Query 037230
Match_columns 815
No_of_seqs 400 out of 893
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 17:04:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037230.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037230hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dqy_C Poly [ADP-ribose] polym 100.0 5E-125 2E-129 1073.9 44.4 486 302-808 4-495 (506)
2 3kjd_A Poly [ADP-ribose] polym 100.0 6.1E-92 2.1E-96 771.7 29.6 344 449-806 17-368 (368)
3 1efy_A Poly (ADP-ribose) polym 100.0 8.5E-89 2.9E-93 748.1 32.4 345 452-808 1-350 (350)
4 3c4h_A Poly(ADP-ribose) polyme 100.0 4.1E-82 1.4E-86 697.3 25.6 339 449-803 4-357 (357)
5 2riq_A Poly [ADP-ribose] polym 100.0 4.9E-41 1.7E-45 325.8 6.1 137 38-179 7-144 (160)
6 2x5y_A Zinc finger CCCH-type a 100.0 1.2E-37 4.2E-42 311.0 10.8 166 588-804 2-172 (173)
7 3u9h_A Tankyrase-2; protein-li 100.0 3.2E-37 1.1E-41 322.2 13.8 182 589-805 29-236 (240)
8 2pqf_A Poly [ADP-ribose] polym 100.0 1.5E-35 5.1E-40 302.1 15.1 170 588-806 9-195 (198)
9 3blj_A Poly(ADP-ribose) polyme 100.0 2.4E-34 8.2E-39 297.8 14.1 168 588-803 34-220 (221)
10 3hkv_A PARP-10, poly [ADP-ribo 100.0 7.3E-34 2.5E-38 292.3 13.6 174 590-807 10-202 (217)
11 3smj_A Poly [ADP-ribose] polym 100.0 2.1E-33 7.1E-38 285.0 13.4 167 590-803 8-192 (193)
12 2eoc_A Poly [ADP-ribose] polym 100.0 2E-31 6.7E-36 251.4 9.8 118 306-432 6-124 (124)
13 4f0d_A PARP-16, poly [ADP-ribo 99.8 1.4E-20 4.8E-25 198.4 11.7 117 592-722 94-219 (277)
14 2cok_A Poly [ADP-ribose] polym 99.6 2E-16 6.9E-21 146.3 7.9 84 184-269 5-89 (113)
15 3l3e_A DNA topoisomerase 2-bin 99.6 4E-16 1.4E-20 143.2 9.1 92 185-278 11-103 (107)
16 2d8m_A DNA-repair protein XRCC 99.6 1.1E-15 3.7E-20 145.2 9.3 98 178-280 11-109 (129)
17 3l46_A Protein ECT2; alternati 99.5 4.8E-15 1.6E-19 137.1 4.0 87 187-278 19-106 (112)
18 1l7b_A DNA ligase; BRCT, autos 99.5 1.3E-14 4.4E-19 129.6 6.5 77 185-266 3-80 (92)
19 2k6g_A Replication factor C su 99.5 8.4E-14 2.9E-18 128.1 9.1 77 187-267 30-108 (109)
20 2ebu_A Replication factor C su 99.4 1.5E-13 5.1E-18 126.8 8.8 76 187-266 20-97 (112)
21 2cou_A ECT2 protein; BRCT doma 99.4 5.2E-14 1.8E-18 129.7 3.0 88 187-279 10-98 (109)
22 4id3_A DNA repair protein REV1 99.4 1.1E-12 3.7E-17 116.3 8.4 84 187-277 5-91 (92)
23 2ebw_A DNA repair protein REV1 99.3 1.9E-12 6.6E-17 116.2 8.0 88 184-278 7-96 (97)
24 3olc_X DNA topoisomerase 2-bin 99.3 5.4E-12 1.9E-16 136.0 8.5 88 187-279 197-286 (298)
25 3ef1_A RNA polymerase II subun 99.2 1.1E-11 3.8E-16 139.1 8.5 86 187-277 350-441 (442)
26 3ef0_A RNA polymerase II subun 99.2 1.7E-11 5.7E-16 135.8 9.4 86 187-277 280-371 (372)
27 3pa6_A Microcephalin; BRCT dom 99.2 3.5E-11 1.2E-15 110.4 9.2 88 187-279 5-97 (107)
28 1wf6_A Similar to S.pombe -RAD 99.1 3.6E-10 1.2E-14 107.4 9.4 87 186-278 37-127 (132)
29 3pc6_A DNA repair protein XRCC 99.0 1.2E-09 4E-14 99.6 9.4 88 187-279 5-96 (104)
30 3olc_X DNA topoisomerase 2-bin 98.9 1.5E-09 5.1E-14 117.0 9.2 81 187-272 103-184 (298)
31 1kzy_C Tumor suppressor P53-bi 98.9 2.2E-09 7.5E-14 113.4 8.7 89 186-278 12-136 (259)
32 3sqd_A PAX-interacting protein 98.9 2.1E-09 7.1E-14 110.9 7.2 87 188-278 12-98 (219)
33 3ii6_X DNA ligase 4; XRCC4, NH 98.8 5.4E-09 1.8E-13 110.7 9.3 88 185-278 6-96 (263)
34 2vxb_A DNA repair protein RHP9 98.8 4.1E-09 1.4E-13 110.2 8.1 87 189-279 2-118 (241)
35 1l0b_A BRCA1; TANDEM-BRCT, thr 98.8 5.7E-09 2E-13 107.6 8.9 91 188-279 3-96 (229)
36 1t15_A Breast cancer type 1 su 98.8 5.8E-09 2E-13 106.1 7.1 88 191-279 3-93 (214)
37 2nte_A BARD-1, BRCA1-associate 98.8 6.9E-09 2.4E-13 105.8 7.3 85 192-278 2-87 (210)
38 1dgs_A DNA ligase; AMP complex 98.8 7.5E-10 2.6E-14 130.1 0.0 76 187-267 585-661 (667)
39 2owo_A DNA ligase; protein-DNA 98.8 9.3E-10 3.2E-14 129.4 0.0 73 188-265 596-670 (671)
40 3al2_A DNA topoisomerase 2-bin 98.7 1.1E-08 3.9E-13 106.4 7.6 89 187-279 4-95 (235)
41 2etx_A Mediator of DNA damage 98.7 2.8E-08 9.5E-13 101.5 8.4 85 187-278 7-91 (209)
42 3u3z_A Microcephalin; DNA repa 98.6 8.1E-08 2.8E-12 97.5 8.5 84 192-279 11-96 (199)
43 3l41_A BRCT-containing protein 98.3 2.9E-07 9.9E-12 94.9 5.0 82 190-278 6-87 (220)
44 3u3z_A Microcephalin; DNA repa 98.3 3.1E-07 1.1E-11 93.2 5.0 81 187-278 117-198 (199)
45 1t15_A Breast cancer type 1 su 98.3 7.7E-07 2.6E-11 90.3 7.0 91 187-278 113-211 (214)
46 2ep8_A Pescadillo homolog 1; A 98.3 1.1E-06 3.8E-11 79.4 7.2 82 184-276 7-100 (100)
47 1z56_C DNA ligase IV; DNA repa 98.3 8.2E-08 2.8E-12 101.3 -0.3 88 185-278 1-101 (264)
48 1l0b_A BRCA1; TANDEM-BRCT, thr 98.2 1.1E-06 3.8E-11 90.4 7.0 91 187-279 115-214 (229)
49 3ii6_X DNA ligase 4; XRCC4, NH 98.1 2.3E-06 7.9E-11 90.4 6.1 89 186-277 161-263 (263)
50 2etx_A Mediator of DNA damage 98.0 1.1E-05 3.8E-10 82.1 8.4 87 187-279 113-203 (209)
51 2jw5_A DNA polymerase lambda; 97.9 6.3E-06 2.2E-10 75.2 4.2 92 186-278 8-104 (106)
52 3pc7_A DNA ligase 3; DNA repai 97.8 1.7E-05 5.7E-10 69.8 5.2 71 188-272 15-87 (88)
53 1z56_C DNA ligase IV; DNA repa 97.8 7.6E-06 2.6E-10 86.1 3.2 93 185-278 156-262 (264)
54 2nte_A BARD-1, BRCA1-associate 97.7 1.9E-05 6.4E-10 80.3 4.3 83 187-273 102-209 (210)
55 3sqd_A PAX-interacting protein 97.7 0.00011 3.8E-09 75.5 9.7 85 187-277 120-218 (219)
56 2coe_A Deoxynucleotidyltransfe 97.6 0.00011 3.9E-09 68.3 7.4 90 184-278 15-115 (120)
57 1kzy_C Tumor suppressor P53-bi 97.6 0.0002 6.8E-09 75.4 10.1 85 186-274 152-248 (259)
58 2dun_A POL MU, DNA polymerase 97.2 0.00042 1.4E-08 65.1 5.9 92 185-278 6-108 (133)
59 3al2_A DNA topoisomerase 2-bin 96.8 0.0016 5.3E-08 67.6 7.2 91 187-278 133-229 (235)
60 2ra8_A Uncharacterized protein 96.8 0.0015 5.1E-08 72.0 6.7 57 346-409 9-65 (362)
61 2l42_A DNA-binding protein RAP 96.7 0.00096 3.3E-08 59.0 3.4 79 187-278 9-95 (106)
62 3l41_A BRCT-containing protein 95.7 0.023 8E-07 58.2 8.5 81 187-269 111-206 (220)
63 2vxb_A DNA repair protein RHP9 95.4 0.012 4.1E-07 61.1 5.1 76 187-271 149-240 (241)
64 4gns_A Chitin biosynthesis pro 92.9 0.21 7.2E-06 48.4 7.3 89 189-279 161-255 (290)
65 3huf_A DNA repair and telomere 92.0 0.13 4.4E-06 55.1 5.0 59 205-265 126-186 (325)
66 3t7k_A RTT107, regulator of TY 81.2 3.3 0.00011 42.9 7.7 84 191-278 21-119 (256)
67 3oq4_A DBF4, protein DNA52; DD 78.1 3.2 0.00011 38.9 5.8 63 204-266 31-97 (134)
68 2rnn_A E3 SUMO-protein ligase 77.8 4.7 0.00016 36.8 6.7 49 59-108 25-73 (114)
69 1pft_A TFIIB, PFTFIIBN; N-term 70.9 2.9 9.9E-05 32.2 3.1 22 111-132 5-29 (50)
70 3oq0_A DBF4, protein DNA52; DD 70.7 8.2 0.00028 36.8 6.7 62 205-266 49-114 (151)
71 2do1_A Nuclear protein HCC-1; 66.6 7.7 0.00026 30.8 4.7 36 74-109 12-47 (55)
72 2akl_A PHNA-like protein PA012 64.6 3.5 0.00012 38.2 2.7 34 105-138 21-55 (138)
73 1h1j_S THO1 protein; SAP domai 62.0 11 0.00037 29.5 4.7 32 74-105 7-38 (51)
74 1zrj_A E1B-55KDA-associated pr 61.1 12 0.00042 29.0 4.8 33 74-106 12-44 (50)
75 2kvu_A MKL/myocardin-like prot 56.4 14 0.00048 31.2 4.7 34 74-107 28-61 (75)
76 2kpi_A Uncharacterized protein 49.5 11 0.00039 29.8 3.0 22 111-132 10-31 (56)
77 1wfx_A Probable RNA 2'-phospho 46.8 6.4 0.00022 39.0 1.4 36 652-697 92-127 (186)
78 3qbz_A DDK kinase regulatory s 46.5 21 0.00072 34.3 4.9 77 189-265 58-151 (160)
79 1jjr_A KU70, thyroid autoantig 38.9 24 0.00081 33.8 3.9 46 58-105 49-94 (151)
80 2pk7_A Uncharacterized protein 37.1 20 0.00068 29.7 2.7 22 111-132 8-31 (69)
81 2js4_A UPF0434 protein BB2007; 35.7 23 0.00078 29.4 2.9 22 111-132 8-31 (70)
82 1dl6_A Transcription factor II 34.6 18 0.0006 28.9 1.9 22 110-131 10-34 (58)
83 2gai_A DNA topoisomerase I; zi 34.0 5.4 0.00019 46.9 -1.7 34 108-145 569-608 (633)
84 2jr6_A UPF0434 protein NMA0874 33.1 24 0.00083 29.1 2.6 22 111-132 8-31 (68)
85 2jny_A Uncharacterized BCR; st 32.4 26 0.00089 28.8 2.7 22 111-132 10-33 (67)
86 2hf1_A Tetraacyldisaccharide-1 31.8 25 0.00086 29.0 2.5 22 111-132 8-31 (68)
87 1l8d_A DNA double-strand break 29.9 51 0.0018 29.2 4.5 12 111-122 47-58 (112)
88 3j20_Y 30S ribosomal protein S 29.5 27 0.00092 27.0 2.1 21 111-131 19-41 (50)
89 1nui_A DNA primase/helicase; z 29.5 14 0.00049 37.8 0.8 25 107-131 10-37 (255)
90 2dod_A Transcription elongatio 26.1 65 0.0022 27.5 4.2 31 385-415 11-41 (82)
91 2raq_A Conserved protein MTH88 25.1 67 0.0023 28.3 4.1 42 188-234 46-87 (97)
92 1k3x_A Endonuclease VIII; hydr 24.9 27 0.00093 36.2 1.9 27 106-132 228-259 (262)
93 1uzc_A Hypothetical protein FL 24.7 59 0.002 26.9 3.6 34 382-415 6-39 (71)
94 2x3d_A SSO6206; unknown functi 24.1 76 0.0026 27.9 4.2 41 188-233 45-85 (96)
95 1k82_A Formamidopyrimidine-DNA 22.0 34 0.0012 35.6 2.0 28 105-132 233-265 (268)
96 2k4x_A 30S ribosomal protein S 21.8 28 0.00096 27.5 0.9 21 111-131 18-40 (55)
97 2xzf_A Formamidopyrimidine-DNA 21.7 35 0.0012 35.5 2.0 28 105-132 235-267 (271)
98 3bpd_A Uncharacterized protein 20.6 81 0.0028 27.9 3.7 41 188-233 46-86 (100)
99 1ee8_A MUTM (FPG) protein; bet 20.5 39 0.0013 35.2 2.0 28 105-132 228-260 (266)
100 2nuw_A 2-keto-3-deoxygluconate 20.1 1.6E+02 0.0054 30.6 6.7 55 455-509 222-282 (288)
No 1
>4dqy_C Poly [ADP-ribose] polymerase 1; PARP, poly(ADP-ribose) polymerase, DNA binding protein, ADP- transferase, PARP-like zinc finger, poly(ADP-ribosyl)ation; HET: DNA; 3.25A {Homo sapiens} PDB: 2cr9_A
Probab=100.00 E-value=4.5e-125 Score=1073.88 Aligned_cols=486 Identities=30% Similarity=0.520 Sum_probs=431.2
Q ss_pred HHHHHHHHhcCccCCCCCccccCCceEEEeCCeEEEEEEeeecCCCCcccEEEEEEEEcCC-CCeEEEEEeeccCCCCcc
Q 037230 302 SIAAELKLYGKRGVYKDTKLQEQGGKILEKDGILYNCAFSLCDQGRGMNLYCIVQLITVPD-SNLHLYYKKGKVGDDPNA 380 (815)
Q Consensus 302 s~~~k~k~kg~~~Vd~~s~l~~~~~hVy~d~~~~Y~~~L~~tDi~~~~NkfY~lQlle~~~-~~y~vf~~wGRVG~~~~g 380 (815)
++++++++||+++|||+|++.+ ++|||+++|.+|+|+|+++|+++|+|+||+|||++++. +.|+||++|||||+.+ |
T Consensus 4 ~~~~~~~~kg~~~Vd~~~~~~~-~~~Vy~~~~~~Y~~~L~~td~~~n~NkfY~lQll~~~~~~~y~v~~rWGRVG~~~-G 81 (506)
T 4dqy_C 4 EKRMKLTLKGGAAVDPDSGLEH-SAHVLEKGGKVFSATLGLVDIVKGTNSYYKLQLLEDDKENRYWIFRSWGRVGTVI-G 81 (506)
T ss_dssp -----------CCCCGGGSCTT-TSCCCEETTEESEEEEEEECTTTCCEEEEEEECC--------CEEEEEEETTSSC-E
T ss_pred CceEEEEEeCCeecCCccCCCC-ceEEEEeCCeEEEEEEEcccccCCCcceEEEEEEEcCCCCEEEEEEEECccCccc-c
Confidence 3578899999999999999986 99999999999999999999999999999999999876 8899999999999964 7
Q ss_pred cccccCCCCHHHHHHHHHHHHHHHhcCCCccccccccCccCCCCccccccCCccccccCCCCcccccccCCCCCCCHHHH
Q 037230 381 EERLEEWTGVDNAIKEFVRLFEEVTGNEFEPWEREKKFQKKPLKFYPIDMDDGVEVRHGGLGMRQLGVAAAHSKLDPVVA 460 (815)
Q Consensus 381 ~~k~~~~~s~e~Ai~~F~k~F~eKTgn~w~~w~~r~~f~k~pgKy~~v~~d~~~~~~~~~~~~~~~~~~~~~s~L~~~Vq 460 (815)
++++++|+++++|+++|+++|++||||+| ++| +|+++||||+||++||+.+++... .+. .....+|+|+++||
T Consensus 82 q~~l~~~~s~~~Ai~~F~k~F~~KTgn~W---~~R-~f~k~pgKy~~ve~d~~~~~~~~~-~~~--~~~~~~s~L~~~Vq 154 (506)
T 4dqy_C 82 SNKLEQMPSKEDAIEHFMKLYEEKTGNAW---HSK-NFTKYPKKFYPLEIDYGQDEEAVK-KLT--VNPGTKSKLPKPVQ 154 (506)
T ss_dssp EEEEECCSCSHHHHHHHHHHHHHHHSSCS---SCS-SCCCCTTCCEEECBC--------------------CCCSCHHHH
T ss_pred cceeccCCCHHHHHHHHHHHHHHHhcCCc---ccc-CccccCCccceeecccccchhhhh-hhc--ccCCCCCCCCHHHH
Confidence 89999999999999999999999999965 778 999999999999999986433211 111 12457899999999
Q ss_pred HHHHHHhCHHHHHHHHHHccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhccccccCC--
Q 037230 461 NFMKVLCSQEVYRYALMEMGLDAPDLPIGMLSNVHLNRCEEVLQQFIEAVKSTKETGQKAEAIWTDFSNRWFTLMHSL-- 538 (815)
Q Consensus 461 ~Li~~I~d~~~~~~~~~e~~~d~~k~PLGkLS~~qI~~a~~vL~ei~~~l~~~~~~~~~~~~~l~~lsn~fYtlIPh~-- 538 (815)
+||++|||+++|+++|++|++|+.+||||+||++||.+||+||.+|+++|++.. ..+.+.+|||+|||+|||+
T Consensus 155 ~Li~lIfd~~~~~~~m~~~~~D~~k~PLGkLS~~qI~~g~~vL~~i~~~l~~~~-----~~~~l~~lsn~fYtlIPh~fg 229 (506)
T 4dqy_C 155 DLIKMIFDVESMKKAMVEYEIDLQKMPLGKLSKRQIQAAYSILSEVQQAVSQGS-----SDSQILDLSNRFYTLIPHDFG 229 (506)
T ss_dssp HHHHHHSCHHHHHHHHHTTTBCCSSTTTSCBCHHHHHHHHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHSCBCCT
T ss_pred HHHHHHhHHHHHHHHHHHhCCChhhCCCccCCHHHHHHHHHHHHHHHHHHhccc-----cHHHHHHHHhhhhEeCCcccc
Confidence 999999999999999999999999999999999999999999999999998653 3468999999999999997
Q ss_pred --CCccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCcchhhhhhcCceeEEcCCCCHHHHHHHHHHHhccCC
Q 037230 539 --RPFIFRDNQEIADHAASSFEAVRDITVASHLIGDMSGSTLDDPLSDCYEKLACSISALEKDSDDYKMIVNYLEKTYEP 616 (815)
Q Consensus 539 --~p~~i~~~~~l~~k~~~lle~L~die~A~~ll~~~~~~~~~~pld~~Y~~L~~~i~~L~~~s~ey~~I~~y~~~t~~~ 616 (815)
+||+|++.++|++|+ +||++|.||++|++|+++.......||+|.+|++|+|+|++|+++|+||++|++||++|+++
T Consensus 230 ~~~pp~i~~~~~l~~k~-~ll~~L~dieiA~~l~~~~~~~~~~~pld~~Y~~L~~~l~~L~~~s~Ey~~I~~~~~~T~~~ 308 (506)
T 4dqy_C 230 MKKPPLLNNADSVQAKA-EMLDNLLDIEVAYSLLRGGSDDSSKDPIDVNYEKLKTDIKVVDRDSEEAEIIRKYVKNTHAT 308 (506)
T ss_dssp TSCCCCCCSHHHHHHHH-HHHHHHHHHHHHHHHHSCSCCCTTSCHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHTCCS
T ss_pred CCCCCccCCHHHHHHHH-HHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHhCcEEEECCCCChHHHHHHHHHHhccCc
Confidence 899999999999999 99999999999999997643446789999999999999999999999999999999999999
Q ss_pred CccCCcccccccceeeeEecCC-ccchhhhhcCCCceeeeccCCccchhhhcccCCCCCCCCCCCCCceeeeeeeechhh
Q 037230 617 VKLGDIEYGVSVDNIFVIESNA-QPSLDEIKKLPNKVLLWCGTRSSNLLRHLQKGFLPASCSLPVPGYMFGRAIVCSDAA 695 (815)
Q Consensus 617 ~h~~~~~~~~~I~~If~v~r~~-~~~f~~~~~~~N~~lLwHGSr~~N~~gIL~~Gl~iap~~a~~tG~mFGkGIYFAd~~ 695 (815)
+| ..|+++|++||||+|++ +++|+++++++|+++||||||.+||++||++||+++|++++.+|+|||+|||||+++
T Consensus 309 ~h---~~~~~~I~~I~rI~~~~e~~~f~~~k~~~N~~lL~HGT~~~n~~~Il~~Gf~~~~~~a~~~G~~fGkGiYFA~~a 385 (506)
T 4dqy_C 309 TH---NAYDLEVIDIFKIEREGECQRYKPFKQLHNRRLLWHGSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIYFADMV 385 (506)
T ss_dssp SC---TTCCCCEEEEEEEEETTTTTTTHHHHSSSCEEEEEEECCTTTHHHHHHHCSCCCCSSSCCTTCSSCSSEEEBSSH
T ss_pred cc---ccCCceeEeEEEEccHHHHhhHHHhhcCCCceEEecCCChHhHHHHHhcCCCcCCccCCcCCceeeeeEEecchh
Confidence 99 67899999999999999 999999989999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccccCCCCCceEEEEEEEecCCcceeccCCCCcCccCCCCCcceeeeccccCCCCCceeecCCeEecCCCcccCC
Q 037230 696 AEAARYGFTAADRPEGFLVLAVASLGDQVTELKKPPEDTKSLEDKKLGVKGLGRKKTDESEHFFWNDDIKVPGGRLIPSE 775 (815)
Q Consensus 696 skS~~Yc~~~~~~~~~~mlLceVaLG~~~~e~~~~~~~~~~~p~G~~Sv~g~G~~~Pdp~~~~~~~dgv~vP~G~~~~~~ 775 (815)
|||++||+++..++.++||||+||||+ ++++..+ .++++||+|||||+|+|++.|||++. ++.|||.||+|+++++.
T Consensus 386 skS~~Y~~~~~~~~~~~mll~~V~lG~-~~~~~~~-~~~~~~p~G~dSv~g~g~~~P~p~~~-~~~dGv~vP~G~~~~~~ 462 (506)
T 4dqy_C 386 SKSANYCHTSQGDPIGLILLGEVALGN-MYELKHA-SHISKLPKGKHSVKGLGKTTPDPSAN-ISLDGVDVPLGTGISSG 462 (506)
T ss_dssp HHHHTTSCCCSSSCEEEEEEEEEECCS-EEEESSC-CCCSSCCTTCCEEEECCSEEECGGGC-EESSSCEECCCCEEECS
T ss_pred hccccccCCCCCCCeEEEEEEEEecCC-ceecccc-hhhhccCCCCceEEeCCcCcCCcccc-cccCCeEEECCCcccCC
Confidence 999999999877889999999999999 9999988 57999999999999999999999998 88999999999999988
Q ss_pred CCCCCCCCceEEEecCCCcceeeEEEEEecccc
Q 037230 776 HKNSPLEYNEYAVYDPKQTSIRFLVGVKFEERG 808 (815)
Q Consensus 776 ~~~~~l~ynEyIVYd~~Qv~~rYLv~~~~~~~~ 808 (815)
..+++|.||||||||++||||||||+|+|+|+.
T Consensus 463 ~~~~~l~ynEyiVYd~~Qir~rYLv~v~~~~~~ 495 (506)
T 4dqy_C 463 VNDTSLLYNEYIVYDIAQVNLKYLLKLKFNFKT 495 (506)
T ss_dssp CCCCSCSBCEEEESSGGGEEEEEEEEEECCCCC
T ss_pred CCCCcccccceEEEchHHeeEEEEEEEEEEcch
Confidence 888999999999999999999999999999986
No 2
>3kjd_A Poly [ADP-ribose] polymerase 2; transferase, enzyme-inhibitor complex, catalytic fragment, S genomics, structural genomics consortium, SGC; HET: 78P; 1.95A {Homo sapiens} PDB: 3kcz_A* 1gs0_A
Probab=100.00 E-value=6.1e-92 Score=771.74 Aligned_cols=344 Identities=26% Similarity=0.510 Sum_probs=321.4
Q ss_pred cCCCCCCCHHHHHHHHHHhCHHHHHHHHHHccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHhh
Q 037230 449 AAAHSKLDPVVANFMKVLCSQEVYRYALMEMGLDAPDLPIGMLSNVHLNRCEEVLQQFIEAVKSTKETGQKAEAIWTDFS 528 (815)
Q Consensus 449 ~~~~s~L~~~Vq~Li~~I~d~~~~~~~~~e~~~d~~k~PLGkLS~~qI~~a~~vL~ei~~~l~~~~~~~~~~~~~l~~ls 528 (815)
...+|+|+++||+||++|||+++|+++|++|++|+.+||||+||+.||++||+||.+|+++|++.. ..+.+.+||
T Consensus 17 ~~~~skL~~~vq~li~lIfd~~~~~~~m~~~~~D~~k~PLGkLSk~qI~~g~~vL~~i~~~l~~~~-----~~~~l~~ls 91 (368)
T 3kjd_A 17 NLYFQSMDLRVQELIKLICNVQAMEEMMMEMKYNTKKAPLGKLTVAQIKAGYQSLKKIEDCIRAGQ-----HGRALMEAC 91 (368)
T ss_dssp HHHHCCCCHHHHHHHHHHTCHHHHHHHHHHTTBCTTTSCGGGCCHHHHHHHHHHHHHHHHHHHTTC-----CSHHHHHHH
T ss_pred ccccccCCHHHHHHHHHHhCHHHHHHHHHHcCCCcccCCccccCHHHHHHHHHHHHHHHHHHhccc-----chHHHHHHH
Confidence 345789999999999999999999999999999999999999999999999999999999998753 235799999
Q ss_pred hhccccccCC----CCccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCcchhhhhhcCceeEEcCCCCHHHH
Q 037230 529 NRWFTLMHSL----RPFIFRDNQEIADHAASSFEAVRDITVASHLIGDMSGSTLDDPLSDCYEKLACSISALEKDSDDYK 604 (815)
Q Consensus 529 n~fYtlIPh~----~p~~i~~~~~l~~k~~~lle~L~die~A~~ll~~~~~~~~~~pld~~Y~~L~~~i~~L~~~s~ey~ 604 (815)
|+|||+|||+ +||+|+|.++|++|+ +|||+|.||++|++|++... ....||+|++|++|+|+|++|+++|+||+
T Consensus 92 n~fYtlIPh~fg~~~pp~I~~~~~l~~k~-~lle~L~dieiA~~l~~~~~-~~~~~pld~~Y~~L~~~l~~L~~~s~Ey~ 169 (368)
T 3kjd_A 92 NEFYTRIPHDFGLRTPPLIRTQKELSEKI-QLLEALGDIEIAIKLVKTEL-QSPEHPLDQHYRNLHCALRPLDHESYEFK 169 (368)
T ss_dssp HHHHHHSCBCCTTSCCCCCCSHHHHHHHH-HHHHHHHHHHHHHHHHC-----CCSCHHHHHHHHHTEEEEECCTTSHHHH
T ss_pred hhhhhhCCccccCCCCCccCCHHHHHHHH-HHHHHHHHHHHHHHHHHhcc-CCCCChhhHHHHhcCcEEEEcCCCChHHH
Confidence 9999999997 799999999999999 99999999999999997532 34689999999999999999999999999
Q ss_pred HHHHHHHhccCCCccCCcccccccceeeeEecCC-ccchhhhhcCCCceeeeccCCccchhhhcccCCCCCCCCCCCCCc
Q 037230 605 MIVNYLEKTYEPVKLGDIEYGVSVDNIFVIESNA-QPSLDEIKKLPNKVLLWCGTRSSNLLRHLQKGFLPASCSLPVPGY 683 (815)
Q Consensus 605 ~I~~y~~~t~~~~h~~~~~~~~~I~~If~v~r~~-~~~f~~~~~~~N~~lLwHGSr~~N~~gIL~~Gl~iap~~a~~tG~ 683 (815)
+|++||++|++++| ..|+++|++||||+|.+ +++|+ ++++|+++|||||+.+||++||++||+++|++++.+|+
T Consensus 170 ~I~~y~~~T~~~~h---~~~~~~I~~IfrI~r~~e~~~F~--k~~~N~~lLwHGT~~~n~~~Il~~Gf~~~~~~~~~~g~ 244 (368)
T 3kjd_A 170 VISQYLQSTHAPTH---SDYTMTLLDLFEVEKDGEKEAFR--EDLHNRMLLWHGSRMSNWVGILSHGLRIAHPEAPITGY 244 (368)
T ss_dssp HHHHHHHHTCCTTC---TTCEEEEEEEEEEEETTHHHHSC--TTCSCEEEEEEECCGGGHHHHHHHCSCCCCTTSCGGGS
T ss_pred HHHHHHHhcCCccc---CcCceeEEEEEEecchHHHHHHh--hcCCCceEEEeCCCHHHHHHHHHcCCCcccccccccCc
Confidence 99999999999999 67899999999999999 99998 68999999999999999999999999999999999999
Q ss_pred eeeeeeeechhhhhhhcccccCCCCCceEEEEEEEecCCcceeccCCCCcCccCCCCCcceeeeccccCCCCCceeecCC
Q 037230 684 MFGRAIVCSDAAAEAARYGFTAADRPEGFLVLAVASLGDQVTELKKPPEDTKSLEDKKLGVKGLGRKKTDESEHFFWNDD 763 (815)
Q Consensus 684 mFGkGIYFAd~~skS~~Yc~~~~~~~~~~mlLceVaLG~~~~e~~~~~~~~~~~p~G~~Sv~g~G~~~Pdp~~~~~~~dg 763 (815)
|||+|||||+++|||++||.++..++.++||||+|+||+ +++++.++..+++||+|||||+|+|++.|+|++++++ ||
T Consensus 245 ~fGkGIYFA~~~skS~~Y~~~~~~~~~~~mlLc~V~lG~-~~~~~~~~~~~~~pP~G~dSv~g~G~~~P~~~~~~~~-dg 322 (368)
T 3kjd_A 245 MFGKGIYFADMSSKSANYCFASRLKNTGLLLLSEVALGQ-CNELLEANPKAEGLLQGKHSTKGLGKMAPSSAHFVTL-NG 322 (368)
T ss_dssp TTCSSEEEBSSHHHHHHTTCCCSSSCEEEEEEEEEECCS-EEEESSCCTTGGGGCTTCCEEEECEEEEECGGGCEEE-TT
T ss_pred eeeeEEEccccccccccccCCCCCCCeEEEEEEEEecCC-ceeccccCcccccCCCCCceEEeeCCCcCCccccccc-CC
Confidence 999999999999999999998777889999999999999 8999988777899999999999999999999999999 99
Q ss_pred eEecCCCcccCCCCC---CCCCCceEEEecCCCcceeeEEEEEecc
Q 037230 764 IKVPGGRLIPSEHKN---SPLEYNEYAVYDPKQTSIRFLVGVKFEE 806 (815)
Q Consensus 764 v~vP~G~~~~~~~~~---~~l~ynEyIVYd~~Qv~~rYLv~~~~~~ 806 (815)
|.||+|++++++..+ .+|.||||||||++||||||||+|+|+|
T Consensus 323 v~vP~G~~~~~~~~~~~~~~L~ynEyIVYd~~Qir~rYLv~v~~~~ 368 (368)
T 3kjd_A 323 STVPLGPASDTGILNPDGYTLNYNEYIVYNPNQVRMRYLLKVQFNF 368 (368)
T ss_dssp EEECCSCEEECCCCCSSSCCEEECEEEESSGGGEEEEEEEEEEEEC
T ss_pred EEeeCCCcccCCCCCCcCccccCCceEEechhHeeEEEEEEEEeEC
Confidence 999999999876533 3799999999999999999999999986
No 3
>1efy_A Poly (ADP-ribose) polymerase; benzimidazole, inhibitor, catalytic fragment, transferase; HET: BZC; 2.20A {Gallus gallus} SCOP: a.41.1.1 d.166.1.2 PDB: 1a26_A* 1pax_A* 2paw_A 2pax_A* 3pax_A* 4pax_A* 2rcw_A* 1uk1_A* 1wok_A* 1uk0_A* 2rd6_A* 3gjw_A* 3gn7_A* 3l3l_A* 3l3m_A*
Probab=100.00 E-value=8.5e-89 Score=748.13 Aligned_cols=345 Identities=31% Similarity=0.512 Sum_probs=326.2
Q ss_pred CCCCCHHHHHHHHHHhCHHHHHHHHHHccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHhhhhc
Q 037230 452 HSKLDPVVANFMKVLCSQEVYRYALMEMGLDAPDLPIGMLSNVHLNRCEEVLQQFIEAVKSTKETGQKAEAIWTDFSNRW 531 (815)
Q Consensus 452 ~s~L~~~Vq~Li~~I~d~~~~~~~~~e~~~d~~k~PLGkLS~~qI~~a~~vL~ei~~~l~~~~~~~~~~~~~l~~lsn~f 531 (815)
+|+|+++||+||++|||+++|+++|++|++|+.+||||+||++||++||+||.+|+++|++.. .++.|.+|||+|
T Consensus 1 ~s~L~~~v~~li~~i~~~~~~~~~~~~~~~d~~k~PlGkLs~~qi~~~~~vL~~i~~~l~~~~-----~~~~l~~ls~~f 75 (350)
T 1efy_A 1 KSKLAKPIQDLIKMIFDVESMKKAMVEFEIDLQKMPLGKLSKRQIQSAYSILNEVQQAVSDGG-----SESQILDLSNRF 75 (350)
T ss_dssp CCCSCHHHHHHHHHHTCHHHHHHHHHHTTBCTTTSCGGGCCHHHHHHHHHHHHHHHHHHHTTC-----CHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCHHHHHHHHHHcCCCcccCCcccCCHHHHHHHHHHHHHHHHHHhccc-----chHHHHHHHHhH
Confidence 489999999999999999999999999999999999999999999999999999999998754 357899999999
Q ss_pred cccccCC----CCccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCcchhhhhhcCceeEEcCCCCHHHHHHH
Q 037230 532 FTLMHSL----RPFIFRDNQEIADHAASSFEAVRDITVASHLIGDMSGSTLDDPLSDCYEKLACSISALEKDSDDYKMIV 607 (815)
Q Consensus 532 YtlIPh~----~p~~i~~~~~l~~k~~~lle~L~die~A~~ll~~~~~~~~~~pld~~Y~~L~~~i~~L~~~s~ey~~I~ 607 (815)
||+|||+ +||+|++.++|++|+ +|||+|.||++|++|++........||+|++|++|+|+|++|+++|+||++|+
T Consensus 76 yt~IPh~fg~~~p~~i~~~~~l~~k~-~lle~L~die~A~~l~~~~~~~~~~~pld~~y~~L~~~l~~L~~~s~Ey~~I~ 154 (350)
T 1efy_A 76 YTLIPHDFGMKKPPLLSNLEYIQAKV-QMLDNLLDIEVAYSLLRGGNEDGDKDPIDINYEKLRTDIKVVDKDSEEAKIIK 154 (350)
T ss_dssp HHHSCBCCCSSCCCCSCSHHHHHHHH-HHHHHHHHHHHHHHHHHSCCCCSSSCHHHHHHHHTCEEEEECCTTSHHHHHHH
T ss_pred HhhcCccccCCCCCccCCHHHHHHHH-HHHHHHHHHHHHHHHHhhcccCCCCChhHHHHHHhCCEEEEcCCCChHHHHHH
Confidence 9999996 899999999999999 99999999999999997643344489999999999999999999999999999
Q ss_pred HHHHhccCCCccCCcccccccceeeeEecCC-ccchhhhhcCCCceeeeccCCccchhhhcccCCCCCCCCCCCCCceee
Q 037230 608 NYLEKTYEPVKLGDIEYGVSVDNIFVIESNA-QPSLDEIKKLPNKVLLWCGTRSSNLLRHLQKGFLPASCSLPVPGYMFG 686 (815)
Q Consensus 608 ~y~~~t~~~~h~~~~~~~~~I~~If~v~r~~-~~~f~~~~~~~N~~lLwHGSr~~N~~gIL~~Gl~iap~~a~~tG~mFG 686 (815)
+||.+|++++| ..++++|.+||||+|++ +++|..+++.+|+++||||||.+||.+||++||+++|++++.+|+|||
T Consensus 155 ~~~~~t~~~~h---~~~~~~I~~I~rV~~~~~~~~f~~~k~~~n~~~L~HGt~~~n~~~Il~~Gf~~~~~~~~~~g~~fG 231 (350)
T 1efy_A 155 QYVKNTHAATH---NAYDLKVVEIFRIEREGESQRYKPFKQLHNRQLLWHGSRTTNFAGILSQGLRIAPPEAPVTGYMFG 231 (350)
T ss_dssp HHHHHTCCGGG---CSEEEEEEEEEEEEETTHHHHHGGGGGSSCEEEEEEEECGGGHHHHHHHCSCCCCTTSCGGGSTTS
T ss_pred HHHhcccCCCC---CCCcccccceEEecCHHHHHHHHHhhccCCeeEEEeCCchHHHHHHHHcCCCcccccCCCccCcee
Confidence 99999999888 56889999999999999 999998889999999999999999999999999999999999999999
Q ss_pred eeeeechhhhhhhcccccCCCCCceEEEEEEEecCCcceeccCCCCcCccCCCCCcceeeeccccCCCCCceeecCCeEe
Q 037230 687 RAIVCSDAAAEAARYGFTAADRPEGFLVLAVASLGDQVTELKKPPEDTKSLEDKKLGVKGLGRKKTDESEHFFWNDDIKV 766 (815)
Q Consensus 687 kGIYFAd~~skS~~Yc~~~~~~~~~~mlLceVaLG~~~~e~~~~~~~~~~~p~G~~Sv~g~G~~~Pdp~~~~~~~dgv~v 766 (815)
+|||||+++|||++||.++..++.++||||+|+||+ +.++..+ .++.+||+|+|||+|+|++.|||++ ..+.|||.|
T Consensus 232 ~GiYfa~~~skS~~Y~~~~~~~~~~~m~Lc~V~lG~-~~~~~~~-~~~~~~p~g~~Sv~g~g~~~Pd~~~-~~~~dgv~v 308 (350)
T 1efy_A 232 KGIYFADMVSKSANYCHTSQADPIGLILLGEVALGN-MYELKNA-SHITKLPKGKHSVKGLGKTAPDPTA-TTTLDGVEV 308 (350)
T ss_dssp SSEEEBSSHHHHHGGGCCCSSSCEEEEEEEEEECCS-EEEESSC-CCCCSCCTTCCEEEECCSEEECGGG-CEEETTEEE
T ss_pred cccccccchhhhhccccCCCCCCeEEEEEEEEecCC-ceeccCc-chhhhcCCCCcceeeccccCCCccc-cccCCCeee
Confidence 999999999999999998777889999999999999 8999888 4599999999999999999999998 778999999
Q ss_pred cCCCcccCCCCCCCCCCceEEEecCCCcceeeEEEEEecccc
Q 037230 767 PGGRLIPSEHKNSPLEYNEYAVYDPKQTSIRFLVGVKFEERG 808 (815)
Q Consensus 767 P~G~~~~~~~~~~~l~ynEyIVYd~~Qv~~rYLv~~~~~~~~ 808 (815)
|+|+++++...+++|.||||||||++||+|+|||+|+|+|+.
T Consensus 309 P~G~~~~~~~~~~~l~~~EyVVYd~~Qi~p~YLI~~~~~~~~ 350 (350)
T 1efy_A 309 PLGNGISTGINDTCLLYNEYIVYDVAQVNLKYLLKLKFNYKT 350 (350)
T ss_dssp CCSCEEECSCCSSSCSBCEEEESCGGGEEEEEEEEEEEEECC
T ss_pred ecCcccCCCCCCCCCCCCEEEEEchhheeEEEEEEEEEEecC
Confidence 999999887777899999999999999999999999999873
No 4
>3c4h_A Poly(ADP-ribose) polymerase 3; enzyme-inhibitor complex, catalytic fragment, structural GEN structural genomics consortium, SGC; HET: DRL; 2.10A {Homo sapiens} PDB: 3c49_A* 2pa9_A* 3ce0_A* 3fhb_A*
Probab=100.00 E-value=4.1e-82 Score=697.28 Aligned_cols=339 Identities=22% Similarity=0.391 Sum_probs=309.6
Q ss_pred cCCCCCCCHHHHHHHHHHhCHHHHHHHHHHccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHhh
Q 037230 449 AAAHSKLDPVVANFMKVLCSQEVYRYALMEMGLDAPDLPIGMLSNVHLNRCEEVLQQFIEAVKSTKETGQKAEAIWTDFS 528 (815)
Q Consensus 449 ~~~~s~L~~~Vq~Li~~I~d~~~~~~~~~e~~~d~~k~PLGkLS~~qI~~a~~vL~ei~~~l~~~~~~~~~~~~~l~~ls 528 (815)
...+|+|+++||+||++|||+++|+++|++|++|+.+||||+||++||++||+||.+|+++|++.... ...|.+||
T Consensus 4 ~~~~s~L~~~v~~li~~i~~~~~~~~~~~~~~~d~~k~PlGkLs~~qi~~g~~vL~~i~~~l~~~~~~----~~~~~~ls 79 (357)
T 3c4h_A 4 RVQPCSLDPATQKLITNIFSKEMFKNTMALMDLDVKKMPLGKLSKQQIARGFEALEALEEALKGPTDG----GQSLEELS 79 (357)
T ss_dssp EECCCCSCHHHHHHHHHHTCHHHHHHHHHHTTBCTTTSCTTTCCHHHHHHHHHHHHHHHHHHTSCCCS----CCCHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHhCHHHHHHHHHHcCCCcccCCcccCCHHHHHHHHHHHHHHHHHHhccccc----hHHHHHHH
Confidence 35689999999999999999999999999999999999999999999999999999999999875432 23489999
Q ss_pred hhccccccCC----CCccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC----CCCCcchhhhhhcCceeEEcCCCC
Q 037230 529 NRWFTLMHSL----RPFIFRDNQEIADHAASSFEAVRDITVASHLIGDMSGS----TLDDPLSDCYEKLACSISALEKDS 600 (815)
Q Consensus 529 n~fYtlIPh~----~p~~i~~~~~l~~k~~~lle~L~die~A~~ll~~~~~~----~~~~pld~~Y~~L~~~i~~L~~~s 600 (815)
|+|||+|||+ +||+|+|.+.|++|+ +|||+|.||++|++|++..... ...||+|++|++|+|+|++|+++|
T Consensus 80 ~~fyt~IPh~fg~~~p~~i~~~~~l~~k~-~lle~l~di~~a~~l~~~~~~~~~~~~~~~pld~~y~~L~~~l~~L~~~s 158 (357)
T 3c4h_A 80 SHFYTVIPHNFGHSQPPPINSPELLQAKK-DMLLVLADIELAQALQAVSEQEKTVEEVPHPLDRDYQLLKCQLQLLDSGA 158 (357)
T ss_dssp HHHHHHSCBCSTTSCCCCCCSHHHHHHHH-HHHHHHHHHHHHHHHHCCCHHHHHCSEECCHHHHHHHHHCCEEEECCTTS
T ss_pred HHHHhhcCcccCCCCCCccCCHHHHHHHH-HHHHHHHHHHHHHHHHhhhccccccCCCCChhHHHHHHhCCEEEECCCCC
Confidence 9999999996 899999999999999 9999999999999999653111 127999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCccCCcccccccceeeeEecCC-ccchhhhhcCCCceeeeccCCccchhhhcccCCCCCCCCCC
Q 037230 601 DDYKMIVNYLEKTYEPVKLGDIEYGVSVDNIFVIESNA-QPSLDEIKKLPNKVLLWCGTRSSNLLRHLQKGFLPASCSLP 679 (815)
Q Consensus 601 ~ey~~I~~y~~~t~~~~h~~~~~~~~~I~~If~v~r~~-~~~f~~~~~~~N~~lLwHGSr~~N~~gIL~~Gl~iap~~a~ 679 (815)
+||++|++||.+| +++| . .++|.+||+|+|++ +++|..+++.+|+++|||||+.+|+.+||++||+++|+
T Consensus 159 ~Ey~~I~~~f~~t-~~~~---~--~~~I~~I~rV~n~~~~~rF~~~k~~~n~~~LfHGt~~~~~~~I~~~Gf~~~~~--- 229 (357)
T 3c4h_A 159 PEYKVIQTYLEQT-GSNH---R--CPTLQHIWKVNQEGEEDRFQAHSKLGNRKLLWHGTNMAVVAAILTSGLRIMPH--- 229 (357)
T ss_dssp TTHHHHHHHHHHH-SCSS---S--CCCEEEEEEEECTTSHHHHHTTTTCCCEEEEEEEECHHHHHHHHHHCSCCCTT---
T ss_pred hHHHHHHHHHHhc-CCCC---C--CccEEEEEEecCHHHHHHHHHHhccCCeEEEEeCCChhhHHHHHHcCCcccCC---
Confidence 9999999999999 7776 2 28999999999999 99999888899999999999999999999999998765
Q ss_pred CCCceeeeeeeechhhhhhhcccc--cCCCCCceEEEEEEEecCCcceeccCCCCcCccCCCCCcceeeeccccCCCCCc
Q 037230 680 VPGYMFGRAIVCSDAAAEAARYGF--TAADRPEGFLVLAVASLGDQVTELKKPPEDTKSLEDKKLGVKGLGRKKTDESEH 757 (815)
Q Consensus 680 ~tG~mFGkGIYFAd~~skS~~Yc~--~~~~~~~~~mlLceVaLG~~~~e~~~~~~~~~~~p~G~~Sv~g~G~~~Pdp~~~ 757 (815)
+|+|||+|||||++++||++||. ++..++.++||||+|+||+ ++++..++..+.+||+|+|||+|+|++.|||+.+
T Consensus 230 -~g~~fG~GiYfa~~~skS~~Y~~~~~~~~~~~~~mllc~V~lG~-~~~~~~~~~~~~~pP~g~dSv~g~g~~~P~~~~~ 307 (357)
T 3c4h_A 230 -SGGRVGKGIYFASENSKSAGYVIGMKCGAHHVGYMFLGEVALGR-EHHINTDNPSLKSPPPGFDSVIARGHTEPDPTQD 307 (357)
T ss_dssp -CCCTTCSSEEEBSSHHHHHTTCCCEEETTEEEEEEEEEEEECCS-EEEESSCCTTCSSCCTTCSEEEECCSEEECGGGC
T ss_pred -CCCceECCEecCCcchhhhhhcccCCCCCCCeEEEEEEEEecCC-ceeccCCchhccCCCCCCCccceecCCCCCcccc
Confidence 89999999999999999999999 6555678999999999999 9999888666889999999999999999999999
Q ss_pred eeec-CC--eEecCCCcccCC-CCCCCCCCceEEEecCCCcceeeEEEEE
Q 037230 758 FFWN-DD--IKVPGGRLIPSE-HKNSPLEYNEYAVYDPKQTSIRFLVGVK 803 (815)
Q Consensus 758 ~~~~-dg--v~vP~G~~~~~~-~~~~~l~ynEyIVYd~~Qv~~rYLv~~~ 803 (815)
+.++ || |.||+|+++++. ..+++|.||||||||++||+|||||+|+
T Consensus 308 ~~~~~dg~~v~vp~G~~v~~~~~~~~~l~~nEyVVYd~~Qv~p~YLi~~k 357 (357)
T 3c4h_A 308 TELELDGQQVVVPQGQPVPCPEFSSSTFSQSEYLIYQESQCRLRYLLEVH 357 (357)
T ss_dssp EEEEETTEEEEECCSCEEECGGGTTCSCSBCEEEESSGGGEEEEEEEEEC
T ss_pred eeeccCCCeEEecCCCcccCCCCCCCccCCCEEEEEchhheeEEEEEEEC
Confidence 8886 99 999999988653 3568899999999999999999999985
No 5
>2riq_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn finger, ADP-ribosylation, D damage, DNA repair, DNA-binding, glycosyltransferase; 1.70A {Homo sapiens} PDB: 2jvn_A
Probab=100.00 E-value=4.9e-41 Score=325.82 Aligned_cols=137 Identities=24% Similarity=0.441 Sum_probs=119.6
Q ss_pred ccccccccCCCCCCccccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhhhcCCCCCCCCC
Q 037230 38 PKKTKQENNGNGGHANGKRSGDVTAEFEEFCKSIEGQLSAEQMREILELNGQDSSGSDVAVVTKCLDMLFYGPLDKCPVC 117 (815)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~k~q~~~lw~~~d~l~~~~~~~~l~~lL~~N~q~~~~~~~~ll~~~aD~~~fG~l~~Cp~C 117 (815)
.+|.|.|. .++.+++ .+|++|+++||+|||+|+++|+.++|++||++|+|.++|+++.||+||||||+||+|++||.|
T Consensus 7 ~kk~k~e~-~~~~~~~-~~lk~Q~~~lw~~rD~L~~~ls~~eLk~lL~~N~q~~~g~~~~ll~r~ADgm~FGal~~CP~C 84 (160)
T 2riq_A 7 KKKSKKEK-DKDSKLE-KALKAQNDLIWNIKDELKKVCSTNDLKELLIFNKQQVPSGESAILDRVADGMVFGALLPCEEC 84 (160)
T ss_dssp ----CHHH-HHHHHHH-HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHHHCEECCCTTT
T ss_pred hhhcccCc-cccHHHH-HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCCCCCCC
Confidence 34444444 2244554 459999999999999999899999999999999999999999999999999999999999999
Q ss_pred CCeeEEeCceeEeecCCcCccccccccCCCCCCCCCccCCcccCCc-ccchhhcccCCCCCCC
Q 037230 118 NGNLEFDGKRYSCKGMYSEWSTCTFRTKDPPRKQEPTKLPDSVLNS-PISDLAKRYQDPSHRP 179 (815)
Q Consensus 118 ~g~l~~~~~~Y~C~G~~sewtkC~~~~~~p~R~~~~~kiP~~~~~~-fl~~~~~~~~~~~~~p 179 (815)
+|+|+|++++|+|+||+||||+|+|++++|+|. ||+||+++++. ||++|++++++ |++|
T Consensus 85 ~G~l~y~~~~Y~C~G~isewtkC~~~t~~p~R~--pwkiP~~lk~~~fL~~~k~~~~~-Ri~~ 144 (160)
T 2riq_A 85 SGQLVFKSDAYYCTGDVTAWTKCMVKTQTPNRK--EWVTPKEFREISYLKKLKVKKQD-RIFP 144 (160)
T ss_dssp CCCEEEETTEEEECCEEETTEECCCEESSCCEE--CCCCCHHHHTHHHHHHTCCCCCC-CCCC
T ss_pred CCEEEEeCCeEEECCCCCCcccCcccCCCCCcc--CccCCHHHHhhHHHHhCCCCCcc-cccC
Confidence 999999999999999999999999999999998 99999999986 99999995444 4444
No 6
>2x5y_A Zinc finger CCCH-type antiviral protein 1; antiviral defense, immune system, transferase; 1.05A {Homo sapiens}
Probab=100.00 E-value=1.2e-37 Score=311.04 Aligned_cols=166 Identities=11% Similarity=0.099 Sum_probs=144.8
Q ss_pred hcCceeEEcCCCCHHHHHHHHHHHhccCCCccCCcccccccceeeeEecCC-ccchhhhhc--CCCceeeeccCCccchh
Q 037230 588 KLACSISALEKDSDDYKMIVNYLEKTYEPVKLGDIEYGVSVDNIFVIESNA-QPSLDEIKK--LPNKVLLWCGTRSSNLL 664 (815)
Q Consensus 588 ~L~~~i~~L~~~s~ey~~I~~y~~~t~~~~h~~~~~~~~~I~~If~v~r~~-~~~f~~~~~--~~N~~lLwHGSr~~N~~ 664 (815)
.++|.|++|+++|+||++|+++|.+|++ +++|.+||||+|+. +++|..+++ ..|+++|||||+.+|+.
T Consensus 2 ~~~~~l~~L~~~s~ey~~v~~~f~~t~~---------~~~I~~I~rv~n~~~~~~f~~~k~~~~~n~~~l~HGt~~~~~~ 72 (173)
T 2x5y_A 2 SKKYKLSEIHHLHPEYVRVSEHFKASMK---------NFKIEKIKKIENSELLDKFTWKKSQMKEEGKLLFYATSRAYVE 72 (173)
T ss_dssp -CCCEEEECCTTSHHHHHHHHHHHTTCT---------TEEEEEEEEEECHHHHHHHHHHHHHHTCCCEEEEEEEEGGGHH
T ss_pred CCCeEEEECCCCCHHHHHHHHHHHhHCC---------CCEEeEEEEECCHHHHHHHHHHHHHHhhCcEEEEecCCcccHH
Confidence 4689999999999999999999999985 26799999999999 999998755 58999999999999999
Q ss_pred hhcccCCC--CCCCCCCCCCceeeeeeeechhhhhhhcccccCCCCCceEEEEEEEecCCcceeccCCCCcCccCCCCCc
Q 037230 665 RHLQKGFL--PASCSLPVPGYMFGRAIVCSDAAAEAARYGFTAADRPEGFLVLAVASLGDQVTELKKPPEDTKSLEDKKL 742 (815)
Q Consensus 665 gIL~~Gl~--iap~~a~~tG~mFGkGIYFAd~~skS~~Yc~~~~~~~~~~mlLceVaLG~~~~e~~~~~~~~~~~p~G~~ 742 (815)
+||++||+ ++++ +|+|||+|||||+++++|++||.++. +.++||||+|++|+ +.+ .+..+..||+|||
T Consensus 73 ~I~~~Gf~~~~~~~----~g~~~G~GiYfa~~~s~s~~Y~~~~~--~~~~m~lc~V~~G~-~~~---~~~~~~~pp~~yd 142 (173)
T 2x5y_A 73 SICSNNFDSFLHET----HENKYGKGIYFAKDAIYSHKNCPYDA--KNVVMFVAQVLVGK-FIE---GNITYTSPPPQFD 142 (173)
T ss_dssp HHHHHCCCHHHHCC----SCSSSCSSEEEESSHHHHHHHCCSCG--GGEEEEEEEECCCS-EEE---CCTTCSSCCTTCC
T ss_pred HHHHhCCCCcccCC----CcCCccCeEECCCChhhHhhcCCCCC--CCeEEEEEEEecCc-ccc---CCcccCCCCCCCC
Confidence 99999995 4443 89999999999999999999998754 46999999999999 553 2256889999999
Q ss_pred ceeeeccccCCCCCceeecCCeEecCCCcccCCCCCCCCCCceEEEecCCCcceeeEEEEEe
Q 037230 743 GVKGLGRKKTDESEHFFWNDDIKVPGGRLIPSEHKNSPLEYNEYAVYDPKQTSIRFLVGVKF 804 (815)
Q Consensus 743 Sv~g~G~~~Pdp~~~~~~~dgv~vP~G~~~~~~~~~~~l~ynEyIVYd~~Qv~~rYLv~~~~ 804 (815)
||.|.. ..++||||||.+||+|+|||.++-
T Consensus 143 Sv~~~~--------------------------------~~~~e~VV~~~~q~~P~YlI~y~~ 172 (173)
T 2x5y_A 143 SCVDTR--------------------------------SNPSVFVIFQKDQVYPQYVIEYTE 172 (173)
T ss_dssp EEESCS--------------------------------SSCCEEEECCGGGEEEEEEEEEEE
T ss_pred ceECCC--------------------------------CCCCEEEEEeCCeEeEEEEEEEeC
Confidence 998641 235799999999999999999873
No 7
>3u9h_A Tankyrase-2; protein-ligand complex, diphtheria toxin like fold, transfer ribosylation; HET: SO4; 1.75A {Homo sapiens} PDB: 3kr8_A* 3kr7_A* 3p0n_A* 3p0p_A* 3p0q_A* 3mhj_A* 3u9y_A* 3ua9_A* 4avu_A* 4avw_A* 3mhk_A* 2rf5_A 3udd_A* 3uh2_A* 3uh4_A* 4dvi_A* 4hlh_A* 4hki_A* 4hkn_A* 4hl5_A* ...
Probab=100.00 E-value=3.2e-37 Score=322.22 Aligned_cols=182 Identities=16% Similarity=0.214 Sum_probs=151.4
Q ss_pred cCceeEEcCCCCHHHHHHHHHHHhccCCCc----cCCcccccccceeeeEecCC-ccchhhhh--------cCCCceeee
Q 037230 589 LACSISALEKDSDDYKMIVNYLEKTYEPVK----LGDIEYGVSVDNIFVIESNA-QPSLDEIK--------KLPNKVLLW 655 (815)
Q Consensus 589 L~~~i~~L~~~s~ey~~I~~y~~~t~~~~h----~~~~~~~~~I~~If~v~r~~-~~~f~~~~--------~~~N~~lLw 655 (815)
.+|.|++|+++|+||++|++||.+|+.+.+ ++...+.++|++|+||+|+. +++|+.++ ..+|+++||
T Consensus 29 ~~~~l~~L~~~s~Ey~~V~~~f~~T~~~~~~~~~~~~~~~~~~I~~I~rIqn~~l~~~y~~~k~~m~~~~~~~~ne~~Lf 108 (240)
T 3u9h_A 29 SGTILIDLSPDDKEFQSVEEEMQSTVREHRDGGHAGGIFNRYNILKIQKVCNKKLWERYTHRRKEVSEENHNHANERMLF 108 (240)
T ss_dssp -CCEEEECCTTSHHHHHHHHHHHHTCCCCTTTTTTTCSCSCEEEEEEEEEECHHHHHHHHHHHHHHHHTTTTCCCEEEEE
T ss_pred CCeEEEECCCCCHHHHHHHHHHHhcccccccccccccccCCcEEEEEEEecCHhHHHHHHHHHHHHHHhcCCCCceEEEE
Confidence 468999999999999999999999997533 01112478999999999999 99998753 368999999
Q ss_pred ccCCccchhhhcccCCCCCCCCCCCCCceeeeeeeechhhhhhhcccccCCC-------------CCceEEEEEEEecCC
Q 037230 656 CGTRSSNLLRHLQKGFLPASCSLPVPGYMFGRAIVCSDAAAEAARYGFTAAD-------------RPEGFLVLAVASLGD 722 (815)
Q Consensus 656 HGSr~~N~~gIL~~Gl~iap~~a~~tG~mFGkGIYFAd~~skS~~Yc~~~~~-------------~~~~~mlLceVaLG~ 722 (815)
|||+. +.+||++||+++.+ .+|+|||+|||||++++||++||++..+ .+.++||||+|+||+
T Consensus 109 HGt~~--~~~I~~~Gf~~~~~---~~g~~~G~GiYfa~~~s~S~~y~~~~~~~~~~~~~~d~~~~~~~~~mlLc~V~lG~ 183 (240)
T 3u9h_A 109 HGSPF--VNAIIHKGFDERHA---YIGGMFGAGIYFAENSSKSNQYVYGIGGGTGCPVHKDRSCYICHRQLLFCRVTLGK 183 (240)
T ss_dssp ECCTT--HHHHHHHCCCGGGC---BTTSTTCSBEEEESSHHHHHTTTTSGGGTTCCTTTCCTTCSSSCEEEEEEEEECCS
T ss_pred echHh--HHHHHHcCCCcccc---cCCCcceeeEEecCChhhhhhhhhccccccccccccccccccCceEEEEEEEecCc
Confidence 99984 66999999998643 4799999999999999999999975311 257999999999999
Q ss_pred cceeccCCCCcCccCCCCCcceeeeccccCCCCCceeecCCeEecCCCcccCCCCCCCCCCceEEEecCCCcceeeEEEE
Q 037230 723 QVTELKKPPEDTKSLEDKKLGVKGLGRKKTDESEHFFWNDDIKVPGGRLIPSEHKNSPLEYNEYAVYDPKQTSIRFLVGV 802 (815)
Q Consensus 723 ~~~e~~~~~~~~~~~p~G~~Sv~g~G~~~Pdp~~~~~~~dgv~vP~G~~~~~~~~~~~l~ynEyIVYd~~Qv~~rYLv~~ 802 (815)
+.+...+ ..+..||+|||||.|.. . ..+|.||||||||.+||+|+|||.+
T Consensus 184 -~~~~~~~-~~~~~pP~gyDSvvg~~----~------------------------~~~l~~~E~VVy~~~qi~P~YlI~y 233 (240)
T 3u9h_A 184 -SFLQFSA-MKMAHSPPGHHSVTGRP----S------------------------VNGLALAEYVIYRGEQAYPEYLITY 233 (240)
T ss_dssp -EEEEEEC-C--CCCCTTCSEEEEEE----S------------------------SCTTCCCEEEESCGGGEEEEEEEEE
T ss_pred -eEeecCc-ccccCCCCCCCceecCC----C------------------------CCCCCCCEEEEEcccceeEEEEEEE
Confidence 8888877 67788999999999861 0 1358999999999999999999999
Q ss_pred Eec
Q 037230 803 KFE 805 (815)
Q Consensus 803 ~~~ 805 (815)
+.-
T Consensus 234 ~~~ 236 (240)
T 3u9h_A 234 QIM 236 (240)
T ss_dssp EEC
T ss_pred Ecc
Confidence 864
No 8
>2pqf_A Poly [ADP-ribose] polymerase 12; enzyme-inhibitor complex, catalytic fragment, structural GEN structural genomics consortium, SGC, transferase; HET: GAB CIT; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.5e-35 Score=302.13 Aligned_cols=170 Identities=15% Similarity=0.120 Sum_probs=141.3
Q ss_pred hcCceeEEcCCCCHHHHHHHHHHHhccCCCccCCcccccccceeeeEecCC-ccchhhhhc---------CCCceeeecc
Q 037230 588 KLACSISALEKDSDDYKMIVNYLEKTYEPVKLGDIEYGVSVDNIFVIESNA-QPSLDEIKK---------LPNKVLLWCG 657 (815)
Q Consensus 588 ~L~~~i~~L~~~s~ey~~I~~y~~~t~~~~h~~~~~~~~~I~~If~v~r~~-~~~f~~~~~---------~~N~~lLwHG 657 (815)
.++|.|++|+++|+||++|+++|.+|++. ++|.+|+||+++. +++|..+++ .+|+++||||
T Consensus 9 ~~~~~l~~L~~~s~Ey~~v~~~f~~t~~~---------~~I~~I~rv~n~~l~~~f~~~k~~~~~~~~~~~~ne~~LfHG 79 (198)
T 2pqf_A 9 DPGFQKITLSSSSEEYQKVWNLFNRTLPF---------YFVQKIERVQNLALWEVYQWQKGQMQKQNGGKAVDERQLFHG 79 (198)
T ss_dssp CCSCEEEECCTTSHHHHHHHHHHHTTCTT---------SEEEEEEEEECHHHHHHHHHHHHHHHHTTTTCCCCEEEEEEE
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCCC---------CEEEEEEEeCCHHHHHHHHHHHHHHHHhcCCCCcceEEEEec
Confidence 46899999999999999999999999863 5799999999999 999986532 3699999999
Q ss_pred CCccchhhhcccCCCCCCCCCCCCCceeeeeeeechhhhhhhcccccCCCCCceEEEEEEEecCCcceeccCCCCcCccC
Q 037230 658 TRSSNLLRHLQKGFLPASCSLPVPGYMFGRAIVCSDAAAEAARYGFTAADRPEGFLVLAVASLGDQVTELKKPPEDTKSL 737 (815)
Q Consensus 658 Sr~~N~~gIL~~Gl~iap~~a~~tG~mFGkGIYFAd~~skS~~Yc~~~~~~~~~~mlLceVaLG~~~~e~~~~~~~~~~~ 737 (815)
|+.+|+.+|+++||+++. ++.+|+|||+|||||+++|||++||.++. +.++||||+|+||+ +.. .. ..+..|
T Consensus 80 t~~~~~~~I~~~Gf~~~~--~~~~g~~~G~GiYfa~~~s~S~~Y~~~~~--~~~~m~lcrV~~G~-~~~--~~-~~~~~p 151 (198)
T 2pqf_A 80 TSAIFVDAICQQNFDWRV--CGVHGTSYGKGSYFARDAAYSHHYSKSDT--QTHTMFLARVLVGE-FVR--GN-ASFVRP 151 (198)
T ss_dssp CCGGGHHHHHHHCCCTTT--TCCCSSCSCSSEEEESSHHHHHTTCCCSS--SEEEEEEEEEECCS-EEE--CC-TTCSSC
T ss_pred CCHHHHHHHHHhCCCCcc--cCCCCCcccCeEECcCCcchhhhcccCCC--CceEEEEEEEecCC-ccc--CC-ccccCC
Confidence 999999999999998654 34589999999999999999999998754 78999999999999 653 22 334455
Q ss_pred CCC-------CcceeeeccccCCCCCceeecCCeEecCCCcccCCCCCCCCCCceEEEecCCCcceeeEEEEEecc
Q 037230 738 EDK-------KLGVKGLGRKKTDESEHFFWNDDIKVPGGRLIPSEHKNSPLEYNEYAVYDPKQTSIRFLVGVKFEE 806 (815)
Q Consensus 738 p~G-------~~Sv~g~G~~~Pdp~~~~~~~dgv~vP~G~~~~~~~~~~~l~ynEyIVYd~~Qv~~rYLv~~~~~~ 806 (815)
|.+ ||||.+- ...++||||||.+||+|+|||.++..-
T Consensus 152 p~~~~~~~~~yDSvv~~--------------------------------~~~~~e~VVy~~~qiyP~YlI~y~~~~ 195 (198)
T 2pqf_A 152 PAKEGWSNAFYDSCVNS--------------------------------VSDPSIFVIFEKHQVYPEYVIQYTTSS 195 (198)
T ss_dssp CBCSCC--CBCSEEESC--------------------------------SSSCCEEEESCGGGEEEEEEEEEESCC
T ss_pred CCCCCCCCCCcccCcCC--------------------------------CCCCCEEEEECCCcEeeEEEEEEEcCC
Confidence 554 5555431 124689999999999999999998653
No 9
>3blj_A Poly(ADP-ribose) polymerase 15; PARP, BAL-3, SGC, structural GE consortium, glycosyltransferase, NAD, nucleus; 2.20A {Homo sapiens} PDB: 3gey_A*
Probab=100.00 E-value=2.4e-34 Score=297.81 Aligned_cols=168 Identities=17% Similarity=0.170 Sum_probs=136.4
Q ss_pred hcCceeEEcCCCCHHHHHHHHHHHhccCCCccCCcccccccceeeeEecCC-ccchhhhhc--------CCCceeeeccC
Q 037230 588 KLACSISALEKDSDDYKMIVNYLEKTYEPVKLGDIEYGVSVDNIFVIESNA-QPSLDEIKK--------LPNKVLLWCGT 658 (815)
Q Consensus 588 ~L~~~i~~L~~~s~ey~~I~~y~~~t~~~~h~~~~~~~~~I~~If~v~r~~-~~~f~~~~~--------~~N~~lLwHGS 658 (815)
..+|.|++|+++++||+.|+++|.+|++. ++|.+|+||++.. +++|..+++ .+|+++|||||
T Consensus 34 ~~~~~l~~L~~~s~ey~~V~~~f~~t~~~---------~~I~~I~rV~n~~l~~~f~~~k~~~~~k~~~~~ne~lLfHGt 104 (221)
T 3blj_A 34 HQLFCMVQLEPGQSEYNTIKDKFTRTCSS---------YAIEKIERIQNAFLWQSYQVKKRQMDIKNDHKNNERLLFHGT 104 (221)
T ss_dssp TCSEEEEECCTTSHHHHHHHHHHHHHHTT---------SEEEEEEEEEEHHHHHHHHHHHHHHHHHSSSCCCEEEEEEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHhhCCC---------CEEEEEEEEcChhHHHHHHHHHHHHHHhcCCCCceEEEeccC
Confidence 45689999999999999999999999863 5699999999999 999987632 58999999999
Q ss_pred CccchhhhcccCCCCCCCCCCCCCceeeeeeeechhhhhhhc--ccccCCCCCceEEEEEEEecCCcceeccCCCCcCcc
Q 037230 659 RSSNLLRHLQKGFLPASCSLPVPGYMFGRAIVCSDAAAEAAR--YGFTAADRPEGFLVLAVASLGDQVTELKKPPEDTKS 736 (815)
Q Consensus 659 r~~N~~gIL~~Gl~iap~~a~~tG~mFGkGIYFAd~~skS~~--Yc~~~~~~~~~~mlLceVaLG~~~~e~~~~~~~~~~ 736 (815)
+.+|+++||++||+++ .++.+|+|||+|||||++++||++ ||.++ .++.++||||+|++|+ +..- . ..+..
T Consensus 105 ~~~~~~~I~~~Gf~~~--~a~~~g~~~G~GiYfa~~~s~S~~~~Y~~~~-~~g~~~mllcrV~~G~-~~~g--~-~~~~~ 177 (221)
T 3blj_A 105 DADSVPYVNQHGFNRS--CAGKNAVSYGKGTYFAVDASYSAKDTYSKPD-SNGRKHMYVVRVLTGV-FTKG--R-AGLVT 177 (221)
T ss_dssp CGGGHHHHHHHCCCTT--TC-----CCCSSEEEESSHHHHHSTTTSCCC-TTSCEEEEEEEEECCS-EEEC--C-TTCSS
T ss_pred ChHHHHHHHHhCCCCc--ccCCCCCccCCeEECCcchhhhcCcccccCC-CCCcEEEEEEEEEeCC-ccCC--C-hhccC
Confidence 9999999999999963 456689999999999999999999 77664 3578999999999999 5432 1 23334
Q ss_pred CC--------CCCcceeeeccccCCCCCceeecCCeEecCCCcccCCCCCCCCCCceEEEecCCCcceeeEEEEE
Q 037230 737 LE--------DKKLGVKGLGRKKTDESEHFFWNDDIKVPGGRLIPSEHKNSPLEYNEYAVYDPKQTSIRFLVGVK 803 (815)
Q Consensus 737 ~p--------~G~~Sv~g~G~~~Pdp~~~~~~~dgv~vP~G~~~~~~~~~~~l~ynEyIVYd~~Qv~~rYLv~~~ 803 (815)
|| .|||||.|. ...++||||||.+||+|+|||.++
T Consensus 178 pp~~~~~~~~~~yDSvv~~--------------------------------~~~~~e~VVy~~~qiyP~YlI~y~ 220 (221)
T 3blj_A 178 PPPKNPHNPTDLFDSVTNN--------------------------------TRSPKLFVVFFDNQAYPEYLITFT 220 (221)
T ss_dssp CCBSSTTSTTSBCSEEESC--------------------------------SSSCSEEEECSTTSEEEEEEEEEE
T ss_pred CCcccCCCCCCCCCccccC--------------------------------CCCCCEEEEEcCCeEeeeEEEEEE
Confidence 43 377887642 124689999999999999999986
No 10
>3hkv_A PARP-10, poly [ADP-ribose] polymerase 10; NAD, transferase, structural genomics, structural genomics consortium, SGC, cytoplasm, glycosyltransferase; HET: 3AB; 2.10A {Homo sapiens}
Probab=100.00 E-value=7.3e-34 Score=292.26 Aligned_cols=174 Identities=12% Similarity=0.176 Sum_probs=144.3
Q ss_pred CceeEEcCCCCHHHHHHHHHHHhccCCCccCCcccccccceeeeEecCC-ccchhhhh--------cCCCceeeeccCCc
Q 037230 590 ACSISALEKDSDDYKMIVNYLEKTYEPVKLGDIEYGVSVDNIFVIESNA-QPSLDEIK--------KLPNKVLLWCGTRS 660 (815)
Q Consensus 590 ~~~i~~L~~~s~ey~~I~~y~~~t~~~~h~~~~~~~~~I~~If~v~r~~-~~~f~~~~--------~~~N~~lLwHGSr~ 660 (815)
-|.|++|+++|+||++|+++|.+|++++| ..++|.+|+||+|+. +++|+.++ ...|+++|||||+.
T Consensus 10 ~~~L~~L~~~s~Ey~~V~~~F~~t~~~~~-----~~~~I~~I~RIqn~~l~~~f~~~k~~m~~k~~~~~ne~~LfHGt~~ 84 (217)
T 3hkv_A 10 WNNLERLAENTGEFQEVVRAFYDTLDAAR-----SSIRVVRVERVSHPLLQQQYELYRERLLQRCERRPVEQVLYHGTTA 84 (217)
T ss_dssp CCCEEECCSSSHHHHHHHHHHHHTTGGGG-----GTEEEEEEEEECCHHHHHHHHHHHHHHHHHCCSSCSEEEEEEEECG
T ss_pred cccceECCCCChHHHHHHHHHHhhcCCcC-----CCceEEEEEEECChhHHHHHHHHHHHHHHhcCCCCceEEEEeCCCH
Confidence 37999999999999999999999998654 357899999999999 99998753 24799999999999
Q ss_pred cchhhhcccCCCCCCCCCCCCCceeeeeeeechhhhhhh--cccccCCCCCceEEEEEEEecCCcceeccCCCCcCccCC
Q 037230 661 SNLLRHLQKGFLPASCSLPVPGYMFGRAIVCSDAAAEAA--RYGFTAADRPEGFLVLAVASLGDQVTELKKPPEDTKSLE 738 (815)
Q Consensus 661 ~N~~gIL~~Gl~iap~~a~~tG~mFGkGIYFAd~~skS~--~Yc~~~~~~~~~~mlLceVaLG~~~~e~~~~~~~~~~~p 738 (815)
+|+.+||++||+++. ++.+|+|||+|||||++++||+ .||.++ .++.++||||+|+||+ +.. .. ..+..||
T Consensus 85 ~~~~~I~~~GF~~~~--~g~~g~~~G~GiYFA~~~s~S~~~~Y~~~~-~~g~~~m~lcrVl~G~-~~~--g~-~~~~~PP 157 (217)
T 3hkv_A 85 PAVPDICAHGFNRSF--CGRNATVYGKGVYFAKRASLSVQDRYSPPN-ADGHKAVFVARVLTGD-YGQ--GR-RGLRAPP 157 (217)
T ss_dssp GGHHHHHHHCSCTTT--SCCCCCTTCSSEEEESSHHHHTSTTTSCCC-TTSEEEEEEEEEECCS-EEE--CC-TTCSSSC
T ss_pred HHHHHHHhcCCcccc--cCcchhccccceeccCCccccccccccccc-CCCceEEEEEEEEccc-ccc--CC-CccCCCC
Confidence 999999999997543 3347999999999999999997 698765 3678999999999999 543 22 3454555
Q ss_pred C--------CCcceeeeccccCCCCCceeecCCeEecCCCcccCCCCCCCCCCceEEEecCCCcceeeEEEEEeccc
Q 037230 739 D--------KKLGVKGLGRKKTDESEHFFWNDDIKVPGGRLIPSEHKNSPLEYNEYAVYDPKQTSIRFLVGVKFEER 807 (815)
Q Consensus 739 ~--------G~~Sv~g~G~~~Pdp~~~~~~~dgv~vP~G~~~~~~~~~~~l~ynEyIVYd~~Qv~~rYLv~~~~~~~ 807 (815)
. +||||.+- ...++||||||.+|+.+.|||.++-..+
T Consensus 158 ~~~~~~~~~~yDSvvd~--------------------------------~~np~~~VVf~~~qiyPeYLI~y~~~~~ 202 (217)
T 3hkv_A 158 LRGPGHVLLRYDSAMDC--------------------------------ICQPSIFVIFHDTQALPTHLITCEHVPR 202 (217)
T ss_dssp BCCTTCSSSBCSEEESC--------------------------------SSSCCEEEECCTTSEEEEEEEEEEECC-
T ss_pred CCccCCCCCceeEEECC--------------------------------CCCCCEEEEEcCCcCceeEEEEEecCCC
Confidence 3 58998752 1346899999999999999999998755
No 11
>3smj_A Poly [ADP-ribose] polymerase 14; diphtheria toxin like fold, transferase, NAD+, ADP-ribosylat transferase-transferase inhibitor complex; HET: FDR; 1.50A {Homo sapiens} PDB: 3goy_A* 3smi_A* 3se2_A* 4f1l_A* 4f1q_A*
Probab=100.00 E-value=2.1e-33 Score=284.96 Aligned_cols=167 Identities=13% Similarity=0.112 Sum_probs=137.6
Q ss_pred CceeEEcCCCCHHHHHHHHHHHhccCCCccCCcccccccceeeeEecCC-ccchhhhhc--------CCCceeeeccCCc
Q 037230 590 ACSISALEKDSDDYKMIVNYLEKTYEPVKLGDIEYGVSVDNIFVIESNA-QPSLDEIKK--------LPNKVLLWCGTRS 660 (815)
Q Consensus 590 ~~~i~~L~~~s~ey~~I~~y~~~t~~~~h~~~~~~~~~I~~If~v~r~~-~~~f~~~~~--------~~N~~lLwHGSr~ 660 (815)
+|.|++|+++|+||+.|+++|.+|+. +++|.+|+||+++. +++|+.+++ .+|+++|||||+.
T Consensus 8 ~~~l~~L~~~s~Ey~~V~~~f~~t~~---------~~~I~~I~rI~n~~l~~~f~~~k~~~~~k~~~~~ne~~L~HGt~~ 78 (193)
T 3smj_A 8 NFCVVELLPSDPEYNTVASKFNQTCS---------HFRIEKIERIQNPDLWNSYQAKKKTMDAKNGQTMNEKQLFHGTDA 78 (193)
T ss_dssp CEEEEECCTTSTTHHHHHHHHHHHHT---------TSEEEEEEEEECHHHHHHHHHHHHHHHHHSTTCCCEEEEEEEECG
T ss_pred CEEEEECCCCChHHHHHHHHHHhhCC---------CCeEEEEEEECCHHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCH
Confidence 58999999999999999999999985 25799999999999 999987532 4799999999999
Q ss_pred cchhhhcccCCCCCCCCCCCCCceeeeeeeechhhhhhhcccccC-CCCCceEEEEEEEecCCcceeccCCCCcCccCCC
Q 037230 661 SNLLRHLQKGFLPASCSLPVPGYMFGRAIVCSDAAAEAARYGFTA-ADRPEGFLVLAVASLGDQVTELKKPPEDTKSLED 739 (815)
Q Consensus 661 ~N~~gIL~~Gl~iap~~a~~tG~mFGkGIYFAd~~skS~~Yc~~~-~~~~~~~mlLceVaLG~~~~e~~~~~~~~~~~p~ 739 (815)
+|+.+||++||+++. ++.+|+|||+|||||++++||++||+.. ..++.++||||+|++|+ ... .. ..+..||.
T Consensus 79 ~~~~~I~~~Gf~~~~--~~~~~~~~G~GiYfa~~~s~S~~~~y~~~~~~g~~~mllcrV~~G~-~~~--g~-~~~~~pP~ 152 (193)
T 3smj_A 79 GSVPHVNRNGFNRSY--AGKNAVAYGKGTYFAVNANYSANDTYSRPDANGRKHVYYVRVLTGI-YTH--GN-HSLIVPPS 152 (193)
T ss_dssp GGHHHHHHHTTCCCC--TTGGGSSSCCCEEEESSHHHHTSTTTSCCCTTSCEEEEEEEEECCS-EEE--CC-SSCCSCCB
T ss_pred HHHHHHHHcCCCCcc--CCCCccccCCeEEecCCcchhcCccccCCCCCCcEEEEEEEEEecc-ccc--CC-CccCCCCC
Confidence 999999999998543 3347999999999999999999954432 24678999999999999 543 22 34555543
Q ss_pred --------CCcceeeeccccCCCCCceeecCCeEecCCCcccCCCCCCCCCCceEEEecCCCcceeeEEEEE
Q 037230 740 --------KKLGVKGLGRKKTDESEHFFWNDDIKVPGGRLIPSEHKNSPLEYNEYAVYDPKQTSIRFLVGVK 803 (815)
Q Consensus 740 --------G~~Sv~g~G~~~Pdp~~~~~~~dgv~vP~G~~~~~~~~~~~l~ynEyIVYd~~Qv~~rYLv~~~ 803 (815)
+||||.|- .-..+||||||.+||.|.|||.++
T Consensus 153 ~~~~~~~~~yDSvv~~--------------------------------~~~p~~~VVf~~~qiyP~YlI~y~ 192 (193)
T 3smj_A 153 KNPQNPTDLYDTVTDN--------------------------------VHHPSLFVAFYDYQAYPEYLITFR 192 (193)
T ss_dssp SCTTSTTCBCSEEESC--------------------------------SSSCSEEEECSTTCEEEEEEEEEE
T ss_pred ccCCCCCCCccceeCC--------------------------------CCCCCEEEEEeCCceeeEEEEEEe
Confidence 58998753 013479999999999999999986
No 12
>2eoc_A Poly [ADP-ribose] polymerase 3; anti-parallel beta-sheet, cell cycle control, DNA damage, transcription, NAD+, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.97 E-value=2e-31 Score=251.44 Aligned_cols=118 Identities=22% Similarity=0.398 Sum_probs=109.2
Q ss_pred HHHHhcCccCCCCCcccc-CCceEEEeCCeEEEEEEeeecCCCCcccEEEEEEEEcCCCCeEEEEEeeccCCCCcccccc
Q 037230 306 ELKLYGKRGVYKDTKLQE-QGGKILEKDGILYNCAFSLCDQGRGMNLYCIVQLITVPDSNLHLYYKKGKVGDDPNAEERL 384 (815)
Q Consensus 306 k~k~kg~~~Vd~~s~l~~-~~~hVy~d~~~~Y~~~L~~tDi~~~~NkfY~lQlle~~~~~y~vf~~wGRVG~~~~g~~k~ 384 (815)
+++++|+++|||+|++.+ ..+|||+| |+|+|+++|+++|+|+||+|||++++.+.|+||++|||||+. |++++
T Consensus 6 ~~~~k~~~~VD~~~~~~~~~~~~V~~d----y~~~L~~~d~~~n~nrfY~lQll~~~~g~~~v~~~WGRIG~~--Gq~~~ 79 (124)
T 2eoc_A 6 SGAEKRIIRVDPTCPLSSNPGTQVYED----YNCTLNQTNIENNNNKFYIIQLLQDSNRFFTCWNRWGRVGEV--GQSKI 79 (124)
T ss_dssp CCSCCCCCCCCSSSSTTTSTTCEEEEE----EEEEEEEEETTTTEEEEEEEEEEECTTSCEEEEEECSCTTSC--CCCEE
T ss_pred cceecCCcccCCCccccccCCcEEeEe----EEEEEEeecCCCCceeEEEEEEEecCCceEEEEEEECCCCCC--CceEe
Confidence 356789999999999874 38999997 999999999999999999999999988559999999999986 79999
Q ss_pred cCCCCHHHHHHHHHHHHHHHhcCCCccccccccCccCCCCccccccCC
Q 037230 385 EEWTGVDNAIKEFVRLFEEVTGNEFEPWEREKKFQKKPLKFYPIDMDD 432 (815)
Q Consensus 385 ~~~~s~e~Ai~~F~k~F~eKTgn~w~~w~~r~~f~k~pgKy~~v~~d~ 432 (815)
++|.++++|+.+|+++|++||||+| ++|.+|+++||||+||++|+
T Consensus 80 ~~~~s~~~A~~~F~k~f~~Ktgn~w---~~r~~f~~~pgky~~~e~d~ 124 (124)
T 2eoc_A 80 NHFTRLEDAKKDFEKKFREKTKNNW---AERDHFVSHPGKYTLIEVQA 124 (124)
T ss_dssp EEESSHHHHHHHHHHHHHHHHSSCS---TTGGGCCCCSSSCEEECCCC
T ss_pred ecCCCHHHHHHHHHHHHHHHHcCCc---ccccCcccCCCceeEEEecC
Confidence 9999999999999999999999965 78999999999999999986
No 13
>4f0d_A PARP-16, poly [ADP-ribose] polymerase 16; transferase, ARTD15, structural genomics structural genomics consortium, SGC; HET: 3AB; 2.70A {Homo sapiens}
Probab=99.83 E-value=1.4e-20 Score=198.39 Aligned_cols=117 Identities=16% Similarity=0.185 Sum_probs=96.4
Q ss_pred eeEEcCCCCHHHHHHHHHHHhccCCCccCCcccccccceeeeEe-cCC-ccchhhhhcCCCceeeeccCCccchhhhccc
Q 037230 592 SISALEKDSDDYKMIVNYLEKTYEPVKLGDIEYGVSVDNIFVIE-SNA-QPSLDEIKKLPNKVLLWCGTRSSNLLRHLQK 669 (815)
Q Consensus 592 ~i~~L~~~s~ey~~I~~y~~~t~~~~h~~~~~~~~~I~~If~v~-r~~-~~~f~~~~~~~N~~lLwHGSr~~N~~gIL~~ 669 (815)
.|..| .-.||..|.+++...+.+. .....||+|. +.+ .++|+++++.+|++++||||+.+||.+||++
T Consensus 94 ~l~~l--~k~ef~~l~~~~g~~~~p~--------~~P~~If~V~~~~~~~~~f~~~~~~~~~~~~~HGS~l~n~~sIL~~ 163 (277)
T 4f0d_A 94 TIHSA--GKAEFEKIQKLTGAPHTPV--------PAPDFLFEIEYFDPANAKFYETKGERDLIYAFHGSRLENFHSIIHN 163 (277)
T ss_dssp EEEEC--CSHHHHHHHHHTCSCSSCC--------CCCSEEEEEEECTTHHHHHHHHHTTSCEEEEEEECCGGGHHHHHHH
T ss_pred ceEec--CHHHHHHHHHHhCCCCCCC--------CCCceeEEEecCcchhhHHHHhhccCCcEEEEcCCcHHHHHHHHhc
Confidence 46666 4567989988776554433 3567999999 666 8999999889999999999999999999999
Q ss_pred CCCCCCCCCCCCCceeeeeeeechhhhhhhcccccCC------CCC-ceEEEEEEEecCC
Q 037230 670 GFLPASCSLPVPGYMFGRAIVCSDAAAEAARYGFTAA------DRP-EGFLVLAVASLGD 722 (815)
Q Consensus 670 Gl~iap~~a~~tG~mFGkGIYFAd~~skS~~Yc~~~~------~~~-~~~mlLceVaLG~ 722 (815)
||++++ .+|+|||+|||||+++++|++||.++. -++ .++|.||||+..-
T Consensus 164 GL~~~~----~~g~~fG~GiY~a~~~~~S~~ys~~~~~W~~S~~g~~~~~valcEvv~~p 219 (277)
T 4f0d_A 164 GLHCHL----NKTSLFGEGTYLTSDLSLALIYSPHGHGWQHSLLGPILSCVAVCEVIDHP 219 (277)
T ss_dssp CSCCC------CCCSSSCCEEEBSCHHHHHTTCCCEECCTTCTTCSEEEEEEEEEEECCC
T ss_pred ccccCc----ccccccCCceEeecchHHHhhhccCCCCcCcccccccceEEEEEEEecCC
Confidence 999976 489999999999999999999997632 122 6899999999954
No 14
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=99.64 E-value=2e-16 Score=146.26 Aligned_cols=84 Identities=32% Similarity=0.480 Sum_probs=75.5
Q ss_pred CCCCCCCCCcEEEEeeccccchHHHHHHHHHcCCEEEeecc-ceeEEEeChHHHhcCCchhHHHHHHcCCcEechhHHHH
Q 037230 184 GAAVKPFTGMTISLMGRLSRTHQYWRTTIEKHGGKVAASPI-GLTCLVASPAERERGGSSKLVEAMERGTRVVSEAWLID 262 (815)
Q Consensus 184 ~p~~~~L~g~~~~isG~l~~~r~elk~~Ie~~GG~v~~~vs-~~thlI~t~~e~~k~~s~K~~~A~~~gI~IVsed~L~d 262 (815)
.|..+||.|++|+|+|+|+.+|++++++|+.+||+|+++|+ +|||||++ ++++++ ++|+++|+++|||||+|+||.+
T Consensus 5 ~p~~~~l~G~~~ViTG~l~~~R~e~k~~ie~~Ggkv~~sVskkT~~lV~g-~~~e~~-gsKl~kA~~lgI~IvsE~~l~~ 82 (113)
T 2cok_A 5 SSGDKPLSNMKILTLGKLSRNKDEVKAMIEKLGGKLTGTANKASLCISTK-KEVEKM-NKKMEEVKEANIRVVSEDFLQD 82 (113)
T ss_dssp CCCCCSSSSCEEEECSCCSSCHHHHHHHHHHTTCEEESCSTTCSEEECCH-HHHHHC-CHHHHHHHHTTCCEECTHHHHH
T ss_pred CCCCCCcCCCEEEEEecCCCCHHHHHHHHHHCCCEEcCccccCccEEEEC-CCCCCC-ChHHHHHHHCCCcEEeHHHHHH
Confidence 35567899999999999988999999999999999999999 99999999 555667 5999999999999999999998
Q ss_pred HhhhcCC
Q 037230 263 SIEKQEA 269 (815)
Q Consensus 263 ~~~~~~~ 269 (815)
+...++.
T Consensus 83 ~~~~~~~ 89 (113)
T 2cok_A 83 VSASTKS 89 (113)
T ss_dssp HHSCCSC
T ss_pred HHhhchh
Confidence 8776654
No 15
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=99.63 E-value=4e-16 Score=143.17 Aligned_cols=92 Identities=21% Similarity=0.304 Sum_probs=81.9
Q ss_pred CCCCCCCCcEEEEeeccccchHHHHHHHHHcCCEEEeecc-ceeEEEeChHHHhcCCchhHHHHHHcCCcEechhHHHHH
Q 037230 185 AAVKPFTGMTISLMGRLSRTHQYWRTTIEKHGGKVAASPI-GLTCLVASPAERERGGSSKLVEAMERGTRVVSEAWLIDS 263 (815)
Q Consensus 185 p~~~~L~g~~~~isG~l~~~r~elk~~Ie~~GG~v~~~vs-~~thlI~t~~e~~k~~s~K~~~A~~~gI~IVsed~L~d~ 263 (815)
+.+.+|.|++|+++|.++..|.+|+++|+.+||+|+.+++ +|||||++. +.... ++|+++|+++||+||+++||.+|
T Consensus 11 ~~~~~l~g~~i~isg~~~~~r~~l~~li~~~Gg~v~~~~s~~~THlI~~~-~~~~~-~~K~~~A~~~gi~IV~~~Wl~~c 88 (107)
T 3l3e_A 11 EAPKPLHKVVVCVSKKLSKKQSELNGIAASLGADYRRSFDETVTHFIYQG-RPNDT-NREYKSVKERGVHIVSEHWLLDC 88 (107)
T ss_dssp ---CTTTTCEEEECGGGGGGHHHHHHHHHHTTCEEESSCCTTCCEEECCC-CTTCC-CHHHHHHHHTTCEEECHHHHHHH
T ss_pred cccCCCCCeEEEEeCCChHhHHHHHHHHHHcCCEEeccccCCceEEEecC-CCCCC-CHHHHHHHHCCCeEecHHHHHHH
Confidence 3467899999999999998899999999999999999999 999999965 22233 58999999999999999999999
Q ss_pred hhhcCCCCCcccccc
Q 037230 264 IEKQEAQPLEAYDLV 278 (815)
Q Consensus 264 ~~~~~~l~~~~Y~i~ 278 (815)
+..++++|+.+|.+.
T Consensus 89 ~~~~~~l~e~~Y~~~ 103 (107)
T 3l3e_A 89 AQECKHLPESLYPHT 103 (107)
T ss_dssp HHHTSCCCGGGCCTT
T ss_pred HHhCCCCchhhCCCC
Confidence 999999999999986
No 16
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.1e-15 Score=145.18 Aligned_cols=98 Identities=20% Similarity=0.291 Sum_probs=87.7
Q ss_pred CCccccCCCCCCCCCcEEEEeeccccchHHHHHHHHHcCCEEEeecc-ceeEEEeChHHHhcCCchhHHHHHHcCCcEec
Q 037230 178 RPRRDVGAAVKPFTGMTISLMGRLSRTHQYWRTTIEKHGGKVAASPI-GLTCLVASPAERERGGSSKLVEAMERGTRVVS 256 (815)
Q Consensus 178 ~p~r~~~p~~~~L~g~~~~isG~l~~~r~elk~~Ie~~GG~v~~~vs-~~thlI~t~~e~~k~~s~K~~~A~~~gI~IVs 256 (815)
.|.....|...+|.|++|+|+|.+...|.+|+++|+.+||+|+.+++ +|||||++. .. +.|+++|+++||+||+
T Consensus 11 ~~~~~~~~~~~~f~g~~i~itG~~~~~r~~l~~~i~~~Gg~v~~~~s~~~ThLI~~~----~~-~~K~~~A~~~gi~IV~ 85 (129)
T 2d8m_A 11 RPRAGPEELGKILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTRDSTHLICAF----AN-TPKYSQVLGLGGRIVR 85 (129)
T ss_dssp CSSCCHHHHTTTSTTEEEEEESCCTTHHHHHHHHHHHTTEEEESSCCTTCCEEEESS----SS-CHHHHHHHHHTCEEEE
T ss_pred CCcccCCCccccCCCeEEEEeCCCcHHHHHHHHHHHHcCCEEeCCcCCCCeEEEecC----CC-ChHHHHHHHCCCcEec
Confidence 33444455678899999999999987899999999999999999999 999999996 34 5999999999999999
Q ss_pred hhHHHHHhhhcCCCCCcccccccC
Q 037230 257 EAWLIDSIEKQEAQPLEAYDLVTD 280 (815)
Q Consensus 257 ed~L~d~~~~~~~l~~~~Y~i~s~ 280 (815)
++||.+|+..++++++.+|.+..+
T Consensus 86 ~~Wl~d~~~~~~~l~e~~Y~l~~~ 109 (129)
T 2d8m_A 86 KEWVLDCHRMRRRLPSQRYLMAGP 109 (129)
T ss_dssp THHHHHHHHTTSCCCGGGGBCSSS
T ss_pred HHHHHHHHHhCCcCChHhcccCCC
Confidence 999999999999999999999853
No 17
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens}
Probab=99.51 E-value=4.8e-15 Score=137.08 Aligned_cols=87 Identities=22% Similarity=0.228 Sum_probs=79.9
Q ss_pred CCCCCCcEEEEeeccccchHHHHHHHHHcCCEEEeecc-ceeEEEeChHHHhcCCchhHHHHHHcCCcEechhHHHHHhh
Q 037230 187 VKPFTGMTISLMGRLSRTHQYWRTTIEKHGGKVAASPI-GLTCLVASPAERERGGSSKLVEAMERGTRVVSEAWLIDSIE 265 (815)
Q Consensus 187 ~~~L~g~~~~isG~l~~~r~elk~~Ie~~GG~v~~~vs-~~thlI~t~~e~~k~~s~K~~~A~~~gI~IVsed~L~d~~~ 265 (815)
-+||.|++||++|.....|.+|+++|+.+||+|+..++ +|||||+++.. +.|++.|++++|+||+.+||++|++
T Consensus 19 ~p~F~g~~Ic~sGf~~~er~~l~~~i~~~GG~~~~~l~~~cTHLV~~~~~-----~~K~~~A~~~~i~IVs~eWl~dsi~ 93 (112)
T 3l46_A 19 VPPFQDCILSFLGFSDEEKTNMEEMTEMQGGKYLPLGDERCTHLVVEENI-----VKDLPFEPSKKLYVVKQEWFWGSIQ 93 (112)
T ss_dssp CCTTTTCEECEESCCHHHHHHHHHHHHHTTCEECCTTCTTCSEEEECTTT-----BSSCSSCCCSSCEEEEHHHHHHHHH
T ss_pred CCccCCeEEEEeCCCHHHHHHHHHHHHHcCCEECcccCCCceEEEecCCc-----hhhHHHHHHCCeeEecHHHHHHHHH
Confidence 36899999999996657799999999999999999999 99999999842 4688899999999999999999999
Q ss_pred hcCCCCCcccccc
Q 037230 266 KQEAQPLEAYDLV 278 (815)
Q Consensus 266 ~~~~l~~~~Y~i~ 278 (815)
.+.+++++.|.+.
T Consensus 94 ~g~~ldE~~Y~~~ 106 (112)
T 3l46_A 94 MDARAGETMYLYE 106 (112)
T ss_dssp HTSCCCGGGSBCC
T ss_pred cCCccChhhceec
Confidence 9999999999996
No 18
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=99.51 E-value=1.3e-14 Score=129.58 Aligned_cols=77 Identities=26% Similarity=0.329 Sum_probs=71.0
Q ss_pred CCCCCCCCcEEEEeeccccchHHHHHHHHHcCCEEEeecc-ceeEEEeChHHHhcCCchhHHHHHHcCCcEechhHHHHH
Q 037230 185 AAVKPFTGMTISLMGRLSRTHQYWRTTIEKHGGKVAASPI-GLTCLVASPAERERGGSSKLVEAMERGTRVVSEAWLIDS 263 (815)
Q Consensus 185 p~~~~L~g~~~~isG~l~~~r~elk~~Ie~~GG~v~~~vs-~~thlI~t~~e~~k~~s~K~~~A~~~gI~IVsed~L~d~ 263 (815)
|+.+||.|++|||+|.|+.+|++++++|+.+||+|+++|+ +|||||+++ ++ ++|+++|+++|||||+|+||.++
T Consensus 3 ~~~~~l~G~~~v~TG~l~~~R~e~~~~i~~~Gg~v~~sVskkt~~LV~g~----~~-gsK~~kA~~lgI~Ii~E~~f~~~ 77 (92)
T 1l7b_A 3 KGGEALKGLTFVITGELSRPREEVKALLRRLGAKVTDSVSRKTSYLVVGE----NP-GSKLEKARALGVPTLTEEELYRL 77 (92)
T ss_dssp CCCCSSTTCEEECSTTTTSCHHHHHHHHHHTTCEEESCCSSSCCCBEECS----SS-STTHHHHHCSSSCCEEHHHHHHH
T ss_pred CCCCCcCCcEEEEecCCCCCHHHHHHHHHHcCCEEeCcccCCeeEEEeCC----CC-ChHHHHHHHcCCcEEeHHHHHHH
Confidence 3467899999999999988999999999999999999999 999999997 45 49999999999999999999999
Q ss_pred hhh
Q 037230 264 IEK 266 (815)
Q Consensus 264 ~~~ 266 (815)
+..
T Consensus 78 l~~ 80 (92)
T 1l7b_A 78 LEA 80 (92)
T ss_dssp HHH
T ss_pred HHh
Confidence 864
No 19
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=99.47 E-value=8.4e-14 Score=128.12 Aligned_cols=77 Identities=26% Similarity=0.346 Sum_probs=70.2
Q ss_pred CCCCCCcEEEEeeccc-cchHHHHHHHHHcCCEEEeecc-ceeEEEeChHHHhcCCchhHHHHHHcCCcEechhHHHHHh
Q 037230 187 VKPFTGMTISLMGRLS-RTHQYWRTTIEKHGGKVAASPI-GLTCLVASPAERERGGSSKLVEAMERGTRVVSEAWLIDSI 264 (815)
Q Consensus 187 ~~~L~g~~~~isG~l~-~~r~elk~~Ie~~GG~v~~~vs-~~thlI~t~~e~~k~~s~K~~~A~~~gI~IVsed~L~d~~ 264 (815)
..+|.|++|||+|+|+ .+|++++++|+.+||+|+++|+ +|||||+++. .+++|+++|+++||+||+|+||.+++
T Consensus 30 ~~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Gg~v~~sVSkkTd~LV~G~~----~g~sK~~kA~~lgI~Ii~E~~f~~ll 105 (109)
T 2k6g_A 30 ENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRD----SGQSKSDKAAALGTKIIDEDGLLNLI 105 (109)
T ss_dssp TTTTTTCEEEEESBCSSCCHHHHHHHHHHTTCEEESSCCTTCCEEEECBC----CCHHHHHHHHHHTCEEECHHHHHHHH
T ss_pred CCCCCCCEEEEeeeCCCCCHHHHHHHHHHcCCEeeCcccCCceEEEECCC----CChHHHHHHHHcCCeEEeHHHHHHHH
Confidence 4679999999999996 6899999999999999999999 9999999973 43499999999999999999999998
Q ss_pred hhc
Q 037230 265 EKQ 267 (815)
Q Consensus 265 ~~~ 267 (815)
...
T Consensus 106 ~~~ 108 (109)
T 2k6g_A 106 RNL 108 (109)
T ss_dssp HHT
T ss_pred HhC
Confidence 653
No 20
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=1.5e-13 Score=126.82 Aligned_cols=76 Identities=26% Similarity=0.354 Sum_probs=70.0
Q ss_pred CCCCCCcEEEEeeccc-cchHHHHHHHHHcCCEEEeecc-ceeEEEeChHHHhcCCchhHHHHHHcCCcEechhHHHHHh
Q 037230 187 VKPFTGMTISLMGRLS-RTHQYWRTTIEKHGGKVAASPI-GLTCLVASPAERERGGSSKLVEAMERGTRVVSEAWLIDSI 264 (815)
Q Consensus 187 ~~~L~g~~~~isG~l~-~~r~elk~~Ie~~GG~v~~~vs-~~thlI~t~~e~~k~~s~K~~~A~~~gI~IVsed~L~d~~ 264 (815)
..+|.|++|||+|+|. .+|++++++|+.+||+|+++|+ +|||||++.. ++++|+++|+++||+||+|+||.+++
T Consensus 20 ~~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Ggkv~~sVSkkTd~LV~G~~----~g~sKl~KA~~lgI~IisE~~f~~ll 95 (112)
T 2ebu_A 20 ENCLEGLIFVITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRD----SGQSKSDKAAALGTKIIDEDGLLNLI 95 (112)
T ss_dssp SSSSTTCEEEECSCCSSSCHHHHHHHHHHTTCEECSSCCSSCCEEEECSS----CCSHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred CCCcCCCEEEEeeeCCCCCHHHHHHHHHHcCCEEeccccCCeeEEEecCC----CChHHHHHHHHcCCeEEeHHHHHHHH
Confidence 3679999999999996 6899999999999999999999 9999999973 43599999999999999999999998
Q ss_pred hh
Q 037230 265 EK 266 (815)
Q Consensus 265 ~~ 266 (815)
..
T Consensus 96 ~~ 97 (112)
T 2ebu_A 96 RT 97 (112)
T ss_dssp HH
T ss_pred hh
Confidence 75
No 21
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.41 E-value=5.2e-14 Score=129.72 Aligned_cols=88 Identities=19% Similarity=0.220 Sum_probs=79.9
Q ss_pred CCCCCCcEEEEeeccccchHHHHHHHHHcCCEEEeecc-ceeEEEeChHHHhcCCchhHHHHHHcCCcEechhHHHHHhh
Q 037230 187 VKPFTGMTISLMGRLSRTHQYWRTTIEKHGGKVAASPI-GLTCLVASPAERERGGSSKLVEAMERGTRVVSEAWLIDSIE 265 (815)
Q Consensus 187 ~~~L~g~~~~isG~l~~~r~elk~~Ie~~GG~v~~~vs-~~thlI~t~~e~~k~~s~K~~~A~~~gI~IVsed~L~d~~~ 265 (815)
-++|.|++|+++|.....|.+|+++|+.+||+|+..++ +|||||+... . +.|++.|++++|+||+.+||+||++
T Consensus 10 ~~~F~g~~i~~sg~~~~~r~~l~~~i~~~GG~~~~~~~~~~THLV~~~~----~-~~K~~~a~~~~i~IV~~~Wl~dsi~ 84 (109)
T 2cou_A 10 VPPFQDCILSFLGFSDEEKHSMEEMTEMQGGSYLPVGDERCTHLIVEEN----T-VKDLPFEPSKKLFVVKQEWFWGSIQ 84 (109)
T ss_dssp CCTTTTCBEEEESSCHHHHHHHHHHHHHHTCBCCCTTCTTCSEEEECTT----T-CSSCSSCCCTTSEEECHHHHHHHHH
T ss_pred CCcCCCeEEEecCCCHHHHHHHHHHHHHcCCEEecccCCCccEEEEeCC----c-cHHHHHHHHCCCeEecHHHHHHHHH
Confidence 35799999999996667899999999999999999899 9999999874 2 4788999999999999999999999
Q ss_pred hcCCCCCccccccc
Q 037230 266 KQEAQPLEAYDLVT 279 (815)
Q Consensus 266 ~~~~l~~~~Y~i~s 279 (815)
.+.++++..|.+..
T Consensus 85 ~g~~ldE~~Y~~~~ 98 (109)
T 2cou_A 85 MDARAGETMYLYEK 98 (109)
T ss_dssp TTSCCCGGGTBCCC
T ss_pred cCCcCChhccCCCC
Confidence 99999999999874
No 22
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=99.36 E-value=1.1e-12 Score=116.28 Aligned_cols=84 Identities=29% Similarity=0.375 Sum_probs=72.0
Q ss_pred CCCCCCcEEEEeeccccchHHHHHHHHHcCCEEEeecc---ceeEEEeChHHHhcCCchhHHHHHHcCCcEechhHHHHH
Q 037230 187 VKPFTGMTISLMGRLSRTHQYWRTTIEKHGGKVAASPI---GLTCLVASPAERERGGSSKLVEAMERGTRVVSEAWLIDS 263 (815)
Q Consensus 187 ~~~L~g~~~~isG~l~~~r~elk~~Ie~~GG~v~~~vs---~~thlI~t~~e~~k~~s~K~~~A~~~gI~IVsed~L~d~ 263 (815)
+.+|+|++|+++|....++.+|+++|+.+||+++..++ +|||||++... +.|..++ .+|+||+++||.||
T Consensus 5 ~~~f~g~~~~i~g~~~~~~~~l~~~i~~~GG~~~~~~~~~~~~THlI~~~~~-----~~K~~~~--~~~~iV~~~Wi~dc 77 (92)
T 4id3_A 5 SKIFKNCVIYINGYTKPGRLQLHEMIVLHGGKFLHYLSSKKTVTHIVASNLP-----LKKRIEF--ANYKVVSPDWIVDS 77 (92)
T ss_dssp -CTTTTCEEEECSCCSSCHHHHHHHHHHTTCEEESSCCCTTTCCEEECSCCC-----HHHHHHT--TTSCEECTHHHHHH
T ss_pred ccccCCEEEEEeCCCCcCHHHHHHHHHHCCCEEEEEecCCCceEEEEecCCC-----HHHHHHc--CCCCEEcccHHHHH
Confidence 56899999999996555799999999999999999986 69999999742 2443332 79999999999999
Q ss_pred hhhcCCCCCccccc
Q 037230 264 IEKQEAQPLEAYDL 277 (815)
Q Consensus 264 ~~~~~~l~~~~Y~i 277 (815)
+..++.+|+.+|.+
T Consensus 78 i~~~~~l~e~~Y~l 91 (92)
T 4id3_A 78 VKEARLLPWQNYSL 91 (92)
T ss_dssp HHHTSCCCGGGGBC
T ss_pred HHcCCcCChhhccc
Confidence 99999999999986
No 23
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens}
Probab=99.33 E-value=1.9e-12 Score=116.21 Aligned_cols=88 Identities=23% Similarity=0.392 Sum_probs=76.8
Q ss_pred CCCCCCCCCcEEEEeeccccchHHHHHHHHHcCCEEEeecc--ceeEEEeChHHHhcCCchhHHHHHHcCCcEechhHHH
Q 037230 184 GAAVKPFTGMTISLMGRLSRTHQYWRTTIEKHGGKVAASPI--GLTCLVASPAERERGGSSKLVEAMERGTRVVSEAWLI 261 (815)
Q Consensus 184 ~p~~~~L~g~~~~isG~l~~~r~elk~~Ie~~GG~v~~~vs--~~thlI~t~~e~~k~~s~K~~~A~~~gI~IVsed~L~ 261 (815)
++.+.+|.|++|+++|....++++|+++|+.+||+++..++ .+||||++.. . +.|++.|+ +++||+++||.
T Consensus 7 ~~~~~lF~g~~~~isg~~~~~~~~L~~~i~~~GG~~~~~~~~~~~THlI~~~~----~-~~k~~~~~--~~~iV~p~Wl~ 79 (97)
T 2ebw_A 7 GTSSTIFSGVAIYVNGYTDPSAEELRKLMMLHGGQYHVYYSRSKTTHIIATNL----P-NAKIKELK--GEKVIRPEWIV 79 (97)
T ss_dssp SCCCCTTTTCEEEECSSCSSCHHHHHHHHHHTTCEECSSCCSSSCCEEECSCC----C-TTHHHHTS--SSCCBCTHHHH
T ss_pred CCCCCCCCCeEEEEeCCCcccHHHHHHHHHHcCCEEeeecCCCCCEEEEecCC----C-hHHHHHhc--CCCEeChHHHH
Confidence 34567899999999998777899999999999999988765 7999999973 2 36777775 99999999999
Q ss_pred HHhhhcCCCCCcccccc
Q 037230 262 DSIEKQEAQPLEAYDLV 278 (815)
Q Consensus 262 d~~~~~~~l~~~~Y~i~ 278 (815)
||+..++.+|+.+|.+.
T Consensus 80 dci~~~~~l~~~~Y~l~ 96 (97)
T 2ebw_A 80 ESIKAGRLLSYIPYQLY 96 (97)
T ss_dssp HHHHHTSCCCSGGGBSC
T ss_pred HHHHcCCccCchHcEec
Confidence 99999999999999874
No 24
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*
Probab=99.26 E-value=5.4e-12 Score=136.04 Aligned_cols=88 Identities=24% Similarity=0.269 Sum_probs=82.1
Q ss_pred CCCCCCcEEEEeeccccchHHHHHHHHHcCCEEEeecc--ceeEEEeChHHHhcCCchhHHHHHHcCCcEechhHHHHHh
Q 037230 187 VKPFTGMTISLMGRLSRTHQYWRTTIEKHGGKVAASPI--GLTCLVASPAERERGGSSKLVEAMERGTRVVSEAWLIDSI 264 (815)
Q Consensus 187 ~~~L~g~~~~isG~l~~~r~elk~~Ie~~GG~v~~~vs--~~thlI~t~~e~~k~~s~K~~~A~~~gI~IVsed~L~d~~ 264 (815)
.++|.|++|+++|.+..+|++|+.+|+.+||+++.+++ +|||||++.. . ++|+++|+++||+||+++||.+|+
T Consensus 197 ~~~f~g~~i~~tG~~~~~r~~l~~li~~~GG~~~~~ls~~~~THLI~~~~----~-g~K~~~A~~~gi~IV~~~Wl~dsi 271 (298)
T 3olc_X 197 CPIFLGCIICVTGLCGLDRKEVQQLTVKHGGQYMGQLKMNECTHLIVQEP----K-GQKYECAKRWNVHCVTTQWFFDSI 271 (298)
T ss_dssp CCTTTTCEEEECSCCHHHHHHHHHHHHHTTCEECSSCCTTTCCEEECSSS----C-SHHHHHHHHTTCEEECHHHHHHHH
T ss_pred ccccCCeEEEEeCCCCccHHHHHHHHHHcCCEEeceecCCCceEEEEeCC----C-chHHHHHHHCCCeEEeHHHHHHHH
Confidence 56899999999998888899999999999999999998 7999999974 3 589999999999999999999999
Q ss_pred hhcCCCCCccccccc
Q 037230 265 EKQEAQPLEAYDLVT 279 (815)
Q Consensus 265 ~~~~~l~~~~Y~i~s 279 (815)
..+.++|+.+|.+..
T Consensus 272 ~~g~~lde~~Y~l~~ 286 (298)
T 3olc_X 272 EKGFCQDESIYKTEP 286 (298)
T ss_dssp HHTSCCCGGGSBSCC
T ss_pred HCCCCCCchhcCCCC
Confidence 999999999999973
No 25
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe}
Probab=99.22 E-value=1.1e-11 Score=139.14 Aligned_cols=86 Identities=21% Similarity=0.242 Sum_probs=79.0
Q ss_pred CCCCCCcEEEEeecccc----chHHHHHHHHHcCCEEEeecc-ceeEEEeChHHHhcCCchhHHHHHHc-CCcEechhHH
Q 037230 187 VKPFTGMTISLMGRLSR----THQYWRTTIEKHGGKVAASPI-GLTCLVASPAERERGGSSKLVEAMER-GTRVVSEAWL 260 (815)
Q Consensus 187 ~~~L~g~~~~isG~l~~----~r~elk~~Ie~~GG~v~~~vs-~~thlI~t~~e~~k~~s~K~~~A~~~-gI~IVsed~L 260 (815)
.++|.|++||++|.++. .|.+|..+|+.+||+++.+|+ +||||||+. .. +.|+++|+++ ||+||+++||
T Consensus 350 ~~~L~G~~IvfSG~~p~~~~~~r~~l~~~~~~lGa~~~~~vs~~vTHLVa~~----~~-t~K~~~A~~~g~IkIVs~~WL 424 (442)
T 3ef1_A 350 QKVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDFSVPPTHLIAAK----IR-TEKVKKAVSMGNIKVVKLNWL 424 (442)
T ss_dssp HTTSTTCEEEEESSSCTTSCSTTSHHHHHHHTTTCEECSSSSSCCSEEEECS----CC-CHHHHHHHHHSSSEEEEHHHH
T ss_pred hcccCCcEEEEecccCCCCCccHHHHHHHHHHcCCEEeCCCCCCceEEEeCC----CC-CHHHHHHHhcCCCEEEeHHHH
Confidence 46899999999999863 578999999999999999999 999999996 23 6999999998 5999999999
Q ss_pred HHHhhhcCCCCCccccc
Q 037230 261 IDSIEKQEAQPLEAYDL 277 (815)
Q Consensus 261 ~d~~~~~~~l~~~~Y~i 277 (815)
.+|+..++++++.+|.+
T Consensus 425 ~dcl~~~krldE~~YlL 441 (442)
T 3ef1_A 425 TESLSQWKRLPESDYLL 441 (442)
T ss_dssp HHHHHHTSCCCGGGTBC
T ss_pred HHHHHcCCcCChhcccc
Confidence 99999999999999986
No 26
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}
Probab=99.21 E-value=1.7e-11 Score=135.79 Aligned_cols=86 Identities=21% Similarity=0.242 Sum_probs=79.1
Q ss_pred CCCCCCcEEEEeecccc----chHHHHHHHHHcCCEEEeecc-ceeEEEeChHHHhcCCchhHHHHHHc-CCcEechhHH
Q 037230 187 VKPFTGMTISLMGRLSR----THQYWRTTIEKHGGKVAASPI-GLTCLVASPAERERGGSSKLVEAMER-GTRVVSEAWL 260 (815)
Q Consensus 187 ~~~L~g~~~~isG~l~~----~r~elk~~Ie~~GG~v~~~vs-~~thlI~t~~e~~k~~s~K~~~A~~~-gI~IVsed~L 260 (815)
+.+|.|++|+++|.++. .+.+++++|+.+||+++.+++ +|||||++. .. +.|+++|+++ ||+||+++||
T Consensus 280 ~~~L~G~~ivfSG~~~~~~~~~~~~l~~l~~~lGa~v~~~vs~~vTHLVa~~----~~-t~K~~~A~~~~~I~IV~~~Wl 354 (372)
T 3ef0_A 280 QKVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDFSVPPTHLIAAK----IR-TEKVKKAVSMGNIKVVKLNWL 354 (372)
T ss_dssp TTTSTTCEEEEESSSCTTSCTTTSHHHHHHHHTTCEEESSSSSCCSEEEECS----CC-CHHHHHHHHSSSCCEEEHHHH
T ss_pred hhhcCCcEEEEecccCCCcchhHHHHHHHHHHcCCEEeCcCCCCceEEEEcC----CC-chHHHHHHhcCCCEEEcHHHH
Confidence 67999999999999862 368999999999999999999 999999996 23 6999999998 8999999999
Q ss_pred HHHhhhcCCCCCccccc
Q 037230 261 IDSIEKQEAQPLEAYDL 277 (815)
Q Consensus 261 ~d~~~~~~~l~~~~Y~i 277 (815)
.+|+..++++++.+|.+
T Consensus 355 ~~c~~~~~~vdE~~Y~l 371 (372)
T 3ef0_A 355 TESLSQWKRLPESDYLL 371 (372)
T ss_dssp HHHHHTTSCCCGGGGBC
T ss_pred HHHHHhCCcCChhhcee
Confidence 99999999999999986
No 27
>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A*
Probab=99.20 E-value=3.5e-11 Score=110.37 Aligned_cols=88 Identities=15% Similarity=0.132 Sum_probs=78.2
Q ss_pred CCCCCCcEEEEeeccc----cchHHHHHHHHHcCCEEEeecc-ceeEEEeChHHHhcCCchhHHHHHHcCCcEechhHHH
Q 037230 187 VKPFTGMTISLMGRLS----RTHQYWRTTIEKHGGKVAASPI-GLTCLVASPAERERGGSSKLVEAMERGTRVVSEAWLI 261 (815)
Q Consensus 187 ~~~L~g~~~~isG~l~----~~r~elk~~Ie~~GG~v~~~vs-~~thlI~t~~e~~k~~s~K~~~A~~~gI~IVsed~L~ 261 (815)
.++|+|+++++.+... ...+.+..++..+||+++..++ .|||||+.+. .++++++|++++|+||+.+||.
T Consensus 5 ~p~f~g~vvyvd~~~~~g~~~~s~~l~~~l~~~GA~v~~~l~~~vTHvV~~~~-----~~~~~~~A~~~~i~iV~~~Wv~ 79 (107)
T 3pa6_A 5 APILKDVVAYVEVWSSNGTENYSKTFTTQLVDMGAKVSKTFNKQVTHVIFKDG-----YQSTWDKAQKRGVKLVSVLWVE 79 (107)
T ss_dssp CCTTTTCEEEEEEBCTTSCCBCHHHHHHHHHHTTCEECSSCCTTCCEEEEESC-----CHHHHHHHHHHTCEEECHHHHH
T ss_pred ccccCCEEEEEeccCCCChhhHHHHHHHHHHHcCCEEecccCCCccEEEEeCC-----CChHHHHHhcCCCEEECHHHHH
Confidence 4689999999988863 1247899999999999999999 9999999863 2478999999999999999999
Q ss_pred HHhhhcCCCCCccccccc
Q 037230 262 DSIEKQEAQPLEAYDLVT 279 (815)
Q Consensus 262 d~~~~~~~l~~~~Y~i~s 279 (815)
+|+..++++++.+|.+..
T Consensus 80 ~C~~~~~~vdE~~Y~i~~ 97 (107)
T 3pa6_A 80 KCRTAGAHIDESLFPAAN 97 (107)
T ss_dssp HHHHHTSCCCGGGSBCCC
T ss_pred HHHHhCccCChhcccCCC
Confidence 999999999999999874
No 28
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5
Probab=99.06 E-value=3.6e-10 Score=107.43 Aligned_cols=87 Identities=21% Similarity=0.240 Sum_probs=75.9
Q ss_pred CCCCCCCcEEEEeeccccchHHHHHHHHHcCCEEEeecc-ceeEEEeChHHHhcCCchhHHHHHH---cCCcEechhHHH
Q 037230 186 AVKPFTGMTISLMGRLSRTHQYWRTTIEKHGGKVAASPI-GLTCLVASPAERERGGSSKLVEAME---RGTRVVSEAWLI 261 (815)
Q Consensus 186 ~~~~L~g~~~~isG~l~~~r~elk~~Ie~~GG~v~~~vs-~~thlI~t~~e~~k~~s~K~~~A~~---~gI~IVsed~L~ 261 (815)
+...|.|++|++.|.....+..|+.+|..+||+++..++ .|||||+... ..+++++.. .+++||+.+||.
T Consensus 37 ~~~lF~g~~i~i~G~~~~~~~~L~~~i~~~Gg~v~~~l~~~vTHvI~~~~------~~~~~~~~~~~~~~~~iV~~~Wv~ 110 (132)
T 1wf6_A 37 PEDLLDGCRIYLCGFSGRKLDKLRRLINSGGGVRFNQLNEDVTHVIVGDY------DDELKQFWNKSAHRPHVVGAKWLL 110 (132)
T ss_dssp CTTTTTTCEEEEESCCSHHHHHHHHHHHHTTCEEESSCCSSCCEEEESSC------CSHHHHHHHHSCCCCCEEEHHHHH
T ss_pred cccccCCEEEEEECCChHHHHHHHHHHHHCCCEEeCcCCCCCeEEEECCc------hHHHHHHHHhhCCCCeEechHHHH
Confidence 367899999999998777789999999999999999999 9999999852 245665543 579999999999
Q ss_pred HHhhhcCCCCCcccccc
Q 037230 262 DSIEKQEAQPLEAYDLV 278 (815)
Q Consensus 262 d~~~~~~~l~~~~Y~i~ 278 (815)
+|+..++.+|+..|.+.
T Consensus 111 dsi~~~~ll~e~~Y~~~ 127 (132)
T 1wf6_A 111 ECFSKGYMLSEEPYIHS 127 (132)
T ss_dssp HHHHHSSCCCSGGGBCC
T ss_pred HHHHcCCcCCHhhccCC
Confidence 99999999999999875
No 29
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A
Probab=98.99 E-value=1.2e-09 Score=99.58 Aligned_cols=88 Identities=17% Similarity=0.267 Sum_probs=78.5
Q ss_pred CCCCCCcEEEEeeccc-cchHHHHHHHHHcCCEEEeecc-ceeEEEeChHHHhcCCchhHHHHHH--cCCcEechhHHHH
Q 037230 187 VKPFTGMTISLMGRLS-RTHQYWRTTIEKHGGKVAASPI-GLTCLVASPAERERGGSSKLVEAME--RGTRVVSEAWLID 262 (815)
Q Consensus 187 ~~~L~g~~~~isG~l~-~~r~elk~~Ie~~GG~v~~~vs-~~thlI~t~~e~~k~~s~K~~~A~~--~gI~IVsed~L~d 262 (815)
...|.|++|++.|.++ ..+..+..+|..+||.+....+ +|||+|+... .+.+++.|++ .++.+|+++||.+
T Consensus 5 pd~F~g~~f~l~~~~p~~~r~~l~ryiia~GG~v~~~~~~~vTHvIt~~~-----~d~~~~~a~~~~p~~~~V~P~WI~~ 79 (104)
T 3pc6_A 5 PDFFEGKHFFLYGEFPGDERRRLIRYVTAFNGELEDYMNERVQFVITAQE-----WDPNFEEALMENPSLAFVRPRWIYS 79 (104)
T ss_dssp CCTTTTCEEEEESCCSTTHHHHHHHHHHHTTCEECSSCCTTCCEEEESSC-----CCHHHHHHHTTCTTCEEECHHHHHH
T ss_pred chhhCCeEEEEcCCCcHHHHHHHHHHHHHcCCEEEcccCCCceEEEeCCC-----CChhHHHHhhhCCCCeEEccHHHHH
Confidence 4579999999999995 6689999999999999999888 9999999973 2578888886 5799999999999
Q ss_pred HhhhcCCCCCccccccc
Q 037230 263 SIEKQEAQPLEAYDLVT 279 (815)
Q Consensus 263 ~~~~~~~l~~~~Y~i~s 279 (815)
|+.+++.+|+++|.+..
T Consensus 80 Ci~~~klvp~~~y~~~~ 96 (104)
T 3pc6_A 80 CNEKQKLLPHQLYGVVP 96 (104)
T ss_dssp HHHHTSCCCGGGGBCCC
T ss_pred HHhcCccCCcccceecc
Confidence 99999999999999873
No 30
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*
Probab=98.93 E-value=1.5e-09 Score=116.97 Aligned_cols=81 Identities=20% Similarity=0.257 Sum_probs=74.0
Q ss_pred CCCCCCcEEEEeeccccchHHHHHHHHHcCCEEEeecc-ceeEEEeChHHHhcCCchhHHHHHHcCCcEechhHHHHHhh
Q 037230 187 VKPFTGMTISLMGRLSRTHQYWRTTIEKHGGKVAASPI-GLTCLVASPAERERGGSSKLVEAMERGTRVVSEAWLIDSIE 265 (815)
Q Consensus 187 ~~~L~g~~~~isG~l~~~r~elk~~Ie~~GG~v~~~vs-~~thlI~t~~e~~k~~s~K~~~A~~~gI~IVsed~L~d~~~ 265 (815)
+.+|.|++||++|..+..+.+|.++|+.+||+++..++ +|||||++.. . +.|++.|.++|||||+++||.+|..
T Consensus 103 ~~~l~g~~~~~tG~~~~~r~~l~~~i~~~GG~v~~~~t~~tTHLI~~~~----~-t~Ky~~A~~~gi~IV~~~Wl~~c~~ 177 (298)
T 3olc_X 103 NMVMSDVTISCTSLEKEKREEVHKYVQMMGGRVYRDLNVSVTHLIAGEV----G-SKKYLVAANLKKPILLPSWIKTLWE 177 (298)
T ss_dssp CCTTTTCEEEEESCCHHHHHHHHHHHHHTTCEECSSCCTTCCEEEESSS----C-SHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred ccccCCeEEEeCCCcHHhHHHHHHHHHHCCCEEecCcCCCeeEEEEeCC----C-ChHHHHHHHCCCeEeeHHHHHHHHH
Confidence 66899999999999888899999999999999999999 9999999973 3 6899999999999999999999998
Q ss_pred hcCCCCC
Q 037230 266 KQEAQPL 272 (815)
Q Consensus 266 ~~~~l~~ 272 (815)
.+..+++
T Consensus 178 ~~~~~~~ 184 (298)
T 3olc_X 178 KSQEKKI 184 (298)
T ss_dssp HHHTTCC
T ss_pred cCCcCCc
Confidence 8776544
No 31
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B
Probab=98.90 E-value=2.2e-09 Score=113.43 Aligned_cols=89 Identities=20% Similarity=0.250 Sum_probs=77.3
Q ss_pred CCCCCCCcEEEEeecccc-----------------------------chHHHHHHHHHcCCEEEeecc-c------eeEE
Q 037230 186 AVKPFTGMTISLMGRLSR-----------------------------THQYWRTTIEKHGGKVAASPI-G------LTCL 229 (815)
Q Consensus 186 ~~~~L~g~~~~isG~l~~-----------------------------~r~elk~~Ie~~GG~v~~~vs-~------~thl 229 (815)
.+++|.||.|++|+.... ++.+|+++|+++||+|+.+++ . +|||
T Consensus 12 ~~~iF~g~~F~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~I~~~GG~v~~~~~~~~~~~~~~t~L 91 (259)
T 1kzy_C 12 NKTLFLGYAFLLTMATTSDKLASRSKLPDGPTGSSEEEEEFLEIPPFNKQYTESQLRAGAGYILEDFNEAQCNTAYQCLL 91 (259)
T ss_dssp STTTTTTEEEEECCCC---------------------------CCCCCHHHHHHHHHTTTCEECSSCCTTTTTTTCEEEE
T ss_pred CCcCcCCcEEEEEcccccccccccccccccccccccccccccccCcccHHHHHHHHHHCCCEEecCccccccccCCCeEE
Confidence 478899999999998652 578999999999999998887 3 6899
Q ss_pred EeChHHHhcCCchhHHHHHHcCCcEechhHHHHHhhhcCCCCCcccccc
Q 037230 230 VASPAERERGGSSKLVEAMERGTRVVSEAWLIDSIEKQEAQPLEAYDLV 278 (815)
Q Consensus 230 I~t~~e~~k~~s~K~~~A~~~gI~IVsed~L~d~~~~~~~l~~~~Y~i~ 278 (815)
|+... .. +.|+..|...|||||+.+||.+|+..++.+++.+|.+.
T Consensus 92 Ia~~~---~r-t~K~l~ala~g~~iVs~~Wl~dc~~~~~~l~~~~Y~l~ 136 (259)
T 1kzy_C 92 IADQH---CR-TRKYFLCLASGIPCVSHVWVHDSCHANQLQNYRNYLLP 136 (259)
T ss_dssp EESSC---CC-SHHHHHHHHHTCCEEETHHHHHHHHHTSCCCGGGSBCC
T ss_pred EcCCC---CC-cHHHHHHHhcCCCCccHHHHHHHHHcCCcCCHHHccCC
Confidence 99873 22 67999999999999999999999999999999999986
No 32
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=98.87 E-value=2.1e-09 Score=110.88 Aligned_cols=87 Identities=23% Similarity=0.230 Sum_probs=77.9
Q ss_pred CCCCCcEEEEeeccccchHHHHHHHHHcCCEEEeeccceeEEEeChHHHhcCCchhHHHHHHcCCcEechhHHHHHhhhc
Q 037230 188 KPFTGMTISLMGRLSRTHQYWRTTIEKHGGKVAASPIGLTCLVASPAERERGGSSKLVEAMERGTRVVSEAWLIDSIEKQ 267 (815)
Q Consensus 188 ~~L~g~~~~isG~l~~~r~elk~~Ie~~GG~v~~~vs~~thlI~t~~e~~k~~s~K~~~A~~~gI~IVsed~L~d~~~~~ 267 (815)
.|+.|++|++||..+..+++++++|+.+||.++..+.+|||||++.. ..+.|+..|...|++||+.+||.+|++.+
T Consensus 12 ~~~~~~~i~~SG~~~~~~~~l~~~i~~lGg~v~~~~~~~THLI~~~~----~rT~K~l~A~~~g~~IVs~~Wl~~c~~~~ 87 (219)
T 3sqd_A 12 TPELTPFVLFTGFEPVQVQQYIKKLYILGGEVAESAQKCTHLIASKV----TRTVKFLTAISVVKHIVTPEWLEECFRCQ 87 (219)
T ss_dssp CGGGCCEEEECSCCHHHHHHHHHHHHHTTCEECSSGGGCSEEECSSC----CCCHHHHHHTTTCSEEECHHHHHHHHHHT
T ss_pred CCCCCeEEEEeCCChHHHHHHHHHHHHCCCEEeCCCCCceEEEECCC----CCCHHHHHHHHcCCCEecHHHHHHHHHcC
Confidence 57899999999966666889999999999999988669999999862 22569999999999999999999999999
Q ss_pred CCCCCcccccc
Q 037230 268 EAQPLEAYDLV 278 (815)
Q Consensus 268 ~~l~~~~Y~i~ 278 (815)
..+++.+|.+.
T Consensus 88 ~~l~e~~y~l~ 98 (219)
T 3sqd_A 88 KFIDEQNYILR 98 (219)
T ss_dssp SCCCSGGGBCC
T ss_pred CCCChHhccCC
Confidence 99999999987
No 33
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*
Probab=98.84 E-value=5.4e-09 Score=110.68 Aligned_cols=88 Identities=17% Similarity=0.347 Sum_probs=75.1
Q ss_pred CCCCCCCCcEEEE-eeccccchHHHHHHHHHcCCEEEeecc-ceeEEEeChHHHhcCCchhHHHHHHcC-CcEechhHHH
Q 037230 185 AAVKPFTGMTISL-MGRLSRTHQYWRTTIEKHGGKVAASPI-GLTCLVASPAERERGGSSKLVEAMERG-TRVVSEAWLI 261 (815)
Q Consensus 185 p~~~~L~g~~~~i-sG~l~~~r~elk~~Ie~~GG~v~~~vs-~~thlI~t~~e~~k~~s~K~~~A~~~g-I~IVsed~L~ 261 (815)
|.+.+|.|++|++ +|....++++|.++|.++||+++...+ .++|+|++. . +.|++.|.+.| ++||+++||.
T Consensus 6 ~~s~lF~G~~f~V~sg~~~~~k~~L~~lI~~~GG~v~~n~~~~t~~iIa~~-----~-~~k~~~~~~~g~~~IV~p~Wv~ 79 (263)
T 3ii6_X 6 KISNIFEDVEFCVMSGTDSQPKPDLENRIAEFGGYIVQNPGPDTYCVIAGS-----E-NIRVKNIILSNKHDVVKPAWLL 79 (263)
T ss_dssp CCCCTTTTCEEEECCCC--CCHHHHHHHHHHTTCEECSSCCTTEEEEECSS-----C-CHHHHHHHHSCSCCEECHHHHH
T ss_pred cCcccCCCeEEEEEcCCCCCCHHHHHHHHHHcCCEEEecCCCCEEEEEeCC-----C-CHHHHHHHhcCCCCEeehHHHH
Confidence 5578999999998 576667899999999999999998888 888888875 2 47889999887 9999999999
Q ss_pred HHhhhcCCCCCcccccc
Q 037230 262 DSIEKQEAQPLEAYDLV 278 (815)
Q Consensus 262 d~~~~~~~l~~~~Y~i~ 278 (815)
||+..+..+|..+|.+-
T Consensus 80 Dci~~~~llp~~p~~~~ 96 (263)
T 3ii6_X 80 ECFKTKSFVPWQPRFMI 96 (263)
T ss_dssp HHHHHTSCCCCCGGGEE
T ss_pred HHHhcCCcCCCCHHHHh
Confidence 99999999998877553
No 34
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*
Probab=98.83 E-value=4.1e-09 Score=110.23 Aligned_cols=87 Identities=16% Similarity=0.235 Sum_probs=75.0
Q ss_pred CCCCcEEEEeec--cc-cchHHHHHHHHHcCCEEEee-----c---------------------c-ceeEEEeChHHHhc
Q 037230 189 PFTGMTISLMGR--LS-RTHQYWRTTIEKHGGKVAAS-----P---------------------I-GLTCLVASPAERER 238 (815)
Q Consensus 189 ~L~g~~~~isG~--l~-~~r~elk~~Ie~~GG~v~~~-----v---------------------s-~~thlI~t~~e~~k 238 (815)
+|.||.|+++|. .+ ..+.+|+++|+++||++... + + ..+|||++.. .
T Consensus 2 lF~g~~F~ls~~~~~~~~~k~~L~~~I~~~GG~v~~~g~~~lf~~~~~~~~~~~~~~k~~~~~~~~~~t~lia~~~---~ 78 (241)
T 2vxb_A 2 IFDDCVFAFSGPVHEDAYDRSALETVVQDHGGLVLDTGLRPLFNDPFKSKQKKLRHLKPQKRSKSWNQAFVVSDTF---S 78 (241)
T ss_dssp TTTTEEEEECCCSSTTSSCHHHHHHHHHHTTCEECTTCSGGGBCCSCC----CCCSCCBCGGGGGCSEEEEECSSC---C
T ss_pred CCCCcEEEEecCCCCchhhHHHHHHHHHHCCCEEecCcchhhccCccccccccccccccccccccccceEEEcCCC---C
Confidence 699999999999 43 67999999999999999875 1 1 2499999873 2
Q ss_pred CCchhHHHHHHcCCcEechhHHHHHhhhcCCCCCccccccc
Q 037230 239 GGSSKLVEAMERGTRVVSEAWLIDSIEKQEAQPLEAYDLVT 279 (815)
Q Consensus 239 ~~s~K~~~A~~~gI~IVsed~L~d~~~~~~~l~~~~Y~i~s 279 (815)
. +.|+..|..+|||||+.+||.+|++.++.++..+|.+..
T Consensus 79 r-t~K~~~ala~gipiV~~~Wi~dc~~~~~~~~~~~ylL~~ 118 (241)
T 2vxb_A 79 R-KVKYLEALAFNIPCVHPQFIKQCLKMNRVVDFSPYLLAS 118 (241)
T ss_dssp C-CHHHHHHHHHTCCEECTHHHHHHHHHTSCCCSGGGBBEE
T ss_pred C-cHHHHHHHHcCCCEecHHHHHHHHHcCCcCChhhccCCC
Confidence 2 589999999999999999999999999999999999963
No 35
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=98.83 E-value=5.7e-09 Score=107.56 Aligned_cols=91 Identities=13% Similarity=0.196 Sum_probs=79.9
Q ss_pred CCCCCcEEEEeeccccchHHHHHHHHHcCCEEEeecc-ceeEEEeChHHH--hcCCchhHHHHHHcCCcEechhHHHHHh
Q 037230 188 KPFTGMTISLMGRLSRTHQYWRTTIEKHGGKVAASPI-GLTCLVASPAER--ERGGSSKLVEAMERGTRVVSEAWLIDSI 264 (815)
Q Consensus 188 ~~L~g~~~~isG~l~~~r~elk~~Ie~~GG~v~~~vs-~~thlI~t~~e~--~k~~s~K~~~A~~~gI~IVsed~L~d~~ 264 (815)
..+.+++|+++|.....+..|.++|+.+||.++..++ .|||||+...+. ... +.|+..|...|++||+.+||.+|+
T Consensus 3 ~~~~~~~i~~sg~~~~~~~~l~~~~~~~G~~~~~~~~~~~THlI~~~~~~~~~~r-t~K~~~a~~~g~~IV~~~Wl~~~~ 81 (229)
T 1l0b_A 3 RAERDISMVVSGLTPKEVMIVQKFAEKYRLALTDVITEETTHVIIKTDAEFVCER-TLKYFLGIAGGKWIVSYSWVIKSI 81 (229)
T ss_dssp CCCCCCEEEEESCCHHHHHHHHHHHHHTTCEECSSCCSSCCEEEECBCTTSEECC-CHHHHHHHHTTCEEEETHHHHHHH
T ss_pred CCCCCeEEEEcCCCHHHHHHHHHHHHHcCCEEeCCcCCCCCEEEEcCCccccccc-cHHHHHHHHCCCcEecHHHHHHHH
Confidence 4578999999998776788999999999999999999 999999997421 012 689999999999999999999999
Q ss_pred hhcCCCCCccccccc
Q 037230 265 EKQEAQPLEAYDLVT 279 (815)
Q Consensus 265 ~~~~~l~~~~Y~i~s 279 (815)
..+..+++.+|.+..
T Consensus 82 ~~~~~~~e~~y~~~~ 96 (229)
T 1l0b_A 82 QERKLLSVHEFEVKG 96 (229)
T ss_dssp TTTSCCCSGGGBCCE
T ss_pred HCCCcCChHHeEecc
Confidence 999999999999863
No 36
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A
Probab=98.78 E-value=5.8e-09 Score=106.11 Aligned_cols=88 Identities=16% Similarity=0.162 Sum_probs=76.9
Q ss_pred CCcEEEEeeccccchHHHHHHHHHcCCEEEeecc-ceeEEEeChHHH--hcCCchhHHHHHHcCCcEechhHHHHHhhhc
Q 037230 191 TGMTISLMGRLSRTHQYWRTTIEKHGGKVAASPI-GLTCLVASPAER--ERGGSSKLVEAMERGTRVVSEAWLIDSIEKQ 267 (815)
Q Consensus 191 ~g~~~~isG~l~~~r~elk~~Ie~~GG~v~~~vs-~~thlI~t~~e~--~k~~s~K~~~A~~~gI~IVsed~L~d~~~~~ 267 (815)
++++|+++|..+..++.+.++|+.+||.++..++ .|||||+...+- ... +.|+..|...|++||+.+||.+|++.+
T Consensus 3 ~~~~~~~sg~~~~~~~~l~~~~~~~G~~~~~~~~~~~THli~~~~~~~~~~r-t~k~~~a~~~g~~IV~~~Wl~~~~~~~ 81 (214)
T 1t15_A 3 KRMSMVVSGLTPEEFMLVYKFARKHHITLTNLITEETTHVVMKTDAEFVCER-TLKYFLGIAGGKWVVSYFWVTQSIKER 81 (214)
T ss_dssp -CCEEEEESCCHHHHHHHHHHHHHHTCEECSSCCTTCCEEEECBCTTSEECC-BHHHHHHHHTTCEEEETHHHHHHHHTT
T ss_pred CcEEEEECCCCHHHHHHHHHHHHHhCCEEeCccCCCCcEEEEeCCcccchhh-hHHHHHHHhcCCEEeCHHHHHHHHHCC
Confidence 4789999998777789999999999999999999 999999997430 012 589999999999999999999999999
Q ss_pred CCCCCccccccc
Q 037230 268 EAQPLEAYDLVT 279 (815)
Q Consensus 268 ~~l~~~~Y~i~s 279 (815)
+.+++.+|.+..
T Consensus 82 ~~~~e~~y~~~~ 93 (214)
T 1t15_A 82 KMLNEHDFEVRG 93 (214)
T ss_dssp SCCCGGGGBCCE
T ss_pred CcCChHHeEeec
Confidence 999999999873
No 37
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Probab=98.77 E-value=6.9e-09 Score=105.83 Aligned_cols=85 Identities=12% Similarity=0.125 Sum_probs=76.4
Q ss_pred CcEEEEeeccccchHHHHHHHHHcCCEEEeecc-ceeEEEeChHHHhcCCchhHHHHHHcCCcEechhHHHHHhhhcCCC
Q 037230 192 GMTISLMGRLSRTHQYWRTTIEKHGGKVAASPI-GLTCLVASPAERERGGSSKLVEAMERGTRVVSEAWLIDSIEKQEAQ 270 (815)
Q Consensus 192 g~~~~isG~l~~~r~elk~~Ie~~GG~v~~~vs-~~thlI~t~~e~~k~~s~K~~~A~~~gI~IVsed~L~d~~~~~~~l 270 (815)
+++|+++|.....++.|.++|+.+||.++..++ .|||||+..... .. +.|+..|...|++||+.+||.+|+..++.+
T Consensus 2 ~~vi~~sg~~~~~~~~l~~~~~~~G~~~~~~~~~~~THlV~~~~~~-~r-t~K~l~a~~~g~~IV~~~Wl~~c~~~~~~~ 79 (210)
T 2nte_A 2 PLVLIGSGLSSEQQKMLSELAVILKAKKYTEFDSTVTHVVVPGDAV-QS-TLKCMLGILNGCWILKFEWVKACLRRKVCE 79 (210)
T ss_dssp CCEEEESSCCHHHHHHHHHHHHHTTCEEESSCCTTCCEEEESSSSC-CC-SHHHHHHHHTTCEEEETHHHHHHHHHTSCC
T ss_pred CEEEEECCCCHHHHHHHHHHHHHcCCEEeCCCCCCCeEEEEcCCCc-ch-HHHHHHHHhcCCEEecHHHHHHHHHcCCcC
Confidence 689999998777789999999999999999999 999999987432 22 689999999999999999999999999999
Q ss_pred CCcccccc
Q 037230 271 PLEAYDLV 278 (815)
Q Consensus 271 ~~~~Y~i~ 278 (815)
++.+|.+.
T Consensus 80 ~e~~y~~~ 87 (210)
T 2nte_A 80 QEEKYEIP 87 (210)
T ss_dssp CGGGTBCT
T ss_pred ChhhccCC
Confidence 99999986
No 38
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=98.77 E-value=7.5e-10 Score=130.09 Aligned_cols=76 Identities=26% Similarity=0.334 Sum_probs=0.0
Q ss_pred CCCCCCcEEEEeeccccchHHHHHHHHHcCCEEEeecc-ceeEEEeChHHHhcCCchhHHHHHHcCCcEechhHHHHHhh
Q 037230 187 VKPFTGMTISLMGRLSRTHQYWRTTIEKHGGKVAASPI-GLTCLVASPAERERGGSSKLVEAMERGTRVVSEAWLIDSIE 265 (815)
Q Consensus 187 ~~~L~g~~~~isG~l~~~r~elk~~Ie~~GG~v~~~vs-~~thlI~t~~e~~k~~s~K~~~A~~~gI~IVsed~L~d~~~ 265 (815)
..+|.|++|||||+|+.+|++++++|+++||+|+++|| +|+|||+++. + ++|+++|+++||+||+|++|.+++.
T Consensus 585 ~~~l~G~~~v~TG~l~~~R~e~~~~i~~~Ggkv~~sVSkkTd~lV~G~~----~-gsKl~KA~~lgI~Ii~E~~f~~~l~ 659 (667)
T 1dgs_A 585 SDLLSGLTFVLTGELSRPREEVKALLGRLGAKVTDSVSRKTSYLVVGEN----P-GSKLEKARALGVAVLTEEEFWRFLK 659 (667)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccCCCEEEEeCCCCCCHHHHHHHHHHcCCEEcCcccCCeeEEEECCC----C-ChHHHHHHHCCCeEEeHHHHHHHHh
Confidence 35799999999999987999999999999999999999 9999999973 5 4999999999999999999999886
Q ss_pred hc
Q 037230 266 KQ 267 (815)
Q Consensus 266 ~~ 267 (815)
.+
T Consensus 660 ~~ 661 (667)
T 1dgs_A 660 EK 661 (667)
T ss_dssp --
T ss_pred cC
Confidence 43
No 39
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=98.75 E-value=9.3e-10 Score=129.38 Aligned_cols=73 Identities=33% Similarity=0.434 Sum_probs=0.0
Q ss_pred CCCCCcEEEEeeccc-cchHHHHHHHHHcCCEEEeecc-ceeEEEeChHHHhcCCchhHHHHHHcCCcEechhHHHHHhh
Q 037230 188 KPFTGMTISLMGRLS-RTHQYWRTTIEKHGGKVAASPI-GLTCLVASPAERERGGSSKLVEAMERGTRVVSEAWLIDSIE 265 (815)
Q Consensus 188 ~~L~g~~~~isG~l~-~~r~elk~~Ie~~GG~v~~~vs-~~thlI~t~~e~~k~~s~K~~~A~~~gI~IVsed~L~d~~~ 265 (815)
.+|.|++|||||+|+ .+|++++++|+++||+|+++|| +|+|||+++. + ++|+++|+++||+||+|++|.+++.
T Consensus 596 ~~l~G~~~v~TG~l~~~~R~e~~~~i~~~Ggkv~~sVSkkTd~lV~G~~----~-gsKl~KA~~lgI~Ii~E~~f~~~l~ 670 (671)
T 2owo_A 596 SPFAGKTVVLTGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEA----A-GSKLAKAQELGIEVIDEAEMLRLLG 670 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcccCcEEEEcCCCCCCCHHHHHHHHHHcCCEEeCcccCceeEEEECCC----C-ChHHHHHHHCCCcEEcHHHHHHHhc
Confidence 469999999999998 4899999999999999999999 9999999973 5 4999999999999999999998764
No 40
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*
Probab=98.73 E-value=1.1e-08 Score=106.44 Aligned_cols=89 Identities=17% Similarity=0.108 Sum_probs=76.4
Q ss_pred CCCCCCcEEEEeeccccchHHHHHHHHHcCCEEEe--ecc-ceeEEEeChHHHhcCCchhHHHHHHcCCcEechhHHHHH
Q 037230 187 VKPFTGMTISLMGRLSRTHQYWRTTIEKHGGKVAA--SPI-GLTCLVASPAERERGGSSKLVEAMERGTRVVSEAWLIDS 263 (815)
Q Consensus 187 ~~~L~g~~~~isG~l~~~r~elk~~Ie~~GG~v~~--~vs-~~thlI~t~~e~~k~~s~K~~~A~~~gI~IVsed~L~d~ 263 (815)
.+..++++|++||..+..+.++++.|+++||.++. .++ +|||||++... . +-|+-.|...|+.||+.+||.+|
T Consensus 4 ~~~~~~~~~~~Sg~~~~~~~~l~~~i~~LGg~~~~~~~~~~~~THlV~~~~~---R-T~K~l~aia~G~wIvs~~wl~~s 79 (235)
T 3al2_A 4 GSLKKQYIFQLSSLNPQERIDYCHLIEKLGGLVIEKQCFDPTCTHIVVGHPL---R-NEKYLASVAAGKWVLHRSYLEAC 79 (235)
T ss_dssp ----CCCEEEEESCCHHHHHHHHHHHHHTTCEECCSSSCCTTCCEEEESSCC---C-SHHHHHHHHTTCEEECTHHHHHH
T ss_pred CcCCCCEEEEEcCCCHHHHHHHHHHHHHcCCEEeccCCCCCCCcEEEECCCC---C-CHHHHHHHHcCCcCccHHHHHHH
Confidence 44567899999998776788999999999999986 477 99999999742 2 68999999999999999999999
Q ss_pred hhhcCCCCCccccccc
Q 037230 264 IEKQEAQPLEAYDLVT 279 (815)
Q Consensus 264 ~~~~~~l~~~~Y~i~s 279 (815)
++.+..+++.+|.+..
T Consensus 80 ~~~g~~l~E~~ye~~~ 95 (235)
T 3al2_A 80 RTAGHFVQEEDYEWGS 95 (235)
T ss_dssp HHHTSCCCSGGGBTTS
T ss_pred HHcCCCCChhceeecC
Confidence 9999999999999873
No 41
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A
Probab=98.68 E-value=2.8e-08 Score=101.51 Aligned_cols=85 Identities=22% Similarity=0.289 Sum_probs=71.5
Q ss_pred CCCCCCcEEEEeeccccchHHHHHHHHHcCCEEEeeccceeEEEeChHHHhcCCchhHHHHHHcCCcEechhHHHHHhhh
Q 037230 187 VKPFTGMTISLMGRLSRTHQYWRTTIEKHGGKVAASPIGLTCLVASPAERERGGSSKLVEAMERGTRVVSEAWLIDSIEK 266 (815)
Q Consensus 187 ~~~L~g~~~~isG~l~~~r~elk~~Ie~~GG~v~~~vs~~thlI~t~~e~~k~~s~K~~~A~~~gI~IVsed~L~d~~~~ 266 (815)
+..+.+++|+++|... .+++++|+.+||.++.++++|||||+... .. +.|+..|...|++||+.+||.+|++.
T Consensus 7 ~~~~~~~~v~~sG~~~---~~~~~~i~~lGg~~~~~~~~~THlI~~~~---~r-t~K~l~a~~~g~~IV~~~Wl~~~~~~ 79 (209)
T 2etx_A 7 NQESTAPKVLFTGVVD---ARGERAVLALGGSLAGSAAEASHLVTDRI---RR-TVKFLCALGRGIPILSLDWLHQSRKA 79 (209)
T ss_dssp -----CCEEEECSSCC---HHHHHHHHHTTCEECSSTTTCSEEECSSC---CC-SHHHHHHHHHTCCEECTHHHHHHHHH
T ss_pred cccCCCcEEEEeCCCc---HHHHHHHHHCCCEEeCCCCCceEEEECCC---CC-CHHHHHHHhcCCccccHHHHHHHHHc
Confidence 4568899999999874 45799999999999988889999999852 12 68999999999999999999999999
Q ss_pred cCCCCCcccccc
Q 037230 267 QEAQPLEAYDLV 278 (815)
Q Consensus 267 ~~~l~~~~Y~i~ 278 (815)
+..+++.+|.+.
T Consensus 80 ~~~l~e~~y~~~ 91 (209)
T 2etx_A 80 GFFLPPDEYVVT 91 (209)
T ss_dssp TSCCCSGGGBCC
T ss_pred CCCCChhhcccc
Confidence 999999999986
No 42
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*
Probab=98.59 E-value=8.1e-08 Score=97.49 Aligned_cols=84 Identities=18% Similarity=0.235 Sum_probs=75.1
Q ss_pred CcEEEEeeccccchHHHHHHHHHcCC-EEEeecc-ceeEEEeChHHHhcCCchhHHHHHHcCCcEechhHHHHHhhhcCC
Q 037230 192 GMTISLMGRLSRTHQYWRTTIEKHGG-KVAASPI-GLTCLVASPAERERGGSSKLVEAMERGTRVVSEAWLIDSIEKQEA 269 (815)
Q Consensus 192 g~~~~isG~l~~~r~elk~~Ie~~GG-~v~~~vs-~~thlI~t~~e~~k~~s~K~~~A~~~gI~IVsed~L~d~~~~~~~ 269 (815)
..+|+++|.-+..+.++.++|+.+|| .++..++ .|||||++.. .. +.|+..|...|++||+.+||.+|++.++.
T Consensus 11 ~~~~~~sgl~~~~~~~l~~~i~~lgG~~~~~~~~~~~THlv~~~~---~r-T~K~l~ai~~g~~Iv~~~Wv~~~~~~g~~ 86 (199)
T 3u3z_A 11 TRTLVMTSMPSEKQNVVIQVVDKLKGFSIAPDVCETTTHVLSGKP---LR-TLNVLLGIARGCWVLSYDWVLWSLELGHW 86 (199)
T ss_dssp CCEEEEESCCHHHHHHHHHHHHHHCSCEEESSCCTTEEEEEESSC---CC-BHHHHHHHHTTCEEEETHHHHHHHHHTSC
T ss_pred CeEEEEcCCCHHHHHHHHHHHHHcCCcEEecCCCCCCeEEEECCC---CC-CHHHHHHHHCCCcEEeHHHHHHHhhCCCC
Confidence 56789999888889999999999988 6778898 8999999874 22 68999999999999999999999999999
Q ss_pred CCCccccccc
Q 037230 270 QPLEAYDLVT 279 (815)
Q Consensus 270 l~~~~Y~i~s 279 (815)
+++.+|.+..
T Consensus 87 l~e~~y~~~~ 96 (199)
T 3u3z_A 87 ISEEPFELSH 96 (199)
T ss_dssp CCSGGGBCTT
T ss_pred CChhhccccC
Confidence 9999999873
No 43
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A*
Probab=98.33 E-value=2.9e-07 Score=94.88 Aligned_cols=82 Identities=21% Similarity=0.254 Sum_probs=71.5
Q ss_pred CCCcEEEEeeccccchHHHHHHHHHcCCEEEeeccceeEEEeChHHHhcCCchhHHHHHHcCCcEechhHHHHHhhhcCC
Q 037230 190 FTGMTISLMGRLSRTHQYWRTTIEKHGGKVAASPIGLTCLVASPAERERGGSSKLVEAMERGTRVVSEAWLIDSIEKQEA 269 (815)
Q Consensus 190 L~g~~~~isG~l~~~r~elk~~Ie~~GG~v~~~vs~~thlI~t~~e~~k~~s~K~~~A~~~gI~IVsed~L~d~~~~~~~ 269 (815)
-++.+|++||-... +.+++|+.+||.++.++++|||||+... .. +.|+..|...|++||+.+||.+|++.+..
T Consensus 6 ~~~~~v~fSG~~~~---~~~~~i~~lGg~v~~~~~~~THlV~~~~---~R-T~K~l~Aia~g~~IVs~~Wl~~~~~~~~~ 78 (220)
T 3l41_A 6 SKRVYITFTGYDKK---PSIDNLKKLDMSITSNPSKCTHLIAPRI---LR-TSKFLCSIPYGPCVVTMDWINSCLKTHEI 78 (220)
T ss_dssp -CCEEEEECSCSSC---CCCGGGGGGTEEECSCTTTCSEEECSSC---CC-BHHHHHHGGGCCEEECHHHHHHHHHHTSC
T ss_pred cceEEEEEeccCCC---CCcchHhhcceeeccCchhhhhhhhhhH---hh-hcceeecCCCCCeEEEhHHHHhhhhhhhc
Confidence 45788999998754 2489999999999998889999999862 22 78999999999999999999999999999
Q ss_pred CCCcccccc
Q 037230 270 QPLEAYDLV 278 (815)
Q Consensus 270 l~~~~Y~i~ 278 (815)
+++.+|.+.
T Consensus 79 l~e~~y~l~ 87 (220)
T 3l41_A 79 VDEEPYLLN 87 (220)
T ss_dssp CCSGGGBCC
T ss_pred cccCccccC
Confidence 999999986
No 44
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*
Probab=98.32 E-value=3.1e-07 Score=93.16 Aligned_cols=81 Identities=19% Similarity=0.259 Sum_probs=67.4
Q ss_pred CCCCCCcE-EEEeeccccchHHHHHHHHHcCCEEEeeccceeEEEeChHHHhcCCchhHHHHHHcCCcEechhHHHHHhh
Q 037230 187 VKPFTGMT-ISLMGRLSRTHQYWRTTIEKHGGKVAASPIGLTCLVASPAERERGGSSKLVEAMERGTRVVSEAWLIDSIE 265 (815)
Q Consensus 187 ~~~L~g~~-~~isG~l~~~r~elk~~Ie~~GG~v~~~vs~~thlI~t~~e~~k~~s~K~~~A~~~gI~IVsed~L~d~~~ 265 (815)
.+.|.|+. |++++....++++|+.+|+.+||+|+..+..++++|+... . ++..+++||+++||.||+.
T Consensus 117 ~~LF~g~~~~~v~~~~~~~~~~L~~lI~~~GG~v~~~~~~~~iiI~~~~-------~----~~~~~~~~V~p~Wi~DsI~ 185 (199)
T 3u3z_A 117 GTLFADQPVMFVSPASSPPVAKLCELVHLCGGRVSQVPRQASIVIGPYS-------G----KKKATVKYLSEKWVLDSIT 185 (199)
T ss_dssp CCTTTTSCCEEECTTCSSCHHHHHHHHHHTTCCBCSSGGGCSEEESCCC-------S----CCCTTCEEECHHHHHHHHH
T ss_pred chhhCCCeEEEECCCCCCCHHHHHHHHHHcCCEEeccCCCCEEEEeCCc-------h----hccCCCcEEChhHHHHHHH
Confidence 47899995 6666655567999999999999999998887777776531 1 2468999999999999999
Q ss_pred hcCCCCCcccccc
Q 037230 266 KQEAQPLEAYDLV 278 (815)
Q Consensus 266 ~~~~l~~~~Y~i~ 278 (815)
.+..+|+.+|.++
T Consensus 186 ~~~llp~~~Y~~~ 198 (199)
T 3u3z_A 186 QHKVCAPENYLLS 198 (199)
T ss_dssp HTSCCCGGGGBCC
T ss_pred cCCcCChHhccCC
Confidence 9999999999875
No 45
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A
Probab=98.29 E-value=7.7e-07 Score=90.33 Aligned_cols=91 Identities=18% Similarity=0.226 Sum_probs=70.0
Q ss_pred CCCCCCcEEEEeeccc-cchHHHHHHHHHcCCEEEeecc-ce-----eEEEeChHHHhcCCchhHH-HHHHcCCcEechh
Q 037230 187 VKPFTGMTISLMGRLS-RTHQYWRTTIEKHGGKVAASPI-GL-----TCLVASPAERERGGSSKLV-EAMERGTRVVSEA 258 (815)
Q Consensus 187 ~~~L~g~~~~isG~l~-~~r~elk~~Ie~~GG~v~~~vs-~~-----thlI~t~~e~~k~~s~K~~-~A~~~gI~IVsed 258 (815)
.++|.|+.|++.|.+. ..+++|+.+|+.+||++...+. .. .++|+...+.... ..+++ .|++.+++||+++
T Consensus 113 ~~lF~g~~~~~~~~~~~~~~~~l~~li~~~GG~v~~~~~~~~~~~~~~~ivi~~~~~~~~-~~~~~~~a~~~~~~iV~~~ 191 (214)
T 1t15_A 113 RKIFRGLEICCYGPFTNMPTDQLEWMVQLCGASVVKELSSFTLGTGVHPIVVVQPDAWTE-DNGFHAIGQMCEAPVVTRE 191 (214)
T ss_dssp SCTTTTCEEEECSCCSSSCHHHHHHHHHHTTCEECCSGGGCCCSTTCCEEEEECGGGCSS-CGGGGSSTTTCSSCEEEHH
T ss_pred CcccCCCEEEEEecCCCCCHHHHHHHHHHCCCEEecCccccccCCCCccEEEECCCcccc-hhhHHHHHHhcCCcEEecc
Confidence 5689999999999875 5699999999999999998876 21 3443333322111 12332 3566899999999
Q ss_pred HHHHHhhhcCCCCCcccccc
Q 037230 259 WLIDSIEKQEAQPLEAYDLV 278 (815)
Q Consensus 259 ~L~d~~~~~~~l~~~~Y~i~ 278 (815)
||.||+..+..+|+.+|.+.
T Consensus 192 Wi~dsi~~~~~l~~~~Y~l~ 211 (214)
T 1t15_A 192 WVLDSVALYQCQELDTYLIP 211 (214)
T ss_dssp HHHHHHHHTSCCCSGGGBCC
T ss_pred HHHHhHhhcCcCCCcceeec
Confidence 99999999999999999876
No 46
>2ep8_A Pescadillo homolog 1; A/B/A 3 layers, nucleolus, ribosome biogenesis, DNA damage, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.29 E-value=1.1e-06 Score=79.41 Aligned_cols=82 Identities=21% Similarity=0.313 Sum_probs=66.1
Q ss_pred CCCCCCCCCcEEEEeeccccchHHHHHHHHHcCCEEEee-----------cc-ceeEEEeChHHHhcCCchhHHHHHHcC
Q 037230 184 GAAVKPFTGMTISLMGRLSRTHQYWRTTIEKHGGKVAAS-----------PI-GLTCLVASPAERERGGSSKLVEAMERG 251 (815)
Q Consensus 184 ~p~~~~L~g~~~~isG~l~~~r~elk~~Ie~~GG~v~~~-----------vs-~~thlI~t~~e~~k~~s~K~~~A~~~g 251 (815)
.|.+..|+|++|++.+.. +++.++.+|..+||+++.. .+ .+||+|+..... .+ +..+
T Consensus 7 ~~~~~LF~g~~F~i~~e~--p~~~le~~I~~~GG~v~~~~~~~~g~~~~~~~~~iTh~I~drp~~-----~~----~~~~ 75 (100)
T 2ep8_A 7 GKHKKLFEGLKFFLNREV--PREALAFIIRSFGGEVSWDKSLCIGATYDVTDSRITHQIVDRPGQ-----QT----SVIG 75 (100)
T ss_dssp SCSCCTTSSCEEECCSSS--CHHHHHHHHHHTTCEEECCTTTSSCCCSCTTCTTCCEEECSCTTT-----SC----CBTT
T ss_pred CchHHHcCCcEEEEecCC--CHHHHHHHHHHcCCEEEeccccccCcccccCCCceEEEEecccch-----hh----hcCC
Confidence 345678999999998754 6899999999999999865 24 799999986321 11 2356
Q ss_pred CcEechhHHHHHhhhcCCCCCcccc
Q 037230 252 TRVVSEAWLIDSIEKQEAQPLEAYD 276 (815)
Q Consensus 252 I~IVsed~L~d~~~~~~~l~~~~Y~ 276 (815)
..+|.++|+.||+..+..+|+.+|.
T Consensus 76 r~~VqPqWV~Dcin~~~lLp~~~Y~ 100 (100)
T 2ep8_A 76 RCYVQPQWVFDSVNARLLLPVAEYF 100 (100)
T ss_dssp BEEECTHHHHHHHHHTSCCCTTTCC
T ss_pred CeEEcchHHHHHHhcCCcCChhhcC
Confidence 7999999999999999999998883
No 47
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=98.29 E-value=8.2e-08 Score=101.27 Aligned_cols=88 Identities=19% Similarity=0.317 Sum_probs=69.6
Q ss_pred CCCCCCCCcEEEE-eeccc------cchHHHHHHHHHcCCEEEeecc-c-----eeEEEeChHHHhcCCchhHHHHHHcC
Q 037230 185 AAVKPFTGMTISL-MGRLS------RTHQYWRTTIEKHGGKVAASPI-G-----LTCLVASPAERERGGSSKLVEAMERG 251 (815)
Q Consensus 185 p~~~~L~g~~~~i-sG~l~------~~r~elk~~Ie~~GG~v~~~vs-~-----~thlI~t~~e~~k~~s~K~~~A~~~g 251 (815)
|.++.|.|++|+| +|.+. .++++|..+|.++||+++.... . +||+|+... +.|++.+...|
T Consensus 1 ~~s~lF~g~~f~v~~~~~~p~~~~~~~~~~L~~li~~~GG~~~~~~~~~t~~~~~~~iI~~~~------t~k~~~~~~~~ 74 (264)
T 1z56_C 1 PISNIFAGLLFYVLSDYVTEDTGIRITRAELEKTIVEHGGKLIYNVILKRHSIGDVRLISCKT------TTECKALIDRG 74 (264)
T ss_dssp --CCCCCTTCCCCSEEEECCCCCSSSSCCCTHHHHHHHHTTSCCCSSCCCCCSSCCEEEECSC------CGGGGGGTTTT
T ss_pred CccccCCCcEEEEEcCCCCccccccCCHHHHHHHHHHcCCEEeecCCCCccCccceEEEecCC------cHHHHHHHhCC
Confidence 3467899999987 66543 3789999999999999876444 3 467888752 46777777788
Q ss_pred CcEechhHHHHHhhhcCCCCCcccccc
Q 037230 252 TRVVSEAWLIDSIEKQEAQPLEAYDLV 278 (815)
Q Consensus 252 I~IVsed~L~d~~~~~~~l~~~~Y~i~ 278 (815)
++||.++||.||+..++.+|..+|.+-
T Consensus 75 ~~vV~p~Wv~dci~~~~llp~~~y~~~ 101 (264)
T 1z56_C 75 YDILHPNWVLDCIAYKRLILIEPNYCF 101 (264)
T ss_dssp CCCBCSSTTHHHHSSCSCCCCCSCBSC
T ss_pred CCEEechHHHHHhhcCCCCCCChHHhh
Confidence 999999999999999999999887553
No 48
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=98.24 E-value=1.1e-06 Score=90.37 Aligned_cols=91 Identities=18% Similarity=0.217 Sum_probs=61.9
Q ss_pred CCCCCCcEEEEeeccc-cchHHHHHHHHHcCCEEEeecc-c-----eeE-EEeChHHHhcCCchhHHHH-HHcCCcEech
Q 037230 187 VKPFTGMTISLMGRLS-RTHQYWRTTIEKHGGKVAASPI-G-----LTC-LVASPAERERGGSSKLVEA-MERGTRVVSE 257 (815)
Q Consensus 187 ~~~L~g~~~~isG~l~-~~r~elk~~Ie~~GG~v~~~vs-~-----~th-lI~t~~e~~k~~s~K~~~A-~~~gI~IVse 257 (815)
.++|.|+.|++.|.+. ..+++|+.+|+.+||++..... . ++| +|++..... . ..+++.+ ...+++||+.
T Consensus 115 ~~lF~g~~~~~~~~~~~~~~~~l~~li~~~GG~v~~~~~~~~~~~~~~~~vvv~~~~~~-~-~~~~~~l~~~~~i~iVs~ 192 (229)
T 1l0b_A 115 EKLFEGLQIYCCEPFTNMPKDELERMLQLCGASVVKELPLLTRDTGAHPIVLVQPSAWT-E-DNDCPDIGQLCKGRLVMW 192 (229)
T ss_dssp --CCTTCEEEECSCCSSSCHHHHHHHHHHTTCEEECSSSCGGGCCSSCCEEEEC---------------------CEEET
T ss_pred hhhhcCceEEEEecCCCCCHHHHHHHHHHCCCEEeCCcccccccCCCceEEEEcCCccc-h-hhhHHHHHHHcCCeEeeh
Confidence 4689999999999765 5699999999999999998876 3 455 455543211 1 2345433 4589999999
Q ss_pred hHHHHHhhhcCCCCCccccccc
Q 037230 258 AWLIDSIEKQEAQPLEAYDLVT 279 (815)
Q Consensus 258 d~L~d~~~~~~~l~~~~Y~i~s 279 (815)
+||.||+..+..+++.+|.+..
T Consensus 193 ~WlldsI~~~~~~~~~~Y~l~~ 214 (229)
T 1l0b_A 193 DWVLDSISVYRCRDLDAYLVQN 214 (229)
T ss_dssp HHHHHHHHTTSCCCGGGGBCC-
T ss_pred hHHHHHHhcCCcCCccceEccc
Confidence 9999999999999999998873
No 49
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*
Probab=98.11 E-value=2.3e-06 Score=90.45 Aligned_cols=89 Identities=21% Similarity=0.302 Sum_probs=67.2
Q ss_pred CCCCCCCcEEEEeecc---------ccchH-HHHHHHHHcCCEEEeecc-ceeEEEeChHHHhcCCchhHHHHHH---cC
Q 037230 186 AVKPFTGMTISLMGRL---------SRTHQ-YWRTTIEKHGGKVAASPI-GLTCLVASPAERERGGSSKLVEAME---RG 251 (815)
Q Consensus 186 ~~~~L~g~~~~isG~l---------~~~r~-elk~~Ie~~GG~v~~~vs-~~thlI~t~~e~~k~~s~K~~~A~~---~g 251 (815)
+...|+|++|.+.+.- +..+- -++.+|..+||+++..++ .|||||+..... ....++..++ .+
T Consensus 161 ~~~lF~~~~vy~~~~~~~~~~~~~i~~~~l~~~~~~i~~~GG~v~~~l~~~vTHVVv~~~~~---r~~~~~~~~~~~~~~ 237 (263)
T 3ii6_X 161 PLSMFRRHTVYLDSYAVINDLSTKNEGTRLAIKALELRFHGAKVVSCLAEGVSHVIIGEDHS---RVADFKAFRRTFKRK 237 (263)
T ss_dssp GGGTTTTCEEEECCBSSTTCGGGBCCSSHHHHHHHHHHHTTCEEESSCCTTCCEEEECSCCT---THHHHHHHHHTCSSC
T ss_pred cchhhCCeEEEEecccccCCcccccchhHHHHHHHHHHccCCEEecCCCCCceEEEECCCCc---cHHHHHHHHhhcCCC
Confidence 4568999999997631 12233 358999999999999999 899999986211 0012333332 47
Q ss_pred CcEechhHHHHHhhhcCCCCCccccc
Q 037230 252 TRVVSEAWLIDSIEKQEAQPLEAYDL 277 (815)
Q Consensus 252 I~IVsed~L~d~~~~~~~l~~~~Y~i 277 (815)
++||+++|+.+|++.+..+|+..|.|
T Consensus 238 ~~iV~~~Wv~dci~~~~~l~E~~Y~i 263 (263)
T 3ii6_X 238 FKILKESWVTDSIDKCELQEENQYLI 263 (263)
T ss_dssp CEEEETHHHHHHHHTTSCCCGGGTBC
T ss_pred CEEeChHHHHHHHHcCCcCCHhhCCC
Confidence 99999999999999999999999975
No 50
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A
Probab=97.99 E-value=1.1e-05 Score=82.13 Aligned_cols=87 Identities=18% Similarity=0.216 Sum_probs=70.4
Q ss_pred CCCCCCcEEEEeeccccchHHHHHHHHHcCCEEEeecc-c--eeEE-EeChHHHhcCCchhHHHHHHcCCcEechhHHHH
Q 037230 187 VKPFTGMTISLMGRLSRTHQYWRTTIEKHGGKVAASPI-G--LTCL-VASPAERERGGSSKLVEAMERGTRVVSEAWLID 262 (815)
Q Consensus 187 ~~~L~g~~~~isG~l~~~r~elk~~Ie~~GG~v~~~vs-~--~thl-I~t~~e~~k~~s~K~~~A~~~gI~IVsed~L~d 262 (815)
.++|.|++|++++.....+++++.+|+..||++..... . .+++ |+++.+ ..+++.+.+.|++||+.+||.+
T Consensus 113 ~~lF~g~~~~~~~~~~~~~~~l~~li~~~GG~v~~~~~~~~~~~~ivI~~~~d-----~~~~~~~~~~~i~vvs~eWi~~ 187 (209)
T 2etx_A 113 RRLLEGYEIYVTPGVQPPPPQMGEIISCCGGTYLPSMPRSYKPQRVVITCPQD-----FPHCSIPLRVGLPLLSPEFLLT 187 (209)
T ss_dssp SCTTTTCEEEECTTCSSCHHHHHHHHHHTTCEECSSCCCSCCTTEEEECCGGG-----GGGCHHHHHHTCCEECTHHHHH
T ss_pred CCCcCCcEEEEeCCCCCCHHHHHHHHHHCCCEEECCCCCCCCCceEEEECccc-----HHHHHHHHHCCCeEEcHHHHHH
Confidence 47899999999998877789999999999999998765 2 2444 444432 2466778889999999999999
Q ss_pred HhhhcCCCCCccccccc
Q 037230 263 SIEKQEAQPLEAYDLVT 279 (815)
Q Consensus 263 ~~~~~~~l~~~~Y~i~s 279 (815)
|+..+. +++..|.|.+
T Consensus 188 sI~~q~-ld~e~y~l~~ 203 (209)
T 2etx_A 188 GVLKQE-AKPEAFVLSP 203 (209)
T ss_dssp HHHHTC-CCGGGGBCCT
T ss_pred HHHhcc-cChHHheecC
Confidence 999765 5889999874
No 51
>2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase, nonhomologous END joining (NHEJ), DNA damage, DNA repair, DNA replication, DNA synthesis; HET: DNA; NMR {Homo sapiens}
Probab=97.91 E-value=6.3e-06 Score=75.22 Aligned_cols=92 Identities=17% Similarity=0.323 Sum_probs=63.8
Q ss_pred CCCCCCCcEEEEeec--cccchHHHHHHHHHcCCEEEeecc-ceeEEEeChHH-HhcCCchhHHH-HHHcCCcEechhHH
Q 037230 186 AVKPFTGMTISLMGR--LSRTHQYWRTTIEKHGGKVAASPI-GLTCLVASPAE-RERGGSSKLVE-AMERGTRVVSEAWL 260 (815)
Q Consensus 186 ~~~~L~g~~~~isG~--l~~~r~elk~~Ie~~GG~v~~~vs-~~thlI~t~~e-~~k~~s~K~~~-A~~~gI~IVsed~L 260 (815)
+...|+|++|.+... ....++-...++..+||+++..++ .+||+|+-+.. .... -+.++. ....+++||+++|+
T Consensus 8 ~~~~F~g~~v~~~p~~~~~~r~~i~~~~a~~~Ga~v~~~~~~~vTHVVvd~~~s~~~~-l~~l~~~~l~~~~~iV~~~Wv 86 (106)
T 2jw5_A 8 AEEWLSSLRAHVVRTGIGRARAELFEKQIVQHGGQLCPAQGPGVTHIVVDEGMDYERA-LRLLRLPQLPPGAQLVKSAWL 86 (106)
T ss_dssp GGGCGGGSCCCBCTTTCCSSSTTHHHHHHHHTTCCCCSTTCTTCCEEEECSSSCHHHH-HHHTTCSSCCSSCEEEEHHHH
T ss_pred CcCEeCCeEEEEEecCCchHHHHHHHHHHHHcCCEEeeccCCCccEEEEcCCCCHHHH-HHHHhhcccCCCcEEecCchH
Confidence 355688998887522 223345566699999999999999 99999996310 0000 000110 11145789999999
Q ss_pred HHHhhhcCCCCCcccccc
Q 037230 261 IDSIEKQEAQPLEAYDLV 278 (815)
Q Consensus 261 ~d~~~~~~~l~~~~Y~i~ 278 (815)
.+|+..+..+++..|.+.
T Consensus 87 ~dci~~~~llde~~y~~~ 104 (106)
T 2jw5_A 87 SLCLQERRLVDVAGFSIF 104 (106)
T ss_dssp HHHHHTCSCCCGGGTBCS
T ss_pred HHHHhcCcccCccccccc
Confidence 999999999999999775
No 52
>3pc7_A DNA ligase 3; DNA repair, BRCT domain, protein:protein interactions, XRCC1 domain, DNA binding protein; HET: DNA MSE; 1.65A {Homo sapiens} SCOP: c.15.1.2 PDB: 3pc8_C* 1imo_A* 1in1_A* 3qvg_A*
Probab=97.82 E-value=1.7e-05 Score=69.83 Aligned_cols=71 Identities=18% Similarity=0.215 Sum_probs=59.8
Q ss_pred CCCCCcEEEEeeccccchHHHHHHHHHcCCEEEeecc--ceeEEEeChHHHhcCCchhHHHHHHcCCcEechhHHHHHhh
Q 037230 188 KPFTGMTISLMGRLSRTHQYWRTTIEKHGGKVAASPI--GLTCLVASPAERERGGSSKLVEAMERGTRVVSEAWLIDSIE 265 (815)
Q Consensus 188 ~~L~g~~~~isG~l~~~r~elk~~Ie~~GG~v~~~vs--~~thlI~t~~e~~k~~s~K~~~A~~~gI~IVsed~L~d~~~ 265 (815)
..|.|++|.+.+.++. ...+...|.++||.+..... ++||+|+..+ ...+..+|+++|+++|+.
T Consensus 15 diFsg~~~~l~~~v~~-~~~l~RyiiAfgG~v~~~~~~~~vTHvI~~~~-------------~~~~~~~V~p~WI~dcI~ 80 (88)
T 3pc7_A 15 DIFTGVRLYLPPSTPD-FSRLRRYFVAFDGDLVQEFDMTSATHVLGSRD-------------KNPAAQQVSPEWIWACIR 80 (88)
T ss_dssp CCSTTCEECCCTTSTT-HHHHHHHHHHTTCEECCGGGGGGCSEEESCCT-------------TCTTSEEECHHHHHHHHH
T ss_pred hhhcCeEEEccCCcCc-hhhheeeeeecCCEEecccCCCcCeEEecCCC-------------cCCCCcEEchHHHHHHHh
Confidence 5699999999988864 36899999999999987665 7999997763 235789999999999999
Q ss_pred hcCCCCC
Q 037230 266 KQEAQPL 272 (815)
Q Consensus 266 ~~~~l~~ 272 (815)
+++.+|.
T Consensus 81 k~~Ll~~ 87 (88)
T 3pc7_A 81 KRRLVAP 87 (88)
T ss_dssp HTSCCSC
T ss_pred CCcccCC
Confidence 9998864
No 53
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=97.80 E-value=7.6e-06 Score=86.15 Aligned_cols=93 Identities=17% Similarity=0.220 Sum_probs=51.6
Q ss_pred CCCCCCCCcEEEEeeccc-cchHHHHHHHHHcCCEEEeecc-ceeEEEeChHHH--hcCCchhHHHHHH---------cC
Q 037230 185 AAVKPFTGMTISLMGRLS-RTHQYWRTTIEKHGGKVAASPI-GLTCLVASPAER--ERGGSSKLVEAME---------RG 251 (815)
Q Consensus 185 p~~~~L~g~~~~isG~l~-~~r~elk~~Ie~~GG~v~~~vs-~~thlI~t~~e~--~k~~s~K~~~A~~---------~g 251 (815)
++...|+|++|++.|... ...+-++.+|..+||+++..++ .|+|||+..... ... ..++++... .+
T Consensus 156 ~~~~lF~g~~~yl~~~~~~~~~~~l~~~i~~~GG~v~~~l~~~t~hVV~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 234 (264)
T 1z56_C 156 FPLFLFSNRIAYVPRRKISTEDDIIEMKIKLFGGKITDQQSLCNLIIIPYTDPILRKDC-MNEVHEKIKEQIKASDTIPK 234 (264)
T ss_dssp CCCC--------------------CHHHHHHHTTSCCCCSSSCSEEECCCSSTTTHHHH-SSHHHHTTTTTTTSSSSCCC
T ss_pred CchhhhCCeEEEEecCCCchhHHHHHHHHHHcCCEEecccCCCEEEEEeCCCccchHHH-HHHHHHHHHhhcccccccCC
Confidence 345679999999999754 3445678889999999999999 788888764210 000 123443222 24
Q ss_pred C-cEechhHHHHHhhhcCCCCCcccccc
Q 037230 252 T-RVVSEAWLIDSIEKQEAQPLEAYDLV 278 (815)
Q Consensus 252 I-~IVsed~L~d~~~~~~~l~~~~Y~i~ 278 (815)
| +||+++||.+|+..+..+++..|.+.
T Consensus 235 ~~~iV~~~Wv~dci~~~~ll~e~~Y~~~ 262 (264)
T 1z56_C 235 IARVVAPEWVDHSINENCQVPEEDFPVV 262 (264)
T ss_dssp CCEEECTHHHHHHHTTSCCCSSCCC---
T ss_pred CCEEecHHHHHHHHHcCCcCCHHHcCCC
Confidence 4 99999999999999999999999753
No 54
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Probab=97.70 E-value=1.9e-05 Score=80.30 Aligned_cols=83 Identities=17% Similarity=0.214 Sum_probs=61.9
Q ss_pred CCCCCCcEEEEeeccc-cchHHHHHHHHHcCCEEEeec-------c-----------------ceeEEEeChHHHhcCCc
Q 037230 187 VKPFTGMTISLMGRLS-RTHQYWRTTIEKHGGKVAASP-------I-----------------GLTCLVASPAERERGGS 241 (815)
Q Consensus 187 ~~~L~g~~~~isG~l~-~~r~elk~~Ie~~GG~v~~~v-------s-----------------~~thlI~t~~e~~k~~s 241 (815)
.+.|.|+.|+++|.+. ..+++|+.+|+..||++.... + .+||+|+..... +
T Consensus 102 ~~lF~g~~~~l~~~~~~~~~~~l~~lI~~~GG~v~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~~t~~iv~~~~~-~--- 177 (210)
T 2nte_A 102 PKLFDGCYFYLWGTFKHHPKDNLIKLVTAGGGQILSRKPKPDSDVTQTINTVAYHARPDSDQRFCTQYIIYEDLC-N--- 177 (210)
T ss_dssp CCTTTTCEEEECSCCSSSCHHHHHHHHHHTTCEEESSCCCGGGCGGGSSCCCCTTSCTTCGGGTCCEEEEECSCS-S---
T ss_pred ccccCceEEEEeccCCCCCHHHHHHHHHHCCCEEEecCCCCccccccccceeeeccCCCcccccceEEEEecccc-c---
Confidence 4679999999999765 569999999999999998521 1 246676654211 0
Q ss_pred hhHHHHHHcCCcEechhHHHHHhhhcCCCCCc
Q 037230 242 SKLVEAMERGTRVVSEAWLIDSIEKQEAQPLE 273 (815)
Q Consensus 242 ~K~~~A~~~gI~IVsed~L~d~~~~~~~l~~~ 273 (815)
.....|+..+|++|+.+||.||+...+.+|..
T Consensus 178 ~~~~~~~~~~v~~V~~~Wl~dcI~~~~llp~~ 209 (210)
T 2nte_A 178 YHPERVRQGKVWKAPSSWFIDCVMSFELLPLD 209 (210)
T ss_dssp CCCSCSEETTEEEEEHHHHHHHHHHTSCCCSC
T ss_pred cCHHHHhccCcccccHHHHHHHHHhCeeccCC
Confidence 11123455789999999999999999988764
No 55
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=97.68 E-value=0.00011 Score=75.49 Aligned_cols=85 Identities=16% Similarity=0.211 Sum_probs=68.3
Q ss_pred CCCCCCcEEEEeeccccchHHHHHHHHHcCCEEEeecc-c-------------eeEEEeChHHHhcCCchhHHHHHHcCC
Q 037230 187 VKPFTGMTISLMGRLSRTHQYWRTTIEKHGGKVAASPI-G-------------LTCLVASPAERERGGSSKLVEAMERGT 252 (815)
Q Consensus 187 ~~~L~g~~~~isG~l~~~r~elk~~Ie~~GG~v~~~vs-~-------------~thlI~t~~e~~k~~s~K~~~A~~~gI 252 (815)
.+.|.|+.|++++.+..++++++.+|+..||++...+. . ...||+++++ ...++.+.+.||
T Consensus 120 ~~LF~G~~f~it~~~~~~~~~l~~lI~~~GG~v~~~~p~~~~~~~~~~~~~~~~~ivis~~~d-----~~~~~~~~~~~~ 194 (219)
T 3sqd_A 120 SPLFKAKYFYITPGICPSLSTMKAIVECAGGKVLSKQPSFRKLMEHKQNSSLSEIILISCEND-----LHLCREYFARGI 194 (219)
T ss_dssp SCTTTTEEEEECTTCSSCHHHHHHHHHHTTCEEESSCCCHHHHHHHHHCTTSCEEEEEECGGG-----GGGGHHHHHTTC
T ss_pred ccccCCcEEEEeCCCCCCHHHHHHHHHHCCCEEECCCCchHHhhhhhcccCCCCEEEEecccH-----HHHHHHHHHCCC
Confidence 46899999999999887899999999999999998753 1 2456777643 357888888999
Q ss_pred cEechhHHHHHhhhcCCCCCccccc
Q 037230 253 RVVSEAWLIDSIEKQEAQPLEAYDL 277 (815)
Q Consensus 253 ~IVsed~L~d~~~~~~~l~~~~Y~i 277 (815)
+|++.|||.+++-+++ ++.+.|.+
T Consensus 195 ~v~s~E~il~~Il~q~-ld~~~~~~ 218 (219)
T 3sqd_A 195 DVHNAEFVLTGVLTQT-LDYESYKF 218 (219)
T ss_dssp CCEETHHHHHHHHHTC-CCTTTSBC
T ss_pred cEEeHHHHHHHHHhee-ecchhccc
Confidence 9999999999998664 45555554
No 56
>2coe_A Deoxynucleotidyltransferase, terminal variant; BRCT domain, DNA polymerase, teminal deoxynucleotidyltransferase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.59 E-value=0.00011 Score=68.25 Aligned_cols=90 Identities=14% Similarity=0.266 Sum_probs=66.9
Q ss_pred CCCCCCCCCcEEEEeec-ccc-chHHHHHHHHHcCCEEEeecc-ceeEEEeChHHHhcCCchhHHHHHH-------cCCc
Q 037230 184 GAAVKPFTGMTISLMGR-LSR-THQYWRTTIEKHGGKVAASPI-GLTCLVASPAERERGGSSKLVEAME-------RGTR 253 (815)
Q Consensus 184 ~p~~~~L~g~~~~isG~-l~~-~r~elk~~Ie~~GG~v~~~vs-~~thlI~t~~e~~k~~s~K~~~A~~-------~gI~ 253 (815)
.|+...|.|++|.|... +.. .++-+++++..+||++...++ .+||||+.+... ..+..-++ .+.+
T Consensus 15 ~~p~~~F~g~~iy~v~~~~g~~R~~~l~~l~r~~G~~V~~~ls~~VTHVVve~~~~-----~e~~~~l~~~~l~~~~~~~ 89 (120)
T 2coe_A 15 SPQDIKFQDLVVFILEKKMGTTRRALLMELARRKGFRVENELSDSVTHIVAENNSG-----SDVLEWLQAQKVQVSSQPE 89 (120)
T ss_dssp CSSCCSCTTCEEEEECTTTCHHHHHHHHHHHHHHTCEECSSCCTTCCEEEESSCCH-----HHHHHHHHHCCCCCSSCCE
T ss_pred CCcccccCCeEEEEeecccchHHHHHHHHHHHHcCCEEeeccCCCcCEEEecCCCH-----HHHHHHHhccccccccccE
Confidence 34566799999999654 333 356688999999999999999 999999953211 22322222 2579
Q ss_pred EechhHHHHHhhhcCCCCC-cccccc
Q 037230 254 VVSEAWLIDSIEKQEAQPL-EAYDLV 278 (815)
Q Consensus 254 IVsed~L~d~~~~~~~l~~-~~Y~i~ 278 (815)
||+..||.+|++.+.++++ ..|.|.
T Consensus 90 lv~i~Wl~esmk~g~lv~ee~~~~l~ 115 (120)
T 2coe_A 90 LLDVSWLIECIGAGKPVEMTGKHQLS 115 (120)
T ss_dssp EEEHHHHHHHHHTTSCCCCSSSSBCC
T ss_pred EeecHHHHHHHHcCCccCcccceEec
Confidence 9999999999999999997 555554
No 57
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B
Probab=97.58 E-value=0.0002 Score=75.41 Aligned_cols=85 Identities=19% Similarity=0.288 Sum_probs=65.3
Q ss_pred CCCCCCCcEEEEeecccc-chHHHHHHHHHcCCEEEeecc-----------ceeEEEeChHHHhcCCchhHHHHHHcCCc
Q 037230 186 AVKPFTGMTISLMGRLSR-THQYWRTTIEKHGGKVAASPI-----------GLTCLVASPAERERGGSSKLVEAMERGTR 253 (815)
Q Consensus 186 ~~~~L~g~~~~isG~l~~-~r~elk~~Ie~~GG~v~~~vs-----------~~thlI~t~~e~~k~~s~K~~~A~~~gI~ 253 (815)
..++|.|+.|+++|.... .++.+..+++.+||++..... .++.+|+... .. ..+.+.|.+.+||
T Consensus 152 ~~~LF~G~~I~i~~~~~~~~~~~~~~Il~~~Ga~vv~~~~s~~~~~d~~~~~~~viv~d~~---~~-~~~~~~a~~~~i~ 227 (259)
T 1kzy_C 152 RENPFQNLKVLLVSDQQQNFLELWSEILMTGGAASVKQHHSSAHNKDIALGVFDVVVTDPS---CP-ASVLKCAEALQLP 227 (259)
T ss_dssp CCCTTTTCEEEEEESCTTTTHHHHHHHHHHTTCSEEEEEESSSSCCCSCGGGCSEEEECTT---CC-HHHHHHHHHHTCC
T ss_pred cCCCCCCeEEEEecCCCCCHHHHHHHHHHhcCCEEEeccccchhhhhccCCCCeEEEECCC---Ch-HHHHHHHHhcCCC
Confidence 357899999999998753 456788899999999886652 2445555431 12 3566788899999
Q ss_pred EechhHHHHHhhhcCCCCCcc
Q 037230 254 VVSEAWLIDSIEKQEAQPLEA 274 (815)
Q Consensus 254 IVsed~L~d~~~~~~~l~~~~ 274 (815)
||+.+||.+|+..+..+++..
T Consensus 228 iVs~EWv~~sI~~~~ll~~~~ 248 (259)
T 1kzy_C 228 VVSQEWVIQCLIVGERIGFKQ 248 (259)
T ss_dssp EECHHHHHHHHHHTSCCCTTS
T ss_pred EecHHHHHHHHHhCCcCCCCc
Confidence 999999999999999888654
No 58
>2dun_A POL MU, DNA polymerase MU; layers A/B/A, parallel beta-sheet of 4 strands, non- homologous END jonting, somatic hypermutation, V(D)J recombination; HET: DNA; NMR {Homo sapiens} PDB: 2htf_A*
Probab=97.18 E-value=0.00042 Score=65.09 Aligned_cols=92 Identities=17% Similarity=0.272 Sum_probs=67.8
Q ss_pred CCCCCCCCcEEEEeec-cccc-hHHHHHHHHHcCCEEEeecc-ceeEEEeChHHHhcCCch-----hHHHHH--HcCCcE
Q 037230 185 AAVKPFTGMTISLMGR-LSRT-HQYWRTTIEKHGGKVAASPI-GLTCLVASPAERERGGSS-----KLVEAM--ERGTRV 254 (815)
Q Consensus 185 p~~~~L~g~~~~isG~-l~~~-r~elk~~Ie~~GG~v~~~vs-~~thlI~t~~e~~k~~s~-----K~~~A~--~~gI~I 254 (815)
++..-|.|++|.|.+. +... |+-|.+++.+.|+.+....+ .|||+|+-+...+.. . ++.++. ..+..+
T Consensus 6 ~~~~~F~~v~iyive~kmG~sRr~fL~~la~~kGf~v~~~~S~~VTHVV~E~~s~~~~--~~~L~~~~~~l~~~~~~~~l 83 (133)
T 2dun_A 6 SGSTRFPGVAIYLVEPRMGRSRRAFLTGLARSKGFRVLDACSSEATHVVMEETSAEEA--VSWQERRMAAAPPGCTPPAL 83 (133)
T ss_dssp CSSCSEEEEEEEECHHHHCSHHHHHHHHHHHHHTEEECSSCCTTCCEEEESSCCHHHH--HHHHHHHHHHSCTTCCCCEE
T ss_pred CCccccCccEEEEecCCcCHHHHHHHHHHHHhcCCEeccccCCCceEEEecCCCHHHH--HHHHHHhhcccCcCCCCcEE
Confidence 3456699999999886 4433 67799999999999999999 999999954322110 1 222221 145889
Q ss_pred echhHHHHHhhhcCCCCC-cccccc
Q 037230 255 VSEAWLIDSIEKQEAQPL-EAYDLV 278 (815)
Q Consensus 255 Vsed~L~d~~~~~~~l~~-~~Y~i~ 278 (815)
|+..||.+|+..++++++ ..|.+.
T Consensus 84 LdisWltecm~~g~pV~~e~~~~l~ 108 (133)
T 2dun_A 84 LDISWLTESLGAGQPVPVECRHRLE 108 (133)
T ss_dssp EEHHHHHHHHHHTSCCCCCTTTSCC
T ss_pred eccHHHHHHHhcCCcCCcccceEee
Confidence 999999999999999997 445554
No 59
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*
Probab=96.84 E-value=0.0016 Score=67.59 Aligned_cols=91 Identities=15% Similarity=0.223 Sum_probs=67.7
Q ss_pred CCCCCCcEEEEeeccccchHHHHHHHHHcCCEEEeecc-----ceeEEEeChHHHhc-CCchhHHHHHHcCCcEechhHH
Q 037230 187 VKPFTGMTISLMGRLSRTHQYWRTTIEKHGGKVAASPI-----GLTCLVASPAERER-GGSSKLVEAMERGTRVVSEAWL 260 (815)
Q Consensus 187 ~~~L~g~~~~isG~l~~~r~elk~~Ie~~GG~v~~~vs-----~~thlI~t~~e~~k-~~s~K~~~A~~~gI~IVsed~L 260 (815)
.++|.|+.|++.+.. ...+.++.+|+..||+|..... ..||+++....... ....+++.+.+.||+||+.+||
T Consensus 133 ~~lF~g~~v~l~~~~-~~~~~l~~ii~agGg~vl~~~~~~~~~~~t~~~vd~~~~~~~~~~~~~~~~~~~~i~~v~~ewl 211 (235)
T 3al2_A 133 EGAFSGWKVILHVDQ-SREAGFKRLLQSGGAKVLPGHSVPLFKEATHLFSDLNKLKPDDSGVNIAEAAAQNVYCLRTEYI 211 (235)
T ss_dssp SSTTTTCEEEEECCH-HHHHHHHHHHHHTTCEECSSCCGGGGGGCSEEEECC--------CCCHHHHHHTTCEEEETHHH
T ss_pred CCCCCCcEEEEecCC-CcHHHHHHHHHcCCcEEecCCCCCccccCceEEEecccCCccchhHHHHHHHHcCCcEEcHHHH
Confidence 478999999999863 3457899999999999986532 35676665322211 0024677888899999999999
Q ss_pred HHHhhhcCCCCCcccccc
Q 037230 261 IDSIEKQEAQPLEAYDLV 278 (815)
Q Consensus 261 ~d~~~~~~~l~~~~Y~i~ 278 (815)
.+++-.....+.+.|.|.
T Consensus 212 ld~i~~~~~~~~~~y~l~ 229 (235)
T 3al2_A 212 ADYLMQESPPHVENYCLP 229 (235)
T ss_dssp HHHHHCSSCCCHHHHBCG
T ss_pred HHHHhcCCCCChhheEcc
Confidence 999999888888888775
No 60
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.76 E-value=0.0015 Score=71.95 Aligned_cols=57 Identities=16% Similarity=0.270 Sum_probs=50.2
Q ss_pred CCCcccEEEEEEEEcCCCCeEEEEEeeccCCCCcccccccCCCCHHHHHHHHHHHHHHHhcCCC
Q 037230 346 GRGMNLYCIVQLITVPDSNLHLYYKKGKVGDDPNAEERLEEWTGVDNAIKEFVRLFEEVTGNEF 409 (815)
Q Consensus 346 ~~~~NkfY~lQlle~~~~~y~vf~~wGRVG~~~~g~~k~~~~~s~e~Ai~~F~k~F~eKTgn~w 409 (815)
..|.++||.|.+-. ..|-++|||||+. |+.+...|.+.++|.++|.++..+|+...+
T Consensus 9 ~~~~~kf~~~~~~~-----~~~~~~~GriG~~--g~~~~~~f~~~~~a~~~~~~l~~~k~~kGy 65 (362)
T 2ra8_A 9 DFKSQKFWSIDVRG-----TDVIVNYGKLGTD--GQTQVKNFSSAGEAEKAAGKLIAEKTKKGY 65 (362)
T ss_dssp SSSCEEEEEEEEET-----TEEEEEEEETTSC--CEEEEEECSSHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCcCceEEEEEec-----cEEEEEECCCCCC--ceEEeeeCCCHHHHHHHHHHHHHHHHhcCC
Confidence 35789999999862 4778899999998 689999999999999999999999999865
No 61
>2l42_A DNA-binding protein RAP1; BRCT domain, protein binding; NMR {Saccharomyces cerevisiae}
Probab=96.67 E-value=0.00096 Score=59.03 Aligned_cols=79 Identities=16% Similarity=0.223 Sum_probs=62.9
Q ss_pred CCCCCCcEEEEeeccc-----cchHHHHHHHHHcCCEEEeecc-ce--eEEEeChHHHhcCCchhHHHHHHcCCcEechh
Q 037230 187 VKPFTGMTISLMGRLS-----RTHQYWRTTIEKHGGKVAASPI-GL--TCLVASPAERERGGSSKLVEAMERGTRVVSEA 258 (815)
Q Consensus 187 ~~~L~g~~~~isG~l~-----~~r~elk~~Ie~~GG~v~~~vs-~~--thlI~t~~e~~k~~s~K~~~A~~~gI~IVsed 258 (815)
..+|.||.|++.-..+ ...++|+++|.++||.|...+- +. .+.|++.- + .-++|.|+..
T Consensus 9 ~~vF~g~~Fyin~d~~a~ds~~d~d~L~~lI~~nGG~Vl~~lP~~s~~~~yVVSpy---N----------~t~LpTVtpT 75 (106)
T 2l42_A 9 GPPLSNMKFYLNRDADAHDSLNDIDQLARLIRANGGEVLDSKPRESKENVFIVSPY---N----------HTNLPTVTPT 75 (106)
T ss_dssp SCSSCCCCBEECCSSSCSSCSSTHHHHHHHHHTTTSCCCEECCCCCSSCCCCBCTT---C----------CCSSSBCCTT
T ss_pred CccccCcEEEEcCCCccchhhhHHHHHHHHHHhcCcEEhhhCcccccCCeEEEeCC---C----------CCCCccccHH
Confidence 4569999999964322 3469999999999999999887 44 34555541 1 2379999999
Q ss_pred HHHHHhhhcCCCCCcccccc
Q 037230 259 WLIDSIEKQEAQPLEAYDLV 278 (815)
Q Consensus 259 ~L~d~~~~~~~l~~~~Y~i~ 278 (815)
|+.+|+..+..++...|++-
T Consensus 76 YI~aC~~~nTLLnv~~YLvp 95 (106)
T 2l42_A 76 YIKACCQSNSLLNMENYLVP 95 (106)
T ss_dssp HHHHHHHSTTSCGGGGCCBC
T ss_pred HHHHHHhcCceecccccccC
Confidence 99999999999999999985
No 62
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A*
Probab=95.72 E-value=0.023 Score=58.16 Aligned_cols=81 Identities=14% Similarity=0.258 Sum_probs=59.9
Q ss_pred CCCCCCcEEEEeecc--ccchHHHHHHHHHcCCEEEeecc-----------ceeEEEeChHHHhcCCchhHHH-HH-HcC
Q 037230 187 VKPFTGMTISLMGRL--SRTHQYWRTTIEKHGGKVAASPI-----------GLTCLVASPAERERGGSSKLVE-AM-ERG 251 (815)
Q Consensus 187 ~~~L~g~~~~isG~l--~~~r~elk~~Ie~~GG~v~~~vs-----------~~thlI~t~~e~~k~~s~K~~~-A~-~~g 251 (815)
.+.|.|+.|++++.+ ..++++|+.+|+..||++...-+ +-.+||+++++..-- .++++ +. ..+
T Consensus 111 ~~LF~G~~f~it~~~~~~p~~~~l~~iI~~~GG~v~~~p~~~~~~~~~~~~~~~~vis~~~d~~~~--~~f~~~~~~~~~ 188 (220)
T 3l41_A 111 PSLLEDYVVYLTSKTVAPENVPAVISIVKSNGGVCSTLNVYNKRLARHLEDGNVVLITCNEDSHIW--TNFLDNASQNKT 188 (220)
T ss_dssp SCTTTTSEEEEETTSSCGGGHHHHHHHHHHTTCEEEEECSCCHHHHHHHHHCCEEEEECGGGHHHH--TTTHHHHTTCTT
T ss_pred chhhhheeEEEeccccCCCCCceEEEEEecCCcEechhhHHHHHHHHhcccCCEEEEEeCCcchHH--HHhhccccccce
Confidence 578999999999988 67799999999999999998111 125888997655321 22322 21 245
Q ss_pred CcEechhHHHHHhhhcCC
Q 037230 252 TRVVSEAWLIDSIEKQEA 269 (815)
Q Consensus 252 I~IVsed~L~d~~~~~~~ 269 (815)
++||+.|||.+++-+++.
T Consensus 189 ~~i~~~e~ll~~il~q~l 206 (220)
T 3l41_A 189 IFLQNYDWLIKTVLRQEI 206 (220)
T ss_dssp EEEEEHHHHHHHHHHTCC
T ss_pred EEEechhHHHHHHHHHHc
Confidence 669999999999877653
No 63
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*
Probab=95.43 E-value=0.012 Score=61.13 Aligned_cols=76 Identities=14% Similarity=0.119 Sum_probs=54.1
Q ss_pred CCCCCCcEEEEeecccc-------------chHHHHHHHHHcCCEE--Eeecc-ceeEEEeChHHHhcCCchhHHHHHHc
Q 037230 187 VKPFTGMTISLMGRLSR-------------THQYWRTTIEKHGGKV--AASPI-GLTCLVASPAERERGGSSKLVEAMER 250 (815)
Q Consensus 187 ~~~L~g~~~~isG~l~~-------------~r~elk~~Ie~~GG~v--~~~vs-~~thlI~t~~e~~k~~s~K~~~A~~~ 250 (815)
..+|.|.+|.+++.-.. ..+.+..+++.+||++ ...++ ...++|..... . .|.++
T Consensus 149 ~~Lf~g~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~Ga~~~~v~~~~~~~~d~v~~~~~---~------~~~~~ 219 (241)
T 2vxb_A 149 KGPLFGKKILFIIPEAKSWQKKIENTEQGQKALAHVYHALALGADVEIRPNVAHLECDLILTMDG---N------IVDET 219 (241)
T ss_dssp CCTTTTCEEEECCCC------------CHHHHHHHHHHHHHTTCEEECCSCCSSCCCSEEECSSS---C------CCSSC
T ss_pred CcCCCCcEEEEEeCCCcccccccccccccchHHHHHHHHHHcCCceecccccccCCccEEEECCc---c------ccccC
Confidence 57899999998653221 1378999999999999 33333 33445555421 1 15578
Q ss_pred CCcEechhHHHHHhhhcCCCC
Q 037230 251 GTRVVSEAWLIDSIEKQEAQP 271 (815)
Q Consensus 251 gI~IVsed~L~d~~~~~~~l~ 271 (815)
++|||+.+||.+|+..++.++
T Consensus 220 ~~~iV~~eWv~~~i~~g~~l~ 240 (241)
T 2vxb_A 220 NCPVVDPEWIVECLISQSDIS 240 (241)
T ss_dssp SSCEECHHHHHHHHHHTSCTT
T ss_pred CCCEecHHHHHHHHHhceecC
Confidence 999999999999999988774
No 64
>4gns_A Chitin biosynthesis protein CHS5; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.90 E-value=0.21 Score=48.41 Aligned_cols=89 Identities=16% Similarity=0.275 Sum_probs=67.4
Q ss_pred CCCCcEEEEeeccc----cchHHHHHHHHHcCCEEE-eecc-ceeEEEeChHHHhcCCchhHHHHHHcCCcEechhHHHH
Q 037230 189 PFTGMTISLMGRLS----RTHQYWRTTIEKHGGKVA-ASPI-GLTCLVASPAERERGGSSKLVEAMERGTRVVSEAWLID 262 (815)
Q Consensus 189 ~L~g~~~~isG~l~----~~r~elk~~Ie~~GG~v~-~~vs-~~thlI~t~~e~~k~~s~K~~~A~~~gI~IVsed~L~d 262 (815)
-..|+++|+ |.+. .+.-+|.+.+...|++-. ..|. ++||+||..-+-+.. ...+-.|+..+||||.++|+..
T Consensus 161 dmsgitvcl-gpldplkeisdlqisqclshigarplqrhvaidtthfvcndldnees-neelirakhnnipivrpewvra 238 (290)
T 4gns_A 161 DMSGITVCL-GPLDPLKEISDLQISQCLSHIGARPLQRHVAIDTTHFVCNDLDNEES-NEELIRAKHNNIPIVRPEWVRA 238 (290)
T ss_dssp CCTTCCEEE-CCCCGGGTCCHHHHHHHHHHTTCCCCBSSCCTTCCEEECSCCTTCTT-CHHHHHHHHTTCCEECTHHHHH
T ss_pred cccCceEEe-cCCChhhhhhhccHHHHHHHhCCchhhheeeeecceeeecCCCcccc-hHHHHhhhccCCCccCHHHHHH
Confidence 467888887 5543 355678888888898764 4577 999999997655443 4678889889999999999999
Q ss_pred HhhhcCCCCCccccccc
Q 037230 263 SIEKQEAQPLEAYDLVT 279 (815)
Q Consensus 263 ~~~~~~~l~~~~Y~i~s 279 (815)
|.-.++.+....|.+..
T Consensus 239 cevekrivgvrgfylda 255 (290)
T 4gns_A 239 CEVEKRIVGVRGFYLDA 255 (290)
T ss_dssp HHHTTSCCCSGGGBTTS
T ss_pred HhhhheeeeeeeEEEcc
Confidence 98777666666666553
No 65
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
Probab=91.97 E-value=0.13 Score=55.08 Aligned_cols=59 Identities=12% Similarity=0.108 Sum_probs=46.3
Q ss_pred hHHHHHHHHHcCCEEEeec-c-ceeEEEeChHHHhcCCchhHHHHHHcCCcEechhHHHHHhh
Q 037230 205 HQYWRTTIEKHGGKVAASP-I-GLTCLVASPAERERGGSSKLVEAMERGTRVVSEAWLIDSIE 265 (815)
Q Consensus 205 r~elk~~Ie~~GG~v~~~v-s-~~thlI~t~~e~~k~~s~K~~~A~~~gI~IVsed~L~d~~~ 265 (815)
+.++++.++.+||+++ .- + .|||||.......+- +-|.-.|.-.|+|||..+||.++..
T Consensus 126 ~~~L~~~L~~LGik~v-~~~~detTHlVm~krnT~Kv-TvK~L~ALI~gkPIV~~~Fl~al~~ 186 (325)
T 3huf_A 126 LSQWASNLNLLGIPTG-LRDSDATTHFVMNRQAGSSI-TVGTMYAFLKKTVIIDDSYLQYLST 186 (325)
T ss_dssp HHHHHHHHHTTTCCEE-SSCCTTCCEEECCCCCSSCC-CHHHHHHHHTTCEEECHHHHHHHTT
T ss_pred HHHHHHHHHHcCCEEE-EccCCCEEEEEEeccccccc-hHHHHHHHHCCCcEecHHHHHHHHH
Confidence 5679999999999999 65 5 799999975311111 2348899999999999999999753
No 66
>3t7k_A RTT107, regulator of TY1 transposition protein 107; BRCT, DNA repair, phospho-peptide, protein binding; HET: SEP; 2.03A {Saccharomyces cerevisiae} PDB: 3t7j_A* 3t7i_A
Probab=81.18 E-value=3.3 Score=42.85 Aligned_cols=84 Identities=13% Similarity=0.204 Sum_probs=63.1
Q ss_pred CCcEEEEeecc-ccchHHHHHHHHHcCCEEEeecc---ceeEEEeChHHHhcCCchhHHHHHHcCC--cEechhHHHHHh
Q 037230 191 TGMTISLMGRL-SRTHQYWRTTIEKHGGKVAASPI---GLTCLVASPAERERGGSSKLVEAMERGT--RVVSEAWLIDSI 264 (815)
Q Consensus 191 ~g~~~~isG~l-~~~r~elk~~Ie~~GG~v~~~vs---~~thlI~t~~e~~k~~s~K~~~A~~~gI--~IVsed~L~d~~ 264 (815)
..|+.++||-. ..-.+.=++....+|=++...++ +|+|||+-.. .-+.|+-.|...+= .||+++||.+|+
T Consensus 21 ~~i~ai~TGc~~~~~~~~D~~~Lr~LGI~Iv~d~~~~~~~n~LiAPki----lRT~KFL~sLa~~P~~~il~p~FI~~~L 96 (256)
T 3t7k_A 21 YDLKAVCTGCFHDGFNEVDIEILNQLGIKIFDNIKETDKLNCIFAPKI----LRTEKFLKSLSFEPLKFALKPEFIIDLL 96 (256)
T ss_dssp CCEEEEESSSCSSCCCHHHHHHHHHTTEEECSSCCGGGCCCEEECSSC----CCBHHHHHHTTSTTCCEEECTHHHHHHH
T ss_pred eeEEEEecCCcccccCHHHHHHHHHcCeEEEecCcccCCCCEEEcCch----hhHHHHHHHhccCccceEeCHHHHHHHH
Confidence 68999999988 32122234567789999998884 7999999873 23788888888764 499999999999
Q ss_pred hh---cC------CCCCcccccc
Q 037230 265 EK---QE------AQPLEAYDLV 278 (815)
Q Consensus 265 ~~---~~------~l~~~~Y~i~ 278 (815)
+. ++ .++..+|.|.
T Consensus 97 k~ih~~~~~~~~~~l~~~dY~L~ 119 (256)
T 3t7k_A 97 KQIHSKKDKLSQININLFDYEIN 119 (256)
T ss_dssp HHHC-------CCCCCSSTTBCT
T ss_pred HHhhcCCcccccccCChhhccCC
Confidence 87 55 5667888875
No 67
>3oq4_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.40A {Saccharomyces cerevisiae}
Probab=78.14 E-value=3.2 Score=38.90 Aligned_cols=63 Identities=10% Similarity=0.024 Sum_probs=49.7
Q ss_pred chHHHHHHHHHcCCEEEeecc-ceeEEEeChHHHhc---CCchhHHHHHHcCCcEechhHHHHHhhh
Q 037230 204 THQYWRTTIEKHGGKVAASPI-GLTCLVASPAERER---GGSSKLVEAMERGTRVVSEAWLIDSIEK 266 (815)
Q Consensus 204 ~r~elk~~Ie~~GG~v~~~vs-~~thlI~t~~e~~k---~~s~K~~~A~~~gI~IVsed~L~d~~~~ 266 (815)
.++-+|+-|..+||+|..=.+ .|||+|+...--.. +.+.=+.+|+++|++|=+.+-|...+..
T Consensus 31 ~~~llk~~f~~LGa~I~~FFd~~VTiiITrR~~~~~~~~p~~DIL~rAr~~~mKIWs~EKl~RfL~~ 97 (134)
T 3oq4_A 31 RRDLLKRGFLTLGAQITQFFDTTVTIVITRRSVENIYLLKDTDILSRAKKNYMKVWSYEKAARFLKN 97 (134)
T ss_dssp HHHHHHHHHHHTTCEEESSCCTTCCEEEESSCGGGGGGSCTTSHHHHHHHTTCEEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCEEeeecCCceEEEEeCCcCcccccCCcchHHHHHHHcCCeeeeHHHHHHHHHh
Confidence 456789999999999999999 99999998753211 1112368999999999999999887764
No 68
>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae}
Probab=77.79 E-value=4.7 Score=36.75 Aligned_cols=49 Identities=18% Similarity=0.213 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhhhc
Q 037230 59 DVTAEFEEFCKSIEGQLSAEQMREILELNGQDSSGSDVAVVTKCLDMLFY 108 (815)
Q Consensus 59 ~q~~~lw~~~d~l~~~~~~~~l~~lL~~N~q~~~~~~~~ll~~~aD~~~f 108 (815)
-|..++-.+...|+ .|+.++|++++..+|..+.|.+.+|++|+.+.+-=
T Consensus 25 ~~~~e~~~~~~~l~-kLtVaELK~~cr~~GL~~sGkKaeLi~RI~~yl~~ 73 (114)
T 2rnn_A 25 ELRNEVEETITLME-LLKVSELKDICRSVSFPVSGRKAVLQDLIRNFLQN 73 (114)
T ss_dssp HHHHHHHHHHHHHT-TCCHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHH-HhhHHHHHHHHHHcCCCcCCcHHHHHHHHHHHHHh
Confidence 36688889999997 59999999999999999999999999999986543
No 69
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=70.92 E-value=2.9 Score=32.16 Aligned_cols=22 Identities=27% Similarity=0.715 Sum_probs=17.6
Q ss_pred CCCCCCCCC-eeEEeC--ceeEeec
Q 037230 111 LDKCPVCNG-NLEFDG--KRYSCKG 132 (815)
Q Consensus 111 l~~Cp~C~g-~l~~~~--~~Y~C~G 132 (815)
...||.|++ .|+|+. +.++|..
T Consensus 5 ~~~CP~C~~~~l~~d~~~gelvC~~ 29 (50)
T 1pft_A 5 QKVCPACESAELIYDPERGEIVCAK 29 (50)
T ss_dssp CCSCTTTSCCCEEEETTTTEEEESS
T ss_pred cEeCcCCCCcceEEcCCCCeEECcc
Confidence 458999977 999995 6788853
No 70
>3oq0_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.70A {Saccharomyces cerevisiae}
Probab=70.66 E-value=8.2 Score=36.79 Aligned_cols=62 Identities=10% Similarity=0.026 Sum_probs=48.7
Q ss_pred hHHHHHHHHHcCCEEEeecc-ceeEEEeChHHHhc---CCchhHHHHHHcCCcEechhHHHHHhhh
Q 037230 205 HQYWRTTIEKHGGKVAASPI-GLTCLVASPAERER---GGSSKLVEAMERGTRVVSEAWLIDSIEK 266 (815)
Q Consensus 205 r~elk~~Ie~~GG~v~~~vs-~~thlI~t~~e~~k---~~s~K~~~A~~~gI~IVsed~L~d~~~~ 266 (815)
++-+|+.+..+||+|..=.+ .|||+|+...--.. +.+.=+.+|+++|++|=+.|-|...+..
T Consensus 49 ~~llkk~f~~LGa~I~~FFd~~VTiIITrR~~~~~~~yp~~DIL~rAr~~~mKIWs~EKl~RfL~~ 114 (151)
T 3oq0_A 49 RDLLKRGFLTLGAQITQFFDTTVTIVITRRSVENIYLLKDTDILSRAKKNYMKVWSYEKAARFLKN 114 (151)
T ss_dssp HHHHHHHHHHHTCEEESSCCTTCCEEEESSCGGGGGGSCTTSHHHHHHHTTCEEEEHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCEEeeecCCceEEEEeCCcCcccccCCcchHHHHHHHcCCeeecHHHHHHHHHh
Confidence 35578899999999999999 99999998743211 1123458999999999999999887764
No 71
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=66.63 E-value=7.7 Score=30.81 Aligned_cols=36 Identities=11% Similarity=0.168 Sum_probs=32.0
Q ss_pred cCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhhhcC
Q 037230 74 QLSAEQMREILELNGQDSSGSDVAVVTKCLDMLFYG 109 (815)
Q Consensus 74 ~~~~~~l~~lL~~N~q~~~~~~~~ll~~~aD~~~fG 109 (815)
.+++.+|+++|...+.++.|....|++|+...+-=.
T Consensus 12 klkV~eLK~~L~~rGL~~~G~KaeLieRL~~~l~~~ 47 (55)
T 2do1_A 12 KLKLAELKQECLARGLETKGIKQDLIHRLQAYLEEH 47 (55)
T ss_dssp TSCHHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHT
T ss_pred HCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcC
Confidence 589999999999999999999999999998766443
No 72
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=64.56 E-value=3.5 Score=38.24 Aligned_cols=34 Identities=29% Similarity=0.686 Sum_probs=25.7
Q ss_pred hhhcCCCCCCCCCCCeeEEe-CceeEeecCCcCcc
Q 037230 105 MLFYGPLDKCPVCNGNLEFD-GKRYSCKGMYSEWS 138 (815)
Q Consensus 105 ~~~fG~l~~Cp~C~g~l~~~-~~~Y~C~G~~sewt 138 (815)
|-+.-.+++||.|+....|. +..|.|.----||+
T Consensus 21 g~~M~~lP~CP~C~seytYeDg~l~vCPeC~hEW~ 55 (138)
T 2akl_A 21 GHMVSTLPPCPQCNSEYTYEDGALLVCPECAHEWS 55 (138)
T ss_dssp --CCCCSCCCTTTCCCCCEECSSSEEETTTTEEEC
T ss_pred ccccccCCCCCCCCCcceEecCCeEECCccccccC
Confidence 44556799999997765555 57899998888995
No 73
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=62.00 E-value=11 Score=29.46 Aligned_cols=32 Identities=16% Similarity=0.292 Sum_probs=29.3
Q ss_pred cCCHHHHHHHHHHhCCCCCCChHHHHHHhhhh
Q 037230 74 QLSAEQMREILELNGQDSSGSDVAVVTKCLDM 105 (815)
Q Consensus 74 ~~~~~~l~~lL~~N~q~~~~~~~~ll~~~aD~ 105 (815)
.++..+|+++|...|-.+.|....|++|+...
T Consensus 7 kltV~eLK~~Lk~RGL~~~G~KadLieRL~~~ 38 (51)
T 1h1j_S 7 SLTVVQLKDLLTKRNLSVGGLKNELVQRLIKD 38 (51)
T ss_dssp GCCHHHHHHHHHHTTCCCCSSHHHHHHHHHHH
T ss_pred HCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHH
Confidence 58999999999999999999999999998654
No 74
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=61.11 E-value=12 Score=29.02 Aligned_cols=33 Identities=24% Similarity=0.415 Sum_probs=30.1
Q ss_pred cCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhh
Q 037230 74 QLSAEQMREILELNGQDSSGSDVAVVTKCLDML 106 (815)
Q Consensus 74 ~~~~~~l~~lL~~N~q~~~~~~~~ll~~~aD~~ 106 (815)
.+++.+|++.|..-+-++.|....|++|+...+
T Consensus 12 klkV~eLK~eLk~RgL~~~G~Ka~Li~RL~~~~ 44 (50)
T 1zrj_A 12 RLKVNELREELQRRGLDTRGLKAELAERLQAAL 44 (50)
T ss_dssp GSCHHHHHHHHHHTTCCCCSCHHHHHHHHHHHH
T ss_pred HCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHH
Confidence 589999999999999999999999999997654
No 75
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=56.37 E-value=14 Score=31.18 Aligned_cols=34 Identities=12% Similarity=0.244 Sum_probs=30.9
Q ss_pred cCCHHHHHHHHHHhCCCCCCChHHHHHHhhhhhh
Q 037230 74 QLSAEQMREILELNGQDSSGSDVAVVTKCLDMLF 107 (815)
Q Consensus 74 ~~~~~~l~~lL~~N~q~~~~~~~~ll~~~aD~~~ 107 (815)
.+++.+|++.|...|-++.|.+..|++|+...+-
T Consensus 28 klkVaeLK~eLk~RGL~~sG~KaeLIeRL~~~~~ 61 (75)
T 2kvu_A 28 DMKVAELKQELKLRSLPVSGTKTELIERLRAYQD 61 (75)
T ss_dssp TSCHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHH
T ss_pred HCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 4899999999999999999999999999987654
No 76
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=49.53 E-value=11 Score=29.84 Aligned_cols=22 Identities=32% Similarity=0.754 Sum_probs=19.1
Q ss_pred CCCCCCCCCeeEEeCceeEeec
Q 037230 111 LDKCPVCNGNLEFDGKRYSCKG 132 (815)
Q Consensus 111 l~~Cp~C~g~l~~~~~~Y~C~G 132 (815)
+..||.|+|.|.|+.+.-.|.+
T Consensus 10 iL~CP~c~~~L~~~~~~L~C~~ 31 (56)
T 2kpi_A 10 ILACPACHAPLEERDAELICTG 31 (56)
T ss_dssp SCCCSSSCSCEEEETTEEEECS
T ss_pred heeCCCCCCcceecCCEEEcCC
Confidence 4689999999999988888885
No 77
>1wfx_A Probable RNA 2'-phosphotransferase; tRNA splicing, NAD, structural GE riken structural genomics/proteomics initiative, RSGI; 2.80A {Aeropyrum pernix} SCOP: d.166.1.5
Probab=46.75 E-value=6.4 Score=39.03 Aligned_cols=36 Identities=14% Similarity=0.295 Sum_probs=27.2
Q ss_pred eeeeccCCccchhhhcccCCCCCCCCCCCCCceeeeeeeechhhhh
Q 037230 652 VLLWCGTRSSNLLRHLQKGFLPASCSLPVPGYMFGRAIVCSDAAAE 697 (815)
Q Consensus 652 ~lLwHGSr~~N~~gIL~~Gl~iap~~a~~tG~mFGkGIYFAd~~sk 697 (815)
..|+|||...+|.+|+.+||+... -.-|.||.....
T Consensus 92 ~~lyHGT~~~~~~~I~~~GL~~m~----------R~hVHLs~~~~~ 127 (186)
T 1wfx_A 92 PILYHGTTEEALPLIMERGIMRGR----------RLKVHLTSSLED 127 (186)
T ss_dssp SEEEECCBGGGHHHHHHHCBCCCS----------SSSEEEESCHHH
T ss_pred CEEEEeCCHHHHHHHHHhCCCCCC----------CCEEEEecCCCC
Confidence 489999999999999999986431 123777765443
No 78
>3qbz_A DDK kinase regulatory subunit DBF4; FHA domain,RAD53, replication checkpoint, cell cycle; 2.69A {Saccharomyces cerevisiae}
Probab=46.54 E-value=21 Score=34.30 Aligned_cols=77 Identities=9% Similarity=-0.042 Sum_probs=52.9
Q ss_pred CCC-CcEEEEeecccc--c---h-------HHHHHHHHHcCCEEEeecc-ceeEEEeChHHHhcC---CchhHHHHHHcC
Q 037230 189 PFT-GMTISLMGRLSR--T---H-------QYWRTTIEKHGGKVAASPI-GLTCLVASPAERERG---GSSKLVEAMERG 251 (815)
Q Consensus 189 ~L~-g~~~~isG~l~~--~---r-------~elk~~Ie~~GG~v~~~vs-~~thlI~t~~e~~k~---~s~K~~~A~~~g 251 (815)
.|. +.+|-+-+.... + + .-+++.+..+|+++..-.+ +|||||++..--... .+.=+..|.+++
T Consensus 58 ifk~~~vfYFDt~~~~~~~~~~k~kl~K~~~llkr~f~~LGA~I~~FFd~~VTiVIT~R~i~~~~~~~~~Dil~~A~~~~ 137 (160)
T 3qbz_A 58 IMKRDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITRRSVENIYLLKDTDILSRAKKNY 137 (160)
T ss_dssp HHHHHCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHTTTCEEESSCCTTCCEEEESSCSSCGGGSCTTSHHHHHHHTT
T ss_pred hCccCcEEEecCCChhhhhHHHHHHHHHHHHHHHHHHHHcCCEeeeeccCCeEEEEecCcCcccccCCchhHHHHHHHcC
Confidence 355 577777665431 1 1 2255678899999999999 999999987422110 012378899999
Q ss_pred CcEechhHHHHHhh
Q 037230 252 TRVVSEAWLIDSIE 265 (815)
Q Consensus 252 I~IVsed~L~d~~~ 265 (815)
++|=+-+-+...+.
T Consensus 138 mKVW~yeK~~RFLk 151 (160)
T 3qbz_A 138 MKVWSYEKAARFLK 151 (160)
T ss_dssp CEEEEHHHHHHHHH
T ss_pred ceecchHHHHHHHH
Confidence 99999887766553
No 79
>1jjr_A KU70, thyroid autoantigen; DNA repair protein, protein-DNA interaction, solution structure, DNA binding protein; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=38.89 E-value=24 Score=33.78 Aligned_cols=46 Identities=7% Similarity=0.044 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHhCCCCCCChHHHHHHhhhh
Q 037230 58 GDVTAEFEEFCKSIEGQLSAEQMREILELNGQDSSGSDVAVVTKCLDM 105 (815)
Q Consensus 58 k~q~~~lw~~~d~l~~~~~~~~l~~lL~~N~q~~~~~~~~ll~~~aD~ 105 (815)
.++...+|+ ...|. .|++.+|+++|...|..+.|-...|++|+...
T Consensus 49 ~~~i~~l~~-~g~L~-kltV~eLK~~l~~~gL~~~GkKadLI~Ri~~~ 94 (151)
T 1jjr_A 49 EEELKTHIS-KGTLG-KFTVPMLKEACRAYGLKSGLKKQELLEALTKH 94 (151)
T ss_dssp SHHHHHHHH-HTCTT-SSCHHHHHHHHHHHTCCCCSSSHHHHHHHHHT
T ss_pred HHHHHHHHH-cCcHH-hccHHHHHHHHHHcCCCCcccHHHHHHHHHHH
Confidence 456666774 45564 59999999999999988889999999999855
No 80
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=37.06 E-value=20 Score=29.73 Aligned_cols=22 Identities=32% Similarity=0.839 Sum_probs=17.5
Q ss_pred CCCCCCCCCeeEEeC--ceeEeec
Q 037230 111 LDKCPVCNGNLEFDG--KRYSCKG 132 (815)
Q Consensus 111 l~~Cp~C~g~l~~~~--~~Y~C~G 132 (815)
+..||.|+|.|.|+. +.-+|..
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~ 31 (69)
T 2pk7_A 8 ILACPICKGPLKLSADKTELISKG 31 (69)
T ss_dssp TCCCTTTCCCCEECTTSSEEEETT
T ss_pred heeCCCCCCcCeEeCCCCEEEcCC
Confidence 468999999999986 5567764
No 81
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=35.73 E-value=23 Score=29.42 Aligned_cols=22 Identities=41% Similarity=0.985 Sum_probs=17.5
Q ss_pred CCCCCCCCCeeEEeC--ceeEeec
Q 037230 111 LDKCPVCNGNLEFDG--KRYSCKG 132 (815)
Q Consensus 111 l~~Cp~C~g~l~~~~--~~Y~C~G 132 (815)
+..||.|+|.|.|+. +.-+|..
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~ 31 (70)
T 2js4_A 8 ILVCPVCKGRLEFQRAQAELVCNA 31 (70)
T ss_dssp CCBCTTTCCBEEEETTTTEEEETT
T ss_pred heECCCCCCcCEEeCCCCEEEcCC
Confidence 568999999999995 4667764
No 82
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=34.57 E-value=18 Score=28.87 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=17.0
Q ss_pred CCCCCCCCCC-eeEEeC--ceeEee
Q 037230 110 PLDKCPVCNG-NLEFDG--KRYSCK 131 (815)
Q Consensus 110 ~l~~Cp~C~g-~l~~~~--~~Y~C~ 131 (815)
....||.|++ +|+|+. +.++|.
T Consensus 10 ~~~~Cp~C~~~~lv~D~~~ge~vC~ 34 (58)
T 1dl6_A 10 PRVTCPNHPDAILVEDYRAGDMICP 34 (58)
T ss_dssp SCCSBTTBSSSCCEECSSSCCEECT
T ss_pred ccccCcCCCCCceeEeCCCCeEEeC
Confidence 3457999955 899985 678886
No 83
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima} PDB: 2gaj_A*
Probab=34.03 E-value=5.4 Score=46.86 Aligned_cols=34 Identities=12% Similarity=-0.027 Sum_probs=19.8
Q ss_pred cCCCCCCCCCC-CeeEEeC---c--eeEeecCCcCccccccccC
Q 037230 108 YGPLDKCPVCN-GNLEFDG---K--RYSCKGMYSEWSTCTFRTK 145 (815)
Q Consensus 108 fG~l~~Cp~C~-g~l~~~~---~--~Y~C~G~~sewtkC~~~~~ 145 (815)
.|..++||.|+ |.|+-.. + .|.|.+| ..|.|+.-
T Consensus 569 ~g~~G~CP~Cg~g~l~~r~~k~G~~f~gCs~y----p~C~f~~~ 608 (633)
T 2gai_A 569 FGKYGFYLKCECGKTRSVKNDEIAVIDDGKIF----LGRKDSES 608 (633)
T ss_dssp EETTEEEEECSSSCCEECCTTSBCEEETTEEE----C-------
T ss_pred ccccccCcccCCCcceeecccCCCeEEeCCCC----cCCCCeec
Confidence 45667899997 8877753 2 5889876 45998753
No 84
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=33.09 E-value=24 Score=29.11 Aligned_cols=22 Identities=27% Similarity=0.596 Sum_probs=17.4
Q ss_pred CCCCCCCCCeeEEeC--ceeEeec
Q 037230 111 LDKCPVCNGNLEFDG--KRYSCKG 132 (815)
Q Consensus 111 l~~Cp~C~g~l~~~~--~~Y~C~G 132 (815)
+..||.|+|.|.|+. +.-+|..
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~ 31 (68)
T 2jr6_A 8 ILVCPVTKGRLEYHQDKQELWSRQ 31 (68)
T ss_dssp CCBCSSSCCBCEEETTTTEEEETT
T ss_pred heECCCCCCcCeEeCCCCEEEcCC
Confidence 568999999999995 5566754
No 85
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=32.42 E-value=26 Score=28.85 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=17.6
Q ss_pred CCCCCCCCCeeEEeC--ceeEeec
Q 037230 111 LDKCPVCNGNLEFDG--KRYSCKG 132 (815)
Q Consensus 111 l~~Cp~C~g~l~~~~--~~Y~C~G 132 (815)
+..||.|+|.|.|+. +.-+|..
T Consensus 10 iL~CP~ck~~L~~~~~~g~LvC~~ 33 (67)
T 2jny_A 10 VLACPKDKGPLRYLESEQLLVNER 33 (67)
T ss_dssp CCBCTTTCCBCEEETTTTEEEETT
T ss_pred HhCCCCCCCcCeEeCCCCEEEcCC
Confidence 568999999999995 5677764
No 86
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=31.79 E-value=25 Score=29.01 Aligned_cols=22 Identities=45% Similarity=1.046 Sum_probs=17.2
Q ss_pred CCCCCCCCCeeEEeC--ceeEeec
Q 037230 111 LDKCPVCNGNLEFDG--KRYSCKG 132 (815)
Q Consensus 111 l~~Cp~C~g~l~~~~--~~Y~C~G 132 (815)
+..||.|+|.|.|+. +.-+|..
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~ 31 (68)
T 2hf1_A 8 ILVCPLCKGPLVFDKSKDELICKG 31 (68)
T ss_dssp ECBCTTTCCBCEEETTTTEEEETT
T ss_pred heECCCCCCcCeEeCCCCEEEcCC
Confidence 357999999999985 5666764
No 87
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=29.91 E-value=51 Score=29.18 Aligned_cols=12 Identities=50% Similarity=1.093 Sum_probs=9.0
Q ss_pred CCCCCCCCCeeE
Q 037230 111 LDKCPVCNGNLE 122 (815)
Q Consensus 111 l~~Cp~C~g~l~ 122 (815)
.++||.|+..+.
T Consensus 47 g~~CPvCgs~l~ 58 (112)
T 1l8d_A 47 KGKCPVCGRELT 58 (112)
T ss_dssp SEECTTTCCEEC
T ss_pred CCCCCCCCCcCC
Confidence 567999987653
No 88
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=29.54 E-value=27 Score=27.03 Aligned_cols=21 Identities=38% Similarity=0.911 Sum_probs=14.2
Q ss_pred CCCCCCCC-CeeEEe-CceeEee
Q 037230 111 LDKCPVCN-GNLEFD-GKRYSCK 131 (815)
Q Consensus 111 l~~Cp~C~-g~l~~~-~~~Y~C~ 131 (815)
..-||.|+ +-+..+ ...++|.
T Consensus 19 ~k~CP~CG~~~fm~~~~~R~~C~ 41 (50)
T 3j20_Y 19 NKFCPRCGPGVFMADHGDRWACG 41 (50)
T ss_dssp SEECSSSCSSCEEEECSSEEECS
T ss_pred cccCCCCCCceEEecCCCeEECC
Confidence 35699995 444444 4789996
No 89
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=29.46 E-value=14 Score=37.77 Aligned_cols=25 Identities=16% Similarity=0.291 Sum_probs=17.5
Q ss_pred hcCCCCCCCCCCC--eeE-EeCceeEee
Q 037230 107 FYGPLDKCPVCNG--NLE-FDGKRYSCK 131 (815)
Q Consensus 107 ~fG~l~~Cp~C~g--~l~-~~~~~Y~C~ 131 (815)
-|+.-.+||.|++ .+. |+.+.|+|.
T Consensus 10 ~~~~~~~CP~Cg~~d~~~~~~dg~~~C~ 37 (255)
T 1nui_A 10 VFLYHIPCDNCGSSDGNSLFSDGHTFCY 37 (255)
T ss_dssp CEEEEECCSSSCCSSCEEEETTSCEEET
T ss_pred ceecCCcCCCCCCCCCceEeCCCCeecc
Confidence 4777889999955 344 444568887
No 90
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=26.08 E-value=65 Score=27.48 Aligned_cols=31 Identities=23% Similarity=0.479 Sum_probs=25.6
Q ss_pred cCCCCHHHHHHHHHHHHHHHhcCCCcccccc
Q 037230 385 EEWTGVDNAIKEFVRLFEEVTGNEFEPWERE 415 (815)
Q Consensus 385 ~~~~s~e~Ai~~F~k~F~eKTgn~w~~w~~r 415 (815)
..+.++++|+..|.++..++-=+.+..|+.-
T Consensus 11 ~~~~t~eea~~~Fk~LL~e~~V~p~~tWe~~ 41 (82)
T 2dod_A 11 RAIVPLEARMKQFKDMLLERGVSAFSTWEKE 41 (82)
T ss_dssp SSSCCHHHHHHHHHHHHHHTTCCSSSCHHHH
T ss_pred cccCCHHHHHHHHHHHHHHcCcCCCCCHHHH
Confidence 3557899999999999999987766688763
No 91
>2raq_A Conserved protein MTH889; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.11A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.61.1
Probab=25.09 E-value=67 Score=28.28 Aligned_cols=42 Identities=19% Similarity=0.285 Sum_probs=31.8
Q ss_pred CCCCCcEEEEeeccccchHHHHHHHHHcCCEEEeeccceeEEEeChH
Q 037230 188 KPFTGMTISLMGRLSRTHQYWRTTIEKHGGKVAASPIGLTCLVASPA 234 (815)
Q Consensus 188 ~~L~g~~~~isG~l~~~r~elk~~Ie~~GG~v~~~vs~~thlI~t~~ 234 (815)
.--.|++|.+-|.- .+-+++++.|+++||.+++ ++-+++++.
T Consensus 46 ~eTe~lkitiEG~~-id~d~I~~~IE~~Gg~IHS----IDEVvaG~~ 87 (97)
T 2raq_A 46 KETENIKVTIQGND-LDFDEITRAIESYGGSIHS----VDEVVAGRT 87 (97)
T ss_dssp SSCEEEEEEEECSS-CCHHHHHHHHHHTTCEEEE----EEEEEEESS
T ss_pred ccccEEEEEEEecC-CCHHHHHHHHHHcCCeEEe----eeeeeecce
Confidence 34578999999972 3568999999999999983 455666653
No 92
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=24.93 E-value=27 Score=36.23 Aligned_cols=27 Identities=22% Similarity=0.490 Sum_probs=19.8
Q ss_pred hhcCCC-CCCCCCCCeeEE---eC-ceeEeec
Q 037230 106 LFYGPL-DKCPVCNGNLEF---DG-KRYSCKG 132 (815)
Q Consensus 106 ~~fG~l-~~Cp~C~g~l~~---~~-~~Y~C~G 132 (815)
.+||+- .|||.|+..+.. .+ ..|+|..
T Consensus 228 ~VygR~g~pC~~CG~~I~~~~~~gR~t~~CP~ 259 (262)
T 1k3x_A 228 KVFHRDGEPCERCGSIIEKTTLSSRPFYWCPG 259 (262)
T ss_dssp SSTTCTTSBCTTTCCBCEEEEETTEEEEECTT
T ss_pred EEcCCCcCCCCCCCCEeEEEEECCCCeEECCC
Confidence 478886 699999875444 34 6899963
No 93
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=24.72 E-value=59 Score=26.95 Aligned_cols=34 Identities=21% Similarity=0.436 Sum_probs=27.2
Q ss_pred ccccCCCCHHHHHHHHHHHHHHHhcCCCcccccc
Q 037230 382 ERLEEWTGVDNAIKEFVRLFEEVTGNEFEPWERE 415 (815)
Q Consensus 382 ~k~~~~~s~e~Ai~~F~k~F~eKTgn~w~~w~~r 415 (815)
.....|.|.++|.+.|.+++.++-=+....|+..
T Consensus 6 ~~~~~~~t~eea~~~F~~LL~e~~V~~~~tWe~~ 39 (71)
T 1uzc_A 6 KKTYTWNTKEEAKQAFKELLKEKRVPSNASWEQA 39 (71)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHHTTCCTTCCHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHcCcCCCCCHHHH
Confidence 3445678999999999999999976655578763
No 94
>2x3d_A SSO6206; unknown function; 2.70A {Sulfolobus solfataricus}
Probab=24.09 E-value=76 Score=27.87 Aligned_cols=41 Identities=17% Similarity=0.254 Sum_probs=30.7
Q ss_pred CCCCCcEEEEeeccccchHHHHHHHHHcCCEEEeeccceeEEEeCh
Q 037230 188 KPFTGMTISLMGRLSRTHQYWRTTIEKHGGKVAASPIGLTCLVASP 233 (815)
Q Consensus 188 ~~L~g~~~~isG~l~~~r~elk~~Ie~~GG~v~~~vs~~thlI~t~ 233 (815)
.--.|+++.+-|.- .+-+++++.|+++||.+++ ++-+++++
T Consensus 45 ~eTe~lkItIEG~~-idfd~I~~~IE~~Gg~IHS----IDEVvaG~ 85 (96)
T 2x3d_A 45 VETMGLMIIIEGTS-LNFDDIRKMLEEEGCAIHS----IDEVVSGN 85 (96)
T ss_dssp SSEEEEEEEEEESS-CCHHHHHHHHHHTTCEEEE----EEEEEEES
T ss_pred ccccEEEEEEEecC-CCHHHHHHHHHHcCCeEEe----eeeeeecc
Confidence 34568999999972 3568999999999999983 34455554
No 95
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=22.02 E-value=34 Score=35.58 Aligned_cols=28 Identities=21% Similarity=0.616 Sum_probs=20.3
Q ss_pred hhhcCC-CCCCCCCCCeeE---EeC-ceeEeec
Q 037230 105 MLFYGP-LDKCPVCNGNLE---FDG-KRYSCKG 132 (815)
Q Consensus 105 ~~~fG~-l~~Cp~C~g~l~---~~~-~~Y~C~G 132 (815)
..+||+ -.|||.|+..+. +.+ ..|+|..
T Consensus 233 ~~VygR~g~pC~~CG~~I~~~~~~gR~t~~CP~ 265 (268)
T 1k82_A 233 LQVYGRKGEPCRVCGTPIVATKHAQRATFYCRQ 265 (268)
T ss_dssp CSSTTCTTSBCTTTCCBCEEEEETTEEEEECTT
T ss_pred EEEcccCCCCCCCCCCEeeEEEECCCceEECCC
Confidence 358888 479999987544 444 6899963
No 96
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=21.80 E-value=28 Score=27.48 Aligned_cols=21 Identities=33% Similarity=0.679 Sum_probs=13.5
Q ss_pred CCCCCCCCCeeE--EeCceeEee
Q 037230 111 LDKCPVCNGNLE--FDGKRYSCK 131 (815)
Q Consensus 111 l~~Cp~C~g~l~--~~~~~Y~C~ 131 (815)
..-||.|+.-+. -..+.|+|.
T Consensus 18 ~~fCPkCG~~~~ma~~~dr~~C~ 40 (55)
T 2k4x_A 18 HRFCPRCGPGVFLAEHADRYSCG 40 (55)
T ss_dssp SCCCTTTTTTCCCEECSSEEECT
T ss_pred cccCcCCCCceeEeccCCEEECC
Confidence 467999954333 224689994
No 97
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=21.67 E-value=35 Score=35.54 Aligned_cols=28 Identities=25% Similarity=0.619 Sum_probs=20.3
Q ss_pred hhhcCC-CCCCCCCCCeeE---EeC-ceeEeec
Q 037230 105 MLFYGP-LDKCPVCNGNLE---FDG-KRYSCKG 132 (815)
Q Consensus 105 ~~~fG~-l~~Cp~C~g~l~---~~~-~~Y~C~G 132 (815)
..+||+ -.|||.|+..+. +.+ +.|+|..
T Consensus 235 ~~VygR~G~pC~~CG~~I~~~~~~gR~t~~CP~ 267 (271)
T 2xzf_A 235 LQVYGKTGEKCSRCGAEIQKIKVAGRGTHFCPV 267 (271)
T ss_dssp CSSTTCTTSBCTTTCCBCEEEEETTEEEEECTT
T ss_pred EEEccCCCCCCCCCCCEeeEEEECCCceEECCC
Confidence 368888 479999987544 444 6899964
No 98
>3bpd_A Uncharacterized protein; heptamer, Mg+2 ION, PSI-2, NYSGXRC, structural genom protein structure initiative; 2.80A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.61.1
Probab=20.59 E-value=81 Score=27.85 Aligned_cols=41 Identities=20% Similarity=0.333 Sum_probs=30.5
Q ss_pred CCCCCcEEEEeeccccchHHHHHHHHHcCCEEEeeccceeEEEeCh
Q 037230 188 KPFTGMTISLMGRLSRTHQYWRTTIEKHGGKVAASPIGLTCLVASP 233 (815)
Q Consensus 188 ~~L~g~~~~isG~l~~~r~elk~~Ie~~GG~v~~~vs~~thlI~t~ 233 (815)
.--.|++|.+-|.= .+-++|++.|+++||.+.+ ++=+++++
T Consensus 46 ~eTe~lkItIEG~d-Idfd~I~~~IE~~GgvIHS----IDEVvaG~ 86 (100)
T 3bpd_A 46 QATENIKITILGNN-LDYEQIKGVIEDMGGVIHS----VDEVVAGK 86 (100)
T ss_dssp SSEEEEEEEEEEEE-ECHHHHHHHHHTTTCEEEE----EEEEEEES
T ss_pred ccccEEEEEEEecC-CCHHHHHHHHHHcCCeEEe----eeeeeecc
Confidence 34578999999972 3468999999999999983 34445554
No 99
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=20.54 E-value=39 Score=35.18 Aligned_cols=28 Identities=29% Similarity=0.516 Sum_probs=20.6
Q ss_pred hhhcCC-CCCCCCCCCeeEEe---C-ceeEeec
Q 037230 105 MLFYGP-LDKCPVCNGNLEFD---G-KRYSCKG 132 (815)
Q Consensus 105 ~~~fG~-l~~Cp~C~g~l~~~---~-~~Y~C~G 132 (815)
..+||+ -.|||.|+..+.-. + ..|+|..
T Consensus 228 ~~VygR~g~pC~~CG~~I~~~~~~gR~t~~CP~ 260 (266)
T 1ee8_A 228 HAVYGREGLPCPACGRPVERRVVAGRGTHFCPT 260 (266)
T ss_dssp CSSTTCTTSBCTTTCCBCEEEESSSCEEEECTT
T ss_pred EEEcccCCCCCCCCCCEeeEEEECCCceEECCC
Confidence 468888 47999998765544 3 6899964
No 100
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=20.10 E-value=1.6e+02 Score=30.62 Aligned_cols=55 Identities=18% Similarity=0.257 Sum_probs=40.6
Q ss_pred CCHHHHHHHHHHh---C-HHHHHHHHHHccCCC--CCCCCCCCCHHHHHHHHHHHHHHHHH
Q 037230 455 LDPVVANFMKVLC---S-QEVYRYALMEMGLDA--PDLPIGMLSNVHLNRCEEVLQQFIEA 509 (815)
Q Consensus 455 L~~~Vq~Li~~I~---d-~~~~~~~~~e~~~d~--~k~PLGkLS~~qI~~a~~vL~ei~~~ 509 (815)
|...+..|+..+| + +..+|.+|..+|++. -+.||..||.++.++-.++|.++...
T Consensus 222 l~~~l~~l~~~~~~~~~~~~~~K~al~~~G~~~g~~R~Pl~~l~~~~~~~l~~~l~~~~~~ 282 (288)
T 2nuw_A 222 LQELINRLADILRKYGSISAIYVLVNEFQGYDVGYPRPPIFPLTDEEALSLKREIEPLKRK 282 (288)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSCCCBCCTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHcCCCCCCcCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3455666777665 3 556888888888864 57999999999988888887776533
Done!