Query 037236
Match_columns 953
No_of_seqs 802 out of 5936
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 10:08:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037236.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037236hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 2E-150 5E-155 1371.5 90.6 811 125-943 47-857 (857)
2 PLN03081 pentatricopeptide (PP 100.0 3E-122 7E-127 1097.0 68.8 614 331-945 84-697 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 4.2E-95 9E-100 885.8 73.7 677 23-711 46-727 (857)
4 PLN03081 pentatricopeptide (PP 100.0 1.8E-67 3.9E-72 627.5 52.5 474 228-708 84-561 (697)
5 PLN03218 maturation of RBCL 1; 100.0 8.2E-66 1.8E-70 612.5 53.3 523 95-675 367-916 (1060)
6 PLN03218 maturation of RBCL 1; 100.0 7.4E-66 1.6E-70 612.9 51.7 520 196-738 366-908 (1060)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 2.2E-40 4.8E-45 415.2 76.3 754 27-803 124-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.9E-40 4.1E-45 415.8 75.5 758 27-806 55-867 (899)
9 PF14432 DYW_deaminase: DYW fa 100.0 3.5E-34 7.5E-39 249.1 8.4 106 812-935 2-116 (116)
10 PRK11447 cellulose synthase su 100.0 2.6E-23 5.6E-28 260.6 69.9 666 31-808 31-744 (1157)
11 PRK11447 cellulose synthase su 100.0 4.8E-23 1E-27 258.1 62.4 636 23-777 57-749 (1157)
12 PRK09782 bacteriophage N4 rece 99.9 2.5E-22 5.4E-27 239.2 60.5 662 30-804 44-739 (987)
13 PRK09782 bacteriophage N4 rece 99.9 2.4E-21 5.2E-26 230.9 60.0 618 110-804 56-705 (987)
14 KOG4626 O-linked N-acetylgluco 99.9 2E-20 4.4E-25 196.0 33.0 443 235-796 52-510 (966)
15 KOG4626 O-linked N-acetylgluco 99.9 4.3E-19 9.3E-24 186.1 32.5 354 438-803 117-483 (966)
16 KOG2002 TPR-containing nuclear 99.8 2.6E-16 5.7E-21 174.8 46.9 580 216-807 146-800 (1018)
17 TIGR00990 3a0801s09 mitochondr 99.8 2E-16 4.4E-21 186.4 42.6 247 552-804 308-570 (615)
18 KOG2002 TPR-containing nuclear 99.8 1.4E-14 3.1E-19 161.2 48.7 559 114-735 146-741 (1018)
19 PRK11788 tetratricopeptide rep 99.8 3.9E-17 8.4E-22 182.8 29.5 291 517-813 45-355 (389)
20 TIGR00990 3a0801s09 mitochondr 99.8 2.2E-15 4.8E-20 177.6 42.5 248 508-804 332-596 (615)
21 PRK11788 tetratricopeptide rep 99.8 1.3E-16 2.8E-21 178.6 30.6 292 446-774 44-354 (389)
22 PRK15174 Vi polysaccharide exp 99.8 7.9E-16 1.7E-20 180.5 38.1 329 439-776 44-386 (656)
23 PRK10049 pgaA outer membrane p 99.8 2E-15 4.4E-20 181.1 38.8 362 408-805 51-456 (765)
24 PRK15174 Vi polysaccharide exp 99.7 3.9E-15 8.4E-20 174.7 36.3 324 472-805 42-381 (656)
25 KOG4318 Bicoid mRNA stability 99.7 3.8E-15 8.3E-20 163.3 31.7 263 126-421 22-286 (1088)
26 PRK14574 hmsH outer membrane p 99.7 5.8E-14 1.3E-18 164.7 41.9 433 279-805 45-513 (822)
27 PRK10049 pgaA outer membrane p 99.7 2E-14 4.3E-19 172.6 38.3 163 614-779 278-464 (765)
28 KOG4318 Bicoid mRNA stability 99.7 1.1E-13 2.3E-18 152.2 35.4 686 58-807 21-810 (1088)
29 KOG4422 Uncharacterized conser 99.7 2.9E-13 6.3E-18 137.0 34.9 364 3-416 87-478 (625)
30 KOG4422 Uncharacterized conser 99.7 1.9E-13 4.1E-18 138.3 32.9 332 129-508 116-469 (625)
31 KOG2076 RNA polymerase III tra 99.7 1E-11 2.2E-16 138.1 47.4 654 41-800 152-890 (895)
32 PRK14574 hmsH outer membrane p 99.6 3.2E-12 6.9E-17 150.2 42.8 438 210-704 44-514 (822)
33 KOG0495 HAT repeat protein [RN 99.6 4E-10 8.6E-15 120.5 50.0 495 276-819 384-892 (913)
34 KOG2076 RNA polymerase III tra 99.6 5.2E-11 1.1E-15 132.6 45.2 343 282-630 153-548 (895)
35 KOG0495 HAT repeat protein [RN 99.5 7.9E-09 1.7E-13 110.8 52.2 457 209-783 415-892 (913)
36 PF13429 TPR_15: Tetratricopep 99.5 2.8E-14 6.1E-19 150.9 10.8 212 587-803 58-275 (280)
37 KOG2003 TPR repeat-containing 99.5 7.8E-12 1.7E-16 127.2 27.5 271 516-793 428-711 (840)
38 KOG1155 Anaphase-promoting com 99.5 3.1E-11 6.7E-16 124.2 30.3 191 607-802 329-533 (559)
39 KOG0547 Translocase of outer m 99.4 1.1E-10 2.4E-15 120.8 29.0 187 611-803 363-564 (606)
40 KOG1126 DNA-binding cell divis 99.4 6.5E-12 1.4E-16 135.5 20.7 162 636-804 418-585 (638)
41 KOG1915 Cell cycle control pro 99.4 4.4E-09 9.5E-14 108.6 38.4 477 316-804 86-624 (677)
42 KOG0985 Vesicle coat protein c 99.4 2.9E-07 6.2E-12 103.4 52.8 567 190-802 503-1246(1666)
43 KOG1126 DNA-binding cell divis 99.4 2.1E-11 4.5E-16 131.7 20.4 271 522-804 334-619 (638)
44 PRK10747 putative protoheme IX 99.4 2E-10 4.4E-15 127.2 26.9 255 483-772 129-391 (398)
45 KOG2003 TPR repeat-containing 99.4 3.6E-10 7.8E-15 115.4 25.6 168 517-724 534-708 (840)
46 KOG1173 Anaphase-promoting com 99.3 2.2E-09 4.8E-14 113.7 31.3 192 607-803 311-516 (611)
47 TIGR02521 type_IV_pilW type IV 99.3 1.9E-10 4.2E-15 118.4 22.2 196 607-804 30-231 (234)
48 TIGR00540 hemY_coli hemY prote 99.3 1.4E-09 3.1E-14 121.2 30.5 289 449-769 96-397 (409)
49 PRK10747 putative protoheme IX 99.3 7.6E-10 1.7E-14 122.6 27.1 273 520-802 97-387 (398)
50 PF13429 TPR_15: Tetratricopep 99.3 8.4E-12 1.8E-16 132.0 10.8 250 513-770 14-276 (280)
51 KOG1155 Anaphase-promoting com 99.3 2.3E-08 5.1E-13 103.4 33.9 128 607-735 397-532 (559)
52 TIGR00540 hemY_coli hemY prote 99.3 2.3E-09 4.9E-14 119.5 28.5 274 520-802 97-396 (409)
53 KOG2047 mRNA splicing factor [ 99.2 1E-06 2.3E-11 94.9 44.7 242 25-279 24-292 (835)
54 KOG1915 Cell cycle control pro 99.2 6E-07 1.3E-11 93.2 40.8 415 212-667 85-535 (677)
55 COG2956 Predicted N-acetylgluc 99.2 9.7E-09 2.1E-13 101.4 26.5 299 450-814 48-356 (389)
56 KOG2047 mRNA splicing factor [ 99.2 6E-07 1.3E-11 96.7 40.3 523 195-765 76-717 (835)
57 KOG0985 Vesicle coat protein c 99.2 1.8E-06 3.9E-11 97.3 44.9 626 101-789 609-1326(1666)
58 PRK11189 lipoprotein NlpI; Pro 99.2 3.5E-09 7.6E-14 112.1 23.0 213 587-806 40-266 (296)
59 KOG1174 Anaphase-promoting com 99.2 8.7E-08 1.9E-12 97.7 31.1 367 405-778 96-507 (564)
60 KOG0547 Translocase of outer m 99.2 4.5E-08 9.7E-13 102.0 28.4 80 238-323 122-203 (606)
61 KOG3785 Uncharacterized conser 99.1 8E-08 1.7E-12 95.8 28.7 311 421-774 166-493 (557)
62 KOG4162 Predicted calmodulin-b 99.1 4.6E-07 9.9E-12 100.1 37.3 432 296-803 316-781 (799)
63 KOG3616 Selective LIM binding 99.1 2E-06 4.3E-11 93.6 41.2 530 110-802 456-1021(1636)
64 PRK12370 invasion protein regu 99.1 7.3E-09 1.6E-13 120.1 24.8 211 587-805 318-535 (553)
65 KOG3616 Selective LIM binding 99.1 2.6E-05 5.7E-10 85.1 48.8 188 212-433 744-935 (1636)
66 PF13041 PPR_2: PPR repeat fam 99.1 1.9E-10 4.2E-15 84.7 6.7 50 637-686 1-50 (50)
67 COG3063 PilF Tfp pilus assembl 99.1 6.4E-09 1.4E-13 98.3 18.2 162 641-807 37-204 (250)
68 KOG1173 Anaphase-promoting com 99.1 1.8E-07 3.9E-12 99.6 30.8 279 436-752 243-532 (611)
69 KOG1840 Kinesin light chain [C 99.1 9.9E-09 2.1E-13 112.8 22.2 228 576-803 202-477 (508)
70 COG3071 HemY Uncharacterized e 99.1 9.3E-08 2E-12 97.8 26.9 277 450-735 97-386 (400)
71 PRK12370 invasion protein regu 99.1 1.1E-08 2.4E-13 118.6 23.5 177 621-804 317-501 (553)
72 TIGR02521 type_IV_pilW type IV 99.1 2E-08 4.3E-13 103.3 23.0 196 539-773 32-234 (234)
73 PF13041 PPR_2: PPR repeat fam 99.1 2.5E-10 5.3E-15 84.1 5.9 50 536-585 1-50 (50)
74 KOG4162 Predicted calmodulin-b 99.1 3.3E-07 7.1E-12 101.2 32.3 396 399-805 316-749 (799)
75 COG2956 Predicted N-acetylgluc 99.0 1.4E-07 3E-12 93.5 24.2 283 346-737 47-345 (389)
76 COG3071 HemY Uncharacterized e 99.0 5.6E-07 1.2E-11 92.2 28.7 283 347-666 97-388 (400)
77 KOG1129 TPR repeat-containing 99.0 2.3E-08 4.9E-13 98.7 17.9 156 616-805 298-458 (478)
78 KOG1127 TPR repeat-containing 99.0 1.2E-05 2.7E-10 91.2 41.3 639 28-788 492-1192(1238)
79 KOG1156 N-terminal acetyltrans 98.9 1.1E-05 2.3E-10 87.8 36.3 218 278-535 17-247 (700)
80 KOG2376 Signal recognition par 98.9 4.7E-06 1E-10 89.5 33.2 363 417-798 90-513 (652)
81 PRK11189 lipoprotein NlpI; Pro 98.9 3.3E-07 7.2E-12 97.1 24.2 225 521-788 40-283 (296)
82 KOG1127 TPR repeat-containing 98.9 2.4E-05 5.2E-10 88.9 38.4 275 524-802 800-1101(1238)
83 KOG1174 Anaphase-promoting com 98.9 9.7E-06 2.1E-10 83.1 30.7 280 537-850 231-519 (564)
84 KOG3785 Uncharacterized conser 98.8 8.5E-06 1.9E-10 81.7 29.3 81 319-403 270-355 (557)
85 KOG1840 Kinesin light chain [C 98.8 3.8E-07 8.2E-12 100.5 21.1 233 507-770 199-478 (508)
86 KOG3617 WD40 and TPR repeat-co 98.8 3.6E-05 7.9E-10 85.3 35.1 241 97-361 725-994 (1416)
87 COG3063 PilF Tfp pilus assembl 98.8 1.5E-06 3.3E-11 82.5 21.1 192 611-804 38-235 (250)
88 KOG0548 Molecular co-chaperone 98.7 1.2E-05 2.6E-10 85.8 27.3 241 512-793 229-477 (539)
89 KOG2376 Signal recognition par 98.7 0.00041 8.8E-09 75.1 38.2 118 238-364 19-140 (652)
90 KOG1129 TPR repeat-containing 98.7 8.2E-07 1.8E-11 87.9 15.6 223 509-737 225-456 (478)
91 PRK15359 type III secretion sy 98.6 4.8E-07 1E-11 84.1 13.5 122 659-787 13-137 (144)
92 PF12569 NARP1: NMDA receptor- 98.6 1.9E-05 4.1E-10 88.5 27.4 278 517-802 14-331 (517)
93 KOG1125 TPR repeat-containing 98.6 1.1E-06 2.3E-11 94.3 16.4 214 585-801 297-523 (579)
94 PLN02789 farnesyltranstransfer 98.6 8.4E-06 1.8E-10 86.1 23.0 203 546-789 45-268 (320)
95 KOG1156 N-terminal acetyltrans 98.6 0.00023 4.9E-09 77.9 33.7 396 384-818 20-486 (700)
96 cd05804 StaR_like StaR_like; a 98.6 4.1E-05 8.9E-10 84.4 29.8 290 511-804 10-335 (355)
97 PRK04841 transcriptional regul 98.6 0.00072 1.6E-08 84.9 44.4 193 612-804 535-759 (903)
98 KOG3617 WD40 and TPR repeat-co 98.6 0.00081 1.7E-08 75.1 37.8 43 439-490 1147-1189(1416)
99 TIGR03302 OM_YfiO outer membra 98.6 3.5E-06 7.5E-11 86.7 19.4 179 607-805 32-232 (235)
100 PF04733 Coatomer_E: Coatomer 98.6 1.4E-06 3.1E-11 90.7 16.4 156 614-776 108-270 (290)
101 KOG0548 Molecular co-chaperone 98.6 5.1E-05 1.1E-09 81.2 27.3 148 645-804 304-454 (539)
102 KOG0624 dsRNA-activated protei 98.6 9.2E-05 2E-09 74.3 27.3 284 515-804 46-369 (504)
103 PF04733 Coatomer_E: Coatomer 98.6 2.7E-06 5.9E-11 88.6 17.7 149 647-804 110-264 (290)
104 PF12569 NARP1: NMDA receptor- 98.6 2.7E-05 5.9E-10 87.3 26.4 66 414-481 12-80 (517)
105 KOG0624 dsRNA-activated protei 98.5 0.00016 3.5E-09 72.6 26.6 311 412-809 44-398 (504)
106 PRK10370 formate-dependent nit 98.4 1E-05 2.2E-10 79.6 17.3 152 615-779 23-181 (198)
107 PRK10370 formate-dependent nit 98.4 9.2E-06 2E-10 79.9 16.8 145 646-805 23-173 (198)
108 KOG1128 Uncharacterized conser 98.4 5.8E-06 1.3E-10 91.1 16.4 218 502-737 393-614 (777)
109 PRK15359 type III secretion sy 98.4 5.2E-06 1.1E-10 77.2 14.0 105 695-804 14-120 (144)
110 PRK15363 pathogenicity island 98.4 3.7E-06 8E-11 76.4 12.4 122 705-849 28-153 (157)
111 PF12854 PPR_1: PPR repeat 98.4 2.8E-07 6.1E-12 60.7 3.7 33 195-227 2-34 (34)
112 KOG4340 Uncharacterized conser 98.4 9E-05 2E-09 72.9 22.0 412 368-803 7-441 (459)
113 cd05804 StaR_like StaR_like; a 98.4 0.00024 5.1E-09 78.4 28.9 264 539-805 7-293 (355)
114 KOG1125 TPR repeat-containing 98.4 1.2E-05 2.7E-10 86.4 17.1 239 517-764 295-564 (579)
115 KOG1914 mRNA cleavage and poly 98.3 0.0048 1E-07 66.3 34.8 176 554-731 347-531 (656)
116 PLN02789 farnesyltranstransfer 98.3 5.5E-05 1.2E-09 80.0 20.1 182 615-801 44-246 (320)
117 KOG1070 rRNA processing protei 98.3 8.2E-05 1.8E-09 87.6 22.6 197 607-807 1457-1665(1710)
118 PRK15179 Vi polysaccharide bio 98.3 4.1E-05 8.9E-10 89.2 20.5 164 610-778 51-224 (694)
119 PF12854 PPR_1: PPR repeat 98.3 7.7E-07 1.7E-11 58.6 3.5 33 298-330 2-34 (34)
120 COG5010 TadD Flp pilus assembl 98.3 5.7E-05 1.2E-09 73.8 17.4 147 616-767 74-227 (257)
121 COG4783 Putative Zn-dependent 98.2 0.00022 4.7E-09 75.8 22.0 146 639-806 306-455 (484)
122 TIGR02552 LcrH_SycD type III s 98.2 1.8E-05 3.9E-10 73.2 12.8 99 706-804 12-113 (135)
123 PRK15179 Vi polysaccharide bio 98.2 7.7E-05 1.7E-09 87.0 20.2 142 604-750 82-230 (694)
124 PRK04841 transcriptional regul 98.2 0.011 2.4E-07 74.3 40.9 365 207-603 348-761 (903)
125 KOG1128 Uncharacterized conser 98.2 3.5E-05 7.5E-10 85.2 15.7 237 401-719 393-632 (777)
126 TIGR03302 OM_YfiO outer membra 98.2 7E-05 1.5E-09 76.9 17.3 181 572-773 32-234 (235)
127 COG5010 TadD Flp pilus assembl 98.2 7.2E-05 1.6E-09 73.1 15.9 124 607-735 99-227 (257)
128 PRK14720 transcript cleavage f 98.2 0.00015 3.2E-09 85.3 20.9 232 537-808 30-287 (906)
129 COG4783 Putative Zn-dependent 98.1 0.00021 4.6E-09 75.9 19.1 175 622-803 251-435 (484)
130 KOG4340 Uncharacterized conser 98.1 0.00021 4.5E-09 70.4 17.2 270 508-800 45-334 (459)
131 TIGR02552 LcrH_SycD type III s 98.0 7.9E-05 1.7E-09 68.9 13.0 114 660-778 4-121 (135)
132 KOG1070 rRNA processing protei 98.0 0.00073 1.6E-08 80.1 22.7 199 573-772 1458-1664(1710)
133 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.0002 4.3E-09 77.3 15.6 126 609-739 170-297 (395)
134 KOG3060 Uncharacterized conser 97.9 0.00091 2E-08 64.9 17.9 157 617-779 61-228 (289)
135 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00019 4.2E-09 77.3 14.6 122 677-803 172-295 (395)
136 TIGR00756 PPR pentatricopeptid 97.9 1.8E-05 3.9E-10 53.0 4.4 35 539-573 1-35 (35)
137 TIGR00756 PPR pentatricopeptid 97.9 1.9E-05 4E-10 53.0 4.2 34 640-673 1-34 (35)
138 KOG3081 Vesicle coat complex C 97.8 0.0091 2E-07 58.7 21.6 156 614-776 114-276 (299)
139 PF09976 TPR_21: Tetratricopep 97.8 0.0011 2.5E-08 61.8 15.5 123 642-768 15-144 (145)
140 KOG0553 TPR repeat-containing 97.7 0.00014 3.1E-09 72.5 9.0 98 682-782 89-189 (304)
141 PF09976 TPR_21: Tetratricopep 97.7 0.00083 1.8E-08 62.7 14.0 124 676-801 14-143 (145)
142 PLN03088 SGT1, suppressor of 97.7 0.00028 6.1E-09 76.7 12.3 101 681-784 9-112 (356)
143 PF13812 PPR_3: Pentatricopept 97.7 5.8E-05 1.3E-09 50.1 4.3 33 640-672 2-34 (34)
144 KOG2053 Mitochondrial inherita 97.7 0.2 4.2E-06 57.9 40.2 124 109-236 20-150 (932)
145 PF13812 PPR_3: Pentatricopept 97.7 7E-05 1.5E-09 49.7 4.2 34 538-571 1-34 (34)
146 PRK02603 photosystem I assembl 97.6 0.001 2.2E-08 64.3 13.8 131 638-792 34-167 (172)
147 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.00064 1.4E-08 61.0 11.6 102 678-779 6-113 (119)
148 KOG3060 Uncharacterized conser 97.6 0.0026 5.6E-08 61.9 15.6 170 621-795 25-207 (289)
149 KOG0553 TPR repeat-containing 97.6 0.00042 9.2E-09 69.2 10.5 97 646-747 88-187 (304)
150 PRK15331 chaperone protein Sic 97.6 0.0011 2.4E-08 60.9 12.0 101 704-804 30-133 (165)
151 PRK10153 DNA-binding transcrip 97.6 0.0018 3.9E-08 73.4 16.6 47 635-683 333-385 (517)
152 cd00189 TPR Tetratricopeptide 97.6 0.00042 9.1E-09 58.9 9.1 91 713-803 3-95 (100)
153 CHL00033 ycf3 photosystem I as 97.6 0.0032 6.9E-08 60.6 15.9 110 639-776 35-154 (168)
154 PLN03088 SGT1, suppressor of 97.6 0.00075 1.6E-08 73.4 12.8 103 645-752 8-113 (356)
155 TIGR02795 tol_pal_ybgF tol-pal 97.5 0.00083 1.8E-08 60.3 10.9 95 711-805 3-105 (119)
156 PF13414 TPR_11: TPR repeat; P 97.5 0.00019 4.1E-09 57.1 5.6 64 741-804 2-66 (69)
157 KOG1914 mRNA cleavage and poly 97.5 0.22 4.8E-06 54.1 35.4 160 640-802 367-536 (656)
158 PRK14720 transcript cleavage f 97.5 0.0052 1.1E-07 72.7 19.3 209 568-808 25-255 (906)
159 COG4235 Cytochrome c biogenesi 97.4 0.00079 1.7E-08 67.8 9.9 101 707-807 152-258 (287)
160 KOG2053 Mitochondrial inherita 97.4 0.41 8.9E-06 55.4 39.0 124 212-340 21-151 (932)
161 KOG0550 Molecular chaperone (D 97.4 0.0019 4.1E-08 67.1 12.5 160 640-804 169-349 (486)
162 PF01535 PPR: PPR repeat; Int 97.4 0.00017 3.6E-09 46.6 3.4 31 539-569 1-31 (31)
163 PF01535 PPR: PPR repeat; Int 97.4 0.00017 3.6E-09 46.6 3.3 31 640-670 1-31 (31)
164 PRK15363 pathogenicity island 97.4 0.0036 7.8E-08 57.3 12.5 95 636-735 32-128 (157)
165 PF13431 TPR_17: Tetratricopep 97.4 9.9E-05 2.1E-09 48.5 1.8 32 765-796 2-33 (34)
166 PF12895 Apc3: Anaphase-promot 97.4 0.00012 2.5E-09 61.0 2.7 58 743-801 26-83 (84)
167 PF04840 Vps16_C: Vps16, C-ter 97.4 0.22 4.7E-06 52.8 27.7 121 611-751 180-300 (319)
168 PF13432 TPR_16: Tetratricopep 97.3 0.00048 1E-08 53.9 5.9 57 748-804 3-59 (65)
169 KOG3081 Vesicle coat complex C 97.3 0.031 6.7E-07 55.1 19.1 112 615-729 144-260 (299)
170 PF05843 Suf: Suppressor of fo 97.3 0.0065 1.4E-07 63.7 15.6 136 640-778 2-143 (280)
171 COG3898 Uncharacterized membra 97.3 0.32 7E-06 50.7 26.3 265 520-799 97-386 (531)
172 cd00189 TPR Tetratricopeptide 97.3 0.0023 5.1E-08 54.1 10.0 89 642-735 3-93 (100)
173 PRK02603 photosystem I assembl 97.2 0.0031 6.8E-08 60.9 11.6 80 712-791 37-121 (172)
174 CHL00033 ycf3 photosystem I as 97.2 0.0017 3.8E-08 62.4 9.7 91 710-800 35-137 (168)
175 PF14559 TPR_19: Tetratricopep 97.2 0.00065 1.4E-08 53.8 5.3 51 754-804 3-53 (68)
176 PF13432 TPR_16: Tetratricopep 97.2 0.00056 1.2E-08 53.5 4.8 61 716-776 3-65 (65)
177 KOG2796 Uncharacterized conser 97.2 0.021 4.6E-07 55.8 16.1 229 21-257 62-312 (366)
178 PF13371 TPR_9: Tetratricopept 97.1 0.0014 3E-08 52.8 6.3 55 750-804 3-57 (73)
179 PF14938 SNAP: Soluble NSF att 97.1 0.045 9.8E-07 57.6 19.2 147 615-773 101-268 (282)
180 PRK10153 DNA-binding transcrip 97.0 0.014 2.9E-07 66.4 15.7 130 671-804 334-481 (517)
181 PF14559 TPR_19: Tetratricopep 97.0 0.00065 1.4E-08 53.8 3.6 49 686-737 3-52 (68)
182 PF04840 Vps16_C: Vps16, C-ter 97.0 0.61 1.3E-05 49.5 26.4 108 510-633 180-287 (319)
183 COG4700 Uncharacterized protei 96.9 0.018 3.8E-07 53.3 12.2 150 648-802 65-219 (251)
184 PF12688 TPR_5: Tetratrico pep 96.9 0.019 4.2E-07 50.7 12.3 92 644-735 6-100 (120)
185 PF14938 SNAP: Soluble NSF att 96.9 0.045 9.7E-07 57.6 17.6 119 645-778 100-232 (282)
186 PF12895 Apc3: Anaphase-promot 96.9 0.0024 5.2E-08 53.0 6.2 80 652-735 2-83 (84)
187 COG4700 Uncharacterized protei 96.8 0.095 2.1E-06 48.7 16.1 126 638-763 88-214 (251)
188 KOG2041 WD40 repeat protein [G 96.8 1 2.2E-05 50.5 26.6 302 413-770 767-1085(1189)
189 COG3898 Uncharacterized membra 96.8 0.56 1.2E-05 49.0 23.2 247 540-797 84-350 (531)
190 PF13414 TPR_11: TPR repeat; P 96.8 0.0044 9.6E-08 49.1 6.7 63 638-702 2-66 (69)
191 KOG1130 Predicted G-alpha GTPa 96.8 0.0067 1.4E-07 62.8 9.2 128 675-802 196-341 (639)
192 PRK10866 outer membrane biogen 96.7 0.073 1.6E-06 54.3 16.8 173 613-804 37-240 (243)
193 PRK10803 tol-pal system protei 96.7 0.029 6.4E-07 57.6 13.7 65 642-708 146-214 (263)
194 KOG1538 Uncharacterized conser 96.7 0.31 6.7E-06 53.9 21.4 97 614-742 709-806 (1081)
195 PRK10803 tol-pal system protei 96.6 0.017 3.6E-07 59.4 11.3 52 685-736 154-206 (263)
196 KOG2796 Uncharacterized conser 96.6 0.22 4.8E-06 49.0 17.8 175 610-784 138-328 (366)
197 PF13428 TPR_14: Tetratricopep 96.6 0.003 6.5E-08 44.6 4.0 42 743-784 2-43 (44)
198 PF13371 TPR_9: Tetratricopept 96.5 0.0059 1.3E-07 49.0 5.9 65 718-782 3-69 (73)
199 KOG2041 WD40 repeat protein [G 96.5 1.4 3E-05 49.5 25.1 219 215-494 678-900 (1189)
200 KOG0550 Molecular chaperone (D 96.5 0.39 8.4E-06 50.6 19.6 125 647-776 257-406 (486)
201 PF10037 MRP-S27: Mitochondria 96.4 0.019 4.1E-07 62.5 10.4 118 95-213 63-186 (429)
202 PLN03098 LPA1 LOW PSII ACCUMUL 96.4 0.01 2.2E-07 63.8 8.2 64 741-804 74-140 (453)
203 KOG0543 FKBP-type peptidyl-pro 96.4 0.019 4.2E-07 60.3 9.9 128 679-851 213-340 (397)
204 PF13281 DUF4071: Domain of un 96.4 0.29 6.3E-06 52.3 18.8 161 612-775 145-338 (374)
205 PRK11906 transcriptional regul 96.3 0.37 8E-06 52.3 19.3 158 640-800 252-431 (458)
206 PF12688 TPR_5: Tetratrico pep 96.3 0.025 5.5E-07 50.0 8.7 82 718-799 9-98 (120)
207 PF05843 Suf: Suppressor of fo 96.3 0.09 1.9E-06 55.1 14.4 125 575-702 3-135 (280)
208 KOG4555 TPR repeat-containing 96.3 0.019 4.2E-07 49.7 7.4 89 718-806 51-145 (175)
209 PF10037 MRP-S27: Mitochondria 96.2 0.1 2.2E-06 57.0 14.5 121 567-687 60-186 (429)
210 KOG2280 Vacuolar assembly/sort 96.1 3.6 7.7E-05 47.1 28.8 336 367-735 428-795 (829)
211 PLN03098 LPA1 LOW PSII ACCUMUL 96.1 0.64 1.4E-05 50.5 19.4 63 638-702 74-140 (453)
212 COG5107 RNA14 Pre-mRNA 3'-end 96.1 2.6 5.6E-05 45.1 30.1 90 574-664 398-491 (660)
213 PRK10866 outer membrane biogen 96.0 1.2 2.7E-05 45.4 20.8 54 681-734 182-236 (243)
214 PF06239 ECSIT: Evolutionarily 96.0 0.059 1.3E-06 51.9 10.1 97 628-725 34-153 (228)
215 PF13525 YfiO: Outer membrane 95.9 0.24 5.2E-06 49.1 14.9 66 644-709 10-77 (203)
216 KOG1258 mRNA processing protei 95.9 3.8 8.3E-05 45.9 28.2 183 607-792 296-491 (577)
217 PF08579 RPM2: Mitochondrial r 95.9 0.048 1E-06 46.4 7.9 81 439-519 27-116 (120)
218 PF03704 BTAD: Bacterial trans 95.9 0.12 2.6E-06 48.2 11.8 107 683-803 15-123 (146)
219 COG0457 NrfG FOG: TPR repeat [ 95.8 2.3 5E-05 42.7 26.1 193 608-804 59-264 (291)
220 PF08579 RPM2: Mitochondrial r 95.8 0.053 1.1E-06 46.1 8.0 78 236-315 30-116 (120)
221 KOG0543 FKBP-type peptidyl-pro 95.8 0.062 1.3E-06 56.6 10.1 138 645-804 214-354 (397)
222 KOG2280 Vacuolar assembly/sort 95.8 3.5 7.6E-05 47.2 24.0 334 260-630 424-792 (829)
223 PF07079 DUF1347: Protein of u 95.8 3.5 7.7E-05 44.4 34.4 47 650-698 473-519 (549)
224 COG4235 Cytochrome c biogenesi 95.7 0.17 3.7E-06 51.5 12.4 95 638-737 155-254 (287)
225 KOG1538 Uncharacterized conser 95.6 0.95 2.1E-05 50.3 18.4 205 86-358 624-828 (1081)
226 PF07079 DUF1347: Protein of u 95.6 4.2 9.1E-05 43.8 36.8 352 378-748 135-531 (549)
227 PRK11906 transcriptional regul 95.6 0.13 2.9E-06 55.6 11.8 113 689-801 273-397 (458)
228 KOG2114 Vacuolar assembly/sort 95.5 6.8 0.00015 45.6 26.9 118 203-330 337-458 (933)
229 KOG2066 Vacuolar assembly/sort 95.5 4.3 9.2E-05 46.8 23.2 75 407-484 393-467 (846)
230 PF13525 YfiO: Outer membrane 95.3 2 4.3E-05 42.6 18.7 49 680-728 147-196 (203)
231 PF13424 TPR_12: Tetratricopep 95.3 0.062 1.3E-06 43.7 6.6 59 676-734 7-70 (78)
232 KOG2114 Vacuolar assembly/sort 95.2 8.5 0.00018 44.9 28.2 115 104-227 340-458 (933)
233 COG3118 Thioredoxin domain-con 95.1 0.51 1.1E-05 47.8 13.4 120 681-804 141-265 (304)
234 PF06239 ECSIT: Evolutionarily 95.0 0.17 3.6E-06 48.9 9.4 96 527-622 34-152 (228)
235 PF09205 DUF1955: Domain of un 95.0 1.5 3.2E-05 38.6 14.1 141 649-808 12-152 (161)
236 KOG1130 Predicted G-alpha GTPa 95.0 0.13 2.7E-06 53.8 9.0 256 447-702 27-343 (639)
237 PF13424 TPR_12: Tetratricopep 95.0 0.032 6.8E-07 45.4 4.0 26 711-736 6-31 (78)
238 COG4105 ComL DNA uptake lipopr 94.8 2.5 5.5E-05 42.2 17.2 67 645-711 40-108 (254)
239 PF03704 BTAD: Bacterial trans 94.8 0.26 5.6E-06 45.9 10.2 70 641-712 64-138 (146)
240 KOG1920 IkappaB kinase complex 94.6 3 6.4E-05 50.3 19.9 154 621-802 893-1052(1265)
241 COG4785 NlpI Lipoprotein NlpI, 94.6 1.5 3.2E-05 42.2 14.3 179 618-804 75-265 (297)
242 COG0457 NrfG FOG: TPR repeat [ 94.6 5.5 0.00012 39.8 24.5 163 607-774 94-268 (291)
243 KOG4234 TPR repeat-containing 94.5 0.15 3.3E-06 48.0 7.6 86 720-805 105-197 (271)
244 COG1729 Uncharacterized protei 94.5 0.3 6.5E-06 49.1 10.2 95 641-738 144-243 (262)
245 PF04184 ST7: ST7 protein; In 94.5 1.7 3.6E-05 47.5 16.2 103 676-778 261-382 (539)
246 KOG1920 IkappaB kinase complex 94.3 17 0.00037 44.3 25.3 157 521-736 894-1052(1265)
247 PRK15331 chaperone protein Sic 94.2 1.2 2.6E-05 41.4 12.6 91 646-740 44-135 (165)
248 smart00299 CLH Clathrin heavy 94.1 1.7 3.7E-05 40.0 14.1 121 613-753 12-136 (140)
249 PF00515 TPR_1: Tetratricopept 94.1 0.066 1.4E-06 35.1 3.3 33 743-775 2-34 (34)
250 PF12921 ATP13: Mitochondrial 94.1 0.57 1.2E-05 41.9 10.3 49 670-718 48-96 (126)
251 PF07719 TPR_2: Tetratricopept 94.0 0.098 2.1E-06 34.2 4.0 33 743-775 2-34 (34)
252 KOG1941 Acetylcholine receptor 94.0 0.47 1E-05 49.0 10.3 224 548-771 16-275 (518)
253 PF04053 Coatomer_WDAD: Coatom 93.8 0.86 1.9E-05 50.8 13.1 131 649-806 271-403 (443)
254 PF13512 TPR_18: Tetratricopep 93.5 0.99 2.1E-05 40.9 10.5 58 720-777 20-82 (142)
255 KOG3941 Intermediate in Toll s 93.4 0.62 1.3E-05 46.4 9.7 99 627-726 53-174 (406)
256 PF10300 DUF3808: Protein of u 92.9 8.1 0.00018 43.8 19.4 183 643-846 192-399 (468)
257 PRK09687 putative lyase; Provi 92.8 14 0.0003 38.6 26.1 234 506-752 36-277 (280)
258 PF09613 HrpB1_HrpK: Bacterial 92.8 3.5 7.6E-05 38.2 13.1 91 680-773 16-108 (160)
259 PF12921 ATP13: Mitochondrial 92.8 0.86 1.9E-05 40.8 9.1 83 674-756 2-102 (126)
260 PF04184 ST7: ST7 protein; In 92.7 3.4 7.4E-05 45.2 14.9 58 746-803 263-322 (539)
261 COG3118 Thioredoxin domain-con 92.5 8.5 0.00018 39.4 16.4 138 647-790 142-286 (304)
262 PF13512 TPR_18: Tetratricopep 92.4 4.2 9.2E-05 36.9 12.9 115 646-776 17-133 (142)
263 PRK12798 chemotaxis protein; R 92.3 19 0.00041 39.0 21.4 205 621-852 125-347 (421)
264 PF10300 DUF3808: Protein of u 92.1 3 6.6E-05 47.2 14.8 81 622-702 247-333 (468)
265 COG4105 ComL DNA uptake lipopr 92.1 6.8 0.00015 39.3 15.0 67 518-584 45-117 (254)
266 KOG1941 Acetylcholine receptor 92.1 14 0.00031 38.7 17.5 122 579-700 128-272 (518)
267 smart00299 CLH Clathrin heavy 92.0 4.6 0.0001 37.1 13.6 85 169-257 11-95 (140)
268 COG5107 RNA14 Pre-mRNA 3'-end 92.0 21 0.00045 38.7 30.8 143 638-784 396-544 (660)
269 KOG4648 Uncharacterized conser 91.9 0.47 1E-05 48.5 6.9 95 680-777 103-200 (536)
270 KOG4555 TPR repeat-containing 91.8 2.2 4.8E-05 37.4 9.8 56 648-705 52-108 (175)
271 KOG2066 Vacuolar assembly/sort 91.8 30 0.00064 40.3 21.2 105 238-383 363-467 (846)
272 PF13281 DUF4071: Domain of un 91.6 13 0.00028 40.1 17.7 72 512-583 146-227 (374)
273 COG1729 Uncharacterized protei 91.5 2.1 4.7E-05 43.1 11.1 101 677-778 145-251 (262)
274 PF02259 FAT: FAT domain; Int 91.1 21 0.00045 38.9 20.0 150 637-788 144-304 (352)
275 PRK11619 lytic murein transgly 91.0 40 0.00086 40.0 30.3 114 653-769 255-373 (644)
276 PF00637 Clathrin: Region in C 90.8 0.16 3.4E-06 47.2 2.4 85 170-257 12-96 (143)
277 KOG1585 Protein required for f 90.8 16 0.00036 36.1 15.6 26 540-565 33-58 (308)
278 KOG1464 COP9 signalosome, subu 90.2 20 0.00043 35.9 15.9 229 520-755 40-317 (440)
279 KOG4648 Uncharacterized conser 90.1 0.74 1.6E-05 47.1 6.4 93 645-742 103-198 (536)
280 PF13428 TPR_14: Tetratricopep 90.0 0.95 2.1E-05 31.7 5.3 30 641-672 3-32 (44)
281 KOG3941 Intermediate in Toll s 89.9 1.9 4.1E-05 43.2 8.8 99 526-624 53-174 (406)
282 PF04053 Coatomer_WDAD: Coatom 89.8 7.1 0.00015 43.7 14.5 102 616-735 326-427 (443)
283 PF13181 TPR_8: Tetratricopept 89.3 0.48 1E-05 30.8 3.1 31 744-774 3-33 (34)
284 KOG2610 Uncharacterized conser 88.9 9.3 0.0002 39.5 13.0 153 621-778 116-285 (491)
285 PF00637 Clathrin: Region in C 88.8 0.15 3.2E-06 47.4 0.5 85 273-360 12-96 (143)
286 KOG4234 TPR repeat-containing 88.7 4.7 0.0001 38.4 10.0 56 646-702 102-162 (271)
287 PF14853 Fis1_TPR_C: Fis1 C-te 88.7 1.5 3.2E-05 32.2 5.4 34 747-780 6-39 (53)
288 PF06552 TOM20_plant: Plant sp 88.4 3.3 7.3E-05 39.0 8.9 83 690-807 51-138 (186)
289 PF08631 SPO22: Meiosis protei 88.3 36 0.00078 35.6 22.6 19 751-769 255-273 (278)
290 COG2976 Uncharacterized protei 88.1 23 0.0005 34.0 14.1 129 642-776 57-193 (207)
291 PF00515 TPR_1: Tetratricopept 87.3 1.3 2.8E-05 28.8 4.2 31 641-673 3-33 (34)
292 COG4785 NlpI Lipoprotein NlpI, 86.8 5.1 0.00011 38.7 9.1 100 686-791 77-179 (297)
293 PF09613 HrpB1_HrpK: Bacterial 86.5 2.2 4.7E-05 39.5 6.5 54 753-806 21-74 (160)
294 COG3629 DnrI DNA-binding trans 86.3 6.6 0.00014 40.4 10.5 71 641-713 155-230 (280)
295 PF13176 TPR_7: Tetratricopept 86.0 1.6 3.5E-05 28.9 4.2 24 642-665 2-25 (36)
296 TIGR02561 HrpB1_HrpK type III 85.9 16 0.00034 33.4 11.3 83 685-770 21-105 (153)
297 TIGR02561 HrpB1_HrpK type III 85.5 3.3 7.1E-05 37.6 6.9 53 754-806 22-74 (153)
298 PF06552 TOM20_plant: Plant sp 85.5 6.8 0.00015 37.0 9.2 33 759-791 52-84 (186)
299 KOG1585 Protein required for f 85.4 16 0.00034 36.2 11.8 86 28-123 31-116 (308)
300 KOG2610 Uncharacterized conser 85.4 7.7 0.00017 40.1 10.2 159 651-812 115-283 (491)
301 PF13170 DUF4003: Protein of u 85.3 18 0.00038 38.1 13.5 90 625-717 120-224 (297)
302 PF13176 TPR_7: Tetratricopept 85.1 1.1 2.5E-05 29.7 3.1 24 745-768 2-25 (36)
303 PRK09687 putative lyase; Provi 84.8 54 0.0012 34.3 25.1 75 606-685 204-278 (280)
304 PF13431 TPR_17: Tetratricopep 84.7 1.1 2.3E-05 29.4 2.7 20 710-729 13-32 (34)
305 KOG4279 Serine/threonine prote 84.6 20 0.00043 41.3 13.7 183 540-774 203-398 (1226)
306 PF07035 Mic1: Colon cancer-as 83.7 39 0.00085 31.9 13.5 39 289-327 15-53 (167)
307 PRK10941 hypothetical protein; 83.6 6.9 0.00015 40.3 9.4 82 744-848 183-264 (269)
308 COG1747 Uncharacterized N-term 83.5 79 0.0017 35.1 19.7 157 539-702 67-233 (711)
309 PF07035 Mic1: Colon cancer-as 83.2 25 0.00055 33.1 12.1 134 251-399 14-148 (167)
310 COG3629 DnrI DNA-binding trans 83.1 4.9 0.00011 41.3 8.0 61 744-804 155-215 (280)
311 PRK13800 putative oxidoreducta 82.8 1.4E+02 0.003 37.4 24.1 139 607-757 697-836 (897)
312 PF09205 DUF1955: Domain of un 82.5 35 0.00077 30.4 12.3 80 621-702 69-148 (161)
313 PF07719 TPR_2: Tetratricopept 82.5 2.9 6.3E-05 26.9 4.2 27 641-667 3-29 (34)
314 COG4649 Uncharacterized protei 82.4 44 0.00095 31.4 16.0 121 649-770 68-195 (221)
315 PF10345 Cohesin_load: Cohesin 81.5 1.2E+02 0.0027 35.9 30.5 76 287-363 40-128 (608)
316 COG4649 Uncharacterized protei 81.4 48 0.001 31.2 14.1 121 548-703 68-196 (221)
317 PF10602 RPN7: 26S proteasome 81.2 21 0.00046 34.3 11.3 59 642-700 39-99 (177)
318 KOG1308 Hsp70-interacting prot 80.9 0.93 2E-05 46.8 1.9 87 724-810 128-216 (377)
319 KOG0890 Protein kinase of the 80.4 2.3E+02 0.0049 38.3 32.4 129 408-544 1422-1552(2382)
320 PF10602 RPN7: 26S proteasome 80.3 11 0.00024 36.2 9.0 92 609-700 37-139 (177)
321 KOG0890 Protein kinase of the 79.7 2.4E+02 0.0051 38.1 28.0 61 742-804 1670-1730(2382)
322 COG4455 ImpE Protein of avirul 79.6 36 0.00078 33.3 11.7 124 641-776 3-139 (273)
323 KOG0403 Neoplastic transformat 79.3 1E+02 0.0022 33.6 17.6 58 511-568 513-573 (645)
324 PF04097 Nic96: Nup93/Nic96; 79.3 1.4E+02 0.0031 35.3 26.8 85 445-534 266-354 (613)
325 KOG1586 Protein required for f 78.6 68 0.0015 31.9 13.3 62 715-776 118-188 (288)
326 PF02259 FAT: FAT domain; Int 78.1 74 0.0016 34.5 16.2 65 740-804 144-212 (352)
327 PF07721 TPR_4: Tetratricopept 78.0 3 6.6E-05 25.2 2.8 24 777-800 2-25 (26)
328 PF14853 Fis1_TPR_C: Fis1 C-te 77.2 13 0.00028 27.3 6.4 49 779-853 4-52 (53)
329 TIGR02508 type_III_yscG type I 76.9 30 0.00065 29.1 8.9 60 616-678 47-106 (115)
330 KOG4570 Uncharacterized conser 76.7 22 0.00047 36.6 9.8 97 603-703 59-164 (418)
331 smart00028 TPR Tetratricopepti 76.6 4.4 9.5E-05 25.0 3.7 31 744-774 3-33 (34)
332 PF13170 DUF4003: Protein of u 75.9 70 0.0015 33.7 14.0 126 555-682 79-225 (297)
333 KOG0376 Serine-threonine phosp 75.5 5.6 0.00012 43.4 5.8 87 718-804 12-100 (476)
334 KOG3364 Membrane protein invol 74.5 26 0.00056 31.4 8.5 71 707-777 29-106 (149)
335 PF13374 TPR_10: Tetratricopep 74.2 7.4 0.00016 26.4 4.5 27 641-667 4-30 (42)
336 PF11207 DUF2989: Protein of u 74.1 14 0.00031 35.7 7.5 76 720-796 117-198 (203)
337 PF13181 TPR_8: Tetratricopept 73.8 5 0.00011 25.8 3.3 27 641-667 3-29 (34)
338 KOG0276 Vesicle coat complex C 72.9 17 0.00037 40.8 8.7 99 211-328 648-746 (794)
339 PF13374 TPR_10: Tetratricopep 72.8 5.1 0.00011 27.3 3.4 28 777-804 3-30 (42)
340 KOG1586 Protein required for f 72.1 1.1E+02 0.0024 30.5 15.8 99 680-778 119-231 (288)
341 KOG1550 Extracellular protein 71.5 96 0.0021 36.2 15.3 153 650-809 260-430 (552)
342 PF10579 Rapsyn_N: Rapsyn N-te 70.9 8.8 0.00019 30.6 4.4 48 686-733 18-66 (80)
343 KOG0545 Aryl-hydrocarbon recep 70.6 40 0.00086 33.5 9.6 52 753-804 241-292 (329)
344 COG2909 MalT ATP-dependent tra 69.6 2.6E+02 0.0056 33.8 18.9 262 546-816 355-658 (894)
345 PRK15180 Vi polysaccharide bio 68.8 30 0.00065 37.7 9.2 119 652-774 302-423 (831)
346 PRK11619 lytic murein transgly 68.7 2.6E+02 0.0055 33.4 35.8 166 37-227 42-208 (644)
347 COG3947 Response regulator con 68.5 1.5E+02 0.0032 30.6 15.0 57 748-804 285-341 (361)
348 PF13929 mRNA_stabil: mRNA sta 68.4 87 0.0019 32.4 12.0 53 404-456 200-257 (292)
349 PF11207 DUF2989: Protein of u 67.7 41 0.00089 32.7 9.1 78 651-730 119-198 (203)
350 PF13174 TPR_6: Tetratricopept 67.6 5.2 0.00011 25.4 2.3 27 778-804 2-28 (33)
351 KOG2063 Vacuolar assembly/sort 67.1 3E+02 0.0066 33.6 25.3 179 540-736 506-710 (877)
352 PF13174 TPR_6: Tetratricopept 67.1 7.8 0.00017 24.6 3.1 28 747-774 5-32 (33)
353 KOG4570 Uncharacterized conser 66.5 35 0.00076 35.2 8.7 102 92-195 58-165 (418)
354 PF08631 SPO22: Meiosis protei 66.4 1.7E+02 0.0037 30.5 22.1 24 642-666 250-273 (278)
355 KOG4642 Chaperone-dependent E3 65.8 16 0.00035 36.1 6.0 81 724-804 24-106 (284)
356 cd00923 Cyt_c_Oxidase_Va Cytoc 65.5 27 0.00058 29.2 6.3 58 147-207 25-83 (103)
357 KOG0551 Hsp90 co-chaperone CNS 64.5 55 0.0012 34.2 9.7 89 712-800 83-177 (390)
358 PF07721 TPR_4: Tetratricopept 64.2 12 0.00025 22.6 3.2 21 714-734 5-25 (26)
359 TIGR02508 type_III_yscG type I 63.2 53 0.0012 27.7 7.6 55 201-257 40-94 (115)
360 KOG1258 mRNA processing protei 62.9 2.8E+02 0.0061 31.8 26.8 130 229-363 43-180 (577)
361 KOG0276 Vesicle coat complex C 62.9 69 0.0015 36.3 10.7 106 677-806 617-722 (794)
362 PF04910 Tcf25: Transcriptiona 61.6 1.1E+02 0.0024 33.3 12.4 97 673-773 99-224 (360)
363 PRK10941 hypothetical protein; 60.9 40 0.00086 34.9 8.3 66 715-780 186-253 (269)
364 KOG4507 Uncharacterized conser 60.6 25 0.00055 39.3 7.0 70 716-785 648-719 (886)
365 PF02284 COX5A: Cytochrome c o 60.0 75 0.0016 27.0 8.0 60 657-718 28-87 (108)
366 cd00923 Cyt_c_Oxidase_Va Cytoc 59.7 74 0.0016 26.7 7.8 63 654-718 22-84 (103)
367 PF14561 TPR_20: Tetratricopep 59.6 15 0.00033 30.6 4.2 42 762-803 8-49 (90)
368 PF09670 Cas_Cas02710: CRISPR- 59.6 1.1E+02 0.0024 33.6 12.1 122 649-771 141-270 (379)
369 PF07163 Pex26: Pex26 protein; 58.3 1E+02 0.0022 31.6 10.2 90 646-736 90-184 (309)
370 KOG0403 Neoplastic transformat 58.0 2.9E+02 0.0063 30.3 19.9 72 409-484 512-586 (645)
371 PF13762 MNE1: Mitochondrial s 57.1 1.6E+02 0.0035 27.1 11.1 80 203-284 42-131 (145)
372 COG1747 Uncharacterized N-term 56.8 3.3E+02 0.0071 30.6 19.6 163 571-738 64-233 (711)
373 KOG3364 Membrane protein invol 56.6 67 0.0015 28.9 7.6 69 671-741 29-103 (149)
374 PF02284 COX5A: Cytochrome c o 55.5 51 0.0011 27.9 6.4 43 738-780 41-83 (108)
375 PF09477 Type_III_YscG: Bacter 55.3 1.1E+02 0.0023 26.4 8.2 52 616-669 48-99 (116)
376 KOG2300 Uncharacterized conser 55.2 3.4E+02 0.0074 30.3 20.0 207 625-853 299-542 (629)
377 KOG1464 COP9 signalosome, subu 54.5 73 0.0016 32.1 8.4 61 744-804 107-173 (440)
378 PF13934 ELYS: Nuclear pore co 54.4 2E+02 0.0044 28.9 12.0 106 642-756 79-186 (226)
379 KOG4642 Chaperone-dependent E3 54.3 1.4E+02 0.0029 30.0 10.0 81 618-700 20-104 (284)
380 PF07720 TPR_3: Tetratricopept 53.3 26 0.00056 23.3 3.6 32 744-775 3-36 (36)
381 KOG3807 Predicted membrane pro 52.7 1.7E+02 0.0038 30.5 10.9 115 645-780 281-400 (556)
382 smart00028 TPR Tetratricopepti 52.0 24 0.00052 21.3 3.5 26 642-667 4-29 (34)
383 PRK13800 putative oxidoreducta 51.5 5.9E+02 0.013 32.0 24.6 254 427-702 625-880 (897)
384 PRK14015 pepN aminopeptidase N 50.6 3.9E+02 0.0085 33.2 15.7 150 645-798 688-846 (875)
385 KOG2297 Predicted translation 50.6 3.1E+02 0.0068 28.5 13.7 67 302-381 164-233 (412)
386 TIGR02414 pepN_proteo aminopep 49.9 4E+02 0.0086 33.1 15.6 151 643-797 676-835 (863)
387 COG4976 Predicted methyltransf 49.2 26 0.00056 34.5 4.3 58 719-776 4-63 (287)
388 KOG3824 Huntingtin interacting 48.4 23 0.00051 36.2 4.1 60 722-781 128-189 (472)
389 PF11768 DUF3312: Protein of u 47.8 1.9E+02 0.0042 32.8 11.3 24 612-635 412-435 (545)
390 PF09986 DUF2225: Uncharacteri 47.2 91 0.002 31.0 8.1 62 743-804 119-193 (214)
391 PF07575 Nucleopor_Nup85: Nup8 46.8 1.4E+02 0.0031 35.0 11.1 32 550-581 507-538 (566)
392 PRK15180 Vi polysaccharide bio 46.8 1.3E+02 0.0028 33.1 9.3 140 686-829 301-442 (831)
393 KOG3824 Huntingtin interacting 46.1 45 0.00098 34.2 5.6 78 752-841 126-203 (472)
394 KOG2471 TPR repeat-containing 46.0 4.1E+02 0.0088 29.7 12.9 103 616-720 248-379 (696)
395 KOG0292 Vesicle coat complex C 45.2 23 0.00049 41.7 3.9 94 680-797 626-719 (1202)
396 cd00280 TRFH Telomeric Repeat 45.1 2.9E+02 0.0063 26.5 11.7 38 747-785 116-153 (200)
397 KOG0551 Hsp90 co-chaperone CNS 44.1 3.3E+02 0.0073 28.8 11.4 90 645-737 87-180 (390)
398 PF15469 Sec5: Exocyst complex 44.1 2.7E+02 0.0059 26.8 10.9 85 679-779 91-176 (182)
399 KOG1550 Extracellular protein 43.7 5.9E+02 0.013 29.8 20.1 145 654-804 379-537 (552)
400 PF08424 NRDE-2: NRDE-2, neces 43.6 4.4E+02 0.0095 28.2 14.6 113 655-772 47-184 (321)
401 PF04097 Nic96: Nup93/Nic96; 43.2 6.4E+02 0.014 30.0 17.5 39 513-551 117-158 (613)
402 PF10345 Cohesin_load: Cohesin 42.8 6.4E+02 0.014 29.9 36.1 44 519-562 373-428 (608)
403 PF00244 14-3-3: 14-3-3 protei 42.2 3.1E+02 0.0067 27.8 11.2 185 645-844 7-223 (236)
404 COG4941 Predicted RNA polymera 42.0 4.5E+02 0.0098 27.9 12.3 131 636-779 261-402 (415)
405 PF14561 TPR_20: Tetratricopep 41.8 1.8E+02 0.0038 24.3 7.8 62 741-802 21-85 (90)
406 PRK13342 recombination factor 41.7 5E+02 0.011 29.0 14.0 47 540-586 229-278 (413)
407 TIGR03504 FimV_Cterm FimV C-te 40.9 59 0.0013 22.8 4.0 24 645-668 5-28 (44)
408 smart00386 HAT HAT (Half-A-TPR 40.8 40 0.00086 20.9 3.1 28 756-783 1-28 (33)
409 TIGR01503 MthylAspMut_E methyl 40.7 1.4E+02 0.0031 33.0 8.7 122 588-716 69-217 (480)
410 COG5159 RPN6 26S proteasome re 40.7 4.3E+02 0.0093 27.3 13.5 50 647-696 11-67 (421)
411 PF12968 DUF3856: Domain of Un 40.0 2.6E+02 0.0057 24.6 10.3 92 686-802 21-126 (144)
412 PF09477 Type_III_YscG: Bacter 40.0 2.2E+02 0.0048 24.5 7.8 75 180-257 21-95 (116)
413 TIGR03504 FimV_Cterm FimV C-te 38.9 52 0.0011 23.1 3.5 25 544-568 5-29 (44)
414 KOG2034 Vacuolar sorting prote 38.7 8E+02 0.017 29.8 19.1 50 510-564 507-556 (911)
415 COG2976 Uncharacterized protei 38.2 3.9E+02 0.0084 26.0 12.8 85 616-702 97-187 (207)
416 PHA02875 ankyrin repeat protei 38.0 5E+02 0.011 28.8 13.5 17 312-328 141-157 (413)
417 KOG2063 Vacuolar assembly/sort 37.5 8.8E+02 0.019 29.9 17.5 138 216-381 494-636 (877)
418 PF10579 Rapsyn_N: Rapsyn N-te 37.0 1E+02 0.0022 24.9 5.1 46 651-696 18-65 (80)
419 PF14689 SPOB_a: Sensor_kinase 37.0 53 0.0011 25.1 3.6 29 673-701 22-50 (62)
420 KOG0686 COP9 signalosome, subu 36.7 5.3E+02 0.011 28.2 11.8 58 610-667 152-215 (466)
421 PF11846 DUF3366: Domain of un 36.6 1.1E+02 0.0024 29.8 7.0 31 671-701 141-171 (193)
422 PF14689 SPOB_a: Sensor_kinase 36.4 82 0.0018 24.0 4.6 43 625-667 7-51 (62)
423 COG3947 Response regulator con 36.1 5.2E+02 0.011 26.9 15.4 58 642-701 282-340 (361)
424 PF12862 Apc5: Anaphase-promot 35.5 89 0.0019 26.2 5.2 49 754-802 10-67 (94)
425 PF15161 Neuropep_like: Neurop 35.5 15 0.00033 26.5 0.5 18 900-918 11-28 (65)
426 PF04910 Tcf25: Transcriptiona 35.4 2.8E+02 0.006 30.3 10.3 31 671-701 36-67 (360)
427 KOG0991 Replication factor C, 34.7 4.9E+02 0.011 26.1 10.5 47 627-674 227-273 (333)
428 TIGR02710 CRISPR-associated pr 34.2 4.6E+02 0.0099 28.7 11.4 29 646-674 137-165 (380)
429 COG0790 FOG: TPR repeat, SEL1 33.7 5.7E+02 0.012 26.6 16.9 80 587-669 55-143 (292)
430 TIGR02270 conserved hypothetic 33.2 7.2E+02 0.016 27.7 22.3 46 96-141 98-143 (410)
431 COG4455 ImpE Protein of avirul 33.0 5E+02 0.011 25.8 12.7 73 676-751 3-81 (273)
432 KOG2659 LisH motif-containing 32.9 5.1E+02 0.011 25.9 10.9 94 641-737 28-130 (228)
433 PF13934 ELYS: Nuclear pore co 32.7 4.8E+02 0.01 26.2 10.8 111 621-740 91-202 (226)
434 PRK09169 hypothetical protein; 32.6 1.5E+03 0.033 31.2 45.2 396 369-764 244-730 (2316)
435 PF13929 mRNA_stabil: mRNA sta 32.5 6E+02 0.013 26.5 18.0 89 264-352 160-256 (292)
436 PRK11509 hydrogenase-1 operon 32.3 1.2E+02 0.0026 27.4 5.6 70 815-901 30-100 (132)
437 COG2912 Uncharacterized conser 31.7 3E+02 0.0065 28.3 8.9 56 746-801 185-240 (269)
438 PF10366 Vps39_1: Vacuolar sor 31.7 1.9E+02 0.0041 25.1 6.7 38 215-257 28-65 (108)
439 PF11846 DUF3366: Domain of un 31.3 1.5E+02 0.0033 28.9 6.9 32 636-667 141-172 (193)
440 PF11663 Toxin_YhaV: Toxin wit 31.2 59 0.0013 29.2 3.4 32 550-583 107-138 (140)
441 PF10366 Vps39_1: Vacuolar sor 30.8 2.4E+02 0.0052 24.5 7.1 28 438-465 40-67 (108)
442 PF04190 DUF410: Protein of un 30.5 6.2E+02 0.013 26.1 18.5 83 606-703 88-170 (260)
443 KOG1811 Predicted Zn2+-binding 30.3 8.8E+02 0.019 27.8 13.5 158 709-883 555-719 (1141)
444 cd08819 CARD_MDA5_2 Caspase ac 30.1 2.4E+02 0.0052 23.3 6.4 39 620-659 48-86 (88)
445 PF13762 MNE1: Mitochondrial s 29.2 4.6E+02 0.01 24.2 10.8 50 638-687 78-128 (145)
446 PF07064 RIC1: RIC1; InterPro 29.0 6.5E+02 0.014 25.9 13.1 86 206-298 159-250 (258)
447 PF08225 Antimicrobial19: Pseu 28.8 33 0.00072 19.2 0.9 12 906-917 10-21 (23)
448 KOG2758 Translation initiation 28.7 7.1E+02 0.015 26.2 14.0 163 596-771 23-196 (432)
449 KOG2581 26S proteasome regulat 28.7 8.1E+02 0.018 26.9 13.3 94 681-774 176-279 (493)
450 KOG0545 Aryl-hydrocarbon recep 28.3 6.4E+02 0.014 25.5 11.1 58 717-774 237-296 (329)
451 PF14863 Alkyl_sulf_dimr: Alky 28.3 1.4E+02 0.0031 27.3 5.6 70 727-799 58-127 (141)
452 PF07163 Pex26: Pex26 protein; 27.8 2.5E+02 0.0055 28.9 7.5 86 136-223 90-181 (309)
453 KOG0376 Serine-threonine phosp 27.8 1.6E+02 0.0035 32.7 6.6 13 939-951 359-371 (476)
454 cd08819 CARD_MDA5_2 Caspase ac 27.7 2.7E+02 0.0059 23.0 6.3 38 315-353 48-85 (88)
455 PRK10564 maltose regulon perip 27.5 1.1E+02 0.0023 31.9 5.1 42 640-681 258-299 (303)
456 PF12862 Apc5: Anaphase-promot 27.3 3E+02 0.0065 22.9 7.1 53 650-702 9-69 (94)
457 PF04190 DUF410: Protein of un 27.3 7E+02 0.015 25.7 16.7 159 620-805 2-170 (260)
458 KOG0292 Vesicle coat complex C 27.1 4.7E+02 0.01 31.6 10.3 47 732-778 1072-1120(1202)
459 PF06957 COPI_C: Coatomer (COP 27.1 1.3E+02 0.0028 33.3 5.9 34 742-775 300-333 (422)
460 PF08311 Mad3_BUB1_I: Mad3/BUB 26.6 4.7E+02 0.01 23.4 9.6 80 652-735 39-124 (126)
461 KOG4507 Uncharacterized conser 26.5 3.4E+02 0.0074 31.0 8.8 82 620-702 619-704 (886)
462 cd02679 MIT_spastin MIT: domai 26.3 35 0.00075 27.6 1.1 19 786-804 49-67 (79)
463 KOG2471 TPR repeat-containing 26.2 9.1E+02 0.02 27.2 11.7 61 749-812 213-273 (696)
464 PF08091 Toxin_21: Spider inse 25.6 25 0.00054 23.0 0.1 9 940-948 18-26 (39)
465 PF09670 Cas_Cas02710: CRISPR- 24.7 4.9E+02 0.011 28.7 10.0 55 682-738 139-197 (379)
466 PF12926 MOZART2: Mitotic-spin 24.4 3.1E+02 0.0068 22.6 6.0 42 186-227 29-70 (88)
467 PF11848 DUF3368: Domain of un 24.4 2.2E+02 0.0048 20.3 4.8 34 548-581 12-45 (48)
468 PF04090 RNA_pol_I_TF: RNA pol 24.0 6.9E+02 0.015 24.5 11.4 27 641-667 43-69 (199)
469 PF11838 ERAP1_C: ERAP1-like C 24.0 8.8E+02 0.019 25.6 17.1 83 689-771 145-230 (324)
470 PF11817 Foie-gras_1: Foie gra 23.8 2.5E+02 0.0053 28.7 7.1 18 683-700 187-204 (247)
471 KOG4077 Cytochrome c oxidase, 23.7 4.7E+02 0.01 23.4 7.3 59 657-717 67-125 (149)
472 KOG2168 Cullins [Cell cycle co 23.3 1.4E+03 0.03 27.8 21.3 42 308-349 330-374 (835)
473 smart00638 LPD_N Lipoprotein N 23.1 1.3E+03 0.027 27.2 21.5 270 285-583 292-573 (574)
474 PF08424 NRDE-2: NRDE-2, neces 22.9 9.5E+02 0.021 25.6 15.5 116 690-808 47-186 (321)
475 PF11768 DUF3312: Protein of u 22.8 4.7E+02 0.01 29.9 9.2 110 511-640 412-526 (545)
476 PF04090 RNA_pol_I_TF: RNA pol 22.8 3.8E+02 0.0083 26.2 7.6 19 821-839 121-139 (199)
477 PF09986 DUF2225: Uncharacteri 22.6 2.5E+02 0.0054 28.0 6.6 54 655-708 141-199 (214)
478 PRK10564 maltose regulon perip 22.5 1.3E+02 0.0028 31.4 4.6 39 541-579 260-298 (303)
479 PF11838 ERAP1_C: ERAP1-like C 22.1 9.5E+02 0.021 25.4 16.9 61 607-667 168-229 (324)
480 PRK13342 recombination factor 22.1 1.1E+03 0.024 26.2 17.0 48 642-689 230-280 (413)
481 KOG4567 GTPase-activating prot 22.0 9.4E+02 0.02 25.3 10.3 94 659-759 263-366 (370)
482 KOG1498 26S proteasome regulat 21.9 1.1E+03 0.023 25.9 14.2 113 715-827 136-263 (439)
483 COG5431 Uncharacterized metal- 21.4 45 0.00097 27.9 0.9 12 933-944 46-57 (117)
484 KOG3677 RNA polymerase I-assoc 21.3 4.7E+02 0.01 28.6 8.3 175 574-752 236-426 (525)
485 PF04123 DUF373: Domain of unk 21.0 6.2E+02 0.013 27.3 9.4 82 760-869 29-112 (344)
486 PF11848 DUF3368: Domain of un 20.6 3.3E+02 0.0071 19.5 5.2 32 650-681 13-44 (48)
487 COG4976 Predicted methyltransf 20.2 1.4E+02 0.003 29.7 4.0 53 753-805 6-58 (287)
488 PF07575 Nucleopor_Nup85: Nup8 20.1 4.8E+02 0.01 30.6 9.4 29 451-479 509-537 (566)
489 KOG0686 COP9 signalosome, subu 20.0 1.2E+03 0.026 25.7 11.7 156 641-804 152-332 (466)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.4e-150 Score=1371.46 Aligned_cols=811 Identities=34% Similarity=0.648 Sum_probs=799.9
Q ss_pred CCCCchhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcccHHHHHHHhhcCCChhhHhHHHHHHHHhCCCCChhHHH
Q 037236 125 KTRNLFQWNALVSGFTKNELYPDVLSIFVELLSDTELKPDNFTFPCVIKACGGIADVSFGSGVHGMAAKMGLIGDVFVSN 204 (953)
Q Consensus 125 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 204 (953)
..++..++|.++.+|++.|++++|+.+|++|.+ .|++|+..+|..++++|...+.+..|.++|..+.+.|..++..++|
T Consensus 47 ~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~-~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n 125 (857)
T PLN03077 47 SSSSTHDSNSQLRALCSHGQLEQALKLLESMQE-LRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGN 125 (857)
T ss_pred cccchhhHHHHHHHHHhCCCHHHHHHHHHHHHh-cCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHH
Confidence 356777899999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCChHHHHHHhccCCCCCeecHHHHHHHHHcCCCchHHHHHHHHhhhccCCCCCChhhHHHHHHhhhcCCCc
Q 037236 205 ALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGSSENGFSCESFDLLIKMMGCEEGFIPDVATVVTVLPVCAGEGNV 284 (953)
Q Consensus 205 ~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~ 284 (953)
+|+++|+++|+++.|.++|++|++||+++||+||.+|++.|++++|+++|++| ...|+.||..||+++|++|+..+++
T Consensus 126 ~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M--~~~g~~Pd~~t~~~ll~~~~~~~~~ 203 (857)
T PLN03077 126 AMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRM--LWAGVRPDVYTFPCVLRTCGGIPDL 203 (857)
T ss_pred HHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHH--HHcCCCCChhHHHHHHHHhCCccch
Confidence 99999999999999999999999999999999999999999999999999999 7889999999999999999999999
Q ss_pred hHHHHHHHHHHHhCCCCCchHHHHHHHhhHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHhcc
Q 037236 285 DLGILVHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFDKNNNKNVVSWNTIIGAFSMAGDVCGTFDLLRKMQMKE 364 (953)
Q Consensus 285 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 364 (953)
..+.++|..+.+.|+.||..++|+||++|+++|++++|+++|++|++||+++||+||.+|++.|++++|+++|++|...|
T Consensus 204 ~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g 283 (857)
T PLN03077 204 ARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELS 283 (857)
T ss_pred hhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCcccHHHHhccCCCCChhhHHHHH
Q 037236 365 EEMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLRHGFDNDELVANAFVVAYAKCGSEISAENVFHGMDSRTVSSWNALI 444 (953)
Q Consensus 365 ~~~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li 444 (953)
+.||..||+.++.+|+..++.+.+.++|..+.+.|+.||..+||+|+++|+++|++++|.++|++|..+|+++||+||
T Consensus 284 --~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li 361 (857)
T PLN03077 284 --VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMI 361 (857)
T ss_pred --CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccchhhHHHHHHHHhCCCCchhhHhhHHHHHHhcCChh
Q 037236 445 CGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSS 524 (953)
Q Consensus 445 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 524 (953)
.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.++|+.+.+.|+.|+..++++|+++|+++|+++
T Consensus 362 ~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~ 441 (857)
T PLN03077 362 SGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCID 441 (857)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCC
Q 037236 525 SARVLFDEMEDKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAIL 604 (953)
Q Consensus 525 ~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~ 604 (953)
+|.++|++|.++|+++||+||.+|+++|+.++|+++|++|.. +++||..||+++|.+|++.|.++.++++|..+.+.|+
T Consensus 442 ~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~ 520 (857)
T PLN03077 442 KALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGI 520 (857)
T ss_pred HHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999986 6999999999999999999999999999999999999
Q ss_pred CCCccHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037236 605 TNDAFVACSIIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMAC 684 (953)
Q Consensus 605 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~ 684 (953)
.++..++++|+++|+|+|++++|.++|+.+ .+|+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||+.++.+|
T Consensus 521 ~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~ 599 (857)
T PLN03077 521 GFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCAC 599 (857)
T ss_pred CccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHH
Confidence 999999999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHH
Q 037236 685 NHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSCRTYGALKMGEKV 764 (953)
Q Consensus 685 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 764 (953)
++.|++++|.++|++|.+.+|+.|+..||++|+++|+|+|+++||.+++++|+.+||..+|++|+++|+.||+.+.|+.+
T Consensus 600 ~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~ 679 (857)
T PLN03077 600 SRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELA 679 (857)
T ss_pred hhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Confidence 99999999999999998789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCccCCceeEEEeCCEEEEEeeCCCCCccHHHHHHHHHH
Q 037236 765 AKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKERGLQKEAGCSWIELGGNIHSFVVGDNMHPEWEEIRGMWGR 844 (953)
Q Consensus 765 ~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~ 844 (953)
++++++++|++++.|++|+|+|+..|+|++|.++|+.|+++|++|.|||||||+++++|.|++||++||+.++||.+|++
T Consensus 680 a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~ 759 (857)
T PLN03077 680 AQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEG 759 (857)
T ss_pred HHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcccCCCccccccchHHHHhhhhhhhHHHHHHHcccCCCCCCcEEEEeccccCCcchhhHHHHhhhcCceEE
Q 037236 845 LEEQISKIGYKPYTEAVLHELEEEEKVNILRGHSEKLAISFGLLKTTKDLTLRVCKNLRICVDCHNAAKLISKVAEREIV 924 (953)
Q Consensus 845 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~nlr~c~~ch~~~~~~s~~~~~~~~ 924 (953)
|..+|++.||+||++.+++ ++|++|+..+++||||||+|||||+||+|+||||+||||||+|||+++||||++++||||
T Consensus 760 l~~~~~~~g~~~~~~~~~~-~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~ 838 (857)
T PLN03077 760 FYEKMKASGLAGSESSSMD-EIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREIS 838 (857)
T ss_pred HHHHHHhCCcCCCcchhcc-ccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEE
Confidence 9999999999999999884 478899999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCcccccccccccCCc
Q 037236 925 IRDNKRFHHFRDGVCSCGD 943 (953)
Q Consensus 925 ~~~~~~~h~~~~g~csc~~ 943 (953)
|||.+|||||++|+|||||
T Consensus 839 ~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 839 VRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred EecCCcceeCCCCcccCCC
Confidence 9999999999999999998
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.5e-122 Score=1096.97 Aligned_cols=614 Identities=33% Similarity=0.614 Sum_probs=606.2
Q ss_pred CCCcccHHHHHHHHHcCCChhHHHHHHHHHHhccCCCCCchhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCchhHHH
Q 037236 331 NKNVVSWNTIIGAFSMAGDVCGTFDLLRKMQMKEEEMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLRHGFDNDELVAN 410 (953)
Q Consensus 331 ~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~ 410 (953)
.++.++|+.+|.+|.+.|++++|+++|+.|...+. ..||..||+.++.+|.+.++.+.+.++|..+.+.|+.||..++|
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~-~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCP-FTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 35778999999999999999999999999987542 68999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcccHHHHhccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccch
Q 037236 411 AFVVAYAKCGSEISAENVFHGMDSRTVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHR 490 (953)
Q Consensus 411 ~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 490 (953)
.|+++|+++|++++|.++|++|+++|+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..+..+.
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhCCCCchhhHhhHHHHHHhcCChhHHHHHHHhcccCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 037236 491 GKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMEDKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQ 570 (953)
Q Consensus 491 a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 570 (953)
+.++|..+.+.|+.+|..++++|+++|+++|++++|.++|++|.++|+++||+||.+|++.|++++|+++|++|.+.|+.
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~ 322 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHH
Q 037236 571 PCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHG 650 (953)
Q Consensus 571 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 650 (953)
||..||++++.+|++.|.++.|+++|..+.+.|+.||..++++|+++|+++|++++|.++|++|.+||+++||+||.+|+
T Consensus 323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~ 402 (697)
T PLN03081 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYG 402 (697)
T ss_pred CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHH
Q 037236 651 IHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAF 730 (953)
Q Consensus 651 ~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~ 730 (953)
++|+.++|+++|++|.+.|+.||.+||+.++.+|++.|++++|.++|+.|.+.+|+.|+..||++|+++|+++|++++|.
T Consensus 403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~ 482 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAY 482 (697)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred HHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCccC
Q 037236 731 KLIIEMPEEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKERGLQKE 810 (953)
Q Consensus 731 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~ 810 (953)
+++++|+..|+..+|++|+.+|+.+|+++.|+.+++++++++|++..+|+.|+++|++.|+|++|.++++.|+++|++|.
T Consensus 483 ~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~ 562 (697)
T PLN03081 483 AMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMH 562 (697)
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeEEEeCCEEEEEeeCCCCCccHHHHHHHHHHHHHHHHhcCcccCCCccccccchHHHHhhhhhhhHHHHHHHcccCC
Q 037236 811 AGCSWIELGGNIHSFVVGDNMHPEWEEIRGMWGRLEEQISKIGYKPYTEAVLHELEEEEKVNILRGHSEKLAISFGLLKT 890 (953)
Q Consensus 811 ~~~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~la~~~~~~~~ 890 (953)
||+|||++++++|.|++||++||+.++|+++|++|..+|++.||+||+.++++++++++|+..+++||||||+|||||+|
T Consensus 563 ~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~ 642 (697)
T PLN03081 563 PACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINT 642 (697)
T ss_pred CCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEeccccCCcchhhHHHHhhhcCceEEEecCCcccccccccccCCcCC
Q 037236 891 TKDLTLRVCKNLRICVDCHNAAKLISKVAEREIVIRDNKRFHHFRDGVCSCGDIG 945 (953)
Q Consensus 891 ~~~~~~~~~~nlr~c~~ch~~~~~~s~~~~~~~~~~~~~~~h~~~~g~csc~~~~ 945 (953)
|+|.||||+||||||+|||+|+||||++++|||||||.+|||||++|+|||||||
T Consensus 643 ~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 643 SEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred CCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 9999999999999999999999999999999999999999999999999999999
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.2e-95 Score=885.80 Aligned_cols=677 Identities=29% Similarity=0.501 Sum_probs=659.2
Q ss_pred CCCCCcccHHHHHHHHHhcCCCHHHHHHHHHHhhc--CCCChhHHHHHHHHhccCCChhHHHHHHHHHhhhcCCCCCchh
Q 037236 23 NASTEGLHFLQEITTLCEESKSLNKALSLLQENLH--NADLKEATGVLLQACGHEKDIEIGKRVHELISASTQFSNDFII 100 (953)
Q Consensus 23 ~~~~~~~~~~~~i~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 100 (953)
.++++...+|.++.+|++.| .+++|+.+|+.|.. .+|+..+|..++.+|...+.+..|.++|..+. +.+..+++.+
T Consensus 46 ~~~~~~~~~n~~i~~l~~~g-~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~ 123 (857)
T PLN03077 46 SSSSSTHDSNSQLRALCSHG-QLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRAL-SSHPSLGVRL 123 (857)
T ss_pred hcccchhhHHHHHHHHHhCC-CHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHH-HcCCCCCchH
Confidence 34567788999999999999 99999999999988 78999999999999999999999999999999 9999999999
Q ss_pred hhHHHHHHHhcCChhhHHHHhhcCCCCCchhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcccHHHHHHHhhcCCC
Q 037236 101 NTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYPDVLSIFVELLSDTELKPDNFTFPCVIKACGGIAD 180 (953)
Q Consensus 101 ~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~ll~~~~~~~~ 180 (953)
+|+||.+|+++|+++.|.++|++|++||+++||+||.+|++.|++++|+++|++|.. .|+.||.+||+.+|++|+..++
T Consensus 124 ~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~-~g~~Pd~~t~~~ll~~~~~~~~ 202 (857)
T PLN03077 124 GNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLW-AGVRPDVYTFPCVLRTCGGIPD 202 (857)
T ss_pred HHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCChhHHHHHHHHhCCccc
Confidence 999999999999999999999999999999999999999999999999999999999 8999999999999999999999
Q ss_pred hhhHhHHHHHHHHhCCCCChhHHHHHHHHhhccCChHHHHHHhccCCCCCeecHHHHHHHHHcCCCchHHHHHHHHhhhc
Q 037236 181 VSFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGSSENGFSCESFDLLIKMMGC 260 (953)
Q Consensus 181 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 260 (953)
+..+.++|..+.+.|+.||+.++|+||++|+++|++++|.++|++|++||+++||+||.+|++.|++++|+++|++| .
T Consensus 203 ~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M--~ 280 (857)
T PLN03077 203 LARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTM--R 280 (857)
T ss_pred hhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHH--H
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999 8
Q ss_pred cCCCCCChhhHHHHHHhhhcCCCchHHHHHHHHHHHhCCCCCchHHHHHHHhhHhcCChhHHHHHHhcCCCCCcccHHHH
Q 037236 261 EEGFIPDVATVVTVLPVCAGEGNVDLGILVHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFDKNNNKNVVSWNTI 340 (953)
Q Consensus 261 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~d~~~~~~l 340 (953)
..|+.||..||+.+|.+|++.|+++.|.++|..+.+.|+.||..+||+||.+|+++|++++|+++|++|.+||+++||+|
T Consensus 281 ~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~l 360 (857)
T PLN03077 281 ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAM 360 (857)
T ss_pred HcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCChhHHHHHHHHHHhccCCCCCchhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 037236 341 IGAFSMAGDVCGTFDLLRKMQMKEEEMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLRHGFDNDELVANAFVVAYAKCG 420 (953)
Q Consensus 341 i~~~~~~g~~~~A~~l~~~m~~~g~~~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g 420 (953)
|.+|++.|++++|+++|++|...| +.||..||..++.+|++.|+++.|.++|+.+.+.|+.|+..++|+||++|+++|
T Consensus 361 i~~~~~~g~~~~A~~lf~~M~~~g--~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g 438 (857)
T PLN03077 361 ISGYEKNGLPDKALETYALMEQDN--VSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCK 438 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC--CCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcC
Confidence 999999999999999999999998 999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHhccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccchhhHHHHHHHH
Q 037236 421 SEISAENVFHGMDSRTVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHGFVIR 500 (953)
Q Consensus 421 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~ 500 (953)
++++|.++|++|.++|+++||+||.+|+++|+.++|+.+|++|.. +++||..||+++|.+|++.|+++.+.++|..+.+
T Consensus 439 ~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~ 517 (857)
T PLN03077 439 CIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLR 517 (857)
T ss_pred CHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999986 5999999999999999999999999999999999
Q ss_pred hCCCCchhhHhhHHHHHHhcCChhHHHHHHHhcccCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHH
Q 037236 501 NGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMEDKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSIL 580 (953)
Q Consensus 501 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 580 (953)
.|+.++..++|+|+++|+++|++++|.++|+.+ .+|+++||+||.+|++.|+.++|+++|++|.+.|+.||.+||+.+|
T Consensus 518 ~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll 596 (857)
T PLN03077 518 TGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLL 596 (857)
T ss_pred hCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHH
Confidence 999999999999999999999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred HHhccccchHHHHHHHHHHH-HcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC-CCCHHHHHHHHHHHHhcCChHHH
Q 037236 581 SACSQLSALRLGKETHCYAL-KAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK-DKDVTSWNAIIGGHGIHGYGKEA 658 (953)
Q Consensus 581 ~a~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A 658 (953)
.+|++.|.+++|.++++.|. +.|+.|+..+|++++++|+++|++++|.+++++|+ +||..+|++|+.+|..+|+.+.+
T Consensus 597 ~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~ 676 (857)
T PLN03077 597 CACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELG 676 (857)
T ss_pred HHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHH
Confidence 99999999999999999998 68999999999999999999999999999999997 89999999999999999999999
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChh
Q 037236 659 IELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLE 711 (953)
Q Consensus 659 ~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 711 (953)
....+++.+ +.| +...|..+.+.|...|++++|.++.+.|. ..|+++++.
T Consensus 677 e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~-~~g~~k~~g 727 (857)
T PLN03077 677 ELAAQHIFE--LDPNSVGYYILLCNLYADAGKWDEVARVRKTMR-ENGLTVDPG 727 (857)
T ss_pred HHHHHHHHh--hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHH-HcCCCCCCC
Confidence 999999988 678 56678888899999999999999999994 578888754
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.8e-67 Score=627.45 Aligned_cols=474 Identities=26% Similarity=0.393 Sum_probs=459.3
Q ss_pred CCCeecHHHHHHHHHcCCCchHHHHHHHHhhhccC-CCCCChhhHHHHHHhhhcCCCchHHHHHHHHHHHhCCCCCchHH
Q 037236 228 ERNLVSWNSIICGSSENGFSCESFDLLIKMMGCEE-GFIPDVATVVTVLPVCAGEGNVDLGILVHGLAVKLGLTRELMVN 306 (953)
Q Consensus 228 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 306 (953)
.++.++|+++|.+|.+.|++++|+++|+.| ... +..||..||+.++.+|++.++++.+.++|..|.+.|+.||..++
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m--~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~ 161 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEIL--EAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMM 161 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHH--HhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHH
Confidence 467889999999999999999999999999 554 57899999999999999999999999999999999999999999
Q ss_pred HHHHHhhHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHhccCCCCCchhhHHHHHHHhccccc
Q 037236 307 NALVDMYAKCGFLSEAQILFDKNNNKNVVSWNTIIGAFSMAGDVCGTFDLLRKMQMKEEEMKPNEVTVLNVLTSCSEKSE 386 (953)
Q Consensus 307 ~~li~~~~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~p~~~t~~~ll~~~~~~~~ 386 (953)
|.|+++|+++|++++|+++|++|++||+++||++|.+|++.|++++|+++|++|.+.| +.||..||..++.+|+..+.
T Consensus 162 n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g--~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 162 NRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDG--SDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhC--CCCChhhHHHHHHHHhcCCc
Confidence 9999999999999999999999999999999999999999999999999999999998 99999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCcccHHHHhccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 037236 387 LLSLKELHGYSLRHGFDNDELVANAFVVAYAKCGSEISAENVFHGMDSRTVSSWNALICGYAQNGDHLKALDYFLQMTHS 466 (953)
Q Consensus 387 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 466 (953)
...+.++|..+.+.|+.+|..++|+||++|+++|++++|.++|++|+++|+++||+||.+|++.|+.++|+++|++|.+.
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~ 319 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS 319 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcchHHHHHHhhccccccchhhHHHHHHHHhCCCCchhhHhhHHHHHHhcCChhHHHHHHHhcccCCcccHHHHHH
Q 037236 467 DLEPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMEDKSLVSWNTMIA 546 (953)
Q Consensus 467 g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~ 546 (953)
|+.||..||++++.+|++.|+++.|.++|..+.+.|+.||..++++|+++|+++|++++|.++|++|.++|+++||+||.
T Consensus 320 g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~ 399 (697)
T PLN03081 320 GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIA 399 (697)
T ss_pred CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHH-cCCCCCccHHHHHHHHHHhcCCHH
Q 037236 547 GYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALK-AILTNDAFVACSIIDMYAKCGCLE 625 (953)
Q Consensus 547 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~y~~~g~~~ 625 (953)
+|++.|+.++|+++|++|.+.|+.||.+||+++|.+|++.|.+++|.++|+.|.+ .|+.|+..+|++++++|++.|+++
T Consensus 400 ~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~ 479 (697)
T PLN03081 400 GYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLD 479 (697)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHH
Confidence 9999999999999999999999999999999999999999999999999999986 699999999999999999999999
Q ss_pred HHHHHhhhcC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 037236 626 QSRRVFDRLK-DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKL 703 (953)
Q Consensus 626 ~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 703 (953)
+|.++|++|. .|+..+|++|+.+|..+|+.+.|..+++++.+ +.| +..+|..+++.|++.|++++|.++++.|. .
T Consensus 480 eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~-~ 556 (697)
T PLN03081 480 EAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLK-R 556 (697)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHH-H
Confidence 9999999998 78999999999999999999999999999976 677 46799999999999999999999999995 4
Q ss_pred cCCCC
Q 037236 704 HAVKP 708 (953)
Q Consensus 704 ~~~~p 708 (953)
.|+.+
T Consensus 557 ~g~~k 561 (697)
T PLN03081 557 KGLSM 561 (697)
T ss_pred cCCcc
Confidence 67654
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=8.2e-66 Score=612.49 Aligned_cols=523 Identities=18% Similarity=0.242 Sum_probs=436.3
Q ss_pred CCCchhhhHHHHHHHhcCChhhHHHHhhcCCCCCch-----hHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcccHH
Q 037236 95 SNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLF-----QWNALVSGFTKNELYPDVLSIFVELLSDTELKPDNFTFP 169 (953)
Q Consensus 95 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~-----~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~ 169 (953)
.++...|..+++.|++.|++++|.++|++|++++.+ .++.++.+|.+.|..++|+.+|+.|.. ||..+|+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----pd~~Tyn 441 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----PTLSTFN 441 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----CCHHHHH
Confidence 445566666777777777777788888777765544 344556667777777777777777643 7777788
Q ss_pred HHHHHhhcCCChhhHhHHHHHHHHhCCCCChhHHHHHHHHhhccCChHHHHHHhccCC----CCCeecHHHHHHHHHcCC
Q 037236 170 CVIKACGGIADVSFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP----ERNLVSWNSIICGSSENG 245 (953)
Q Consensus 170 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g 245 (953)
.+|++|++.|+++.|.++|+.|.+.|+.||..+||+||++|+++|++++|.++|++|. .||.++||+||.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 8888888888888888888888888888888888888888888888888888888887 478888888888888888
Q ss_pred CchHHHHHHHHhhhccCCCCCChhhHHHHHHhhhcCCCchHHHHHHHHHHH--hCCCCCchHHHHHHHhhHhcCChhHHH
Q 037236 246 FSCESFDLLIKMMGCEEGFIPDVATVVTVLPVCAGEGNVDLGILVHGLAVK--LGLTRELMVNNALVDMYAKCGFLSEAQ 323 (953)
Q Consensus 246 ~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A~ 323 (953)
++++|+++|++| ...|+.||..||+.+|.+|++.|+++.|.++|+.|.+ .|+.||..+|++||.+|+++|++++|.
T Consensus 522 ~~eeAl~lf~~M--~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~ 599 (1060)
T PLN03218 522 QVAKAFGAYGIM--RSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAK 599 (1060)
T ss_pred CHHHHHHHHHHH--HHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 888888888888 7888899999999999999999999999999998876 578889999999999999999999999
Q ss_pred HHHhcCCC----CCcccHHHHHHHHHcCCChhHHHHHHHHHHhccCCCCCchhhHHHHHHHhccccchHHHHHHHHHHHH
Q 037236 324 ILFDKNNN----KNVVSWNTIIGAFSMAGDVCGTFDLLRKMQMKEEEMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLR 399 (953)
Q Consensus 324 ~~f~~~~~----~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~ 399 (953)
++|++|.+ |+..+||++|.+|++.|++++|+++|++|...| +.||..||+.++.+|++.|+++.|.+++..|.+
T Consensus 600 elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~G--v~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k 677 (1060)
T PLN03218 600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG--VKPDEVFFSALVDVAGHAGDLDKAFEILQDARK 677 (1060)
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99988865 566899999999999999999999999999998 999999999999999999999999999999999
Q ss_pred cCCCCchhHHHHHHHHHHhcCCcccHHHHhccCC----CCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchH
Q 037236 400 HGFDNDELVANAFVVAYAKCGSEISAENVFHGMD----SRTVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSI 475 (953)
Q Consensus 400 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 475 (953)
.|+.||..+|++||.+|+++|++++|.++|++|. .||+.+||+||.+|++.|++++|+++|++|...|+.||..||
T Consensus 678 ~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty 757 (1060)
T PLN03218 678 QGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITY 757 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 9999999999999999999999999999999984 679999999999999999999999999999999999999999
Q ss_pred HHHHHhhccccccchhhHHHHHHHHhCCCCchhhHhhHHHHHH----hcCChhHHHHHHHhcccCCcccHHHHHHHHHhc
Q 037236 476 GSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYM----HCEKSSSARVLFDEMEDKSLVSWNTMIAGYSQN 551 (953)
Q Consensus 476 ~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~----~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~ 551 (953)
+.++.+|++.|+++.|.++|.+|.+.|+.||..+|++|+.++. +++...++...|+.+...+...|+
T Consensus 758 ~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~--------- 828 (1060)
T PLN03218 758 SILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWT--------- 828 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchH---------
Confidence 9999999999999999999999999999999999999998743 334443344444433333334444
Q ss_pred CChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHh
Q 037236 552 KLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVF 631 (953)
Q Consensus 552 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~ 631 (953)
++|+.+|++|.+.|+.||..||+.+|.++. +.+..+.+..++
T Consensus 829 ---~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~-----------------------------------~~~~~~~~~~m~ 870 (1060)
T PLN03218 829 ---SWALMVYRETISAGTLPTMEVLSQVLGCLQ-----------------------------------LPHDATLRNRLI 870 (1060)
T ss_pred ---HHHHHHHHHHHHCCCCCCHHHHHHHHHHhc-----------------------------------ccccHHHHHHHH
Confidence 569999999999999998888888774432 234455566666
Q ss_pred hhcC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 037236 632 DRLK----DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTF 675 (953)
Q Consensus 632 ~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~ 675 (953)
+.|. .++..+|+++|.++.+. .++|+.+|++|...|+.|+..
T Consensus 871 ~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 871 ENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 6554 45677888888887432 367999999999999988765
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=7.4e-66 Score=612.89 Aligned_cols=520 Identities=18% Similarity=0.247 Sum_probs=474.4
Q ss_pred CCCChhHHHHHHHHhhccCChHHHHHHhccCCCCCeecH-----HHHHHHHHcCCCchHHHHHHHHhhhccCCCCCChhh
Q 037236 196 LIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSW-----NSIICGSSENGFSCESFDLLIKMMGCEEGFIPDVAT 270 (953)
Q Consensus 196 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~-----~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t 270 (953)
..++...|..++..|+++|++++|+++|+.|++++.+.| +.++.+|.+.|..++|+.+|+.| .. ||..|
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M--~~----pd~~T 439 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLI--RN----PTLST 439 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHc--CC----CCHHH
Confidence 345677899999999999999999999999998776654 45667799999999999999999 43 99999
Q ss_pred HHHHHHhhhcCCCchHHHHHHHHHHHhCCCCCchHHHHHHHhhHhcCChhHHHHHHhcCC----CCCcccHHHHHHHHHc
Q 037236 271 VVTVLPVCAGEGNVDLGILVHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFDKNN----NKNVVSWNTIIGAFSM 346 (953)
Q Consensus 271 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~----~~d~~~~~~li~~~~~ 346 (953)
|+.+|.+|++.|+++.|.++|+.|.+.|+.||..+|++||.+|+++|++++|.++|++|. .||.++||+||.+|++
T Consensus 440 yn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k 519 (1060)
T PLN03218 440 FNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCAR 519 (1060)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998 5899999999999999
Q ss_pred CCChhHHHHHHHHHHhccCCCCCchhhHHHHHHHhccccchHHHHHHHHHHHH--cCCCCchhHHHHHHHHHHhcCCccc
Q 037236 347 AGDVCGTFDLLRKMQMKEEEMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLR--HGFDNDELVANAFVVAYAKCGSEIS 424 (953)
Q Consensus 347 ~g~~~~A~~l~~~m~~~g~~~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~--~g~~~~~~~~~~li~~y~~~g~~~~ 424 (953)
.|++++|+++|++|...| +.||..||+.+|.+|++.|+++.|.+++..|.+ .|+.||..+|++||.+|+++|++++
T Consensus 520 ~G~~eeAl~lf~~M~~~G--v~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~lde 597 (1060)
T PLN03218 520 AGQVAKAFGAYGIMRSKN--VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDR 597 (1060)
T ss_pred CcCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999 999999999999999999999999999999986 6899999999999999999999999
Q ss_pred HHHHhccCCC----CChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccchhhHHHHHHHH
Q 037236 425 AENVFHGMDS----RTVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHGFVIR 500 (953)
Q Consensus 425 A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~ 500 (953)
|.++|+.|.+ ++..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.|.+
T Consensus 598 A~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k 677 (1060)
T PLN03218 598 AKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARK 677 (1060)
T ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 9999999975 466999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCchhhHhhHHHHHHhcCChhHHHHHHHhcc----cCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhH
Q 037236 501 NGLEGDSFTGISLLSLYMHCEKSSSARVLFDEME----DKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISI 576 (953)
Q Consensus 501 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 576 (953)
.|+.|+..+|++||.+|+++|++++|.++|++|. .||.++||+||.+|++.|++++|+++|++|.+.|+.||..||
T Consensus 678 ~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty 757 (1060)
T PLN03218 678 QGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITY 757 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 9999999999999999999999999999999995 589999999999999999999999999999999999999999
Q ss_pred HHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHH----HhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhc
Q 037236 577 VSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMY----AKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIH 652 (953)
Q Consensus 577 ~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y----~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 652 (953)
+.++.+|++.|+++.|.++|..|.+.|+.||..+|++|+.++ .+++...++...|+.+...+...|+
T Consensus 758 ~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~--------- 828 (1060)
T PLN03218 758 SILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWT--------- 828 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchH---------
Confidence 999999999999999999999999999999999999999874 3444444444445443333444443
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHH
Q 037236 653 GYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKL 732 (953)
Q Consensus 653 g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~ 732 (953)
++|+.+|++|++.|+.||..||..++.+++..+..+.+..+++.|. ..+..|+..+|++|++.+++. .++|..+
T Consensus 829 ---~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~-~~~~~~~~~~y~~Li~g~~~~--~~~A~~l 902 (1060)
T PLN03218 829 ---SWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLG-ISADSQKQSNLSTLVDGFGEY--DPRAFSL 902 (1060)
T ss_pred ---HHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhc-cCCCCcchhhhHHHHHhhccC--hHHHHHH
Confidence 5699999999999999999999999977778888888877777773 355667788999999998543 4789999
Q ss_pred HHhCCC
Q 037236 733 IIEMPE 738 (953)
Q Consensus 733 ~~~~~~ 738 (953)
+++|..
T Consensus 903 ~~em~~ 908 (1060)
T PLN03218 903 LEEAAS 908 (1060)
T ss_pred HHHHHH
Confidence 999864
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.2e-40 Score=415.19 Aligned_cols=754 Identities=11% Similarity=-0.026 Sum_probs=546.0
Q ss_pred CcccHHHHHHHHHhcCCCHHHHHHHHHHhhc-CCCChhHHHHHHHHhccCCChhHHHHHHHHHhhhcCCCCCchhhhHHH
Q 037236 27 EGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELISASTQFSNDFIINTRLI 105 (953)
Q Consensus 27 ~~~~~~~~i~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Li 105 (953)
....+..+...+...| ++++|...|+++.. .|.+..++..+...+...|+++.|..++.++. .. .+++...+..+.
T Consensus 124 ~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~-~~-~~~~~~~~~~~~ 200 (899)
T TIGR02917 124 AAELLALRGLAYLGLG-QLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVL-TA-DPGNVDALLLKG 200 (899)
T ss_pred hHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHH-Hh-CCCChHHHHHHH
Confidence 3455666666777777 77777777777766 44455666677777777777777777777776 33 245566666677
Q ss_pred HHHHhcCChhhHHHHhhcCCC---CCchhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcccHHHHHHHhhcCCChh
Q 037236 106 TMYSLCGFPLDSRRVFDSLKT---RNLFQWNALVSGFTKNELYPDVLSIFVELLSDTELKPDNFTFPCVIKACGGIADVS 182 (953)
Q Consensus 106 ~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~ll~~~~~~~~~~ 182 (953)
..+...|++++|...|++... .+..+|..++..+...|++++|...++.+.+ .. +.+..........+...|+++
T Consensus 201 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~ 278 (899)
T TIGR02917 201 DLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLK-KA-PNSPLAHYLKALVDFQKKNYE 278 (899)
T ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hC-CCCchHHHHHHHHHHHhcCHH
Confidence 777777777777777776532 2445677777777777777778777777766 22 222222323333345667777
Q ss_pred hHhHHHHHHHHhCCCCChhHHHHHHHHhhccCChHHHHHHhccCCC--C-CeecHHHHHHHHHcCCCchHHHHHHHHhhh
Q 037236 183 FGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--R-NLVSWNSIICGSSENGFSCESFDLLIKMMG 259 (953)
Q Consensus 183 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 259 (953)
.|...+..+.+.+.. +...+..+...+...|++++|...|+.+.+ | +...+..+...+.+.|++++|...+..+
T Consensus 279 ~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~-- 355 (899)
T TIGR02917 279 DARETLQDALKSAPE-YLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPA-- 355 (899)
T ss_pred HHHHHHHHHHHhCCC-chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHH--
Confidence 777777777765533 222333445566677888888888776643 2 3445666677778888888888888877
Q ss_pred ccCCCCCChhhHHHHHHhhhcCCCchHHHHHHHHHHHhCCCCCchHHHHHHHhhHhcCChhHHHHHHhcCCC---CCccc
Q 037236 260 CEEGFIPDVATVVTVLPVCAGEGNVDLGILVHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFDKNNN---KNVVS 336 (953)
Q Consensus 260 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~d~~~ 336 (953)
.. ..+.+...+..+...+...|++++|.+++..+.+.. +.+...+..+...+...|++++|.+.|++... .+...
T Consensus 356 ~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 433 (899)
T TIGR02917 356 LG-LDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRA 433 (899)
T ss_pred Hh-cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhh
Confidence 22 234456677777777788888888888888777654 33556667777778888888888888876543 23445
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhccCCCCCchhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 037236 337 WNTIIGAFSMAGDVCGTFDLLRKMQMKEEEMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLRHGFDNDELVANAFVVAY 416 (953)
Q Consensus 337 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y 416 (953)
+..++..+.+.|++++|+++++.+... .+++..++..+...+...|+.+.|.+.+..+++.. +.+...+..+...+
T Consensus 434 ~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 509 (899)
T TIGR02917 434 DLLLILSYLRSGQFDKALAAAKKLEKK---QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARID 509 (899)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHh---CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHH
Confidence 666777788888888888888887764 34556677777777888888888888888877653 33455677777888
Q ss_pred HhcCCcccHHHHhccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccchhhH
Q 037236 417 AKCGSEISAENVFHGMDS---RTVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKE 493 (953)
Q Consensus 417 ~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 493 (953)
...|++++|.+.|+++.. .+..++..+...+.+.|+.++|...|+++...+ +.+...+..+...+...|+++.+..
T Consensus 510 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 588 (899)
T TIGR02917 510 IQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALA 588 (899)
T ss_pred HHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHH
Confidence 888888888888877643 356677888888888888888888888887653 3345566677777888888888888
Q ss_pred HHHHHHHhCCCCchhhHhhHHHHHHhcCChhHHHHHHHhccc---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 037236 494 IHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMED---KSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQ 570 (953)
Q Consensus 494 i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 570 (953)
++..+.+.. +.+...+..+...|.+.|++++|...|+.+.+ .+...|..+...|.+.|++++|+..|+++.+.. +
T Consensus 589 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 666 (899)
T TIGR02917 589 ILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-P 666 (899)
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-C
Confidence 888877654 33566788888888888888888888887653 345577778888888888888888888887653 3
Q ss_pred CChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC--CCCHHHHHHHHHH
Q 037236 571 PCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK--DKDVTSWNAIIGG 648 (953)
Q Consensus 571 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~ 648 (953)
.+..++..+...+...|+.+++..++..+.+... .+...+..+...|.+.|++++|...|..+. .|+..++..++..
T Consensus 667 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 745 (899)
T TIGR02917 667 DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRA 745 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHH
Confidence 3456677777778888888888888888777653 356677778888888888888888888775 4555677778888
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHH
Q 037236 649 HGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLD 727 (953)
Q Consensus 649 ~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~ 727 (953)
+...|+.++|.+.++++.+. .| +...+..+...|...|++++|..+|+++.+.. .++...+..+..++.+.|+ +
T Consensus 746 ~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~-~ 820 (899)
T TIGR02917 746 LLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA--PDNAVVLNNLAWLYLELKD-P 820 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCc-H
Confidence 88888888888888888874 34 66777788888888888888888888886632 2336778888888888888 7
Q ss_pred HHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 037236 728 DAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMK 803 (953)
Q Consensus 728 eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 803 (953)
+|++.++++.. +.++.+|..+...+...|+++.|...++++++.+|.++.++..++.+|.+.|++++|.+++++|.
T Consensus 821 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 821 RALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 78888877643 34566778888888888888888888888888888888888888888888888888888877764
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.9e-40 Score=415.82 Aligned_cols=758 Identities=11% Similarity=0.027 Sum_probs=461.2
Q ss_pred CcccHHHHHHHHHhcCCCHHHHHHHHHHhhc-CCCChhHHHHHHHHhccCCChhHHHHHHHHHhhhcCCCCCchhhhHHH
Q 037236 27 EGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELISASTQFSNDFIINTRLI 105 (953)
Q Consensus 27 ~~~~~~~~i~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Li 105 (953)
++..|..+...|...| ++++|+..|+++.. .+++......+.+.+...|+++.|...+.... ....+.+...+..+.
T Consensus 55 ~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~~~ 132 (899)
T TIGR02917 55 DAEARFLLGKIYLALG-DYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKT-LLDDEGAAELLALRG 132 (899)
T ss_pred CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCChhhhHHHHHHHHHHCCCHHHHHHhhcccc-cCCchhhHHHHHHHH
Confidence 3334444444455555 55555555554444 33333333344444444444444444443332 122222334444555
Q ss_pred HHHHhcCChhhHHHHhhcCCC--C-CchhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcccHHHHHHHhhcCCChh
Q 037236 106 TMYSLCGFPLDSRRVFDSLKT--R-NLFQWNALVSGFTKNELYPDVLSIFVELLSDTELKPDNFTFPCVIKACGGIADVS 182 (953)
Q Consensus 106 ~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~ll~~~~~~~~~~ 182 (953)
..|.+.|++++|...|+++.+ | +...|..+...+...|++++|..+++++.+ ..+++...+..+...+...|+.+
T Consensus 133 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~ 210 (899)
T TIGR02917 133 LAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLT--ADPGNVDALLLKGDLLLSLGNIE 210 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCCHH
Confidence 556666666666666665432 2 234555666666666666666666666655 22334445555555566666666
Q ss_pred hHhHHHHHHHHhCCCCChhHHHHHHHHhhccCChHHHHHHhccCCC--C-CeecHHHHHHHHHcCCCchHHHHHHHHhhh
Q 037236 183 FGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--R-NLVSWNSIICGSSENGFSCESFDLLIKMMG 259 (953)
Q Consensus 183 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 259 (953)
.|...+..+.+..+ .+..++..++..+...|++++|...|+.+.+ | +...+......+...|++++|...|+++
T Consensus 211 ~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~-- 287 (899)
T TIGR02917 211 LALAAYRKAIALRP-NNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDA-- 287 (899)
T ss_pred HHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHH--
Confidence 66666666665432 3455566666666666666666666665542 1 1112222222334455666666666555
Q ss_pred ccCCCCCC-hhhHHHHHHhhhcCCCchHHHHHHHHHHHhCCCCCchHHHHHHHhhHhcCChhHHHHHHhcCCC---CCcc
Q 037236 260 CEEGFIPD-VATVVTVLPVCAGEGNVDLGILVHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFDKNNN---KNVV 335 (953)
Q Consensus 260 ~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~d~~ 335 (953)
.... |+ ...+..+...+...|+++.|...+..+.+.. +.+......+...+.+.|++++|...++++.. .+..
T Consensus 288 l~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 364 (899)
T TIGR02917 288 LKSA--PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPA 364 (899)
T ss_pred HHhC--CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH
Confidence 2211 21 1122223334445666666666666665543 23344455555666666666666666655432 2344
Q ss_pred cHHHHHHHHHcCCChhHHHHHHHHHHhccCCCCCchhhHHHHHHHhccccchHHHHHHHHHHHHcC--------------
Q 037236 336 SWNTIIGAFSMAGDVCGTFDLLRKMQMKEEEMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLRHG-------------- 401 (953)
Q Consensus 336 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g-------------- 401 (953)
.|+.+...+.+.|++++|.+.|+++.... +.+...+..+...+...++.+.+...+..+.+..
T Consensus 365 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 441 (899)
T TIGR02917 365 ALSLLGEAYLALGDFEKAAEYLAKATELD---PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSY 441 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHH
Confidence 55556666666666666666666655431 1122233333334444444554444444444332
Q ss_pred -------------------CCCchhHHHHHHHHHHhcCCcccHHHHhccCC---CCChhhHHHHHHHHHhcCChHHHHHH
Q 037236 402 -------------------FDNDELVANAFVVAYAKCGSEISAENVFHGMD---SRTVSSWNALICGYAQNGDHLKALDY 459 (953)
Q Consensus 402 -------------------~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~ 459 (953)
.+.+..++..+...|...|++++|.+.|+++. ..+...+..+...+...|++++|.+.
T Consensus 442 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 521 (899)
T TIGR02917 442 LRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQR 521 (899)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 23344555555666666666666666665542 22344455555566666666666666
Q ss_pred HHHhhhCCCCCCcchHHHHHHhhccccccchhhHHHHHHHHhCCCCchhhHhhHHHHHHhcCChhHHHHHHHhccc---C
Q 037236 460 FLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMED---K 536 (953)
Q Consensus 460 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~ 536 (953)
|+++...+ +.+..++..+...+...|+.+.+...+..+.+.+. .+...+..++..|.+.|++++|..+++.+.+ .
T Consensus 522 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 599 (899)
T TIGR02917 522 FEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAAPD 599 (899)
T ss_pred HHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 66665542 22444555555666666666666666666655543 2344555666777777777777777776653 2
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHH
Q 037236 537 SLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIID 616 (953)
Q Consensus 537 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 616 (953)
+...|..+...|.+.|++++|+..|+++.+.. +.+...+..+..++...|+.++|..++..+.+.... +...+..++.
T Consensus 600 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 677 (899)
T TIGR02917 600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPD-NTEAQIGLAQ 677 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 44567777777777777777777777776643 223445566666677777777777777777665322 4566777777
Q ss_pred HHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 037236 617 MYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENG 693 (953)
Q Consensus 617 ~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a 693 (953)
.+.+.|++++|..+++.+. ..+...|..+...+...|++++|++.|+++... .|+..++..++.++.+.|++++|
T Consensus 678 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A 755 (899)
T TIGR02917 678 LLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEA 755 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHH
Confidence 7777788887777777775 345667777778888888888888888888874 56657777788888888888888
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 037236 694 LKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLEL 771 (953)
Q Consensus 694 ~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l 771 (953)
.+.++.+.+.. ..+...+..+..+|.+.|++++|.+.++++.. ++++.++..+...+...|+ +.|...+++++++
T Consensus 756 ~~~~~~~l~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 756 VKTLEAWLKTH--PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 88888886632 23477788888899999999999999988753 4567888999999999998 7799999999999
Q ss_pred CCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCC
Q 037236 772 EPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKERG 806 (953)
Q Consensus 772 ~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 806 (953)
.|+++..+..++.+|...|++++|...++++.+.+
T Consensus 833 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 833 APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999888887643
No 9
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=100.00 E-value=3.5e-34 Score=249.07 Aligned_cols=106 Identities=58% Similarity=0.996 Sum_probs=98.0
Q ss_pred ceeEEEeCCEEEEEeeCCCCCccHHHHHHHHHHHHHHHHhcCcccCCCccccccchHHH--------HhhhhhhhHHHHH
Q 037236 812 GCSWIELGGNIHSFVVGDNMHPEWEEIRGMWGRLEEQISKIGYKPYTEAVLHELEEEEK--------VNILRGHSEKLAI 883 (953)
Q Consensus 812 ~~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~e~la~ 883 (953)
||||+++ |.|++||.+||+. ++..++...||.|++..+.++++++++ +..+++||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 7999988 9999999999998 445567788999999999998888766 5688999999999
Q ss_pred HHcccCCCCCCcEEEEecc-ccCCcchhhHHHHhhhcCceEEEecCCcccccc
Q 037236 884 SFGLLKTTKDLTLRVCKNL-RICVDCHNAAKLISKVAEREIVIRDNKRFHHFR 935 (953)
Q Consensus 884 ~~~~~~~~~~~~~~~~~nl-r~c~~ch~~~~~~s~~~~~~~~~~~~~~~h~~~ 935 (953)
||||+++ ||+||+ |||+|||+|+|+||++++|+|||||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999999 899999 999999999999999999999999999999997
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=2.6e-23 Score=260.57 Aligned_cols=666 Identities=10% Similarity=-0.004 Sum_probs=409.2
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhhc-CCCChhHHHHHHHHhccCCChhHHHHHHHHHhhhcCCCCCchhhhHHHHHHH
Q 037236 31 FLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELISASTQFSNDFIINTRLITMYS 109 (953)
Q Consensus 31 ~~~~i~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Li~~y~ 109 (953)
.-..++-+...+ +.+.|.+.+.++.. .|.++.++..+.+.+...|+.++|.+.++++. +.. +.++......
T Consensus 31 Ll~q~~~~~~~~-~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~-~~~-P~~~~~~~~~----- 102 (1157)
T PRK11447 31 LLEQVRLGEATH-REDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLS-QLA-PDSNAYRSSR----- 102 (1157)
T ss_pred HHHHHHHHHhhC-ChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-hhC-CCChHHHHHH-----
Confidence 344445566666 77888888877777 55566777777777777788888887777776 332 2222221100
Q ss_pred hcCChhhHHHHhhcCCCCCchhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCccc-HHHHHHHhhcCCChhhHhHHH
Q 037236 110 LCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYPDVLSIFVELLSDTELKPDNFT-FPCVIKACGGIADVSFGSGVH 188 (953)
Q Consensus 110 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~ 188 (953)
..+ .+..|+...+-.+.+.+...|++++|+..|+.+.+ +.+|+... ...........++.++|...+
T Consensus 103 ---------~~~-~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~--~~p~~~~la~~y~~~~~~~~g~~~~A~~~L 170 (1157)
T PRK11447 103 ---------TTM-LLSTPEGRQALQQARLLATTGRTEEALASYDKLFN--GAPPELDLAVEYWRLVAKLPAQRPEAINQL 170 (1157)
T ss_pred ---------HHH-HhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHcc--CCCCChHHHHHHHHHHhhCCccHHHHHHHH
Confidence 000 01122222334445567778888888888888776 33333321 111112223457788888888
Q ss_pred HHHHHhCCCCChhHHHHHHHHhhccCChHHHHHHhccCCCCCeecHHHHHHHHHcCCCchHHHHHHHHhhhccCCCCCCh
Q 037236 189 GMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGSSENGFSCESFDLLIKMMGCEEGFIPDV 268 (953)
Q Consensus 189 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~ 268 (953)
+.+.+..+. +...+..+...+...|+.++|+..|+++...... +...+...+..+ ...+..|+.
T Consensus 171 ~~ll~~~P~-~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~-------------~~~aa~~~~~~l--~~~~~~~~~ 234 (1157)
T PRK11447 171 QRLNADYPG-NTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAG-------------RDAAAQLWYGQI--KDMPVSDAS 234 (1157)
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCc-------------hHHHHHHHHHHH--hccCCChhh
Confidence 888876533 5667778888888889989998888887542111 111122222222 122222221
Q ss_pred h-hHHHHHHhhhcCCCchHHHHHHHHHHHhCCCCCchHHHHHHHhhHhcCChhHHHHHHhcCCC---CCcccHHHHHHHH
Q 037236 269 A-TVVTVLPVCAGEGNVDLGILVHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFDKNNN---KNVVSWNTIIGAF 344 (953)
Q Consensus 269 ~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~d~~~~~~li~~~ 344 (953)
. .+...+..+-.......+...+....+....|+.. ...+...+...|++++|+..|++..+ .|...+..+...|
T Consensus 235 ~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~ 313 (1157)
T PRK11447 235 VAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-ARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAY 313 (1157)
T ss_pred HHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 1 12222222222233444555555544433233321 22335566778888888888876543 3566778888888
Q ss_pred HcCCChhHHHHHHHHHHhccCCCCCchh---hHHHHHHHhccccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 037236 345 SMAGDVCGTFDLLRKMQMKEEEMKPNEV---TVLNVLTSCSEKSELLSLKELHGYSLRHGFDNDELVANAFVVAYAKCGS 421 (953)
Q Consensus 345 ~~~g~~~~A~~l~~~m~~~g~~~~p~~~---t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~ 421 (953)
.+.|++++|+..|++..+.. |+.. .+..++.. ........+...+.+.|+
T Consensus 314 ~~~g~~~eA~~~l~~Al~~~----p~~~~~~~~~~ll~~-----------------------~~~~~~~~~g~~~~~~g~ 366 (1157)
T PRK11447 314 SQQGDRARAVAQFEKALALD----PHSSNRDKWESLLKV-----------------------NRYWLLIQQGDAALKANN 366 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHhC----CCccchhHHHHHHHh-----------------------hhHHHHHHHHHHHHHCCC
Confidence 88888888888888877643 3211 11111100 000011122344556666
Q ss_pred cccHHHHhccCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccchhhHHHHHH
Q 037236 422 EISAENVFHGMDS---RTVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHGFV 498 (953)
Q Consensus 422 ~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~ 498 (953)
+++|...|++... .+...+..+...+...|++++|++.|++..+. .|+.
T Consensus 367 ~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~--~p~~-------------------------- 418 (1157)
T PRK11447 367 LAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM--DPGN-------------------------- 418 (1157)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCC--------------------------
Confidence 6666666665432 23445555666666666666666666666553 2221
Q ss_pred HHhCCCCchhhHhhHHHHHHhcCChhHHHHHHHhcccCC------------cccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 037236 499 IRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMEDKS------------LVSWNTMIAGYSQNKLPVEAIVLFRRMFS 566 (953)
Q Consensus 499 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 566 (953)
...+..+...|. .++.++|...++.+.... ...+..+...+...|++++|++.|++..+
T Consensus 419 --------~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~ 489 (1157)
T PRK11447 419 --------TNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLA 489 (1157)
T ss_pred --------HHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 122223333332 234455555555443211 12344455666777777777777777766
Q ss_pred cCCCCCh-hhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCCC----CHH-
Q 037236 567 IGVQPCE-ISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKDK----DVT- 640 (953)
Q Consensus 567 ~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~----~~~- 640 (953)
. .|+. ..+..+...+.+.|+.++|...++.+.+.... +...+..+...+.+.|+.++|...++.+... +..
T Consensus 490 ~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~ 566 (1157)
T PRK11447 490 L--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQE 566 (1157)
T ss_pred h--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHH
Confidence 4 3443 33445555677777777777777777664332 4444555556677788999999998887632 111
Q ss_pred --------HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hh
Q 037236 641 --------SWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LE 711 (953)
Q Consensus 641 --------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~ 711 (953)
.+..+...+...|+.++|+++++. ..++...+..+...+...|++++|+..|+.+.+ ..|+ ..
T Consensus 567 l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~---~~P~~~~ 638 (1157)
T PRK11447 567 LAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT---REPGNAD 638 (1157)
T ss_pred HHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHH
Confidence 123456678899999999999872 233566778888999999999999999999976 4566 77
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCCC-CC-ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcc------hHHHHH
Q 037236 712 HYACVVDMLGRAGKLDDAFKLIIEMPE-EA-DAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAE------NYVLVS 783 (953)
Q Consensus 712 ~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~------~~~~l~ 783 (953)
.+..++.+|...|++++|++.++..+. .| +..++..+..++...|++++|...++++++..|+++. .+..++
T Consensus 639 a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a 718 (1157)
T PRK11447 639 ARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAA 718 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHH
Confidence 888999999999999999999998764 33 5667888888889999999999999999998776553 566679
Q ss_pred HHHHhcCCchHHHHHHHHH-HHCCCc
Q 037236 784 NIYAGSEKWDDVRMMRQRM-KERGLQ 808 (953)
Q Consensus 784 ~~y~~~g~~~~a~~~~~~m-~~~~~~ 808 (953)
.+|...|++++|...++.. ...|+.
T Consensus 719 ~~~~~~G~~~~A~~~y~~Al~~~~~~ 744 (1157)
T PRK11447 719 RFEAQTGQPQQALETYKDAMVASGIT 744 (1157)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhcCCC
Confidence 9999999999999965544 445554
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=4.8e-23 Score=258.14 Aligned_cols=636 Identities=9% Similarity=0.025 Sum_probs=355.9
Q ss_pred CCCCCcccHHHHHHHHHhcCCCHHHHHHHHHHhhc-CCCChhHH----------------HHHHHHhccCCChhHHHHHH
Q 037236 23 NASTEGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEAT----------------GVLLQACGHEKDIEIGKRVH 85 (953)
Q Consensus 23 ~~~~~~~~~~~~i~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~----------------~~ll~~~~~~~~~~~a~~~~ 85 (953)
..+.++..+..++..+...| ++++|...++++.+ .|.+.... ..+.+.+...|++++|.+.+
T Consensus 57 ~~p~~p~~~~~~~~~~l~~g-~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~ 135 (1157)
T PRK11447 57 IDPNNPDVIAARFRLLLRQG-DSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASY 135 (1157)
T ss_pred cCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHH
Confidence 34556778889999999999 99999999999998 44443322 22234566778888888888
Q ss_pred HHHhhhcCCCCCchhh-hHHHHHHHhcCChhhHHHHhhcCCC--C-CchhHHHHHHHHhcCCChhhHHHHHHHhHhcCCC
Q 037236 86 ELISASTQFSNDFIIN-TRLITMYSLCGFPLDSRRVFDSLKT--R-NLFQWNALVSGFTKNELYPDVLSIFVELLSDTEL 161 (953)
Q Consensus 86 ~~~~~~~~~~~~~~~~-~~Li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~ 161 (953)
.++. ... +++.... ..+.......|++++|++.|+++.. | +...+..+...+...|++++|+..|+++.. ..
T Consensus 136 ~~~l-~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~-~~- 211 (1157)
T PRK11447 136 DKLF-NGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAK-SP- 211 (1157)
T ss_pred HHHc-cCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhh-CC-
Confidence 8776 332 3333211 1111122235778888888887753 3 334667777777778888888888887755 21
Q ss_pred CCCcccHHHHHHHhhcCCChhhHhHHHHHHHHhCCCCC-hhHHHHHHHHhhccCChHHHHHHhccCCC----CCeecHHH
Q 037236 162 KPDNFTFPCVIKACGGIADVSFGSGVHGMAAKMGLIGD-VFVSNALIAMYGKCAFVEEMVKLFEVMPE----RNLVSWNS 236 (953)
Q Consensus 162 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~f~~m~~----~~~~~~~~ 236 (953)
+. +...+..++..+...+..++ ...+...+..+-....++.|...++.+.. |+.. ...
T Consensus 212 -~~---------------~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~~ 274 (1157)
T PRK11447 212 -AG---------------RDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-ARA 274 (1157)
T ss_pred -Cc---------------hHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-HHH
Confidence 11 00111111121111111111 11222223333332334444444443221 1111 112
Q ss_pred HHHHHHcCCCchHHHHHHHHhhhccCCCCCChhhHHHHHHhhhcCCCchHHHHHHHHHHHhCCCCC-chHHHHHHHhhHh
Q 037236 237 IICGSSENGFSCESFDLLIKMMGCEEGFIPDVATVVTVLPVCAGEGNVDLGILVHGLAVKLGLTRE-LMVNNALVDMYAK 315 (953)
Q Consensus 237 li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~ 315 (953)
....+...|++++|+..|++. ... -+.+...+..+..++.+.|++++|...+...++...... ...+..++..
T Consensus 275 ~G~~~~~~g~~~~A~~~l~~a--L~~-~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~--- 348 (1157)
T PRK11447 275 QGLAAVDSGQGGKAIPELQQA--VRA-NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKV--- 348 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHH--HHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHh---
Confidence 234455666666777666666 221 122445555555666666666666666666655432111 1111111100
Q ss_pred cCChhHHHHHHhcCCCCCcccH--HHHHHHHHcCCChhHHHHHHHHHHhccCCCCCchhhHHHHHHHhccccchHHHHHH
Q 037236 316 CGFLSEAQILFDKNNNKNVVSW--NTIIGAFSMAGDVCGTFDLLRKMQMKEEEMKPNEVTVLNVLTSCSEKSELLSLKEL 393 (953)
Q Consensus 316 ~g~~~~A~~~f~~~~~~d~~~~--~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~p~~~t~~~ll~~~~~~~~~~~a~~i 393 (953)
...| ......+.+.|++++|+..|++..... +.+...+..+-..+...|+++.|.+.
T Consensus 349 ------------------~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~---P~~~~a~~~Lg~~~~~~g~~~eA~~~ 407 (1157)
T PRK11447 349 ------------------NRYWLLIQQGDAALKANNLAQAERLYQQARQVD---NTDSYAVLGLGDVAMARKDYAAAERY 407 (1157)
T ss_pred ------------------hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 0000 011223344445555555555444421 11122222233333333344444444
Q ss_pred HHHHHHcCCCCchhHHHHHHHHHHhcCCcccHHHHhccCCCCC------------hhhHHHHHHHHHhcCChHHHHHHHH
Q 037236 394 HGYSLRHGFDNDELVANAFVVAYAKCGSEISAENVFHGMDSRT------------VSSWNALICGYAQNGDHLKALDYFL 461 (953)
Q Consensus 394 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~ 461 (953)
+..+++.. +.+...+..+...|. .++.++|...++.+.... ...+..+...+...|++++|++.|+
T Consensus 408 y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~ 485 (1157)
T PRK11447 408 YQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQR 485 (1157)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 33333321 112223333334442 234455555554443211 1123344455555666666666666
Q ss_pred HhhhCCCCCCcchHHHHHHhhccccccchhhHHHHHHHHhCCCCchhhHhhHHHHHHhcCChhHHHHHHHhccc--C-Cc
Q 037236 462 QMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMED--K-SL 538 (953)
Q Consensus 462 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~ 538 (953)
+.++. .|+ +..++..+...|.+.|++++|...|+++.+ | +.
T Consensus 486 ~Al~~--~P~----------------------------------~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~ 529 (1157)
T PRK11447 486 QRLAL--DPG----------------------------------SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDP 529 (1157)
T ss_pred HHHHh--CCC----------------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence 55543 222 233444556667777777777777776543 2 33
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHH
Q 037236 539 VSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMY 618 (953)
Q Consensus 539 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 618 (953)
..+..+...+.+.++.++|+..++.+......++...+.. .+ .......+.+.+
T Consensus 530 ~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~-------------------~l-------~~~~~l~~a~~l 583 (1157)
T PRK11447 530 EQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQ-------------------RL-------QSDQVLETANRL 583 (1157)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHH-------------------HH-------hhhHHHHHHHHH
Confidence 3444444455667777777777776543221111110000 00 001223456778
Q ss_pred HhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 037236 619 AKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYF 697 (953)
Q Consensus 619 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~ 697 (953)
...|+.++|..+++. .+.+...+..+...+...|++++|++.|++.++ ..| +...+..++..+...|++++|++.+
T Consensus 584 ~~~G~~~eA~~~l~~-~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~--~~P~~~~a~~~la~~~~~~g~~~eA~~~l 660 (1157)
T PRK11447 584 RDSGKEAEAEALLRQ-QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT--REPGNADARLGLIEVDIAQGDLAAARAQL 660 (1157)
T ss_pred HHCCCHHHHHHHHHh-CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 889999999999984 344666778888999999999999999999999 467 6778899999999999999999999
Q ss_pred HHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CC-------ChhHHHHHHHHHHhcCChhHHHHHHHHH
Q 037236 698 SQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE-EA-------DAGIWSSLLRSCRTYGALKMGEKVAKTL 768 (953)
Q Consensus 698 ~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~-------~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 768 (953)
+...+ ..|+ ...+..+..++.+.|++++|.++++++.. .| +..++..+...+...|+.++|...++++
T Consensus 661 ~~ll~---~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~A 737 (1157)
T PRK11447 661 AKLPA---TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDA 737 (1157)
T ss_pred HHHhc---cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 98754 4555 56677788899999999999999998753 11 2246666778889999999999999999
Q ss_pred hc---cCCCCcc
Q 037236 769 LE---LEPDKAE 777 (953)
Q Consensus 769 ~~---l~p~~~~ 777 (953)
+. +.|..+.
T Consensus 738 l~~~~~~~~~p~ 749 (1157)
T PRK11447 738 MVASGITPTRPQ 749 (1157)
T ss_pred HhhcCCCCCCCC
Confidence 85 4444444
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=2.5e-22 Score=239.21 Aligned_cols=662 Identities=10% Similarity=0.001 Sum_probs=413.8
Q ss_pred cHHHHHHH--HHhcCCCHHHHHHHHHHhhc-CCCChhHHHHHHHHhccCCChhHHHHHHHHHhhhcCCCCCchhhhHHHH
Q 037236 30 HFLQEITT--LCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELISASTQFSNDFIINTRLIT 106 (953)
Q Consensus 30 ~~~~~i~~--~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Li~ 106 (953)
++..+..+ +...| ++++|+..|+++.+ .|.+..++..|.+.+...|+.++|....++.+ +.. +.|...+..|
T Consensus 44 ~~~~f~~a~~~~~~G-d~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv-~ld-P~n~~~~~~L-- 118 (987)
T PRK09782 44 IYPRLDKALKAQKNN-DEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQL-KRH-PGDARLERSL-- 118 (987)
T ss_pred HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hcC-cccHHHHHHH--
Confidence 34444444 33348 99999999999999 77778889999999999999999999999998 442 4555555544
Q ss_pred HHHhcCChhhHHHHhhcCCC--CC-chhHHHHHHH--------HhcCCChhhHHHHHHHhHhcCCCCCCcccHHHH-HHH
Q 037236 107 MYSLCGFPLDSRRVFDSLKT--RN-LFQWNALVSG--------FTKNELYPDVLSIFVELLSDTELKPDNFTFPCV-IKA 174 (953)
Q Consensus 107 ~y~~~g~~~~A~~~f~~~~~--~~-~~~~~~li~~--------~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~l-l~~ 174 (953)
+..++.++|..+++++.. |+ ...+..+... |.+. ++|...++ ... ....|+..+.... .+.
T Consensus 119 --a~i~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~-~~~~~~~~vL~L~~~rl 191 (987)
T PRK09782 119 --AAIPVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DAT-FAASPEGKTLRTDLLQR 191 (987)
T ss_pred --HHhccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-Hhh-hCCCCCcHHHHHHHHHH
Confidence 222999999999999853 32 3344444443 6665 44554444 322 3344445555555 889
Q ss_pred hhcCCChhhHhHHHHHHHHhCCCCChhHHHHHHHHhhc-cCChHHHHHHhccCCCCCeecHHHHHHHHHcCCCchHHHHH
Q 037236 175 CGGIADVSFGSGVHGMAAKMGLIGDVFVSNALIAMYGK-CAFVEEMVKLFEVMPERNLVSWNSIICGSSENGFSCESFDL 253 (953)
Q Consensus 175 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l 253 (953)
+...++++.+...+..+.+.+.. +..-...|-.+|.. .++ +.|..+++...+.|...+..+...|.+.|+.++|.++
T Consensus 192 Y~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~ 269 (987)
T PRK09782 192 AIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHY 269 (987)
T ss_pred HHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999998754 35556667778887 367 8888888765556788899999999999999999999
Q ss_pred HHHhhhccCC-CCCChhhHHHHHHhhhcCCCchH-HHHHHHHHHHhCCCCC-chHHHHHHHhhHhcCChhHHHHHHhcCC
Q 037236 254 LIKMMGCEEG-FIPDVATVVTVLPVCAGEGNVDL-GILVHGLAVKLGLTRE-LMVNNALVDMYAKCGFLSEAQILFDKNN 330 (953)
Q Consensus 254 ~~~m~~~~~g-~~p~~~t~~~ll~~~~~~~~~~~-a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~f~~~~ 330 (953)
++++ ...- -.|...++-.++. +.+.... +..-+. + .+.++ ....-.++..+.+.++++.|+++.+ ..
T Consensus 270 L~~~--~~~~~~~~~~~~~~~~l~---r~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 339 (987)
T PRK09782 270 LIEN--KPLFTTDAQEKSWLYLLS---KYSANPVQALANYT---V-QFADNRQYVVGATLPVLLKEGQYDAAQKLLA-TL 339 (987)
T ss_pred HHhC--cccccCCCccHHHHHHHH---hccCchhhhccchh---h-hhHHHHHHHHHHHHHHHHhccHHHHHHHHhc-CC
Confidence 9999 4433 3366666655543 3333321 111010 0 01111 1223345788899999998887754 33
Q ss_pred CCCcccHHHHHHHHHcCCChhHHHHHHHHHHhccCCCCCchhhHHHHHHHhccccchHHHHHHHHHHHHc-C-CCCchhH
Q 037236 331 NKNVVSWNTIIGAFSMAGDVCGTFDLLRKMQMKEEEMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLRH-G-FDNDELV 408 (953)
Q Consensus 331 ~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~-g-~~~~~~~ 408 (953)
..+.. .-.-..+....+...++...++.|.+.. +-+.....-+--...+.|+.++|.+++...... + -..+...
T Consensus 340 ~~~~~-~~~r~~~~~~~~~~~~~~~~~~~~y~~~---~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l 415 (987)
T PRK09782 340 PANEM-LEERYAVSVATRNKAEALRLARLLYQQE---PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTL 415 (987)
T ss_pred CcchH-HHHHHhhccccCchhHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHH
Confidence 22331 1111122234466777777777776542 112222222222233455566666666555442 1 1123334
Q ss_pred HHHHHHHHHhcCCcccHHHHhcc---CCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccc
Q 037236 409 ANAFVVAYAKCGSEISAENVFHG---MDSRTVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHL 485 (953)
Q Consensus 409 ~~~li~~y~~~g~~~~A~~~f~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 485 (953)
.+-|+..|.+.+.+....++..- +..+.. +.-.|+..++...+.....
T Consensus 416 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~-------------------- 466 (987)
T PRK09782 416 MARLASLLESHPYLATPAKVAILSKPLPLAEQ---------RQWQSQLPGIADNCPAIVR-------------------- 466 (987)
T ss_pred HHHHHHHHHhCCcccchHHHHHhccccccchh---------HHHHhhhhhhhhhHHHHHH--------------------
Confidence 44555555555553333332221 111111 0011111111111111111
Q ss_pred cccchhhHHHHHHHHhCCCC--chhhHhhHHHHHHhcCChhHHHHHHHhcccCCcccHHHHHHHH--HhcCChhHHHHHH
Q 037236 486 KSLHRGKEIHGFVIRNGLEG--DSFTGISLLSLYMHCEKSSSARVLFDEMEDKSLVSWNTMIAGY--SQNKLPVEAIVLF 561 (953)
Q Consensus 486 ~~~~~a~~i~~~~~~~g~~~--~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~ 561 (953)
+.... .+ +...+..+..++.. ++.++|...|.+.....+..|+.+..++ .+.|++++|+..|
T Consensus 467 ------------al~~~-p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~ 532 (987)
T PRK09782 467 ------------LLGDM-SPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAW 532 (987)
T ss_pred ------------hcccC-CCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 00000 11 23344444444444 5555666655554432223344433333 4566666666666
Q ss_pred HHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCCCCH--
Q 037236 562 RRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKDKDV-- 639 (953)
Q Consensus 562 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-- 639 (953)
+++... .| +...+..+...+.+.|+.++|...|++....++
T Consensus 533 rka~~~--~p-----------------------------------~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~ 575 (987)
T PRK09782 533 QKISLH--DM-----------------------------------SNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGD 575 (987)
T ss_pred HHHhcc--CC-----------------------------------CcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcc
Confidence 665432 22 222234445566677777777777776653222
Q ss_pred -HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHH
Q 037236 640 -TSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVV 717 (953)
Q Consensus 640 -~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv 717 (953)
..+..+...+...|++++|+..|++.++ ..|+...+..+..++.+.|++++|...+++..+ +.|+ ...+..+.
T Consensus 576 ~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~~a~~nLG 650 (987)
T PRK09782 576 NALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALE---LEPNNSNYQAALG 650 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHH
Confidence 2222233334455899999999999888 577877888888889999999999999988876 5676 67778888
Q ss_pred HHHhhcCCHHHHHHHHHhCCC-CC-ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHH
Q 037236 718 DMLGRAGKLDDAFKLIIEMPE-EA-DAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDV 795 (953)
Q Consensus 718 ~~l~~~g~~~eA~~~~~~~~~-~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a 795 (953)
..+...|++++|++.+++... .| ++.+|..+..++...|+++.|+..++++++++|++..+....+++.....+++.|
T Consensus 651 ~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a 730 (987)
T PRK09782 651 YALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRL 730 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHH
Confidence 888899999999998887654 34 5778899999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHH
Q 037236 796 RMMRQRMKE 804 (953)
Q Consensus 796 ~~~~~~m~~ 804 (953)
.+-++..-.
T Consensus 731 ~~~~~r~~~ 739 (987)
T PRK09782 731 HEEVGRRWT 739 (987)
T ss_pred HHHHHHHhh
Confidence 886654433
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=2.4e-21 Score=230.91 Aligned_cols=618 Identities=9% Similarity=-0.022 Sum_probs=368.6
Q ss_pred hcCChhhHHHHhhcCCC--C-CchhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcccHHHHHHHhhcCCChhhHhH
Q 037236 110 LCGFPLDSRRVFDSLKT--R-NLFQWNALVSGFTKNELYPDVLSIFVELLSDTELKPDNFTFPCVIKACGGIADVSFGSG 186 (953)
Q Consensus 110 ~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 186 (953)
..|++++|...|+...+ | +...+..|.+.|...|++++|+..+++..+ ..|+...|..++... ++.+.|..
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~---ldP~n~~~~~~La~i---~~~~kA~~ 129 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLK---RHPGDARLERSLAAI---PVEVKSVT 129 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHHHHHh---ccChhHHH
Confidence 34777777777776542 3 344667777777778888888877777766 344444444444222 66666667
Q ss_pred HHHHHHHhCCCCChhHHHHHHHH--------hhccCChHHHHHHhccCCCCC--eecHHHH-HHHHHcCCCchHHHHHHH
Q 037236 187 VHGMAAKMGLIGDVFVSNALIAM--------YGKCAFVEEMVKLFEVMPERN--LVSWNSI-ICGSSENGFSCESFDLLI 255 (953)
Q Consensus 187 ~~~~~~~~g~~~~~~~~~~li~~--------~~~~g~~~~A~~~f~~m~~~~--~~~~~~l-i~~~~~~g~~~~A~~l~~ 255 (953)
+++++.+..+. +..++..+... |.+.+....|++ .+...|+ ..+.... ...|.+.|++++|++++.
T Consensus 130 ~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~ 206 (987)
T PRK09782 130 TVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYN 206 (987)
T ss_pred HHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 77777665433 23333333333 544444444443 1111222 2222222 455555555555555555
Q ss_pred HhhhccCCCCCChhhHHHHHHhhhcCCCchHHHHHHHHHHHhCCCCCchHHHHHHHhhHh-cCChhHHHHHHhcCCCCCc
Q 037236 256 KMMGCEEGFIPDVATVVTVLPVCAGEGNVDLGILVHGLAVKLGLTRELMVNNALVDMYAK-CGFLSEAQILFDKNNNKNV 334 (953)
Q Consensus 256 ~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~f~~~~~~d~ 334 (953)
++ .+.+ +.+......|-.+|.. .++ +.+..+++...+.|+
T Consensus 207 ~L-------------------------------------~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~ 247 (987)
T PRK09782 207 EA-------------------------------------RQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDP 247 (987)
T ss_pred HH-------------------------------------HhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCH
Confidence 55 4433 1122223334444444 244 555555544333455
Q ss_pred ccHHHHHHHHHcCCChhHHHHHHHHHHhccCCCCCchhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCc-hhHHHHHH
Q 037236 335 VSWNTIIGAFSMAGDVCGTFDLLRKMQMKEEEMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLRHGFDND-ELVANAFV 413 (953)
Q Consensus 335 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~-~~~~~~li 413 (953)
..+..+...|.+.|+.++|.+.++++...-. -.|+..++...+.-....... +..-+. + .+.++ ....-.++
T Consensus 248 ~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~-~~~~~~~~~~~l~r~~~~~~~--~~~~~~---~-~~~~~~~~~~~~~~ 320 (987)
T PRK09782 248 QSRITYATALAYRGEKARLQHYLIENKPLFT-TDAQEKSWLYLLSKYSANPVQ--ALANYT---V-QFADNRQYVVGATL 320 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhCccccc-CCCccHHHHHHHHhccCchhh--hccchh---h-hhHHHHHHHHHHHH
Confidence 5666666666666666666666666544321 124444444443322222100 000000 0 01111 11233446
Q ss_pred HHHHhcCCcccHHHHhccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccchhhH
Q 037236 414 VAYAKCGSEISAENVFHGMDSRTVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKE 493 (953)
Q Consensus 414 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 493 (953)
..+.+.++++.+.++.. ....+.. .-.-..+....+...++.+.++.|.... +-+....--+--.....|+.++|..
T Consensus 321 ~~~~~~~~~~~~~~~~~-~~~~~~~-~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~ 397 (987)
T PRK09782 321 PVLLKEGQYDAAQKLLA-TLPANEM-LEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAAD 397 (987)
T ss_pred HHHHhccHHHHHHHHhc-CCCcchH-HHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHH
Confidence 77778888887777644 2222221 1111122233466667777777776541 1122222222222345677777887
Q ss_pred HHHHHHHh-C-CCCchhhHhhHHHHHHhcCChhHHHHHHHh---cccCCcccHHHHHHHHHhcCChhH---HHHHHHHHH
Q 037236 494 IHGFVIRN-G-LEGDSFTGISLLSLYMHCEKSSSARVLFDE---MEDKSLVSWNTMIAGYSQNKLPVE---AIVLFRRMF 565 (953)
Q Consensus 494 i~~~~~~~-g-~~~~~~~~~~li~~y~~~g~~~~A~~~f~~---~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~ 565 (953)
++...... + -..+....+-|+..|.+.+......++..- +..+....| .|+..+ +...+....
T Consensus 398 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~al 468 (987)
T PRK09782 398 LLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQW---------QSQLPGIADNCPAIVRLL 468 (987)
T ss_pred HHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHH---------HhhhhhhhhhHHHHHHhc
Confidence 77777652 1 122445566778888888774444433322 322222111 223322 233333333
Q ss_pred HcCCCCC---hhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC--CCCHH
Q 037236 566 SIGVQPC---EISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK--DKDVT 640 (953)
Q Consensus 566 ~~g~~p~---~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~ 640 (953)
. ..|+ ...+..+-.++.. +..++|...+....... |+......+...+...|++++|...|+++. .++..
T Consensus 469 ~--~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~ 543 (987)
T PRK09782 469 G--DMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNE 543 (987)
T ss_pred c--cCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcH
Confidence 2 2233 3334444434433 67777887666665543 343333344555578999999999999876 35556
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHH
Q 037236 641 SWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDT-FTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDM 719 (953)
Q Consensus 641 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~ 719 (953)
.+..+...+...|+.++|...|++.++. .|+. ..+..+.......|++++|...+++..+ +.|+...|..+..+
T Consensus 544 a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~ 618 (987)
T PRK09782 544 DLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVARATI 618 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHH
Confidence 6778888899999999999999999985 4644 3344445556677999999999999976 67888899999999
Q ss_pred HhhcCCHHHHHHHHHhCCC-CC-ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHH
Q 037236 720 LGRAGKLDDAFKLIIEMPE-EA-DAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRM 797 (953)
Q Consensus 720 l~~~g~~~eA~~~~~~~~~-~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 797 (953)
+.+.|++++|++.+++... .| ++..+..+..++...|+.++|...++++++++|+++..+..++.+|...|++++|..
T Consensus 619 l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~ 698 (987)
T PRK09782 619 YRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQH 698 (987)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999998764 44 577888888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 037236 798 MRQRMKE 804 (953)
Q Consensus 798 ~~~~m~~ 804 (953)
.+++.-+
T Consensus 699 ~l~~Al~ 705 (987)
T PRK09782 699 YARLVID 705 (987)
T ss_pred HHHHHHh
Confidence 8777654
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=2e-20 Score=195.95 Aligned_cols=443 Identities=14% Similarity=0.160 Sum_probs=298.0
Q ss_pred HHHHHHHHcCCCchHHHHHHHHhhhccCCCCCChhhHHHHHHhhhcCCCchHHHHHHHHHHHhCCCCCchHHHHHHHhhH
Q 037236 235 NSIICGSSENGFSCESFDLLIKMMGCEEGFIPDVATVVTVLPVCAGEGNVDLGILVHGLAVKLGLTRELMVNNALVDMYA 314 (953)
Q Consensus 235 ~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 314 (953)
..+..-..+.|++.+|++.-.... .+ -+.+..+...+-..+....+++...+--...++.. +.-..+|..+.+.+-
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~--~~-d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~k 127 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVG--QE-DPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILK 127 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhh--cc-CCCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHH
Confidence 344455567788888877655441 11 11122222222222333334433332222222221 233456777888888
Q ss_pred hcCChhHHHHHHhcCCC---CCcccHHHHHHHHHcCCChhHHHHHHHHHHhccCCCCCchhhHHHHHHHhccccchHHHH
Q 037236 315 KCGFLSEAQILFDKNNN---KNVVSWNTIIGAFSMAGDVCGTFDLLRKMQMKEEEMKPNEVTVLNVLTSCSEKSELLSLK 391 (953)
Q Consensus 315 ~~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~p~~~t~~~ll~~~~~~~~~~~a~ 391 (953)
..|++++|..+++.+.+ ..+..|..+..++...|+.+.|.+.|.+.++ +.|+.+...+
T Consensus 128 erg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq----lnP~l~ca~s--------------- 188 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ----LNPDLYCARS--------------- 188 (966)
T ss_pred HhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh----cCcchhhhhc---------------
Confidence 88888888888887654 3466788888888888888888888877765 4455332221
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCCcccHHHHhccCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 037236 392 ELHGYSLRHGFDNDELVANAFVVAYAKCGSEISAENVFHGMDS--R-TVSSWNALICGYAQNGDHLKALDYFLQMTHSDL 468 (953)
Q Consensus 392 ~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 468 (953)
.+.......|++++|...+.+..+ + =.+.|+.|...+-.+|+...|+..|++.+..
T Consensus 189 -------------------~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl-- 247 (966)
T KOG4626|consen 189 -------------------DLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL-- 247 (966)
T ss_pred -------------------chhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--
Confidence 122222334455555444443322 2 2356777777777777777777777776542
Q ss_pred CCCcchHHHHHHhhccccccchhhHHHHHHHHhCCCCchhhHhhHHHHHHhcCChhHHHHHHHhccc--C-CcccHHHHH
Q 037236 469 EPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMED--K-SLVSWNTMI 545 (953)
Q Consensus 469 ~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li 545 (953)
.|+- ...|-.|...|...+.++.|...+.+... | ..+.+..|.
T Consensus 248 dP~f----------------------------------~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla 293 (966)
T KOG4626|consen 248 DPNF----------------------------------LDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLA 293 (966)
T ss_pred CCcc----------------------------------hHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceE
Confidence 2321 11233344444445555555555544321 1 234444455
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHH
Q 037236 546 AGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLE 625 (953)
Q Consensus 546 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 625 (953)
..|..+|..+-|+..+++.++. .|+ -...|+.|..++-..|++.
T Consensus 294 ~iYyeqG~ldlAI~~Ykral~~--~P~----------------------------------F~~Ay~NlanALkd~G~V~ 337 (966)
T KOG4626|consen 294 CIYYEQGLLDLAIDTYKRALEL--QPN----------------------------------FPDAYNNLANALKDKGSVT 337 (966)
T ss_pred EEEeccccHHHHHHHHHHHHhc--CCC----------------------------------chHHHhHHHHHHHhccchH
Confidence 5555556666666666555543 332 3456777788888888888
Q ss_pred HHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037236 626 QSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPD-TFTFVGILMACNHAGLVENGLKYFSQMQ 701 (953)
Q Consensus 626 ~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 701 (953)
+|...|.+.. ..-..+.+.|...|...|.+++|..+|....+ +.|. ...++.|...|-++|++++|+..+++.+
T Consensus 338 ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal 415 (966)
T KOG4626|consen 338 EAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL 415 (966)
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH
Confidence 8888888776 33456788899999999999999999999998 7885 5679999999999999999999999887
Q ss_pred HhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCC-hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcch
Q 037236 702 KLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE-EAD-AGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAEN 778 (953)
Q Consensus 702 ~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~ 778 (953)
+ |+|+ .+.|+.|...|-..|+.++|.+.+.+... .|. +...+.|...++..|++++|+..++.+++++|+.+.+
T Consensus 416 r---I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA 492 (966)
T KOG4626|consen 416 R---IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDA 492 (966)
T ss_pred h---cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchh
Confidence 5 9999 88999999999999999999999987753 554 5688999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCchHHH
Q 037236 779 YVLVSNIYAGSEKWDDVR 796 (953)
Q Consensus 779 ~~~l~~~y~~~g~~~~a~ 796 (953)
|-.|.....--..|.+-.
T Consensus 493 ~cNllh~lq~vcdw~D~d 510 (966)
T KOG4626|consen 493 YCNLLHCLQIVCDWTDYD 510 (966)
T ss_pred hhHHHHHHHHHhcccchH
Confidence 999998888888888743
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.86 E-value=4.3e-19 Score=186.12 Aligned_cols=354 Identities=14% Similarity=0.140 Sum_probs=277.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCC-CcchHHHHHHhhccccccchhhHHHHHHHHhCCCCchh-hHhhHHH
Q 037236 438 SSWNALICGYAQNGDHLKALDYFLQMTHSDLEP-DLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSF-TGISLLS 515 (953)
Q Consensus 438 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~-~~~~li~ 515 (953)
.+|..+...+-..|+.++|+.+|+.|++. +| ....|..+..++...|+.+.|.+.+.+.++.++ +.+ ..+-+..
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP--~l~ca~s~lgn 192 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNP--DLYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCc--chhhhhcchhH
Confidence 45666666677777777777777777664 33 344566666666667777777777666665432 222 2233444
Q ss_pred HHHhcCChhHHHHHHHhccc--C-CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh-hhHHHHHHHhccccchHH
Q 037236 516 LYMHCEKSSSARVLFDEMED--K-SLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCE-ISIVSILSACSQLSALRL 591 (953)
Q Consensus 516 ~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~ 591 (953)
.....|++++|...+.+..+ | -.+.|+.|...+...|+...|++.|++.... .|+- -.|..+-..+...+.++.
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchH
Confidence 55567888888888877654 3 3468999999999999999999999988764 5542 345556666666666777
Q ss_pred HHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC--CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 037236 592 GKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK--DK-DVTSWNAIIGGHGIHGYGKEAIELFEKMLAL 668 (953)
Q Consensus 592 a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 668 (953)
|...+..+...... ...++..|...|-..|.++-|+..|++.. +| -...|+.|..++-..|+..+|...|.+.+.
T Consensus 271 Avs~Y~rAl~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~- 348 (966)
T KOG4626|consen 271 AVSCYLRALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR- 348 (966)
T ss_pred HHHHHHHHHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH-
Confidence 76666655543322 45667778889999999999999999887 33 467999999999999999999999999999
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC-hhH
Q 037236 669 GHKPD-TFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMP-EEAD-AGI 744 (953)
Q Consensus 669 g~~P~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~-~~~~-~~~ 744 (953)
+.|+ ....+.|..++...|.+++|..+|....+ +.|. ....+.|...|-..|++++|+..+++.. +.|+ +..
T Consensus 349 -l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda 424 (966)
T KOG4626|consen 349 -LCPNHADAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADA 424 (966)
T ss_pred -hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHH
Confidence 6775 46789999999999999999999998865 7788 7788999999999999999999998775 4676 458
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 037236 745 WSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMK 803 (953)
Q Consensus 745 ~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 803 (953)
++.++..|...|++..|...+.+++.++|.-+.++..|+.+|..+|+..+|+.-++...
T Consensus 425 ~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aL 483 (966)
T KOG4626|consen 425 LSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTAL 483 (966)
T ss_pred HHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999655443
No 16
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.84 E-value=2.6e-16 Score=174.79 Aligned_cols=580 Identities=13% Similarity=0.082 Sum_probs=388.7
Q ss_pred hHHHHHHhccCCCCCeecHHHH-HHH--HHcCCCchHHHHHHHHhhhccCCCCCChhhHHHHHHhhhcCCCchHHHHHHH
Q 037236 216 VEEMVKLFEVMPERNLVSWNSI-ICG--SSENGFSCESFDLLIKMMGCEEGFIPDVATVVTVLPVCAGEGNVDLGILVHG 292 (953)
Q Consensus 216 ~~~A~~~f~~m~~~~~~~~~~l-i~~--~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 292 (953)
++.|...|..+.+.+..-.-.| ..+ ....|++..|+.+|..........+||... .+-.++.+.++.+.|...|.
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHH
Confidence 5777777777654222211122 222 234678888888888853345666666542 22345567788888888888
Q ss_pred HHHHhCCCCCchHHHHHHHhhHhc---CChhHHHHHHhcC---CCCCcccHHHHHHHHHcCCChhHHHHHHHHHHhccCC
Q 037236 293 LAVKLGLTRELMVNNALVDMYAKC---GFLSEAQILFDKN---NNKNVVSWNTIIGAFSMAGDVCGTFDLLRKMQMKEEE 366 (953)
Q Consensus 293 ~~~~~g~~~~~~~~~~li~~~~~~---g~~~~A~~~f~~~---~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 366 (953)
.+++... .++..+-.|.-.-... ..+..+..++.+. ...|++..+.|...|.-.|++..++.+...+......
T Consensus 224 ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~ 302 (1018)
T KOG2002|consen 224 RALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN 302 (1018)
T ss_pred HHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh
Confidence 8776542 2222222221111122 2234444444432 2357788888888888888888888888887654211
Q ss_pred CCCchhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCcccHHHHhccCCCC---ChhhHHHH
Q 037236 367 MKPNEVTVLNVLTSCSEKSELLSLKELHGYSLRHGFDNDELVANAFVVAYAKCGSEISAENVFHGMDSR---TVSSWNAL 443 (953)
Q Consensus 367 ~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~l 443 (953)
-..-...|-.+-+++=..|+++.|...+-...+..-...+..+-.|..+|.+.|+++.|...|+.+... +..+...+
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iL 382 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKIL 382 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 112234577777788888888888888877776543333344556778999999999999999887532 44566666
Q ss_pred HHHHHhcC----ChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccchhhHHHHH----HHHhCCCCchhhHhhHHH
Q 037236 444 ICGYAQNG----DHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHGF----VIRNGLEGDSFTGISLLS 515 (953)
Q Consensus 444 i~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~----~~~~g~~~~~~~~~~li~ 515 (953)
...|...+ ..+.|..++.+..+.- +.|...|..+-..+... +......++.. +...+-.+.+.+.|.+..
T Consensus 383 G~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvas 460 (1018)
T KOG2002|consen 383 GCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVAS 460 (1018)
T ss_pred HhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHH
Confidence 66666665 4455666665555432 33455555555444333 33333444443 345566678889999999
Q ss_pred HHHhcCChhHHHHHHHhcccC-------Ccc------cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 037236 516 LYMHCEKSSSARVLFDEMEDK-------SLV------SWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSA 582 (953)
Q Consensus 516 ~y~~~g~~~~A~~~f~~~~~~-------~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 582 (953)
.+...|++++|...|++.... |.. +-..+...+-..++.+.|.+.+..+.+. .|+.+.--.=+.+
T Consensus 461 lhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ 538 (1018)
T KOG2002|consen 461 LHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGC 538 (1018)
T ss_pred HHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhH
Confidence 999999999999999876532 221 1222445566677899999999999876 5655433222222
Q ss_pred hc-cccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC-----CCCHHHHHHHHHHHHh-----
Q 037236 583 CS-QLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK-----DKDVTSWNAIIGGHGI----- 651 (953)
Q Consensus 583 ~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~----- 651 (953)
.+ ..+.+.++...+..+.... ..++.+++-+.+.|.+...+..|.+-|+.+. .+|+.+.-+|.+.|.+
T Consensus 539 ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~ 617 (1018)
T KOG2002|consen 539 MARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNP 617 (1018)
T ss_pred HHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhccc
Confidence 22 2345667777776666543 3367777778888988888888888666554 3466666666664432
Q ss_pred -------cCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhc
Q 037236 652 -------HGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRA 723 (953)
Q Consensus 652 -------~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~ 723 (953)
.+..++|+++|.+.+. ..| |...-+.+.-.+++.|++.+|..+|.+..+... ....+|-.+..+|..+
T Consensus 618 ~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~--~~~dv~lNlah~~~e~ 693 (1018)
T KOG2002|consen 618 SRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS--DFEDVWLNLAHCYVEQ 693 (1018)
T ss_pred ccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh--hCCceeeeHHHHHHHH
Confidence 2457889999999988 577 888888999999999999999999999976433 3356788899999999
Q ss_pred CCHHHHHHHHHhCCC----CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHH-------------
Q 037236 724 GKLDDAFKLIIEMPE----EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIY------------- 786 (953)
Q Consensus 724 g~~~eA~~~~~~~~~----~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y------------- 786 (953)
|++-.|+++|+.... +.++.+.+.|..++...|.+.++...+..++.+.|.|+...+.++-+.
T Consensus 694 ~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~ 773 (1018)
T KOG2002|consen 694 GQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKR 773 (1018)
T ss_pred HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccc
Confidence 999999999986642 467889999999999999999999999999999999998877666643
Q ss_pred ------HhcCCchHHHHHHHHHHHCCC
Q 037236 787 ------AGSEKWDDVRMMRQRMKERGL 807 (953)
Q Consensus 787 ------~~~g~~~~a~~~~~~m~~~~~ 807 (953)
..-+..++|.+++..|...+-
T Consensus 774 t~eev~~a~~~le~a~r~F~~ls~~~d 800 (1018)
T KOG2002|consen 774 TLEEVLEAVKELEEARRLFTELSKNGD 800 (1018)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 344556777777777776543
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.81 E-value=2e-16 Score=186.39 Aligned_cols=247 Identities=15% Similarity=0.117 Sum_probs=185.9
Q ss_pred CChhHHHHHHHHHHHcC-CCCCh-hhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHH
Q 037236 552 KLPVEAIVLFRRMFSIG-VQPCE-ISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRR 629 (953)
Q Consensus 552 g~~~~A~~~~~~m~~~g-~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~ 629 (953)
+++++|++.|++..+.+ ..|+. ..+..+-..+...|++++|...+..+++.... ....+..+...|...|++++|..
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHH
Confidence 45666666666665543 22322 23333344445566666666666666554321 34567778888889999999999
Q ss_pred HhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 037236 630 VFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHA 705 (953)
Q Consensus 630 ~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 705 (953)
.|++.. +.+...|..+...+...|++++|+..|++.++ ..| +...+..+..++...|++++|+..|++.++
T Consensus 387 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--- 461 (615)
T TIGR00990 387 DFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID--LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK--- 461 (615)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---
Confidence 998765 45678899999999999999999999999998 567 566778888899999999999999999876
Q ss_pred CCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCC-hhH-------HHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 037236 706 VKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE-EAD-AGI-------WSSLLRSCRTYGALKMGEKVAKTLLELEPDK 775 (953)
Q Consensus 706 ~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~~-~~~-------~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~ 775 (953)
..|+ ...|..+..+|...|++++|++.+++... .|+ ..+ ++..+..+...|++++|...++++++++|++
T Consensus 462 ~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~ 541 (615)
T TIGR00990 462 NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPEC 541 (615)
T ss_pred hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 3455 67888899999999999999999987643 332 111 1222222344699999999999999999999
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 776 AENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 776 ~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
..++..++.+|...|++++|.+.++...+
T Consensus 542 ~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 542 DIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 99999999999999999999998877654
No 18
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.79 E-value=1.4e-14 Score=161.19 Aligned_cols=559 Identities=13% Similarity=0.030 Sum_probs=280.7
Q ss_pred hhhHHHHhhcCCCCCch-hHHHHHHH--HhcCCChhhHHHHHHHhHhc-CCCCCCcccHHHHHHHhhcCCChhhHhHHHH
Q 037236 114 PLDSRRVFDSLKTRNLF-QWNALVSG--FTKNELYPDVLSIFVELLSD-TELKPDNFTFPCVIKACGGIADVSFGSGVHG 189 (953)
Q Consensus 114 ~~~A~~~f~~~~~~~~~-~~~~li~~--~~~~g~~~~a~~~~~~m~~~-~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 189 (953)
++.|.+.|..+.+.++. ....+..+ ....|++-.|+.+|...... ...+||.. -.+-..+.+.++.+.|+..|.
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHHH
Confidence 46777777665432211 11122222 23456777777777775541 12222221 122234456677777777777
Q ss_pred HHHHhCCCCChhHHHHHHHHh---hccC---ChHHHHHHhccCC---CCCeecHHHHHHHHHcCCCchHHHHHHHHhhhc
Q 037236 190 MAAKMGLIGDVFVSNALIAMY---GKCA---FVEEMVKLFEVMP---ERNLVSWNSIICGSSENGFSCESFDLLIKMMGC 260 (953)
Q Consensus 190 ~~~~~g~~~~~~~~~~li~~~---~~~g---~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 260 (953)
.+.+..+ ...++++... .... .+..+..++...- ..|++..|.|-+-|.-.|++..++.+...+...
T Consensus 224 ralqLdp----~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~ 299 (1018)
T KOG2002|consen 224 RALQLDP----TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKN 299 (1018)
T ss_pred HHHhcCh----hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 7766432 2222222211 1112 2333333333322 245666677777777777777777777776211
Q ss_pred cCCCCCChhhHHHHHHhhhcCCCchHHHHHHHHHHHhCCCCCchHHHHHHHhhHhcCChhHHHHHHhcCCCC---CcccH
Q 037236 261 EEGFIPDVATVVTVLPVCAGEGNVDLGILVHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFDKNNNK---NVVSW 337 (953)
Q Consensus 261 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---d~~~~ 337 (953)
...-..-...|-.+.+++-..|+++.|...|....+..-..-+.-+-.|..+|.+.|+++.|...|+++.+. +..+.
T Consensus 300 t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm 379 (1018)
T KOG2002|consen 300 TENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETM 379 (1018)
T ss_pred hhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHH
Confidence 111111223455666667777777777777766665532221223345667777777777777777765432 23344
Q ss_pred HHHHHHHHcCC----ChhHHHHHHHHHHhccCCCCCchhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCchhHHHHHH
Q 037236 338 NTIIGAFSMAG----DVCGTFDLLRKMQMKEEEMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLRHGFDNDELVANAFV 413 (953)
Q Consensus 338 ~~li~~~~~~g----~~~~A~~l~~~m~~~g~~~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li 413 (953)
..+...|...+ ..+.|..++.+..+. .+.|...|..+-..+... +.......+.
T Consensus 380 ~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~---~~~d~~a~l~laql~e~~-d~~~sL~~~~------------------ 437 (1018)
T KOG2002|consen 380 KILGCLYAHSAKKQEKRDKASNVLGKVLEQ---TPVDSEAWLELAQLLEQT-DPWASLDAYG------------------ 437 (1018)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHHHHHHHhc---ccccHHHHHHHHHHHHhc-ChHHHHHHHH------------------
Confidence 44444444443 334555555554442 122333333333322222 1111122111
Q ss_pred HHHHhcCCcccHHHHhcc-CCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhC---CCCCCcc------hHHHHHHhhc
Q 037236 414 VAYAKCGSEISAENVFHG-MDSRTVSSWNALICGYAQNGDHLKALDYFLQMTHS---DLEPDLF------SIGSLILACT 483 (953)
Q Consensus 414 ~~y~~~g~~~~A~~~f~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~------t~~~ll~~~~ 483 (953)
.|..++.. +....+...|.+..-+...|.+++|...|...... -..+|.. +--.+....-
T Consensus 438 ----------~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E 507 (1018)
T KOG2002|consen 438 ----------NALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLE 507 (1018)
T ss_pred ----------HHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHH
Confidence 12211111 11234445555555666666666666666655443 1122221 1112333334
Q ss_pred cccccchhhHHHHHHHHhCCCCchhhHhhHHHHHHhcCChhHHHHHHHhccc---CCcccHHHHHHHHHhcCChhHHHHH
Q 037236 484 HLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMED---KSLVSWNTMIAGYSQNKLPVEAIVL 560 (953)
Q Consensus 484 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 560 (953)
..++.+.|.+++..+++..+. -+..|--|..+-...+...+|...+....+ .|+..|+-+...|.....+..|.+-
T Consensus 508 ~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~ 586 (1018)
T KOG2002|consen 508 ELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKK 586 (1018)
T ss_pred hhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccH
Confidence 455666677777766654321 111111222122223456677777776543 4666777777777777777777776
Q ss_pred HHHHHHcC-CCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---C
Q 037236 561 FRRMFSIG-VQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---D 636 (953)
Q Consensus 561 ~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~ 636 (953)
|....+.- ..+|..+..++-+.|-.. +... ..+. -...+..++|.++|.++. +
T Consensus 587 f~~i~~~~~~~~D~YsliaLGN~~~~~------------l~~~--~rn~---------ek~kk~~~KAlq~y~kvL~~dp 643 (1018)
T KOG2002|consen 587 FETILKKTSTKTDAYSLIALGNVYIQA------------LHNP--SRNP---------EKEKKHQEKALQLYGKVLRNDP 643 (1018)
T ss_pred HHHHHhhhccCCchhHHHHhhHHHHHH------------hccc--ccCh---------HHHHHHHHHHHHHHHHHHhcCc
Confidence 66655431 234554444444432110 0000 0000 112344556666666554 3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHH
Q 037236 637 KDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACV 716 (953)
Q Consensus 637 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 716 (953)
+|...-|.+.-.++..|++.+|..+|.+.++.. .-+..+|..+...|...|++-.|++.|+...+++.-.-+.....+|
T Consensus 644 kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~L 722 (1018)
T KOG2002|consen 644 KNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYL 722 (1018)
T ss_pred chhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHH
Confidence 455555666666666666667777766666642 2234456666666666666777776666666665544456666666
Q ss_pred HHHHhhcCCHHHHHHHHHh
Q 037236 717 VDMLGRAGKLDDAFKLIIE 735 (953)
Q Consensus 717 v~~l~~~g~~~eA~~~~~~ 735 (953)
..++.++|.+.+|.+....
T Consensus 723 ara~y~~~~~~eak~~ll~ 741 (1018)
T KOG2002|consen 723 ARAWYEAGKLQEAKEALLK 741 (1018)
T ss_pred HHHHHHhhhHHHHHHHHHH
Confidence 6666666666666665443
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.79 E-value=3.9e-17 Score=182.80 Aligned_cols=291 Identities=12% Similarity=0.088 Sum_probs=210.3
Q ss_pred HHhcCChhHHHHHHHhcccC---CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC---hhhHHHHHHHhccccchH
Q 037236 517 YMHCEKSSSARVLFDEMEDK---SLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPC---EISIVSILSACSQLSALR 590 (953)
Q Consensus 517 y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~~~~~ 590 (953)
+...|++++|...|+++.+. +..+|..+...|.+.|++++|+.+++.+...+..++ ...+..+...+...|+.+
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 44556666666666665532 223455566666666666666666666655322111 123444555556666666
Q ss_pred HHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCC--CC------HHHHHHHHHHHHhcCChHHHHHHH
Q 037236 591 LGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKD--KD------VTSWNAIIGGHGIHGYGKEAIELF 662 (953)
Q Consensus 591 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~------~~~~~~li~~~~~~g~~~~A~~l~ 662 (953)
.|..++..+.+.. +.+...+..++.+|.+.|++++|.+.|+.+.. |+ ...|..++..+...|++++|+..|
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 203 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL 203 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 6666666665542 23556777888888888888888888888752 11 124566777888999999999999
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-
Q 037236 663 EKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK--LEHYACVVDMLGRAGKLDDAFKLIIEMPE- 738 (953)
Q Consensus 663 ~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~lv~~l~~~g~~~eA~~~~~~~~~- 738 (953)
+++.+. .| +..++..+...+...|++++|.++|+++.+. .|+ ...+..++.+|.+.|++++|.+.++++..
T Consensus 204 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 204 KKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999884 56 4567778888999999999999999998752 444 45678889999999999999999988754
Q ss_pred CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHh--cCCchHHHHHHHHHHHCCCccCCce
Q 037236 739 EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAG--SEKWDDVRMMRQRMKERGLQKEAGC 813 (953)
Q Consensus 739 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~--~g~~~~a~~~~~~m~~~~~~~~~~~ 813 (953)
.|+...+..++..+...|+++.|...++++++..|++......+...+.. .|+.+++..+++.|.++++++.|++
T Consensus 279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 279 YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 57777778888899999999999999999999999887544444433322 5699999999999999999988874
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.78 E-value=2.2e-15 Score=177.62 Aligned_cols=248 Identities=9% Similarity=-0.026 Sum_probs=181.2
Q ss_pred hhHhhHHHHHHhcCChhHHHHHHHhccc--C-CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhc
Q 037236 508 FTGISLLSLYMHCEKSSSARVLFDEMED--K-SLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACS 584 (953)
Q Consensus 508 ~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 584 (953)
..++.+...|...|++++|...|++..+ | +..+|..+...+...|++++|+..|++..+. .|+
T Consensus 332 ~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~p~------------ 397 (615)
T TIGR00990 332 IALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL--NSE------------ 397 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCC------------
Confidence 3445555666677777777777776653 2 2345666677777777777777777777654 333
Q ss_pred cccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHH
Q 037236 585 QLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIEL 661 (953)
Q Consensus 585 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l 661 (953)
+..++..+...|...|++++|...|++.. +.+...|..+...+.+.|++++|+..
T Consensus 398 ----------------------~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~ 455 (615)
T TIGR00990 398 ----------------------DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMAT 455 (615)
T ss_pred ----------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 45667778888888999999999998876 34567788888899999999999999
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCh-h-------HHHHHHHHHhhcCCHHHHHHH
Q 037236 662 FEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKL-E-------HYACVVDMLGRAGKLDDAFKL 732 (953)
Q Consensus 662 ~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~-------~~~~lv~~l~~~g~~~eA~~~ 732 (953)
|++.+. ..| +...+..+..++...|++++|+..|+...+ +.|+. . .++.....+...|++++|.++
T Consensus 456 ~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~ 530 (615)
T TIGR00990 456 FRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---LEKETKPMYMNVLPLINKALALFQWKQDFIEAENL 530 (615)
T ss_pred HHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 999988 467 567888889999999999999999999866 44431 1 112222334457999999999
Q ss_pred HHhCCC-CC-ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 733 IIEMPE-EA-DAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 733 ~~~~~~-~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
+++... .| +...+..++..+...|++++|...+++++++.+.....+ ....|.+|.++....++
T Consensus 531 ~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~~--------~a~~~~~a~~~~~~~~~ 596 (615)
T TIGR00990 531 CEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELV--------QAISYAEATRTQIQVQE 596 (615)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHH--------HHHHHHHHHHHHHHHHH
Confidence 988643 44 456788999999999999999999999999987654422 22345566676655554
No 21
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.78 E-value=1.3e-16 Score=178.62 Aligned_cols=292 Identities=17% Similarity=0.150 Sum_probs=207.2
Q ss_pred HHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccchhhHHHHHHHHhCCCCc---hhhHhhHHHHHHhcCC
Q 037236 446 GYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGD---SFTGISLLSLYMHCEK 522 (953)
Q Consensus 446 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~---~~~~~~li~~y~~~g~ 522 (953)
.+...|++++|+..|+++.+.+ +.+..++..+...+...|+++.|..+++.+++.+..++ ...+..+...|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3445566666666666666542 12233445555555555555555555555554322111 2356677778888888
Q ss_pred hhHHHHHHHhccc---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHH
Q 037236 523 SSSARVLFDEMED---KSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYA 599 (953)
Q Consensus 523 ~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~ 599 (953)
+++|..+|+++.+ .+..+++.++..+.+.|++++|++.|+++.+.+..++...
T Consensus 123 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------------------------ 178 (389)
T PRK11788 123 LDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE------------------------ 178 (389)
T ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH------------------------
Confidence 8888888888765 3456778888888888888888888888876542221100
Q ss_pred HHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--H
Q 037236 600 LKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPD--T 674 (953)
Q Consensus 600 ~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~--~ 674 (953)
....+..++..|.+.|++++|...|+++. +.+...+..++..|...|++++|+++|+++.+. .|+ .
T Consensus 179 -------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~ 249 (389)
T PRK11788 179 -------IAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ--DPEYLS 249 (389)
T ss_pred -------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--ChhhHH
Confidence 01234557778888999999999999876 334667888889999999999999999999984 453 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCChhHHHHHHHHHH
Q 037236 675 FTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPE-EADAGIWSSLLRSCR 753 (953)
Q Consensus 675 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~~~~~~~~ll~~~~ 753 (953)
.++..++.+|...|++++|...++++.+ ..|+...+..++..+.+.|++++|.++++++.. .|+...+..++..+.
T Consensus 250 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~---~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~ 326 (389)
T PRK11788 250 EVLPKLMECYQALGDEAEGLEFLRRALE---EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHL 326 (389)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhh
Confidence 5678889999999999999999999876 457766778889999999999999999987654 688888888887765
Q ss_pred h---cCChhHHHHHHHHHh----ccCCC
Q 037236 754 T---YGALKMGEKVAKTLL----ELEPD 774 (953)
Q Consensus 754 ~---~g~~~~a~~~~~~~~----~l~p~ 774 (953)
. +|+.+.+...+++++ +.+|+
T Consensus 327 ~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 327 AEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred hccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 3 456667666666555 45565
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.78 E-value=7.9e-16 Score=180.49 Aligned_cols=329 Identities=10% Similarity=0.016 Sum_probs=258.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccchhhHHHHHHHHhCCCCchhhHhhHHHHHH
Q 037236 439 SWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYM 518 (953)
Q Consensus 439 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~ 518 (953)
-.-.++..+.+.|++++|+.+++..+.....+ ...+..++.+....|+++.|.+.++.+.+..+. +...+..+...+.
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~ 121 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLL 121 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHH
Confidence 34456777888888888888888888764333 333444445556688888888888888877644 4556777888899
Q ss_pred hcCChhHHHHHHHhccc--C-CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHH
Q 037236 519 HCEKSSSARVLFDEMED--K-SLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKET 595 (953)
Q Consensus 519 ~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~ 595 (953)
+.|++++|...|++... | +...|..+...+.+.|++++|...++.+.... |+.......+..+...|++++|...
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~~~l~~~g~~~eA~~~ 199 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATCLSFLNKSRLPEDHDL 199 (656)
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999998764 3 45678888999999999999999999887653 3333332223446778999999999
Q ss_pred HHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHH----HHHHHHHHHHC
Q 037236 596 HCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKE----AIELFEKMLAL 668 (953)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~----A~~l~~~m~~~ 668 (953)
+..+.+....++......+...+.+.|+.++|...|++.. +.+...+..+...|...|++++ |+..|++..+
T Consensus 200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~- 278 (656)
T PRK15174 200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ- 278 (656)
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh-
Confidence 8888776544444555666788899999999999999876 4467788899999999999985 8999999998
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCChhHH
Q 037236 669 GHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE-EADAGIW 745 (953)
Q Consensus 669 g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~~~~~~ 745 (953)
..| +...+..+...+...|++++|...+++..+ +.|+ ...+..+..+|.+.|++++|++.++++.. .|+...+
T Consensus 279 -l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~ 354 (656)
T PRK15174 279 -FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA---THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKW 354 (656)
T ss_pred -hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHH
Confidence 577 566788999999999999999999999976 4566 56677789999999999999999988764 5665444
Q ss_pred H-HHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 037236 746 S-SLLRSCRTYGALKMGEKVAKTLLELEPDKA 776 (953)
Q Consensus 746 ~-~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~ 776 (953)
. .+..++...|+.+.|...++++++.+|++.
T Consensus 355 ~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 355 NRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 3 456678899999999999999999999865
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.76 E-value=2e-15 Score=181.05 Aligned_cols=362 Identities=11% Similarity=0.022 Sum_probs=223.9
Q ss_pred HHHHHHHHHHhcCCcccHHHHhccC---CCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhcc
Q 037236 408 VANAFVVAYAKCGSEISAENVFHGM---DSRTVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTH 484 (953)
Q Consensus 408 ~~~~li~~y~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 484 (953)
.+..+...+.+.|++++|..+|++. ...+...+..++..+...|++++|+..+++..+. .|+...+..+..++..
T Consensus 51 ~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~--~P~~~~~~~la~~l~~ 128 (765)
T PRK10049 51 GYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG--APDKANLLALAYVYKR 128 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 3445555555555555555555552 2223444555556666666666666666666554 2222214444444555
Q ss_pred ccccchhhHHHHHHHHhCCCCchhhHhhHHHHHHhcCChhHHHHHHHhcccCCcc--------cHHHHHHHHHhcCChhH
Q 037236 485 LKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMEDKSLV--------SWNTMIAGYSQNKLPVE 556 (953)
Q Consensus 485 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~--------~~~~li~~~~~~g~~~~ 556 (953)
.|+.+.|...+..+.+..+. +......+..++.+.|..++|.+.++.... ++. ....++..+...+
T Consensus 129 ~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~---- 202 (765)
T PRK10049 129 AGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPT---- 202 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccc----
Confidence 55555555555555554433 233333455556666666666666665553 111 0001111110000
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHhccccch---HHHHHHHHHHHHc-CCCCCcc--HHHH---HHHHHHhcCCHHHH
Q 037236 557 AIVLFRRMFSIGVQPCEISIVSILSACSQLSAL---RLGKETHCYALKA-ILTNDAF--VACS---IIDMYAKCGCLEQS 627 (953)
Q Consensus 557 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~---~~a~~~~~~~~~~-~~~~~~~--~~~~---li~~y~~~g~~~~A 627 (953)
....+.+ +.|.+.++.+.+. ...|+.. .... .+.++...|++++|
T Consensus 203 --------------------------~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA 256 (765)
T PRK10049 203 --------------------------RSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDV 256 (765)
T ss_pred --------------------------cChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHH
Confidence 0111111 3333333333322 1111111 1111 12233466899999
Q ss_pred HHHhhhcCCCC---HH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 037236 628 RRVFDRLKDKD---VT-SWNAIIGGHGIHGYGKEAIELFEKMLALGHKPD-----TFTFVGILMACNHAGLVENGLKYFS 698 (953)
Q Consensus 628 ~~~~~~~~~~~---~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~-----~~t~~~ll~a~~~~g~~~~a~~~~~ 698 (953)
...|+.+...+ +. .-..+...|...|++++|+..|+++.+. .|. ......+..++...|++++|..+++
T Consensus 257 ~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~--~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~ 334 (765)
T PRK10049 257 ISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH--PETIADLSDEELADLFYSLLESENYPGALTVTA 334 (765)
T ss_pred HHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc--CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 99999887321 11 1122466789999999999999998874 342 2446667778899999999999999
Q ss_pred HHHHhcC----------CCCC---hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHH
Q 037236 699 QMQKLHA----------VKPK---LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEK 763 (953)
Q Consensus 699 ~m~~~~~----------~~p~---~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~ 763 (953)
.+.+..+ -.|+ ...+..+..++...|++++|++.++++.. +.+...|..+...+...|+.+.|+.
T Consensus 335 ~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~ 414 (765)
T PRK10049 335 HTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAEN 414 (765)
T ss_pred HHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 8866321 1123 23456678889999999999999998754 4467899999999999999999999
Q ss_pred HHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHC
Q 037236 764 VAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKER 805 (953)
Q Consensus 764 ~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 805 (953)
.++++++++|+++..+..++..+...|+|++|..+.+.+.++
T Consensus 415 ~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 415 ELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999988888663
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.74 E-value=3.9e-15 Score=174.69 Aligned_cols=324 Identities=10% Similarity=-0.007 Sum_probs=266.1
Q ss_pred cchHHHHHHhhccccccchhhHHHHHHHHhCCCCchhhHhhHHHHHHhcCChhHHHHHHHhccc--C-CcccHHHHHHHH
Q 037236 472 LFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMED--K-SLVSWNTMIAGY 548 (953)
Q Consensus 472 ~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~ 548 (953)
......++..+.+.|+.+.|..++...+.....+....+. ++......|++++|...|+++.. | +...|..+...+
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~-l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l 120 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRR-WVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVL 120 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHH-HhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 3345567778889999999999999999887776544444 44566679999999999999875 3 456788889999
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCC-hhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHH
Q 037236 549 SQNKLPVEAIVLFRRMFSIGVQPC-EISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQS 627 (953)
Q Consensus 549 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 627 (953)
.+.|++++|+..|++..+. .|+ ...+..+..++...|+.++|...+..+......+. ..+..+ ..+.+.|++++|
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~-~a~~~~-~~l~~~g~~~eA 196 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRG-DMIATC-LSFLNKSRLPED 196 (656)
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCH-HHHHHH-HHHHHcCCHHHH
Confidence 9999999999999999875 455 45666777889999999999999988877654433 333333 347889999999
Q ss_pred HHHhhhcCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHH----HHHHHH
Q 037236 628 RRVFDRLKDK----DVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVEN----GLKYFS 698 (953)
Q Consensus 628 ~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~----a~~~~~ 698 (953)
...++.+.+. +...+..+...+...|++++|+..|+++.+. .| +...+..+..++...|++++ |...|+
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~ 274 (656)
T PRK15174 197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWR 274 (656)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Confidence 9999987632 3344555677889999999999999999984 56 56778889999999999986 899999
Q ss_pred HHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CC-ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 037236 699 QMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE-EA-DAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDK 775 (953)
Q Consensus 699 ~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~ 775 (953)
++.+ +.|+ ...+..+..+|.+.|++++|+..+++... .| ++.++..+..++...|+++.|...++++++.+|++
T Consensus 275 ~Al~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~ 351 (656)
T PRK15174 275 HALQ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVT 351 (656)
T ss_pred HHHh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 8876 5676 77889999999999999999999988754 34 56788888999999999999999999999999999
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHHHHC
Q 037236 776 AENYVLVSNIYAGSEKWDDVRMMRQRMKER 805 (953)
Q Consensus 776 ~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 805 (953)
+..+..++.+|...|++++|...++...+.
T Consensus 352 ~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 352 SKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 888888899999999999999988776554
No 25
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.73 E-value=3.8e-15 Score=163.34 Aligned_cols=263 Identities=14% Similarity=0.094 Sum_probs=140.5
Q ss_pred CCCchhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcccHHHHHHHhhcCCChhhHhHHHHHHHHhCCCCChhHHHH
Q 037236 126 TRNLFQWNALVSGFTKNELYPDVLSIFVELLSDTELKPDNFTFPCVIKACGGIADVSFGSGVHGMAAKMGLIGDVFVSNA 205 (953)
Q Consensus 126 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 205 (953)
.||.+||..+|.-|+..|+.+.|- +|..|.- ...+.+...|+.++.+....++.+.++ +|.+.+|+.
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~-ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~ 88 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEI-KSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTN 88 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhc-ccccccchhHHHHHhcccccccccCCC-----------CCchhHHHH
Confidence 345555666666666666665555 5555555 455555556666666655555555554 455666666
Q ss_pred HHHHhhccCChHHHHHHhccCCCCCeecHHHHHHHHHcCCCchHHHHHHHHhhhccCCCCCChhhHHHHHHhhhcCCCch
Q 037236 206 LIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGSSENGFSCESFDLLIKMMGCEEGFIPDVATVVTVLPVCAGEGNVD 285 (953)
Q Consensus 206 li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~ 285 (953)
|...|...||+.. |+...+ ..-.++..+..+|....-..++..+. ...+.-||..+...++ ...|-++
T Consensus 89 Ll~ayr~hGDli~----fe~veq----dLe~i~~sfs~~Gvgs~e~~fl~k~~-c~p~~lpda~n~illl---v~eglwa 156 (1088)
T KOG4318|consen 89 LLKAYRIHGDLIL----FEVVEQ----DLESINQSFSDHGVGSPERWFLMKIH-CCPHSLPDAENAILLL---VLEGLWA 156 (1088)
T ss_pred HHHHHHhccchHH----HHHHHH----HHHHHHhhhhhhccCcHHHHHHhhcc-cCcccchhHHHHHHHH---HHHHHHH
Confidence 6666666666544 221111 12223344555555555555555542 3445555554432221 1122222
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHhhHh-cCChhHHHHHHhcCCC-CCcccHHHHHHHHHcCCChhHHHHHHHHHHhc
Q 037236 286 LGILVHGLAVKLGLTRELMVNNALVDMYAK-CGFLSEAQILFDKNNN-KNVVSWNTIIGAFSMAGDVCGTFDLLRKMQMK 363 (953)
Q Consensus 286 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~f~~~~~-~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 363 (953)
.+.+++..+...... .++.. .++-... ...+++-..+.....+ ++..++.+.+..-..+|+.+.|..++.+|.+.
T Consensus 157 qllkll~~~Pvsa~~-~p~~v--fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~ 233 (1088)
T KOG4318|consen 157 QLLKLLAKVPVSAWN-APFQV--FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEK 233 (1088)
T ss_pred HHHHHHhhCCccccc-chHHH--HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHc
Confidence 222222222111100 00000 1111111 1122333333333333 67777777777777788888888888888887
Q ss_pred cCCCCCchhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCC
Q 037236 364 EEEMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLRHGFDNDELVANAFVVAYAKCGS 421 (953)
Q Consensus 364 g~~~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~ 421 (953)
| ++.+.+-|..+|-+ .++......+..-|...|+.|+..|+...+-.+.++|.
T Consensus 234 g--fpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 234 G--FPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred C--CCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 7 77777777777655 66677777777777778888887777777666666554
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.72 E-value=5.8e-14 Score=164.66 Aligned_cols=433 Identities=11% Similarity=0.062 Sum_probs=263.2
Q ss_pred hcCCCchHHHHHHHHHHHhCCCCCchHHHHHHHhhHhcCChhHHHHHHhcCCCCCcccHHHH---HHHHHcCCChhHHHH
Q 037236 279 AGEGNVDLGILVHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFDKNNNKNVVSWNTI---IGAFSMAGDVCGTFD 355 (953)
Q Consensus 279 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~d~~~~~~l---i~~~~~~g~~~~A~~ 355 (953)
.+.|+++.|...+.++++........++ .++..+...|+.++|+..+++...|+...+..+ ...|...|++++|++
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aie 123 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALA 123 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 3555555555555555554321112233 677777777888888888887776644444333 345667788888888
Q ss_pred HHHHHHhccCCCCCchhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCcccHHHHhccCCCC
Q 037236 356 LLRKMQMKEEEMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLRHGFDNDELVANAFVVAYAKCGSEISAENVFHGMDSR 435 (953)
Q Consensus 356 l~~~m~~~g~~~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~ 435 (953)
+|+++.+. .|+ ++.++..++..|...++.++|.+.++++...
T Consensus 124 ly~kaL~~----dP~----------------------------------n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~ 165 (822)
T PRK14574 124 LWQSSLKK----DPT----------------------------------NPDLISGMIMTQADAGRGGVVLKQATELAER 165 (822)
T ss_pred HHHHHHhh----CCC----------------------------------CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc
Confidence 88888764 333 3344445566666667777777777776554
Q ss_pred ChhhHHHHHHHHHh--cCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccchhhHHHHHHHHhCCCCchhhHhhH
Q 037236 436 TVSSWNALICGYAQ--NGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISL 513 (953)
Q Consensus 436 ~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l 513 (953)
+......+..+|.. .++..+|++.++++.+. .|+. ...+..+
T Consensus 166 dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~--~P~n----------------------------------~e~~~~~ 209 (822)
T PRK14574 166 DPTVQNYMTLSYLNRATDRNYDALQASSEAVRL--APTS----------------------------------EEVLKNH 209 (822)
T ss_pred CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh--CCCC----------------------------------HHHHHHH
Confidence 43322223334443 44555577777777765 2332 2222333
Q ss_pred HHHHHhcCChhHHHHHHHhcccC-CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHH
Q 037236 514 LSLYMHCEKSSSARVLFDEMEDK-SLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLG 592 (953)
Q Consensus 514 i~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 592 (953)
+....+.|-...|.++..+-+.- +...+.-+ . .+.|.+ +.+.+..|+..- -.+..-.+.+
T Consensus 210 ~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l-~-------~~~~a~----~vr~a~~~~~~~-------~~r~~~~d~a 270 (822)
T PRK14574 210 LEILQRNRIVEPALRLAKENPNLVSAEHYRQL-E-------RDAAAE----QVRMAVLPTRSE-------TERFDIADKA 270 (822)
T ss_pred HHHHHHcCCcHHHHHHHHhCccccCHHHHHHH-H-------HHHHHH----HHhhcccccccc-------hhhHHHHHHH
Confidence 33444444444555444433310 00000000 0 000110 111111110000 0000011222
Q ss_pred HHHHHHHHHc-CCCCCc-cH-HHH---HHHHHHhcCCHHHHHHHhhhcCCC----CHHHHHHHHHHHHhcCChHHHHHHH
Q 037236 593 KETHCYALKA-ILTNDA-FV-ACS---IIDMYAKCGCLEQSRRVFDRLKDK----DVTSWNAIIGGHGIHGYGKEAIELF 662 (953)
Q Consensus 593 ~~~~~~~~~~-~~~~~~-~~-~~~---li~~y~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~ 662 (953)
..-.+.+... +-.|.. .. ..+ .+-++.+.|++.++.+.|+.+..+ -..+-.++..+|...+++++|+.+|
T Consensus 271 la~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~ 350 (822)
T PRK14574 271 LADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPIL 350 (822)
T ss_pred HHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 2222222221 111111 11 122 234566788899999999988832 2235566888899999999999999
Q ss_pred HHHHHCCC----CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC------------CCCC-hhHHHHHHHHHhhcC
Q 037236 663 EKMLALGH----KP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHA------------VKPK-LEHYACVVDMLGRAG 724 (953)
Q Consensus 663 ~~m~~~g~----~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~------------~~p~-~~~~~~lv~~l~~~g 724 (953)
+++..... .| +......|..++..++++++|..+++.+.+... -.|| ...+..++..+.-.|
T Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~g 430 (822)
T PRK14574 351 SSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALN 430 (822)
T ss_pred HHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcC
Confidence 99876421 12 333356788899999999999999999965222 1223 445566788889999
Q ss_pred CHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 037236 725 KLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRM 802 (953)
Q Consensus 725 ~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 802 (953)
++.+|++.++++.. +-|..++..+...++..|++..|+..++.+..++|++...+..++..+.+.|+|.+|.++.+.+
T Consensus 431 dl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l 510 (822)
T PRK14574 431 DLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDV 510 (822)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 99999999998864 4578899999999999999999999999999999999999999999999999999999988777
Q ss_pred HHC
Q 037236 803 KER 805 (953)
Q Consensus 803 ~~~ 805 (953)
.+.
T Consensus 511 ~~~ 513 (822)
T PRK14574 511 ISR 513 (822)
T ss_pred Hhh
Confidence 654
No 27
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.72 E-value=2e-14 Score=172.60 Aligned_cols=163 Identities=8% Similarity=-0.026 Sum_probs=123.5
Q ss_pred HHHHHHhcCCHHHHHHHhhhcCCCC-------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-----------CCCCH-
Q 037236 614 IIDMYAKCGCLEQSRRVFDRLKDKD-------VTSWNAIIGGHGIHGYGKEAIELFEKMLALG-----------HKPDT- 674 (953)
Q Consensus 614 li~~y~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----------~~P~~- 674 (953)
+...|...|++++|...|+++...+ ...+..+..++...|++++|+++++++.+.. -.|+.
T Consensus 278 la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~ 357 (765)
T PRK10049 278 VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDD 357 (765)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCch
Confidence 3556777777777777777764211 2345556667788888888888888887742 12332
Q ss_pred --HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCC-hhHHHHHH
Q 037236 675 --FTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE-EAD-AGIWSSLL 749 (953)
Q Consensus 675 --~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~~-~~~~~~ll 749 (953)
..+..+...+...|+.++|+..++++.. ..|+ ...+..+..++.+.|+.++|++.+++... .|+ ...+..++
T Consensus 358 ~~~a~~~~a~~l~~~g~~~eA~~~l~~al~---~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a 434 (765)
T PRK10049 358 WLQGQSLLSQVAKYSNDLPQAEMRARELAY---NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQA 434 (765)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Confidence 2455677788899999999999999876 3455 67888899999999999999999988764 454 66777777
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCCcchH
Q 037236 750 RSCRTYGALKMGEKVAKTLLELEPDKAENY 779 (953)
Q Consensus 750 ~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~ 779 (953)
..+...|+++.|+..++++++.+|+++.+.
T Consensus 435 ~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 435 WTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 788889999999999999999999998643
No 28
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.69 E-value=1.1e-13 Score=152.19 Aligned_cols=686 Identities=10% Similarity=0.002 Sum_probs=371.0
Q ss_pred CCCChhHHHHHHHHhccCCChhHHHHHHHHHhhhcCCCCCchhhhHHHHHHHhcCChhhHHHHhhcCCCCCchhHHHHHH
Q 037236 58 NADLKEATGVLLQACGHEKDIEIGKRVHELISASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVS 137 (953)
Q Consensus 58 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~ 137 (953)
+.|+..||.++|..|+..|+.+.|- ++..|. ...++....+++.++....+.++.+.|. +|-..+|+.|..
T Consensus 21 i~PnRvtyqsLiarYc~~gdieaat-if~fm~-~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~aDtyt~Ll~ 91 (1088)
T KOG4318|consen 21 ILPNRVTYQSLIARYCTKGDIEAAT-IFPFME-IKSLPVREGVFRGLVASHKEANDAENPK-------EPLADTYTNLLK 91 (1088)
T ss_pred CCCchhhHHHHHHHHcccCCCcccc-chhhhh-cccccccchhHHHHHhcccccccccCCC-------CCchhHHHHHHH
Confidence 5677788888888888888877777 777776 6667777777888887777777766664 566678888888
Q ss_pred HHhcCCChhh---HHHHHHHhHh---cCCCCCCcccHHHHHHHhhcCC-Chhh------HhHHHHHHHHhCC-CCChhHH
Q 037236 138 GFTKNELYPD---VLSIFVELLS---DTELKPDNFTFPCVIKACGGIA-DVSF------GSGVHGMAAKMGL-IGDVFVS 203 (953)
Q Consensus 138 ~~~~~g~~~~---a~~~~~~m~~---~~g~~p~~~~~~~ll~~~~~~~-~~~~------a~~~~~~~~~~g~-~~~~~~~ 203 (953)
+|.++|+... ..+.+..... ..|+.....-|...+++|...- +... -+.++...++.+. .|...-+
T Consensus 92 ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~ 171 (1088)
T KOG4318|consen 92 AYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWN 171 (1088)
T ss_pred HHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCccccc
Confidence 8888887643 2221111111 0222222222222222221110 1000 1112222222221 1111111
Q ss_pred HHH---HHHhh-ccCChHHHHHHhccCCC-CCeecHHHHHHHHHcCCCchHHHHHHHHhhhccCCCCCChhhHHHHHHhh
Q 037236 204 NAL---IAMYG-KCAFVEEMVKLFEVMPE-RNLVSWNSIICGSSENGFSCESFDLLIKMMGCEEGFIPDVATVVTVLPVC 278 (953)
Q Consensus 204 ~~l---i~~~~-~~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~ 278 (953)
+.. +.-.. ....+++-........+ ++..++.+++.+-.-+|+.+-|..++..| ++.|.+.+.+-|-.+|-+
T Consensus 172 ~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~em--ke~gfpir~HyFwpLl~g- 248 (1088)
T KOG4318|consen 172 APFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEM--KEKGFPIRAHYFWPLLLG- 248 (1088)
T ss_pred chHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHH--HHcCCCcccccchhhhhc-
Confidence 100 11111 11223333333333333 78889999999999999999999999999 899999998888777755
Q ss_pred hcCCCchHHHHHHHHHHHhCCCCCchHHHHHHHhhHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHcCC-----C----
Q 037236 279 AGEGNVDLGILVHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFDKNNNKNVVSWNTIIGAFSMAG-----D---- 349 (953)
Q Consensus 279 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g-----~---- 349 (953)
.++......++.-|...|+.|+..|+...+-.+.+.|....+... . +....+++-...-.-.| +
T Consensus 249 --~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~----s-q~~hg~tAavrsaa~rg~~a~k~l~~n 321 (1088)
T KOG4318|consen 249 --INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEG----S-QLAHGFTAAVRSAACRGLLANKRLRQN 321 (1088)
T ss_pred --CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccc----c-chhhhhhHHHHHHHhcccHhHHHHHHH
Confidence 788888889999999999999999998877777776653333222 1 11111222111111122 1
Q ss_pred -hhHHHHHHHHHHhccCCCCCchhhHHHHHHHhccccchHHHHHHHHHHHHcCCC---CchhHHHHHHHHHHhcCCcccH
Q 037236 350 -VCGTFDLLRKMQMKEEEMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLRHGFD---NDELVANAFVVAYAKCGSEISA 425 (953)
Q Consensus 350 -~~~A~~l~~~m~~~g~~~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~---~~~~~~~~li~~y~~~g~~~~A 425 (953)
..-.+..+.+..-.|....| ..|..... ....|.-+...++-+.+..--.. .++..+..++
T Consensus 322 l~~~v~~s~k~~fLlg~d~~~--aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~l------------ 386 (1088)
T KOG4318|consen 322 LRKSVIGSTKKLFLLGTDILE--AIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALL------------ 386 (1088)
T ss_pred HHHHHHHHhhHHHHhccccch--HHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHH------------
Confidence 11112222222222211122 11211111 11134444444444443221111 1122233333
Q ss_pred HHHhccCCCCCh-hhHH--H------------HHHHHHhcCChHHHHHHHHHhhhCCC----CC-------CcchHHHHH
Q 037236 426 ENVFHGMDSRTV-SSWN--A------------LICGYAQNGDHLKALDYFLQMTHSDL----EP-------DLFSIGSLI 479 (953)
Q Consensus 426 ~~~f~~~~~~~~-~~~~--~------------li~~~~~~g~~~~A~~~~~~m~~~g~----~p-------~~~t~~~ll 479 (953)
.+.|.+...+.. ..++ . .+.-+...-+...+++-+..+..... .| -...-+.++
T Consensus 387 rqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~ 466 (1088)
T KOG4318|consen 387 RQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLH 466 (1088)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHH
Confidence 233333332211 1111 0 01111111122222222222111100 00 011123334
Q ss_pred HhhccccccchhhHHHHHHHHhCCCCchhhHhhHHHHHHhcCChhHHHHHHHhcccCCc------ccHHHHHHHHHhcCC
Q 037236 480 LACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMEDKSL------VSWNTMIAGYSQNKL 553 (953)
Q Consensus 480 ~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~------~~~~~li~~~~~~g~ 553 (953)
..|.+.-+..+++..-+.....-+ ...|..||+........+.|..+.+++..+|. .-+..+...+.+.+.
T Consensus 467 l~l~se~n~lK~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~ 543 (1088)
T KOG4318|consen 467 LTLNSEYNKLKILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAI 543 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHH
Confidence 444444444444432222222111 25688999999999999999999999987654 357788888999999
Q ss_pred hhHHHHHHHHHHHcCCCCC--hhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHh
Q 037236 554 PVEAIVLFRRMFSIGVQPC--EISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVF 631 (953)
Q Consensus 554 ~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~ 631 (953)
...+..++.+|.+.-..-+ ..++-.+++..+..|..+.-++.++.+...|+.-+ .-++....+.++...|.+++
T Consensus 544 l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ea~ 619 (1088)
T KOG4318|consen 544 LYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQEAP 619 (1088)
T ss_pred HHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhhhcc
Confidence 9999999999987432222 45666778888888999999999999988876542 33444556778888888887
Q ss_pred hhcC---CCCHHHHHHHHHHHHh--cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH----------
Q 037236 632 DRLK---DKDVTSWNAIIGGHGI--HGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKY---------- 696 (953)
Q Consensus 632 ~~~~---~~~~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~---------- 696 (953)
+... ++.+.....+.+.+.+ ..+++++..+-.... .|.+.|++.++.++
T Consensus 620 e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq----------------~f~k~g~~~~a~di~etpG~r~r~ 683 (1088)
T KOG4318|consen 620 EPEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQ----------------KFEKLGSCVDAGDITETPGVRCRN 683 (1088)
T ss_pred hHHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhH----------------HHHhcccccchhhccccCcccccC
Confidence 7654 2222222222222111 112222222211111 12333333333322
Q ss_pred -----------------HHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcC---
Q 037236 697 -----------------FSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSCRTYG--- 756 (953)
Q Consensus 697 -----------------~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~~~g--- 756 (953)
.+.+. +..+..-|+..|.+.|+++.|..++.+++..|+.....-|...++.+.
T Consensus 684 ~RDr~~de~e~~~lEll~elt~-------~lg~~dRLL~sy~~~g~~erA~glwnK~QV~k~~~~l~~LAsIlr~~n~ev 756 (1088)
T KOG4318|consen 684 GRDRDTDEGEIVPLELLLELTH-------ELGKNDRLLQSYLEEGRIERASGLWNKDQVSKSPMKLFHLASILRRMNEEV 756 (1088)
T ss_pred CCccccccCccccHHHHHHHHh-------HhHHHHHHHHHHHhhhHHHHHHhHHhhCcCCcchHHHHHHHHHHHhhchhc
Confidence 22221 112334478899999999999999999998888888888888887765
Q ss_pred ChhHHHHHHHHHhccCCCCcchHHHHHH--HHHhcCCch-HHHHHHHHHHHCCC
Q 037236 757 ALKMGEKVAKTLLELEPDKAENYVLVSN--IYAGSEKWD-DVRMMRQRMKERGL 807 (953)
Q Consensus 757 ~~~~a~~~~~~~~~l~p~~~~~~~~l~~--~y~~~g~~~-~a~~~~~~m~~~~~ 807 (953)
|+.++....+++-++.|..+.+--..-. ..+.+++.. .|.+.+...++...
T Consensus 757 dvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~eeq~~ 810 (1088)
T KOG4318|consen 757 DVPEIQAETEKASELRTLFPTTTCYYEGYAFFATQTEQKKAAKKCFERLEEQLT 810 (1088)
T ss_pred cchhHHHHHHHHHhcccccccchHhhhhhHHHHhhHHHHHHHHHHHHHHHHccC
Confidence 6777778888888877665443222222 444455555 56668887777643
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=2.9e-13 Score=136.96 Aligned_cols=364 Identities=13% Similarity=0.116 Sum_probs=222.2
Q ss_pred chhhHHHhhccccc---ccccccCCCCC-cccHHHHHHHHHhcCCCHHHHHHHHHHhhc--CCCChhHHHHHHHH--hcc
Q 037236 3 HSLRSIFKAKSSLS---LSAKTNNASTE-GLHFLQEITTLCEESKSLNKALSLLQENLH--NADLKEATGVLLQA--CGH 74 (953)
Q Consensus 3 ~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~ll~~--~~~ 74 (953)
+-|++.|-+..++- .+.-.+...|+ +.+=|.++. ...+| ..+++.-+|+.|.. ++.++..-..|++. |-+
T Consensus 87 ~E~~~LF~~~~~QP~l~~F~P~~l~~~~~V~~E~nL~k-mIS~~-EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~N 164 (625)
T KOG4422|consen 87 TEWPTLFAFDRDQPQLPVFRPRHLADPLQVETENNLLK-MISSR-EVKDSCILYERMRSENVDVSEKVQLELFRLVTYYN 164 (625)
T ss_pred HhchHhhhccccCccccccCchhcCCchhhcchhHHHH-HHhhc-ccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhc
Confidence 45677765544332 33334444443 445555554 44566 79999999999988 55566666666554 333
Q ss_pred CCChhHHH-HHHHHHhhhcCCCCCchhhhHHHHHHHhcCChhhHHHHhhcCCCCCchhHHHHHHHHhcCCChhhHHHHHH
Q 037236 75 EKDIEIGK-RVHELISASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYPDVLSIFV 153 (953)
Q Consensus 75 ~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 153 (953)
..+..-+. +.|-.+. ..| +.+..+| +.|.+.+ -+|+..| +...+|.+||+|+++-...+.|.++|+
T Consensus 165 s~~~~~~E~~~Fv~~~-~~~-E~S~~sW--------K~G~vAd--L~~E~~P-KT~et~s~mI~Gl~K~~~~ERA~~L~k 231 (625)
T KOG4422|consen 165 SSNVPFAEWEEFVGMR-NFG-EDSTSSW--------KSGAVAD--LLFETLP-KTDETVSIMIAGLCKFSSLERARELYK 231 (625)
T ss_pred CCCCcchhHHHHhhcc-ccc-ccccccc--------ccccHHH--HHHhhcC-CCchhHHHHHHHHHHHHhHHHHHHHHH
Confidence 34433222 2333444 333 2333344 3455544 4455444 455789999999999999999999999
Q ss_pred HhHhcCCCCCCcccHHHHHHHhhcCCChhhHhHHHHHHHHhCCCCChhHHHHHHHHhhccCChHHHHHHh----ccCC--
Q 037236 154 ELLSDTELKPDNFTFPCVIKACGGIADVSFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLF----EVMP-- 227 (953)
Q Consensus 154 ~m~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f----~~m~-- 227 (953)
+... ...+.+..+||.+|.+-. +..++.+..+|+...+.||.+++|++++..++.|+++.|++.+ .+|+
T Consensus 232 E~~~-~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKei 306 (625)
T KOG4422|consen 232 EHRA-AKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEI 306 (625)
T ss_pred HHHH-hhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Confidence 9998 788999999999998764 3445889999999999999999999999999999998877654 3343
Q ss_pred --CCCeecHHHHHHHHHcCCCchH-HHHHHHHhhh--ccCCCCC----ChhhHHHHHHhhhcCCCchHHHHHHHHHHHhC
Q 037236 228 --ERNLVSWNSIICGSSENGFSCE-SFDLLIKMMG--CEEGFIP----DVATVVTVLPVCAGEGNVDLGILVHGLAVKLG 298 (953)
Q Consensus 228 --~~~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~--~~~g~~p----~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 298 (953)
+|...+|.-+|.-+.+.++..+ |..++..+.- .....+| |..-|...+..|.+..+.+.|.++++......
T Consensus 307 GVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~ 386 (625)
T KOG4422|consen 307 GVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGD 386 (625)
T ss_pred CCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC
Confidence 3666677777777777666543 3333333310 1112222 44456666777777777777777766554321
Q ss_pred ----CCCCchHHHHHHHhhHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHhccCCCCCchhhH
Q 037236 299 ----LTRELMVNNALVDMYAKCGFLSEAQILFDKNNNKNVVSWNTIIGAFSMAGDVCGTFDLLRKMQMKEEEMKPNEVTV 374 (953)
Q Consensus 299 ----~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~p~~~t~ 374 (953)
+.|+. ....-|..+....++....+.-+..|+.|.-.- .-|+..+.
T Consensus 387 N~~~ig~~~----------------------------~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~--y~p~~~~m 436 (625)
T KOG4422|consen 387 NWKFIGPDQ----------------------------HRNFYYRKFFDLICQMESIDVTLKWYEDLVPSA--YFPHSQTM 436 (625)
T ss_pred chhhcChHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccce--ecCCchhH
Confidence 11110 001113334444455555555555555555444 55666666
Q ss_pred HHHHHHhccccchHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 037236 375 LNVLTSCSEKSELLSLKELHGYSLRHGFDNDELVANAFVVAY 416 (953)
Q Consensus 375 ~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y 416 (953)
..++++....+.++...+++..++..|...+.....-++...
T Consensus 437 ~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L 478 (625)
T KOG4422|consen 437 IHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLL 478 (625)
T ss_pred HHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 666666666666666666666665555444433333333333
No 30
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=1.9e-13 Score=138.32 Aligned_cols=332 Identities=15% Similarity=0.087 Sum_probs=221.9
Q ss_pred chhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcccHHHHHHHh--hcCCChhhH-hHHHHHHHHhCCCCChhHHHH
Q 037236 129 LFQWNALVSGFTKNELYPDVLSIFVELLSDTELKPDNFTFPCVIKAC--GGIADVSFG-SGVHGMAAKMGLIGDVFVSNA 205 (953)
Q Consensus 129 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~ll~~~--~~~~~~~~a-~~~~~~~~~~g~~~~~~~~~~ 205 (953)
+++-|.|+... .+|...++.-+|+.|.. .|++.+...-..+++.. -...++..+ .+.|-.|.+.|-.. ..+|
T Consensus 116 V~~E~nL~kmI-S~~EvKDs~ilY~~m~~-e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S-~~sW-- 190 (625)
T KOG4422|consen 116 VETENNLLKMI-SSREVKDSCILYERMRS-ENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDS-TSSW-- 190 (625)
T ss_pred hcchhHHHHHH-hhcccchhHHHHHHHHh-cCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccc-cccc--
Confidence 34666666543 46888899999999999 89888877766665543 233333322 33444454444322 2222
Q ss_pred HHHHhhccCChHHHHHHhccCCCCCeecHHHHHHHHHcCCCchHHHHHHHHhhhccCCCCCChhhHHHHHHhhhcCCCch
Q 037236 206 LIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGSSENGFSCESFDLLIKMMGCEEGFIPDVATVVTVLPVCAGEGNVD 285 (953)
Q Consensus 206 li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~ 285 (953)
+.|++.+ -+|+..| +...++..||.|+++-...+.|.+++++. .....+.+..+||.+|.+.+- .
T Consensus 191 ------K~G~vAd--L~~E~~P-KT~et~s~mI~Gl~K~~~~ERA~~L~kE~--~~~k~kv~~~aFN~lI~~~S~----~ 255 (625)
T KOG4422|consen 191 ------KSGAVAD--LLFETLP-KTDETVSIMIAGLCKFSSLERARELYKEH--RAAKGKVYREAFNGLIGASSY----S 255 (625)
T ss_pred ------ccccHHH--HHHhhcC-CCchhHHHHHHHHHHHHhHHHHHHHHHHH--HHhhheeeHHhhhhhhhHHHh----h
Confidence 3465554 4555555 46678999999999999999999999999 788899999999999987653 3
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHhhHhcCChhHHHHHHhc----C----CCCCcccHHHHHHHHHcCCChhH-HHHH
Q 037236 286 LGILVHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFDK----N----NNKNVVSWNTIIGAFSMAGDVCG-TFDL 356 (953)
Q Consensus 286 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~----~----~~~d~~~~~~li~~~~~~g~~~~-A~~l 356 (953)
.++.+..+|+...+.||..++|+++.+..+.|+++.|++.+-+ | .+|...+|..+|..+.+.+++.+ |...
T Consensus 256 ~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~ 335 (625)
T KOG4422|consen 256 VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSW 335 (625)
T ss_pred ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHH
Confidence 4489999999999999999999999999999999988776532 2 24666677777777776666543 3333
Q ss_pred HHHHHhc--cCCCCC----chhhHHHHHHHhccccchHHHHHHHHHHHHcC----CCCchhHHHHHHHHHHhcCCcccHH
Q 037236 357 LRKMQMK--EEEMKP----NEVTVLNVLTSCSEKSELLSLKELHGYSLRHG----FDNDELVANAFVVAYAKCGSEISAE 426 (953)
Q Consensus 357 ~~~m~~~--g~~~~p----~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g----~~~~~~~~~~li~~y~~~g~~~~A~ 426 (953)
..+++.. |..++| |..-|...+..|.+..+.+.|.++++...... +.|+.
T Consensus 336 i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~-------------------- 395 (625)
T KOG4422|consen 336 INDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQ-------------------- 395 (625)
T ss_pred HHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHH--------------------
Confidence 3333321 222333 23345566666666667776766666543211 11110
Q ss_pred HHhccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccchhhHHHHHHHHhCCCCc
Q 037236 427 NVFHGMDSRTVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGD 506 (953)
Q Consensus 427 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~ 506 (953)
....-|..+....++....+.-+..|+.|+-.-+-|+..+...++++....+.++...+++..++..|...+
T Consensus 396 --------~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r 467 (625)
T KOG4422|consen 396 --------HRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFR 467 (625)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhh
Confidence 011234455566666677777777777777776777777777777777777777777777777776664443
Q ss_pred hh
Q 037236 507 SF 508 (953)
Q Consensus 507 ~~ 508 (953)
..
T Consensus 468 ~~ 469 (625)
T KOG4422|consen 468 SD 469 (625)
T ss_pred HH
Confidence 33
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.66 E-value=1e-11 Score=138.08 Aligned_cols=654 Identities=13% Similarity=0.094 Sum_probs=340.3
Q ss_pred cCCCHHHHHHHHHHhhc-CCCChhHHHHHHHHhccCCChhHHHHHHHHHhhhcCCCCCchhhhHHHHHHHhcCChhhHHH
Q 037236 41 ESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELISASTQFSNDFIINTRLITMYSLCGFPLDSRR 119 (953)
Q Consensus 41 ~~~~~~~a~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~ 119 (953)
.| ++++|.+++..+++ .|-+...|..|...+-..|+.+.+.+..-..- .-.+.|...|-.+.....+.|++..|+-
T Consensus 152 rg-~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAA--HL~p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 152 RG-DLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAA--HLNPKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred hC-CHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHH--hcCCCChHHHHHHHHHHHhcccHHHHHH
Confidence 37 78888888887777 66677778888888877787777665432222 2225556677777777777788888888
Q ss_pred HhhcCCCCCchhHH---HHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcc-----cHHHHHHHhhcCCChhhHhHHHHHH
Q 037236 120 VFDSLKTRNLFQWN---ALVSGFTKNELYPDVLSIFVELLSDTELKPDNF-----TFPCVIKACGGIADVSFGSGVHGMA 191 (953)
Q Consensus 120 ~f~~~~~~~~~~~~---~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~-----~~~~ll~~~~~~~~~~~a~~~~~~~ 191 (953)
.|.+..+.++.-|- --...|-+.|+...|.+-|.++.+ .. +|... +--.+++.+...++.+.|.+.++..
T Consensus 229 cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~-~~-p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 229 CYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQ-LD-PPVDIERIEDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHh-hC-CchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 88776544333232 223466677777778777777776 21 12111 1122233344444445555544444
Q ss_pred HHhC-CCCChhHHHHHHHHhhccCChHHHHHHhccCCC----CCeecHHHHHHHHHcCCCchHHHHHHHHhhhccCCCCC
Q 037236 192 AKMG-LIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE----RNLVSWNSIICGSSENGFSCESFDLLIKMMGCEEGFIP 266 (953)
Q Consensus 192 ~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p 266 (953)
...+ -..+...++.+..+|.+...++.|......+.. +|..-|.+= ..++.+ ...+.. ...++.+
T Consensus 307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~-----~~~~~~--~~~~~~---~~~~~s~ 376 (895)
T KOG2076|consen 307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD-----ERRREE--PNALCE---VGKELSY 376 (895)
T ss_pred HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh-----hhcccc--cccccc---CCCCCCc
Confidence 4321 122233444455555554444444443333321 222212100 000000 000000 0112222
Q ss_pred ChhhHHHHHHhhhcCCCchHHHHHHHHHHHhC--CCCCchHHHHHHHhhHhcCChhHHHHHHhcCCC----CCcccHHHH
Q 037236 267 DVATVVTVLPVCAGEGNVDLGILVHGLAVKLG--LTRELMVNNALVDMYAKCGFLSEAQILFDKNNN----KNVVSWNTI 340 (953)
Q Consensus 267 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~----~d~~~~~~l 340 (953)
+... .-+.-++.+....+....+.....+.. +..++..+.-+.++|...|++.+|.++|..+.. .+...|--+
T Consensus 377 ~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~ 455 (895)
T KOG2076|consen 377 DLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKL 455 (895)
T ss_pred cchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHH
Confidence 2222 122233445556666666666666665 344566777788888888888888888876654 355678888
Q ss_pred HHHHHcCCChhHHHHHHHHHHhccCCCCCchhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 037236 341 IGAFSMAGDVCGTFDLLRKMQMKEEEMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLRHGFDNDELVANAFVVAYAKCG 420 (953)
Q Consensus 341 i~~~~~~g~~~~A~~l~~~m~~~g~~~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g 420 (953)
..+|...|.+++|++.|+..+.. .|+ +..+--+|-..|-+.|
T Consensus 456 a~c~~~l~e~e~A~e~y~kvl~~----~p~----------------------------------~~D~Ri~Lasl~~~~g 497 (895)
T KOG2076|consen 456 ARCYMELGEYEEAIEFYEKVLIL----APD----------------------------------NLDARITLASLYQQLG 497 (895)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhc----CCC----------------------------------chhhhhhHHHHHHhcC
Confidence 88888888888888888877653 343 4445556667778888
Q ss_pred CcccHHHHhccCCCCChh------------hHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhcccccc
Q 037236 421 SEISAENVFHGMDSRTVS------------SWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSL 488 (953)
Q Consensus 421 ~~~~A~~~f~~~~~~~~~------------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 488 (953)
+.++|.+.+..+..+|.. .--.....+.+.|+.++=+.+-..|+.... ....+ +- +.
T Consensus 498 ~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~------~~~~~--f~---~~ 566 (895)
T KOG2076|consen 498 NHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFL------KKRYI--FP---RN 566 (895)
T ss_pred CHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH------HHHHh--cc---hH
Confidence 888888888887655421 112233455566666665555555543210 00000 00 00
Q ss_pred chhhHHHHHHHHhCCCCchhhHhhHHHHHHhcCChhHHHHHHHhc--------ccCCcccH----HHHHHHHHhcCChhH
Q 037236 489 HRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEM--------EDKSLVSW----NTMIAGYSQNKLPVE 556 (953)
Q Consensus 489 ~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~--------~~~~~~~~----~~li~~~~~~g~~~~ 556 (953)
.+.+.. .....+..........++.+-.+.++.....+-...- ..-...-| .-++..+++.+++++
T Consensus 567 ~k~r~~--~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qe 644 (895)
T KOG2076|consen 567 KKKRRR--AIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQE 644 (895)
T ss_pred HHHHHH--hhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHH
Confidence 000000 0000001111222223333333333322221111100 00011112 223444555555555
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCc----cHHHHHHHHHHhcCCHHHHHHHhh
Q 037236 557 AIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDA----FVACSIIDMYAKCGCLEQSRRVFD 632 (953)
Q Consensus 557 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~y~~~g~~~~A~~~~~ 632 (953)
|+.+...+...... ..+. ..-...+......+++..|...+.
T Consensus 645 Al~vv~~a~~~~~f----------------------------------~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR 690 (895)
T KOG2076|consen 645 ALSVVFTALEAYIF----------------------------------FQDSEIRKELQFLGLKASLYARDPGDAFSYLR 690 (895)
T ss_pred HHHHHHHHHhhhhh----------------------------------hccHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 55555555442211 1111 112233344445667777776666
Q ss_pred hcCCC-----C---HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037236 633 RLKDK-----D---VTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDT--FTFVGILMACNHAGLVENGLKYFSQMQK 702 (953)
Q Consensus 633 ~~~~~-----~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 702 (953)
.|... + ...||...+.+.++|+-.--.+++..... ..|+. ........-....+.+..|+.++-+...
T Consensus 691 ~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~--~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~ 768 (895)
T KOG2076|consen 691 SVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLV--KNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR 768 (895)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCccCCcceeeeechhHhhccchHHHHHHHHHHHH
Confidence 66532 2 34677666666666654444444444333 23322 2222223334456777778777665544
Q ss_pred hcCCCCChhHH-HHHHHHHhh--cC--------CHHHHHHHHHhCCC--CC--ChhHHHHHHHHHHhcCChhHHHHHHHH
Q 037236 703 LHAVKPKLEHY-ACVVDMLGR--AG--------KLDDAFKLIIEMPE--EA--DAGIWSSLLRSCRTYGALKMGEKVAKT 767 (953)
Q Consensus 703 ~~~~~p~~~~~-~~lv~~l~~--~g--------~~~eA~~~~~~~~~--~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~ 767 (953)
..|+...+ -||.-++.. .+ ..-.+..++++... .+ -..+..+++.+|..-|=+..|...+++
T Consensus 769 ---~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYek 845 (895)
T KOG2076|consen 769 ---QNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEK 845 (895)
T ss_pred ---hCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 45662222 233322221 11 23345555544322 22 456788899999999999999999999
Q ss_pred HhccCCCCc------------chHHHHHHHHHhcCCchHHHHHHH
Q 037236 768 LLELEPDKA------------ENYVLVSNIYAGSEKWDDVRMMRQ 800 (953)
Q Consensus 768 ~~~l~p~~~------------~~~~~l~~~y~~~g~~~~a~~~~~ 800 (953)
++++.|.+. .+-..|.-+|..+|+..-|.++..
T Consensus 846 vL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~ 890 (895)
T KOG2076|consen 846 VLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILE 890 (895)
T ss_pred HhCCCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHH
Confidence 999975432 234567889999999999988764
No 32
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.64 E-value=3.2e-12 Score=150.21 Aligned_cols=438 Identities=8% Similarity=-0.031 Sum_probs=241.5
Q ss_pred hhccCChHHHHHHhccCCCCCee---cHHHHHHHHHcCCCchHHHHHHHHhhhccCCCCCChhhHH---HHHHhhhcCCC
Q 037236 210 YGKCAFVEEMVKLFEVMPERNLV---SWNSIICGSSENGFSCESFDLLIKMMGCEEGFIPDVATVV---TVLPVCAGEGN 283 (953)
Q Consensus 210 ~~~~g~~~~A~~~f~~m~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~---~ll~~~~~~~~ 283 (953)
..+.|+++.|+..|++..+.+.. ....++..+...|+.++|+..+++. . .|+...+. .+...+...|+
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka--~----~p~n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERY--Q----SSMNISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHh--c----cCCCCCHHHHHHHHHHHHHcCC
Confidence 44667777777777766642222 1236666666777777777777777 2 33222222 22345556677
Q ss_pred chHHHHHHHHHHHhCCCCCchHHHHHHHhhHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHc--CCChhHHHHHHHHHH
Q 037236 284 VDLGILVHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFDKNNNKNVVSWNTIIGAFSM--AGDVCGTFDLLRKMQ 361 (953)
Q Consensus 284 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~--~g~~~~A~~l~~~m~ 361 (953)
++.|.++++.+++.. +.++.++..++..|...++.++|++.++++...+......+..+|.. .++..+|++.++++.
T Consensus 118 yd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 118 WDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 777777777777765 33456666778888888999999998888776544433334444444 555556888998888
Q ss_pred hccCCCCCc-hhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCcccHHHHhccCCCCChhhH
Q 037236 362 MKEEEMKPN-EVTVLNVLTSCSEKSELLSLKELHGYSLRHGFDNDELVANAFVVAYAKCGSEISAENVFHGMDSRTVSSW 440 (953)
Q Consensus 362 ~~g~~~~p~-~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~ 440 (953)
+. .|+ ...+.....++.+.|-...|.++... .|+.++-...... +.+.|.+..+....+
T Consensus 197 ~~----~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~------~p~~f~~~~~~~l-----~~~~~a~~vr~a~~~----- 256 (822)
T PRK14574 197 RL----APTSEEVLKNHLEILQRNRIVEPALRLAKE------NPNLVSAEHYRQL-----ERDAAAEQVRMAVLP----- 256 (822)
T ss_pred Hh----CCCCHHHHHHHHHHHHHcCCcHHHHHHHHh------CccccCHHHHHHH-----HHHHHHHHHhhcccc-----
Confidence 74 344 33344445555555555444443332 1111111110000 000000000000000
Q ss_pred HHHHHHHHhcCC---hHHHHHHHHHhhhC-CCCCCc-chH----HHHHHhhccccccchhhHHHHHHHHhCCCCchhhHh
Q 037236 441 NALICGYAQNGD---HLKALDYFLQMTHS-DLEPDL-FSI----GSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGI 511 (953)
Q Consensus 441 ~~li~~~~~~g~---~~~A~~~~~~m~~~-g~~p~~-~t~----~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~ 511 (953)
.-...++ .+.|+.-++.+... +-.|.. .-| .-.+-++...++...+...++.+...+.+....+.-
T Consensus 257 -----~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~ 331 (822)
T PRK14574 257 -----TRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARR 331 (822)
T ss_pred -----cccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHH
Confidence 0000111 24455555555442 111322 111 123345566667777777777777666655556777
Q ss_pred hHHHHHHhcCChhHHHHHHHhcccCC---------cccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhh-HHHHHH
Q 037236 512 SLLSLYMHCEKSSSARVLFDEMEDKS---------LVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEIS-IVSILS 581 (953)
Q Consensus 512 ~li~~y~~~g~~~~A~~~f~~~~~~~---------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~ 581 (953)
++.++|...+++++|..+|.++...+ ......|.-+|...+++++|..+++++.+. .|..+. |
T Consensus 332 a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~--~p~~~~~~----- 404 (822)
T PRK14574 332 WAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ--TPYQVGVY----- 404 (822)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCcEEecc-----
Confidence 77777777777777777777764321 122355677777778888888887777763 231000 0
Q ss_pred HhccccchHHHHHHHHHHHHcCCCCCc-cHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHH
Q 037236 582 ACSQLSALRLGKETHCYALKAILTNDA-FVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKE 657 (953)
Q Consensus 582 a~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~ 657 (953)
.... ....||- .....++..+...|++.+|++.++++. +-|...+..+...+...|.+.+
T Consensus 405 --~~~~--------------~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~ 468 (822)
T PRK14574 405 --GLPG--------------KEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRK 468 (822)
T ss_pred --CCCC--------------CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHH
Confidence 0000 0001111 122334555666777777777777665 3466677777777777777777
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 037236 658 AIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLH 704 (953)
Q Consensus 658 A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 704 (953)
|++.++.... ..| +..+....+.+....|++++|..+.+...+.+
T Consensus 469 A~~~~k~a~~--l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 469 AEQELKAVES--LAPRSLILERAQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HHHHHHHHhh--hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 7777755555 456 44556666666677777777777776665533
No 33
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.61 E-value=4e-10 Score=120.52 Aligned_cols=495 Identities=11% Similarity=0.072 Sum_probs=319.8
Q ss_pred HhhhcCCCchHHHHHHHHHHHhCCCCCchHHHHHHHhhHhcCChhHHHHHHhcCC---CCCcccHHHHHHHHHcCCChhH
Q 037236 276 PVCAGEGNVDLGILVHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFDKNN---NKNVVSWNTIIGAFSMAGDVCG 352 (953)
Q Consensus 276 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~ 352 (953)
++.....+.+.|.-++...++.- +.+. -|.-+|++..-++.|.+++.+.. ..+...|.+-..-=-.+|+.+.
T Consensus 384 KaAVelE~~~darilL~rAvecc-p~s~----dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~m 458 (913)
T KOG0495|consen 384 KAAVELEEPEDARILLERAVECC-PQSM----DLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDM 458 (913)
T ss_pred HHHHhccChHHHHHHHHHHHHhc-cchH----HHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHH
Confidence 33344445555555555555432 2222 23334455555666666665433 2355556555444455666665
Q ss_pred HHHHHHH----HHhccCCCCCchhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCcccHHHH
Q 037236 353 TFDLLRK----MQMKEEEMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLRHGFDNDELVANAFVVAYAKCGSEISAENV 428 (953)
Q Consensus 353 A~~l~~~----m~~~g~~~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 428 (953)
...+..+ +...| +..+...|..=..+|...|..-....|...++..|++...
T Consensus 459 v~kii~rgl~~L~~ng--v~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed---------------------- 514 (913)
T KOG0495|consen 459 VEKIIDRGLSELQANG--VEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEED---------------------- 514 (913)
T ss_pred HHHHHHHHHHHHhhcc--eeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccch----------------------
Confidence 5555443 23344 5555555555555555555555555555555555543321
Q ss_pred hccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccchhhHHHHHHHHhCCCCchh
Q 037236 429 FHGMDSRTVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSF 508 (953)
Q Consensus 429 f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~ 508 (953)
--.+|+.-...|.+.+.++-|..+|...++- ++-+...|......=-..|..+....++..++..-.+ ...
T Consensus 515 -------~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pk-ae~ 585 (913)
T KOG0495|consen 515 -------RKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPK-AEI 585 (913)
T ss_pred -------hHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCc-chh
Confidence 1123444444444444444444444444432 1222233333333333334444444444444443322 223
Q ss_pred hHhhHHHHHHhcCChhHHHHHHHhcccC---CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhcc
Q 037236 509 TGISLLSLYMHCEKSSSARVLFDEMEDK---SLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQ 585 (953)
Q Consensus 509 ~~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 585 (953)
.+-....-+-..|++..|+.++.+.-+. +...|-+-+.....+.+++.|..+|.+.... .|+...|.--...---
T Consensus 586 lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ 663 (913)
T KOG0495|consen 586 LWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERY 663 (913)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHH
Confidence 3333444455567777777777665532 3346767777777777777787777776653 4566665555555555
Q ss_pred ccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHH
Q 037236 586 LSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELF 662 (953)
Q Consensus 586 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~ 662 (953)
++..++|+++++..++.- +.-...|-.+...|...++++.|...|..-. +..+..|-.+...--+.|+.-+|..+|
T Consensus 664 ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~il 742 (913)
T KOG0495|consen 664 LDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSIL 742 (913)
T ss_pred hhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHH
Confidence 677777777777666642 2245677888899999999999999988765 335668988888888889999999999
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC
Q 037236 663 EKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPEEAD 741 (953)
Q Consensus 663 ~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~ 741 (953)
++.+-. .| |...|...+..-.+.|..+.|..+..++.+. ...+...|.--|.+..+.++-..+.+.+++. +.|
T Consensus 743 drarlk--NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkc--e~d 816 (913)
T KOG0495|consen 743 DRARLK--NPKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC--EHD 816 (913)
T ss_pred HHHHhc--CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhc--cCC
Confidence 998885 56 7788999999999999999999999888774 3334677888888888888877777777765 467
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCccCCceeEEEeC
Q 037236 742 AGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKERGLQKEAGCSWIELG 819 (953)
Q Consensus 742 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~ 819 (953)
+.+.-+....+.....++.|..-+++++..+|++..++..+-..+...|.-++-..++++.... .+.-|..|+.+.
T Consensus 817 phVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~avS 892 (913)
T KOG0495|consen 817 PHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAVS 892 (913)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHh
Confidence 7777778888888899999999999999999999999999999999999999998998877653 344566776554
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.61 E-value=5.2e-11 Score=132.56 Aligned_cols=343 Identities=15% Similarity=0.139 Sum_probs=205.3
Q ss_pred CCchHHHHHHHHHHHhCCCCCchHHHHHHHhhHhcCChhHHHHHHh---cCCCCCcccHHHHHHHHHcCCChhHHHHHHH
Q 037236 282 GNVDLGILVHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFD---KNNNKNVVSWNTIIGAFSMAGDVCGTFDLLR 358 (953)
Q Consensus 282 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~---~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~ 358 (953)
|++++|..++.++++.. +.....|..|...|-..|+++++...+- .+...|..-|-.+..-..+.|+++.|.-.|.
T Consensus 153 g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 56666666666665554 3344455556666666666666555442 2333444556555555566666666666666
Q ss_pred HHHhccCCCCCchhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCchhHHHH----HHHHHHhcCCcccHHHHhccCCC
Q 037236 359 KMQMKEEEMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLRHGFDNDELVANA----FVVAYAKCGSEISAENVFHGMDS 434 (953)
Q Consensus 359 ~m~~~g~~~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~----li~~y~~~g~~~~A~~~f~~~~~ 434 (953)
+..... +++...+.--...|.+.|+...|..-+..+.....+.|..-.-. .+..|...++-+.|.+.++....
T Consensus 232 rAI~~~---p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 232 RAIQAN---PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHhcC---CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 655532 23333333344445555666666555555555433223222222 23445555555666666655433
Q ss_pred --C---ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcc----------------------hH----HHHHHhhc
Q 037236 435 --R---TVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLF----------------------SI----GSLILACT 483 (953)
Q Consensus 435 --~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----------------------t~----~~ll~~~~ 483 (953)
. +...+|.++..|.+...++.|......+.....++|.. .| ..+.-++.
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~ 388 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLV 388 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhh
Confidence 1 34567777788888888888887777776622222211 11 12233445
Q ss_pred cccccchhhHHHHHHHHhC--CCCchhhHhhHHHHHHhcCChhHHHHHHHhccc----CCcccHHHHHHHHHhcCChhHH
Q 037236 484 HLKSLHRGKEIHGFVIRNG--LEGDSFTGISLLSLYMHCEKSSSARVLFDEMED----KSLVSWNTMIAGYSQNKLPVEA 557 (953)
Q Consensus 484 ~~~~~~~a~~i~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A 557 (953)
+....+....+...+.+.. +..+...+.-+.++|...|++.+|.++|..+.. .+...|-.+..+|...|.+++|
T Consensus 389 ~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred cccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence 5666666666777777766 444567778888888888999999998888874 3566888888888888889999
Q ss_pred HHHHHHHHHcCCCCChhhH-HHHHHHhccccchHHHHHHHHHHH--------HcCCCCCccHHHHHHHHHHhcCCHHHHH
Q 037236 558 IVLFRRMFSIGVQPCEISI-VSILSACSQLSALRLGKETHCYAL--------KAILTNDAFVACSIIDMYAKCGCLEQSR 628 (953)
Q Consensus 558 ~~~~~~m~~~g~~p~~~t~-~~ll~a~~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~y~~~g~~~~A~ 628 (953)
++.|...+.. .|+..-. .++-..+.++|+.++|.+++..+. ..+..|+..+.....++|...|+.++=.
T Consensus 469 ~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi 546 (895)
T KOG2076|consen 469 IEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFI 546 (895)
T ss_pred HHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHH
Confidence 9888888765 5554322 233334566777887777777643 2334555666666677777777777643
Q ss_pred HH
Q 037236 629 RV 630 (953)
Q Consensus 629 ~~ 630 (953)
.+
T Consensus 547 ~t 548 (895)
T KOG2076|consen 547 NT 548 (895)
T ss_pred HH
Confidence 33
No 35
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.54 E-value=7.9e-09 Score=110.83 Aligned_cols=457 Identities=14% Similarity=0.085 Sum_probs=246.2
Q ss_pred HhhccCChHHHHHHhccCCC---CCeecHHHHHHHHHcCCCchHHHHHHHHhhh--ccCCCCCChhhHHHHHHhhhcCCC
Q 037236 209 MYGKCAFVEEMVKLFEVMPE---RNLVSWNSIICGSSENGFSCESFDLLIKMMG--CEEGFIPDVATVVTVLPVCAGEGN 283 (953)
Q Consensus 209 ~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~--~~~g~~p~~~t~~~ll~~~~~~~~ 283 (953)
+|++...++.|.++++...+ .+...|-+-...=-.+|+.+....++.+-.. ...|+..+...|-.=...|-..|.
T Consensus 415 AlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ags 494 (913)
T KOG0495|consen 415 ALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGS 494 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCC
Confidence 33444445555555544432 2333444333333345554444444433110 334555555555555555555555
Q ss_pred chHHHHHHHHHHHhCCCCC--chHHHHHHHhhHhcCChhHHHHHHhcCCC---CCcccHHHHHHHHHcCCChhHHHHHHH
Q 037236 284 VDLGILVHGLAVKLGLTRE--LMVNNALVDMYAKCGFLSEAQILFDKNNN---KNVVSWNTIIGAFSMAGDVCGTFDLLR 358 (953)
Q Consensus 284 ~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~ 358 (953)
.-.+..+...++.-|++.. ..+++.-...+.+.+.++-|+.+|..... .+...|......=-..|
T Consensus 495 v~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hg---------- 564 (913)
T KOG0495|consen 495 VITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHG---------- 564 (913)
T ss_pred hhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcC----------
Confidence 5555555555554443221 23444444444455555555444443221 23333433333333334
Q ss_pred HHHhccCCCCCchhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCcccHHHHhccCCC---C
Q 037236 359 KMQMKEEEMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLRHGFDNDELVANAFVVAYAKCGSEISAENVFHGMDS---R 435 (953)
Q Consensus 359 ~m~~~g~~~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~ 435 (953)
..+....++..++..- +.....+-....-+...|++..|+.++...-+ .
T Consensus 565 ---------------------------t~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn 616 (913)
T KOG0495|consen 565 ---------------------------TRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN 616 (913)
T ss_pred ---------------------------cHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC
Confidence 4444444444443321 11222333333444444555555554443321 1
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccchhhHHHHHHHHhCCCCchhhHhhHHH
Q 037236 436 TVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLS 515 (953)
Q Consensus 436 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 515 (953)
+...|-+-+..-..+.++++|..+|.+.... .| +..+|..-+.
T Consensus 617 seeiwlaavKle~en~e~eraR~llakar~~--sg-----------------------------------TeRv~mKs~~ 659 (913)
T KOG0495|consen 617 SEEIWLAAVKLEFENDELERARDLLAKARSI--SG-----------------------------------TERVWMKSAN 659 (913)
T ss_pred cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CC-----------------------------------cchhhHHHhH
Confidence 3445555555556666666666666555442 12 2222222222
Q ss_pred HHHhcCChhHHHHHHHhcccC--Cc-ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHH
Q 037236 516 LYMHCEKSSSARVLFDEMEDK--SL-VSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLG 592 (953)
Q Consensus 516 ~y~~~g~~~~A~~~f~~~~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 592 (953)
.---.+..++|.+++++..+. +. ..|-.+...+-+.++.+.|.+.|..-.+. -|
T Consensus 660 ~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~--cP--------------------- 716 (913)
T KOG0495|consen 660 LERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK--CP--------------------- 716 (913)
T ss_pred HHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc--CC---------------------
Confidence 222334555555555444331 11 23444444444445555554444332221 22
Q ss_pred HHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 037236 593 KETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALG 669 (953)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 669 (953)
..+-.|-.|...-.+.|.+-.|..+|++.. ++|...|-..|..-.+.|..+.|..+..+.++.
T Consensus 717 -------------~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe- 782 (913)
T KOG0495|consen 717 -------------NSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE- 782 (913)
T ss_pred -------------CCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 245566777777778888888888888766 457778888888888888888888888888775
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CC-ChhHHHH
Q 037236 670 HKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPE-EA-DAGIWSS 747 (953)
Q Consensus 670 ~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~-~~~~~~~ 747 (953)
+.-+...|.--|...-+.++-......++. ..-|+...-.+..++-...+++.|.+.|.+... .| +.-+|--
T Consensus 783 cp~sg~LWaEaI~le~~~~rkTks~DALkk------ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~ 856 (913)
T KOG0495|consen 783 CPSSGLLWAEAIWLEPRPQRKTKSIDALKK------CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAW 856 (913)
T ss_pred CCccchhHHHHHHhccCcccchHHHHHHHh------ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHH
Confidence 333556666666666666654444333322 234445566677777788888899988887754 33 4568888
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHH
Q 037236 748 LLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVS 783 (953)
Q Consensus 748 ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~ 783 (953)
+...+..||.-+.-..++.+...-+|.....+...+
T Consensus 857 fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avS 892 (913)
T KOG0495|consen 857 FYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVS 892 (913)
T ss_pred HHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHh
Confidence 888889999888889999999889998776655443
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.53 E-value=2.8e-14 Score=150.87 Aligned_cols=212 Identities=15% Similarity=0.158 Sum_probs=115.8
Q ss_pred cchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC--CCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 037236 587 SALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK--DKDVTSWNAIIGGHGIHGYGKEAIELFEK 664 (953)
Q Consensus 587 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 664 (953)
++.+.+.+.++.+...+.. ++..+..++.. ...+++++|..++...- .++...|..++..+...|+++++.+++++
T Consensus 58 ~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~ 135 (280)
T PF13429_consen 58 GDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEK 135 (280)
T ss_dssp --------------------------------------------------------------H-HHHTT-HHHHHHHHHH
T ss_pred ccccccccccccccccccc-ccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHH
Confidence 3333444443333333222 44455566666 67889999998887764 45677788888999999999999999999
Q ss_pred HHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CC
Q 037236 665 MLALG-HKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EA 740 (953)
Q Consensus 665 m~~~g-~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~ 740 (953)
+.... ..++...|..+...+.+.|+.++|.+.+++.++ ..|+ ......++.++...|+.+++.++++.... ++
T Consensus 136 ~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~ 212 (280)
T PF13429_consen 136 LEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALE---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPD 212 (280)
T ss_dssp HHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HT
T ss_pred HHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcC
Confidence 87643 234677788888999999999999999999987 5676 77788899999999999998888766543 46
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 037236 741 DAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMK 803 (953)
Q Consensus 741 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 803 (953)
|+..|..+..++...|+.+.|...++++++.+|+|+.....++.++...|+.++|.++++..-
T Consensus 213 ~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 213 DPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp SCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------------
T ss_pred HHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 778999999999999999999999999999999999999999999999999999999887653
No 37
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.53 E-value=7.8e-12 Score=127.25 Aligned_cols=271 Identities=13% Similarity=0.073 Sum_probs=190.8
Q ss_pred HHHhcCChhHHHHHHHhcccCCcccHH----HH-HHHHHhcC-ChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccch
Q 037236 516 LYMHCEKSSSARVLFDEMEDKSLVSWN----TM-IAGYSQNK-LPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSAL 589 (953)
Q Consensus 516 ~y~~~g~~~~A~~~f~~~~~~~~~~~~----~l-i~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 589 (953)
-|.+.|+++.|.+++.-..++|..+-. .| .--|.+-| ++..|.+.-+...... +-|....+.--+..-..|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 356677777777776666555443221 11 11233322 3445555444443221 11111111111122235677
Q ss_pred HHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 037236 590 RLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKML 666 (953)
Q Consensus 590 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 666 (953)
+.|.+.+.......-.-....| .+.-.+.+.|++++|+..|-++. ..++...-.+.+.|-...+..+|++++-+..
T Consensus 507 dka~~~ykeal~ndasc~ealf-niglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALF-NIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHH-HhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 7777777666654221111122 23445778899999999998775 5677777788888999999999999998877
Q ss_pred HCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCChh
Q 037236 667 ALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKP-KLEHYACVVDMLGRAGKLDDAFKLIIEMP-EEADAG 743 (953)
Q Consensus 667 ~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~lv~~l~~~g~~~eA~~~~~~~~-~~~~~~ 743 (953)
. +-| |+..+.-|...|-+.|+-.+|.+++-.- |..-| ++++...|...|....-+++|+..|++.. .+|+.+
T Consensus 586 s--lip~dp~ilskl~dlydqegdksqafq~~yds---yryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~ 660 (840)
T KOG2003|consen 586 S--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDS---YRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQS 660 (840)
T ss_pred c--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhc---ccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHH
Confidence 7 567 7788889999999999999999886543 33445 48888889999999999999999999874 589999
Q ss_pred HHHHHHHHH-HhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCch
Q 037236 744 IWSSLLRSC-RTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWD 793 (953)
Q Consensus 744 ~~~~ll~~~-~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~ 793 (953)
-|..++..| ++.|++..|...++.+...-|+|....-.|..+....|..+
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~d 711 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLKD 711 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccchh
Confidence 999999998 67899999999999999999999999999999988888643
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=3.1e-11 Score=124.16 Aligned_cols=191 Identities=14% Similarity=0.218 Sum_probs=165.5
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 037236 607 DAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILM 682 (953)
Q Consensus 607 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~ 682 (953)
-+.+...+.+-|+-.++.++|...|++.. +.-...|+-|..-|....+...|++-+++.++ +.| |...|..|..
T Consensus 329 R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQ 406 (559)
T KOG1155|consen 329 RPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQ 406 (559)
T ss_pred CccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhH
Confidence 34566667788888999999999999877 34567899999999999999999999999999 788 8999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCCC--CChhHHHHHHHHHHhcCChh
Q 037236 683 ACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPEE--ADAGIWSSLLRSCRTYGALK 759 (953)
Q Consensus 683 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~ 759 (953)
+|.-.+...=|+-+|++..+ ++|+ ...|.+|.+.|.+.++++||++.|++...- .+..++..|...+...++.+
T Consensus 407 aYeim~Mh~YaLyYfqkA~~---~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~ 483 (559)
T KOG1155|consen 407 AYEIMKMHFYALYYFQKALE---LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLN 483 (559)
T ss_pred HHHHhcchHHHHHHHHHHHh---cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHH
Confidence 99999999999999999865 7776 888999999999999999999999987653 44588999999999999999
Q ss_pred HHHHHHHHHhc-------cCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 037236 760 MGEKVAKTLLE-------LEPDKAENYVLVSNIYAGSEKWDDVRMMRQRM 802 (953)
Q Consensus 760 ~a~~~~~~~~~-------l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 802 (953)
+|...+++-++ .+|+-..+..-|++-+.+.++|++|...-...
T Consensus 484 eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 484 EAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 99999999988 45655667778999999999999998765433
No 39
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=1.1e-10 Score=120.84 Aligned_cols=187 Identities=17% Similarity=0.219 Sum_probs=146.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHh
Q 037236 611 ACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNH 686 (953)
Q Consensus 611 ~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~ 686 (953)
|--+..+|....+.++-...|+... +.|+.+|..-...+.-.+++++|+.=|++.++ +.| +...|.-+.-+..+
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr 440 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAIS--LDPENAYAYIQLCCALYR 440 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhh--cChhhhHHHHHHHHHHHH
Confidence 5555666777777777777777665 34556666666666777888999999999888 678 56778888888888
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCC---------hhHHHHHHHHHHhc
Q 037236 687 AGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE-EAD---------AGIWSSLLRSCRTY 755 (953)
Q Consensus 687 ~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~~---------~~~~~~ll~~~~~~ 755 (953)
.+.++++...|++..+++ |+ ++.|+.....|...+++++|.+.|+.... +|+ +.+..+++-.-++
T Consensus 441 ~~k~~~~m~~Fee~kkkF---P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk- 516 (606)
T KOG0547|consen 441 QHKIAESMKTFEEAKKKF---PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWK- 516 (606)
T ss_pred HHHHHHHHHHHHHHHHhC---CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchh-
Confidence 889999999999987754 44 67888888999999999999998876542 333 3344444433333
Q ss_pred CChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 037236 756 GALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMK 803 (953)
Q Consensus 756 g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 803 (953)
+|+..|+..++++++++|.-..+|..|+.+-.+.|+.++|++++++-.
T Consensus 517 ~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 517 EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999987653
No 40
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.44 E-value=6.5e-12 Score=135.52 Aligned_cols=162 Identities=14% Similarity=0.144 Sum_probs=132.4
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHH
Q 037236 636 DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYA 714 (953)
Q Consensus 636 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 714 (953)
+..+.+|-++..+|.-+++.+.|++.|++.++ +.| ...+|..+..-+.....+|.|...|+..+ ..++.||+
T Consensus 418 ~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al-----~~~~rhYn 490 (638)
T KOG1126|consen 418 PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL-----GVDPRHYN 490 (638)
T ss_pred CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh-----cCCchhhH
Confidence 44677899999999999999999999998888 678 67788888878888888889999888774 34556665
Q ss_pred H---HHHHHhhcCCHHHHHHHHHhCCC-CC-ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 037236 715 C---VVDMLGRAGKLDDAFKLIIEMPE-EA-DAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGS 789 (953)
Q Consensus 715 ~---lv~~l~~~g~~~eA~~~~~~~~~-~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 789 (953)
+ |.-.|.|.++++.|+-.|+++.. .| +.++...++..+...|+.|+|...+++++-++|.|+..-+..+.++...
T Consensus 491 AwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~ 570 (638)
T KOG1126|consen 491 AWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSL 570 (638)
T ss_pred HHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhh
Confidence 5 45668889999999988887754 44 5667777777788888899999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHH
Q 037236 790 EKWDDVRMMRQRMKE 804 (953)
Q Consensus 790 g~~~~a~~~~~~m~~ 804 (953)
+++++|...++++++
T Consensus 571 ~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 571 GRYVEALQELEELKE 585 (638)
T ss_pred cchHHHHHHHHHHHH
Confidence 999999988888877
No 41
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.42 E-value=4.4e-09 Score=108.60 Aligned_cols=477 Identities=13% Similarity=0.101 Sum_probs=338.5
Q ss_pred cCChhHHHHHHhcCCC---CCcccHHHHHHHHHcCCChhHHHHHHHHHHhccCCCCCchh-hHHHHHHHhccccchHHHH
Q 037236 316 CGFLSEAQILFDKNNN---KNVVSWNTIIGAFSMAGDVCGTFDLLRKMQMKEEEMKPNEV-TVLNVLTSCSEKSELLSLK 391 (953)
Q Consensus 316 ~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~p~~~-t~~~ll~~~~~~~~~~~a~ 391 (953)
.+++..|+.+|++... +++..|--.+..=.++.....|..++++.... -|-.. .+.--+..=...|++..++
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~----lPRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI----LPRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh----cchHHHHHHHHHHHHHHhcccHHHH
Confidence 4566777888876543 56667777777778888888888888877653 33332 2233333445568888889
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCCcccHHHHhccC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCC
Q 037236 392 ELHGYSLRHGFDNDELVANAFVVAYAKCGSEISAENVFHGM--DSRTVSSWNALICGYAQNGDHLKALDYFLQMTHSDLE 469 (953)
Q Consensus 392 ~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 469 (953)
++|..-.+ ..|+...+.+.|+.=.+-..++.|+.++++. ..|++..|--...-=.+.|+..-|..+|....+. -
T Consensus 162 qiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~ 237 (677)
T KOG1915|consen 162 QIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--L 237 (677)
T ss_pred HHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--h
Confidence 98887665 5788999999999999999999999999874 4688888888888888889999999888887763 1
Q ss_pred CCcchHHHHHHhhc----cccccchhhHHHHHHHHhCCCCc-hhhHhhHHHHHHhcCCh---hHHHHH-----HHhcccC
Q 037236 470 PDLFSIGSLILACT----HLKSLHRGKEIHGFVIRNGLEGD-SFTGISLLSLYMHCEKS---SSARVL-----FDEMEDK 536 (953)
Q Consensus 470 p~~~t~~~ll~~~~----~~~~~~~a~~i~~~~~~~g~~~~-~~~~~~li~~y~~~g~~---~~A~~~-----f~~~~~~ 536 (953)
.|...-..++.+++ +...++.+.-++...+..-+... ...|..+...--+-|+. +++.-- ++.+...
T Consensus 238 ~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~ 317 (677)
T KOG1915|consen 238 GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK 317 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh
Confidence 23333334444443 45678889999998887654432 34444455444455554 333322 2333333
Q ss_pred ---CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChh-------hHHHHHHHh---ccccchHHHHHHHHHHHHcC
Q 037236 537 ---SLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEI-------SIVSILSAC---SQLSALRLGKETHCYALKAI 603 (953)
Q Consensus 537 ---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~ll~a~---~~~~~~~~a~~~~~~~~~~~ 603 (953)
|-.+|--.+..--..|+.+...++|++.+.. ++|-.. .|.-+=-+| ....+.+.+++++...++ -
T Consensus 318 np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-l 395 (677)
T KOG1915|consen 318 NPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-L 395 (677)
T ss_pred CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-h
Confidence 4457777777777889999999999999865 455321 111111122 346788999999998888 3
Q ss_pred CCCCccHHHHHHHHHH----hcCCHHHHHHHhhhcC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHH
Q 037236 604 LTNDAFVACSIIDMYA----KCGCLEQSRRVFDRLK--DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFT 676 (953)
Q Consensus 604 ~~~~~~~~~~li~~y~----~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t 676 (953)
++...+++.-+--||+ ++.++..|.+++.... .|...++...|..-.+.++++....++++.++ ..| |-.+
T Consensus 396 IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle--~~Pe~c~~ 473 (677)
T KOG1915|consen 396 IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE--FSPENCYA 473 (677)
T ss_pred cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--cChHhhHH
Confidence 4556677777666665 7889999999999877 67788888889988999999999999999999 678 7788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCChhHHHHHHHHHH--
Q 037236 677 FVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPE-EADAGIWSSLLRSCR-- 753 (953)
Q Consensus 677 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~~~~~~~~ll~~~~-- 753 (953)
|......-...|+.|.|..+|+-++....+..-.-.|...||.=...|.++.|..++++... .+-..+|-++..--.
T Consensus 474 W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~ 553 (677)
T KOG1915|consen 474 WSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASA 553 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccc
Confidence 98888888899999999999999976444333355677788888899999999999999876 455668988876544
Q ss_pred ---hcC-----------ChhHHHHHHHHHhcc----CCCCcc--hHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 754 ---TYG-----------ALKMGEKVAKTLLEL----EPDKAE--NYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 754 ---~~g-----------~~~~a~~~~~~~~~l----~p~~~~--~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
..+ ++..|..+++++... .|.... .+...-++-...|.-.+...+.++|.+
T Consensus 554 ~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk 624 (677)
T KOG1915|consen 554 SEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPK 624 (677)
T ss_pred cccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccH
Confidence 233 566788888887764 332222 222333455566777777777776643
No 42
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=2.9e-07 Score=103.42 Aligned_cols=567 Identities=14% Similarity=0.149 Sum_probs=314.0
Q ss_pred HHHHhCCCCChhHHHHHHHHhhccCChHHHHHHhccCCC--CCeecHHHHHHHHHcCCCchHHHHHHHHhhhccCCCCCC
Q 037236 190 MAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE--RNLVSWNSIICGSSENGFSCESFDLLIKMMGCEEGFIPD 267 (953)
Q Consensus 190 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~ 267 (953)
...+.|..||.. -++....+ -+.+.+.++...|++ +.....+.+...+...+....+..++-.. ..+..|+
T Consensus 503 Y~kKvGyTPdym---flLq~l~r-~sPD~~~qFa~~l~Q~~~~~~die~I~DlFme~N~iQq~TSFLLda---LK~~~Pd 575 (1666)
T KOG0985|consen 503 YAKKVGYTPDYM---FLLQQLKR-SSPDQALQFAMMLVQDEEPLADIEQIVDLFMELNLIQQCTSFLLDA---LKLNSPD 575 (1666)
T ss_pred HHHHcCCCccHH---HHHHHHHc-cChhHHHHHHHHhhccCCCcccHHHHHHHHHHHHhhhhhHHHHHHH---hcCCChh
Confidence 345667777743 34444444 567888887777765 44566788888888888888888777776 4556666
Q ss_pred hhhHHHHHHhhhcCCCchHHHHHHHHHHHhCCCCCchHHHHHHHhhHhcCChhHHHHHHhcCCC--CCcccHHH----HH
Q 037236 268 VATVVTVLPVCAGEGNVDLGILVHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFDKNNN--KNVVSWNT----II 341 (953)
Q Consensus 268 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~d~~~~~~----li 341 (953)
....-+-+---.-.+.+..|..+ +-.+.- ..+-+..+.+.|.+.|-...|++.+..+.. |.++.-+. -+
T Consensus 576 ~g~LQTrLLE~NL~~aPqVADAI----LgN~mF-tHyDra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwL 650 (1666)
T KOG0985|consen 576 EGHLQTRLLEMNLVHAPQVADAI----LGNDMF-THYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWL 650 (1666)
T ss_pred hhhHHHHHHHHHhccchHHHHHH----Hhcccc-ccccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHH
Confidence 55443322222222223333222 222211 122256778888999999999988876553 22221111 13
Q ss_pred HHHHcCCChhHHHHHHHHHHhccCCCCCchhhHHHHHHHhccccchHHHHHHHHHHHH-----------cCCCCchhHHH
Q 037236 342 GAFSMAGDVCGTFDLLRKMQMKEEEMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLR-----------HGFDNDELVAN 410 (953)
Q Consensus 342 ~~~~~~g~~~~A~~l~~~m~~~g~~~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~-----------~g~~~~~~~~~ 410 (953)
..|...-.++++++.++.|...+ ++.|..+...+..-+...-..+...++|+.... .++..|+.+.-
T Consensus 651 v~yFg~lsve~s~eclkaml~~N--irqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~ 728 (1666)
T KOG0985|consen 651 VNYFGSLSVEDSLECLKAMLSAN--IRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHF 728 (1666)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHH
Confidence 45556667899999999999887 777766655554444433323333333332221 14566778888
Q ss_pred HHHHHHHhcCCcccHHHHhccCCCC-------------------------------ChhhH------HHHHHHHHhcCCh
Q 037236 411 AFVVAYAKCGSEISAENVFHGMDSR-------------------------------TVSSW------NALICGYAQNGDH 453 (953)
Q Consensus 411 ~li~~y~~~g~~~~A~~~f~~~~~~-------------------------------~~~~~------~~li~~~~~~g~~ 453 (953)
..|.+-++.|++.+.+++.++-.-- |.+.| ...|..|++.=++
T Consensus 729 KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNp 808 (1666)
T KOG0985|consen 729 KYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNP 808 (1666)
T ss_pred HHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCC
Confidence 8999999999999998887653210 11111 1223444443222
Q ss_pred HHHHHHHHHhhhCCCCC-----------CcchHHHHHHhhccccccchhhHHHHHHHHhCCCCchhhHhhHHHHHHhcCC
Q 037236 454 LKALDYFLQMTHSDLEP-----------DLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEK 522 (953)
Q Consensus 454 ~~A~~~~~~m~~~g~~p-----------~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~ 522 (953)
...-.+.-.+++-...- ..+...-+..-+.+.+++..-...++..+..|.. |..++|+|...|..+++
T Consensus 809 s~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNN 887 (1666)
T KOG0985|consen 809 SRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNN 887 (1666)
T ss_pred cccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCC
Confidence 22211111111100000 0001111222233344444455555555555644 56666666665554332
Q ss_pred hhH----------------------------------------------------------------HHHHHH-------
Q 037236 523 SSS----------------------------------------------------------------ARVLFD------- 531 (953)
Q Consensus 523 ~~~----------------------------------------------------------------A~~~f~------- 531 (953)
-.+ -.+++.
T Consensus 888 nPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rR 967 (1666)
T KOG0985|consen 888 NPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRR 967 (1666)
T ss_pred ChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHH
Confidence 111 111110
Q ss_pred ----hcc------cCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhh----HHHHHHHhccccchHHHHHHHH
Q 037236 532 ----EME------DKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEIS----IVSILSACSQLSALRLGKETHC 597 (953)
Q Consensus 532 ----~~~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~a~~~~~~~~~a~~~~~ 597 (953)
+.. ..|+..-+.-+.++...+-+.+-+++++++.-. |+.++ +..+|---+-..+.....++..
T Consensus 968 qLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~---~S~Fse~~nLQnLLiLtAikad~trVm~YI~ 1044 (1666)
T KOG0985|consen 968 QLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLD---NSVFSENRNLQNLLILTAIKADRTRVMEYIN 1044 (1666)
T ss_pred HHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcC---CcccccchhhhhhHHHHHhhcChHHHHHHHH
Confidence 000 012222223344445555555555555555421 11111 1111100000001111111111
Q ss_pred HHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC-------------------------CCCHHHHHHHHHHHHhc
Q 037236 598 YALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK-------------------------DKDVTSWNAIIGGHGIH 652 (953)
Q Consensus 598 ~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------------------------~~~~~~~~~li~~~~~~ 652 (953)
.+-.. + .-.+.......+-+++|..+|++.. -..+..|..+..+-.+.
T Consensus 1045 rLdny--D-----a~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~ 1117 (1666)
T KOG0985|consen 1045 RLDNY--D-----APDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQG 1117 (1666)
T ss_pred HhccC--C-----chhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhc
Confidence 11000 0 0001112222333444444444322 01345799999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHH
Q 037236 653 GYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKL 732 (953)
Q Consensus 653 g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~ 732 (953)
|...+|++-|-+. -|+..|.-++.++++.|.+++-.+++...+ +..-+|.++ +.|+-+|++.+++.|-+++
T Consensus 1118 ~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaR-kk~~E~~id--~eLi~AyAkt~rl~elE~f 1188 (1666)
T KOG0985|consen 1118 GLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMAR-KKVREPYID--SELIFAYAKTNRLTELEEF 1188 (1666)
T ss_pred CchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHH-HhhcCccch--HHHHHHHHHhchHHHHHHH
Confidence 9999999887432 367889999999999999999999987664 455566554 5789999999999998887
Q ss_pred HHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 037236 733 IIEMPEEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRM 802 (953)
Q Consensus 733 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 802 (953)
+. -||..-....+.-|...|.++.|.-.+.. .+.+..|+..+...|.+..|...-++.
T Consensus 1189 i~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1189 IA----GPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred hc----CCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 74 47888888999999999999999887764 456777788888888888777654443
No 43
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.39 E-value=2.1e-11 Score=131.70 Aligned_cols=271 Identities=13% Similarity=0.065 Sum_probs=207.7
Q ss_pred ChhHHHHHHHhccc--CCcc-cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC----ChhhHHHHHHHhccccchHHHHH
Q 037236 522 KSSSARVLFDEMED--KSLV-SWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQP----CEISIVSILSACSQLSALRLGKE 594 (953)
Q Consensus 522 ~~~~A~~~f~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~a~~~~~~~~~a~~ 594 (953)
+..+|...|..++. .|.. ....+..+|...+++++|.++|+...+. .| +...|.++|--. .+ +-+..
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~--~p~rv~~meiyST~LWHL---q~-~v~Ls 407 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRI--EPYRVKGMEIYSTTLWHL---QD-EVALS 407 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccccccchhHHHHHHHHH---Hh-hHHHH
Confidence 45678888887654 3433 2234566788888888888888888764 33 223444443221 11 01111
Q ss_pred HHH-HHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 037236 595 THC-YALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKD---KDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGH 670 (953)
Q Consensus 595 ~~~-~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 670 (953)
.+. .+++. -+..+.+|.++.+.|+-+++.+.|++.|++..+ ....+|+-+..-+.....+|+|...|+..+. +
T Consensus 408 ~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~ 484 (638)
T KOG1126|consen 408 YLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--V 484 (638)
T ss_pred HHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--C
Confidence 111 12222 233788999999999999999999999999874 3567888888888999999999999999887 6
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHH
Q 037236 671 KP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWS 746 (953)
Q Consensus 671 ~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~ 746 (953)
.| +...|..+...|.+.++++.|.-.|+.+++ +.|. .....++...+-+.|+.|+|+++++++.. +.|+..--
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~ 561 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKY 561 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHH
Confidence 78 567899999999999999999999998865 8888 55667788899999999999999998753 34555544
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 747 SLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 747 ~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
--+..+...++.++|...+|++-++-|+++..|.+++.+|...|+.+.|..-+..+-+
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 5556677789999999999999999999999999999999999999999887766654
No 44
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.36 E-value=2e-10 Score=127.17 Aligned_cols=255 Identities=12% Similarity=-0.012 Sum_probs=154.9
Q ss_pred ccccccchhhHHHHHHHHhCCCCchhhHhhHHHHHHhcCChhHHHHHHHhcccC---CcccHHHHHHHHHhcCChhHHHH
Q 037236 483 THLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMEDK---SLVSWNTMIAGYSQNKLPVEAIV 559 (953)
Q Consensus 483 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~ 559 (953)
...|+.+.+.+.+..+.+....+...........+...|+++.|...++.+.+. +......+...|.+.|++++|++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~ 208 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLD 208 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHH
Confidence 344444444444444443222222222223356677788888888888877642 44566777788888888888888
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---C
Q 037236 560 LFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---D 636 (953)
Q Consensus 560 ~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~ 636 (953)
++..+.+.+..++. ....+- ...+..++....+..+.+...++++.++ +
T Consensus 209 ~l~~l~k~~~~~~~-~~~~l~---------------------------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~ 260 (398)
T PRK10747 209 ILPSMAKAHVGDEE-HRAMLE---------------------------QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTR 260 (398)
T ss_pred HHHHHHHcCCCCHH-HHHHHH---------------------------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHh
Confidence 88888876544321 111000 0011122222233334555556666554 3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHH
Q 037236 637 KDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYAC 715 (953)
Q Consensus 637 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ 715 (953)
.++.....+..++...|+.++|.+++++..+. .||.... ++.+....++.+++.+..+...+. .|+ +..+.+
T Consensus 261 ~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~---~P~~~~l~l~ 333 (398)
T PRK10747 261 HQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ---HGDTPLLWST 333 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh---CCCCHHHHHH
Confidence 46667777777777778888887777777763 3444211 223333457777777777777653 344 455667
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCC-CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 037236 716 VVDMLGRAGKLDDAFKLIIEMPE-EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELE 772 (953)
Q Consensus 716 lv~~l~~~g~~~eA~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~ 772 (953)
+..++.+.|++++|.+.|+.+.. .|+...+..+...+...|+.+.|...+++.+.+-
T Consensus 334 lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 334 LGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 77777788888888877776654 5777777777777777888888888888777653
No 45
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.36 E-value=3.6e-10 Score=115.37 Aligned_cols=168 Identities=15% Similarity=0.187 Sum_probs=88.3
Q ss_pred HHhcCChhHHHHHHHhcc---cCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHH
Q 037236 517 YMHCEKSSSARVLFDEME---DKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGK 593 (953)
Q Consensus 517 y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 593 (953)
+-+.|++++|+..|-.+. ..++.....+...|-...++..|++++-+. ..+-|+
T Consensus 534 ~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~--~slip~--------------------- 590 (840)
T KOG2003|consen 534 AEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQA--NSLIPN--------------------- 590 (840)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh--cccCCC---------------------
Confidence 444566666666665443 233334444455555555555555555332 223333
Q ss_pred HHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 037236 594 ETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGH 670 (953)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 670 (953)
|+.+.+-|.+.|-+.|+-..|.+.+-.-- +-|+.+..=|..-|....-+++|+..|++..- +
T Consensus 591 -------------dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--i 655 (840)
T KOG2003|consen 591 -------------DPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--I 655 (840)
T ss_pred -------------CHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--c
Confidence 55566666666666666666655543322 23444333344445555556666666666555 5
Q ss_pred CCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcC
Q 037236 671 KPDTFTFVGILMACN-HAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAG 724 (953)
Q Consensus 671 ~P~~~t~~~ll~a~~-~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g 724 (953)
.|+.+-|-.++..|. +.|++.+|..+++...++ +..+.+...-||...+..|
T Consensus 656 qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk--fpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 656 QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK--FPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--CccchHHHHHHHHHhcccc
Confidence 666666665555443 456666666666665432 3334555555555555444
No 46
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=2.2e-09 Score=113.74 Aligned_cols=192 Identities=15% Similarity=0.089 Sum_probs=158.8
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHhhhcCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 037236 607 DAFVACSIIDMYAKCGCLEQSRRVFDRLKDK---DVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILM 682 (953)
Q Consensus 607 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~ 682 (953)
.+.+|-++.--|.-.|+..+|++.|.+...- -...|-.....|+-.|..++|+..+...-+ .-| ....+.-+..
T Consensus 311 ~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAar--l~~G~hlP~LYlgm 388 (611)
T KOG1173|consen 311 KALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAAR--LMPGCHLPSLYLGM 388 (611)
T ss_pred CCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHH--hccCCcchHHHHHH
Confidence 6677888888888889999999999987632 345899999999999999999999988877 344 4455666777
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--------CC-ChhHHHHHHHHH
Q 037236 683 ACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--------EA-DAGIWSSLLRSC 752 (953)
Q Consensus 683 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--------~~-~~~~~~~ll~~~ 752 (953)
-|...+..+-|.++|.+.. ++.|+ +-.++-+.-+....+.+.+|..+|+.... .+ =..+|+.|+.+|
T Consensus 389 ey~~t~n~kLAe~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~ 465 (611)
T KOG1173|consen 389 EYMRTNNLKLAEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAY 465 (611)
T ss_pred HHHHhccHHHHHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHH
Confidence 8889999999999999875 46676 55566666667778899999999876642 11 234689999999
Q ss_pred HhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 037236 753 RTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMK 803 (953)
Q Consensus 753 ~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 803 (953)
++.+.+++|...+++++.+.|.++.+|-.++-+|...|+.+.|...+.+.-
T Consensus 466 Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 466 RKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999877554
No 47
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.32 E-value=1.9e-10 Score=118.39 Aligned_cols=196 Identities=15% Similarity=0.077 Sum_probs=167.7
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 037236 607 DAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILM 682 (953)
Q Consensus 607 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~ 682 (953)
....+..+...|.+.|++++|...|++.. +.+...|..+...|...|++++|++.+++..+. .| +...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTL--NPNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHH
Confidence 45667788899999999999999999875 345778888999999999999999999999984 45 5677888889
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC-C-CChhHHHHHHHHHHhcCChhH
Q 037236 683 ACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPE-E-ADAGIWSSLLRSCRTYGALKM 760 (953)
Q Consensus 683 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~-~~~~~~~~ll~~~~~~g~~~~ 760 (953)
.+...|++++|.++++.+.+..........+..+...+.+.|++++|.+.+++... . .+...|..+...+...|+++.
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999976322222356677889999999999999999987754 3 346688889999999999999
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 761 GEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 761 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
|...++++++..|+++..+..++.++...|++++|..+.+.+..
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999998887765
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.32 E-value=1.4e-09 Score=121.20 Aligned_cols=289 Identities=12% Similarity=0.002 Sum_probs=157.1
Q ss_pred hcCChHHHHHHHHHhhhCCCCCCcch-HHHHHHhhccccccchhhHHHHHHHHhCCCCchhhHhhHHHHHHhcCChhHHH
Q 037236 449 QNGDHLKALDYFLQMTHSDLEPDLFS-IGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSAR 527 (953)
Q Consensus 449 ~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 527 (953)
..|+++.|.+.+.+..+. .|+... +.....+....|+.+.+.+.+....+....+...+.-.....+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 457777777777665543 333222 22233444555666666666666554443333333444466667777777777
Q ss_pred HHHHhcccC---CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCC
Q 037236 528 VLFDEMEDK---SLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAIL 604 (953)
Q Consensus 528 ~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~ 604 (953)
..++.+.+. +...+..+...|.+.|++++|.+++..+.+.++.++. .+..+-.
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~-~~~~l~~----------------------- 229 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDE-EFADLEQ----------------------- 229 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHH-HHHHHHH-----------------------
Confidence 777776542 4445666777777777777777777777776533211 1100000
Q ss_pred CCCccHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH---H
Q 037236 605 TNDAFVACSIIDMYAKCGCLEQSRRVFDRLKD---KDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTF---V 678 (953)
Q Consensus 605 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~---~ 678 (953)
..+..+++.-......+...+.+...+. +++..+..++..+...|+.++|.+++++..+. .||.... .
T Consensus 230 ----~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~ 303 (409)
T TIGR00540 230 ----KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPL 303 (409)
T ss_pred ----HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHH
Confidence 0011111111112223444455555542 47778888888888888888888888888884 5554321 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHh--C-CCCCChhHHHHHHHHHHhc
Q 037236 679 GILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIE--M-PEEADAGIWSSLLRSCRTY 755 (953)
Q Consensus 679 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~--~-~~~~~~~~~~~ll~~~~~~ 755 (953)
.........++.+.+.+.++...+..+-.|+.....++..++.+.|++++|.+.|+. . ...|+..++..+...+...
T Consensus 304 l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~ 383 (409)
T TIGR00540 304 CLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQA 383 (409)
T ss_pred HHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHc
Confidence 111222334666666666666655333222223444555666666666666666652 2 2245555555555555555
Q ss_pred CChhHHHHHHHHHh
Q 037236 756 GALKMGEKVAKTLL 769 (953)
Q Consensus 756 g~~~~a~~~~~~~~ 769 (953)
|+.+.|.+.+++.+
T Consensus 384 g~~~~A~~~~~~~l 397 (409)
T TIGR00540 384 GDKAEAAAMRQDSL 397 (409)
T ss_pred CCHHHHHHHHHHHH
Confidence 55555555555543
No 49
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.31 E-value=7.6e-10 Score=122.59 Aligned_cols=273 Identities=10% Similarity=0.032 Sum_probs=192.3
Q ss_pred cCChhHHHHHHHhcccC--CcccHHHH-HHHHHhcCChhHHHHHHHHHHHcCCCCChhhHH--HHHHHhccccchHHHHH
Q 037236 520 CEKSSSARVLFDEMEDK--SLVSWNTM-IAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIV--SILSACSQLSALRLGKE 594 (953)
Q Consensus 520 ~g~~~~A~~~f~~~~~~--~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~a~~~~~~~~~a~~ 594 (953)
.|+++.|++.+....+. ++..+..+ .....+.|+++.|.+.|.++.+. .|+..... .....+...|+.+.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 47777777776665442 12222222 22336677777777777777654 45543332 22335566777777777
Q ss_pred HHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCCC---CH--------HHHHHHHHHHHhcCChHHHHHHHH
Q 037236 595 THCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKDK---DV--------TSWNAIIGGHGIHGYGKEAIELFE 663 (953)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~--------~~~~~li~~~~~~g~~~~A~~l~~ 663 (953)
.++.+.+.... ++.+...+...|.+.|++++|.+++..+.+. +. ..|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 77777766533 6777888899999999999999998888732 11 133344444444455566666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CC-C
Q 037236 664 KMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPE-EA-D 741 (953)
Q Consensus 664 ~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~-~ 741 (953)
++-+. .+.+......+..++...|+.++|.+.+++..+ ..|+.... ++......|+.+++++.+++... .| |
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 65432 233777888999999999999999999998865 34544321 23333455999999999988764 45 5
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 037236 742 AGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRM 802 (953)
Q Consensus 742 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 802 (953)
+....++...|...|+++.|+..++++++.+|++ ..+..|+.++.+.|+.++|.+.+++-
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6678899999999999999999999999999975 45789999999999999999987754
No 50
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.30 E-value=8.4e-12 Score=132.01 Aligned_cols=250 Identities=12% Similarity=0.104 Sum_probs=103.0
Q ss_pred HHHHHHhcCChhHHHHHHHh-ccc----CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhcccc
Q 037236 513 LLSLYMHCEKSSSARVLFDE-MED----KSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLS 587 (953)
Q Consensus 513 li~~y~~~g~~~~A~~~f~~-~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 587 (953)
+..++.+.|++++|.++++. +.. .|..-|..+.......+++++|++.++++...+.. +...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 34556666666666666643 221 23344555555555566677777777766654322 23333333333 4566
Q ss_pred chHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC-----CCCHHHHHHHHHHHHhcCChHHHHHHH
Q 037236 588 ALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK-----DKDVTSWNAIIGGHGIHGYGKEAIELF 662 (953)
Q Consensus 588 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~ 662 (953)
+.+.|.++.....+.. ++...+..++..|.+.|+++++..+++.+. +.+...|..+...+.+.|+.++|++.+
T Consensus 92 ~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6666666655443332 355566677788888889988888888754 357778888888899999999999999
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC--C
Q 037236 663 EKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPE--E 739 (953)
Q Consensus 663 ~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~ 739 (953)
++.++ ..| |......++..+...|+.+++.++++...+.. ..++..+..+..+|...|+.++|+..+++... +
T Consensus 170 ~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 170 RKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp HHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred HHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHHHHHHHHHHHhccccccccccccccccccccc
Confidence 99998 578 46667788888889999999888888886643 33456677888899999999999999988654 3
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 037236 740 ADAGIWSSLLRSCRTYGALKMGEKVAKTLLE 770 (953)
Q Consensus 740 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 770 (953)
.|+.+...+..++...|+.+.|..+.+++++
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 4778888888899999999999998888765
No 51
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=2.3e-08 Score=103.41 Aligned_cols=128 Identities=12% Similarity=0.143 Sum_probs=68.3
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037236 607 DAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMA 683 (953)
Q Consensus 607 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a 683 (953)
|-..|-.|..+|.-.+...-|.-.|++.. +.|...|.+|..+|.+.++.++|++.|.+....| ..+...+..|...
T Consensus 397 DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakL 475 (559)
T KOG1155|consen 397 DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKL 475 (559)
T ss_pred hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHH
Confidence 44455555566666666666666665544 3455566666666666666666666666665543 2244556666666
Q ss_pred HHhcCCHHHHHHHHHHHHHhc---C-CCCC-hhHHHHHHHHHhhcCCHHHHHHHHHh
Q 037236 684 CNHAGLVENGLKYFSQMQKLH---A-VKPK-LEHYACVVDMLGRAGKLDDAFKLIIE 735 (953)
Q Consensus 684 ~~~~g~~~~a~~~~~~m~~~~---~-~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~ 735 (953)
+.+.++.++|..+|+.-++.. | +.|. .....-|..-+.+.+++++|......
T Consensus 476 ye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~ 532 (559)
T KOG1155|consen 476 YEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATL 532 (559)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 666666666666655554432 1 1221 22222344445555566655554433
No 52
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.27 E-value=2.3e-09 Score=119.54 Aligned_cols=274 Identities=11% Similarity=0.007 Sum_probs=173.5
Q ss_pred cCChhHHHHHHHhcccC--Cc-ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChh--hHHHHHHHhccccchHHHHH
Q 037236 520 CEKSSSARVLFDEMEDK--SL-VSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEI--SIVSILSACSQLSALRLGKE 594 (953)
Q Consensus 520 ~g~~~~A~~~f~~~~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~~~~~~a~~ 594 (953)
.|+++.|.+.+.+..+. +. ..+-.....+.+.|++++|.+.|.+..+. .|+.. .-..........|+.+.|..
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 45555555555544432 11 11222233444556666666666655443 23322 11112334444555666666
Q ss_pred HHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCC---CCHHHHH----HHHHHHHhcCChHHHHHHHHHHHH
Q 037236 595 THCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKD---KDVTSWN----AIIGGHGIHGYGKEAIELFEKMLA 667 (953)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~----~li~~~~~~g~~~~A~~l~~~m~~ 667 (953)
.++.+.+.... ++.+...+..+|...|++++|.+.+....+ .+...+. ....++...+..+++.+.+.++.+
T Consensus 175 ~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 175 GVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 66555555432 556677788888888888888888887763 2322221 111122333344444556666665
Q ss_pred CCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhH---HHHHHHHHhhcCCHHHHHHHHHhCCC-
Q 037236 668 LGHKP-----DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEH---YACVVDMLGRAGKLDDAFKLIIEMPE- 738 (953)
Q Consensus 668 ~g~~P-----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~---~~~lv~~l~~~g~~~eA~~~~~~~~~- 738 (953)
. .| +...+..+...+...|+.++|.+.+++..+. .|+... .....-.....++.+++++.+++...
T Consensus 254 ~--~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 254 N--QPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred H--CCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 3 34 6778888999999999999999999999773 454321 11122222345788888888877653
Q ss_pred CC-Ch--hHHHHHHHHHHhcCChhHHHHHHH--HHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 037236 739 EA-DA--GIWSSLLRSCRTYGALKMGEKVAK--TLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRM 802 (953)
Q Consensus 739 ~~-~~--~~~~~ll~~~~~~g~~~~a~~~~~--~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 802 (953)
.| |+ ....++++.|...|+++.|.+.++ .+++..|++.. +..|+.++.+.|+.++|.+++++-
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34 45 678899999999999999999999 67788886655 669999999999999999988764
No 53
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.24 E-value=1e-06 Score=94.92 Aligned_cols=242 Identities=11% Similarity=0.045 Sum_probs=151.8
Q ss_pred CCCcccHHHHHHHHHhcCCCHHHHHHHHHHhhc-CCCChhHHHHHHHH--------hccCCChhHHHHHHHHHhhhcCCC
Q 037236 25 STEGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQA--------CGHEKDIEIGKRVHELISASTQFS 95 (953)
Q Consensus 25 ~~~~~~~~~~i~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~ll~~--------~~~~~~~~~a~~~~~~~~~~~~~~ 95 (953)
+-++.+|---|...... ..++-..+|.++.. .|.+...+-..|+. |-....+......|++.+ .. ++
T Consensus 24 p~svk~W~RYIe~k~~s--p~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~l-v~-mH 99 (835)
T KOG2047|consen 24 PFSVKCWLRYIEHKAGS--PDKQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCL-VF-MH 99 (835)
T ss_pred chhHHHHHHHHHHHccC--ChHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHH-HH-Hh
Confidence 34566777666655442 45566677887777 66565555554422 111122233333333332 11 12
Q ss_pred CCchhhhHHHHHHHhcCChhhHHHHhhcCCC-----CCchhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcccHHH
Q 037236 96 NDFIINTRLITMYSLCGFPLDSRRVFDSLKT-----RNLFQWNALVSGFTKNELYPDVLSIFVELLSDTELKPDNFTFPC 170 (953)
Q Consensus 96 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~ 170 (953)
.-+.+|-.-+....++|++..-+..|++.-. .....|...+.-....|-++-++.+|++..+ +.|.. -.-
T Consensus 100 kmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk---~~P~~--~ee 174 (835)
T KOG2047|consen 100 KMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK---VAPEA--REE 174 (835)
T ss_pred cCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh---cCHHH--HHH
Confidence 3456676677778889999999999987422 2334688888888888889999999999877 44543 667
Q ss_pred HHHHhhcCCChhhHhHHHHHHHHhC------CCCChhHHHHHHHHhhccCChH---HHHHHhccCCC--CCe--ecHHHH
Q 037236 171 VIKACGGIADVSFGSGVHGMAAKMG------LIGDVFVSNALIAMYGKCAFVE---EMVKLFEVMPE--RNL--VSWNSI 237 (953)
Q Consensus 171 ll~~~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~li~~~~~~g~~~---~A~~~f~~m~~--~~~--~~~~~l 237 (953)
.|..++..++..+|.+.+..++... ...+-..|.-+.+..++.-+.- ....+++.+.. +|. ..|++|
T Consensus 175 yie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SL 254 (835)
T KOG2047|consen 175 YIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSL 254 (835)
T ss_pred HHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHH
Confidence 7778888999999999888876542 2345566777766666553321 22334444443 333 368999
Q ss_pred HHHHHcCCCchHHHHHHHHhhhccCCCCCChhhHHHHHHhhh
Q 037236 238 ICGSSENGFSCESFDLLIKMMGCEEGFIPDVATVVTVLPVCA 279 (953)
Q Consensus 238 i~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~ 279 (953)
..-|.+.|.+++|.++|++.+ .. ..+...|+.+.++++
T Consensus 255 AdYYIr~g~~ekarDvyeeai--~~--v~tvrDFt~ifd~Ya 292 (835)
T KOG2047|consen 255 ADYYIRSGLFEKARDVYEEAI--QT--VMTVRDFTQIFDAYA 292 (835)
T ss_pred HHHHHHhhhhHHHHHHHHHHH--Hh--heehhhHHHHHHHHH
Confidence 999999999999999998872 21 112334555555554
No 54
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.23 E-value=6e-07 Score=93.20 Aligned_cols=415 Identities=12% Similarity=0.087 Sum_probs=243.3
Q ss_pred ccCChHHHHHHhccCCC---CCeecHHHHHHHHHcCCCchHHHHHHHHhhhccCCCCCChhhHHHHHHhhhcCCCchHHH
Q 037236 212 KCAFVEEMVKLFEVMPE---RNLVSWNSIICGSSENGFSCESFDLLIKMMGCEEGFIPDVATVVTVLPVCAGEGNVDLGI 288 (953)
Q Consensus 212 ~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 288 (953)
..+++..|+.+|++... +++..|---+..=.++.....|..++++. ...-...|.. |.--+..=-..|++..|.
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRA--vt~lPRVdql-WyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRA--VTILPRVDQL-WYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHH--HHhcchHHHH-HHHHHHHHHHhcccHHHH
Confidence 34667788888887664 56666777777777888888888888887 2222222222 222223334568888899
Q ss_pred HHHHHHHHhCCCCCchHHHHHHHhhHhcCChhHHHHHHhc--CCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHhccCC
Q 037236 289 LVHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFDK--NNNKNVVSWNTIIGAFSMAGDVCGTFDLLRKMQMKEEE 366 (953)
Q Consensus 289 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~--~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 366 (953)
++|....+- +|+...|++.|+.=.+...++.|+.++++ +..|++.+|--...-=.++|....|..+|....+.-..
T Consensus 162 qiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~ 239 (677)
T KOG1915|consen 162 QIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD 239 (677)
T ss_pred HHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh
Confidence 999887754 78999999999999999999999999987 44688888888888778889888888888877653100
Q ss_pred CCCchhhHHHHHHHhccccchHHHHHHHHHHHHcCCCC-chhHHHHHHHHHHhcCCcccHHHHhc--------cCCCC--
Q 037236 367 MKPNEVTVLNVLTSCSEKSELLSLKELHGYSLRHGFDN-DELVANAFVVAYAKCGSEISAENVFH--------GMDSR-- 435 (953)
Q Consensus 367 ~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~~f~--------~~~~~-- 435 (953)
-..+...|.+....=.+...++.++-|+...+.+-... ....|..+...=-+.|+........- .+...
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np 319 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNP 319 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCC
Confidence 11122233333333345677888888888887753222 14456666655556666544443321 11122
Q ss_pred -ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcc-------hHHHHHHhh---ccccccchhhHHHHHHHHhCCC
Q 037236 436 -TVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLF-------SIGSLILAC---THLKSLHRGKEIHGFVIRNGLE 504 (953)
Q Consensus 436 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~ll~~~---~~~~~~~~a~~i~~~~~~~g~~ 504 (953)
|-.+|-..+..--..|+.+...++|++.+.. ++|-.. .|.-+=-+| ....+.+..+++++..++ -++
T Consensus 320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIP 397 (677)
T KOG1915|consen 320 YNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIP 397 (677)
T ss_pred CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcC
Confidence 4456666777777778888888888888764 455221 111111111 234566666666666665 223
Q ss_pred CchhhHhhHHHHHH----hcCChhHHHHHHHhcccCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHH
Q 037236 505 GDSFTGISLLSLYM----HCEKSSSARVLFDEMEDKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSIL 580 (953)
Q Consensus 505 ~~~~~~~~li~~y~----~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 580 (953)
...+++..+=-+|+ ++.++..|++++.... |.-|-..+|...+
T Consensus 398 HkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI---------------------------------G~cPK~KlFk~YI 444 (677)
T KOG1915|consen 398 HKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI---------------------------------GKCPKDKLFKGYI 444 (677)
T ss_pred cccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---------------------------------ccCCchhHHHHHH
Confidence 33444444444443 3445555555554433 2334444444444
Q ss_pred HHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC-CC----CHHHHHHHHHHHHhcCCh
Q 037236 581 SACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK-DK----DVTSWNAIIGGHGIHGYG 655 (953)
Q Consensus 581 ~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~----~~~~~~~li~~~~~~g~~ 655 (953)
..=.+++.++..+.+++..+..+.. +..+|.-....=...|+.+.|..+|+-.. +| -...|.+.|.--...|.+
T Consensus 445 elElqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ 523 (677)
T KOG1915|consen 445 ELELQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEF 523 (677)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchH
Confidence 4434444444444444444443322 44444444444455566666666665444 22 223555555555556666
Q ss_pred HHHHHHHHHHHH
Q 037236 656 KEAIELFEKMLA 667 (953)
Q Consensus 656 ~~A~~l~~~m~~ 667 (953)
++|..+++++++
T Consensus 524 ekaR~LYerlL~ 535 (677)
T KOG1915|consen 524 EKARALYERLLD 535 (677)
T ss_pred HHHHHHHHHHHH
Confidence 666666666665
No 55
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.23 E-value=9.7e-09 Score=101.43 Aligned_cols=299 Identities=15% Similarity=0.146 Sum_probs=195.0
Q ss_pred cCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccchhhHHHHHHHHhCCCCc---hhhHhhHHHHHHhcCChhHH
Q 037236 450 NGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGD---SFTGISLLSLYMHCEKSSSA 526 (953)
Q Consensus 450 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~---~~~~~~li~~y~~~g~~~~A 526 (953)
+.+.++|.++|-+|.+.. +-+..+-.++-+.+.+.|..+.|..+|..+.++---+. ......|..-|...|-++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 467788888888887631 11223334566667777888888888877765421111 23344566778889999999
Q ss_pred HHHHHhcccCCc---ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcC
Q 037236 527 RVLFDEMEDKSL---VSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAI 603 (953)
Q Consensus 527 ~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~ 603 (953)
+.+|..+.+.+. .+...|+..|-+..+|++|++.-+++.+.+-++..+-.
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eI--------------------------- 179 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEI--------------------------- 179 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHH---------------------------
Confidence 999998876433 35666888899999999999998888877655532211
Q ss_pred CCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 037236 604 LTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKDKD---VTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGI 680 (953)
Q Consensus 604 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~l 680 (953)
...|.-|...+.-..+++.|..++.+..+.| +..--.+...+...|++++|++.++...+.+..--..+...|
T Consensus 180 ----AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L 255 (389)
T COG2956 180 ----AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEML 255 (389)
T ss_pred ----HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 1223344555555677888888888776333 223334556688889999999999999885322234567788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHH-HhCCCCCChhHHHHHHHHHHhcCChh
Q 037236 681 LMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLI-IEMPEEADAGIWSSLLRSCRTYGALK 759 (953)
Q Consensus 681 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~-~~~~~~~~~~~~~~ll~~~~~~g~~~ 759 (953)
..+|.+.|+.+++..++.++.+ ..+....-..|.+......-.++|...+ +....+|+......|+..-...
T Consensus 256 ~~~Y~~lg~~~~~~~fL~~~~~---~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~d---- 328 (389)
T COG2956 256 YECYAQLGKPAEGLNFLRRAME---TNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLAD---- 328 (389)
T ss_pred HHHHHHhCCHHHHHHHHHHHHH---ccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhcc----
Confidence 8899999999999999988876 4455555555655554444455555444 4445567766666555432111
Q ss_pred HHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCccCCcee
Q 037236 760 MGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKERGLQKEAGCS 814 (953)
Q Consensus 760 ~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s 814 (953)
++-|+|.+...+.+.|....++..|.+.
T Consensus 329 ---------------------------aeeg~~k~sL~~lr~mvge~l~~~~~YR 356 (389)
T COG2956 329 ---------------------------AEEGRAKESLDLLRDMVGEQLRRKPRYR 356 (389)
T ss_pred ---------------------------ccccchhhhHHHHHHHHHHHHhhcCCce
Confidence 1235566777777777666666656543
No 56
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.20 E-value=6e-07 Score=96.69 Aligned_cols=523 Identities=14% Similarity=0.129 Sum_probs=303.6
Q ss_pred CCCCChhHHHHHHHHhhccCChHHHHHHhccCCCCCeecHHHHHHHHHcCCCchHHHHHHHHhhhccCCCCCChhhHHHH
Q 037236 195 GLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGSSENGFSCESFDLLIKMMGCEEGFIPDVATVVTV 274 (953)
Q Consensus 195 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~l 274 (953)
+..|+...|-.+-+.+ +.+......| ...|-.-+..+..+|+...-...|++.. +...+......|...
T Consensus 76 ~~~~T~~~~~~vn~c~------er~lv~mHkm----pRIwl~Ylq~l~~Q~~iT~tR~tfdrAL-raLpvtqH~rIW~ly 144 (835)
T KOG2047|consen 76 HLCPTDPAYESVNNCF------ERCLVFMHKM----PRIWLDYLQFLIKQGLITRTRRTFDRAL-RALPVTQHDRIWDLY 144 (835)
T ss_pred ccCCCChHHHHHHHHH------HHHHHHHhcC----CHHHHHHHHHHHhcchHHHHHHHHHHHH-HhCchHhhccchHHH
Confidence 4566666666665544 3344444443 4457667777788888888888888763 344555566677788
Q ss_pred HHhhhcCCCchHHHHHHHHHHHhCCCCCchHHHHHHHhhHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChh-HH
Q 037236 275 LPVCAGEGNVDLGILVHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFDKNNNKNVVSWNTIIGAFSMAGDVC-GT 353 (953)
Q Consensus 275 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~-~A 353 (953)
++.....+-++.+..+++.-++.. +..-+-.|..+++.+++++|.+.+......|... .+.|+.. .-
T Consensus 145 l~Fv~~~~lPets~rvyrRYLk~~----P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~--------sk~gkSn~ql 212 (835)
T KOG2047|consen 145 LKFVESHGLPETSIRVYRRYLKVA----PEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFV--------SKKGKSNHQL 212 (835)
T ss_pred HHHHHhCCChHHHHHHHHHHHhcC----HHHHHHHHHHHHhccchHHHHHHHHHhcCchhhh--------hhcccchhhH
Confidence 888888888888888888777653 3335667777788888888877777766544321 1111110 11
Q ss_pred HHHHHHHHhccCCCCCchhhHHHHHHHhccccchHHHHHHHHHHHHcCCC--Cc--hhHHHHHHHHHHhcCCcccHHHHh
Q 037236 354 FDLLRKMQMKEEEMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLRHGFD--ND--ELVANAFVVAYAKCGSEISAENVF 429 (953)
Q Consensus 354 ~~l~~~m~~~g~~~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~--~~--~~~~~~li~~y~~~g~~~~A~~~f 429 (953)
+..+..+... .|+. -.... .+.+++.|+. +| ...+++|.+.|.+.|.++.|..+|
T Consensus 213 w~elcdlis~----~p~~----------------~~sln-vdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvy 271 (835)
T KOG2047|consen 213 WLELCDLISQ----NPDK----------------VQSLN-VDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVY 271 (835)
T ss_pred HHHHHHHHHh----Ccch----------------hcccC-HHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 1111111111 1111 00000 1112222221 22 346788888888888888888888
Q ss_pred ccCCCC--ChhhHHHHHHHHHhc----------------C------ChHHHHHHHHHhhhCCC-----------CCCcch
Q 037236 430 HGMDSR--TVSSWNALICGYAQN----------------G------DHLKALDYFLQMTHSDL-----------EPDLFS 474 (953)
Q Consensus 430 ~~~~~~--~~~~~~~li~~~~~~----------------g------~~~~A~~~~~~m~~~g~-----------~p~~~t 474 (953)
++.... .+.-|+.+.+.|++- | +.+-.+.-|+.+.+.+. +.+..+
T Consensus 272 eeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~e 351 (835)
T KOG2047|consen 272 EEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEE 351 (835)
T ss_pred HHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHH
Confidence 764332 222233333333321 1 12223344444443321 011111
Q ss_pred HHHHHHhhccccccchhhHHHHHHHHh-CC----CCchhhHhhHHHHHHhcCChhHHHHHHHhcccCCcc-------cHH
Q 037236 475 IGSLILACTHLKSLHRGKEIHGFVIRN-GL----EGDSFTGISLLSLYMHCEKSSSARVLFDEMEDKSLV-------SWN 542 (953)
Q Consensus 475 ~~~ll~~~~~~~~~~~a~~i~~~~~~~-g~----~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~-------~~~ 542 (953)
+..-. -...|+..+....+.++++. .+ ..-...+..+.+.|-..|+++.|+.+|++..+-+-. .|-
T Consensus 352 W~kRV--~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~ 429 (835)
T KOG2047|consen 352 WHKRV--KLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWC 429 (835)
T ss_pred HHhhh--hhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHH
Confidence 11111 11234455556666666643 11 112346778889999999999999999998764332 455
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCC----------C-------ChhhHHHHHHHhccccchHHHHHHHHHHHHcCCC
Q 037236 543 TMIAGYSQNKLPVEAIVLFRRMFSIGVQ----------P-------CEISIVSILSACSQLSALRLGKETHCYALKAILT 605 (953)
Q Consensus 543 ~li~~~~~~g~~~~A~~~~~~m~~~g~~----------p-------~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~ 605 (953)
.-...-.++.+++.|+++.++....--. | +...|+..++--...|-++..+.+++.+++..+.
T Consensus 430 ~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria 509 (835)
T KOG2047|consen 430 AWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA 509 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC
Confidence 5555566778889999988776532111 1 1122333444444567888889999999887664
Q ss_pred CCccHHHHHHHHHHhcCCHHHHHHHhhhcC----CCCHH-HHHHHHHHHHh-c--CChHHHHHHHHHHHHCCCCCCHHHH
Q 037236 606 NDAFVACSIIDMYAKCGCLEQSRRVFDRLK----DKDVT-SWNAIIGGHGI-H--GYGKEAIELFEKMLALGHKPDTFTF 677 (953)
Q Consensus 606 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~-~~~~li~~~~~-~--g~~~~A~~l~~~m~~~g~~P~~~t~ 677 (953)
++.+.-...-.+....-++++.+++++-. -|++. .||+.+.-+.+ . -..+.|..+|++.++ |+.|...-+
T Consensus 510 -TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKt 587 (835)
T KOG2047|consen 510 -TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKT 587 (835)
T ss_pred -CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHH
Confidence 33333333444556677899999999765 35553 78887766554 2 368999999999999 677854333
Q ss_pred HHHH--HHHHhcCCHHHHHHHHHHHHH--------------------hcCCCCChhHHHH----------------HHHH
Q 037236 678 VGIL--MACNHAGLVENGLKYFSQMQK--------------------LHAVKPKLEHYAC----------------VVDM 719 (953)
Q Consensus 678 ~~ll--~a~~~~g~~~~a~~~~~~m~~--------------------~~~~~p~~~~~~~----------------lv~~ 719 (953)
.-|+ ..=..-|....|+.+++++.. .+|+.-+...|-- ..++
T Consensus 588 iyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdl 667 (835)
T KOG2047|consen 588 IYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADL 667 (835)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 3333 222345777777777776532 1344333333321 2344
Q ss_pred HhhcCCHHHHHHHHHhCCC--CC--ChhHHHHHHHHHHhcCChhHHHHHH
Q 037236 720 LGRAGKLDDAFKLIIEMPE--EA--DAGIWSSLLRSCRTYGALKMGEKVA 765 (953)
Q Consensus 720 l~~~g~~~eA~~~~~~~~~--~~--~~~~~~~ll~~~~~~g~~~~a~~~~ 765 (953)
=.+.|..+.|..++.-... .| +...|.+.=.--.+|||-+.-..++
T Consensus 668 EtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keML 717 (835)
T KOG2047|consen 668 ETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEML 717 (835)
T ss_pred hhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHHH
Confidence 4567888889888865543 33 5678888888888999955544444
No 57
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=1.8e-06 Score=97.26 Aligned_cols=626 Identities=12% Similarity=0.066 Sum_probs=332.4
Q ss_pred hhHHHHHHHhcCChhhHHHHhhcCCC--CCch-----hHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcccHHHHHH
Q 037236 101 NTRLITMYSLCGFPLDSRRVFDSLKT--RNLF-----QWNALVSGFTKNELYPDVLSIFVELLSDTELKPDNFTFPCVIK 173 (953)
Q Consensus 101 ~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~-----~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~ll~ 173 (953)
+..+.+.|.+.|-+..|.+.|..+.. +.++ .-..+ ..|...-.++++++.++.|.. .+++.+.++...+..
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwL-v~yFg~lsve~s~eclkaml~-~NirqNlQi~VQvat 686 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWL-VNYFGSLSVEDSLECLKAMLS-ANIRQNLQIVVQVAT 686 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHH-HHHHHhcCHHHHHHHHHHHHH-HHHHhhhHHHHHHHH
Confidence 34566777788888888877776642 1111 11112 234445567778888888887 677777666555555
Q ss_pred HhhcCCChhhHhHHHHHHHHh-----------CCCCChhHHHHHHHHhhccCChHHHHHHhccCCC--------------
Q 037236 174 ACGGIADVSFGSGVHGMAAKM-----------GLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPE-------------- 228 (953)
Q Consensus 174 ~~~~~~~~~~a~~~~~~~~~~-----------g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-------------- 228 (953)
-+...=..+.-.++|+..... ++.-|+.+.-..|.+-++.|.+.+..++.++-..
T Consensus 687 ky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAk 766 (1666)
T KOG0985|consen 687 KYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAK 766 (1666)
T ss_pred HHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhcc
Confidence 444433333344444433221 3556777777888999999999888887655321
Q ss_pred -----C-----CeecHHHHHHHHHcCCCchHHHHHHHHhhhccCCCCCC-----------hh-------------hHHHH
Q 037236 229 -----R-----NLVSWNSIICGSSENGFSCESFDLLIKMMGCEEGFIPD-----------VA-------------TVVTV 274 (953)
Q Consensus 229 -----~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~-----------~~-------------t~~~l 274 (953)
| |...+--=+-.|.-.++..+-+++|-+- ...+-.|- .. .-..+
T Consensus 767 L~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQk--vNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deL 844 (1666)
T KOG0985|consen 767 LTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQK--VNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDEL 844 (1666)
T ss_pred ccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhh--cCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHH
Confidence 1 1111100111222223333333333332 11111110 00 01112
Q ss_pred HHhhhcCCCchHHHHHHHHHHHhCCCCCchHHHHHHHhhHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChhHHH
Q 037236 275 LPVCAGEGNVDLGILVHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFDKNNNKNVVSWNTIIGAFSMAGDVCGTF 354 (953)
Q Consensus 275 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~ 354 (953)
..-+-+.+++..-...++..+..| ..|+.++|+|...|....+-.+ +.+.+ |..-=+..+.-||...++.-|.
T Consensus 845 v~EvEkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE--~fLke----N~yYDs~vVGkYCEKRDP~lA~ 917 (1666)
T KOG0985|consen 845 VEEVEKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPE--RFLKE----NPYYDSKVVGKYCEKRDPHLAC 917 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChH--Hhccc----CCcchhhHHhhhhcccCCceEE
Confidence 233344455555566667777777 5678889999888877654321 12211 1111122233344444333322
Q ss_pred HHHHHHHhccC--C----------------CCCchhhHHHHHHHhccccchHHHHHHHHHHHHcCCC--CchhHHHHHHH
Q 037236 355 DLLRKMQMKEE--E----------------MKPNEVTVLNVLTSCSEKSELLSLKELHGYSLRHGFD--NDELVANAFVV 414 (953)
Q Consensus 355 ~l~~~m~~~g~--~----------------~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~--~~~~~~~~li~ 414 (953)
-.|++=+...+ . -+.|...|..++. .+-..-+++.+.++..+++ .|+.-.+.-+.
T Consensus 918 vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~-----e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVk 992 (1666)
T KOG0985|consen 918 VAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLN-----EENPYRRQLIDQVVQTALPETQDPEEVSVTVK 992 (1666)
T ss_pred EeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHh-----ccChHHHHHHHHHHHhcCCccCChHHHHHHHH
Confidence 22211000000 0 0112222222221 0111123444444444432 23334444444
Q ss_pred HHHhcCCcccHHHHhccCC-CCCh-----hhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhcccccc
Q 037236 415 AYAKCGSEISAENVFHGMD-SRTV-----SSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSL 488 (953)
Q Consensus 415 ~y~~~g~~~~A~~~f~~~~-~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 488 (953)
++...+-..+-.++++++. ++++ ..-|.||-...+. +..+..+..+++-.-. .| .+...+...+-+
T Consensus 993 AfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyD-a~------~ia~iai~~~Ly 1064 (1666)
T KOG0985|consen 993 AFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-AP------DIAEIAIENQLY 1064 (1666)
T ss_pred HHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCC-ch------hHHHHHhhhhHH
Confidence 4555554445455444432 1111 1122222222222 2233333333332211 01 111222233334
Q ss_pred chhhHHHHHHHHhCCCCchhhHhhHHHHHHhcCChhHHHHHHHhcccCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 037236 489 HRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMEDKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIG 568 (953)
Q Consensus 489 ~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 568 (953)
++|..+|+.. ..+....+.|++ ..++++.|.+.-++..+ +..|+.+..+-.+.|...+|++-|-+.
T Consensus 1065 EEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyika---- 1130 (1666)
T KOG0985|consen 1065 EEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKA---- 1130 (1666)
T ss_pred HHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhc----
Confidence 4444444332 222222233332 23455556555555544 356999999999999999998877543
Q ss_pred CCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHH
Q 037236 569 VQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGG 648 (953)
Q Consensus 569 ~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 648 (953)
-|+..|..++.++++.|.+++-..++.++.+..-+|. +-+.|+-+|++.+++.+-++... -||..-...+..-
T Consensus 1131 --dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eLi~AyAkt~rl~elE~fi~---gpN~A~i~~vGdr 1203 (1666)
T KOG0985|consen 1131 --DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSELIFAYAKTNRLTELEEFIA---GPNVANIQQVGDR 1203 (1666)
T ss_pred --CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHHHHHHHHhchHHHHHHHhc---CCCchhHHHHhHH
Confidence 3567788999999999999998888888888766544 44678888888888887766543 4566666667777
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHH
Q 037236 649 HGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDD 728 (953)
Q Consensus 649 ~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~e 728 (953)
|...|.++.|.-+|. +...|..|...+.+.|.+..|...-+.+ -+..+|.-+-.++...+.+.-
T Consensus 1204 cf~~~~y~aAkl~y~---------~vSN~a~La~TLV~LgeyQ~AVD~aRKA-------ns~ktWK~VcfaCvd~~EFrl 1267 (1666)
T KOG0985|consen 1204 CFEEKMYEAAKLLYS---------NVSNFAKLASTLVYLGEYQGAVDAARKA-------NSTKTWKEVCFACVDKEEFRL 1267 (1666)
T ss_pred HhhhhhhHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHHHHhhhc-------cchhHHHHHHHHHhchhhhhH
Confidence 777777777766664 3345677777777777777776654333 234556656566665555443
Q ss_pred HHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 037236 729 AFKLIIEMPEEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGS 789 (953)
Q Consensus 729 A~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 789 (953)
|.-.= +..--.+.-..-|+..|...|-+++-...++..+.++--+-+.+.-|+-+|++-
T Consensus 1268 AQiCG--L~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1268 AQICG--LNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred HHhcC--ceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc
Confidence 32110 000112233556778888888888888888888888888888888888888764
No 58
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.18 E-value=3.5e-09 Score=112.13 Aligned_cols=213 Identities=15% Similarity=0.081 Sum_probs=155.4
Q ss_pred cchHHHHHHHHHHHHcC-CCC--CccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHH
Q 037236 587 SALRLGKETHCYALKAI-LTN--DAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIE 660 (953)
Q Consensus 587 ~~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 660 (953)
+..+.+..-+..++... ..| ....+..+...|.+.|+.++|...|++.. +.+...|+.+...|...|++++|++
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34455555555565432 222 24567888889999999999999999876 4577899999999999999999999
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCC
Q 037236 661 LFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPEE 739 (953)
Q Consensus 661 l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~ 739 (953)
.|++.++ +.| +..++..+..++...|++++|.+.|+...+ ..|+..........+...++.++|.+.+++....
T Consensus 120 ~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 9999998 678 567788899999999999999999999876 4565332222233455678999999999664332
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHHHHh-------ccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCC
Q 037236 740 ADAGIWSSLLRSCRTYGALKMGEKVAKTLL-------ELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKERG 806 (953)
Q Consensus 740 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 806 (953)
.++..|.. .......|+...+ ..++.+. ++.|+.+.+|..|+.+|...|++++|...+++..+..
T Consensus 195 ~~~~~~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 LDKEQWGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CCccccHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 22223432 2223345665444 2444443 5567788899999999999999999999988776643
No 59
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=8.7e-08 Score=97.65 Aligned_cols=367 Identities=10% Similarity=0.009 Sum_probs=246.3
Q ss_pred chhHHHHHHHHHHhcCCcccHHHHhccCCCC-ChhhHHHHHHHHHhcCC--hHH-------------HHHHHHHhhh---
Q 037236 405 DELVANAFVVAYAKCGSEISAENVFHGMDSR-TVSSWNALICGYAQNGD--HLK-------------ALDYFLQMTH--- 465 (953)
Q Consensus 405 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~~g~--~~~-------------A~~~~~~m~~--- 465 (953)
+...-...+..|...++-+.|.....+.+.. ....-|.|+.-+.+.|. .++ |++.+.-..+
T Consensus 96 ~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v 175 (564)
T KOG1174|consen 96 DAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGV 175 (564)
T ss_pred cHHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhh
Confidence 3344445566677777777777777776654 23333334333333321 111 1121111111
Q ss_pred ------------CCCCCCcchHHHHHHhhccc--cccchhhHHHHHHHH-hCCCCchhhHhhHHHHHHhcCChhHHHHHH
Q 037236 466 ------------SDLEPDLFSIGSLILACTHL--KSLHRGKEIHGFVIR-NGLEGDSFTGISLLSLYMHCEKSSSARVLF 530 (953)
Q Consensus 466 ------------~g~~p~~~t~~~ll~~~~~~--~~~~~a~~i~~~~~~-~g~~~~~~~~~~li~~y~~~g~~~~A~~~f 530 (953)
..+.|+..+...-+.+++.. ++-..+.+.+-.+.. .-+..++....++.+.|...|+..+|...|
T Consensus 176 ~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~F 255 (564)
T KOG1174|consen 176 NGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIF 255 (564)
T ss_pred cchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHH
Confidence 12344444445555554433 333444444444443 456678888999999999999999999999
Q ss_pred HhcccCCcccHHHH---HHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCC
Q 037236 531 DEMEDKSLVSWNTM---IAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTND 607 (953)
Q Consensus 531 ~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~ 607 (953)
++...-|+.+..+| .-.+.+.|+++....+...+.... +-....|..-+...-...+.+.|..+-+..++.... +
T Consensus 256 e~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~ 333 (564)
T KOG1174|consen 256 SSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-N 333 (564)
T ss_pred HHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-c
Confidence 98876665554443 223567888888888888776532 112222222223333456677777776666654322 3
Q ss_pred ccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHH-H
Q 037236 608 AFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGIL-M 682 (953)
Q Consensus 608 ~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll-~ 682 (953)
...+-.-...+...|+.++|.-.|.... +-+..+|..++.+|...|++.+|.-+-+..... -| +..++..+. .
T Consensus 334 ~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~sA~~LtL~g~~ 411 (564)
T KOG1174|consen 334 HEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--FQNSARSLTLFGTL 411 (564)
T ss_pred chHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hhcchhhhhhhcce
Confidence 3444444567778899999999999765 458899999999999999999999998887663 34 555555442 3
Q ss_pred HHH-hcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCChhHHHHHHHHHHhcCChh
Q 037236 683 ACN-HAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE-EADAGIWSSLLRSCRTYGALK 759 (953)
Q Consensus 683 a~~-~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~ 759 (953)
.|. ...--++|.+++++..+ +.|+ ......+..++.+.|+.+++..++++... .||....+.|....+..+.+.
T Consensus 412 V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q 488 (564)
T KOG1174|consen 412 VLFPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQ 488 (564)
T ss_pred eeccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHH
Confidence 333 23335789999887754 8898 77778889999999999999999998765 799999999999999999999
Q ss_pred HHHHHHHHHhccCCCCcch
Q 037236 760 MGEKVAKTLLELEPDKAEN 778 (953)
Q Consensus 760 ~a~~~~~~~~~l~p~~~~~ 778 (953)
.+...+..++.++|+|..+
T Consensus 489 ~am~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 489 KAMEYYYKALRQDPKSKRT 507 (564)
T ss_pred HHHHHHHHHHhcCccchHH
Confidence 9999999999999987754
No 60
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.15 E-value=4.5e-08 Score=101.97 Aligned_cols=80 Identities=14% Similarity=-0.022 Sum_probs=40.2
Q ss_pred HHHHHcCCCchHHHHHHHHhhhccCCCCCC-hhhHHHHHHhhhcCCCchHHHHHHHHHHHhCCCCC-chHHHHHHHhhHh
Q 037236 238 ICGSSENGFSCESFDLLIKMMGCEEGFIPD-VATVVTVLPVCAGEGNVDLGILVHGLAVKLGLTRE-LMVNNALVDMYAK 315 (953)
Q Consensus 238 i~~~~~~g~~~~A~~l~~~m~~~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~ 315 (953)
.+-|.++|++++|++.|.+. -...|| +.-|...--++...|+++.+.+--...++. .|+ +-.+..-..++-.
T Consensus 122 GN~~f~~kkY~eAIkyY~~A----I~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 122 GNKFFRNKKYDEAIKYYTQA----IELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQ 195 (606)
T ss_pred hhhhhhcccHHHHHHHHHHH----HhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHh
Confidence 33455666666666666665 123445 444445555555666666555444433332 232 2233334445555
Q ss_pred cCChhHHH
Q 037236 316 CGFLSEAQ 323 (953)
Q Consensus 316 ~g~~~~A~ 323 (953)
.|++++|+
T Consensus 196 lg~~~eal 203 (606)
T KOG0547|consen 196 LGKFDEAL 203 (606)
T ss_pred hccHHHHH
Confidence 66666653
No 61
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.15 E-value=8e-08 Score=95.77 Aligned_cols=311 Identities=12% Similarity=0.089 Sum_probs=167.4
Q ss_pred CcccHHHHhccCCCC--ChhhHHH-HHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhcc--ccccchhhHHH
Q 037236 421 SEISAENVFHGMDSR--TVSSWNA-LICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTH--LKSLHRGKEIH 495 (953)
Q Consensus 421 ~~~~A~~~f~~~~~~--~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~~~~~~a~~i~ 495 (953)
.+.+|.+++.++... +....|. |.-+|.+..-++-+.++++--+.. -||+ |+..=+.+|.. .=.-..++.-.
T Consensus 166 HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdS-tiA~NLkacn~fRl~ngr~ae~E~ 242 (557)
T KOG3785|consen 166 HYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDS-TIAKNLKACNLFRLINGRTAEDEK 242 (557)
T ss_pred HHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCc-HHHHHHHHHHHhhhhccchhHHHH
Confidence 455666666665432 2333333 334566667677666666665543 2332 23333333322 21222222222
Q ss_pred HHHHHhCCCCchhhHhhHHHHHHh-----cCChhHHHHHHHhcccCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 037236 496 GFVIRNGLEGDSFTGISLLSLYMH-----CEKSSSARVLFDEMEDKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQ 570 (953)
Q Consensus 496 ~~~~~~g~~~~~~~~~~li~~y~~-----~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 570 (953)
+.+.+.+-..-+ .+.-.++ ..+-+.|++++-.+.+-=+.+--.|+--|.+.++..+|..+.+++.- ..
T Consensus 243 k~ladN~~~~~~-----f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--tt 315 (557)
T KOG3785|consen 243 KELADNIDQEYP-----FIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TT 315 (557)
T ss_pred HHHHhcccccch-----hHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CC
Confidence 222222211111 1111222 12345666666554432223334455568888999999888776632 23
Q ss_pred CChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCC-----CCHHHHHHH
Q 037236 571 PCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKD-----KDVTSWNAI 645 (953)
Q Consensus 571 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~l 645 (953)
|-......+..+ ++..-.+....+.-|.+.|.-+-. .++..-.+|
T Consensus 316 P~EyilKgvv~a------------------------------alGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsm 365 (557)
T KOG3785|consen 316 PYEYILKGVVFA------------------------------ALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSM 365 (557)
T ss_pred hHHHHHHHHHHH------------------------------HhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHH
Confidence 322222222221 111111122223344444443321 122233455
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHH-HHHHHHHhhcC
Q 037236 646 IGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHY-ACVVDMLGRAG 724 (953)
Q Consensus 646 i~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-~~lv~~l~~~g 724 (953)
.+.+.-..++++.+-.++.+..- +..|...-..+..|.+..|.+.+|.++|-++. ...++ +...| ..|...|.+.|
T Consensus 366 As~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is-~~~ik-n~~~Y~s~LArCyi~nk 442 (557)
T KOG3785|consen 366 ASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRIS-GPEIK-NKILYKSMLARCYIRNK 442 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhc-Chhhh-hhHHHHHHHHHHHHhcC
Confidence 55555666777777777776664 23344444467888888999999999887762 22222 23344 44577889999
Q ss_pred CHHHHHHHHHhCCCCCChhH-HHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 037236 725 KLDDAFKLIIEMPEEADAGI-WSSLLRSCRTYGALKMGEKVAKTLLELEPD 774 (953)
Q Consensus 725 ~~~eA~~~~~~~~~~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~ 774 (953)
+.+-|.+++-++..+.+..+ ...+.+.|.+.+.+=-|-++++.+-.++|.
T Consensus 443 kP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 443 KPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred CchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 99999999888765544444 444555799999999999999988888884
No 62
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.14 E-value=4.6e-07 Score=100.07 Aligned_cols=432 Identities=13% Similarity=0.069 Sum_probs=220.6
Q ss_pred HhCCCCCchHHHHHHHhhHhcCChhHHHHHHhcCCC---CCcccHHHHHHHHHcCCChhHHHHHHHHHHhccCCCCCchh
Q 037236 296 KLGLTRELMVNNALVDMYAKCGFLSEAQILFDKNNN---KNVVSWNTIIGAFSMAGDVCGTFDLLRKMQMKEEEMKPNEV 372 (953)
Q Consensus 296 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~p~~~ 372 (953)
...+..|..+|..|.-+...+|+++.+-+.|++... .....|+.+-..|...|....|+.+++.-.... -.|+..
T Consensus 316 ~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~--~~ps~~ 393 (799)
T KOG4162|consen 316 LKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKS--EQPSDI 393 (799)
T ss_pred HhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccc--cCCCcc
Confidence 334668999999999999999999999999997543 345679999999999999999999999876543 234433
Q ss_pred h-HHHHHHHhc-cccchHHHHHHHHHHHHcC--CC--CchhHHHHHHHHHHhcCCcccHHHHhccCCCCChhhHHHHHHH
Q 037236 373 T-VLNVLTSCS-EKSELLSLKELHGYSLRHG--FD--NDELVANAFVVAYAKCGSEISAENVFHGMDSRTVSSWNALICG 446 (953)
Q Consensus 373 t-~~~ll~~~~-~~~~~~~a~~i~~~~~~~g--~~--~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~ 446 (953)
+ +-..-+.|. +.+.++++...-..++... .. ..+..+-.+.-+|...-. ...++.
T Consensus 394 s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~--------------~a~~~s----- 454 (799)
T KOG4162|consen 394 SVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQAR--------------QANLKS----- 454 (799)
T ss_pred hHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhh--------------cCCChH-----
Confidence 3 333334444 3355555555444444311 00 011112222212211100 000000
Q ss_pred HHhcCChHHHHHHHHHhhhCC-CCCCcchHHHHHHhhccccccchhhHHHHHHHHhCCCCchhhHhhHHHHHHhcCChhH
Q 037236 447 YAQNGDHLKALDYFLQMTHSD-LEPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSS 525 (953)
Q Consensus 447 ~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 525 (953)
.+.....++++.+++..+.+ -.|+..-|.++- ++..++++.|.+...+..+.+-..+...+..|.-.+...+++.+
T Consensus 455 -eR~~~h~kslqale~av~~d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~ 531 (799)
T KOG4162|consen 455 -ERDALHKKSLQALEEAVQFDPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKE 531 (799)
T ss_pred -HHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHH
Confidence 01112345667777766543 234333333332 44556677777777777777666677777777777777777777
Q ss_pred HHHHHHhcccC---CcccHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCChhhHHHHHHHhccccchHHHHHHHHHHH
Q 037236 526 ARVLFDEMEDK---SLVSWNTMIAGYSQNKLPVEAIVLFRRMFSI--GVQPCEISIVSILSACSQLSALRLGKETHCYAL 600 (953)
Q Consensus 526 A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 600 (953)
|+.+.+..... |.+.--.-+..-..-++.++|+.....+... ...|=..
T Consensus 532 Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~-------------------------- 585 (799)
T KOG4162|consen 532 ALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQ-------------------------- 585 (799)
T ss_pred HHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhh--------------------------
Confidence 77776654431 1111111112222245555655555554431 0000000
Q ss_pred HcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC-----CCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--
Q 037236 601 KAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK-----DKDV-TSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-- 672 (953)
Q Consensus 601 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-- 672 (953)
.|+-....+.+..+. ..|. .++..+.. ... -+.+.+..-.. |...-+.|
T Consensus 586 --------------------~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~-l~a-~~~~~~~se~~-Lp~s~~~~~~ 642 (799)
T KOG4162|consen 586 --------------------TLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS-LVA-SQLKSAGSELK-LPSSTVLPGP 642 (799)
T ss_pred --------------------hhhhhhhhhhhcccccCcccccccchhhHHHHH-HHH-hhhhhcccccc-cCcccccCCC
Confidence 000111111111111 0011 11111111 111 00000000000 11111111
Q ss_pred C------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCC-hh
Q 037236 673 D------TFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE-EAD-AG 743 (953)
Q Consensus 673 ~------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~~-~~ 743 (953)
+ ...|......+...+..++|...+.+..+ +.|. ...|.-....+...|.++||.+.|..... .|+ +.
T Consensus 643 ~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~---~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~ 719 (799)
T KOG4162|consen 643 DSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK---IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVP 719 (799)
T ss_pred CchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh---cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcH
Confidence 1 12233444455566666666655554432 3343 44455555566666666666666554432 343 44
Q ss_pred HHHHHHHHHHhcCChhHHHH--HHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 037236 744 IWSSLLRSCRTYGALKMGEK--VAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMK 803 (953)
Q Consensus 744 ~~~~ll~~~~~~g~~~~a~~--~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 803 (953)
+..++...+...|+...++. ++..+++++|.++.++..|+.++.+.|+.++|..-+...-
T Consensus 720 s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 720 SMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 56666666666666666666 7777777777777777777777777777777777665553
No 63
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.14 E-value=2e-06 Score=93.57 Aligned_cols=530 Identities=15% Similarity=0.078 Sum_probs=278.4
Q ss_pred hcCChhhHHHHhhcCC-CCCch-hHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcccHHHHHHHhhcCCChhhHhHH
Q 037236 110 LCGFPLDSRRVFDSLK-TRNLF-QWNALVSGFTKNELYPDVLSIFVELLSDTELKPDNFTFPCVIKACGGIADVSFGSGV 187 (953)
Q Consensus 110 ~~g~~~~A~~~f~~~~-~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 187 (953)
.-|+++.|..+++... .|+.. .|-.+...-...|+.--|...|. ..|++..++.+
T Consensus 456 d~~df~ra~afles~~~~~da~amw~~laelale~~nl~iaercfa-----------------------ai~dvak~r~l 512 (1636)
T KOG3616|consen 456 DDGDFDRATAFLESLEMGPDAEAMWIRLAELALEAGNLFIAERCFA-----------------------AIGDVAKARFL 512 (1636)
T ss_pred ccCchHHHHHHHHhhccCccHHHHHHHHHHHHHHhccchHHHHHHH-----------------------HHHHHHHHHHH
Confidence 3466777777776654 24433 46555555555555544444443 33445555555
Q ss_pred HHHHHH-------hCCC-CChhHHHHHHHHhhccCChHHHHHHhccCCCCCeecHHHHHHHHHcCCCchHHHHHHHHhhh
Q 037236 188 HGMAAK-------MGLI-GDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGSSENGFSCESFDLLIKMMG 259 (953)
Q Consensus 188 ~~~~~~-------~g~~-~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 259 (953)
|+...- -|-+ .+-+-..+++.++. .++.+|..+|-+-. + -...|..|....++++|+.+-+..
T Consensus 513 hd~~eiadeas~~~ggdgt~fykvra~lail~--kkfk~ae~ifleqn--~---te~aigmy~~lhkwde~i~lae~~-- 583 (1636)
T KOG3616|consen 513 HDILEIADEASIEIGGDGTDFYKVRAMLAILE--KKFKEAEMIFLEQN--A---TEEAIGMYQELHKWDEAIALAEAK-- 583 (1636)
T ss_pred HHHHHHHHHHhHhhCCCCchHHHHHHHHHHHH--hhhhHHHHHHHhcc--c---HHHHHHHHHHHHhHHHHHHHHHhc--
Confidence 543321 1222 22222333443333 35677777763321 1 122344555556666666665443
Q ss_pred ccCCCCCChhhHHHHHHhhhcCCCchHHHHHHHHHHHhCCCCCchHHHHHHHhhHhcCChhHHHHHHhc--CCCCCcccH
Q 037236 260 CEEGFIPDVATVVTVLPVCAGEGNVDLGILVHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFDK--NNNKNVVSW 337 (953)
Q Consensus 260 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~--~~~~d~~~~ 337 (953)
|.+.-...-.+-++++...|+-+.|-++ ..+..-.-+-|..|.|.|.+..|.+.... ....|....
T Consensus 584 ---~~p~~eklk~sy~q~l~dt~qd~ka~el---------k~sdgd~laaiqlyika~~p~~a~~~a~n~~~l~~de~il 651 (1636)
T KOG3616|consen 584 ---GHPALEKLKRSYLQALMDTGQDEKAAEL---------KESDGDGLAAIQLYIKAGKPAKAARAALNDEELLADEEIL 651 (1636)
T ss_pred ---CChHHHHHHHHHHHHHHhcCchhhhhhh---------ccccCccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHH
Confidence 2221111222334444444444433322 11112223456777777777666555422 112344444
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHhccCCCCCchhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 037236 338 NTIIGAFSMAGDVCGTFDLLRKMQMKEEEMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLRHGFDNDELVANAFVVAYA 417 (953)
Q Consensus 338 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~ 417 (953)
..+..++.+..-+++|-++|+++.. |+. .+. .|-
T Consensus 652 ~~ia~alik~elydkagdlfeki~d------~dk-----ale-----------------------------------~fk 685 (1636)
T KOG3616|consen 652 EHIAAALIKGELYDKAGDLFEKIHD------FDK-----ALE-----------------------------------CFK 685 (1636)
T ss_pred HHHHHHHHhhHHHHhhhhHHHHhhC------HHH-----HHH-----------------------------------HHH
Confidence 4455555555556666666655521 111 111 111
Q ss_pred hcCCcccHHHHhccCCCCChh-hHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccchhhHHHH
Q 037236 418 KCGSEISAENVFHGMDSRTVS-SWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHG 496 (953)
Q Consensus 418 ~~g~~~~A~~~f~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~ 496 (953)
+-.-+.+|.++-+-.-...++ .-......+.+.|+++.|+..|-+... ....+.+......+.+|..+++
T Consensus 686 kgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ild 756 (1636)
T KOG3616|consen 686 KGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILD 756 (1636)
T ss_pred cccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHH
Confidence 111111222211111000111 112223344555666666655544321 1122333344455555655555
Q ss_pred HHHHhCCCCchhhHhhHHHHHHhcCChhHHHHHHHhcccCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhH
Q 037236 497 FVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMEDKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISI 576 (953)
Q Consensus 497 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 576 (953)
.+...... ..-|.-+.+-|+..|+++.|.++|-+.. .++--|..|.++|+|+.|.++-.+.. .|.
T Consensus 757 niqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~~----~~e---- 821 (1636)
T KOG3616|consen 757 NIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEECH----GPE---- 821 (1636)
T ss_pred Hhhhhccc--cccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHhc----Cch----
Confidence 55443322 2234455666777777777777775542 34455677777777777776654442 221
Q ss_pred HHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCChH
Q 037236 577 VSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGK 656 (953)
Q Consensus 577 ~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 656 (953)
.....|-+-..-+-+.|++.+|.++|-.+..|+.. |..|-++|..+
T Consensus 822 -----------------------------~t~~~yiakaedldehgkf~eaeqlyiti~~p~~a-----iqmydk~~~~d 867 (1636)
T KOG3616|consen 822 -----------------------------ATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKA-----IQMYDKHGLDD 867 (1636)
T ss_pred -----------------------------hHHHHHHHhHHhHHhhcchhhhhheeEEccCchHH-----HHHHHhhCcch
Confidence 12333444445556678888898888888887753 66788889888
Q ss_pred HHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHH
Q 037236 657 EAIELFEKMLALGHKPD--TFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLII 734 (953)
Q Consensus 657 ~A~~l~~~m~~~g~~P~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~ 734 (953)
+.+++.++- .|+ ..|...+..-+...|++.+|...|-+.. -|.+-+++|-..+.+++|.++-+
T Consensus 868 dmirlv~k~-----h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 868 DMIRLVEKH-----HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred HHHHHHHHh-----ChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHh
Confidence 888887663 443 4577778888888999999888776552 26667888888899999988876
Q ss_pred hCCC----CCChhHHHHH------HHHHHhcCChhHHHHH------HHHHhcc-----CCCCcchHHHHHHHHHhcCCch
Q 037236 735 EMPE----EADAGIWSSL------LRSCRTYGALKMGEKV------AKTLLEL-----EPDKAENYVLVSNIYAGSEKWD 793 (953)
Q Consensus 735 ~~~~----~~~~~~~~~l------l~~~~~~g~~~~a~~~------~~~~~~l-----~p~~~~~~~~l~~~y~~~g~~~ 793 (953)
.-.. +.-...|.-- +....+||-++.|... ++-++++ ...-+..++.++-.+-..|+++
T Consensus 933 tegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~e 1012 (1636)
T KOG3616|consen 933 TEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFE 1012 (1636)
T ss_pred ccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchh
Confidence 5321 1112344322 2223456655555432 2222222 3445677888888999999999
Q ss_pred HHHHHHHHH
Q 037236 794 DVRMMRQRM 802 (953)
Q Consensus 794 ~a~~~~~~m 802 (953)
+|.+-+-..
T Consensus 1013 daskhyvea 1021 (1636)
T KOG3616|consen 1013 DASKHYVEA 1021 (1636)
T ss_pred hhhHhhHHH
Confidence 998754433
No 64
>PRK12370 invasion protein regulator; Provisional
Probab=99.13 E-value=7.3e-09 Score=120.06 Aligned_cols=211 Identities=13% Similarity=0.009 Sum_probs=159.8
Q ss_pred cchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 037236 587 SALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFE 663 (953)
Q Consensus 587 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~ 663 (953)
++.++|...++.+.+.... +...+..+..++...|++++|...|++.. +.+...|..+...+...|++++|+..++
T Consensus 318 ~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~ 396 (553)
T PRK12370 318 NAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTIN 396 (553)
T ss_pred hHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3456666667666665433 66778888889999999999999999876 3456788889999999999999999999
Q ss_pred HHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CC
Q 037236 664 KMLALGHKPDT-FTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE-EA 740 (953)
Q Consensus 664 ~m~~~g~~P~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~ 740 (953)
+.++ ..|+. ..+..++.++...|++++|...++++.+. ..|+ +..+..+..+|...|++++|.+.++++.. .|
T Consensus 397 ~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~ 472 (553)
T PRK12370 397 ECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI 472 (553)
T ss_pred HHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc
Confidence 9999 57753 33444555677789999999999988653 2354 55677888899999999999999988654 44
Q ss_pred C-hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHC
Q 037236 741 D-AGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKER 805 (953)
Q Consensus 741 ~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 805 (953)
+ ...++.+...+...| +.+...++.+++..-..+.....+..+|+-.|+-+.+..+ +++.+.
T Consensus 473 ~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 473 TGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred hhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 4 445566666667777 4788888888776544444445589999999999999888 656553
No 65
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.13 E-value=2.6e-05 Score=85.10 Aligned_cols=188 Identities=12% Similarity=0.052 Sum_probs=102.1
Q ss_pred ccCChHHHHHHhccCCCCCeec--HHHHHHHHHcCCCchHHHHHHHHhhhccCCCCCChhhHHHHHHhhhcCCCchHHHH
Q 037236 212 KCAFVEEMVKLFEVMPERNLVS--WNSIICGSSENGFSCESFDLLIKMMGCEEGFIPDVATVVTVLPVCAGEGNVDLGIL 289 (953)
Q Consensus 212 ~~g~~~~A~~~f~~m~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 289 (953)
+...+..|..+++.+..+++.+ |..+..-|+..|+++.|.++|.+. ..+.-.|..+.+.|.++.|..
T Consensus 744 ~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~-----------~~~~dai~my~k~~kw~da~k 812 (1636)
T KOG3616|consen 744 GAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA-----------DLFKDAIDMYGKAGKWEDAFK 812 (1636)
T ss_pred hhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc-----------chhHHHHHHHhccccHHHHHH
Confidence 3444555555555554433322 334444555555555555555443 112334444555555554444
Q ss_pred HHHHHHHhCCCCCchHHHHHHHhhHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHhccCCCCC
Q 037236 290 VHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFDKNNNKNVVSWNTIIGAFSMAGDVCGTFDLLRKMQMKEEEMKP 369 (953)
Q Consensus 290 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~p 369 (953)
+-... .|.+.....|-+-..-+-+.|++.+|++++-.+.+||. -|..|-+.|..++.+++..+- .|
T Consensus 813 la~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~-------h~ 878 (1636)
T KOG3616|consen 813 LAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKH-------HG 878 (1636)
T ss_pred HHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHh-------Ch
Confidence 43322 12233344444444455566777777777777666663 356677777777777776653 22
Q ss_pred ch--hhHHHHHHHhccccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCcccHHHHhccCC
Q 037236 370 NE--VTVLNVLTSCSEKSELLSLKELHGYSLRHGFDNDELVANAFVVAYAKCGSEISAENVFHGMD 433 (953)
Q Consensus 370 ~~--~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~ 433 (953)
+. .|-..+-.-+...|++..|..-+-.. .-+.+-++||-..+-+++|.++-..-.
T Consensus 879 d~l~dt~~~f~~e~e~~g~lkaae~~flea---------~d~kaavnmyk~s~lw~dayriakteg 935 (1636)
T KOG3616|consen 879 DHLHDTHKHFAKELEAEGDLKAAEEHFLEA---------GDFKAAVNMYKASELWEDAYRIAKTEG 935 (1636)
T ss_pred hhhhHHHHHHHHHHHhccChhHHHHHHHhh---------hhHHHHHHHhhhhhhHHHHHHHHhccc
Confidence 22 23344445555667777666554432 235667788888888888888776543
No 66
>PF13041 PPR_2: PPR repeat family
Probab=99.11 E-value=1.9e-10 Score=84.68 Aligned_cols=50 Identities=32% Similarity=0.509 Sum_probs=47.6
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 037236 637 KDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNH 686 (953)
Q Consensus 637 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~ 686 (953)
||+++||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
No 67
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.11 E-value=6.4e-09 Score=98.28 Aligned_cols=162 Identities=15% Similarity=0.161 Sum_probs=140.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHH
Q 037236 641 SWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVD 718 (953)
Q Consensus 641 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~ 718 (953)
+...+.-+|...|+...|.+-+++.++ ..| +..++..+...|...|..+.|.+.|+...+ +.|+ .+..|....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhH
Confidence 345577789999999999999999998 577 567888888999999999999999998876 6676 677888888
Q ss_pred HHhhcCCHHHHHHHHHhCCCCCC----hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchH
Q 037236 719 MLGRAGKLDDAFKLIIEMPEEAD----AGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDD 794 (953)
Q Consensus 719 ~l~~~g~~~eA~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 794 (953)
.++..|++++|...|++....|+ +.+|.+++....+.|+.+.|+..+++.++++|+++.+...+++...+.|++.+
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 89999999999999988876554 56788888777889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCC
Q 037236 795 VRMMRQRMKERGL 807 (953)
Q Consensus 795 a~~~~~~m~~~~~ 807 (953)
|.-..+....++.
T Consensus 192 Ar~~~~~~~~~~~ 204 (250)
T COG3063 192 ARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhccc
Confidence 9999988877654
No 68
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=1.8e-07 Score=99.61 Aligned_cols=279 Identities=13% Similarity=0.078 Sum_probs=150.3
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccchhhHHHHHHHHhCCCCchhhHhhHHH
Q 037236 436 TVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLS 515 (953)
Q Consensus 436 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 515 (953)
++...-.-..-+...+++.+.+++++...+. .++....+..-|..+...|+...-..+-..+++.- +....+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHH
Confidence 4444455556667778888888888887765 24455555555555556665554444444444432 335566777777
Q ss_pred HHHhcCChhHHHHHHHhcccCC---cccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHH
Q 037236 516 LYMHCEKSSSARVLFDEMEDKS---LVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLG 592 (953)
Q Consensus 516 ~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 592 (953)
-|.-.|+..+|++.|.+...-| ...|-.....|+-.|..++|+..+...-+.= +-...-+.-+---|.+.++.+.|
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHH
Confidence 7777788888888888765433 3478888888888888888887776654420 10111111112223444455555
Q ss_pred HHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CC
Q 037236 593 KETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLAL--GH 670 (953)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~ 670 (953)
.+++.++..... .|+.+.+-+.-+.-..+.+.+|...| +..+.. .+
T Consensus 400 e~Ff~~A~ai~P-~Dplv~~Elgvvay~~~~y~~A~~~f-------------------------------~~~l~~ik~~ 447 (611)
T KOG1173|consen 400 EKFFKQALAIAP-SDPLVLHELGVVAYTYEEYPEALKYF-------------------------------QKALEVIKSV 447 (611)
T ss_pred HHHHHHHHhcCC-CcchhhhhhhheeehHhhhHHHHHHH-------------------------------HHHHHHhhhc
Confidence 555544443321 24444444444444444444444444 444321 00
Q ss_pred CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCChhH
Q 037236 671 KP----DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKP-KLEHYACVVDMLGRAGKLDDAFKLIIEMPE-EADAGI 744 (953)
Q Consensus 671 ~P----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~~~~~ 744 (953)
.+ -..+++.|..+|.+.+.+++|+..|+..+. ..| +..+|+++.-.|...|+++.|.+.|.+... .|+-.+
T Consensus 448 ~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~---l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~ 524 (611)
T KOG1173|consen 448 LNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL---LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIF 524 (611)
T ss_pred cccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH---cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHH
Confidence 01 123455555555555555555555555543 222 245555555555555555555555554432 455555
Q ss_pred HHHHHHHH
Q 037236 745 WSSLLRSC 752 (953)
Q Consensus 745 ~~~ll~~~ 752 (953)
...+++.+
T Consensus 525 ~~~lL~~a 532 (611)
T KOG1173|consen 525 ISELLKLA 532 (611)
T ss_pred HHHHHHHH
Confidence 55555544
No 69
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.10 E-value=9.9e-09 Score=112.81 Aligned_cols=228 Identities=13% Similarity=0.141 Sum_probs=165.5
Q ss_pred HHHHHHHhccccchHHHHHHHHHHHHc-----CC-CCCc-cHHHHHHHHHHhcCCHHHHHHHhhhcCC----------C-
Q 037236 576 IVSILSACSQLSALRLGKETHCYALKA-----IL-TNDA-FVACSIIDMYAKCGCLEQSRRVFDRLKD----------K- 637 (953)
Q Consensus 576 ~~~ll~a~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~li~~y~~~g~~~~A~~~~~~~~~----------~- 637 (953)
+..+-..|...|+++.|...+....+. |. .|.+ ...+.+..+|...+++++|..+|+++.. |
T Consensus 202 ~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~ 281 (508)
T KOG1840|consen 202 LRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPA 281 (508)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence 333444555555555555555444332 21 1121 1223577889999999999999988751 1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----CCCC-CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC--CCC
Q 037236 638 DVTSWNAIIGGHGIHGYGKEAIELFEKMLAL-----GHKP-DT-FTFVGILMACNHAGLVENGLKYFSQMQKLHA--VKP 708 (953)
Q Consensus 638 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~~P-~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~~p 708 (953)
-..+++.|..+|...|++++|...+++..+- |..+ .. .-+..+...|.+.+.+++|..++....+.+. ..+
T Consensus 282 va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~ 361 (508)
T KOG1840|consen 282 VAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGE 361 (508)
T ss_pred HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccc
Confidence 2347888888999999999998888876541 2222 22 3377788899999999999999998876554 222
Q ss_pred C----hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-------C--C-ChhHHHHHHHHHHhcCChhHHHHHHHHHhcc---
Q 037236 709 K----LEHYACVVDMLGRAGKLDDAFKLIIEMPE-------E--A-DAGIWSSLLRSCRTYGALKMGEKVAKTLLEL--- 771 (953)
Q Consensus 709 ~----~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-------~--~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l--- 771 (953)
+ ..+++.|..+|...|+++||+++++++.. . + ....++.|...|...++.+.|.+.++....+
T Consensus 362 ~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~ 441 (508)
T KOG1840|consen 362 DNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKL 441 (508)
T ss_pred cchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 2 56799999999999999999999988753 1 2 2456788888999999999999988888764
Q ss_pred ----CCCCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 037236 772 ----EPDKAENYVLVSNIYAGSEKWDDVRMMRQRMK 803 (953)
Q Consensus 772 ----~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 803 (953)
.|+-..+|..|+-+|...|++++|.++...+.
T Consensus 442 ~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 442 CGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 35556678899999999999999999877664
No 70
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.09 E-value=9.3e-08 Score=97.84 Aligned_cols=277 Identities=13% Similarity=0.100 Sum_probs=151.2
Q ss_pred cCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccchhhHHHHHHHHhCCCCchhhHhhHHHHHHhcCChhHHHHH
Q 037236 450 NGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVL 529 (953)
Q Consensus 450 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 529 (953)
.|++.+|+++..+-.+.+-.| ...|..-..+.-..|+.+.+-....++-+.--.++..+.-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 467777777776655544332 2334444455566677777777777766665556666777777778888888888777
Q ss_pred HHhcc---cCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh-------hhHHHHHHHhccccchHHHHHHHHHH
Q 037236 530 FDEME---DKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCE-------ISIVSILSACSQLSALRLGKETHCYA 599 (953)
Q Consensus 530 f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~a~~~~~~~~~a~~~~~~~ 599 (953)
.+++. ..+.........+|.+.|++.+...++..|.+.|+--|+ .++..+|+-+...+..+.-++.+...
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 66554 346667778888899999999999999999888765543 34444554444443333333333322
Q ss_pred HHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHH
Q 037236 600 LKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKDK--DVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFT 676 (953)
Q Consensus 600 ~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t 676 (953)
.. ....++.+..+++.-+.+||+.++|.++..+..++ |.. -...-.+.+-++.+.-++..++-... .| ++-.
T Consensus 256 pr-~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~~e~~l~~--h~~~p~L 330 (400)
T COG3071 256 PR-KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRLIPRLRPGDPEPLIKAAEKWLKQ--HPEDPLL 330 (400)
T ss_pred cH-HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHHHhhcCCCCchHHHHHHHHHHHh--CCCChhH
Confidence 21 12224444445555555555555555554444311 221 11111233344444444444443332 22 2234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHh
Q 037236 677 FVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIE 735 (953)
Q Consensus 677 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~ 735 (953)
+.+|...|.+.+.|.+|..+|+...+ ..|+..+|+-+.++|.+.|+.++|.+..++
T Consensus 331 ~~tLG~L~~k~~~w~kA~~~leaAl~---~~~s~~~~~~la~~~~~~g~~~~A~~~r~e 386 (400)
T COG3071 331 LSTLGRLALKNKLWGKASEALEAALK---LRPSASDYAELADALDQLGEPEEAEQVRRE 386 (400)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHh---cCCChhhHHHHHHHHHHcCChHHHHHHHHH
Confidence 44445555555555555555554432 445555555555555555555555544443
No 71
>PRK12370 invasion protein regulator; Provisional
Probab=99.09 E-value=1.1e-08 Score=118.58 Aligned_cols=177 Identities=14% Similarity=0.029 Sum_probs=143.9
Q ss_pred cCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 037236 621 CGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKY 696 (953)
Q Consensus 621 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~ 696 (953)
.+++++|...+++.. +.+...|..+...+...|++++|+..|++.++ ..| +...+..+..++...|++++|...
T Consensus 317 ~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~ 394 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQT 394 (553)
T ss_pred chHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 456889999999876 45778899999999999999999999999999 578 456788889999999999999999
Q ss_pred HHHHHHhcCCCCCh-hHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCC-hhHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 037236 697 FSQMQKLHAVKPKL-EHYACVVDMLGRAGKLDDAFKLIIEMPE--EAD-AGIWSSLLRSCRTYGALKMGEKVAKTLLELE 772 (953)
Q Consensus 697 ~~~m~~~~~~~p~~-~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~ 772 (953)
++++.+ +.|+. ..+..+...+...|++++|++.+++... +|+ +..+..+..++...|+.++|+..++++....
T Consensus 395 ~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~ 471 (553)
T PRK12370 395 INECLK---LDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE 471 (553)
T ss_pred HHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc
Confidence 999977 56662 2333445567778999999999988753 353 4556777777889999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 773 PDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 773 p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
|++......++..|...| ++|....+.+.+
T Consensus 472 ~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 472 ITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred chhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 998888999999999888 477775555544
No 72
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.08 E-value=2e-08 Score=103.31 Aligned_cols=196 Identities=17% Similarity=0.171 Sum_probs=134.7
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHH
Q 037236 539 VSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMY 618 (953)
Q Consensus 539 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 618 (953)
..+..+...|...|++++|.+.|++..+. .|+ +...+..+...|
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~----------------------------------~~~~~~~la~~~ 75 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEH--DPD----------------------------------DYLAYLALALYY 75 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Ccc----------------------------------cHHHHHHHHHHH
Confidence 45666778888889999999999888764 243 233445566667
Q ss_pred HhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 037236 619 AKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGL 694 (953)
Q Consensus 619 ~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~ 694 (953)
...|++++|.+.|++.. +.+...+..+...+...|++++|++.|++.......| ....+..+..++...|++++|.
T Consensus 76 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 155 (234)
T TIGR02521 76 QQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAE 155 (234)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHH
Confidence 77777777777777654 3455667777777777888888888888877643223 3445666677777888888888
Q ss_pred HHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 037236 695 KYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLEL 771 (953)
Q Consensus 695 ~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l 771 (953)
..+++..+ ..|+ ...+..+...+...|++++|.+.+++... +++...+..+...+...|+.+.|....+.+.+.
T Consensus 156 ~~~~~~~~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 156 KYLTRALQ---IDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHH---hCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 88887765 2343 55677777778888888888877776533 334556666666777778888887777766554
Q ss_pred CC
Q 037236 772 EP 773 (953)
Q Consensus 772 ~p 773 (953)
.|
T Consensus 233 ~~ 234 (234)
T TIGR02521 233 FP 234 (234)
T ss_pred Cc
Confidence 43
No 73
>PF13041 PPR_2: PPR repeat family
Probab=99.07 E-value=2.5e-10 Score=84.10 Aligned_cols=50 Identities=26% Similarity=0.471 Sum_probs=48.0
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhcc
Q 037236 536 KSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQ 585 (953)
Q Consensus 536 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 585 (953)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68999999999999999999999999999999999999999999999874
No 74
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.07 E-value=3.3e-07 Score=101.20 Aligned_cols=396 Identities=14% Similarity=0.090 Sum_probs=230.7
Q ss_pred HcCCCCchhHHHHHHHHHHhcCCcccHHHHhccCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchH
Q 037236 399 RHGFDNDELVANAFVVAYAKCGSEISAENVFHGMDSR---TVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSI 475 (953)
Q Consensus 399 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 475 (953)
...+..|..+|..|.-+...+|+++.+-+.|++...- ....|+.+...|...|....|+.+++.-....-.|+..+.
T Consensus 316 ~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 316 LKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred HhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence 3346678899999999999999999999999886432 4568999999999999999999999887654433544443
Q ss_pred HHHH-Hhh-ccccccchhhHHHHHHHHh--CC--CCchhhHhhHHHHHHhcC-----------ChhHHHHHHHhcccC--
Q 037236 476 GSLI-LAC-THLKSLHRGKEIHGFVIRN--GL--EGDSFTGISLLSLYMHCE-----------KSSSARVLFDEMEDK-- 536 (953)
Q Consensus 476 ~~ll-~~~-~~~~~~~~a~~i~~~~~~~--g~--~~~~~~~~~li~~y~~~g-----------~~~~A~~~f~~~~~~-- 536 (953)
..+. ..| .+.+.++++..+-..++.. +. ......+..+.-+|...- .-.++.+.+++..+.
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~ 475 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP 475 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 3333 334 3456667766666666552 11 112333444444443221 123344555554332
Q ss_pred -CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHc-CCCCCccHHHHH
Q 037236 537 -SLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKA-ILTNDAFVACSI 614 (953)
Q Consensus 537 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l 614 (953)
|....--+.--|+..++.+.|+...++..+.+-.-+...|..+.-.++..+++..|..+.+..... |.. -..-..-
T Consensus 476 ~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N--~~l~~~~ 553 (799)
T KOG4162|consen 476 TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDN--HVLMDGK 553 (799)
T ss_pred CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhh--hhhchhh
Confidence 222222233345666777777777777777655556666665555666666777777776555432 211 0000011
Q ss_pred HHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-C-HHHHHHHHHHHHhcCCHHH
Q 037236 615 IDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-D-TFTFVGILMACNHAGLVEN 692 (953)
Q Consensus 615 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~-~~t~~~ll~a~~~~g~~~~ 692 (953)
+..-..-++.++|......+. ..|...- +..+.|+-...+++...+.-.--.| + ..|+..+..-... +...
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L----~~we~~~-~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~--~~~~ 626 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKL----ALWEAEY-GVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS--QLKS 626 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHH----HHHHhhh-hHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh--hhhh
Confidence 111222445555544433322 1111110 1122233334445554443321133 2 2333333322221 1111
Q ss_pred HHHHHHHHHHhcCCCCCh--------hHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHH
Q 037236 693 GLKYFSQMQKLHAVKPKL--------EHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGE 762 (953)
Q Consensus 693 a~~~~~~m~~~~~~~p~~--------~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~ 762 (953)
+..-.. + ......|+. ..|....+.+.+.+..++|...+.+... +-.+.+|.-.+..+-..|+.++|.
T Consensus 627 ~~se~~-L-p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~ 704 (799)
T KOG4162|consen 627 AGSELK-L-PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAK 704 (799)
T ss_pred cccccc-c-CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHH
Confidence 110000 1 223344442 3466778899999999999977766543 335667777777778899999999
Q ss_pred HHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHH--HHHHHHHC
Q 037236 763 KVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRM--MRQRMKER 805 (953)
Q Consensus 763 ~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~--~~~~m~~~ 805 (953)
.++..++.++|+++.+...++.+|.+.|+-.-|.. +...+-+.
T Consensus 705 ~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~ 749 (799)
T KOG4162|consen 705 EAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRL 749 (799)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh
Confidence 99999999999999999999999999998777776 55555443
No 75
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.02 E-value=1.4e-07 Score=93.46 Aligned_cols=283 Identities=12% Similarity=0.110 Sum_probs=168.1
Q ss_pred cCCChhHHHHHHHHHHhccCCCCCchh-hHHHHHHHhccccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCccc
Q 037236 346 MAGDVCGTFDLLRKMQMKEEEMKPNEV-TVLNVLTSCSEKSELLSLKELHGYSLRHGFDNDELVANAFVVAYAKCGSEIS 424 (953)
Q Consensus 346 ~~g~~~~A~~l~~~m~~~g~~~~p~~~-t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 424 (953)
-..++++|+++|-+|.+.. |..+ +-.++-+.+.+.|..+.|..+|..++++. |...-.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d----~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~sp---dlT~~q-------------- 105 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED----PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESP---DLTFEQ-------------- 105 (389)
T ss_pred hhcCcchHHHHHHHHHhcC----chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCC---CCchHH--------------
Confidence 3468899999999997632 2221 22233334455566666666665554431 110000
Q ss_pred HHHHhccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccchhhHHHHHHHHhCCC
Q 037236 425 AENVFHGMDSRTVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLE 504 (953)
Q Consensus 425 A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~ 504 (953)
-......|..-|...|-++.|..+|..+.+.+.-
T Consensus 106 -----------r~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~ef----------------------------------- 139 (389)
T COG2956 106 -----------RLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEF----------------------------------- 139 (389)
T ss_pred -----------HHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhh-----------------------------------
Confidence 0112334556667777777777777777654310
Q ss_pred CchhhHhhHHHHHHhcCChhHHHHHHHhcccCCccc--------HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhH
Q 037236 505 GDSFTGISLLSLYMHCEKSSSARVLFDEMEDKSLVS--------WNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISI 576 (953)
Q Consensus 505 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~--------~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 576 (953)
-......|+..|-+..++++|.++-+++.+-+... |.-+...+....+.+.|..++.+..+.. |+
T Consensus 140 -a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~--~~---- 212 (389)
T COG2956 140 -AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD--KK---- 212 (389)
T ss_pred -hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC--cc----
Confidence 11122334555555666666665555444332222 3334444455667778888887777652 32
Q ss_pred HHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHH----HHHHHHHHHHhc
Q 037236 577 VSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKDKDVT----SWNAIIGGHGIH 652 (953)
Q Consensus 577 ~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~----~~~~li~~~~~~ 652 (953)
.+...-.+.+.+...|+++.|.+.++.+.+.|+. +...|..+|.+.
T Consensus 213 ------------------------------cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~l 262 (389)
T COG2956 213 ------------------------------CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQL 262 (389)
T ss_pred ------------------------------ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHh
Confidence 3444455677888889999999999988865543 566778899999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhh---cCCHHHH
Q 037236 653 GYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGR---AGKLDDA 729 (953)
Q Consensus 653 g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~---~g~~~eA 729 (953)
|+.++.+..+.++.+. .|+...-..+...-....-.++|..+..+-++ -+|+...+..|++.-.. -|+..+.
T Consensus 263 g~~~~~~~fL~~~~~~--~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~---r~Pt~~gf~rl~~~~l~daeeg~~k~s 337 (389)
T COG2956 263 GKPAEGLNFLRRAMET--NTGADAELMLADLIELQEGIDAAQAYLTRQLR---RKPTMRGFHRLMDYHLADAEEGRAKES 337 (389)
T ss_pred CCHHHHHHHHHHHHHc--cCCccHHHHHHHHHHHhhChHHHHHHHHHHHh---hCCcHHHHHHHHHhhhccccccchhhh
Confidence 9999999999998884 44444444444433344445666665554434 47998888888876532 3455566
Q ss_pred HHHHHhCC
Q 037236 730 FKLIIEMP 737 (953)
Q Consensus 730 ~~~~~~~~ 737 (953)
+.++..|.
T Consensus 338 L~~lr~mv 345 (389)
T COG2956 338 LDLLRDMV 345 (389)
T ss_pred HHHHHHHH
Confidence 66665553
No 76
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.01 E-value=5.6e-07 Score=92.25 Aligned_cols=283 Identities=11% Similarity=0.007 Sum_probs=156.9
Q ss_pred CCChhHHHHHHHHHHhccCCCCCchhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCcccHH
Q 037236 347 AGDVCGTFDLLRKMQMKEEEMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLRHGFDNDELVANAFVVAYAKCGSEISAE 426 (953)
Q Consensus 347 ~g~~~~A~~l~~~m~~~g~~~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 426 (953)
.|++..|.++..+-.+.+ -. ....|.....+..+.|+.+.+-+.+..+.+..-.++..+.-+........|+.+.|.
T Consensus 97 eG~~~qAEkl~~rnae~~--e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~ 173 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG--EQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAR 173 (400)
T ss_pred cCcHHHHHHHHHHhhhcC--cc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHH
Confidence 355555555555544432 11 122333344445555666666666655555433455556666666677777777776
Q ss_pred HHhcc---CCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccchhhHHHHHHHHhCC
Q 037236 427 NVFHG---MDSRTVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGL 503 (953)
Q Consensus 427 ~~f~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~ 503 (953)
.-.++ |..+++.........|.+.|++.+...++.+|.+.|+--|+..- .+
T Consensus 174 ~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~-----------------~l--------- 227 (400)
T COG3071 174 ENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA-----------------RL--------- 227 (400)
T ss_pred HHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH-----------------HH---------
Confidence 65544 44567778888888999999999999999998888754443211 00
Q ss_pred CCchhhHhhHHHHHHhcCChhHHHHHHHhccc---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHH
Q 037236 504 EGDSFTGISLLSLYMHCEKSSSARVLFDEMED---KSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSIL 580 (953)
Q Consensus 504 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 580 (953)
...++..+++-....+..+.-...++..+. .++..-.+++.-+.+.|+.++|.++..+..+.+..|+. ..+
T Consensus 228 --e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~ 301 (400)
T COG3071 228 --EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRL 301 (400)
T ss_pred --HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHH
Confidence 112233333333333333444445555553 34555666777788888888888888888887777752 222
Q ss_pred HHhccccchHHHHHHHHHHHH-cCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC--CCCHHHHHHHHHHHHhcCChHH
Q 037236 581 SACSQLSALRLGKETHCYALK-AILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK--DKDVTSWNAIIGGHGIHGYGKE 657 (953)
Q Consensus 581 ~a~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~ 657 (953)
-.+.+.++.+.-.+..+...+ .+- ++..+.+|...|.+.+.+.+|...|+... .++..+|+-+..+|.+.|+..+
T Consensus 302 ~~~l~~~d~~~l~k~~e~~l~~h~~--~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~ 379 (400)
T COG3071 302 IPRLRPGDPEPLIKAAEKWLKQHPE--DPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEE 379 (400)
T ss_pred HhhcCCCCchHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHH
Confidence 234444444444444333333 222 22445555555555555555555555433 3444455555555555555555
Q ss_pred HHHHHHHHH
Q 037236 658 AIELFEKML 666 (953)
Q Consensus 658 A~~l~~~m~ 666 (953)
|.+.+++.+
T Consensus 380 A~~~r~e~L 388 (400)
T COG3071 380 AEQVRREAL 388 (400)
T ss_pred HHHHHHHHH
Confidence 555554443
No 77
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.00 E-value=2.3e-08 Score=98.66 Aligned_cols=156 Identities=16% Similarity=0.199 Sum_probs=104.8
Q ss_pred HHHHhcCCHHHHHHHhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 037236 616 DMYAKCGCLEQSRRVFDRLKD---KDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVEN 692 (953)
Q Consensus 616 ~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~ 692 (953)
..+...++.++|.++|....+ .++.+.-.+..+|.-.|+++-|+..|+++++.|+. +...|..+.-.|.-.+++|-
T Consensus 298 Ri~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 298 RIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhh
Confidence 334444555555555555442 23334444445555555666666666666655532 44555555555555555555
Q ss_pred HHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC--hhHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 037236 693 GLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPEEAD--AGIWSSLLRSCRTYGALKMGEKVAKTLLE 770 (953)
Q Consensus 693 a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 770 (953)
++.-|++.... -- +|+ +-+|.+|.......||+..|.+.++.++.
T Consensus 377 ~L~sf~RAlst-at--------------------------------~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~ 423 (478)
T KOG1129|consen 377 VLPSFQRALST-AT--------------------------------QPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT 423 (478)
T ss_pred hHHHHHHHHhh-cc--------------------------------CcchhhhhhhccceeEEeccchHHHHHHHHHHhc
Confidence 55555554321 01 232 45888888888889999999999999999
Q ss_pred cCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHC
Q 037236 771 LEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKER 805 (953)
Q Consensus 771 l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 805 (953)
-+|++..+++.|+-+-...|+.++|..+.+..+..
T Consensus 424 ~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 424 SDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 99999999999999999999999999999888764
No 78
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.00 E-value=1.2e-05 Score=91.19 Aligned_cols=639 Identities=14% Similarity=0.085 Sum_probs=320.2
Q ss_pred cccHHHHHHHHHhcCCCHHHHHHHHHHhhc-CCCChhHHHHHHHHhccCCChhHHHHHHHHHhhhcCCCCCchhhhHHHH
Q 037236 28 GLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQACGHEKDIEIGKRVHELISASTQFSNDFIINTRLIT 106 (953)
Q Consensus 28 ~~~~~~~i~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Li~ 106 (953)
...|..+..-|+... +-..|...|+++.+ ++.+..........++...+++.|..+.-..-++.....-..-|-...-
T Consensus 492 apaf~~LG~iYrd~~-Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSD-DMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGP 570 (1238)
T ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccc
Confidence 557888888888888 88889999999988 6667777778888899999999998884333211111111122223455
Q ss_pred HHHhcCChhhHHHHhhcCCC--C-CchhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcccHHHHHHH--hhcCCCh
Q 037236 107 MYSLCGFPLDSRRVFDSLKT--R-NLFQWNALVSGFTKNELYPDVLSIFVELLSDTELKPDNFTFPCVIKA--CGGIADV 181 (953)
Q Consensus 107 ~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~ll~~--~~~~~~~ 181 (953)
.|.+.++...|..-|+..-+ | |.-+|..+..+|.+.|.+..|+..|.+... +.|+. +|...-.+ -+..|..
T Consensus 571 yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~---LrP~s-~y~~fk~A~~ecd~GkY 646 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL---LRPLS-KYGRFKEAVMECDNGKY 646 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh---cCcHh-HHHHHHHHHHHHHhhhH
Confidence 67788888899888887543 3 556899999999999999999999988766 55653 33333222 3667888
Q ss_pred hhHhHHHHHHHHhCCCCChhHHHHHHHHhhcc-------CChHHHHHHhccCCCCCeecHHHHH-HHHHcCC----CchH
Q 037236 182 SFGSGVHGMAAKMGLIGDVFVSNALIAMYGKC-------AFVEEMVKLFEVMPERNLVSWNSII-CGSSENG----FSCE 249 (953)
Q Consensus 182 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-------g~~~~A~~~f~~m~~~~~~~~~~li-~~~~~~g----~~~~ 249 (953)
.++...++.++..- ..-...-+.+...+.|+ |-...|...|+.-. ..+...+ ...+... -...
T Consensus 647 keald~l~~ii~~~-s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksi----e~f~~~l~h~~~~~~~~Wi~asd 721 (1238)
T KOG1127|consen 647 KEALDALGLIIYAF-SLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSI----ESFIVSLIHSLQSDRLQWIVASD 721 (1238)
T ss_pred HHHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH----HHHHHHHHHhhhhhHHHHHHHhH
Confidence 88888877776532 11111222233333222 22222222222111 1111111 0000000 0123
Q ss_pred HHHHHHHhhhccCCCCCChhhHHHHHHhhhcCCCchHHHHHHHHHHHhCCCCCchHHHHHHHhhHhcCChhHHHHHHhcC
Q 037236 250 SFDLLIKMMGCEEGFIPDVATVVTVLPVCAGEGNVDLGILVHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFDKN 329 (953)
Q Consensus 250 A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~ 329 (953)
|..+|.+. . .. .|+......+.. +..+.+..++.. ++-.-.+|+- ...++-
T Consensus 722 ac~~f~q~--e-~~-~vn~h~l~il~~----------------q~e~~~~l~~~d----~l~Lg~~c~~--~hlsl~--- 772 (1238)
T KOG1127|consen 722 ACYIFSQE--E-PS-IVNMHYLIILSK----------------QLEKTGALKKND----LLFLGYECGI--AHLSLA--- 772 (1238)
T ss_pred HHHHHHHh--c-cc-chHHHHHHHHHH----------------HHHhcccCcchh----HHHHHHHHhh--HHHHHh---
Confidence 44455554 2 11 333322222222 222222222221 1111111111 011111
Q ss_pred CCCCcccHHHHHHHHHc----C----CChhHHHHHHHHHHhccCCCCCchhhHHHHHHHhccccchHHHHHHHHHHHHcC
Q 037236 330 NNKNVVSWNTIIGAFSM----A----GDVCGTFDLLRKMQMKEEEMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLRHG 401 (953)
Q Consensus 330 ~~~d~~~~~~li~~~~~----~----g~~~~A~~l~~~m~~~g~~~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g 401 (953)
-+..+|..++..|.+ . .+...|+..+.+..+. ..|...+...|...
T Consensus 773 --~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L----~ann~~~WnaLGVl-------------------- 826 (1238)
T KOG1127|consen 773 --IHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSL----CANNEGLWNALGVL-------------------- 826 (1238)
T ss_pred --hccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH----hhccHHHHHHHHHh--------------------
Confidence 125567666655543 1 1123455555544432 12222222222222
Q ss_pred CCCchhHHHHHHHHHHhcCCcccHHHHhccC---CCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCC-CcchHHH
Q 037236 402 FDNDELVANAFVVAYAKCGSEISAENVFHGM---DSRTVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEP-DLFSIGS 477 (953)
Q Consensus 402 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ 477 (953)
...|.+.-|...|-.- .++...+|.-+...+.++.+++.|...|...+.. .| |...+..
T Consensus 827 ---------------sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSL--dP~nl~~WlG 889 (1238)
T KOG1127|consen 827 ---------------SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSL--DPLNLVQWLG 889 (1238)
T ss_pred ---------------hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhc--CchhhHHHHH
Confidence 2223333333333221 1235566777777777777777777777776653 22 2233322
Q ss_pred HHHhhccccccchhhHHHHHHHHhCCCCchhhHhhHHHHHHhcCChhHHHHHHHhcc--------cCCcccHHHHHHHHH
Q 037236 478 LILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEME--------DKSLVSWNTMIAGYS 549 (953)
Q Consensus 478 ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~--------~~~~~~~~~li~~~~ 549 (953)
....... .|+.-++..+|..-. -++..-|-.-.....
T Consensus 890 ~Ali~ea-----------------------------------vG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~ 934 (1238)
T KOG1127|consen 890 EALIPEA-----------------------------------VGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHL 934 (1238)
T ss_pred HHHhHHH-----------------------------------HHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHH
Confidence 2222222 233333333333211 022233333333344
Q ss_pred hcCChhHHHHHHHHHHH---------cCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHc-CCCCCccHHH----HHH
Q 037236 550 QNKLPVEAIVLFRRMFS---------IGVQPCEISIVSILSACSQLSALRLGKETHCYALKA-ILTNDAFVAC----SII 615 (953)
Q Consensus 550 ~~g~~~~A~~~~~~m~~---------~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~----~li 615 (953)
++|+.++-+..-+.+-. .+.+-+.+.|........+++..+.+......++.. ....+...|+ .+.
T Consensus 935 ~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~g 1014 (1238)
T KOG1127|consen 935 QNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAG 1014 (1238)
T ss_pred hccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Confidence 55554443333222211 123334455665555555665555554443332210 0111333333 345
Q ss_pred HHHHhcCCHHHHHHHhhhcC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCH-HHHHHHHHHHHhcCCHHH
Q 037236 616 DMYAKCGCLEQSRRVFDRLK-DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALG-HKPDT-FTFVGILMACNHAGLVEN 692 (953)
Q Consensus 616 ~~y~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~P~~-~t~~~ll~a~~~~g~~~~ 692 (953)
..+...|.++.|...+.... +-|..+-..-+.. ...|+++++++.|++...-- -.-|. +....++-+...++.-+.
T Consensus 1015 RL~lslgefe~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~ 1093 (1238)
T KOG1127|consen 1015 RLELSLGEFESAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKND 1093 (1238)
T ss_pred hhhhhhcchhhHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchH
Confidence 56677788888887777655 2222222222222 34678999999999998731 11132 334445555567777788
Q ss_pred HHHHHHHHHHhcCCCCChhHHHHHHHHHhh---cCCHHHHHHHHHhCCC----CCChhHHHHHHHHHHhcCChhHHHHHH
Q 037236 693 GLKYFSQMQKLHAVKPKLEHYACVVDMLGR---AGKLDDAFKLIIEMPE----EADAGIWSSLLRSCRTYGALKMGEKVA 765 (953)
Q Consensus 693 a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~---~g~~~eA~~~~~~~~~----~~~~~~~~~ll~~~~~~g~~~~a~~~~ 765 (953)
|...+-+..... .|+....-+|.-++.- .-...-+++-+++.+. .-++.....++ +...|+-..+.+..
T Consensus 1094 A~~lLfe~~~ls--~~~~~sll~L~A~~ild~da~~ssaileel~kl~k~e~~~~~~~ll~e~i--~~~~~r~~~vk~~~ 1169 (1238)
T KOG1127|consen 1094 AQFLLFEVKSLS--KVQASSLLPLPAVYILDADAHGSSAILEELEKLLKLEWFCWPPGLLKELI--YALQGRSVAVKKQI 1169 (1238)
T ss_pred HHHHHHHHHHhC--ccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhHHhccChhHHHHHH--HHHhhhhHHHHHHH
Confidence 887766664432 3444444444333322 2222223333333322 11222222222 46778888999999
Q ss_pred HHHhccCCCCcchHHHHHHHHHh
Q 037236 766 KTLLELEPDKAENYVLVSNIYAG 788 (953)
Q Consensus 766 ~~~~~l~p~~~~~~~~l~~~y~~ 788 (953)
+++.-..|.|+..+.+|++=|++
T Consensus 1170 qr~~h~~P~~~~~WslL~vrya~ 1192 (1238)
T KOG1127|consen 1170 QRAVHSNPGDPALWSLLSVRYAQ 1192 (1238)
T ss_pred HHHHhcCCCChHHHHHHHHHHHH
Confidence 99999999999999999864443
No 79
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.93 E-value=1.1e-05 Score=87.78 Aligned_cols=218 Identities=11% Similarity=0.029 Sum_probs=124.3
Q ss_pred hhcCCCchHHHHHHHHHHHhCCCCCchHHHHHHHhhHhcCChhHHHHHHhcCCC---CCcccHHHHHHHHHcCCChhHHH
Q 037236 278 CAGEGNVDLGILVHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFDKNNN---KNVVSWNTIIGAFSMAGDVCGTF 354 (953)
Q Consensus 278 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~ 354 (953)
|-..+++..+....+.+++ +.+....+.....-.+...|+.++|......... ++.+.|..+.-.+-...++++|+
T Consensus 17 ~yE~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eai 95 (700)
T KOG1156|consen 17 CYETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAI 95 (700)
T ss_pred HHHHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHH
Confidence 3355677777777777777 3333334444444445567888999888876544 56678999988888889999999
Q ss_pred HHHHHHHhccCCCCCchhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCcccHHHHhcc---
Q 037236 355 DLLRKMQMKEEEMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLRHGFDNDELVANAFVVAYAKCGSEISAENVFHG--- 431 (953)
Q Consensus 355 ~l~~~m~~~g~~~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~--- 431 (953)
..|+.... +.||... .+.-|--.-.+.|+++.....-..
T Consensus 96 Kcy~nAl~----~~~dN~q----------------------------------ilrDlslLQ~QmRd~~~~~~tr~~LLq 137 (700)
T KOG1156|consen 96 KCYRNALK----IEKDNLQ----------------------------------ILRDLSLLQIQMRDYEGYLETRNQLLQ 137 (700)
T ss_pred HHHHHHHh----cCCCcHH----------------------------------HHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 99999887 4455332 111111111222222221111111
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCC-CCCCcchHHHHHHh------hccccccchhhHHHHHHHHhCCC
Q 037236 432 MDSRTVSSWNALICGYAQNGDHLKALDYFLQMTHSD-LEPDLFSIGSLILA------CTHLKSLHRGKEIHGFVIRNGLE 504 (953)
Q Consensus 432 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~------~~~~~~~~~a~~i~~~~~~~g~~ 504 (953)
.....-..|..+..++.-.|++..|..+.++..... -.|+...+.-.... ....|.++.+.+.+..-.. .+.
T Consensus 138 l~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~-~i~ 216 (700)
T KOG1156|consen 138 LRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK-QIV 216 (700)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh-HHH
Confidence 122245678889999999999999999999887754 34555555433222 1223333333333222111 111
Q ss_pred CchhhHhhHHHHHHhcCChhHHHHHHHhccc
Q 037236 505 GDSFTGISLLSLYMHCEKSSSARVLFDEMED 535 (953)
Q Consensus 505 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~ 535 (953)
.....--.-.+.+.+.+++++|..++..+..
T Consensus 217 Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~ 247 (700)
T KOG1156|consen 217 DKLAFEETKADLLMKLGQLEEAVKVYRRLLE 247 (700)
T ss_pred HHHHHhhhHHHHHHHHhhHHhHHHHHHHHHh
Confidence 1222223334556666666666666666554
No 80
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=4.7e-06 Score=89.50 Aligned_cols=363 Identities=12% Similarity=0.073 Sum_probs=215.4
Q ss_pred HhcCCcccHHHHhccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCC-CcchHHHHHHhhccccccchhhHHH
Q 037236 417 AKCGSEISAENVFHGMDSRTVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEP-DLFSIGSLILACTHLKSLHRGKEIH 495 (953)
Q Consensus 417 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~i~ 495 (953)
.+.+..++|.+.++.....|..+.-.-...+.+.|++++|+.+|+.+.+.+..- |...-..++.+-... ..
T Consensus 90 Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l-------~~- 161 (652)
T KOG2376|consen 90 YRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL-------QV- 161 (652)
T ss_pred HHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh-------hH-
Confidence 467889999999986655565555556677888999999999999998765432 222222222221111 00
Q ss_pred HHHHHhCCCCchhhHhh---HHHHHHhcCChhHHHHHHHhcc--------cCCcc----------cHHHHHHHHHhcCCh
Q 037236 496 GFVIRNGLEGDSFTGIS---LLSLYMHCEKSSSARVLFDEME--------DKSLV----------SWNTMIAGYSQNKLP 554 (953)
Q Consensus 496 ~~~~~~g~~~~~~~~~~---li~~y~~~g~~~~A~~~f~~~~--------~~~~~----------~~~~li~~~~~~g~~ 554 (953)
..+......| ..+|.. ..-.+...|++.+|+++++... +.|.- .--.|.-.+-..|+.
T Consensus 162 ~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt 240 (652)
T KOG2376|consen 162 QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT 240 (652)
T ss_pred HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 0111111122 223332 2345667899999999998772 11111 112244566778999
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHH---HHhccccchHHH--HHHH------------HHHHHcCCCCCccHHHHHHHH
Q 037236 555 VEAIVLFRRMFSIGVQPCEISIVSIL---SACSQLSALRLG--KETH------------CYALKAILTNDAFVACSIIDM 617 (953)
Q Consensus 555 ~~A~~~~~~m~~~g~~p~~~t~~~ll---~a~~~~~~~~~a--~~~~------------~~~~~~~~~~~~~~~~~li~~ 617 (953)
++|.+++...++.. .+|......+. .+...-..+-.+ ...+ ..+.+. -.....--++++.+
T Consensus 241 ~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~-qk~~i~~N~~lL~l 318 (652)
T KOG2376|consen 241 AEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKK-QKQAIYRNNALLAL 318 (652)
T ss_pred HHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 99999999998875 45543332222 222222222221 1111 111110 00122233456666
Q ss_pred HHhcCCHHHHHHHhhhcCCCC-HHHHHHHHH-HHH-hcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHH
Q 037236 618 YAKCGCLEQSRRVFDRLKDKD-VTSWNAIIG-GHG-IHGYGKEAIELFEKMLALGHKPDT--FTFVGILMACNHAGLVEN 692 (953)
Q Consensus 618 y~~~g~~~~A~~~~~~~~~~~-~~~~~~li~-~~~-~~g~~~~A~~l~~~m~~~g~~P~~--~t~~~ll~a~~~~g~~~~ 692 (953)
|. +..+.+.++-...+..- ...+..++. ++. +.....+|.+++.+.-+. .|.. +.....+......|+++.
T Consensus 319 ~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~ 394 (652)
T KOG2376|consen 319 FT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEV 394 (652)
T ss_pred Hh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHH
Confidence 64 45667777777776322 223333433 322 223577888888887774 5644 445555666778999999
Q ss_pred HHHHHH--------HHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC--------CCCC-hhHHHHHHHHHHhc
Q 037236 693 GLKYFS--------QMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMP--------EEAD-AGIWSSLLRSCRTY 755 (953)
Q Consensus 693 a~~~~~--------~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~--------~~~~-~~~~~~ll~~~~~~ 755 (953)
|.+++. .+.+ .+.. +.+...++.++.+.+.-+-|.+++.+.. ..+. ..+|.-+...-.++
T Consensus 395 A~~il~~~~~~~~ss~~~-~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~ 471 (652)
T KOG2376|consen 395 ALEILSLFLESWKSSILE-AKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRH 471 (652)
T ss_pred HHHHHHHHhhhhhhhhhh-hccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhc
Confidence 999998 4422 3333 4566788899999887655555554432 2222 23444445555678
Q ss_pred CChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHH
Q 037236 756 GALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMM 798 (953)
Q Consensus 756 g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~ 798 (953)
|+-++|...++++++.+|+|....+.+.-.|+... .+.|..+
T Consensus 472 G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l 513 (652)
T KOG2376|consen 472 GNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAESL 513 (652)
T ss_pred CchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHH
Confidence 99999999999999999999999999988888653 3444444
No 81
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.91 E-value=3.3e-07 Score=97.10 Aligned_cols=225 Identities=11% Similarity=-0.005 Sum_probs=152.5
Q ss_pred CChhHHHHHHHhcccC-------CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHH
Q 037236 521 EKSSSARVLFDEMEDK-------SLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGK 593 (953)
Q Consensus 521 g~~~~A~~~f~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 593 (953)
+..+.+..-+.++... ....|..+...|.+.|+.++|+..|++..+. .|+
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--~P~--------------------- 96 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--RPD--------------------- 96 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCC---------------------
Confidence 4555566555555421 1234666666677777777777777666653 343
Q ss_pred HHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 037236 594 ETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGH 670 (953)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 670 (953)
+...++.+...|...|++++|...|++.. +.+..+|..+...+...|++++|++.|++..+ .
T Consensus 97 -------------~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~ 161 (296)
T PRK11189 97 -------------MADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--D 161 (296)
T ss_pred -------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--h
Confidence 56788889999999999999999999886 34577889999999999999999999999998 5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHH--HHHHHHhCCC------CCCh
Q 037236 671 KPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDD--AFKLIIEMPE------EADA 742 (953)
Q Consensus 671 ~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~e--A~~~~~~~~~------~~~~ 742 (953)
.|+..........+...++.++|...|++... ...|+...+ .++..+ .|++.+ +.+.+.+... +...
T Consensus 162 ~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~~~~~~~~~-~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ 236 (296)
T PRK11189 162 DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--KLDKEQWGW-NIVEFY--LGKISEETLMERLKAGATDNTELAERLC 236 (296)
T ss_pred CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--hCCccccHH-HHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHH
Confidence 67544222222334567889999999977643 233433222 333333 454433 3433332211 1234
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHhccCC-CCcchHHHHHHHHHh
Q 037236 743 GIWSSLLRSCRTYGALKMGEKVAKTLLELEP-DKAENYVLVSNIYAG 788 (953)
Q Consensus 743 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p-~~~~~~~~l~~~y~~ 788 (953)
..|..++..+...|+.+.|...++++++++| +.......+..+...
T Consensus 237 ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~ 283 (296)
T PRK11189 237 ETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALL 283 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999997 555554555555443
No 82
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.89 E-value=2.4e-05 Score=88.91 Aligned_cols=275 Identities=12% Similarity=0.042 Sum_probs=168.1
Q ss_pred hHHHHHHHhcc---cCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHH
Q 037236 524 SSARVLFDEME---DKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYAL 600 (953)
Q Consensus 524 ~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 600 (953)
..|...+.... ..+...||.|.-. ...|.+.-|...|-+-.... +-+..+|..+--.|....+++.|.+.+..+.
T Consensus 800 ~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~q 877 (1238)
T KOG1127|consen 800 CTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ 877 (1238)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhh
Confidence 35666666543 3566788887655 55566666666665554432 3455677777777788888888888888777
Q ss_pred HcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC--------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----
Q 037236 601 KAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK--------DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLAL---- 668 (953)
Q Consensus 601 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---- 668 (953)
...+. +...|--..-.-...|+.-++..+|..-. -++..-|-.-..-...+|+.++-+..-+++-..
T Consensus 878 SLdP~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al 956 (1238)
T KOG1127|consen 878 SLDPL-NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLAL 956 (1238)
T ss_pred hcCch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHH
Confidence 65432 33333333333345677777777776521 245555655555566777766554443332211
Q ss_pred ----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHH----HHHHHhhcCCHHHHHHHHHhCCCC
Q 037236 669 ----GHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYAC----VVDMLGRAGKLDDAFKLIIEMPEE 739 (953)
Q Consensus 669 ----g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~----lv~~l~~~g~~~eA~~~~~~~~~~ 739 (953)
+-.| +...|...+....+.+.+.+|.+...+.+.-...+-+...|+. ...++...|.++.|..-+...+.+
T Consensus 957 ~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~e 1036 (1238)
T KOG1127|consen 957 SYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWME 1036 (1238)
T ss_pred HHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchh
Confidence 1245 5577888888888888888888887776554334444455553 334556678888877777666555
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHH---HHHhcCCchHHHHHHHHH
Q 037236 740 ADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSN---IYAGSEKWDDVRMMRQRM 802 (953)
Q Consensus 740 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~---~y~~~g~~~~a~~~~~~m 802 (953)
.+.-+-++-+.. .-.|+++.+...+++++.+-.++.-.-++++. ....++.-+.|....-+.
T Consensus 1037 vdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~ 1101 (1238)
T KOG1127|consen 1037 VDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEV 1101 (1238)
T ss_pred HHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHH
Confidence 555554444443 45678899999999998876555544444444 344556666666644333
No 83
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=9.7e-06 Score=83.13 Aligned_cols=280 Identities=10% Similarity=-0.028 Sum_probs=154.8
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHH-HhccccchHHHHHHHHHHHHcCCCCCccHHHHHH
Q 037236 537 SLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILS-ACSQLSALRLGKETHCYALKAILTNDAFVACSII 615 (953)
Q Consensus 537 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 615 (953)
|+.....+...+...|+.++|+..|++.+.. .|+.++-.-+-. -+...|+.+....+...+....- .....|-.-.
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV~~ 307 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK-YTASHWFVHA 307 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh-cchhhhhhhh
Confidence 5556666777777777777777777766543 344332111111 12334555555444444332210 0111121112
Q ss_pred HHHHhcCCHHHHHHHhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHH
Q 037236 616 DMYAKCGCLEQSRRVFDRLKD---KDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVE 691 (953)
Q Consensus 616 ~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~ 691 (953)
.......+++.|..+-++..+ +++..+-.-...+...|+.++|.-.|+..+. +.| +...|..|+..|...|.+.
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHH
Confidence 222334556666666665542 3333443334456666777777777776666 455 5566777777777777777
Q ss_pred HHHHHHHHHHHhcCCCCChhHHHHHH-HHHhh-cCCHHHHHHHHHhCCC-CCCh-hHHHHHHHHHHhcCChhHHHHHHHH
Q 037236 692 NGLKYFSQMQKLHAVKPKLEHYACVV-DMLGR-AGKLDDAFKLIIEMPE-EADA-GIWSSLLRSCRTYGALKMGEKVAKT 767 (953)
Q Consensus 692 ~a~~~~~~m~~~~~~~p~~~~~~~lv-~~l~~-~g~~~eA~~~~~~~~~-~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~ 767 (953)
||.-.-+...+..+ -+..+...+. +.+.- ----++|.+++++... +|+- .....+...|...|..+.+...+++
T Consensus 386 EA~~~An~~~~~~~--~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 386 EANALANWTIRLFQ--NSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHHHHhh--cchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 76665555444221 1223332221 22211 1123566777765543 4543 2445555566777777777777777
Q ss_pred HhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCccCCceeEEEeCCEEEEEeeCCCCCccHHHHHHHHHHHHH
Q 037236 768 LLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKERGLQKEAGCSWIELGGNIHSFVVGDNMHPEWEEIRGMWGRLEE 847 (953)
Q Consensus 768 ~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~~ 847 (953)
.+...| |...++.|++++...+.+.+|...+..... ..|+.+.-.+-|+.|++
T Consensus 464 ~L~~~~-D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--------------------------~dP~~~~sl~Gl~~lEK 516 (564)
T KOG1174|consen 464 HLIIFP-DVNLHNHLGDIMRAQNEPQKAMEYYYKALR--------------------------QDPKSKRTLRGLRLLEK 516 (564)
T ss_pred HHhhcc-ccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--------------------------cCccchHHHHHHHHHHh
Confidence 777666 344567777777777777777776554433 56888888888888877
Q ss_pred HHH
Q 037236 848 QIS 850 (953)
Q Consensus 848 ~~~ 850 (953)
+++
T Consensus 517 ~~~ 519 (564)
T KOG1174|consen 517 SDD 519 (564)
T ss_pred ccC
Confidence 765
No 84
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.84 E-value=8.5e-06 Score=81.68 Aligned_cols=81 Identities=11% Similarity=0.073 Sum_probs=40.2
Q ss_pred hhHHHHHHhcCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHhccCCCCCchhhHHHHHHH-----hccccchHHHHHH
Q 037236 319 LSEAQILFDKNNNKNVVSWNTIIGAFSMAGDVCGTFDLLRKMQMKEEEMKPNEVTVLNVLTS-----CSEKSELLSLKEL 393 (953)
Q Consensus 319 ~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~p~~~t~~~ll~~-----~~~~~~~~~a~~i 393 (953)
-+.|++++-.+...=+..--.++--|.++++..+|..+.+++.. ..|-.+....+..+ ..+...+..|.+.
T Consensus 270 gEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P----ttP~EyilKgvv~aalGQe~gSreHlKiAqqf 345 (557)
T KOG3785|consen 270 GEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP----TTPYEYILKGVVFAALGQETGSREHLKIAQQF 345 (557)
T ss_pred CccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC----CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHH
Confidence 35566655433221122222345567889999999998877632 34444433333322 1122234445555
Q ss_pred HHHHHHcCCC
Q 037236 394 HGYSLRHGFD 403 (953)
Q Consensus 394 ~~~~~~~g~~ 403 (953)
+..+-.++..
T Consensus 346 fqlVG~Sa~e 355 (557)
T KOG3785|consen 346 FQLVGESALE 355 (557)
T ss_pred HHHhcccccc
Confidence 5554444433
No 85
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.81 E-value=3.8e-07 Score=100.55 Aligned_cols=233 Identities=15% Similarity=0.123 Sum_probs=164.6
Q ss_pred hhhHhhHHHHHHhcCChhHHHHHHHhcccC----------Ccc-cHHHHHHHHHhcCChhHHHHHHHHHHHc---CCCCC
Q 037236 507 SFTGISLLSLYMHCEKSSSARVLFDEMEDK----------SLV-SWNTMIAGYSQNKLPVEAIVLFRRMFSI---GVQPC 572 (953)
Q Consensus 507 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~~----------~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~ 572 (953)
..+...|..+|...|+++.|..+|+...+. .+. ..+.+...|...+++++|..+|+++... ..-++
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 344555788888888888888888765431 111 2334556788888888888888887642 11122
Q ss_pred hhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC----------CCCHH-H
Q 037236 573 EISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK----------DKDVT-S 641 (953)
Q Consensus 573 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----------~~~~~-~ 641 (953)
... -..+++.|...|.+.|++++|...+++.. .+.+. .
T Consensus 279 h~~-------------------------------va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~ 327 (508)
T KOG1840|consen 279 HPA-------------------------------VAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQ 327 (508)
T ss_pred CHH-------------------------------HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHH
Confidence 211 23345566777888888888777776543 22333 4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc-----CCCCC
Q 037236 642 WNAIIGGHGIHGYGKEAIELFEKMLAL---GHKPD----TFTFVGILMACNHAGLVENGLKYFSQMQKLH-----AVKPK 709 (953)
Q Consensus 642 ~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~P~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p~ 709 (953)
.+.++..+...+++++|..++.+..+. -+.++ ..++..|...|.+.|++++|.++|+++++.. +..+.
T Consensus 328 l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~ 407 (508)
T KOG1840|consen 328 LSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYG 407 (508)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChh
Confidence 566777788899999999998876653 12233 3578899999999999999999999987653 12233
Q ss_pred -hhHHHHHHHHHhhcCCHHHHHHHHHhCC--------CCCC-hhHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 037236 710 -LEHYACVVDMLGRAGKLDDAFKLIIEMP--------EEAD-AGIWSSLLRSCRTYGALKMGEKVAKTLLE 770 (953)
Q Consensus 710 -~~~~~~lv~~l~~~g~~~eA~~~~~~~~--------~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 770 (953)
..+++.|...|.+.++.++|.++|.+.. ..|+ ..++.+|...|...|++|.|++..++++.
T Consensus 408 ~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 408 VGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 5567888889999999998988887643 1344 35899999999999999999999988763
No 86
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.80 E-value=3.6e-05 Score=85.33 Aligned_cols=241 Identities=10% Similarity=0.034 Sum_probs=132.7
Q ss_pred CchhhhHHHH--HHHhcCChhhHHHHhhcCCCCCchhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCC-------CCccc
Q 037236 97 DFIINTRLIT--MYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYPDVLSIFVELLSDTELK-------PDNFT 167 (953)
Q Consensus 97 ~~~~~~~Li~--~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~-------p~~~~ 167 (953)
|+.+..++++ .|.-.|+.+.|-+-.+.+.. -..|..|.+.+.+..+.+-|.-.+-.|....|.+ -+..+
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~IkS--~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~ 802 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS--DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEED 802 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHhh--hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcch
Confidence 3444444544 35566777776555554432 3456667766666666665555554443322211 11122
Q ss_pred HHHHHHHhhcCCChhhHhHHHHHHHHhCCCCChhHHHHHHHHhhccCChHHHHHHhccCCCCC-eecHHHHHHHHHcCCC
Q 037236 168 FPCVIKACGGIADVSFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERN-LVSWNSIICGSSENGF 246 (953)
Q Consensus 168 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~-~~~~~~li~~~~~~g~ 246 (953)
=..+.-.....|-+++|+.++.+-.+ |..|-..|-..|.+++|.++-+.-.+-. -.||..-..-+-..++
T Consensus 803 eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~D 873 (1416)
T KOG3617|consen 803 EAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRD 873 (1416)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhcc
Confidence 22222223456667777777776655 3344455666777777777654432211 1134444444445666
Q ss_pred chHHHHHHHHhhhccCCC-------------------CCChhhHHHHHHhhhcCCCchHHHHHHHHHHHhCCCCCchHHH
Q 037236 247 SCESFDLLIKMMGCEEGF-------------------IPDVATVVTVLPVCAGEGNVDLGILVHGLAVKLGLTRELMVNN 307 (953)
Q Consensus 247 ~~~A~~l~~~m~~~~~g~-------------------~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 307 (953)
.+.|++.|++. ..... ..|..-|.---.-+-..|+.+.|..++..... |-
T Consensus 874 i~~AleyyEK~--~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~f 942 (1416)
T KOG3617|consen 874 IEAALEYYEKA--GVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YF 942 (1416)
T ss_pred HHHHHHHHHhc--CChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hh
Confidence 77777777654 11110 11222233333334456666666666665543 34
Q ss_pred HHHHhhHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHH
Q 037236 308 ALVDMYAKCGFLSEAQILFDKNNNKNVVSWNTIIGAFSMAGDVCGTFDLLRKMQ 361 (953)
Q Consensus 308 ~li~~~~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~ 361 (953)
+++...|-.|..++|-++-++- .|......+.+-|-..|++.+|+.+|.+.+
T Consensus 943 s~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 943 SMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 5666667777777777776542 355667778888888888888888887764
No 87
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.78 E-value=1.5e-06 Score=82.51 Aligned_cols=192 Identities=13% Similarity=0.028 Sum_probs=152.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHh
Q 037236 611 ACSIIDMYAKCGCLEQSRRVFDRLKD---KDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNH 686 (953)
Q Consensus 611 ~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~ 686 (953)
...|.-.|...|+...|..-+++..+ .+..+|..+...|.+.|+.+.|.+.|++.++ +.| +....+....-+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHHHh
Confidence 34466788889999999999998873 3455888888889999999999999999988 577 55678888888888
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHH
Q 037236 687 AGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKV 764 (953)
Q Consensus 687 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~ 764 (953)
.|.+++|...|++...+...---..+|..++-+-.++|+++.|.+.+++... +..+...-.+.......|++-.|...
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHH
Confidence 8899999999998876432222256788888888899999999999987764 23456677777778888899999999
Q ss_pred HHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 765 AKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 765 ~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
+++...--+-......+...+-...|+-+.+.+.-..+..
T Consensus 196 ~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 196 LERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 9888887777788888888888888998888887777665
No 88
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=1.2e-05 Score=85.83 Aligned_cols=241 Identities=13% Similarity=0.079 Sum_probs=149.8
Q ss_pred hHHHHHHhcCChhHHHHHHHhccc--CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccch
Q 037236 512 SLLSLYMHCEKSSSARVLFDEMED--KSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSAL 589 (953)
Q Consensus 512 ~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 589 (953)
.+.++..+..+++.|.+-++...+ .++.-++....+|...|.+.+....-....+.|-.. ..-|
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~-rad~------------- 294 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGREL-RADY------------- 294 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHH-HHHH-------------
Confidence 344555555666666666665443 233334555566777777766665555544333110 0000
Q ss_pred HHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 037236 590 RLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKD--KDVTSWNAIIGGHGIHGYGKEAIELFEKMLA 667 (953)
Q Consensus 590 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 667 (953)
..+. .....+...|.+.++.+.|...|.+... ++... ..+....+++++..+...-
T Consensus 295 -------klIa--------k~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~-------ls~lk~~Ek~~k~~e~~a~ 352 (539)
T KOG0548|consen 295 -------KLIA--------KALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL-------LSKLKEAEKALKEAERKAY 352 (539)
T ss_pred -------HHHH--------HHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH-------HHHHHHHHHHHHHHHHHHh
Confidence 0000 0111145577777888888888887552 22111 2233345666666655554
Q ss_pred CCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCC-hh
Q 037236 668 LGHKPDTFT-FVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE-EAD-AG 743 (953)
Q Consensus 668 ~g~~P~~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~~-~~ 743 (953)
+.|.... ...-.+.+.+.|++..|+..+.++++ ..|+ ...|+.-.-+|.+.|.+.+|++=.+.... .|+ ..
T Consensus 353 --~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIk---r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~k 427 (539)
T KOG0548|consen 353 --INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIK---RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIK 427 (539)
T ss_pred --hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHh---cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHH
Confidence 4564322 33336778889999999999999876 3465 77888888899999999888877665543 333 44
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCch
Q 037236 744 IWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWD 793 (953)
Q Consensus 744 ~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~ 793 (953)
.|.-=+.++....+++.|..++++.++.+|++......+.+.+..+....
T Consensus 428 gy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~ 477 (539)
T KOG0548|consen 428 AYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDE 477 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCC
Confidence 55555556677788999999999999999999888887777777643333
No 89
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=0.00041 Score=75.12 Aligned_cols=118 Identities=13% Similarity=0.052 Sum_probs=67.6
Q ss_pred HHHHHcCCCchHHHHHHHHhhhccCCCCCChhhHHHHHHhhhcCCCchHHHHHHHHHHHhCCCCCchHHHH--HHHhhH-
Q 037236 238 ICGSSENGFSCESFDLLIKMMGCEEGFIPDVATVVTVLPVCAGEGNVDLGILVHGLAVKLGLTRELMVNNA--LVDMYA- 314 (953)
Q Consensus 238 i~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--li~~~~- 314 (953)
+.-+..+|++++|.....++ ..+.+-|...+-.-+-++...+.++.|..+.. +.+. ..+++. +=.+||
T Consensus 19 ln~~~~~~e~e~a~k~~~Ki---l~~~pdd~~a~~cKvValIq~~ky~~ALk~ik---k~~~---~~~~~~~~fEKAYc~ 89 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKI---LSIVPDDEDAIRCKVVALIQLDKYEDALKLIK---KNGA---LLVINSFFFEKAYCE 89 (652)
T ss_pred HHHhccchHHHHHHHHHHHH---HhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHH---hcch---hhhcchhhHHHHHHH
Confidence 44566677788888888777 33334455556666666667777777663322 2221 011111 234444
Q ss_pred -hcCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHhcc
Q 037236 315 -KCGFLSEAQILFDKNNNKNVVSWNTIIGAFSMAGDVCGTFDLLRKMQMKE 364 (953)
Q Consensus 315 -~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 364 (953)
+.+..++|.+.++.....|..+.-.-...+.+.|++++|+.+|+.+.+.+
T Consensus 90 Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~ 140 (652)
T KOG2376|consen 90 YRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNN 140 (652)
T ss_pred HHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 56777777777774444343344444455667777777777777775543
No 90
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.65 E-value=8.2e-07 Score=87.91 Aligned_cols=223 Identities=11% Similarity=0.037 Sum_probs=180.7
Q ss_pred hHhhHHHHHHhcCChhHHHHHHHhccc--CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHH-HHHHhcc
Q 037236 509 TGISLLSLYMHCEKSSSARVLFDEMED--KSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVS-ILSACSQ 585 (953)
Q Consensus 509 ~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~a~~~ 585 (953)
--+.+..+|.+.|.+.+|.+.|+.-.+ +-+.||--|-..|.+-.+++.|+.+|.+-.+. .|-.+||.. .-.....
T Consensus 225 Wk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 345677889999999999999887653 56678888889999999999999999888765 677777754 4446667
Q ss_pred ccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHH
Q 037236 586 LSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELF 662 (953)
Q Consensus 586 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~ 662 (953)
.+..+.+.+++..+.+.... ++....++...|.-.++.+-|...|.++. -.+...|+.+.-+|.-.++++-++.-|
T Consensus 303 m~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHH
Confidence 78889999999888886433 56666677778888899999999999876 467888999999999999999999999
Q ss_pred HHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 037236 663 EKMLALGHKPDT--FTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMP 737 (953)
Q Consensus 663 ~~m~~~g~~P~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~ 737 (953)
++.+..--.|+. ..|..+.......|++.-|.+.|+-... -.|+ .+.++.|.-+-.|.|++++|..+++...
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~---~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT---SDAQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc---cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 999886555643 4588888888899999999999988754 3344 7788888888899999999999998764
No 91
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.65 E-value=4.8e-07 Score=84.11 Aligned_cols=122 Identities=11% Similarity=0.043 Sum_probs=97.5
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 037236 659 IELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMP 737 (953)
Q Consensus 659 ~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~ 737 (953)
..+|++.++ +.|+. +..+..++...|++++|...|+..+. +.|+ ...|..+..++.+.|++++|...+++..
T Consensus 13 ~~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al 85 (144)
T PRK15359 13 EDILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHAL 85 (144)
T ss_pred HHHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 356667666 56654 44567778888888888888888865 5565 7778888888888888888888888775
Q ss_pred C--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 037236 738 E--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYA 787 (953)
Q Consensus 738 ~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 787 (953)
. +.++..|..+..++...|+.++|...+++++++.|+++..+...+++..
T Consensus 86 ~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 86 MLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 4 4467788888888899999999999999999999999999988877654
No 92
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.62 E-value=1.9e-05 Score=88.49 Aligned_cols=278 Identities=15% Similarity=0.069 Sum_probs=139.4
Q ss_pred HHhcCChhHHHHHHHhccc--CCcccH-HHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhc----c--cc
Q 037236 517 YMHCEKSSSARVLFDEMED--KSLVSW-NTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACS----Q--LS 587 (953)
Q Consensus 517 y~~~g~~~~A~~~f~~~~~--~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~----~--~~ 587 (953)
+...|++++|++.++.-.. .|..+| ......+.+.|+.++|..+++.+++. .|+...|-..+..|. . ..
T Consensus 14 l~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhcccccc
Confidence 4556666666666655433 233333 33445566666666666666666665 355555555444443 1 11
Q ss_pred chHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHH-HHHHHhhhcCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHH
Q 037236 588 ALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLE-QSRRVFDRLKDKDV-TSWNAIIGGHGIHGYGKEAIELFEKM 665 (953)
Q Consensus 588 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~-~A~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m 665 (953)
..+.-.++++.+...-...+.. ..+.-.+..-..+. .+...+..+..+.+ .+++.+-..|.......-..+++...
T Consensus 92 ~~~~~~~~y~~l~~~yp~s~~~--~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~ 169 (517)
T PF12569_consen 92 DVEKLLELYDELAEKYPRSDAP--RRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEY 169 (517)
T ss_pred cHHHHHHHHHHHHHhCccccch--hHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHH
Confidence 2344445555444332111111 11100011101111 12222233333333 34444444444444434444444443
Q ss_pred HHC----C---------C-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHH
Q 037236 666 LAL----G---------H-KPDT--FTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDD 728 (953)
Q Consensus 666 ~~~----g---------~-~P~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~e 728 (953)
... | . .|.. .++..+...|.+.|++++|+++.++.++ .+|+ ++.|..-...|-+.|++++
T Consensus 170 ~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G~~~~ 246 (517)
T PF12569_consen 170 VNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAGDLKE 246 (517)
T ss_pred HHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCCCHHH
Confidence 322 1 0 1222 2445555666677777777777776655 4566 6666667777777777777
Q ss_pred HHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcch----------HHHHHHHHHhcCCchHHH
Q 037236 729 AFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAEN----------YVLVSNIYAGSEKWDDVR 796 (953)
Q Consensus 729 A~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~----------~~~l~~~y~~~g~~~~a~ 796 (953)
|.+.++.... ..|-.+-+-....+.+.|+++.|+..+.....-+- ++.. ..--+..|...|++..|+
T Consensus 247 Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~-~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~AL 325 (517)
T PF12569_consen 247 AAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV-DPLSNLNDMQCMWFETECAEAYLRQGDYGLAL 325 (517)
T ss_pred HHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC-CcccCHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 7777766543 23444444444555666777777777666654432 1111 123456777888888887
Q ss_pred HHHHHH
Q 037236 797 MMRQRM 802 (953)
Q Consensus 797 ~~~~~m 802 (953)
+-+..+
T Consensus 326 k~~~~v 331 (517)
T PF12569_consen 326 KRFHAV 331 (517)
T ss_pred HHHHHH
Confidence 755544
No 93
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.61 E-value=1.1e-06 Score=94.33 Aligned_cols=214 Identities=11% Similarity=0.039 Sum_probs=154.7
Q ss_pred cccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHH
Q 037236 585 QLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIEL 661 (953)
Q Consensus 585 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l 661 (953)
+.|++..|.-.++..++.... +...|--|.-.-...++-..|+..+.+.. +.|....-+|.-.|...|.-.+|+..
T Consensus 297 ~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~ 375 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKM 375 (579)
T ss_pred hcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHH
Confidence 456677777777776666543 55666666666666666666777776655 34556666667777777777777777
Q ss_pred HHHHHHCCCCCCHHHHHH--------HHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHH
Q 037236 662 FEKMLALGHKPDTFTFVG--------ILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLI 733 (953)
Q Consensus 662 ~~~m~~~g~~P~~~t~~~--------ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~ 733 (953)
++.-+.. +|-..-... .-....+...+.+..++|-.+....+.++|++.+.+|.-+|--.|.++.|.+.|
T Consensus 376 L~~Wi~~--~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 376 LDKWIRN--KPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred HHHHHHh--CccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 7766552 211000000 001122223344556666666666676678889999999999999999999999
Q ss_pred HhCCC-CC-ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHH
Q 037236 734 IEMPE-EA-DAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQR 801 (953)
Q Consensus 734 ~~~~~-~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 801 (953)
+.+.. +| |..+||-|+.....-.+-++|+.+|.+++++.|.-..+...|+-.|...|-++||.+.+-.
T Consensus 454 ~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 454 EAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 98865 45 7889999999999999999999999999999999999999999999999999999995433
No 94
>PLN02789 farnesyltranstransferase
Probab=98.61 E-value=8.4e-06 Score=86.12 Aligned_cols=203 Identities=14% Similarity=0.120 Sum_probs=143.5
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcC-CH
Q 037236 546 AGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCG-CL 624 (953)
Q Consensus 546 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g-~~ 624 (953)
..+...++.++|+.+..++++. .|+. ..+|+....++.+.| ++
T Consensus 45 a~l~~~e~serAL~lt~~aI~l--nP~~----------------------------------ytaW~~R~~iL~~L~~~l 88 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRL--NPGN----------------------------------YTVWHFRRLCLEALDADL 88 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHH--Cchh----------------------------------HHHHHHHHHHHHHcchhH
Confidence 3445566777788777777764 4442 223333344444555 56
Q ss_pred HHHHHHhhhcC---CCCHHHHHHHHHHHHhcCCh--HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037236 625 EQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYG--KEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFS 698 (953)
Q Consensus 625 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~--~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~ 698 (953)
+++...++++. .++..+|+...-.+.+.|+. ++++.+++++++ ..| |..+|.....++.+.|+++++++.++
T Consensus 89 ~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~ 166 (320)
T PLN02789 89 EEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCH 166 (320)
T ss_pred HHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 78888887765 45666787666556666653 678888889988 567 77888888889999999999999999
Q ss_pred HHHHhcCCCCC-hhHHHHHHHHHhhc---CCH----HHHHHHHHhCC-C-CCChhHHHHHHHHHHhcC----ChhHHHHH
Q 037236 699 QMQKLHAVKPK-LEHYACVVDMLGRA---GKL----DDAFKLIIEMP-E-EADAGIWSSLLRSCRTYG----ALKMGEKV 764 (953)
Q Consensus 699 ~m~~~~~~~p~-~~~~~~lv~~l~~~---g~~----~eA~~~~~~~~-~-~~~~~~~~~ll~~~~~~g----~~~~a~~~ 764 (953)
++++. .|+ ...|+....++.+. |.+ ++++++..++. . +.|...|+.+.+.+..++ +...+...
T Consensus 167 ~~I~~---d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~ 243 (320)
T PLN02789 167 QLLEE---DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSV 243 (320)
T ss_pred HHHHH---CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHH
Confidence 99773 344 45565555555444 323 46777775443 3 457889999999988743 45678888
Q ss_pred HHHHhccCCCCcchHHHHHHHHHhc
Q 037236 765 AKTLLELEPDKAENYVLVSNIYAGS 789 (953)
Q Consensus 765 ~~~~~~l~p~~~~~~~~l~~~y~~~ 789 (953)
+..+++.+|.++.++..|+++|...
T Consensus 244 ~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 244 CLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHhhcccCCcHHHHHHHHHHHHhh
Confidence 9999999999999999999999874
No 95
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.61 E-value=0.00023 Score=77.85 Aligned_cols=396 Identities=13% Similarity=0.100 Sum_probs=209.8
Q ss_pred ccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCcccHHHHhccCCCC---ChhhHHHHHHHHHhcCChHHHHHHH
Q 037236 384 KSELLSLKELHGYSLRHGFDNDELVANAFVVAYAKCGSEISAENVFHGMDSR---TVSSWNALICGYAQNGDHLKALDYF 460 (953)
Q Consensus 384 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~ 460 (953)
.+++..+....+.+++ +++....+.....-.+...|+.++|......-... +.+.|..+.-.+-...++++|++.|
T Consensus 20 ~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred HHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHH
Confidence 4455555555555555 33333333333333445567777777766554433 5578888888888888999999999
Q ss_pred HHhhhCCCCCCcch-HHHHHHhhccccccchhhHHHHHHHHhCCCCchhhHhhHHHHHHhcCChhHHHHHHHhcccCCcc
Q 037236 461 LQMTHSDLEPDLFS-IGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMEDKSLV 539 (953)
Q Consensus 461 ~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~ 539 (953)
+..... .||... +.-+--.-++.++++........+.+.. ...-.
T Consensus 99 ~nAl~~--~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~--------------------------------~~~ra 144 (700)
T KOG1156|consen 99 RNALKI--EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR--------------------------------PSQRA 144 (700)
T ss_pred HHHHhc--CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--------------------------------hhhHH
Confidence 888764 343322 2211111122233332222222222211 12334
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCChhhHHHHHH------HhccccchHHHHHHHHHHHHcCCCCCccHHH
Q 037236 540 SWNTMIAGYSQNKLPVEAIVLFRRMFSIG-VQPCEISIVSILS------ACSQLSALRLGKETHCYALKAILTNDAFVAC 612 (953)
Q Consensus 540 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~------a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 612 (953)
.|...+.++--.|++..|..+.++..+.. -.|+...+..... .....|.++.+.+.+......-++ ....--
T Consensus 145 ~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~D-kla~~e 223 (700)
T KOG1156|consen 145 SWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVD-KLAFEE 223 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHH-HHHHhh
Confidence 56666666666666666666666665543 2344443332221 122344444444443332221110 112223
Q ss_pred HHHHHHHhcCCHHHHHHHhhhcCC--CCHHHHH-HHHHHHHhcCChHH--------------------------------
Q 037236 613 SIIDMYAKCGCLEQSRRVFDRLKD--KDVTSWN-AIIGGHGIHGYGKE-------------------------------- 657 (953)
Q Consensus 613 ~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~-~li~~~~~~g~~~~-------------------------------- 657 (953)
.-.+.+.+.|++++|..++..+.. ||-.-|. .+..++.+--+.-+
T Consensus 224 ~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel 303 (700)
T KOG1156|consen 224 TKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEEL 303 (700)
T ss_pred hHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchh
Confidence 345566667777777777776653 3322222 22223321111112
Q ss_pred ---HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---cC----------CCCC--hhHHHHHHHH
Q 037236 658 ---AIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKL---HA----------VKPK--LEHYACVVDM 719 (953)
Q Consensus 658 ---A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~~----------~~p~--~~~~~~lv~~ 719 (953)
.-+++..+++.|+.| +|..+.+.+-.-...+--.++...+... .| -.|. ..++..++..
T Consensus 304 ~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh 380 (700)
T KOG1156|consen 304 KEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQH 380 (700)
T ss_pred HHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHH
Confidence 223333444444433 2222222222211111111111111110 00 1344 3455677888
Q ss_pred HhhcCCHHHHHHHHHhCCCC-CChh-HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHH
Q 037236 720 LGRAGKLDDAFKLIIEMPEE-ADAG-IWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRM 797 (953)
Q Consensus 720 l~~~g~~~eA~~~~~~~~~~-~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 797 (953)
+-+.|+++.|+..++..... |+.+ .+.+=...+.-.|+++.|-..++.+.++|-.|....-.-++....+++.++|.+
T Consensus 381 ~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~ 460 (700)
T KOG1156|consen 381 YDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEE 460 (700)
T ss_pred HHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHH
Confidence 99999999999999987653 4432 333344556677899999999999999998777766677888889999999999
Q ss_pred HHHHHHHCCCcc-----CCceeEEEe
Q 037236 798 MRQRMKERGLQK-----EAGCSWIEL 818 (953)
Q Consensus 798 ~~~~m~~~~~~~-----~~~~s~i~~ 818 (953)
+..+....|..- +..|.|..+
T Consensus 461 ~~skFTr~~~~~~~~L~~mqcmWf~~ 486 (700)
T KOG1156|consen 461 VLSKFTREGFGAVNNLAEMQCMWFQL 486 (700)
T ss_pred HHHHhhhcccchhhhHHHhhhHHHhH
Confidence 998888776421 235777654
No 96
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.61 E-value=4.1e-05 Score=84.41 Aligned_cols=290 Identities=10% Similarity=-0.028 Sum_probs=171.5
Q ss_pred hhHHHHHHhcCChhHHHHHHHhccc---CCccc---HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChh-hHHH---HH
Q 037236 511 ISLLSLYMHCEKSSSARVLFDEMED---KSLVS---WNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEI-SIVS---IL 580 (953)
Q Consensus 511 ~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~---ll 580 (953)
..+...|...|+.+.+.+.+....+ ++... .......+...|++++|.+++++..+. .|+.. .+.. ..
T Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~~~~~~ 87 (355)
T cd05804 10 AAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKLHLGAF 87 (355)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHhHHHH
Confidence 3344445555666665555544332 12221 122233456778888888888888765 34433 2221 11
Q ss_pred HHhccccchHHHHHHHHHHHHcCCCCC-ccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChH
Q 037236 581 SACSQLSALRLGKETHCYALKAILTND-AFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGK 656 (953)
Q Consensus 581 ~a~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 656 (953)
......+....+.+.... .....|+ ......+...+...|++++|...+++.. +.+...+..+...|...|+++
T Consensus 88 ~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~ 165 (355)
T cd05804 88 GLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFK 165 (355)
T ss_pred HhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHH
Confidence 111223444444444433 1112222 2344456678889999999999999876 445677888888999999999
Q ss_pred HHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHH-H--HHHHHHhhcCCHHHHH
Q 037236 657 EAIELFEKMLALGH-KPDT--FTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHY-A--CVVDMLGRAGKLDDAF 730 (953)
Q Consensus 657 ~A~~l~~~m~~~g~-~P~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-~--~lv~~l~~~g~~~eA~ 730 (953)
+|+..+++...... .|+. ..+..+...+...|++++|..++++........+..... + .+...+...|..+.+.
T Consensus 166 eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~ 245 (355)
T cd05804 166 EGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGD 245 (355)
T ss_pred HHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHH
Confidence 99999999887421 1232 245577888899999999999999875422211221111 1 2333444455333333
Q ss_pred HH---HHhC----CCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccC-C--------CCcchHHHHHHHHHhcCCchH
Q 037236 731 KL---IIEM----PEEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELE-P--------DKAENYVLVSNIYAGSEKWDD 794 (953)
Q Consensus 731 ~~---~~~~----~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~-p--------~~~~~~~~l~~~y~~~g~~~~ 794 (953)
++ .... +.+...........++...|+.+.|...++.+...- + ......+..+.++...|++++
T Consensus 246 ~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~ 325 (355)
T cd05804 246 RWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYAT 325 (355)
T ss_pred HHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHH
Confidence 32 1111 111112222345556677888999998888876532 1 135566788899999999999
Q ss_pred HHHHHHHHHH
Q 037236 795 VRMMRQRMKE 804 (953)
Q Consensus 795 a~~~~~~m~~ 804 (953)
|.+.......
T Consensus 326 A~~~L~~al~ 335 (355)
T cd05804 326 ALELLGPVRD 335 (355)
T ss_pred HHHHHHHHHH
Confidence 9997666554
No 97
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.60 E-value=0.00072 Score=84.86 Aligned_cols=193 Identities=13% Similarity=0.131 Sum_probs=112.5
Q ss_pred HHHHHHHHhcCCHHHHHHHhhhcCC-------C----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCC--CHHH
Q 037236 612 CSIIDMYAKCGCLEQSRRVFDRLKD-------K----DVTSWNAIIGGHGIHGYGKEAIELFEKMLALG--HKP--DTFT 676 (953)
Q Consensus 612 ~~li~~y~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~P--~~~t 676 (953)
..+...+...|++++|...+++... + ....+..+...+...|++++|...+++..... ..| ...+
T Consensus 535 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 614 (903)
T PRK04841 535 LQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQC 614 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHH
Confidence 4455566667777777776655431 1 11233444555666688888887777765521 112 1233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHH-----HHHHHHHhhcCCHHHHHHHHHhCCCC--CCh----hHH
Q 037236 677 FVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHY-----ACVVDMLGRAGKLDDAFKLIIEMPEE--ADA----GIW 745 (953)
Q Consensus 677 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-----~~lv~~l~~~g~~~eA~~~~~~~~~~--~~~----~~~ 745 (953)
+..+.......|+.++|...++.+............+ ......+...|+.++|.+++...... ... ..+
T Consensus 615 ~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~ 694 (903)
T PRK04841 615 LAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQW 694 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHH
Confidence 4445556677888888888777774422111111111 11123445578888888887665431 111 113
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhccC------CCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 746 SSLLRSCRTYGALKMGEKVAKTLLELE------PDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 746 ~~ll~~~~~~g~~~~a~~~~~~~~~l~------p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
..+..++...|+.+.|...++++++.. ++...++..++.+|...|+.++|...+.+..+
T Consensus 695 ~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 695 RNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455556677788888888888887752 12234667788888888888888886655544
No 98
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.59 E-value=0.00081 Score=75.12 Aligned_cols=43 Identities=16% Similarity=0.000 Sum_probs=26.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccch
Q 037236 439 SWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHR 490 (953)
Q Consensus 439 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 490 (953)
....+...+.++|.+..|-+-|.+.-.+ ...++++.+.|+.++
T Consensus 1147 vLeqvae~c~qQG~Yh~AtKKfTQAGdK---------l~AMraLLKSGdt~K 1189 (1416)
T KOG3617|consen 1147 VLEQVAELCLQQGAYHAATKKFTQAGDK---------LSAMRALLKSGDTQK 1189 (1416)
T ss_pred HHHHHHHHHHhccchHHHHHHHhhhhhH---------HHHHHHHHhcCCcce
Confidence 4556677888888888887777664332 234555555555443
No 99
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.59 E-value=3.5e-06 Score=86.68 Aligned_cols=179 Identities=14% Similarity=0.061 Sum_probs=109.2
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHhhhcC--CC-CH---HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH----H
Q 037236 607 DAFVACSIIDMYAKCGCLEQSRRVFDRLK--DK-DV---TSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTF----T 676 (953)
Q Consensus 607 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~-~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~----t 676 (953)
....+..++..|.+.|++++|...|+++. .| +. ..|..+..+|...|++++|+..++++.+ ..|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR--LHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCchHHH
Confidence 34445556666666677777777766554 12 11 3455566666667777777777777666 344221 3
Q ss_pred HHHHHHHHHhc--------CCHHHHHHHHHHHHHhcCCCCChh-HHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhHHHH
Q 037236 677 FVGILMACNHA--------GLVENGLKYFSQMQKLHAVKPKLE-HYACVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSS 747 (953)
Q Consensus 677 ~~~ll~a~~~~--------g~~~~a~~~~~~m~~~~~~~p~~~-~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~~~~~~~ 747 (953)
+..+..++... |+.++|.+.|+.+.+. .|+.. .+..+. +.+....... .....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~----~~~~~~~~~~-----------~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKK----RMDYLRNRLA-----------GKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHH----HHHHHHHHHH-----------HHHHH
Confidence 44444455443 5566666666666553 23311 111111 1111111000 01124
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCC---cchHHHHHHHHHhcCCchHHHHHHHHHHHC
Q 037236 748 LLRSCRTYGALKMGEKVAKTLLELEPDK---AENYVLVSNIYAGSEKWDDVRMMRQRMKER 805 (953)
Q Consensus 748 ll~~~~~~g~~~~a~~~~~~~~~l~p~~---~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 805 (953)
+...+...|+.+.|...++++++..|++ +.++..++.+|...|++++|....+.+..+
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5556788899999999999999997765 478999999999999999999998887654
No 100
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.59 E-value=1.4e-06 Score=90.74 Aligned_cols=156 Identities=12% Similarity=0.089 Sum_probs=94.7
Q ss_pred HHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCC
Q 037236 614 IIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACN----HAGL 689 (953)
Q Consensus 614 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~----~~g~ 689 (953)
...+|...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+ +..|. +...+..++. ..+.
T Consensus 108 ~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~-~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 108 AATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDS-ILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCH-HHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcH-HHHHHHHHHHHHHhCchh
Confidence 345566678888888877765 4555556667778888888888888888876 34443 3333444332 2235
Q ss_pred HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCCh-hHHHHHHH
Q 037236 690 VENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGAL-KMGEKVAK 766 (953)
Q Consensus 690 ~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~-~~a~~~~~ 766 (953)
+.+|..+|+++.+.+ .+++...+.+.-+....|+++||.+++++... +.++.++.+++-.+...|+. +.+.+...
T Consensus 183 ~~~A~y~f~El~~~~--~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSDKF--GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHCCS----SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 778888888875533 35556666777777777777777777665443 22344555555555555554 55666666
Q ss_pred HHhccCCCCc
Q 037236 767 TLLELEPDKA 776 (953)
Q Consensus 767 ~~~~l~p~~~ 776 (953)
++...+|+++
T Consensus 261 qL~~~~p~h~ 270 (290)
T PF04733_consen 261 QLKQSNPNHP 270 (290)
T ss_dssp HCHHHTTTSH
T ss_pred HHHHhCCCCh
Confidence 6666666554
No 101
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=5.1e-05 Score=81.15 Aligned_cols=148 Identities=20% Similarity=0.181 Sum_probs=113.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCh-hHHHHHHHHHhhc
Q 037236 645 IIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKL-EHYACVVDMLGRA 723 (953)
Q Consensus 645 li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~lv~~l~~~ 723 (953)
+..+|.+.++++.|+..|.+.+.....||..+ +....+++....+.. .-+.|.. .-.-.=..-+.+.
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~---a~~~pe~A~e~r~kGne~Fk~ 371 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERK---AYINPEKAEEEREKGNEAFKK 371 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHH---HhhChhHHHHHHHHHHHHHhc
Confidence 44567778899999999999887655554322 233345555544443 2255652 1122226678889
Q ss_pred CCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHH
Q 037236 724 GKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQR 801 (953)
Q Consensus 724 g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 801 (953)
|++.+|...+.++.. +.|+..|.+...++.+.|++..|..-++..++++|+....|..=+-++....+|+.|.+.+.+
T Consensus 372 gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 372 GDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred cCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988764 346788888888889999999999999999999999999999999999999999999998887
Q ss_pred HHH
Q 037236 802 MKE 804 (953)
Q Consensus 802 m~~ 804 (953)
-.+
T Consensus 452 ale 454 (539)
T KOG0548|consen 452 ALE 454 (539)
T ss_pred HHh
Confidence 766
No 102
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.57 E-value=9.2e-05 Score=74.27 Aligned_cols=284 Identities=15% Similarity=0.108 Sum_probs=181.4
Q ss_pred HHHHhcCChhHHHHHHHhcccCCcccHHHHH---HHHHhcCChhHHHHHHHHHHHcCCCCChhhHHH-HHHHhccccchH
Q 037236 515 SLYMHCEKSSSARVLFDEMEDKSLVSWNTMI---AGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVS-ILSACSQLSALR 590 (953)
Q Consensus 515 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~a~~~~~~~~ 590 (953)
..+...|++.+|+.-|....+-|+..|.++. ..|...|+..-|+.-|.+.++. +||-..-.. --....+.|.++
T Consensus 46 k~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Gele 123 (504)
T KOG0624|consen 46 KELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGELE 123 (504)
T ss_pred HHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcccHH
Confidence 3344456666666666666665555554442 3466666666666666666553 454221110 011234556666
Q ss_pred HHHHHHHHHHHcCCCCC--ccHH------------HHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcC
Q 037236 591 LGKETHCYALKAILTND--AFVA------------CSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHG 653 (953)
Q Consensus 591 ~a~~~~~~~~~~~~~~~--~~~~------------~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g 653 (953)
.|..=|..++++..... ..++ ...+..+.-.|+...|+.....+. .-|...+..-..+|...|
T Consensus 124 ~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~ 203 (504)
T KOG0624|consen 124 QAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEG 203 (504)
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcC
Confidence 66666666665433111 0111 112233445688888888887766 337777788888999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChh----HHHHH---HH------HH
Q 037236 654 YGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLE----HYACV---VD------ML 720 (953)
Q Consensus 654 ~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~----~~~~l---v~------~l 720 (953)
++..|+.=++..-+.. .-|..++.-+...+...|+.+.++...++..+ +.||-. +|..| +. ..
T Consensus 204 e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK---ldpdHK~Cf~~YKklkKv~K~les~e~~ 279 (504)
T KOG0624|consen 204 EPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK---LDPDHKLCFPFYKKLKKVVKSLESAEQA 279 (504)
T ss_pred cHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc---cCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988777766631 22556677777788888999888888777755 677722 22221 11 23
Q ss_pred hhcCCHHHHHHHHHhCC-CCCC--hh---HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchH
Q 037236 721 GRAGKLDDAFKLIIEMP-EEAD--AG---IWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDD 794 (953)
Q Consensus 721 ~~~g~~~eA~~~~~~~~-~~~~--~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 794 (953)
.+.+++.++++-.++.. .+|. .+ +...+-..++..|++-+|.+...++++++|+|..++.-.+.+|..-..+++
T Consensus 280 ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~ 359 (504)
T KOG0624|consen 280 IEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDD 359 (504)
T ss_pred HhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHH
Confidence 45677777777666543 2444 12 333344445677899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 037236 795 VRMMRQRMKE 804 (953)
Q Consensus 795 a~~~~~~m~~ 804 (953)
|+.-+++..+
T Consensus 360 AI~dye~A~e 369 (504)
T KOG0624|consen 360 AIHDYEKALE 369 (504)
T ss_pred HHHHHHHHHh
Confidence 9988877765
No 103
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.56 E-value=2.7e-06 Score=88.65 Aligned_cols=149 Identities=15% Similarity=0.112 Sum_probs=114.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCh---hHHHHHHHHHhhc
Q 037236 647 GGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKL---EHYACVVDMLGRA 723 (953)
Q Consensus 647 ~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~---~~~~~lv~~l~~~ 723 (953)
..+...|++++|++++.+- .+.......+..+...+++|.|.+.++.|.+ +..|. ....+.+.+..-.
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD~~l~qLa~awv~l~~g~ 180 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ---IDEDSILTQLAEAWVNLATGG 180 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHhCc
Confidence 4466789999999988642 3556677788899999999999999999954 45552 2223334433334
Q ss_pred CCHHHHHHHHHhCCCC--CChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCc-hHHHHHHH
Q 037236 724 GKLDDAFKLIIEMPEE--ADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKW-DDVRMMRQ 800 (953)
Q Consensus 724 g~~~eA~~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~-~~a~~~~~ 800 (953)
+.+.+|.-+|+++... +++.+++.+..+....|++++|+..++.+++.+|.++.+...++-+....|+. +.+.+...
T Consensus 181 e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 5799999999998653 67778888888889999999999999999999999999999999999999999 55667888
Q ss_pred HHHH
Q 037236 801 RMKE 804 (953)
Q Consensus 801 ~m~~ 804 (953)
.++.
T Consensus 261 qL~~ 264 (290)
T PF04733_consen 261 QLKQ 264 (290)
T ss_dssp HCHH
T ss_pred HHHH
Confidence 7776
No 104
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.56 E-value=2.7e-05 Score=87.28 Aligned_cols=66 Identities=9% Similarity=0.044 Sum_probs=38.8
Q ss_pred HHHHhcCCcccHHHHhccCCCC--Ch-hhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHh
Q 037236 414 VAYAKCGSEISAENVFHGMDSR--TV-SSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILA 481 (953)
Q Consensus 414 ~~y~~~g~~~~A~~~f~~~~~~--~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 481 (953)
..+...|+.++|++.+..-... |. .........+.+.|+.++|..+|..+++.+ |+...|-..+..
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~ 80 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEE 80 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHH
Confidence 4456667777777777654332 32 334455566667777777777777777653 555555444433
No 105
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.49 E-value=0.00016 Score=72.55 Aligned_cols=311 Identities=13% Similarity=0.137 Sum_probs=188.8
Q ss_pred HHHHHHhcCCcccHHHHhccCCCCChhhHHHHH---HHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhcccccc
Q 037236 412 FVVAYAKCGSEISAENVFHGMDSRTVSSWNALI---CGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSL 488 (953)
Q Consensus 412 li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 488 (953)
|...+...|++.+|+.-|....+-|+..|.++. ..|...|+..-|+.=|.+.++ ++||-..-. +
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~AR-i---------- 110 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAAR-I---------- 110 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHH-H----------
Confidence 444555566777777777777666666666654 456667777777776666665 355532110 0
Q ss_pred chhhHHHHHHHHhCCCCchhhHhhHHHHHHhcCChhHHHHHHHhcccCCcc----------------cH--HHHHHHHHh
Q 037236 489 HRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMEDKSLV----------------SW--NTMIAGYSQ 550 (953)
Q Consensus 489 ~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~----------------~~--~~li~~~~~ 550 (953)
+ -...+.|.|.++.|..=|+.+.+.++. .| ...+..+.-
T Consensus 111 -----------Q------------Rg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~ 167 (504)
T KOG0624|consen 111 -----------Q------------RGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASG 167 (504)
T ss_pred -----------H------------hchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhc
Confidence 0 012245566666666666655432221 01 112223333
Q ss_pred cCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHH
Q 037236 551 NKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRV 630 (953)
Q Consensus 551 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 630 (953)
.|+...|++....+++. .| .|...+..-...|...|++..|+.=
T Consensus 168 ~GD~~~ai~~i~~llEi--~~----------------------------------Wda~l~~~Rakc~i~~~e~k~AI~D 211 (504)
T KOG0624|consen 168 SGDCQNAIEMITHLLEI--QP----------------------------------WDASLRQARAKCYIAEGEPKKAIHD 211 (504)
T ss_pred CCchhhHHHHHHHHHhc--Cc----------------------------------chhHHHHHHHHHHHhcCcHHHHHHH
Confidence 45555555555555442 22 2555666666777777887777665
Q ss_pred hhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH----HHH---------HHHHHhcCCHHHHH
Q 037236 631 FDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTF----VGI---------LMACNHAGLVENGL 694 (953)
Q Consensus 631 ~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~----~~l---------l~a~~~~g~~~~a~ 694 (953)
+.... ..+..+.--+-..+-..|+.+.++...++-++ +.||.... -.| .......+.|.++.
T Consensus 212 lk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cl 289 (504)
T KOG0624|consen 212 LKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECL 289 (504)
T ss_pred HHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 55433 44555555566667777888888888888777 67765321 111 11223456677777
Q ss_pred HHHHHHHHhcCCCCC-----hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCC-hhHHHHHHHHHHhcCChhHHHHHHHH
Q 037236 695 KYFSQMQKLHAVKPK-----LEHYACVVDMLGRAGKLDDAFKLIIEMPE-EAD-AGIWSSLLRSCRTYGALKMGEKVAKT 767 (953)
Q Consensus 695 ~~~~~m~~~~~~~p~-----~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~ 767 (953)
+-.+...+ ..|. ...+..+-.++...|++.||+....+... .|| +.++---..+|.....++.|+.-+++
T Consensus 290 e~ge~vlk---~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~ 366 (504)
T KOG0624|consen 290 EAGEKVLK---NEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEK 366 (504)
T ss_pred HHHHHHHh---cCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 77666654 3444 22334455667788999999999887764 454 77888888899888999999999999
Q ss_pred HhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCcc
Q 037236 768 LLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKERGLQK 809 (953)
Q Consensus 768 ~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~ 809 (953)
+.+.+|+|..+-.-+ +.|.++.+...++..-|
T Consensus 367 A~e~n~sn~~~reGl----------e~Akrlkkqs~kRDYYK 398 (504)
T KOG0624|consen 367 ALELNESNTRAREGL----------ERAKRLKKQSGKRDYYK 398 (504)
T ss_pred HHhcCcccHHHHHHH----------HHHHHHHHHhccchHHH
Confidence 999999888654433 44555555444444333
No 106
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.45 E-value=1e-05 Score=79.64 Aligned_cols=152 Identities=13% Similarity=0.150 Sum_probs=99.5
Q ss_pred HHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 037236 615 IDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENG 693 (953)
Q Consensus 615 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a 693 (953)
+-.|.+.|+++........+..+. ..+...++.++++..+++.++ ..| |...|..+...|...|++++|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 456777777776654443322211 012235666777777777777 355 666777777888888888888
Q ss_pred HHHHHHHHHhcCCCCC-hhHHHHHHHHH-hhcCC--HHHHHHHHHhCCC-CC-ChhHHHHHHHHHHhcCChhHHHHHHHH
Q 037236 694 LKYFSQMQKLHAVKPK-LEHYACVVDML-GRAGK--LDDAFKLIIEMPE-EA-DAGIWSSLLRSCRTYGALKMGEKVAKT 767 (953)
Q Consensus 694 ~~~~~~m~~~~~~~p~-~~~~~~lv~~l-~~~g~--~~eA~~~~~~~~~-~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 767 (953)
...|++..+ +.|+ ...+..+..++ .+.|+ .++|.+++++... .| +..++..+...+...|+++.|...+++
T Consensus 93 ~~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 93 LLAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888887765 5555 66666666653 56666 4777777776654 23 556677777777777777777777777
Q ss_pred HhccCCCCcchH
Q 037236 768 LLELEPDKAENY 779 (953)
Q Consensus 768 ~~~l~p~~~~~~ 779 (953)
+++++|.+..-+
T Consensus 170 aL~l~~~~~~r~ 181 (198)
T PRK10370 170 VLDLNSPRVNRT 181 (198)
T ss_pred HHhhCCCCccHH
Confidence 777777665544
No 107
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.44 E-value=9.2e-06 Score=79.93 Aligned_cols=145 Identities=11% Similarity=0.143 Sum_probs=115.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcC
Q 037236 646 IGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAG 724 (953)
Q Consensus 646 i~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g 724 (953)
+..|...|+++......+++.. |. . .+...++.+++...++...+ ..|+ ...|..|...|...|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~---~~P~~~~~w~~Lg~~~~~~g 87 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIR---ANPQNSEQWALLGEYYLWRN 87 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCC
Confidence 4568899998887554433222 21 0 12236677888888877765 4565 889999999999999
Q ss_pred CHHHHHHHHHhCCC--CCChhHHHHHHHHH-HhcCC--hhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHH
Q 037236 725 KLDDAFKLIIEMPE--EADAGIWSSLLRSC-RTYGA--LKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMR 799 (953)
Q Consensus 725 ~~~eA~~~~~~~~~--~~~~~~~~~ll~~~-~~~g~--~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 799 (953)
++++|.+.+++... +.++.++..+..+. ...|+ .+.|..+++++++++|+++.++..|+..+...|++++|...+
T Consensus 88 ~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 88 DYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999998754 44678888888874 67776 599999999999999999999999999999999999999999
Q ss_pred HHHHHC
Q 037236 800 QRMKER 805 (953)
Q Consensus 800 ~~m~~~ 805 (953)
+++.+.
T Consensus 168 ~~aL~l 173 (198)
T PRK10370 168 QKVLDL 173 (198)
T ss_pred HHHHhh
Confidence 998764
No 108
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.43 E-value=5.8e-06 Score=91.11 Aligned_cols=218 Identities=14% Similarity=0.107 Sum_probs=136.3
Q ss_pred CCCCchhhHhhHHHHHHhcCChhHHHHHHHhcccCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 037236 502 GLEGDSFTGISLLSLYMHCEKSSSARVLFDEMEDKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILS 581 (953)
Q Consensus 502 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 581 (953)
++.|-......+...+.+.|-...|..+|+++. .|.-.|.+|...|+..+|..+..+-.+ -+||+.-|..+.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 345556666778899999999999999999874 577889999999999999999888877 3777777777777
Q ss_pred HhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHH
Q 037236 582 ACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEA 658 (953)
Q Consensus 582 a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A 658 (953)
..-+..-++.|.++..+.... .-..+.....+.++++++.+.|+.-. .--..+|-....+..+.++++.|
T Consensus 466 v~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 666666666666665544221 11111111223466666666666433 22344566666666666666666
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 037236 659 IELFEKMLALGHKPD-TFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMP 737 (953)
Q Consensus 659 ~~l~~~m~~~g~~P~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~ 737 (953)
.+.|..-.. ..|| ...|+.+-.+|.+.|+-.+|...+.+..+ ..- -+...|-...-...+.|.+++|++.+.++.
T Consensus 539 v~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK-cn~-~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 539 VKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK-CNY-QHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh-cCC-CCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 666666665 4563 34466666666666666666666666644 221 112223333334455666666666665543
No 109
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.43 E-value=5.2e-06 Score=77.21 Aligned_cols=105 Identities=10% Similarity=-0.077 Sum_probs=91.2
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 037236 695 KYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELE 772 (953)
Q Consensus 695 ~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~ 772 (953)
.+|++.++ +.|+ ++..+...+...|++++|.+.|+.... +.+...|..+..++...|+++.|...++++++++
T Consensus 14 ~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 45555544 5565 456678899999999999999998754 4578899999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 773 PDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 773 p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
|+++.++..++.+|...|++++|...++...+
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK 120 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999998877755
No 110
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.43 E-value=3.7e-06 Score=76.44 Aligned_cols=122 Identities=11% Similarity=0.041 Sum_probs=99.9
Q ss_pred CCC-CC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHH
Q 037236 705 AVK-PK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYV 780 (953)
Q Consensus 705 ~~~-p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~ 780 (953)
++. ++ .+..-.+...+...|++++|.++|+-... +-+..-|-.|...|+..|+++.|..++.++..++|+||.++.
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~ 107 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW 107 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 344 43 56666677788899999999999987654 457789999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHCCCccCCceeEEEeCCEEEEEeeCCCCCccHHHHHHHHHHHHHHH
Q 037236 781 LVSNIYAGSEKWDDVRMMRQRMKERGLQKEAGCSWIELGGNIHSFVVGDNMHPEWEEIRGMWGRLEEQI 849 (953)
Q Consensus 781 ~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~~~~ 849 (953)
.++..|...|+.+.|.+.++..... ++ .+|+..+|.++-+.....+
T Consensus 108 ~ag~c~L~lG~~~~A~~aF~~Ai~~---------------------~~--~~~~~~~l~~~A~~~L~~l 153 (157)
T PRK15363 108 AAAECYLACDNVCYAIKALKAVVRI---------------------CG--EVSEHQILRQRAEKMLQQL 153 (157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH---------------------hc--cChhHHHHHHHHHHHHHHh
Confidence 9999999999999999988766542 11 4677777777666655544
No 111
>PF12854 PPR_1: PPR repeat
Probab=98.41 E-value=2.8e-07 Score=60.69 Aligned_cols=33 Identities=39% Similarity=0.489 Sum_probs=27.7
Q ss_pred CCCCChhHHHHHHHHhhccCChHHHHHHhccCC
Q 037236 195 GLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP 227 (953)
Q Consensus 195 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~ 227 (953)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 678888888888888888888888888888874
No 112
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.40 E-value=9e-05 Score=72.86 Aligned_cols=412 Identities=12% Similarity=0.048 Sum_probs=207.7
Q ss_pred CCchhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCcccHHHHhccCCCC--ChhhHHH-HH
Q 037236 368 KPNEVTVLNVLTSCSEKSELLSLKELHGYSLRHGFDNDELVANAFVVAYAKCGSEISAENVFHGMDSR--TVSSWNA-LI 444 (953)
Q Consensus 368 ~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~--~~~~~~~-li 444 (953)
..-..-+.+++..+.+...+..+.+++..-.+.. +.+....+.|..+|-...++..|-..++++... ...-|.. -.
T Consensus 7 ~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~A 85 (459)
T KOG4340|consen 7 QIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQA 85 (459)
T ss_pred cCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH
Confidence 3333446666766777777777777776655543 124455666677777778888887777776542 2222221 23
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHh--hccccccchhhHHHHHHHHhCCCCchhhHhhHHHHHHhcCC
Q 037236 445 CGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILA--CTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEK 522 (953)
Q Consensus 445 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~--~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~ 522 (953)
..+.+.+.+..|+.+...|.+. |+...-..-+.+ .-..+++..++.+..+.-. +.+..+.+...-...+.|+
T Consensus 86 QSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~---en~Ad~~in~gCllykegq 159 (459)
T KOG4340|consen 86 QSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS---ENEADGQINLGCLLYKEGQ 159 (459)
T ss_pred HHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccC---CCccchhccchheeecccc
Confidence 4556677788888887777652 211111111111 1123444444444433321 1123333333344456666
Q ss_pred hhHHHHHHHhccc----CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhh-HHHHHHHhccccchHHHHHHHH
Q 037236 523 SSSARVLFDEMED----KSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEIS-IVSILSACSQLSALRLGKETHC 597 (953)
Q Consensus 523 ~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~a~~~~~ 597 (953)
.+.|.+-|+...+ ...+.||.-+ +..+.|+++.|++...++.+.|++-.+.. ....... .....+.....+|.
T Consensus 160 yEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~teg-iDvrsvgNt~~lh~ 237 (459)
T KOG4340|consen 160 YEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEG-IDVRSVGNTLVLHQ 237 (459)
T ss_pred HHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceecc-CchhcccchHHHHH
Confidence 6666666665543 2334454433 33445666666666666666665421110 0000000 00000000000010
Q ss_pred HHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCC-----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 037236 598 YALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKD-----KDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP 672 (953)
Q Consensus 598 ~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P 672 (953)
.. -+..+|.-...+.+.|+.+.|.+.+..|++ -|++|...+.-.- ..|++.+..+-+.-++. +.|
T Consensus 238 Sa-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~--~nP 307 (459)
T KOG4340|consen 238 SA-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQ--QNP 307 (459)
T ss_pred HH-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHh--cCC
Confidence 00 011223334456788999999999999984 3778776655332 23445555555555555 456
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-CCChhHHHHHHHHHhh-cCCHHHHHHHHHhCCCCCChhHHHHHH
Q 037236 673 -DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAV-KPKLEHYACVVDMLGR-AGKLDDAFKLIIEMPEEADAGIWSSLL 749 (953)
Q Consensus 673 -~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~-~p~~~~~~~lv~~l~~-~g~~~eA~~~~~~~~~~~~~~~~~~ll 749 (953)
-..||..++-.|++..-++-|..++.+--. .-. -.+...|+ |++.+.- .-..++|++-++.+...-....-..-+
T Consensus 308 fP~ETFANlLllyCKNeyf~lAADvLAEn~~-lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi 385 (459)
T KOG4340|consen 308 FPPETFANLLLLYCKNEYFDLAADVLAENAH-LTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAI 385 (459)
T ss_pred CChHHHHHHHHHHhhhHHHhHHHHHHhhCcc-hhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999888887643210 000 01112222 3444443 345666666554432100000000001
Q ss_pred HH-HHhcCChh----HHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 037236 750 RS-CRTYGALK----MGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMK 803 (953)
Q Consensus 750 ~~-~~~~g~~~----~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 803 (953)
.. -.++.+-+ .+..-++..+++- -......+++|....++.-+.+++..-.
T Consensus 386 ~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sv 441 (459)
T KOG4340|consen 386 QVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSV 441 (459)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHH
Confidence 11 01122211 2233344444432 1234566788888999988888766443
No 113
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.40 E-value=0.00024 Score=78.37 Aligned_cols=264 Identities=14% Similarity=0.061 Sum_probs=171.4
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCChhhHHHH-HHHhccccchHHHHHHHHHHHHcCCCCCccHHH---H
Q 037236 539 VSWNTMIAGYSQNKLPVEAIVLFRRMFSIGV-QPCEISIVSI-LSACSQLSALRLGKETHCYALKAILTNDAFVAC---S 613 (953)
Q Consensus 539 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~l-l~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~ 613 (953)
..|..+...+...|+.+++...+.+..+... .++......+ ...+...|+.+.+..++..+.+.... +...+. .
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~~~~ 85 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKLHLG 85 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHhHH
Confidence 4566677777778888888777776655321 2232222222 22345678999999999988876433 333333 2
Q ss_pred HHHHHHhcCCHHHHHHHhhhcCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 037236 614 IIDMYAKCGCLEQSRRVFDRLKD--K-DVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGL 689 (953)
Q Consensus 614 li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~ 689 (953)
+.......|..+.+.+.+....+ | ....+..+...+...|++++|+..+++..+ ..| +...+..+..++...|+
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~--~~p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALE--LNPDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCcHHHHHHHHHHHHcCC
Confidence 22222335666677777665332 2 334455566788999999999999999999 466 45677888889999999
Q ss_pred HHHHHHHHHHHHHhcCCCCCh--hHHHHHHHHHhhcCCHHHHHHHHHhCCC-CC--ChhHHH----HHHHHHHhcCChhH
Q 037236 690 VENGLKYFSQMQKLHAVKPKL--EHYACVVDMLGRAGKLDDAFKLIIEMPE-EA--DAGIWS----SLLRSCRTYGALKM 760 (953)
Q Consensus 690 ~~~a~~~~~~m~~~~~~~p~~--~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~--~~~~~~----~ll~~~~~~g~~~~ 760 (953)
+++|..+++...+.....|+. ..|..+...+...|++++|.+.+++... .| ...... .++.-+...|..+.
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 999999999887643333342 3456788999999999999999998642 23 212111 33444555665555
Q ss_pred HHHH---HHHHhccCCC--CcchHHHHHHHHHhcCCchHHHHHHHHHHHC
Q 037236 761 GEKV---AKTLLELEPD--KAENYVLVSNIYAGSEKWDDVRMMRQRMKER 805 (953)
Q Consensus 761 a~~~---~~~~~~l~p~--~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 805 (953)
+.+. ......-.|. ....-...+..+...|++++|.++.+.++..
T Consensus 244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~ 293 (355)
T cd05804 244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGR 293 (355)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 5444 2222111122 1222246777888999999999999888663
No 114
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.38 E-value=1.2e-05 Score=86.42 Aligned_cols=239 Identities=13% Similarity=0.172 Sum_probs=147.4
Q ss_pred HHhcCChhHHHHHHHhcccC---CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChh-hHHHHHHHhccccchHHH
Q 037236 517 YMHCEKSSSARVLFDEMEDK---SLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEI-SIVSILSACSQLSALRLG 592 (953)
Q Consensus 517 y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a 592 (953)
+.+.|++.+|.-.|+...+. +...|--|....+.+++-..|+..+++.++. .|+.. .+..|--.+...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLEL--DPTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCccHHHHHHHHHHHhhhhhHHHH
Confidence 45667777777777776554 3457777777777888777788777777764 45433 334444455666666666
Q ss_pred HHHHHHHHHcCCC-----C---CccHHHHHHHHHHhcCCHHHHHHHhhhcC-----CCCHHHHHHHHHHHHhcCChHHHH
Q 037236 593 KETHCYALKAILT-----N---DAFVACSIIDMYAKCGCLEQSRRVFDRLK-----DKDVTSWNAIIGGHGIHGYGKEAI 659 (953)
Q Consensus 593 ~~~~~~~~~~~~~-----~---~~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~ 659 (953)
...++..++..+. + +...-+. ..+.....+.+..++|-++. ..|+.....|.-.|--.|++++|+
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 6665544332211 0 0000000 00001111233344444432 246666677777777788888888
Q ss_pred HHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 037236 660 ELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMP 737 (953)
Q Consensus 660 ~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~ 737 (953)
..|+.++. ++| |...|+-|..++....+.++|+..|.++++ ++|+ +.....|.-.|...|.++||.+.|-+..
T Consensus 451 Dcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq---LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 451 DCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ---LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh---cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 88888877 677 667788888888888888888888887765 7777 6666667777777888887776653321
Q ss_pred C------------CCChhHHHHHHHHHHhcCChhHHHHH
Q 037236 738 E------------EADAGIWSSLLRSCRTYGALKMGEKV 764 (953)
Q Consensus 738 ~------------~~~~~~~~~ll~~~~~~g~~~~a~~~ 764 (953)
. .++..+|.+|=.+....++.|.+..+
T Consensus 526 ~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 526 SMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 1 12346888888777777777655444
No 115
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.34 E-value=0.0048 Score=66.34 Aligned_cols=176 Identities=14% Similarity=0.115 Sum_probs=111.5
Q ss_pred hhHHHHHHHHHHHc-CCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCC-CccHHHHHHHHHHhcCCHHHHHHHh
Q 037236 554 PVEAIVLFRRMFSI-GVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTN-DAFVACSIIDMYAKCGCLEQSRRVF 631 (953)
Q Consensus 554 ~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~y~~~g~~~~A~~~~ 631 (953)
.+...+.+++.... ...| ..+|...++..-+..-++.|+.+|..+.+.+..+ +++++++++.-|+ .++.+-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 44555556555543 2333 3556667777777777777777777777766655 7777777777666 46677777777
Q ss_pred hhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC-
Q 037236 632 DRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDT--FTFVGILMACNHAGLVENGLKYFSQMQKLHA- 705 (953)
Q Consensus 632 ~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~- 705 (953)
+--. ..++.--+..+.-+...|+-..|..+|++.+..++.||. ..|..+|.-=+.-|++.-+.++-+++...+.
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~ 504 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPA 504 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcch
Confidence 7543 223333445566666677777777777777776555543 5677777777777777777777776655554
Q ss_pred -CCCChhHHHHHHHHHhhcCCHHHHHH
Q 037236 706 -VKPKLEHYACVVDMLGRAGKLDDAFK 731 (953)
Q Consensus 706 -~~p~~~~~~~lv~~l~~~g~~~eA~~ 731 (953)
..|...+-..+++.|+=.++...-..
T Consensus 505 ~qe~~~~~~~~~v~RY~~~d~~~c~~~ 531 (656)
T KOG1914|consen 505 DQEYEGNETALFVDRYGILDLYPCSLD 531 (656)
T ss_pred hhcCCCChHHHHHHHHhhcccccccHH
Confidence 44444555556666666665444333
No 116
>PLN02789 farnesyltranstransferase
Probab=98.31 E-value=5.5e-05 Score=80.02 Aligned_cols=182 Identities=11% Similarity=0.110 Sum_probs=139.1
Q ss_pred HHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 037236 615 IDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHG-YGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGL 689 (953)
Q Consensus 615 i~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~ 689 (953)
-..+.+.++.++|..+.+++. +.+..+|+.....+...| ++++++..++++++. .| +..+|......+.+.|.
T Consensus 44 ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l~~l~~ 121 (320)
T PLN02789 44 RAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLAEKLGP 121 (320)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHHHHcCc
Confidence 334555678889999988876 345667887777777777 679999999999984 56 55667766666667776
Q ss_pred H--HHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhc---CCh---
Q 037236 690 V--ENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTY---GAL--- 758 (953)
Q Consensus 690 ~--~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~---g~~--- 758 (953)
. +++..+++.+++ +.|. ...|+....++.+.|++++|++.++++.. ..|..+|+......... |..
T Consensus 122 ~~~~~el~~~~kal~---~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~ 198 (320)
T PLN02789 122 DAANKELEFTRKILS---LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAM 198 (320)
T ss_pred hhhHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccccccc
Confidence 3 678888888876 5665 67788888889999999999999999864 45788999888777654 222
Q ss_pred -hHHHHHHHHHhccCCCCcchHHHHHHHHHhc----CCchHHHHHHHH
Q 037236 759 -KMGEKVAKTLLELEPDKAENYVLVSNIYAGS----EKWDDVRMMRQR 801 (953)
Q Consensus 759 -~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~----g~~~~a~~~~~~ 801 (953)
+......+++++++|+|.+++..++.+|... ++..+|......
T Consensus 199 ~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~ 246 (320)
T PLN02789 199 RDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLE 246 (320)
T ss_pred HHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHH
Confidence 4677778899999999999999999999883 344556555443
No 117
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.30 E-value=8.2e-05 Score=87.63 Aligned_cols=197 Identities=14% Similarity=0.169 Sum_probs=166.4
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHhhhcCC--------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 037236 607 DAFVACSIIDMYAKCGCLEQSRRVFDRLKD--------KDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFV 678 (953)
Q Consensus 607 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~ 678 (953)
+...|-..+......+++++|++++++... .-...|.++++.-...|.-+...++|+++.+. --....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 556777778888889999999999998762 24568999999999999889999999999883 22345588
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CC---ChhHHHHHHHHHHh
Q 037236 679 GILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPE-EA---DAGIWSSLLRSCRT 754 (953)
Q Consensus 679 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~---~~~~~~~ll~~~~~ 754 (953)
.|+..|...+.+++|.++++.|.++++ -....|...++.+.+...-++|.++++++.. -| -.....-.+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 999999999999999999999999887 4467899999999999999999999987653 23 34455555666688
Q ss_pred cCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCC
Q 037236 755 YGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKERGL 807 (953)
Q Consensus 755 ~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 807 (953)
+||.|.|+.+++-++.-.|...-.|..+.+.-.+.|..+.++.+++..-..++
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999998877655
No 118
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.30 E-value=4.1e-05 Score=89.24 Aligned_cols=164 Identities=11% Similarity=0.075 Sum_probs=121.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhhhcC------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 037236 610 VACSIIDMYAKCGCLEQSRRVFDRLK------DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPD-TFTFVGILM 682 (953)
Q Consensus 610 ~~~~li~~y~~~g~~~~A~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~-~~t~~~ll~ 682 (953)
+...+-....+.|.+..+.+-+-+.. ..++..+-.|.....+.|+.++|+.+++...+ +.|| ...+..++.
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~ 128 (694)
T PRK15179 51 LLQQARQVLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLR 128 (694)
T ss_pred HHHHHHHHHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHH
Confidence 33334444445555554444433332 24577777888888888999999999998888 6885 455777888
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCC-hhHHHHHHHHHHhcCChh
Q 037236 683 ACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE-EAD-AGIWSSLLRSCRTYGALK 759 (953)
Q Consensus 683 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~~-~~~~~~ll~~~~~~g~~~ 759 (953)
++.+.+++++|...+++... ..|+ ..+...+..++.+.|++++|.++|++... .|+ +.+|-++..++...|+.+
T Consensus 129 ~L~~~~~~eeA~~~~~~~l~---~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~ 205 (694)
T PRK15179 129 GVKRQQGIEAGRAEIELYFS---GGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALW 205 (694)
T ss_pred HHHHhccHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Confidence 88889999999988888765 5676 67777888888889999999999888764 343 678888888888889999
Q ss_pred HHHHHHHHHhccCCCCcch
Q 037236 760 MGEKVAKTLLELEPDKAEN 778 (953)
Q Consensus 760 ~a~~~~~~~~~l~p~~~~~ 778 (953)
.|..+++++++...+-...
T Consensus 206 ~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 206 RARDVLQAGLDAIGDGARK 224 (694)
T ss_pred HHHHHHHHHHHhhCcchHH
Confidence 9999999988876544444
No 119
>PF12854 PPR_1: PPR repeat
Probab=98.29 E-value=7.7e-07 Score=58.62 Aligned_cols=33 Identities=36% Similarity=0.560 Sum_probs=24.3
Q ss_pred CCCCCchHHHHHHHhhHhcCChhHHHHHHhcCC
Q 037236 298 GLTRELMVNNALVDMYAKCGFLSEAQILFDKNN 330 (953)
Q Consensus 298 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~ 330 (953)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 567777777777777777777777777777764
No 120
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.28 E-value=5.7e-05 Score=73.80 Aligned_cols=147 Identities=19% Similarity=0.134 Sum_probs=68.4
Q ss_pred HHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHH
Q 037236 616 DMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVE 691 (953)
Q Consensus 616 ~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~ 691 (953)
..|--.|+-+.+..+..... ..|....+..+....+.|++.+|+..|++... ..| |..+|+.+.-+|.+.|+++
T Consensus 74 ~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~Gr~~ 151 (257)
T COG5010 74 TALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLGRFD 151 (257)
T ss_pred HHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHccChh
Confidence 33333444444444444322 22333444455555555555555555555554 233 4455555555555555555
Q ss_pred HHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-C-CChhHHHHHHHHHHhcCChhHHHHHHHH
Q 037236 692 NGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE-E-ADAGIWSSLLRSCRTYGALKMGEKVAKT 767 (953)
Q Consensus 692 ~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 767 (953)
+|..-|.+..+ +.|+ +..++.|.-.|.-.|+++.|..++.+... . .|..+-.+|.-+....|+++.|+.+..+
T Consensus 152 ~Ar~ay~qAl~---L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 152 EARRAYRQALE---LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHHHHHH---hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 55555555544 2222 23344444445555555555555444322 1 2344444444444555555555444433
No 121
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.23 E-value=0.00022 Score=75.81 Aligned_cols=146 Identities=14% Similarity=0.145 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHH
Q 037236 639 VTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPD-TFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACV 716 (953)
Q Consensus 639 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l 716 (953)
...+-...-.+...|++++|+..++.++.. .|| ..-.......+...++.++|.+.++.++. ..|+ ....-.+
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~ 380 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNL 380 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHH
Confidence 334444445566778899999999998884 674 44455566778899999999999998876 5666 4556667
Q ss_pred HHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchH
Q 037236 717 VDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDD 794 (953)
Q Consensus 717 v~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 794 (953)
..+|.+.|+..+|...++.... +.|+..|..|..+|...|+..++..+ .+..|+-.|+|++
T Consensus 381 a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~ 443 (484)
T COG4783 381 AQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQ 443 (484)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHH
Confidence 8889999999999999887764 45788999999999999987777665 4557888999999
Q ss_pred HHHHHHHHHHCC
Q 037236 795 VRMMRQRMKERG 806 (953)
Q Consensus 795 a~~~~~~m~~~~ 806 (953)
|....+..+++.
T Consensus 444 A~~~l~~A~~~~ 455 (484)
T COG4783 444 AIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHHhc
Confidence 999887777653
No 122
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.23 E-value=1.8e-05 Score=73.18 Aligned_cols=99 Identities=16% Similarity=0.230 Sum_probs=71.9
Q ss_pred CCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHH
Q 037236 706 VKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLV 782 (953)
Q Consensus 706 ~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l 782 (953)
..|+ ......++..+...|++++|.+.++.... +.++..|..+...+...|+++.|...++++++++|+++..+..+
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 3443 34455566666667777777776666532 33566777777777778888888888888888888888888888
Q ss_pred HHHHHhcCCchHHHHHHHHHHH
Q 037236 783 SNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 783 ~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
+.+|...|++++|...++...+
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 8888888888888887776655
No 123
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.21 E-value=7.7e-05 Score=87.01 Aligned_cols=142 Identities=11% Similarity=0.080 Sum_probs=116.5
Q ss_pred CCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHH
Q 037236 604 LTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPD-TFTFVG 679 (953)
Q Consensus 604 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~-~~t~~~ 679 (953)
...++..+-.|.......|.+++|..+++... +.+...+..++..+.+.+++++|+..+++... ..|+ ......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHH
Confidence 34467788888999999999999999999887 34566788899999999999999999999999 5785 455777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHH
Q 037236 680 ILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLR 750 (953)
Q Consensus 680 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~ 750 (953)
+..++.+.|++++|..+|+++.. -.|+ ...+..+...+-+.|+.++|...|++... .|.+.-++.++.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~---~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 230 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSR---QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV 230 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH
Confidence 77888899999999999999975 3455 77888899999999999999999998754 355555555443
No 124
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.20 E-value=0.011 Score=74.28 Aligned_cols=365 Identities=10% Similarity=-0.047 Sum_probs=184.6
Q ss_pred HHHhhccCChHHHHHHhccCCCCCeec--HHHHHHHHHcCCCchHHHHHHHHhhhccCCCCCChhhHHHHHHhhhcCCCc
Q 037236 207 IAMYGKCAFVEEMVKLFEVMPERNLVS--WNSIICGSSENGFSCESFDLLIKMMGCEEGFIPDVATVVTVLPVCAGEGNV 284 (953)
Q Consensus 207 i~~~~~~g~~~~A~~~f~~m~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~ 284 (953)
...|...|++.+|..........+... .......+...|++..+...+..+ .......+..........+...|++
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~l--p~~~~~~~~~l~~~~a~~~~~~g~~ 425 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNAL--PWEVLLENPRLVLLQAWLAQSQHRY 425 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhC--CHHHHhcCcchHHHHHHHHHHCCCH
Confidence 344566677777776665555432211 111122345577787777777766 2221222222222333444567888
Q ss_pred hHHHHHHHHHHHhCCC------CC--chHHHHHHHhhHhcCChhHHHHHHhcCC----CCCc----ccHHHHHHHHHcCC
Q 037236 285 DLGILVHGLAVKLGLT------RE--LMVNNALVDMYAKCGFLSEAQILFDKNN----NKNV----VSWNTIIGAFSMAG 348 (953)
Q Consensus 285 ~~a~~~~~~~~~~g~~------~~--~~~~~~li~~~~~~g~~~~A~~~f~~~~----~~d~----~~~~~li~~~~~~g 348 (953)
+++...+....+.--. +. ......+...+...|++++|...+++.. ..+. ..++.+...+...|
T Consensus 426 ~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G 505 (903)
T PRK04841 426 SEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKG 505 (903)
T ss_pred HHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcC
Confidence 8888888776543111 11 1122223345567889999888887532 2221 23455666677889
Q ss_pred ChhHHHHHHHHHHhccCCC-CCc--hhhHHHHHHHhccccchHHHHHHHHHHHHc----CCCC---chhHHHHHHHHHHh
Q 037236 349 DVCGTFDLLRKMQMKEEEM-KPN--EVTVLNVLTSCSEKSELLSLKELHGYSLRH----GFDN---DELVANAFVVAYAK 418 (953)
Q Consensus 349 ~~~~A~~l~~~m~~~g~~~-~p~--~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~----g~~~---~~~~~~~li~~y~~ 418 (953)
++++|...+.+........ .+. ..++..+-..+...|+++.|...+...+.. +... ....+..+...+..
T Consensus 506 ~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 585 (903)
T PRK04841 506 ELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWE 585 (903)
T ss_pred CHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 9999998888876432101 111 123333444566678888887776665442 2111 12223344445555
Q ss_pred cCCcccHHHHhccCCC------C--ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC-cchHHHHHHhhccccccc
Q 037236 419 CGSEISAENVFHGMDS------R--TVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPD-LFSIGSLILACTHLKSLH 489 (953)
Q Consensus 419 ~g~~~~A~~~f~~~~~------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~ 489 (953)
.|++++|...+.+... + ....+..+...+...|++++|.+.+.+.....-... ...+.
T Consensus 586 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~------------- 652 (903)
T PRK04841 586 WARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI------------- 652 (903)
T ss_pred hcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh-------------
Confidence 6777666666554321 0 112233344455566666666666665543110000 00000
Q ss_pred hhhHHHHHHHHhCCCCchhhHhhHHHHHHhcCChhHHHHHHHhcccCCcc-------cHHHHHHHHHhcCChhHHHHHHH
Q 037236 490 RGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMEDKSLV-------SWNTMIAGYSQNKLPVEAIVLFR 562 (953)
Q Consensus 490 ~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~-------~~~~li~~~~~~g~~~~A~~~~~ 562 (953)
.......+..+...|+.+.|...+.....+... .+..+..++...|++++|...++
T Consensus 653 -----------------~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ 715 (903)
T PRK04841 653 -----------------ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILE 715 (903)
T ss_pred -----------------hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 000001122334456666666666554432111 12334455666677777777776
Q ss_pred HHHHc----CCCCCh-hhHHHHHHHhccccchHHHHHHHHHHHHcC
Q 037236 563 RMFSI----GVQPCE-ISIVSILSACSQLSALRLGKETHCYALKAI 603 (953)
Q Consensus 563 ~m~~~----g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~ 603 (953)
+.... |..++. .+...+-.++...|+.+.|...+..+.+..
T Consensus 716 ~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 716 ELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 65542 222211 233334445566777777777776666543
No 125
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.19 E-value=3.5e-05 Score=85.17 Aligned_cols=237 Identities=16% Similarity=0.090 Sum_probs=160.2
Q ss_pred CCCCchhHHHHHHHHHHhcCCcccHHHHhccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHH
Q 037236 401 GFDNDELVANAFVVAYAKCGSEISAENVFHGMDSRTVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLIL 480 (953)
Q Consensus 401 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 480 (953)
+++|-...-..+...+.++|-...|..+|++ +..|.-.|.+|...|+..+|..+..+-.+ -+||+.-|..+.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Er-----lemw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFER-----LEMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHh-----HHHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 4566666777888899999999999999987 45688899999999999999888888776 3566666665555
Q ss_pred hhccccccchhhHHHHHHHHhCCCCchhhHhhHHHHHHhcCChhHHHHHHHhcccCCcccHHHHHHHHHhcCChhHHHHH
Q 037236 481 ACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMEDKSLVSWNTMIAGYSQNKLPVEAIVL 560 (953)
Q Consensus 481 ~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 560 (953)
...+..- +++|.++++....+--..|+.+ ..++++++++.+.
T Consensus 466 v~~d~s~-----------------------------------yEkawElsn~~sarA~r~~~~~---~~~~~~fs~~~~h 507 (777)
T KOG1128|consen 466 VLHDPSL-----------------------------------YEKAWELSNYISARAQRSLALL---ILSNKDFSEADKH 507 (777)
T ss_pred hccChHH-----------------------------------HHHHHHHhhhhhHHHHHhhccc---cccchhHHHHHHH
Confidence 4333333 3444444444332211111111 1235667777777
Q ss_pred HHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC--CC-
Q 037236 561 FRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK--DK- 637 (953)
Q Consensus 561 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~- 637 (953)
|+.-.+. .| ....+|-.+..++.++++++.|.+.|.... +|
T Consensus 508 le~sl~~--np----------------------------------lq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd 551 (777)
T KOG1128|consen 508 LERSLEI--NP----------------------------------LQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPD 551 (777)
T ss_pred HHHHhhc--Cc----------------------------------cchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCC
Confidence 7665543 12 134455666667777888888888887665 33
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHH
Q 037236 638 DVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVV 717 (953)
Q Consensus 638 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv 717 (953)
+..+||++-.+|.+.|+-.+|...+.+..+-+.. +...|..........|.+++|++.+.++........|..+...++
T Consensus 552 ~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv 630 (777)
T KOG1128|consen 552 NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIV 630 (777)
T ss_pred chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHH
Confidence 5678999999999999999999999999886522 344455556666788999999999988866544444555555554
Q ss_pred HH
Q 037236 718 DM 719 (953)
Q Consensus 718 ~~ 719 (953)
..
T Consensus 631 ~~ 632 (777)
T KOG1128|consen 631 RT 632 (777)
T ss_pred HH
Confidence 43
No 126
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.18 E-value=7e-05 Score=76.94 Aligned_cols=181 Identities=11% Similarity=0.021 Sum_probs=121.3
Q ss_pred ChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCC--CccHHHHHHHHHHhcCCHHHHHHHhhhcCC--C-CHH---HHH
Q 037236 572 CEISIVSILSACSQLSALRLGKETHCYALKAILTN--DAFVACSIIDMYAKCGCLEQSRRVFDRLKD--K-DVT---SWN 643 (953)
Q Consensus 572 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~---~~~ 643 (953)
....+......+...|+++.|...+..+.+..... ....+..+...|.+.|++++|...|+++.+ | +.. .|.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 34556666778889999999999999988765431 124667789999999999999999998862 2 222 455
Q ss_pred HHHHHHHhc--------CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHH
Q 037236 644 AIIGGHGIH--------GYGKEAIELFEKMLALGHKPDTF-TFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYA 714 (953)
Q Consensus 644 ~li~~~~~~--------g~~~~A~~l~~~m~~~g~~P~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 714 (953)
.+..++... |+.++|++.|+++.. ..|+.. ....+..... ... .. .....
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~a~~~~~~----~~~------~~---------~~~~~ 170 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIR--RYPNSEYAPDAKKRMDY----LRN------RL---------AGKEL 170 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHH--HCCCChhHHHHHHHHHH----HHH------HH---------HHHHH
Confidence 666666654 789999999999998 467542 2222211100 000 00 01122
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCCC-CC----ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 037236 715 CVVDMLGRAGKLDDAFKLIIEMPE-EA----DAGIWSSLLRSCRTYGALKMGEKVAKTLLELEP 773 (953)
Q Consensus 715 ~lv~~l~~~g~~~eA~~~~~~~~~-~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p 773 (953)
.+.+.|.+.|++++|...+++... .| .+..|..++.++...|+.++|...++.+....|
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 456677888888888887776542 12 245777888888888888888887777665544
No 127
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.18 E-value=7.2e-05 Score=73.10 Aligned_cols=124 Identities=14% Similarity=0.128 Sum_probs=69.1
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 037236 607 DAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILM 682 (953)
Q Consensus 607 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~ 682 (953)
|..+...++....+.|++..|...|.+.. ++|...|+.+.-+|.+.|+.++|..-|.+.++ +.| +....+.+..
T Consensus 99 d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~--L~~~~p~~~nNlgm 176 (257)
T COG5010 99 DRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALE--LAPNEPSIANNLGM 176 (257)
T ss_pred cHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHH--hccCCchhhhhHHH
Confidence 33444445555556666666666666554 34555666666666666666666666666665 445 3444555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHh
Q 037236 683 ACNHAGLVENGLKYFSQMQKLHAVKP-KLEHYACVVDMLGRAGKLDDAFKLIIE 735 (953)
Q Consensus 683 a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~lv~~l~~~g~~~eA~~~~~~ 735 (953)
.+.-.|+.+.|..++..... ..+ +...-..|+-+.+..|++++|.++...
T Consensus 177 s~~L~gd~~~A~~lll~a~l---~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 177 SLLLRGDLEDAETLLLPAYL---SPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHcCCHHHHHHHHHHHHh---CCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 66666666666666655532 111 234444555555666666666665543
No 128
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.15 E-value=0.00015 Score=85.27 Aligned_cols=232 Identities=11% Similarity=0.137 Sum_probs=147.0
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHH-HhccccchHHHHHHHHHHHHcCCCCCccHHHHHH
Q 037236 537 SLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILS-ACSQLSALRLGKETHCYALKAILTNDAFVACSII 615 (953)
Q Consensus 537 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 615 (953)
+...|..|+..|...+++++|.++.++..+. .|+...+-.++. .+.+.+..+.+..+ .++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence 4456777888888888888888888766554 566554433332 22222332222222 223
Q ss_pred HHHHhcCCHHHHHHHhhhcC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHH
Q 037236 616 DMYAKCGCLEQSRRVFDRLK--DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVEN 692 (953)
Q Consensus 616 ~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~ 692 (953)
+...+..++.-...+...|. ..+-..+..+..+|.+.|+.++|..+++++++ +.| |....+.+...++.. ++++
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~--~D~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVK--ADRDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHh-hHHH
Confidence 33333333322222333332 12334667788889999999999999999998 567 677788888888888 8999
Q ss_pred HHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC----------------------CCChhHHHHHHH
Q 037236 693 GLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPE----------------------EADAGIWSSLLR 750 (953)
Q Consensus 693 a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~----------------------~~~~~~~~~ll~ 750 (953)
|.+++..++.. |...+++.++.++++++.. ..-..+|.-+-.
T Consensus 168 A~~m~~KAV~~----------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~ 231 (906)
T PRK14720 168 AITYLKKAIYR----------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYE 231 (906)
T ss_pred HHHHHHHHHHH----------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHH
Confidence 99988887653 2333344444444433322 122334455556
Q ss_pred HHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCc
Q 037236 751 SCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKERGLQ 808 (953)
Q Consensus 751 ~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 808 (953)
-|...++++.+..+++.+++.+|.|..+..-++..|. +++.+-..+-+.++-.|+.
T Consensus 232 ~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~~~~~ee~l~~s~l~ 287 (906)
T PRK14720 232 PYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKDHSLLEDYLKMSDIG 287 (906)
T ss_pred HHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccCcchHHHHHHHhccc
Confidence 7788889999999999999999999999999999888 5555544444445544443
No 129
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.12 E-value=0.00021 Score=75.93 Aligned_cols=175 Identities=15% Similarity=0.123 Sum_probs=132.6
Q ss_pred CCHHHHHHHhhhcC------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 037236 622 GCLEQSRRVFDRLK------DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGL 694 (953)
Q Consensus 622 g~~~~A~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~ 694 (953)
.++.++...-+.++ .++.......+.+.........+..++.+ ... | -........-.+...|.+++|+
T Consensus 251 ~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~-~~~---~~~~aa~YG~A~~~~~~~~~d~A~ 326 (484)
T COG4783 251 ERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAK-RSK---RGGLAAQYGRALQTYLAGQYDEAL 326 (484)
T ss_pred hHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHH-HhC---ccchHHHHHHHHHHHHhcccchHH
Confidence 34556666666665 34556666666654443333333333322 221 2 2233444555667889999999
Q ss_pred HHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCC-hhHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 037236 695 KYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE-EAD-AGIWSSLLRSCRTYGALKMGEKVAKTLLEL 771 (953)
Q Consensus 695 ~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l 771 (953)
..++.+++ -.|+ +.......+.+.+.++.++|.+.++++.. .|+ ...|-++..++.+.|+..+|+..++....-
T Consensus 327 ~~l~~L~~---~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~ 403 (484)
T COG4783 327 KLLQPLIA---AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN 403 (484)
T ss_pred HHHHHHHH---hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Confidence 99999876 4566 66667779999999999999999998865 565 788999999999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 037236 772 EPDKAENYVLVSNIYAGSEKWDDVRMMRQRMK 803 (953)
Q Consensus 772 ~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 803 (953)
+|+|+..|.+|+..|..+|+-.+|...+.++-
T Consensus 404 ~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 404 DPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred CCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 99999999999999999999999999887664
No 130
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.10 E-value=0.00021 Score=70.40 Aligned_cols=270 Identities=14% Similarity=0.089 Sum_probs=137.5
Q ss_pred hhHhhHHHHHHhcCChhHHHHHHHhcccC--CcccHHH-HHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHh-
Q 037236 508 FTGISLLSLYMHCEKSSSARVLFDEMEDK--SLVSWNT-MIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSAC- 583 (953)
Q Consensus 508 ~~~~~li~~y~~~g~~~~A~~~f~~~~~~--~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~- 583 (953)
.-.+.|..+|....++..|-..++++... ...-|.. -...+.+.+.+.+|+.+...|... |+...-..-|.+.
T Consensus 45 AgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAI 121 (459)
T KOG4340|consen 45 AGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAI 121 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHH
Confidence 33445555666666677777777666532 1111211 123445567777777777766542 2211111111110
Q ss_pred -ccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCC----CCHHHHHHHHHHHHhcCChHHH
Q 037236 584 -SQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKD----KDVTSWNAIIGGHGIHGYGKEA 658 (953)
Q Consensus 584 -~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A 658 (953)
...+++..++.+.++... +.+..+.+.......+.|++++|.+-|....+ .....||.- -+.-+.|++..|
T Consensus 122 kYse~Dl~g~rsLveQlp~---en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniA-LaHy~~~qyasA 197 (459)
T KOG4340|consen 122 KYSEGDLPGSRSLVEQLPS---ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLA-LAHYSSRQYASA 197 (459)
T ss_pred hcccccCcchHHHHHhccC---CCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHH-HHHHhhhhHHHH
Confidence 112223233332222211 11233333333344455555555555554431 122333322 223344555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHH-------HHHHhhcCCHHHHHH
Q 037236 659 IELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACV-------VDMLGRAGKLDDAFK 731 (953)
Q Consensus 659 ~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l-------v~~l~~~g~~~eA~~ 731 (953)
+++..+++++|++-.+.. .-|..-++... +.+ | .|-.-|-+.+ ...+.+.|+++.|.+
T Consensus 198 Lk~iSEIieRG~r~HPEl---------gIGm~tegiDv-rsv----g-Nt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~e 262 (459)
T KOG4340|consen 198 LKHISEIIERGIRQHPEL---------GIGMTTEGIDV-RSV----G-NTLVLHQSALVEAFNLKAAIEYQLRNYEAAQE 262 (459)
T ss_pred HHHHHHHHHhhhhcCCcc---------CccceeccCch-hcc----c-chHHHHHHHHHHHhhhhhhhhhhcccHHHHHH
Confidence 555555555554321100 00000000000 000 0 0111122333 344678899999999
Q ss_pred HHHhCCC----CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHH
Q 037236 732 LIIEMPE----EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQ 800 (953)
Q Consensus 732 ~~~~~~~----~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 800 (953)
-+..||- +.|+++..++.-. -..+++-.+.+-+.-+++++|--+.++-.+.-+|.+..-++-|..+..
T Consensus 263 aLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 263 ALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred HhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHh
Confidence 9999974 3578887766422 345667777788888899999888888888889999999999888764
No 131
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.04 E-value=7.9e-05 Score=68.86 Aligned_cols=114 Identities=11% Similarity=0.108 Sum_probs=88.9
Q ss_pred HHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 037236 660 ELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMP 737 (953)
Q Consensus 660 ~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~ 737 (953)
+.|++.++ ..| +......+...+...|++++|.+.|+.+.. ..|+ ...+..+...|.+.|++++|.+.+++..
T Consensus 4 ~~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 78 (135)
T TIGR02552 4 ATLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA---YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAA 78 (135)
T ss_pred hhHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666 466 345566777788888999999999988865 3343 6778888888989999999998888764
Q ss_pred C--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcch
Q 037236 738 E--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAEN 778 (953)
Q Consensus 738 ~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~ 778 (953)
. +.+...|..+...+...|+.+.|...++++++++|++...
T Consensus 79 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 79 ALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred hcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 2 4467788888888899999999999999999999987763
No 132
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.02 E-value=0.00073 Score=80.05 Aligned_cols=199 Identities=16% Similarity=0.147 Sum_probs=134.2
Q ss_pred hhhHHHHHHHhccccchHHHHHHHHHHHHc-CCC---CCccHHHHHHHHHHhcCCHHHHHHHhhhcCC-CC-HHHHHHHH
Q 037236 573 EISIVSILSACSQLSALRLGKETHCYALKA-ILT---NDAFVACSIIDMYAKCGCLEQSRRVFDRLKD-KD-VTSWNAII 646 (953)
Q Consensus 573 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~~-~~~~~~li 646 (953)
++.|...+.-..+++..+.|+++.+.+.+. ++. --..+|.+++++-.--|.-+...++|++..+ -| ...|..|.
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~ 1537 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLL 1537 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 345566666666677777777776666553 221 1234666777766666777777788887763 23 34567777
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCH
Q 037236 647 GGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKL 726 (953)
Q Consensus 647 ~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~ 726 (953)
.-|.+.+.+++|.++|++|.+. +.-....|..++..+.+...-+.|..++.++.+...-.-.++...-.+++-.+.|+-
T Consensus 1538 ~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDa 1616 (1710)
T KOG1070|consen 1538 GIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDA 1616 (1710)
T ss_pred HHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 7788888888888888888775 344556677777888887777788888877765321111234445556667778888
Q ss_pred HHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 037236 727 DDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELE 772 (953)
Q Consensus 727 ~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~ 772 (953)
+.+..+|+.... +...-.|+.++..-.+||+.+.++.++++++++.
T Consensus 1617 eRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1617 ERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred hhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 888888876654 2355678888888888888888888888887764
No 133
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.95 E-value=0.0002 Score=77.28 Aligned_cols=126 Identities=13% Similarity=0.149 Sum_probs=107.1
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc
Q 037236 609 FVACSIIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHA 687 (953)
Q Consensus 609 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~ 687 (953)
....+|+..+...++++.|..+|+++.+.++..+..++..+...++-.+|++++++.+.. .| |...+......|...
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhc
Confidence 334456667777899999999999999777666777888888899999999999999974 56 666666667778899
Q ss_pred CCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCCC
Q 037236 688 GLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPEE 739 (953)
Q Consensus 688 g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~ 739 (953)
++++.|+.+.+++++ +.|+ ..+|..|+.+|.+.|++++|+-.++.+|.-
T Consensus 248 ~~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 248 KKYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred CCHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 999999999999976 6787 779999999999999999999999999863
No 134
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.94 E-value=0.00091 Score=64.91 Aligned_cols=157 Identities=20% Similarity=0.235 Sum_probs=117.2
Q ss_pred HHHhcCCHHHHHHHhhhcCCC-----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCH
Q 037236 617 MYAKCGCLEQSRRVFDRLKDK-----DVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLV 690 (953)
Q Consensus 617 ~y~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~ 690 (953)
+..-+|+.+.|...++.+..+ -+.-..+| -+-..|++++|+++++..++. .| |.+++.--+...-..|+.
T Consensus 61 AAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam--~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~ 136 (289)
T KOG3060|consen 61 AALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAM--LLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLAILKAQGKN 136 (289)
T ss_pred HHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHH--HHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCc
Confidence 334467788888887776522 22222222 255678999999999999886 46 778887777777778888
Q ss_pred HHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CC-ChhHHHHHHHHHHhcC---ChhHHHHHH
Q 037236 691 ENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPE-EA-DAGIWSSLLRSCRTYG---ALKMGEKVA 765 (953)
Q Consensus 691 ~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~-~~~~~~~ll~~~~~~g---~~~~a~~~~ 765 (953)
-+|++-+....+. +.-|.+.|.-+.++|...|+++.|.-.++++.. .| ++..+..+...+...| |++.+.+.+
T Consensus 137 l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy 214 (289)
T KOG3060|consen 137 LEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYY 214 (289)
T ss_pred HHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 8888888877664 445678899999999999999999999988753 44 5667777777766555 889999999
Q ss_pred HHHhccCCCCcchH
Q 037236 766 KTLLELEPDKAENY 779 (953)
Q Consensus 766 ~~~~~l~p~~~~~~ 779 (953)
++++++.|.+....
T Consensus 215 ~~alkl~~~~~ral 228 (289)
T KOG3060|consen 215 ERALKLNPKNLRAL 228 (289)
T ss_pred HHHHHhChHhHHHH
Confidence 99999999666544
No 135
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.91 E-value=0.00019 Score=77.34 Aligned_cols=122 Identities=11% Similarity=0.162 Sum_probs=98.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CC-ChhHHHHHHHHHHh
Q 037236 677 FVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPE-EA-DAGIWSSLLRSCRT 754 (953)
Q Consensus 677 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~-~~~~~~~ll~~~~~ 754 (953)
..+|+..+...++++.|..+|+++.+. .|+ ....|+..+...++-.+|.+++++... .| +...+......|..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 345666677788888888888888652 354 445577778788888888888877654 33 56677777777889
Q ss_pred cCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 037236 755 YGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMK 803 (953)
Q Consensus 755 ~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 803 (953)
.++.+.|..+++++.++.|++..++..|+.+|...|+|++|+...+.+-
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999887664
No 136
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.91 E-value=1.8e-05 Score=53.03 Aligned_cols=35 Identities=34% Similarity=0.588 Sum_probs=32.8
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh
Q 037236 539 VSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCE 573 (953)
Q Consensus 539 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 573 (953)
++||+||.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999973
No 137
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.89 E-value=1.9e-05 Score=52.95 Aligned_cols=34 Identities=41% Similarity=0.679 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 037236 640 TSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPD 673 (953)
Q Consensus 640 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~ 673 (953)
.+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3799999999999999999999999999999997
No 138
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.76 E-value=0.0091 Score=58.67 Aligned_cols=156 Identities=13% Similarity=0.097 Sum_probs=84.0
Q ss_pred HHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCC
Q 037236 614 IIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACN----HAGL 689 (953)
Q Consensus 614 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~----~~g~ 689 (953)
-...|.+.|++++|.+.......-+....+. ..+.+..+.+-|.+.+++|.+ + -+..|.+-|..++. ..+.
T Consensus 114 aa~i~~~~~~~deAl~~~~~~~~lE~~Al~V--qI~lk~~r~d~A~~~lk~mq~--i-ded~tLtQLA~awv~la~ggek 188 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLGENLEAAALNV--QILLKMHRFDLAEKELKKMQQ--I-DEDATLTQLAQAWVKLATGGEK 188 (299)
T ss_pred hhHHhhcCCChHHHHHHHhccchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHc--c-chHHHHHHHHHHHHHHhccchh
Confidence 3456677777777777776633323333332 234555667777777777766 2 24455555555553 2345
Q ss_pred HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcC-ChhHHHHHHH
Q 037236 690 VENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYG-ALKMGEKVAK 766 (953)
Q Consensus 690 ~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g-~~~~a~~~~~ 766 (953)
+.+|.-+|++|.++ ..|+..+.+.+..+....|+++||..+++.... ..++.+..+++-.-...| +.+...+...
T Consensus 189 ~qdAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~ 266 (299)
T KOG3081|consen 189 IQDAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLS 266 (299)
T ss_pred hhhHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 66777777777543 345555555555555566666666666655543 223444433333333333 3344455555
Q ss_pred HHhccCCCCc
Q 037236 767 TLLELEPDKA 776 (953)
Q Consensus 767 ~~~~l~p~~~ 776 (953)
++...+|+.+
T Consensus 267 QLk~~~p~h~ 276 (299)
T KOG3081|consen 267 QLKLSHPEHP 276 (299)
T ss_pred HHHhcCCcch
Confidence 5555555443
No 139
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.76 E-value=0.0011 Score=61.77 Aligned_cols=123 Identities=13% Similarity=0.104 Sum_probs=70.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC--hhHHHH
Q 037236 642 WNAIIGGHGIHGYGKEAIELFEKMLALGHKPDT----FTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK--LEHYAC 715 (953)
Q Consensus 642 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~ 715 (953)
|..++..+ ..++...+...++++.+. .|+. .....+...+...|++++|...|+...... ..|. ....-.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~ 90 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARLR 90 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHH
Confidence 34444444 367777777777777774 3322 334445566777788888888888776532 2222 123344
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCC-CChhHHHHHHHHHHhcCChhHHHHHHHHH
Q 037236 716 VVDMLGRAGKLDDAFKLIIEMPEE-ADAGIWSSLLRSCRTYGALKMGEKVAKTL 768 (953)
Q Consensus 716 lv~~l~~~g~~~eA~~~~~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 768 (953)
|..++...|++++|+..++..+.. ..+..+..++..+...|+.+.|..+++++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 566777777777777777664422 22334444444455555555555555443
No 140
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.72 E-value=0.00014 Score=72.51 Aligned_cols=98 Identities=14% Similarity=0.167 Sum_probs=78.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhcCCCCChhH-HHHHHHHHhhcCCHHHHHHHHHhCCC-CCC-hhHHHHHHHHHHhcCCh
Q 037236 682 MACNHAGLVENGLKYFSQMQKLHAVKPKLEH-YACVVDMLGRAGKLDDAFKLIIEMPE-EAD-AGIWSSLLRSCRTYGAL 758 (953)
Q Consensus 682 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~-~~~lv~~l~~~g~~~eA~~~~~~~~~-~~~-~~~~~~ll~~~~~~g~~ 758 (953)
+-..+.+++.+|+..|..+++ +.|+-.+ |..=..+|.+.|.++.|.+=.+.... .|. ...|..|.-++...|++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH
Confidence 456788999999999999876 7787444 44558889999999999988877654 443 56889999999999999
Q ss_pred hHHHHHHHHHhccCCCCcchHHHH
Q 037236 759 KMGEKVAKTLLELEPDKAENYVLV 782 (953)
Q Consensus 759 ~~a~~~~~~~~~l~p~~~~~~~~l 782 (953)
++|+++|+++++++|+|...-..|
T Consensus 166 ~~A~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred HHHHHHHHhhhccCCCcHHHHHHH
Confidence 999999999999999888544333
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.72 E-value=0.00083 Score=62.71 Aligned_cols=124 Identities=19% Similarity=0.109 Sum_probs=94.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCCC-CCh----hHHHHHH
Q 037236 676 TFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPEE-ADA----GIWSSLL 749 (953)
Q Consensus 676 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~-~~~----~~~~~ll 749 (953)
.|..++.+. ..++.+.+...++.+.+.++-.|- ....-.+...+...|++++|.+.|+..... ||. ..+-.|.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 344444444 488899999999999886554432 334445678889999999999999987653 443 3556677
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHH
Q 037236 750 RSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQR 801 (953)
Q Consensus 750 ~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 801 (953)
..+...|+++.|...++. ..-.|-.+..+.+++++|...|++++|...++.
T Consensus 93 ~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 778899999999999977 344556778889999999999999999998764
No 142
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.72 E-value=0.00028 Score=76.65 Aligned_cols=101 Identities=13% Similarity=0.097 Sum_probs=59.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCC
Q 037236 681 LMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGA 757 (953)
Q Consensus 681 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~ 757 (953)
...+...|++++|+.+|+++++ +.|+ ...|..+..+|.+.|++++|+..++++.. +.+...|..++.+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 4455566677777777766655 3444 45555566666666666666666655532 2244555566666666666
Q ss_pred hhHHHHHHHHHhccCCCCcchHHHHHH
Q 037236 758 LKMGEKVAKTLLELEPDKAENYVLVSN 784 (953)
Q Consensus 758 ~~~a~~~~~~~~~l~p~~~~~~~~l~~ 784 (953)
++.|...++++++++|+++.....+..
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~ 112 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKE 112 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 666666666666666666655544433
No 143
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.70 E-value=5.8e-05 Score=50.11 Aligned_cols=33 Identities=30% Similarity=0.540 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 037236 640 TSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP 672 (953)
Q Consensus 640 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P 672 (953)
.+||+++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 478888888888888888888888888888777
No 144
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.68 E-value=0.2 Score=57.93 Aligned_cols=124 Identities=10% Similarity=0.090 Sum_probs=82.5
Q ss_pred HhcCChhhHHHHhhcCCCCCc-hhHHHHHHHH--hcCCChhhHHHHHHHhHhcCCCCCCcccHHHHHHHhhcCCChhhHh
Q 037236 109 SLCGFPLDSRRVFDSLKTRNL-FQWNALVSGF--TKNELYPDVLSIFVELLSDTELKPDNFTFPCVIKACGGIADVSFGS 185 (953)
Q Consensus 109 ~~~g~~~~A~~~f~~~~~~~~-~~~~~li~~~--~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 185 (953)
...+++..|.+-.+++-.+.+ ..|...+.++ .+.|..++|..+++.... .+.. |..|...+-..+...++.+++.
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~-~~~~-D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYG-LKGT-DDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhcc-CCCC-chHHHHHHHHHHHHHhhhhHHH
Confidence 456777778777777643322 2455555554 478888888888777654 2222 6667777777788888888888
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHhhccCChH----HHHHHhccCCCCCeecHHH
Q 037236 186 GVHGMAAKMGLIGDVFVSNALIAMYGKCAFVE----EMVKLFEVMPERNLVSWNS 236 (953)
Q Consensus 186 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~----~A~~~f~~m~~~~~~~~~~ 236 (953)
.++++..+.. |+......+..+|+|-+++. .|.+++...|++--.-|+.
T Consensus 98 ~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV 150 (932)
T KOG2053|consen 98 HLYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSV 150 (932)
T ss_pred HHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHH
Confidence 8888887654 44666677777777776654 4666777666655555554
No 145
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.66 E-value=7e-05 Score=49.70 Aligned_cols=34 Identities=26% Similarity=0.490 Sum_probs=31.3
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 037236 538 LVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQP 571 (953)
Q Consensus 538 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 571 (953)
+.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3589999999999999999999999999999887
No 146
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.65 E-value=0.001 Score=64.29 Aligned_cols=131 Identities=16% Similarity=0.232 Sum_probs=94.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHH
Q 037236 638 DVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPD--TFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYA 714 (953)
Q Consensus 638 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~ 714 (953)
....+..+...+...|++++|+..|++.++....|+ ...+..+..++.+.|++++|..++++..+ +.|+ ...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHH
Confidence 455677788888888999999999999887533332 35677888888899999999999888876 4454 55666
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCc
Q 037236 715 CVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKW 792 (953)
Q Consensus 715 ~lv~~l~~~g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~ 792 (953)
.+..+|...|+...|..-++... ..++.|...++++++++|++ |..+.+.+...|+.
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A~------------------~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~~ 167 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEAE------------------ALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGRS 167 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHHH------------------HHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCcc
Confidence 77777877777666554333211 12567888999999999877 56666666666553
No 147
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.63 E-value=0.00064 Score=61.01 Aligned_cols=102 Identities=13% Similarity=0.083 Sum_probs=51.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCC----hhHHHHHHHH
Q 037236 678 VGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE-EAD----AGIWSSLLRS 751 (953)
Q Consensus 678 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~~----~~~~~~ll~~ 751 (953)
..+...+...|++++|.+.|+.+.+.++-.|. ...+..+..++.+.|++++|.+.++.... .|+ +.+|..+...
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 34444444455555555555555432211111 22333344555555555555555544322 122 3445556666
Q ss_pred HHhcCChhHHHHHHHHHhccCCCCcchH
Q 037236 752 CRTYGALKMGEKVAKTLLELEPDKAENY 779 (953)
Q Consensus 752 ~~~~g~~~~a~~~~~~~~~l~p~~~~~~ 779 (953)
+...|+.+.|...++++++..|+++...
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 6666777777777777777777665433
No 148
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.62 E-value=0.0026 Score=61.86 Aligned_cols=170 Identities=12% Similarity=0.108 Sum_probs=130.7
Q ss_pred cCCHHHHHHHhhhcC--------CCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCH
Q 037236 621 CGCLEQSRRVFDRLK--------DKDVT-SWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTF-TFVGILMACNHAGLV 690 (953)
Q Consensus 621 ~g~~~~A~~~~~~~~--------~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~-t~~~ll~a~~~~g~~ 690 (953)
..+.++..+++.++. .++.. .|..++-+....|+.+.|...++++... + |.+. .-..-..-+...|++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhch
Confidence 457888888888776 12332 3445566667789999999999999886 3 6433 222233345678999
Q ss_pred HHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCChhHHHHHHHHHHhcCChhHHHHHHHH
Q 037236 691 ENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMP--EEADAGIWSSLLRSCRTYGALKMGEKVAKT 767 (953)
Q Consensus 691 ~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 767 (953)
++|++++++.+++ .|+ ...|--=+-++-..|+--+|++-+.... +..|...|.-|...|...|+++.|.-++|+
T Consensus 103 ~~A~e~y~~lL~d---dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 103 KEAIEYYESLLED---DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred hhHHHHHHHHhcc---CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 9999999999774 354 5556666667777888889988877664 367999999999999999999999999999
Q ss_pred HhccCCCCcchHHHHHHHHHhcCCchHH
Q 037236 768 LLELEPDKAENYVLVSNIYAGSEKWDDV 795 (953)
Q Consensus 768 ~~~l~p~~~~~~~~l~~~y~~~g~~~~a 795 (953)
++=+.|-++..+..|+.++...|--+.-
T Consensus 180 ~ll~~P~n~l~f~rlae~~Yt~gg~eN~ 207 (289)
T KOG3060|consen 180 LLLIQPFNPLYFQRLAEVLYTQGGAENL 207 (289)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHhhHHHH
Confidence 9999999999999999999888764443
No 149
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.61 E-value=0.00042 Score=69.20 Aligned_cols=97 Identities=15% Similarity=0.180 Sum_probs=84.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhc
Q 037236 646 IGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRA 723 (953)
Q Consensus 646 i~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~ 723 (953)
..-+.+.+++++|+..|.+.++ +.| |.+-|..-..+|++.|.++.|++-.+..+. +.|. ...|..|.-+|...
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~~~~ 162 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAYLAL 162 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHHHcc
Confidence 5557788999999999999999 788 778888999999999999999999888876 7888 88999999999999
Q ss_pred CCHHHHHHHHHhCCC-CCChhHHHH
Q 037236 724 GKLDDAFKLIIEMPE-EADAGIWSS 747 (953)
Q Consensus 724 g~~~eA~~~~~~~~~-~~~~~~~~~ 747 (953)
|++++|++.|++... .|+-.+|.+
T Consensus 163 gk~~~A~~aykKaLeldP~Ne~~K~ 187 (304)
T KOG0553|consen 163 GKYEEAIEAYKKALELDPDNESYKS 187 (304)
T ss_pred CcHHHHHHHHHhhhccCCCcHHHHH
Confidence 999999999998764 676555543
No 150
>PRK15331 chaperone protein SicA; Provisional
Probab=97.59 E-value=0.0011 Score=60.86 Aligned_cols=101 Identities=11% Similarity=0.052 Sum_probs=83.2
Q ss_pred cCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHH
Q 037236 704 HAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYV 780 (953)
Q Consensus 704 ~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~ 780 (953)
.|+.++ .+..-....-+...|++++|..+|+-+.. .-++.-|..|...|...++++.|...+..+..++++||.++.
T Consensus 30 ~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f 109 (165)
T PRK15331 30 HGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVF 109 (165)
T ss_pred hCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccc
Confidence 345554 34444455556778999999988876543 456778999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHH
Q 037236 781 LVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 781 ~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
..+..|...|+.+.|...+....+
T Consensus 110 ~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 110 FTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred hHHHHHHHhCCHHHHHHHHHHHHh
Confidence 999999999999999998876654
No 151
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.58 E-value=0.0018 Score=73.42 Aligned_cols=47 Identities=19% Similarity=0.265 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHHHHHHh--cC---ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHH
Q 037236 635 KDKDVTSWNAIIGGHGI--HG---YGKEAIELFEKMLALGHKPDT-FTFVGILMA 683 (953)
Q Consensus 635 ~~~~~~~~~~li~~~~~--~g---~~~~A~~l~~~m~~~g~~P~~-~t~~~ll~a 683 (953)
...|...|...+.+... .+ +..+|..+|++.++ ..|+. ..+..+..+
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~ 385 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALA 385 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHH
Confidence 35677788888777543 22 36789999999999 68854 445444333
No 152
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.57 E-value=0.00042 Score=58.89 Aligned_cols=91 Identities=18% Similarity=0.241 Sum_probs=66.4
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 037236 713 YACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSE 790 (953)
Q Consensus 713 ~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g 790 (953)
+..+...+.+.|++++|.+.+++... +.+..+|..+...+...|+++.|...++.+++..|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 34455666677777777777766543 2334566667777777788888888888888888888888888888888888
Q ss_pred CchHHHHHHHHHH
Q 037236 791 KWDDVRMMRQRMK 803 (953)
Q Consensus 791 ~~~~a~~~~~~m~ 803 (953)
++++|....+...
T Consensus 83 ~~~~a~~~~~~~~ 95 (100)
T cd00189 83 KYEEALEAYEKAL 95 (100)
T ss_pred hHHHHHHHHHHHH
Confidence 8888887766554
No 153
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.56 E-value=0.0032 Score=60.59 Aligned_cols=110 Identities=15% Similarity=0.146 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHH
Q 037236 639 VTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP--DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYAC 715 (953)
Q Consensus 639 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P--~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ 715 (953)
...|..++..+...|++++|+..|++.+.....| ...++..+...+.+.|++++|+..++...+ +.|+ ...+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~---~~~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE---RNPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCcHHHHHH
Confidence 4567778888888999999999999998753233 234788888999999999999999998875 4455 555666
Q ss_pred HHHHHh-------hcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 037236 716 VVDMLG-------RAGKLDDAFKLIIEMPEEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKA 776 (953)
Q Consensus 716 lv~~l~-------~~g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~ 776 (953)
+..++. +.|++++|+..+ +.|...++++++.+|++.
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~~-------------------------~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAWF-------------------------DQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHHH-------------------------HHHHHHHHHHHHhCcccH
Confidence 666666 555555554443 356677888888888544
No 154
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.56 E-value=0.00075 Score=73.37 Aligned_cols=103 Identities=10% Similarity=0.106 Sum_probs=84.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhh
Q 037236 645 IIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGR 722 (953)
Q Consensus 645 li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~ 722 (953)
....+...|++++|+++|+++++ ..| +...|..+..+|...|++++|+..++++++ +.|+ ...|..+..+|.+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHH
Confidence 35567788999999999999999 567 677888899999999999999999999976 5665 7788889999999
Q ss_pred cCCHHHHHHHHHhCCC-CCChhHHHHHHHHH
Q 037236 723 AGKLDDAFKLIIEMPE-EADAGIWSSLLRSC 752 (953)
Q Consensus 723 ~g~~~eA~~~~~~~~~-~~~~~~~~~ll~~~ 752 (953)
.|++++|+..+++... .|+......++..|
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999988754 45544444444443
No 155
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.54 E-value=0.00083 Score=60.27 Aligned_cols=95 Identities=13% Similarity=0.100 Sum_probs=80.9
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCC----hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC---cchHHHH
Q 037236 711 EHYACVVDMLGRAGKLDDAFKLIIEMPE-EAD----AGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDK---AENYVLV 782 (953)
Q Consensus 711 ~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~---~~~~~~l 782 (953)
..+..++..+.+.|++++|.+.++.+.. .|+ ...+..+...+...|+++.|...++.++...|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 4566778889999999999999988754 343 3467778888999999999999999999999885 5678999
Q ss_pred HHHHHhcCCchHHHHHHHHHHHC
Q 037236 783 SNIYAGSEKWDDVRMMRQRMKER 805 (953)
Q Consensus 783 ~~~y~~~g~~~~a~~~~~~m~~~ 805 (953)
+.+|...|++++|.+.++.+.+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHH
Confidence 99999999999999998888764
No 156
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.52 E-value=0.00019 Score=57.08 Aligned_cols=64 Identities=17% Similarity=0.253 Sum_probs=57.9
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcC-CchHHHHHHHHHHH
Q 037236 741 DAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSE-KWDDVRMMRQRMKE 804 (953)
Q Consensus 741 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g-~~~~a~~~~~~m~~ 804 (953)
++.+|..++..+...|+++.|+..++++++++|+++.++..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999 79999997766543
No 157
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.51 E-value=0.22 Score=54.14 Aligned_cols=160 Identities=16% Similarity=0.098 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 037236 640 TSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVD 718 (953)
Q Consensus 640 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~ 718 (953)
.+|-.+++.-.+..-.+.|..+|.+..+.+..+ +.....+++.-++ .++.+-|.++|+.-.+.+|-.| .--.+.++
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p--~yv~~Yld 443 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSP--EYVLKYLD 443 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCCh--HHHHHHHH
Confidence 357777777667667889999999999988888 5555666666554 6788999999998888776555 44466788
Q ss_pred HHhhcCCHHHHHHHHHhCCCC---C--ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc----chHHHHHHHHHhc
Q 037236 719 MLGRAGKLDDAFKLIIEMPEE---A--DAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKA----ENYVLVSNIYAGS 789 (953)
Q Consensus 719 ~l~~~g~~~eA~~~~~~~~~~---~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~----~~~~~l~~~y~~~ 789 (953)
.+.+.++-..|..+|++.... | ...+|..++.--..-||+..+.++-++....-|.+. ..-.++.+-|.-.
T Consensus 444 fL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~ 523 (656)
T KOG1914|consen 444 FLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGIL 523 (656)
T ss_pred HHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhc
Confidence 899999999999999987643 2 347999999999999999999999988887766221 1234566677777
Q ss_pred CCchHHHHHHHHH
Q 037236 790 EKWDDVRMMRQRM 802 (953)
Q Consensus 790 g~~~~a~~~~~~m 802 (953)
+....-..-.+.|
T Consensus 524 d~~~c~~~elk~l 536 (656)
T KOG1914|consen 524 DLYPCSLDELKFL 536 (656)
T ss_pred ccccccHHHHHhh
Confidence 7776665555555
No 158
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.50 E-value=0.0052 Score=72.72 Aligned_cols=209 Identities=11% Similarity=0.034 Sum_probs=142.7
Q ss_pred CCCCC-hhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHH
Q 037236 568 GVQPC-EISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAII 646 (953)
Q Consensus 568 g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li 646 (953)
+..|+ ...+..++..+...+.++++.++.....+.... ....|-.++..|...++.++|..+ .++
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l 90 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL-------------NLI 90 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh-------------hhh
Confidence 34443 345666777777777888887777755554332 334444444466666665555443 233
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCC
Q 037236 647 GGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGK 725 (953)
Q Consensus 647 ~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~ 725 (953)
.......++....-+...|.+. .-+...+..+..+|.+.|+.+++...++++++ +.|+ +...+.+...|... +
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~---~D~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVK---ADRDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred hhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCcccHHHHHHHHHHHHHh-h
Confidence 4444444454444444455552 22456888899999999999999999999987 4566 88899999999999 9
Q ss_pred HHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHH--------------------HHHHH
Q 037236 726 LDDAFKLIIEMPEEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYV--------------------LVSNI 785 (953)
Q Consensus 726 ~~eA~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~--------------------~l~~~ 785 (953)
+++|++++.+.. ..+...+++..+....+++++.+|++..... -|-+-
T Consensus 165 L~KA~~m~~KAV------------~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~ 232 (906)
T PRK14720 165 KEKAITYLKKAI------------YRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEP 232 (906)
T ss_pred HHHHHHHHHHHH------------HHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHH
Confidence 999999998753 2244555777788888888888887665532 23356
Q ss_pred HHhcCCchHHHHHHHHHHHCCCc
Q 037236 786 YAGSEKWDDVRMMRQRMKERGLQ 808 (953)
Q Consensus 786 y~~~g~~~~a~~~~~~m~~~~~~ 808 (953)
|.+.++|+++..+++.+-+...+
T Consensus 233 y~~~~~~~~~i~iLK~iL~~~~~ 255 (906)
T PRK14720 233 YKALEDWDEVIYILKKILEHDNK 255 (906)
T ss_pred HhhhhhhhHHHHHHHHHHhcCCc
Confidence 88889999999999998775444
No 159
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.00079 Score=67.84 Aligned_cols=101 Identities=13% Similarity=0.103 Sum_probs=82.1
Q ss_pred CCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhc-C--ChhHHHHHHHHHhccCCCCcchHH
Q 037236 707 KPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTY-G--ALKMGEKVAKTLLELEPDKAENYV 780 (953)
Q Consensus 707 ~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~-g--~~~~a~~~~~~~~~l~p~~~~~~~ 780 (953)
+|+ .+.|..|...|.+.|++++|..-|.+... .+++.++..+..++... | ...++..++++++.++|.|..+..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 454 77788888888888888888877776543 45677777777775433 2 568899999999999999999999
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHCCC
Q 037236 781 LVSNIYAGSEKWDDVRMMRQRMKERGL 807 (953)
Q Consensus 781 ~l~~~y~~~g~~~~a~~~~~~m~~~~~ 807 (953)
+|+-.+...|++.+|...++.|.+...
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 999999999999999999999987543
No 160
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.43 E-value=0.41 Score=55.44 Aligned_cols=124 Identities=13% Similarity=0.080 Sum_probs=83.4
Q ss_pred ccCChHHHHHHhccCCCC-CeecHHHHHHHH--HcCCCchHHHHHHHHhhhccCCCCCChhhHHHHHHhhhcCCCchHHH
Q 037236 212 KCAFVEEMVKLFEVMPER-NLVSWNSIICGS--SENGFSCESFDLLIKMMGCEEGFIPDVATVVTVLPVCAGEGNVDLGI 288 (953)
Q Consensus 212 ~~g~~~~A~~~f~~m~~~-~~~~~~~li~~~--~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 288 (953)
..+++..|....+++..+ ....|..++.++ .+.|+.++|..+++.. ...+.. |..|...+-.++...+..+++.
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~--~~~~~~-D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEAL--YGLKGT-DDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhh--ccCCCC-chHHHHHHHHHHHHHhhhhHHH
Confidence 457777888777776532 223466666655 4688888888888887 344333 7778877777888888888888
Q ss_pred HHHHHHHHhCCCCCchHHHHHHHhhHhcCChhH----HHHHHhcCCCCCcccHHHH
Q 037236 289 LVHGLAVKLGLTRELMVNNALVDMYAKCGFLSE----AQILFDKNNNKNVVSWNTI 340 (953)
Q Consensus 289 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~----A~~~f~~~~~~d~~~~~~l 340 (953)
.+++...+. .|+......+..+|.+.+++.+ |.+++...+++--.-|+.+
T Consensus 98 ~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~ 151 (932)
T KOG2053|consen 98 HLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVI 151 (932)
T ss_pred HHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHH
Confidence 888887765 3556666677777777766543 5566665555555555544
No 161
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.0019 Score=67.09 Aligned_cols=160 Identities=11% Similarity=0.084 Sum_probs=115.6
Q ss_pred HHHHHHH-HHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHH----
Q 037236 640 TSWNAII-GGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHY---- 713 (953)
Q Consensus 640 ~~~~~li-~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~---- 713 (953)
.+|..+- .++...|++++|...--..++ ..+ +......-..++-..++.+.|...|++.++ +.|+-..-
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilk--ld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~ 243 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILK--LDATNAEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSAS 243 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHh--cccchhHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHh
Confidence 4444432 356678888888888777766 344 333333333345567788889998887754 45542211
Q ss_pred ---------HHHHHHHhhcCCHHHHHHHHHhCCC------CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcch
Q 037236 714 ---------ACVVDMLGRAGKLDDAFKLIIEMPE------EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAEN 778 (953)
Q Consensus 714 ---------~~lv~~l~~~g~~~eA~~~~~~~~~------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~ 778 (953)
.-=.....+.|++.+|.+.+.+... +|++..|.....+...+|+.++|....+.+++++|.-..+
T Consensus 244 ~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syika 323 (486)
T KOG0550|consen 244 MMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKA 323 (486)
T ss_pred hhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHH
Confidence 1122345678999999999987753 3556667777777888999999999999999999999999
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 779 YVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 779 ~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
|..-++.|...++|++|.+-++..-+
T Consensus 324 ll~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 324 LLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999996655433
No 162
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.42 E-value=0.00017 Score=46.62 Aligned_cols=31 Identities=32% Similarity=0.560 Sum_probs=27.0
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 037236 539 VSWNTMIAGYSQNKLPVEAIVLFRRMFSIGV 569 (953)
Q Consensus 539 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 569 (953)
++||+||.+|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4789999999999999999999999988764
No 163
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.41 E-value=0.00017 Score=46.63 Aligned_cols=31 Identities=32% Similarity=0.506 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 037236 640 TSWNAIIGGHGIHGYGKEAIELFEKMLALGH 670 (953)
Q Consensus 640 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 670 (953)
++||+++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3688888888888888888888888888764
No 164
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.37 E-value=0.0036 Score=57.29 Aligned_cols=95 Identities=7% Similarity=-0.039 Sum_probs=57.0
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHH
Q 037236 636 DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHY 713 (953)
Q Consensus 636 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~ 713 (953)
+.+....-++..-+...|++++|..+|+-... +.| +..-|..|..+|-..|++++|+..|..... +.|+ +..+
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~---L~~ddp~~~ 106 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ---IKIDAPQAP 106 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh---cCCCCchHH
Confidence 33444444455555666667777776666666 456 445566666666666677777766666644 4444 5555
Q ss_pred HHHHHHHhhcCCHHHHHHHHHh
Q 037236 714 ACVVDMLGRAGKLDDAFKLIIE 735 (953)
Q Consensus 714 ~~lv~~l~~~g~~~eA~~~~~~ 735 (953)
-.+..+|...|+.++|++-|+.
T Consensus 107 ~~ag~c~L~lG~~~~A~~aF~~ 128 (157)
T PRK15363 107 WAAAECYLACDNVCYAIKALKA 128 (157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 5566666666666666666654
No 165
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.37 E-value=9.9e-05 Score=48.54 Aligned_cols=32 Identities=28% Similarity=0.560 Sum_probs=30.6
Q ss_pred HHHHhccCCCCcchHHHHHHHHHhcCCchHHH
Q 037236 765 AKTLLELEPDKAENYVLVSNIYAGSEKWDDVR 796 (953)
Q Consensus 765 ~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~ 796 (953)
++++++++|+|+.+|..|+++|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 68899999999999999999999999999986
No 166
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.37 E-value=0.00012 Score=60.98 Aligned_cols=58 Identities=12% Similarity=0.190 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHH
Q 037236 743 GIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQR 801 (953)
Q Consensus 743 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 801 (953)
..|-.+...+...|+++.|..++++ .+.+|.++....+++..|.+.|++++|++++++
T Consensus 26 ~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 26 AYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 3444455555555555555555555 555666666666677777777777777776653
No 167
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.36 E-value=0.22 Score=52.85 Aligned_cols=121 Identities=18% Similarity=0.232 Sum_probs=85.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 037236 611 ACSIIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLV 690 (953)
Q Consensus 611 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~ 690 (953)
.+..+.-+...|+...|.++-.+..-||-.-|-..+.+|+..|++++-.++... +-.++-|...+.+|...|..
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 344455566778888898888888888888888899999999998876654332 12347777888888888888
Q ss_pred HHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhHHHHHHHH
Q 037236 691 ENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRS 751 (953)
Q Consensus 691 ~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~~~~~~~ll~~ 751 (953)
.+|..+...+ | +.--+.+|.++|.+.+|.+..-+ ..|...+..+...
T Consensus 254 ~eA~~yI~k~-------~----~~~rv~~y~~~~~~~~A~~~A~~---~kd~~~L~~i~~~ 300 (319)
T PF04840_consen 254 KEASKYIPKI-------P----DEERVEMYLKCGDYKEAAQEAFK---EKDIDLLKQILKR 300 (319)
T ss_pred HHHHHHHHhC-------C----hHHHHHHHHHCCCHHHHHHHHHH---cCCHHHHHHHHHH
Confidence 8888887653 1 24467888889998888776544 2344444444333
No 168
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.35 E-value=0.00048 Score=53.95 Aligned_cols=57 Identities=21% Similarity=0.311 Sum_probs=44.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 748 LLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 748 ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
+...+...|+++.|+..++++++.+|+++.++..++.++...|++++|...++.+.+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345567788888888888888888888888888888888888888888887776654
No 169
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.34 E-value=0.031 Score=55.09 Aligned_cols=112 Identities=12% Similarity=0.145 Sum_probs=70.0
Q ss_pred HHHHHhcCCHHHHHHHhhhcCCC-CHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 037236 615 IDMYAKCGCLEQSRRVFDRLKDK-DVTSWNAIIGGHGI----HGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGL 689 (953)
Q Consensus 615 i~~y~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~ 689 (953)
+..+.|..+++-|.+.+++|.+- +-.+.+.|..++.+ .+...+|.-+|++|-++ ..|+..+.+..+.++...|+
T Consensus 144 VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 144 VQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcC
Confidence 44455666777777777777643 33455555555433 34577777777777664 56777777777777777788
Q ss_pred HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHH
Q 037236 690 VENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDA 729 (953)
Q Consensus 690 ~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA 729 (953)
+++|..+++....+..- ++++...++-.-...|.-.++
T Consensus 223 ~eeAe~lL~eaL~kd~~--dpetL~Nliv~a~~~Gkd~~~ 260 (299)
T KOG3081|consen 223 YEEAESLLEEALDKDAK--DPETLANLIVLALHLGKDAEV 260 (299)
T ss_pred HHHHHHHHHHHHhccCC--CHHHHHHHHHHHHHhCCChHH
Confidence 88888777777654322 245555555554555554443
No 170
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.31 E-value=0.0065 Score=63.67 Aligned_cols=136 Identities=16% Similarity=0.159 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 037236 640 TSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMA-CNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVD 718 (953)
Q Consensus 640 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~ 718 (953)
.+|-.++....+.+..+.|..+|.+.++.+ .-+...|...... +...++.+.|.++|+...+.++- +...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~--~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPS--DPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT---HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC--CHHHHHHHHH
Confidence 468888888888888999999999998632 2245556555555 33467777799999999887654 4567888889
Q ss_pred HHhhcCCHHHHHHHHHhCCCC-CC----hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcch
Q 037236 719 MLGRAGKLDDAFKLIIEMPEE-AD----AGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAEN 778 (953)
Q Consensus 719 ~l~~~g~~~eA~~~~~~~~~~-~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~ 778 (953)
.+.+.|+.+.|..+|++.... |. ..+|...+.--..+|+++....+.+++.+.-|++...
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~ 143 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSL 143 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HH
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHH
Confidence 999999999999999987652 33 3599999999999999999999999999998875543
No 171
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.27 E-value=0.32 Score=50.70 Aligned_cols=265 Identities=15% Similarity=0.141 Sum_probs=169.5
Q ss_pred cCChhHHHHHHHhcc---cCCcccHHHHHHHH--HhcCChhHHHHHHHHHHHcCCCCCh--hhHHHHHHHhccccchHHH
Q 037236 520 CEKSSSARVLFDEME---DKSLVSWNTMIAGY--SQNKLPVEAIVLFRRMFSIGVQPCE--ISIVSILSACSQLSALRLG 592 (953)
Q Consensus 520 ~g~~~~A~~~f~~~~---~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a 592 (953)
.|+-..|++.-.+.. ..|....-.++.+- .-.|+++.|.+-|+.|... |.. .-+..+.-.-.+.|+.+.+
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHH
Confidence 456666666555433 23444444444432 3368888888888888752 221 1223333344567888888
Q ss_pred HHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC-----CCCHH--HHHHHHHHHH---hcCChHHHHHHH
Q 037236 593 KETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK-----DKDVT--SWNAIIGGHG---IHGYGKEAIELF 662 (953)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~--~~~~li~~~~---~~g~~~~A~~l~ 662 (953)
+++-+........ -.-...+.++..+..|+++.|+++.+.-. ++|+. .--.|+.+-+ -..+...|...-
T Consensus 174 r~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 174 RHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 8777666554322 23456778888999999999999998654 44443 1122222211 123566676666
Q ss_pred HHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHH------Hh
Q 037236 663 EKMLALGHKPDTFT-FVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLI------IE 735 (953)
Q Consensus 663 ~~m~~~g~~P~~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~------~~ 735 (953)
.+..+ +.||-+. -..-..++.+.|++.++-.+++.+-+ ..|.+..+. ...+.|.|+. +++-+ ++
T Consensus 253 ~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK---~ePHP~ia~--lY~~ar~gdt--a~dRlkRa~~L~s 323 (531)
T COG3898 253 LEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWK---AEPHPDIAL--LYVRARSGDT--ALDRLKRAKKLES 323 (531)
T ss_pred HHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHh---cCCChHHHH--HHHHhcCCCc--HHHHHHHHHHHHh
Confidence 66666 6787644 44456788999999999999999865 566655443 2234555543 22222 23
Q ss_pred CCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhc-CCchHHHHHH
Q 037236 736 MPEEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGS-EKWDDVRMMR 799 (953)
Q Consensus 736 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~-g~~~~a~~~~ 799 (953)
|. +.+....-++..+...-|++-.|....+.+...+| ..+.|.+|+++-... |+-.++....
T Consensus 324 lk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~p-res~~lLlAdIeeAetGDqg~vR~wl 386 (531)
T COG3898 324 LK-PNNAESSLAVAEAALDAGEFSAARAKAEAAAREAP-RESAYLLLADIEEAETGDQGKVRQWL 386 (531)
T ss_pred cC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCc-hhhHHHHHHHHHhhccCchHHHHHHH
Confidence 32 34566667777788889999999999999999999 566888999987766 8777665543
No 172
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.26 E-value=0.0023 Score=54.14 Aligned_cols=89 Identities=20% Similarity=0.237 Sum_probs=49.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHH
Q 037236 642 WNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDM 719 (953)
Q Consensus 642 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~ 719 (953)
|..+...+...|++++|+..|+++.+. .| +...+..+...+...|++++|.++|+...+ ..|. ...+..+...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~ 77 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALE---LDPDNAKAYYNLGLA 77 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCcchhHHHHHHHH
Confidence 445556666667777777777766663 34 334555566666666666666666666543 2222 2344444445
Q ss_pred HhhcCCHHHHHHHHHh
Q 037236 720 LGRAGKLDDAFKLIIE 735 (953)
Q Consensus 720 l~~~g~~~eA~~~~~~ 735 (953)
+...|++++|.+.+++
T Consensus 78 ~~~~~~~~~a~~~~~~ 93 (100)
T cd00189 78 YYKLGKYEEALEAYEK 93 (100)
T ss_pred HHHHHhHHHHHHHHHH
Confidence 5555555555444443
No 173
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.25 E-value=0.0031 Score=60.86 Aligned_cols=80 Identities=18% Similarity=0.118 Sum_probs=55.8
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCCC-CCC----hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHH
Q 037236 712 HYACVVDMLGRAGKLDDAFKLIIEMPE-EAD----AGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIY 786 (953)
Q Consensus 712 ~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 786 (953)
.+..+...|.+.|++++|.+.+++... .|+ ...|..+...+...|+++.|...+++++++.|+++..+..++.+|
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 344445555555555555555554431 111 356777777788888888888888888888898888888888888
Q ss_pred HhcCC
Q 037236 787 AGSEK 791 (953)
Q Consensus 787 ~~~g~ 791 (953)
...|+
T Consensus 117 ~~~g~ 121 (172)
T PRK02603 117 HKRGE 121 (172)
T ss_pred HHcCC
Confidence 88777
No 174
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.24 E-value=0.0017 Score=62.41 Aligned_cols=91 Identities=12% Similarity=-0.052 Sum_probs=67.9
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CC----ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHH
Q 037236 710 LEHYACVVDMLGRAGKLDDAFKLIIEMPE-EA----DAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSN 784 (953)
Q Consensus 710 ~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 784 (953)
...|..++..+...|++++|+..+++... .| .+.+|..+...+...|+.+.|...++++++++|....++..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 34455556666666777777777665531 12 23478888888899999999999999999999999999999999
Q ss_pred HHH-------hcCCchHHHHHHH
Q 037236 785 IYA-------GSEKWDDVRMMRQ 800 (953)
Q Consensus 785 ~y~-------~~g~~~~a~~~~~ 800 (953)
+|. ..|++++|...++
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHH
Confidence 988 7888886666544
No 175
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.21 E-value=0.00065 Score=53.76 Aligned_cols=51 Identities=18% Similarity=0.366 Sum_probs=38.6
Q ss_pred hcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 754 TYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 754 ~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
..|+++.|...++++++.+|+++..+..++.+|.+.|++++|.++.+.+..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467777888888888888888888888888888888888888877765544
No 176
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.20 E-value=0.00056 Score=53.54 Aligned_cols=61 Identities=21% Similarity=0.298 Sum_probs=48.1
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCC-CC-ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 037236 716 VVDMLGRAGKLDDAFKLIIEMPE-EA-DAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKA 776 (953)
Q Consensus 716 lv~~l~~~g~~~eA~~~~~~~~~-~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~ 776 (953)
+...+.+.|++++|++.+++... .| ++.+|..+...+...|+++.|...++++++.+|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 45667788888888888887754 34 567888888889999999999999999999999875
No 177
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.20 E-value=0.021 Score=55.78 Aligned_cols=229 Identities=10% Similarity=-0.055 Sum_probs=154.4
Q ss_pred ccCCCCCcccHHHHHHHHHhcCCCHHHHHHHHHHhhc-CCCChhHHHHHHHHh-ccCCC--hhHHHHHHHHHhhhcCCCC
Q 037236 21 TNNASTEGLHFLQEITTLCEESKSLNKALSLLQENLH-NADLKEATGVLLQAC-GHEKD--IEIGKRVHELISASTQFSN 96 (953)
Q Consensus 21 ~~~~~~~~~~~~~~i~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~ll~~~-~~~~~--~~~a~~~~~~~~~~~~~~~ 96 (953)
+..+......|...+..+.+.. ..++|...+...-. +.|+-. |...-..+ .+.|+ +-..+-+|..+.+..|+
T Consensus 62 ~~~t~~~lq~wT~r~~~l~kLR-~~~~a~~EL~~f~~lD~pdl~-Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgn-- 137 (366)
T KOG2796|consen 62 TSHTTDSLQLWTVRLALLVKLR-LFQNAEMELEPFGNLDQPDLY-YEYYPHVYPGRRGSMVPFSMRILHAELQQYLGN-- 137 (366)
T ss_pred eccchhHHHHHHHHHHHHHHHh-hhHHHHhhhhhhccCCCccee-eeeccccCCCCcCccccHHHHHHHHHHHHhcCC--
Confidence 3344455667888888899888 88888887777665 444421 11111111 23444 23445677777733342
Q ss_pred CchhhhHHHHHHHhcCChhhHHHHhhcCCCC--Cc--------hhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcc
Q 037236 97 DFIINTRLITMYSLCGFPLDSRRVFDSLKTR--NL--------FQWNALVSGFTKNELYPDVLSIFVELLSDTELKPDNF 166 (953)
Q Consensus 97 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~--~~--------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~ 166 (953)
-++.|+..|.-...+++-...|+.=..| .+ ..-+.++..+.-.|.+.-.+.++.+.++ ...+.++.
T Consensus 138 ---pqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~-~~~e~~p~ 213 (366)
T KOG2796|consen 138 ---PQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIK-YYPEQEPQ 213 (366)
T ss_pred ---cHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHH-hCCcccHH
Confidence 3677888877777777777777653332 22 2346677777778888888999999988 66666777
Q ss_pred cHHHHHHHhhcCCChhhHhHHHHHHHHhCCCCCh-----hHHHHHHHHhhccCChHHHHHHhccCCCC---CeecHHHHH
Q 037236 167 TFPCVIKACGGIADVSFGSGVHGMAAKMGLIGDV-----FVSNALIAMYGKCAFVEEMVKLFEVMPER---NLVSWNSII 238 (953)
Q Consensus 167 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-----~~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li 238 (953)
....+.+.-.+.||.+.|...++.+.+..-..|. -+....-..|.-.+++..|...|++++.. |++.-|.-.
T Consensus 214 L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKA 293 (366)
T KOG2796|consen 214 LLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKA 293 (366)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHH
Confidence 7888888888999999999999988776433333 33444444566678899999999988864 445555444
Q ss_pred HHHHcCCCchHHHHHHHHh
Q 037236 239 CGSSENGFSCESFDLLIKM 257 (953)
Q Consensus 239 ~~~~~~g~~~~A~~l~~~m 257 (953)
-+..-.|+..+|++..+.|
T Consensus 294 LcllYlg~l~DAiK~~e~~ 312 (366)
T KOG2796|consen 294 LCLLYLGKLKDALKQLEAM 312 (366)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455578899999999998
No 178
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.10 E-value=0.0014 Score=52.78 Aligned_cols=55 Identities=16% Similarity=0.177 Sum_probs=46.2
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 750 RSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 750 ~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
..+...++++.|..+++++++++|+++..+..++.+|...|++++|.+.++..-+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4567788888888888888888888888888888888888888888887776654
No 179
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.08 E-value=0.045 Score=57.61 Aligned_cols=147 Identities=16% Similarity=0.185 Sum_probs=73.5
Q ss_pred HHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhc
Q 037236 615 IDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIH-GYGKEAIELFEKMLAL----GHKP--DTFTFVGILMACNHA 687 (953)
Q Consensus 615 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~----g~~P--~~~t~~~ll~a~~~~ 687 (953)
++.|.+.|++..|-+++.+ +...|... |++++|++.|++..+. | .| -..++..+...+...
T Consensus 101 ~~~y~~~G~~~~aA~~~~~-----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKE-----------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARL 168 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHH-----------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCcHHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHh
Confidence 4556666666666555443 45556666 7777777777776552 2 22 123455666677777
Q ss_pred CCHHHHHHHHHHHHHhcCCCC----Ch-hHHHHHHHHHhhcCCHHHHHHHHHhCCC-CC------ChhHHHHHHHHHHhc
Q 037236 688 GLVENGLKYFSQMQKLHAVKP----KL-EHYACVVDMLGRAGKLDDAFKLIIEMPE-EA------DAGIWSSLLRSCRTY 755 (953)
Q Consensus 688 g~~~~a~~~~~~m~~~~~~~p----~~-~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~------~~~~~~~ll~~~~~~ 755 (953)
|++++|.++|++.....--.| +. .+|-..+-++...|+...|.+.+++... .| .......|+.+|...
T Consensus 169 ~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~ 248 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEG 248 (282)
T ss_dssp T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhC
Confidence 777777777777754321111 11 2223333355556777777777766432 12 123455566655432
Q ss_pred C--ChhHHHHHHHHHhccCC
Q 037236 756 G--ALKMGEKVAKTLLELEP 773 (953)
Q Consensus 756 g--~~~~a~~~~~~~~~l~p 773 (953)
. .++.+..-++.+-.++|
T Consensus 249 D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 249 DVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp -CCCHHHHCHHHTTSS---H
T ss_pred CHHHHHHHHHHHcccCccHH
Confidence 2 33444444444444443
No 180
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.04 E-value=0.014 Score=66.45 Aligned_cols=130 Identities=12% Similarity=0.013 Sum_probs=96.4
Q ss_pred CCCHHHHHHHHHHHHhc--C---CHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhc--------CCHHHHHHHHHhC
Q 037236 671 KPDTFTFVGILMACNHA--G---LVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRA--------GKLDDAFKLIIEM 736 (953)
Q Consensus 671 ~P~~~t~~~ll~a~~~~--g---~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~--------g~~~eA~~~~~~~ 736 (953)
..|...|..++.+.... + ..+.|..+|+++++ +.|+ ...|..+..++... +++..+.+..++.
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 44778888888776543 2 37789999999987 7888 55566554444221 2344555555543
Q ss_pred C----CCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 737 P----EEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 737 ~----~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
. ...++.++..+.-.....|+++.|...++++++++| +..+|..++.+|...|+.++|...++....
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2 234567788887777788999999999999999999 578999999999999999999998766544
No 181
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.01 E-value=0.00065 Score=53.75 Aligned_cols=49 Identities=14% Similarity=0.245 Sum_probs=23.0
Q ss_pred hcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 037236 686 HAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMP 737 (953)
Q Consensus 686 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~ 737 (953)
..|++++|+++|+.+.+. .|+ ...+..++.+|.+.|++++|.++++++.
T Consensus 3 ~~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR---NPDNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred hccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345555555555555442 232 3444444555555555555555554443
No 182
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.99 E-value=0.61 Score=49.48 Aligned_cols=108 Identities=15% Similarity=0.124 Sum_probs=82.4
Q ss_pred HhhHHHHHHhcCChhHHHHHHHhcccCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccch
Q 037236 510 GISLLSLYMHCEKSSSARVLFDEMEDKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSAL 589 (953)
Q Consensus 510 ~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 589 (953)
.+..+.-+...|+...|.++-.+..-||-.-|-..+.+|+..++|++-.++... +-+++.|..++.+|.+.|..
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 334455566788899999999888888999999999999999999886665332 22458888899999988888
Q ss_pred HHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhh
Q 037236 590 RLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDR 633 (953)
Q Consensus 590 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 633 (953)
.+|..+...+ .+..-+.+|.++|++.+|.+.--+
T Consensus 254 ~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 254 KEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 8877766552 225668889999999988776443
No 183
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.93 E-value=0.018 Score=53.31 Aligned_cols=150 Identities=9% Similarity=0.026 Sum_probs=99.5
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC-CChhHHHHHHHHHhhcCCH
Q 037236 648 GHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVK-PKLEHYACVVDMLGRAGKL 726 (953)
Q Consensus 648 ~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~-p~~~~~~~lv~~l~~~g~~ 726 (953)
+..+.=+++...+-..+-.+ ..|....-..|..+....|+..||...|++... |+- -|....-.+..+....+++
T Consensus 65 a~~q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~ 140 (251)
T COG4700 65 ALQQKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEF 140 (251)
T ss_pred HHHHhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccH
Confidence 33344455555554444444 567666777788888888888888888887743 443 3456666677777778888
Q ss_pred HHHHHHHHhCCC-CC---ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 037236 727 DDAFKLIIEMPE-EA---DAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRM 802 (953)
Q Consensus 727 ~eA~~~~~~~~~-~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 802 (953)
.+|...+++... +| .+-..-.+...+...|..+.|+.+++.++.--| ++..-...+.+++++|+.+++..-...+
T Consensus 141 A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 141 AAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 888877776543 22 122334456667778888888888888888777 5566677778888888887776644333
No 184
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.93 E-value=0.019 Score=50.71 Aligned_cols=92 Identities=16% Similarity=0.203 Sum_probs=68.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCh-hHHHHHHHHH
Q 037236 644 AIIGGHGIHGYGKEAIELFEKMLALGHKPD--TFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKL-EHYACVVDML 720 (953)
Q Consensus 644 ~li~~~~~~g~~~~A~~l~~~m~~~g~~P~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~lv~~l 720 (953)
.+..++-..|+.++|+.+|++.++.|..+. ...+..+.+++...|++++|..+++.....++-.+.. .....+..++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 345677888999999999999999887664 3567788899999999999999999887754332212 2222344577
Q ss_pred hhcCCHHHHHHHHHh
Q 037236 721 GRAGKLDDAFKLIIE 735 (953)
Q Consensus 721 ~~~g~~~eA~~~~~~ 735 (953)
...|+.+||++.+-.
T Consensus 86 ~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 86 YNLGRPKEALEWLLE 100 (120)
T ss_pred HHCCCHHHHHHHHHH
Confidence 888999999887654
No 185
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.93 E-value=0.045 Score=57.62 Aligned_cols=119 Identities=16% Similarity=0.212 Sum_probs=78.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHH
Q 037236 645 IIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHA-GLVENGLKYFSQMQKLHAVKPK----LEHYACVVDM 719 (953)
Q Consensus 645 li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~~~~lv~~ 719 (953)
.+..|...|++..|-+++.+ +...|... |++++|+++|++..+.+..... ...+.-+..+
T Consensus 100 A~~~y~~~G~~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADL 164 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHH
Confidence 45667777777776665554 44567777 8999999999998776543333 4456677889
Q ss_pred HhhcCCHHHHHHHHHhCCC---C-C--ChhHHHHHHH---HHHhcCChhHHHHHHHHHhccCCCCcch
Q 037236 720 LGRAGKLDDAFKLIIEMPE---E-A--DAGIWSSLLR---SCRTYGALKMGEKVAKTLLELEPDKAEN 778 (953)
Q Consensus 720 l~~~g~~~eA~~~~~~~~~---~-~--~~~~~~~ll~---~~~~~g~~~~a~~~~~~~~~l~p~~~~~ 778 (953)
+.+.|++++|.++|++... . + ...+-..++. .+...||...|...+++..+.+|.-..+
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s 232 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASS 232 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTS
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 9999999999999987642 1 1 1112122222 3355689999999999999999965443
No 186
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.90 E-value=0.0024 Score=53.03 Aligned_cols=80 Identities=21% Similarity=0.356 Sum_probs=53.2
Q ss_pred cCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHH
Q 037236 652 HGYGKEAIELFEKMLALGH-KPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDA 729 (953)
Q Consensus 652 ~g~~~~A~~l~~~m~~~g~-~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA 729 (953)
.|+++.|+.+|+++.+... .|+...+..+..++.+.|++++|..+++. .+ ..|+ ......+..+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~---~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK---LDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT---HHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC---CCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 5788888888888888422 12344555678888888888888888876 22 3333 23334457778888888888
Q ss_pred HHHHHh
Q 037236 730 FKLIIE 735 (953)
Q Consensus 730 ~~~~~~ 735 (953)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 887764
No 187
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.85 E-value=0.095 Score=48.67 Aligned_cols=126 Identities=12% Similarity=0.038 Sum_probs=66.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHH
Q 037236 638 DVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVV 717 (953)
Q Consensus 638 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv 717 (953)
++..--.|..++...|+..+|...|++...--+.-|......+..+....+++.+|...++.+.+...-.-+++..-.+.
T Consensus 88 Tvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~a 167 (251)
T COG4700 88 TVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFA 167 (251)
T ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHH
Confidence 33334455666666666666666666665532233556666666666666666666666666644221111133344455
Q ss_pred HHHhhcCCHHHHHHHHHhCCC-CCChhHHHHHHHHHHhcCChhHHHH
Q 037236 718 DMLGRAGKLDDAFKLIIEMPE-EADAGIWSSLLRSCRTYGALKMGEK 763 (953)
Q Consensus 718 ~~l~~~g~~~eA~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~ 763 (953)
..|...|+.++|+.-|+.... -|++..---......++|+.+++..
T Consensus 168 R~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 168 RTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHH
Confidence 666666666666666655433 2443322222223344554444433
No 188
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.83 E-value=1 Score=50.54 Aligned_cols=302 Identities=14% Similarity=0.119 Sum_probs=138.5
Q ss_pred HHHHHhcCCcccHHHHhccCCCC-----ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccc
Q 037236 413 VVAYAKCGSEISAENVFHGMDSR-----TVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKS 487 (953)
Q Consensus 413 i~~y~~~g~~~~A~~~f~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 487 (953)
|.++.+.|++-...++++.-... -...|+.+...+.....+++|.+.|..-... ...+.++.+..+
T Consensus 767 ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~ecly~le~ 837 (1189)
T KOG2041|consen 767 IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQIECLYRLEL 837 (1189)
T ss_pred HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHHHHHHHHHh
Confidence 34445555555555544432211 1135556666565555666665555542210 112222222222
Q ss_pred cchhhHHHHHHHHhCCCCchhhHhhHHHHHHhcCChhHHHHHHHhcccCCcccHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 037236 488 LHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMEDKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSI 567 (953)
Q Consensus 488 ~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 567 (953)
++.-+.+ ...++.+....-.+.+|+...|.-++|.+.|-+-..|. +-+..|...++|.+|.++-++.+-
T Consensus 838 f~~LE~l-----a~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avelaq~~~l- 906 (1189)
T KOG2041|consen 838 FGELEVL-----ARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVELAQRFQL- 906 (1189)
T ss_pred hhhHHHH-----HHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHHHHhccc-
Confidence 2221111 11233445555566677777777777776665544332 234456666667777766555431
Q ss_pred CCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHH---HHHH
Q 037236 568 GVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKDKDVT---SWNA 644 (953)
Q Consensus 568 g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~---~~~~ 644 (953)
|...| ++.- .+-++ +. +..+ ---|.++.+.|+.-+|.+++.+|.++... .+.-
T Consensus 907 ---~qv~t---liak--------~aaql---l~------~~~~-~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr 962 (1189)
T KOG2041|consen 907 ---PQVQT---LIAK--------QAAQL---LA------DANH-MEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLR 962 (1189)
T ss_pred ---hhHHH---HHHH--------HHHHH---Hh------hcch-HHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHH
Confidence 21111 1110 01111 11 1111 12367788888888888888887632111 1111
Q ss_pred -----HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHH
Q 037236 645 -----IIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDM 719 (953)
Q Consensus 645 -----li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~ 719 (953)
++.++. ..+..++++-.++....|...|... +...|...++-++.+..-+ | ....|+-.|..-
T Consensus 963 ~KklYVL~AlL-vE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~Wr--g--AEAyHFmilAQr 1030 (1189)
T KOG2041|consen 963 LKKLYVLGALL-VENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILENTWR--G--AEAYHFMILAQR 1030 (1189)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhhh--h--HHHHHHHHHHHH
Confidence 111111 1233445555555555554433322 2234444444444443211 1 224556666666
Q ss_pred HhhcCCHHHHHHHHHhCCC----CCChhHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 037236 720 LGRAGKLDDAFKLIIEMPE----EADAGIWSSLLRSCRTYGALKMGEKVAKTLLE 770 (953)
Q Consensus 720 l~~~g~~~eA~~~~~~~~~----~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 770 (953)
-..-|+.+.|+.---.+.. -|...+++.|.-+......+-..-+++-++-.
T Consensus 1031 ql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe~ 1085 (1189)
T KOG2041|consen 1031 QLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEA 1085 (1189)
T ss_pred HHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHh
Confidence 6778888888765433321 24455555444333333333344444444433
No 189
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.83 E-value=0.56 Score=49.02 Aligned_cols=247 Identities=16% Similarity=0.124 Sum_probs=164.9
Q ss_pred cHHHHHHHHHh--cCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhcc--ccchHHHHHHHHHHHHcCCCCCccHH----
Q 037236 540 SWNTMIAGYSQ--NKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQ--LSALRLGKETHCYALKAILTNDAFVA---- 611 (953)
Q Consensus 540 ~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~---- 611 (953)
.|.+|-.++.. .|+...|.++-.+-.+. +..|...+..+|.+-.. .|+.+.+++-|+.|.. |+.+-
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGL 157 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGL 157 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhH
Confidence 35555555544 56777777666554432 45677777788876544 5899999999998876 33322
Q ss_pred HHHHHHHHhcCCHHHHHHHhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHH--HHHHHHHHH
Q 037236 612 CSIIDMYAKCGCLEQSRRVFDRLKD---KDVTSWNAIIGGHGIHGYGKEAIELFEKMLALG-HKPDTFT--FVGILMACN 685 (953)
Q Consensus 612 ~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~P~~~t--~~~ll~a~~ 685 (953)
..|.---.+.|..+.|...-++... .-...|.+.+...+..|+++.|+++.+.-++.. +.||..- -..|+.+-.
T Consensus 158 RgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA 237 (531)
T COG3898 158 RGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKA 237 (531)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Confidence 1222223467888888888877652 344578899999999999999999999876643 4555422 223333221
Q ss_pred h---cCCHHHHHHHHHHHHHhcCCCCChh-HHHHHHHHHhhcCCHHHHHHHHHhCCC-CCChhHHHHHHHHHHhcCChhH
Q 037236 686 H---AGLVENGLKYFSQMQKLHAVKPKLE-HYACVVDMLGRAGKLDDAFKLIIEMPE-EADAGIWSSLLRSCRTYGALKM 760 (953)
Q Consensus 686 ~---~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~ 760 (953)
. ..+...|...-.+. ..+.|+.. .-..-...|.+.|++.++-.+++.+-. +|.+.+|..+.. .+.|+...
T Consensus 238 ~s~ldadp~~Ar~~A~~a---~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~--ar~gdta~ 312 (531)
T COG3898 238 MSLLDADPASARDDALEA---NKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVR--ARSGDTAL 312 (531)
T ss_pred HHHhcCChHHHHHHHHHH---hhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHH--hcCCCcHH
Confidence 1 22345555554443 45888833 333345789999999999999998854 788888866553 45666443
Q ss_pred HH-HHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHH
Q 037236 761 GE-KVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRM 797 (953)
Q Consensus 761 a~-~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 797 (953)
.. +-.+++-++.|+|......++..-...|.+..|..
T Consensus 313 dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa 350 (531)
T COG3898 313 DRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARA 350 (531)
T ss_pred HHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHH
Confidence 32 34567778899999999999988888887766654
No 190
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.79 E-value=0.0044 Score=49.08 Aligned_cols=63 Identities=24% Similarity=0.312 Sum_probs=52.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 037236 638 DVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAG-LVENGLKYFSQMQK 702 (953)
Q Consensus 638 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g-~~~~a~~~~~~m~~ 702 (953)
+...|..+...+...|++++|+..|++.++ +.| +...+..+..++...| ++++|++.++..++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~--~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIE--LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHH--HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 566788888888899999999999999888 567 5567888888888888 68899988888765
No 191
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.77 E-value=0.0067 Score=62.85 Aligned_cols=128 Identities=6% Similarity=-0.026 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH---HhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--------CCCh
Q 037236 675 FTFVGILMACNHAGLVENGLKYFSQMQ---KLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--------EADA 742 (953)
Q Consensus 675 ~t~~~ll~a~~~~g~~~~a~~~~~~m~---~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--------~~~~ 742 (953)
..|-.|.+.|.-.|+++.|+...+.-. +.+|-... ...++.|...+.-.|+++.|.+.++.... ...+
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 345566666667788888887765432 33443333 45677788888888888888888765421 1234
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHhcc------CCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 037236 743 GIWSSLLRSCRTYGALKMGEKVAKTLLEL------EPDKAENYVLVSNIYAGSEKWDDVRMMRQRM 802 (953)
Q Consensus 743 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~l------~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 802 (953)
....+|.+.|....+++.|+....+=+.+ .-....++..|++.|...|..+.|..+...-
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 56667888888777888887776665443 1235567888888888888888887754443
No 192
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.75 E-value=0.073 Score=54.30 Aligned_cols=173 Identities=14% Similarity=0.099 Sum_probs=95.6
Q ss_pred HHHHHHHhcCCHHHHHHHhhhcCC--CC-HHH---HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHH
Q 037236 613 SIIDMYAKCGCLEQSRRVFDRLKD--KD-VTS---WNAIIGGHGIHGYGKEAIELFEKMLALGHKPD--TFTFVGILMAC 684 (953)
Q Consensus 613 ~li~~y~~~g~~~~A~~~~~~~~~--~~-~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~--~~t~~~ll~a~ 684 (953)
.....+.+.|++++|.+.|+.+.. |+ ... .-.++.+|.+.+++++|+..|++.++. .|+ ...+.....+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~~~~~a~Y~~g~ 114 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVLYMRGL 114 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCCchHHHHHHHHH
Confidence 344455566777777777777652 22 111 123455666777777777777777763 442 22333333333
Q ss_pred Hh--cC---------------C---HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhH
Q 037236 685 NH--AG---------------L---VENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAGI 744 (953)
Q Consensus 685 ~~--~g---------------~---~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~~~~ 744 (953)
++ .+ + ..+|...|+..++.+ |+ ..-..+|...+..+...-- .-
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~-------------S~ya~~A~~rl~~l~~~la-~~ 177 (243)
T PRK10866 115 TNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PN-------------SQYTTDATKRLVFLKDRLA-KY 177 (243)
T ss_pred hhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cC-------------ChhHHHHHHHHHHHHHHHH-HH
Confidence 21 11 1 123444444444433 22 1122233222221110000 00
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCCC---CcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 745 WSSLLRSCRTYGALKMGEKVAKTLLELEPD---KAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 745 ~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~---~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
--....-|.+.|++.-|..-++.+++--|+ .+.+...+.+.|...|..++|..+.+.+..
T Consensus 178 e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 178 ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 012334477788898999999999988776 455667888999999999999998876643
No 193
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.72 E-value=0.029 Score=57.60 Aligned_cols=65 Identities=20% Similarity=0.197 Sum_probs=41.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC
Q 037236 642 WNAIIGGHGIHGYGKEAIELFEKMLALGHKPDT----FTFVGILMACNHAGLVENGLKYFSQMQKLHAVKP 708 (953)
Q Consensus 642 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 708 (953)
|..-+..+...|++++|+..|+.+++. .|+. ..+..+..++...|++++|...|+.+++.+.-.|
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~ 214 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSP 214 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc
Confidence 333333335567777777777777773 5543 4566677777777777777777777766554433
No 194
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.71 E-value=0.31 Score=53.94 Aligned_cols=97 Identities=18% Similarity=0.220 Sum_probs=62.5
Q ss_pred HHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 037236 614 IIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENG 693 (953)
Q Consensus 614 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a 693 (953)
-..|+...|+.++|..+ +..+|-.+-++++-+++-. .+..+...+..-+-+...+.-|
T Consensus 709 AAEmLiSaGe~~KAi~i------------------~~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLA 766 (1081)
T KOG1538|consen 709 AAEMLISAGEHVKAIEI------------------CGDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLA 766 (1081)
T ss_pred HHHHhhcccchhhhhhh------------------hhcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchH
Confidence 34566667777776544 3344545555555444322 2445555555555666777788
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCCh
Q 037236 694 LKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPE-EADA 742 (953)
Q Consensus 694 ~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~~~ 742 (953)
.++|.+|-. ...++++....|+++||..+-++.|. .||.
T Consensus 767 aeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dV 806 (1081)
T KOG1538|consen 767 AEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDV 806 (1081)
T ss_pred HHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccc
Confidence 888887732 34678888999999999999998885 3443
No 195
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.65 E-value=0.017 Score=59.40 Aligned_cols=52 Identities=13% Similarity=0.063 Sum_probs=24.3
Q ss_pred HhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 037236 685 NHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEM 736 (953)
Q Consensus 685 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~ 736 (953)
...|++++|...|+.+++.+.-.+- ...+-.+..+|...|++++|...|+.+
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~v 206 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASV 206 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4445566666666655554322211 223334444445555555554444443
No 196
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.63 E-value=0.22 Score=48.96 Aligned_cols=175 Identities=10% Similarity=0.048 Sum_probs=115.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhhhcCC--CCH--------HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 037236 610 VACSIIDMYAKCGCLEQSRRVFDRLKD--KDV--------TSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVG 679 (953)
Q Consensus 610 ~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~--------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ 679 (953)
-+++|...|.-..-+++-...|+.-.. ..+ ..-+.++..+.-+|.+.-.+.++.+.++....-+......
T Consensus 138 pqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~ 217 (366)
T KOG2796|consen 138 PQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSG 217 (366)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHH
Confidence 345565555554445555555543332 122 2345677777788889999999999999543337777888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcC----CCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCC-C-ChhHHHHHHHHHH
Q 037236 680 ILMACNHAGLVENGLKYFSQMQKLHA----VKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPEE-A-DAGIWSSLLRSCR 753 (953)
Q Consensus 680 ll~a~~~~g~~~~a~~~~~~m~~~~~----~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~-~-~~~~~~~ll~~~~ 753 (953)
|.+.-.+.|+.+.|..+|+...+..+ +.-..-....+...|.-++++.+|...+.+++.. | |+...|+-.-...
T Consensus 218 Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcll 297 (366)
T KOG2796|consen 218 LGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLL 297 (366)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHH
Confidence 89999999999999999997754432 2222233333444566678889999999888763 2 3444443333334
Q ss_pred hcCChhHHHHHHHHHhccCCCCcchHHHHHH
Q 037236 754 TYGALKMGEKVAKTLLELEPDKAENYVLVSN 784 (953)
Q Consensus 754 ~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 784 (953)
-.|+...|.+..+.+.+..|.....-..+.|
T Consensus 298 Ylg~l~DAiK~~e~~~~~~P~~~l~es~~~n 328 (366)
T KOG2796|consen 298 YLGKLKDALKQLEAMVQQDPRHYLHESVLFN 328 (366)
T ss_pred HHHHHHHHHHHHHHHhccCCccchhhhHHHH
Confidence 4688889999999999998876555444433
No 197
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.62 E-value=0.003 Score=44.65 Aligned_cols=42 Identities=26% Similarity=0.544 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHH
Q 037236 743 GIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSN 784 (953)
Q Consensus 743 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 784 (953)
.+|..+..++...|+++.|+++++++++.+|+|+.++..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 468888999999999999999999999999999998887764
No 198
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.53 E-value=0.0059 Score=48.99 Aligned_cols=65 Identities=18% Similarity=0.291 Sum_probs=50.4
Q ss_pred HHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHH
Q 037236 718 DMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLV 782 (953)
Q Consensus 718 ~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l 782 (953)
.+|.+.+++++|.+.++.+.. +.++..|......+...|+++.|...++++++..|+++......
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 467777888888888877654 34566777788888889999999999999999999887655443
No 199
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.53 E-value=1.4 Score=49.49 Aligned_cols=219 Identities=13% Similarity=0.107 Sum_probs=99.8
Q ss_pred ChHHHHHHhccCCCCCeecHHHHHHHHHcCCCchHHHHHHHHhhhccCCCCCChhhHHHHHHhhhcCCCchHHHHHHHHH
Q 037236 215 FVEEMVKLFEVMPERNLVSWNSIICGSSENGFSCESFDLLIKMMGCEEGFIPDVATVVTVLPVCAGEGNVDLGILVHGLA 294 (953)
Q Consensus 215 ~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 294 (953)
.+++|.+..+.-|.| ..|..+.......-.++.|...|-+.- .-.|++.- ..-..+|..-
T Consensus 678 gledA~qfiEdnPHp--rLWrllAe~Al~Kl~l~tAE~AFVrc~-dY~Gik~v-----------------krl~~i~s~~ 737 (1189)
T KOG2041|consen 678 GLEDAIQFIEDNPHP--RLWRLLAEYALFKLALDTAEHAFVRCG-DYAGIKLV-----------------KRLRTIHSKE 737 (1189)
T ss_pred chHHHHHHHhcCCch--HHHHHHHHHHHHHHhhhhHhhhhhhhc-cccchhHH-----------------HHhhhhhhHH
Confidence 467777776665543 456666666566666666666665551 11233210 0001111111
Q ss_pred HHhCCCCCchHHHHHHHhhHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHhccCCCCCc----
Q 037236 295 VKLGLTRELMVNNALVDMYAKCGFLSEAQILFDKNNNKNVVSWNTIIGAFSMAGDVCGTFDLLRKMQMKEEEMKPN---- 370 (953)
Q Consensus 295 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~p~---- 370 (953)
.+ .+=|.+ -.|++++|++++-.+..+|. -|..+.+.|++-...++++. .| ...|
T Consensus 738 ~q----------~aei~~--~~g~feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~---g~--~d~dD~~~ 795 (1189)
T KOG2041|consen 738 QQ----------RAEISA--FYGEFEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRN---GG--SDDDDEGK 795 (1189)
T ss_pred HH----------hHhHhh--hhcchhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHc---cC--CCcchHHH
Confidence 11 011111 13556666666666665553 23444455555555444432 11 1111
Q ss_pred hhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCcccHHHHhccCCCCChhhHHHHHHHHHhc
Q 037236 371 EVTVLNVLTSCSEKSELLSLKELHGYSLRHGFDNDELVANAFVVAYAKCGSEISAENVFHGMDSRTVSSWNALICGYAQN 450 (953)
Q Consensus 371 ~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~ 450 (953)
...+..+-..+.....++.|.+.+..... ....+.+|.+..++++-+.+-..+++. ....-.|...+...
T Consensus 796 e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~~ecly~le~f~~LE~la~~Lpe~-s~llp~~a~mf~sv 865 (1189)
T KOG2041|consen 796 EDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQIECLYRLELFGELEVLARTLPED-SELLPVMADMFTSV 865 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhHHHHHHHHHhhhhHHHHHHhcCcc-cchHHHHHHHHHhh
Confidence 12233333333333344444443332110 112445555555555555555555543 33445566666677
Q ss_pred CChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccchhhHH
Q 037236 451 GDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEI 494 (953)
Q Consensus 451 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i 494 (953)
|..++|.+.|-+--. | ...+..|..++++.+|.++
T Consensus 866 GMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQW~~avel 900 (1189)
T KOG2041|consen 866 GMCDQAVEAYLRRSL----P-----KAAVHTCVELNQWGEAVEL 900 (1189)
T ss_pred chHHHHHHHHHhccC----c-----HHHHHHHHHHHHHHHHHHH
Confidence 777777666543211 1 1234455555555555544
No 200
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.39 Score=50.64 Aligned_cols=125 Identities=15% Similarity=0.158 Sum_probs=66.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHH
Q 037236 647 GGHGIHGYGKEAIELFEKMLALGHKP-----DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDML 720 (953)
Q Consensus 647 ~~~~~~g~~~~A~~l~~~m~~~g~~P-----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l 720 (953)
.-..+.|++.+|.+.|.+.+. +.| +...|.....+..+.|+.++|+.-.+...+ +.|. +..|-.-..++
T Consensus 257 N~~fk~G~y~~A~E~Yteal~--idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~syikall~ra~c~ 331 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALN--IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSSYIKALLRRANCH 331 (486)
T ss_pred hhHhhccchhHHHHHHHHhhc--CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHHHHHHHHHHHHHH
Confidence 334566667777777776665 334 334455555566666777777666665543 4444 33333333444
Q ss_pred hhcCCHHHHHHHHHhCCC-CCCh------------------hHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 037236 721 GRAGKLDDAFKLIIEMPE-EADA------------------GIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKA 776 (953)
Q Consensus 721 ~~~g~~~eA~~~~~~~~~-~~~~------------------~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~ 776 (953)
.-.++|++|.+-+++... +.+. .-|-.+++.-+...+.+......+.++..+|+-.
T Consensus 332 l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~ 406 (486)
T KOG0550|consen 332 LALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKN 406 (486)
T ss_pred HHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcC
Confidence 445566666666654432 1111 1244444444444455555555566666677643
No 201
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.41 E-value=0.019 Score=62.50 Aligned_cols=118 Identities=12% Similarity=0.012 Sum_probs=90.4
Q ss_pred CCCchhhhHHHHHHHhcCChhhHHHHhhcCCC-CC-----chhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcccH
Q 037236 95 SNDFIINTRLITMYSLCGFPLDSRRVFDSLKT-RN-----LFQWNALVSGFTKNELYPDVLSIFVELLSDTELKPDNFTF 168 (953)
Q Consensus 95 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~ 168 (953)
+.+..-...+++......+++++..++.+.+. |+ ..|..++|+.|...|..++++.++..=.. .|+-||.+||
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~-yGiF~D~~s~ 141 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQ-YGIFPDNFSF 141 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhh-cccCCChhhH
Confidence 34444455566666677777778887777653 21 23567899999999999999999988888 8999999999
Q ss_pred HHHHHHhhcCCChhhHhHHHHHHHHhCCCCChhHHHHHHHHhhcc
Q 037236 169 PCVIKACGGIADVSFGSGVHGMAAKMGLIGDVFVSNALIAMYGKC 213 (953)
Q Consensus 169 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 213 (953)
+.++..+.+.|++..|.++...|..++.-.++.++..-+..+.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999988888888777777666666555554
No 202
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.41 E-value=0.01 Score=63.82 Aligned_cols=64 Identities=22% Similarity=0.041 Sum_probs=47.6
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcch---HHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 741 DAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAEN---YVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 741 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~---~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
++..|..+..++...|++++|...++++++++|+++.+ |..++.+|...|+.++|...+++.-+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45677777777777888888888888888888877744 77788888888888888775555544
No 203
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=0.019 Score=60.25 Aligned_cols=128 Identities=13% Similarity=0.081 Sum_probs=91.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCh
Q 037236 679 GILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSCRTYGAL 758 (953)
Q Consensus 679 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 758 (953)
.-.+.+.+.|++..|..-|++++......- .-+.+|..... ..-...+.+|...|.+.+++
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~--------------~~~~ee~~~~~-----~~k~~~~lNlA~c~lKl~~~ 273 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRR--------------SFDEEEQKKAE-----ALKLACHLNLAACYLKLKEY 273 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhccc--------------cCCHHHHHHHH-----HHHHHHhhHHHHHHHhhhhH
Confidence 446677788888888888777654221110 00111111111 11224556666677888899
Q ss_pred hHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCccCCceeEEEeCCEEEEEeeCCCCCccHHHH
Q 037236 759 KMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKERGLQKEAGCSWIELGGNIHSFVVGDNMHPEWEEI 838 (953)
Q Consensus 759 ~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~d~~hp~~~~i 838 (953)
..|.....++++++|+|..+.+.-+.+|...|.++.|...++++.+ ..|..+.|
T Consensus 274 ~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--------------------------~~P~Nka~ 327 (397)
T KOG0543|consen 274 KEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK--------------------------LEPSNKAA 327 (397)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--------------------------hCCCcHHH
Confidence 9999999999999999999999999999999999999998888876 45777888
Q ss_pred HHHHHHHHHHHHh
Q 037236 839 RGMWGRLEEQISK 851 (953)
Q Consensus 839 ~~~l~~l~~~~~~ 851 (953)
...|..|..++++
T Consensus 328 ~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 328 RAELIKLKQKIRE 340 (397)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888777764
No 204
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.39 E-value=0.29 Score=52.33 Aligned_cols=161 Identities=12% Similarity=0.086 Sum_probs=105.3
Q ss_pred HHHHHHHHhcCCHHHHHHHhhhcCCC-------CHHHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 037236 612 CSIIDMYAKCGCLEQSRRVFDRLKDK-------DVTSWNAIIGGHGI---HGYGKEAIELFEKMLALGHKPDTFTFVGIL 681 (953)
Q Consensus 612 ~~li~~y~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll 681 (953)
-.|+-.|....+++...++.+.+... ....--...-++.+ .|+.++|+.++..+....-.++..||..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 34455678888888888888888732 12222234455666 789999999999977666677888888777
Q ss_pred HHHHh---------cCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHH----HHHHHH---Hh-----CCC--
Q 037236 682 MACNH---------AGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLD----DAFKLI---IE-----MPE-- 738 (953)
Q Consensus 682 ~a~~~---------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~----eA~~~~---~~-----~~~-- 738 (953)
..|-. ....++|+..|.+. +.++|+..+--.++-++.-+|.-. |..++. .. -..
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 76531 23477888888755 457776433333344444455322 222222 11 111
Q ss_pred CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 037236 739 EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDK 775 (953)
Q Consensus 739 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~ 775 (953)
..|--...+++.++...||.+.|.+++++++.+.|..
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 2444556899999999999999999999999997743
No 205
>PRK11906 transcriptional regulator; Provisional
Probab=96.34 E-value=0.37 Score=52.34 Aligned_cols=158 Identities=9% Similarity=0.075 Sum_probs=107.4
Q ss_pred HHH--HHHHHHHHhc-----CChHHHHHHHHHHHH-CCCCCCH-HHHHHHHHHHHh---------cCCHHHHHHHHHHHH
Q 037236 640 TSW--NAIIGGHGIH-----GYGKEAIELFEKMLA-LGHKPDT-FTFVGILMACNH---------AGLVENGLKYFSQMQ 701 (953)
Q Consensus 640 ~~~--~~li~~~~~~-----g~~~~A~~l~~~m~~-~g~~P~~-~t~~~ll~a~~~---------~g~~~~a~~~~~~m~ 701 (953)
..| ..++.|.... -..+.|+.+|.+... +.++|+. ..|..+..++.. .....+|.++-++.+
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 456 5555554431 135778889999882 2267754 444444333321 233456777776665
Q ss_pred HhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCC-hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcch
Q 037236 702 KLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE-EAD-AGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAEN 778 (953)
Q Consensus 702 ~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~ 778 (953)
+ +.|+ ......+..++.-.|+++.|..+|++... .|| +.+|......+.-.|+.+.|.+.++++++++|....+
T Consensus 332 e---ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 D---ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred h---cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 5 5554 66666777777888889999999998764 554 5688888888889999999999999999999987776
Q ss_pred HHHHHHH-HHhcCCchHHHHHHH
Q 037236 779 YVLVSNI-YAGSEKWDDVRMMRQ 800 (953)
Q Consensus 779 ~~~l~~~-y~~~g~~~~a~~~~~ 800 (953)
-+.--++ .+--...++|.+++-
T Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~ 431 (458)
T PRK11906 409 VVIKECVDMYVPNPLKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHHcCCchhhhHHHHh
Confidence 6655555 333445677777653
No 206
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.29 E-value=0.025 Score=49.97 Aligned_cols=82 Identities=16% Similarity=0.069 Sum_probs=49.7
Q ss_pred HHHhhcCCHHHHHHHHHhCCCC----C-ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCC---CcchHHHHHHHHHhc
Q 037236 718 DMLGRAGKLDDAFKLIIEMPEE----A-DAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPD---KAENYVLVSNIYAGS 789 (953)
Q Consensus 718 ~~l~~~g~~~eA~~~~~~~~~~----~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~---~~~~~~~l~~~y~~~ 789 (953)
.++-..|+.++|+.++++.... + -...+-.+.+.++..|++++|..++++.++-.|+ +......++-.+...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 3344445555555555443321 1 1224445666677777777777777777776676 666666777777778
Q ss_pred CCchHHHHHH
Q 037236 790 EKWDDVRMMR 799 (953)
Q Consensus 790 g~~~~a~~~~ 799 (953)
|+++||....
T Consensus 89 gr~~eAl~~~ 98 (120)
T PF12688_consen 89 GRPKEALEWL 98 (120)
T ss_pred CCHHHHHHHH
Confidence 8888877743
No 207
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.28 E-value=0.09 Score=55.12 Aligned_cols=125 Identities=14% Similarity=0.058 Sum_probs=68.7
Q ss_pred hHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHh-cCCHHHHHHHhhhcC---CCCHHHHHHHHHHHH
Q 037236 575 SIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAK-CGCLEQSRRVFDRLK---DKDVTSWNAIIGGHG 650 (953)
Q Consensus 575 t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~-~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~ 650 (953)
+|..++..+-+.+..+.++.+|..+.+.+ ..+..+|.....+-.. .++.+.|.++|+... ..+...|...+.-+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 34445555555555555555555555322 1233444444444333 344444777777665 456666777777677
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037236 651 IHGYGKEAIELFEKMLALGHKPDT----FTFVGILMACNHAGLVENGLKYFSQMQK 702 (953)
Q Consensus 651 ~~g~~~~A~~l~~~m~~~g~~P~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 702 (953)
..|+.+.|..+|++.+.. .|.. ..|...+.-=.+.|+++...++.+++.+
T Consensus 82 ~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 82 KLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777777777776664 3322 3566666666666777777777666655
No 208
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.26 E-value=0.019 Score=49.65 Aligned_cols=89 Identities=21% Similarity=0.187 Sum_probs=73.6
Q ss_pred HHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC----cchHHHHHHHHHhcCC
Q 037236 718 DMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDK----AENYVLVSNIYAGSEK 791 (953)
Q Consensus 718 ~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~----~~~~~~l~~~y~~~g~ 791 (953)
-++...|++++|++.|.+... +.++..||+-..+++..|+.+.|..-+++++++--+. -.+|+..+.+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 357788899999998877643 4578899999999999999999999999999985433 2467889999999999
Q ss_pred chHHHHHHHHHHHCC
Q 037236 792 WDDVRMMRQRMKERG 806 (953)
Q Consensus 792 ~~~a~~~~~~m~~~~ 806 (953)
-+.|..-+....+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 999999888777655
No 209
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.20 E-value=0.1 Score=57.02 Aligned_cols=121 Identities=10% Similarity=0.002 Sum_probs=87.9
Q ss_pred cCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHc--CCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC----CCCHH
Q 037236 567 IGVQPCEISIVSILSACSQLSALRLGKETHCYALKA--ILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK----DKDVT 640 (953)
Q Consensus 567 ~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~ 640 (953)
.+...+.+.+..+++.+....+++.+..++-..... ....-..+..++|..|.+.|..+++..++..=. -||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 344567777778888888877788777776666554 232233444588888888888888888877644 37888
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 037236 641 SWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHA 687 (953)
Q Consensus 641 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~ 687 (953)
++|.++..+.+.|++..|.++..+|..++...+..|+..-+.+|.+-
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888888888888888777666777777666666654
No 210
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.12 E-value=3.6 Score=47.13 Aligned_cols=336 Identities=11% Similarity=0.034 Sum_probs=165.1
Q ss_pred CCCchhhHHH-----HHHHhccccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCc---ccHHHHhccCCC--CC
Q 037236 367 MKPNEVTVLN-----VLTSCSEKSELLSLKELHGYSLRHGFDNDELVANAFVVAYAKCGSE---ISAENVFHGMDS--RT 436 (953)
Q Consensus 367 ~~p~~~t~~~-----ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~---~~A~~~f~~~~~--~~ 436 (953)
++.+..-|.. ++.-+...+.+..|.++-..+...-... ..++.....-+.+..+. +-+.++=+++.. .+
T Consensus 428 IplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~ 506 (829)
T KOG2280|consen 428 IPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTP 506 (829)
T ss_pred ccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCC
Confidence 5554444433 4555555666666666665553221111 45666666666665332 223333344444 45
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHhhhCCC----CCCcchHHHHHHhhccccccchhhHHHHHHHHhCCCCchhhHhh
Q 037236 437 VSSWNALICGYAQNGDHLKALDYFLQMTHSDL----EPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGIS 512 (953)
Q Consensus 437 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~ 512 (953)
.++|..+..-..+.|+.+-|..+++.=...+- -.+..-+...+.-+...|+.+....+.-++...-..
T Consensus 507 ~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~-------- 578 (829)
T KOG2280|consen 507 GISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNR-------- 578 (829)
T ss_pred ceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHH--------
Confidence 67888888888888998888877764222110 011122333344444555555554444443322100
Q ss_pred HHHHHHhcCChhHHHHHHHhccc-CCcccHHHHHHHHHhcCChhHHHHHHH--HHH----HcCCCCChhhHHHHHHHhcc
Q 037236 513 LLSLYMHCEKSSSARVLFDEMED-KSLVSWNTMIAGYSQNKLPVEAIVLFR--RMF----SIGVQPCEISIVSILSACSQ 585 (953)
Q Consensus 513 li~~y~~~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~--~m~----~~g~~p~~~t~~~ll~a~~~ 585 (953)
.+.+....+.-.|..+|.+..+ .|..+ +-+.|- .++-.+++.-|. ... ..|..|+ ....-++|++
T Consensus 579 -s~l~~~l~~~p~a~~lY~~~~r~~~~~~---l~d~y~-q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~ 650 (829)
T KOG2280|consen 579 -SSLFMTLRNQPLALSLYRQFMRHQDRAT---LYDFYN-QDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAK 650 (829)
T ss_pred -HHHHHHHHhchhhhHHHHHHHHhhchhh---hhhhhh-cccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhh
Confidence 0001111222333344433322 11110 111111 222222222221 100 0122232 2233344444
Q ss_pred ccchHHHHHH-------H---HHHH-HcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC
Q 037236 586 LSALRLGKET-------H---CYAL-KAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGY 654 (953)
Q Consensus 586 ~~~~~~a~~~-------~---~~~~-~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 654 (953)
......+.+. + ..+. +.|.....-+.+--+.-+...|+..+|.++-.+..-||-..|---+.+++..++
T Consensus 651 sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~k 730 (829)
T KOG2280|consen 651 SKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKK 730 (829)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhh
Confidence 3332111111 1 1111 122222222233334445557888888888888887777777777888888888
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHH
Q 037236 655 GKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLII 734 (953)
Q Consensus 655 ~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~ 734 (953)
+++-+++-+.+. + ++-|.-...+|.+.|+.+||.+++.+.. + +.-.+.+|.+.|++.+|.++--
T Consensus 731 weeLekfAkskk-----s-PIGy~PFVe~c~~~~n~~EA~KYiprv~------~----l~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 731 WEELEKFAKSKK-----S-PIGYLPFVEACLKQGNKDEAKKYIPRVG------G----LQEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HHHHHHHHhccC-----C-CCCchhHHHHHHhcccHHHHhhhhhccC------C----hHHHHHHHHHhccHHHHHHHHH
Confidence 876665554432 1 4556666778888888888888875441 1 1146778888888888877654
Q ss_pred h
Q 037236 735 E 735 (953)
Q Consensus 735 ~ 735 (953)
+
T Consensus 795 ~ 795 (829)
T KOG2280|consen 795 E 795 (829)
T ss_pred H
Confidence 3
No 211
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.07 E-value=0.64 Score=50.50 Aligned_cols=63 Identities=11% Similarity=0.031 Sum_probs=38.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037236 638 DVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDT----FTFVGILMACNHAGLVENGLKYFSQMQK 702 (953)
Q Consensus 638 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 702 (953)
+...|+.+..+|...|++++|+..|++.++ +.|+. .+|..+..+|.+.|+.++|+..++++++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666666666666666666666666666 45542 2466666666666666666666666554
No 212
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.07 E-value=2.6 Score=45.11 Aligned_cols=90 Identities=17% Similarity=0.143 Sum_probs=46.2
Q ss_pred hhHHHHHHHhccccchHHHHHHHHHHHHcC-CCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC--CCCHHHH-HHHHHHH
Q 037236 574 ISIVSILSACSQLSALRLGKETHCYALKAI-LTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK--DKDVTSW-NAIIGGH 649 (953)
Q Consensus 574 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~-~~li~~~ 649 (953)
..|...+++..+..-++.|+.+|..+.+.+ +.+++.++++++..|+ .|+...|.++|+--. -+|...| +-.+.-+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL 476 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFL 476 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 345555555555556666666666666665 4456666666665554 355555555555322 2232222 2233333
Q ss_pred HhcCChHHHHHHHHH
Q 037236 650 GIHGYGKEAIELFEK 664 (953)
Q Consensus 650 ~~~g~~~~A~~l~~~ 664 (953)
...|+-+.|..+|+.
T Consensus 477 i~inde~naraLFet 491 (660)
T COG5107 477 IRINDEENARALFET 491 (660)
T ss_pred HHhCcHHHHHHHHHH
Confidence 444555555555553
No 213
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.03 E-value=1.2 Score=45.39 Aligned_cols=54 Identities=9% Similarity=-0.079 Sum_probs=31.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHH
Q 037236 681 LMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLII 734 (953)
Q Consensus 681 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~ 734 (953)
..-|.+.|.+..|..-|+.+++.+.-.|. .+....|+++|.+.|..++|.+...
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 34455666666666666666665554444 4455555666666666666655443
No 214
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.00 E-value=0.059 Score=51.89 Aligned_cols=97 Identities=19% Similarity=0.269 Sum_probs=72.2
Q ss_pred HHHhhhc--CCCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-------------
Q 037236 628 RRVFDRL--KDKDVTSWNAIIGGHGIH-----GYGKEAIELFEKMLALGHKPDTFTFVGILMACNHA------------- 687 (953)
Q Consensus 628 ~~~~~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~------------- 687 (953)
...|+.. ..+|-.+|..++..|.+. |..+=....+..|.+-|+.-|..+|+.||+.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3445554 356777777777777643 66666777778888888888888888888765431
Q ss_pred ---CCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCC
Q 037236 688 ---GLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGK 725 (953)
Q Consensus 688 ---g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~ 725 (953)
.+-+-|++++++| +.+|+.||.+++..|++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qM-E~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQM-ENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHH-HHcCCCCcHHHHHHHHHHhccccH
Confidence 2345688999999 679999999999999999988775
No 215
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.94 E-value=0.24 Score=49.13 Aligned_cols=66 Identities=24% Similarity=0.230 Sum_probs=42.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC
Q 037236 644 AIIGGHGIHGYGKEAIELFEKMLALGHK-P-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK 709 (953)
Q Consensus 644 ~li~~~~~~g~~~~A~~l~~~m~~~g~~-P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 709 (953)
.....+...|++.+|++.|+++...... | -......++.++...|++++|...+++.++.++-.|.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~ 77 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK 77 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc
Confidence 3455567778888888888888874211 1 2344566777888888888888888888777766665
No 216
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=95.93 E-value=3.8 Score=45.86 Aligned_cols=183 Identities=13% Similarity=0.065 Sum_probs=128.9
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHhhhcCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037236 607 DAFVACSIIDMYAKCGCLEQSRRVFDRLKDK---DVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMA 683 (953)
Q Consensus 607 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a 683 (953)
+...|..-++.-.+.|+.+.+.-+|++..-| =...|--.+.-....|+.+-|-.++....+--++-.+.+-..-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 4566777777778889999999999988744 2335655555555558888888777766664333345555555556
Q ss_pred HHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHH---HHHHhCCC-CCChhHHHHHHH-----HHH
Q 037236 684 CNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAF---KLIIEMPE-EADAGIWSSLLR-----SCR 753 (953)
Q Consensus 684 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~---~~~~~~~~-~~~~~~~~~ll~-----~~~ 753 (953)
+...|+++.|..+++.+.+.+ |+ +..-.--+.+..|.|.++.+. +++..... .-+..+...+.- -+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 778899999999999997754 76 444444467788899999988 66654432 233333322222 145
Q ss_pred hcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCc
Q 037236 754 TYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKW 792 (953)
Q Consensus 754 ~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~ 792 (953)
..++.+.|..++.++.+..|++...|..+.++....+-.
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~ 491 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQPSG 491 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcc
Confidence 578999999999999999999999999999988777633
No 217
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=95.89 E-value=0.048 Score=46.37 Aligned_cols=81 Identities=11% Similarity=0.043 Sum_probs=65.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhhCCC-CCCcchHHHHHHhhcccc--------ccchhhHHHHHHHHhCCCCchhh
Q 037236 439 SWNALICGYAQNGDHLKALDYFLQMTHSDL-EPDLFSIGSLILACTHLK--------SLHRGKEIHGFVIRNGLEGDSFT 509 (953)
Q Consensus 439 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~i~~~~~~~g~~~~~~~ 509 (953)
+-...|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+++.++..++.|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 344567777777999999999999999999 999999999999877643 34456777888888888888888
Q ss_pred HhhHHHHHHh
Q 037236 510 GISLLSLYMH 519 (953)
Q Consensus 510 ~~~li~~y~~ 519 (953)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 8888877654
No 218
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.85 E-value=0.12 Score=48.17 Aligned_cols=107 Identities=17% Similarity=0.225 Sum_probs=70.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCC--CChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhH
Q 037236 683 ACNHAGLVENGLKYFSQMQKLHAVK--PKLEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSCRTYGALKM 760 (953)
Q Consensus 683 a~~~~g~~~~a~~~~~~m~~~~~~~--p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 760 (953)
.....|+.+.+...++.+...+.=. |+... ..-.....+.++++ -..++..++..+...|+++.
T Consensus 15 ~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~----~~~~~~~l~~~~~~~~~~~~ 80 (146)
T PF03704_consen 15 AAARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLREL----YLDALERLAEALLEAGDYEE 80 (146)
T ss_dssp HHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHH----HHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHH----HHHHHHHHHHHHHhccCHHH
Confidence 3455677778887777776654211 11111 11122222222221 12355667777888999999
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 037236 761 GEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMK 803 (953)
Q Consensus 761 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 803 (953)
+...+++++.++|-|...|..+..+|...|+..+|.++++.++
T Consensus 81 a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 81 ALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887774
No 219
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.85 E-value=2.3 Score=42.69 Aligned_cols=193 Identities=20% Similarity=0.205 Sum_probs=139.1
Q ss_pred ccHHHHHHHHHHhcCCHHHHHHHhhhcC-----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037236 608 AFVACSIIDMYAKCGCLEQSRRVFDRLK-----DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILM 682 (953)
Q Consensus 608 ~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~ 682 (953)
..........+...+.+..+...+.... ......+......+...+++..+.+.+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 4566667777788888888887777653 3445566677777778888889999998888743333 122222333
Q ss_pred -HHHhcCCHHHHHHHHHHHHHhcCCCC----ChhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CC--ChhHHHHHHHHHHh
Q 037236 683 -ACNHAGLVENGLKYFSQMQKLHAVKP----KLEHYACVVDMLGRAGKLDDAFKLIIEMPE-EA--DAGIWSSLLRSCRT 754 (953)
Q Consensus 683 -a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~--~~~~~~~ll~~~~~ 754 (953)
++...|+++++...++.... ..| ....+......+...++.++|...+.+... .+ ....+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 78889999999999988843 333 234444445556778899999988877654 23 35778888888888
Q ss_pred cCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 755 YGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 755 ~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
.++.+.+...+..+++..|.....+..++..+...|.++++.........
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88999999999999999988777778888888877778888876665544
No 220
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=95.84 E-value=0.053 Score=46.14 Aligned_cols=78 Identities=18% Similarity=0.037 Sum_probs=63.5
Q ss_pred HHHHHHHcCCCchHHHHHHHHhhhccCCC-CCChhhHHHHHHhhhcCC--------CchHHHHHHHHHHHhCCCCCchHH
Q 037236 236 SIICGSSENGFSCESFDLLIKMMGCEEGF-IPDVATVVTVLPVCAGEG--------NVDLGILVHGLAVKLGLTRELMVN 306 (953)
Q Consensus 236 ~li~~~~~~g~~~~A~~l~~~m~~~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~ 306 (953)
..|..+...+++..-..+|+.+ +..|+ .|+..+|+.+|.+.++.. .+...+.+++.++..++.|+..+|
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqsl--kRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSL--KRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHH--HhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 3455566679999999999999 88999 999999999999887554 234456788899999999999999
Q ss_pred HHHHHhhHh
Q 037236 307 NALVDMYAK 315 (953)
Q Consensus 307 ~~li~~~~~ 315 (953)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 998887765
No 221
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.79 E-value=0.062 Score=56.63 Aligned_cols=138 Identities=12% Similarity=0.026 Sum_probs=103.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcC
Q 037236 645 IIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAG 724 (953)
Q Consensus 645 li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g 724 (953)
-.+.|.+.|++..|...|++.+.. -+ +...-+.++..... . .-...+..|.-.|.+.+
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~--l~-----------~~~~~~~ee~~~~~-~--------~k~~~~lNlA~c~lKl~ 271 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSF--LE-----------YRRSFDEEEQKKAE-A--------LKLACHLNLAACYLKLK 271 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHH--hh-----------ccccCCHHHHHHHH-H--------HHHHHhhHHHHHHHhhh
Confidence 466788999999999999997762 11 11111113322221 1 12345667778888999
Q ss_pred CHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHH-HHHHHH
Q 037236 725 KLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDV-RMMRQR 801 (953)
Q Consensus 725 ~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a-~~~~~~ 801 (953)
++.+|++..++... ++|+-..---..+|...|+++.|+..++++++++|+|-.+..-|..+-.+..+.++. .++++.
T Consensus 272 ~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~ 351 (397)
T KOG0543|consen 272 EYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYAN 351 (397)
T ss_pred hHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988887764 567777878888999999999999999999999999999999999888888777777 447888
Q ss_pred HHH
Q 037236 802 MKE 804 (953)
Q Consensus 802 m~~ 804 (953)
|-.
T Consensus 352 mF~ 354 (397)
T KOG0543|consen 352 MFA 354 (397)
T ss_pred Hhh
Confidence 854
No 222
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.79 E-value=3.5 Score=47.17 Aligned_cols=334 Identities=11% Similarity=0.001 Sum_probs=167.1
Q ss_pred ccCCCCCChhhHHH-----HHHhhhcCCCchHHHHHHHHHHHhCCCCCchHHHHHHHhhHhcCC---hhHHHHHHhcCCC
Q 037236 260 CEEGFIPDVATVVT-----VLPVCAGEGNVDLGILVHGLAVKLGLTRELMVNNALVDMYAKCGF---LSEAQILFDKNNN 331 (953)
Q Consensus 260 ~~~g~~p~~~t~~~-----ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~f~~~~~ 331 (953)
..-|++.+..-|.. +|+-+...+.+..|.++-..+--.-... ..++.....-+.+..+ -+.+.++=+++..
T Consensus 424 ~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~ 502 (829)
T KOG2280|consen 424 VRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA 502 (829)
T ss_pred cccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcc
Confidence 35566666655543 4566666777777777766654222122 5677777777776532 2334444445555
Q ss_pred --CCcccHHHHHHHHHcCCChhHHHHHHHHHHhccCCCCCchh----------hHHHHHHHhccccchHHHHHHHHHHHH
Q 037236 332 --KNVVSWNTIIGAFSMAGDVCGTFDLLRKMQMKEEEMKPNEV----------TVLNVLTSCSEKSELLSLKELHGYSLR 399 (953)
Q Consensus 332 --~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~p~~~----------t~~~ll~~~~~~~~~~~a~~i~~~~~~ 399 (953)
...++|..+.+--.+.|+.+-|..+++ ..|+.. -+...+.-+...++.+...+++-++..
T Consensus 503 ~~~~~iSy~~iA~~Ay~~GR~~LA~kLle--------~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~ 574 (829)
T KOG2280|consen 503 KLTPGISYAAIARRAYQEGRFELARKLLE--------LEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKN 574 (829)
T ss_pred cCCCceeHHHHHHHHHhcCcHHHHHHHHh--------cCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 567888888888889999999988887 444432 244445555566666655555444433
Q ss_pred cCCCCchhHHHHHHHHHHhcCCcccHHHHhccCCC-CChhhHHHHHHHHHhcCChHHHHHHHH--Hhhh-CCCCCCcchH
Q 037236 400 HGFDNDELVANAFVVAYAKCGSEISAENVFHGMDS-RTVSSWNALICGYAQNGDHLKALDYFL--QMTH-SDLEPDLFSI 475 (953)
Q Consensus 400 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~--~m~~-~g~~p~~~t~ 475 (953)
.- +...+ .....+...|..++..... .|.. .+ ..+.+.++-.+++..|. .... .-+.+-....
T Consensus 575 ~~---~~s~l------~~~l~~~p~a~~lY~~~~r~~~~~---~l-~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l 641 (829)
T KOG2280|consen 575 KL---NRSSL------FMTLRNQPLALSLYRQFMRHQDRA---TL-YDFYNQDDNHQALASFHLQASYAAETIEGRIPAL 641 (829)
T ss_pred HH---HHHHH------HHHHHhchhhhHHHHHHHHhhchh---hh-hhhhhcccchhhhhhhhhhhhhhhhhhcccchhH
Confidence 21 00111 1111222233333332211 1110 01 11112222222222221 1000 0011122223
Q ss_pred HHHHHhhccccccchhhHHHHH----------HH-HhCCCCchhhHhhHHHHHHhcCChhHHHHHHHhcccCCcccHHHH
Q 037236 476 GSLILACTHLKSLHRGKEIHGF----------VI-RNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMEDKSLVSWNTM 544 (953)
Q Consensus 476 ~~ll~~~~~~~~~~~a~~i~~~----------~~-~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~l 544 (953)
...-.++++........+..+. +. +.|......+.+--+.-+...|+..+|.++-.+..-+|-..|---
T Consensus 642 k~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk 721 (829)
T KOG2280|consen 642 KTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLK 721 (829)
T ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHH
Confidence 3333444444332211111111 11 112222222333334445566777788888777777777777777
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCH
Q 037236 545 IAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCL 624 (953)
Q Consensus 545 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 624 (953)
+.+++..+++++-.++-+.+. +++-|..+..+|.+.|+.++|..+...+.. +.-.+.+|.++|++
T Consensus 722 ~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~---------l~ekv~ay~~~~~~ 786 (829)
T KOG2280|consen 722 LTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG---------LQEKVKAYLRVGDV 786 (829)
T ss_pred HHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC---------hHHHHHHHHHhccH
Confidence 777888887777555544432 145566666777777776666665544311 11456666666666
Q ss_pred HHHHHH
Q 037236 625 EQSRRV 630 (953)
Q Consensus 625 ~~A~~~ 630 (953)
.+|.++
T Consensus 787 ~eAad~ 792 (829)
T KOG2280|consen 787 KEAADL 792 (829)
T ss_pred HHHHHH
Confidence 666544
No 223
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.79 E-value=3.5 Score=44.35 Aligned_cols=47 Identities=6% Similarity=-0.007 Sum_probs=29.4
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037236 650 GIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFS 698 (953)
Q Consensus 650 ~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~ 698 (953)
-.+|++.++.-.-.-..+ +.|+..+|..+.-......++++|+.++.
T Consensus 473 ysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~ 519 (549)
T PF07079_consen 473 YSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQ 519 (549)
T ss_pred HhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 345666666555555555 66666666666666666666677766664
No 224
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.68 E-value=0.17 Score=51.47 Aligned_cols=95 Identities=12% Similarity=0.134 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhcCCCCC-hhH
Q 037236 638 DVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAG---LVENGLKYFSQMQKLHAVKPK-LEH 712 (953)
Q Consensus 638 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~~~~p~-~~~ 712 (953)
|...|-.|...|..+|+++.|...|.+..+ +.| |...+..+..++..+. .-.++..+|+++++ .+|+ +..
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~---~D~~~ira 229 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA---LDPANIRA 229 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh---cCCccHHH
Confidence 445555555555555555555555555555 333 3333444444333221 23345555555543 3333 334
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC
Q 037236 713 YACVVDMLGRAGKLDDAFKLIIEMP 737 (953)
Q Consensus 713 ~~~lv~~l~~~g~~~eA~~~~~~~~ 737 (953)
...|...+...|++.+|...++.|.
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL 254 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLL 254 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4444444555555555555555443
No 225
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.62 E-value=0.95 Score=50.29 Aligned_cols=205 Identities=10% Similarity=0.024 Sum_probs=102.5
Q ss_pred HHHhhhcCCCCCchhhhHHHHHHHhcCChhhHHHHhhcCCCCCchhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCc
Q 037236 86 ELISASTQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYPDVLSIFVELLSDTELKPDN 165 (953)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~ 165 (953)
+++. +.|..|+..+. ...++-.|++.+|-++|.+ .|.-..|+++|..|+- .
T Consensus 624 ~~~k-~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlRM-F------ 674 (1081)
T KOG1538|consen 624 EERK-KRGETPNDLLL---ADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLRM-F------ 674 (1081)
T ss_pred HHHH-hcCCCchHHHH---HHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHHH-H------
Confidence 3444 55655665432 3446667888888888864 4566667777666554 0
Q ss_pred ccHHHHHHHhhcCCChhhHhHHHHHHHHhCCCCChhHHHHHHHHhhccCChHHHHHHhccCCCCCeecHHHHHHHHHcCC
Q 037236 166 FTFPCVIKACGGIADVSFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGSSENG 245 (953)
Q Consensus 166 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g 245 (953)
-...-+...|+.++-+.+..+-.. +..++.--.+...++...|+.+.|..+. ..+|
T Consensus 675 ----D~aQE~~~~g~~~eKKmL~RKRA~--WAr~~kePkaAAEmLiSaGe~~KAi~i~------------------~d~g 730 (1081)
T KOG1538|consen 675 ----DYAQEFLGSGDPKEKKMLIRKRAD--WARNIKEPKAAAEMLISAGEHVKAIEIC------------------GDHG 730 (1081)
T ss_pred ----HHHHHHhhcCChHHHHHHHHHHHH--HhhhcCCcHHHHHHhhcccchhhhhhhh------------------hccc
Confidence 112223334444433333222111 1111111112233444455555554432 2233
Q ss_pred CchHHHHHHHHhhhccCCCCCChhhHHHHHHhhhcCCCchHHHHHHHHHHHhCCCCCchHHHHHHHhhHhcCChhHHHHH
Q 037236 246 FSCESFDLLIKMMGCEEGFIPDVATVVTVLPVCAGEGNVDLGILVHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQIL 325 (953)
Q Consensus 246 ~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 325 (953)
-.+-+.++-+++ -..+..+.-.+-..+.+...+..|.++|..+-.. .+++++....+++++|-.+
T Consensus 731 W~d~lidI~rkl------d~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFal 795 (1081)
T KOG1538|consen 731 WVDMLIDIARKL------DKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFAL 795 (1081)
T ss_pred HHHHHHHHHhhc------chhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhh
Confidence 333334444333 1223334444444455566666677776655322 3577788888888888888
Q ss_pred HhcCCCCCcccHHHHHHHHHcCCChhHHHHHHH
Q 037236 326 FDKNNNKNVVSWNTIIGAFSMAGDVCGTFDLLR 358 (953)
Q Consensus 326 f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~ 358 (953)
-++.|+--...|-....-++.+.++++|.+.|.
T Consensus 796 Ae~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfh 828 (1081)
T KOG1538|consen 796 AEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFH 828 (1081)
T ss_pred hhhCccccccccchHHHHhhhhhhHHHHHHHHH
Confidence 888887322233333333444444555544443
No 226
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.59 E-value=4.2 Score=43.82 Aligned_cols=352 Identities=10% Similarity=0.013 Sum_probs=173.1
Q ss_pred HHHhccccchHHHHHHHHHHHHcCCC----CchhHHHHHHHHHHhcCCcccHHHHhccCCCCChhhHHHHHHHHHhcCCh
Q 037236 378 LTSCSEKSELLSLKELHGYSLRHGFD----NDELVANAFVVAYAKCGSEISAENVFHGMDSRTVSSWNALICGYAQNGDH 453 (953)
Q Consensus 378 l~~~~~~~~~~~a~~i~~~~~~~g~~----~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~ 453 (953)
...+...|.+.+|+.++..++..=++ .+..+|+.++-++++.=-++. -+.+...=...|--||..|.+.=+.
T Consensus 135 a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl----~e~~s~dl~pdyYemilfY~kki~~ 210 (549)
T PF07079_consen 135 AHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLEL----KESMSSDLYPDYYEMILFYLKKIHA 210 (549)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHH----HHhcccccChHHHHHHHHHHHHHHH
Confidence 34455667777777766666554333 677777777666665421111 1111111112355555555443111
Q ss_pred HHHHHHHHHhhhCCCCCCcchHHHHHHhhccc--cccchhhHHHHHHHHhCCCCch-hhHhhHHHHHHhcCChhHHHHHH
Q 037236 454 LKALDYFLQMTHSDLEPDLFSIGSLILACTHL--KSLHRGKEIHGFVIRNGLEGDS-FTGISLLSLYMHCEKSSSARVLF 530 (953)
Q Consensus 454 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~--~~~~~a~~i~~~~~~~g~~~~~-~~~~~li~~y~~~g~~~~A~~~f 530 (953)
-++ -.=..+.|...-+..++....-. ..+.--.+++..-.+.-+.|+- -+...|+.-+.+ +.+++..+-
T Consensus 211 ~d~------~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~c 282 (549)
T PF07079_consen 211 FDQ------RPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFC 282 (549)
T ss_pred Hhh------chHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHH
Confidence 111 00011233333333333322211 1222223333333334444432 233344444443 334443333
Q ss_pred Hhcc--------cCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHH-------HHHHhc-cc---cchHH
Q 037236 531 DEME--------DKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVS-------ILSACS-QL---SALRL 591 (953)
Q Consensus 531 ~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-------ll~a~~-~~---~~~~~ 591 (953)
+.+. +.=+.++..++...++.++..+|-+.+.-+.-. .|+...-.- +-+..+ .- .++..
T Consensus 283 e~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~ 360 (549)
T PF07079_consen 283 EAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRD 360 (549)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHH
Confidence 3222 223456777888888888888888887766543 343321111 111111 11 11222
Q ss_pred HHHHHHHHHHcCCCCCc-cHH-HHHHHHHHhcCC-HHHHHHHhhhcC---CCCHHHHHHHHH----HHHh---cCChHHH
Q 037236 592 GKETHCYALKAILTNDA-FVA-CSIIDMYAKCGC-LEQSRRVFDRLK---DKDVTSWNAIIG----GHGI---HGYGKEA 658 (953)
Q Consensus 592 a~~~~~~~~~~~~~~~~-~~~-~~li~~y~~~g~-~~~A~~~~~~~~---~~~~~~~~~li~----~~~~---~g~~~~A 658 (953)
-..++..+....++... ++| .--..-|-+.|. -++|.+++..+. +.|..+-|.+.. .|.+ ......-
T Consensus 361 yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rL 440 (549)
T PF07079_consen 361 YLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRL 440 (549)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 22233333333322111 011 111233445555 778888888766 456655444322 2221 1123344
Q ss_pred HHHHHHHHHCCCCC----CHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHH
Q 037236 659 IELFEKMLALGHKP----DTFTFVGILMA--CNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKL 732 (953)
Q Consensus 659 ~~l~~~m~~~g~~P----~~~t~~~ll~a--~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~ 732 (953)
+.+-+-+.+.|+.| +...-+.|..| +...|++.++.-+-.=.. .+.|++.+|..+.-.+....+++||.++
T Consensus 441 lkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~ 517 (549)
T PF07079_consen 441 LKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEY 517 (549)
T ss_pred HHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 44444556678887 33333444433 457888888876644443 3889999999999899999999999999
Q ss_pred HHhCCCCCChhHHHHH
Q 037236 733 IIEMPEEADAGIWSSL 748 (953)
Q Consensus 733 ~~~~~~~~~~~~~~~l 748 (953)
+...| |+..+|++-
T Consensus 518 l~~LP--~n~~~~dsk 531 (549)
T PF07079_consen 518 LQKLP--PNERMRDSK 531 (549)
T ss_pred HHhCC--CchhhHHHH
Confidence 99986 455555443
No 227
>PRK11906 transcriptional regulator; Provisional
Probab=95.55 E-value=0.13 Score=55.63 Aligned_cols=113 Identities=14% Similarity=0.143 Sum_probs=91.0
Q ss_pred CHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhh---------cCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcC
Q 037236 689 LVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGR---------AGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYG 756 (953)
Q Consensus 689 ~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~---------~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g 756 (953)
..+.|..+|.+.+....++|+ ...|..+...+.. .....+|.++.++... +.|+.....++.+....|
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 356788899999866678888 6667666554422 2245567777776654 567888888888888899
Q ss_pred ChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHH
Q 037236 757 ALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQR 801 (953)
Q Consensus 757 ~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 801 (953)
+++.|...+++++.++|+.+.++...+++..-+|+.++|.+..++
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999996655
No 228
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.50 E-value=6.8 Score=45.62 Aligned_cols=118 Identities=14% Similarity=-0.002 Sum_probs=69.0
Q ss_pred HHHHHHHhhccCChHHHHHHhccCCCCCeecHHHHHH----HHHcCCCchHHHHHHHHhhhccCCCCCChhhHHHHHHhh
Q 037236 203 SNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIIC----GSSENGFSCESFDLLIKMMGCEEGFIPDVATVVTVLPVC 278 (953)
Q Consensus 203 ~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~----~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~ 278 (953)
...-++++.+...++.|..+-+.-.. |...-..+.. -+-+.|++++|...|-+- -.-+.| +.+++-+
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~t---I~~le~-----s~Vi~kf 407 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIET---IGFLEP-----SEVIKKF 407 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH---cccCCh-----HHHHHHh
Confidence 34455666666677777766654332 2222222222 344678888888888766 222333 2344444
Q ss_pred hcCCCchHHHHHHHHHHHhCCCCCchHHHHHHHhhHhcCChhHHHHHHhcCC
Q 037236 279 AGEGNVDLGILVHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFDKNN 330 (953)
Q Consensus 279 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~ 330 (953)
........-..+++.+.+.|+.. ..--+.|+++|.|.++.+.-.++.+...
T Consensus 408 Ldaq~IknLt~YLe~L~~~gla~-~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKGLAN-SDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred cCHHHHHHHHHHHHHHHHccccc-chhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 44444455556667777777543 3334668888888888888777776655
No 229
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.45 E-value=4.3 Score=46.78 Aligned_cols=75 Identities=9% Similarity=0.124 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHhcCCcccHHHHhccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhcc
Q 037236 407 LVANAFVVAYAKCGSEISAENVFHGMDSRTVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTH 484 (953)
Q Consensus 407 ~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 484 (953)
.++..+|+.+.-.|++++|-...-.|...+..-|--.+..+...++......+ +.....+.+...|-.+|..+..
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 35566777777788888888888888888888888888777777766544332 2211122344556666665544
No 230
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.28 E-value=2 Score=42.61 Aligned_cols=49 Identities=14% Similarity=0.078 Sum_probs=26.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHH
Q 037236 680 ILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDD 728 (953)
Q Consensus 680 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~e 728 (953)
+..-|.+.|.+..|..-++.+++.+.-.|. .+....|+..|.+.|..+.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~ 196 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQA 196 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHH
Confidence 344566666666666666666665544333 3344555566666665553
No 231
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.27 E-value=0.062 Score=43.67 Aligned_cols=59 Identities=12% Similarity=0.272 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC----CC-hhHHHHHHHHHhhcCCHHHHHHHHH
Q 037236 676 TFVGILMACNHAGLVENGLKYFSQMQKLHAVK----PK-LEHYACVVDMLGRAGKLDDAFKLII 734 (953)
Q Consensus 676 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~----p~-~~~~~~lv~~l~~~g~~~eA~~~~~ 734 (953)
++..+...+...|++++|+.+|++..+..... |+ ..++..+..+|.+.|++++|++.++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~ 70 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQ 70 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45555556666666666666666554321111 11 2334444444444555555444444
No 232
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.19 E-value=8.5 Score=44.87 Aligned_cols=115 Identities=13% Similarity=0.049 Sum_probs=70.7
Q ss_pred HHHHHHhcCChhhHHHHhhcCCCCCchhHHHHHH----HHhcCCChhhHHHHHHHhHhcCCCCCCcccHHHHHHHhhcCC
Q 037236 104 LITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVS----GFTKNELYPDVLSIFVELLSDTELKPDNFTFPCVIKACGGIA 179 (953)
Q Consensus 104 Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~----~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~ll~~~~~~~ 179 (953)
-+....+-.-++-|..+-..-..+ ...-..+.+ -+.+.|++++|...|-+-.. -+.| +.+++-+....
T Consensus 340 kL~iL~kK~ly~~Ai~LAk~~~~d-~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~--~le~-----s~Vi~kfLdaq 411 (933)
T KOG2114|consen 340 KLDILFKKNLYKVAINLAKSQHLD-EDTLAEIHRKYGDYLYGKGDFDEATDQYIETIG--FLEP-----SEVIKKFLDAQ 411 (933)
T ss_pred HHHHHHHhhhHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc--cCCh-----HHHHHHhcCHH
Confidence 355555556666666665543322 222222222 34568999999988877654 2333 34555565555
Q ss_pred ChhhHhHHHHHHHHhCCCCChhHHHHHHHHhhccCChHHHHHHhccCC
Q 037236 180 DVSFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP 227 (953)
Q Consensus 180 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~ 227 (953)
....-..+++.+.+.|+. +...-+.|++.|.+.++.+.-.+..+.-+
T Consensus 412 ~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 412 RIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 555666677777787865 44455678888888888888777766655
No 233
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.08 E-value=0.51 Score=47.84 Aligned_cols=120 Identities=13% Similarity=0.085 Sum_probs=79.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhHHHH---HHHHHHhcC
Q 037236 681 LMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSS---LLRSCRTYG 756 (953)
Q Consensus 681 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~~~~~~~---ll~~~~~~g 756 (953)
.......|++.+|...|+..... .|+ .+.-..|+..|...|+.++|..++..+|.+....-|.. -+.......
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~---~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa 217 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQA---APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAA 217 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHh---CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHh
Confidence 33455678888888888877652 333 45566677888888888888888888876433333322 222222222
Q ss_pred ChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHH-HHHHHHH
Q 037236 757 ALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRM-MRQRMKE 804 (953)
Q Consensus 757 ~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~-~~~~m~~ 804 (953)
+..... .++.-+..+|+|...-+.|+..|...|+.++|.. ++..|+.
T Consensus 218 ~~~~~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 218 ATPEIQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred cCCCHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 222222 2344556799999999999999999999999998 4555543
No 234
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=95.03 E-value=0.17 Score=48.94 Aligned_cols=96 Identities=9% Similarity=0.064 Sum_probs=64.6
Q ss_pred HHHHHhc--ccCCcccHHHHHHHHHhc-----CChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccc-------------
Q 037236 527 RVLFDEM--EDKSLVSWNTMIAGYSQN-----KLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQL------------- 586 (953)
Q Consensus 527 ~~~f~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~------------- 586 (953)
...|+.. ..+|..++..++..|.+. |..+=....++.|.+-|+.-|..+|+.||+.+-+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3445554 345666777777776653 55555666677788888888888888888776541
Q ss_pred ---cchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcC
Q 037236 587 ---SALRLGKETHCYALKAILTNDAFVACSIIDMYAKCG 622 (953)
Q Consensus 587 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 622 (953)
...+.|..++++|...|+.||..++..|++.+++.+
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 234556777777777777777777777777776554
No 235
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.03 E-value=1.5 Score=38.60 Aligned_cols=141 Identities=16% Similarity=0.174 Sum_probs=82.8
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHH
Q 037236 649 HGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDD 728 (953)
Q Consensus 649 ~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~e 728 (953)
+...|..++..++..+...+ . +..-++-++--...+-+=+-..+.++++-+-+.+.|- .....++..|.+.|...|
T Consensus 12 ~ildG~V~qGveii~k~v~S--s-ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C-~NlKrVi~C~~~~n~~se 87 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS--S-NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKC-GNLKRVIECYAKRNKLSE 87 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH--S--HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG--S-THHHHHHHHHTT---H
T ss_pred HHHhchHHHHHHHHHHHcCc--C-CccccceeeeecchhhchhHHHHHHHHHhhhcCchhh-cchHHHHHHHHHhcchHH
Confidence 44568888889998888763 1 2222333333333333444455556655443333332 123345566666554433
Q ss_pred HHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCc
Q 037236 729 AFKLIIEMPEEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKERGLQ 808 (953)
Q Consensus 729 A~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 808 (953)
....-+++....|.-++-.+++..++.-+..+|...+-++++|.+.|...++.+++++.-++|++
T Consensus 88 ---------------~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 88 ---------------YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp ---------------HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred ---------------HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 23344566678888899999999988766678999999999999999999999999999998875
No 236
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=94.97 E-value=0.13 Score=53.81 Aligned_cols=256 Identities=13% Similarity=0.046 Sum_probs=141.7
Q ss_pred HHhcCChHHHHHHHHHhhhCCCC---CCcchHHHHHHhhccccccchhhHHHHHHH--Hh--CCC-CchhhHhhHHHHHH
Q 037236 447 YAQNGDHLKALDYFLQMTHSDLE---PDLFSIGSLILACTHLKSLHRGKEIHGFVI--RN--GLE-GDSFTGISLLSLYM 518 (953)
Q Consensus 447 ~~~~g~~~~A~~~~~~m~~~g~~---p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~--~~--g~~-~~~~~~~~li~~y~ 518 (953)
+++.|+....+.+|+..++-|.. .=+..|..+-.+|.-++++++|.++|..=+ .. |-. -.......|.+.+-
T Consensus 27 Lck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlK 106 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLK 106 (639)
T ss_pred HHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhh
Confidence 45666666666666666665422 122234445555666666777766664422 11 110 01122223333344
Q ss_pred hcCChhHHHHHHHh-cc------cC--CcccHHHHHHHHHhcCC--------------------hhHHHHHHHHHH----
Q 037236 519 HCEKSSSARVLFDE-ME------DK--SLVSWNTMIAGYSQNKL--------------------PVEAIVLFRRMF---- 565 (953)
Q Consensus 519 ~~g~~~~A~~~f~~-~~------~~--~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~---- 565 (953)
-.|.+++|.-.-.+ +. .+ ...++..+...|...|+ .+.|.++|.+=+
T Consensus 107 v~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~ 186 (639)
T KOG1130|consen 107 VKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSE 186 (639)
T ss_pred hhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555443221 11 00 11233444555544332 123444443321
Q ss_pred HcCCC-CChhhHHHHHHHhccccchHHHHHHHHHHHH----cCCC-CCccHHHHHHHHHHhcCCHHHHHHHhhhcC----
Q 037236 566 SIGVQ-PCEISIVSILSACSQLSALRLGKETHCYALK----AILT-NDAFVACSIIDMYAKCGCLEQSRRVFDRLK---- 635 (953)
Q Consensus 566 ~~g~~-p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---- 635 (953)
+.|-. .--..|..+-+.|.-+|+++.+...|+.-.. .|-. .....+..|.+.+.-.|+++.|.+.|....
T Consensus 187 ~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAi 266 (639)
T KOG1130|consen 187 KLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAI 266 (639)
T ss_pred HhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHH
Confidence 11111 1113455555566667889999888764332 2321 233456677888888899999999888643
Q ss_pred ---CCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037236 636 ---DKD--VTSWNAIIGGHGIHGYGKEAIELFEKMLAL----G-HKPDTFTFVGILMACNHAGLVENGLKYFSQMQK 702 (953)
Q Consensus 636 ---~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g-~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 702 (953)
.+. ..+.-+|...|.-..++++|+.++.+-+.- + ..-....+.+|..++...|..++|+.+.+.-.+
T Consensus 267 elg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 267 ELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 333 335567888888888899999988874431 1 111446788999999999999999887765543
No 237
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.96 E-value=0.032 Score=45.43 Aligned_cols=26 Identities=15% Similarity=0.333 Sum_probs=15.3
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC
Q 037236 711 EHYACVVDMLGRAGKLDDAFKLIIEM 736 (953)
Q Consensus 711 ~~~~~lv~~l~~~g~~~eA~~~~~~~ 736 (953)
..|+.+...|.+.|++++|++.+++.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~a 31 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKA 31 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45566666666666666666666543
No 238
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.81 E-value=2.5 Score=42.23 Aligned_cols=67 Identities=19% Similarity=0.210 Sum_probs=50.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChh
Q 037236 645 IIGGHGIHGYGKEAIELFEKMLALG-HKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLE 711 (953)
Q Consensus 645 li~~~~~~g~~~~A~~l~~~m~~~g-~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 711 (953)
-+..-.+.|++++|.+.|+.+..+. ..| ...+...++-++.+.+++++|+..+++..+.++-.|++.
T Consensus 40 ~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d 108 (254)
T COG4105 40 EGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD 108 (254)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh
Confidence 3444567788999999998888752 122 456677778888889999999999998888888888754
No 239
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.77 E-value=0.26 Score=45.92 Aligned_cols=70 Identities=19% Similarity=0.276 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----hcCCCCChhH
Q 037236 641 SWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQK----LHAVKPKLEH 712 (953)
Q Consensus 641 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~ 712 (953)
....++..+...|++++|+.+.++++. ..| |...+..++.++...|+..+|.+.|+.+.+ ..|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 445566777788888888888888888 567 777888888888888988888888877643 4688887554
No 240
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.62 E-value=3 Score=50.34 Aligned_cols=154 Identities=13% Similarity=0.144 Sum_probs=90.6
Q ss_pred cCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHhcCCHHHHHHH
Q 037236 621 CGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFV----GILMACNHAGLVENGLKY 696 (953)
Q Consensus 621 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~----~ll~a~~~~g~~~~a~~~ 696 (953)
.|++++|..-+.++. ...|.-.+.---+||.+.+|+.++ +|+...+. +...-|...+.+++|.-.
T Consensus 893 L~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~ 961 (1265)
T KOG1920|consen 893 LKRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALM 961 (1265)
T ss_pred HHHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 355666666666554 222333344345677777777664 56655444 444445567777777777
Q ss_pred HHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhH--HHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 037236 697 FSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAGI--WSSLLRSCRTYGALKMGEKVAKTLLELEPD 774 (953)
Q Consensus 697 ~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~ 774 (953)
|+..-+ + .--+.+|..+|++.+|+.+..++....|... -..|.+-+...++.-+|-++.+....
T Consensus 962 Ye~~Gk---l-------ekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s---- 1027 (1265)
T KOG1920|consen 962 YERCGK---L-------EKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLS---- 1027 (1265)
T ss_pred HHHhcc---H-------HHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc----
Confidence 765522 1 1124567778888888888887765445443 36777777777766666555554432
Q ss_pred CcchHHHHHHHHHhcCCchHHHHHHHHH
Q 037236 775 KAENYVLVSNIYAGSEKWDDVRMMRQRM 802 (953)
Q Consensus 775 ~~~~~~~l~~~y~~~g~~~~a~~~~~~m 802 (953)
|+ .--...|.+...|++|.++-..-
T Consensus 1028 d~---~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1028 DP---EEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred CH---HHHHHHHhhHhHHHHHHHHHHhc
Confidence 11 12234567777788888765443
No 241
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.62 E-value=1.5 Score=42.21 Aligned_cols=179 Identities=13% Similarity=0.091 Sum_probs=105.5
Q ss_pred HHhcCCHHHHHHHhhhcC--CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 037236 618 YAKCGCLEQSRRVFDRLK--DK-DVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENG 693 (953)
Q Consensus 618 y~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a 693 (953)
|-..|-..-|+.=|.+.. .| -+..||-+.--+...|+++.|.+.|+...+ ..| ...++..-.-++.-.|++.-|
T Consensus 75 YDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LA 152 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLA 152 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhh
Confidence 334455555555555543 33 345677777777888889999999888888 566 344554445556667888888
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHH-HhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 037236 694 LKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLI-IEMPEEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELE 772 (953)
Q Consensus 694 ~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~-~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~ 772 (953)
.+-|...-+..+-.|=...|-.+ --+.-+..+|..-+ ++.. ..|..-|+..+-.+..-. + .-+.+++++.+..
T Consensus 153 q~d~~~fYQ~D~~DPfR~LWLYl---~E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yLgk-i-S~e~l~~~~~a~a 226 (297)
T COG4785 153 QDDLLAFYQDDPNDPFRSLWLYL---NEQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYLGK-I-SEETLMERLKADA 226 (297)
T ss_pred HHHHHHHHhcCCCChHHHHHHHH---HHhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHHhh-c-cHHHHHHHHHhhc
Confidence 77666554432222312222211 22333556666443 3333 455566766665543322 1 1122333333332
Q ss_pred CCC-------cchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 773 PDK-------AENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 773 p~~-------~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
.++ ..+|..|+..|...|..++|..++|..-.
T Consensus 227 ~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 227 TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 232 46789999999999999999999987654
No 242
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.59 E-value=5.5 Score=39.82 Aligned_cols=163 Identities=20% Similarity=0.187 Sum_probs=114.7
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHhhhcCC--CCH-HHHHHHHH-HHHhcCChHHHHHHHHHHHHCCCCC----CHHHHH
Q 037236 607 DAFVACSIIDMYAKCGCLEQSRRVFDRLKD--KDV-TSWNAIIG-GHGIHGYGKEAIELFEKMLALGHKP----DTFTFV 678 (953)
Q Consensus 607 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~-~~~~~g~~~~A~~l~~~m~~~g~~P----~~~t~~ 678 (953)
....+..+...+...+....+...+..... ++. ..+..... .+...|+.+.|...|++... ..| ....+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~ 171 (291)
T COG0457 94 LAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALL 171 (291)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHH
Confidence 344455556666667777777777776653 221 22333333 68888999999999999866 344 334444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCC-hhHHHHHHHHHHh
Q 037236 679 GILMACNHAGLVENGLKYFSQMQKLHAVKPK--LEHYACVVDMLGRAGKLDDAFKLIIEMPE-EAD-AGIWSSLLRSCRT 754 (953)
Q Consensus 679 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~~-~~~~~~ll~~~~~ 754 (953)
.....+...++.+++...+....+. .|+ ...+..+...+...|++++|...+..... .|+ ...+..+...+..
T Consensus 172 ~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (291)
T COG0457 172 ALGALLEALGRYEEALELLEKALKL---NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLE 248 (291)
T ss_pred HhhhHHHHhcCHHHHHHHHHHHHhh---CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHH
Confidence 5555577888999999999888653 333 56677888888889999999998887654 343 4566666666666
Q ss_pred cCChhHHHHHHHHHhccCCC
Q 037236 755 YGALKMGEKVAKTLLELEPD 774 (953)
Q Consensus 755 ~g~~~~a~~~~~~~~~l~p~ 774 (953)
.++.+.+...+++.++..|.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 249 LGRYEEALEALEKALELDPD 268 (291)
T ss_pred cCCHHHHHHHHHHHHHhCcc
Confidence 67799999999999999887
No 243
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.54 E-value=0.15 Score=47.95 Aligned_cols=86 Identities=16% Similarity=0.167 Sum_probs=65.0
Q ss_pred HhhcCCHHHHHHHHHhCCC-------CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCc
Q 037236 720 LGRAGKLDDAFKLIIEMPE-------EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKW 792 (953)
Q Consensus 720 l~~~g~~~eA~~~~~~~~~-------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~ 792 (953)
+.+.|++++|..-|..... +-.++.|..-..+..+.+..+.|....-+++++.|....+....+.+|.+..++
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 3445555555555443321 123455666666677888899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHC
Q 037236 793 DDVRMMRQRMKER 805 (953)
Q Consensus 793 ~~a~~~~~~m~~~ 805 (953)
++|+.-++++.+.
T Consensus 185 eealeDyKki~E~ 197 (271)
T KOG4234|consen 185 EEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999888773
No 244
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.50 E-value=0.3 Score=49.08 Aligned_cols=95 Identities=20% Similarity=0.193 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHH
Q 037236 641 SWNAIIGGHGIHGYGKEAIELFEKMLALGHKPD----TFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYAC 715 (953)
Q Consensus 641 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ 715 (953)
.|+.-+. +...|++.+|...|...++. -|+ ...+.-|..++...|++++|..+|..+.+.++-.|. ++.+--
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 4555444 45667899999999998885 342 345666888999999999999999999988887777 577777
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCC
Q 037236 716 VVDMLGRAGKLDDAFKLIIEMPE 738 (953)
Q Consensus 716 lv~~l~~~g~~~eA~~~~~~~~~ 738 (953)
|...+.+.|+.++|...+++...
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHH
Confidence 88888888888888877776653
No 245
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.50 E-value=1.7 Score=47.52 Aligned_cols=103 Identities=14% Similarity=0.190 Sum_probs=73.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChh--HHHHHHHH
Q 037236 676 TFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAG--IWSSLLRS 751 (953)
Q Consensus 676 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~--~~~~ll~~ 751 (953)
+-..+...+-+.|+.+||++.|++|.+.+...-.......|+..|...+++.|+..++.+-.. -|.+. .|++.+-.
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 334566777789999999999999987654333355667799999999999999999988753 24433 45554444
Q ss_pred HHhcCCh---------------hHHHHHHHHHhccCCCCcch
Q 037236 752 CRTYGAL---------------KMGEKVAKTLLELEPDKAEN 778 (953)
Q Consensus 752 ~~~~g~~---------------~~a~~~~~~~~~l~p~~~~~ 778 (953)
.+.-++. ..|.+++.++++.+|.-+..
T Consensus 341 aRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 341 ARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred HHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence 4444431 23568899999999976653
No 246
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.30 E-value=17 Score=44.29 Aligned_cols=157 Identities=17% Similarity=0.183 Sum_probs=97.3
Q ss_pred CChhHHHHHHHhcccCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHH
Q 037236 521 EKSSSARVLFDEMEDKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYAL 600 (953)
Q Consensus 521 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 600 (953)
+++++|+.-+..+. ...|.-.+.--.++|.+.+|+.++ +|+...+..+..+|+.. +.
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~h------------L~ 950 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADH------------LR 950 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHH------------HH
Confidence 56777777666665 233444455556677888888765 67777777766665432 11
Q ss_pred HcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH--HH
Q 037236 601 KAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFT--FV 678 (953)
Q Consensus 601 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t--~~ 678 (953)
....+.--.-+|.++|+.++|.+. |...|++++|+.+..+|.. .-|... -.
T Consensus 951 ------~~~~~~~Aal~Ye~~GklekAl~a------------------~~~~~dWr~~l~~a~ql~~---~~de~~~~a~ 1003 (1265)
T KOG1920|consen 951 ------EELMSDEAALMYERCGKLEKALKA------------------YKECGDWREALSLAAQLSE---GKDELVILAE 1003 (1265)
T ss_pred ------HhccccHHHHHHHHhccHHHHHHH------------------HHHhccHHHHHHHHHhhcC---CHHHHHHHHH
Confidence 112233345678888888888655 4456788888887776633 112222 24
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 037236 679 GILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEM 736 (953)
Q Consensus 679 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~ 736 (953)
.|..-+..+++.-+|-++..+... .| .--+..|+++..+++|+.+....
T Consensus 1004 ~L~s~L~e~~kh~eAa~il~e~~s----d~-----~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1004 ELVSRLVEQRKHYEAAKILLEYLS----DP-----EEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHcccchhHHHHHHHHhc----CH-----HHHHHHHhhHhHHHHHHHHHHhc
Confidence 566677778887777777655432 23 23456777788888888776554
No 247
>PRK15331 chaperone protein SicA; Provisional
Probab=94.20 E-value=1.2 Score=41.35 Aligned_cols=91 Identities=11% Similarity=-0.035 Sum_probs=53.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcC
Q 037236 646 IGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAG 724 (953)
Q Consensus 646 i~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g 724 (953)
..-+-..|++++|..+|.-+.. ..| |..-+..|..+|-..+.+++|...|........-.|.+ +-.+...|...|
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~--~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p--~f~agqC~l~l~ 119 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCI--YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRP--VFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCc--cchHHHHHHHhC
Confidence 3334566777777777776666 344 44445566666666777777777776654322222322 333556667777
Q ss_pred CHHHHHHHHHhCCCCC
Q 037236 725 KLDDAFKLIIEMPEEA 740 (953)
Q Consensus 725 ~~~eA~~~~~~~~~~~ 740 (953)
+.++|++.|+.....|
T Consensus 120 ~~~~A~~~f~~a~~~~ 135 (165)
T PRK15331 120 KAAKARQCFELVNERT 135 (165)
T ss_pred CHHHHHHHHHHHHhCc
Confidence 7777777766655433
No 248
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.15 E-value=1.7 Score=40.04 Aligned_cols=121 Identities=13% Similarity=0.299 Sum_probs=66.5
Q ss_pred HHHHHHHhcCCHHHHHHHhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 037236 613 SIIDMYAKCGCLEQSRRVFDRLKD---KDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGL 689 (953)
Q Consensus 613 ~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~ 689 (953)
.++..+...+........++.+.. .+....|.++..|++.+ ..+.++.++. .++......++..|.+.+.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCc
Confidence 344444444555555555554432 23445555666665543 2333444432 1233444556777777777
Q ss_pred HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhc-CCHHHHHHHHHhCCCCCChhHHHHHHHHHH
Q 037236 690 VENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRA-GKLDDAFKLIIEMPEEADAGIWSSLLRSCR 753 (953)
Q Consensus 690 ~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~-g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~ 753 (953)
++++..++..+.. |...++.+... ++.+.|.+++.+ ..++..|..++..|.
T Consensus 85 ~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~---~~~~~lw~~~~~~~l 136 (140)
T smart00299 85 YEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVK---QNNPELWAEVLKALL 136 (140)
T ss_pred HHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHh---CCCHHHHHHHHHHHH
Confidence 7777777765521 23334444444 777788887776 335667777776654
No 249
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.15 E-value=0.066 Score=35.12 Aligned_cols=33 Identities=21% Similarity=0.278 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 037236 743 GIWSSLLRSCRTYGALKMGEKVAKTLLELEPDK 775 (953)
Q Consensus 743 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~ 775 (953)
.+|..++..+...|+++.|...++++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 468888888999999999999999999999864
No 250
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.14 E-value=0.57 Score=41.91 Aligned_cols=49 Identities=12% Similarity=0.179 Sum_probs=34.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 037236 670 HKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVD 718 (953)
Q Consensus 670 ~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~ 718 (953)
..|+..++.+++.+++..|++..|.++.+...+.|+++-+...|..|+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 5567777777777777777777777777777777776555555555543
No 251
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.02 E-value=0.098 Score=34.20 Aligned_cols=33 Identities=21% Similarity=0.353 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 037236 743 GIWSSLLRSCRTYGALKMGEKVAKTLLELEPDK 775 (953)
Q Consensus 743 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~ 775 (953)
.+|..+...+...|+++.|...++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 467778888888889999999999999888875
No 252
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.95 E-value=0.47 Score=48.99 Aligned_cols=224 Identities=13% Similarity=0.056 Sum_probs=106.5
Q ss_pred HHhcCChhHHHHHHHHHHHc--CCCCChhhHHHHHHHhccccchHHHHHHHHHHHHc--CCCCCc---cHHHHHHHHHHh
Q 037236 548 YSQNKLPVEAIVLFRRMFSI--GVQPCEISIVSILSACSQLSALRLGKETHCYALKA--ILTNDA---FVACSIIDMYAK 620 (953)
Q Consensus 548 ~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~--~~~~~~---~~~~~li~~y~~ 620 (953)
+.+..+.++|+..+.+-... ...---.++..+..+.++.|..++....---.+.. ...... ..|-.|...+.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888776653 11112245555666666666666554442111111 111111 122223333333
Q ss_pred cCCHHHHHHHhhhcC-----CC--C-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC---CC--CHHHHHHHHHHHHhc
Q 037236 621 CGCLEQSRRVFDRLK-----DK--D-VTSWNAIIGGHGIHGYGKEAIELFEKMLALGH---KP--DTFTFVGILMACNHA 687 (953)
Q Consensus 621 ~g~~~~A~~~~~~~~-----~~--~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~P--~~~t~~~ll~a~~~~ 687 (953)
.-++.+++.+-..-. .+ + -...-+|..++...+.++++++.|+....--- .| .-..+.+|.+.+...
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 333333333322111 00 0 01222345555555667777777776654211 11 224566666667777
Q ss_pred CCHHHHHHHHHHHH---HhcCCCCChhHHHHH-----HHHHhhcCCHHHHHHHHHhCCC----CCC----hhHHHHHHHH
Q 037236 688 GLVENGLKYFSQMQ---KLHAVKPKLEHYACV-----VDMLGRAGKLDDAFKLIIEMPE----EAD----AGIWSSLLRS 751 (953)
Q Consensus 688 g~~~~a~~~~~~m~---~~~~~~p~~~~~~~l-----v~~l~~~g~~~eA~~~~~~~~~----~~~----~~~~~~ll~~ 751 (953)
.++++|.-+..... +.+++..-..-|.++ .-+|...|++.+|.+..++... ..| ......+...
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 77777666554432 233333222223332 2344555666556555544321 122 2234555666
Q ss_pred HHhcCChhHHHHHHHHHhcc
Q 037236 752 CRTYGALKMGEKVAKTLLEL 771 (953)
Q Consensus 752 ~~~~g~~~~a~~~~~~~~~l 771 (953)
|+..|+.|.|-.-++.+...
T Consensus 256 yR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHhcccHhHHHHHHHHHHHH
Confidence 77777777766666665543
No 253
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.75 E-value=0.86 Score=50.78 Aligned_cols=131 Identities=16% Similarity=0.247 Sum_probs=88.4
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCH
Q 037236 649 HGIHGYGKEAIELFEKMLALGHKP--DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKL 726 (953)
Q Consensus 649 ~~~~g~~~~A~~l~~~m~~~g~~P--~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~ 726 (953)
....|+++++.++.+.-. +-| ...-...++.-+.+.|..+.|+++-..- . .-.++-.+.|++
T Consensus 271 av~~~d~~~v~~~i~~~~---ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~----------~---~rFeLAl~lg~L 334 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASN---LLPNIPKDQGQSIARFLEKKGYPELALQFVTDP----------D---HRFELALQLGNL 334 (443)
T ss_dssp HHHTT-HHH-----HHHH---TGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-H----------H---HHHHHHHHCT-H
T ss_pred HHHcCChhhhhhhhhhhh---hcccCChhHHHHHHHHHHHCCCHHHHHhhcCCh----------H---HHhHHHHhcCCH
Confidence 345678888766664111 222 2344677788888999999998874322 2 124677889999
Q ss_pred HHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCC
Q 037236 727 DDAFKLIIEMPEEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKERG 806 (953)
Q Consensus 727 ~eA~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 806 (953)
+.|.++.++. ++...|..|...+..+||++.|+.+++++ .-+..|+-+|...|+-+.-.++-+....+|
T Consensus 335 ~~A~~~a~~~---~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 335 DIALEIAKEL---DDPEKWKQLGDEALRQGNIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHHCCCC---STHHHHHHHHHHHHHTTBHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhc---CcHHHHHHHHHHHHHcCCHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 9999988764 47889999999999999999999999984 345678889999999877777766666544
No 254
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.51 E-value=0.99 Score=40.86 Aligned_cols=58 Identities=12% Similarity=0.154 Sum_probs=36.7
Q ss_pred HhhcCCHHHHHHHHHhCCC----CC-ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcc
Q 037236 720 LGRAGKLDDAFKLIIEMPE----EA-DAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAE 777 (953)
Q Consensus 720 l~~~g~~~eA~~~~~~~~~----~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~ 777 (953)
..+.|++++|.+.|+.+.. .| ...+--.|+.++...|+++.|...+++.++++|.++.
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 3445566666655555432 11 2234445677778888888888888888888877654
No 255
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.35 E-value=0.62 Score=46.45 Aligned_cols=99 Identities=19% Similarity=0.221 Sum_probs=78.8
Q ss_pred HHHHhhhcC--CCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------
Q 037236 627 SRRVFDRLK--DKDVTSWNAIIGGHGIH-----GYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGL---------- 689 (953)
Q Consensus 627 A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~---------- 689 (953)
.+..|.... ++|-.+|-+++..+..+ +..+=--..++.|.+-|+.-|..+|..|++.+-+..-
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 355666666 67888888888887654 4566667778899999999999999999987654322
Q ss_pred ------HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCH
Q 037236 690 ------VENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKL 726 (953)
Q Consensus 690 ------~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~ 726 (953)
-+=++.++++| +.+|+.||.+.-..|+.+++|.|..
T Consensus 133 ~HYP~QQ~C~I~vLeqM-E~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQM-EWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hhCchhhhHHHHHHHHH-HHcCCCCchHHHHHHHHHhcccccc
Confidence 23478999999 7899999999999999999999864
No 256
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.86 E-value=8.1 Score=43.83 Aligned_cols=183 Identities=10% Similarity=0.022 Sum_probs=117.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCH-----HHHHHHHHHHH----hcCCHHHHHHHHHHHHHhcCCCCChhH
Q 037236 643 NAIIGGHGIHGYGKEAIELFEKMLALG-HKPDT-----FTFVGILMACN----HAGLVENGLKYFSQMQKLHAVKPKLEH 712 (953)
Q Consensus 643 ~~li~~~~~~g~~~~A~~l~~~m~~~g-~~P~~-----~t~~~ll~a~~----~~g~~~~a~~~~~~m~~~~~~~p~~~~ 712 (953)
..+++...-.|+-+.+++++.+..+.+ +.-.. .+|..++..+. .....+.+.++++.+.+.| |+...
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y---P~s~l 268 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY---PNSAL 268 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---CCcHH
Confidence 345666677788888888888766532 21111 12333333332 2456788999999887754 66444
Q ss_pred HHHH-HHHHhhcCCHHHHHHHHHhCCC------CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchH-HHHHH
Q 037236 713 YACV-VDMLGRAGKLDDAFKLIIEMPE------EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENY-VLVSN 784 (953)
Q Consensus 713 ~~~l-v~~l~~~g~~~eA~~~~~~~~~------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~-~~l~~ 784 (953)
|... ..++...|++++|++.+++... +-....+--+.+.+...+++++|...+.++.+.+.-....| ...+-
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 4433 5667778999999999987543 11233455566677788899999999999999877655555 45566
Q ss_pred HHHhcCCc-------hHHHHHHHHHHHCCCccCCceeEEEeCCEEEEEeeCCCCCccHHHHHHHHHHHH
Q 037236 785 IYAGSEKW-------DDVRMMRQRMKERGLQKEAGCSWIELGGNIHSFVVGDNMHPEWEEIRGMWGRLE 846 (953)
Q Consensus 785 ~y~~~g~~-------~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~ 846 (953)
.|...|+. ++|..++++......+ ++| ++-|--+.+..+.++..
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k-----------------~~g-k~lp~E~Fv~RK~~~~~ 399 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPKLKQK-----------------KAG-KSLPLEKFVIRKAQKYE 399 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHHHHhh-----------------hcc-CCCChHHHHHHHHHHHH
Confidence 77788888 7777776666442211 122 45576667776666554
No 257
>PRK09687 putative lyase; Provisional
Probab=92.82 E-value=14 Score=38.61 Aligned_cols=234 Identities=10% Similarity=0.004 Sum_probs=109.8
Q ss_pred chhhHhhHHHHHHhcCChhHHHHHHHhcccCCcccHHHHHHHHHhcCCh----hHHHHHHHHHHHcCCCCChhhHHHHHH
Q 037236 506 DSFTGISLLSLYMHCEKSSSARVLFDEMEDKSLVSWNTMIAGYSQNKLP----VEAIVLFRRMFSIGVQPCEISIVSILS 581 (953)
Q Consensus 506 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~p~~~t~~~ll~ 581 (953)
|..+....+..+.+.|..+-...+..-+..+|...-...+.++.+.|+. ++++..+..+... .|+...-...+.
T Consensus 36 d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~ 113 (280)
T PRK09687 36 NSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAIN 113 (280)
T ss_pred CHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHH
Confidence 4444444455555555433333333323344544444455566666653 3566666665333 455555445555
Q ss_pred HhccccchH--HHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcC-ChHHH
Q 037236 582 ACSQLSALR--LGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHG-YGKEA 658 (953)
Q Consensus 582 a~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A 658 (953)
++.+.+.-. ........+...-.+++..+-...+.++++.|+.+....+..-+..+|...-..-+.++...+ +...+
T Consensus 114 aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~ 193 (280)
T PRK09687 114 ATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDI 193 (280)
T ss_pred HHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHH
Confidence 554443211 011222222222223345555555666666665433333333333444444444444454432 23455
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC
Q 037236 659 IELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPE 738 (953)
Q Consensus 659 ~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~ 738 (953)
...+..+.. .+|...-...+.++.+.|.. ++...+-...+. ++ .....+.+++..|.- +|...+..+..
T Consensus 194 ~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~----~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 194 REAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKK----GT--VGDLIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred HHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcC----Cc--hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence 555555554 45555666666666666663 444444433331 22 123455666666663 56665555543
Q ss_pred -CCChhHHHHHHHHH
Q 037236 739 -EADAGIWSSLLRSC 752 (953)
Q Consensus 739 -~~~~~~~~~ll~~~ 752 (953)
.||..+-..-+.+|
T Consensus 263 ~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 263 KFDDNEIITKAIDKL 277 (280)
T ss_pred hCCChhHHHHHHHHH
Confidence 45555444444433
No 258
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.79 E-value=3.5 Score=38.19 Aligned_cols=91 Identities=19% Similarity=0.146 Sum_probs=64.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCChhHHHHHHHHHHhcCC
Q 037236 680 ILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE-EADAGIWSSLLRSCRTYGA 757 (953)
Q Consensus 680 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~~~~~~~~ll~~~~~~g~ 757 (953)
+++.-...++.+++..++..+.- +.|. .++-..-+..+.+.|++.+|+.+++++.. .|....-.+|+..|.....
T Consensus 16 ~~~~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~ 92 (160)
T PF09613_consen 16 VLSVALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALG 92 (160)
T ss_pred HHHHHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcC
Confidence 33444577788999999888854 5666 33334445667889999999999998865 3555666788888876655
Q ss_pred hhHHHHHHHHHhccCC
Q 037236 758 LKMGEKVAKTLLELEP 773 (953)
Q Consensus 758 ~~~a~~~~~~~~~l~p 773 (953)
-..=...++.+++..|
T Consensus 93 D~~Wr~~A~evle~~~ 108 (160)
T PF09613_consen 93 DPSWRRYADEVLESGA 108 (160)
T ss_pred ChHHHHHHHHHHhcCC
Confidence 5566666777777665
No 259
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=92.76 E-value=0.86 Score=40.79 Aligned_cols=83 Identities=17% Similarity=0.251 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH--------------HHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC--
Q 037236 674 TFTFVGILMACNHAGLVENGLKYFSQM--------------QKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMP-- 737 (953)
Q Consensus 674 ~~t~~~ll~a~~~~g~~~~a~~~~~~m--------------~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~-- 737 (953)
..++..++.++++.|+++....+.++. ....++.|+.....+++.+|+..|++..|+++++...
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 344555555555555555555544332 1223455777778888888888888888888776543
Q ss_pred --CCCChhHHHHHHHHHHhcC
Q 037236 738 --EEADAGIWSSLLRSCRTYG 756 (953)
Q Consensus 738 --~~~~~~~~~~ll~~~~~~g 756 (953)
.+-+..+|..|+.=+...-
T Consensus 82 Y~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred cCCCCCHHHHHHHHHHHHHhc
Confidence 3344677887777655443
No 260
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.71 E-value=3.4 Score=45.21 Aligned_cols=58 Identities=17% Similarity=0.212 Sum_probs=32.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhccCCC--CcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 037236 746 SSLLRSCRTYGALKMGEKVAKTLLELEPD--KAENYVLVSNIYAGSEKWDDVRMMRQRMK 803 (953)
Q Consensus 746 ~~ll~~~~~~g~~~~a~~~~~~~~~l~p~--~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 803 (953)
..|...+++.|+.++|.+.++.+++..|. +.+.+..|.+.+...+++.|+..+..+-.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 33444455666666666666666655443 34455566666666666666666555443
No 261
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.45 E-value=8.5 Score=39.40 Aligned_cols=138 Identities=13% Similarity=0.069 Sum_probs=73.5
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHH---HHHHHHHhh
Q 037236 647 GGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHY---ACVVDMLGR 722 (953)
Q Consensus 647 ~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~---~~lv~~l~~ 722 (953)
......|+..+|..+|...... .| +...-..+..++...|++++|..++..+-. .-...-+ ..-+..+.+
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~----~~~~~~~~~l~a~i~ll~q 215 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPL----QAQDKAAHGLQAQIELLEQ 215 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcc----cchhhHHHHHHHHHHHHHH
Confidence 3455667777777777776663 44 344555666667777777777777665411 1111111 223455555
Q ss_pred cCCHHHHHHHHHhCCCCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHhccC--CCCcchHHHHHHHHHhcC
Q 037236 723 AGKLDDAFKLIIEMPEEA-DAGIWSSLLRSCRTYGALKMGEKVAKTLLELE--PDKAENYVLVSNIYAGSE 790 (953)
Q Consensus 723 ~g~~~eA~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~--p~~~~~~~~l~~~y~~~g 790 (953)
+....+..++..+....| |...--.|...+...|+.+.|..-+=.++..+ -+|..+--.|..++..-|
T Consensus 216 aa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 216 AAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 555555555555554444 44555555566666666665544443333332 234444555555555555
No 262
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.37 E-value=4.2 Score=36.90 Aligned_cols=115 Identities=16% Similarity=0.132 Sum_probs=69.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhc
Q 037236 646 IGGHGIHGYGKEAIELFEKMLALGHK-P-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRA 723 (953)
Q Consensus 646 i~~~~~~g~~~~A~~l~~~m~~~g~~-P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~ 723 (953)
.....+.|++++|.+.|+.+...-.. | ....-..++.++...|++++|...+++.++.+.-.|++. |.....++..-
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd-Ya~Y~~gL~~~ 95 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD-YAYYMRGLSYY 95 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc-HHHHHHHHHHH
Confidence 44456678888888888888875211 1 345667788888888888888888888888666666533 43333333322
Q ss_pred CCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 037236 724 GKLDDAFKLIIEMPEEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKA 776 (953)
Q Consensus 724 g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~ 776 (953)
...+ ..+..+.. .=+-.+....|...++.++..-|++.
T Consensus 96 ~~~~---~~~~~~~~------------~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 96 EQDE---GSLQSFFR------------SDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHhh---hHHhhhcc------------cccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 2222 12222211 00112234477777888888888654
No 263
>PRK12798 chemotaxis protein; Reviewed
Probab=92.31 E-value=19 Score=38.95 Aligned_cols=205 Identities=11% Similarity=0.172 Sum_probs=134.4
Q ss_pred cCCHHHHHHHhhhcC----CCCHHHHHHHHHHH-HhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHH
Q 037236 621 CGCLEQSRRVFDRLK----DKDVTSWNAIIGGH-GIHGYGKEAIELFEKMLALGHKPD----TFTFVGILMACNHAGLVE 691 (953)
Q Consensus 621 ~g~~~~A~~~~~~~~----~~~~~~~~~li~~~-~~~g~~~~A~~l~~~m~~~g~~P~----~~t~~~ll~a~~~~g~~~ 691 (953)
.|+.++|.+.+..+. ++.+..+-+|+.+- ....+..+|+++|++..- .-|- .....--+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 699999999999887 34566777777764 455689999999999877 5673 344555566778999999
Q ss_pred HHHHHHHHHHHhcCCCCChhHH-HHHHHHHhhcC---CHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHH
Q 037236 692 NGLKYFSQMQKLHAVKPKLEHY-ACVVDMLGRAG---KLDDAFKLIIEMPEEADAGIWSSLLRSCRTYGALKMGEKVAKT 767 (953)
Q Consensus 692 ~a~~~~~~m~~~~~~~p~~~~~-~~lv~~l~~~g---~~~eA~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 767 (953)
++..+-....+.|.-.|=...| .-++..+.+.+ ..+.-.+++..|.-.--..+|-.+...-...|+.+.|..+.++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 9888877777777666653333 33344444433 3334344555554333355788888888899999999999999
Q ss_pred HhccCCCCcchHHHHHHHHHhc-----CCchHHHHHHHHHHHCCCccCCceeEEEeCCEEEEEeeCCCCCccHHHHHHHH
Q 037236 768 LLELEPDKAENYVLVSNIYAGS-----EKWDDVRMMRQRMKERGLQKEAGCSWIELGGNIHSFVVGDNMHPEWEEIRGMW 842 (953)
Q Consensus 768 ~~~l~p~~~~~~~~l~~~y~~~-----g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l 842 (953)
++.+-+ ....-...+++|... ...+++.+....+.. ++.+|.-..+.+.-
T Consensus 283 A~~L~~-~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~------------------------~~L~~~Dr~Ll~AA 337 (421)
T PRK12798 283 ALKLAD-PDSADAARARLYRGAALVASDDAESALEELSQIDR------------------------DKLSERDRALLEAA 337 (421)
T ss_pred HHHhcc-CCCcchHHHHHHHHHHccCcccHHHHHHHHhcCCh------------------------hhCChhhHHHHHHH
Confidence 999963 344445566666543 344444443332211 23556556666666
Q ss_pred HHHHHHHHhc
Q 037236 843 GRLEEQISKI 852 (953)
Q Consensus 843 ~~l~~~~~~~ 852 (953)
..+...+++.
T Consensus 338 ~~va~~V~~~ 347 (421)
T PRK12798 338 RSVARQVRRA 347 (421)
T ss_pred HHHHHHHhcC
Confidence 6666666543
No 264
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.13 E-value=3 Score=47.23 Aligned_cols=81 Identities=17% Similarity=0.220 Sum_probs=36.8
Q ss_pred CCHHHHHHHhhhcCC--CCHHHHHHHH-HHHHhcCChHHHHHHHHHHHHCC--CCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 037236 622 GCLEQSRRVFDRLKD--KDVTSWNAII-GGHGIHGYGKEAIELFEKMLALG--HKP-DTFTFVGILMACNHAGLVENGLK 695 (953)
Q Consensus 622 g~~~~A~~~~~~~~~--~~~~~~~~li-~~~~~~g~~~~A~~l~~~m~~~g--~~P-~~~t~~~ll~a~~~~g~~~~a~~ 695 (953)
...+.|.++++.+.. |+...|.-.- ..+...|+.++|++.|++..... .+. ....+.-+...+.-..+|++|..
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 344555555555542 4444443322 23344555555555555443210 000 22333334444455555555555
Q ss_pred HHHHHHH
Q 037236 696 YFSQMQK 702 (953)
Q Consensus 696 ~~~~m~~ 702 (953)
.|..+.+
T Consensus 327 ~f~~L~~ 333 (468)
T PF10300_consen 327 YFLRLLK 333 (468)
T ss_pred HHHHHHh
Confidence 5555544
No 265
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.07 E-value=6.8 Score=39.30 Aligned_cols=67 Identities=12% Similarity=0.086 Sum_probs=44.9
Q ss_pred HhcCChhHHHHHHHhcccCCcc------cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhc
Q 037236 518 MHCEKSSSARVLFDEMEDKSLV------SWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACS 584 (953)
Q Consensus 518 ~~~g~~~~A~~~f~~~~~~~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 584 (953)
.+.|++++|.+.|+.+..+.+. +--.++-++-+.+++++|+..+++....-..-...-|...|.+.+
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 4568999999999988754322 233455677889999999999999887543333344444444443
No 266
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.05 E-value=14 Score=38.66 Aligned_cols=122 Identities=17% Similarity=0.124 Sum_probs=69.1
Q ss_pred HHHHhccccchHHHHHHHHHHHHcC-----CCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC-------CCCHH------
Q 037236 579 ILSACSQLSALRLGKETHCYALKAI-----LTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK-------DKDVT------ 640 (953)
Q Consensus 579 ll~a~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------~~~~~------ 640 (953)
+-.|...++.++.+.+.|+.+.+.. ......++.+|...|.+..++++|.-...+.. -.|..
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 4445555666777777776655431 12345677788888888888887665544332 12222
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037236 641 SWNAIIGGHGIHGYGKEAIELFEKMLA----LGHKP-DTFTFVGILMACNHAGLVENGLKYFSQM 700 (953)
Q Consensus 641 ~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m 700 (953)
+.--|..++...|+..+|.+.-++..+ .|-.| -......+.+.|...|+.|.|+.-|++.
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 122244456666776666666666443 23222 2233445566666777777766665554
No 267
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.00 E-value=4.6 Score=37.09 Aligned_cols=85 Identities=13% Similarity=0.039 Sum_probs=51.8
Q ss_pred HHHHHHhhcCCChhhHhHHHHHHHHhCCCCChhHHHHHHHHhhccCChHHHHHHhccCCCCCeecHHHHHHHHHcCCCch
Q 037236 169 PCVIKACGGIADVSFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGSSENGFSC 248 (953)
Q Consensus 169 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~ 248 (953)
..++..+...+.......+++.+.+.+. .++...|.++..|++.. .......++. ..+......++..+.+.+.++
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~ 86 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYE 86 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHH
Confidence 3455555555566666666666666653 56677888888887653 3444455442 234444555666666667777
Q ss_pred HHHHHHHHh
Q 037236 249 ESFDLLIKM 257 (953)
Q Consensus 249 ~A~~l~~~m 257 (953)
++.-++.++
T Consensus 87 ~~~~l~~k~ 95 (140)
T smart00299 87 EAVELYKKD 95 (140)
T ss_pred HHHHHHHhh
Confidence 777777666
No 268
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=91.99 E-value=21 Score=38.65 Aligned_cols=143 Identities=16% Similarity=0.100 Sum_probs=94.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHH-HH
Q 037236 638 DVTSWNAIIGGHGIHGYGKEAIELFEKMLALG-HKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHY-AC 715 (953)
Q Consensus 638 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-~~ 715 (953)
=...|...+..-.+..-.+.|..+|-+..+.| +.|+...+++++.-++ .|+...|..+|+.-...+ ||...| .-
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f---~d~~~y~~k 471 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF---PDSTLYKEK 471 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC---CCchHHHHH
Confidence 34566667776666666777788888888777 4556666776666544 567777778877665533 443333 33
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCC--CCC--hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHH
Q 037236 716 VVDMLGRAGKLDDAFKLIIEMPE--EAD--AGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSN 784 (953)
Q Consensus 716 lv~~l~~~g~~~eA~~~~~~~~~--~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 784 (953)
.++.+.+.++-+.|..+|+.... +.+ ..+|..++..-...|++..+...-++..++-|.....-+.++.
T Consensus 472 yl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sr 544 (660)
T COG5107 472 YLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSR 544 (660)
T ss_pred HHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHH
Confidence 45667778888888888875432 222 4578888887788888888888888888888866555444443
No 269
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=91.89 E-value=0.47 Score=48.49 Aligned_cols=95 Identities=16% Similarity=0.072 Sum_probs=63.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC--hhHHHHHHHHHHhcC
Q 037236 680 ILMACNHAGLVENGLKYFSQMQKLHAVKP-KLEHYACVVDMLGRAGKLDDAFKLIIEMPEEAD--AGIWSSLLRSCRTYG 756 (953)
Q Consensus 680 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~--~~~~~~ll~~~~~~g 756 (953)
-.+-|.++|.+++|+..|...+. +.| ++..|..-..+|.+..++..|+.=.+....-.+ ...|.--..+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 35667788888888888876654 445 456666667778888888777766655432111 234444444555567
Q ss_pred ChhHHHHHHHHHhccCCCCcc
Q 037236 757 ALKMGEKVAKTLLELEPDKAE 777 (953)
Q Consensus 757 ~~~~a~~~~~~~~~l~p~~~~ 777 (953)
+.++|.+-++.+++++|++..
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIE 200 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHH
Confidence 888888888888888887543
No 270
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=91.81 E-value=2.2 Score=37.42 Aligned_cols=56 Identities=21% Similarity=0.202 Sum_probs=32.5
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 037236 648 GHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHA 705 (953)
Q Consensus 648 ~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 705 (953)
+++..|+.+.|++.|.+.+. +-| +...|+.-..++.-+|+.++|+.=+++.++..|
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag 108 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAG 108 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcC
Confidence 34555666666666666655 344 455566666666666666666666555555333
No 271
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.76 E-value=30 Score=40.34 Aligned_cols=105 Identities=17% Similarity=0.052 Sum_probs=58.9
Q ss_pred HHHHHcCCCchHHHHHHHHhhhccCCCCCChhhHHHHHHhhhcCCCchHHHHHHHHHHHhCCCCCchHHHHHHHhhHhcC
Q 037236 238 ICGSSENGFSCESFDLLIKMMGCEEGFIPDVATVVTVLPVCAGEGNVDLGILVHGLAVKLGLTRELMVNNALVDMYAKCG 317 (953)
Q Consensus 238 i~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 317 (953)
|.-+.+.+.+++|+++.+.- .|..|... -..++...|+.+.-.|
T Consensus 363 i~Wll~~k~yeeAl~~~k~~----~~~~~~~~--------------------------------i~kv~~~yI~HLl~~~ 406 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKAS----IGNEERFV--------------------------------IKKVGKTYIDHLLFEG 406 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhc----cCCccccc--------------------------------hHHHHHHHHHHHHhcc
Confidence 55667788888888877665 23322110 1223455666666677
Q ss_pred ChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHhccCCCCCchhhHHHHHHHhcc
Q 037236 318 FLSEAQILFDKNNNKNVVSWNTIIGAFSMAGDVCGTFDLLRKMQMKEEEMKPNEVTVLNVLTSCSE 383 (953)
Q Consensus 318 ~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~p~~~t~~~ll~~~~~ 383 (953)
++++|-...-.|...+..-|---+.-+...++......++ .... .+.+...|..+|..+..
T Consensus 407 ~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~l---Pt~~--~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 407 KYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPYL---PTGP--PRLKPLVYEMVLVEFLA 467 (846)
T ss_pred hHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhccC---CCCC--cccCchHHHHHHHHHHH
Confidence 7777777766666666666666666666666554433322 1111 12344456666655544
No 272
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=91.60 E-value=13 Score=40.10 Aligned_cols=72 Identities=10% Similarity=0.031 Sum_probs=45.1
Q ss_pred hHHHHHHhcCChhHHHHHHHhcccC---Ccc----cHHHHHHHHHh---cCChhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 037236 512 SLLSLYMHCEKSSSARVLFDEMEDK---SLV----SWNTMIAGYSQ---NKLPVEAIVLFRRMFSIGVQPCEISIVSILS 581 (953)
Q Consensus 512 ~li~~y~~~g~~~~A~~~f~~~~~~---~~~----~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 581 (953)
.|+-.|....+++...++.+.+... ++. .-....-++.+ .|+.++|++++..+......+++.|+..+-.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3344577777777777877777653 111 11123344555 7888888888888666666677777766555
Q ss_pred Hh
Q 037236 582 AC 583 (953)
Q Consensus 582 a~ 583 (953)
.+
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 44
No 273
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.50 E-value=2.1 Score=43.14 Aligned_cols=101 Identities=13% Similarity=0.097 Sum_probs=69.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC----CCC-hhHHHHHHH
Q 037236 677 FVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE----EAD-AGIWSSLLR 750 (953)
Q Consensus 677 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~----~~~-~~~~~~ll~ 750 (953)
|..-+ .+...|++.+|..-|...++.|.-.+- ...+-.|...+...|++++|...|..+.. .|- +..+--|..
T Consensus 145 Y~~A~-~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAAL-DLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHH-HHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 44433 445678899999999999887644332 55666788888899999988888765532 221 234444555
Q ss_pred HHHhcCChhHHHHHHHHHhccCCCCcch
Q 037236 751 SCRTYGALKMGEKVAKTLLELEPDKAEN 778 (953)
Q Consensus 751 ~~~~~g~~~~a~~~~~~~~~l~p~~~~~ 778 (953)
.....|+.+.|...++++++--|+.+.+
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 5667788888888888888888866643
No 274
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=91.07 E-value=21 Score=38.89 Aligned_cols=150 Identities=12% Similarity=0.026 Sum_probs=82.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CCCCChhH
Q 037236 637 KDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP---DTFTFVGILMACNHAGLVENGLKYFSQMQKLH-AVKPKLEH 712 (953)
Q Consensus 637 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-~~~p~~~~ 712 (953)
....+|..++..+.+.|+++.|...+.++...+..+ +......-+...-..|+.++|...++...+.. .-..+...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 455678888888888888888888888887743222 23344444556667788888888877776511 11101111
Q ss_pred HHHHHHHHhhcCCHHHHHHH-HHhCCCCCChhHHHHHHHHHHhc------CChhHHHHHHHHHhccCCCCcchHHHHHHH
Q 037236 713 YACVVDMLGRAGKLDDAFKL-IIEMPEEADAGIWSSLLRSCRTY------GALKMGEKVAKTLLELEPDKAENYVLVSNI 785 (953)
Q Consensus 713 ~~~lv~~l~~~g~~~eA~~~-~~~~~~~~~~~~~~~ll~~~~~~------g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 785 (953)
...+...+.. ..+..... ........-+.++..+..-+... ++.+.+...++.+.++.|+...++..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111100000 00000000 00000000012233333333333 788899999999999999999888888887
Q ss_pred HHh
Q 037236 786 YAG 788 (953)
Q Consensus 786 y~~ 788 (953)
+..
T Consensus 302 ~~~ 304 (352)
T PF02259_consen 302 NDK 304 (352)
T ss_pred HHH
Confidence 764
No 275
>PRK11619 lytic murein transglycosylase; Provisional
Probab=90.99 E-value=40 Score=39.97 Aligned_cols=114 Identities=11% Similarity=0.049 Sum_probs=55.0
Q ss_pred CChHHHHHHHHHHHHCC-CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHH
Q 037236 653 GYGKEAIELFEKMLALG-HKPDT--FTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDA 729 (953)
Q Consensus 653 g~~~~A~~l~~~m~~~g-~~P~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA 729 (953)
.+.+.|..++.+..... ..+.. .....+.......+..+++..+++.... ...+......-+..-.+.++++.+
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~---~~~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIM---RSQSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccc---ccCCcHHHHHHHHHHHHccCHHHH
Confidence 34566777776654432 22222 2222332222232224556666554321 111223333334444477777777
Q ss_pred HHHHHhCCCC-CChhHHHH-HHHHHHhcCChhHHHHHHHHHh
Q 037236 730 FKLIIEMPEE-ADAGIWSS-LLRSCRTYGALKMGEKVAKTLL 769 (953)
Q Consensus 730 ~~~~~~~~~~-~~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~ 769 (953)
...|..|+.. .+..-|.- +..+....|+.+.|...++++.
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 7777777541 12222322 3334455677777777777763
No 276
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=90.83 E-value=0.16 Score=47.22 Aligned_cols=85 Identities=14% Similarity=0.067 Sum_probs=67.1
Q ss_pred HHHHHhhcCCChhhHhHHHHHHHHhCCCCChhHHHHHHHHhhccCChHHHHHHhccCCCCCeecHHHHHHHHHcCCCchH
Q 037236 170 CVIKACGGIADVSFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGSSENGFSCE 249 (953)
Q Consensus 170 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~ 249 (953)
.+++.+.+.+.+....++++.+.+.+...+....+.++..|++.++.+...++++.... .....++..+-+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 35677777888888888999998877777899999999999999988999998885433 444567777888888888
Q ss_pred HHHHHHHh
Q 037236 250 SFDLLIKM 257 (953)
Q Consensus 250 A~~l~~~m 257 (953)
|.-++.++
T Consensus 89 a~~Ly~~~ 96 (143)
T PF00637_consen 89 AVYLYSKL 96 (143)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHc
Confidence 88888877
No 277
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.76 E-value=16 Score=36.14 Aligned_cols=26 Identities=8% Similarity=-0.012 Sum_probs=16.6
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHH
Q 037236 540 SWNTMIAGYSQNKLPVEAIVLFRRMF 565 (953)
Q Consensus 540 ~~~~li~~~~~~g~~~~A~~~~~~m~ 565 (953)
.|..-..+|...+++++|...+.+..
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 35555566777777777776665554
No 278
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.20 E-value=20 Score=35.88 Aligned_cols=229 Identities=17% Similarity=0.173 Sum_probs=137.7
Q ss_pred cCChhHHHHHHHhccc--C-----CcccHHHHHHHHHhcCChhHHHHHHHHHHH---cCC--CCChhhHHHHHHHhcccc
Q 037236 520 CEKSSSARVLFDEMED--K-----SLVSWNTMIAGYSQNKLPVEAIVLFRRMFS---IGV--QPCEISIVSILSACSQLS 587 (953)
Q Consensus 520 ~g~~~~A~~~f~~~~~--~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~--~p~~~t~~~ll~a~~~~~ 587 (953)
...+++|..-|+...+ + ...+...||..+.+.|++++.++.+.+|.. +.+ .-+..+.++++.-.+...
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 3466777777776643 1 223455678888889999998888888753 222 234556777777666655
Q ss_pred chHHHHHHHHHHHH----c-CCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCC--------CC-------HHHHHHHHH
Q 037236 588 ALRLGKETHCYALK----A-ILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKD--------KD-------VTSWNAIIG 647 (953)
Q Consensus 588 ~~~~a~~~~~~~~~----~-~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--------~~-------~~~~~~li~ 647 (953)
..+.-..+++-..+ . +-..--.+-+-|...|...|.+..-.+++.++.. .| ...|..-|.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 55555555433221 1 1111222335577778777888877777776641 11 235666778
Q ss_pred HHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHH-----hcCCHHHHHHHHHHHHHhcCCCCChh-----HHHHH
Q 037236 648 GHGIHGYGKEAIELFEKMLALG-HKPDTFTFVGILMACN-----HAGLVENGLKYFSQMQKLHAVKPKLE-----HYACV 716 (953)
Q Consensus 648 ~~~~~g~~~~A~~l~~~m~~~g-~~P~~~t~~~ll~a~~-----~~g~~~~a~~~~~~m~~~~~~~p~~~-----~~~~l 716 (953)
.|....+-.+-..++++.+.-. .-| ......++.-|. +.|.+++|..=|-++.+.|.-.-++. -|-.|
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIP-HPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVL 278 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIP-HPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVL 278 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCC-chHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHH
Confidence 8888888888888898877632 123 334456676663 67888888765555545554433322 25556
Q ss_pred HHHHhhcCC----HHHHHHHHHhCCC--CCChhHHHHHHHHHHhc
Q 037236 717 VDMLGRAGK----LDDAFKLIIEMPE--EADAGIWSSLLRSCRTY 755 (953)
Q Consensus 717 v~~l~~~g~----~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~ 755 (953)
..++.+.|- -.||. |. .|.......|+.+|...
T Consensus 279 ANMLmkS~iNPFDsQEAK------PyKNdPEIlAMTnlv~aYQ~N 317 (440)
T KOG1464|consen 279 ANMLMKSGINPFDSQEAK------PYKNDPEILAMTNLVAAYQNN 317 (440)
T ss_pred HHHHHHcCCCCCcccccC------CCCCCHHHHHHHHHHHHHhcc
Confidence 677777662 12221 22 34556678888887654
No 279
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=90.07 E-value=0.74 Score=47.12 Aligned_cols=93 Identities=13% Similarity=0.033 Sum_probs=65.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhh
Q 037236 645 IIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGR 722 (953)
Q Consensus 645 li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~ 722 (953)
-.+-|.++|.+++|+..|.+.+. +.| |.+++..-..||.+...+..|..=....+. +.-. +..|+.-..+-..
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia---Ld~~Y~KAYSRR~~AR~~ 177 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA---LDKLYVKAYSRRMQARES 177 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH---hhHHHHHHHHHHHHHHHH
Confidence 36679999999999999999888 688 999999999999999999988877776643 1111 2333333333333
Q ss_pred cCCHHHHHHHHHhCCC-CCCh
Q 037236 723 AGKLDDAFKLIIEMPE-EADA 742 (953)
Q Consensus 723 ~g~~~eA~~~~~~~~~-~~~~ 742 (953)
.|...||.+=++.... +|+.
T Consensus 178 Lg~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 178 LGNNMEAKKDCETVLALEPKN 198 (536)
T ss_pred HhhHHHHHHhHHHHHhhCccc
Confidence 5566677666665543 6663
No 280
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=89.99 E-value=0.95 Score=31.72 Aligned_cols=30 Identities=30% Similarity=0.414 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 037236 641 SWNAIIGGHGIHGYGKEAIELFEKMLALGHKP 672 (953)
Q Consensus 641 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P 672 (953)
+|..+...|...|++++|+++|++.++ ..|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P 32 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA--LDP 32 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCc
Confidence 455566666666666666666666666 355
No 281
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=89.91 E-value=1.9 Score=43.20 Aligned_cols=99 Identities=9% Similarity=0.022 Sum_probs=76.8
Q ss_pred HHHHHHhcc--cCCcccHHHHHHHHHhc-----CChhHHHHHHHHHHHcCCCCChhhHHHHHHHhcccc-----------
Q 037236 526 ARVLFDEME--DKSLVSWNTMIAGYSQN-----KLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLS----------- 587 (953)
Q Consensus 526 A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~----------- 587 (953)
.++.|...+ ++|-.+|-+++..+... +..+-....++.|.+-|+.-|..+|..||+.+-+-.
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 455666666 67778888888887654 455666667788999999999999999998876532
Q ss_pred -----chHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCH
Q 037236 588 -----ALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCL 624 (953)
Q Consensus 588 -----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 624 (953)
.-+-+..++++|...|+.||..+-..|++++++.|-.
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 2345778888999999999999999999998887753
No 282
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=89.78 E-value=7.1 Score=43.65 Aligned_cols=102 Identities=19% Similarity=0.250 Sum_probs=61.0
Q ss_pred HHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037236 616 DMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLK 695 (953)
Q Consensus 616 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~ 695 (953)
++..++|+++.|.++..+.. +...|..|......+|+.+-|.+.|.+..+ |..|+-.|.-.|+.+.-.+
T Consensus 326 eLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~k 394 (443)
T PF04053_consen 326 ELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSK 394 (443)
T ss_dssp HHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHH
T ss_pred HHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHH
Confidence 45556888888888877655 666888888888888888888888876432 4455556666777655555
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHh
Q 037236 696 YFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIE 735 (953)
Q Consensus 696 ~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~ 735 (953)
+-+.... .| -++.....+.-.|+.++..+++.+
T Consensus 395 l~~~a~~-~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 395 LAKIAEE-RG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHH-TT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHH-cc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5544422 11 122222333344555555555544
No 283
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=89.26 E-value=0.48 Score=30.84 Aligned_cols=31 Identities=23% Similarity=0.309 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 037236 744 IWSSLLRSCRTYGALKMGEKVAKTLLELEPD 774 (953)
Q Consensus 744 ~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~ 774 (953)
+|..+...+...|+++.|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5667777778888888888888888888774
No 284
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.90 E-value=9.3 Score=39.48 Aligned_cols=153 Identities=12% Similarity=0.130 Sum_probs=93.0
Q ss_pred cCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH----HHHHHHhcCCHHHH
Q 037236 621 CGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVG----ILMACNHAGLVENG 693 (953)
Q Consensus 621 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~----ll~a~~~~g~~~~a 693 (953)
.|+..+|...++++. +.|..+|+--=.+|...|+.+.-...+++++.. ..||...|.. +..++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 577777777777776 457778877777888888888888888877764 3455533332 23344577888888
Q ss_pred HHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-------ChhHHHHHHHHHHhcCChhHHHHHH
Q 037236 694 LKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPEEA-------DAGIWSSLLRSCRTYGALKMGEKVA 765 (953)
Q Consensus 694 ~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~-------~~~~~~~ll~~~~~~g~~~~a~~~~ 765 (953)
.+.-++..+ ++|. .-...++...+--.|++.|+.+++.+-...- .-.-|.+-+- +...+.++.|+.++
T Consensus 195 Ek~A~ralq---iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~-~iE~aeye~aleIy 270 (491)
T KOG2610|consen 195 EKQADRALQ---INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALF-HIEGAEYEKALEIY 270 (491)
T ss_pred HHHHHhhcc---CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHh-hhcccchhHHHHHH
Confidence 887776654 4443 3334456666777888888888877654210 1122322221 12235677777776
Q ss_pred HHHh--ccCCCCcch
Q 037236 766 KTLL--ELEPDKAEN 778 (953)
Q Consensus 766 ~~~~--~l~p~~~~~ 778 (953)
++=+ +++.+|+.+
T Consensus 271 D~ei~k~l~k~Da~a 285 (491)
T KOG2610|consen 271 DREIWKRLEKDDAVA 285 (491)
T ss_pred HHHHHHHhhccchhh
Confidence 6533 345555543
No 285
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=88.82 E-value=0.15 Score=47.38 Aligned_cols=85 Identities=14% Similarity=0.101 Sum_probs=60.4
Q ss_pred HHHHhhhcCCCchHHHHHHHHHHHhCCCCCchHHHHHHHhhHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChhH
Q 037236 273 TVLPVCAGEGNVDLGILVHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFDKNNNKNVVSWNTIIGAFSMAGDVCG 352 (953)
Q Consensus 273 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~ 352 (953)
.+++.+.+.+.+.....+++.+.+.+...+....+.++..|++.++.+...++++.... .-...++..+-+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 45667777788888888888888877677788999999999999888888888874332 333455666666666666
Q ss_pred HHHHHHHH
Q 037236 353 TFDLLRKM 360 (953)
Q Consensus 353 A~~l~~~m 360 (953)
|.-++.++
T Consensus 89 a~~Ly~~~ 96 (143)
T PF00637_consen 89 AVYLYSKL 96 (143)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHc
Confidence 66666554
No 286
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=88.73 E-value=4.7 Score=38.41 Aligned_cols=56 Identities=13% Similarity=-0.009 Sum_probs=33.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037236 646 IGGHGIHGYGKEAIELFEKMLALGHKPD-----TFTFVGILMACNHAGLVENGLKYFSQMQK 702 (953)
Q Consensus 646 i~~~~~~g~~~~A~~l~~~m~~~g~~P~-----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 702 (953)
..-+..+|++++|..-|.+.++. +.|. .+.|..-..+..+.+.++.|+.-....++
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie 162 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE 162 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh
Confidence 44566777888888888777774 2221 23344444555666666666666555544
No 287
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=88.68 E-value=1.5 Score=32.21 Aligned_cols=34 Identities=24% Similarity=0.350 Sum_probs=26.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhccCCCCcchHH
Q 037236 747 SLLRSCRTYGALKMGEKVAKTLLELEPDKAENYV 780 (953)
Q Consensus 747 ~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~ 780 (953)
.+.-++.+.|+++.|.+..+.+++++|+|..+-.
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 3455788999999999999999999999886543
No 288
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=88.41 E-value=3.3 Score=38.95 Aligned_cols=83 Identities=11% Similarity=0.226 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCC----HHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHH
Q 037236 690 VENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGK----LDDAFKLIIEMPEEADAGIWSSLLRSCRTYGALKMGEKV 764 (953)
Q Consensus 690 ~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~----~~eA~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 764 (953)
+++|+.-|++.+. +.|+ ...+.|+..+|...+. ..+|.++| ++|...
T Consensus 51 iedAisK~eeAL~---I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F-------------------------~kA~~~ 102 (186)
T PF06552_consen 51 IEDAISKFEEALK---INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYF-------------------------EKATEY 102 (186)
T ss_dssp HHHHHHHHHHHHH---H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHH-------------------------HHHHHH
T ss_pred HHHHHHHHHHHHh---cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHH-------------------------HHHHHH
Confidence 4455555555544 7788 6788888888776553 33444444 467888
Q ss_pred HHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCC
Q 037236 765 AKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKERGL 807 (953)
Q Consensus 765 ~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 807 (953)
++++.+.+|+|......|--. ..|-.+..++.+.+.
T Consensus 103 FqkAv~~~P~ne~Y~ksLe~~-------~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 103 FQKAVDEDPNNELYRKSLEMA-------AKAPELHMEIHKQGL 138 (186)
T ss_dssp HHHHHHH-TT-HHHHHHHHHH-------HTHHHHHHHHHHSSS
T ss_pred HHHHHhcCCCcHHHHHHHHHH-------HhhHHHHHHHHHHHh
Confidence 888888888877554433221 234555555555444
No 289
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=88.31 E-value=36 Score=35.64 Aligned_cols=19 Identities=5% Similarity=-0.191 Sum_probs=11.8
Q ss_pred HHHhcCChhHHHHHHHHHh
Q 037236 751 SCRTYGALKMGEKVAKTLL 769 (953)
Q Consensus 751 ~~~~~g~~~~a~~~~~~~~ 769 (953)
.+...++++.|..-++.++
T Consensus 255 ~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHhhcCHHHHHHHHHHHH
Confidence 3555667777777666543
No 290
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.07 E-value=23 Score=33.99 Aligned_cols=129 Identities=16% Similarity=0.062 Sum_probs=81.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHH----
Q 037236 642 WNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFT--FVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYAC---- 715 (953)
Q Consensus 642 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t--~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~---- 715 (953)
|..++.... .+.. +.....+++....-.....+ -..+...+...|++++|...++.... .|.-+.+..
T Consensus 57 Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~----~t~De~lk~l~~l 130 (207)
T COG2976 57 YQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA----QTKDENLKALAAL 130 (207)
T ss_pred HHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc----cchhHHHHHHHHH
Confidence 333444332 3333 55566666666421111222 22344567889999999998887643 233334443
Q ss_pred -HHHHHhhcCCHHHHHHHHHhCCCCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 037236 716 -VVDMLGRAGKLDDAFKLIIEMPEEA-DAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKA 776 (953)
Q Consensus 716 -lv~~l~~~g~~~eA~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~ 776 (953)
|..++...|.+|+|+..++....+. .+..-..-+..+...|+-+.|+..++++++.+++++
T Consensus 131 RLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 131 RLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred HHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 4456788999999999998765221 233344556678889999999999999999876544
No 291
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=87.26 E-value=1.3 Score=28.76 Aligned_cols=31 Identities=23% Similarity=0.309 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 037236 641 SWNAIIGGHGIHGYGKEAIELFEKMLALGHKPD 673 (953)
Q Consensus 641 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~ 673 (953)
+|..+...|...|++++|+..|++.++ +.|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 456666666666666666666666666 4443
No 292
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=86.76 E-value=5.1 Score=38.70 Aligned_cols=100 Identities=18% Similarity=0.192 Sum_probs=54.5
Q ss_pred hcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCC-hhHHHHHHHHHHhcCChhHHH
Q 037236 686 HAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE-EAD-AGIWSSLLRSCRTYGALKMGE 762 (953)
Q Consensus 686 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~~-~~~~~~ll~~~~~~g~~~~a~ 762 (953)
..|.++-|.-=|.+... +.|+ ++.||.|.--|...|+++.|.+.|+.... .|. ..+..+-.-+..--|+++.|.
T Consensus 77 SlGL~~LAR~DftQaLa---i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq 153 (297)
T COG4785 77 SLGLRALARNDFSQALA---IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQ 153 (297)
T ss_pred hhhHHHHHhhhhhhhhh---cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhH
Confidence 44555555555554433 5566 56666666666667777777777766543 121 112212222233456777777
Q ss_pred HHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 037236 763 KVAKTLLELEPDKAENYVLVSNIYAGSEK 791 (953)
Q Consensus 763 ~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 791 (953)
+-+-+..+-+|+|| ..-.|+|....+
T Consensus 154 ~d~~~fYQ~D~~DP---fR~LWLYl~E~k 179 (297)
T COG4785 154 DDLLAFYQDDPNDP---FRSLWLYLNEQK 179 (297)
T ss_pred HHHHHHHhcCCCCh---HHHHHHHHHHhh
Confidence 77777777777776 333455554433
No 293
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.46 E-value=2.2 Score=39.53 Aligned_cols=54 Identities=20% Similarity=0.265 Sum_probs=40.5
Q ss_pred HhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCC
Q 037236 753 RTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKERG 806 (953)
Q Consensus 753 ~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 806 (953)
..+++.+.++.++..+.-+.|+.+..-..-++++...|+|.+|.++++.+.+.+
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 455677777777777777788888877788888888888888888777765543
No 294
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=86.32 E-value=6.6 Score=40.37 Aligned_cols=71 Identities=17% Similarity=0.278 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----hcCCCCChhHH
Q 037236 641 SWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQK----LHAVKPKLEHY 713 (953)
Q Consensus 641 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~~ 713 (953)
++..++..+...|+.+.+.+.++++.. ..| |...|..++.+|...|+...|+..|+.+.+ ..|+.|.....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~--~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIE--LDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHh--cCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 444555555555666666666666655 345 555566666666666666666665555533 34555554433
No 295
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=86.02 E-value=1.6 Score=28.91 Aligned_cols=24 Identities=25% Similarity=0.188 Sum_probs=13.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH
Q 037236 642 WNAIIGGHGIHGYGKEAIELFEKM 665 (953)
Q Consensus 642 ~~~li~~~~~~g~~~~A~~l~~~m 665 (953)
|+.|...|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455555566666666666666553
No 296
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.86 E-value=16 Score=33.39 Aligned_cols=83 Identities=16% Similarity=0.098 Sum_probs=51.2
Q ss_pred HhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-ChhHHHHHHHHHHhcCChhHHH
Q 037236 685 NHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPEEA-DAGIWSSLLRSCRTYGALKMGE 762 (953)
Q Consensus 685 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~ 762 (953)
...++.+++..+++.|.- +.|+ .+.-..-+..+.+.|+++||..++++....+ ....-..|+..|..-..-..=.
T Consensus 21 L~~~d~~D~e~lLdALrv---LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~Wr 97 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRV---LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAEWH 97 (153)
T ss_pred HhcCCHHHHHHHHHHHHH---hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChHHH
Confidence 347888888888888854 5565 2333334556788899999999998887643 4455556666664433222333
Q ss_pred HHHHHHhc
Q 037236 763 KVAKTLLE 770 (953)
Q Consensus 763 ~~~~~~~~ 770 (953)
..+..+++
T Consensus 98 ~~A~~~le 105 (153)
T TIGR02561 98 VHADEVLA 105 (153)
T ss_pred HHHHHHHH
Confidence 33444443
No 297
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.52 E-value=3.3 Score=37.65 Aligned_cols=53 Identities=9% Similarity=0.102 Sum_probs=47.4
Q ss_pred hcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCC
Q 037236 754 TYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKERG 806 (953)
Q Consensus 754 ~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 806 (953)
..++.+.++.+++.+--+.|+.+..-..-++++...|+|+||.++++.+.+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 37888899999999999999999999999999999999999999988887654
No 298
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=85.52 E-value=6.8 Score=36.95 Aligned_cols=33 Identities=15% Similarity=0.204 Sum_probs=26.5
Q ss_pred hHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 037236 759 KMGEKVAKTLLELEPDKAENYVLVSNIYAGSEK 791 (953)
Q Consensus 759 ~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 791 (953)
+.|..-++.++.++|+...++..++++|...+.
T Consensus 52 edAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 52 EDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 357777889999999999999999999988665
No 299
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.39 E-value=16 Score=36.25 Aligned_cols=86 Identities=13% Similarity=0.140 Sum_probs=47.2
Q ss_pred cccHHHHHHHHHhcCCCHHHHHHHHHHhhcCCCChhHHHHHHHHhccCCChhHHHHHHHHHhhhcCCCCCchhhhHHHHH
Q 037236 28 GLHFLQEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELISASTQFSNDFIINTRLITM 107 (953)
Q Consensus 28 ~~~~~~~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Li~~ 107 (953)
...|...-.+|.-.. ++++|...+.++.+...+......-.++ ++.|.-+..++. .++.-+..++.-..+
T Consensus 31 as~yekAAvafRnAk-~feKakdcLlkA~~~yEnnrslfhAAKa------yEqaamLake~~---klsEvvdl~eKAs~l 100 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAK-KFEKAKDCLLKASKGYENNRSLFHAAKA------YEQAAMLAKELS---KLSEVVDLYEKASEL 100 (308)
T ss_pred HHHHHHHHHHHHhhc-cHHHHHHHHHHHHHHHHhcccHHHHHHH------HHHHHHHHHHHH---HhHHHHHHHHHHHHH
Confidence 334555555666666 7777777777766511111111122222 233333333333 122334566777788
Q ss_pred HHhcCChhhHHHHhhc
Q 037236 108 YSLCGFPLDSRRVFDS 123 (953)
Q Consensus 108 y~~~g~~~~A~~~f~~ 123 (953)
|..+|.++.|--.+++
T Consensus 101 Y~E~GspdtAAmaleK 116 (308)
T KOG1585|consen 101 YVECGSPDTAAMALEK 116 (308)
T ss_pred HHHhCCcchHHHHHHH
Confidence 9999998888776665
No 300
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.37 E-value=7.7 Score=40.07 Aligned_cols=159 Identities=16% Similarity=0.051 Sum_probs=118.1
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHH----HHHHhhcCCH
Q 037236 651 IHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACV----VDMLGRAGKL 726 (953)
Q Consensus 651 ~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l----v~~l~~~g~~ 726 (953)
-.|+..+|-..++++++. .+.|...+...=.+|...|+.+.-...++++.. .-.|+...|..+ .-.+..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 468888999999999985 333888888888999999999999988888754 236776555544 3456789999
Q ss_pred HHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCC----CcchHHHHHHHHHhcCCchHHHHHHH
Q 037236 727 DDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPD----KAENYVLVSNIYAGSEKWDDVRMMRQ 800 (953)
Q Consensus 727 ~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~----~~~~~~~l~~~y~~~g~~~~a~~~~~ 800 (953)
++|++.-++... +.|.-.-.++.......|+..+|.+..++--..-.+ -+-.|-+.+-.|.+.+.++.|..++.
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 999999988865 345556677777788899999999887774433111 24466777888999999999999876
Q ss_pred HHHHCCCccCCc
Q 037236 801 RMKERGLQKEAG 812 (953)
Q Consensus 801 ~m~~~~~~~~~~ 812 (953)
.=--+.+.|..+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 544444555544
No 301
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=85.34 E-value=18 Score=38.11 Aligned_cols=90 Identities=14% Similarity=0.342 Sum_probs=52.8
Q ss_pred HHHHHHhhhcCC-------CCHHHHHHHHHHHHhcCC----hHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC-C--
Q 037236 625 EQSRRVFDRLKD-------KDVTSWNAIIGGHGIHGY----GKEAIELFEKMLALGHKP-DTFTFVGILMACNHAG-L-- 689 (953)
Q Consensus 625 ~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~----~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g-~-- 689 (953)
..|..+|+.|.+ ++-..+.+|+.. ..++ .+.+..+|+.+.+.|+.. |...+.+-+-++.... .
T Consensus 120 ~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~ 197 (297)
T PF13170_consen 120 QRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEK 197 (297)
T ss_pred HHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHH
Confidence 445666666652 233444444433 2222 356677888888888877 4444444444443222 2
Q ss_pred HHHHHHHHHHHHHhcCCCCChhHHHHHH
Q 037236 690 VENGLKYFSQMQKLHAVKPKLEHYACVV 717 (953)
Q Consensus 690 ~~~a~~~~~~m~~~~~~~p~~~~~~~lv 717 (953)
+..+.++++.+. ..++++...+|..+.
T Consensus 198 v~r~~~l~~~l~-~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 198 VARVIELYNALK-KNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHH-HcCCccccccccHHH
Confidence 446778888884 568888888877664
No 302
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=85.09 E-value=1.1 Score=29.67 Aligned_cols=24 Identities=17% Similarity=0.112 Sum_probs=10.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHH
Q 037236 745 WSSLLRSCRTYGALKMGEKVAKTL 768 (953)
Q Consensus 745 ~~~ll~~~~~~g~~~~a~~~~~~~ 768 (953)
|..|...|...|+++.|+.+++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444444444444444444443
No 303
>PRK09687 putative lyase; Provisional
Probab=84.83 E-value=54 Score=34.28 Aligned_cols=75 Identities=15% Similarity=0.046 Sum_probs=41.3
Q ss_pred CCccHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 037236 606 NDAFVACSIIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACN 685 (953)
Q Consensus 606 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~ 685 (953)
++..+-...+.++++.|+..-.-.+.+.+..+++ .-..+.++...|.. +|+..+.++.+. .||...-...+.+|.
T Consensus 204 ~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~~--~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 204 KNEEIRIEAIIGLALRKDKRVLSVLIKELKKGTV--GDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred CChHHHHHHHHHHHccCChhHHHHHHHHHcCCch--HHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 3555555666666666664333333333333332 23566677777774 577777777763 456555544455443
No 304
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=84.70 E-value=1.1 Score=29.41 Aligned_cols=20 Identities=20% Similarity=0.415 Sum_probs=9.8
Q ss_pred hhHHHHHHHHHhhcCCHHHH
Q 037236 710 LEHYACVVDMLGRAGKLDDA 729 (953)
Q Consensus 710 ~~~~~~lv~~l~~~g~~~eA 729 (953)
...|..|..+|...|++++|
T Consensus 13 ~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhh
Confidence 44444444445555554444
No 305
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=84.59 E-value=20 Score=41.26 Aligned_cols=183 Identities=17% Similarity=0.196 Sum_probs=108.0
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh----------hhHHHHHHHhccccchHHHHHHHHHHHH-cCC-CCC
Q 037236 540 SWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCE----------ISIVSILSACSQLSALRLGKETHCYALK-AIL-TND 607 (953)
Q Consensus 540 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----------~t~~~ll~a~~~~~~~~~a~~~~~~~~~-~~~-~~~ 607 (953)
+-..|+-.|....+++..+++.+.+++. ||. +.|...|+--.+-|+-+.|..+.--+++ .|. .|
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap- 278 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP- 278 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC-
Confidence 3445666778888888888888888763 332 2344455555566777777776544443 332 23
Q ss_pred ccHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 037236 608 AFVACSIIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHA 687 (953)
Q Consensus 608 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~ 687 (953)
+|||-||++-+- |- +-+.|...+..+.|.+.|++..+ +.|+..+=..+...+..+
T Consensus 279 --------Dm~Cl~GRIYKD------mF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aa 333 (1226)
T KOG4279|consen 279 --------DMYCLCGRIYKD------MF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAA 333 (1226)
T ss_pred --------ceeeeechhhhh------hh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHh
Confidence 456667764332 11 12335556667888999999888 688654322222222223
Q ss_pred CC-HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHH
Q 037236 688 GL-VENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSCRTYGALKMGEKVAK 766 (953)
Q Consensus 688 g~-~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 766 (953)
|. ++...++ +. -| -.|-.+++|.|.++.-.++++- .+.+++-...+|+..|..+++
T Consensus 334 G~~Fens~El-q~----Ig--------mkLn~LlgrKG~leklq~YWdV----------~~y~~asVLAnd~~kaiqAae 390 (1226)
T KOG4279|consen 334 GEHFENSLEL-QQ----IG--------MKLNSLLGRKGALEKLQEYWDV----------ATYFEASVLANDYQKAIQAAE 390 (1226)
T ss_pred hhhccchHHH-HH----HH--------HHHHHHhhccchHHHHHHHHhH----------HHhhhhhhhccCHHHHHHHHH
Confidence 32 2222221 11 11 1244567888888776666543 245556666788889999999
Q ss_pred HHhccCCC
Q 037236 767 TLLELEPD 774 (953)
Q Consensus 767 ~~~~l~p~ 774 (953)
.++++.|.
T Consensus 391 ~mfKLk~P 398 (1226)
T KOG4279|consen 391 MMFKLKPP 398 (1226)
T ss_pred HHhccCCc
Confidence 99998874
No 306
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=83.72 E-value=39 Score=31.90 Aligned_cols=39 Identities=13% Similarity=0.137 Sum_probs=25.5
Q ss_pred HHHHHHHHhCCCCCchHHHHHHHhhHhcCChhHHHHHHh
Q 037236 289 LVHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFD 327 (953)
Q Consensus 289 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~ 327 (953)
+....+.+.+++++..++..+|+.+.+.|++..-..++.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq 53 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ 53 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 344445556777777777777777777777666655554
No 307
>PRK10941 hypothetical protein; Provisional
Probab=83.56 E-value=6.9 Score=40.32 Aligned_cols=82 Identities=16% Similarity=0.140 Sum_probs=64.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCccCCceeEEEeCCEEE
Q 037236 744 IWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKERGLQKEAGCSWIELGGNIH 823 (953)
Q Consensus 744 ~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~ 823 (953)
..++|-.++...++++.|.++.+.++.+.|+++.-.--.|-+|++.|.+..|..-.+..-+.-
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~----------------- 245 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC----------------- 245 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC-----------------
Confidence 356777788899999999999999999999999988899999999999999998665554321
Q ss_pred EEeeCCCCCccHHHHHHHHHHHHHH
Q 037236 824 SFVVGDNMHPEWEEIRGMWGRLEEQ 848 (953)
Q Consensus 824 ~f~~~d~~hp~~~~i~~~l~~l~~~ 848 (953)
...|.++.|...+.+|...
T Consensus 246 ------P~dp~a~~ik~ql~~l~~~ 264 (269)
T PRK10941 246 ------PEDPISEMIRAQIHSIEQK 264 (269)
T ss_pred ------CCchhHHHHHHHHHHHhhc
Confidence 1346677777776666533
No 308
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=83.49 E-value=79 Score=35.12 Aligned_cols=157 Identities=10% Similarity=0.131 Sum_probs=95.4
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHH
Q 037236 539 VSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMY 618 (953)
Q Consensus 539 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 618 (953)
...-+++..+.++-++.-...+-.+|..-| -+...+..++..+... .-+.-..+++.+++..+. |+.....|++.|
T Consensus 67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~y 142 (711)
T COG1747 67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKY 142 (711)
T ss_pred hHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHH
Confidence 344556666777777777777777777654 4556666777776666 444555667777776665 667777788888
Q ss_pred HhcCCHHHHHHHhhhcCCC------CH---HHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcC
Q 037236 619 AKCGCLEQSRRVFDRLKDK------DV---TSWNAIIGGHGIHGYGKEAIELFEKMLAL-GHKPDTFTFVGILMACNHAG 688 (953)
Q Consensus 619 ~~~g~~~~A~~~~~~~~~~------~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~P~~~t~~~ll~a~~~~g 688 (953)
.+ ++.+.+...|.++..+ +. ..|.-++.- -..+.+..+.+..++... |..--.+.+--+-.-|+...
T Consensus 143 Ek-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~e 219 (711)
T COG1747 143 EK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENE 219 (711)
T ss_pred HH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcccc
Confidence 77 8888888888876521 11 145554431 123455555555555442 22223444445555666677
Q ss_pred CHHHHHHHHHHHHH
Q 037236 689 LVENGLKYFSQMQK 702 (953)
Q Consensus 689 ~~~~a~~~~~~m~~ 702 (953)
++++|++++..+.+
T Consensus 220 N~~eai~Ilk~il~ 233 (711)
T COG1747 220 NWTEAIRILKHILE 233 (711)
T ss_pred CHHHHHHHHHHHhh
Confidence 77777777776654
No 309
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=83.22 E-value=25 Score=33.11 Aligned_cols=134 Identities=8% Similarity=0.044 Sum_probs=78.2
Q ss_pred HHHHHHhhhccCCCCCChhhHHHHHHhhhcCCCchHHHHHHHHHHHhCCCCCchHHH-HHHHhhHhcCChhHHHHHHhcC
Q 037236 251 FDLLIKMMGCEEGFIPDVATVVTVLPVCAGEGNVDLGILVHGLAVKLGLTRELMVNN-ALVDMYAKCGFLSEAQILFDKN 329 (953)
Q Consensus 251 ~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-~li~~~~~~g~~~~A~~~f~~~ 329 (953)
++.++.+ ...+++|+...+..+++.+.+.|.+.... .++..++-+|..... .|+..-. ....+.++=-.|
T Consensus 14 lEYirSl--~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~---~~~~~~Ql~lDM 84 (167)
T PF07035_consen 14 LEYIRSL--NQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGN---QYPPAYQLGLDM 84 (167)
T ss_pred HHHHHHH--HHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHc---cChHHHHHHHHH
Confidence 3455555 57788899999999999999988765443 344455444444333 3332221 222333332233
Q ss_pred CCCCcccHHHHHHHHHcCCChhHHHHHHHHHHhccCCCCCchhhHHHHHHHhccccchHHHHHHHHHHHH
Q 037236 330 NNKNVVSWNTIIGAFSMAGDVCGTFDLLRKMQMKEEEMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLR 399 (953)
Q Consensus 330 ~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~ 399 (953)
..+=...+..++..+...|++-+|+++.+.... .+...-..++.+....+|...-..++.....
T Consensus 85 LkRL~~~~~~iievLL~~g~vl~ALr~ar~~~~------~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 85 LKRLGTAYEEIIEVLLSKGQVLEALRYARQYHK------VDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HHHhhhhHHHHHHHHHhCCCHHHHHHHHHHcCC------cccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333223466778889999999999999887532 2222334456666666665555555554444
No 310
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=83.06 E-value=4.9 Score=41.28 Aligned_cols=61 Identities=15% Similarity=0.193 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 744 IWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 744 ~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
++..++..+...|+.+.+...++++++.+|-+...|..|...|...|+...|+..++.++.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4455666677778888888888888888888888888888888888888888888877765
No 311
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=82.78 E-value=1.4e+02 Score=37.41 Aligned_cols=139 Identities=10% Similarity=-0.010 Sum_probs=62.1
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 037236 607 DAFVACSIIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNH 686 (953)
Q Consensus 607 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~ 686 (953)
|..+-...++.+...+.- ....+...+..+|...-...+.++...+..+. +.... -.||...-.....++..
T Consensus 697 d~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~ 768 (897)
T PRK13800 697 DPVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLAT 768 (897)
T ss_pred CHHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHH
Confidence 444444444544433211 11233344445555554555555555443321 11222 24455555555555555
Q ss_pred cCCHHH-HHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCC
Q 037236 687 AGLVEN-GLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSCRTYGA 757 (953)
Q Consensus 687 ~g~~~~-a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 757 (953)
.+..+. +...+..+.+ .++...-...+..+++.|.-+.+...+..+...++..+=..-+.++...+.
T Consensus 769 ~~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~ 836 (897)
T PRK13800 769 LGAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA 836 (897)
T ss_pred hccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc
Confidence 554332 2233333322 344555556666666666554443334444444554444444444444443
No 312
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=82.53 E-value=35 Score=30.41 Aligned_cols=80 Identities=11% Similarity=0.123 Sum_probs=46.4
Q ss_pred cCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037236 621 CGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQM 700 (953)
Q Consensus 621 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m 700 (953)
||++......+-.+. .+......-+..+...|+-++-.+++.++... -+|++..+..+.+||.+.|+..++.+++.++
T Consensus 69 C~NlKrVi~C~~~~n-~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~A 146 (161)
T PF09205_consen 69 CGNLKRVIECYAKRN-KLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEA 146 (161)
T ss_dssp -S-THHHHHHHHHTT----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hcchHHHHHHHHHhc-chHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 444444444443332 22333444566677788888888888777653 3677778888888888888888888888877
Q ss_pred HH
Q 037236 701 QK 702 (953)
Q Consensus 701 ~~ 702 (953)
.+
T Consensus 147 Ce 148 (161)
T PF09205_consen 147 CE 148 (161)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 313
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=82.50 E-value=2.9 Score=26.95 Aligned_cols=27 Identities=37% Similarity=0.404 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 037236 641 SWNAIIGGHGIHGYGKEAIELFEKMLA 667 (953)
Q Consensus 641 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 667 (953)
.|..+...|...|++++|++.|++.++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 355556666666666666666666665
No 314
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.43 E-value=44 Score=31.40 Aligned_cols=121 Identities=11% Similarity=0.131 Sum_probs=80.8
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChh-HHHHH--HHHHhhcC
Q 037236 649 HGIHGYGKEAIELFEKMLALGHKPDT-FTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLE-HYACV--VDMLGRAG 724 (953)
Q Consensus 649 ~~~~g~~~~A~~l~~~m~~~g~~P~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~l--v~~l~~~g 724 (953)
+++.|..++|+..|.++.+.|...-+ ....-........|+...|...|+++-.+..+ |.+. -..-| ..++...|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~-P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSI-PQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCC-cchhhHHHHHHHHHHHhccc
Confidence 56677888888888888887654322 22334455667888899999999988654332 3221 12222 23466788
Q ss_pred CHHHHHHHHHhCCCCCC---hhHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 037236 725 KLDDAFKLIIEMPEEAD---AGIWSSLLRSCRTYGALKMGEKVAKTLLE 770 (953)
Q Consensus 725 ~~~eA~~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 770 (953)
.+++....++.+..+.+ ...-.+|.-+-.+.|++..|...++++..
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 88888888877654333 33445677777888899998888888776
No 315
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=81.48 E-value=1.2e+02 Score=35.92 Aligned_cols=76 Identities=13% Similarity=0.097 Sum_probs=39.4
Q ss_pred HHHHHHHHHH-hCCCCC--chHHHHHHHhhH-hcCChhHHHHHHhcCC---CCCccc------HHHHHHHHHcCCChhHH
Q 037236 287 GILVHGLAVK-LGLTRE--LMVNNALVDMYA-KCGFLSEAQILFDKNN---NKNVVS------WNTIIGAFSMAGDVCGT 353 (953)
Q Consensus 287 a~~~~~~~~~-~g~~~~--~~~~~~li~~~~-~~g~~~~A~~~f~~~~---~~d~~~------~~~li~~~~~~g~~~~A 353 (953)
|.+.++.+.+ ..++|. ..++-.+...|. ...+++.|+..+++.. +++... -..++..+.+.+... |
T Consensus 40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a 118 (608)
T PF10345_consen 40 AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-A 118 (608)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-H
Confidence 4555666663 223332 334455566665 4567888888877532 121111 123344444444444 7
Q ss_pred HHHHHHHHhc
Q 037236 354 FDLLRKMQMK 363 (953)
Q Consensus 354 ~~l~~~m~~~ 363 (953)
+..+++..+.
T Consensus 119 ~~~l~~~I~~ 128 (608)
T PF10345_consen 119 LKNLDKAIED 128 (608)
T ss_pred HHHHHHHHHH
Confidence 7777776554
No 316
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.41 E-value=48 Score=31.16 Aligned_cols=121 Identities=15% Similarity=0.124 Sum_probs=74.9
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHH
Q 037236 548 YSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQS 627 (953)
Q Consensus 548 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 627 (953)
+++.++.++|+.-|.++.+.|...=+ .| ..--........|+-..|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~Yp----vL------------------------------A~mr~at~~a~kgdta~A 113 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYP----VL------------------------------ARMRAATLLAQKGDTAAA 113 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcch----HH------------------------------HHHHHHHHHhhcccHHHH
Confidence 46677888888888888776543210 00 001123345567888888
Q ss_pred HHHhhhcCC----CCHHHHHH-H--HHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037236 628 RRVFDRLKD----KDVTSWNA-I--IGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQ 699 (953)
Q Consensus 628 ~~~~~~~~~----~~~~~~~~-l--i~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~ 699 (953)
...|+++.. |-+.-=.+ + .-.+..+|.+++.....+.+-..| .| -...-..|.-+-.+.|++.+|.++|..
T Consensus 114 V~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~-n~mR~sArEALglAa~kagd~a~A~~~F~q 192 (221)
T COG4649 114 VAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDG-NPMRHSAREALGLAAYKAGDFAKAKSWFVQ 192 (221)
T ss_pred HHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCC-ChhHHHHHHHHhHHHHhccchHHHHHHHHH
Confidence 888888762 21110011 1 123567888888877777665543 33 344456677777889999999999998
Q ss_pred HHHh
Q 037236 700 MQKL 703 (953)
Q Consensus 700 m~~~ 703 (953)
+..+
T Consensus 193 ia~D 196 (221)
T COG4649 193 IAND 196 (221)
T ss_pred HHcc
Confidence 8654
No 317
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=81.17 E-value=21 Score=34.25 Aligned_cols=59 Identities=12% Similarity=0.091 Sum_probs=28.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037236 642 WNAIIGGHGIHGYGKEAIELFEKMLALGHKPDT--FTFVGILMACNHAGLVENGLKYFSQM 700 (953)
Q Consensus 642 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~--~t~~~ll~a~~~~g~~~~a~~~~~~m 700 (953)
+..+..-|.+.|+.++|++.|.++.+....|.. ..+..++..+...|++..+..+..++
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 344444455555555555555555554333322 22344445555555555555554444
No 318
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.92 E-value=0.93 Score=46.80 Aligned_cols=87 Identities=14% Similarity=0.150 Sum_probs=58.1
Q ss_pred CCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHH
Q 037236 724 GKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQR 801 (953)
Q Consensus 724 g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 801 (953)
|.+++|++.+..... +|...++..-.+++.+.+....|++-+..+++++|+....|-.-+......|+|++|.+.+..
T Consensus 128 G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~ 207 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLAL 207 (377)
T ss_pred cchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHH
Confidence 334444444433322 223334444445556666677788888888888888888888888888888888888888777
Q ss_pred HHHCCCccC
Q 037236 802 MKERGLQKE 810 (953)
Q Consensus 802 m~~~~~~~~ 810 (953)
.-+.++...
T Consensus 208 a~kld~dE~ 216 (377)
T KOG1308|consen 208 ACKLDYDEA 216 (377)
T ss_pred HHhccccHH
Confidence 777666544
No 319
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=80.45 E-value=2.3e+02 Score=38.30 Aligned_cols=129 Identities=9% Similarity=0.027 Sum_probs=72.7
Q ss_pred HHHHHHHHHHhcCCcccHHHHhc-cCCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhcccc
Q 037236 408 VANAFVVAYAKCGSEISAENVFH-GMDSRTVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLK 486 (953)
Q Consensus 408 ~~~~li~~y~~~g~~~~A~~~f~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 486 (953)
.+-.+...|...+++|....+.. +...++ ...-|.-....|++..|...|+.+.+.+ ++...+++.++......+
T Consensus 1422 l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~ 1497 (2382)
T KOG0890|consen 1422 LYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQ 1497 (2382)
T ss_pred HHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhccc
Confidence 34444558888888887766665 233332 3334555667899999999999998753 233667777777666666
Q ss_pred ccchhhHHHHHHHHhCCCCchh-hHhhHHHHHHhcCChhHHHHHHHhcccCCcccHHHH
Q 037236 487 SLHRGKEIHGFVIRNGLEGDSF-TGISLLSLYMHCEKSSSARVLFDEMEDKSLVSWNTM 544 (953)
Q Consensus 487 ~~~~a~~i~~~~~~~g~~~~~~-~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~l 544 (953)
.++...-..+...... .+... .++.=+.+--+.++++....... .++..+|.+.
T Consensus 1498 ~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~n~e~w~~~ 1552 (2382)
T KOG0890|consen 1498 HLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS---DRNIEYWSVE 1552 (2382)
T ss_pred chhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh---cccccchhHH
Confidence 6655544333222211 11111 12222233345566666555544 4566666665
No 320
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=80.31 E-value=11 Score=36.20 Aligned_cols=92 Identities=17% Similarity=0.144 Sum_probs=61.5
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHhhhcCCC------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHH
Q 037236 609 FVACSIIDMYAKCGCLEQSRRVFDRLKDK------DVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPD---TFTFVG 679 (953)
Q Consensus 609 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~---~~t~~~ 679 (953)
..+..+.+.|.+.|+.+.|.+.|.++.+. -+..+-.+|......|++..+.....+....--.+. ...-..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 45667899999999999999999998853 234677888888899999999888887765322221 111111
Q ss_pred HHH--HHHhcCCHHHHHHHHHHH
Q 037236 680 ILM--ACNHAGLVENGLKYFSQM 700 (953)
Q Consensus 680 ll~--a~~~~g~~~~a~~~~~~m 700 (953)
+.. ++...+++.+|-+.|-..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHcc
Confidence 111 223456666666665444
No 321
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=79.75 E-value=2.4e+02 Score=38.12 Aligned_cols=61 Identities=13% Similarity=0.059 Sum_probs=52.9
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 742 AGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 742 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
..+|-.....+|..|.++.|..+.-++.+.. -+..++-.+......|+-..|..+.+.--+
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~ 1730 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILS 1730 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 5689999999999999999999988888777 478889999999999999999998776654
No 322
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=79.63 E-value=36 Score=33.25 Aligned_cols=124 Identities=17% Similarity=0.134 Sum_probs=78.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC----hhHHHH
Q 037236 641 SWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK----LEHYAC 715 (953)
Q Consensus 641 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~ 715 (953)
|.+..++.+.+.++..+|+.+.++-++. +| |.-+-..++..++-.|++++|..-++-.-+ +.|+ ...|..
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~---l~p~~t~~a~lyr~ 77 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT---LSPQDTVGASLYRH 77 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhh---cCcccchHHHHHHH
Confidence 3455677888899999999999887774 67 667777888899999999999988776643 4454 455555
Q ss_pred HHHHHhhcCCHHHHH-HHHHhC--CC--CCChhHHHHHHH-HHHh--cCChhHHHHHHHHHhccCCCCc
Q 037236 716 VVDMLGRAGKLDDAF-KLIIEM--PE--EADAGIWSSLLR-SCRT--YGALKMGEKVAKTLLELEPDKA 776 (953)
Q Consensus 716 lv~~l~~~g~~~eA~-~~~~~~--~~--~~~~~~~~~ll~-~~~~--~g~~~~a~~~~~~~~~l~p~~~ 776 (953)
+|.+ +.+. ++|..- |. -.+...|-..+. +..- .|.-+.....-+.+++--|...
T Consensus 78 lir~-------ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~i 139 (273)
T COG4455 78 LIRC-------EAARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPI 139 (273)
T ss_pred HHHH-------HHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCC
Confidence 5542 2222 233321 21 113445654444 3333 3345556667777777766544
No 323
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=79.31 E-value=1e+02 Score=33.63 Aligned_cols=58 Identities=17% Similarity=0.110 Sum_probs=45.9
Q ss_pred hhHHHHHHhcCChhHHHHHHHhcccC---CcccHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 037236 511 ISLLSLYMHCEKSSSARVLFDEMEDK---SLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIG 568 (953)
Q Consensus 511 ~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 568 (953)
..|+.-|.-.|++.+|.....++.-| ..+.+.+++.+.-+.|+-...+.++++....|
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 35677788899999999999988765 44678888888888888777777777777665
No 324
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=79.28 E-value=1.4e+02 Score=35.31 Aligned_cols=85 Identities=8% Similarity=0.037 Sum_probs=38.2
Q ss_pred HHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccchhhHHHHHHHHhCC-CCchhhHhhHHHHHHh---c
Q 037236 445 CGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGL-EGDSFTGISLLSLYMH---C 520 (953)
Q Consensus 445 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~-~~~~~~~~~li~~y~~---~ 520 (953)
..+.-.|+++.|++.+-+ ..+...|.+.+...+..+.-..-.+... ..+..... .+...-+..||..|.+ .
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 344567999999999887 3345567777777766654433222211 11111110 1111345566777765 3
Q ss_pred CChhHHHHHHHhcc
Q 037236 521 EKSSSARVLFDEME 534 (953)
Q Consensus 521 g~~~~A~~~f~~~~ 534 (953)
.+..+|...|--+.
T Consensus 341 td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 341 TDPREALQYLYLIC 354 (613)
T ss_dssp T-HHHHHHHHHGGG
T ss_pred cCHHHHHHHHHHHH
Confidence 45666666665554
No 325
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.63 E-value=68 Score=31.85 Aligned_cols=62 Identities=10% Similarity=0.111 Sum_probs=32.8
Q ss_pred HHHHHHhhc-CCHHHHHHHHHhCCC-----CCChhHHHHHHHH---HHhcCChhHHHHHHHHHhccCCCCc
Q 037236 715 CVVDMLGRA-GKLDDAFKLIIEMPE-----EADAGIWSSLLRS---CRTYGALKMGEKVAKTLLELEPDKA 776 (953)
Q Consensus 715 ~lv~~l~~~-g~~~eA~~~~~~~~~-----~~~~~~~~~ll~~---~~~~g~~~~a~~~~~~~~~l~p~~~ 776 (953)
.+.+.|-.- .+++.|+..++.... +.++..-..++.+ -...+++..|..+++++..-.-+|+
T Consensus 118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 344444433 455555555554421 2333334444443 2345677888888888776555544
No 326
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=78.15 E-value=74 Score=34.52 Aligned_cols=65 Identities=11% Similarity=0.235 Sum_probs=54.7
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCC----CcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 740 ADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPD----KAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 740 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~----~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
....+|..+...|+++|+++.|..++.++....+. .+...+.-+.+....|+..+|....+....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45668999999999999999999999999987532 566777789999999999999997666655
No 327
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=77.99 E-value=3 Score=25.20 Aligned_cols=24 Identities=4% Similarity=0.055 Sum_probs=19.5
Q ss_pred chHHHHHHHHHhcCCchHHHHHHH
Q 037236 777 ENYVLVSNIYAGSEKWDDVRMMRQ 800 (953)
Q Consensus 777 ~~~~~l~~~y~~~g~~~~a~~~~~ 800 (953)
.+...|+.+|...|++++|.++.+
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456788999999999999988653
No 328
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=77.24 E-value=13 Score=27.29 Aligned_cols=49 Identities=14% Similarity=0.205 Sum_probs=35.7
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHCCCccCCceeEEEeCCEEEEEeeCCCCCccHHHHHHHHHHHHHHHHhcC
Q 037236 779 YVLVSNIYAGSEKWDDVRMMRQRMKERGLQKEAGCSWIELGGNIHSFVVGDNMHPEWEEIRGMWGRLEEQISKIG 853 (953)
Q Consensus 779 ~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~~~~~~~~ 853 (953)
...++-.+.+.|++++|.+.-+.+-+ .+|...+.....+.+.++|.+.|
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~--------------------------~eP~N~Qa~~L~~~i~~~i~kdg 52 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLE--------------------------IEPDNRQAQSLKELIEDKIQKDG 52 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH--------------------------HTTS-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh--------------------------hCCCcHHHHHHHHHHHHHHhccC
Confidence 46788899999999999998877765 34556666666666677777776
No 329
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=76.92 E-value=30 Score=29.08 Aligned_cols=60 Identities=22% Similarity=0.298 Sum_probs=41.4
Q ss_pred HHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 037236 616 DMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFV 678 (953)
Q Consensus 616 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~ 678 (953)
..+...|++++|..+.+.+..||+..|-++-. .+.|..+++..-+.+|..+| .|...+|.
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 34556788888888888888888888876653 45666677777777777765 55555543
No 330
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.74 E-value=22 Score=36.64 Aligned_cols=97 Identities=12% Similarity=0.194 Sum_probs=72.4
Q ss_pred CCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC-CC--------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 037236 603 ILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK-DK--------DVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPD 673 (953)
Q Consensus 603 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~--------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~ 673 (953)
|......+...+++.-....+++++...+-++. .| ..++|-.++. .-++++++.++..=+.-|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhccccc
Confidence 444455566667777777788888888877776 22 2334433332 2367799999999899999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 037236 674 TFTFVGILMACNHAGLVENGLKYFSQMQKL 703 (953)
Q Consensus 674 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 703 (953)
..|+..+++.+.+.+++.+|.++...|+..
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999999999998887776543
No 331
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=76.64 E-value=4.4 Score=25.00 Aligned_cols=31 Identities=19% Similarity=0.222 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 037236 744 IWSSLLRSCRTYGALKMGEKVAKTLLELEPD 774 (953)
Q Consensus 744 ~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~ 774 (953)
.|..+...+...|+++.|...+++++++.|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 3444555555566666666666666665553
No 332
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=75.87 E-value=70 Score=33.72 Aligned_cols=126 Identities=13% Similarity=0.155 Sum_probs=68.9
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHHhcc--c----cchHHHHHHHHHHHHcCC---CCCccHHHHHHHHHHhcCCH-
Q 037236 555 VEAIVLFRRMFSIGVQPCEISIVSILSACSQ--L----SALRLGKETHCYALKAIL---TNDAFVACSIIDMYAKCGCL- 624 (953)
Q Consensus 555 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~--~----~~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~y~~~g~~- 624 (953)
++.+.+++.|.+.|.+-+..++.+.+..... . .....++.+++.|.+..+ .++...+.+|+.+ ..+++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3455666777777777776666553332222 1 234566777777777543 2334444444333 33333
Q ss_pred ---HHHHHHhhhcC-----CCCHHHHHHHHHHHHhc-CC--hHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037236 625 ---EQSRRVFDRLK-----DKDVTSWNAIIGGHGIH-GY--GKEAIELFEKMLALGHKPDTFTFVGILM 682 (953)
Q Consensus 625 ---~~A~~~~~~~~-----~~~~~~~~~li~~~~~~-g~--~~~A~~l~~~m~~~g~~P~~~t~~~ll~ 682 (953)
+.++..|+.+. +.|..-+.+-|-++... .. ..++.++++.+.+.|+++....|..+.-
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 34455555544 23333333333333322 22 4578999999999999886666554443
No 333
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=75.51 E-value=5.6 Score=43.43 Aligned_cols=87 Identities=13% Similarity=0.105 Sum_probs=64.6
Q ss_pred HHHhhcCCHHHHHHHHHhCCC-CCCh-hHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHH
Q 037236 718 DMLGRAGKLDDAFKLIIEMPE-EADA-GIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDV 795 (953)
Q Consensus 718 ~~l~~~g~~~eA~~~~~~~~~-~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a 795 (953)
+-+.+.+.++.|..++.++.. .|+- ..|..-..++.+.+++..|..-+.++++++|.....|+.-+.++.+.+++.+|
T Consensus 12 n~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A 91 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKA 91 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHH
Confidence 344556667777777765543 5643 34444446677888888899999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 037236 796 RMMRQRMKE 804 (953)
Q Consensus 796 ~~~~~~m~~ 804 (953)
...++..+.
T Consensus 92 ~~~l~~~~~ 100 (476)
T KOG0376|consen 92 LLDLEKVKK 100 (476)
T ss_pred HHHHHHhhh
Confidence 887765543
No 334
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=74.50 E-value=26 Score=31.39 Aligned_cols=71 Identities=11% Similarity=0.113 Sum_probs=36.6
Q ss_pred CCChhHHHHHHHHHhhcCCHH---HHHHHHHhCCC--CCC--hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcc
Q 037236 707 KPKLEHYACVVDMLGRAGKLD---DAFKLIIEMPE--EAD--AGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAE 777 (953)
Q Consensus 707 ~p~~~~~~~lv~~l~~~g~~~---eA~~~~~~~~~--~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~ 777 (953)
.++..+--.+..++.+..+.+ +.+.+++.... .|. -.-..-|.-+|.+.|+++.+.+..+.+++.+|+|..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 455555555666666655433 33444444431 221 112223344556666666666666666666665543
No 335
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=74.15 E-value=7.4 Score=26.40 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 037236 641 SWNAIIGGHGIHGYGKEAIELFEKMLA 667 (953)
Q Consensus 641 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 667 (953)
+++.+...|...|++++|+.++++..+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 455555555555666666655555443
No 336
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=74.14 E-value=14 Score=35.72 Aligned_cols=76 Identities=14% Similarity=0.199 Sum_probs=51.7
Q ss_pred HhhcCCHHHHHHHHHhCCCCC--ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCC----CcchHHHHHHHHHhcCCch
Q 037236 720 LGRAGKLDDAFKLIIEMPEEA--DAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPD----KAENYVLVSNIYAGSEKWD 793 (953)
Q Consensus 720 l~~~g~~~eA~~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~----~~~~~~~l~~~y~~~g~~~ 793 (953)
..|-|+ ++|++.|-.+...| +..-....+..+....|.+.+...+-+++++.+. |+..+..|+.+|.+.|+++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 344444 45666555554332 3344445555666677888999999999887433 6888889999999999988
Q ss_pred HHH
Q 037236 794 DVR 796 (953)
Q Consensus 794 ~a~ 796 (953)
.|-
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 773
No 337
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=73.76 E-value=5 Score=25.84 Aligned_cols=27 Identities=30% Similarity=0.247 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 037236 641 SWNAIIGGHGIHGYGKEAIELFEKMLA 667 (953)
Q Consensus 641 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 667 (953)
+|..+...|...|++++|++.|++.++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455556666666666666666666655
No 338
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.95 E-value=17 Score=40.79 Aligned_cols=99 Identities=18% Similarity=0.123 Sum_probs=67.3
Q ss_pred hccCChHHHHHHhccCCCCCeecHHHHHHHHHcCCCchHHHHHHHHhhhccCCCCCChhhHHHHHHhhhcCCCchHHHHH
Q 037236 211 GKCAFVEEMVKLFEVMPERNLVSWNSIICGSSENGFSCESFDLLIKMMGCEEGFIPDVATVVTVLPVCAGEGNVDLGILV 290 (953)
Q Consensus 211 ~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 290 (953)
.+.|+++.|.++..+.. +..-|..|..+..+.|++..|.++|.+. ..|..|+-.+...|+-+....+
T Consensus 648 l~lgrl~iA~~la~e~~--s~~Kw~~Lg~~al~~~~l~lA~EC~~~a-----------~d~~~LlLl~t~~g~~~~l~~l 714 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN--SEVKWRQLGDAALSAGELPLASECFLRA-----------RDLGSLLLLYTSSGNAEGLAVL 714 (794)
T ss_pred hhcCcHHHHHHHHHhhc--chHHHHHHHHHHhhcccchhHHHHHHhh-----------cchhhhhhhhhhcCChhHHHHH
Confidence 45688888888765543 5567999999999999999999999887 2356667667777776655555
Q ss_pred HHHHHHhCCCCCchHHHHHHHhhHhcCChhHHHHHHhc
Q 037236 291 HGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFDK 328 (953)
Q Consensus 291 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~ 328 (953)
-....+.|. .|.-..+|...|+++++.+++.+
T Consensus 715 a~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 715 ASLAKKQGK------NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHh
Confidence 555555552 12233455666777776666543
No 339
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=72.77 E-value=5.1 Score=27.25 Aligned_cols=28 Identities=11% Similarity=0.232 Sum_probs=21.1
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 777 ENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 777 ~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
.++..|+.+|...|++++|..+.++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3567888899999999999887766644
No 340
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.06 E-value=1.1e+02 Score=30.47 Aligned_cols=99 Identities=11% Similarity=0.181 Sum_probs=58.5
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHHHhcCCCCC-hhHHHHHH---HHHhhcCCHHHHHHHHHhCCC---CCChhHHH---HH
Q 037236 680 ILMACNHA-GLVENGLKYFSQMQKLHAVKPK-LEHYACVV---DMLGRAGKLDDAFKLIIEMPE---EADAGIWS---SL 748 (953)
Q Consensus 680 ll~a~~~~-g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv---~~l~~~g~~~eA~~~~~~~~~---~~~~~~~~---~l 748 (953)
+...|... .++++|+..|+..-+-+.-... ...--|++ +.-+..|++.+|+++|++... ..+..-|. -+
T Consensus 119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdyf 198 (288)
T KOG1586|consen 119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYF 198 (288)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHH
Confidence 34444433 5667777777766443322222 22233443 334567889999999887643 22222232 22
Q ss_pred H--HHHHhc-CChhHHHHHHHHHhccCCCCcch
Q 037236 749 L--RSCRTY-GALKMGEKVAKTLLELEPDKAEN 778 (953)
Q Consensus 749 l--~~~~~~-g~~~~a~~~~~~~~~l~p~~~~~ 778 (953)
+ +.|... .|.--+..++++..+++|.-..+
T Consensus 199 lkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 199 LKAGLCHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 2 236655 78888999999999999975443
No 341
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=71.51 E-value=96 Score=36.24 Aligned_cols=153 Identities=16% Similarity=0.092 Sum_probs=85.4
Q ss_pred HhcCChHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHhcCCCCChhHHHHHH
Q 037236 650 GIHGYGKEAIELFEKMLA-------LGHKPDTFTFVGILMACNHAG-----LVENGLKYFSQMQKLHAVKPKLEHYACVV 717 (953)
Q Consensus 650 ~~~g~~~~A~~l~~~m~~-------~g~~P~~~t~~~ll~a~~~~g-----~~~~a~~~~~~m~~~~~~~p~~~~~~~lv 717 (953)
....+.+.|+..|+.+.+ .| +......+..+|.+.. +.+.|..++....+ .| .|+....-...
T Consensus 260 g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~-~g-~~~a~~~lg~~ 334 (552)
T KOG1550|consen 260 GVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE-LG-NPDAQYLLGVL 334 (552)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHh-cC-CchHHHHHHHH
Confidence 344566666666666655 44 2234455555665543 44557777766633 22 23322222222
Q ss_pred HHHhh-cCCHHHHHHHHHhCCCC--CChhHHHHHHHHHH--hcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhc-CC
Q 037236 718 DMLGR-AGKLDDAFKLIIEMPEE--ADAGIWSSLLRSCR--TYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGS-EK 791 (953)
Q Consensus 718 ~~l~~-~g~~~eA~~~~~~~~~~--~~~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~-g~ 791 (953)
...+. -.+...|.++|...... +++..+-++.-.+. ...+.+.|...++++-+.+ ++.+...++.+|.-. ++
T Consensus 335 ~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~ 412 (552)
T KOG1550|consen 335 YETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGR 412 (552)
T ss_pred HHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHcccc
Confidence 22222 13466777777766543 33333333322222 2337888888888888877 455555666555443 88
Q ss_pred chHHHHHHHHHHHCCCcc
Q 037236 792 WDDVRMMRQRMKERGLQK 809 (953)
Q Consensus 792 ~~~a~~~~~~m~~~~~~~ 809 (953)
++.+...+..+++.|.+-
T Consensus 413 ~~~~~~~~~~~a~~g~~~ 430 (552)
T KOG1550|consen 413 YDTALALYLYLAELGYEV 430 (552)
T ss_pred ccHHHHHHHHHHHhhhhH
Confidence 888888888888777654
No 342
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=70.90 E-value=8.8 Score=30.62 Aligned_cols=48 Identities=8% Similarity=0.146 Sum_probs=32.3
Q ss_pred hcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHH
Q 037236 686 HAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLI 733 (953)
Q Consensus 686 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~ 733 (953)
++...++|+..|....+...-.|+ -.++.+|+.+|...|++++++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566667777777777665444444 456677777777777777777653
No 343
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=70.58 E-value=40 Score=33.54 Aligned_cols=52 Identities=12% Similarity=0.030 Sum_probs=44.0
Q ss_pred HhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 753 RTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 753 ~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
...|++-++++-...++..+|+|..+|+..+.+++..=+-++|.+-+++..+
T Consensus 241 L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 241 LKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred hhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 4567888888888899999999999999999999988888888876666655
No 344
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=69.58 E-value=2.6e+02 Score=33.76 Aligned_cols=262 Identities=15% Similarity=0.078 Sum_probs=0.0
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHh----ccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhc
Q 037236 546 AGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSAC----SQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKC 621 (953)
Q Consensus 546 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 621 (953)
..+..+|.+.+|++.--... |......++.-+ -..+.+..-......+-..-+..++...-.-+......
T Consensus 355 ~w~~~~g~~~eAI~hAlaA~------d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~ 428 (894)
T COG2909 355 EWFAEHGLPSEAIDHALAAG------DPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWLLASQ 428 (894)
T ss_pred HHHHhCCChHHHHHHHHhCC------CHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHHHc
Q ss_pred CCHHHHHHHhhhcC----CCCHH-------HHHHHHHHHHh-cCChHHHHHHHHHHHHCCCCC------CHHHHHHHHHH
Q 037236 622 GCLEQSRRVFDRLK----DKDVT-------SWNAIIGGHGI-HGYGKEAIELFEKMLALGHKP------DTFTFVGILMA 683 (953)
Q Consensus 622 g~~~~A~~~~~~~~----~~~~~-------~~~~li~~~~~-~g~~~~A~~l~~~m~~~g~~P------~~~t~~~ll~a 683 (953)
.++++|..+..+.. .++.. .|+++-.-... .|++++|+++.+.... .-| ..+.+..+..+
T Consensus 429 ~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~--~L~~~~~~~r~~~~sv~~~a 506 (894)
T COG2909 429 HRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALV--QLPEAAYRSRIVALSVLGEA 506 (894)
T ss_pred cChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hcccccchhhhhhhhhhhHH
Q ss_pred HHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHH-----HhhcC--CHHHHHHHHHhCCC------CCChhHHHHHHH
Q 037236 684 CNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDM-----LGRAG--KLDDAFKLIIEMPE------EADAGIWSSLLR 750 (953)
Q Consensus 684 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~-----l~~~g--~~~eA~~~~~~~~~------~~~~~~~~~ll~ 750 (953)
..-.|++++|..+..+. +...-.-+..++..++.. +...| .+.+.+..++.... .-........+.
T Consensus 507 ~~~~G~~~~Al~~~~~a-~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 507 AHIRGELTQALALMQQA-EQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHhchHHHHHHHHHHH-HHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Q ss_pred HHHhcCChhHHHHHHHHHhcc------CCCCcchHH-HHHHHHHhcCCchHHHHHHHHHHHCCCccCCceeEE
Q 037236 751 SCRTYGALKMGEKVAKTLLEL------EPDKAENYV-LVSNIYAGSEKWDDVRMMRQRMKERGLQKEAGCSWI 816 (953)
Q Consensus 751 ~~~~~g~~~~a~~~~~~~~~l------~p~~~~~~~-~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i 816 (953)
.++.+-+++.++..+.+.+++ .|-++-.-. .|+.++...|+.++|......+........|..-|+
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~ 658 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYL 658 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHH
No 345
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=68.79 E-value=30 Score=37.68 Aligned_cols=119 Identities=17% Similarity=0.219 Sum_probs=73.7
Q ss_pred cCChHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHH
Q 037236 652 HGYGKEA-IELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAF 730 (953)
Q Consensus 652 ~g~~~~A-~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~ 730 (953)
.|+...| .++|.-+....-.|+.+.+.+.+ .++.|.++.+...+....+ -+-....+..|++..+-+.|++++|.
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHHH
Confidence 4554444 34444455544456655554443 5677888888777766633 23334566777777778888888888
Q ss_pred HHHHhCCCC--CChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 037236 731 KLIIEMPEE--ADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPD 774 (953)
Q Consensus 731 ~~~~~~~~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~ 774 (953)
.+-+.|... .++.+...-.......|-++++....++++.++|.
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 877776531 34444444444456667777888888888877764
No 346
>PRK11619 lytic murein transglycosylase; Provisional
Probab=68.72 E-value=2.6e+02 Score=33.37 Aligned_cols=166 Identities=10% Similarity=-0.046 Sum_probs=89.3
Q ss_pred HHHhcCCCHHHHHHHHHHhhcCCCCh-hHHHHHHHHhccCCChhHHHHHHHHHhhhcCCCCCchhhhHHHHHHHhcCChh
Q 037236 37 TLCEESKSLNKALSLLQENLHNADLK-EATGVLLQACGHEKDIEIGKRVHELISASTQFSNDFIINTRLITMYSLCGFPL 115 (953)
Q Consensus 37 ~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~ 115 (953)
...+.| +...+.++...+...+..+ -.|..|...+. ...+++ +-..+.+-.+.+....+-..-+..+.+.+++.
T Consensus 42 ~a~~~g-~~~~~~~~~~~l~d~pL~~yl~y~~L~~~l~-~~~~~e---v~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~ 116 (644)
T PRK11619 42 QAWDNR-QMDVVEQLMPTLKDYPLYPYLEYRQLTQDLM-NQPAVQ---VTNFIRANPTLPPARSLQSRFVNELARREDWR 116 (644)
T ss_pred HHHHCC-CHHHHHHHHHhccCCCcHhHHHHHHHHhccc-cCCHHH---HHHHHHHCCCCchHHHHHHHHHHHHHHccCHH
Confidence 345566 6777766666554222211 12222222221 223443 33333311233344445555566677888999
Q ss_pred hHHHHhhcCCCCCchhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcccHHHHHHHhhcCCChhhHhHHHHHHHHhC
Q 037236 116 DSRRVFDSLKTRNLFQWNALVSGFTKNELYPDVLSIFVELLSDTELKPDNFTFPCVIKACGGIADVSFGSGVHGMAAKMG 195 (953)
Q Consensus 116 ~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 195 (953)
...+ |..-+..+.........+....|+.++|......+.. .|.. .+..+.. ++....+.|
T Consensus 117 ~~~~-~~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~-~g~~-~p~~cd~----------------l~~~~~~~g 177 (644)
T PRK11619 117 GLLA-FSPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWL-TGKS-LPNACDK----------------LFSVWQQSG 177 (644)
T ss_pred HHHH-hcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-cCCC-CChHHHH----------------HHHHHHHcC
Confidence 8888 4432233444556677788888998888888777766 3322 2233444 444444444
Q ss_pred CCCChhHHHHHHHHhhccCChHHHHHHhccCC
Q 037236 196 LIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP 227 (953)
Q Consensus 196 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~ 227 (953)
.-.+..++.. +......|+...|..+...++
T Consensus 178 ~lt~~d~w~R-~~~al~~~~~~lA~~l~~~l~ 208 (644)
T PRK11619 178 KQDPLAYLER-IRLAMKAGNTGLVTYLAKQLP 208 (644)
T ss_pred CCCHHHHHHH-HHHHHHCCCHHHHHHHHHhcC
Confidence 4334444444 344456688888888877774
No 347
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=68.45 E-value=1.5e+02 Score=30.60 Aligned_cols=57 Identities=14% Similarity=0.046 Sum_probs=50.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 748 LLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 748 ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
....|...|.+.+|....++++.++|-+...+..|.++|+..|+--+|.+-++.+.+
T Consensus 285 va~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 344678899999999999999999999999999999999999998888877666643
No 348
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=68.40 E-value=87 Score=32.38 Aligned_cols=53 Identities=11% Similarity=0.064 Sum_probs=29.0
Q ss_pred CchhHHHHHHHHHHhcCCcccHHHHhccC-----CCCChhhHHHHHHHHHhcCChHHH
Q 037236 404 NDELVANAFVVAYAKCGSEISAENVFHGM-----DSRTVSSWNALICGYAQNGDHLKA 456 (953)
Q Consensus 404 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~-----~~~~~~~~~~li~~~~~~g~~~~A 456 (953)
++..+....+..+++.+++..-.++++.. +..|...|..+|....+.|+..-.
T Consensus 200 l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~ 257 (292)
T PF13929_consen 200 LTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVM 257 (292)
T ss_pred CChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHH
Confidence 34444444455555555555555444432 233666777777777777775433
No 349
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=67.73 E-value=41 Score=32.65 Aligned_cols=78 Identities=10% Similarity=0.075 Sum_probs=44.8
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC--CCChhHHHHHHHHHhhcCCHHH
Q 037236 651 IHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAV--KPKLEHYACVVDMLGRAGKLDD 728 (953)
Q Consensus 651 ~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p~~~~~~~lv~~l~~~g~~~e 728 (953)
+.|+ ++|.+.|-++...+.--+......|.. |....+.++++.++.++.+.+.- .++++.+.+|+..+.+.|+++.
T Consensus 119 r~~d-~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 119 RFGD-QEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred ccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 3343 566777766666543334333434433 33456777777777766654322 3456666677777777776666
Q ss_pred HH
Q 037236 729 AF 730 (953)
Q Consensus 729 A~ 730 (953)
|.
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 54
No 350
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=67.63 E-value=5.2 Score=25.43 Aligned_cols=27 Identities=15% Similarity=0.171 Sum_probs=23.0
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 778 NYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 778 ~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
++..++.+|...|++++|.+.++.+.+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 467789999999999999998888765
No 351
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.07 E-value=3e+02 Score=33.64 Aligned_cols=179 Identities=17% Similarity=0.144 Sum_probs=86.5
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHH
Q 037236 540 SWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYA 619 (953)
Q Consensus 540 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 619 (953)
-|..|+.-|...|+.++|+++|.+....--.-|... .+.-..+.+++.+.+-+.. .|+-.|.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~-------------~~~~e~ii~YL~~l~~~~~-----~Li~~y~ 567 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQ-------------LDGLEKIIEYLKKLGAENL-----DLILEYA 567 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccch-------------hhhHHHHHHHHHHhcccch-----hHHHHHh
Confidence 478899999999999999999998876320011100 1111123333333332211 1111111
Q ss_pred ---hcCCHHHHHHHhhhcCCCCHHHHH-HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------
Q 037236 620 ---KCGCLEQSRRVFDRLKDKDVTSWN-AIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHA-------- 687 (953)
Q Consensus 620 ---~~g~~~~A~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~-------- 687 (953)
-..+.+...++|..-......+.+ .-+-.|......+-++.+++.+....-.++..-.+.++.-|...
T Consensus 568 ~wvl~~~p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~ 647 (877)
T KOG2063|consen 568 DWVLNKNPEAGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTD 647 (877)
T ss_pred hhhhccCchhheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCch
Confidence 133445555555541100001100 12233556667777788888877765555655555555555421
Q ss_pred CCHHHHHHH--HH---HHHH-hcCCCCC--------hhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 037236 688 GLVENGLKY--FS---QMQK-LHAVKPK--------LEHYACVVDMLGRAGKLDDAFKLIIEM 736 (953)
Q Consensus 688 g~~~~a~~~--~~---~m~~-~~~~~p~--------~~~~~~lv~~l~~~g~~~eA~~~~~~~ 736 (953)
++-+++.+. .+ .+.+ .....|. ...|--..-.++|.|+.++|+.++-..
T Consensus 648 ~kg~e~~E~~~rekl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~ 710 (877)
T KOG2063|consen 648 GKGEEAPETTVREKLLDFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHE 710 (877)
T ss_pred hccccchhhhHHHHHHHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 111122222 11 1111 1112222 233444444567899999999887553
No 352
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=67.07 E-value=7.8 Score=24.59 Aligned_cols=28 Identities=21% Similarity=0.267 Sum_probs=20.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhccCCC
Q 037236 747 SLLRSCRTYGALKMGEKVAKTLLELEPD 774 (953)
Q Consensus 747 ~ll~~~~~~g~~~~a~~~~~~~~~l~p~ 774 (953)
.+..++...|+.+.|...++++++..|+
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3455566677888888888888877775
No 353
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.46 E-value=35 Score=35.23 Aligned_cols=102 Identities=13% Similarity=0.067 Sum_probs=67.8
Q ss_pred cCCCCCchhhhHHHHHHHhcCChhhHHHHhhcCCC-CCc-----hhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCc
Q 037236 92 TQFSNDFIINTRLITMYSLCGFPLDSRRVFDSLKT-RNL-----FQWNALVSGFTKNELYPDVLSIFVELLSDTELKPDN 165 (953)
Q Consensus 92 ~~~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-~~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~ 165 (953)
.|.+.+..+-..++..-.....++++...+-+++. |+. .+-.+.++.+. .-++++++.++..-.+ .|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIq-YGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQ-YGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcch-hccccch
Confidence 34444555555566555666778888888777753 221 11122333333 3467788888888777 8888888
Q ss_pred ccHHHHHHHhhcCCChhhHhHHHHHHHHhC
Q 037236 166 FTFPCVIKACGGIADVSFGSGVHGMAAKMG 195 (953)
Q Consensus 166 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 195 (953)
+++..++..+.+.++...|.++.-.|..+.
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 888888888888888888888777776655
No 354
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=66.45 E-value=1.7e+02 Score=30.53 Aligned_cols=24 Identities=38% Similarity=0.374 Sum_probs=15.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 037236 642 WNAIIGGHGIHGYGKEAIELFEKML 666 (953)
Q Consensus 642 ~~~li~~~~~~g~~~~A~~l~~~m~ 666 (953)
|+. +..+-+.+++++|.+.|+-..
T Consensus 250 W~~-~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 250 WNK-GKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHH-HHHHHhhcCHHHHHHHHHHHH
Confidence 444 334556778888888887443
No 355
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=65.83 E-value=16 Score=36.10 Aligned_cols=81 Identities=14% Similarity=0.140 Sum_probs=58.9
Q ss_pred CCHHHHHHHHHhCC-CCCCh-hHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHH
Q 037236 724 GKLDDAFKLIIEMP-EEADA-GIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQR 801 (953)
Q Consensus 724 g~~~eA~~~~~~~~-~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 801 (953)
.++++|..-+.+.. ..|.+ .-|..-+-.+.+..+++.++.-..+++++.|+.......|+........+++|+....+
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqr 103 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQR 103 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 34555555443332 35655 34444444456677888999999999999999999999999999999999999998776
Q ss_pred HHH
Q 037236 802 MKE 804 (953)
Q Consensus 802 m~~ 804 (953)
..+
T Consensus 104 a~s 106 (284)
T KOG4642|consen 104 AYS 106 (284)
T ss_pred HHH
Confidence 644
No 356
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=65.46 E-value=27 Score=29.22 Aligned_cols=58 Identities=14% Similarity=0.268 Sum_probs=41.2
Q ss_pred hHHHHHHHhHhcCCCCCCcccHHHHHHHhhcCCChhhHhHHHHHHH-HhCCCCChhHHHHHH
Q 037236 147 DVLSIFVELLSDTELKPDNFTFPCVIKACGGIADVSFGSGVHGMAA-KMGLIGDVFVSNALI 207 (953)
Q Consensus 147 ~a~~~~~~m~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~g~~~~~~~~~~li 207 (953)
++.+-++.+.. ..+.|++....+.|++|.+.+|+..|.++++.+. +.|. +...|..++
T Consensus 25 e~rr~mN~l~~-~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFG-YDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhc-cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHH
Confidence 45555666666 6788888888888888888888888888888766 4332 333555544
No 357
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=64.49 E-value=55 Score=34.24 Aligned_cols=89 Identities=12% Similarity=0.147 Sum_probs=70.5
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCCC----CC--ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHH
Q 037236 712 HYACVVDMLGRAGKLDDAFKLIIEMPE----EA--DAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNI 785 (953)
Q Consensus 712 ~~~~lv~~l~~~g~~~eA~~~~~~~~~----~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 785 (953)
+|--=.+-|.+.+++..|.+.|.+... .| +++.|++-..+-.-.||+..+..-..+++.++|.+..+|+.=+..
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 343344667888899999999876543 23 356677777666778999999999999999999999999999999
Q ss_pred HHhcCCchHHHHHHH
Q 037236 786 YAGSEKWDDVRMMRQ 800 (953)
Q Consensus 786 y~~~g~~~~a~~~~~ 800 (953)
+....++++|...-+
T Consensus 163 ~~eLe~~~~a~nw~e 177 (390)
T KOG0551|consen 163 LLELERFAEAVNWCE 177 (390)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999888776544
No 358
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=64.24 E-value=12 Score=22.63 Aligned_cols=21 Identities=24% Similarity=0.268 Sum_probs=11.7
Q ss_pred HHHHHHHhhcCCHHHHHHHHH
Q 037236 714 ACVVDMLGRAGKLDDAFKLII 734 (953)
Q Consensus 714 ~~lv~~l~~~g~~~eA~~~~~ 734 (953)
..+...+...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 344555666666666665543
No 359
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=63.23 E-value=53 Score=27.68 Aligned_cols=55 Identities=11% Similarity=0.024 Sum_probs=41.4
Q ss_pred hHHHHHHHHhhccCChHHHHHHhccCCCCCeecHHHHHHHHHcCCCchHHHHHHHHh
Q 037236 201 FVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGSSENGFSCESFDLLIKM 257 (953)
Q Consensus 201 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 257 (953)
.+--.-++.+.+.|++++|..+.+.++-||...|-++-.+ +.|..+.+..-+.+|
T Consensus 40 ~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rl 94 (115)
T TIGR02508 40 AVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRL 94 (115)
T ss_pred HHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHH
Confidence 3333445567789999999999999999999999887654 566666666666666
No 360
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=62.95 E-value=2.8e+02 Score=31.79 Aligned_cols=130 Identities=9% Similarity=0.023 Sum_probs=80.1
Q ss_pred CCeecHHHHHHHHHcCCCchHHHHHHHHhhhccCCCCCChhhHH-HHHHhhhcCCCchHHHHHHHHHHHhCCCCCchHHH
Q 037236 229 RNLVSWNSIICGSSENGFSCESFDLLIKMMGCEEGFIPDVATVV-TVLPVCAGEGNVDLGILVHGLAVKLGLTRELMVNN 307 (953)
Q Consensus 229 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~-~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 307 (953)
-+-..|+.+|..--.....+.+...+..+ .+-.|..+-|- ..-.-=.+.|..+.+..+|+..+.. ++..+..|.
T Consensus 43 ~~f~~wt~li~~~~~~~~~~~~r~~y~~f----L~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~ 117 (577)
T KOG1258|consen 43 LDFDAWTTLIQENDSIEDVDALREVYDIF----LSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWL 117 (577)
T ss_pred hcccchHHHHhccCchhHHHHHHHHHHHH----HhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHH
Confidence 35667888876554444555556666666 12234333221 2222223667777778888777653 455666666
Q ss_pred HHHHhhH-hcCChhHHHHHHhcCCC------CCcccHHHHHHHHHcCCChhHHHHHHHHHHhc
Q 037236 308 ALVDMYA-KCGFLSEAQILFDKNNN------KNVVSWNTIIGAFSMAGDVCGTFDLLRKMQMK 363 (953)
Q Consensus 308 ~li~~~~-~~g~~~~A~~~f~~~~~------~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 363 (953)
.....+. ..|+.+..++.|++... ....-|-..|.--..++++.....++++.++.
T Consensus 118 ~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 118 SYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 6555543 45677777777775432 34556888888778888888888888888753
No 361
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.89 E-value=69 Score=36.33 Aligned_cols=106 Identities=18% Similarity=0.281 Sum_probs=61.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcC
Q 037236 677 FVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSCRTYG 756 (953)
Q Consensus 677 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~~~g 756 (953)
...++.-+..+|..++|+++ .||..+- .++..+.|+++.|.++..+ ..+..-|..|..+....|
T Consensus 617 rt~va~Fle~~g~~e~AL~~----------s~D~d~r---Felal~lgrl~iA~~la~e---~~s~~Kw~~Lg~~al~~~ 680 (794)
T KOG0276|consen 617 RTKVAHFLESQGMKEQALEL----------STDPDQR---FELALKLGRLDIAFDLAVE---ANSEVKWRQLGDAALSAG 680 (794)
T ss_pred hhhHHhHhhhccchHhhhhc----------CCChhhh---hhhhhhcCcHHHHHHHHHh---hcchHHHHHHHHHHhhcc
Confidence 34455556666766666553 3333321 2445667778887777665 345667888888777788
Q ss_pred ChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCC
Q 037236 757 ALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKERG 806 (953)
Q Consensus 757 ~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 806 (953)
++.+|.+++.++..+. .|.-+|...|+-+-...+-+..++.|
T Consensus 681 ~l~lA~EC~~~a~d~~--------~LlLl~t~~g~~~~l~~la~~~~~~g 722 (794)
T KOG0276|consen 681 ELPLASECFLRARDLG--------SLLLLYTSSGNAEGLAVLASLAKKQG 722 (794)
T ss_pred cchhHHHHHHhhcchh--------hhhhhhhhcCChhHHHHHHHHHHhhc
Confidence 8888888777765432 23334445555444444444444433
No 362
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=61.64 E-value=1.1e+02 Score=33.33 Aligned_cols=97 Identities=9% Similarity=0.064 Sum_probs=62.4
Q ss_pred CHHHHHHH---HHHHHhcCCHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHH-hhcCCHHHHHHHHHhCCC--CCC---
Q 037236 673 DTFTFVGI---LMACNHAGLVENGLKYFSQMQKLHAVKPK--LEHYACVVDML-GRAGKLDDAFKLIIEMPE--EAD--- 741 (953)
Q Consensus 673 ~~~t~~~l---l~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~lv~~l-~~~g~~~eA~~~~~~~~~--~~~--- 741 (953)
|..-|.++ +..+.+.|-+..|.++.+-+.. +.|+ +-..-.+||.| .|+++++--+++++.... ..+
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLls---Ldp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~ 175 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLS---LDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLS 175 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh---cCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhh
Confidence 44444443 4577889999999999888765 6666 44444557776 477888877777776443 111
Q ss_pred ---hhHHHHHHHHHHhcCCh---------------hHHHHHHHHHhccCC
Q 037236 742 ---AGIWSSLLRSCRTYGAL---------------KMGEKVAKTLLELEP 773 (953)
Q Consensus 742 ---~~~~~~ll~~~~~~g~~---------------~~a~~~~~~~~~l~p 773 (953)
...++.-+. +...++. +.|..++++++...|
T Consensus 176 ~lPn~a~S~aLA-~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 176 LLPNFAFSIALA-YFRLEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred hCccHHHHHHHH-HHHhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 123333333 3334444 889999999998887
No 363
>PRK10941 hypothetical protein; Provisional
Probab=60.87 E-value=40 Score=34.87 Aligned_cols=66 Identities=8% Similarity=-0.035 Sum_probs=46.3
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHH
Q 037236 715 CVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYV 780 (953)
Q Consensus 715 ~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~ 780 (953)
.+-..|.+.++++.|+...+.+.. +.++.-|.--+-.+...|....|..-++..++..|+++.+-.
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 344556667777777777666643 345666777777788888888888888888888888876543
No 364
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=60.59 E-value=25 Score=39.31 Aligned_cols=70 Identities=17% Similarity=0.111 Sum_probs=45.4
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHH
Q 037236 716 VVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNI 785 (953)
Q Consensus 716 lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 785 (953)
|..++.+.|...+|-.++.+... ...+.+..++++++....|++.|.+.++.+++++|+++..-..|-.+
T Consensus 648 la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 648 LANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 44445555555555555433221 23345666777778888888889999999999999888776655444
No 365
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=60.03 E-value=75 Score=26.99 Aligned_cols=60 Identities=13% Similarity=0.222 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 037236 657 EAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVD 718 (953)
Q Consensus 657 ~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~ 718 (953)
+..+-++.+....+-|++....+.+.||.+.+++.-|.++|+.+..+-+ +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 4455566666667889999999999999999999999999998865443 33346766654
No 366
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=59.72 E-value=74 Score=26.72 Aligned_cols=63 Identities=13% Similarity=0.213 Sum_probs=45.2
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 037236 654 YGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVD 718 (953)
Q Consensus 654 ~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~ 718 (953)
+.-++.+-++.+....+-|++....+.+.||.+.+++.-|.++|+....+-+ .+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 3445566666777777889999999999999999999999999988753333 23445655543
No 367
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=59.60 E-value=15 Score=30.56 Aligned_cols=42 Identities=7% Similarity=0.125 Sum_probs=31.2
Q ss_pred HHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 037236 762 EKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMK 803 (953)
Q Consensus 762 ~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 803 (953)
...+++.++.+|+|......++..|...|++++|.+..-.+-
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v 49 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELV 49 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 456677777888888888888899999999998888554443
No 368
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=59.58 E-value=1.1e+02 Score=33.63 Aligned_cols=122 Identities=14% Similarity=0.033 Sum_probs=60.3
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHH--hcCCHHHHHHHHHHHHHhcCC-CCChhHHHHHHHHHhhc
Q 037236 649 HGIHGYGKEAIELFEKMLALGHKPDTF--TFVGILMACN--HAGLVENGLKYFSQMQKLHAV-KPKLEHYACVVDMLGRA 723 (953)
Q Consensus 649 ~~~~g~~~~A~~l~~~m~~~g~~P~~~--t~~~ll~a~~--~~g~~~~a~~~~~~m~~~~~~-~p~~~~~~~lv~~l~~~ 723 (953)
+...+++..|.++|+++... +.++.. .+..+..+|. ..-++++|.+.++........ .-...++..++...-..
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~ 219 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLKELVEVLKAL 219 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHH
Confidence 34667888888888888876 444443 3334444444 455677888888776542111 01122333333333222
Q ss_pred CCHHHHHHHHHhCCCCCC-hhHHHHHHHHHH--hcCChhHHHHHHHHHhcc
Q 037236 724 GKLDDAFKLIIEMPEEAD-AGIWSSLLRSCR--TYGALKMGEKVAKTLLEL 771 (953)
Q Consensus 724 g~~~eA~~~~~~~~~~~~-~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~l 771 (953)
..+..+.+....-...+. ..+..-+.++-+ ..|+++.|..-+=+++|+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl 270 (379)
T PF09670_consen 220 ESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALEL 270 (379)
T ss_pred HhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 222222222221111111 233444444544 257777777666666653
No 369
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=58.32 E-value=1e+02 Score=31.60 Aligned_cols=90 Identities=12% Similarity=0.065 Sum_probs=55.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhh---
Q 037236 646 IGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGR--- 722 (953)
Q Consensus 646 i~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~--- 722 (953)
|.+++..|++.+++...-+--+.--+--....-.-|-.|++.|.+....+.-....+..+- -+...|..++.+|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~N-q~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSN-QSLPEYGTVAELYLLHVL 168 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCccc-CCchhhHHHHHHHHHHHH
Confidence 5677777888777665544333111112233344455678888888888877777653221 223447777776654
Q ss_pred --cCCHHHHHHHHHhC
Q 037236 723 --AGKLDDAFKLIIEM 736 (953)
Q Consensus 723 --~g~~~eA~~~~~~~ 736 (953)
.|+++||++++..-
T Consensus 169 lPLG~~~eAeelv~gs 184 (309)
T PF07163_consen 169 LPLGHFSEAEELVVGS 184 (309)
T ss_pred hccccHHHHHHHHhcC
Confidence 79999999988543
No 370
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=57.95 E-value=2.9e+02 Score=30.35 Aligned_cols=72 Identities=15% Similarity=0.179 Sum_probs=53.6
Q ss_pred HHHHHHHHHhcCCcccHHHHhccCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhcc
Q 037236 409 ANAFVVAYAKCGSEISAENVFHGMDSR---TVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTH 484 (953)
Q Consensus 409 ~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 484 (953)
...|+.-|...|++.+|.+..+++.-| ..+.+.+++.+.-+.|+-...+.+++..-..|+ .|.+.+-+++.+
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl----IT~nQMtkGf~R 586 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL----ITTNQMTKGFER 586 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc----eeHHHhhhhhhh
Confidence 345777788889999999999887655 456788899999999888888888887766553 455555555544
No 371
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=57.13 E-value=1.6e+02 Score=27.09 Aligned_cols=80 Identities=10% Similarity=0.017 Sum_probs=55.3
Q ss_pred HHHHHHHhhccCChHHHHHHhccCC---------CCCeecHHHHHHHHHcCCC-chHHHHHHHHhhhccCCCCCChhhHH
Q 037236 203 SNALIAMYGKCAFVEEMVKLFEVMP---------ERNLVSWNSIICGSSENGF-SCESFDLLIKMMGCEEGFIPDVATVV 272 (953)
Q Consensus 203 ~~~li~~~~~~g~~~~A~~~f~~m~---------~~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~~~g~~p~~~t~~ 272 (953)
.|.++.-.+..+++.....+++.+. ..+..+|+.++.+.++... ---+..+|.-| ++.+.+++...|.
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~L--k~~~~~~t~~dy~ 119 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFL--KKNDIEFTPSDYS 119 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHH--HHcCCCCCHHHHH
Confidence 4555555555555555555555443 2456678999998876665 44578889999 6678899999999
Q ss_pred HHHHhhhcCCCc
Q 037236 273 TVLPVCAGEGNV 284 (953)
Q Consensus 273 ~ll~~~~~~~~~ 284 (953)
.++++|.+....
T Consensus 120 ~li~~~l~g~~~ 131 (145)
T PF13762_consen 120 CLIKAALRGYFH 131 (145)
T ss_pred HHHHHHHcCCCC
Confidence 999998776433
No 372
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=56.84 E-value=3.3e+02 Score=30.62 Aligned_cols=163 Identities=13% Similarity=0.059 Sum_probs=70.3
Q ss_pred CChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHH
Q 037236 571 PCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIG 647 (953)
Q Consensus 571 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~ 647 (953)
.|...+.+++..+++.-.......+-..+...|- +...+-.++..|... ..+.-..+++++. -.|++.-..|..
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~ 140 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELAD 140 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHH
Confidence 3445555555555555444444444444444332 333444455555444 3333444444332 223333333333
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhc
Q 037236 648 GHGIHGYGKEAIELFEKMLALGHKP--DTFTFVGILMACNH--AGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRA 723 (953)
Q Consensus 648 ~~~~~g~~~~A~~l~~~m~~~g~~P--~~~t~~~ll~a~~~--~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~ 723 (953)
-|-+ ++.+.+..+|.++... +-| ......-+-.-+-+ ..+.|....+...+.++.|..--...+.-+-+-|...
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yr-fI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~ 218 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYR-FIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSEN 218 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHH-hcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccc
Confidence 3333 5555555555555543 222 00111111111111 3344455555555544444433333444444455555
Q ss_pred CCHHHHHHHHHhCCC
Q 037236 724 GKLDDAFKLIIEMPE 738 (953)
Q Consensus 724 g~~~eA~~~~~~~~~ 738 (953)
.+++||++++..+..
T Consensus 219 eN~~eai~Ilk~il~ 233 (711)
T COG1747 219 ENWTEAIRILKHILE 233 (711)
T ss_pred cCHHHHHHHHHHHhh
Confidence 566666666655543
No 373
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=56.59 E-value=67 Score=28.89 Aligned_cols=69 Identities=13% Similarity=0.147 Sum_probs=50.0
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCC
Q 037236 671 KPDTFTFVGILMACNHAGL---VENGLKYFSQMQKLHAVKPK--LEHYACVVDMLGRAGKLDDAFKLIIEMPE-EAD 741 (953)
Q Consensus 671 ~P~~~t~~~ll~a~~~~g~---~~~a~~~~~~m~~~~~~~p~--~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~~ 741 (953)
.|...+-..+..++.++.+ +.+++.+++...+ .-.|+ .+....|.-.+.|.|++++++.+++.... +||
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~--~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~ 103 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLK--SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPN 103 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhh--hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCC
Confidence 6777777788888887765 5678889998875 12333 44444566788999999999999887653 443
No 374
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=55.49 E-value=51 Score=27.93 Aligned_cols=43 Identities=19% Similarity=0.318 Sum_probs=29.9
Q ss_pred CCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHH
Q 037236 738 EEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYV 780 (953)
Q Consensus 738 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~ 780 (953)
.-|++.+..+-+.+|++.+|+..|.+.++-+-..-.+....|-
T Consensus 41 lVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~ 83 (108)
T PF02284_consen 41 LVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYP 83 (108)
T ss_dssp B---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHH
T ss_pred cCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHH
Confidence 3688999999999999999999999999887765444433443
No 375
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=55.33 E-value=1.1e+02 Score=26.35 Aligned_cols=52 Identities=12% Similarity=0.119 Sum_probs=26.3
Q ss_pred HHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 037236 616 DMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALG 669 (953)
Q Consensus 616 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 669 (953)
..+.+.|++++|...=.....||...|-++- -.+.|-.+++...+.++..+|
T Consensus 48 ~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~--a~klGL~~~~e~~l~rla~~g 99 (116)
T PF09477_consen 48 SSLMNRGDYQEALLLPQCHCYPDLEPWAALC--AWKLGLASALESRLTRLASSG 99 (116)
T ss_dssp HHHHHTT-HHHHHHHHTTS--GGGHHHHHHH--HHHCT-HHHHHHHHHHHCT-S
T ss_pred HHHHhhHHHHHHHHhcccCCCccHHHHHHHH--HHhhccHHHHHHHHHHHHhCC
Confidence 3445566676664444444456666665543 245566666666666555543
No 376
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.18 E-value=3.4e+02 Score=30.29 Aligned_cols=207 Identities=16% Similarity=0.094 Sum_probs=0.0
Q ss_pred HHHHHHhhhcCCCC----------HHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCC--------HHHHHHHHHHHH
Q 037236 625 EQSRRVFDRLKDKD----------VTSWNAIIGGHGIHGYGKEAIELFEKMLAL-GHKPD--------TFTFVGILMACN 685 (953)
Q Consensus 625 ~~A~~~~~~~~~~~----------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~P~--------~~t~~~ll~a~~ 685 (953)
|+|+...++.++.| ..+...++.+-.-.|++.+|++-...|.+- .-.|. ......+.--|.
T Consensus 299 De~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~ 378 (629)
T KOG2300|consen 299 DEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSH 378 (629)
T ss_pred HHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhh
Q ss_pred hcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC----------hhHHHHHHHHHHh
Q 037236 686 HAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPEEAD----------AGIWSSLLRSCRT 754 (953)
Q Consensus 686 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~----------~~~~~~ll~~~~~ 754 (953)
..+.++.|...|....+...-..- ...-..+.-.|.+.|+-++-.++.+.+. +++ ..++-..+--...
T Consensus 379 sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~-p~nt~s~ssq~l~a~~~~v~glfaf~ 457 (629)
T KOG2300|consen 379 SVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIG-PLNTNSLSSQRLEASILYVYGLFAFK 457 (629)
T ss_pred hcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcC-CCCCCcchHHHHHHHHHHHHHHHHHH
Q ss_pred cCChhHHHHHHHHHhccCCC------CcchHHHHHHHHHhcCCchHHHH-HHHHHHHCCCccCCceeEEEeCCEEEEEee
Q 037236 755 YGALKMGEKVAKTLLELEPD------KAENYVLVSNIYAGSEKWDDVRM-MRQRMKERGLQKEAGCSWIELGGNIHSFVV 827 (953)
Q Consensus 755 ~g~~~~a~~~~~~~~~l~p~------~~~~~~~l~~~y~~~g~~~~a~~-~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~ 827 (953)
.+++.+|+....+.+++.-- .+-..++|+++....|+..|+.+ ++-.|.-..-.+
T Consensus 458 qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~------------------ 519 (629)
T KOG2300|consen 458 QNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIP------------------ 519 (629)
T ss_pred hccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCC------------------
Q ss_pred CCCCCccHHHHHHHHHHHHHHHHhcC
Q 037236 828 GDNMHPEWEEIRGMWGRLEEQISKIG 853 (953)
Q Consensus 828 ~d~~hp~~~~i~~~l~~l~~~~~~~~ 853 (953)
.||..--..+.++.|.+...+.|
T Consensus 520 ---Di~vqLws~si~~~L~~a~g~~~ 542 (629)
T KOG2300|consen 520 ---DIPVQLWSSSILTDLYQALGEKG 542 (629)
T ss_pred ---CchHHHHHHHHHHHHHHHhCcch
No 377
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=54.52 E-value=73 Score=32.12 Aligned_cols=61 Identities=10% Similarity=0.228 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhcc--CCCCc----chHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 744 IWSSLLRSCRTYGALKMGEKVAKTLLEL--EPDKA----ENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 744 ~~~~ll~~~~~~g~~~~a~~~~~~~~~l--~p~~~----~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
..++++..-....+.+.-...++..++. +..|. .+..-|+++|...|.+..-.++.+.+..
T Consensus 107 sIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~ 173 (440)
T KOG1464|consen 107 SINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQ 173 (440)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHH
Confidence 4444444444444555554444444331 11222 2234678888888888877777776653
No 378
>PF13934 ELYS: Nuclear pore complex assembly
Probab=54.37 E-value=2e+02 Score=28.90 Aligned_cols=106 Identities=23% Similarity=0.227 Sum_probs=60.2
Q ss_pred HHHHHHHH--HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHH
Q 037236 642 WNAIIGGH--GIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDM 719 (953)
Q Consensus 642 ~~~li~~~--~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~ 719 (953)
+...+.|+ ..++++++|++++..- .+.|+... -++.++...|+.+.|..+++.+. +.-.+.+....+...
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~~--~Il~~L~~~~~~~lAL~y~~~~~---p~l~s~~~~~~~~~~ 150 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP---SLIPWFPD--KILQALLRRGDPKLALRYLRAVG---PPLSSPEALTLYFVA 150 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC---CCCcccHH--HHHHHHHHCCChhHHHHHHHhcC---CCCCCHHHHHHHHHH
Confidence 33445554 3566777777776321 12222221 35666666788888888877551 111112323333333
Q ss_pred HhhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcC
Q 037236 720 LGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSCRTYG 756 (953)
Q Consensus 720 l~~~g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~~~g 756 (953)
..+|.+.||..+.+..+.+-....|..++..|....
T Consensus 151 -La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 151 -LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred -HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHh
Confidence 566888888888887664333457777777776544
No 379
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=54.33 E-value=1.4e+02 Score=29.98 Aligned_cols=81 Identities=9% Similarity=-0.046 Sum_probs=52.5
Q ss_pred HHhcCCHHHHHHHhhhcC--CCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHH
Q 037236 618 YAKCGCLEQSRRVFDRLK--DKDV-TSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFT-FVGILMACNHAGLVENG 693 (953)
Q Consensus 618 y~~~g~~~~A~~~~~~~~--~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t-~~~ll~a~~~~g~~~~a 693 (953)
|....+++.|...|.+.. .|++ .-|+.-+.++.+..+++.+.+--.+.++ +.||.+- ...+..+......+++|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHH
Confidence 344456677777766654 4544 4566667777777777777777766666 6776544 44455556666777777
Q ss_pred HHHHHHH
Q 037236 694 LKYFSQM 700 (953)
Q Consensus 694 ~~~~~~m 700 (953)
+..+.+.
T Consensus 98 I~~Lqra 104 (284)
T KOG4642|consen 98 IKVLQRA 104 (284)
T ss_pred HHHHHHH
Confidence 7777666
No 380
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=53.27 E-value=26 Score=23.32 Aligned_cols=32 Identities=13% Similarity=-0.005 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhcCChhHHHHH--HHHHhccCCCC
Q 037236 744 IWSSLLRSCRTYGALKMGEKV--AKTLLELEPDK 775 (953)
Q Consensus 744 ~~~~ll~~~~~~g~~~~a~~~--~~~~~~l~p~~ 775 (953)
-|-++...+...|+++.|+.. ++-+..++|.|
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 355666677777888888887 44666666643
No 381
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=52.74 E-value=1.7e+02 Score=30.46 Aligned_cols=115 Identities=11% Similarity=0.065 Sum_probs=58.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHH
Q 037236 645 IIGGHGIHGYGKEAIELFEKMLALGHKPDT---FTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK--LEHYACVVDM 719 (953)
Q Consensus 645 li~~~~~~g~~~~A~~l~~~m~~~g~~P~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~lv~~ 719 (953)
+..+-.+.|+..+|.+.|+.+.+. .|-. .....|+.+|....-+.+...++-+. .+.. .|. ...|+ .+
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakY-Ddis-lPkSA~icYT---aA 353 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKY-DDIS-LPKSAAICYT---AA 353 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cccc-CcchHHHHHH---HH
Confidence 444555678888888888877663 3411 22345667777666666655554433 1111 122 12222 22
Q ss_pred HhhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHH
Q 037236 720 LGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYV 780 (953)
Q Consensus 720 l~~~g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~ 780 (953)
+.+ +..+-++. .|+..+-.-|-.+ -..|.++..++.|.+|.-|....
T Consensus 354 LLK------~RAVa~kF--spd~asrRGLS~A------E~~AvEAihRAvEFNPHVPkYLL 400 (556)
T KOG3807|consen 354 LLK------TRAVSEKF--SPETASRRGLSTA------EINAVEAIHRAVEFNPHVPKYLL 400 (556)
T ss_pred HHH------HHHHHhhc--CchhhhhccccHH------HHHHHHHHHHHhhcCCCCcHHHH
Confidence 222 11222221 3443332222111 12577888899999998776554
No 382
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=52.01 E-value=24 Score=21.29 Aligned_cols=26 Identities=27% Similarity=0.183 Sum_probs=13.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 037236 642 WNAIIGGHGIHGYGKEAIELFEKMLA 667 (953)
Q Consensus 642 ~~~li~~~~~~g~~~~A~~l~~~m~~ 667 (953)
|..+...+...|++++|...|++.++
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 44445555555555555555555544
No 383
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=51.51 E-value=5.9e+02 Score=31.96 Aligned_cols=254 Identities=7% Similarity=-0.054 Sum_probs=137.4
Q ss_pred HHhccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccchhhHHHHHHHHhCCCCc
Q 037236 427 NVFHGMDSRTVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGD 506 (953)
Q Consensus 427 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~ 506 (953)
.+...+.++|...-...+..+.+.+. .++...+...+.. +|...-...+.++...+........+..+.+. +|
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d 697 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTP-PGFGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PD 697 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcc-hhHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CC
Confidence 34444456666666666666666554 3344444444432 23333334444444332211112222223222 45
Q ss_pred hhhHhhHHHHHHhcCChhHHHHHHHhcccCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccc
Q 037236 507 SFTGISLLSLYMHCEKSSSARVLFDEMEDKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQL 586 (953)
Q Consensus 507 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 586 (953)
..+....++.+...+.- ....+...+..+|...-...+.++.+.+..+. +.... -.++...-.....++...
T Consensus 698 ~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~~ 769 (897)
T PRK13800 698 PVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLATL 769 (897)
T ss_pred HHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHHh
Confidence 56666666666554322 12344555566666555555666665544322 12222 244555555555566665
Q ss_pred cchHH-HHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHH-HHhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 037236 587 SALRL-GKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSR-RVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEK 664 (953)
Q Consensus 587 ~~~~~-a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 664 (953)
+..+. +...+..+.+ +++..+-.+.+..+.+.|..+.+. .+...+.++|...-...+.++...+. .++...+-.
T Consensus 770 ~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~ 845 (897)
T PRK13800 770 GAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVE 845 (897)
T ss_pred ccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHH
Confidence 54332 2233333332 457778888888899888866553 34444456676666667777777765 467777777
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037236 665 MLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQK 702 (953)
Q Consensus 665 m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 702 (953)
+++ .|+...-...+.++...+....+...+..+.+
T Consensus 846 ~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 846 ALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred Hhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 776 67777777777888776444566777766654
No 384
>PRK14015 pepN aminopeptidase N; Provisional
Probab=50.62 E-value=3.9e+02 Score=33.20 Aligned_cols=150 Identities=11% Similarity=0.027 Sum_probs=83.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhc
Q 037236 645 IIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRA 723 (953)
Q Consensus 645 li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~ 723 (953)
.+.-++..+..+......++..+. .|..--.+-+.++.+.+.. +....++...+...-.|- ++-|-.+...--+.
T Consensus 688 ~l~~l~~~~~~~~~~~~~~~~~~a---~~mtd~~~al~~l~~~~~~-~~~~~l~~f~~~~~~~~lv~~kwf~~qa~~~~~ 763 (875)
T PRK14015 688 CLSYLAAADDEEAAELAEAQFDQA---DNMTDRLAALSALVNADLP-ERDEALADFYDRWKDDPLVMDKWFALQATSPAP 763 (875)
T ss_pred HHHHHHhCCChhHHHHHHHHHhhC---CCHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHhCCCchhhHHHHHHHhCCCCc
Confidence 333334434333333344444442 3444444555566554442 333344444444445554 44454444333333
Q ss_pred CCHHHHHHHHHhCCC-CCChhHHHHHHHHHHhcCCh------hHH-HHHHHHHhccCCCCcchHHHHHHHHHhcCCchHH
Q 037236 724 GKLDDAFKLIIEMPE-EADAGIWSSLLRSCRTYGAL------KMG-EKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDV 795 (953)
Q Consensus 724 g~~~eA~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~------~~a-~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a 795 (953)
+-++...++.+.-.+ ..++.-.++|++++...+-. ..| .-+.+.++++++-||..-..|...+..=.++++.
T Consensus 764 ~~~~~v~~l~~hp~f~~~npn~~ral~~~f~~~n~~~fh~~~g~gy~~~~~~i~~ld~~Np~~aarl~~~~~~~~~~~~~ 843 (875)
T PRK14015 764 DTLERVRALMQHPAFDLKNPNRVRSLIGAFAAANPAGFHAADGSGYRFLADQILALDKINPQVAARLATPLIRWRRYDPK 843 (875)
T ss_pred CHHHHHHHHhcCCCCCCCCCcHHHHHHHHHhhcCCcccCCCCCcHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhhccCHH
Confidence 334444444443333 24577788999988543321 223 4577888999999999999999999999999888
Q ss_pred HHH
Q 037236 796 RMM 798 (953)
Q Consensus 796 ~~~ 798 (953)
.+.
T Consensus 844 r~~ 846 (875)
T PRK14015 844 RQA 846 (875)
T ss_pred HHH
Confidence 773
No 385
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=50.57 E-value=3.1e+02 Score=28.52 Aligned_cols=67 Identities=24% Similarity=0.220 Sum_probs=31.2
Q ss_pred CchHHHHHH-HhhHhcC-ChhHHHHHHhc-CCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHhccCCCCCchhhHHHHH
Q 037236 302 ELMVNNALV-DMYAKCG-FLSEAQILFDK-NNNKNVVSWNTIIGAFSMAGDVCGTFDLLRKMQMKEEEMKPNEVTVLNVL 378 (953)
Q Consensus 302 ~~~~~~~li-~~~~~~g-~~~~A~~~f~~-~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~p~~~t~~~ll 378 (953)
+..+.+.|. +-+.+.| -..-|.++|.. +.+.| .|.+|+.+-+.+.-+.-+++ ++|+..+-...-
T Consensus 164 ~~tvl~~L~~d~LVkeGi~l~F~~~lFk~~~~Ek~---i~~lis~Lrkg~md~rLmef----------fPpnkrs~E~Fa 230 (412)
T KOG2297|consen 164 PATVLQSLLNDNLVKEGIALSFAVKLFKEWLVEKD---INDLISSLRKGKMDDRLMEF----------FPPNKRSVEHFA 230 (412)
T ss_pred CHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHhhcc---HHHHHHHHHhcChHhHHHHh----------cCCcchhHHHHH
Confidence 333444433 2334444 23446666664 33333 35566655554444443333 466655544444
Q ss_pred HHh
Q 037236 379 TSC 381 (953)
Q Consensus 379 ~~~ 381 (953)
..+
T Consensus 231 k~F 233 (412)
T KOG2297|consen 231 KYF 233 (412)
T ss_pred HHH
Confidence 433
No 386
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=49.95 E-value=4e+02 Score=33.07 Aligned_cols=151 Identities=10% Similarity=0.007 Sum_probs=83.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHh
Q 037236 643 NAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLG 721 (953)
Q Consensus 643 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~ 721 (953)
|..+.-++..++.+......++..+. .|..--.+-+.++.+.+. .+....++...+...-.|- ++-|-.+...-.
T Consensus 676 n~~l~~l~~~~~~~~~~~~~~~~~~a---~~mtd~~~al~~l~~~~~-~~~~~~l~~f~~~~~~~~lv~~kwf~~qa~~~ 751 (863)
T TIGR02414 676 NACLSYLSAADDAEIRNLALEQFKSA---DNMTDRLAALSALVHFES-DFRERALAAFYQKWKDDPLVMDKWFALQATSP 751 (863)
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHhC---CCHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHCCCchhHHHHHHHHhCCC
Confidence 34444444445443333333444432 234334445555554433 2333344444444445554 444444443322
Q ss_pred hcCCHHHHHHHHHhCCC-CCChhHHHHHHHHHHhcCC-------hhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCch
Q 037236 722 RAGKLDDAFKLIIEMPE-EADAGIWSSLLRSCRTYGA-------LKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWD 793 (953)
Q Consensus 722 ~~g~~~eA~~~~~~~~~-~~~~~~~~~ll~~~~~~g~-------~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~ 793 (953)
..+-++...++.+.-.+ -.++.-.++|++++...+. -+.=.-+.+.+++++|-||..-..|...+..=.+++
T Consensus 752 ~~~~~~~v~~l~~h~~f~~~npn~~ral~~~f~~~n~~~fh~~~g~gy~~~~~~i~~ld~~Np~~aarl~~~~~~w~~~~ 831 (863)
T TIGR02414 752 RPDTLERVKALLQHPAFDLKNPNRVRALIGAFANNNLVRFHDISGSGYRFLADQIIAIDRFNPQVAARLLEPLTRWRKLD 831 (863)
T ss_pred cccHHHHHHHHhcCCCCCcCCCcHHHHHHHHHHhcCcccccCCCCcHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhhcCC
Confidence 33333444444333333 2356778899998853321 122345778889999999999999999999999998
Q ss_pred HHHH
Q 037236 794 DVRM 797 (953)
Q Consensus 794 ~a~~ 797 (953)
+..+
T Consensus 832 ~~r~ 835 (863)
T TIGR02414 832 PKRQ 835 (863)
T ss_pred HHHH
Confidence 8876
No 387
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=49.22 E-value=26 Score=34.46 Aligned_cols=58 Identities=24% Similarity=0.324 Sum_probs=41.4
Q ss_pred HHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 037236 719 MLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKA 776 (953)
Q Consensus 719 ~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~ 776 (953)
++.+.|+.+.|.+++++... +.....|--+...--+.|+++.|.+++++.++++|+|.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 34556777777777776653 23456777777777778888888888888888888763
No 388
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=48.40 E-value=23 Score=36.17 Aligned_cols=60 Identities=17% Similarity=0.216 Sum_probs=31.1
Q ss_pred hcCCHHHHHHHHHhCCC-CC-ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHH
Q 037236 722 RAGKLDDAFKLIIEMPE-EA-DAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVL 781 (953)
Q Consensus 722 ~~g~~~eA~~~~~~~~~-~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~ 781 (953)
+.|+.++|..+|+.... .| ++.+..-++...-.++++-+|...+-+++.+.|.|+.+.+.
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvn 189 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVN 189 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhh
Confidence 34444444444443321 22 23333333333344556667777777777777777766553
No 389
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=47.83 E-value=1.9e+02 Score=32.81 Aligned_cols=24 Identities=17% Similarity=0.491 Sum_probs=20.9
Q ss_pred HHHHHHHHhcCCHHHHHHHhhhcC
Q 037236 612 CSIIDMYAKCGCLEQSRRVFDRLK 635 (953)
Q Consensus 612 ~~li~~y~~~g~~~~A~~~~~~~~ 635 (953)
..|+.-|.+++++++|..++..|.
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCC
Confidence 457778999999999999999887
No 390
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=47.24 E-value=91 Score=31.05 Aligned_cols=62 Identities=16% Similarity=0.169 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHhcCChhHHHHHH-------HHHhccCC--C----CcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 743 GIWSSLLRSCRTYGALKMGEKVA-------KTLLELEP--D----KAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 743 ~~~~~ll~~~~~~g~~~~a~~~~-------~~~~~l~p--~----~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
.++--+.|.|+..|+.+.....+ +++++.+. . ......++|.++...|++++|.+.+..+-.
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~ 193 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIG 193 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHc
Confidence 34555566666666644444444 44444332 1 245667899999999999999998877754
No 391
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=46.85 E-value=1.4e+02 Score=34.96 Aligned_cols=32 Identities=13% Similarity=0.053 Sum_probs=0.0
Q ss_pred hcCChhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 037236 550 QNKLPVEAIVLFRRMFSIGVQPCEISIVSILS 581 (953)
Q Consensus 550 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 581 (953)
+.|++.+|.+.+-.+......|..+-..-+..
T Consensus 507 ~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d 538 (566)
T PF07575_consen 507 DEGDFREAASLLVSLLKSPIAPKSFWPLLLCD 538 (566)
T ss_dssp --------------------------------
T ss_pred hhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHH
Confidence 34777788887777777777776655544444
No 392
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=46.75 E-value=1.3e+02 Score=33.14 Aligned_cols=140 Identities=14% Similarity=0.167 Sum_probs=96.0
Q ss_pred hcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHH
Q 037236 686 HAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEK 763 (953)
Q Consensus 686 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~ 763 (953)
..|++-.|-+-.....+.+.-.|+ +.-.........|.++.|...+..... .....+...++......|+.+.|..
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~--~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPV--LIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCch--hhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 456666555444444455544554 333334457788999999999876542 3456677888888888899999999
Q ss_pred HHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCccCCceeEEEeCCEEEEEeeCC
Q 037236 764 VAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKERGLQKEAGCSWIELGGNIHSFVVGD 829 (953)
Q Consensus 764 ~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~d 829 (953)
.++.++.-+-+++.....-+-.-.+.|-++++.-.++.+-. +.++...-|+-.-.....|-.|.
T Consensus 379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~--~~~~~~~g~v~~~~~~~~~~~~~ 442 (831)
T PRK15180 379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLL--LNPETQSGWVNFLSSTQYFNDGN 442 (831)
T ss_pred HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhc--cCChhcccceeeeccceeccCcc
Confidence 99999988777777655555556667888999998888765 33444455776666666665554
No 393
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=46.11 E-value=45 Score=34.22 Aligned_cols=78 Identities=15% Similarity=0.129 Sum_probs=57.1
Q ss_pred HHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCccCCceeEEEeCCEEEEEeeCCCC
Q 037236 752 CRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKERGLQKEAGCSWIELGGNIHSFVVGDNM 831 (953)
Q Consensus 752 ~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~d~~ 831 (953)
.++.|+.|.|.+.++.++.+.|+++....-++...-..++.-+|...+-+. +.-.|+.|-- .+..++.
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~A----LtisP~nseA--------LvnR~RT 193 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKA----LTISPGNSEA--------LVNRART 193 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhhee----eeeCCCchHH--------Hhhhhcc
Confidence 467899999999999999999999999999998888777777777765422 3334555422 2334456
Q ss_pred CccHHHHHHH
Q 037236 832 HPEWEEIRGM 841 (953)
Q Consensus 832 hp~~~~i~~~ 841 (953)
-|-.+.|...
T Consensus 194 ~plV~~iD~r 203 (472)
T KOG3824|consen 194 TPLVSAIDRR 203 (472)
T ss_pred chHHHHHHHH
Confidence 6777777653
No 394
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=45.97 E-value=4.1e+02 Score=29.72 Aligned_cols=103 Identities=15% Similarity=0.103 Sum_probs=69.0
Q ss_pred HHHHhcCCHHHHHHHhhhcC---CC---------CHHHHHHHHHHHHhcCChHHHHHHHHHHHH-------CCCCCCH--
Q 037236 616 DMYAKCGCLEQSRRVFDRLK---DK---------DVTSWNAIIGGHGIHGYGKEAIELFEKMLA-------LGHKPDT-- 674 (953)
Q Consensus 616 ~~y~~~g~~~~A~~~~~~~~---~~---------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-------~g~~P~~-- 674 (953)
..+.-.|++.+|.+++.... .+ .-..||.|...+.+.|.+..+..+|.+.++ .|++|..
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 45556789999988887654 11 123478887777777887777777777663 5666621
Q ss_pred --------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 037236 675 --------FTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDML 720 (953)
Q Consensus 675 --------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l 720 (953)
.......-.+.+.|++-.|.+.|...++.+.-.|. .|-.|..++
T Consensus 328 tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPr--lWLRlAEcC 379 (696)
T KOG2471|consen 328 TLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPR--LWLRLAECC 379 (696)
T ss_pred ehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcH--HHHHHHHHH
Confidence 12223455678999999999999999888776664 455555444
No 395
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.17 E-value=23 Score=41.70 Aligned_cols=94 Identities=16% Similarity=0.265 Sum_probs=62.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChh
Q 037236 680 ILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSCRTYGALK 759 (953)
Q Consensus 680 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 759 (953)
+|.-+.+.|-.+-|+.+.+.=... .++...+|+++.|++..++. .|..+|..|+.....+||.+
T Consensus 626 iIaYLqKkgypeiAL~FVkD~~tR-------------F~LaLe~gnle~ale~akkl---dd~d~w~rLge~Al~qgn~~ 689 (1202)
T KOG0292|consen 626 IIAYLQKKGYPEIALHFVKDERTR-------------FELALECGNLEVALEAAKKL---DDKDVWERLGEEALRQGNHQ 689 (1202)
T ss_pred HHHHHHhcCCcceeeeeecCcchh-------------eeeehhcCCHHHHHHHHHhc---CcHHHHHHHHHHHHHhcchH
Confidence 344455677777776654322111 13456788899888887774 46778999998888899999
Q ss_pred HHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHH
Q 037236 760 MGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRM 797 (953)
Q Consensus 760 ~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 797 (953)
.|+..+++.-..+ .|+-+|.-.|+.+.-.+
T Consensus 690 IaEm~yQ~~knfe--------kLsfLYliTgn~eKL~K 719 (1202)
T KOG0292|consen 690 IAEMCYQRTKNFE--------KLSFLYLITGNLEKLSK 719 (1202)
T ss_pred HHHHHHHHhhhhh--------heeEEEEEeCCHHHHHH
Confidence 9988888865543 35556666666554433
No 396
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=45.11 E-value=2.9e+02 Score=26.54 Aligned_cols=38 Identities=24% Similarity=0.395 Sum_probs=28.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHH
Q 037236 747 SLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNI 785 (953)
Q Consensus 747 ~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 785 (953)
..+..|.+.|.+++|+++++++++ +|++...-..|..+
T Consensus 116 ~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~I 153 (200)
T cd00280 116 QAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMI 153 (200)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHH
Confidence 445679999999999999999998 88777654444333
No 397
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=44.10 E-value=3.3e+02 Score=28.80 Aligned_cols=90 Identities=19% Similarity=0.091 Sum_probs=57.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHH
Q 037236 645 IIGGHGIHGYGKEAIELFEKMLALGH-KP--DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDML 720 (953)
Q Consensus 645 li~~~~~~g~~~~A~~l~~~m~~~g~-~P--~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l 720 (953)
=.+-|.++.++..|...|.+-+.... .| +.+.|+.-..+-...|++..++.=....++ ++|+ ...|--=..++
T Consensus 87 eGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~---~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 87 EGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALK---LKPTHLKAYIRGAKCL 163 (390)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh---cCcchhhhhhhhhHHH
Confidence 34556777778888888887776532 33 456676666666677777777766555543 5665 44444444556
Q ss_pred hhcCCHHHHHHHHHhCC
Q 037236 721 GRAGKLDDAFKLIIEMP 737 (953)
Q Consensus 721 ~~~g~~~eA~~~~~~~~ 737 (953)
....++++|...+++..
T Consensus 164 ~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 164 LELERFAEAVNWCEEGL 180 (390)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 66777777777777653
No 398
>PF15469 Sec5: Exocyst complex component Sec5
Probab=44.08 E-value=2.7e+02 Score=26.78 Aligned_cols=85 Identities=19% Similarity=0.304 Sum_probs=43.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCC
Q 037236 679 GILMACNHAGLVENGLKYFSQMQKLHAVKP-KLEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSCRTYGA 757 (953)
Q Consensus 679 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 757 (953)
.-+.-|...|+++.+...|.++...++-.. ....+..+ +.+..+.++... ..+|..|... ...
T Consensus 91 ~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v---------~~eve~ii~~~r----~~l~~~L~~~---~~s 154 (182)
T PF15469_consen 91 SNLRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQKV---------WSEVEKIIEEFR----EKLWEKLLSP---PSS 154 (182)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHH---------HHHHHHHHHHHH----HHHHHHHhCC---CCC
Confidence 445667778888888888877755433222 11222111 223333332221 1222222221 145
Q ss_pred hhHHHHHHHHHhccCCCCcchH
Q 037236 758 LKMGEKVAKTLLELEPDKAENY 779 (953)
Q Consensus 758 ~~~a~~~~~~~~~l~p~~~~~~ 779 (953)
.+......+.+++|+|+...++
T Consensus 155 ~~~~~~~i~~Ll~L~~~~dPi~ 176 (182)
T PF15469_consen 155 QEEFLKLIRKLLELNVEEDPIW 176 (182)
T ss_pred HHHHHHHHHHHHhCCCCCCHHH
Confidence 6677778888888887544433
No 399
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=43.75 E-value=5.9e+02 Score=29.75 Aligned_cols=145 Identities=13% Similarity=0.103 Sum_probs=68.8
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHH-----hh--cCCH
Q 037236 654 YGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDML-----GR--AGKL 726 (953)
Q Consensus 654 ~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l-----~~--~g~~ 726 (953)
+...|..++.+..+.| .|-..--...+..+.. +.++.+.-.+..+.+ .+.+--...-..+.+.. .+ ..+.
T Consensus 379 ~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~-~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~ 455 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAE-LGYEVAQSNAAYLLDQSEEDLFSRGVISTL 455 (552)
T ss_pred CHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHH-hhhhHHhhHHHHHHHhccccccccccccch
Confidence 5677777777777766 3332222233333333 555555555444422 22211111001111111 11 2245
Q ss_pred HHHHHHHHhCCCCCChhHHHHHHHHHHhc----CChhHHHHHHHHHhccCCCCcchHHHHHHHHHhc---CCchHHHHHH
Q 037236 727 DDAFKLIIEMPEEADAGIWSSLLRSCRTY----GALKMGEKVAKTLLELEPDKAENYVLVSNIYAGS---EKWDDVRMMR 799 (953)
Q Consensus 727 ~eA~~~~~~~~~~~~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~---g~~~~a~~~~ 799 (953)
+.+..++.+....-+......|...+..- .+.+.+-..+.++-+.. +.....|+.+|-.- .++..|.+.+
T Consensus 456 ~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~ 532 (552)
T KOG1550|consen 456 ERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYY 532 (552)
T ss_pred hHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHH
Confidence 55666666555444554444444443221 25666666666665554 56666667666542 1156666666
Q ss_pred HHHHH
Q 037236 800 QRMKE 804 (953)
Q Consensus 800 ~~m~~ 804 (953)
....+
T Consensus 533 ~~~~~ 537 (552)
T KOG1550|consen 533 DQASE 537 (552)
T ss_pred HHHHh
Confidence 55544
No 400
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=43.59 E-value=4.4e+02 Score=28.21 Aligned_cols=113 Identities=16% Similarity=0.157 Sum_probs=69.1
Q ss_pred hHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhh---cCCHHHH
Q 037236 655 GKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGR---AGKLDDA 729 (953)
Q Consensus 655 ~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~---~g~~~eA 729 (953)
.+.-+.+++++++. .| +..-...++..+.+....++..+-++++... .|+ ...|...++.... .-.+++.
T Consensus 47 ~E~klsilerAL~~--np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~---~~~~~~LW~~yL~~~q~~~~~f~v~~~ 121 (321)
T PF08424_consen 47 AERKLSILERALKH--NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK---NPGSPELWREYLDFRQSNFASFTVSDV 121 (321)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---CCCChHHHHHHHHHHHHHhccCcHHHH
Confidence 45567788888775 56 4555677778888888888888888888764 233 5556555554433 1233344
Q ss_pred HHHHHh-------CCCCC----------ChhHHHHHHH---HHHhcCChhHHHHHHHHHhccC
Q 037236 730 FKLIIE-------MPEEA----------DAGIWSSLLR---SCRTYGALKMGEKVAKTLLELE 772 (953)
Q Consensus 730 ~~~~~~-------~~~~~----------~~~~~~~ll~---~~~~~g~~~~a~~~~~~~~~l~ 772 (953)
.++|.+ ..... .......++. -++..|..|.|..+++.++|++
T Consensus 122 ~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 122 RDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 444332 21111 1223333333 3467899999999999999975
No 401
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=43.24 E-value=6.4e+02 Score=29.96 Aligned_cols=39 Identities=21% Similarity=0.330 Sum_probs=18.9
Q ss_pred HHHHHHhcCChhHHHHHHHhccc---CCcccHHHHHHHHHhc
Q 037236 513 LLSLYMHCEKSSSARVLFDEMED---KSLVSWNTMIAGYSQN 551 (953)
Q Consensus 513 li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~ 551 (953)
+|--+.+||++++|.++.....+ +....+-..+..|+..
T Consensus 117 ~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 117 LIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp HHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTT
T ss_pred HHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhC
Confidence 44445667777777766633322 2223444445555443
No 402
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=42.77 E-value=6.4e+02 Score=29.90 Aligned_cols=44 Identities=18% Similarity=0.112 Sum_probs=24.7
Q ss_pred hcCChhHHHHHHHhcccC----------CcccHHHHHHH--HHhcCChhHHHHHHH
Q 037236 519 HCEKSSSARVLFDEMEDK----------SLVSWNTMIAG--YSQNKLPVEAIVLFR 562 (953)
Q Consensus 519 ~~g~~~~A~~~f~~~~~~----------~~~~~~~li~~--~~~~g~~~~A~~~~~ 562 (953)
-.+++..|...++.+.+. ....+...+.| +-..|+.+.|+..|.
T Consensus 373 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 373 IRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356677777777666531 11223333333 334678888888886
No 403
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=42.15 E-value=3.1e+02 Score=27.82 Aligned_cols=185 Identities=11% Similarity=0.054 Sum_probs=0.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhc
Q 037236 645 IIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMAC-NHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRA 723 (953)
Q Consensus 645 li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~-~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~ 723 (953)
++...-+.|++++++..++++...+...+..=.+.+..+| ...|....+++.+..+.+...-..+......+-+.-.+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk~ki 86 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYKKKI 86 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHHHHH
Q ss_pred CC-----HHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCh-----------------hHHHHHHHHHhc-----cCCCCc
Q 037236 724 GK-----LDDAFKLIIEMPEEADAGIWSSLLRSCRTYGAL-----------------KMGEKVAKTLLE-----LEPDKA 776 (953)
Q Consensus 724 g~-----~~eA~~~~~~~~~~~~~~~~~~ll~~~~~~g~~-----------------~~a~~~~~~~~~-----l~p~~~ 776 (953)
.. -.+.+++++... -|....-.+.+-.+...||+ +.|..+++++++ +.|.+|
T Consensus 87 e~EL~~~C~eii~lId~~L-ip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p 165 (236)
T PF00244_consen 87 EDELIDICNEIIRLIDKSL-IPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHP 165 (236)
T ss_dssp HHHHHHHHHHHHHHHHHTC-HHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSH
T ss_pred HHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCc
Q ss_pred chHHHHHH----HHHhcCCchHHHHHHHHHHHCCCccCCceeEEEeCCEEEEEeeCCCCCccHHHHHHHHHH
Q 037236 777 ENYVLVSN----IYAGSEKWDDVRMMRQRMKERGLQKEAGCSWIELGGNIHSFVVGDNMHPEWEEIRGMWGR 844 (953)
Q Consensus 777 ~~~~~l~~----~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~ 844 (953)
.-.-+..| .|--.|+.++|.++-+..-+..+....+.+ +.+.+.+..|...|.+
T Consensus 166 ~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~~l~--------------e~~~~d~~~ilqlLrd 223 (236)
T PF00244_consen 166 LRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELDTLS--------------EESYKDSTLILQLLRD 223 (236)
T ss_dssp HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGGGSH--------------TTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhcccc--------------hhhhHHHHHHHHHHHH
No 404
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=42.04 E-value=4.5e+02 Score=27.90 Aligned_cols=131 Identities=12% Similarity=0.157 Sum_probs=84.9
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh------cCCHHHHHHHHHHHHHhcCCCCC
Q 037236 636 DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNH------AGLVENGLKYFSQMQKLHAVKPK 709 (953)
Q Consensus 636 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~------~g~~~~a~~~~~~m~~~~~~~p~ 709 (953)
+.|-..|+-- -+++++.++++....+ .|-....-..|.+|-. .-+|..-..+|+.+.. +.|+
T Consensus 261 dQDr~lW~r~--------lI~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~---~apS 328 (415)
T COG4941 261 DQDRSLWDRA--------LIDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ---AAPS 328 (415)
T ss_pred ccchhhhhHH--------HHHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH---hCCC
Confidence 4566667643 3578888888888876 4887777777776642 2356666677776643 5566
Q ss_pred h-hHHHHHHHHHhhcCCHHHHHHHHHhCCCCC----ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchH
Q 037236 710 L-EHYACVVDMLGRAGKLDDAFKLIIEMPEEA----DAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENY 779 (953)
Q Consensus 710 ~-~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~ 779 (953)
+ .+.|--| +++..-=.+.++..++....+| -...|..-.+.+.+.|..++|..+|++++++.++....-
T Consensus 329 PvV~LNRAV-Ala~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~ 402 (415)
T COG4941 329 PVVTLNRAV-ALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERA 402 (415)
T ss_pred CeEeehHHH-HHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHH
Confidence 3 3333332 2333333456666666665543 233556666778999999999999999999988665433
No 405
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=41.75 E-value=1.8e+02 Score=24.26 Aligned_cols=62 Identities=15% Similarity=0.081 Sum_probs=30.2
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCC--CcchHHHHHHHHHhcCCch-HHHHHHHHH
Q 037236 741 DAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPD--KAENYVLVSNIYAGSEKWD-DVRMMRQRM 802 (953)
Q Consensus 741 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~--~~~~~~~l~~~y~~~g~~~-~a~~~~~~m 802 (953)
|....-.+...+...|+++.|...+-.+++.+|+ +..+-..|..++...|.-+ -+.+.|++|
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 3344445555555566666665555555555543 3455555555555555532 344455554
No 406
>PRK13342 recombination factor protein RarA; Reviewed
Probab=41.69 E-value=5e+02 Score=28.99 Aligned_cols=47 Identities=19% Similarity=0.297 Sum_probs=32.4
Q ss_pred cHHHHHHHHHh---cCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccc
Q 037236 540 SWNTMIAGYSQ---NKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQL 586 (953)
Q Consensus 540 ~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 586 (953)
.+..+++++.+ ..+++.|+.++.+|.+.|..|..+.-..+..++...
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edi 278 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDI 278 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Confidence 44555665554 578999999999999999888655544444444443
No 407
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=40.92 E-value=59 Score=22.82 Aligned_cols=24 Identities=21% Similarity=0.094 Sum_probs=14.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC
Q 037236 645 IIGGHGIHGYGKEAIELFEKMLAL 668 (953)
Q Consensus 645 li~~~~~~g~~~~A~~l~~~m~~~ 668 (953)
+..+|...|+.+.|.+++++.+..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445566666666666666666553
No 408
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=40.83 E-value=40 Score=20.95 Aligned_cols=28 Identities=21% Similarity=0.331 Sum_probs=18.7
Q ss_pred CChhHHHHHHHHHhccCCCCcchHHHHH
Q 037236 756 GALKMGEKVAKTLLELEPDKAENYVLVS 783 (953)
Q Consensus 756 g~~~~a~~~~~~~~~l~p~~~~~~~~l~ 783 (953)
|+.+.+..++++++...|.++..+...+
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 4566777777777777776666555443
No 409
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=40.70 E-value=1.4e+02 Score=33.01 Aligned_cols=122 Identities=16% Similarity=0.095 Sum_probs=65.4
Q ss_pred chHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCC-------------CCHHHHHHHHHHH-----
Q 037236 588 ALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKD-------------KDVTSWNAIIGGH----- 649 (953)
Q Consensus 588 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------------~~~~~~~~li~~~----- 649 (953)
.+++-.+.+..+.+.| ...+...-||.|.+.+++++|...+++-.+ ..+..-..++.+.
T Consensus 69 ~~~e~i~lL~~l~~~g---~ad~lp~TIDSyTR~n~y~~A~~~l~~s~~~~~s~LNGfP~VnhGv~~~R~l~~~v~~PvQ 145 (480)
T TIGR01503 69 LLDEHIELLRTLQEEG---GADFLPSTIDAYTRQNRYDEAAVGIKESIKAGRSLLNGFPGVNHGVKGCRKVLEAVNLPLQ 145 (480)
T ss_pred cHHHHHHHHHHHHHcc---CCCccceeeecccccccHHHHHHHHHhhhhcCcccccCCCcccccHHHHHHHHHhCCCCee
Confidence 3455555555555543 222444457778888888888877775432 1222333333332
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHH---HHh---cCCCCChhHHHHH
Q 037236 650 GIHGYGKEAIELFEKMLALGHKPD---TFTFVGILMACNHAGLVENGLKYFSQM---QKL---HAVKPKLEHYACV 716 (953)
Q Consensus 650 ~~~g~~~~A~~l~~~m~~~g~~P~---~~t~~~ll~a~~~~g~~~~a~~~~~~m---~~~---~~~~p~~~~~~~l 716 (953)
.+||.. .+..+++-+...|+.-. .++|+ --|++.=-+++++..|+.+ ... .|+..+.+.+.+|
T Consensus 146 vRHGtp-DarlL~e~~~a~G~~a~EGG~ISYn---lPYsK~vpLe~si~~WqyvdRL~g~y~e~gv~InrE~FGpL 217 (480)
T TIGR01503 146 IRHGTP-DARLLAEIILAGGFTSFEGGGISYN---IPYAKNVTLEKSLEDWQYCDRLVGFYEEQGVHINREPFGPL 217 (480)
T ss_pred ccCCCC-cHHHHHHHHHHcCCCccCCCcceec---cccCCCCCHHHHHHHHHHHHHHHHHHHhcCceeccccccCC
Confidence 345543 46677777777776552 34443 2344444566666666543 222 2555555555444
No 410
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=40.68 E-value=4.3e+02 Score=27.26 Aligned_cols=50 Identities=14% Similarity=0.034 Sum_probs=35.4
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHH
Q 037236 647 GGHGIHGYGKEAIELFEKMLALGHKPDT-------FTFVGILMACNHAGLVENGLKY 696 (953)
Q Consensus 647 ~~~~~~g~~~~A~~l~~~m~~~g~~P~~-------~t~~~ll~a~~~~g~~~~a~~~ 696 (953)
+-..+.+++++|+..+.+++..|+..|. .|...+...|...|+...-.+.
T Consensus 11 ~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~ 67 (421)
T COG5159 11 NNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDT 67 (421)
T ss_pred HHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHH
Confidence 3455678899999999999998877654 3455666777777776554443
No 411
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=40.04 E-value=2.6e+02 Score=24.64 Aligned_cols=92 Identities=12% Similarity=0.076 Sum_probs=45.2
Q ss_pred hcCCHHHHHHHHHHHHHhcCCCCCh----------hHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhc
Q 037236 686 HAGLVENGLKYFSQMQKLHAVKPKL----------EHYACVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSCRTY 755 (953)
Q Consensus 686 ~~g~~~~a~~~~~~m~~~~~~~p~~----------~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~~~ 755 (953)
..|.+++|..-++...+...-.|.. ..+..|..++.+.|++++++.-.+.
T Consensus 21 ~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~-------------------- 80 (144)
T PF12968_consen 21 QDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADR-------------------- 80 (144)
T ss_dssp HHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH--------------------
T ss_pred HhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHH--------------------
Confidence 3566666655544443433333432 2345677778888888877654432
Q ss_pred CChhHHHHHHHHHhccCCCCcchH----HHHHHHHHhcCCchHHHHHHHHH
Q 037236 756 GALKMGEKVAKTLLELEPDKAENY----VLVSNIYAGSEKWDDVRMMRQRM 802 (953)
Q Consensus 756 g~~~~a~~~~~~~~~l~p~~~~~~----~~l~~~y~~~g~~~~a~~~~~~m 802 (953)
|...+.+-=+++.+...-+ ..-+..+...|+.+||.+.++..
T Consensus 81 -----aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 81 -----ALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp -----HHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred -----HHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 2222222223333322222 23344666788888888866543
No 412
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=39.98 E-value=2.2e+02 Score=24.54 Aligned_cols=75 Identities=11% Similarity=0.044 Sum_probs=48.3
Q ss_pred ChhhHhHHHHHHHHhCCCCChhHHHHHHHHhhccCChHHHHHHhccCCCCCeecHHHHHHHHHcCCCchHHHHHHHHh
Q 037236 180 DVSFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGSSENGFSCESFDLLIKM 257 (953)
Q Consensus 180 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 257 (953)
..++|..+.+.+...+- ....+--..+..+.+.|++++|...=.....||...|-++-. .+.|..+++...+.++
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRL 95 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHH
Confidence 45566666666655543 233444444566788999999966666667799999987654 4678888888888878
No 413
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=38.95 E-value=52 Score=23.07 Aligned_cols=25 Identities=16% Similarity=0.121 Sum_probs=15.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcC
Q 037236 544 MIAGYSQNKLPVEAIVLFRRMFSIG 568 (953)
Q Consensus 544 li~~~~~~g~~~~A~~~~~~m~~~g 568 (953)
+..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4456666666666666666666443
No 414
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.73 E-value=8e+02 Score=29.84 Aligned_cols=50 Identities=8% Similarity=0.094 Sum_probs=32.2
Q ss_pred HhhHHHHHHhcCChhHHHHHHHhcccCCcccHHHHHHHHHhcCChhHHHHHHHHH
Q 037236 510 GISLLSLYMHCEKSSSARVLFDEMEDKSLVSWNTMIAGYSQNKLPVEAIVLFRRM 564 (953)
Q Consensus 510 ~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 564 (953)
..+........|+.+....+-.-|. -|..++.-+.+.+.+++|++++..-
T Consensus 507 retv~~l~~~~~~~e~ll~fA~l~~-----d~~~vv~~~~q~e~yeeaLevL~~~ 556 (911)
T KOG2034|consen 507 RETVYQLLASHGRQEELLQFANLIK-----DYEFVVSYWIQQENYEEALEVLLNQ 556 (911)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344445555666666655443333 3566777888899999998887653
No 415
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.17 E-value=3.9e+02 Score=26.04 Aligned_cols=85 Identities=4% Similarity=-0.072 Sum_probs=44.5
Q ss_pred HHHHhcCCHHHHHHHhhhcC-CCCHHHH-----HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 037236 616 DMYAKCGCLEQSRRVFDRLK-DKDVTSW-----NAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGL 689 (953)
Q Consensus 616 ~~y~~~g~~~~A~~~~~~~~-~~~~~~~-----~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~ 689 (953)
..+..+|++++|...++... .+.-..+ -.|.....+.|.+++|+.+++.....+. .......-..++...|+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~ 174 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGD 174 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCc
Confidence 34455666666666666443 2211111 2234455666677777766665544221 11223333456666777
Q ss_pred HHHHHHHHHHHHH
Q 037236 690 VENGLKYFSQMQK 702 (953)
Q Consensus 690 ~~~a~~~~~~m~~ 702 (953)
-++|+.-|+...+
T Consensus 175 k~~Ar~ay~kAl~ 187 (207)
T COG2976 175 KQEARAAYEKALE 187 (207)
T ss_pred hHHHHHHHHHHHH
Confidence 7777777666654
No 416
>PHA02875 ankyrin repeat protein; Provisional
Probab=38.01 E-value=5e+02 Score=28.84 Aligned_cols=17 Identities=18% Similarity=0.327 Sum_probs=8.1
Q ss_pred hhHhcCChhHHHHHHhc
Q 037236 312 MYAKCGFLSEAQILFDK 328 (953)
Q Consensus 312 ~~~~~g~~~~A~~~f~~ 328 (953)
..+..|+.+-+..+++.
T Consensus 141 ~A~~~~~~~~v~~Ll~~ 157 (413)
T PHA02875 141 LAVMMGDIKGIELLIDH 157 (413)
T ss_pred HHHHcCCHHHHHHHHhc
Confidence 33445555555544443
No 417
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.47 E-value=8.8e+02 Score=29.93 Aligned_cols=138 Identities=14% Similarity=0.112 Sum_probs=71.7
Q ss_pred hHHHHHHhccCCCCCeecHHHHHHHHHcCCCchHHHHHHHHhhhccCCCC-CChhhHHHHHHhhhcCCCchHHHHHHHHH
Q 037236 216 VEEMVKLFEVMPERNLVSWNSIICGSSENGFSCESFDLLIKMMGCEEGFI-PDVATVVTVLPVCAGEGNVDLGILVHGLA 294 (953)
Q Consensus 216 ~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 294 (953)
+++...++.+-+. |..|+--|...|+.++|++++... . .+.. -|.. ..+.-..+.+.+
T Consensus 494 vee~e~~L~k~~~-----y~~Li~LY~~kg~h~~AL~ll~~l--~-d~~~~~d~~-------------~~~~~e~ii~YL 552 (877)
T KOG2063|consen 494 VEEIETVLKKSKK-----YRELIELYATKGMHEKALQLLRDL--V-DEDSDTDSF-------------QLDGLEKIIEYL 552 (877)
T ss_pred hHHHHHHHHhccc-----HHHHHHHHHhccchHHHHHHHHHH--h-ccccccccc-------------hhhhHHHHHHHH
Confidence 4555555544433 889999999999999999999998 2 2221 1111 111122344455
Q ss_pred HHhCCCCCchHHHHHHHhhH---hcCChhHHHHHHhcCCCCCcccHH-HHHHHHHcCCChhHHHHHHHHHHhccCCCCCc
Q 037236 295 VKLGLTRELMVNNALVDMYA---KCGFLSEAQILFDKNNNKNVVSWN-TIIGAFSMAGDVCGTFDLLRKMQMKEEEMKPN 370 (953)
Q Consensus 295 ~~~g~~~~~~~~~~li~~~~---~~g~~~~A~~~f~~~~~~d~~~~~-~li~~~~~~g~~~~A~~l~~~m~~~g~~~~p~ 370 (953)
.+.+-+ +. .||-.|. -..+.+.+.++|-.-......+.+ .-+-.|......+-++..++.+.... -.++
T Consensus 553 ~~l~~~-~~----~Li~~y~~wvl~~~p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~--~~~~ 625 (877)
T KOG2063|consen 553 KKLGAE-NL----DLILEYADWVLNKNPEAGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDN--RLTS 625 (877)
T ss_pred HHhccc-ch----hHHHHHhhhhhccCchhheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhc--cccc
Confidence 554422 11 1222222 233555666666541110111111 12334566677777888888887665 4445
Q ss_pred hhhHHHHHHHh
Q 037236 371 EVTVLNVLTSC 381 (953)
Q Consensus 371 ~~t~~~ll~~~ 381 (953)
..-.+.++..+
T Consensus 626 ~~lht~ll~ly 636 (877)
T KOG2063|consen 626 TLLHTVLLKLY 636 (877)
T ss_pred hHHHHHHHHHH
Confidence 44444444443
No 418
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=37.02 E-value=1e+02 Score=24.88 Aligned_cols=46 Identities=15% Similarity=0.082 Sum_probs=34.8
Q ss_pred hcCChHHHHHHHHHHHHCCCCC-C-HHHHHHHHHHHHhcCCHHHHHHH
Q 037236 651 IHGYGKEAIELFEKMLALGHKP-D-TFTFVGILMACNHAGLVENGLKY 696 (953)
Q Consensus 651 ~~g~~~~A~~l~~~m~~~g~~P-~-~~t~~~ll~a~~~~g~~~~a~~~ 696 (953)
...+.++|+..++..++.-..| + -.++..++.+++..|++.+.+++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567888999999888864444 2 25677788899999999888776
No 419
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=37.00 E-value=53 Score=25.07 Aligned_cols=29 Identities=14% Similarity=0.329 Sum_probs=14.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037236 673 DTFTFVGILMACNHAGLVENGLKYFSQMQ 701 (953)
Q Consensus 673 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 701 (953)
|..-...++.++...|++++|.++.+.+.
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33344444555555555555555555543
No 420
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=36.73 E-value=5.3e+02 Score=28.22 Aligned_cols=58 Identities=19% Similarity=0.243 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhhhcCC------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 037236 610 VACSIIDMYAKCGCLEQSRRVFDRLKD------KDVTSWNAIIGGHGIHGYGKEAIELFEKMLA 667 (953)
Q Consensus 610 ~~~~li~~y~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 667 (953)
...-+.+.|..||+++.|.+.|.+..+ .-+..|-.+|..-.-.|++........+..+
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 445678899999999999999999652 2344566666666666777776666666555
No 421
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=36.60 E-value=1.1e+02 Score=29.78 Aligned_cols=31 Identities=16% Similarity=0.298 Sum_probs=14.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037236 671 KPDTFTFVGILMACNHAGLVENGLKYFSQMQ 701 (953)
Q Consensus 671 ~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 701 (953)
.|+..+|..++.++...|+.++|.+...++.
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444444444444444444444444443
No 422
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=36.43 E-value=82 Score=24.04 Aligned_cols=43 Identities=23% Similarity=0.244 Sum_probs=21.8
Q ss_pred HHHHHHhhhcC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 037236 625 EQSRRVFDRLK--DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLA 667 (953)
Q Consensus 625 ~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 667 (953)
++..++++.+. ..|-.-.-.+|.||.+.|++++|.++.+++..
T Consensus 7 ~~~~~~~~~lR~~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 7 EELEELIDSLRAQRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33444444333 22433444556666666666666666665544
No 423
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=36.09 E-value=5.2e+02 Score=26.91 Aligned_cols=58 Identities=17% Similarity=0.213 Sum_probs=40.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037236 642 WNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQ 701 (953)
Q Consensus 642 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 701 (953)
.+-....|...|.+.+|.++-++.+. +.| +...+-.++..+...|+--.+.+.++.+.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~lt--ldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALT--LDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 33445567778888888888887777 566 66666677777777777666666666553
No 424
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=35.52 E-value=89 Score=26.20 Aligned_cols=49 Identities=4% Similarity=0.055 Sum_probs=29.2
Q ss_pred hcCChhHHHHHHHHHhccCCCC---------cchHHHHHHHHHhcCCchHHHHHHHHH
Q 037236 754 TYGALKMGEKVAKTLLELEPDK---------AENYVLVSNIYAGSEKWDDVRMMRQRM 802 (953)
Q Consensus 754 ~~g~~~~a~~~~~~~~~l~p~~---------~~~~~~l~~~y~~~g~~~~a~~~~~~m 802 (953)
..||+..|.+.+.+.++..... ..+...++.++...|++++|....++.
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eA 67 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEA 67 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4455555555555555432211 223456778888888888888865544
No 425
>PF15161 Neuropep_like: Neuropeptide-like
Probab=35.45 E-value=15 Score=26.45 Aligned_cols=18 Identities=33% Similarity=0.787 Sum_probs=12.7
Q ss_pred eccccCCcchhhHHHHhhh
Q 037236 900 KNLRICVDCHNAAKLISKV 918 (953)
Q Consensus 900 ~nlr~c~~ch~~~~~~s~~ 918 (953)
.--|-|.|||.+- |+.+.
T Consensus 11 aesRPCVDCHAFe-fmqRA 28 (65)
T PF15161_consen 11 AESRPCVDCHAFE-FMQRA 28 (65)
T ss_pred CCCCCchhhHHHH-HHHHH
Confidence 4568899999765 65543
No 426
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=35.42 E-value=2.8e+02 Score=30.31 Aligned_cols=31 Identities=10% Similarity=0.102 Sum_probs=23.6
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037236 671 KP-DTFTFVGILMACNHAGLVENGLKYFSQMQ 701 (953)
Q Consensus 671 ~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 701 (953)
.| -..|+..+...|.+.|+.+.|.++.++..
T Consensus 36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRAL 67 (360)
T PF04910_consen 36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERAL 67 (360)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45 45677778888888888888888777764
No 427
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=34.65 E-value=4.9e+02 Score=26.14 Aligned_cols=47 Identities=15% Similarity=0.241 Sum_probs=35.4
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 037236 627 SRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDT 674 (953)
Q Consensus 627 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~ 674 (953)
+..+|.-..+|.+.....|+..|. .+++++|.+.+.++-+.|+.|..
T Consensus 227 ~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~D 273 (333)
T KOG0991|consen 227 QENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPED 273 (333)
T ss_pred hhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHH
Confidence 455666666777777777777554 46799999999999999998843
No 428
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=34.25 E-value=4.6e+02 Score=28.69 Aligned_cols=29 Identities=10% Similarity=-0.345 Sum_probs=19.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 037236 646 IGGHGIHGYGKEAIELFEKMLALGHKPDT 674 (953)
Q Consensus 646 i~~~~~~g~~~~A~~l~~~m~~~g~~P~~ 674 (953)
+..+.+.+++..|.++|+++......|..
T Consensus 137 ~r~l~n~~dy~aA~~~~~~L~~r~l~~~~ 165 (380)
T TIGR02710 137 ARRAINAFDYLFAHARLETLLRRLLSAVN 165 (380)
T ss_pred HHHHHHhcChHHHHHHHHHHHhcccChhh
Confidence 33455677788888888888776544443
No 429
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=33.66 E-value=5.7e+02 Score=26.64 Aligned_cols=80 Identities=13% Similarity=-0.049 Sum_probs=34.5
Q ss_pred cchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHh----cCCHHHHHHHhhhcCCC-CHHHHHHHHHHHHh----cCChHH
Q 037236 587 SALRLGKETHCYALKAILTNDAFVACSIIDMYAK----CGCLEQSRRVFDRLKDK-DVTSWNAIIGGHGI----HGYGKE 657 (953)
Q Consensus 587 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~ 657 (953)
+....+...+......+ +......+..+|.. ..+..+|...|...... .......|...|.. ..+..+
T Consensus 55 ~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~ 131 (292)
T COG0790 55 PDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVK 131 (292)
T ss_pred ccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHH
Confidence 44455555554444422 22333334444432 23345555555544432 22233333333332 224555
Q ss_pred HHHHHHHHHHCC
Q 037236 658 AIELFEKMLALG 669 (953)
Q Consensus 658 A~~l~~~m~~~g 669 (953)
|...|++..+.|
T Consensus 132 A~~~~~~Aa~~g 143 (292)
T COG0790 132 ALKYYEKAAKLG 143 (292)
T ss_pred HHHHHHHHHHcC
Confidence 555555555554
No 430
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=33.19 E-value=7.2e+02 Score=27.68 Aligned_cols=46 Identities=4% Similarity=-0.164 Sum_probs=23.7
Q ss_pred CCchhhhHHHHHHHhcCChhhHHHHhhcCCCCCchhHHHHHHHHhc
Q 037236 96 NDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTK 141 (953)
Q Consensus 96 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~ 141 (953)
++..+......++...|.......+..-+..+++..-.+.+.++..
T Consensus 98 ~~~~vr~aaa~ALg~i~~~~a~~~L~~~L~~~~p~vR~aal~al~~ 143 (410)
T TIGR02270 98 GPEGLCAGIQAALGWLGGRQAEPWLEPLLAASEPPGRAIGLAALGA 143 (410)
T ss_pred CCHHHHHHHHHHHhcCCchHHHHHHHHHhcCCChHHHHHHHHHHHh
Confidence 3444555566666666655555555555555554444344444443
No 431
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=33.03 E-value=5e+02 Score=25.81 Aligned_cols=73 Identities=15% Similarity=0.214 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-C----CChhHHHHHH
Q 037236 676 TFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE-E----ADAGIWSSLL 749 (953)
Q Consensus 676 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~----~~~~~~~~ll 749 (953)
|...-++.+.+.+.+++|+...+.-++ -+|. ...-..++++|+-.|++++|..-++-... . +....|..++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVk---akPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~li 79 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVK---AKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLI 79 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHh---cCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHH
Confidence 445567778889999999998887766 3455 45556689999999999999877664432 2 4456777777
Q ss_pred HH
Q 037236 750 RS 751 (953)
Q Consensus 750 ~~ 751 (953)
.+
T Consensus 80 r~ 81 (273)
T COG4455 80 RC 81 (273)
T ss_pred HH
Confidence 54
No 432
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=32.87 E-value=5.1e+02 Score=25.87 Aligned_cols=94 Identities=21% Similarity=0.212 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHH
Q 037236 641 SWNAIIGGHGIHGYGKEAIELFEKMLALGHKP---DTFTF--VGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYAC 715 (953)
Q Consensus 641 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P---~~~t~--~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 715 (953)
-.|.||--|.-+..+.+|.+.|.. +.|+.| |..++ ..-+......|++++|++...+... .-+.-+.+.+--
T Consensus 28 d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~P-eiLd~n~~l~F~ 104 (228)
T KOG2659|consen 28 DLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNP-EILDTNRELFFH 104 (228)
T ss_pred hHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhCh-HHHccchhHHHH
Confidence 345555555555555555555533 334444 22222 2334455677888888777665521 112222212221
Q ss_pred HH----HHHhhcCCHHHHHHHHHhCC
Q 037236 716 VV----DMLGRAGKLDDAFKLIIEMP 737 (953)
Q Consensus 716 lv----~~l~~~g~~~eA~~~~~~~~ 737 (953)
|. -=+.|.|+.++|+++.+.-.
T Consensus 105 Lq~q~lIEliR~~~~eeal~F~q~~L 130 (228)
T KOG2659|consen 105 LQQLHLIELIREGKTEEALEFAQTKL 130 (228)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHc
Confidence 21 12578888999999887643
No 433
>PF13934 ELYS: Nuclear pore complex assembly
Probab=32.75 E-value=4.8e+02 Score=26.20 Aligned_cols=111 Identities=10% Similarity=0.088 Sum_probs=60.2
Q ss_pred cCCHHHHHHHhhhcC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037236 621 CGCLEQSRRVFDRLK-DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQ 699 (953)
Q Consensus 621 ~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~ 699 (953)
.+++++|.+.+..-. .++-.. -++.++...|+.+.|+.+++-+.-... +......++.+ ...+.+.||..+-+.
T Consensus 91 ~~~~~~A~~~L~~ps~~~~~~~--~Il~~L~~~~~~~lAL~y~~~~~p~l~--s~~~~~~~~~~-La~~~v~EAf~~~R~ 165 (226)
T PF13934_consen 91 HGDFEEALELLSHPSLIPWFPD--KILQALLRRGDPKLALRYLRAVGPPLS--SPEALTLYFVA-LANGLVTEAFSFQRS 165 (226)
T ss_pred hHhHHHHHHHhCCCCCCcccHH--HHHHHHHHCCChhHHHHHHHhcCCCCC--CHHHHHHHHHH-HHcCCHHHHHHHHHh
Confidence 366777777775432 222222 367777778888888888876432111 22333333334 455888888887655
Q ss_pred HHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 037236 700 MQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPEEA 740 (953)
Q Consensus 700 m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~ 740 (953)
..+ .-....+..++..+.....-....+.+-.+|..+
T Consensus 166 ~~~----~~~~~l~e~l~~~~~~~~~~~~~~~~Ll~LPl~~ 202 (226)
T PF13934_consen 166 YPD----ELRRRLFEQLLEHCLEECARSGRLDELLSLPLDE 202 (226)
T ss_pred Cch----hhhHHHHHHHHHHHHHHhhhhhHHHHHHhCCCCh
Confidence 422 1113456666666654432233334444455433
No 434
>PRK09169 hypothetical protein; Validated
Probab=32.63 E-value=1.5e+03 Score=31.24 Aligned_cols=396 Identities=9% Similarity=-0.023 Sum_probs=211.6
Q ss_pred CchhhHHHHHHHhccccchHHHHHHHHHHH----H---cCCCCchhHHHHHHHHHHhcCCcccHH--------HHhccCC
Q 037236 369 PNEVTVLNVLTSCSEKSELLSLKELHGYSL----R---HGFDNDELVANAFVVAYAKCGSEISAE--------NVFHGMD 433 (953)
Q Consensus 369 p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~----~---~g~~~~~~~~~~li~~y~~~g~~~~A~--------~~f~~~~ 433 (953)
-+......+|+++++-.+-+...+.-..+- + .....+..-....+++++|..+-+.+. ++.....
T Consensus 244 l~~q~va~~LNAlSKWp~~~~c~~aa~~lA~rla~~~~lr~~~~~Q~vAN~LNALSKwp~~~~cr~aa~~LA~rL~~~~~ 323 (2316)
T PRK09169 244 LRAQEVALLLNALSKWPDDEACRQAAEALAARLAREPGLRLALDPQGVANALNALSKWPDTEACRQAAEALAERLAQERG 323 (2316)
T ss_pred cCHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhChh
Confidence 345567777888887766554433322221 1 012345566666777777776544322 2222111
Q ss_pred ---CCChhhHHHHHHHHHhcCChHHH----HHHHHHhhhCC---CCCCcchHHHHHHhhccccccchhhH----HHHHHH
Q 037236 434 ---SRTVSSWNALICGYAQNGDHLKA----LDYFLQMTHSD---LEPDLFSIGSLILACTHLKSLHRGKE----IHGFVI 499 (953)
Q Consensus 434 ---~~~~~~~~~li~~~~~~g~~~~A----~~~~~~m~~~g---~~p~~~t~~~ll~~~~~~~~~~~a~~----i~~~~~ 499 (953)
.-+..-....+.++.+-.+.+.+ ..+-..+...- -..+..-+...+.++++..+-+.... +-..+.
T Consensus 324 l~~~~~aQ~vAN~LNALSKWp~~~~c~~Aa~~LA~rL~~~~~l~~~~npQelANaLnALSKwp~~~~cr~AA~aLA~rL~ 403 (2316)
T PRK09169 324 LLQAMNAQAVANALNALSKWPDEEACRAAAEALAARLARDAGLRRALNAQELANALNALSKWPDEEACRAAAEALAARLA 403 (2316)
T ss_pred hhhhCCHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhChhhhhhCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 11333344556666665554432 22233332211 23455667788888888765543322 222222
Q ss_pred Hh-CC--CCchhhHhhHHHHHHhcCChhHHHHHHHhc----cc-------CCcccHHHHHHHHHhcCChh----HHHHHH
Q 037236 500 RN-GL--EGDSFTGISLLSLYMHCEKSSSARVLFDEM----ED-------KSLVSWNTMIAGYSQNKLPV----EAIVLF 561 (953)
Q Consensus 500 ~~-g~--~~~~~~~~~li~~y~~~g~~~~A~~~f~~~----~~-------~~~~~~~~li~~~~~~g~~~----~A~~~~ 561 (953)
.. +. ..|..-....+.+++|-+.-+.+......+ .. -|..-....+.++.+-++.+ -+..+.
T Consensus 404 ~~~~l~~~fnaQ~vANaLnALsKWp~~~~c~~aa~aLA~rl~~~a~lr~~fn~QeLaN~LnALsKWp~~~~c~~aa~~LA 483 (2316)
T PRK09169 404 RDAGLRAALNAQGVANALNALSKWPGAEACRQAALALAARLAADARLRNALSAQELANALNALSKWPDEAACRRAAEALA 483 (2316)
T ss_pred hchhhhhhcChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhchhhhhhCCHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 21 11 234445555667777766555443333222 11 13444556667777665533 233344
Q ss_pred HHHHHc---CCCCChhhHHHHHHHhccccchHHHHHHHHHH----HH---cCCCCCccHHHHHHHHHHhcCCHHH----H
Q 037236 562 RRMFSI---GVQPCEISIVSILSACSQLSALRLGKETHCYA----LK---AILTNDAFVACSIIDMYAKCGCLEQ----S 627 (953)
Q Consensus 562 ~~m~~~---g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~----~~---~~~~~~~~~~~~li~~y~~~g~~~~----A 627 (953)
.++... .-..+..-+..++.++++.+..+.....-..+ .. .--..+..-....+.+++|-++.+. |
T Consensus 484 ~rl~~~~~l~~af~~Q~lAN~LnALsKwp~~~~c~~aA~aLA~rla~~~~l~~afnpQ~lAN~LnALSKWP~~~~cr~AA 563 (2316)
T PRK09169 484 ARLAGDAELRQALDAQGLANALNALSKWPDSDACRAAAEALADRLAQDPALLQAMDAQGLANTLNALSKWPEEPDCRAAA 563 (2316)
T ss_pred HHHhcChhhhhhcChHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHcCCCchHHHHHH
Confidence 444221 12345677889999999988776654443322 21 1122356666777888888776322 3
Q ss_pred HHHhhhcC-------CCCHHHHHHHHHHHHhcCCh----HHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCCHHHH
Q 037236 628 RRVFDRLK-------DKDVTSWNAIIGGHGIHGYG----KEAIELFEKMLALGH---KPDTFTFVGILMACNHAGLVENG 693 (953)
Q Consensus 628 ~~~~~~~~-------~~~~~~~~~li~~~~~~g~~----~~A~~l~~~m~~~g~---~P~~~t~~~ll~a~~~~g~~~~a 693 (953)
..++..+. .-|...+...+.++.+-++. +.+..+...+....- .-|..-+.++++++++-...+..
T Consensus 564 ~aLA~~la~~~~l~~~~naQ~LAN~LnALSKWP~~~acr~Aa~aLA~rla~~~~~~~afn~Q~lAN~LnALSKWP~~~~c 643 (2316)
T PRK09169 564 EALAARLARRPDLRSALNAQGLANLLNALSKWPDEDACRAAAEALAGRLARDAGLLDAFNAQDLANLLNGLSKWPDEDDC 643 (2316)
T ss_pred HHHHHHHhcChhhhhccCHHHHHHHHHHHhhCCCchhHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHhcCCCchhH
Confidence 33444433 23666778888899987764 334445555444211 12667788899999998887765
Q ss_pred HHHHHHHHHhcCC------CCChhHHHHHHHHHhhcCCHHHHHHH----HHhCCC------CCChhHHHHHHHHHHhcCC
Q 037236 694 LKYFSQMQKLHAV------KPKLEHYACVVDMLGRAGKLDDAFKL----IIEMPE------EADAGIWSSLLRSCRTYGA 757 (953)
Q Consensus 694 ~~~~~~m~~~~~~------~p~~~~~~~lv~~l~~~g~~~eA~~~----~~~~~~------~~~~~~~~~ll~~~~~~g~ 757 (953)
......+.....- .-+..+...++.++.+-.+.+.+.+. ..++.. .-|+.-..+.+++..+--+
T Consensus 644 r~Aa~aLA~~L~~~~~l~~af~aQ~LaN~LnALSKWp~~~~c~~Aa~aLA~rl~~~~~~~~~f~aq~lAn~LnAlsKwp~ 723 (2316)
T PRK09169 644 RQAAEALAARLLRDAGLPRAFDAQGLANALNALSKWPDEAACRAAALALAERLAREAGLRQAFDAQGVANALNALSKWPE 723 (2316)
T ss_pred HHHHHHHHHHHhhcchhHHhcCcHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhcchhhhhhcCHHHHHHHHHHHHhccC
Confidence 5544444322111 23467788888999998876653333 223221 2355666667777666554
Q ss_pred hhHHHHH
Q 037236 758 LKMGEKV 764 (953)
Q Consensus 758 ~~~a~~~ 764 (953)
-+..+.+
T Consensus 724 ~~acr~A 730 (2316)
T PRK09169 724 EEACRAA 730 (2316)
T ss_pred ccHHHHH
Confidence 3344333
No 435
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=32.49 E-value=6e+02 Score=26.52 Aligned_cols=89 Identities=13% Similarity=0.114 Sum_probs=45.7
Q ss_pred CCCChhhHHHHHHhhhc-CC-CchHHHHHHHHHHHh-CCCCCchHHHHHHHhhHhcCChhHHHHHHhcC-----CCCCcc
Q 037236 264 FIPDVATVVTVLPVCAG-EG-NVDLGILVHGLAVKL-GLTRELMVNNALVDMYAKCGFLSEAQILFDKN-----NNKNVV 335 (953)
Q Consensus 264 ~~p~~~t~~~ll~~~~~-~~-~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~-----~~~d~~ 335 (953)
+--|......+|+.... .+ .+..-.++.+.+... |-.++..+...++..+++.+++..-.++++.. +..|..
T Consensus 160 Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~r 239 (292)
T PF13929_consen 160 IIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPR 239 (292)
T ss_pred eeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCc
Confidence 44444444444444443 11 222223333333322 23455555566666666666666666666542 234666
Q ss_pred cHHHHHHHHHcCCChhH
Q 037236 336 SWNTIIGAFSMAGDVCG 352 (953)
Q Consensus 336 ~~~~li~~~~~~g~~~~ 352 (953)
.|..+|......|+..-
T Consensus 240 pW~~FI~li~~sgD~~~ 256 (292)
T PF13929_consen 240 PWAEFIKLIVESGDQEV 256 (292)
T ss_pred hHHHHHHHHHHcCCHHH
Confidence 67777776666666543
No 436
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=32.34 E-value=1.2e+02 Score=27.40 Aligned_cols=70 Identities=20% Similarity=0.360 Sum_probs=48.5
Q ss_pred EEEeCCEEEEEeeCC-CCCccHHHHHHHHHHHHHHHHhcCcccCCCccccccchHHHHhhhhhhhHHHHHHHcccCCCCC
Q 037236 815 WIELGGNIHSFVVGD-NMHPEWEEIRGMWGRLEEQISKIGYKPYTEAVLHELEEEEKVNILRGHSEKLAISFGLLKTTKD 893 (953)
Q Consensus 815 ~i~~~~~~~~f~~~d-~~hp~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~la~~~~~~~~~~~ 893 (953)
|+.-.+....|..|| ..||+...+--+|++|.+++..... ..+--+.+ ....+|..||+...|
T Consensus 30 ~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v----~~akVDiD----------~~~~LA~~fgV~siP-- 93 (132)
T PRK11509 30 WLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTW----QVAIADLE----------QSEAIGDRFGVFRFP-- 93 (132)
T ss_pred HHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCce----EEEEEECC----------CCHHHHHHcCCccCC--
Confidence 444455667899999 7789999999999999877631111 12222222 357789999999988
Q ss_pred CcEEEEec
Q 037236 894 LTLRVCKN 901 (953)
Q Consensus 894 ~~~~~~~n 901 (953)
++-+.||
T Consensus 94 -TLl~Fkd 100 (132)
T PRK11509 94 -ATLVFTG 100 (132)
T ss_pred -EEEEEEC
Confidence 4556666
No 437
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=31.74 E-value=3e+02 Score=28.32 Aligned_cols=56 Identities=18% Similarity=0.087 Sum_probs=45.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHH
Q 037236 746 SSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQR 801 (953)
Q Consensus 746 ~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 801 (953)
.++=.++...++++.|.++.++++.++|+++.-..--|-+|++.|-..-|..-...
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~ 240 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSY 240 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHH
Confidence 34444567788899999999999999999998888888899999988888876655
No 438
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=31.72 E-value=1.9e+02 Score=25.07 Aligned_cols=38 Identities=16% Similarity=0.271 Sum_probs=29.1
Q ss_pred ChHHHHHHhccCCCCCeecHHHHHHHHHcCCCchHHHHHHHHh
Q 037236 215 FVEEMVKLFEVMPERNLVSWNSIICGSSENGFSCESFDLLIKM 257 (953)
Q Consensus 215 ~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 257 (953)
++++..+.+.+- .-|..++.-|-.+|..++|++++.+.
T Consensus 28 ~~~~~e~~L~~~-----~~~~eL~~lY~~kg~h~~AL~ll~~l 65 (108)
T PF10366_consen 28 DLEEVEEVLKEH-----GKYQELVDLYQGKGLHRKALELLKKL 65 (108)
T ss_pred CHHHHHHHHHHc-----CCHHHHHHHHHccCccHHHHHHHHHH
Confidence 345555555332 24899999999999999999999998
No 439
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=31.29 E-value=1.5e+02 Score=28.87 Aligned_cols=32 Identities=13% Similarity=0.096 Sum_probs=17.4
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 037236 636 DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLA 667 (953)
Q Consensus 636 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 667 (953)
.|++..+..++..+...|+.++|.+..+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555555555555555555555555555555
No 440
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=31.19 E-value=59 Score=29.17 Aligned_cols=32 Identities=22% Similarity=0.361 Sum_probs=23.8
Q ss_pred hcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHh
Q 037236 550 QNKLPVEAIVLFRRMFSIGVQPCEISIVSILSAC 583 (953)
Q Consensus 550 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 583 (953)
..|.-.+|..+|++|++.|-.||. |..||.++
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 346667889999999999988874 55666544
No 441
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=30.80 E-value=2.4e+02 Score=24.47 Aligned_cols=28 Identities=25% Similarity=0.431 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHhhh
Q 037236 438 SSWNALICGYAQNGDHLKALDYFLQMTH 465 (953)
Q Consensus 438 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 465 (953)
.-|..++.-|...|..++|++++.+...
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3589999999999999999999999877
No 442
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=30.49 E-value=6.2e+02 Score=26.08 Aligned_cols=83 Identities=18% Similarity=0.209 Sum_probs=46.1
Q ss_pred CCccHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 037236 606 NDAFVACSIIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACN 685 (953)
Q Consensus 606 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~ 685 (953)
-++.....+...|.+.|++.+|+..|-.-..++...+-.++.-....|...++ |...-.+++ -|.
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaVL-~yL 152 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARAVL-QYL 152 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHHHH-HHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHHHH-HHH
Confidence 36778888899999999999999888665444443332233222222322222 222222233 345
Q ss_pred hcCCHHHHHHHHHHHHHh
Q 037236 686 HAGLVENGLKYFSQMQKL 703 (953)
Q Consensus 686 ~~g~~~~a~~~~~~m~~~ 703 (953)
-.+++..|...++...+.
T Consensus 153 ~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HTTBHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 567888888877777654
No 443
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=30.34 E-value=8.8e+02 Score=27.83 Aligned_cols=158 Identities=16% Similarity=0.136 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 037236 709 KLEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAG 788 (953)
Q Consensus 709 ~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 788 (953)
++..-.||-+-+....++.-|.++.++.. -....+|.+..-+|.+.+++..|+.-+++++++.-+|..-.+.=.+-...
T Consensus 555 d~~asecLRdqLie~ErYqlaV~mckKc~-iD~f~aW~AWGlA~Lk~e~~aaAR~KFkqafklkgedipdvi~diin~ie 633 (1141)
T KOG1811|consen 555 DPAASECLRDQLIEAERYQLAVEMCKKCG-IDTFGAWHAWGLACLKAENLAAAREKFKQAFKLKGEDIPDVIFDIINLIE 633 (1141)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCcccHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCccchHHHHHHHhhc
Q ss_pred cCCchHHHHHHHHHHHCCCccCCceeEEEeCCEEEEEeeCCCCCccHHHHHHHHHHHHHHHHhc----CcccCCCccccc
Q 037236 789 SEKWDDVRMMRQRMKERGLQKEAGCSWIELGGNIHSFVVGDNMHPEWEEIRGMWGRLEEQISKI----GYKPYTEAVLHE 864 (953)
Q Consensus 789 ~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~~~~~~~----~~~~~~~~~~~~ 864 (953)
-|-.-++..++. |-+.-.++.|-+-...+ +...-...|.++...++.. ...|........
T Consensus 634 Ggpp~dVq~Vre-m~dhlak~aptilddSL---------------qaD~Y~~~Lh~~eaf~Rser~r~ale~E~nk~m~g 697 (1141)
T KOG1811|consen 634 GGPPRDVQDVRE-MLDHLAKPAPTILDDSL---------------QADDYFATLHELEAFLRSERLRLALEPEGNKIMNG 697 (1141)
T ss_pred CCCcchHHHHHH-HHHHhccCCcccccccc---------------cchhHHHHHHhhhhhhhhhhhhhhhccccCcCCCC
Q ss_pred cchHHHHhhh---hhhhHHHHH
Q 037236 865 LEEEEKVNIL---RGHSEKLAI 883 (953)
Q Consensus 865 ~~~~~~~~~~---~~~~e~la~ 883 (953)
.+=++....+ ...||.+|+
T Consensus 698 sdfed~prs~~d~~~YSec~~~ 719 (1141)
T KOG1811|consen 698 SDFEDCPRSLFDLHNYSECLAI 719 (1141)
T ss_pred cchhhCcHhhhhhhhhHHHHHH
No 444
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=30.15 E-value=2.4e+02 Score=23.29 Aligned_cols=39 Identities=10% Similarity=0.072 Sum_probs=27.1
Q ss_pred hcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCChHHHH
Q 037236 620 KCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAI 659 (953)
Q Consensus 620 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 659 (953)
+.|+.+.|.+++..+. +.+..+...+.++...|+.+-|.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 4577777777777777 66677777777777777655543
No 445
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=29.22 E-value=4.6e+02 Score=24.18 Aligned_cols=50 Identities=12% Similarity=0.101 Sum_probs=30.2
Q ss_pred CHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 037236 638 DVTSWNAIIGGHGIHGY-GKEAIELFEKMLALGHKPDTFTFVGILMACNHA 687 (953)
Q Consensus 638 ~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~ 687 (953)
+-.+|+.++.+..+..- ---+..+|.-|.+.+.+++..-|..++.+|.+.
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 44466666666655444 334456666666666666666677777666654
No 446
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=29.03 E-value=6.5e+02 Score=25.89 Aligned_cols=86 Identities=16% Similarity=0.159 Sum_probs=49.3
Q ss_pred HHHHhhccCChHHHHHHhccCCCCCeecHHHHHHHHHcCCCchHHHHHHHHhhhcc-CCCCC-----ChhhHHHHHHhhh
Q 037236 206 LIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGSSENGFSCESFDLLIKMMGCE-EGFIP-----DVATVVTVLPVCA 279 (953)
Q Consensus 206 li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~-~g~~p-----~~~t~~~ll~~~~ 279 (953)
++-.++|.-++..=..+|+....| ..+..-+.+.|+.+.|-.++--+ .. .+... +...-.-++....
T Consensus 159 Ivv~C~RKtE~~~W~~LF~~lg~P-----~dLf~~cl~~~~l~tAa~yLlVl--~~~e~~~~~~~~~~~~~al~LL~~a~ 231 (258)
T PF07064_consen 159 IVVNCARKTEVRYWPYLFDYLGSP-----RDLFEECLENGNLKTAASYLLVL--QNLEGSSVVKDEESRQCALRLLVMAL 231 (258)
T ss_pred HHHHHHHhhHHHHHHHHHHhcCCH-----HHHHHHHHHcCcHHHHHHHHHHH--HhcCCcchhhhHHHHHHHHHHHHHHH
Confidence 333444444444445566655422 24666677778877777666655 22 22222 3334445666677
Q ss_pred cCCCchHHHHHHHHHHHhC
Q 037236 280 GEGNVDLGILVHGLAVKLG 298 (953)
Q Consensus 280 ~~~~~~~a~~~~~~~~~~g 298 (953)
..++++.+.++.+.+...+
T Consensus 232 ~~~~w~Lc~eL~RFL~~ld 250 (258)
T PF07064_consen 232 ESGDWDLCFELVRFLKALD 250 (258)
T ss_pred hcccHHHHHHHHHHHHHhC
Confidence 7777777777777666544
No 447
>PF08225 Antimicrobial19: Pseudin antimicrobial peptide; InterPro: IPR013156 Pseudins are a subfamily of the FSAP family (Frog Secreted Active Peptides) extracted from the skin of the paradoxical frog Pseudis paradoxa (Paradoxical frog). The pseudins belong to the class of cationic, amphipathic-helical antimicrobial peptides [].; GO: 0006952 defense response
Probab=28.78 E-value=33 Score=19.22 Aligned_cols=12 Identities=33% Similarity=0.451 Sum_probs=8.8
Q ss_pred CcchhhHHHHhh
Q 037236 906 VDCHNAAKLISK 917 (953)
Q Consensus 906 ~~ch~~~~~~s~ 917 (953)
...|+++|+||.
T Consensus 10 qglhe~ikli~n 21 (23)
T PF08225_consen 10 QGLHEVIKLINN 21 (23)
T ss_pred HHHHHHHHHHhc
Confidence 457888888874
No 448
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=28.74 E-value=7.1e+02 Score=26.24 Aligned_cols=163 Identities=12% Similarity=0.121 Sum_probs=87.8
Q ss_pred HHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 037236 596 HCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK-DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDT 674 (953)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~ 674 (953)
++.+..+++-++.....+-++.+.+.+.++-+..++.... ..|.. +++. . +-.+.+.-++++.+. +.|
T Consensus 23 lEFl~~r~iy~~keLle~k~~ll~~TNMiDy~md~~k~l~~sed~p--~a~~----e--kr~~Vla~lkeLe~e-v~p-- 91 (432)
T KOG2758|consen 23 LEFLSLRQIYDEKELLEAKLQLLNKTNMIDYVMDTYKNLHTSEDMP--NALV----E--KRTEVLAELKELEEE-VAP-- 91 (432)
T ss_pred HHHhhhhccCCHHHHHHHHHHHHcccchHHHHHHHHhcccccccch--HHHH----H--HHHHHHHHHHHHHHH-HHH--
Confidence 3444444455555666666777777888888888887763 11111 1111 1 112222333333331 111
Q ss_pred HHHHHHH---HHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHH---HhCCCCCChhHHHH
Q 037236 675 FTFVGIL---MACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLI---IEMPEEADAGIWSS 747 (953)
Q Consensus 675 ~t~~~ll---~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~---~~~~~~~~~~~~~~ 747 (953)
...++ ..-.....-.+....++.+.+.+++.|+ +++.--.......+|++..|-+.+ ......||....++
T Consensus 92 --iv~~le~Pd~~~~~~~~k~~~~~l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsa 169 (432)
T KOG2758|consen 92 --IVKVLENPDLIAALRSDKDRVQNLQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSA 169 (432)
T ss_pred --HHHHHcCHHHHHHHHhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHH
Confidence 11111 1111222233447788888889999998 666666777788899999998764 34444566544333
Q ss_pred HHHHH---HhcCChhHHHHHHHHHhcc
Q 037236 748 LLRSC---RTYGALKMGEKVAKTLLEL 771 (953)
Q Consensus 748 ll~~~---~~~g~~~~a~~~~~~~~~l 771 (953)
+-+-. ....+.+.|.+-+-++-+.
T Consensus 170 lwGKlASEIL~qnWd~A~edL~rLre~ 196 (432)
T KOG2758|consen 170 LWGKLASEILTQNWDGALEDLTRLREY 196 (432)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 33322 2234677777666666553
No 449
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=28.69 E-value=8.1e+02 Score=26.86 Aligned_cols=94 Identities=11% Similarity=0.063 Sum_probs=51.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC--ChhHHHH----HHH
Q 037236 681 LMACNHAGLVENGLKYFSQMQKLHAVKPK----LEHYACVVDMLGRAGKLDDAFKLIIEMPEEA--DAGIWSS----LLR 750 (953)
Q Consensus 681 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~--~~~~~~~----ll~ 750 (953)
-.++...|+..+-..++....+...+.-| ....++|++.|...+.++.|.+++.+.+.+. +..-|.- ++.
T Consensus 176 ~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~Gr 255 (493)
T KOG2581|consen 176 YLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGR 255 (493)
T ss_pred HHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhh
Confidence 33455666666666655555444333333 3335666777777777777777777765321 1112211 122
Q ss_pred HHHhcCChhHHHHHHHHHhccCCC
Q 037236 751 SCRTYGALKMGEKVAKTLLELEPD 774 (953)
Q Consensus 751 ~~~~~g~~~~a~~~~~~~~~l~p~ 774 (953)
.-..++++..|.+.+-.++..-|.
T Consensus 256 IkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 256 IKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHhhcchhHHHHHHHHHHHhCcc
Confidence 234566777777776666666664
No 450
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=28.30 E-value=6.4e+02 Score=25.55 Aligned_cols=58 Identities=10% Similarity=0.109 Sum_probs=32.8
Q ss_pred HHHHhhcCCHHHHHHHHHhCCC-CC-ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 037236 717 VDMLGRAGKLDDAFKLIIEMPE-EA-DAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPD 774 (953)
Q Consensus 717 v~~l~~~g~~~eA~~~~~~~~~-~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~ 774 (953)
-.++...|++-++++-..+... .| +...+---..+-..-=|.++|+.-+.++++++|.
T Consensus 237 ~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 237 CQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred HHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 3444555555555555554432 12 2333333333333333778999999999999994
No 451
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=28.30 E-value=1.4e+02 Score=27.31 Aligned_cols=70 Identities=13% Similarity=0.089 Sum_probs=44.9
Q ss_pred HHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHH
Q 037236 727 DDAFKLIIEMPEEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMR 799 (953)
Q Consensus 727 ~eA~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 799 (953)
+.|.++++-|. .....-.........|++.-|..+.+.++..+|+|..+-.+.+++|.+.|.-.+....|
T Consensus 58 ~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~~~~~R 127 (141)
T PF14863_consen 58 EEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSENANWR 127 (141)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-SSHHHH
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhccCHHHH
Confidence 44555555543 11222223334567899999999999999999999999999999988777655544433
No 452
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=27.84 E-value=2.5e+02 Score=28.92 Aligned_cols=86 Identities=12% Similarity=0.079 Sum_probs=37.4
Q ss_pred HHHHhcCCChhhHHHHHHHhHhc-CCCCCCcccHHHHHHHhhcCCChhhHhHHHHHHHHhCCCCChhHHHHHHHHhhc--
Q 037236 136 VSGFTKNELYPDVLSIFVELLSD-TELKPDNFTFPCVIKACGGIADVSFGSGVHGMAAKMGLIGDVFVSNALIAMYGK-- 212 (953)
Q Consensus 136 i~~~~~~g~~~~a~~~~~~m~~~-~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-- 212 (953)
|++++.-+++.+++...-+-.+. +.++|..--.- |-.|.+.+.+..+.++-....+.--+-+..-|.++...|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLC--ILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELC--ILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHH--HHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 45555555565555443332220 12222211111 11234555555555544444443322233335555555433
Q ss_pred ---cCChHHHHHHh
Q 037236 213 ---CAFVEEMVKLF 223 (953)
Q Consensus 213 ---~g~~~~A~~~f 223 (953)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 36666666655
No 453
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=27.76 E-value=1.6e+02 Score=32.71 Aligned_cols=13 Identities=23% Similarity=-0.097 Sum_probs=9.0
Q ss_pred ccCCcCCcchhhh
Q 037236 939 CSCGDIGSCWQMI 951 (953)
Q Consensus 939 csc~~~~~~~~~~ 951 (953)
-+|.--|||-|+.
T Consensus 359 ~~~~~lws~pq~~ 371 (476)
T KOG0376|consen 359 LMCELLWSDPQPA 371 (476)
T ss_pred cccccccCCCccc
Confidence 3566788887764
No 454
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=27.71 E-value=2.7e+02 Score=23.02 Aligned_cols=38 Identities=13% Similarity=0.018 Sum_probs=29.0
Q ss_pred hcCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChhHH
Q 037236 315 KCGFLSEAQILFDKNNNKNVVSWNTIIGAFSMAGDVCGT 353 (953)
Q Consensus 315 ~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A 353 (953)
..|+.+.|+++++.++ +..-.+..++.++-..|.-+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 5578888888888888 7777888888888777765544
No 455
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=27.46 E-value=1.1e+02 Score=31.90 Aligned_cols=42 Identities=21% Similarity=0.298 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 037236 640 TSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGIL 681 (953)
Q Consensus 640 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll 681 (953)
.-||..|..-.+.||+++|+.+++|..+.|+.--..||..-+
T Consensus 258 ~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 258 SYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 356788999999999999999999999998776666665443
No 456
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=27.26 E-value=3e+02 Score=22.95 Aligned_cols=53 Identities=11% Similarity=0.224 Sum_probs=27.5
Q ss_pred HhcCChHHHHHHHHHHHHCC---CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037236 650 GIHGYGKEAIELFEKMLALG---HKPD-----TFTFVGILMACNHAGLVENGLKYFSQMQK 702 (953)
Q Consensus 650 ~~~g~~~~A~~l~~~m~~~g---~~P~-----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 702 (953)
.+.|++.+|++.+.+..+.. ..+. ......+.......|.+++|...+++.++
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 35566666655555544321 1111 12233344455566777777777766654
No 457
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=27.25 E-value=7e+02 Score=25.68 Aligned_cols=159 Identities=13% Similarity=0.043 Sum_probs=76.6
Q ss_pred hcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH----HHCCCCCCHHHHHHHHHHHHhcCCHH-HHH
Q 037236 620 KCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKM----LALGHKPDTFTFVGILMACNHAGLVE-NGL 694 (953)
Q Consensus 620 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m----~~~g~~P~~~t~~~ll~a~~~~g~~~-~a~ 694 (953)
+++++++|.+++..- ...+.++|+..-|-++-.-| .+.+..+|......++..+...+.-+ +-.
T Consensus 2 ~~kky~eAidLL~~G-----------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG-----------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHHH-----------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 456777777765431 23345556555444433333 23355555555445554444332211 122
Q ss_pred HHHHHHHH--hcCCC--CChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 037236 695 KYFSQMQK--LHAVK--PKLEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSCRTYGALKMGEKVAKTLLE 770 (953)
Q Consensus 695 ~~~~~m~~--~~~~~--p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 770 (953)
++.+.+++ +.+-. -++.....+...|.+.|++.+|+.-|-... .|+......++..+...|.
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~-~~~~~~~~~ll~~~~~~~~------------- 136 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGT-DPSAFAYVMLLEEWSTKGY------------- 136 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS--HHHHHHHHHHHHHHHHHTS-------------
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcC-ChhHHHHHHHHHHHHHhcC-------------
Confidence 22222222 11222 236777888899999999999998775432 2222222224443333443
Q ss_pred cCCCCcchHHHHHH-HHHhcCCchHHHHHHHHHHHC
Q 037236 771 LEPDKAENYVLVSN-IYAGSEKWDDVRMMRQRMKER 805 (953)
Q Consensus 771 l~p~~~~~~~~l~~-~y~~~g~~~~a~~~~~~m~~~ 805 (953)
|.+...++.-+- -|...|+...|...+....++
T Consensus 137 --~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 137 --PSEADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp --S--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred --CcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 333333333333 467778999999888777654
No 458
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.15 E-value=4.7e+02 Score=31.64 Aligned_cols=47 Identities=17% Similarity=0.145 Sum_probs=37.5
Q ss_pred HHHhCCCCCC--hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcch
Q 037236 732 LIIEMPEEAD--AGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAEN 778 (953)
Q Consensus 732 ~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~ 778 (953)
+|...+.+|- ..+..+-++.+.+++|+..|...+.+++++.|..+.+
T Consensus 1072 YFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A 1120 (1202)
T KOG0292|consen 1072 YFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVA 1120 (1202)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHH
Confidence 3555555553 4567888899999999999999999999999976653
No 459
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=27.12 E-value=1.3e+02 Score=33.31 Aligned_cols=34 Identities=21% Similarity=0.215 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC
Q 037236 742 AGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDK 775 (953)
Q Consensus 742 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~ 775 (953)
..++++-++.+.+++|+..|-..+++++++.|..
T Consensus 300 ~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 300 ILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 3466777788899999999999999999999854
No 460
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=26.59 E-value=4.7e+02 Score=23.39 Aligned_cols=80 Identities=15% Similarity=0.229 Sum_probs=47.1
Q ss_pred cCChHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCC
Q 037236 652 HGYGKEAIELFEKMLALGHKP-----DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGK 725 (953)
Q Consensus 652 ~g~~~~A~~l~~~m~~~g~~P-----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~ 725 (953)
.|....-..++++.... +.+ |..-|..+--.|...- +++..+|+.|.. .++--. ...|......+...|+
T Consensus 39 ~~~~~~L~~lLer~~~~-f~~~~~Y~nD~RylkiWi~ya~~~--~~~~~if~~l~~-~~IG~~~A~fY~~wA~~le~~~~ 114 (126)
T PF08311_consen 39 GGKQSGLLELLERCIRK-FKDDERYKNDERYLKIWIKYADLS--SDPREIFKFLYS-KGIGTKLALFYEEWAEFLEKRGN 114 (126)
T ss_dssp CCCCHHHHHHHHHHHHH-HTTSGGGTT-HHHHHHHHHHHTTB--SHHHHHHHHHHH-HTTSTTBHHHHHHHHHHHHHTT-
T ss_pred CCchhHHHHHHHHHHHH-HhhhHhhcCCHHHHHHHHHHHHHc--cCHHHHHHHHHH-cCccHHHHHHHHHHHHHHHHcCC
Confidence 34445555566665543 111 3445554444444432 378888888854 555544 5667777777888888
Q ss_pred HHHHHHHHHh
Q 037236 726 LDDAFKLIIE 735 (953)
Q Consensus 726 ~~eA~~~~~~ 735 (953)
+++|.++++.
T Consensus 115 ~~~A~~I~~~ 124 (126)
T PF08311_consen 115 FKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888887764
No 461
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=26.51 E-value=3.4e+02 Score=31.02 Aligned_cols=82 Identities=17% Similarity=0.116 Sum_probs=46.5
Q ss_pred hcCCHHHHHHHhhhcC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037236 620 KCGCLEQSRRVFDRLK----DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLK 695 (953)
Q Consensus 620 ~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~ 695 (953)
-.|+...|...+.... ...-+..-.|.....+.|..-+|-.++.+.+... .....++..+.+++.-..+++.|++
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHH
Confidence 3466666666555443 1122233334444555555566666666665532 3345666677777777777777777
Q ss_pred HHHHHHH
Q 037236 696 YFSQMQK 702 (953)
Q Consensus 696 ~~~~m~~ 702 (953)
.|+.+.+
T Consensus 698 ~~~~a~~ 704 (886)
T KOG4507|consen 698 AFRQALK 704 (886)
T ss_pred HHHHHHh
Confidence 7776654
No 462
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=26.33 E-value=35 Score=27.56 Aligned_cols=19 Identities=26% Similarity=0.595 Sum_probs=15.2
Q ss_pred HHhcCCchHHHHHHHHHHH
Q 037236 786 YAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 786 y~~~g~~~~a~~~~~~m~~ 804 (953)
....-.|++|.+++.+|+.
T Consensus 49 ~~~~~~w~~ar~~~~Km~~ 67 (79)
T cd02679 49 AGVGSQWERARRLQQKMKT 67 (79)
T ss_pred ccccHHHHHHHHHHHHHHH
Confidence 3455679999999999976
No 463
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=26.18 E-value=9.1e+02 Score=27.20 Aligned_cols=61 Identities=18% Similarity=0.233 Sum_probs=46.8
Q ss_pred HHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCccCCc
Q 037236 749 LRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKERGLQKEAG 812 (953)
Q Consensus 749 l~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~ 812 (953)
+.++....++..+.+-.+.++...-+.+.+..+-++.++..|++..|.++.. ..++.+.||
T Consensus 213 Vr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~---~sni~~~~g 273 (696)
T KOG2471|consen 213 VRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLL---VSNIHKEAG 273 (696)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHH---hcccccccC
Confidence 4455566778888888888888888888888899999999999999988653 334555544
No 464
>PF08091 Toxin_21: Spider insecticidal peptide; InterPro: IPR012626 This family consists of insecticidal peptides isolated from venom of spiders of Aptostichus schlingeri (Trap-door spider) and Calisoga sp. Nine insecticidal peptides were isolated from the venom of the A. schlinger spider and seven of these toxins cause flaccid paralysis to insect larvae within 10 min of injection. However, all nine peptides were lethal within 24 hours [].; GO: 0009405 pathogenesis, 0005576 extracellular region
Probab=25.59 E-value=25 Score=22.97 Aligned_cols=9 Identities=33% Similarity=0.870 Sum_probs=6.9
Q ss_pred cCCcCCcch
Q 037236 940 SCGDIGSCW 948 (953)
Q Consensus 940 sc~~~~~~~ 948 (953)
+|++||.|.
T Consensus 18 ~C~~fWtC~ 26 (39)
T PF08091_consen 18 NCGYFWTCQ 26 (39)
T ss_pred CccceEEEE
Confidence 567899885
No 465
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=24.74 E-value=4.9e+02 Score=28.67 Aligned_cols=55 Identities=5% Similarity=0.028 Sum_probs=41.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhcCCCCChh--HHHHHHHHHhh--cCCHHHHHHHHHhCCC
Q 037236 682 MACNHAGLVENGLKYFSQMQKLHAVKPKLE--HYACVVDMLGR--AGKLDDAFKLIIEMPE 738 (953)
Q Consensus 682 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~--~~~~lv~~l~~--~g~~~eA~~~~~~~~~ 738 (953)
....+.+++..|.++|+.+.+. +.++.. .|..+..+|.. .-++++|.+.++....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r--l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR--LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh--CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3455889999999999999764 555544 56666666665 5678899999988653
No 466
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=24.44 E-value=3.1e+02 Score=22.56 Aligned_cols=42 Identities=12% Similarity=0.108 Sum_probs=32.9
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHhhccCChHHHHHHhccCC
Q 037236 186 GVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP 227 (953)
Q Consensus 186 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~ 227 (953)
++|+.....|+..|+.+|..+++...-+=..+...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 678888888888888888888888777666777777776664
No 467
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=24.44 E-value=2.2e+02 Score=20.33 Aligned_cols=34 Identities=24% Similarity=0.197 Sum_probs=23.7
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 037236 548 YSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILS 581 (953)
Q Consensus 548 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 581 (953)
..+.|-..++..++++|.+.|+..+...+..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3456777778888888888887776666655554
No 468
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=23.97 E-value=6.9e+02 Score=24.48 Aligned_cols=27 Identities=11% Similarity=0.085 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 037236 641 SWNAIIGGHGIHGYGKEAIELFEKMLA 667 (953)
Q Consensus 641 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 667 (953)
..+.++..+...|+++.|-+.|.-++.
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR 69 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIR 69 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 345555666666666666666666655
No 469
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=23.96 E-value=8.8e+02 Score=25.65 Aligned_cols=83 Identities=12% Similarity=-0.053 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHHHHhcCC---CCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHH
Q 037236 689 LVENGLKYFSQMQKLHAV---KPKLEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSCRTYGALKMGEKVA 765 (953)
Q Consensus 689 ~~~~a~~~~~~m~~~~~~---~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 765 (953)
-.++|.+.|+.......- ..++.....+.....+.|..++-..+++.....+++..-..++.+..-..+.+...+++
T Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l 224 (324)
T PF11838_consen 145 CVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLL 224 (324)
T ss_dssp HHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHH
Confidence 367888889888663111 33456666777778888887766666666665677888888899888888999999999
Q ss_pred HHHhcc
Q 037236 766 KTLLEL 771 (953)
Q Consensus 766 ~~~~~l 771 (953)
+.++.-
T Consensus 225 ~~~l~~ 230 (324)
T PF11838_consen 225 DLLLSN 230 (324)
T ss_dssp HHHHCT
T ss_pred HHHcCC
Confidence 999983
No 470
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=23.80 E-value=2.5e+02 Score=28.75 Aligned_cols=18 Identities=17% Similarity=0.183 Sum_probs=7.9
Q ss_pred HHHhcCCHHHHHHHHHHH
Q 037236 683 ACNHAGLVENGLKYFSQM 700 (953)
Q Consensus 683 a~~~~g~~~~a~~~~~~m 700 (953)
-|.+.|++++|.++|+.+
T Consensus 187 ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 187 EYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHCCCHHHHHHHHHHH
Confidence 344444444444444444
No 471
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=23.66 E-value=4.7e+02 Score=23.40 Aligned_cols=59 Identities=12% Similarity=0.214 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHH
Q 037236 657 EAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVV 717 (953)
Q Consensus 657 ~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv 717 (953)
+..+-++......+-|++.....-+.||.+.+++..|.++|+-+..+ ..+....|..++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHH
Confidence 34445556666678899999999999999999999999999988443 333334566555
No 472
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=23.27 E-value=1.4e+03 Score=27.80 Aligned_cols=42 Identities=19% Similarity=0.307 Sum_probs=25.9
Q ss_pred HHHHhhHhcCChhHHHHHHhcCCC-C-CcccHHHH-HHHHHcCCC
Q 037236 308 ALVDMYAKCGFLSEAQILFDKNNN-K-NVVSWNTI-IGAFSMAGD 349 (953)
Q Consensus 308 ~li~~~~~~g~~~~A~~~f~~~~~-~-d~~~~~~l-i~~~~~~g~ 349 (953)
.++.-+.++|+++.|.+...+-.. + -...|-.. ..+|.++-.
T Consensus 330 ~~vyy~lR~G~lk~A~~~l~e~~~~~~~l~~~f~~y~~A~~~~~~ 374 (835)
T KOG2168|consen 330 PLVYYLLRCGDLKAASQFLNENKDFFEKLAELFPTYFNAYAKNLS 374 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhcCCC
Confidence 466777889999999888876543 1 22233333 566665533
No 473
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=23.08 E-value=1.3e+03 Score=27.16 Aligned_cols=270 Identities=11% Similarity=0.057 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhCCCCCchHHHHHHHhhHhcCChhHHHHHHhcCCCCC-cccHHHHHHHHHcCCChhHHHHHHHHHHhc
Q 037236 285 DLGILVHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFDKNNNKN-VVSWNTIIGAFSMAGDVCGTFDLLRKMQMK 363 (953)
Q Consensus 285 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~d-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 363 (953)
+...++.......--.+....++.|+..+... +.++-.++++++.. . ...|..++++....|-.....-+.+.+...
T Consensus 292 ~~l~~L~~~~~~~~~~~~~~~f~~lv~~lR~~-~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~ 369 (574)
T smart00638 292 EVLKHLVQDIASDVQEPAAAKFLRLVRLLRTL-SEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKNK 369 (574)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHhC-CHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q ss_pred cCCCCC-chhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCcccHHHHhccCCCCChhhHHH
Q 037236 364 EEEMKP-NEVTVLNVLTSCSEKSELLSLKELHGYSLRHGFDNDELVANAFVVAYAKCGSEISAENVFHGMDSRTVSSWNA 442 (953)
Q Consensus 364 g~~~~p-~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~ 442 (953)
. +.+ ........+-........+....++..+......+...++.+.+-. +.+
T Consensus 370 ~--~~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~------------------------~~~ 423 (574)
T smart00638 370 K--ITPLEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLA------------------------YGS 423 (574)
T ss_pred C--CCHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHH------------------------HHH
Q ss_pred HHHHHHhcCCh------HHHHHHHHHhhhCCC-CCCcchHHHHHHhhccccccchhhHHHHHHHHhCCCCchhhHhhHHH
Q 037236 443 LICGYAQNGDH------LKALDYFLQMTHSDL-EPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLS 515 (953)
Q Consensus 443 li~~~~~~g~~------~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 515 (953)
|+..++..... ++....+.+...... .-|..--...|.++++.|.......+...+. .....+..+-...+.
T Consensus 424 lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~~i~~l~~~l~-~~~~~~~~iR~~Av~ 502 (574)
T smart00638 424 LVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPSSIKVLEPYLE-GAEPLSTFIRLAAIL 502 (574)
T ss_pred HHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCChhHHHHHHHhcC-CCCCCCHHHHHHHHH
Q ss_pred HHHhc--CChhHHHHHHHhcccCCcccHHHHHHHHHhcCChhHHHHHHHHHHH-cCCCCChhhHHHHHHHh
Q 037236 516 LYMHC--EKSSSARVLFDEMEDKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFS-IGVQPCEISIVSILSAC 583 (953)
Q Consensus 516 ~y~~~--g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~a~ 583 (953)
++.+. ...+.+..++-.+-.........-+.+|...=+..--...++.|.. ....||...-+.+.+..
T Consensus 503 Alr~~a~~~p~~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t~P~~~~l~~ia~~l~~E~~~QV~sfv~S~l 573 (574)
T smart00638 503 ALRNLAKRDPRKVQEVLLPIYLNRAEPPEVRMAAVLVLMETKPSVALLQRIAELLNKEPNLQVASFVYSHI 573 (574)
T ss_pred HHHHHHHhCchHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHhhcCcHHHHHHhHHhh
No 474
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=22.85 E-value=9.5e+02 Score=25.65 Aligned_cols=116 Identities=12% Similarity=0.065 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CC-ChhHHHHHHHHHHhc---CChhHHHH
Q 037236 690 VENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE-EA-DAGIWSSLLRSCRTY---GALKMGEK 763 (953)
Q Consensus 690 ~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~-~~~~~~~ll~~~~~~---g~~~~a~~ 763 (953)
.+.-+.+++++++. .|+ ....-.++..+.+....++..+.++++.. .| +..+|..++..+..+ -.++....
T Consensus 47 ~E~klsilerAL~~---np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~ 123 (321)
T PF08424_consen 47 AERKLSILERALKH---NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRD 123 (321)
T ss_pred HHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHH
Confidence 45667788887764 455 66667778888888888888888888765 34 688999999987663 25778888
Q ss_pred HHHHHhccCC-----------CCcc-------hHHHHHHHHHhcCCchHHHHHHHHHHHCCCc
Q 037236 764 VAKTLLELEP-----------DKAE-------NYVLVSNIYAGSEKWDDVRMMRQRMKERGLQ 808 (953)
Q Consensus 764 ~~~~~~~l~p-----------~~~~-------~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 808 (953)
++.+.+..-. +-+. .+..+......+|-++.|..+++.+-+..+-
T Consensus 124 ~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~ 186 (321)
T PF08424_consen 124 VYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFF 186 (321)
T ss_pred HHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcC
Confidence 8877776311 1111 2234455678899999999999999887653
No 475
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=22.82 E-value=4.7e+02 Score=29.87 Aligned_cols=110 Identities=14% Similarity=0.149 Sum_probs=57.3
Q ss_pred hhHHHHHHhcCChhHHHHHHHhcccC--Cccc---HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhcc
Q 037236 511 ISLLSLYMHCEKSSSARVLFDEMEDK--SLVS---WNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQ 585 (953)
Q Consensus 511 ~~li~~y~~~g~~~~A~~~f~~~~~~--~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 585 (953)
..|+.-|.+.+++++|..++..|.=. .... .+.+...+.+..--++....++.+...=..|....-....
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~----- 486 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATV----- 486 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHH-----
Confidence 35677899999999999999998621 1222 3333444445444445555555554432223211111111
Q ss_pred ccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHH
Q 037236 586 LSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKDKDVT 640 (953)
Q Consensus 586 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~ 640 (953)
.+-+..+.+.+.+ +...+.+.+++++|..+--++..+|..
T Consensus 487 ---~ey~d~V~~~aRR------------fFhhLLR~~rfekAFlLAvdi~~~DLF 526 (545)
T PF11768_consen 487 ---LEYRDPVSDLARR------------FFHHLLRYQRFEKAFLLAVDIGDRDLF 526 (545)
T ss_pred ---HHHHHHHHHHHHH------------HHHHHHHhhHHHHHHHHHHhccchHHH
Confidence 1111222222221 223344567888888877777666654
No 476
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=22.78 E-value=3.8e+02 Score=26.23 Aligned_cols=19 Identities=21% Similarity=0.197 Sum_probs=12.5
Q ss_pred EEEEEeeCCCCCccHHHHH
Q 037236 821 NIHSFVVGDNMHPEWEEIR 839 (953)
Q Consensus 821 ~~~~f~~~d~~hp~~~~i~ 839 (953)
..+.|.+|.+.|.-...+.
T Consensus 121 ~~pvfrsGs~t~tp~y~~~ 139 (199)
T PF04090_consen 121 IAPVFRSGSRTHTPLYAIT 139 (199)
T ss_pred ccccccCCCcccchHHHHH
Confidence 4578999998884433343
No 477
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=22.60 E-value=2.5e+02 Score=27.97 Aligned_cols=54 Identities=19% Similarity=0.231 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHCCCCC----CHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHhcCCCC
Q 037236 655 GKEAIELFEKMLALGHKP----DTFTFV-GILMACNHAGLVENGLKYFSQMQKLHAVKP 708 (953)
Q Consensus 655 ~~~A~~l~~~m~~~g~~P----~~~t~~-~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 708 (953)
...|++.|++..+..-.| +..+.. .+.....+.|+.++|.++|.+++...+...
T Consensus 141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 456777777777654333 333433 344456688999999999988876544443
No 478
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=22.51 E-value=1.3e+02 Score=31.37 Aligned_cols=39 Identities=15% Similarity=0.160 Sum_probs=31.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHH
Q 037236 541 WNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSI 579 (953)
Q Consensus 541 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 579 (953)
|+..|..-.+.|++++|+.+++|..+.|+.--..||...
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 678899999999999999999999999877655555433
No 479
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=22.13 E-value=9.5e+02 Score=25.38 Aligned_cols=61 Identities=8% Similarity=0.022 Sum_probs=26.3
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHhhhcC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 037236 607 DAFVACSIIDMYAKCGCLEQSRRVFDRLK-DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLA 667 (953)
Q Consensus 607 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 667 (953)
++.....+.....+.|..++-..+++... .++..-...++.+++-..+.+...++++....
T Consensus 168 ~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~ 229 (324)
T PF11838_consen 168 PPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLDLLLS 229 (324)
T ss_dssp -HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHHHHcC
Confidence 33344444444445555444444444333 23444445555555555555555555555554
No 480
>PRK13342 recombination factor protein RarA; Reviewed
Probab=22.08 E-value=1.1e+03 Score=26.20 Aligned_cols=48 Identities=19% Similarity=0.225 Sum_probs=36.1
Q ss_pred HHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 037236 642 WNAIIGGHGI---HGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGL 689 (953)
Q Consensus 642 ~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~ 689 (953)
+..+++++.+ .++.+.|+..+.+|++.|..|..+.-..+..++...|.
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~ 280 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGL 280 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcc
Confidence 4445555554 47899999999999999999987777777777666554
No 481
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=22.04 E-value=9.4e+02 Score=25.34 Aligned_cols=94 Identities=13% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhh----------cCCHHH
Q 037236 659 IELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGR----------AGKLDD 728 (953)
Q Consensus 659 ~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~----------~g~~~e 728 (953)
.++++.|.+.++.|.-..|.-+.-.+++.=.+.+.+.+|+.+.. |..-|..|+..++. .|++..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s------D~~rfd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS------DPQRFDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc------ChhhhHHHHHHHHHHHHHHHHHHHhcchHH
Q ss_pred HHHHHHhCCCCCChhHHHHHHHHHHhcCChh
Q 037236 729 AFKLIIEMPEEADAGIWSSLLRSCRTYGALK 759 (953)
Q Consensus 729 A~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 759 (953)
-.++++.-| ..|....-++.+..+..+..+
T Consensus 337 nmkLLQ~yp-~tdi~~~l~~A~~Lr~~k~~~ 366 (370)
T KOG4567|consen 337 NMKLLQNYP-TTDISKMLAVADSLRDKKHRS 366 (370)
T ss_pred HHHHHhcCC-CCCHHHHHHHHHHHHhccccC
No 482
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=21.87 E-value=1.1e+03 Score=25.87 Aligned_cols=113 Identities=20% Similarity=0.285 Sum_probs=82.0
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCCCCC------Ch--hHHHHHHHHHHhcCChhHHHHHHHHHhcc---CCC----CcchH
Q 037236 715 CVVDMLGRAGKLDDAFKLIIEMPEEA------DA--GIWSSLLRSCRTYGALKMGEKVAKTLLEL---EPD----KAENY 779 (953)
Q Consensus 715 ~lv~~l~~~g~~~eA~~~~~~~~~~~------~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~l---~p~----~~~~~ 779 (953)
.|+..+-..|+.++|.+++.+.+.+. .. ...---+..|...+|+-.|....+++... +|+ .-..|
T Consensus 136 ~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY 215 (439)
T KOG1498|consen 136 MLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYY 215 (439)
T ss_pred HHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHH
Confidence 46677888999999999998887531 11 11222345688889999998888887653 232 23468
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHCCCccCCceeEEEeCCEEEEEee
Q 037236 780 VLVSNIYAGSEKWDDVRMMRQRMKERGLQKEAGCSWIELGGNIHSFVV 827 (953)
Q Consensus 780 ~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~ 827 (953)
.++..++...+.+=++-+.++..-+.|..+...--|+++-..+..|..
T Consensus 216 ~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~f~~ 263 (439)
T KOG1498|consen 216 ELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVSFCV 263 (439)
T ss_pred HHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhheeEEe
Confidence 888889999999999999999998887777644558777666666643
No 483
>COG5431 Uncharacterized metal-binding protein [Function unknown]
Probab=21.40 E-value=45 Score=27.93 Aligned_cols=12 Identities=42% Similarity=1.007 Sum_probs=10.4
Q ss_pred ccccccccCCcC
Q 037236 933 HFRDGVCSCGDI 944 (953)
Q Consensus 933 ~~~~g~csc~~~ 944 (953)
-.+.|-|||.||
T Consensus 46 Il~~gfCSCp~~ 57 (117)
T COG5431 46 ILEGGFCSCPDF 57 (117)
T ss_pred EEEcCcccCHHH
Confidence 678899999987
No 484
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=21.26 E-value=4.7e+02 Score=28.56 Aligned_cols=175 Identities=15% Similarity=0.082 Sum_probs=79.9
Q ss_pred hhHHHHHHHhccccchHHHHHHHHHHHHc--CCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHH
Q 037236 574 ISIVSILSACSQLSALRLGKETHCYALKA--ILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGG 648 (953)
Q Consensus 574 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~ 648 (953)
+++..+|+...-+|+.....++.+.+.+. |..|...+---+.-+|.-.|++.+|.++|-.+. ++.-..+...--.
T Consensus 236 fsL~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niLlyIqrtks~~~~~~y~ 315 (525)
T KOG3677|consen 236 FSLLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNILLYIQRTKSMFSRTTYQ 315 (525)
T ss_pred HHHHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhh
Confidence 34445555555566655555555555442 344444443455667777888888888887654 1111111111111
Q ss_pred HHhc-CChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHH-------hcCCHHHHHHHHHHHHHhcCCCCChhHHHHHH
Q 037236 649 HGIH-GYGKEAIELFEKMLALGHKP---DTFTFVGILMACN-------HAGLVENGLKYFSQMQKLHAVKPKLEHYACVV 717 (953)
Q Consensus 649 ~~~~-g~~~~A~~l~~~m~~~g~~P---~~~t~~~ll~a~~-------~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv 717 (953)
|... .+.+.--.++.-.+. ..| | .++.+.+.-|+ ..|+.+.-..+|.....+ -+.|.+..|..+.
T Consensus 316 ~d~inKq~eqm~~llai~l~--~yPq~iD-ESi~s~l~Ek~~d~ml~mqng~~q~~ks~f~y~cpk-flsp~~~~~dgv~ 391 (525)
T KOG3677|consen 316 YDMINKQNEQMHHLLAICLS--MYPQMID-ESIHSQLAEKYGDKMLPMQNGDPQVFKSLFSYLCPK-FLSPVVPNYDGVL 391 (525)
T ss_pred HhhhhhhHHHHHHHHHHHHH--hCchhhh-HHHHHHHHHHhcchhhhhhcCChHHHHHHHHHcCcc-ccCCCCccccccc
Confidence 1111 122222222222222 234 3 33333333332 345665555555544332 2345455555555
Q ss_pred HHHhhcCCHHHHHHHHHhCCCCCChhHHHHHHHHH
Q 037236 718 DMLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSC 752 (953)
Q Consensus 718 ~~l~~~g~~~eA~~~~~~~~~~~~~~~~~~ll~~~ 752 (953)
.-|.+.--...-..+......+.+..+..+.+..|
T Consensus 392 ~~y~kePl~~qlq~fld~v~qq~dl~~~rsylkly 426 (525)
T KOG3677|consen 392 PNYHKEPLLQQLQVFLDEVSQQADLPTIRSYLKLY 426 (525)
T ss_pred ccccccHHHHHHHHHhHHHhhhccchHHHHHHHHH
Confidence 54444433333333444444445555555555554
No 485
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=20.99 E-value=6.2e+02 Score=27.30 Aligned_cols=82 Identities=15% Similarity=0.163 Sum_probs=51.0
Q ss_pred HHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCccCCceeEEEeCCEEEEEeeCCCCCc--cHHH
Q 037236 760 MGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKERGLQKEAGCSWIELGGNIHSFVVGDNMHP--EWEE 837 (953)
Q Consensus 760 ~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~d~~hp--~~~~ 837 (953)
...+++-++--.+|+|+.....+ +|.+++++++++|-.. --..++|+.... ...+
T Consensus 29 ~vl~AA~~l~laDPeDSD~N~if-----------~avkiydeL~~~Gedv------------eVA~VsG~~~~~v~ad~~ 85 (344)
T PF04123_consen 29 AVLDAAVKLALADPEDSDVNAIF-----------GAVKIYDELKAEGEDV------------EVAVVSGSPDVGVEADRK 85 (344)
T ss_pred HHHHHHHHHhcCCcccccHHHHH-----------HHHHHHHHHHhcCCCe------------EEEEEECCCCCchhhHHH
Confidence 34455556666799999877665 5789999999887421 135788886653 2345
Q ss_pred HHHHHHHHHHHHHhcCcccCCCccccccchHH
Q 037236 838 IRGMWGRLEEQISKIGYKPYTEAVLHELEEEE 869 (953)
Q Consensus 838 i~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 869 (953)
|.+.|+++..+ +.||.-.+..|-.|+|
T Consensus 86 I~~qld~vl~~-----~~~~~~i~VsDGaeDE 112 (344)
T PF04123_consen 86 IAEQLDEVLSK-----FDPDSAIVVSDGAEDE 112 (344)
T ss_pred HHHHHHHHHHh-----CCCCEEEEEecChhhh
Confidence 66666665433 4566555555544443
No 486
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=20.59 E-value=3.3e+02 Score=19.45 Aligned_cols=32 Identities=19% Similarity=0.215 Sum_probs=18.4
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 037236 650 GIHGYGKEAIELFEKMLALGHKPDTFTFVGIL 681 (953)
Q Consensus 650 ~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll 681 (953)
.+.|-..++..++++|.+.|+.-+...+..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 34555556666666666666655555554443
No 487
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=20.16 E-value=1.4e+02 Score=29.65 Aligned_cols=53 Identities=15% Similarity=0.224 Sum_probs=47.7
Q ss_pred HhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHC
Q 037236 753 RTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKER 805 (953)
Q Consensus 753 ~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 805 (953)
...+|.+.+-+++.+++++-|+....+..++...-++|+++.|.+.+....+.
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 45688999999999999999999999999999999999999999987766553
No 488
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=20.09 E-value=4.8e+02 Score=30.63 Aligned_cols=29 Identities=24% Similarity=0.298 Sum_probs=0.0
Q ss_pred CChHHHHHHHHHhhhCCCCCCcchHHHHH
Q 037236 451 GDHLKALDYFLQMTHSDLEPDLFSIGSLI 479 (953)
Q Consensus 451 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 479 (953)
|+..+|.+.+-.+...++.|..+-...+.
T Consensus 509 ~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~ 537 (566)
T PF07575_consen 509 GDFREAASLLVSLLKSPIAPKSFWPLLLC 537 (566)
T ss_dssp -----------------------------
T ss_pred hhHHHHHHHHHHHHCCCCCcHHHHHHHHH
Confidence 55555655555555555555555444443
No 489
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=20.03 E-value=1.2e+03 Score=25.70 Aligned_cols=156 Identities=17% Similarity=0.205 Sum_probs=88.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------cCCCCCh
Q 037236 641 SWNAIIGGHGIHGYGKEAIELFEKMLALGHKP--DTFTFVGILMACNHAGLVENGLKYFSQMQKL--------HAVKPKL 710 (953)
Q Consensus 641 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P--~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~--------~~~~p~~ 710 (953)
...-+..-|...|+.+.|++.|.+.++---.- -...+..++..-.-.|+|.....+-.+.... ..+.+..
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 34556777889999999999999966531111 1223555555556677777666666655331 1234446
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhCCC---------CC-ChhHHHHHHHHHHhcCChhH-----HHHHHHHHhccCCCC
Q 037236 711 EHYACVVDMLGRAGKLDDAFKLIIEMPE---------EA-DAGIWSSLLRSCRTYGALKM-----GEKVAKTLLELEPDK 775 (953)
Q Consensus 711 ~~~~~lv~~l~~~g~~~eA~~~~~~~~~---------~~-~~~~~~~ll~~~~~~g~~~~-----a~~~~~~~~~l~p~~ 775 (953)
..+..|+.+..+ +++.|.+.|-.... .| |..+|.. +.+....++-+. .-..++.+++++|.
T Consensus 232 ~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYgg-LcALAtfdr~~Lk~~vi~n~~Fk~flel~Pq- 307 (466)
T KOG0686|consen 232 KCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGG-LCALATFDRQDLKLNVIKNESFKLFLELEPQ- 307 (466)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHh-hHhhccCCHHHHHHHHHcchhhhhHHhcChH-
Confidence 677777776666 77777665543322 23 3444443 334333332222 23467788888884
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 776 AENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 776 ~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
....|...|. +++..-.++.+.++.
T Consensus 308 --lr~il~~fy~--sky~~cl~~L~~~k~ 332 (466)
T KOG0686|consen 308 --LREILFKFYS--SKYASCLELLREIKP 332 (466)
T ss_pred --HHHHHHHHhh--hhHHHHHHHHHHhcc
Confidence 2233444443 456666665555543
Done!