Query 037231
Match_columns 108
No_of_seqs 129 out of 203
Neff 4.1
Searched_HMMs 13730
Date Mon Mar 25 17:06:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037231.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/037231hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3cx5d2 f.23.11.1 (D:261-307) 50.4 2.7 0.00019 24.0 1.0 16 1-17 9-24 (47)
2 d1ppjd2 f.23.11.1 (D:196-241) 47.2 2.9 0.00021 23.5 0.9 16 1-17 9-24 (46)
3 d1omca_ g.3.6.1 (A:) Conotoxin 41.6 3.7 0.00027 20.8 0.6 20 70-97 7-26 (27)
4 d1e9ta_ g.16.1.1 (A:) Intestin 11.3 86 0.0063 17.6 2.6 16 67-82 17-32 (59)
5 d2pila_ d.24.1.1 (A:) Pilin Gc 7.0 1.5E+02 0.011 16.8 2.6 6 6-11 6-11 (158)
6 d1hvwa_ g.3.6.2 (A:) Atracotox 7.0 87 0.0063 15.2 1.1 9 89-97 6-14 (26)
7 d2v5za2 d.16.1.5 (A:290-401) M 6.9 70 0.0051 18.1 0.9 11 89-99 100-110 (112)
8 d2dw4a3 d.16.1.5 (A:655-763) L 5.8 85 0.0062 17.4 0.8 11 89-99 98-108 (109)
9 d1wmta_ g.3.7.2 (A:) Istx {Sco 5.6 15 0.0011 19.9 -2.6 15 90-104 26-40 (41)
10 d1ozbi_ g.74.1.1 (I:) Preprote 5.5 1.2E+02 0.0088 14.8 1.2 16 67-83 5-20 (26)
No 1
>d3cx5d2 f.23.11.1 (D:261-307) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=50.38 E-value=2.7 Score=24.00 Aligned_cols=16 Identities=19% Similarity=0.387 Sum_probs=9.7
Q ss_pred CCchhHHHHHHHHHHHH
Q 037231 1 MGSKEMSLVLLMMAVVV 17 (108)
Q Consensus 1 ~~~~~~~~~~~~~~~~~ 17 (108)
||+| +++||.++++..
T Consensus 9 mg~K-~~~i~s~l~~~~ 24 (47)
T d3cx5d2 9 LGLK-TVIILSSLYLLS 24 (47)
T ss_dssp HHHH-HHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHH
Confidence 6888 566666554443
No 2
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=47.21 E-value=2.9 Score=23.54 Aligned_cols=16 Identities=38% Similarity=0.542 Sum_probs=9.5
Q ss_pred CCchhHHHHHHHHHHHH
Q 037231 1 MGSKEMSLVLLMMAVVV 17 (108)
Q Consensus 1 ~~~~~~~~~~~~~~~~~ 17 (108)
||+| .+++|.+|++.+
T Consensus 9 mG~K-v~~~l~~l~~l~ 24 (46)
T d1ppjd2 9 MGLK-MLLMMGLLLPLV 24 (46)
T ss_dssp HHHH-HHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHH
Confidence 6888 555555555444
No 3
>d1omca_ g.3.6.1 (A:) Conotoxin {Sea snail (Conus geographus), G IVa [TaxId: 6491]}
Probab=41.65 E-value=3.7 Score=20.76 Aligned_cols=20 Identities=45% Similarity=1.127 Sum_probs=12.9
Q ss_pred CCCCCCCCCcCCCCCCCCCCCCCCCCCC
Q 037231 70 PCSLKGHSYYDCRNRTGSGPVNPYRREC 97 (108)
Q Consensus 70 PC~~~G~sY~nC~p~~~~~paNpY~RGC 97 (108)
.|++. | |||.. .+|||+..|
T Consensus 7 scspt--s-ynccr-----scnpytkrc 26 (27)
T d1omca_ 7 SCSPT--S-YNCCR-----SCNPYTKRC 26 (27)
T ss_dssp BCCTT--T-TCBSS-----CEETTTTEE
T ss_pred cCCCc--c-cchhc-----ccCcccccc
Confidence 36643 3 57663 599998765
No 4
>d1e9ta_ g.16.1.1 (A:) Intestinal trefoil factor {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.34 E-value=86 Score=17.61 Aligned_cols=16 Identities=19% Similarity=0.548 Sum_probs=8.7
Q ss_pred CCCCCCCCCCCCcCCC
Q 037231 67 NKVPCSLKGHSYYDCR 82 (108)
Q Consensus 67 d~vPC~~~G~sY~nC~ 82 (108)
.++.|...|.+-..|.
T Consensus 17 ~R~dCg~~git~~~C~ 32 (59)
T d1e9ta_ 17 DRVDCGYPHVTPKECN 32 (59)
T ss_dssp TCCCCCCSSCCTTTTT
T ss_pred ccccCCCCCCCHHHHh
Confidence 4566665555444554
No 5
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=7.05 E-value=1.5e+02 Score=16.84 Aligned_cols=6 Identities=17% Similarity=0.512 Sum_probs=2.3
Q ss_pred HHHHHH
Q 037231 6 MSLVLL 11 (108)
Q Consensus 6 ~~~~~~ 11 (108)
+++|++
T Consensus 6 LlVVia 11 (158)
T d2pila_ 6 LMIVIA 11 (158)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 6
>d1hvwa_ g.3.6.2 (A:) Atracotoxin-hvI (versutoxin) {Australian funnel-web spider (Hadronyche versuta) [TaxId: 6904]}
Probab=6.96 E-value=87 Score=15.16 Aligned_cols=9 Identities=33% Similarity=0.914 Sum_probs=4.2
Q ss_pred CCCCCCCCC
Q 037231 89 PVNPYRREC 97 (108)
Q Consensus 89 paNpY~RGC 97 (108)
+.-||+-.|
T Consensus 6 qpcpynenc 14 (26)
T d1hvwa_ 6 QPCPYNENC 14 (26)
T ss_dssp SBCSSTTSB
T ss_pred CcCCCCccc
Confidence 334555444
No 7
>d2v5za2 d.16.1.5 (A:290-401) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.92 E-value=70 Score=18.05 Aligned_cols=11 Identities=27% Similarity=0.413 Sum_probs=8.4
Q ss_pred CCCCCCCCCCc
Q 037231 89 PVNPYRRECST 99 (108)
Q Consensus 89 paNpY~RGCs~ 99 (108)
..+||+||+-.
T Consensus 100 ~~dp~~~GsYs 110 (112)
T d2v5za2 100 CEEQYSGGCYT 110 (112)
T ss_dssp GGCTTTCSSSC
T ss_pred CCCCccCcccc
Confidence 36899999854
No 8
>d2dw4a3 d.16.1.5 (A:655-763) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.84 E-value=85 Score=17.36 Aligned_cols=11 Identities=18% Similarity=0.489 Sum_probs=8.5
Q ss_pred CCCCCCCCCCc
Q 037231 89 PVNPYRRECST 99 (108)
Q Consensus 89 paNpY~RGCs~ 99 (108)
..+||+||+-.
T Consensus 98 ~~dp~~~GsYS 108 (109)
T d2dw4a3 98 RADPWARGSYS 108 (109)
T ss_dssp TTCTTTSSSCE
T ss_pred CCCCccCEecC
Confidence 46899999853
No 9
>d1wmta_ g.3.7.2 (A:) Istx {Scorpion (Opisthacanthus madagascariensis) [TaxId: 167108]}
Probab=5.62 E-value=15 Score=19.89 Aligned_cols=15 Identities=27% Similarity=0.629 Sum_probs=9.5
Q ss_pred CCCCCCCCCcccccc
Q 037231 90 VNPYRRECSTSTNCE 104 (108)
Q Consensus 90 aNpY~RGCs~itrCr 104 (108)
+.--+|.|..++.|.
T Consensus 26 akcmnrhcncynncp 40 (41)
T d1wmta_ 26 AKCMNRHCNCYNNCP 40 (41)
T ss_dssp CEEETTEEECCCCCC
T ss_pred HHHhhhhcccccCCC
Confidence 334457788777773
No 10
>d1ozbi_ g.74.1.1 (I:) Preprotein translocase SecA C-terminal domain {Haemophilus influenzae [TaxId: 727]}
Probab=5.50 E-value=1.2e+02 Score=14.79 Aligned_cols=16 Identities=31% Similarity=0.953 Sum_probs=10.6
Q ss_pred CCCCCCCCCCCCcCCCC
Q 037231 67 NKVPCSLKGHSYYDCRN 83 (108)
Q Consensus 67 d~vPC~~~G~sY~nC~p 83 (108)
+.-||. +|..|..|.-
T Consensus 5 ~~CpCg-SgkkyK~C~G 20 (26)
T d1ozbi_ 5 EPCPCG-SGKKYKHCHG 20 (26)
T ss_dssp SBCTTT-CSSBGGGTTT
T ss_pred CcCCCC-CCccHHHcCC
Confidence 344676 6777877764
Done!