Query 037231
Match_columns 108
No_of_seqs 129 out of 203
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 10:04:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037231.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037231hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03222 rapid alkalinization 100.0 1.1E-34 2.3E-39 209.5 4.8 76 26-105 42-119 (119)
2 PLN03221 rapid alkalinization 100.0 1.8E-33 3.9E-38 206.9 5.6 76 26-105 46-137 (137)
3 PF05498 RALF: Rapid ALkaliniz 99.9 3.4E-28 7.3E-33 160.1 3.7 65 37-105 2-66 (66)
4 PF07172 GRP: Glycine rich pro 88.2 0.47 1E-05 33.1 2.6 15 1-15 1-15 (95)
5 PF15240 Pro-rich: Proline-ric 76.3 1.6 3.5E-05 34.0 1.6 17 6-22 1-17 (179)
6 PF06404 PSK: Phytosulfokine p 51.3 5.4 0.00012 27.1 0.2 14 47-60 62-75 (81)
7 PRK10040 hypothetical protein; 51.0 20 0.00043 23.0 2.7 30 7-36 3-33 (52)
8 PF07771 TSGP1: Tick salivary 35.6 23 0.0005 25.7 1.4 21 1-21 1-21 (120)
9 PF08194 DIM: DIM protein; In 30.0 82 0.0018 18.7 2.9 27 8-36 8-34 (36)
10 PF12276 DUF3617: Protein of u 27.6 51 0.0011 23.4 2.1 9 22-30 31-39 (162)
11 PF12590 Acyl-thio_N: Acyl-ATP 26.1 56 0.0012 24.4 2.1 20 6-26 98-117 (129)
12 PHA02291 hypothetical protein 25.8 73 0.0016 23.6 2.6 27 1-27 1-29 (132)
13 PRK15205 long polar fimbrial p 25.2 79 0.0017 23.1 2.8 36 1-36 1-45 (176)
14 PF15284 PAGK: Phage-encoded v 23.9 66 0.0014 21.2 1.9 11 3-13 4-14 (61)
No 1
>PLN03222 rapid alkalinization factor 23-like protein; Provisional
Probab=100.00 E-value=1.1e-34 Score=209.46 Aligned_cols=76 Identities=41% Similarity=0.692 Sum_probs=71.2
Q ss_pred ceeeeeeeccc--ccccccCCchhhhcccccCCceeccccccCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCccccc
Q 037231 26 IKSINVVGRIE--DENEMSMPTEESRRHLNAGQDCISYDAMLANKVPCSLKGHSYYDCRNRTGSGPVNPYRRECSTSTNC 103 (108)
Q Consensus 26 ~~s~~v~ec~~--~eeE~~m~sE~sRR~L~~~~~yIsYgAL~~d~vPC~~~G~sY~nC~p~~~~~paNpY~RGCs~itrC 103 (108)
+|+|+|+||++ +|+||+||||++||+|++ .+||||+||++|.+||+++|+|||||+++ +|+|||+|||++||||
T Consensus 42 ~C~Gsi~EC~~~~~e~e~~mdSe~sRR~L~~-~rYISYgALrrd~vPCsrrG~SYynC~~~---~~ANPY~RGCs~ITrC 117 (119)
T PLN03222 42 KCNGTIAECSLSTAEEEFEMDSEINRRILAT-TKYISYGALRRNTVPCSRRGASYYNCRRG---AQANPYSRGCSAITRC 117 (119)
T ss_pred cCCCCHHHhhcccccchhccccHHHHHHHhh-cCeecHHHhcCCCCCCCCCCCCccccCCC---CCCCCCCCCchhhccc
Confidence 58899999985 467899999999999997 59999999999999999999999999997 8999999999999999
Q ss_pred cC
Q 037231 104 ER 105 (108)
Q Consensus 104 rR 105 (108)
||
T Consensus 118 rR 119 (119)
T PLN03222 118 RR 119 (119)
T ss_pred cC
Confidence 97
No 2
>PLN03221 rapid alkalinization factor 23; Provisional
Probab=99.98 E-value=1.8e-33 Score=206.94 Aligned_cols=76 Identities=38% Similarity=0.677 Sum_probs=68.8
Q ss_pred ceeeeeeecc-------------cccc---cccCCchhhhcccccCCceeccccccCCCCCCCCCCCCCcCCCCCCCCCC
Q 037231 26 IKSINVVGRI-------------EDEN---EMSMPTEESRRHLNAGQDCISYDAMLANKVPCSLKGHSYYDCRNRTGSGP 89 (108)
Q Consensus 26 ~~s~~v~ec~-------------~~ee---E~~m~sE~sRR~L~~~~~yIsYgAL~~d~vPC~~~G~sY~nC~p~~~~~p 89 (108)
.|.|+|+||+ +++| |++||||++||+|++ ++||||+||++|.+||+++|+|||||+++ +|
T Consensus 46 ~C~GsiaEC~~~~~~~~d~e~~~g~~~~~~e~~MdSE~sRR~L~~-~rYISYgALrrd~vPCsrrG~SYynC~~~---~p 121 (137)
T PLN03221 46 ECRGTIAECSVSAALGDDGDLFYGGGEMGAEFEMDSEINRRILAT-RRYISYGALRRNTIPCSRRGASYYNCRRG---AQ 121 (137)
T ss_pred cccCCHHHHhhhhccccccccccccchhhhhhhcccHHHHHHHhc-CCccCHHHhccCCCCCCCCCCCccccCCC---CC
Confidence 3779999996 2222 779999999999987 68999999999999999999999999997 89
Q ss_pred CCCCCCCCCccccccC
Q 037231 90 VNPYRRECSTSTNCER 105 (108)
Q Consensus 90 aNpY~RGCs~itrCrR 105 (108)
+|||+|||++||||||
T Consensus 122 ANPY~RGCs~ITRCrR 137 (137)
T PLN03221 122 ANPYSRGCSAITRCRR 137 (137)
T ss_pred CCCCCCCcccccccCC
Confidence 9999999999999997
No 3
>PF05498 RALF: Rapid ALkalinization Factor (RALF) ; InterPro: IPR008801 RALF, a 5 kDa ubiquitous polypeptide in plants, arrests root growth and development.
Probab=99.94 E-value=3.4e-28 Score=160.08 Aligned_cols=65 Identities=51% Similarity=0.922 Sum_probs=61.1
Q ss_pred ccccccCCchhhhcccccCCceeccccccCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCccccccC
Q 037231 37 DENEMSMPTEESRRHLNAGQDCISYDAMLANKVPCSLKGHSYYDCRNRTGSGPVNPYRRECSTSTNCER 105 (108)
Q Consensus 37 ~eeE~~m~sE~sRR~L~~~~~yIsYgAL~~d~vPC~~~G~sY~nC~p~~~~~paNpY~RGCs~itrCrR 105 (108)
+|+|+.|+||++||+|+++ +||||+||++|.+||.++|.+|++|.++ +|+|||+|||++||||||
T Consensus 2 ee~~~~~~s~~~~R~~a~~-~yIsYgaL~~~~~pc~~~g~~~~~c~~~---~paNpY~RGC~~~~rCrr 66 (66)
T PF05498_consen 2 EEEEVVMESEASRRILAAR-RYISYGALRRDRVPCSPRGCSYYNCCPR---QPANPYSRGCSKITRCRR 66 (66)
T ss_pred hhHHhhhhhHHHHHHHhcC-CeecchhccCCCCCCCcccCCCcccCCC---CCCCCCCCCCCccccCCC
Confidence 4678899999999999975 9999999999999999999999999887 999999999999999997
No 4
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=88.21 E-value=0.47 Score=33.08 Aligned_cols=15 Identities=40% Similarity=0.516 Sum_probs=8.9
Q ss_pred CCchhHHHHHHHHHH
Q 037231 1 MGSKEMSLVLLMMAV 15 (108)
Q Consensus 1 ~~~~~~~~~~~~~~~ 15 (108)
|++|.+||+.++||+
T Consensus 1 MaSK~~llL~l~LA~ 15 (95)
T PF07172_consen 1 MASKAFLLLGLLLAA 15 (95)
T ss_pred CchhHHHHHHHHHHH
Confidence 899975554444333
No 5
>PF15240 Pro-rich: Proline-rich
Probab=76.27 E-value=1.6 Score=33.99 Aligned_cols=17 Identities=41% Similarity=0.536 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHhhC
Q 037231 6 MSLVLLMMAVVVAAAAT 22 (108)
Q Consensus 6 ~~~~~~~~~~~~~~~~~ 22 (108)
||||||+.||.+-++|.
T Consensus 1 MLlVLLSvALLALSSAQ 17 (179)
T PF15240_consen 1 MLLVLLSVALLALSSAQ 17 (179)
T ss_pred ChhHHHHHHHHHhhhcc
Confidence 79999988888777773
No 6
>PF06404 PSK: Phytosulfokine precursor protein (PSK); InterPro: IPR009438 This family consists of several plant specific phytosulfokine precursor proteins. Phytosulfokines, are active as either a pentapeptide or a C-terminally truncated tetrapeptide. These compounds were first isolated because of their ability to stimulate cell division in somatic embryo cultures of Asparagus officinalis [].; GO: 0008083 growth factor activity, 0008283 cell proliferation, 0005576 extracellular region
Probab=51.30 E-value=5.4 Score=27.14 Aligned_cols=14 Identities=43% Similarity=0.342 Sum_probs=10.3
Q ss_pred hhhcccccCCceec
Q 037231 47 ESRRHLNAGQDCIS 60 (108)
Q Consensus 47 ~sRR~L~~~~~yIs 60 (108)
..||.|++--.||=
T Consensus 62 L~RRtL~AHlDYIY 75 (81)
T PF06404_consen 62 LMRRTLAAHLDYIY 75 (81)
T ss_pred HHHHHHHHHhhhee
Confidence 57999987556774
No 7
>PRK10040 hypothetical protein; Provisional
Probab=50.99 E-value=20 Score=22.99 Aligned_cols=30 Identities=20% Similarity=0.082 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHhh-CCCCceeeeeeeccc
Q 037231 7 SLVLLMMAVVVAAAA-TPSGIKSINVVGRIE 36 (108)
Q Consensus 7 ~~~~~~~~~~~~~~~-~~~~~~s~~v~ec~~ 36 (108)
+++|..++.++|.++ ++=.|.-|-|..|.+
T Consensus 3 ~~~l~~l~~~~a~a~n~PCSG~KGGis~C~g 33 (52)
T PRK10040 3 ILFLGTLVSFYADAGNKPCSGKKGGISHCTG 33 (52)
T ss_pred hhHHHHHHHHHHHhcCCCCCCCCCCcccccC
Confidence 444555445544444 555788888888864
No 8
>PF07771 TSGP1: Tick salivary peptide group 1; InterPro: IPR011694 This entry contains a group of peptides derived from a salivary gland cDNA library of the tick Ixodes scapularis (Black-legged tick) []. Also present are peptides from a related tick species, Ixodes ricinus (Sheep tick). They are characterised by a putative signal peptide, indicative of secretion, and conserved cysteine residues.
Probab=35.63 E-value=23 Score=25.69 Aligned_cols=21 Identities=43% Similarity=0.514 Sum_probs=15.8
Q ss_pred CCchhHHHHHHHHHHHHHHhh
Q 037231 1 MGSKEMSLVLLMMAVVVAAAA 21 (108)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~ 21 (108)
||.--++|||..||.|+.+++
T Consensus 1 m~~~~~~~vlv~la~~~~~~~ 21 (120)
T PF07771_consen 1 MGLTVVTLVLVSLAFFGSAAA 21 (120)
T ss_pred CcceeehhhHHhHHhhhhhhh
Confidence 777778888888877776555
No 9
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=30.03 E-value=82 Score=18.71 Aligned_cols=27 Identities=30% Similarity=0.256 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHhhCCCCceeeeeeeccc
Q 037231 8 LVLLMMAVVVAAAATPSGIKSINVVGRIE 36 (108)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~s~~v~ec~~ 36 (108)
++|++++++.|..++ .|.=.--|.|++
T Consensus 8 ~~l~lLal~~a~~~~--pG~ViING~C~d 34 (36)
T PF08194_consen 8 FALLLLALAAAVPAT--PGNVIINGKCID 34 (36)
T ss_pred HHHHHHHHHhcccCC--CCeEEECceeee
Confidence 455555544444344 342222366653
No 10
>PF12276 DUF3617: Protein of unknown function (DUF3617); InterPro: IPR022061 This family of proteins is found in bacteria. Proteins in this family are typically between 155 and 179 amino acids in length. There is a single completely conserved residue C that may be functionally important.
Probab=27.63 E-value=51 Score=23.40 Aligned_cols=9 Identities=0% Similarity=-0.296 Sum_probs=5.4
Q ss_pred CCCCceeee
Q 037231 22 TPSGIKSIN 30 (108)
Q Consensus 22 ~~~~~~s~~ 30 (108)
.|+.+....
T Consensus 31 lWe~t~~~~ 39 (162)
T PF12276_consen 31 LWEVTTTTE 39 (162)
T ss_pred ccEEEEEec
Confidence 677665444
No 11
>PF12590 Acyl-thio_N: Acyl-ATP thioesterase; InterPro: IPR021113 This entry represents the N-terminal domain of acyl-ATP thioesterases from bacteria and eukaryotes. These proteins are typically between 120 and 131 amino acids in length. The plant acyl-acyl carrier protein (ACP) thioesterases (TEs) play an essential role in chain termination during de novo fatty acid synthesis [].; GO: 0016790 thiolester hydrolase activity
Probab=26.07 E-value=56 Score=24.42 Aligned_cols=20 Identities=20% Similarity=0.220 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHhhCCCCc
Q 037231 6 MSLVLLMMAVVVAAAATPSGI 26 (108)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~ 26 (108)
|||-..+ |+|.|||-.|..-
T Consensus 98 MLLAAIT-TIFlAAEKQW~mL 117 (129)
T PF12590_consen 98 MLLAAIT-TIFLAAEKQWTML 117 (129)
T ss_pred HHHHHHH-HHHHHhhhhhhhh
Confidence 5555555 8999999999753
No 12
>PHA02291 hypothetical protein
Probab=25.82 E-value=73 Score=23.63 Aligned_cols=27 Identities=15% Similarity=0.282 Sum_probs=15.6
Q ss_pred CCchh-HHHHHHHHHHHHHHhh-CCCCce
Q 037231 1 MGSKE-MSLVLLMMAVVVAAAA-TPSGIK 27 (108)
Q Consensus 1 ~~~~~-~~~~~~~~~~~~~~~~-~~~~~~ 27 (108)
|-.|. +|.||+...|+.+-.+ .|+..+
T Consensus 1 MS~K~~iFYiL~~~VL~~si~sY~~sS~~ 29 (132)
T PHA02291 1 MSRKASIFYILVVIVLAFSISSYYISSFM 29 (132)
T ss_pred CCcchhhHHHHHHHHHHHHHHHHhhheee
Confidence 45554 6666666555444444 888764
No 13
>PRK15205 long polar fimbrial protein LpfE; Provisional
Probab=25.18 E-value=79 Score=23.13 Aligned_cols=36 Identities=17% Similarity=0.083 Sum_probs=19.3
Q ss_pred CCchhHHHHHHHHHHHHHHhh-C------CCCceeeeeee--ccc
Q 037231 1 MGSKEMSLVLLMMAVVVAAAA-T------PSGIKSINVVG--RIE 36 (108)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~-~------~~~~~s~~v~e--c~~ 36 (108)
|.-|..++.|.++.+...+.+ . =+..++|+|.+ |.-
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~f~G~I~~~tC~i 45 (176)
T PRK15205 1 MKNKRALLPLALLLLTASGMAAPTDLGPAGDIHFTITIKAKACEL 45 (176)
T ss_pred CchHHHHHHHHHHhcchhhhcCCCcccCCeEEEEEEEEEecccee
Confidence 666776666666554222222 1 12447777765 753
No 14
>PF15284 PAGK: Phage-encoded virulence factor
Probab=23.92 E-value=66 Score=21.21 Aligned_cols=11 Identities=27% Similarity=0.434 Sum_probs=8.0
Q ss_pred chhHHHHHHHH
Q 037231 3 SKEMSLVLLMM 13 (108)
Q Consensus 3 ~~~~~~~~~~~ 13 (108)
+|.+||+|++.
T Consensus 4 ~ksifL~l~~~ 14 (61)
T PF15284_consen 4 FKSIFLALVFI 14 (61)
T ss_pred HHHHHHHHHHH
Confidence 67888887763
Done!