Query 037233
Match_columns 88
No_of_seqs 102 out of 203
Neff 3.4
Searched_HMMs 13730
Date Mon Mar 25 17:07:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037233.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/037233hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2h9ec1 g.22.1.1 (C:6-83) Anti 63.2 0.24 1.8E-05 29.3 -2.2 53 28-81 8-74 (78)
2 d1jv2b5 g.3.11.6 (B:563-605) I 55.7 2.1 0.00015 23.5 1.2 19 55-73 21-40 (43)
3 d1exta1 g.24.1.1 (A:13-71) Tum 53.0 1.4 9.9E-05 24.9 0.0 25 53-80 16-49 (59)
4 d2aepa1 b.68.1.1 (A:83-469) In 45.2 2.2 0.00016 32.8 0.1 19 61-79 185-203 (387)
5 d1f8ea_ b.68.1.1 (A:) Influenz 41.0 2.8 0.0002 32.2 0.1 17 62-78 188-204 (388)
6 d1xu2r_ g.24.1.2 (R:) Tumor ne 39.1 4.5 0.00033 21.5 0.7 19 34-52 17-35 (36)
7 d2heyr3 g.24.1.1 (R:29-82) Tum 25.3 4.6 0.00033 22.3 -0.8 26 52-80 12-45 (54)
8 d1hx2a_ g.22.1.2 (A:) BSTI {Fi 24.2 1.1 8.2E-05 25.3 -3.7 35 28-66 11-45 (60)
9 d1nsca_ b.68.1.1 (A:) Influenz 24.1 5.2 0.00038 30.6 -1.0 18 61-78 190-208 (390)
10 d1kloa3 g.3.11.2 (A:122-172) L 23.2 12 0.00087 19.9 0.7 20 58-77 1-27 (51)
No 1
>d2h9ec1 g.22.1.1 (C:6-83) Anticoagulant protein {Dog hookworm (Ancylostoma caninum) [TaxId: 29170]}
Probab=63.25 E-value=0.24 Score=29.28 Aligned_cols=53 Identities=26% Similarity=0.545 Sum_probs=22.6
Q ss_pred CCChH-HhhHHHhhcCcchHHHHHHhH------hhccccccCCCCCCCC-------CCCCcccccccC
Q 037233 28 DFCDS-KCAVRCSKAGREDRCLKYCGI------CCDKCHCVPSGTYGHK-------DECPCYRDLKNS 81 (88)
Q Consensus 28 ~~C~~-~C~~RCs~~~~~~~C~~~C~~------CC~~C~CVP~GtyGnk-------~~CpCY~~m~t~ 81 (88)
.+|.+ .|...|+.-.....|...++. |=+-|.| |+|++-|. ++|||+-+-+..
T Consensus 8 ~~C~~~~C~~tC~~~~~~~~c~~~~~~~c~~~~CveGC~C-p~G~v~~~~g~CV~~~~CpC~~~g~~Y 74 (78)
T d2h9ec1 8 DSCGSKECDKKCKYDGVEEEDDEEPNVPCLVRVCHQDCVC-EEGFYRNKDDKCVSAEDCELDNMDFIY 74 (78)
T ss_dssp C-------CCBCCCTTCC-------------------CEE-CSSCEECTTCCEECHHHHGGGGEEEEC
T ss_pred cccCCCcCccccCCCcccccccccCCccccCCCCCCcCCC-CCCeeEcCCCCEEChhhCCcccCCEEc
Confidence 35654 466666654444444444432 3356778 89998654 468898765554
No 2
>d1jv2b5 g.3.11.6 (B:563-605) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=55.68 E-value=2.1 Score=23.46 Aligned_cols=19 Identities=42% Similarity=1.436 Sum_probs=14.2
Q ss_pred hccccccCCCCCCCC-CCCC
Q 037233 55 CDKCHCVPSGTYGHK-DECP 73 (88)
Q Consensus 55 C~~C~CVP~GtyGnk-~~Cp 73 (88)
|++|.|--||-+|.. |+||
T Consensus 21 cG~C~C~~~gy~G~~Ce~Cp 40 (43)
T d1jv2b5 21 CGSCVCIQPGSYGDTCEKCP 40 (43)
T ss_dssp TTEEEECCSSCBSTTSCBCT
T ss_pred CCEeEeCCCCccCCccccCC
Confidence 789999767877765 5565
No 3
>d1exta1 g.24.1.1 (A:13-71) Tumor necrosis factor (TNF) receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=52.98 E-value=1.4 Score=24.86 Aligned_cols=25 Identities=44% Similarity=1.080 Sum_probs=17.4
Q ss_pred HhhccccccCCCCC------CC--CCCC-Cccccccc
Q 037233 53 ICCDKCHCVPSGTY------GH--KDEC-PCYRDLKN 80 (88)
Q Consensus 53 ~CC~~C~CVP~Gty------Gn--k~~C-pCY~~m~t 80 (88)
.||.+| |+|+| +. .-+| ||-..-.+
T Consensus 16 ~cC~~C---ppG~~~~~~Ct~~~~~t~C~pC~~gtyt 49 (59)
T d1exta1 16 ICCTKC---HKGTYLYNDCPGPGQDTDCRECESGSFT 49 (59)
T ss_dssp CEEECB---CTTEEEEECCSSTTSCCEEEECCTTEEC
T ss_pred cCCCCC---CCCCeecCccCCCCCCCEeccCCCCCcc
Confidence 567776 89988 42 4688 88776544
No 4
>d2aepa1 b.68.1.1 (A:83-469) Influenza neuraminidase {Influenza A virus, different strains [TaxId: 11320]}
Probab=45.18 E-value=2.2 Score=32.79 Aligned_cols=19 Identities=37% Similarity=0.754 Sum_probs=15.9
Q ss_pred cCCCCCCCCCCCCcccccc
Q 037233 61 VPSGTYGHKDECPCYRDLK 79 (88)
Q Consensus 61 VP~GtyGnk~~CpCY~~m~ 79 (88)
.++|+.++.|||.||.+..
T Consensus 185 ~l~g~~~HiEECSCYp~~~ 203 (387)
T d2aepa1 185 PLSGSAQHVEECSCYPRYP 203 (387)
T ss_dssp ECCSSCCCCEEEEEEEETT
T ss_pred ecCCCcCceEeeeecCCCC
Confidence 3679999999999998763
No 5
>d1f8ea_ b.68.1.1 (A:) Influenza neuraminidase {Influenza A virus, different strains [TaxId: 11320]}
Probab=41.03 E-value=2.8 Score=32.21 Aligned_cols=17 Identities=41% Similarity=0.892 Sum_probs=14.7
Q ss_pred CCCCCCCCCCCCccccc
Q 037233 62 PSGTYGHKDECPCYRDL 78 (88)
Q Consensus 62 P~GtyGnk~~CpCY~~m 78 (88)
++|+.++.|||.||.+.
T Consensus 188 l~g~~~HiEECSCYp~~ 204 (388)
T d1f8ea_ 188 LAGTAKHIEECSCYGER 204 (388)
T ss_dssp CCSSCCCCEEEEEEEET
T ss_pred cCCCcCceEeeeecCCC
Confidence 57899999999999874
No 6
>d1xu2r_ g.24.1.2 (R:) Tumor necrosis factor receptor superfamily member 17, BCMA {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.12 E-value=4.5 Score=21.54 Aligned_cols=19 Identities=37% Similarity=0.997 Sum_probs=16.8
Q ss_pred hhHHHhhcCcchHHHHHHh
Q 037233 34 CAVRCSKAGREDRCLKYCG 52 (88)
Q Consensus 34 C~~RCs~~~~~~~C~~~C~ 52 (88)
|.-|||..+-+-.|.+||+
T Consensus 17 c~lrcs~~~ppl~cq~yc~ 35 (36)
T d1xu2r_ 17 CQLRCSSNTPPLTCQRYCN 35 (36)
T ss_dssp GGGTTTSSSCCGGGHHHHH
T ss_pred ceeecCCCCCchhhhhhcc
Confidence 7789998888999999996
No 7
>d2heyr3 g.24.1.1 (R:29-82) Tumor necrosis factor receptor superfamily member 4, OX40L receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.34 E-value=4.6 Score=22.32 Aligned_cols=26 Identities=31% Similarity=0.851 Sum_probs=16.3
Q ss_pred hHhhccccccCCCCC-------CCCCCC-Cccccccc
Q 037233 52 GICCDKCHCVPSGTY-------GHKDEC-PCYRDLKN 80 (88)
Q Consensus 52 ~~CC~~C~CVP~Gty-------Gnk~~C-pCY~~m~t 80 (88)
|.||.+| ||||| +..-+| ||-.+..|
T Consensus 12 g~CC~~C---~pG~~~~~~Cs~~~~t~C~pC~~gtyt 45 (54)
T d2heyr3 12 DRCCHEC---RPGNGMVSRCSRSQNTVCRPCGPGFYN 45 (54)
T ss_dssp TEEEECB---CTTEEEEECCCSSCCCEEEECCTTEEC
T ss_pred CeECCCC---CCCCeEcCcCCCCCCCeeccCcCCCcc
Confidence 5677776 78876 344567 66555443
No 8
>d1hx2a_ g.22.1.2 (A:) BSTI {Fire-bellied toad (Bombina bombina) [TaxId: 8345]}
Probab=24.20 E-value=1.1 Score=25.26 Aligned_cols=35 Identities=34% Similarity=0.779 Sum_probs=24.5
Q ss_pred CCChHHhhHHHhhcCcchHHHHHHhHhhccccccCCCCC
Q 037233 28 DFCDSKCAVRCSKAGREDRCLKYCGICCDKCHCVPSGTY 66 (88)
Q Consensus 28 ~~C~~~C~~RCs~~~~~~~C~~~C~~CC~~C~CVP~Gty 66 (88)
..|+++|..-|+.-.....|.+.|- +-|.| |+|++
T Consensus 11 ~~C~s~Cp~tC~~~~~~~~C~~~C~---eGC~C-p~G~v 45 (60)
T d1hx2a_ 11 QTCASSCPKTCETRNKLVLCDKKCN---QRCGC-ISGTV 45 (60)
T ss_dssp ESSCCSSCCCTTTCCCSSSCSSCCC---SEEEE-CTTCE
T ss_pred CcccCCCccccCCCCCCCCCCCCCC---ccCCC-CCCEe
Confidence 4688888888887666666765443 55777 78876
No 9
>d1nsca_ b.68.1.1 (A:) Influenza neuraminidase {Influenza B virus, different strains [TaxId: 11520]}
Probab=24.14 E-value=5.2 Score=30.63 Aligned_cols=18 Identities=33% Similarity=0.947 Sum_probs=13.9
Q ss_pred cCCCCCCCCCCCCc-cccc
Q 037233 61 VPSGTYGHKDECPC-YRDL 78 (88)
Q Consensus 61 VP~GtyGnk~~CpC-Y~~m 78 (88)
.++|..++.|||.| |.+.
T Consensus 190 ~l~g~~~HiEECSC~Yp~~ 208 (390)
T d1nsca_ 190 FPTGRVEHTEECTCGFASN 208 (390)
T ss_dssp CCEESCSBCEEEEEEESSS
T ss_pred ecCCCcCceEeeeccCCCC
Confidence 35688889999999 7654
No 10
>d1kloa3 g.3.11.2 (A:122-172) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.23 E-value=12 Score=19.92 Aligned_cols=20 Identities=35% Similarity=0.991 Sum_probs=13.5
Q ss_pred ccccCCCCCCCC-------CCCCcccc
Q 037233 58 CHCVPSGTYGHK-------DECPCYRD 77 (88)
Q Consensus 58 C~CVP~GtyGnk-------~~CpCY~~ 77 (88)
|.|-|.||.++. ..|+|-.+
T Consensus 1 C~C~~~Gs~~~~~~Cd~~tGqC~Ck~~ 27 (51)
T d1kloa3 1 CACNPYGTVQQQSSCNPVTGQCQCLPH 27 (51)
T ss_dssp CCCCTTTBGGGCCCCCTTTCCCCBCTT
T ss_pred CcCCCCcccCCCCccCCCCCeecCCCC
Confidence 778899987654 35666544
Done!