Query 037230
Match_columns 815
No_of_seqs 400 out of 893
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 10:04:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037230.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037230hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03122 Poly [ADP-ribose] pol 100.0 1E-213 2E-218 1860.4 69.0 813 2-815 1-815 (815)
2 PLN03123 poly [ADP-ribose] pol 100.0 8E-188 2E-192 1671.2 67.0 717 55-808 243-981 (981)
3 PLN03124 poly [ADP-ribose] pol 100.0 5E-131 1E-135 1132.1 45.5 489 302-808 142-642 (643)
4 cd01437 parp_like Poly(ADP-rib 100.0 3.3E-93 7.2E-98 778.7 32.8 341 452-803 1-347 (347)
5 KOG1037 NAD+ ADP-ribosyltransf 100.0 4.2E-65 9.1E-70 583.2 12.9 465 325-813 59-530 (531)
6 PF00644 PARP: Poly(ADP-ribose 100.0 3.2E-45 7E-50 377.1 12.6 205 589-804 1-206 (206)
7 cd01438 tankyrase_like Tankyra 100.0 6.5E-36 1.4E-40 305.8 15.1 182 588-804 13-220 (223)
8 PF02877 PARP_reg: Poly(ADP-ri 100.0 7.2E-32 1.6E-36 259.1 13.2 129 452-587 1-133 (133)
9 cd08003 WGR_PARP2_like WGR dom 100.0 4E-31 8.6E-36 241.8 11.8 101 327-432 1-103 (103)
10 cd08001 WGR_PARP1_like WGR dom 100.0 2.5E-28 5.5E-33 225.0 11.8 103 326-432 1-104 (104)
11 cd08002 WGR_PARP3_like WGR dom 99.9 1.4E-27 3.1E-32 217.5 11.4 98 325-432 2-100 (100)
12 cd07997 WGR_PARP WGR domain of 99.9 1.5E-25 3.3E-30 205.8 11.0 100 328-432 2-102 (102)
13 cd01341 ADP_ribosyl ADP_ribosy 99.9 2.3E-25 4.9E-30 215.4 8.3 120 653-798 1-137 (137)
14 cd01439 TCCD_inducible_PARP_li 99.9 2.4E-24 5.3E-29 203.7 9.3 112 653-802 1-121 (121)
15 PF08063 PADR1: PADR1 (NUC008) 99.9 3.7E-23 7.9E-28 167.5 2.2 53 98-150 1-54 (55)
16 smart00773 WGR Proposed nuclei 99.7 5E-18 1.1E-22 150.6 10.3 82 332-418 2-83 (84)
17 PF05406 WGR: WGR domain; Int 99.7 3.2E-17 6.8E-22 144.5 9.0 79 333-418 2-80 (81)
18 cd07994 WGR WGR domain. The WG 99.6 8.1E-16 1.8E-20 132.8 9.2 69 338-409 2-71 (73)
19 cd07996 WGR_MMR_like WGR domai 99.3 3.5E-12 7.7E-17 110.4 8.7 70 338-409 2-71 (74)
20 PF00533 BRCT: BRCA1 C Terminu 99.1 1.6E-10 3.5E-15 99.5 7.4 75 187-264 3-78 (78)
21 PF12738 PTCB-BRCT: twin BRCT 99.0 5E-10 1.1E-14 93.7 5.2 62 193-259 1-63 (63)
22 COG0272 Lig NAD-dependent DNA 99.0 9.1E-10 2E-14 128.1 8.2 72 188-264 593-666 (667)
23 PRK06063 DNA polymerase III su 98.9 2.2E-09 4.7E-14 117.9 9.1 74 189-265 232-306 (313)
24 PRK14350 ligA NAD-dependent DN 98.9 1.6E-09 3.4E-14 129.0 8.3 73 188-265 592-666 (669)
25 cd00027 BRCT Breast Cancer Sup 98.9 3E-09 6.6E-14 88.4 7.7 70 192-265 1-72 (72)
26 smart00292 BRCT breast cancer 98.9 7.2E-09 1.6E-13 88.2 7.6 76 188-266 1-79 (80)
27 PRK06195 DNA polymerase III su 98.8 7.5E-09 1.6E-13 113.6 7.7 78 187-265 218-307 (309)
28 PRK14351 ligA NAD-dependent DN 98.7 1.8E-08 3.8E-13 120.6 8.5 75 188-266 608-684 (689)
29 PRK07956 ligA NAD-dependent DN 98.7 3.5E-08 7.5E-13 118.1 8.3 72 189-265 590-663 (665)
30 TIGR00575 dnlj DNA ligase, NAD 98.6 5.8E-08 1.2E-12 116.1 7.3 68 188-260 583-652 (652)
31 COG5275 BRCT domain type II [G 98.5 2.3E-07 5E-12 93.5 7.4 76 187-266 154-231 (276)
32 COG3831 Uncharacterized conser 98.3 2.8E-06 6E-11 74.5 7.3 66 337-409 2-67 (85)
33 KOG3226 DNA repair protein [Re 97.9 1.1E-05 2.5E-10 87.2 5.4 88 187-279 315-403 (508)
34 cd07998 WGR_DNA_ligase WGR dom 97.9 8.7E-05 1.9E-09 64.5 9.2 60 348-409 11-72 (77)
35 KOG1929 Nucleotide excision re 97.5 0.00012 2.5E-09 88.6 5.6 89 187-279 101-190 (811)
36 PRK05601 DNA polymerase III su 96.5 0.0039 8.3E-08 69.6 6.3 77 187-266 292-369 (377)
37 KOG1037 NAD+ ADP-ribosyltransf 96.5 0.001 2.2E-08 78.1 1.9 105 55-159 321-427 (531)
38 KOG0966 ATP-dependent DNA liga 96.4 0.0061 1.3E-07 72.5 7.2 91 184-277 628-721 (881)
39 KOG1929 Nucleotide excision re 95.4 0.019 4.1E-07 70.0 5.7 88 187-279 491-579 (811)
40 KOG2043 Signaling protein SWIF 94.8 0.038 8.1E-07 68.5 5.9 78 195-278 662-739 (896)
41 KOG3548 DNA damage checkpoint 94.7 0.032 7E-07 67.4 4.7 88 188-279 924-1037(1176)
42 KOG0323 TFIIF-interacting CTD 91.1 0.1 2.3E-06 62.1 1.8 87 187-278 439-531 (635)
43 COG5163 NOP7 Protein required 90.4 0.36 7.8E-06 53.7 4.9 92 188-292 349-452 (591)
44 KOG2481 Protein required for n 88.5 0.58 1.3E-05 53.9 4.9 81 188-279 326-417 (570)
45 KOG3524 Predicted guanine nucl 85.6 0.51 1.1E-05 56.0 2.5 75 187-268 116-191 (850)
46 PF02037 SAP: SAP domain; Int 80.0 2.8 6E-05 31.1 3.7 32 74-105 3-34 (35)
47 smart00513 SAP Putative DNA-bi 78.8 3.8 8.3E-05 30.2 4.1 32 74-105 3-34 (35)
48 PF15633 Tox-ART-HYD1: HYD1 si 77.7 1.1 2.3E-05 41.1 1.1 41 654-696 1-41 (96)
49 PF13151 DUF3990: Protein of u 76.5 2.9 6.3E-05 41.6 3.9 61 652-721 1-61 (154)
50 KOG4177 Ankyrin [Cell wall/mem 72.9 1.2 2.5E-05 56.8 0.1 112 626-747 998-1131(1143)
51 KOG1968 Replication factor C, 72.9 2.7 5.9E-05 52.5 3.2 74 187-265 171-246 (871)
52 PF01396 zf-C4_Topoisom: Topoi 72.0 3.4 7.3E-05 31.5 2.4 31 112-146 2-36 (39)
53 smart00778 Prim_Zn_Ribbon Zinc 71.9 2.8 6.1E-05 31.7 1.9 22 110-131 2-29 (37)
54 COG2824 PhnA Uncharacterized Z 69.0 3.9 8.5E-05 37.8 2.5 30 110-139 2-32 (112)
55 PRK00420 hypothetical protein; 68.7 3.6 7.8E-05 38.8 2.3 40 94-133 3-46 (112)
56 PRK08665 ribonucleotide-diphos 68.7 7.4 0.00016 48.3 5.7 28 112-141 725-752 (752)
57 KOG3524 Predicted guanine nucl 66.0 3.7 8E-05 49.1 2.2 86 188-278 209-294 (850)
58 PF08273 Prim_Zn_Ribbon: Zinc- 65.1 2.7 5.9E-05 32.3 0.6 22 111-132 3-31 (40)
59 PRK10220 hypothetical protein; 65.0 5.5 0.00012 37.1 2.6 31 110-140 2-33 (111)
60 PF11781 RRN7: RNA polymerase 64.3 6.4 0.00014 29.5 2.5 22 109-130 6-28 (36)
61 PF03119 DNA_ligase_ZBD: NAD-d 64.0 6.1 0.00013 27.9 2.2 21 113-133 1-23 (28)
62 TIGR00686 phnA alkylphosphonat 60.6 7.1 0.00015 36.4 2.5 31 111-141 2-33 (109)
63 PRK14724 DNA topoisomerase III 57.3 7.7 0.00017 49.6 3.0 33 111-143 755-791 (987)
64 PRK08173 DNA topoisomerase III 57.1 8.6 0.00019 48.5 3.3 35 110-144 725-759 (862)
65 COG1645 Uncharacterized Zn-fin 50.9 14 0.00031 35.7 3.0 43 90-132 4-49 (131)
66 PRK08173 DNA topoisomerase III 50.4 8.4 0.00018 48.5 1.8 26 112-144 625-650 (862)
67 TIGR03655 anti_R_Lar restricti 49.1 11 0.00024 30.4 1.7 10 111-120 1-10 (53)
68 PRK00819 RNA 2'-phosphotransfe 48.4 7.5 0.00016 39.7 0.7 23 652-674 95-117 (179)
69 KOG4362 Transcriptional regula 46.9 26 0.00057 42.5 5.0 85 193-280 479-565 (684)
70 COG1571 Predicted DNA-binding 46.2 11 0.00024 43.2 1.7 39 112-161 351-390 (421)
71 KOG3548 DNA damage checkpoint 44.9 37 0.0008 42.4 5.8 77 189-270 1070-1158(1176)
72 PRK14724 DNA topoisomerase III 41.6 16 0.00034 46.9 2.2 33 112-144 644-676 (987)
73 PF08274 PhnA_Zn_Ribbon: PhnA 39.2 21 0.00045 25.8 1.6 27 111-137 2-29 (30)
74 PF08271 TF_Zn_Ribbon: TFIIB z 39.1 29 0.00063 26.7 2.6 19 113-131 2-23 (43)
75 PF07295 DUF1451: Protein of u 35.4 19 0.00041 35.6 1.3 64 57-120 67-139 (146)
76 PF10087 DUF2325: Uncharacteri 34.8 56 0.0012 29.6 4.2 63 195-257 2-81 (97)
77 KOG0966 ATP-dependent DNA liga 33.6 55 0.0012 40.4 4.9 85 189-276 784-881 (881)
78 PRK10445 endonuclease VIII; Pr 32.4 29 0.00063 37.5 2.2 28 105-132 228-260 (263)
79 COG1656 Uncharacterized conser 32.1 33 0.00072 34.5 2.3 33 93-125 75-111 (165)
80 cd01436 Dipth_tox_like Mono-AD 31.6 39 0.00085 32.2 2.6 48 655-704 3-51 (147)
81 PF08792 A2L_zn_ribbon: A2L zi 30.7 38 0.00082 25.0 1.9 21 111-131 3-25 (33)
82 PRK01103 formamidopyrimidine/5 30.2 32 0.0007 37.4 2.1 27 106-132 239-270 (274)
83 PRK11827 hypothetical protein; 29.7 35 0.00076 28.7 1.8 15 111-125 8-22 (60)
84 PRK08332 ribonucleotide-diphos 29.7 32 0.00068 46.4 2.2 29 112-142 1705-1739(1740)
85 PRK14811 formamidopyrimidine-D 29.6 35 0.00075 37.1 2.2 27 106-132 229-260 (269)
86 PF01885 PTS_2-RNA: RNA 2'-pho 29.4 22 0.00049 36.5 0.7 34 651-694 105-138 (186)
87 PF06677 Auto_anti-p27: Sjogre 29.2 46 0.001 25.8 2.2 32 100-131 3-38 (41)
88 TIGR01057 topA_arch DNA topois 28.3 37 0.00079 41.4 2.4 23 111-133 589-615 (618)
89 PF06906 DUF1272: Protein of u 28.2 36 0.00077 28.2 1.5 19 101-122 34-52 (57)
90 TIGR00577 fpg formamidopyrimid 27.9 39 0.00084 36.8 2.3 27 106-132 239-270 (272)
91 COG2835 Uncharacterized conser 27.6 45 0.00098 28.0 2.0 21 111-131 8-30 (60)
92 PF13408 Zn_ribbon_recom: Reco 27.1 54 0.0012 26.2 2.5 35 108-142 2-41 (58)
93 TIGR00578 ku70 ATP-dependent D 26.9 99 0.0021 37.5 5.6 47 58-106 537-583 (584)
94 PRK13945 formamidopyrimidine-D 26.6 41 0.00089 36.8 2.2 27 106-132 248-279 (282)
95 COG3813 Uncharacterized protei 26.2 31 0.00067 29.9 0.9 23 100-122 30-52 (84)
96 PRK14810 formamidopyrimidine-D 26.1 44 0.00096 36.3 2.3 26 106-131 238-268 (272)
97 PRK09710 lar restriction allev 25.7 40 0.00088 28.6 1.4 15 106-120 1-15 (64)
98 PF13913 zf-C2HC_2: zinc-finge 25.2 44 0.00094 22.9 1.3 11 111-121 2-12 (25)
99 PRK11032 hypothetical protein; 24.9 42 0.00091 33.7 1.7 62 57-119 79-150 (160)
100 COG1888 Uncharacterized protei 24.8 1.1E+02 0.0023 28.0 3.9 33 188-221 46-78 (97)
101 COG1859 KptA RNA:NAD 2'-phosph 23.6 38 0.00083 35.4 1.1 25 650-674 119-143 (211)
102 PRK07220 DNA topoisomerase I; 23.5 54 0.0012 40.9 2.6 32 111-146 589-625 (740)
103 PF02680 DUF211: Uncharacteriz 23.3 1.1E+02 0.0025 28.0 3.9 41 189-234 45-85 (95)
104 COG2888 Predicted Zn-ribbon RN 23.2 52 0.0011 27.6 1.6 20 112-131 28-54 (61)
105 PF04723 GRDA: Glycine reducta 23.0 1.9E+02 0.0042 28.3 5.6 44 189-234 2-46 (150)
106 PHA00626 hypothetical protein 22.4 61 0.0013 26.8 1.8 19 113-131 2-27 (59)
107 PF07191 zinc-ribbons_6: zinc- 21.7 76 0.0016 27.6 2.4 25 113-137 3-27 (70)
108 PRK14973 DNA topoisomerase I; 20.6 60 0.0013 41.5 2.2 30 111-144 588-621 (936)
109 PRK07219 DNA topoisomerase I; 20.5 89 0.0019 39.5 3.7 33 111-147 602-639 (822)
110 PF12672 DUF3793: Protein of u 20.3 1.1E+02 0.0024 31.1 3.7 62 68-133 63-136 (176)
111 PF12949 HeH: HeH/LEM domain; 20.2 93 0.002 23.3 2.3 28 74-101 3-32 (35)
112 cd04476 RPA1_DBD_C RPA1_DBD_C: 20.0 53 0.0011 32.7 1.3 31 112-149 35-66 (166)
No 1
>PLN03122 Poly [ADP-ribose] polymerase; Provisional
Probab=100.00 E-value=9.7e-214 Score=1860.41 Aligned_cols=813 Identities=78% Similarity=1.257 Sum_probs=751.9
Q ss_pred cccccccccCCC-chhHhhhhHhhHhhhcccccccCCccccccccC-CCCCCccccchHHHHHHHHHHHHHHHhcCCHHH
Q 037230 2 KVHETRSHAHAS-SDEEKVMTRKQKAENKTQEATETPPKKTKQENN-GNGGHANGKRSGDVTAEFEEFCKSIEGQLSAEQ 79 (815)
Q Consensus 2 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~k~q~~~lw~~~d~l~~~~~~~~ 79 (815)
||||||||+||+ ++|+|+|+||||||+|+||+||+ |+|+|+++. +.+++.++++...|+++||+|||+|+++||.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~d~l~~~~s~~~ 79 (815)
T PLN03122 1 KVHETRSQAHAPAAEEGKGGTRKQKAENKEHEGEQS-PKKAKKEKKQDDSGNGNGKSAEDAVKEFEEFCKAIEEHLSIEQ 79 (815)
T ss_pred CcccccccccccchhhhcccchhhhccccccccccC-chhhhhhcccccCCcccccCHHHHHHHHHHHHHHHHhhCCHHH
Confidence 799999999999 99999999999999999999999 888766651 236777778899999999999999999999999
Q ss_pred HHHHHHHhCCCCCCChHHHHHHhhhhhhcCCCCCCCCCCCeeEEeCceeEeecCCcCccccccccCCCCCCCCCccCCcc
Q 037230 80 MREILELNGQDSSGSDVAVVTKCLDMLFYGPLDKCPVCNGNLEFDGKRYSCKGMYSEWSTCTFRTKDPPRKQEPTKLPDS 159 (815)
Q Consensus 80 l~~lL~~N~q~~~~~~~~ll~~~aD~~~fG~l~~Cp~C~g~l~~~~~~Y~C~G~~sewtkC~~~~~~p~R~~~~~kiP~~ 159 (815)
|++||++|+|.++++++.|++||||+|+||+|++||.|+|+|+|++++|+|+|||||||||+|+|++|+|++++|+||++
T Consensus 80 l~~~L~~N~q~~~~~~~~~~~~~aD~m~fG~l~~Cp~C~g~l~~~g~~Y~C~G~iSeWtKC~y~T~~P~R~~~~~kiP~e 159 (815)
T PLN03122 80 MREILEENGQDSSGSDDAVLPRCQDQLFYGPLEKCPLCGGALECDGHRYTCTGFISEWSSCTFSTKNPPRKEEPLKIPDS 159 (815)
T ss_pred HHHHHHHcCCCCCCcHHHHHHHHhHHHhhcCCCCCCCCCCeEEEcCCeeEeccccCCCcccccccCCCCcccCcccCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997779999999
Q ss_pred cCCcccchhhcccCCCCCCCccccCCCCCCCCCcEEEEeeccccchHHHHHHHHHcCCEEEeeccceeEEEeChHHHhcC
Q 037230 160 VLNSPISDLAKRYQDPSHRPRRDVGAAVKPFTGMTISLMGRLSRTHQYWRTTIEKHGGKVAASPIGLTCLVASPAERERG 239 (815)
Q Consensus 160 ~~~~fl~~~~~~~~~~~~~p~r~~~p~~~~L~g~~~~isG~l~~~r~elk~~Ie~~GG~v~~~vs~~thlI~t~~e~~k~ 239 (815)
+++.||++|+++++++..+|.|...|+.+||.|++|+|+|+|+.+|++++++|+++||+|+++|+++||+|++.++++++
T Consensus 160 ~k~~fl~~~k~~~~~~~~~p~~~~~~~~kpL~G~~fviTGtl~~sr~elK~~Ie~~GGkvsssVs~~T~lIvt~~ev~k~ 239 (815)
T PLN03122 160 VKNSFITKLLKKHQDPSKRPKRELGAPGKPFSGMMISLSGRLSRTHQYWKKDIEKHGGKVANSVEGVTCLVVSPAERERG 239 (815)
T ss_pred HHHHHHHHhcccccccccCccccccccCCCcCCcEEEEeCCCCCCHHHHHHHHHHcCCEEccccccceEEEEcCcccccc
Confidence 99889999999888888888887778888999999999999998999999999999999999999777889999888776
Q ss_pred CchhHHHHHHcCCcEechhHHHHHhhhcCCCCCcccccccCCCCCCCCCCCCCCCCChHHHHHHHHHHHHhcCccCCCCC
Q 037230 240 GSSKLVEAMERGTRVVSEAWLIDSIEKQEAQPLEAYDLVTDLAPDSKGIPWDKMDPSEEAIESIAAELKLYGKRGVYKDT 319 (815)
Q Consensus 240 ~s~K~~~A~~~gI~IVsed~L~d~~~~~~~l~~~~Y~i~s~~~~~~~~~~~~k~d~~~~~~~s~~~k~k~kg~~~Vd~~s 319 (815)
+++|+++|+++|||||+|+||.+|+..++.+++.+|.+.++...+++..||.+.+++..+..+...+++++|+++||++|
T Consensus 240 gsSKlkkAk~lgIpIVsEd~L~d~i~~~k~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~~~~V~~~~ 319 (815)
T PLN03122 240 GSSKIAEAMERGIPVVREAWLIDSIEKQEAQPLEAYDVVSDLSVEGRGIPWDKQDPSEEAIESLSAELKLYGKRGVYKDS 319 (815)
T ss_pred CccHHHHHHHcCCcCccHHHHHHHHhcCCcccchhhhhccccccccccCcccccCCcccccccccchhccccCcCCCccc
Confidence 45899999999999999999999999999999999999866656667778887665554434456678889999999999
Q ss_pred ccccCCceEEEeCCeEEEEEEeeecCCCCcccEEEEEEEEcCCCCeEEEEEeeccCCCCcccccccCCCCHHHHHHHHHH
Q 037230 320 KLQEQGGKILEKDGILYNCAFSLCDQGRGMNLYCIVQLITVPDSNLHLYYKKGKVGDDPNAEERLEEWTGVDNAIKEFVR 399 (815)
Q Consensus 320 ~l~~~~~hVy~d~~~~Y~~~L~~tDi~~~~NkfY~lQlle~~~~~y~vf~~wGRVG~~~~g~~k~~~~~s~e~Ai~~F~k 399 (815)
++...++|||+++|.+|+|+|++||+++|+|+||+||||+++.+.||||+||||||+.|.+++++++|.++++|+.+|++
T Consensus 320 ~l~~~~~~V~~~~~~iYd~~Lnqtd~~~n~NkfY~iQlL~~~~~~y~~~~rWGRVG~~gq~~~~~~~~~~~~~Ai~~F~k 399 (815)
T PLN03122 320 KLQEEGGKIFEKDGILYNCAFSICDLGRGLNEYCIMQLITVPDSNLHLYYKKGRVGDDPNAEERLEEWEDVDAAIKEFVR 399 (815)
T ss_pred ccccCccEEEecCCeEeeeeeeeeeccCCCcceEEEEEEEcCCCcEEEEeeecccCCcCCCccccCCCCCHHHHHHHHHH
Confidence 98845999999999999999999999999999999999998777899999999999987667788999999999999999
Q ss_pred HHHHHhcCCCccccccccCccCCCCccccccCCccccccCCCCcccccccCCCCCCCHHHHHHHHHHhCHHHHHHHHHHc
Q 037230 400 LFEEVTGNEFEPWEREKKFQKKPLKFYPIDMDDGVEVRHGGLGMRQLGVAAAHSKLDPVVANFMKVLCSQEVYRYALMEM 479 (815)
Q Consensus 400 ~F~eKTgn~w~~w~~r~~f~k~pgKy~~v~~d~~~~~~~~~~~~~~~~~~~~~s~L~~~Vq~Li~~I~d~~~~~~~~~e~ 479 (815)
+|++||||+|++|++|.+|+++||||+|+++||+.+++.+.....+.+....+|+|+++||+||++|||+++|+++|++|
T Consensus 400 kF~eKTgn~~~~w~~r~~F~k~pgky~~id~d~~~~~~~~~~~~~~~~~~~~~skL~~~Vq~L~~lIfd~~~m~~~m~e~ 479 (815)
T PLN03122 400 LFEEITGNEFEPWEREKKFEKKRLKFYPIDMDDGVDVRAGGLGLRQLGVAAAHCKLDPKVANFMKVLCSQEIYRYAMMEM 479 (815)
T ss_pred HHHHHhCCCccccccccCccccCCCCceeeccccccccccccchhhcccccCCCCCCHHHHHHHHHHcCHHHHHHHHHHc
Confidence 99999999999999999999999999999999998765433233333345678999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhccccccCCCCccCCCHHHHHHHHHHHHHH
Q 037230 480 GLDAPDLPIGMLSNVHLNRCEEVLQQFIEAVKSTKETGQKAEAIWTDFSNRWFTLMHSLRPFIFRDNQEIADHAASSFEA 559 (815)
Q Consensus 480 ~~d~~k~PLGkLS~~qI~~a~~vL~ei~~~l~~~~~~~~~~~~~l~~lsn~fYtlIPh~~p~~i~~~~~l~~k~~~lle~ 559 (815)
+||+.+||||+||+.||.+||+||.+|+++|.+........+..+.+|||+|||+|||.+||+|+|.+.|++|+++|||+
T Consensus 480 ~~D~~kmPLGKLSk~qI~~g~~vL~ei~~~l~~~~~~~~~~~~~~~dlSnrfYTlIPh~~ppvi~~~~~lk~k~~~mLe~ 559 (815)
T PLN03122 480 GLDSPDLPMGMLSDFHLKRCEEVLLEFAEFVKSEKETGQKAEAMWLDFSNKWFSLVHSTRPFVIRDIDELADHAASALET 559 (815)
T ss_pred CCCcccCCCCcCCHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHhccceeccCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998765433334467999999999999999999999999999994499999
Q ss_pred HHHHHHHHHhhhcccCCCCCCcchhhhhhcCceeEEcCCCCHHHHHHHHHHHhccCCCccCCcccccccceeeeEecCCc
Q 037230 560 VRDITVASHLIGDMSGSTLDDPLSDCYEKLACSISALEKDSDDYKMIVNYLEKTYEPVKLGDIEYGVSVDNIFVIESNAQ 639 (815)
Q Consensus 560 L~die~A~~ll~~~~~~~~~~pld~~Y~~L~~~i~~L~~~s~ey~~I~~y~~~t~~~~h~~~~~~~~~I~~If~v~r~~~ 639 (815)
|.||++|++|+++....+..||||.+|++|+|+|+||+++|+||++|++|+.+||++||+++..|+++|.+||+|+|.+.
T Consensus 560 L~DIeiA~~ll~~~~~~~~~~pLd~~Y~~L~~~i~pLd~~S~eyk~I~~Yl~nT~~~th~~~~~y~l~v~~IF~veR~ge 639 (815)
T PLN03122 560 VRDINVASRLIGDMTGSTLDDPLSDRYKKLGCSISPVDKESDDYKMIVKYLEKTYEPVKVGDVSYSVSVENIFAVESSAG 639 (815)
T ss_pred HHHHHHHHHHHhhccccccCCchHHHHHhcCceEEEcCCCCHHHHHHHHHHHhcCCCccccCcccceeEeEEEEeccCcc
Confidence 99999999999764445678999999999999999999999999999999999999999766789999999999999997
Q ss_pred cchhhhhcCCCceeeeccCCccchhhhcccCCCCCCCCCCCCCceeeeeeeechhhhhhhcccccCCCCCceEEEEEEEe
Q 037230 640 PSLDEIKKLPNKVLLWCGTRSSNLLRHLQKGFLPASCSLPVPGYMFGRAIVCSDAAAEAARYGFTAADRPEGFLVLAVAS 719 (815)
Q Consensus 640 ~~f~~~~~~~N~~lLwHGSr~~N~~gIL~~Gl~iap~~a~~tG~mFGkGIYFAd~~skS~~Yc~~~~~~~~~~mlLceVa 719 (815)
+||.+|++++||+|||||||.+||+|||+||||||||+||+||||||||||||||+||||+||+++.++++|+|||||||
T Consensus 640 ~rf~~~~~l~NR~LLWHGSR~tN~~gILsqGLRIAPPEAPvtGYMFGKGIYFAD~~SKSAnYC~t~~~~~~GlLlLcEVA 719 (815)
T PLN03122 640 PSLDEIKKLPNKVLLWCGTRSSNLLRHLAKGFLPAVCSLPVPGYMFGKAIVCSDAAAEAARYGFTAVDRPEGFLVLAVAS 719 (815)
T ss_pred ccchhhcCCCCceEEeccchhhhHHHHhhCCCccCCcccCCCCCccCCeeEecchhhhhhhhhccccCCCcceEEEEHhh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceeccCCCCcCccCCCCCcceeeeccccCCCCCceeecCCeEecCCCcccCCCCCCCCCCceEEEecCCCcceeeE
Q 037230 720 LGDQVTELKKPPEDTKSLEDKKLGVKGLGRKKTDESEHFFWNDDIKVPGGRLIPSEHKNSPLEYNEYAVYDPKQTSIRFL 799 (815)
Q Consensus 720 LG~~~~e~~~~~~~~~~~p~G~~Sv~g~G~~~Pdp~~~~~~~dgv~vP~G~~~~~~~~~~~l~ynEyIVYd~~Qv~~rYL 799 (815)
||++++|+..++.++.++|+|+|||+|+|++.|||+++++|+|||.||+|+++++...+++|.||||||||++|||||||
T Consensus 720 LG~~~~el~~~~~~~~~~~~g~~Stkg~G~~~Pdp~~~~~~~dgV~VP~Gk~~~~~~~~~~L~yNEYIVYDvaQvrirYL 799 (815)
T PLN03122 720 LGDEVLELTKPPEDVKSYEEKKVGVKGLGRKKTDESEHFKWRDDITVPCGRLIPSEHKDSPLEYNEYAVYDPKQVSIRFL 799 (815)
T ss_pred cCchHHHhhcCchhhhccCCCCceeeecCCCcCCCccceecCCCeEEeCCCCccCCCCCcccccCceEEEchhHEEEEEE
Confidence 99944899999668899999999999999999999999999999999999999988878899999999999999999999
Q ss_pred EEEEeccccccccCCC
Q 037230 800 VGVKFEERGVEMEPAE 815 (815)
Q Consensus 800 v~~~~~~~~~~~~~~~ 815 (815)
|+|+|+|+++|||++|
T Consensus 800 ~~vkf~~~~~~~~~~~ 815 (815)
T PLN03122 800 VGVKYEEKGAEMVTAE 815 (815)
T ss_pred EEEEeecceeEeecCC
Confidence 9999999999999987
No 2
>PLN03123 poly [ADP-ribose] polymerase; Provisional
Probab=100.00 E-value=7.9e-188 Score=1671.23 Aligned_cols=717 Identities=34% Similarity=0.617 Sum_probs=667.8
Q ss_pred cchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhhhcCCCCCCCCCCCeeEEeCceeEeecCC
Q 037230 55 KRSGDVTAEFEEFCKSIEGQLSAEQMREILELNGQDSSGSDVAVVTKCLDMLFYGPLDKCPVCNGNLEFDGKRYSCKGMY 134 (815)
Q Consensus 55 ~~~k~q~~~lw~~~d~l~~~~~~~~l~~lL~~N~q~~~~~~~~ll~~~aD~~~fG~l~~Cp~C~g~l~~~~~~Y~C~G~~ 134 (815)
++|++|+++||++||+|+++|+.++|++||++|+|.++++++.||+||||||+||||++||.|+|+|+|++++|+|+|||
T Consensus 243 ~kLk~Qs~~lw~~~d~L~~~~s~~~L~~iL~~N~q~~~g~~~~ll~r~AD~m~FGal~~CP~C~g~l~~~~~~Y~C~G~~ 322 (981)
T PLN03123 243 SKLEAQSKELWSLKDDLKKHVSTAELREMLEANGQDTSGSELDLRDRCADGMMFGALGPCPLCSGPLLYSGGMYRCQGYL 322 (981)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHhCCCCCCCCCCCeeEEcCCceEECccc
Confidence 55999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccccccCCCCCCCCCccCCcccCCcccchhhcccCCCCCCCccccCC------------------CCCCCCCcEEE
Q 037230 135 SEWSTCTFRTKDPPRKQEPTKLPDSVLNSPISDLAKRYQDPSHRPRRDVGA------------------AVKPFTGMTIS 196 (815)
Q Consensus 135 sewtkC~~~~~~p~R~~~~~kiP~~~~~~fl~~~~~~~~~~~~~p~r~~~p------------------~~~~L~g~~~~ 196 (815)
|||++|+|+|++|+|++++|+||+++++.||++|.+ .|+ ...|.|+++| ..+||.|++|+
T Consensus 323 sewtkC~~~t~~P~R~~~~~kip~~~~~~~l~~~~k-~~k-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~ 400 (981)
T PLN03123 323 SEWSKCSYSTLEPERIKKKWKIPDETDNQYLRKWFK-SQK-SKKPERLLPPSSSNESSGKQAQSNSSDSESEFLGDLKVS 400 (981)
T ss_pred CCcCccccccCCCCccCCCccCCHHHHHHHHHHHHH-hcc-CCCcccccCCCCcccccccccccccccccCCCcCCeEEE
Confidence 999999999999999767999999999889999965 465 4667777654 24899999999
Q ss_pred EeeccccchHHHHHHHHHcCCEEEeecc-ceeEEEeChHHHhcCCchhHHHHHHcCCcEechhHHHHHhhhcCCCCCccc
Q 037230 197 LMGRLSRTHQYWRTTIEKHGGKVAASPI-GLTCLVASPAERERGGSSKLVEAMERGTRVVSEAWLIDSIEKQEAQPLEAY 275 (815)
Q Consensus 197 isG~l~~~r~elk~~Ie~~GG~v~~~vs-~~thlI~t~~e~~k~~s~K~~~A~~~gI~IVsed~L~d~~~~~~~l~~~~Y 275 (815)
++|+|+.++.+|++.|+.+||+|+.+|+ .|||||+++ +++++ +.|+++|+++|||||+++||.+|+.++.++|...|
T Consensus 401 i~G~~~~~~~~~k~~Ie~~GG~~s~~v~~~~t~l~tt~-e~~k~-~~kv~qAk~~~ipIVsedwL~ds~~~~~~~p~~~y 478 (981)
T PLN03123 401 IVGASKEKVTEWKAKIEEAGGVFHATVKKDTNCLVVCG-ELDDE-DAEMRKARRMKIPIVREDYLVDCFKKKKKLPFDKY 478 (981)
T ss_pred EecCCCCcHHHHHHHHHhcCCEEeeeccCCceEEEccH-Hhhhc-chHHHHHHhcCCCcccHHHHHHHHhccccCcchhh
Confidence 9999998899999999999999999999 999999886 88888 59999999999999999999999999999998888
Q ss_pred ccccCCCCCCCCCCCCCCCCChHHHHHHHHHHHHhcCccCCCCCccccCCceEEEeCCeEEEEEEeeecCCCCcccEEEE
Q 037230 276 DLVTDLAPDSKGIPWDKMDPSEEAIESIAAELKLYGKRGVYKDTKLQEQGGKILEKDGILYNCAFSLCDQGRGMNLYCIV 355 (815)
Q Consensus 276 ~i~s~~~~~~~~~~~~k~d~~~~~~~s~~~k~k~kg~~~Vd~~s~l~~~~~hVy~d~~~~Y~~~L~~tDi~~~~NkfY~l 355 (815)
.+.+.. .+ +..++++++|+++||++|++.+ ++|||+++|.+|+|||++||+++|+|+||+|
T Consensus 479 ~~~~~~-------~~-----------~~~~~~~~kg~~~Vd~~~~~~~-~~hVyed~g~iY~~~Ln~td~~~n~NkfY~i 539 (981)
T PLN03123 479 KLEASG-------TS-----------SSMVTVKVKGRSAVHEASGLQD-TGHILEDGKSIYNTTLNMSDLSTGVNSYYIL 539 (981)
T ss_pred hhcccc-------cc-----------cccccccccCCccCCccccccc-CceEEecCCeEeeeeEecccccCCCcceEEE
Confidence 776310 00 1245778999999999999997 9999999999999999999999999999999
Q ss_pred EEEEcCC-CCeEEEEEeeccCCCCcccccccCCCCHHHHHHHHHHHHHHHhcCCCccccccccCccCCCCccccccCCcc
Q 037230 356 QLITVPD-SNLHLYYKKGKVGDDPNAEERLEEWTGVDNAIKEFVRLFEEVTGNEFEPWEREKKFQKKPLKFYPIDMDDGV 434 (815)
Q Consensus 356 Qlle~~~-~~y~vf~~wGRVG~~~~g~~k~~~~~s~e~Ai~~F~k~F~eKTgn~w~~w~~r~~f~k~pgKy~~v~~d~~~ 434 (815)
|||+++. +.||||++|||||+..+|++++++| ++++|+.+|+++|++||||+|++|++|.+|+|+||||+||++||+.
T Consensus 540 QLL~~~~~~~y~v~~rWGRVG~~~ig~~~l~~~-~~~~A~~~F~kkF~eKTgn~W~~~~~r~~F~k~pgKy~~ie~dy~~ 618 (981)
T PLN03123 540 QIIEEDKGSDCYVFRKWGRVGNEKIGGNKLEEM-SKSDAIHEFKRLFLEKTGNPWESWEQKTNFQKQPGKFYPLDIDYGV 618 (981)
T ss_pred EEEEeCCCCeEEEEEEecccCCcccCccccCCC-CHHHHHHHHHHHHHHHhcCcccchhhcccccccCCceeEEEeecCc
Confidence 9999987 7899999999999976689999988 6899999999999999999999999999999999999999999987
Q ss_pred ccccCCCCcccccccCCCCCCCHHHHHHHHHHhCHHHHHHHHHHccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhccc
Q 037230 435 EVRHGGLGMRQLGVAAAHSKLDPVVANFMKVLCSQEVYRYALMEMGLDAPDLPIGMLSNVHLNRCEEVLQQFIEAVKSTK 514 (815)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~s~L~~~Vq~Li~~I~d~~~~~~~~~e~~~d~~k~PLGkLS~~qI~~a~~vL~ei~~~l~~~~ 514 (815)
+++.... .....+|+|+++||+||++|||+++|+++|++|+||+.+||||+||++||++||+||.+|+++|++..
T Consensus 619 ~~~~~~~-----~~~~~~skL~~~vq~L~klIfd~~~m~~~m~e~~~D~~kmPLGkLSk~qI~~g~~vL~ei~~~l~~~~ 693 (981)
T PLN03123 619 NEQPKKK-----AASGSKSNLAPRLVELMKMLFDVETYRAAMMEFEINMSEMPLGKLSKANIQKGFEALTEIQNLLKEND 693 (981)
T ss_pred ccchhhh-----cccCCcCCCCHHHHHHHHHHhCHHHHHHHHHHccCCcccCCCccccHHHHHHHHHHHHHHHHHHhccc
Confidence 6543211 12567899999999999999999999999999999999999999999999999999999999998765
Q ss_pred ccchhhHHHHHHhhhhccccccCCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCcchhhhhhcCceeE
Q 037230 515 ETGQKAEAIWTDFSNRWFTLMHSLRPFIFRDNQEIADHAASSFEAVRDITVASHLIGDMSGSTLDDPLSDCYEKLACSIS 594 (815)
Q Consensus 515 ~~~~~~~~~l~~lsn~fYtlIPh~~p~~i~~~~~l~~k~~~lle~L~die~A~~ll~~~~~~~~~~pld~~Y~~L~~~i~ 594 (815)
...+..+..|.+|||+|||+|||++||+|++.++|++|+ +|||+|.||++|++|++.. .+..||||.+|++|+|+|+
T Consensus 694 ~~~~~~~~~l~~lSn~fYtlIPh~~pp~I~~~~~ik~k~-~lLe~L~dieiA~~ll~~~--~~~~~pld~~Y~~L~~~i~ 770 (981)
T PLN03123 694 QDPSIRESLLVDASNRFFTLIPSIHPHIIRDEDDLKSKV-KMLEALQDIEIASRLVGFD--VDEDDSLDDKYKKLHCDIS 770 (981)
T ss_pred ccchhHHHHHHHHhhccEecCCCCCCCcCCCHHHHHHHH-HHHHHHHHHHHHHHHHhcc--CcCCCchHHHHHhcCCeEE
Confidence 443334578999999999999999999999999999999 9999999999999999763 3568999999999999999
Q ss_pred EcCCCCHHHHHHHHHHHhccCCCccCCcccccccceeeeEecCC-ccchhhhh-cCCCceeeeccCCccchhhhcccCCC
Q 037230 595 ALEKDSDDYKMIVNYLEKTYEPVKLGDIEYGVSVDNIFVIESNA-QPSLDEIK-KLPNKVLLWCGTRSSNLLRHLQKGFL 672 (815)
Q Consensus 595 ~L~~~s~ey~~I~~y~~~t~~~~h~~~~~~~~~I~~If~v~r~~-~~~f~~~~-~~~N~~lLwHGSr~~N~~gIL~~Gl~ 672 (815)
||+++|+||++|++|+.+||+++| ..|+++|.+||+|+|.+ .+||.+|. .++||+|||||||.+||+|||++|||
T Consensus 771 ~L~~~s~ey~~I~~Yl~nT~~~th---~~y~l~v~~IF~v~r~gE~~rf~~~~~~~~Nr~LLwHGSr~~N~~gILs~GLr 847 (981)
T PLN03123 771 PLPHDSEDYKLIEKYLLTTHAPTH---TDWSLELEEVFSLEREGEFDKYAPYKEKLKNRMLLWHGSRLTNFVGILSQGLR 847 (981)
T ss_pred ECCCCCHHHHHHHHHHHhcCCCcc---ccccceeeEEEEecccccccchhhHhhcCCCceEEEcCCCcccHHHHhhccCc
Confidence 999999999999999999999999 78999999999999999 89999985 79999999999999999999999999
Q ss_pred CCCCCCCCCCceeeeeeeechhhhhhhcccccCCCCCceEEEEEEEecCCcceeccCCCCcCccCCCCCcceeeeccccC
Q 037230 673 PASCSLPVPGYMFGRAIVCSDAAAEAARYGFTAADRPEGFLVLAVASLGDQVTELKKPPEDTKSLEDKKLGVKGLGRKKT 752 (815)
Q Consensus 673 iap~~a~~tG~mFGkGIYFAd~~skS~~Yc~~~~~~~~~~mlLceVaLG~~~~e~~~~~~~~~~~p~G~~Sv~g~G~~~P 752 (815)
||||+||++|||||+||||||++||||+||+++.++++|+|||||||||+ +++++.+ .++++||+|+|||+|+|++.|
T Consensus 848 iaPpeap~tGymfGkGIYFAD~~SKSanYc~~~~~~~~g~llLceVaLG~-~~e~~~~-~~~~~~p~g~~S~~g~G~~~P 925 (981)
T PLN03123 848 IAPPEAPATGYMFGKGVYFADLVSKSAQYCYTDRKNPVGLMLLSEVALGE-IYELKKA-KYMDKPPRGKHSTKGLGKTVP 925 (981)
T ss_pred cCCccccccCccccceeEecchhhhhhhhhcccCCCCceEEEEEEEecCC-hhhhccc-cccccCCCCceeeeecCCCCC
Confidence 99999999999999999999999999999999999999999999999999 8999998 789999999999999999999
Q ss_pred CCCCceeecCCeEecCCCcccCCCCCCCCCCceEEEecCCCcceeeEEEEEecccc
Q 037230 753 DESEHFFWNDDIKVPGGRLIPSEHKNSPLEYNEYAVYDPKQTSIRFLVGVKFEERG 808 (815)
Q Consensus 753 dp~~~~~~~dgv~vP~G~~~~~~~~~~~l~ynEyIVYd~~Qv~~rYLv~~~~~~~~ 808 (815)
||+++++|+|||.||+|+++++...+++|.||||||||++||||||||+|+|+|+.
T Consensus 926 d~~~~~~~~dgv~vP~Gk~~~~~~~~~~L~yNEYIVYd~~Qvr~rYLv~vkf~~~~ 981 (981)
T PLN03123 926 QESEFVKWRDDVVVPCGKPVPSKVKASELMYNEYIVYNTAQVKLQFLLKVRFKHKR 981 (981)
T ss_pred CcccceecCCceEeeCCCCccCcccCCccccCceEEechhHEEEEEEEEEEeeccC
Confidence 99999999999999999999988888999999999999999999999999999874
No 3
>PLN03124 poly [ADP-ribose] polymerase; Provisional
Probab=100.00 E-value=4.9e-131 Score=1132.09 Aligned_cols=489 Identities=28% Similarity=0.502 Sum_probs=450.3
Q ss_pred HHHHHHHHhcCccCCCCCc--cccCCceEEEeCCeEEEEEEeeecCCCCcccEEEEEEEEcCC-CCeEEEEEeeccCCCC
Q 037230 302 SIAAELKLYGKRGVYKDTK--LQEQGGKILEKDGILYNCAFSLCDQGRGMNLYCIVQLITVPD-SNLHLYYKKGKVGDDP 378 (815)
Q Consensus 302 s~~~k~k~kg~~~Vd~~s~--l~~~~~hVy~d~~~~Y~~~L~~tDi~~~~NkfY~lQlle~~~-~~y~vf~~wGRVG~~~ 378 (815)
+..++++++|+++||+.+. +.+ +||||+++|.+|+|||++||+++|+|+||+||||+++. +.|+||++|||||+.
T Consensus 142 ~~~~~~~~k~~~~vD~~~~~~~~~-~~hVyed~g~iYda~Lnqtdi~~n~NkFY~iQlLe~d~~~~Y~v~~rWGRVG~~- 219 (643)
T PLN03124 142 EKIVTATKKGRAVLDQWLPDHIKS-NYHVLEEGDDVYDAMLNQTNVGDNNNKFYVLQVLESDDGSKYMVYTRWGRVGVK- 219 (643)
T ss_pred ccceeeeeecccccCCCCCccccC-ceEEEecCCeEEEEEEEccccCCCCcceEEEEEEEeCCCCeEEEEEEeCccCCc-
Confidence 4467788999999996544 444 89999999999999999999999999999999999988 789999999999997
Q ss_pred ccccccc-CCCCHHHHHHHHHHHHHHHhcCCCccccccccCccCCCCccccccCCcccccc-CCCCcccccccCCCCCCC
Q 037230 379 NAEERLE-EWTGVDNAIKEFVRLFEEVTGNEFEPWEREKKFQKKPLKFYPIDMDDGVEVRH-GGLGMRQLGVAAAHSKLD 456 (815)
Q Consensus 379 ~g~~k~~-~~~s~e~Ai~~F~k~F~eKTgn~w~~w~~r~~f~k~pgKy~~v~~d~~~~~~~-~~~~~~~~~~~~~~s~L~ 456 (815)
|++++. +|+++++|+.+|+++|++||||+ |++|.+|+++||||+||++||+.+++. ......+......+|+|+
T Consensus 220 -Gq~~l~~~~~sle~Ai~~F~kkF~eKTGN~---W~~R~~F~k~pgKY~~ie~dy~~~~~~~~~~~~~~~~~~~~~skL~ 295 (643)
T PLN03124 220 -GQDKLHGPYDSREPAIREFEKKFYDKTKNH---WSDRKNFISHPKKYTWLEMDYEDEEESKKDKPSVSSEDKNKQSKLD 295 (643)
T ss_pred -CcccccCCCCCHHHHHHHHHHHHHHHhCCc---hhhcccccccCCceeEEEeecccccchhhhccchhccccCCCCCCC
Confidence 688887 58999999999999999999996 588999999999999999999876542 111111122355679999
Q ss_pred HHHHHHHHHHhCHHHHHHHHHHccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhcccccc
Q 037230 457 PVVANFMKVLCSQEVYRYALMEMGLDAPDLPIGMLSNVHLNRCEEVLQQFIEAVKSTKETGQKAEAIWTDFSNRWFTLMH 536 (815)
Q Consensus 457 ~~Vq~Li~~I~d~~~~~~~~~e~~~d~~k~PLGkLS~~qI~~a~~vL~ei~~~l~~~~~~~~~~~~~l~~lsn~fYtlIP 536 (815)
++||+||++|||+++|+++|++|+||+.+||||+||+.||.+||+||.+|+++|.... ...|.+|||+|||+||
T Consensus 296 ~~Vq~Li~lIfd~~~m~~~m~e~~~D~~KmPLGkLSk~qI~kgy~vL~ei~~~l~~~~------~~~l~~lSn~FYTlIP 369 (643)
T PLN03124 296 PRVAQFISLICDVSMMKQQMMEIGYNARKLPLGKLSKSTILKGYEVLKRIAEVISRSD------RETLEELSGEFYTVIP 369 (643)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHcCCCcccCCCcccCHHHHHHHHHHHHHHHHHHcccc------hHHHHHHhcCeEEecC
Confidence 9999999999999999999999999999999999999999999999999999997542 3579999999999999
Q ss_pred CC------CCccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCcchhhhhhcCceeEEcCCCCHHHHHHHHHH
Q 037230 537 SL------RPFIFRDNQEIADHAASSFEAVRDITVASHLIGDMSGSTLDDPLSDCYEKLACSISALEKDSDDYKMIVNYL 610 (815)
Q Consensus 537 h~------~p~~i~~~~~l~~k~~~lle~L~die~A~~ll~~~~~~~~~~pld~~Y~~L~~~i~~L~~~s~ey~~I~~y~ 610 (815)
|+ +||+|+|.++|++|+ +|||+|.|||+|++|++.. ..+..||+|.+|++|+|+|+||+++|+||++|++|+
T Consensus 370 H~FG~~~~~~~vIdt~~~lk~k~-elLe~L~DIevA~~ll~~~-~~~~~~pld~~Y~~L~c~i~pLd~~S~efk~I~~Yl 447 (643)
T PLN03124 370 HDFGFKKMRQFTIDTPQKLKHKL-EMVEALGEIEIATKLLKDD-IGEQDDPLYAHYKRLNCELEPLDTDSEEFSMIAKYL 447 (643)
T ss_pred cccccCCCCccccCCHHHHHHHH-HHHHHHHHHHHHHHHHhhc-cCCCCCcHHHHHHHcCCeeEEcCCCCHHHHHHHHHH
Confidence 98 457999999999999 9999999999999999763 345689999999999999999999999999999999
Q ss_pred HhccCCCccCCcccccccceeeeEecCC-ccchhhhhcCCCceeeeccCCccchhhhcccCCCCCCCCCCCCCceeeeee
Q 037230 611 EKTYEPVKLGDIEYGVSVDNIFVIESNA-QPSLDEIKKLPNKVLLWCGTRSSNLLRHLQKGFLPASCSLPVPGYMFGRAI 689 (815)
Q Consensus 611 ~~t~~~~h~~~~~~~~~I~~If~v~r~~-~~~f~~~~~~~N~~lLwHGSr~~N~~gIL~~Gl~iap~~a~~tG~mFGkGI 689 (815)
.+||+++| ..|+++|.+||+|+|.+ .++|++|++++|++|||||||.+||+|||++||+|+||+||++|||||+||
T Consensus 448 ~nT~~~th---~~y~l~V~~If~V~R~~E~~rF~~~~~~~Nr~LLWHGSr~~N~~gILs~GLriaPpea~~~GymfGkGI 524 (643)
T PLN03124 448 ENTHGQTH---SGYTLEIVQIFKVSREGEDERFQKFSSTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPSTGYMFGKGV 524 (643)
T ss_pred HhcCCCcc---CcCceeEEEEEEeccccchhhHHHhhccCCeEEEEcCCCcccHHHHHhccCccCCccccccccccccee
Confidence 99999999 78999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred eechhhhhhhcccccCCCCCceEEEEEEEecCCcceeccCCCCcCccCCCCCcceeeeccccCCCCCceeecCCeEecCC
Q 037230 690 VCSDAAAEAARYGFTAADRPEGFLVLAVASLGDQVTELKKPPEDTKSLEDKKLGVKGLGRKKTDESEHFFWNDDIKVPGG 769 (815)
Q Consensus 690 YFAd~~skS~~Yc~~~~~~~~~~mlLceVaLG~~~~e~~~~~~~~~~~p~G~~Sv~g~G~~~Pdp~~~~~~~dgv~vP~G 769 (815)
||||++|||++||+++.+++.++|||||||||+ ++++.+++..++++|+|+|||+|+|++.|||+++++++|||.||+|
T Consensus 525 YFAd~~skSa~Yc~~~~~~~~g~llLceVaLG~-~~el~~~~y~a~~~p~G~~S~kG~G~~~Pdp~~~~~~~dGV~VP~G 603 (643)
T PLN03124 525 YFADMFSKSANYCYASAANPDGVLLLCEVALGD-MNELLQADYNANKLPPGKLSTKGVGRTVPDPSEAKTLEDGVVVPLG 603 (643)
T ss_pred EecchhhhhhhhhhccCCCCeeEEEEEEEecCC-cchhccCccccccCCCCceeEEeccCCCCCcccceecCCCeEeeCC
Confidence 999999999999999888999999999999999 9999999555589999999999999999999999999999999999
Q ss_pred CcccCCCCCCCCCCceEEEecCCCcceeeEEEEEecccc
Q 037230 770 RLIPSEHKNSPLEYNEYAVYDPKQTSIRFLVGVKFEERG 808 (815)
Q Consensus 770 ~~~~~~~~~~~l~ynEyIVYd~~Qv~~rYLv~~~~~~~~ 808 (815)
+++++...+++|.||||||||++||||||||+|+|+|+.
T Consensus 604 k~~~~~~~~~~L~yNEYIVYd~~Qvr~rYLv~vkf~~~~ 642 (643)
T PLN03124 604 KPVESPYSKGSLEYNEYIVYNVDQIRMRYVLQVKFNYKR 642 (643)
T ss_pred ccccCCCCCCccccCceEEechhHeEEEEEEEEEEeecC
Confidence 999987778999999999999999999999999999974
No 4
>cd01437 parp_like Poly(ADP-ribose) polymerase (parp) catalytic domain catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The carboxyl-terminal region is the most highly conserved region of the protein. Experiments have shown that a carboxyl 40 kDa fragment is still catalytically active. Poly(ADP-ribose)-like polymerases (PARPS 1-3, VPARP, tankyrase) catalyze the addition of up to 100 ADP_ribose units from NAD+. PARPs 1 and 2 are localized in the nucleaus, bind DNA, and are activated by DNA damage. VPARP is part of the vault ribonucleoprotein complex. Tankyrases regulates telomere length through interactions with telomere repeat binding factor 1.
Probab=100.00 E-value=3.3e-93 Score=778.71 Aligned_cols=341 Identities=38% Similarity=0.624 Sum_probs=323.3
Q ss_pred CCCCCHHHHHHHHHHhCHHHHHHHHHHccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhc
Q 037230 452 HSKLDPVVANFMKVLCSQEVYRYALMEMGLDAPDLPIGMLSNVHLNRCEEVLQQFIEAVKSTKETGQKAEAIWTDFSNRW 531 (815)
Q Consensus 452 ~s~L~~~Vq~Li~~I~d~~~~~~~~~e~~~d~~k~PLGkLS~~qI~~a~~vL~ei~~~l~~~~~~~~~~~~~l~~lsn~f 531 (815)
+|+|+++||+||++|||+++|+.+|++|++|+.+||||+||++||++||+||.+|+++|++... ....+.+|||+|
T Consensus 1 ~skL~~~vq~l~~~I~d~~~~~~~m~e~~~D~~kmPLGkLSk~qI~~g~~vL~~i~~~l~~~~~----~~~~l~~ls~~F 76 (347)
T cd01437 1 KSKLDKPVQELIKLIFDVEMMKKAMTELKIDASKMPLGKLSKNQIQKGYEVLKEIEEALKRGSS----QGSQLEELSNEF 76 (347)
T ss_pred CCCcCHHHHHHHHHHcCHHHHHHHHHHcCCCcccCCCcccCHHHHHHHHHHHHHHHHHHhcccc----chHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999999999999999987653 146799999999
Q ss_pred cccccCC----CCccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCcchhhhhhcCceeEEcCCCCHHHHHHH
Q 037230 532 FTLMHSL----RPFIFRDNQEIADHAASSFEAVRDITVASHLIGDMSGSTLDDPLSDCYEKLACSISALEKDSDDYKMIV 607 (815)
Q Consensus 532 YtlIPh~----~p~~i~~~~~l~~k~~~lle~L~die~A~~ll~~~~~~~~~~pld~~Y~~L~~~i~~L~~~s~ey~~I~ 607 (815)
||+|||+ +||+|+|.+.|++|+ +|||+|.||++|++|++.. .....||+|.+|++|+|+|+||+++|+||++|+
T Consensus 77 YtlIPh~fg~~~p~~i~~~~~l~~k~-~lle~L~die~a~~l~~~~-~~~~~~pld~~Y~~L~~~i~~L~~~s~ey~~I~ 154 (347)
T cd01437 77 YTLIPHDFGMSKPPVIDNEELLKAKR-ELLEALRDIEIASKLLKDD-EDDSDDPLDANYEKLKCKIEPLDKDSEEYKIIE 154 (347)
T ss_pred HHhCCccccCCCCCccCCHHHHHHHH-HHHHHHHHHHHHHHHHhhc-ccCCCCcchhHHHHcCeeEEECCCCChHHHHHH
Confidence 9999999 899999999999999 9999999999999999764 246789999999999999999999999999999
Q ss_pred HHHHhccCCCccCCcccccccceeeeEecCC-ccchhhhhcCCCceeeeccCCccchhhhcccCCCCCCCCCCCCCceee
Q 037230 608 NYLEKTYEPVKLGDIEYGVSVDNIFVIESNA-QPSLDEIKKLPNKVLLWCGTRSSNLLRHLQKGFLPASCSLPVPGYMFG 686 (815)
Q Consensus 608 ~y~~~t~~~~h~~~~~~~~~I~~If~v~r~~-~~~f~~~~~~~N~~lLwHGSr~~N~~gIL~~Gl~iap~~a~~tG~mFG 686 (815)
+||.+|++++| .|+++|.+||+|+|.+ +++|+++++.+|++|||||||.+||++||++||+++|++++.+|||||
T Consensus 155 ~y~~~t~~~~~----~~~~~V~~If~i~r~~e~~~F~~~~~~~n~~lLwHGsr~~n~~~Il~~Gl~~~~~~~~~~g~mfG 230 (347)
T cd01437 155 KYLKNTHAPTT----EYTVEVQEIFRVEREGETDRFKPFKKLGNRKLLWHGSRLTNFVGILSQGLRIAPPEAPVTGYMFG 230 (347)
T ss_pred HHHHhcCCCCC----CcceeEEEEEEecCCCchhhhHHhhccCCeEEEEcCCChhhHHHHHhcCCCcCccccccCCcccc
Confidence 99999999886 6899999999999999 999998889999999999999999999999999999999999999999
Q ss_pred eeeeechhhhhhhcccccCCCCCceEEEEEEEecCCcceeccCCCCcCccCCCCCcceeeeccccCCCCCceeecCCeEe
Q 037230 687 RAIVCSDAAAEAARYGFTAADRPEGFLVLAVASLGDQVTELKKPPEDTKSLEDKKLGVKGLGRKKTDESEHFFWNDDIKV 766 (815)
Q Consensus 687 kGIYFAd~~skS~~Yc~~~~~~~~~~mlLceVaLG~~~~e~~~~~~~~~~~p~G~~Sv~g~G~~~Pdp~~~~~~~dgv~v 766 (815)
+||||||++|||++||+++.+++.++||||+||||+ ++++..++...++||+|+|||+|+|++.|||++++++.|||.|
T Consensus 231 kGIYFAd~~skS~~Y~~~~~~~~~~~mlLc~V~lG~-~~~~~~~~~~~~~~p~g~~Sv~g~G~~~p~~~~~~~~~~gv~v 309 (347)
T cd01437 231 KGIYFADMFSKSANYCHASASDPTGLLLLCEVALGK-MNELKKADYMAKELPKGKHSVKGLGKTAPDPSEFEIDLDGVVV 309 (347)
T ss_pred ceEeecCchHhhhhhcccCCCCCceEEEEEEEecCc-eehhccCChhhccCCCCceeeEeccCCCCCchhheeccCCeEe
Confidence 999999999999999999888899999999999999 8999999666667999999999999999999999999999999
Q ss_pred cCCCcccCCCC-CCCCCCceEEEecCCCcceeeEEEEE
Q 037230 767 PGGRLIPSEHK-NSPLEYNEYAVYDPKQTSIRFLVGVK 803 (815)
Q Consensus 767 P~G~~~~~~~~-~~~l~ynEyIVYd~~Qv~~rYLv~~~ 803 (815)
|+|+++++... +++|.||||||||++||||||||+|+
T Consensus 310 P~G~~~~~~~~~~~~l~~nEyiVYd~~Qir~rYLv~vk 347 (347)
T cd01437 310 PLGKPVPSGHKTDTSLLYNEYIVYDVAQVRLKYLLEVK 347 (347)
T ss_pred eCCccccCCcCCCcccccCCeEeechhHEEEEEEEEeC
Confidence 99999987766 78999999999999999999999985
No 5
>KOG1037 consensus NAD+ ADP-ribosyltransferase Parp, required for poly-ADP ribosylation of nuclear proteins [Transcription; Replication, recombination and repair; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-65 Score=583.22 Aligned_cols=465 Identities=29% Similarity=0.378 Sum_probs=397.5
Q ss_pred CceEEEeCCeEEEEEEeeecCCCCcccEEEEEEEEcCC-CCeEEEEEeeccCCCCcccccccCC-CCHHHHHHHHHHHHH
Q 037230 325 GGKILEKDGILYNCAFSLCDQGRGMNLYCIVQLITVPD-SNLHLYYKKGKVGDDPNAEERLEEW-TGVDNAIKEFVRLFE 402 (815)
Q Consensus 325 ~~hVy~d~~~~Y~~~L~~tDi~~~~NkfY~lQlle~~~-~~y~vf~~wGRVG~~~~g~~k~~~~-~s~e~Ai~~F~k~F~ 402 (815)
..+.+..+..+|...|+.+.+..++|++|.+|+++.+. -.+..|.+||||+.. |++.+... .+...|...|...|.
T Consensus 59 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~d~~~~~~~~~~~~~v~~~--~~s~~~~~~~~~~~~~~~~~~~~~ 136 (531)
T KOG1037|consen 59 KKDHLIRGPEVKVPGLNQTNVENENNKEYTEEELEWDEQQKKRKTVEEGGVTGK--GQSGIVKKSKSLDKAKKPFEIKSY 136 (531)
T ss_pred Ccccccccccccccccccccccccccchhhhhhhhcccccceeeeeeecccccc--cccccchhhhhhhhccchhhhhcc
Confidence 34445556788999999888899999999999999888 578999999999976 57777555 668889999999999
Q ss_pred HHhcCCCccccccccCccCCCCccccccCCccccccCCCCcccccccCCCCCCCHHHHHHHHHHhCHHHHHHHHHHccCC
Q 037230 403 EVTGNEFEPWEREKKFQKKPLKFYPIDMDDGVEVRHGGLGMRQLGVAAAHSKLDPVVANFMKVLCSQEVYRYALMEMGLD 482 (815)
Q Consensus 403 eKTgn~w~~w~~r~~f~k~pgKy~~v~~d~~~~~~~~~~~~~~~~~~~~~s~L~~~Vq~Li~~I~d~~~~~~~~~e~~~d 482 (815)
.+|.+. |+.|..|...+++|-+.+........ .-... +......|+..|++|++.||++++|..+|++|.+|
T Consensus 137 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~ld~~~~~~~~~i~~~~~m~~~~~~~~~~ 208 (531)
T KOG1037|consen 137 KLTKNG---METRDEFIPLGHSYEEEDKKNFSKCR-SCFSP----IKTDSGRLDMSVKELIKNIFDVEEMIKALMEMQLD 208 (531)
T ss_pred hhhhhh---hhhhhhhhcccchhHHHhhhhhcccc-cccCh----hhcccccccccccccccccccHHHHHHHHHhhccc
Confidence 999995 57788888888888332221111000 00000 01122238999999999999999999999999999
Q ss_pred CC-CCCCCCCCHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhccccccCCCCccCCCHHHHHHHHHHHHHHHH
Q 037230 483 AP-DLPIGMLSNVHLNRCEEVLQQFIEAVKSTKETGQKAEAIWTDFSNRWFTLMHSLRPFIFRDNQEIADHAASSFEAVR 561 (815)
Q Consensus 483 ~~-k~PLGkLS~~qI~~a~~vL~ei~~~l~~~~~~~~~~~~~l~~lsn~fYtlIPh~~p~~i~~~~~l~~k~~~lle~L~ 561 (815)
.. +||+|++|+.||.++|++|..+.+.+...... +.+.+++++||++|||+........ .+. ++|++|+
T Consensus 209 ~~l~~p~g~~s~~~i~~~~~~~~~~k~~~~~~~~~-----~~l~~~~~~f~~~ip~~~~~~~~~~----~~~-~~le~~~ 278 (531)
T KOG1037|consen 209 HKLKKPLGKLSLNDINKAYELLLKVKEALKLGKIG-----EQLAKASTEFYTLIPHDFGMRKPPN----EKQ-EALEALL 278 (531)
T ss_pred hhhhCCCCccchhhhhhhhhhhhhhhcccccCCcH-----HHHHHHhhhhhhhcCCCCCcCCCch----hhH-HHHHHhh
Confidence 99 99999999999999999999999999876532 3499999999999999921111111 667 9999999
Q ss_pred HHHHHHHhhhcccCCCC-CCcchhhhhhcCceeEEcCCCCHHHHHHHHHHHhccCCCccCCcccccccceeeeEecCC-c
Q 037230 562 DITVASHLIGDMSGSTL-DDPLSDCYEKLACSISALEKDSDDYKMIVNYLEKTYEPVKLGDIEYGVSVDNIFVIESNA-Q 639 (815)
Q Consensus 562 die~A~~ll~~~~~~~~-~~pld~~Y~~L~~~i~~L~~~s~ey~~I~~y~~~t~~~~h~~~~~~~~~I~~If~v~r~~-~ 639 (815)
+|++|+.+......... .+|++.+|+.|+|.+.+++.+++||++|.+|+.+|+.++| ..+.+++.+|+++.+.+ .
T Consensus 279 ~i~~a~~~~~~~~~~~~~~~Pl~~~y~~l~c~~~~~~~~~~e~kmi~~~~~~~~~~~~---~~~~~~~~~l~k~~~~~e~ 355 (531)
T KOG1037|consen 279 DIELAYGLRKGDDVDATCDDPLDKHYKDLKCKIEKLDKDSEEFKMIAQYVEKTHAKTS---TVKVVQIADLKKVNEKNEA 355 (531)
T ss_pred hhhhhhhhhhccccccCCCChhhhHHHhhhhhhccccccchhHHHHHHHHHhhccccC---ccCceeehhHHHhhhcccc
Confidence 99999999865444445 7899999999999999999999999999999999999988 67778899999999999 8
Q ss_pred cchhhhhcCCCceeeeccCCccchhhhcccCCCCCCCCCCCCCceeeeeeeechhhhhhhcccccCCCCCceEEEEEEEe
Q 037230 640 PSLDEIKKLPNKVLLWCGTRSSNLLRHLQKGFLPASCSLPVPGYMFGRAIVCSDAAAEAARYGFTAADRPEGFLVLAVAS 719 (815)
Q Consensus 640 ~~f~~~~~~~N~~lLwHGSr~~N~~gIL~~Gl~iap~~a~~tG~mFGkGIYFAd~~skS~~Yc~~~~~~~~~~mlLceVa 719 (815)
.+|.....++|++||||||+..|+++||+.|++++|+++|++|||||+||||||++++|++||++....+.++||+|+||
T Consensus 356 ~~~~~~~~~~~r~llw~gs~~~n~a~~l~~g~~~~~~~~~~~g~~~gkgiyfa~~~sks~~y~~~~~~k~~~~ll~~~~a 435 (531)
T KOG1037|consen 356 DRKVDISELINRQLLWHGSRFGNLAGILSPGLRLAPSEAPVTGYMFGKGIYFADAASKSANYCVTMKGKPTGHLLLCDVA 435 (531)
T ss_pred cccccCcccccccchhcccceeeeeccccCCceecCCCCCceeeccccceEeeeecccccccccccccCchhhhhhhhhh
Confidence 89988889999999999999999999999999999999999999999999999999999999999888899999999999
Q ss_pred cCCcceeccCCCCcCccCCCCCcceeeeccccCCCCCceeecCCeEecCCCcccCCC--CCCCCCCceEEEecCCCccee
Q 037230 720 LGDQVTELKKPPEDTKSLEDKKLGVKGLGRKKTDESEHFFWNDDIKVPGGRLIPSEH--KNSPLEYNEYAVYDPKQTSIR 797 (815)
Q Consensus 720 LG~~~~e~~~~~~~~~~~p~G~~Sv~g~G~~~Pdp~~~~~~~dgv~vP~G~~~~~~~--~~~~l~ynEyIVYd~~Qv~~r 797 (815)
||+ +..+..+....+.+|.|+|||+|+|+++|+++....++|++.+|+|.+..+.. .+..+.||||+||+++|++++
T Consensus 436 lg~-~~~~~~~~~~~~~~~~~~~sv~~~g~~~p~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~l~y~e~~v~~~~q~~~~ 514 (531)
T KOG1037|consen 436 LGK-EQDLVESIPSLTELPAGKDSVKGVGKTAPDSTLSEDLEDDVDVPLGKIKLTEEPHKDSLLEYNEYIVYNVEQVQIR 514 (531)
T ss_pred ccc-hhhhhcCCcccccCCCCCcchhhhcccCCCchhhcccccccccccccccccccccchhhhhhhhhhhccHhhhcee
Confidence 999 78887776677779999999999999999999999999999999998775443 556788999999999999999
Q ss_pred eEEEEEeccccccccC
Q 037230 798 FLVGVKFEERGVEMEP 813 (815)
Q Consensus 798 YLv~~~~~~~~~~~~~ 813 (815)
||++++++|..++|..
T Consensus 515 ~~~kv~~~~~~~~~~~ 530 (531)
T KOG1037|consen 515 YLVKVKMDYSTAEMEV 530 (531)
T ss_pred eeeEeehhhhcchhcc
Confidence 9999999999887754
No 6
>PF00644 PARP: Poly(ADP-ribose) polymerase catalytic domain; InterPro: IPR012317 Poly(ADP-ribose) polymerases (PARP) are a family of enzymes present in eukaryotes, which catalyze the poly(ADP-ribosyl)ation of a limited number of proteins involved in chromatin architecture, DNA repair, or in DNA metabolism, including PARP itself. PARP, also known as poly(ADP-ribose) synthetase and poly(ADP-ribose) transferase, transfers the ADP-ribose moiety from its substrate, nicotinamide adenine dinucleotide (NAD), to carboxylate groups of aspartic and glutamic residues. Whereas some PARPs might function in genome protection, others appear to play different roles in the cell, including telomere replication and cellular transport. PARP-1 is a multifunctional enzyme. The polypeptide has a highly conserved modular organisation consisting of an N-terminal DNA-binding domain, a central regulating segment, and a C-terminal or F region accommodating the catalytic centre. The F region is composed of two parts: a purely alpha-helical N- terminal domain (alpha-hd), and the mixed alpha/beta C-terminal catalytic domain bearing the putative NAD binding site. Although proteins of the PARP family are related through their PARP catalytic domain, they do not resemble each other outside of that region, but rather, they contain unique domains that distinguish them from each other and hint at their discrete functions. Domains with which the PARP catalytic domain is found associated include zinc fingers, SAP, ankyrin, BRCT, Macro, SAM, WWE and UIM domains [, , ]. The alpha-hd domain is about 130 amino acids in length and consists of an up-up-down-up-down-down motif of helices. It is thought to relay the activation signal issued on binding to damaged DNA [, ]. The PARP catalytic domain is about 230 residues in length. Its core consists of a five-stranded antiparallel beta-sheet and four-stranded mixed beta-sheet. The two sheets are consecutive and are connected via a single pair of hydrogen bonds between two strands that run at an angle of 90 degrees. These central beta-sheets are surrounded by five alpha-helices, three 3(10)-helices, and by a three- and a two-stranded beta-sheet in a 37-residue excursion between two central beta-strands [, ]. The active site, known as the 'PARP signature' is formed by a block of 50 amino acids that is strictly conserved among the vertebrates and highly conserved among all species. The 'PARP signature' is characteristic of all PARP protein family members. It is formed by a segment of conserved amino acid residues formed by a beta-sheet, an alpha-helix, a 3(10)-helix, a beta-sheet, and an alpha-helix [].; GO: 0003950 NAD+ ADP-ribosyltransferase activity; PDB: 2PQF_F 4F0D_A 1PAX_A 1EFY_A 1A26_A 2PAW_A 4PAX_A 3PAX_A 2PAX_A 3P0N_A ....
Probab=100.00 E-value=3.2e-45 Score=377.15 Aligned_cols=205 Identities=35% Similarity=0.523 Sum_probs=187.1
Q ss_pred cCceeEEcCCCCHHHHHHHHHHHhccCCCccCCcccccccceeeeEecCC-ccchhhhhcCCCceeeeccCCccchhhhc
Q 037230 589 LACSISALEKDSDDYKMIVNYLEKTYEPVKLGDIEYGVSVDNIFVIESNA-QPSLDEIKKLPNKVLLWCGTRSSNLLRHL 667 (815)
Q Consensus 589 L~~~i~~L~~~s~ey~~I~~y~~~t~~~~h~~~~~~~~~I~~If~v~r~~-~~~f~~~~~~~N~~lLwHGSr~~N~~gIL 667 (815)
|+|+|++|+++|+||++|+++|.+|+.+.| .+.++|.+||+|++.. +++|..+++.+|+++|||||+.+|+.+||
T Consensus 1 L~~~l~~l~~~s~ey~~I~~~f~~~~~~~~----~~~~~I~~I~~i~~~~~~~~f~~~~~~~n~~~L~HGt~~~~~~~I~ 76 (206)
T PF00644_consen 1 LNCELVPLEPDSEEYKEIEKYFKKTWKPVH----KYKPKIKKIFRIQNPSLWERFEEKKKEGNERLLFHGTSAENICSIL 76 (206)
T ss_dssp TTEEEEEEETTSHHHHHHHHHHHHTSTSTT----TEEEEEEEEEEEEEHHHHHHHHHHHHSSSEEEEEEEETGGGHHHHH
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHhHCCCCC----CCCCEEEEEEEEcChhHHHHHHHHHhcCCceEEeCCCChhhccchh
Confidence 799999999999999999999999998765 3689999999999999 99999887889999999999999999999
Q ss_pred ccCCCCCCCCCCCCCceeeeeeeechhhhhhhcccccCCCCCceEEEEEEEecCCcceeccCCCCcCccCCCCCcceeee
Q 037230 668 QKGFLPASCSLPVPGYMFGRAIVCSDAAAEAARYGFTAADRPEGFLVLAVASLGDQVTELKKPPEDTKSLEDKKLGVKGL 747 (815)
Q Consensus 668 ~~Gl~iap~~a~~tG~mFGkGIYFAd~~skS~~Yc~~~~~~~~~~mlLceVaLG~~~~e~~~~~~~~~~~p~G~~Sv~g~ 747 (815)
++||+++++.++.+|+|||+|||||+++++|+.||.+...++.++||||+||||+ +++++..+. +..+|.|+|||+|.
T Consensus 77 ~~G~~~~~~~~~~~g~~fG~GiYfs~~~s~s~~Y~~~~~~~g~~~~llc~V~lG~-~~~~~~~~~-~~~~~~g~~sv~~~ 154 (206)
T PF00644_consen 77 RNGFKIDPRKASRNGGMFGKGIYFSDNSSKSAQYSKPSDSNGERFMLLCRVALGK-PYELKNDNP-MTSPPPGYDSVKGV 154 (206)
T ss_dssp HHSS---TTTSCGGCSTTSSSEEEBSSHHHHHTTSTSESSSSEEEEEEEEEEECS-EEEESSCCT-GSSGCTTESEEEEC
T ss_pred cCCCccCccccccCCceeeeEEEeCcchhhhcccCCCccCCcceeeeEEEEEecc-ceeeccCcc-cccccCCcceecCC
Confidence 9999998888889999999999999999999999998666889999999999999 899999866 99999999999999
Q ss_pred ccccCCCCCceeecCCeEecCCCcccCCCCCCCCCCceEEEecCCCcceeeEEEEEe
Q 037230 748 GRKKTDESEHFFWNDDIKVPGGRLIPSEHKNSPLEYNEYAVYDPKQTSIRFLVGVKF 804 (815)
Q Consensus 748 G~~~Pdp~~~~~~~dgv~vP~G~~~~~~~~~~~l~ynEyIVYd~~Qv~~rYLv~~~~ 804 (815)
|+..| ....+.+| +|+|++......+..+.+|||||||++|++|+|||+|+|
T Consensus 155 ~~~~~---~~~~~~~g--~p~~~~~~~~~~~~~~~~~eyVVy~~~q~~p~YLi~y~~ 206 (206)
T PF00644_consen 155 GSKTP---EDTIDEDG--VPSGKGYVSEYDGSSLNPNEYVVYDNSQVYPEYLITYKF 206 (206)
T ss_dssp ESEEE---GGEEEETT--ETTSSEEESCEESSSSSCSEEEESSGGGEEEEEEEEEEE
T ss_pred CccCC---ccccccCC--CCCCCCccCccCCCccCCCEEEEEcccceeeEEEEEEEC
Confidence 99888 45677888 999988766666677999999999999999999999987
No 7
>cd01438 tankyrase_like Tankyrases interact with the telomere reverse transcriptase complex (TERT). Tankyrase 1 poly-ADP-ribosylates Telomere Repeat Binding Factor 1 (TRF1) while Tankyrase 2 can poly-ADP-ribosylate itself or TRF1. The tankyrases also contain multiple ankyrin repeats that mediate protein-protein interaction (binding TRF1 and insulin-responsive aminopeptidase) and may function as a complex. Overexpression of Tank1 promotes increased telomere length when overexpressed, while overexpressed Tank2 has been shown to promote PARP cleavage- independent cell death (necrosis).
Probab=100.00 E-value=6.5e-36 Score=305.78 Aligned_cols=182 Identities=17% Similarity=0.246 Sum_probs=149.4
Q ss_pred hcCceeEEcCCCCHHHHHHHHHHHhccCCCccCC----cccccccceeeeEecCC-ccchhhh--------hcCCCceee
Q 037230 588 KLACSISALEKDSDDYKMIVNYLEKTYEPVKLGD----IEYGVSVDNIFVIESNA-QPSLDEI--------KKLPNKVLL 654 (815)
Q Consensus 588 ~L~~~i~~L~~~s~ey~~I~~y~~~t~~~~h~~~----~~~~~~I~~If~v~r~~-~~~f~~~--------~~~~N~~lL 654 (815)
+.++.+..|.+++.||+.|++.|+.|..+.+.+. .--+++|..|-||++.. |++|... .+..|+++|
T Consensus 13 ~~~~~~~~l~p~~~e~~~v~~~~~~t~~~~~~~~~~~~~~~~~~I~kI~RIQN~~Lw~~y~~kk~~~~~~~~~~~ne~~L 92 (223)
T cd01438 13 NQGTILLDLAPDDKEYQSVEEEMQSTIREHRDGGNAGGIFNRYNIIRIQKVVNKKLRERYCHRQKEIAEENHNHHNERML 92 (223)
T ss_pred CccceEEEecCCCchHHHHHHHHHhhccccccCcccccccccccEEEEEecCCHHHHHHHHHHHHHHHHhhCCCcceEEE
Confidence 5678899999999999999999999987543111 11256899999999999 9999843 235899999
Q ss_pred eccCCccchhhhcccCCCCCCCCCCCCCceeeeeeeechhhhhhhcccccCCC------CC-------ceEEEEEEEecC
Q 037230 655 WCGTRSSNLLRHLQKGFLPASCSLPVPGYMFGRAIVCSDAAAEAARYGFTAAD------RP-------EGFLVLAVASLG 721 (815)
Q Consensus 655 wHGSr~~N~~gIL~~Gl~iap~~a~~tG~mFGkGIYFAd~~skS~~Yc~~~~~------~~-------~~~mlLceVaLG 721 (815)
||||+..| +|+++||+.+.+ .+|+|||+|||||+++|||++||++... .+ .++||||+|+||
T Consensus 93 fHGt~~~~--~I~~~GFd~r~~---~~g~~fGkGiYFA~~askS~~Y~~~~~~~~~~p~~~~~~~~~~~~~MfLcrVlLG 167 (223)
T cd01438 93 FHGSPFIN--AIIHKGFDERHA---YIGGMFGAGIYFAENSSKSNQYVYGIGGGTGCPTHKDRSCYVCHRQMLFCRVTLG 167 (223)
T ss_pred eecCcchh--HHHHhCCCcccc---ccCceeeeeeeeccchhhhccccccccccccCcccccccccccceeEEEEEEEec
Confidence 99999877 899999986533 3799999999999999999999986211 11 479999999999
Q ss_pred CcceeccCCCCcCccCCCCCcceeeeccccCCCCCceeecCCeEecCCCcccCCCCCCCCCCceEEEecCCCcceeeEEE
Q 037230 722 DQVTELKKPPEDTKSLEDKKLGVKGLGRKKTDESEHFFWNDDIKVPGGRLIPSEHKNSPLEYNEYAVYDPKQTSIRFLVG 801 (815)
Q Consensus 722 ~~~~e~~~~~~~~~~~p~G~~Sv~g~G~~~Pdp~~~~~~~dgv~vP~G~~~~~~~~~~~l~ynEyIVYd~~Qv~~rYLv~ 801 (815)
+ +.+...+ .++..+|+|+|||+|. |. ..++.||||||||.+|++|+|||.
T Consensus 168 k-~~~~~~~-~~~~~~P~G~dSv~g~----Ps------------------------~~~~~~~EfVVyd~~Q~YPeYLI~ 217 (223)
T cd01438 168 K-SFLQFSA-MKMAHAPPGHHSVIGR----PS------------------------VNGLAYAEYVIYRGEQAYPEYLIT 217 (223)
T ss_pred c-eeeccCC-cccCCCCCCCcceEcC----CC------------------------CCCcccCEEEEECCCcEeeEEEEE
Confidence 9 7877777 6888999999999984 31 135779999999999999999999
Q ss_pred EEe
Q 037230 802 VKF 804 (815)
Q Consensus 802 ~~~ 804 (815)
++.
T Consensus 218 y~~ 220 (223)
T cd01438 218 YQI 220 (223)
T ss_pred EEe
Confidence 874
No 8
>PF02877 PARP_reg: Poly(ADP-ribose) polymerase, regulatory domain; InterPro: IPR004102 Poly(ADP-ribose) polymerase catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The regulatory domain of the polymerase is almost always associated with the C-terminal catalytic domain (see IPR001290 from INTERPRO). This domain consists of a duplication of two helix-loop-helix structural repeats [].; GO: 0003950 NAD+ ADP-ribosyltransferase activity, 0006471 protein ADP-ribosylation; PDB: 1GS0_B 3FHB_A 3C49_A 3CE0_A 3C4H_A 3KCZ_B 3KJD_B 3L3M_A 3GJW_A 1UK1_A ....
Probab=99.97 E-value=7.2e-32 Score=259.09 Aligned_cols=129 Identities=30% Similarity=0.520 Sum_probs=111.6
Q ss_pred CCCCCHHHHHHHHHHhCHHHHHHHHHHccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhc
Q 037230 452 HSKLDPVVANFMKVLCSQEVYRYALMEMGLDAPDLPIGMLSNVHLNRCEEVLQQFIEAVKSTKETGQKAEAIWTDFSNRW 531 (815)
Q Consensus 452 ~s~L~~~Vq~Li~~I~d~~~~~~~~~e~~~d~~k~PLGkLS~~qI~~a~~vL~ei~~~l~~~~~~~~~~~~~l~~lsn~f 531 (815)
+|+|+++||+||++|||+++|+++|.+|++|..+||||+||++||.+||+||++|+++|... .....+.++||+|
T Consensus 1 ~skL~~~Vq~Li~~If~~~~~~~~m~e~~~D~~kmPLGkLS~~qI~~g~~iL~~i~~~l~~~-----~~~~~i~~lsn~f 75 (133)
T PF02877_consen 1 KSKLPPEVQDLIKLIFDVEMMKQAMKEMGYDTKKMPLGKLSKEQIEKGYEILKEIEELLKEQ-----ERRSKIEDLSNRF 75 (133)
T ss_dssp --SSTHHHHHHHHHHT-HHHHHHHHHHTTB-TTTSTGGGB-HHHHHHHHHHHHHHHHHHHTT-----SSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCHHHHHHHHHHcCCCcccCCchhcCHHHHHHHHHHHHHHHHHHHcc-----ccHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999833 2457899999999
Q ss_pred cccccCC----CCccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCcchhhhh
Q 037230 532 FTLMHSL----RPFIFRDNQEIADHAASSFEAVRDITVASHLIGDMSGSTLDDPLSDCYE 587 (815)
Q Consensus 532 YtlIPh~----~p~~i~~~~~l~~k~~~lle~L~die~A~~ll~~~~~~~~~~pld~~Y~ 587 (815)
||+|||+ +||+|+|.+.|++|+ +||++|.||++|+++++++.. ...||+|++|+
T Consensus 76 YtlIPh~fg~~~~~~I~~~~~l~~k~-~lle~L~die~A~~l~~~~~~-~~~~plD~~Y~ 133 (133)
T PF02877_consen 76 YTLIPHNFGRSRPPVIDTEEKLKEKL-ELLEALLDIEIASKLLKDAQD-EKINPLDYQYK 133 (133)
T ss_dssp HHHSTB-STTS-S--STSHHHHHHHH-HHHHHHHHHHHHHHHHTSSCC-CSSTHHHHHHH
T ss_pred HHHCCCcccCCCCCCcCCHHHHHHHH-HHHHHHHHHHHHHHHHHhhcc-CCCCchhhhcC
Confidence 9999998 899999999999999 999999999999999976433 33899999995
No 9
>cd08003 WGR_PARP2_like WGR domain of poly(ADP-ribose) polymerases. The WGR domain is found in a variety of eukaryotic poly(ADP-ribose) polymerases (PARPs). It has been called WGR after the most conserved central motif of the domain. The domain typically occurs together with a catalytic PARP domain, and is between 70 and 80 residues in length. It has been proposed to function as a nucleic acid binding domain. PARPs catalyze the NAD(+)-dependent synthesis of ADP-ribose polymers and their addition to various nuclear proteins. Higher eukaryotes contain several PARPs and and there may be up to 17 human PARP-like proteins, with three of them (PARP-1, PARP-2, and PARP-3) containing a WGR domain. The synthesis of poly-ADP-ribose requires multiple enzymatic activities for initiation, trans-ADP-ribosylation, elongation, branching, and release of the polymer from the enzyme. This subfamily is composed of human PARP-2 and similar proteins. Similar to PARP-1, PARP-2 is ubiquitously expressed and it
Probab=99.97 E-value=4e-31 Score=241.75 Aligned_cols=101 Identities=24% Similarity=0.428 Sum_probs=95.5
Q ss_pred eEEEeCCeEEEEEEeeecCCCCcccEEEEEEEEcCC-CCeEEEEEeeccCCCCcccccccCCCC-HHHHHHHHHHHHHHH
Q 037230 327 KILEKDGILYNCAFSLCDQGRGMNLYCIVQLITVPD-SNLHLYYKKGKVGDDPNAEERLEEWTG-VDNAIKEFVRLFEEV 404 (815)
Q Consensus 327 hVy~d~~~~Y~~~L~~tDi~~~~NkfY~lQlle~~~-~~y~vf~~wGRVG~~~~g~~k~~~~~s-~e~Ai~~F~k~F~eK 404 (815)
|||+++|.+|+|||++||+++|+|+||+||||+++. +.|+||++|||||+. |++++++|.+ +++|+++|+++|++|
T Consensus 1 hVy~~~~~vy~a~Ln~td~~~n~Nkfy~lQlle~~~~~~y~~~~rWGRVG~~--G~~~l~~~~~~l~~A~~~F~k~F~~K 78 (103)
T cd08003 1 HVYEEGDDVYDAMLNQTNIQQNNNKYYIIQLLEDDAEKIYSVWFRWGRVGKK--GQSSLVPCGSDLEQAKSLFEKKFLDK 78 (103)
T ss_pred CEEecCCeEEEEEEEecccCCCCcceEEEEEEEeCCCCeEEEEEeEcccccc--ccceeccCCCCHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999999987 889999999999995 7999999965 999999999999999
Q ss_pred hcCCCccccccccCccCCCCccccccCC
Q 037230 405 TGNEFEPWEREKKFQKKPLKFYPIDMDD 432 (815)
Q Consensus 405 Tgn~w~~w~~r~~f~k~pgKy~~v~~d~ 432 (815)
|||+ |++|.+|+++||||++|++||
T Consensus 79 Tgn~---W~~R~~f~k~pgKY~~le~dy 103 (103)
T cd08003 79 TKNE---WEDRANFEKVAGKYDLLEMDY 103 (103)
T ss_pred hCCc---hhhccCCCCCCCCceEEeecC
Confidence 9996 588999999999999999987
No 10
>cd08001 WGR_PARP1_like WGR domain of poly(ADP-ribose) polymerase 1 and similar proteins. The WGR domain is found in a variety of eukaryotic poly(ADP-ribose) polymerases (PARPs). It has been called WGR after the most conserved central motif of the domain. The domain typically occurs together with a catalytic PARP domain, and is between 70 and 80 residues in length. It has been proposed to function as a nucleic acid binding domain. PARPs catalyze the NAD(+)-dependent synthesis of ADP-ribose polymers and their addition to various nuclear proteins. Higher eukaryotes contain several PARPs and and there may be up to 17 human PARP-like proteins, with three of them (PARP-1, PARP-2, and PARP-3) containing a WGR domain. The synthesis of poly-ADP-ribose requires multiple enzymatic activities for initiation, trans-ADP-ribosylation, elongation, branching, and release of the polymer from the enzyme. This subfamily is composed of vertebrate PARP-1 and similar proteins, including Arabidopsis thaliana
Probab=99.95 E-value=2.5e-28 Score=224.99 Aligned_cols=103 Identities=37% Similarity=0.668 Sum_probs=97.5
Q ss_pred ceEEEeCCeEEEEEEeeecCCCCcccEEEEEEEEcCC-CCeEEEEEeeccCCCCcccccccCCCCHHHHHHHHHHHHHHH
Q 037230 326 GKILEKDGILYNCAFSLCDQGRGMNLYCIVQLITVPD-SNLHLYYKKGKVGDDPNAEERLEEWTGVDNAIKEFVRLFEEV 404 (815)
Q Consensus 326 ~hVy~d~~~~Y~~~L~~tDi~~~~NkfY~lQlle~~~-~~y~vf~~wGRVG~~~~g~~k~~~~~s~e~Ai~~F~k~F~eK 404 (815)
+|||+++|.+|+|+|+++|+..|+|+||+||||+++. +.|+||++|||||+.. |++++++|+++++|+++|+++|++|
T Consensus 1 ~~v~~~~~~~y~~~L~~~d~~~n~n~fY~lQll~~~~~~~y~~~~~WGRiG~~~-Gq~~~~~~~~~~~A~~~F~k~f~~K 79 (104)
T cd08001 1 AHVLEEGGNLYSAVLGLVDIQTGTNSYYKLQLLEHDKGNRYWVFRSWGRVGTTI-GGNKLEEFSSLEEAKMAFEELYEEK 79 (104)
T ss_pred CeEEeCCCcEEEEEEECcccCCCCcceEEEEEEEECCCCEEEEEEEECccCCcc-CceEccCCCCHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999988 8999999999999963 7999999999999999999999999
Q ss_pred hcCCCccccccccCccCCCCccccccCC
Q 037230 405 TGNEFEPWEREKKFQKKPLKFYPIDMDD 432 (815)
Q Consensus 405 Tgn~w~~w~~r~~f~k~pgKy~~v~~d~ 432 (815)
|||+ |++|.+|+++||||+||++||
T Consensus 80 Tgn~---w~~r~~f~k~~~ky~~~~~d~ 104 (104)
T cd08001 80 TGND---FENRKNFKKKPGKFYPLDIDY 104 (104)
T ss_pred hCCC---CccccCCcccCCcEeEEEecC
Confidence 9996 578999999999999999986
No 11
>cd08002 WGR_PARP3_like WGR domain of poly(ADP-ribose) polymerase 3 and similar proteins. The WGR domain is found in a variety of eukaryotic poly(ADP-ribose) polymerases (PARPs). It has been called WGR after the most conserved central motif of the domain. The domain typically occurs together with a catalytic PARP domain, and is between 70 and 80 residues in length. It has been proposed to function as a nucleic acid binding domain. PARPs catalyze the NAD(+)-dependent synthesis of ADP-ribose polymers and their addition to various nuclear proteins. Higher eukaryotes contain several PARPs and and there may be up to 17 human PARP-like proteins, with three of them (PARP-1, PARP-2, and PARP-3) containing a WGR domain. The synthesis of poly-ADP-ribose requires multiple enzymatic activities for initiation, trans-ADP-ribosylation, elongation, branching, and release of the polymer from the enzyme. This subfamily is composed of human PARP-3 and similar proteins, including Arabidopsis thaliana PARP-
Probab=99.95 E-value=1.4e-27 Score=217.53 Aligned_cols=98 Identities=28% Similarity=0.587 Sum_probs=91.0
Q ss_pred CceEEEeCCeEEEEEEeeecCCCCcccEEEEEEEEcCCCCeEEEEEeeccCCCCcccccccCC-CCHHHHHHHHHHHHHH
Q 037230 325 GGKILEKDGILYNCAFSLCDQGRGMNLYCIVQLITVPDSNLHLYYKKGKVGDDPNAEERLEEW-TGVDNAIKEFVRLFEE 403 (815)
Q Consensus 325 ~~hVy~d~~~~Y~~~L~~tDi~~~~NkfY~lQlle~~~~~y~vf~~wGRVG~~~~g~~k~~~~-~s~e~Ai~~F~k~F~e 403 (815)
++|||+. |+|||++||+++|+|+||+||||+++ +.|+||++|||||+. |++++.++ +++++|+++|+++|.+
T Consensus 2 ~~~~~~~----y~~~Ln~t~~~~n~NkfY~lQll~~~-~~y~v~~~WGRVG~~--Gq~~~~~~~~~l~~A~~~F~k~F~~ 74 (100)
T cd08002 2 GAEVDED----YDCMLNQTNIGHNNNKFYVIQLLESG-KEYYVWNRWGRVGEK--GQNKLKGPWDSLEGAIKDFEKKFKD 74 (100)
T ss_pred CcEEeEE----EEEEEEcccccCCCeeEEEEEEEecC-CEEEEEEEECccCCc--CcceeccCCCCHHHHHHHHHHHHHH
Confidence 6788875 99999999999999999999999988 899999999999996 78888766 5699999999999999
Q ss_pred HhcCCCccccccccCccCCCCccccccCC
Q 037230 404 VTGNEFEPWEREKKFQKKPLKFYPIDMDD 432 (815)
Q Consensus 404 KTgn~w~~w~~r~~f~k~pgKy~~v~~d~ 432 (815)
||||+ |++|.+|+|+||||++|++||
T Consensus 75 KTgn~---W~~R~~f~k~~gky~~ie~dy 100 (100)
T cd08002 75 KTKNN---WEDRENFVPHPGKYTLIEMDY 100 (100)
T ss_pred HhCCc---hhhccCCCcCCCcceEEEecC
Confidence 99996 588999999999999999987
No 12
>cd07997 WGR_PARP WGR domain of poly(ADP-ribose) polymerases. The WGR domain is found in a variety of eukaryotic poly(ADP-ribose) polymerases (PARPs). It has been called WGR after the most conserved central motif of the domain. The domain typically occurs together with a catalytic PARP domain, and is between 70 and 80 residues in length. It has been proposed to function as a nucleic acid binding domain. PARPs catalyze the NAD(+)-dependent synthesis of ADP-ribose polymers and their addition to various nuclear proteins and histones. Higher eukaryotes contain several PARPs and there may be up to 17 human PARP-like proteins, with three of them (PARP-1, PARP-2, and PARP-3) containing a WGR domain. The synthesis of poly-ADP-ribose requires multiple enzymatic activities for initiation, trans-ADP-ribosylation, elongation, branching, and release of the polymer from the enzyme. Poly-ADP-ribosylation was thought to be a reversible post-translational covalent modification that serves as a regulator
Probab=99.92 E-value=1.5e-25 Score=205.80 Aligned_cols=100 Identities=26% Similarity=0.546 Sum_probs=91.6
Q ss_pred EEEeCCeEEEEEEeeecCCCCcccEEEEEEEEcCC-CCeEEEEEeeccCCCCcccccccCCCCHHHHHHHHHHHHHHHhc
Q 037230 328 ILEKDGILYNCAFSLCDQGRGMNLYCIVQLITVPD-SNLHLYYKKGKVGDDPNAEERLEEWTGVDNAIKEFVRLFEEVTG 406 (815)
Q Consensus 328 Vy~d~~~~Y~~~L~~tDi~~~~NkfY~lQlle~~~-~~y~vf~~wGRVG~~~~g~~k~~~~~s~e~Ai~~F~k~F~eKTg 406 (815)
|+.+...+|+|+|+++|++.|+|+||+|||++++. +.|+||++|||||+. |++++.+|.++++|+++|+++|.+|||
T Consensus 2 ~~~~~~~~y~~~L~~~d~~~n~n~fy~lql~~~~~~~~y~v~~~WGRVG~~--Gq~~~~~~~~~~~A~~~F~k~f~~Kt~ 79 (102)
T cd07997 2 VYGDIATVYDATLNQTDISNNNNKFYKIQILESKGPNTYALFTRWGRVGER--GQSQLTPFGSLESAIKEFEKKFKDKTG 79 (102)
T ss_pred cccccCcEEEEEEEeeccCCCCcceEEEEEEEcCCCCeEEEEEEEccCCCc--CceeecCCCCHHHHHHHHHHHHHHHHC
Confidence 44442378999999999999999999999999997 899999999999995 799999999999999999999999999
Q ss_pred CCCccccccccCccCCCCccccccCC
Q 037230 407 NEFEPWEREKKFQKKPLKFYPIDMDD 432 (815)
Q Consensus 407 n~w~~w~~r~~f~k~pgKy~~v~~d~ 432 (815)
|+ |++|.+|+|+||||++|++|+
T Consensus 80 ~~---w~~r~~f~k~~~ky~~i~~d~ 102 (102)
T cd07997 80 NE---WENRPLFKKQPGKYALVELDY 102 (102)
T ss_pred Cc---cccccccccCCCceeEEeecC
Confidence 96 577999999999999999985
No 13
>cd01341 ADP_ribosyl ADP_ribosylating enzymes catalyze the transfer of ADP_ribose from NAD+ to substrates. Bacterial toxins are cytoplasmic and catalyze the transfer of a single ADP_ribose unit to eukaryotic elongation factor 2, halting protein synthesis and killing the cell. Poly(ADP-ribose) polymerases (PARPS 1-3, VPARP, tankyrase) catalyze the addition of up to 100 ADP_ribose units from NAD+. PARPs 1 and 2 are localized in the nucleaus, bind DNA, and are activated by DNA damage. VPARP is part of the vault ribonucleoprotein complex. Tankyrases regulates telomere length in part through poy(ADP_ribosylation) of telomere repeat binding factor 1 (TRF1). Poly(ADP-ribose) polymerase catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The carboxyl-terminal region is the most highly conserved region o
Probab=99.92 E-value=2.3e-25 Score=215.41 Aligned_cols=120 Identities=26% Similarity=0.323 Sum_probs=106.1
Q ss_pred eeeccCCccchhhhcccCCCCCCCCCCCCCceeeeeeeechhhhhhhcccccCCC----------------CCceEEEEE
Q 037230 653 LLWCGTRSSNLLRHLQKGFLPASCSLPVPGYMFGRAIVCSDAAAEAARYGFTAAD----------------RPEGFLVLA 716 (815)
Q Consensus 653 lLwHGSr~~N~~gIL~~Gl~iap~~a~~tG~mFGkGIYFAd~~skS~~Yc~~~~~----------------~~~~~mlLc 716 (815)
+|||||+..||.+||++||+++++.++.+|+|||+|||||+++++|++||..+.. ...++|++|
T Consensus 1 ~l~HGs~~~n~~~I~~~Gl~~~~~~~~~~g~~~G~GiYfa~~~s~S~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~ 80 (137)
T cd01341 1 FLFHGSPPGNVISILKLGLRPASYGVLLNGGMFGKGIYSAPNISKSNGYSVGCDGQHVFQNGKPKVCGRELCVFGFLTLG 80 (137)
T ss_pred CccccCCccchHHHhhCCCCCCCccccccccccCceeeecCChHHhhhhhcccCCcccccccccccccccccceeEEEEE
Confidence 5899999999999999999999988888999999999999999999999988542 355899999
Q ss_pred EEecCCcceeccCCCCcCccCCCCCcceeeeccccCCCCCceeecCCeEecCCCcccCCCCCCCCCCceEEEecC-CCcc
Q 037230 717 VASLGDQVTELKKPPEDTKSLEDKKLGVKGLGRKKTDESEHFFWNDDIKVPGGRLIPSEHKNSPLEYNEYAVYDP-KQTS 795 (815)
Q Consensus 717 eVaLG~~~~e~~~~~~~~~~~p~G~~Sv~g~G~~~Pdp~~~~~~~dgv~vP~G~~~~~~~~~~~l~ynEyIVYd~-~Qv~ 795 (815)
+|++|+ +.+....+..+.++|.|+||+.|++.+.++ ..+.++|||||+. +|+.
T Consensus 81 ~v~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------------------------~~~~~~e~VV~~~~~Qv~ 134 (137)
T cd01341 81 VMSGAT-EESSRVLFPRNFRGATGAEVVDLLVAMCRD-------------------------ALLLPREYIIFEPYSQVS 134 (137)
T ss_pred Eecccc-ccccccccccccCCCCCCeEEEcccccccc-------------------------hhhCCCeEEEecchhhce
Confidence 999999 777766656777889999999999776632 5689999999999 9999
Q ss_pred eee
Q 037230 796 IRF 798 (815)
Q Consensus 796 ~rY 798 (815)
|||
T Consensus 135 ~~Y 137 (137)
T cd01341 135 IRY 137 (137)
T ss_pred ecC
Confidence 998
No 14
>cd01439 TCCD_inducible_PARP_like Poly(ADP-ribose) polymerases catalyse the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA. Poly(ADP-ribose) polymerase is a regulatory component induced by DNA damage. The carboxyl-terminal region is the most highly conserved region of the protein. 2,3,7,8-Tetrachlorodibenzo-p-dioxin (TCDD) causes pleotropic effects in mammalian species through modulating gene expression. TCCD indicible PARP (TiPARP) is a target of TCDD that may contribute to multiple responses to TCDD by modulating protein function through poly ADP-ribosylation
Probab=99.90 E-value=2.4e-24 Score=203.70 Aligned_cols=112 Identities=18% Similarity=0.216 Sum_probs=91.4
Q ss_pred eeeccCCccchhhhcccCCCCCCCCCCCCCceeeeeeeechhhhhhhcccccCC-CCCceEEEEEEEecCCcceeccCCC
Q 037230 653 LLWCGTRSSNLLRHLQKGFLPASCSLPVPGYMFGRAIVCSDAAAEAARYGFTAA-DRPEGFLVLAVASLGDQVTELKKPP 731 (815)
Q Consensus 653 lLwHGSr~~N~~gIL~~Gl~iap~~a~~tG~mFGkGIYFAd~~skS~~Yc~~~~-~~~~~~mlLceVaLG~~~~e~~~~~ 731 (815)
||||||+..++..|+++||+++++.. +|.|||+|||||+++++|++||.... ..+.+.||||+|++|+ .... .
T Consensus 1 ~LfHGt~~~~~~~I~~~GF~~~~~g~--~~~~~G~GiYFA~~~s~S~~Y~~~~~~~~g~~~mfL~rVl~G~-~~~~--~- 74 (121)
T cd01439 1 LLFHGTSADAVEAICRHGFDRRFCGK--HGTMYGKGSYFAKNASYSHQYSKKSPKADGLKEMFLARVLTGD-YTQG--H- 74 (121)
T ss_pred CcccccChhhHHHHHHccCCCccCCC--CCCccCCeeecccChhhhhcccccCcCCCCcEEEEEEEEEecc-eecC--C-
Confidence 69999999999999999999987643 69999999999999999999998754 2478999999999999 5322 2
Q ss_pred CcCccCC--------CCCcceeeeccccCCCCCceeecCCeEecCCCcccCCCCCCCCCCceEEEecCCCcceeeEEEE
Q 037230 732 EDTKSLE--------DKKLGVKGLGRKKTDESEHFFWNDDIKVPGGRLIPSEHKNSPLEYNEYAVYDPKQTSIRFLVGV 802 (815)
Q Consensus 732 ~~~~~~p--------~G~~Sv~g~G~~~Pdp~~~~~~~dgv~vP~G~~~~~~~~~~~l~ynEyIVYd~~Qv~~rYLv~~ 802 (815)
..+..|| .+||||.+- ....++|||||.+|+.+.|||++
T Consensus 75 ~~~~~pP~~~~~~~~~~yDS~vd~--------------------------------~~~p~~~Vvf~~~q~yPeYlI~y 121 (121)
T cd01439 75 PGYRRPPLKPSGVELDRYDSCVDN--------------------------------VSNPSIFVIFSDVQAYPEYLITY 121 (121)
T ss_pred CcccCCCCccCCCCCCCccceeCC--------------------------------CCCCCEEEEEeCCccceeEEEEC
Confidence 3455555 667777541 12357999999999999999974
No 15
>PF08063 PADR1: PADR1 (NUC008) domain; InterPro: IPR012982 This domain is found in poly(ADP-ribose)-synthetases []. The function of this domain is unknown.; GO: 0003950 NAD+ ADP-ribosyltransferase activity, 0005634 nucleus; PDB: 2JVN_A 4DQY_E 2RIQ_A.
Probab=99.87 E-value=3.7e-23 Score=167.49 Aligned_cols=53 Identities=49% Similarity=1.175 Sum_probs=45.6
Q ss_pred HHHHhhhhhhcCCCCCCCCC-CCeeEEeCceeEeecCCcCccccccccCCCCCC
Q 037230 98 VVTKCLDMLFYGPLDKCPVC-NGNLEFDGKRYSCKGMYSEWSTCTFRTKDPPRK 150 (815)
Q Consensus 98 ll~~~aD~~~fG~l~~Cp~C-~g~l~~~~~~Y~C~G~~sewtkC~~~~~~p~R~ 150 (815)
||+||||+|+||+|++||+| +|+|+|++.+|+|+||||||+||+|++++|+|+
T Consensus 1 ll~r~aD~m~fGal~~Cp~C~~~~l~~~~~~Y~C~G~~sewtkC~~~t~~p~R~ 54 (55)
T PF08063_consen 1 LLDRCADGMLFGALEPCPKCKGGQLYFDGSGYKCTGYISEWTKCTYSTKDPKRK 54 (55)
T ss_dssp HHHHHHHHHHHTEE---SSSSE-EEEEETTEEEEESECCTTCEEEEEESS--EE
T ss_pred CHHHhhHHHHhcCCCCCCCCCCCeEEecCCccEeCcccCceeEcccCcCCCCcC
Confidence 78999999999999999999 669999999999999999999999999999996
No 16
>smart00773 WGR Proposed nucleic acid binding domain. This domain is named after its most conserved central motif. It is found in a variety of polyA polymerases as well as in molybdate metabolism regulators (e.g. in E.coli) and other proteins of unknown function. The domain is found in isolation in some proteins and is between 70 and 80 residues in length. It is proposed that it may be a nucleic acid binding domain.
Probab=99.75 E-value=5e-18 Score=150.64 Aligned_cols=82 Identities=28% Similarity=0.535 Sum_probs=74.9
Q ss_pred CCeEEEEEEeeecCCCCcccEEEEEEEEcCCCCeEEEEEeeccCCCCcccccccCCCCHHHHHHHHHHHHHHHhcCCCcc
Q 037230 332 DGILYNCAFSLCDQGRGMNLYCIVQLITVPDSNLHLYYKKGKVGDDPNAEERLEEWTGVDNAIKEFVRLFEEVTGNEFEP 411 (815)
Q Consensus 332 ~~~~Y~~~L~~tDi~~~~NkfY~lQlle~~~~~y~vf~~wGRVG~~~~g~~k~~~~~s~e~Ai~~F~k~F~eKTgn~w~~ 411 (815)
++.+|+++|+++|+..|+|+||.|||++++.+.|+||++|||||+. |+.++.+|.++++|+++|+++|.+||+++|
T Consensus 2 ~~~~~~~~L~~~d~~~n~nkfy~iql~~~~~~~~~v~~~wGRiG~~--g~~~~~~~~s~~~A~~~f~k~~~~Kt~~gy-- 77 (84)
T smart00773 2 GGEIYDVYLNQTDLASNNNKFYRIQLLEDDFGGYSVWRRWGRIGTN--GQTKLETFDSLEDAIKEFEKLFKEKTKNGY-- 77 (84)
T ss_pred CCceeEEEEEccccccCCeeEEEEEEEEcCCCCEEEEEEeeecCCC--CceeeEcCCCHHHHHHHHHHHHHHHhcCCC--
Confidence 4678999999999999999999999999877779999999999987 789999999999999999999999999965
Q ss_pred ccccccC
Q 037230 412 WEREKKF 418 (815)
Q Consensus 412 w~~r~~f 418 (815)
++|..|
T Consensus 78 -~~r~~~ 83 (84)
T smart00773 78 -EERGKF 83 (84)
T ss_pred -cccccC
Confidence 666555
No 17
>PF05406 WGR: WGR domain; InterPro: IPR008893 This domain is named after the most conserved central motif of the domain. It is found in a variety of polyA polymerases as well as the Escherichia coli molybdate metabolism regulator P33345 from SWISSPROT and other proteins of unknown function.The domain is found in isolation in proteins such as Q9JN21 from SWISSPROT and is between 70 and 80 residues in length. ; PDB: 2EOC_A 2RA8_A 4DQY_C 2CR9_A.
Probab=99.71 E-value=3.2e-17 Score=144.55 Aligned_cols=79 Identities=29% Similarity=0.590 Sum_probs=72.7
Q ss_pred CeEEEEEEeeecCCCCcccEEEEEEEEcCCCCeEEEEEeeccCCCCcccccccCCCCHHHHHHHHHHHHHHHhcCCCccc
Q 037230 333 GILYNCAFSLCDQGRGMNLYCIVQLITVPDSNLHLYYKKGKVGDDPNAEERLEEWTGVDNAIKEFVRLFEEVTGNEFEPW 412 (815)
Q Consensus 333 ~~~Y~~~L~~tDi~~~~NkfY~lQlle~~~~~y~vf~~wGRVG~~~~g~~k~~~~~s~e~Ai~~F~k~F~eKTgn~w~~w 412 (815)
+.+|+|+|+++|+..|.|+||.|||++++ .|+|+++|||||+. |+.++.+|.+.++|+.+|+++|.+||+++|
T Consensus 2 ~~~y~~~L~~~d~~~n~~kfY~iql~~~~--~~~v~~~wGRiG~~--gq~~~~~f~s~~eA~~~f~~~~~~K~~~gy--- 74 (81)
T PF05406_consen 2 GIIYNVYLERTDPEKNSNKFYRIQLLPDL--EWVVFRRWGRIGSK--GQTRIKPFDSEEEAIKEFEKLFKEKTGKGY--- 74 (81)
T ss_dssp TEECEEEEEEEETTTTEEEEEEEEEEEET--TEEEEEEEEETTSS--EEEEEEEESSHHHHHHHHHHHHHHHHSSTS---
T ss_pred CcEEEEEEEEEecCCCcEEEEEEEEEeCC--CeEEEEEECCCCCc--CcEEEEeCCCHHHHHHHHHHHHHHHHcCCC---
Confidence 67899999999999999999999999887 49999999999998 689999999999999999999999999965
Q ss_pred cccccC
Q 037230 413 EREKKF 418 (815)
Q Consensus 413 ~~r~~f 418 (815)
.+|.+|
T Consensus 75 ~~~~~f 80 (81)
T PF05406_consen 75 EERDNF 80 (81)
T ss_dssp CCCGG-
T ss_pred cccccC
Confidence 678787
No 18
>cd07994 WGR WGR domain. The WGR domain is found in a variety of eukaryotic poly(ADP-ribose) polymerases (PARPs) as well as the putative Escherichia coli molybdate metabolism regulator and related bacterial proteins, a small family of bacterial DNA ligases, and various other bacterial proteins of unknown function. It has been called WGR after the most conserved central motif of the domain. The domain occurs in single-domain proteins and in a variety of domain architectures, and is between 70 and 80 residues in length. It has been proposed to function as a nucleic acid binding domain.
Probab=99.63 E-value=8.1e-16 Score=132.76 Aligned_cols=69 Identities=26% Similarity=0.477 Sum_probs=63.4
Q ss_pred EEEeeecCCCCcccEEEEEEEEcCC-CCeEEEEEeeccCCCCcccccccCCCCHHHHHHHHHHHHHHHhcCCC
Q 037230 338 CAFSLCDQGRGMNLYCIVQLITVPD-SNLHLYYKKGKVGDDPNAEERLEEWTGVDNAIKEFVRLFEEVTGNEF 409 (815)
Q Consensus 338 ~~L~~tDi~~~~NkfY~lQlle~~~-~~y~vf~~wGRVG~~~~g~~k~~~~~s~e~Ai~~F~k~F~eKTgn~w 409 (815)
++|+.+|. |+|+||+|||++++. +.|+||++|||||+. .|++++..|.++++|+++|+++|.+||++.+
T Consensus 2 ~~l~~~d~--~~nKFy~iql~~~~~~~~~~v~~~WGRiGt~-~Gq~~~~~~~s~~~A~~~f~kl~~~Kt~kGY 71 (73)
T cd07994 2 ATLGFQDI--GSNKYYKLQLLEDDKENRYWVFRSYGRVGTV-IGSTKLEQMPSKEEAEEHFMKLYEEKTGKGY 71 (73)
T ss_pred eEEEEEEC--CCceEEEEEEEeccCCCcEEEEEEECCccCc-CCceeeEcCCCHHHHHHHHHHHHHHHhcCCC
Confidence 68899998 889999999999887 789999999999984 2799999999999999999999999999965
No 19
>cd07996 WGR_MMR_like WGR domain of molybdate metabolism regulator and related proteins. The WGR domain is found in the putative Escherichia coli molybdate metabolism regulator and related bacterial proteins, as well as in various other bacterial proteins of unknown function. It has been called WGR after the most conserved central motif of the domain. The domain appears to occur in single-domain proteins and in a variety of domain architectures, together with ATP-dependent DNA ligase domains, WD40 repeats, leucine-rich repeats, and other domains. It has been proposed to function as a nucleic acid binding domain.
Probab=99.34 E-value=3.5e-12 Score=110.42 Aligned_cols=70 Identities=16% Similarity=0.236 Sum_probs=64.3
Q ss_pred EEEeeecCCCCcccEEEEEEEEcCCCCeEEEEEeeccCCCCcccccccCCCCHHHHHHHHHHHHHHHhcCCC
Q 037230 338 CAFSLCDQGRGMNLYCIVQLITVPDSNLHLYYKKGKVGDDPNAEERLEEWTGVDNAIKEFVRLFEEVTGNEF 409 (815)
Q Consensus 338 ~~L~~tDi~~~~NkfY~lQlle~~~~~y~vf~~wGRVG~~~~g~~k~~~~~s~e~Ai~~F~k~F~eKTgn~w 409 (815)
+.|.++|...|.|+||.|||.++..+.|+|+++|||||+. |+.+...|.|.++|+.+|+++|.+||++.+
T Consensus 2 ~~l~~~d~~~n~~kfy~i~l~~~lfg~~~v~~~wGRiG~~--Gq~~~~~~~s~~~A~~~~~k~~~~K~~~GY 71 (74)
T cd07996 2 TRLERIDPERNSARFYEIELEGDLFGEWSLVRRWGRIGTK--GQSRTKTFDSEEEALKAAEKLIREKLKRGY 71 (74)
T ss_pred eEEEEECcccCCCcEEEEEEcccCCCCEEEEEEECCCCCC--CceEEEECCCHHHHHHHHHHHHHHHHhcCC
Confidence 4688999999999999999999666889999999999965 788999999999999999999999999965
No 20
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=99.11 E-value=1.6e-10 Score=99.54 Aligned_cols=75 Identities=29% Similarity=0.422 Sum_probs=66.6
Q ss_pred CCCCCCcEEEEeeccccchHHHHHHHHHcCCEEEeecc-ceeEEEeChHHHhcCCchhHHHHHHcCCcEechhHHHHHh
Q 037230 187 VKPFTGMTISLMGRLSRTHQYWRTTIEKHGGKVAASPI-GLTCLVASPAERERGGSSKLVEAMERGTRVVSEAWLIDSI 264 (815)
Q Consensus 187 ~~~L~g~~~~isG~l~~~r~elk~~Ie~~GG~v~~~vs-~~thlI~t~~e~~k~~s~K~~~A~~~gI~IVsed~L~d~~ 264 (815)
.++|+|++|++.|..+..+++|.++|+.+||+++..++ .+||||+... ... +.|+..|...+|+||+++||.+|+
T Consensus 3 ~~~F~g~~f~i~~~~~~~~~~l~~~i~~~GG~v~~~~~~~~thvI~~~~--~~~-~~k~~~~~~~~i~iV~~~Wi~~ci 78 (78)
T PF00533_consen 3 PKIFEGCTFCISGFDSDEREELEQLIKKHGGTVSNSFSKKTTHVIVGNP--NKR-TKKYKAAIANGIPIVSPDWIEDCI 78 (78)
T ss_dssp TTTTTTEEEEESSTSSSHHHHHHHHHHHTTEEEESSSSTTSSEEEESSS--HCC-CHHHHHHHHTTSEEEETHHHHHHH
T ss_pred CCCCCCEEEEEccCCCCCHHHHHHHHHHcCCEEEeecccCcEEEEeCCC--CCc-cHHHHHHHHCCCeEecHHHHHHhC
Confidence 46799999999666667899999999999999999999 9999999975 122 588999999999999999999996
No 21
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=98.99 E-value=5e-10 Score=93.70 Aligned_cols=62 Identities=31% Similarity=0.395 Sum_probs=53.2
Q ss_pred cEEEEeeccccchHHHHHHHHHcCCEEEeecc-ceeEEEeChHHHhcCCchhHHHHHHcCCcEechhH
Q 037230 193 MTISLMGRLSRTHQYWRTTIEKHGGKVAASPI-GLTCLVASPAERERGGSSKLVEAMERGTRVVSEAW 259 (815)
Q Consensus 193 ~~~~isG~l~~~r~elk~~Ie~~GG~v~~~vs-~~thlI~t~~e~~k~~s~K~~~A~~~gI~IVsed~ 259 (815)
++|+++|..+..+++|.++|+.+||+++..++ ++||||+... .+.|++.|+++|||||+.+|
T Consensus 1 ~~i~~sg~~~~~~~~l~~~i~~~Gg~~~~~lt~~~THLI~~~~-----~~~K~~~A~~~gi~vV~~~W 63 (63)
T PF12738_consen 1 VVICFSGFSGKERSQLRKLIEALGGKYSKDLTKKTTHLICSSP-----EGKKYRKAKEWGIPVVSPDW 63 (63)
T ss_dssp -EEEEEEB-TTTCCHHHHHHHCTT-EEESSSSTT-SEEEEES-------HHHHHHHHHCTSEEEEHHH
T ss_pred CEEEECCCCHHHHHHHHHHHHHCCCEEeccccCCceEEEEeCC-----CcHHHHHHHHCCCcEECCCC
Confidence 57999999888899999999999999999999 9999999653 26999999999999999998
No 22
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]
Probab=98.97 E-value=9.1e-10 Score=128.06 Aligned_cols=72 Identities=28% Similarity=0.403 Sum_probs=67.7
Q ss_pred CCCCCcEEEEeeccc-cchHHHHHHHHHcCCEEEeecc-ceeEEEeChHHHhcCCchhHHHHHHcCCcEechhHHHHHh
Q 037230 188 KPFTGMTISLMGRLS-RTHQYWRTTIEKHGGKVAASPI-GLTCLVASPAERERGGSSKLVEAMERGTRVVSEAWLIDSI 264 (815)
Q Consensus 188 ~~L~g~~~~isG~l~-~~r~elk~~Ie~~GG~v~~~vs-~~thlI~t~~e~~k~~s~K~~~A~~~gI~IVsed~L~d~~ 264 (815)
.+|.|++||+||+|+ .+|+++|.+|+++||+|+++|| +|++||+++ ++ ++|+.+|+++||+|++|++|...+
T Consensus 593 ~~l~gkt~V~TGtL~~~sR~eak~~le~lGakv~~SVSkktD~vvaG~----~a-GSKl~kA~eLgv~i~~E~~~~~ll 666 (667)
T COG0272 593 SPLAGKTFVLTGTLEGMSRDEAKALLEALGAKVSGSVSKKTDYVVAGE----NA-GSKLAKAQELGVKIIDEEEFLALL 666 (667)
T ss_pred cccCCCEEEEeccCCCCCHHHHHHHHHHcCCEEeceecccccEEEEcC----CC-ChHHHHHHHcCCeEecHHHHHHhh
Confidence 679999999999999 8999999999999999999999 999999998 45 489999999999999999998765
No 23
>PRK06063 DNA polymerase III subunit epsilon; Provisional
Probab=98.93 E-value=2.2e-09 Score=117.92 Aligned_cols=74 Identities=23% Similarity=0.241 Sum_probs=67.1
Q ss_pred CCCCcEEEEeeccccchHHHHHHHHHcCCEEEeecc-ceeEEEeChHHHhcCCchhHHHHHHcCCcEechhHHHHHhh
Q 037230 189 PFTGMTISLMGRLSRTHQYWRTTIEKHGGKVAASPI-GLTCLVASPAERERGGSSKLVEAMERGTRVVSEAWLIDSIE 265 (815)
Q Consensus 189 ~L~g~~~~isG~l~~~r~elk~~Ie~~GG~v~~~vs-~~thlI~t~~e~~k~~s~K~~~A~~~gI~IVsed~L~d~~~ 265 (815)
.|.|++|||||.|+.+|++++++|+.+||+|+++|| +|++||+++... . ++|+++|+++||||++|+.|.+.+.
T Consensus 232 l~~g~~~v~TG~l~~~R~e~~~~~~~~G~~v~~sVs~~t~~lv~g~~~~--~-ssK~~kA~~~gi~ii~e~~f~~ll~ 306 (313)
T PRK06063 232 LVQGMRVALSAEVSRTHEELVERILHAGLAYSDSVDRDTSLVVCNDPAP--E-QGKGYHARQLGVPVLDEAAFLELLR 306 (313)
T ss_pred ccCCCEEEEecCCCCCHHHHHHHHHHcCCEecCccccCccEEEECCCCC--c-ccHHHHHHHcCCccccHHHHHHHHH
Confidence 368999999999998999999999999999999999 999999997421 1 4899999999999999999998874
No 24
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=98.93 E-value=1.6e-09 Score=129.01 Aligned_cols=73 Identities=15% Similarity=0.196 Sum_probs=67.5
Q ss_pred CCCCCcEEEEeeccc-cchHHHHHHHHHcCCEEEeecc-ceeEEEeChHHHhcCCchhHHHHHHcCCcEechhHHHHHhh
Q 037230 188 KPFTGMTISLMGRLS-RTHQYWRTTIEKHGGKVAASPI-GLTCLVASPAERERGGSSKLVEAMERGTRVVSEAWLIDSIE 265 (815)
Q Consensus 188 ~~L~g~~~~isG~l~-~~r~elk~~Ie~~GG~v~~~vs-~~thlI~t~~e~~k~~s~K~~~A~~~gI~IVsed~L~d~~~ 265 (815)
.+|.|++|||||+|+ .+|++++++|+++||+++++|| +|++||+++ ++ ++|+++|+++||||++|+.|.+.++
T Consensus 592 ~~l~gktfV~TG~l~~~~R~e~~~lie~~Ggkv~ssVSkktd~LV~G~----~a-GsKl~KA~~LGI~Ii~e~~f~~~l~ 666 (669)
T PRK14350 592 SFLFGKKFCITGSFNGYSRSVLIDKLTKKGAIFNTCVTKYLDFLLVGE----KA-GLKLKKANNLGIKIMSLFDIKSYVD 666 (669)
T ss_pred CccCCcEEEEecccCCCCHHHHHHHHHHcCCEEeccccCCCcEEEECC----CC-CchHHHHHHcCCEEecHHHHHHHhc
Confidence 469999999999997 6899999999999999999999 999999996 45 4899999999999999999988764
No 25
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=98.93 E-value=3e-09 Score=88.45 Aligned_cols=70 Identities=31% Similarity=0.551 Sum_probs=62.1
Q ss_pred CcEEEEeecc-ccchHHHHHHHHHcCCEEEeecc-ceeEEEeChHHHhcCCchhHHHHHHcCCcEechhHHHHHhh
Q 037230 192 GMTISLMGRL-SRTHQYWRTTIEKHGGKVAASPI-GLTCLVASPAERERGGSSKLVEAMERGTRVVSEAWLIDSIE 265 (815)
Q Consensus 192 g~~~~isG~l-~~~r~elk~~Ie~~GG~v~~~vs-~~thlI~t~~e~~k~~s~K~~~A~~~gI~IVsed~L~d~~~ 265 (815)
|+.|+++|.+ ...+.+|+++|+.+||++...++ .+||||+..... ..++..|...+++||+++||.+|++
T Consensus 1 ~~~~~i~g~~~~~~~~~l~~~i~~~Gg~v~~~~~~~~thvI~~~~~~----~~~~~~~~~~~~~iV~~~Wi~~~~~ 72 (72)
T cd00027 1 GLTFVITGDLPSEERDELKELIEKLGGKVTSSVSKKTTHVIVGSDAG----PKKLLKAIKLGIPIVTPEWLLDCLK 72 (72)
T ss_pred CCEEEEEecCCCcCHHHHHHHHHHcCCEEeccccCCceEEEECCCCC----chHHHHHHHcCCeEecHHHHHHHhC
Confidence 6899999998 67899999999999999999999 999999998543 2337888899999999999999973
No 26
>smart00292 BRCT breast cancer carboxy-terminal domain.
Probab=98.85 E-value=7.2e-09 Score=88.18 Aligned_cols=76 Identities=28% Similarity=0.478 Sum_probs=65.0
Q ss_pred CCCCCcEEEEeecc-ccchHHHHHHHHHcCCEEEeecc--ceeEEEeChHHHhcCCchhHHHHHHcCCcEechhHHHHHh
Q 037230 188 KPFTGMTISLMGRL-SRTHQYWRTTIEKHGGKVAASPI--GLTCLVASPAERERGGSSKLVEAMERGTRVVSEAWLIDSI 264 (815)
Q Consensus 188 ~~L~g~~~~isG~l-~~~r~elk~~Ie~~GG~v~~~vs--~~thlI~t~~e~~k~~s~K~~~A~~~gI~IVsed~L~d~~ 264 (815)
++|.|++|+++|.+ ...++.+.++|..+||+++..++ .+||+|++..+.. ..++..|...+++||+++||.+|+
T Consensus 1 ~~f~g~~~~~~g~~~~~~~~~l~~~i~~~Gg~~~~~~~~~~~thvi~~~~~~~---~~~~~~~~~~~~~iV~~~Wi~~~~ 77 (80)
T smart00292 1 KLFKGKVFVITGKFDKNERDELKELIEALGGKVTSSLSSKTTTHVIVGSPEGG---KLELLLAIALGIPIVTEDWLLDCL 77 (80)
T ss_pred CccCCeEEEEeCCCCCccHHHHHHHHHHcCCEEecccCccceeEEEEcCCCCc---cHHHHHHHHcCCCCccHHHHHHHH
Confidence 36999999999944 46799999999999999999998 7999999986442 133688888999999999999998
Q ss_pred hh
Q 037230 265 EK 266 (815)
Q Consensus 265 ~~ 266 (815)
..
T Consensus 78 ~~ 79 (80)
T smart00292 78 KA 79 (80)
T ss_pred HC
Confidence 75
No 27
>PRK06195 DNA polymerase III subunit epsilon; Validated
Probab=98.80 E-value=7.5e-09 Score=113.61 Aligned_cols=78 Identities=22% Similarity=0.294 Sum_probs=68.7
Q ss_pred CCCCCCcEEEEeeccc-cchHHHHHHHHHcCCEEEeecc-ceeEEEeChHHH-----hcCCchhHHHHHHc-----CCcE
Q 037230 187 VKPFTGMTISLMGRLS-RTHQYWRTTIEKHGGKVAASPI-GLTCLVASPAER-----ERGGSSKLVEAMER-----GTRV 254 (815)
Q Consensus 187 ~~~L~g~~~~isG~l~-~~r~elk~~Ie~~GG~v~~~vs-~~thlI~t~~e~-----~k~~s~K~~~A~~~-----gI~I 254 (815)
..+|.|++|||||.|. .+|++++++|+.+||+|+++|| +||+||++.... .+. ++|+++|+++ ||+|
T Consensus 218 ~~~l~g~~~vfTG~l~~~~R~~~~~~~~~~Gg~v~~sVs~~t~~lV~G~~~~~~~~~~~~-~~K~~kA~~l~~~g~~i~i 296 (309)
T PRK06195 218 FTAFKEEVVVFTGGLASMTRDEAMILVRRLGGTVGSSVTKKTTYLVTNTKDIEDLNREEM-SNKLKKAIDLKKKGQNIKF 296 (309)
T ss_pred CccccCCEEEEccccCCCCHHHHHHHHHHhCCEecCCcccCceEEEECCCcchhhcccCc-ChHHHHHHHHHhCCCCcEE
Confidence 4579999999999995 7999999999999999999999 999999996432 134 5899999998 9999
Q ss_pred echhHHHHHhh
Q 037230 255 VSEAWLIDSIE 265 (815)
Q Consensus 255 Vsed~L~d~~~ 265 (815)
++|+.|.+.+.
T Consensus 297 i~E~~f~~l~~ 307 (309)
T PRK06195 297 LNEEEFLQKCK 307 (309)
T ss_pred ecHHHHHHHHh
Confidence 99999988765
No 28
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=98.74 E-value=1.8e-08 Score=120.62 Aligned_cols=75 Identities=24% Similarity=0.310 Sum_probs=68.9
Q ss_pred CCCCCcEEEEeeccc-cchHHHHHHHHHcCCEEEeecc-ceeEEEeChHHHhcCCchhHHHHHHcCCcEechhHHHHHhh
Q 037230 188 KPFTGMTISLMGRLS-RTHQYWRTTIEKHGGKVAASPI-GLTCLVASPAERERGGSSKLVEAMERGTRVVSEAWLIDSIE 265 (815)
Q Consensus 188 ~~L~g~~~~isG~l~-~~r~elk~~Ie~~GG~v~~~vs-~~thlI~t~~e~~k~~s~K~~~A~~~gI~IVsed~L~d~~~ 265 (815)
.+|.|++|||||+|. .+|++++++|+++||+++++|| +||+||++.. +|++|+++|+++||+|++|+.|.+.+.
T Consensus 608 ~~l~g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~sVs~kt~~Lv~G~~----~g~sKl~kA~~lgi~ii~E~~f~~ll~ 683 (689)
T PRK14351 608 DALDGLTFVFTGSLSGYTRSEAQELVEAHGGNATGSVSGNTDYLVVGEN----PGQSKRDDAEANDVPTLDEEEFEELLA 683 (689)
T ss_pred CCCCCcEEEEccCCCCCCHHHHHHHHHHcCCEEcCCcCCCccEEEEcCC----CChhHHHHHHHCCCeEecHHHHHHHHH
Confidence 469999999999997 6999999999999999999999 9999999973 444899999999999999999999886
Q ss_pred h
Q 037230 266 K 266 (815)
Q Consensus 266 ~ 266 (815)
.
T Consensus 684 ~ 684 (689)
T PRK14351 684 E 684 (689)
T ss_pred h
Confidence 5
No 29
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated
Probab=98.67 E-value=3.5e-08 Score=118.06 Aligned_cols=72 Identities=29% Similarity=0.358 Sum_probs=66.8
Q ss_pred CCCCcEEEEeeccc-cchHHHHHHHHHcCCEEEeecc-ceeEEEeChHHHhcCCchhHHHHHHcCCcEechhHHHHHhh
Q 037230 189 PFTGMTISLMGRLS-RTHQYWRTTIEKHGGKVAASPI-GLTCLVASPAERERGGSSKLVEAMERGTRVVSEAWLIDSIE 265 (815)
Q Consensus 189 ~L~g~~~~isG~l~-~~r~elk~~Ie~~GG~v~~~vs-~~thlI~t~~e~~k~~s~K~~~A~~~gI~IVsed~L~d~~~ 265 (815)
+|.|++|||||+|+ .+|++++++|+++||+|+++|| +|++||++.. . ++|+++|+++||+|++|+.|.+++.
T Consensus 590 ~~~g~~~v~TG~l~~~~R~e~~~~i~~~G~~v~~sVs~kt~~lv~G~~----~-gsK~~kA~~lgI~ii~E~~f~~~l~ 663 (665)
T PRK07956 590 DLAGKTVVLTGTLEQLSRDEAKEKLEALGAKVSGSVSKKTDLVVAGEA----A-GSKLAKAQELGIEVLDEEEFLRLLG 663 (665)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHcCCEEeCcccCCCCEEEECCC----C-ChHHHHHHHcCCeEEcHHHHHHHHh
Confidence 49999999999997 5999999999999999999999 9999999973 4 4899999999999999999998875
No 30
>TIGR00575 dnlj DNA ligase, NAD-dependent. The member of this family from Treponema pallidum differs in having three rather than just one copy of the BRCT (BRCA1 C Terminus) domain (pfam00533) at the C-terminus. It is included in the seed.
Probab=98.60 E-value=5.8e-08 Score=116.07 Aligned_cols=68 Identities=34% Similarity=0.464 Sum_probs=62.6
Q ss_pred CCCCCcEEEEeeccc-cchHHHHHHHHHcCCEEEeecc-ceeEEEeChHHHhcCCchhHHHHHHcCCcEechhHH
Q 037230 188 KPFTGMTISLMGRLS-RTHQYWRTTIEKHGGKVAASPI-GLTCLVASPAERERGGSSKLVEAMERGTRVVSEAWL 260 (815)
Q Consensus 188 ~~L~g~~~~isG~l~-~~r~elk~~Ie~~GG~v~~~vs-~~thlI~t~~e~~k~~s~K~~~A~~~gI~IVsed~L 260 (815)
.+|.|++|||||+|+ .+|++++++|+++||+|+++|| +|++||++. +. ++|+++|+++||+|++|+.|
T Consensus 583 ~~l~gk~~v~TG~l~~~~R~~~~~~i~~~G~~v~~sVs~kt~~lv~G~----~~-gsKl~kA~~lgi~ii~E~~~ 652 (652)
T TIGR00575 583 SPLAGKTFVLTGTLSQMSRDEAKELLENLGGKVASSVSKKTDYVIAGE----KA-GSKLAKAQELGIPIINEEEL 652 (652)
T ss_pred CCccCcEEEEeccCCCCCHHHHHHHHHHcCCEEeCCcCCCccEEEECC----CC-ChHHHHHHHcCCcEechhhC
Confidence 469999999999997 6899999999999999999999 999999997 34 47999999999999999764
No 31
>COG5275 BRCT domain type II [General function prediction only]
Probab=98.50 E-value=2.3e-07 Score=93.51 Aligned_cols=76 Identities=22% Similarity=0.288 Sum_probs=70.3
Q ss_pred CCCCCCcEEEEeeccc-cchHHHHHHHHHcCCEEEeecc-ceeEEEeChHHHhcCCchhHHHHHHcCCcEechhHHHHHh
Q 037230 187 VKPFTGMTISLMGRLS-RTHQYWRTTIEKHGGKVAASPI-GLTCLVASPAERERGGSSKLVEAMERGTRVVSEAWLIDSI 264 (815)
Q Consensus 187 ~~~L~g~~~~isG~l~-~~r~elk~~Ie~~GG~v~~~vs-~~thlI~t~~e~~k~~s~K~~~A~~~gI~IVsed~L~d~~ 264 (815)
..+|.|++|+|+|.|+ .+|++.+.+|.-+||+|+...+ ++++||.++ ++|.+||+++++++|+++.|+-|..+|
T Consensus 154 ~~cL~G~~fVfTG~l~TlsR~~a~~lvk~yGgrvT~~pSskTtflvlGd----naGP~K~ekiKqlkIkaidEegf~~LI 229 (276)
T COG5275 154 RECLKGKVFVFTGDLKTLSRDDAKTLVKVYGGRVTAVPSSKTTFLVLGD----NAGPSKMEKIKQLKIKAIDEEGFDSLI 229 (276)
T ss_pred cccccccEEEEecccccccchhHHHHHHHhCCeeecccccceeEEEecC----CCChHHHHHHHHhCCccccHHHHHHHH
Confidence 4679999999999998 7899999999999999999999 999999998 456799999999999999999998887
Q ss_pred hh
Q 037230 265 EK 266 (815)
Q Consensus 265 ~~ 266 (815)
..
T Consensus 230 ~~ 231 (276)
T COG5275 230 KD 231 (276)
T ss_pred hc
Confidence 54
No 32
>COG3831 Uncharacterized conserved protein [Function unknown]
Probab=98.26 E-value=2.8e-06 Score=74.52 Aligned_cols=66 Identities=17% Similarity=0.316 Sum_probs=58.2
Q ss_pred EEEEeeecCCCCcccEEEEEEEEcCCCCeEEEEEeeccCCCCcccccccCCCCHHHHHHHHHHHHHHHhcCCC
Q 037230 337 NCAFSLCDQGRGMNLYCIVQLITVPDSNLHLYYKKGKVGDDPNAEERLEEWTGVDNAIKEFVRLFEEVTGNEF 409 (815)
Q Consensus 337 ~~~L~~tDi~~~~NkfY~lQlle~~~~~y~vf~~wGRVG~~~~g~~k~~~~~s~e~Ai~~F~k~F~eKTgn~w 409 (815)
...|.+.|-..|.++||.|-+... .|-++|||||+. |++++..|.+.++|..+|.++-.+|....+
T Consensus 2 ~~~l~~~D~~~n~~kFy~~~i~g~-----~L~~~wGRiG~~--Gq~~~k~F~~~~~a~~~~~kLi~~KrkkGY 67 (85)
T COG3831 2 RLYLERIDEKRNMAKFYAVEIEGA-----ELTRNWGRIGTK--GQSQIKSFDDSADAEKAALKLIREKRKKGY 67 (85)
T ss_pred eeEEEEecccccccceEEEEEecc-----eeEEeecccccC--cceeeeeCCCHHHHHHHHHHHHHHHHhccc
Confidence 456889999999999999987732 677899999998 699999999999999999999999998854
No 33
>KOG3226 consensus DNA repair protein [Replication, recombination and repair]
Probab=97.92 E-value=1.1e-05 Score=87.16 Aligned_cols=88 Identities=19% Similarity=0.303 Sum_probs=82.0
Q ss_pred CCCCCCcEEEEeeccccchHHHHHHHHHcCCEEEeecc-ceeEEEeChHHHhcCCchhHHHHHHcCCcEechhHHHHHhh
Q 037230 187 VKPFTGMTISLMGRLSRTHQYWRTTIEKHGGKVAASPI-GLTCLVASPAERERGGSSKLVEAMERGTRVVSEAWLIDSIE 265 (815)
Q Consensus 187 ~~~L~g~~~~isG~l~~~r~elk~~Ie~~GG~v~~~vs-~~thlI~t~~e~~k~~s~K~~~A~~~gI~IVsed~L~d~~~ 265 (815)
++.|.|.+||++|.....|.+|......+|+++...-+ ++|||||.-. + +.|+.+..-+|=.||+-+|+.+|-.
T Consensus 315 ~klL~GVV~VlSGfqNP~Rs~LRskAl~LGAkY~pDW~~gsThLICAF~----N-TPKy~QV~g~Gg~IV~keWI~~Cy~ 389 (508)
T KOG3226|consen 315 SKLLEGVVFVLSGFQNPERSTLRSKALTLGAKYQPDWNAGSTHLICAFP----N-TPKYRQVEGNGGTIVSKEWITECYA 389 (508)
T ss_pred HHhhhceEEEEecccCchHHHHHHHHHhhcccccCCcCCCceeEEEecC----C-CcchhhcccCCceEeeHHHHHHHHH
Confidence 67899999999999998999999999999999999999 9999999863 2 6899999999999999999999999
Q ss_pred hcCCCCCccccccc
Q 037230 266 KQEAQPLEAYDLVT 279 (815)
Q Consensus 266 ~~~~l~~~~Y~i~s 279 (815)
.++.+|...|.+..
T Consensus 390 ~kk~lp~rrYlm~~ 403 (508)
T KOG3226|consen 390 QKKLLPIRRYLMHA 403 (508)
T ss_pred HHhhccHHHHHhcC
Confidence 99999999999974
No 34
>cd07998 WGR_DNA_ligase WGR domain of bacterial DNA ligases. The WGR domain is found in a small family of predicted bacterial DNA ligases. It has been called WGR after the most conserved central motif of the domain. The domain typically occurs in together with an ATP-dependent DNA ligase domain, and is between 70 and 80 residues in length. It has been proposed to function as a nucleic acid binding domain.
Probab=97.88 E-value=8.7e-05 Score=64.53 Aligned_cols=60 Identities=20% Similarity=0.257 Sum_probs=50.6
Q ss_pred CcccEEEEEEEEcCCCCeEEEEEeeccCCCCcccccc--cCCCCHHHHHHHHHHHHHHHhcCCC
Q 037230 348 GMNLYCIVQLITVPDSNLHLYYKKGKVGDDPNAEERL--EEWTGVDNAIKEFVRLFEEVTGNEF 409 (815)
Q Consensus 348 ~~NkfY~lQlle~~~~~y~vf~~wGRVG~~~~g~~k~--~~~~s~e~Ai~~F~k~F~eKTgn~w 409 (815)
+.+|||.+-|.+..+..|-|-.+|||+|+.+ ++.. ..+.+.+.|.++|.++-.+||...+
T Consensus 11 ~S~Kfyev~~~~~~d~g~~v~~~yGR~Gt~g--q~~tkt~~~~~~~~A~k~~~Klv~eK~~KGY 72 (77)
T cd07998 11 NSDKVYEVDLFEVSDDGYVVNFRYGRRGSAL--REGTKTVAPVTLEAAEKIFDKLVKSKTNKGY 72 (77)
T ss_pred CCceEEEEEEEeccCCceEEEEEEccccCCc--ccccccCCCCCHHHHHHHHHHHHHHHhcCCc
Confidence 5689999999987557899999999999985 5544 4557899999999999999998754
No 35
>KOG1929 consensus Nucleotide excision repair factor NEF2, RAD4/CUT5 component [Replication, recombination and repair]
Probab=97.48 E-value=0.00012 Score=88.56 Aligned_cols=89 Identities=27% Similarity=0.411 Sum_probs=80.4
Q ss_pred CCCCCCcEEEEeeccccchHHHHHHHHHcCCEEEeecc-ceeEEEeChHHHhcCCchhHHHHHHcCCcEechhHHHHHhh
Q 037230 187 VKPFTGMTISLMGRLSRTHQYWRTTIEKHGGKVAASPI-GLTCLVASPAERERGGSSKLVEAMERGTRVVSEAWLIDSIE 265 (815)
Q Consensus 187 ~~~L~g~~~~isG~l~~~r~elk~~Ie~~GG~v~~~vs-~~thlI~t~~e~~k~~s~K~~~A~~~gI~IVsed~L~d~~~ 265 (815)
.+.+.|+.||++|.....+.+++.+|-++||++...++ .+++++..+.- + +.|++.|.+++++||+.+|+++++.
T Consensus 101 ~p~~~~~~Vc~tgl~~~eK~ei~~~v~k~gg~~~~~L~s~v~~~~~~~~~---~-~~kYe~al~wn~~v~~~~w~~~s~~ 176 (811)
T KOG1929|consen 101 CPGFFGLKVCLTGLSGDEKSEIKILVPKHGGTLHRSLSSDVNSLKILPEV---K-TEKYEQALKWNIPVVSDDWLFDSIE 176 (811)
T ss_pred CCcccceEEEecccchHHHHHHHHHhhhcccEEehhhhhhhheeeecccc---c-hHHHHHHHhhCCccccHHHHhhhhc
Confidence 56799999999999888899999999999999999999 88888877742 2 3799999999999999999999999
Q ss_pred hcCCCCCccccccc
Q 037230 266 KQEAQPLEAYDLVT 279 (815)
Q Consensus 266 ~~~~l~~~~Y~i~s 279 (815)
++..++...|.+..
T Consensus 177 ~~~~~~~~~~e~~~ 190 (811)
T KOG1929|consen 177 KTAVLETKPYEGAP 190 (811)
T ss_pred cccccccccccccc
Confidence 99999999998874
No 36
>PRK05601 DNA polymerase III subunit epsilon; Validated
Probab=96.54 E-value=0.0039 Score=69.61 Aligned_cols=77 Identities=13% Similarity=0.201 Sum_probs=67.3
Q ss_pred CCCCCCcEEEEeeccccchHHHHHHHHHcCCEEEeecc-ceeEEEeChHHHhcCCchhHHHHHHcCCcEechhHHHHHhh
Q 037230 187 VKPFTGMTISLMGRLSRTHQYWRTTIEKHGGKVAASPI-GLTCLVASPAERERGGSSKLVEAMERGTRVVSEAWLIDSIE 265 (815)
Q Consensus 187 ~~~L~g~~~~isG~l~~~r~elk~~Ie~~GG~v~~~vs-~~thlI~t~~e~~k~~s~K~~~A~~~gI~IVsed~L~d~~~ 265 (815)
.+...||.|+++|-...++++|.+.+...|=.++.+|+ .|..|||+...- .+.|...|++.|||+|++.-|.+++.
T Consensus 292 ~~lv~Gm~v~~~~e~~~~~d~li~~~~~agL~y~~~~~r~tslvv~n~~~~---~~gk~~~a~~~gipl~~d~~fl~~~~ 368 (377)
T PRK05601 292 KGLVAGMEVVVAPEITMDPDIIIQAIVRAGLAYSEKLTRQTSVVVCNQTRD---LDGKAMHAQRKGIPLLSDVAFLAAVE 368 (377)
T ss_pred CccccCcEEEEeCCccCCHHHHHHHHHHccchhhhccccceeEEEeCCCCC---ccchhhhhhhcCCCccCHHHHHHHHH
Confidence 45679999999999999999999999999999999999 888888887533 25799999999999999988888765
Q ss_pred h
Q 037230 266 K 266 (815)
Q Consensus 266 ~ 266 (815)
.
T Consensus 369 ~ 369 (377)
T PRK05601 369 R 369 (377)
T ss_pred H
Confidence 4
No 37
>KOG1037 consensus NAD+ ADP-ribosyltransferase Parp, required for poly-ADP ribosylation of nuclear proteins [Transcription; Replication, recombination and repair; Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.001 Score=78.07 Aligned_cols=105 Identities=10% Similarity=-0.108 Sum_probs=93.2
Q ss_pred cchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhC--CCCCCChHHHHHHhhhhhhcCCCCCCCCCCCeeEEeCceeEeec
Q 037230 55 KRSGDVTAEFEEFCKSIEGQLSAEQMREILELNG--QDSSGSDVAVVTKCLDMLFYGPLDKCPVCNGNLEFDGKRYSCKG 132 (815)
Q Consensus 55 ~~~k~q~~~lw~~~d~l~~~~~~~~l~~lL~~N~--q~~~~~~~~ll~~~aD~~~fG~l~~Cp~C~g~l~~~~~~Y~C~G 132 (815)
..|..|..+.|...+.+..-++..+++.+++.|. +-.+.++..+.+.+++||.|+++.+|..|++++.+.+..|.|.+
T Consensus 321 ~kmi~~~~~~~~~~~~~~~~~~~~~l~k~~~~~e~~~~~~~~~~~~r~llw~gs~~~n~a~~l~~g~~~~~~~~~~~g~~ 400 (531)
T KOG1037|consen 321 FKMIAQYVEKTHAKTSTVKVVQIADLKKVNEKNEADRKVDISELINRQLLWHGSRFGNLAGILSPGLRLAPSEAPVTGYM 400 (531)
T ss_pred HHHHHHHHHhhccccCccCceeehhHHHhhhcccccccccCcccccccchhcccceeeeeccccCCceecCCCCCceeec
Confidence 3488999999999999988888999999999999 66777888889999999999999999999999999999999999
Q ss_pred CCcCccccccccCCCCCCCCCccCCcc
Q 037230 133 MYSEWSTCTFRTKDPPRKQEPTKLPDS 159 (815)
Q Consensus 133 ~~sewtkC~~~~~~p~R~~~~~kiP~~ 159 (815)
+.++|..|+..++++.+....+..|..
T Consensus 401 ~gkgiyfa~~~sks~~y~~~~~~k~~~ 427 (531)
T KOG1037|consen 401 FGKGIYFADAASKSANYCVTMKGKPTG 427 (531)
T ss_pred cccceEeeeecccccccccccccCchh
Confidence 999999999999999997333333433
No 38
>KOG0966 consensus ATP-dependent DNA ligase IV [Replication, recombination and repair]
Probab=96.42 E-value=0.0061 Score=72.54 Aligned_cols=91 Identities=24% Similarity=0.381 Sum_probs=68.9
Q ss_pred CCCCCCCCCcEEEEe-eccc-cchHHHHHHHHHcCCEEEeecc-ceeEEEeChHHHhcCCchhHHHHHHcCCcEechhHH
Q 037230 184 GAAVKPFTGMTISLM-GRLS-RTHQYWRTTIEKHGGKVAASPI-GLTCLVASPAERERGGSSKLVEAMERGTRVVSEAWL 260 (815)
Q Consensus 184 ~p~~~~L~g~~~~is-G~l~-~~r~elk~~Ie~~GG~v~~~vs-~~thlI~t~~e~~k~~s~K~~~A~~~gI~IVsed~L 260 (815)
+|-+..|.|+.|++. |+-. .++.++.++|.++||.++-.|. .++++|++-... .+..-..|.+.+.-||...||
T Consensus 628 ~~~s~if~gl~f~Vlsgt~~~~tk~~le~~ivenGG~iv~nv~p~~~~ci~~a~~e---t~~vk~~~~~~~cdVl~p~Wl 704 (881)
T KOG0966|consen 628 AKISNIFDGLEFCVLSGTSETHTKAKLEEIIVENGGKIVQNVGPSDTLCIATAGKE---TTRVKAQAIKRSCDVLKPAWL 704 (881)
T ss_pred cchhhhhcCeeEEEecCCcccccHHHHHHHHHHcCCEEEEcCCCCCcceEEecccc---chHHHHHHHhccCceeeHHHH
Confidence 344788999999985 5544 4579999999999999999999 788887643211 123334455569999999999
Q ss_pred HHHhhhcCCCCCccccc
Q 037230 261 IDSIEKQEAQPLEAYDL 277 (815)
Q Consensus 261 ~d~~~~~~~l~~~~Y~i 277 (815)
.+|+..++.+|..++.+
T Consensus 705 ldcc~~~~l~p~~P~~~ 721 (881)
T KOG0966|consen 705 LDCCKKQRLLPWLPRDL 721 (881)
T ss_pred HHHHhhhhccccccHHH
Confidence 99999998887655443
No 39
>KOG1929 consensus Nucleotide excision repair factor NEF2, RAD4/CUT5 component [Replication, recombination and repair]
Probab=95.43 E-value=0.019 Score=69.97 Aligned_cols=88 Identities=18% Similarity=0.222 Sum_probs=77.1
Q ss_pred CCCCCCcEEEEeeccccchHHHHHHHHHcCCEEEeecc-ceeEEEeChHHHhcCCchhHHHHHHcCCcEechhHHHHHhh
Q 037230 187 VKPFTGMTISLMGRLSRTHQYWRTTIEKHGGKVAASPI-GLTCLVASPAERERGGSSKLVEAMERGTRVVSEAWLIDSIE 265 (815)
Q Consensus 187 ~~~L~g~~~~isG~l~~~r~elk~~Ie~~GG~v~~~vs-~~thlI~t~~e~~k~~s~K~~~A~~~gI~IVsed~L~d~~~ 265 (815)
..||.|++|++++.-...++-|...+..+|+.+..... +.+|||++.+ . .+++..|.+++||||+.+||..|..
T Consensus 491 ~~~~e~~~~~~s~~~~~~~e~ln~~~~~~gas~~~~f~r~~~~l~~~~~----k-~s~~~~~~kw~ip~vT~~wL~e~~r 565 (811)
T KOG1929|consen 491 SQPFENLTISNSQSAEAEREKLNNLANDLGASNVKTFTRKSTTLLTTSA----K-GSKYEIAGKWSIPIVTPDWLYECVR 565 (811)
T ss_pred cccccCceEEeeechHHHHHHHhHhhhhccccccceeeecccEEecccc----c-cchhhhccccCCCccChhHHHhhcc
Confidence 56899999999998777789999999999999999988 7799999973 2 4899999999999999999999998
Q ss_pred hcCCCCCccccccc
Q 037230 266 KQEAQPLEAYDLVT 279 (815)
Q Consensus 266 ~~~~l~~~~Y~i~s 279 (815)
.+..++..-|....
T Consensus 566 q~~~~~~e~~l~~~ 579 (811)
T KOG1929|consen 566 QNKGERNEGFLNGN 579 (811)
T ss_pred ccCcccceeecccc
Confidence 88888877777663
No 40
>KOG2043 consensus Signaling protein SWIFT and related BRCT domain proteins [Transcription; Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.84 E-value=0.038 Score=68.50 Aligned_cols=78 Identities=23% Similarity=0.364 Sum_probs=66.5
Q ss_pred EEEeeccccchHHHHHHHHHcCCEEEeeccceeEEEeChHHHhcCCchhHHHHHHcCCcEechhHHHHHhhhcCCCCCcc
Q 037230 195 ISLMGRLSRTHQYWRTTIEKHGGKVAASPIGLTCLVASPAERERGGSSKLVEAMERGTRVVSEAWLIDSIEKQEAQPLEA 274 (815)
Q Consensus 195 ~~isG~l~~~r~elk~~Ie~~GG~v~~~vs~~thlI~t~~e~~k~~s~K~~~A~~~gI~IVsed~L~d~~~~~~~l~~~~ 274 (815)
+.+++... ..-++..++-+||.+..+.+..||+|+..-. . +.|+-.|...|++||+++||.+|...+..+++.+
T Consensus 662 ~lfs~~~~--~~~~k~~~k~lg~s~~ss~~e~Th~i~~rir---R-T~k~Leai~~G~~ivT~~wL~s~~k~g~~~dek~ 735 (896)
T KOG2043|consen 662 VLFSDKND--GKNYKLAKKFLGGSVASSDSEATHFIADRIR---R-TLKFLEAISSGKPLVTPQWLVSSLKSGEKLDEKP 735 (896)
T ss_pred eeeeeccC--chhhhhHHhhccceeecccccceeeeehhhh---c-cHHHHhhhccCCcccchHHHHHHhhccccccCcc
Confidence 56666653 3458889999999999998899999999532 2 6899999999999999999999999999999999
Q ss_pred cccc
Q 037230 275 YDLV 278 (815)
Q Consensus 275 Y~i~ 278 (815)
|.+-
T Consensus 736 yil~ 739 (896)
T KOG2043|consen 736 YILH 739 (896)
T ss_pred cccc
Confidence 9886
No 41
>KOG3548 consensus DNA damage checkpoint protein RHP9/CRB2/53BP1 [Replication, recombination and repair]
Probab=94.71 E-value=0.032 Score=67.36 Aligned_cols=88 Identities=24% Similarity=0.307 Sum_probs=66.7
Q ss_pred CCCCCcEEEEeeccccchHHHHHHHHHcCCEEEee-------------------cc--c----e-eEEEeChHHHhcCCc
Q 037230 188 KPFTGMTISLMGRLSRTHQYWRTTIEKHGGKVAAS-------------------PI--G----L-TCLVASPAERERGGS 241 (815)
Q Consensus 188 ~~L~g~~~~isG~l~~~r~elk~~Ie~~GG~v~~~-------------------vs--~----~-thlI~t~~e~~k~~s 241 (815)
.+|.||+|+++|.+. +++....-++.+||.+-.+ ++ . + -+|+.+..-.. +
T Consensus 924 niFd~cvF~lTsa~~-sd~~~r~s~e~~gg~vle~gl~~~Fn~p~~g~~~~lr~Ln~~q~~ks~~qalLIsdth~R---t 999 (1176)
T KOG3548|consen 924 NIFDGCVFMLTSANR-SDSASRPSMEKHGGLVLEKGLMNLFNTPFKGGGIVLRQLNSFQERKSNYQALLISDTHYR---T 999 (1176)
T ss_pred chhcceeEEEecccc-chhhhhhhhhccCChhhhccccccccccccCCcchHHhhhHHhhhccccceeEeehhhhH---H
Confidence 689999999999874 4567778888888876432 11 0 1 13333333221 4
Q ss_pred hhHHHHHHcCCcEechhHHHHHhhhcCCCCCccccccc
Q 037230 242 SKLVEAMERGTRVVSEAWLIDSIEKQEAQPLEAYDLVT 279 (815)
Q Consensus 242 ~K~~~A~~~gI~IVsed~L~d~~~~~~~l~~~~Y~i~s 279 (815)
-|+-.|..+|||+|+..||.+|+..++.++..+|+|.+
T Consensus 1000 ~KYLeaLA~giPcVh~~fI~aC~e~nr~Vdy~~YLLps 1037 (1176)
T KOG3548|consen 1000 HKYLEALARGIPCVHNTFIQACGEQNRCVDYTDYLLPS 1037 (1176)
T ss_pred HHHHHHHHcCCCcccHHHHHHHHhccccccchhhcccC
Confidence 78899999999999999999999999999999999974
No 42
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=91.09 E-value=0.1 Score=62.13 Aligned_cols=87 Identities=25% Similarity=0.278 Sum_probs=72.6
Q ss_pred CCCCCCcEEEEeecccc----chHHHHHHHHHcCCEEEeecc-ceeEEEeChHHHhcCCchhHHHHHHcC-CcEechhHH
Q 037230 187 VKPFTGMTISLMGRLSR----THQYWRTTIEKHGGKVAASPI-GLTCLVASPAERERGGSSKLVEAMERG-TRVVSEAWL 260 (815)
Q Consensus 187 ~~~L~g~~~~isG~l~~----~r~elk~~Ie~~GG~v~~~vs-~~thlI~t~~e~~k~~s~K~~~A~~~g-I~IVsed~L 260 (815)
...+.|+.++++|..+. .+.++-.+...+|...+..++ ++||+|+-. .++.|+.+|...+ +.||..+||
T Consensus 439 ~~v~~~~~~vfSg~~P~~~~~~~s~~~~~~~~~g~vs~~~~~~~~th~i~~~-----~gt~k~~~a~~~~~~~Vv~~~wl 513 (635)
T KOG0323|consen 439 TKVLKGSQIVFSGLHPTGSTDESADILGVAQQLGAVSAPDVSDKTTHLIAAN-----AGTKKVYKAVVSGSAKVVNAAWL 513 (635)
T ss_pred hHHhhccceeecccccCcCCcchhhhhhhhhcccceecccccchhhhHHhhc-----cCcceeeccccccceeEechhHH
Confidence 45799999999998762 245666677788988777888 999999886 3578889998865 999999999
Q ss_pred HHHhhhcCCCCCcccccc
Q 037230 261 IDSIEKQEAQPLEAYDLV 278 (815)
Q Consensus 261 ~d~~~~~~~l~~~~Y~i~ 278 (815)
+.|+.++..+.+..|.+.
T Consensus 514 ~~~~e~w~~v~ek~~~l~ 531 (635)
T KOG0323|consen 514 WRSLEKWGKVEEKLEPLD 531 (635)
T ss_pred HHHHHHhcchhccccccc
Confidence 999999999998888876
No 43
>COG5163 NOP7 Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis]
Probab=90.40 E-value=0.36 Score=53.70 Aligned_cols=92 Identities=20% Similarity=0.280 Sum_probs=68.6
Q ss_pred CCCCCcEEEEeeccccchHHHHHHHHHcCCEEEe-----------ecc-ceeEEEeChHHHhcCCchhHHHHHHcCCcEe
Q 037230 188 KPFTGMTISLMGRLSRTHQYWRTTIEKHGGKVAA-----------SPI-GLTCLVASPAERERGGSSKLVEAMERGTRVV 255 (815)
Q Consensus 188 ~~L~g~~~~isG~l~~~r~elk~~Ie~~GG~v~~-----------~vs-~~thlI~t~~e~~k~~s~K~~~A~~~gI~IV 255 (815)
..|+|.+|.++-..+ ++-|.=+|.++||+|.+ .+. .+||-||...-.. . +-.|.--|
T Consensus 349 slFS~f~FyisreVp--~dsLefiilscGG~V~~~p~~~~i~~~~~vD~~vth~i~drp~~~----~-----kvegrtYi 417 (591)
T COG5163 349 SLFSGFKFYISREVP--GDSLEFIILSCGGSVVGSPCEADIHVSEKVDEKVTHQIVDRPVMK----N-----KVEGRTYI 417 (591)
T ss_pred hhhhceEEEEecccc--chHHHHHHHHcCCcccCchhhccCCchhhccchhhhhhccchhhh----h-----hhcceeee
Confidence 469999999987664 57788999999999975 344 6777777764331 1 12577889
Q ss_pred chhHHHHHhhhcCCCCCcccccccCCCCCCCCCCCCC
Q 037230 256 SEAWLIDSIEKQEAQPLEAYDLVTDLAPDSKGIPWDK 292 (815)
Q Consensus 256 sed~L~d~~~~~~~l~~~~Y~i~s~~~~~~~~~~~~k 292 (815)
.++||.||+.++...+...|.++..+ +.-.+||.+
T Consensus 418 QPQw~fDsiNkG~l~~~~~Y~~G~~L--PpHlSPf~~ 452 (591)
T COG5163 418 QPQWLFDSINKGKLACVENYCVGKRL--PPHLSPFAS 452 (591)
T ss_pred chHHHHhhhccccchhhhhccccccC--CCCcCcccc
Confidence 99999999999999999999987422 234567765
No 44
>KOG2481 consensus Protein required for normal rRNA processing [RNA processing and modification]
Probab=88.47 E-value=0.58 Score=53.86 Aligned_cols=81 Identities=22% Similarity=0.343 Sum_probs=63.2
Q ss_pred CCCCCcEEEEeeccccchHHHHHHHHHcCCEEEeec---------c--ceeEEEeChHHHhcCCchhHHHHHHcCCcEec
Q 037230 188 KPFTGMTISLMGRLSRTHQYWRTTIEKHGGKVAASP---------I--GLTCLVASPAERERGGSSKLVEAMERGTRVVS 256 (815)
Q Consensus 188 ~~L~g~~~~isG~l~~~r~elk~~Ie~~GG~v~~~v---------s--~~thlI~t~~e~~k~~s~K~~~A~~~gI~IVs 256 (815)
..|+|++|.+.--. +|+.|.=+|.+.||.|+..- + .+||=|+...... -.=.|-.-|-
T Consensus 326 slF~glkFfl~reV--PresL~fiI~s~GG~V~wd~~~~g~~~~~~d~~ITH~IvDrP~~~---------~~v~gR~YvQ 394 (570)
T KOG2481|consen 326 SLFSGLKFFLNREV--PRESLEFIIRSFGGKVSWDPLGIGATYDESDERITHQIVDRPGQQ---------TSVIGRTYVQ 394 (570)
T ss_pred HHhhcceeeeeccC--chHHHHHHHHHcCCceecCccCCCCcccccccceeeeeecccCcc---------ceeeeeeeec
Confidence 47999999997655 57899999999999999772 2 4577777653111 1124677899
Q ss_pred hhHHHHHhhhcCCCCCccccccc
Q 037230 257 EAWLIDSIEKQEAQPLEAYDLVT 279 (815)
Q Consensus 257 ed~L~d~~~~~~~l~~~~Y~i~s 279 (815)
++|+.||+..+..+|...|.++.
T Consensus 395 PQWvfDsvNar~llpt~~Y~~G~ 417 (570)
T KOG2481|consen 395 PQWVFDSVNARLLLPTEKYFPGK 417 (570)
T ss_pred chhhhhhccchhhccHhhhCCCc
Confidence 99999999999999999999884
No 45
>KOG3524 consensus Predicted guanine nucleotide exchange factor (PEBBLE) [Signal transduction mechanisms]
Probab=85.58 E-value=0.51 Score=56.01 Aligned_cols=75 Identities=13% Similarity=0.242 Sum_probs=62.1
Q ss_pred CCCCCCcEEEEeeccccchHHHHHHHHHcCCEEEeecc-ceeEEEeChHHHhcCCchhHHHHHHcCCcEechhHHHHHhh
Q 037230 187 VKPFTGMTISLMGRLSRTHQYWRTTIEKHGGKVAASPI-GLTCLVASPAERERGGSSKLVEAMERGTRVVSEAWLIDSIE 265 (815)
Q Consensus 187 ~~~L~g~~~~isG~l~~~r~elk~~Ie~~GG~v~~~vs-~~thlI~t~~e~~k~~s~K~~~A~~~gI~IVsed~L~d~~~ 265 (815)
..++.|.+.|++|-.+... ++-.+|..+||.|....+ ++||+|+...+. .|+..|.-. +|++..+|+..+..
T Consensus 116 ~~~m~~vvlcfTg~rkk~e-~lv~lvh~mgg~irkd~nsktthli~n~s~g-----ek~~~a~t~-~~~~rp~wv~~aw~ 188 (850)
T KOG3524|consen 116 CELMKDVVMCFTGERKKKE-ELVDLVHYMGGSIRKDTNSKTTHLIANKVEG-----EKQSIALVG-VPTMRPDWVTEAWK 188 (850)
T ss_pred chhhcCceeeeeccchhhH-HHHHHHHHhcceeEeeeccCceEEEeecccc-----eEEEEEeec-cceechHhhhhhhc
Confidence 3468999999999987654 899999999999998888 999999998543 555666556 99999999999876
Q ss_pred hcC
Q 037230 266 KQE 268 (815)
Q Consensus 266 ~~~ 268 (815)
...
T Consensus 189 ~rn 191 (850)
T KOG3524|consen 189 HRN 191 (850)
T ss_pred Ccc
Confidence 654
No 46
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=79.99 E-value=2.8 Score=31.07 Aligned_cols=32 Identities=19% Similarity=0.415 Sum_probs=28.5
Q ss_pred cCCHHHHHHHHHHhCCCCCCChHHHHHHhhhh
Q 037230 74 QLSAEQMREILELNGQDSSGSDVAVVTKCLDM 105 (815)
Q Consensus 74 ~~~~~~l~~lL~~N~q~~~~~~~~ll~~~aD~ 105 (815)
.++.++|+++|...|-++.|....|++|+.+.
T Consensus 3 ~l~v~eLk~~l~~~gL~~~G~K~~Li~Rl~~~ 34 (35)
T PF02037_consen 3 KLTVAELKEELKERGLSTSGKKAELIERLKEH 34 (35)
T ss_dssp TSHHHHHHHHHHHTTS-STSSHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHCCCCCCCCHHHHHHHHHHh
Confidence 58899999999999999999999999998764
No 47
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=78.75 E-value=3.8 Score=30.20 Aligned_cols=32 Identities=22% Similarity=0.488 Sum_probs=29.5
Q ss_pred cCCHHHHHHHHHHhCCCCCCChHHHHHHhhhh
Q 037230 74 QLSAEQMREILELNGQDSSGSDVAVVTKCLDM 105 (815)
Q Consensus 74 ~~~~~~l~~lL~~N~q~~~~~~~~ll~~~aD~ 105 (815)
.++.++|+++|...|.+++|....|++|+.+.
T Consensus 3 ~l~~~~Lk~~l~~~gl~~~G~K~~Lv~Rl~~~ 34 (35)
T smart00513 3 KLKVSELKDELKKRGLSTSGTKAELVDRLLEA 34 (35)
T ss_pred cCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHh
Confidence 48899999999999999999999999998764
No 48
>PF15633 Tox-ART-HYD1: HYD1 signature containing ADP-ribosyltransferase
Probab=77.75 E-value=1.1 Score=41.06 Aligned_cols=41 Identities=22% Similarity=0.293 Sum_probs=32.1
Q ss_pred eeccCCccchhhhcccCCCCCCCCCCCCCceeeeeeeechhhh
Q 037230 654 LWCGTRSSNLLRHLQKGFLPASCSLPVPGYMFGRAIVCSDAAA 696 (815)
Q Consensus 654 LwHGSr~~N~~gIL~~Gl~iap~~a~~tG~mFGkGIYFAd~~s 696 (815)
|+|=|...++-+|+++|-.......|.. .||.|.||++.+-
T Consensus 1 lyHYTs~~G~n~I~~s~~i~~~a~~p~~--~~~~g~y~t~~ap 41 (96)
T PF15633_consen 1 LYHYTSEKGYNGILESGIIKLKANNPKD--RFGQGQYFTDIAP 41 (96)
T ss_pred CccccchhhhHHhhccceEEeccCCccc--cCCCceEEEecCC
Confidence 5788999999999999965544444454 7999999998763
No 49
>PF13151 DUF3990: Protein of unknown function (DUF3990)
Probab=76.50 E-value=2.9 Score=41.61 Aligned_cols=61 Identities=11% Similarity=0.179 Sum_probs=39.3
Q ss_pred eeeeccCCccchhhhcccCCCCCCCCCCCCCceeeeeeeechhhhhhhcccccCCCCCceEEEEEEEecC
Q 037230 652 VLLWCGTRSSNLLRHLQKGFLPASCSLPVPGYMFGRAIVCSDAAAEAARYGFTAADRPEGFLVLAVASLG 721 (815)
Q Consensus 652 ~lLwHGSr~~N~~gIL~~Gl~iap~~a~~tG~mFGkGIYFAd~~skS~~Yc~~~~~~~~~~mlLceVaLG 721 (815)
|.|+|||... . .+-++.. .....=||+|-|.++...-|..++........+++..-+.-.-
T Consensus 1 M~LYHGS~~~-----i-~~pd~~~---~r~~~DFG~GFY~T~~~~qA~~wA~~~~~~~~~~v~~Y~~~~~ 61 (154)
T PF13151_consen 1 MILYHGSNQI-----I-EKPDLSK---GRPNLDFGKGFYLTTDKEQAKRWAKRKRNGGDPIVNVYEFDED 61 (154)
T ss_pred CEeecCCCcc-----c-cCceecc---CcccCccCceeEcccCHHHHHHHHHhcccCCCCEEEEEEEecc
Confidence 5799999632 1 1222221 1234569999999999999999987653344556655555443
No 50
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=72.92 E-value=1.2 Score=56.78 Aligned_cols=112 Identities=6% Similarity=0.041 Sum_probs=75.8
Q ss_pred cccceeeeEecCC-ccchhh----hhc----CCCceeeeccCCccchhhhcccCCCCCCCCCCCCCceeeeeeeechhhh
Q 037230 626 VSVDNIFVIESNA-QPSLDE----IKK----LPNKVLLWCGTRSSNLLRHLQKGFLPASCSLPVPGYMFGRAIVCSDAAA 696 (815)
Q Consensus 626 ~~I~~If~v~r~~-~~~f~~----~~~----~~N~~lLwHGSr~~N~~gIL~~Gl~iap~~a~~tG~mFGkGIYFAd~~s 696 (815)
..+..++.+.... ++++.. |.. .-++..+||++...| -|-..+|...-. .-++|||.|||||.+++
T Consensus 998 ~~~~r~~~~~~~~~~e~~~~~~~~~~e~~~~~~~~~~~f~~~~~~~--~~~~~~~~~~~~---~~~~~~~~~~~f~~~~~ 1072 (1143)
T KOG4177|consen 998 NVSARFWLVDCRKTREAVTHATQLYNELIFVYMAKFVVFAKSNFPN--EGRLRCFCMTDD---KVDKTLEQQEYFAEVAR 1072 (1143)
T ss_pred hhhhHhhhhhcchhhhhhhHHHHHHHHHHHHHHHHHhhhccCCcch--hhccccccccCC---ccCcchhhHHHHHHhhh
Confidence 3345666776666 655442 221 468999999999888 566678876432 35679999999999999
Q ss_pred hhhcccccCC---------C----CCceEEEEEEEecCCcceeccCCCCcCccCCCCCcceeee
Q 037230 697 EAARYGFTAA---------D----RPEGFLVLAVASLGDQVTELKKPPEDTKSLEDKKLGVKGL 747 (815)
Q Consensus 697 kS~~Yc~~~~---------~----~~~~~mlLceVaLG~~~~e~~~~~~~~~~~p~G~~Sv~g~ 747 (815)
++..|..... . -.-..+++|.|.+|. ..--... +.+ +.|.+|+.+-
T Consensus 1073 ~~d~~v~~~~~~~~~~~~n~~p~~~~~~ql~~~~~~~~~-~~l~~~~---~~~-~~g~~~~~~~ 1131 (1143)
T KOG4177|consen 1073 SRDIEVLGGKGGFAEPSGNDVPLTKAGQQLSFCFVPFLE-NRLAFSV---KKR-HAGRISFMAE 1131 (1143)
T ss_pred hhhhhhhccccceecccCccccceeccceeEEeeehhhh-hhhHHHH---Hhh-cCCcceeecc
Confidence 9999875421 1 123689999999998 3322111 233 4499999764
No 51
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=72.86 E-value=2.7 Score=52.55 Aligned_cols=74 Identities=16% Similarity=0.127 Sum_probs=63.4
Q ss_pred CCCCCCcEEEEeeccc-cchHHHHHHHHHcCCEEEeecc-ceeEEEeChHHHhcCCchhHHHHHHcCCcEechhHHHHHh
Q 037230 187 VKPFTGMTISLMGRLS-RTHQYWRTTIEKHGGKVAASPI-GLTCLVASPAERERGGSSKLVEAMERGTRVVSEAWLIDSI 264 (815)
Q Consensus 187 ~~~L~g~~~~isG~l~-~~r~elk~~Ie~~GG~v~~~vs-~~thlI~t~~e~~k~~s~K~~~A~~~gI~IVsed~L~d~~ 264 (815)
+.++.|++|+.+|.+. ..+..+...++++||++..+++ ++.+++.+.+ +++.++..+.++.|++..++ +..++
T Consensus 171 ~~~~s~~~~~~tg~ld~~~~~s~~~~~k~~~~~~~~~ls~kt~~s~~~~e----~~~~kle~~~~~~~~~~~e~-~~~~~ 245 (871)
T KOG1968|consen 171 SKPLSGIKFTPTGVLDDIGTGSAEPSLKEFGASKTESLSDKTVESCLGDE----AIAKKLEKIKELEIPVLLEE-RKELF 245 (871)
T ss_pred cCCCcCceeeecCcccccccccchhhhhhccccccccCCCCcceeecCcc----ccchhhcccccccccccchh-hhhhh
Confidence 5689999999999998 6788999999999999999999 8887777764 33689999999999999999 65554
Q ss_pred h
Q 037230 265 E 265 (815)
Q Consensus 265 ~ 265 (815)
.
T Consensus 246 ~ 246 (871)
T KOG1968|consen 246 A 246 (871)
T ss_pred c
Confidence 3
No 52
>PF01396 zf-C4_Topoisom: Topoisomerase DNA binding C4 zinc finger; InterPro: IPR013498 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA. This entry represents the zinc-finger domain found in type IA topoisomerases, including bacterial and archaeal topoisomerase I and III enzymes, and in eukaryotic topoisomerase III enzymes. Escherichia coli topoisomerase I proteins contain five copies of a zinc-ribbon-like domain at their C terminus, two of which have lost their cysteine residues and are therefore probably not able to bind zinc []. This domain is still considered to be a member of the zinc-ribbon superfamily despite not being able to bind zinc. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0006265 DNA topological change, 0005694 chromosome
Probab=72.01 E-value=3.4 Score=31.48 Aligned_cols=31 Identities=29% Similarity=0.731 Sum_probs=22.6
Q ss_pred CCCCCCCCeeEEeC----ceeEeecCCcCccccccccCC
Q 037230 112 DKCPVCNGNLEFDG----KRYSCKGMYSEWSTCTFRTKD 146 (815)
Q Consensus 112 ~~Cp~C~g~l~~~~----~~Y~C~G~~sewtkC~~~~~~ 146 (815)
..||.|++.|+... .-|-|++| -.|.|+...
T Consensus 2 ~~CP~Cg~~lv~r~~k~g~F~~Cs~y----P~C~~~~~~ 36 (39)
T PF01396_consen 2 EKCPKCGGPLVLRRGKKGKFLGCSNY----PECKYTEPL 36 (39)
T ss_pred cCCCCCCceeEEEECCCCCEEECCCC----CCcCCeEeC
Confidence 57999999888874 34678776 578876543
No 53
>smart00778 Prim_Zn_Ribbon Zinc-binding domain of primase-helicase. This region represents the zinc binding domain. It is found in the N-terminal region of the bacteriophage P4 alpha protein, which is a multifunctional protein with origin recognition, helicase and primase activities.
Probab=71.85 E-value=2.8 Score=31.67 Aligned_cols=22 Identities=32% Similarity=0.881 Sum_probs=17.1
Q ss_pred CCCCCCCCCC--eeEEeC----ceeEee
Q 037230 110 PLDKCPVCNG--NLEFDG----KRYSCK 131 (815)
Q Consensus 110 ~l~~Cp~C~g--~l~~~~----~~Y~C~ 131 (815)
.-.|||.|+| .+.|+- +.|+|.
T Consensus 2 ~~~pCP~CGG~DrFr~~d~~g~G~~~C~ 29 (37)
T smart00778 2 RHGPCPNCGGSDRFRFDDKDGRGTWFCS 29 (37)
T ss_pred CccCCCCCCCccccccccCCCCcCEEeC
Confidence 4579999965 677775 678887
No 54
>COG2824 PhnA Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=68.96 E-value=3.9 Score=37.82 Aligned_cols=30 Identities=30% Similarity=0.837 Sum_probs=24.4
Q ss_pred CCCCCCCCCCeeEEe-CceeEeecCCcCccc
Q 037230 110 PLDKCPVCNGNLEFD-GKRYSCKGMYSEWST 139 (815)
Q Consensus 110 ~l~~Cp~C~g~l~~~-~~~Y~C~G~~sewtk 139 (815)
.+++||.|+.-..|. +..|+|.+-.-||+.
T Consensus 2 ~lp~cp~c~sEytYed~~~~~cpec~~ew~~ 32 (112)
T COG2824 2 SLPPCPKCNSEYTYEDGGQLICPECAHEWNE 32 (112)
T ss_pred CCCCCCccCCceEEecCceEeCchhcccccc
Confidence 378999998777776 478999998888864
No 55
>PRK00420 hypothetical protein; Validated
Probab=68.70 E-value=3.6 Score=38.79 Aligned_cols=40 Identities=25% Similarity=0.437 Sum_probs=30.5
Q ss_pred ChHHHHHHhhhhhhcCCC---CCCCCCCCeeEE-eCceeEeecC
Q 037230 94 SDVAVVTKCLDMLFYGPL---DKCPVCNGNLEF-DGKRYSCKGM 133 (815)
Q Consensus 94 ~~~~ll~~~aD~~~fG~l---~~Cp~C~g~l~~-~~~~Y~C~G~ 133 (815)
+++.+..+.|+.|+=|+- ..||.|+..|.= +.+.++|..-
T Consensus 3 ~~~~~~k~~a~~Ll~Ga~ml~~~CP~Cg~pLf~lk~g~~~Cp~C 46 (112)
T PRK00420 3 ESEDIVKKAAELLLKGAKMLSKHCPVCGLPLFELKDGEVVCPVH 46 (112)
T ss_pred ccHHHHHHHHHHHHhHHHHccCCCCCCCCcceecCCCceECCCC
Confidence 345678888888888875 899999876543 6688999864
No 56
>PRK08665 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=68.70 E-value=7.4 Score=48.29 Aligned_cols=28 Identities=29% Similarity=0.703 Sum_probs=24.4
Q ss_pred CCCCCCCCeeEEeCceeEeecCCcCccccc
Q 037230 112 DKCPVCNGNLEFDGKRYSCKGMYSEWSTCT 141 (815)
Q Consensus 112 ~~Cp~C~g~l~~~~~~Y~C~G~~sewtkC~ 141 (815)
..||+|+..|+|.+|.+.|.. =.|+||.
T Consensus 725 ~~Cp~Cg~~l~~~~GC~~C~~--CG~skC~ 752 (752)
T PRK08665 725 GACPECGSILEHEEGCVVCHS--CGYSKCG 752 (752)
T ss_pred CCCCCCCcccEECCCCCcCCC--CCCCCCC
Confidence 469999989999999999986 4889994
No 57
>KOG3524 consensus Predicted guanine nucleotide exchange factor (PEBBLE) [Signal transduction mechanisms]
Probab=65.97 E-value=3.7 Score=49.14 Aligned_cols=86 Identities=22% Similarity=0.244 Sum_probs=63.8
Q ss_pred CCCCCcEEEEeeccccchHHHHHHHHHcCCEEEeeccceeEEEeChHHHhcCCchhHHHHHHcCCcEechhHHHHHhhhc
Q 037230 188 KPFTGMTISLMGRLSRTHQYWRTTIEKHGGKVAASPIGLTCLVASPAERERGGSSKLVEAMERGTRVVSEAWLIDSIEKQ 267 (815)
Q Consensus 188 ~~L~g~~~~isG~l~~~r~elk~~Ie~~GG~v~~~vs~~thlI~t~~e~~k~~s~K~~~A~~~gI~IVsed~L~d~~~~~ 267 (815)
++|.|+.|++-|--....+.+-...++.||+..-.-..|||||++++... -.-.|......+|-++|++=.+.++
T Consensus 209 ~~feg~~~~f~gF~~ee~~~m~~sle~~gg~~a~~d~~cthvvv~e~~~~-----~~p~~~s~~~~~vk~ewfw~siq~g 283 (850)
T KOG3524|consen 209 GVFEGLSLFFHGFKQEEIDDMLRSLENTGGKLAPSDTLCTHVVVNEDNDE-----VEPLAVSSNQVHVKKEWFWVSIQRG 283 (850)
T ss_pred ccccCCeEeecCCcHHHHHHHHHHHHhcCCcccCCCCCceeEeecCCccc-----cccccccccceeecccceEEEEecc
Confidence 56999999999987666777888889999999983338999999986332 1123444667899999999888777
Q ss_pred CCCCCcccccc
Q 037230 268 EAQPLEAYDLV 278 (815)
Q Consensus 268 ~~l~~~~Y~i~ 278 (815)
...-+..|...
T Consensus 284 ~~a~e~~yl~~ 294 (850)
T KOG3524|consen 284 CCAIEDNYLLP 294 (850)
T ss_pred hhccccceecc
Confidence 55545555544
No 58
>PF08273 Prim_Zn_Ribbon: Zinc-binding domain of primase-helicase; InterPro: IPR013237 This entry is represented by bacteriophage T7 Gp4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a zinc binding domain found in the N-terminal region of the bacteriophage T7 Gp4 and P4 alpha protein. P4 is a multifunctional protein with origin recognition, helicase and primase activities [, , ].; GO: 0003896 DNA primase activity, 0004386 helicase activity, 0008270 zinc ion binding; PDB: 1NUI_B.
Probab=65.05 E-value=2.7 Score=32.31 Aligned_cols=22 Identities=32% Similarity=1.014 Sum_probs=12.7
Q ss_pred CCCCCCCCC--eeE-EeC----ceeEeec
Q 037230 111 LDKCPVCNG--NLE-FDG----KRYSCKG 132 (815)
Q Consensus 111 l~~Cp~C~g--~l~-~~~----~~Y~C~G 132 (815)
-.|||.|+| .+. |+- +.|.|..
T Consensus 3 h~pCP~CGG~DrFri~~d~~~~G~~~C~~ 31 (40)
T PF08273_consen 3 HGPCPICGGKDRFRIFDDKDGRGTWICRQ 31 (40)
T ss_dssp EE--TTTT-TTTEEEETT----S-EEETT
T ss_pred CCCCCCCcCccccccCcCcccCCCEECCC
Confidence 469999955 565 765 7888853
No 59
>PRK10220 hypothetical protein; Provisional
Probab=64.96 E-value=5.5 Score=37.13 Aligned_cols=31 Identities=29% Similarity=0.813 Sum_probs=25.0
Q ss_pred CCCCCCCCCCeeEEe-CceeEeecCCcCcccc
Q 037230 110 PLDKCPVCNGNLEFD-GKRYSCKGMYSEWSTC 140 (815)
Q Consensus 110 ~l~~Cp~C~g~l~~~-~~~Y~C~G~~sewtkC 140 (815)
.+++||.|+....|. +..|.|.----||+.=
T Consensus 2 ~lP~CP~C~seytY~d~~~~vCpeC~hEW~~~ 33 (111)
T PRK10220 2 SLPHCPKCNSEYTYEDNGMYICPECAHEWNDA 33 (111)
T ss_pred CCCcCCCCCCcceEcCCCeEECCcccCcCCcc
Confidence 369999998877776 4789999888899654
No 60
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=64.27 E-value=6.4 Score=29.52 Aligned_cols=22 Identities=36% Similarity=0.948 Sum_probs=15.3
Q ss_pred CCCCCCCCCCCeeEEeC-ceeEe
Q 037230 109 GPLDKCPVCNGNLEFDG-KRYSC 130 (815)
Q Consensus 109 G~l~~Cp~C~g~l~~~~-~~Y~C 130 (815)
|...+|+.|+..+.+.. |.|+|
T Consensus 6 ~~~~~C~~C~~~~~~~~dG~~yC 28 (36)
T PF11781_consen 6 GPNEPCPVCGSRWFYSDDGFYYC 28 (36)
T ss_pred cCCCcCCCCCCeEeEccCCEEEh
Confidence 34456999977744433 78999
No 61
>PF03119 DNA_ligase_ZBD: NAD-dependent DNA ligase C4 zinc finger domain; InterPro: IPR004149 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in NAD-dependent DNA ligases. DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This domain is a small zinc binding motif that is presumably DNA binding. It is found only in NAD-dependent DNA ligases. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 1DGS_A 1V9P_B 2OWO_A.
Probab=63.99 E-value=6.1 Score=27.92 Aligned_cols=21 Identities=29% Similarity=0.675 Sum_probs=11.9
Q ss_pred CCCCCCCeeEEeC--ceeEeecC
Q 037230 113 KCPVCNGNLEFDG--KRYSCKGM 133 (815)
Q Consensus 113 ~Cp~C~g~l~~~~--~~Y~C~G~ 133 (815)
.||.|+..|+... -.|+|++.
T Consensus 1 ~CP~C~s~l~~~~~ev~~~C~N~ 23 (28)
T PF03119_consen 1 TCPVCGSKLVREEGEVDIRCPNP 23 (28)
T ss_dssp B-TTT--BEEE-CCTTCEEE--C
T ss_pred CcCCCCCEeEcCCCCEeEECCCC
Confidence 4999999888665 47999986
No 62
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=60.58 E-value=7.1 Score=36.39 Aligned_cols=31 Identities=29% Similarity=0.792 Sum_probs=24.6
Q ss_pred CCCCCCCCCeeEEe-CceeEeecCCcCccccc
Q 037230 111 LDKCPVCNGNLEFD-GKRYSCKGMYSEWSTCT 141 (815)
Q Consensus 111 l~~Cp~C~g~l~~~-~~~Y~C~G~~sewtkC~ 141 (815)
+++||.|+....|. +..|.|.----||..=.
T Consensus 2 lp~CP~C~seytY~dg~~~iCpeC~~EW~~~~ 33 (109)
T TIGR00686 2 LPPCPKCNSEYTYHDGTQLICPSCLYEWNENE 33 (109)
T ss_pred CCcCCcCCCcceEecCCeeECccccccccccc
Confidence 68999998766666 57899998878886543
No 63
>PRK14724 DNA topoisomerase III; Provisional
Probab=57.30 E-value=7.7 Score=49.60 Aligned_cols=33 Identities=30% Similarity=0.742 Sum_probs=22.8
Q ss_pred CCCCCCCCCeeEEeCceeEeecCCc---Ccc-ccccc
Q 037230 111 LDKCPVCNGNLEFDGKRYSCKGMYS---EWS-TCTFR 143 (815)
Q Consensus 111 l~~Cp~C~g~l~~~~~~Y~C~G~~s---ewt-kC~~~ 143 (815)
+++||.|++.++-.+..|.|.+|.. .+. .|.|+
T Consensus 755 ~g~CPkCg~~v~e~gk~y~Cs~~~~~~~~~~~~C~f~ 791 (987)
T PRK14724 755 LGPCPKCGAPVFEHGSNYVCEKSVPTLAQPTPSCTFK 791 (987)
T ss_pred ccCCCCCCCceEeecceEEcCCCcccccCCCCCCCce
Confidence 5899999776554566799999832 121 38765
No 64
>PRK08173 DNA topoisomerase III; Validated
Probab=57.08 E-value=8.6 Score=48.49 Aligned_cols=35 Identities=34% Similarity=0.788 Sum_probs=25.0
Q ss_pred CCCCCCCCCCeeEEeCceeEeecCCcCcccccccc
Q 037230 110 PLDKCPVCNGNLEFDGKRYSCKGMYSEWSTCTFRT 144 (815)
Q Consensus 110 ~l~~Cp~C~g~l~~~~~~Y~C~G~~sewtkC~~~~ 144 (815)
.+++||.|++.++-.+..|.|.+|..+=..|.|+.
T Consensus 725 ~~g~CPkCg~~v~e~~k~y~Cs~~~~~~~~C~f~i 759 (862)
T PRK08173 725 PVGACPKCGGRVFEHGMSYVCEKSVGPPKTCDFRS 759 (862)
T ss_pred cccCCCCCCCeeEeeceEEEeCCCcCCCCCCCeee
Confidence 36899999776554556799999863323588764
No 65
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=50.95 E-value=14 Score=35.70 Aligned_cols=43 Identities=26% Similarity=0.418 Sum_probs=32.7
Q ss_pred CCCCChHHHHHHhhhhhhcCCC---CCCCCCCCeeEEeCceeEeec
Q 037230 90 DSSGSDVAVVTKCLDMLFYGPL---DKCPVCNGNLEFDGKRYSCKG 132 (815)
Q Consensus 90 ~~~~~~~~ll~~~aD~~~fG~l---~~Cp~C~g~l~~~~~~Y~C~G 132 (815)
...+.+..-...+|+.|+-||- ..||.|+-.|+=..|.-+|.-
T Consensus 4 em~~~~~i~~k~iA~lLl~GAkML~~hCp~Cg~PLF~KdG~v~CPv 49 (131)
T COG1645 4 EMIGDDDIKVKKIAELLLQGAKMLAKHCPKCGTPLFRKDGEVFCPV 49 (131)
T ss_pred cccCcchhhHHHHHHHHHhhhHHHHhhCcccCCcceeeCCeEECCC
Confidence 4455655666889999999997 899999886655557788974
No 66
>PRK08173 DNA topoisomerase III; Validated
Probab=50.35 E-value=8.4 Score=48.55 Aligned_cols=26 Identities=31% Similarity=0.919 Sum_probs=20.7
Q ss_pred CCCCCCCCeeEEeCceeEeecCCcCcccccccc
Q 037230 112 DKCPVCNGNLEFDGKRYSCKGMYSEWSTCTFRT 144 (815)
Q Consensus 112 ~~Cp~C~g~l~~~~~~Y~C~G~~sewtkC~~~~ 144 (815)
++||.|++.++..+..|.|++ |.|..
T Consensus 625 ~~CP~Cg~~~~~~~~~~~Cs~-------C~f~~ 650 (862)
T PRK08173 625 TPCPNCGGVVKENYRRFACTK-------CDFSI 650 (862)
T ss_pred ccCCcccccccccCceeEcCC-------CCccc
Confidence 689999887765666799998 88753
No 67
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family. Restriction alleviation proteins provide a countermeasure to host cell restriction enzyme defense against foreign DNA such as phage or plasmids. This family consists of homologs to the phage antirestriction protein Lar, and most members belong to phage genomes or prophage regions of bacterial genomes.
Probab=49.07 E-value=11 Score=30.45 Aligned_cols=10 Identities=50% Similarity=1.374 Sum_probs=8.4
Q ss_pred CCCCCCCCCe
Q 037230 111 LDKCPVCNGN 120 (815)
Q Consensus 111 l~~Cp~C~g~ 120 (815)
|.|||-|+|+
T Consensus 1 LkPCPfCGg~ 10 (53)
T TIGR03655 1 LKPCPFCGGA 10 (53)
T ss_pred CCCCCCCCCc
Confidence 6899999764
No 68
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=48.45 E-value=7.5 Score=39.73 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=20.6
Q ss_pred eeeeccCCccchhhhcccCCCCC
Q 037230 652 VLLWCGTRSSNLLRHLQKGFLPA 674 (815)
Q Consensus 652 ~lLwHGSr~~N~~gIL~~Gl~ia 674 (815)
..|||||...+|.+|+.+||+..
T Consensus 95 ~~lyHGT~~~~~~~I~~~GL~pm 117 (179)
T PRK00819 95 AVLYHGTSSEELDSILEEGLKPM 117 (179)
T ss_pred ceeEeCCCHHHHHHHHHhCCCcc
Confidence 48999999999999999998753
No 69
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=46.94 E-value=26 Score=42.55 Aligned_cols=85 Identities=18% Similarity=0.237 Sum_probs=60.0
Q ss_pred cEEEEeeccccchHHHHHHHHHcCCEEEeecc-ceeEEEeChHHHhc-CCchhHHHHHHcCCcEechhHHHHHhhhcCCC
Q 037230 193 MTISLMGRLSRTHQYWRTTIEKHGGKVAASPI-GLTCLVASPAERER-GGSSKLVEAMERGTRVVSEAWLIDSIEKQEAQ 270 (815)
Q Consensus 193 ~~~~isG~l~~~r~elk~~Ie~~GG~v~~~vs-~~thlI~t~~e~~k-~~s~K~~~A~~~gI~IVsed~L~d~~~~~~~l 270 (815)
++.+.+|..+....-+.+.... +++.... -+||+|++-++--+ ..+.|+..+.-.|--|++-+|+..|+...+.+
T Consensus 479 ~~~~~s~l~p~ek~~v~~~a~~---t~~k~~~~~~thvi~~~~~~g~c~rTlk~~~gil~gkwi~~~~w~~~s~k~~~~~ 555 (684)
T KOG4362|consen 479 LVLLVSGLTPSEKQLVEKFAVD---TISKFWIEPVTHVIASTDLEGACLRTLKVLMGILRGKWILSYDWVLASLKLRKWV 555 (684)
T ss_pred eeeeeccCCcchHHHHHHHHHH---HHhhccCCCceeeeeecccccchhhhHHHHHHhhcCceeeeHHHHHHHHHhcCCC
Confidence 3445556655444444444444 4444445 78999998653211 11578888888999999999999999999999
Q ss_pred CCcccccccC
Q 037230 271 PLEAYDLVTD 280 (815)
Q Consensus 271 ~~~~Y~i~s~ 280 (815)
++.+|-|..+
T Consensus 556 ~eepfEl~~d 565 (684)
T KOG4362|consen 556 SEEPFELQID 565 (684)
T ss_pred CCCCeeEeec
Confidence 9999998754
No 70
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=46.22 E-value=11 Score=43.24 Aligned_cols=39 Identities=28% Similarity=0.767 Sum_probs=30.9
Q ss_pred CCCCCCCCeeEEeCc-eeEeecCCcCccccccccCCCCCCCCCccCCcccC
Q 037230 112 DKCPVCNGNLEFDGK-RYSCKGMYSEWSTCTFRTKDPPRKQEPTKLPDSVL 161 (815)
Q Consensus 112 ~~Cp~C~g~l~~~~~-~Y~C~G~~sewtkC~~~~~~p~R~~~~~kiP~~~~ 161 (815)
+.||.|++.+.-.|. +|+|. ||.+...+..+. .+|.+|.
T Consensus 351 p~Cp~Cg~~m~S~G~~g~rC~-------kCg~~~~~~~~~----~v~r~l~ 390 (421)
T COG1571 351 PVCPRCGGRMKSAGRNGFRCK-------KCGTRARETLIK----EVPRDLE 390 (421)
T ss_pred CCCCccCCchhhcCCCCcccc-------cccccCCccccc----ccccccC
Confidence 689999999999885 89995 788877666553 6677765
No 71
>KOG3548 consensus DNA damage checkpoint protein RHP9/CRB2/53BP1 [Replication, recombination and repair]
Probab=44.89 E-value=37 Score=42.42 Aligned_cols=77 Identities=19% Similarity=0.199 Sum_probs=48.0
Q ss_pred CCCCcEEEEeeccccchHHHHHHHHHcCCEEEeec----------c--ceeEEEeChHHHhcCCchhHHHHHHcCCcEec
Q 037230 189 PFTGMTISLMGRLSRTHQYWRTTIEKHGGKVAASP----------I--GLTCLVASPAERERGGSSKLVEAMERGTRVVS 256 (815)
Q Consensus 189 ~L~g~~~~isG~l~~~r~elk~~Ie~~GG~v~~~v----------s--~~thlI~t~~e~~k~~s~K~~~A~~~gI~IVs 256 (815)
+|.+..|.+.|.- .+--+++..|.+.||.-+..+ . .-+.+++.+. + +.+-|+-|.+++.|+|+
T Consensus 1070 ~l~~~~v~q~gp~-~~f~e~~~e~le~G~aa~vd~~hada~~~D~~l~~fdvvl~d~~-~---~~svmk~ad~l~~pvvs 1144 (1176)
T KOG3548|consen 1070 TLSAREVTQTGPG-GTFIEIWKEILELGGAAVVDGYHADAETLDETLLKFDVVLVDGT-F---RDSVMKYADTLGAPVVS 1144 (1176)
T ss_pred cccceeEEEecCC-cchHHHHHHHHHhhchheecccccccccccccccceeEEEecCc-c---HHHHHHHHHHhCCCccC
Confidence 3444444444432 123566677777888876544 1 1222333321 1 14678899999999999
Q ss_pred hhHHHHHhhhcCCC
Q 037230 257 EAWLIDSIEKQEAQ 270 (815)
Q Consensus 257 ed~L~d~~~~~~~l 270 (815)
.+|+.+|+-.+..+
T Consensus 1145 ~EWvIQtiI~~~~i 1158 (1176)
T KOG3548|consen 1145 SEWVIQTIILGKAI 1158 (1176)
T ss_pred hhHhheeeeccccC
Confidence 99999998776654
No 72
>PRK14724 DNA topoisomerase III; Provisional
Probab=41.57 E-value=16 Score=46.88 Aligned_cols=33 Identities=30% Similarity=0.735 Sum_probs=23.0
Q ss_pred CCCCCCCCeeEEeCceeEeecCCcCcccccccc
Q 037230 112 DKCPVCNGNLEFDGKRYSCKGMYSEWSTCTFRT 144 (815)
Q Consensus 112 ~~Cp~C~g~l~~~~~~Y~C~G~~sewtkC~~~~ 144 (815)
.+||.|++.+...+..|.|+|+--+=..|.|+.
T Consensus 644 ~~CP~Cg~~~~~~~~~~~Cs~~~~~~~~C~f~~ 676 (987)
T PRK14724 644 TPCPNCGGVVKENYRRYACTGANGAGEGCGFSF 676 (987)
T ss_pred ccCCcccccccccCceeecCCCcCCCCCCCccc
Confidence 689999888766667799999411112498764
No 73
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=39.20 E-value=21 Score=25.81 Aligned_cols=27 Identities=37% Similarity=0.848 Sum_probs=14.2
Q ss_pred CCCCCCCCCeeE-EeCceeEeecCCcCc
Q 037230 111 LDKCPVCNGNLE-FDGKRYSCKGMYSEW 137 (815)
Q Consensus 111 l~~Cp~C~g~l~-~~~~~Y~C~G~~sew 137 (815)
+++||.|+.... .++..|.|.-=..||
T Consensus 2 ~p~Cp~C~se~~y~D~~~~vCp~C~~ew 29 (30)
T PF08274_consen 2 LPKCPLCGSEYTYEDGELLVCPECGHEW 29 (30)
T ss_dssp S---TTT-----EE-SSSEEETTTTEEE
T ss_pred CCCCCCCCCcceeccCCEEeCCcccccC
Confidence 689999965433 556789998766666
No 74
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=39.07 E-value=29 Score=26.75 Aligned_cols=19 Identities=37% Similarity=0.912 Sum_probs=15.2
Q ss_pred CCCCCC-CeeEEeC--ceeEee
Q 037230 113 KCPVCN-GNLEFDG--KRYSCK 131 (815)
Q Consensus 113 ~Cp~C~-g~l~~~~--~~Y~C~ 131 (815)
.||.|+ ..++++. +.+.|+
T Consensus 2 ~Cp~Cg~~~~~~D~~~g~~vC~ 23 (43)
T PF08271_consen 2 KCPNCGSKEIVFDPERGELVCP 23 (43)
T ss_dssp SBTTTSSSEEEEETTTTEEEET
T ss_pred CCcCCcCCceEEcCCCCeEECC
Confidence 599995 4688884 789997
No 75
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=35.35 E-value=19 Score=35.59 Aligned_cols=64 Identities=20% Similarity=0.276 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHHHHHh--cCCHHHHHHHHHHhCC----CCCCChHHHHHHhhhhhh---cCCCCCCCCCCCe
Q 037230 57 SGDVTAEFEEFCKSIEG--QLSAEQMREILELNGQ----DSSGSDVAVVTKCLDMLF---YGPLDKCPVCNGN 120 (815)
Q Consensus 57 ~k~q~~~lw~~~d~l~~--~~~~~~l~~lL~~N~q----~~~~~~~~ll~~~aD~~~---fG~l~~Cp~C~g~ 120 (815)
+.--.+.+|.---.|-+ .+--.+|.+=|+.++. +++|.-.-+=..|.=-+. -+.++|||.|++.
T Consensus 67 ~~lie~slw~~L~~ItDkTqvEw~el~~d~~h~g~Y~sGE~~g~G~l~C~~Cg~~~~~~~~~~l~~Cp~C~~~ 139 (146)
T PF07295_consen 67 LQLIEESLWDELSSITDKTQVEWAELAQDLEHHGVYHSGEVVGPGTLVCENCGHEVELTHPERLPPCPKCGHT 139 (146)
T ss_pred HHHHHHHHHHHHHhhhchhHHHHHHHHHHHHhcCCeecCcEecCceEecccCCCEEEecCCCcCCCCCCCCCC
Confidence 44445566665544432 1223445555666663 233433333344443333 3789999999653
No 76
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=34.81 E-value=56 Score=29.56 Aligned_cols=63 Identities=14% Similarity=0.199 Sum_probs=39.3
Q ss_pred EEEeeccccchHHHHHHHHHcCCEEEee------------cc-c---eeEEEeChHHHhcCCchhH-HHHHHcCCcEech
Q 037230 195 ISLMGRLSRTHQYWRTTIEKHGGKVAAS------------PI-G---LTCLVASPAERERGGSSKL-VEAMERGTRVVSE 257 (815)
Q Consensus 195 ~~isG~l~~~r~elk~~Ie~~GG~v~~~------------vs-~---~thlI~t~~e~~k~~s~K~-~~A~~~gI~IVse 257 (815)
|++.|-.......+++.+++.||++... +. . +++||+--.-+.=....++ +.|++.+||++..
T Consensus 2 vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 2 VLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYS 81 (97)
T ss_pred EEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEE
Confidence 5677776666789999999999998755 33 3 3766654432210001223 3455678888854
No 77
>KOG0966 consensus ATP-dependent DNA ligase IV [Replication, recombination and repair]
Probab=33.61 E-value=55 Score=40.36 Aligned_cols=85 Identities=18% Similarity=0.220 Sum_probs=51.7
Q ss_pred CCCCcEEEE--eeccccchHHHHHH-HHHcCCEEEee------cc-ceeEEEeChH-HHhcCCchhHHHHHHcCC--cEe
Q 037230 189 PFTGMTISL--MGRLSRTHQYWRTT-IEKHGGKVAAS------PI-GLTCLVASPA-ERERGGSSKLVEAMERGT--RVV 255 (815)
Q Consensus 189 ~L~g~~~~i--sG~l~~~r~elk~~-Ie~~GG~v~~~------vs-~~thlI~t~~-e~~k~~s~K~~~A~~~gI--~IV 255 (815)
+|..++++. .+.++. -+.+..+ ++.+||.++.. +. +.||+|+..- +... ..+..+|.++.+ +||
T Consensus 784 ~~~~~~~f~~~~~~~~s-e~~~~~l~~k~~g~~i~~~~~~~~~~~~~~t~~v~~~i~~~h~--~~~~~~~~~lt~~rkv~ 860 (881)
T KOG0966|consen 784 FLSSLRMFYVLRRKLSS-EEVIIELKLKNFGGRITDAQSECNNIGAKYTHCVLRCIDEDHE--KIKEQKKASLTIKRKVV 860 (881)
T ss_pred ccccceeeecccccccH-HHHHHHHHHHHhcceeeeccchhhhcccceeeeeeeecchHHH--HHHHHHHHHhccccccc
Confidence 455555443 345543 3444444 44559999853 12 5688887721 1111 123344444444 699
Q ss_pred chhHHHHHhhhcCCCCCcccc
Q 037230 256 SEAWLIDSIEKQEAQPLEAYD 276 (815)
Q Consensus 256 sed~L~d~~~~~~~l~~~~Y~ 276 (815)
.+.|+.+|+.+...+|+..|.
T Consensus 861 ~~~wv~~s~~~~~~~~e~~~~ 881 (881)
T KOG0966|consen 861 APSWVDHSINENCLLPEEDFP 881 (881)
T ss_pred CHHHHHHhhcccccCccccCC
Confidence 999999999999999988763
No 78
>PRK10445 endonuclease VIII; Provisional
Probab=32.36 E-value=29 Score=37.54 Aligned_cols=28 Identities=25% Similarity=0.625 Sum_probs=20.7
Q ss_pred hhhcCC-CCCCCCCCCeeE---EeC-ceeEeec
Q 037230 105 MLFYGP-LDKCPVCNGNLE---FDG-KRYSCKG 132 (815)
Q Consensus 105 ~~~fG~-l~~Cp~C~g~l~---~~~-~~Y~C~G 132 (815)
..+||+ -.+||.|++.+. +.+ +.|+|..
T Consensus 228 ~~Vy~r~g~~Cp~Cg~~I~~~~~~gR~t~~CP~ 260 (263)
T PRK10445 228 FKVFHRDGEACERCGGIIEKTTLSSRPFYWCPG 260 (263)
T ss_pred EEEeCCCCCCCCCCCCEeEEEEECCCCcEECCC
Confidence 467886 789999987544 445 6899973
No 79
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=32.12 E-value=33 Score=34.51 Aligned_cols=33 Identities=24% Similarity=0.350 Sum_probs=22.5
Q ss_pred CChHHHHHHhhhhhhcCCCC----CCCCCCCeeEEeC
Q 037230 93 GSDVAVVTKCLDMLFYGPLD----KCPVCNGNLEFDG 125 (815)
Q Consensus 93 ~~~~~ll~~~aD~~~fG~l~----~Cp~C~g~l~~~~ 125 (815)
+.+.++++.++=..+++.+. .||.|||.|+.-+
T Consensus 75 s~~~Ql~e~~~~~~l~~~~~~e~~RCp~CN~~L~~vs 111 (165)
T COG1656 75 SIEEQLAEFLARLGLKPRLFPEFSRCPECNGELEKVS 111 (165)
T ss_pred CHHHHHHHHHHHhccchhcccccccCcccCCEeccCc
Confidence 34555666666556666444 4999999988765
No 80
>cd01436 Dipth_tox_like Mono-ADP-ribosylating toxins catalyze the transfer of ADP_ribose from NAD+ to eukaryotic Elongation Factor 2, halting protein synthesis. A single molecule of delivered toxin is sufficient to kill a cell. These toxins share mono-ADP-ribosylating activity with a variety of bacterial toxins, such as cholera toxin and pertussis toxin. The structural core is homologous to the poly-ADP ribosylating enzymes such as the PARP enzymes and Tankyrase. Diphtheria toxin is encoded by a lysogenic bacteriophage. Both diphtheria toxin and Pseudomonas aeruginosa exotoxin A are multi-domain proteins. These domains provide a EF2 ADP_ribosylating, receptor-binding, and intracellular trafficking/transmembrane functions .
Probab=31.63 E-value=39 Score=32.16 Aligned_cols=48 Identities=17% Similarity=0.205 Sum_probs=34.5
Q ss_pred eccCCccchhhhcccCCCCCCCCCCCCCc-eeeeeeeechhhhhhhccccc
Q 037230 655 WCGTRSSNLLRHLQKGFLPASCSLPVPGY-MFGRAIVCSDAAAEAARYGFT 704 (815)
Q Consensus 655 wHGSr~~N~~gIL~~Gl~iap~~a~~tG~-mFGkGIYFAd~~skS~~Yc~~ 704 (815)
+|||...-.-+|.. |.+.++... .+.+ --=+|.|.||...-++.|+..
T Consensus 3 YHGT~~~~~~sI~~-gI~~~~~g~-~~~~d~~W~GfY~a~~~~~A~GYa~d 51 (147)
T cd01436 3 YHGTKPGYVDSIQK-GIQKPKSGT-QGNYDDDWKGFYSTDNKYDAAGYSVD 51 (147)
T ss_pred ccccchHHHHHHHh-hccCCCCCC-CcchhhhhcceeecCCHhhhcceeec
Confidence 79999999999988 776433311 1111 112799999999999999975
No 81
>PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [].
Probab=30.69 E-value=38 Score=24.95 Aligned_cols=21 Identities=33% Similarity=0.615 Sum_probs=16.0
Q ss_pred CCCCCCCCCeeEEeC--ceeEee
Q 037230 111 LDKCPVCNGNLEFDG--KRYSCK 131 (815)
Q Consensus 111 l~~Cp~C~g~l~~~~--~~Y~C~ 131 (815)
+..|+.|++.+++++ +.|.|.
T Consensus 3 ~~~C~~C~~~~i~~~~~~~~~C~ 25 (33)
T PF08792_consen 3 LKKCSKCGGNGIVNKEDDYEVCI 25 (33)
T ss_pred ceEcCCCCCCeEEEecCCeEEcc
Confidence 467999988888843 678884
No 82
>PRK01103 formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase; Validated
Probab=30.17 E-value=32 Score=37.38 Aligned_cols=27 Identities=26% Similarity=0.619 Sum_probs=19.7
Q ss_pred hhcCC-CCCCCCCCCeeEE---eC-ceeEeec
Q 037230 106 LFYGP-LDKCPVCNGNLEF---DG-KRYSCKG 132 (815)
Q Consensus 106 ~~fG~-l~~Cp~C~g~l~~---~~-~~Y~C~G 132 (815)
.+||+ -.|||.|+..+.. .+ +.|+|..
T Consensus 239 ~Vy~R~g~pC~~Cg~~I~~~~~~gR~t~~CP~ 270 (274)
T PRK01103 239 QVYGREGEPCRRCGTPIEKIKQGGRSTFFCPR 270 (274)
T ss_pred EEcCCCCCCCCCCCCeeEEEEECCCCcEECcC
Confidence 57886 4699999875543 34 6899973
No 83
>PRK11827 hypothetical protein; Provisional
Probab=29.74 E-value=35 Score=28.67 Aligned_cols=15 Identities=47% Similarity=1.106 Sum_probs=12.7
Q ss_pred CCCCCCCCCeeEEeC
Q 037230 111 LDKCPVCNGNLEFDG 125 (815)
Q Consensus 111 l~~Cp~C~g~l~~~~ 125 (815)
+.-||.|+|.|.|+.
T Consensus 8 ILaCP~ckg~L~~~~ 22 (60)
T PRK11827 8 IIACPVCNGKLWYNQ 22 (60)
T ss_pred heECCCCCCcCeEcC
Confidence 456999999999984
No 84
>PRK08332 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=29.67 E-value=32 Score=46.36 Aligned_cols=29 Identities=31% Similarity=0.788 Sum_probs=24.5
Q ss_pred CCCCCCCCe------eEEeCceeEeecCCcCcccccc
Q 037230 112 DKCPVCNGN------LEFDGKRYSCKGMYSEWSTCTF 142 (815)
Q Consensus 112 ~~Cp~C~g~------l~~~~~~Y~C~G~~sewtkC~~ 142 (815)
..||+|+.. |++.++...|.. -.|++|.-
T Consensus 1705 ~~cp~c~~~~~~~~~~~~~~gc~~c~~--cg~s~c~~ 1739 (1740)
T PRK08332 1705 VYCPVCYEKEGKLVELRMESGCATCPV--CGWSKCVI 1739 (1740)
T ss_pred CCCCCCCCCCCcceeeEecCCceeCCC--CCCccccC
Confidence 349999766 999999999997 58999973
No 85
>PRK14811 formamidopyrimidine-DNA glycosylase; Provisional
Probab=29.62 E-value=35 Score=37.13 Aligned_cols=27 Identities=30% Similarity=0.621 Sum_probs=19.8
Q ss_pred hhcCCC-CCCCCCCCeeEE---eC-ceeEeec
Q 037230 106 LFYGPL-DKCPVCNGNLEF---DG-KRYSCKG 132 (815)
Q Consensus 106 ~~fG~l-~~Cp~C~g~l~~---~~-~~Y~C~G 132 (815)
.+||+- .|||.|+..+.. .+ +.|+|..
T Consensus 229 ~Vy~R~g~pC~~Cg~~I~~~~~~gR~ty~Cp~ 260 (269)
T PRK14811 229 AVYGREGQPCPRCGTPIEKIVVGGRGTHFCPQ 260 (269)
T ss_pred EecCCCcCCCCcCCCeeEEEEECCCCcEECCC
Confidence 579884 699999875543 34 6899974
No 86
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=29.36 E-value=22 Score=36.47 Aligned_cols=34 Identities=21% Similarity=0.243 Sum_probs=21.4
Q ss_pred ceeeeccCCccchhhhcccCCCCCCCCCCCCCceeeeeeeechh
Q 037230 651 KVLLWCGTRSSNLLRHLQKGFLPASCSLPVPGYMFGRAIVCSDA 694 (815)
Q Consensus 651 ~~lLwHGSr~~N~~gIL~~Gl~iap~~a~~tG~mFGkGIYFAd~ 694 (815)
-..|+|||...+|-.|+.+||..+ -..-|.||..
T Consensus 105 p~~lyHGT~~~~~~~I~~~GL~~m----------~R~hVHls~~ 138 (186)
T PF01885_consen 105 PPILYHGTYRKAWPSILEEGLKPM----------GRNHVHLSTG 138 (186)
T ss_dssp -SEEEE--BGGGHHHHHHH-B-------------SSSSEEEES-
T ss_pred CCEEEEccchhhHHHHHHhCCCCC----------CCCEEEEeec
Confidence 369999999999999999997642 2234778766
No 87
>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27). It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].
Probab=29.24 E-value=46 Score=25.78 Aligned_cols=32 Identities=28% Similarity=0.489 Sum_probs=23.2
Q ss_pred HHhhhhhhcCCC---CCCCCCCCeeEEe-CceeEee
Q 037230 100 TKCLDMLFYGPL---DKCPVCNGNLEFD-GKRYSCK 131 (815)
Q Consensus 100 ~~~aD~~~fG~l---~~Cp~C~g~l~~~-~~~Y~C~ 131 (815)
.++|+.|+=|.- ..||.|+..|.=+ .+..+|.
T Consensus 3 k~m~~~LL~G~~ML~~~Cp~C~~PL~~~k~g~~~Cv 38 (41)
T PF06677_consen 3 KKMGEYLLQGWTMLDEHCPDCGTPLMRDKDGKIYCV 38 (41)
T ss_pred HHHHHHHHHhHhHhcCccCCCCCeeEEecCCCEECC
Confidence 567788888875 8999997666553 3667775
No 88
>TIGR01057 topA_arch DNA topoisomerase I, archaeal. This model describes topoisomerase I from archaea. These enzymes are involved in the control of DNA topology. DNA topoisomerase I belongs to the type I topoisomerases, which are ATP-independent.
Probab=28.27 E-value=37 Score=41.38 Aligned_cols=23 Identities=30% Similarity=0.741 Sum_probs=16.8
Q ss_pred CCCCCCCCCeeEEe---C-ceeEeecC
Q 037230 111 LDKCPVCNGNLEFD---G-KRYSCKGM 133 (815)
Q Consensus 111 l~~Cp~C~g~l~~~---~-~~Y~C~G~ 133 (815)
..+||.|+++++.. . ..|.|+||
T Consensus 589 ~~~CPkCg~~l~~~~~k~g~f~gCs~y 615 (618)
T TIGR01057 589 VGKCPKCGGKLVSKYAKKGRFVGCSNY 615 (618)
T ss_pred cCCCCcCCCeeeeeecCCccEEECCCC
Confidence 36899998877643 2 34999987
No 89
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=28.17 E-value=36 Score=28.17 Aligned_cols=19 Identities=32% Similarity=0.903 Sum_probs=14.1
Q ss_pred HhhhhhhcCCCCCCCCCCCeeE
Q 037230 101 KCLDMLFYGPLDKCPVCNGNLE 122 (815)
Q Consensus 101 ~~aD~~~fG~l~~Cp~C~g~l~ 122 (815)
.||+.++ -..||.|+|.|+
T Consensus 34 ~C~e~~l---~~~CPNCgGelv 52 (57)
T PF06906_consen 34 DCAETML---NGVCPNCGGELV 52 (57)
T ss_pred HHHHHHh---cCcCcCCCCccc
Confidence 4666665 467999998875
No 90
>TIGR00577 fpg formamidopyrimidine-DNA glycosylase (fpg). All proteins in the FPG family with known functions are FAPY-DNA glycosylases that function in base excision repair. Homologous to endonuclease VIII (nei). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=27.92 E-value=39 Score=36.76 Aligned_cols=27 Identities=26% Similarity=0.495 Sum_probs=20.0
Q ss_pred hhcCCC-CCCCCCCCeeEEe---C-ceeEeec
Q 037230 106 LFYGPL-DKCPVCNGNLEFD---G-KRYSCKG 132 (815)
Q Consensus 106 ~~fG~l-~~Cp~C~g~l~~~---~-~~Y~C~G 132 (815)
.+||+- .|||.|+..+... + ..|+|..
T Consensus 239 ~Vy~r~g~pC~~Cg~~I~~~~~~gR~t~~CP~ 270 (272)
T TIGR00577 239 QVYGRKGEPCRRCGTPIEKIKVGGRGTHFCPQ 270 (272)
T ss_pred EEeCCCCCCCCCCCCeeEEEEECCCCCEECCC
Confidence 578884 6999998765544 4 6899974
No 91
>COG2835 Uncharacterized conserved protein [Function unknown]
Probab=27.61 E-value=45 Score=27.98 Aligned_cols=21 Identities=38% Similarity=0.967 Sum_probs=15.5
Q ss_pred CCCCCCCCCeeEEeC--ceeEee
Q 037230 111 LDKCPVCNGNLEFDG--KRYSCK 131 (815)
Q Consensus 111 l~~Cp~C~g~l~~~~--~~Y~C~ 131 (815)
+.-||.|+|.|.|+. +.-+|+
T Consensus 8 iLaCP~~kg~L~~~~~~~~L~c~ 30 (60)
T COG2835 8 ILACPVCKGPLVYDEEKQELICP 30 (60)
T ss_pred eeeccCcCCcceEeccCCEEEec
Confidence 456999999999996 344444
No 92
>PF13408 Zn_ribbon_recom: Recombinase zinc beta ribbon domain
Probab=27.14 E-value=54 Score=26.22 Aligned_cols=35 Identities=17% Similarity=0.402 Sum_probs=24.3
Q ss_pred cCCCCCCCCCCCeeEEeC-----ceeEeecCCcCcccccc
Q 037230 108 YGPLDKCPVCNGNLEFDG-----KRYSCKGMYSEWSTCTF 142 (815)
Q Consensus 108 fG~l~~Cp~C~g~l~~~~-----~~Y~C~G~~sewtkC~~ 142 (815)
|--+..|+.|+..+.... ..|.|.+....-..|..
T Consensus 2 l~g~l~C~~CG~~m~~~~~~~~~~yy~C~~~~~~~~~C~~ 41 (58)
T PF13408_consen 2 LSGLLRCGHCGSKMTRRKRKGKYRYYRCSNRRRKGKGCPN 41 (58)
T ss_pred CCCcEEcccCCcEeEEEECCCCceEEEcCCCcCCCCCCCC
Confidence 555778999988766653 36888888654335764
No 93
>TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70). Proteins in this family are involved in non-homologous end joining, a process used for the repair of double stranded DNA breaks. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Cutoff does not detect the putative ku70 homologs in yeast.
Probab=26.89 E-value=99 Score=37.48 Aligned_cols=47 Identities=9% Similarity=0.159 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhh
Q 037230 58 GDVTAEFEEFCKSIEGQLSAEQMREILELNGQDSSGSDVAVVTKCLDML 106 (815)
Q Consensus 58 k~q~~~lw~~~d~l~~~~~~~~l~~lL~~N~q~~~~~~~~ll~~~aD~~ 106 (815)
..+...+|+ .+.|. .||+++||+.|.++|....|-+..|++++...+
T Consensus 537 ~~~~~~~~~-~~~l~-kltv~~Lk~~l~~~g~~~~~kKadLi~~i~~~~ 583 (584)
T TIGR00578 537 EEELREHAK-KGTLG-KLTVSVLKDFCRAYGLRSGSKKQELLDALTKHF 583 (584)
T ss_pred HHHHHHHHH-cCChh-hccHHHHHHHHHHcCCCccccHHHHHHHHHHHh
Confidence 456777787 57775 499999999999999887788899999987653
No 94
>PRK13945 formamidopyrimidine-DNA glycosylase; Provisional
Probab=26.56 E-value=41 Score=36.76 Aligned_cols=27 Identities=22% Similarity=0.469 Sum_probs=19.7
Q ss_pred hhcCCC-CCCCCCCCeeEE---eC-ceeEeec
Q 037230 106 LFYGPL-DKCPVCNGNLEF---DG-KRYSCKG 132 (815)
Q Consensus 106 ~~fG~l-~~Cp~C~g~l~~---~~-~~Y~C~G 132 (815)
.+||+- .|||.|+..+.. .+ +.|+|..
T Consensus 248 ~Vy~R~g~pC~~Cg~~I~~~~~~gR~t~~CP~ 279 (282)
T PRK13945 248 WVYRRTGKPCRKCGTPIERIKLAGRSTHWCPN 279 (282)
T ss_pred EEeCCCcCCCCcCCCeeEEEEECCCccEECCC
Confidence 478874 699999876544 34 6899974
No 95
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.24 E-value=31 Score=29.88 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=16.8
Q ss_pred HHhhhhhhcCCCCCCCCCCCeeE
Q 037230 100 TKCLDMLFYGPLDKCPVCNGNLE 122 (815)
Q Consensus 100 ~~~aD~~~fG~l~~Cp~C~g~l~ 122 (815)
-.|||+..----+-||.|+|.|+
T Consensus 30 TFCadCae~~l~g~CPnCGGelv 52 (84)
T COG3813 30 TFCADCAENRLHGLCPNCGGELV 52 (84)
T ss_pred ehhHhHHHHhhcCcCCCCCchhh
Confidence 35788876555578999988765
No 96
>PRK14810 formamidopyrimidine-DNA glycosylase; Provisional
Probab=26.07 E-value=44 Score=36.35 Aligned_cols=26 Identities=19% Similarity=0.421 Sum_probs=19.3
Q ss_pred hhcCC-CCCCCCCCCee---EEeC-ceeEee
Q 037230 106 LFYGP-LDKCPVCNGNL---EFDG-KRYSCK 131 (815)
Q Consensus 106 ~~fG~-l~~Cp~C~g~l---~~~~-~~Y~C~ 131 (815)
.+||+ -.|||.|+..+ .+.+ ..|+|.
T Consensus 238 ~Vy~R~g~pCprCG~~I~~~~~~gR~t~~CP 268 (272)
T PRK14810 238 RVYQRTGEPCLNCKTPIRRVVVAGRSSHYCP 268 (272)
T ss_pred eecCCCCCcCCCCCCeeEEEEECCCccEECc
Confidence 57887 46999998754 4445 689997
No 97
>PRK09710 lar restriction alleviation and modification protein; Reviewed
Probab=25.69 E-value=40 Score=28.63 Aligned_cols=15 Identities=27% Similarity=0.811 Sum_probs=12.0
Q ss_pred hhcCCCCCCCCCCCe
Q 037230 106 LFYGPLDKCPVCNGN 120 (815)
Q Consensus 106 ~~fG~l~~Cp~C~g~ 120 (815)
|-|-.|+|||-|+.+
T Consensus 1 ~~~d~lKPCPFCG~~ 15 (64)
T PRK09710 1 MRYDNVKPCPFCGCP 15 (64)
T ss_pred CCcccccCCCCCCCc
Confidence 457789999999764
No 98
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=25.22 E-value=44 Score=22.89 Aligned_cols=11 Identities=36% Similarity=1.102 Sum_probs=9.0
Q ss_pred CCCCCCCCCee
Q 037230 111 LDKCPVCNGNL 121 (815)
Q Consensus 111 l~~Cp~C~g~l 121 (815)
+.+||.|+..+
T Consensus 2 l~~C~~CgR~F 12 (25)
T PF13913_consen 2 LVPCPICGRKF 12 (25)
T ss_pred CCcCCCCCCEE
Confidence 67899998775
No 99
>PRK11032 hypothetical protein; Provisional
Probab=24.91 E-value=42 Score=33.72 Aligned_cols=62 Identities=21% Similarity=0.307 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHHHHHhcCCHHHHHHHH---HHhCCC----CCCChHHHHHHhhhhhhc---CCCCCCCCCCC
Q 037230 57 SGDVTAEFEEFCKSIEGQLSAEQMREIL---ELNGQD----SSGSDVAVVTKCLDMLFY---GPLDKCPVCNG 119 (815)
Q Consensus 57 ~k~q~~~lw~~~d~l~~~~~~~~l~~lL---~~N~q~----~~~~~~~ll~~~aD~~~f---G~l~~Cp~C~g 119 (815)
+.---+.||.---.+-. -|.-+.+++. +.+|.. +.|.-.-+=..|-=-|.| |.++|||.|++
T Consensus 79 ~~~i~~slw~~L~~ItD-rTqvEw~el~~dl~h~g~Y~sGEvvg~G~LvC~~Cg~~~~~~~p~~i~pCp~C~~ 150 (160)
T PRK11032 79 MRVIKESLWQELADITD-KTQLEWREVFQDLNHHGVYHSGEVVGLGNLVCEKCHHHLAFYTPEVLPLCPKCGH 150 (160)
T ss_pred HHHHHHHHHHHHHHHHH-HhHHHHHHHHHHhhhcCeeecceeeecceEEecCCCCEEEecCCCcCCCCCCCCC
Confidence 44445667765554432 3344444444 444432 223222333444444444 88999999965
No 100
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.81 E-value=1.1e+02 Score=27.96 Aligned_cols=33 Identities=18% Similarity=0.243 Sum_probs=26.4
Q ss_pred CCCCCcEEEEeeccccchHHHHHHHHHcCCEEEe
Q 037230 188 KPFTGMTISLMGRLSRTHQYWRTTIEKHGGKVAA 221 (815)
Q Consensus 188 ~~L~g~~~~isG~l~~~r~elk~~Ie~~GG~v~~ 221 (815)
..-.|++|.+-|.- .+-++|++.||++||.+++
T Consensus 46 ~et~~~~itIeG~~-ldydei~~~iE~~Gg~IHS 78 (97)
T COG1888 46 VETENLKITIEGTN-LDYDEIEEVIEELGGAIHS 78 (97)
T ss_pred ehhcceEEEEEcCC-CCHHHHHHHHHHcCCeeee
Confidence 34568889998872 3568999999999999983
No 101
>COG1859 KptA RNA:NAD 2'-phosphotransferase [Translation, ribosomal structure and biogenesis]
Probab=23.62 E-value=38 Score=35.44 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=21.6
Q ss_pred CceeeeccCCccchhhhcccCCCCC
Q 037230 650 NKVLLWCGTRSSNLLRHLQKGFLPA 674 (815)
Q Consensus 650 N~~lLwHGSr~~N~~gIL~~Gl~ia 674 (815)
.-.-|+|||...++-+|+.+||...
T Consensus 119 ~p~~LyhGTs~~~l~~I~~~Gi~Pm 143 (211)
T COG1859 119 PPAVLYHGTSPEFLPSILEEGLKPM 143 (211)
T ss_pred CCcEEEecCChhhhHHHHHhcCccc
Confidence 3457999999999999999998754
No 102
>PRK07220 DNA topoisomerase I; Validated
Probab=23.55 E-value=54 Score=40.86 Aligned_cols=32 Identities=34% Similarity=0.868 Sum_probs=22.0
Q ss_pred CCCCCCCCCeeEEe----C-ceeEeecCCcCccccccccCC
Q 037230 111 LDKCPVCNGNLEFD----G-KRYSCKGMYSEWSTCTFRTKD 146 (815)
Q Consensus 111 l~~Cp~C~g~l~~~----~-~~Y~C~G~~sewtkC~~~~~~ 146 (815)
..+||.|++.++.. + ..|.|.+| -.|.+...-
T Consensus 589 ~~~CP~Cg~~l~~r~~r~g~~f~gCs~y----p~C~~~~~l 625 (740)
T PRK07220 589 IGKCPLCGSDLMVRRSKRGSRFIGCEGY----PECTFSLPL 625 (740)
T ss_pred ccccccCCCeeeEEecCCCceEEEcCCC----CCCCceeeC
Confidence 36899998877653 1 24889876 569876533
No 103
>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function.; PDB: 3BPD_I 2RAQ_F 2X3D_E.
Probab=23.30 E-value=1.1e+02 Score=28.01 Aligned_cols=41 Identities=20% Similarity=0.277 Sum_probs=30.0
Q ss_pred CCCCcEEEEeeccccchHHHHHHHHHcCCEEEeeccceeEEEeChH
Q 037230 189 PFTGMTISLMGRLSRTHQYWRTTIEKHGGKVAASPIGLTCLVASPA 234 (815)
Q Consensus 189 ~L~g~~~~isG~l~~~r~elk~~Ie~~GG~v~~~vs~~thlI~t~~ 234 (815)
--.|++|.+-|.- .+-+++++.|+++||.++ .++-+++++.
T Consensus 45 ete~lkitiEG~~-id~d~i~~~Ie~~Gg~IH----SIDeVvaG~~ 85 (95)
T PF02680_consen 45 ETENLKITIEGDD-IDFDEIKEAIEELGGVIH----SIDEVVAGKR 85 (95)
T ss_dssp SEEEEEEEEEESS-E-HHHHHHHHHHTT-EEE----EEEEEEEESS
T ss_pred cccEEEEEEEeCC-CCHHHHHHHHHHcCCeEE----eeeeeeecce
Confidence 3568899999972 356899999999999998 3456666654
No 104
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=23.23 E-value=52 Score=27.60 Aligned_cols=20 Identities=30% Similarity=0.750 Sum_probs=12.4
Q ss_pred CCCCCCCCeeEEe-------CceeEee
Q 037230 112 DKCPVCNGNLEFD-------GKRYSCK 131 (815)
Q Consensus 112 ~~Cp~C~g~l~~~-------~~~Y~C~ 131 (815)
-+||.|+..+++. |..|.|.
T Consensus 28 F~CPnCGe~~I~Rc~~CRk~g~~Y~Cp 54 (61)
T COG2888 28 FPCPNCGEVEIYRCAKCRKLGNPYRCP 54 (61)
T ss_pred eeCCCCCceeeehhhhHHHcCCceECC
Confidence 4778887665555 2456663
No 105
>PF04723 GRDA: Glycine reductase complex selenoprotein A; InterPro: IPR006812 Found in clostridia, this protein contains one active site selenocysteine and catalyses the reductive deamination of glycine, which is coupled to the esterification of orthophosphate resulting in the formation of ATP []. A member of this family may also exist in Treponema denticola [].; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=23.04 E-value=1.9e+02 Score=28.33 Aligned_cols=44 Identities=18% Similarity=0.332 Sum_probs=36.5
Q ss_pred CCCCcEEEEeeccc-cchHHHHHHHHHcCCEEEeeccceeEEEeChH
Q 037230 189 PFTGMTISLMGRLS-RTHQYWRTTIEKHGGKVAASPIGLTCLVASPA 234 (815)
Q Consensus 189 ~L~g~~~~isG~l~-~~r~elk~~Ie~~GG~v~~~vs~~thlI~t~~ 234 (815)
.|.|+++.+.|.-. .+-..+..-++..||.+..+ .|-|+|||..
T Consensus 2 ~l~gkKviiiGdRDGiPgpAie~c~~~~gaevvfs--~TeCFVctaa 46 (150)
T PF04723_consen 2 ILEGKKVIIIGDRDGIPGPAIEECVKTAGAEVVFS--STECFVCTAA 46 (150)
T ss_pred ccCCcEEEEEecCCCCCcHHHHHHHHhcCceEEEE--eeeEEEeccc
Confidence 48899999999754 56778999999999999877 5568888865
No 106
>PHA00626 hypothetical protein
Probab=22.36 E-value=61 Score=26.84 Aligned_cols=19 Identities=32% Similarity=0.910 Sum_probs=12.3
Q ss_pred CCCCCCC-eeEEe------CceeEee
Q 037230 113 KCPVCNG-NLEFD------GKRYSCK 131 (815)
Q Consensus 113 ~Cp~C~g-~l~~~------~~~Y~C~ 131 (815)
.||.|+. +++=. +..|+|.
T Consensus 2 ~CP~CGS~~Ivrcg~cr~~snrYkCk 27 (59)
T PHA00626 2 SCPKCGSGNIAKEKTMRGWSDDYVCC 27 (59)
T ss_pred CCCCCCCceeeeeceecccCcceEcC
Confidence 6999965 55532 3567775
No 107
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=21.68 E-value=76 Score=27.55 Aligned_cols=25 Identities=32% Similarity=0.971 Sum_probs=17.5
Q ss_pred CCCCCCCeeEEeCceeEeecCCcCc
Q 037230 113 KCPVCNGNLEFDGKRYSCKGMYSEW 137 (815)
Q Consensus 113 ~Cp~C~g~l~~~~~~Y~C~G~~sew 137 (815)
.||.|...|.-.++.|.|..=-.+|
T Consensus 3 ~CP~C~~~L~~~~~~~~C~~C~~~~ 27 (70)
T PF07191_consen 3 TCPKCQQELEWQGGHYHCEACQKDY 27 (70)
T ss_dssp B-SSS-SBEEEETTEEEETTT--EE
T ss_pred cCCCCCCccEEeCCEEECccccccc
Confidence 6999988899999999997654443
No 108
>PRK14973 DNA topoisomerase I; Provisional
Probab=20.56 E-value=60 Score=41.47 Aligned_cols=30 Identities=33% Similarity=0.902 Sum_probs=21.2
Q ss_pred CCCCCCCCCeeEEe----CceeEeecCCcCcccccccc
Q 037230 111 LDKCPVCNGNLEFD----GKRYSCKGMYSEWSTCTFRT 144 (815)
Q Consensus 111 l~~Cp~C~g~l~~~----~~~Y~C~G~~sewtkC~~~~ 144 (815)
.++||.|++.+... +..|.|+|| -.|.|+.
T Consensus 588 ~~~CP~CG~~l~ik~~k~gkFigCS~Y----p~Ck~t~ 621 (936)
T PRK14973 588 IGPCPVCGKDLRIKHIGSSQFIGCSGY----PDCTFNI 621 (936)
T ss_pred cccCCcccccceeecccCceeEECCCC----CCCCccc
Confidence 36899998766533 235899887 4598764
No 109
>PRK07219 DNA topoisomerase I; Validated
Probab=20.48 E-value=89 Score=39.48 Aligned_cols=33 Identities=30% Similarity=0.682 Sum_probs=22.5
Q ss_pred CCCCCCCCCeeEEeC-----ceeEeecCCcCccccccccCCC
Q 037230 111 LDKCPVCNGNLEFDG-----KRYSCKGMYSEWSTCTFRTKDP 147 (815)
Q Consensus 111 l~~Cp~C~g~l~~~~-----~~Y~C~G~~sewtkC~~~~~~p 147 (815)
..+||.|++.+.... ..|.|.|| -.|.++..-|
T Consensus 602 ~~~CP~Cg~~l~~r~~~~g~~F~gCs~y----p~C~~t~~lp 639 (822)
T PRK07219 602 IGKCPECGGDLIIIRTDKGSRFVGCSGY----PDCRNTFPLP 639 (822)
T ss_pred cCcCCCCCCcceeeeccCCceeeecCCC----cCCCCeeecC
Confidence 578999987666432 23899987 4598764433
No 110
>PF12672 DUF3793: Protein of unknown function (DUF3793); InterPro: IPR024523 This family of bacterial proteins is functionally uncharacterised. The proteins in this family contain two conserved sequence motifs: PHE and LGYP.
Probab=20.31 E-value=1.1e+02 Score=31.15 Aligned_cols=62 Identities=24% Similarity=0.288 Sum_probs=49.0
Q ss_pred HHHHHhcCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhhhcCCCCCCCC----------C--CCeeEEeCceeEeecC
Q 037230 68 CKSIEGQLSAEQMREILELNGQDSSGSDVAVVTKCLDMLFYGPLDKCPV----------C--NGNLEFDGKRYSCKGM 133 (815)
Q Consensus 68 ~d~l~~~~~~~~l~~lL~~N~q~~~~~~~~ll~~~aD~~~fG~l~~Cp~----------C--~g~l~~~~~~Y~C~G~ 133 (815)
.+.|++.+..++.+.+|..-|- .+.+-+.+|++++.-| .-..||+ + .|.+..+|..|.|+|+
T Consensus 63 ~~~L~~~L~~~~~~~fL~~~GY-~~~~~~~~L~~L~~R~---~~~~FPHEIGiFLGYPleDV~GFI~~~g~~~~~~Gy 136 (176)
T PF12672_consen 63 EKLLERYLSDPEVRSFLKSYGY-PDSSLEDCLEHLKKRF---ESGEFPHEIGIFLGYPLEDVKGFIENKGKNCKCCGY 136 (176)
T ss_pred HHHHHHHHCCHHHHHHHHHCCc-CCCCHHHHHHHHHHHh---cCCCCCchhHhccCCCHHHHHHHHhCCCCCeeEecc
Confidence 4577788899999999999997 7788889999999999 3333664 4 3556677788999998
No 111
>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A.
Probab=20.24 E-value=93 Score=23.33 Aligned_cols=28 Identities=21% Similarity=0.398 Sum_probs=17.1
Q ss_pred cCCHHHHHHHHHHhCCCCCC--ChHHHHHH
Q 037230 74 QLSAEQMREILELNGQDSSG--SDVAVVTK 101 (815)
Q Consensus 74 ~~~~~~l~~lL~~N~q~~~~--~~~~ll~~ 101 (815)
.++.++||.+|.++|.+-|+ -..+|+..
T Consensus 3 sltV~~Lk~iL~~~~I~~ps~AkKaeLv~L 32 (35)
T PF12949_consen 3 SLTVAQLKRILDEHGIEFPSNAKKAELVAL 32 (35)
T ss_dssp T--SHHHHHHHHHHT---SSS--SHHHHHH
T ss_pred cCcHHHHHHHHHHcCCCCCCCCCHHHHHHH
Confidence 47899999999999976654 44566554
No 112
>cd04476 RPA1_DBD_C RPA1_DBD_C: A subfamily of OB folds corresponding to the C-terminal OB fold, the ssDNA-binding domain (DBD)-C, of human RPA1 (also called RPA70). RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-C, RPA1 contains three other OB folds: DBD-A, DBD-B, and RPA1N. The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B. RPA1 DBD-C is involved in DNA binding and trimerization. It contains two structural insertions not found to date in other OB-folds: a zinc ribbon and a three-helix bundle. RPA1 DBD-C also contains a Cys4-type zinc-binding motif, which plays a role in the ssDNA binding fun
Probab=20.04 E-value=53 Score=32.67 Aligned_cols=31 Identities=29% Similarity=0.747 Sum_probs=23.6
Q ss_pred CCCCCCCCeeEEeC-ceeEeecCCcCccccccccCCCCC
Q 037230 112 DKCPVCNGNLEFDG-KRYSCKGMYSEWSTCTFRTKDPPR 149 (815)
Q Consensus 112 ~~Cp~C~g~l~~~~-~~Y~C~G~~sewtkC~~~~~~p~R 149 (815)
..||.|++.+...+ +.|.|. +|.-...+|..
T Consensus 35 ~aC~~C~kkv~~~~~~~~~C~-------~C~~~~~~~~~ 66 (166)
T cd04476 35 PACPGCNKKVVEEGNGTYRCE-------KCNKSVPNPEY 66 (166)
T ss_pred ccccccCcccEeCCCCcEECC-------CCCCcCCCccE
Confidence 67999988888777 789996 47665556665
Done!