensus 171 ~~Rf~~~i~i~~p~~~~r~~il~~~~~ 197 (268)
T 2r62_A 171 PGRFDRQVLVDKPDFNGRVEILKVHIK 197 (268)
T ss_dssp SSSSCCCCBCCCCCTTTHHHHHHHHTS
T ss_pred CCCCCeEEEecCcCHHHHHHHHHHHHh
Confidence 2234677888888888888876653
No 213
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.50 E-value=22 Score=35.69 Aligned_cols=158 Identities=12% Similarity=0.125 Sum_probs=92.4
Q ss_pred CCccccHHHHHHHHHHhhcC------------CCceEEEEEeccc----hhHHHHHHHhCCCcch-----h---ccCCHH
Q 037229 32 DLTVGLESTFDQVWSCLVEE------------EQVGIIGLYGMEG----WIQEQIRRKLGLVDDL-----W---ARKGLE 87 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~------------~~~~vv~I~G~gG----w~~~~i~~~l~~~~~~-----~---~~~~~~ 87 (577)
+++.|.++.+++|.+.+... ...+=|-++|++| .+.+.++..++..--. . ......
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Gese 260 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESA 260 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHHH
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchHHH
Confidence 67889999999988866431 3356788999999 4888889888754210 0 111223
Q ss_pred HHHHHHHHhcc--ccEEEEEecCCChh----------------hhcccCCCCC--CCCCCcEEEEEeCchhhhhc--CCC
Q 037229 88 EKAMNIFGILS--KEFVLCWMMCGSEL----------------ILTQMGVPVP--NPKRMSKVLFTTRFVEVYGH--KEA 145 (577)
Q Consensus 88 ~~~~~l~~~L~--kr~LlVLDdv~~~~----------------~~~~l~~~~~--~~~~gsrIivTTR~~~v~~~--~~~ 145 (577)
...+.+...-+ ..++|++|+++... ....+...+. ....+..||.||-..+.... ..+
T Consensus 261 ~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRp 340 (437)
T 4b4t_L 261 RIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRP 340 (437)
T ss_dssp HHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTST
T ss_pred HHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCC
Confidence 34455555554 78999999997420 0111111111 12234567777765554321 122
Q ss_pred ---CceEecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCc
Q 037229 146 ---DEMFRMECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLP 193 (577)
Q Consensus 146 ---~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP 193 (577)
+..+++..-+.+.-.++|..+.-........++ ..+++.+.|+-
T Consensus 341 GRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl----~~lA~~t~G~s 387 (437)
T 4b4t_L 341 GRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDF----EAAVKMSDGFN 387 (437)
T ss_dssp TSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCH----HHHHHTCCSCC
T ss_pred CccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCH----HHHHHhCCCCC
Confidence 446778777888888888877643321222233 34566676653
No 214
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=76.07 E-value=9.5 Score=38.88 Aligned_cols=132 Identities=11% Similarity=0.068 Sum_probs=71.1
Q ss_pred CCCccccHHHHHHHHHHhhcCCCceEEEEEeccch----hHHHHHHHhCCCc-------c---hhcc-----CCHHHHHH
Q 037229 31 SDLTVGLESTFDQVWSCLVEEEQVGIIGLYGMEGW----IQEQIRRKLGLVD-------D---LWAR-----KGLEEKAM 91 (577)
Q Consensus 31 ~~~~vGr~~~~~~i~~~L~~~~~~~vv~I~G~gGw----~~~~i~~~l~~~~-------~---~~~~-----~~~~~~~~ 91 (577)
.+++||++.+++.+...|... ...-+-++|..|- +.+.++..+.... . ..+. ...+....
T Consensus 179 ld~iiGr~~~i~~l~~~l~r~-~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~~~~g~~e~~~~ 257 (468)
T 3pxg_A 179 LDPVIGRSKEIQRVIEVLSRR-TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRLK 257 (468)
T ss_dssp SCCCCCCHHHHHHHHHHHHCS-SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------CTTHH
T ss_pred CCCccCcHHHHHHHHHHHhcc-CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCccccchHHHHHH
Confidence 367999999999999999774 2233468999992 6666666652100 0 0000 00011222
Q ss_pred HHHHhcc--ccEEEEEecCCChhhhcccCCCCCCCCCCcEEEEEeCchhhhhc-------CCCCceEecCCCCHHHHHHH
Q 037229 92 NIFGILS--KEFVLCWMMCGSELILTQMGVPVPNPKRMSKVLFTTRFVEVYGH-------KEADEMFRMECLRHEEAWKL 162 (577)
Q Consensus 92 ~l~~~L~--kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIivTTR~~~v~~~-------~~~~~~~~l~~L~~~~~~~L 162 (577)
.+.+.+. +..+|++| ...+....+...+.. ..-++|.||........ ..--..+.+...+.++..++
T Consensus 258 ~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~~--g~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~i 333 (468)
T 3pxg_A 258 KVMDEIRQAGNIILFID--AAIDASNILKPSLAR--GELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQI 333 (468)
T ss_dssp HHHHHHHTCCCCEEEEC--C--------CCCTTS--SSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHH
T ss_pred HHHHHHHhcCCeEEEEe--CchhHHHHHHHhhcC--CCEEEEecCCHHHHHHHhhcCHHHHHhCccceeCCCCHHHHHHH
Confidence 3333333 67899999 222333334433321 13456655554431110 01123689999999999999
Q ss_pred HHHhh
Q 037229 163 FQMKV 167 (577)
Q Consensus 163 f~~~a 167 (577)
+...+
T Consensus 334 L~~~~ 338 (468)
T 3pxg_A 334 LQGLR 338 (468)
T ss_dssp HHHTT
T ss_pred HHHHH
Confidence 98765
No 215
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.73 E-value=70 Score=32.20 Aligned_cols=158 Identities=11% Similarity=0.123 Sum_probs=92.5
Q ss_pred CCccccHHHHHHHHHHhhc-----------C-CCceEEEEEeccc----hhHHHHHHHhCCCcch-----h---ccCCHH
Q 037229 32 DLTVGLESTFDQVWSCLVE-----------E-EQVGIIGLYGMEG----WIQEQIRRKLGLVDDL-----W---ARKGLE 87 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~-----------~-~~~~vv~I~G~gG----w~~~~i~~~l~~~~~~-----~---~~~~~~ 87 (577)
+++.|.++.+++|.+.+.- + .-.+=|-++|+.| .+.+.++.+++..--. . .....+
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGese 288 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGA 288 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSHHH
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCHHH
Confidence 6789999999999886532 1 3456778999999 4888888888754210 0 111223
Q ss_pred HHHHHHHHhcc--ccEEEEEecCCChh----------------hhcccCCCCC--CCCCCcEEEEEeCchhhh-----hc
Q 037229 88 EKAMNIFGILS--KEFVLCWMMCGSEL----------------ILTQMGVPVP--NPKRMSKVLFTTRFVEVY-----GH 142 (577)
Q Consensus 88 ~~~~~l~~~L~--kr~LlVLDdv~~~~----------------~~~~l~~~~~--~~~~gsrIivTTR~~~v~-----~~ 142 (577)
...+.+...-+ ..++|++|+++... ....+...+. ....+-.||.||-..+.. +.
T Consensus 289 k~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRp 368 (467)
T 4b4t_H 289 RMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRP 368 (467)
T ss_dssp HHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHST
T ss_pred HHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhcc
Confidence 44555555554 78999999997420 0011111111 112234455566544331 11
Q ss_pred CCCCceEecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCc
Q 037229 143 KEADEMFRMECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLP 193 (577)
Q Consensus 143 ~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP 193 (577)
-.-+..+++..-+.++-.++|..++-.......-++ ..+++.+.|+-
T Consensus 369 GRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl----~~LA~~T~GfS 415 (467)
T 4b4t_H 369 GRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRW----ELISRLCPNST 415 (467)
T ss_dssp TTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHHCCSCC
T ss_pred ccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCH----HHHHHHCCCCC
Confidence 134567888888888888899877744332222233 34666777763
No 216
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.33 E-value=53 Score=32.78 Aligned_cols=157 Identities=12% Similarity=0.090 Sum_probs=90.9
Q ss_pred CCccccHHHHHHHHHHhhcC------------CCceEEEEEeccc----hhHHHHHHHhCCCcc-----hh---ccCCHH
Q 037229 32 DLTVGLESTFDQVWSCLVEE------------EQVGIIGLYGMEG----WIQEQIRRKLGLVDD-----LW---ARKGLE 87 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~------------~~~~vv~I~G~gG----w~~~~i~~~l~~~~~-----~~---~~~~~~ 87 (577)
+++.|.++.+++|.+.+... ...+=|-++|+.| .+.+.++.+++..-- .. .....+
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGese 261 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGP 261 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHH
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHH
Confidence 67789999999988865421 3356688999999 488888888865421 01 112233
Q ss_pred HHHHHHHHhcc--ccEEEEEecCCChh----------------hhcccCCCCC--CCCCCcEEEEEeCchhhhhc--CCC
Q 037229 88 EKAMNIFGILS--KEFVLCWMMCGSEL----------------ILTQMGVPVP--NPKRMSKVLFTTRFVEVYGH--KEA 145 (577)
Q Consensus 88 ~~~~~l~~~L~--kr~LlVLDdv~~~~----------------~~~~l~~~~~--~~~~gsrIivTTR~~~v~~~--~~~ 145 (577)
...+.+.+.-+ ..++|++|+++... ....+...+. ....+..||.||-..+.... ..+
T Consensus 262 k~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRp 341 (437)
T 4b4t_I 262 RLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRP 341 (437)
T ss_dssp HHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCT
T ss_pred HHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcC
Confidence 44555555555 68999999986420 0111111111 12234456667765554321 222
Q ss_pred ---CceEecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCC
Q 037229 146 ---DEMFRMECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGL 192 (577)
Q Consensus 146 ---~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~gl 192 (577)
+..+++..-+.++-.++|..+.-........++. .+++.+.|+
T Consensus 342 GRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~----~LA~~T~Gf 387 (437)
T 4b4t_I 342 GRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLE----TLVTTKDDL 387 (437)
T ss_dssp TTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHH----HHHHHCCSC
T ss_pred CceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHH----HHHHhCCCC
Confidence 3467787778888888888776443322222333 455666665
No 217
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=74.29 E-value=9.4 Score=42.36 Aligned_cols=133 Identities=14% Similarity=0.102 Sum_probs=69.6
Q ss_pred CCCccccHHHHHHHHHHhhcCCCceEEEEEeccch----hHHHHHHHh----------CCCcchh----------ccCCH
Q 037229 31 SDLTVGLESTFDQVWSCLVEEEQVGIIGLYGMEGW----IQEQIRRKL----------GLVDDLW----------ARKGL 86 (577)
Q Consensus 31 ~~~~vGr~~~~~~i~~~L~~~~~~~vv~I~G~gGw----~~~~i~~~l----------~~~~~~~----------~~~~~ 86 (577)
.+++|||+++++++++.|... ...-+.++|..|- +.+.++..+ +..--.. .....
T Consensus 169 ld~viGr~~~i~~l~~~l~~~-~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~ 247 (854)
T 1qvr_A 169 LDPVIGRDEEIRRVIQILLRR-TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEF 247 (854)
T ss_dssp SCCCCSCHHHHHHHHHHHHCS-SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CH
T ss_pred CcccCCcHHHHHHHHHHHhcC-CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHH
Confidence 367899999999999999774 3333568899882 555555554 1100000 01112
Q ss_pred HHHHHHHHHhcc---ccEEEEEecCCChh-------hhcc---cCCCCCCCCCCcEEEEEeCchhh-----hhc-CCCCc
Q 037229 87 EEKAMNIFGILS---KEFVLCWMMCGSEL-------ILTQ---MGVPVPNPKRMSKVLFTTRFVEV-----YGH-KEADE 147 (577)
Q Consensus 87 ~~~~~~l~~~L~---kr~LlVLDdv~~~~-------~~~~---l~~~~~~~~~gsrIivTTR~~~v-----~~~-~~~~~ 147 (577)
......+.+.+. ++.+|++|++.... .++. +...+. ..+-++|.||..... ... ..-..
T Consensus 248 ~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~--~~~i~~I~at~~~~~~~~~~d~aL~rRf~ 325 (854)
T 1qvr_A 248 EERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA--RGELRLIGATTLDEYREIEKDPALERRFQ 325 (854)
T ss_dssp HHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHH--TTCCCEEEEECHHHHHHHTTCTTTCSCCC
T ss_pred HHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh--CCCeEEEEecCchHHhhhccCHHHHhCCc
Confidence 222333333333 56899999996532 0211 111111 123345555554332 111 11123
Q ss_pred eEecCCCCHHHHHHHHHHh
Q 037229 148 MFRMECLRHEEAWKLFQMK 166 (577)
Q Consensus 148 ~~~l~~L~~~~~~~Lf~~~ 166 (577)
.+.+.+++.++..+++...
T Consensus 326 ~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 326 PVYVDEPTVEETISILRGL 344 (854)
T ss_dssp CEEECCCCHHHHHHHHHHH
T ss_pred eEEeCCCCHHHHHHHHHhh
Confidence 5889999999999888643
No 218
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.11 E-value=20 Score=35.93 Aligned_cols=157 Identities=12% Similarity=0.079 Sum_probs=90.5
Q ss_pred CCccccHHHHHHHHHHhhcC------------CCceEEEEEeccc----hhHHHHHHHhCCCcc-----hh---ccCCHH
Q 037229 32 DLTVGLESTFDQVWSCLVEE------------EQVGIIGLYGMEG----WIQEQIRRKLGLVDD-----LW---ARKGLE 87 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~------------~~~~vv~I~G~gG----w~~~~i~~~l~~~~~-----~~---~~~~~~ 87 (577)
+++.|.++.+++|.+.+... ...+=|-++|++| .+.+.++.+++..-- .. .....+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGese 260 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGA 260 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccchHH
Confidence 67899999999998765321 3456788999999 488888888875421 01 111233
Q ss_pred HHHHHHHHhcc--ccEEEEEecCCCh-------h-----h----hcccCCCCCC--CCCCcEEEEEeCchhhhhc--CC-
Q 037229 88 EKAMNIFGILS--KEFVLCWMMCGSE-------L-----I----LTQMGVPVPN--PKRMSKVLFTTRFVEVYGH--KE- 144 (577)
Q Consensus 88 ~~~~~l~~~L~--kr~LlVLDdv~~~-------~-----~----~~~l~~~~~~--~~~gsrIivTTR~~~v~~~--~~- 144 (577)
...+.+...-+ ..++|++|+++.. . . ...+...+.. ...+--||-||...+.... ..
T Consensus 261 ~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRp 340 (434)
T 4b4t_M 261 KLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRS 340 (434)
T ss_dssp HHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCST
T ss_pred HHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcC
Confidence 44555555555 7899999998531 0 0 1111111111 1223445557765544321 12
Q ss_pred --CCceEecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCC
Q 037229 145 --ADEMFRMECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGL 192 (577)
Q Consensus 145 --~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~gl 192 (577)
-+..+++..-+.++-.++|..+.-.......-++ ..+++.+.|+
T Consensus 341 GRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl----~~lA~~t~G~ 386 (434)
T 4b4t_M 341 GRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINW----QELARSTDEF 386 (434)
T ss_dssp TSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCH----HHHHHHCSSC
T ss_pred CceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCH----HHHHHhCCCC
Confidence 2456788888888888888766533221122233 3456667765
No 219
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=71.03 E-value=28 Score=35.56 Aligned_cols=157 Identities=15% Similarity=0.080 Sum_probs=86.1
Q ss_pred CCccccHHHHHHHHHHhhcC------------CCceEEEEEeccc----hhHHHHHHHhCCCcch-----hcc---CCHH
Q 037229 32 DLTVGLESTFDQVWSCLVEE------------EQVGIIGLYGMEG----WIQEQIRRKLGLVDDL-----WAR---KGLE 87 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~------------~~~~vv~I~G~gG----w~~~~i~~~l~~~~~~-----~~~---~~~~ 87 (577)
++++|.+..+++|.+++... ....-|-|+|..| .+.+.|....+..--. ... ....
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~~~ 283 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESE 283 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcchhH
Confidence 56899999999998887531 3345578999999 3677777666432110 000 0111
Q ss_pred -HHHHHHHHhcc-ccEEEEEecCCCh-------------hhhcccCCCCC--CCCCCcEEEEEeCchhh-----hhcCCC
Q 037229 88 -EKAMNIFGILS-KEFVLCWMMCGSE-------------LILTQMGVPVP--NPKRMSKVLFTTRFVEV-----YGHKEA 145 (577)
Q Consensus 88 -~~~~~l~~~L~-kr~LlVLDdv~~~-------------~~~~~l~~~~~--~~~~gsrIivTTR~~~v-----~~~~~~ 145 (577)
.....+...-. +..+|+||++... .....+...+. ....+.+||.||..... .....-
T Consensus 284 ~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf 363 (489)
T 3hu3_A 284 SNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRF 363 (489)
T ss_dssp HHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSS
T ss_pred HHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcC
Confidence 12222222223 6679999999321 00111111111 11224566666665432 111123
Q ss_pred CceEecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCC
Q 037229 146 DEMFRMECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGL 192 (577)
Q Consensus 146 ~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~gl 192 (577)
...+.+...+.++-.+++..++..........+ ..+++.+.|+
T Consensus 364 ~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l----~~la~~t~g~ 406 (489)
T 3hu3_A 364 DREVDIGIPDATGRLEILQIHTKNMKLADDVDL----EQVANETHGH 406 (489)
T ss_dssp CEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCH----HHHHHTCTTC
T ss_pred ceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhH----HHHHHHccCC
Confidence 457889999999999999988754332222233 4456667775
No 220
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=70.56 E-value=3.6 Score=35.58 Aligned_cols=99 Identities=9% Similarity=-0.050 Sum_probs=48.7
Q ss_pred cHHHHHHHHHHhhcC--CCceEEEEEeccc----hhHHHHHHHhC-CCcchhccCCHHHHHHHHHH------------hc
Q 037229 37 LESTFDQVWSCLVEE--EQVGIIGLYGMEG----WIQEQIRRKLG-LVDDLWARKGLEEKAMNIFG------------IL 97 (577)
Q Consensus 37 r~~~~~~i~~~L~~~--~~~~vv~I~G~gG----w~~~~i~~~l~-~~~~~~~~~~~~~~~~~l~~------------~L 97 (577)
.+..++.+.+++..- ..-..+.|+|..| .+.+.++..+. ......-..+..+....+.. .+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKTV 98 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHHHHHHHh
Confidence 445555555555432 3346899999999 35555555542 00000011223333333222 22
Q ss_pred cccEEEEEecCCC--hhhhc--ccCCCCCC-CCCCcEEEEEeC
Q 037229 98 SKEFVLCWMMCGS--ELILT--QMGVPVPN-PKRMSKVLFTTR 135 (577)
Q Consensus 98 ~kr~LlVLDdv~~--~~~~~--~l~~~~~~-~~~gsrIivTTR 135 (577)
.+.-+|||||++. .+.|. .+...+.. ...|..||+||.
T Consensus 99 ~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn 141 (180)
T 3ec2_A 99 LNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTN 141 (180)
T ss_dssp HTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred cCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 2456899999983 23332 12111111 124677888886
No 221
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=67.81 E-value=1e+02 Score=30.71 Aligned_cols=157 Identities=13% Similarity=0.133 Sum_probs=84.5
Q ss_pred CCccccHHHHHHHHHHhhcC------------CCceEEEEEeccc----hhHHHHHHHhCCCcch-----hc---cCCHH
Q 037229 32 DLTVGLESTFDQVWSCLVEE------------EQVGIIGLYGMEG----WIQEQIRRKLGLVDDL-----WA---RKGLE 87 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~------------~~~~vv~I~G~gG----w~~~~i~~~l~~~~~~-----~~---~~~~~ 87 (577)
+++.|.++.+++|.+.+... ...+=|-++|++| .+.+.++..++..--. .. ....+
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e 251 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGP 251 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhH
Confidence 67899999999998866431 3345688999999 4888888888654210 01 11223
Q ss_pred HHHHHHHHhcc--ccEEEEEecCCChh----------------hhcccCCCCC--CCCCCcEEEEEeCchhh-----hhc
Q 037229 88 EKAMNIFGILS--KEFVLCWMMCGSEL----------------ILTQMGVPVP--NPKRMSKVLFTTRFVEV-----YGH 142 (577)
Q Consensus 88 ~~~~~l~~~L~--kr~LlVLDdv~~~~----------------~~~~l~~~~~--~~~~gsrIivTTR~~~v-----~~~ 142 (577)
...+.+.+.-+ ..+++++|+++... ....+...+. ....|-.||.||-..+. .+.
T Consensus 252 ~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~AllRp 331 (428)
T 4b4t_K 252 RMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRP 331 (428)
T ss_dssp HHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHHHHSS
T ss_pred HHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcChhhhcC
Confidence 34444444444 67999999995310 0111111111 12234456667764443 111
Q ss_pred CCCCceEecCCCCH-HHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCC
Q 037229 143 KEADEMFRMECLRH-EEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGL 192 (577)
Q Consensus 143 ~~~~~~~~l~~L~~-~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~gl 192 (577)
-.-+..+++..+.+ ++-.++|..+.-........++ ..+++.+.|+
T Consensus 332 GRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl----~~lA~~t~G~ 378 (428)
T 4b4t_K 332 GRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADL----DSLIIRNDSL 378 (428)
T ss_dssp SSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCH----HHHHHHTTTC
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCH----HHHHHHCCCC
Confidence 12234566765654 4445566655533221222233 3456667665
No 222
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=64.33 E-value=8.3 Score=36.78 Aligned_cols=129 Identities=12% Similarity=0.118 Sum_probs=75.1
Q ss_pred ccHHHHHHHHHHhhcCCCceEEEEEeccch----hHHHHHHHhC-C--Ccc---hhc----cCCHHHHHHHHHHhcc---
Q 037229 36 GLESTFDQVWSCLVEEEQVGIIGLYGMEGW----IQEQIRRKLG-L--VDD---LWA----RKGLEEKAMNIFGILS--- 98 (577)
Q Consensus 36 Gr~~~~~~i~~~L~~~~~~~vv~I~G~gGw----~~~~i~~~l~-~--~~~---~~~----~~~~~~~~~~l~~~L~--- 98 (577)
|-++.++.+.+.+..+. ....-++|..|. +.+.++...+ . ... ..+ ....+++.+ +.+...
T Consensus 1 g~~~~~~~L~~~i~~~~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~-li~~~~~~p 78 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRT-IKDFLNYSP 78 (305)
T ss_dssp ---CHHHHHHHHHHTCS-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHH-HHHHHTSCC
T ss_pred ChHHHHHHHHHHHHCCC-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHH-HHHHHhhcc
Confidence 44566677777777634 778889999994 4444444321 0 000 001 233343333 444443
Q ss_pred ---ccEEEEEecCCCh--hhhcccCCCCCCCCCCcEEEEEeCch-hhhhcCCCCceEecCCCCHHHHHHHHHHhh
Q 037229 99 ---KEFVLCWMMCGSE--LILTQMGVPVPNPKRMSKVLFTTRFV-EVYGHKEADEMFRMECLRHEEAWKLFQMKV 167 (577)
Q Consensus 99 ---kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~~-~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a 167 (577)
++-++|+|++..- ...+.+...+-.....+.+|++|.+. .+......- .+++.+++.++..+.+.+.+
T Consensus 79 ~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 79 ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCHHHHHHHHHHH
T ss_pred ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHHHHHHHHHHHh
Confidence 3568999999753 34555544443334467777776543 444433344 89999999999999888765
No 223
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=62.90 E-value=88 Score=33.89 Aligned_cols=132 Identities=13% Similarity=0.078 Sum_probs=71.7
Q ss_pred CCCccccHHHHHHHHHHhhcCCCceEEEEEeccch----hHHHHHHHhCC----------Ccchhc-----cCCHHHHHH
Q 037229 31 SDLTVGLESTFDQVWSCLVEEEQVGIIGLYGMEGW----IQEQIRRKLGL----------VDDLWA-----RKGLEEKAM 91 (577)
Q Consensus 31 ~~~~vGr~~~~~~i~~~L~~~~~~~vv~I~G~gGw----~~~~i~~~l~~----------~~~~~~-----~~~~~~~~~ 91 (577)
.+++||++..++++...|.... ..-+-++|..|- +.+.++..+.. .--..+ ....+....
T Consensus 179 ld~iiG~~~~i~~l~~~l~~~~-~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g~~~~G~~e~~l~ 257 (758)
T 3pxi_A 179 LDPVIGRSKEIQRVIEVLSRRT-KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRLK 257 (758)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSS-SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----------CTTHH
T ss_pred CCCccCchHHHHHHHHHHhCCC-CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecccccccchHHHHHH
Confidence 3679999999999999998742 223569999992 66666666511 000000 000111222
Q ss_pred HHHHhcc--ccEEEEEecCCChhhhcccCCCCCCCCCCcEEEEEeCchhhhhc--CC-----CCceEecCCCCHHHHHHH
Q 037229 92 NIFGILS--KEFVLCWMMCGSELILTQMGVPVPNPKRMSKVLFTTRFVEVYGH--KE-----ADEMFRMECLRHEEAWKL 162 (577)
Q Consensus 92 ~l~~~L~--kr~LlVLDdv~~~~~~~~l~~~~~~~~~gsrIivTTR~~~v~~~--~~-----~~~~~~l~~L~~~~~~~L 162 (577)
.+.+.+. ++.+|++| ...+....+...+. ...-++|.||........ .. --..+.+...+.++..++
T Consensus 258 ~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al~rRf~~i~v~~p~~~~~~~i 333 (758)
T 3pxi_A 258 KVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQI 333 (758)
T ss_dssp HHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHH
T ss_pred HHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHH
Confidence 3333333 67899999 22222233333332 223566666654442110 01 124689999999999999
Q ss_pred HHHhh
Q 037229 163 FQMKV 167 (577)
Q Consensus 163 f~~~a 167 (577)
+....
T Consensus 334 l~~~~ 338 (758)
T 3pxi_A 334 LQGLR 338 (758)
T ss_dssp HHHTT
T ss_pred HHHHH
Confidence 98655
No 224
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=62.00 E-value=88 Score=31.71 Aligned_cols=158 Identities=13% Similarity=0.104 Sum_probs=86.0
Q ss_pred CCccccHHHHHHHHHHhhc---C--------CCceEEEEEeccc----hhHHHHHHHhCCCcchh-----ccC--C-HHH
Q 037229 32 DLTVGLESTFDQVWSCLVE---E--------EQVGIIGLYGMEG----WIQEQIRRKLGLVDDLW-----ARK--G-LEE 88 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~---~--------~~~~vv~I~G~gG----w~~~~i~~~l~~~~~~~-----~~~--~-~~~ 88 (577)
++++|.++.++++.+.+.. . .-.+-|.|+|..| -+.+.++.+.+..--.. ... . ...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~g~~~~ 95 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAA 95 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCTTHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHhcccHH
Confidence 6799999988888776432 1 1123477999999 37777777775432100 000 0 111
Q ss_pred HHHHHHH-hcc-ccEEEEEecCCCh----------------hhhcccCCCCC--CCCCCcEEEEEeCchhhhh--cCC--
Q 037229 89 KAMNIFG-ILS-KEFVLCWMMCGSE----------------LILTQMGVPVP--NPKRMSKVLFTTRFVEVYG--HKE-- 144 (577)
Q Consensus 89 ~~~~l~~-~L~-kr~LlVLDdv~~~----------------~~~~~l~~~~~--~~~~gsrIivTTR~~~v~~--~~~-- 144 (577)
..+.+.+ ... ...+|++|++... .....+...+. ....+..||.||...+... ...
T Consensus 96 ~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~g 175 (476)
T 2ce7_A 96 RVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPG 175 (476)
T ss_dssp HHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTT
T ss_pred HHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccC
Confidence 2222222 223 6789999999531 01122211111 1123566777777665432 122
Q ss_pred -CCceEecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCc
Q 037229 145 -ADEMFRMECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLP 193 (577)
Q Consensus 145 -~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP 193 (577)
-+..+.+...+.++-.+++..++-......... ...+++.+.|..
T Consensus 176 RFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 176 RFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp SSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred cceeEeecCCCCHHHHHHHHHHHHHhCCCcchhh----HHHHHHhcCCCc
Confidence 234778888888877788877664332111122 233677788876
No 225
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=61.77 E-value=1.7 Score=36.20 Aligned_cols=101 Identities=10% Similarity=-0.089 Sum_probs=52.6
Q ss_pred CccccHHHHHHHHHHhhcC-CCceEEEEEeccc----hhHHHHHHHhCCCcc----hhccCCHHHHHHHHHHhcc--ccE
Q 037229 33 LTVGLESTFDQVWSCLVEE-EQVGIIGLYGMEG----WIQEQIRRKLGLVDD----LWARKGLEEKAMNIFGILS--KEF 101 (577)
Q Consensus 33 ~~vGr~~~~~~i~~~L~~~-~~~~vv~I~G~gG----w~~~~i~~~l~~~~~----~~~~~~~~~~~~~l~~~L~--kr~ 101 (577)
+++|++..++++.+.+..- ..-.-|-|+|..| .+.+.|......... ........ ......+. ..-
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v~~~~~~~~~---~~~~~~~~~a~~g 78 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPDNA---PQLNDFIALAQGG 78 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCEEEECCTTTS---SCHHHHHHHHTTS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEEEECCCCCcc---hhhhcHHHHcCCc
Confidence 5799999999999887653 2223356999999 355665554321110 00000000 11222333 566
Q ss_pred EEEEecCCCh--hhhcccCCCCCCCCCCcEEEEEeCc
Q 037229 102 VLCWMMCGSE--LILTQMGVPVPNPKRMSKVLFTTRF 136 (577)
Q Consensus 102 LlVLDdv~~~--~~~~~l~~~~~~~~~gsrIivTTR~ 136 (577)
.|++|++... .....+...+.......+||.||..
T Consensus 79 ~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 79 TLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp CEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred EEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 8999999764 2223332222222334577777763
No 226
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=56.40 E-value=1.9 Score=35.95 Aligned_cols=101 Identities=12% Similarity=-0.043 Sum_probs=48.0
Q ss_pred CCccccHHHHHHHHHHhhcC-CCceEEEEEeccc----hhHHHHHHHhCCCcchhccCCHHHHHHHHHHhcc--ccEEEE
Q 037229 32 DLTVGLESTFDQVWSCLVEE-EQVGIIGLYGMEG----WIQEQIRRKLGLVDDLWARKGLEEKAMNIFGILS--KEFVLC 104 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~-~~~~vv~I~G~gG----w~~~~i~~~l~~~~~~~~~~~~~~~~~~l~~~L~--kr~LlV 104 (577)
.+++|++..++++.+.+..- ....-|-|+|..| .+.+.|..... .--..+..+... ......+. +.-.|+
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~--~~~~~~~~~a~~~~l~ 80 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLI--DMPMELLQKAEGGVLY 80 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHH--HCHHHHHHHTTTSEEE
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCCh--HhhhhHHHhCCCCeEE
Confidence 46799999999998887653 2223356899998 23333322221 100001111111 11233333 556889
Q ss_pred EecCCCh--hhhcccCCCCCCC-CCCcEEEEEeC
Q 037229 105 WMMCGSE--LILTQMGVPVPNP-KRMSKVLFTTR 135 (577)
Q Consensus 105 LDdv~~~--~~~~~l~~~~~~~-~~gsrIivTTR 135 (577)
+|++... +....+...+... ..+.+||.||.
T Consensus 81 lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn 114 (143)
T 3co5_A 81 VGDIAQYSRNIQTGITFIIGKAERCRVRVIASCS 114 (143)
T ss_dssp EEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEE
T ss_pred EeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecC
Confidence 9999764 2222222222111 23567877775
No 227
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=54.61 E-value=21 Score=32.85 Aligned_cols=44 Identities=16% Similarity=0.141 Sum_probs=27.6
Q ss_pred CCccccHHHHHHHHHHhhcC-CCceEEEEEeccc----hhHHHHHHHhC
Q 037229 32 DLTVGLESTFDQVWSCLVEE-EQVGIIGLYGMEG----WIQEQIRRKLG 75 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~-~~~~vv~I~G~gG----w~~~~i~~~l~ 75 (577)
+.++|.+..+.++.+.+..- ....-|-|+|..| .+.+.|.....
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 56899999999988777643 2224566899999 36666665553
No 228
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=53.60 E-value=14 Score=32.38 Aligned_cols=105 Identities=14% Similarity=-0.016 Sum_probs=50.4
Q ss_pred CCccccH----HHHHHHHHHhhcC-C--CceEEEEEeccc----hhHHHHHHHhCCCcchhccCCHHHHHHH--------
Q 037229 32 DLTVGLE----STFDQVWSCLVEE-E--QVGIIGLYGMEG----WIQEQIRRKLGLVDDLWARKGLEEKAMN-------- 92 (577)
Q Consensus 32 ~~~vGr~----~~~~~i~~~L~~~-~--~~~vv~I~G~gG----w~~~~i~~~l~~~~~~~~~~~~~~~~~~-------- 92 (577)
+++++.+ ..++.+.+++... . ....+.|+|..| .+.+.++..+.......-..+...+...
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (202)
T 2w58_A 25 SDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQ 104 (202)
T ss_dssp TSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---C
T ss_pred hhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccc
Confidence 4566543 3455556666543 1 126788999999 3555555555321110011111222221
Q ss_pred ----HHHhccccEEEEEecCCCh--hhhcc--cCC-CCCCC-CCCcEEEEEeCc
Q 037229 93 ----IFGILSKEFVLCWMMCGSE--LILTQ--MGV-PVPNP-KRMSKVLFTTRF 136 (577)
Q Consensus 93 ----l~~~L~kr~LlVLDdv~~~--~~~~~--l~~-~~~~~-~~gsrIivTTR~ 136 (577)
+.+.+.+.-+|||||++.. ..|.. +.. .+... ..+.++|+||..
T Consensus 105 ~~~~~~~~~~~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 105 TMNEKLDYIKKVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp CCHHHHHHHHHSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred hHHHHHHHhcCCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 2223332349999999653 33332 211 11111 235678888873
No 229
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=53.36 E-value=36 Score=31.96 Aligned_cols=43 Identities=16% Similarity=0.275 Sum_probs=32.3
Q ss_pred CCccccHHHHHHHHHHhhcC--------CCceEEEEEeccc----hhHHHHHHHh
Q 037229 32 DLTVGLESTFDQVWSCLVEE--------EQVGIIGLYGMEG----WIQEQIRRKL 74 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~--------~~~~vv~I~G~gG----w~~~~i~~~l 74 (577)
..++|.+..++.+...+... .....+.++|..| .+.+.++..+
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHH
Confidence 46899999999998888763 1135899999999 3666666655
No 230
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=53.14 E-value=8.6 Score=42.01 Aligned_cols=134 Identities=8% Similarity=0.081 Sum_probs=72.0
Q ss_pred CCccccHHHHHHHHHHhhcC--------CCceEEEEEeccc----hhHHHHHHHhCCCcc--------hh-ccCCHHHHH
Q 037229 32 DLTVGLESTFDQVWSCLVEE--------EQVGIIGLYGMEG----WIQEQIRRKLGLVDD--------LW-ARKGLEEKA 90 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~--------~~~~vv~I~G~gG----w~~~~i~~~l~~~~~--------~~-~~~~~~~~~ 90 (577)
..++|.+..++.+.+.+... .....+-++|..| .+.+.++..+..... .. +..... .
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~--~ 568 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTS--G 568 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC---
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccc--c
Confidence 46899999999998887653 1123688999999 366677666522211 00 000000 2
Q ss_pred HHHHHhcc--ccEEEEEecCCCh--hhhcccC-----CCCCC------CCCCcEEEEEeCc-----hh----hhhcC---
Q 037229 91 MNIFGILS--KEFVLCWMMCGSE--LILTQMG-----VPVPN------PKRMSKVLFTTRF-----VE----VYGHK--- 143 (577)
Q Consensus 91 ~~l~~~L~--kr~LlVLDdv~~~--~~~~~l~-----~~~~~------~~~gsrIivTTR~-----~~----v~~~~--- 143 (577)
..+.+.++ ..-.|+||++... +....+. ..+.+ .....+||.||.. .. +...+
T Consensus 569 ~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~ 648 (758)
T 3pxi_A 569 GQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPE 648 (758)
T ss_dssp --CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHH
T ss_pred chhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHH
Confidence 23334444 3348999999653 1122221 11111 1234688888872 11 11111
Q ss_pred ---CCCceEecCCCCHHHHHHHHHHhh
Q 037229 144 ---EADEMFRMECLRHEEAWKLFQMKV 167 (577)
Q Consensus 144 ---~~~~~~~l~~L~~~~~~~Lf~~~a 167 (577)
..+.++.+.+++.++-.+++...+
T Consensus 649 l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 649 FINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp HHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred HHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 123578889999988888777644
No 231
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=51.54 E-value=37 Score=31.76 Aligned_cols=133 Identities=10% Similarity=-0.023 Sum_probs=73.0
Q ss_pred CCccccHHHHHHHHHHhhc-------------CCCceEEEEEeccc----hhHHHHHHHhCCCcchh---c-------cC
Q 037229 32 DLTVGLESTFDQVWSCLVE-------------EEQVGIIGLYGMEG----WIQEQIRRKLGLVDDLW---A-------RK 84 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~-------------~~~~~vv~I~G~gG----w~~~~i~~~l~~~~~~~---~-------~~ 84 (577)
+.++|.+..++.+...+.. .....-+-++|..| .+.+.++..++...-.. . ..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 4689999999999988765 12234567999999 37777777765421100 0 01
Q ss_pred CHHHHHHHHHHh----cc---ccEEEEEecCCChh--h------------hcccCCCCCC----------CCCCcEEEEE
Q 037229 85 GLEEKAMNIFGI----LS---KEFVLCWMMCGSEL--I------------LTQMGVPVPN----------PKRMSKVLFT 133 (577)
Q Consensus 85 ~~~~~~~~l~~~----L~---kr~LlVLDdv~~~~--~------------~~~l~~~~~~----------~~~gsrIivT 133 (577)
+.......+... +. ...+|++|++.... . ...+...+.. ...+..+|.|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~ 174 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIAS 174 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEc
Confidence 112223333331 22 36799999996531 1 1112111111 1123455555
Q ss_pred eC----ch-----hhhhcCCCCceEecCCCCHHHHHHHHHHh
Q 037229 134 TR----FV-----EVYGHKEADEMFRMECLRHEEAWKLFQMK 166 (577)
Q Consensus 134 TR----~~-----~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 166 (577)
|. .. .+... ....+.+.+++.++..+++.+.
T Consensus 175 ~~~~~~~~~~l~~~l~~R--~~~~i~~~~~~~~~~~~il~~~ 214 (310)
T 1ofh_A 175 GAFQVARPSDLIPELQGR--LPIRVELTALSAADFERILTEP 214 (310)
T ss_dssp ECCSSSCGGGSCHHHHHT--CCEEEECCCCCHHHHHHHHHSS
T ss_pred CCcccCCcccCCHHHHhh--CCceEEcCCcCHHHHHHHHHhh
Confidence 42 11 11222 2356899999999988888753
No 232
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=49.19 E-value=43 Score=31.61 Aligned_cols=43 Identities=7% Similarity=0.120 Sum_probs=30.2
Q ss_pred CCccccHHHHHHHHHHhhcC-CCceEEEEEeccc----hhHHHHHHHh
Q 037229 32 DLTVGLESTFDQVWSCLVEE-EQVGIIGLYGMEG----WIQEQIRRKL 74 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~-~~~~vv~I~G~gG----w~~~~i~~~l 74 (577)
++++|.+..+.++.+.+..- ....-|-|+|..| .+.+.|....
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 46899999999999887664 2233456999999 2556666544
No 233
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=45.26 E-value=2.7e+02 Score=30.33 Aligned_cols=158 Identities=15% Similarity=0.088 Sum_probs=87.5
Q ss_pred CCccccHHHHHHHHHHhhc----C--------CCceEEEEEeccc----hhHHHHHHHhCCCcch-----hcc---CCHH
Q 037229 32 DLTVGLESTFDQVWSCLVE----E--------EQVGIIGLYGMEG----WIQEQIRRKLGLVDDL-----WAR---KGLE 87 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~----~--------~~~~vv~I~G~gG----w~~~~i~~~l~~~~~~-----~~~---~~~~ 87 (577)
+++.|.++.+++|.+.+.- . ...+=|-++|..| -+.+.++.+++..--. ... ...+
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~gese 283 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESE 283 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTTHHH
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccchHHH
Confidence 6788999999888876532 1 2356688999999 3777777777643210 011 1122
Q ss_pred HHHHHHHHhcc--ccEEEEEecCCChh--------h-----hcccCCCCC--CCCCCcEEEEEeCchhhhh-cC----CC
Q 037229 88 EKAMNIFGILS--KEFVLCWMMCGSEL--------I-----LTQMGVPVP--NPKRMSKVLFTTRFVEVYG-HK----EA 145 (577)
Q Consensus 88 ~~~~~l~~~L~--kr~LlVLDdv~~~~--------~-----~~~l~~~~~--~~~~gsrIivTTR~~~v~~-~~----~~ 145 (577)
...+.+.+.-+ ...+|++|+++... + ...+...+. ....+--||.||...+... .+ .-
T Consensus 284 ~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRF 363 (806)
T 3cf2_A 284 SNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRF 363 (806)
T ss_dssp HHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSS
T ss_pred HHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCccc
Confidence 23333333333 68999999996420 0 111111111 0112334555665444321 11 22
Q ss_pred CceEecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCc
Q 037229 146 DEMFRMECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLP 193 (577)
Q Consensus 146 ~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP 193 (577)
+..+++...+.++-.++|..+.-........++ ..+++++.|+-
T Consensus 364 d~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl----~~lA~~T~Gfs 407 (806)
T 3cf2_A 364 DREVDIGIPDATGRLEILQIHTKNMKLADDVDL----EQVANETHGHV 407 (806)
T ss_dssp CEEEECCCCCHHHHHHHHHHTCSSSEECTTCCH----HHHHHHCCSCC
T ss_pred ceEEecCCCCHHHHHHHHHHHhcCCCCCcccCH----HHHHHhcCCCC
Confidence 457888888888888888877644332222233 34667788774
No 234
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=35.51 E-value=2.4e+02 Score=25.14 Aligned_cols=158 Identities=9% Similarity=0.059 Sum_probs=78.8
Q ss_pred CCccccHHHHHHHHHHhhcC-----------CCceEEEEEeccc----hhHHHHHHHhCCCcchhc-----cCCH---HH
Q 037229 32 DLTVGLESTFDQVWSCLVEE-----------EQVGIIGLYGMEG----WIQEQIRRKLGLVDDLWA-----RKGL---EE 88 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~-----------~~~~vv~I~G~gG----w~~~~i~~~l~~~~~~~~-----~~~~---~~ 88 (577)
++++|.+..++++.+....- .-.+=+.|+|..| -+.+.|+..+....-... .... ..
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~ 95 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAA 95 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSCTTHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHHHhhHHHH
Confidence 67899988877776543311 0112288999999 367777766643211000 0001 11
Q ss_pred HHHHHHHhcc--ccEEEEEecCCCh------------hh----hcccCCCCCCC--CCCcEEEEEeCchhhhhc--C---
Q 037229 89 KAMNIFGILS--KEFVLCWMMCGSE------------LI----LTQMGVPVPNP--KRMSKVLFTTRFVEVYGH--K--- 143 (577)
Q Consensus 89 ~~~~l~~~L~--kr~LlVLDdv~~~------------~~----~~~l~~~~~~~--~~gsrIivTTR~~~v~~~--~--- 143 (577)
....+.+... ...++++|++... .. ...+...+..+ ....-++.||...++... .
T Consensus 96 ~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~ 175 (254)
T 1ixz_A 96 RVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPG 175 (254)
T ss_dssp HHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTT
T ss_pred HHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCC
Confidence 1222333322 4579999999421 00 11221112111 122345556666555321 1
Q ss_pred CCCceEecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCc
Q 037229 144 EADEMFRMECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLP 193 (577)
Q Consensus 144 ~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP 193 (577)
.-...+.+...+.++-.+++...+-.........+ ..+++.+.|.-
T Consensus 176 rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~----~~la~~~~G~~ 221 (254)
T 1ixz_A 176 RFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDL----ALLAKRTPGFV 221 (254)
T ss_dssp SSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCH----HHHHHTCTTCC
T ss_pred cCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCH----HHHHHHcCCCC
Confidence 23457788888888888888766532221111122 24566666653
No 235
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=35.03 E-value=1.6e+02 Score=27.92 Aligned_cols=163 Identities=14% Similarity=0.059 Sum_probs=89.0
Q ss_pred CCccccHHHHHHHHHHhhcC----CCceEEEEEeccch----hHHHHHHHhCCCcch---hccCCHHHHHHHHHHhcccc
Q 037229 32 DLTVGLESTFDQVWSCLVEE----EQVGIIGLYGMEGW----IQEQIRRKLGLVDDL---WARKGLEEKAMNIFGILSKE 100 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~----~~~~vv~I~G~gGw----~~~~i~~~l~~~~~~---~~~~~~~~~~~~l~~~L~kr 100 (577)
++++|.+..++.+...+... .....+.++|..|= +.+.|+..++..... .......++. .+...+.++
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~-~~~~~~~~~ 103 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMA-AILTSLERG 103 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHH-HHHHHCCTT
T ss_pred HHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHH-HHHHHccCC
Confidence 56789988888877666542 34467899999992 777777777432110 0111222322 222333444
Q ss_pred EEEEEecCCCh--hhhcccCCCCCCC--------C----------CCcEEE-EEeCchhhhhcC--CCCceEecCCCCHH
Q 037229 101 FVLCWMMCGSE--LILTQMGVPVPNP--------K----------RMSKVL-FTTRFVEVYGHK--EADEMFRMECLRHE 157 (577)
Q Consensus 101 ~LlVLDdv~~~--~~~~~l~~~~~~~--------~----------~gsrIi-vTTR~~~v~~~~--~~~~~~~l~~L~~~ 157 (577)
-++++|++... ...+.+...+... + ..-.++ .||+...+.... .....+.+++.+.+
T Consensus 104 ~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~ 183 (334)
T 1in4_A 104 DVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVK 183 (334)
T ss_dssp CEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHH
T ss_pred CEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHHhcCceeeCCCCCHH
Confidence 57788987542 1222221100000 0 011222 344433331111 22346889999999
Q ss_pred HHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCchHHHH
Q 037229 158 EAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLPLVLVT 198 (577)
Q Consensus 158 ~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 198 (577)
+-.+++.+.+.... ...-.+.+..|++.+.|.|-.+..
T Consensus 184 ~l~~iL~~~~~~~~---~~~~~~~~~~ia~~~~G~~R~a~~ 221 (334)
T 1in4_A 184 ELKEIIKRAASLMD---VEIEDAAAEMIAKRSRGTPRIAIR 221 (334)
T ss_dssp HHHHHHHHHHHHTT---CCBCHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHHHHcC---CCcCHHHHHHHHHhcCCChHHHHH
Confidence 99999988763222 122346788899999999865443
No 236
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=33.26 E-value=1.2e+02 Score=28.81 Aligned_cols=151 Identities=9% Similarity=-0.014 Sum_probs=82.2
Q ss_pred HHHHhhcCCCceEEEEEeccch----hHHHHHHHh---CCCc-ch---hccCCHHHHHHHHHHh-cc-ccEEEEEecCCC
Q 037229 44 VWSCLVEEEQVGIIGLYGMEGW----IQEQIRRKL---GLVD-DL---WARKGLEEKAMNIFGI-LS-KEFVLCWMMCGS 110 (577)
Q Consensus 44 i~~~L~~~~~~~vv~I~G~gGw----~~~~i~~~l---~~~~-~~---~~~~~~~~~~~~l~~~-L~-kr~LlVLDdv~~ 110 (577)
+.+.+. +.-..+.-++|..|+ ..+.|+..+ +... .. ....+..++.+.+... +- .+-++|+|++..
T Consensus 9 l~~~l~-~~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~plf~~~kvvii~~~~~ 87 (343)
T 1jr3_D 9 LRAQLN-EGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPEN 87 (343)
T ss_dssp HHHHHH-HCCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCTTCCHHHHHHHHHHHHHCCSCEEEEEECCSS
T ss_pred HHHHHh-cCCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecCCCCHHHHHHHhcCcCCccCCeEEEEECCCC
Confidence 334444 244557778888874 222333322 1111 00 0124455555544322 22 567888999854
Q ss_pred ---hhhhcccCCCCCCCCCCcEEEEEeCc-------hhhhhcC-CCCceEecCCCCHHHHHHHHHHhhCCCCCCCCCChh
Q 037229 111 ---ELILTQMGVPVPNPKRMSKVLFTTRF-------VEVYGHK-EADEMFRMECLRHEEAWKLFQMKVGKETMDDHSDIP 179 (577)
Q Consensus 111 ---~~~~~~l~~~~~~~~~gsrIivTTR~-------~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~ 179 (577)
...++.+...+.....++.+|++|.. ..+.... .....++..+++.++........+-..... --.
T Consensus 88 kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~~~~g~~---i~~ 164 (343)
T 1jr3_D 88 GPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLE---LDD 164 (343)
T ss_dssp CCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHHHHTTCE---ECH
T ss_pred CCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHHHHcCCC---CCH
Confidence 34566665444444457777777643 2343332 334688999999888887777665322211 113
Q ss_pred HHHHHHHHHcCCCchHHHH
Q 037229 180 KLVEIVTKECGGLPLVLVT 198 (577)
Q Consensus 180 ~~~~~i~~~c~glPLai~~ 198 (577)
+....+++.++|-..++..
T Consensus 165 ~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 165 AANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHHHHHHHSSTTCHHHHHH
T ss_pred HHHHHHHHHhchHHHHHHH
Confidence 5567788888887765543
No 237
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=31.14 E-value=2.9e+02 Score=30.08 Aligned_cols=137 Identities=12% Similarity=0.013 Sum_probs=75.1
Q ss_pred CCccccHHHHHHHHHHhhc-----------C-CCceEEEEEeccc----hhHHHHHHHhCCCcc-----hhc---cCCHH
Q 037229 32 DLTVGLESTFDQVWSCLVE-----------E-EQVGIIGLYGMEG----WIQEQIRRKLGLVDD-----LWA---RKGLE 87 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~-----------~-~~~~vv~I~G~gG----w~~~~i~~~l~~~~~-----~~~---~~~~~ 87 (577)
++++|.+..+++|.+++.. . ....-|.|+|..| -+.+.|+..++...- ... .....
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~~g~~~ 283 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESE 283 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSSTTHHH
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhhhhhHH
Confidence 6789999999999888754 1 3345688999999 266666665543210 000 11122
Q ss_pred HHHHHHHHhcc--ccEEEEEecCCCh----------------hhhcccCCCCCCCCCCcEEEEEeCchhhh-hcC----C
Q 037229 88 EKAMNIFGILS--KEFVLCWMMCGSE----------------LILTQMGVPVPNPKRMSKVLFTTRFVEVY-GHK----E 144 (577)
Q Consensus 88 ~~~~~l~~~L~--kr~LlVLDdv~~~----------------~~~~~l~~~~~~~~~gsrIivTTR~~~v~-~~~----~ 144 (577)
.....+.+... ...++++|++... .++-.+...+.. ..+-.+|.||....-. ... .
T Consensus 284 ~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~-~~~v~vI~atn~~~~ld~al~r~gR 362 (806)
T 1ypw_A 284 SNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ-RAHVIVMAATNRPNSIDPALRRFGR 362 (806)
T ss_dssp HHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCT-TSCCEEEEECSCTTTSCTTTTSTTS
T ss_pred HHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcc-cccEEEecccCCchhcCHHHhcccc
Confidence 22333333333 6789999999421 011111111111 1234555565543321 111 1
Q ss_pred CCceEecCCCCHHHHHHHHHHhhCC
Q 037229 145 ADEMFRMECLRHEEAWKLFQMKVGK 169 (577)
Q Consensus 145 ~~~~~~l~~L~~~~~~~Lf~~~a~~ 169 (577)
-...+.+...+.++-.+++...+-.
T Consensus 363 f~~~i~i~~p~~~~r~~il~~~~~~ 387 (806)
T 1ypw_A 363 FDREVDIGIPDATGRLEILQIHTKN 387 (806)
T ss_dssp SCEEECCCCCCHHHHHHHHHHTTTT
T ss_pred cccccccCCCCHHHHHHHHHHHHhc
Confidence 2345677888888888888876643
No 238
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=28.58 E-value=3.4e+02 Score=24.74 Aligned_cols=136 Identities=10% Similarity=0.052 Sum_probs=75.0
Q ss_pred CCccccHHHHHHHHHHhhcC------------CCceEEEEEeccc----hhHHHHHHHhCCCcc-----hhccCCH---H
Q 037229 32 DLTVGLESTFDQVWSCLVEE------------EQVGIIGLYGMEG----WIQEQIRRKLGLVDD-----LWARKGL---E 87 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~------------~~~~vv~I~G~gG----w~~~~i~~~l~~~~~-----~~~~~~~---~ 87 (577)
+++.|.++.+++|.+.+... .-.+=+.++|..| -+.+.|+..++...- ....... .
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~~~~~~ 89 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESE 89 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTTHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhhhhHHH
Confidence 77899999999988765321 1112289999999 377777776653210 0011111 2
Q ss_pred HHHHHHHHhc-c-ccEEEEEecCCChhh-------------hcccCCCCCC--CCCCcEEEEEeCchhhhhcC-----CC
Q 037229 88 EKAMNIFGIL-S-KEFVLCWMMCGSELI-------------LTQMGVPVPN--PKRMSKVLFTTRFVEVYGHK-----EA 145 (577)
Q Consensus 88 ~~~~~l~~~L-~-kr~LlVLDdv~~~~~-------------~~~l~~~~~~--~~~gsrIivTTR~~~v~~~~-----~~ 145 (577)
.....+.+.. . ...++++|++..... ...+...+.. .....-++.+|...++.... .-
T Consensus 90 ~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRf 169 (274)
T 2x8a_A 90 RAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRL 169 (274)
T ss_dssp HHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSS
T ss_pred HHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccC
Confidence 2233444443 3 578999999965210 0111111111 11234456677766653211 33
Q ss_pred CceEecCCCCHHHHHHHHHHhh
Q 037229 146 DEMFRMECLRHEEAWKLFQMKV 167 (577)
Q Consensus 146 ~~~~~l~~L~~~~~~~Lf~~~a 167 (577)
+..+.+...+.++-.++|....
T Consensus 170 d~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 170 DKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp CEEEECCSCCHHHHHHHHHHHT
T ss_pred CeEEEeCCcCHHHHHHHHHHHH
Confidence 5677888888888888888765
No 239
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=28.36 E-value=49 Score=25.28 Aligned_cols=47 Identities=9% Similarity=0.017 Sum_probs=28.8
Q ss_pred CCCccccc-ccCCCcCcEecccccccccccchHHhcCCCCCcEEEeeeec
Q 037229 357 GILELPKE-LGFLGNLACLNLENTSSHGTITRQLRSNFSKPQVLRMFRFY 405 (577)
Q Consensus 357 ~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lp~~~i~~l~~L~~L~l~~~~ 405 (577)
.++.+..+ |.++.+|+.+.+..+ ++.+....+.++.+|+.+.+....
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~--v~~Ig~~aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN--IGLLYDGMFSGCTALEKLILTGED 54 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT--SSCCCTTSSTTCTTCCCEEECCSC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc--hheEcHHHHhccCCccEEEEcCCC
Confidence 34444433 666677777777654 566665557777777777776543
No 240
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=27.75 E-value=26 Score=30.80 Aligned_cols=51 Identities=12% Similarity=-0.046 Sum_probs=28.8
Q ss_pred HHHHHHHHhcc-ccE-EEEEecCCCh-----hhhcccCCCCCCCCCCcEEEEEeCchh
Q 037229 88 EKAMNIFGILS-KEF-VLCWMMCGSE-----LILTQMGVPVPNPKRMSKVLFTTRFVE 138 (577)
Q Consensus 88 ~~~~~l~~~L~-kr~-LlVLDdv~~~-----~~~~~l~~~~~~~~~gsrIivTTR~~~ 138 (577)
......++.+. .+| |||||++-.. ...+++...+.......-||+|+|...
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 34445566666 455 9999998432 112222222222233567999999753
No 241
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=27.42 E-value=3.3e+02 Score=24.22 Aligned_cols=137 Identities=10% Similarity=-0.040 Sum_probs=72.5
Q ss_pred CCccccHHHHHHHHHHhhc---C--------CCceEEEEEeccc----hhHHHHHHHhCCCcchh---------ccCCHH
Q 037229 32 DLTVGLESTFDQVWSCLVE---E--------EQVGIIGLYGMEG----WIQEQIRRKLGLVDDLW---------ARKGLE 87 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~---~--------~~~~vv~I~G~gG----w~~~~i~~~l~~~~~~~---------~~~~~~ 87 (577)
++++|.+..++++.+.+.. . ...+-+.|+|..| .+.+.++..++...-.. ......
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~~~~~~~ 91 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGAS 91 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCCCCCHH
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHhhhhhHH
Confidence 6799999988887765431 1 1233477999999 37777777765321100 011222
Q ss_pred HHHHHHHHhcc-ccEEEEEecCCChh----------------hhcccCCCCC--CCCCCcEEEEEeCchhhh-hc-C---
Q 037229 88 EKAMNIFGILS-KEFVLCWMMCGSEL----------------ILTQMGVPVP--NPKRMSKVLFTTRFVEVY-GH-K--- 143 (577)
Q Consensus 88 ~~~~~l~~~L~-kr~LlVLDdv~~~~----------------~~~~l~~~~~--~~~~gsrIivTTR~~~v~-~~-~--- 143 (577)
.+...+...-. ...++++|++.... ....+...+. ....+..||.||...+.. .. .
T Consensus 92 ~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~ 171 (257)
T 1lv7_A 92 RVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPG 171 (257)
T ss_dssp HHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTT
T ss_pred HHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCHHHcCCC
Confidence 22323333323 56799999983210 0111111110 112345677777654421 11 1
Q ss_pred CCCceEecCCCCHHHHHHHHHHhhC
Q 037229 144 EADEMFRMECLRHEEAWKLFQMKVG 168 (577)
Q Consensus 144 ~~~~~~~l~~L~~~~~~~Lf~~~a~ 168 (577)
.-...+.+...+.++-.+++..++-
T Consensus 172 rf~~~i~i~~P~~~~r~~il~~~~~ 196 (257)
T 1lv7_A 172 RFDRQVVVGLPDVRGREQILKVHMR 196 (257)
T ss_dssp SSCEEEECCCCCHHHHHHHHHHHHT
T ss_pred cCCeEEEeCCCCHHHHHHHHHHHHh
Confidence 1234677877888877777776653
No 242
>2gkw_B Tumor necrosis factor receptor superfamily member; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens}
Probab=26.90 E-value=44 Score=17.88 Aligned_cols=18 Identities=39% Similarity=0.445 Sum_probs=14.3
Q ss_pred CCCCCCCCcEEEEEeCch
Q 037229 120 PVPNPKRMSKVLFTTRFV 137 (577)
Q Consensus 120 ~~~~~~~gsrIivTTR~~ 137 (577)
++|....|+-|+|||...
T Consensus 3 PlPa~eeGaT~lVtTKT~ 20 (26)
T 2gkw_B 3 PVPATELGSTELVTTKTA 20 (26)
T ss_pred cccccccCceEEEEeccC
Confidence 567677899999999754
No 243
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=24.27 E-value=5.6e+02 Score=25.85 Aligned_cols=158 Identities=10% Similarity=0.068 Sum_probs=85.5
Q ss_pred CCccccHHHHHHHHHHhhc---C---C-----CceEEEEEeccc----hhHHHHHHHhCCCcc-----hhccCCHHHHHH
Q 037229 32 DLTVGLESTFDQVWSCLVE---E---E-----QVGIIGLYGMEG----WIQEQIRRKLGLVDD-----LWARKGLEEKAM 91 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~---~---~-----~~~vv~I~G~gG----w~~~~i~~~l~~~~~-----~~~~~~~~~~~~ 91 (577)
++++|.++.++++.+.... . . -.+=+.|+|..| -+.+.|+..+....- ............
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~g~~~~ 110 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAA 110 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCTTHHHH
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhhhhHHH
Confidence 7899999988887765432 1 1 112388999999 377777777653211 011111222334
Q ss_pred HHHHhcc--c---cEEEEEecCCCh------------hh----hcccCCCCCC--CCCCcEEEEEeCchhhhhc--C---
Q 037229 92 NIFGILS--K---EFVLCWMMCGSE------------LI----LTQMGVPVPN--PKRMSKVLFTTRFVEVYGH--K--- 143 (577)
Q Consensus 92 ~l~~~L~--k---r~LlVLDdv~~~------------~~----~~~l~~~~~~--~~~gsrIivTTR~~~v~~~--~--- 143 (577)
.++..+. + ..++++|++... ++ ...+...+.. ...+..|+.||...++... .
T Consensus 111 ~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~aLlr~g 190 (499)
T 2dhr_A 111 RVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPG 190 (499)
T ss_dssp HHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTT
T ss_pred HHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCccccccc
Confidence 4555555 3 379999999431 01 1122111211 1223455666666655321 1
Q ss_pred CCCceEecCCCCHHHHHHHHHHhhCCCCCCCCCChhHHHHHHHHHcCCCc
Q 037229 144 EADEMFRMECLRHEEAWKLFQMKVGKETMDDHSDIPKLVEIVTKECGGLP 193 (577)
Q Consensus 144 ~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~i~~~c~glP 193 (577)
.-+..+.+...+.++-.+++..++-......... ...++..+.|+.
T Consensus 191 Rfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 191 RFDRQIAIDAPDVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFV 236 (499)
T ss_dssp SSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSST----THHHHTTSCSCC
T ss_pred ccceEEecCCCCHHHHHHHHHHHHhcCCCChHHH----HHHHHHhcCCCC
Confidence 1245788888888888888877653322111111 234666677765
No 244
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=23.41 E-value=2.9e+02 Score=28.39 Aligned_cols=132 Identities=13% Similarity=0.019 Sum_probs=68.9
Q ss_pred CccccHHHHHHHHHHhhcC-----CCceEEEEEeccc----hhHHHHHHHhCCCcchhccC---CH-----------HHH
Q 037229 33 LTVGLESTFDQVWSCLVEE-----EQVGIIGLYGMEG----WIQEQIRRKLGLVDDLWARK---GL-----------EEK 89 (577)
Q Consensus 33 ~~vGr~~~~~~i~~~L~~~-----~~~~vv~I~G~gG----w~~~~i~~~l~~~~~~~~~~---~~-----------~~~ 89 (577)
+++|.+..++.+.+.+.-. ..-.++.++|..| -+.+.|+..+.......... +. ...
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~ 161 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAM 161 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC------------------
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccC
Confidence 4789999888887655432 2346899999999 26666666664321100000 00 011
Q ss_pred HHHHHH---hcc-ccEEEEEecCCChh------hhcccCCCCCC--------CC-------CCcEEEEEeCchhh-----
Q 037229 90 AMNIFG---ILS-KEFVLCWMMCGSEL------ILTQMGVPVPN--------PK-------RMSKVLFTTRFVEV----- 139 (577)
Q Consensus 90 ~~~l~~---~L~-kr~LlVLDdv~~~~------~~~~l~~~~~~--------~~-------~gsrIivTTR~~~v----- 139 (577)
...+.+ ... ..-++++|++.... ....+...+.. .. ...+||.||.....
T Consensus 162 ~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL 241 (543)
T 3m6a_A 162 PGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPL 241 (543)
T ss_dssp --CHHHHHHTTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHH
T ss_pred chHHHHHHHHhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHH
Confidence 111222 222 34488899997531 11222222211 00 23456666654332
Q ss_pred hhcCCCCceEecCCCCHHHHHHHHHHhh
Q 037229 140 YGHKEADEMFRMECLRHEEAWKLFQMKV 167 (577)
Q Consensus 140 ~~~~~~~~~~~l~~L~~~~~~~Lf~~~a 167 (577)
...+ ..+.+..++.++-.+++..+.
T Consensus 242 ~~R~---~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 242 RDRM---EIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp HHHE---EEEECCCCCHHHHHHHHHHTH
T ss_pred Hhhc---ceeeeCCCCHHHHHHHHHHHH
Confidence 2222 367888888888888877754
No 245
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=23.04 E-value=2.2e+02 Score=30.65 Aligned_cols=44 Identities=20% Similarity=0.324 Sum_probs=31.8
Q ss_pred CCccccHHHHHHHHHHhhcC--------CCceEEEEEeccc----hhHHHHHHHhC
Q 037229 32 DLTVGLESTFDQVWSCLVEE--------EQVGIIGLYGMEG----WIQEQIRRKLG 75 (577)
Q Consensus 32 ~~~vGr~~~~~~i~~~L~~~--------~~~~vv~I~G~gG----w~~~~i~~~l~ 75 (577)
..++|.+..++.+...+... .....+-++|..| .+.+.++..++
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~ 513 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc
Confidence 46899999999888877642 1234788999999 36666666664
Done!