Query 037231
Match_columns 108
No_of_seqs 129 out of 203
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 17:06:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037231.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037231hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1cz6_A Protein (androctonin); 16.0 47 0.0016 17.5 0.7 15 70-84 9-23 (26)
2 3j1r_A Archaeal adhesion filam 8.8 2.7E+02 0.0094 14.7 2.6 16 5-20 3-18 (26)
3 2f93_B Sensory rhodopsin II tr 7.7 2.5E+02 0.0087 19.5 2.5 44 7-51 63-114 (122)
4 4aui_A Porin (PORB); membrane 7.6 1.1E+02 0.0039 22.7 0.6 18 4-21 2-19 (327)
5 3cx5_D Cytochrome C1, heme pro 7.0 1.4E+02 0.0047 23.1 0.9 15 1-16 208-222 (248)
6 1as5_A Conotoxin Y-PIIIE; neur 6.9 3.4E+02 0.012 14.2 2.7 12 95-106 14-25 (26)
7 3r2t_A Putative uncharacterize 6.9 1E+02 0.0034 24.1 0.0 13 6-18 26-38 (249)
8 1pp9_D Cytochrome C-1, cytochr 6.9 1.4E+02 0.0049 22.9 0.9 15 1-16 204-218 (241)
9 2hi2_A Fimbrial protein; type 6.6 3.4E+02 0.012 18.0 2.7 14 5-18 5-18 (158)
10 3r2i_A Exotoxin 5; structural 6.2 1.1E+02 0.0039 23.7 0.0 13 6-18 26-38 (249)
No 1
>1cz6_A Protein (androctonin); peptide, beta sheet, toxin; NMR {Androctonus australis} SCOP: j.3.1.3
Probab=15.96 E-value=47 Score=17.54 Aligned_cols=15 Identities=47% Similarity=1.119 Sum_probs=11.3
Q ss_pred CCCCCCCCCcCCCCC
Q 037231 70 PCSLKGHSYYDCRNR 84 (108)
Q Consensus 70 PC~~~G~sY~nC~p~ 84 (108)
.|.++|.-||.|..+
T Consensus 9 icrrrggcyykctnr 23 (26)
T 1cz6_A 9 ICRRRGGCYYKCTNR 23 (26)
T ss_dssp ECCSSSCCEEEECCC
T ss_pred HHHhcCceEEEccCC
Confidence 377788888888764
No 2
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=8.78 E-value=2.7e+02 Score=14.68 Aligned_cols=16 Identities=38% Similarity=0.501 Sum_probs=6.3
Q ss_pred hHHHHHHHHHHHHHHh
Q 037231 5 EMSLVLLMMAVVVAAA 20 (108)
Q Consensus 5 ~~~~~~~~~~~~~~~~ 20 (108)
|+.-++++..++++|+
T Consensus 3 piVA~~lLIviav~aa 18 (26)
T 3j1r_A 3 PVIATLLLILIAVAAA 18 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4333333334444443
No 3
>2f93_B Sensory rhodopsin II transducer; menbrane protein complex, signal transduction, photocycle ST membrane protein; HET: BOG RET; 2.00A {Natronomonas pharaonis} SCOP: f.17.4.1
Probab=7.73 E-value=2.5e+02 Score=19.47 Aligned_cols=44 Identities=11% Similarity=0.178 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHhhCCCCcee--eeeee------cccccccccCCchhhhcc
Q 037231 7 SLVLLMMAVVVAAAATPSGIKS--INVVG------RIEDENEMSMPTEESRRH 51 (108)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~s--~~v~e------c~~~eeE~~m~sE~sRR~ 51 (108)
++++..++++......|-.+-+ .++.. -++ +.|++.|-|++||-
T Consensus 63 liil~~v~lv~LgvvG~~lGR~t~~pL~rLs~~A~aIa-~GdLDVdiet~RR~ 114 (122)
T 2f93_B 63 ILGLIILLGINLGLVAATLGGDTAASLSTLAAKASRMG-DGDLDVELETRREN 114 (122)
T ss_dssp HHHHHHHHHHHHHHHC-------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-cCCCCCcccccccc
Confidence 4444454555555555553322 22222 121 35566677777774
No 4
>4aui_A Porin (PORB); membrane protein, outer membrane protein, infection, invasio; HET: ATP; 3.20A {Neisseria gonorrhoeae}
Probab=7.62 E-value=1.1e+02 Score=22.71 Aligned_cols=18 Identities=39% Similarity=0.388 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHhh
Q 037231 4 KEMSLVLLMMAVVVAAAA 21 (108)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~ 21 (108)
|..||.|++++++++|.+
T Consensus 2 KKtllAla~~a~~a~Aqs 19 (327)
T 4aui_A 2 KKSLIALTLAALPVAAMA 19 (327)
T ss_dssp ------------------
T ss_pred cHHHHHHHHHHHHHHHhc
Confidence 445666666666555554
No 5
>3cx5_D Cytochrome C1, heme protein, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: a.3.1.3 f.23.11.1 PDB: 1kyo_D* 2ibz_D* 3cxh_D* 1kb9_D* 1p84_D* 1ezv_D*
Probab=7.00 E-value=1.4e+02 Score=23.13 Aligned_cols=15 Identities=20% Similarity=0.434 Sum_probs=7.2
Q ss_pred CCchhHHHHHHHHHHH
Q 037231 1 MGSKEMSLVLLMMAVV 16 (108)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (108)
||+| .+++|++|+++
T Consensus 208 ~G~~-vl~fL~il~~l 222 (248)
T 3cx5_D 208 LGLK-TVIILSSLYLL 222 (248)
T ss_dssp HHHH-HHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHH
Confidence 4666 44444444433
No 6
>1as5_A Conotoxin Y-PIIIE; neurotoxin, acetylcholine; HET: HYP; NMR {Conus purpurascens} SCOP: j.30.1.4 PDB: 1jlo_A*
Probab=6.94 E-value=3.4e+02 Score=14.19 Aligned_cols=12 Identities=33% Similarity=0.911 Sum_probs=8.8
Q ss_pred CCCCccccccCC
Q 037231 95 RECSTSTNCERS 106 (108)
Q Consensus 95 RGCs~itrCrR~ 106 (108)
.||+...-|++.
T Consensus 14 pgc~~a~cc~~~ 25 (26)
T 1as5_A 14 PGCSSASCCQRX 25 (26)
T ss_dssp TTCTTCCCSCC-
T ss_pred CCcchhhhhccc
Confidence 688888888764
No 7
>3r2t_A Putative uncharacterized protein; superantigen-like protein, extracellular region; 2.21A {Staphylococcus aureus}
Probab=6.86 E-value=1e+02 Score=24.05 Aligned_cols=13 Identities=15% Similarity=0.253 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH
Q 037231 6 MSLVLLMMAVVVA 18 (108)
Q Consensus 6 ~~~~~~~~~~~~~ 18 (108)
++|+|++||+-|-
T Consensus 26 asLalgiL~TGvi 38 (249)
T 3r2t_A 26 AIFILGILTTSVM 38 (249)
T ss_dssp -------------
T ss_pred HHHHHHHhhccee
Confidence 8999999998774
No 8
>1pp9_D Cytochrome C-1, cytochrome C1, heme protein, mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: a.3.1.3 f.23.11.1 PDB: 1bgy_D* 1be3_D* 1l0n_D* 1ntk_D* 1ntm_D* 1ntz_D* 1nu1_D* 1l0l_D* 1ppj_D* 1sqb_D* 1sqp_D* 1sqq_D* 1sqv_D* 1sqx_D* 2a06_D* 2fyu_D* 2ybb_D* 1bcc_D* 2bcc_D* 3bcc_D* ...
Probab=6.85 E-value=1.4e+02 Score=22.93 Aligned_cols=15 Identities=33% Similarity=0.503 Sum_probs=7.2
Q ss_pred CCchhHHHHHHHHHHH
Q 037231 1 MGSKEMSLVLLMMAVV 16 (108)
Q Consensus 1 ~~~~~~~~~~~~~~~~ 16 (108)
||+| .+++|++|+++
T Consensus 204 ~G~~-vl~fL~il~~l 218 (241)
T 1pp9_D 204 MGLK-MLLMMGLLLPL 218 (241)
T ss_dssp HHHH-HHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHH
Confidence 4666 44444444433
No 9
>2hi2_A Fimbrial protein; type IV pilin, fiber-forming protein, membrane protein, DNA protein, contractIle protein, cell adhesion; HET: MEA GLA DT6 HTO; 2.30A {Neisseria gonorrhoeae} PDB: 2hil_A* 1ay2_A* 2pil_A*
Probab=6.58 E-value=3.4e+02 Score=18.01 Aligned_cols=14 Identities=21% Similarity=0.591 Sum_probs=7.2
Q ss_pred hHHHHHHHHHHHHH
Q 037231 5 EMSLVLLMMAVVVA 18 (108)
Q Consensus 5 ~~~~~~~~~~~~~~ 18 (108)
|+++||+++++..+
T Consensus 5 El~vvi~ii~il~~ 18 (158)
T 2hi2_A 5 ELMIVIAIVGILAA 18 (158)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555554443
No 10
>3r2i_A Exotoxin 5; structural genomics, center for structural genomics of infec diseases, csgid, superantigen-like protein; 2.30A {Staphylococcus aureus subsp}
Probab=6.22 E-value=1.1e+02 Score=23.74 Aligned_cols=13 Identities=23% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH
Q 037231 6 MSLVLLMMAVVVA 18 (108)
Q Consensus 6 ~~~~~~~~~~~~~ 18 (108)
++|+|++||+-|-
T Consensus 26 asLalgiL~TG~i 38 (249)
T 3r2i_A 26 ATLALGILTTGVF 38 (249)
T ss_dssp -------------
T ss_pred HHHHHHHhhccee
Confidence 8999999998774
Done!