Query 037236
Match_columns 953
No_of_seqs 802 out of 5936
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 17:12:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037236.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037236hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 2.1E-40 7.2E-45 393.4 35.4 495 210-788 63-596 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1.7E-39 5.9E-44 385.6 41.5 479 312-804 62-578 (597)
3 1w3b_A UDP-N-acetylglucosamine 99.9 2.5E-24 8.5E-29 240.0 38.7 370 341-791 6-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 99.9 7.9E-24 2.7E-28 235.9 38.6 350 444-804 6-367 (388)
5 4g26_A Pentatricopeptide repea 99.9 4.2E-25 1.4E-29 250.2 20.8 184 539-723 27-223 (501)
6 4g26_A Pentatricopeptide repea 99.9 6.3E-25 2.2E-29 248.8 17.2 136 552-687 84-223 (501)
7 2y4t_A DNAJ homolog subfamily 99.9 3E-22 1E-26 228.0 28.3 336 436-811 25-412 (450)
8 2gw1_A Mitochondrial precursor 99.9 5.1E-21 1.8E-25 221.8 31.8 258 520-782 202-489 (514)
9 1xi4_A Clathrin heavy chain; a 99.9 4.7E-17 1.6E-21 193.4 63.8 378 374-797 988-1376(1630)
10 2gw1_A Mitochondrial precursor 99.9 2.5E-20 8.6E-25 216.0 34.4 426 335-804 7-477 (514)
11 1xi4_A Clathrin heavy chain; a 99.9 4.8E-16 1.7E-20 184.9 67.9 312 443-802 991-1306(1630)
12 3fp2_A TPR repeat-containing p 99.9 1.3E-19 4.4E-24 211.3 30.4 415 337-804 28-490 (537)
13 3fp2_A TPR repeat-containing p 99.8 7.1E-19 2.4E-23 205.0 33.2 443 233-781 27-501 (537)
14 2y4t_A DNAJ homolog subfamily 99.8 5.3E-19 1.8E-23 201.0 31.0 303 471-804 25-357 (450)
15 3ieg_A DNAJ homolog subfamily 99.8 3.4E-17 1.2E-21 179.5 32.6 302 473-804 4-334 (359)
16 3ieg_A DNAJ homolog subfamily 99.8 5E-17 1.7E-21 178.2 31.3 313 437-789 3-353 (359)
17 3hym_B Cell division cycle pro 99.8 6.9E-17 2.3E-21 174.9 29.9 286 504-793 19-322 (330)
18 3hym_B Cell division cycle pro 99.7 4.5E-16 1.5E-20 168.4 27.5 261 536-803 20-297 (330)
19 1b89_A Protein (clathrin heavy 99.7 2.7E-16 9.3E-21 169.0 22.8 222 212-466 15-236 (449)
20 1b89_A Protein (clathrin heavy 99.7 1.7E-16 5.7E-21 170.6 20.4 321 417-773 14-343 (449)
21 1fch_A Peroxisomal targeting s 99.7 2.5E-16 8.5E-21 173.6 22.6 275 519-800 37-354 (368)
22 2xm6_A Protein corresponding t 99.7 5.2E-15 1.8E-19 169.8 33.1 365 405-788 38-452 (490)
23 3mkr_A Coatomer subunit epsilo 99.7 2.1E-15 7.2E-20 159.3 26.5 219 514-804 41-263 (291)
24 2ooe_A Cleavage stimulation fa 99.7 4.5E-14 1.5E-18 163.8 36.2 208 591-804 256-491 (530)
25 4eqf_A PEX5-related protein; a 99.7 9.2E-16 3.2E-20 168.9 19.7 251 509-800 67-351 (365)
26 1fch_A Peroxisomal targeting s 99.7 2.3E-15 7.8E-20 165.8 22.7 239 506-770 97-358 (368)
27 2xm6_A Protein corresponding t 99.7 1.6E-13 5.3E-18 157.5 38.8 352 434-806 36-433 (490)
28 2ooe_A Cleavage stimulation fa 99.7 3.6E-14 1.2E-18 164.6 32.2 369 374-775 49-496 (530)
29 4g1t_A Interferon-induced prot 99.7 2E-14 6.9E-19 164.3 29.1 279 521-816 152-470 (472)
30 3cv0_A Peroxisome targeting si 99.7 3.4E-15 1.2E-19 161.2 20.6 252 508-800 22-310 (327)
31 4eqf_A PEX5-related protein; a 99.6 5.2E-15 1.8E-19 162.8 21.3 230 537-804 64-309 (365)
32 3mkr_A Coatomer subunit epsilo 99.6 4.6E-14 1.6E-18 149.0 22.5 246 410-733 38-288 (291)
33 2pl2_A Hypothetical conserved 99.6 1.6E-14 5.6E-19 145.5 18.0 193 605-802 2-211 (217)
34 3cv0_A Peroxisome targeting si 99.6 2E-13 6.8E-18 147.2 26.1 273 436-773 20-317 (327)
35 4g1t_A Interferon-induced prot 99.6 1.2E-13 4.2E-18 157.7 25.1 380 371-783 51-471 (472)
36 3uq3_A Heat shock protein STI1 99.6 1.2E-13 3.9E-18 143.3 22.3 217 539-804 6-235 (258)
37 3spa_A Mtrpol, DNA-directed RN 99.6 3.2E-15 1.1E-19 172.8 9.0 127 607-734 126-260 (1134)
38 3spa_A Mtrpol, DNA-directed RN 99.6 1.2E-15 4E-20 176.4 4.6 151 196-348 123-286 (1134)
39 3u4t_A TPR repeat-containing p 99.5 6.8E-13 2.3E-17 138.9 21.0 244 509-790 5-269 (272)
40 2h6f_A Protein farnesyltransfe 99.5 8.2E-13 2.8E-17 144.2 21.7 223 538-802 97-344 (382)
41 2h6f_A Protein farnesyltransfe 99.5 5.6E-13 1.9E-17 145.5 19.4 242 507-789 97-366 (382)
42 1xnf_A Lipoprotein NLPI; TPR, 99.5 7.9E-13 2.7E-17 138.6 19.6 238 518-799 16-269 (275)
43 3e4b_A ALGK; tetratricopeptide 99.5 4.9E-12 1.7E-16 142.7 26.3 350 385-787 17-401 (452)
44 2ho1_A Type 4 fimbrial biogene 99.5 2E-12 6.9E-17 133.6 20.7 195 608-805 37-238 (252)
45 2vq2_A PILW, putative fimbrial 99.5 3.1E-12 1.1E-16 129.3 21.4 196 607-805 7-211 (225)
46 2q7f_A YRRB protein; TPR, prot 99.5 7.6E-13 2.6E-17 135.8 16.8 211 538-789 23-240 (243)
47 2ho1_A Type 4 fimbrial biogene 99.5 4.8E-12 1.6E-16 130.7 22.9 205 538-781 37-248 (252)
48 3uq3_A Heat shock protein STI1 99.5 1.6E-12 5.4E-17 134.6 18.8 235 508-785 6-256 (258)
49 2vq2_A PILW, putative fimbrial 99.5 4.4E-12 1.5E-16 128.1 21.7 208 537-783 7-223 (225)
50 2q7f_A YRRB protein; TPR, prot 99.4 1.2E-12 4.1E-17 134.3 16.9 194 607-804 22-221 (243)
51 1ouv_A Conserved hypothetical 99.4 2.8E-11 9.7E-16 126.7 26.8 223 537-806 5-252 (273)
52 2pl2_A Hypothetical conserved 99.4 5E-12 1.7E-16 127.2 18.5 153 610-767 41-210 (217)
53 3vtx_A MAMA; tetratricopeptide 99.4 7.8E-12 2.7E-16 122.1 19.1 162 638-804 4-169 (184)
54 1ouv_A Conserved hypothetical 99.4 3.1E-11 1.1E-15 126.4 24.8 227 506-777 5-257 (273)
55 3e4b_A ALGK; tetratricopeptide 99.4 5.2E-11 1.8E-15 134.2 28.2 344 442-807 8-389 (452)
56 3u4t_A TPR repeat-containing p 99.4 2.4E-11 8.1E-16 127.1 23.5 242 473-753 4-266 (272)
57 4abn_A Tetratricopeptide repea 99.4 1.8E-12 6.3E-17 147.1 13.6 189 607-800 101-316 (474)
58 4gyw_A UDP-N-acetylglucosamine 99.4 9.3E-12 3.2E-16 146.8 18.6 161 638-803 8-172 (723)
59 3vtx_A MAMA; tetratricopeptide 99.3 1.5E-11 5E-16 120.1 16.3 165 607-776 4-175 (184)
60 1xnf_A Lipoprotein NLPI; TPR, 99.3 2.3E-11 7.9E-16 127.3 18.6 193 607-805 42-244 (275)
61 3sf4_A G-protein-signaling mod 99.3 7E-12 2.4E-16 139.7 15.3 296 436-794 8-365 (406)
62 4a1s_A PINS, partner of inscut 99.3 7.3E-12 2.5E-16 140.0 14.8 264 510-804 51-371 (411)
63 3sf4_A G-protein-signaling mod 99.3 1.6E-11 5.3E-16 136.8 17.2 267 507-804 9-335 (406)
64 3ro2_A PINS homolog, G-protein 99.3 2.3E-11 7.9E-16 131.3 16.9 262 512-804 10-331 (338)
65 2ond_A Cleavage stimulation fa 99.3 2.4E-10 8.1E-15 121.9 22.7 183 590-777 81-276 (308)
66 4i17_A Hypothetical protein; T 99.3 1.3E-10 4.5E-15 117.8 18.0 186 607-804 6-208 (228)
67 4e6h_A MRNA 3'-END-processing 99.2 1.5E-08 5.1E-13 118.0 36.9 444 288-778 52-577 (679)
68 4abn_A Tetratricopeptide repea 99.2 9.6E-11 3.3E-15 132.9 18.1 176 624-804 84-286 (474)
69 3ro2_A PINS homolog, G-protein 99.2 9E-11 3.1E-15 126.5 16.7 273 439-774 7-335 (338)
70 4i17_A Hypothetical protein; T 99.2 2.2E-10 7.5E-15 116.1 18.4 206 571-788 5-226 (228)
71 4a1s_A PINS, partner of inscut 99.2 5.6E-11 1.9E-15 132.7 14.4 268 473-773 49-374 (411)
72 4gyw_A UDP-N-acetylglucosamine 99.2 2.5E-11 8.5E-16 143.2 11.7 163 607-774 8-177 (723)
73 3ulq_A Response regulator aspa 99.2 5.6E-10 1.9E-14 123.2 21.9 230 513-771 109-368 (383)
74 3as5_A MAMA; tetratricopeptide 99.2 2.4E-10 8.3E-15 111.1 16.4 156 644-804 13-172 (186)
75 2ond_A Cleavage stimulation fa 99.2 7.7E-10 2.6E-14 117.9 20.9 194 607-805 49-270 (308)
76 3nf1_A KLC 1, kinesin light ch 99.2 5.3E-11 1.8E-15 127.0 10.8 236 538-804 27-306 (311)
77 3as5_A MAMA; tetratricopeptide 99.2 8.4E-10 2.9E-14 107.2 17.9 167 609-779 9-181 (186)
78 3ulq_A Response regulator aspa 99.2 3.1E-10 1.1E-14 125.3 16.6 196 608-804 143-367 (383)
79 3nf1_A KLC 1, kinesin light ch 99.2 4.8E-11 1.6E-15 127.3 9.2 241 506-774 26-310 (311)
80 4e6h_A MRNA 3'-END-processing 99.1 9.7E-08 3.3E-12 111.1 36.8 213 591-805 327-570 (679)
81 1hz4_A MALT regulatory protein 99.1 1.8E-08 6.2E-13 110.6 27.3 194 611-804 96-321 (373)
82 3qky_A Outer membrane assembly 99.1 3.4E-09 1.2E-13 109.9 19.2 84 745-851 151-247 (261)
83 4ga2_A E3 SUMO-protein ligase 99.1 1.6E-10 5.5E-15 108.2 8.2 140 647-791 5-149 (150)
84 3q15_A PSP28, response regulat 99.1 4.7E-09 1.6E-13 115.5 19.7 219 584-803 112-363 (378)
85 1qqe_A Vesicular transport pro 99.0 4.2E-09 1.4E-13 111.1 18.1 184 615-800 44-264 (292)
86 3q15_A PSP28, response regulat 99.0 2.4E-08 8.3E-13 109.8 24.5 226 515-771 109-365 (378)
87 1qqe_A Vesicular transport pro 99.0 2.2E-08 7.6E-13 105.5 20.9 215 522-779 32-277 (292)
88 3edt_B KLC 2, kinesin light ch 99.0 4.5E-09 1.5E-13 110.0 15.1 221 584-804 12-280 (283)
89 2pzi_A Probable serine/threoni 99.0 7.4E-09 2.5E-13 122.9 18.2 167 619-791 402-583 (681)
90 2yhc_A BAMD, UPF0169 lipoprote 98.9 2.6E-08 8.9E-13 100.4 18.6 179 609-807 5-215 (225)
91 3qky_A Outer membrane assembly 98.9 1.5E-08 5.1E-13 104.9 16.3 186 607-794 14-250 (261)
92 3qou_A Protein YBBN; thioredox 98.9 1.5E-08 5E-13 106.5 15.4 171 625-800 103-279 (287)
93 3mv2_B Coatomer subunit epsilo 98.9 2.6E-07 9E-12 95.2 24.2 174 627-805 85-282 (310)
94 3urz_A Uncharacterized protein 98.9 2.3E-08 8E-13 99.3 15.0 156 614-775 10-190 (208)
95 2vsy_A XCC0866; transferase, g 98.9 3.9E-08 1.3E-12 114.7 18.7 158 621-783 2-169 (568)
96 4ga2_A E3 SUMO-protein ligase 98.9 4.1E-09 1.4E-13 98.5 8.3 122 680-804 3-128 (150)
97 1hz4_A MALT regulatory protein 98.8 4.3E-07 1.5E-11 99.5 25.5 126 611-736 177-319 (373)
98 2pzi_A Probable serine/threoni 98.8 4.6E-08 1.6E-12 116.1 18.6 169 607-781 432-612 (681)
99 2fo7_A Synthetic consensus TPR 98.8 5E-08 1.7E-12 88.6 14.4 126 641-802 3-129 (136)
100 2fo7_A Synthetic consensus TPR 98.8 5.6E-08 1.9E-12 88.2 13.9 95 712-806 3-99 (136)
101 3edt_B KLC 2, kinesin light ch 98.8 2.6E-08 9E-13 104.0 13.1 223 550-772 13-282 (283)
102 2r5s_A Uncharacterized protein 98.8 2.1E-08 7.1E-13 96.7 11.1 74 729-802 93-170 (176)
103 3dra_A Protein farnesyltransfe 98.8 5.3E-07 1.8E-11 94.1 22.3 190 610-804 69-286 (306)
104 4gco_A Protein STI-1; structur 98.8 2.9E-08 9.8E-13 89.4 10.9 113 670-785 8-124 (126)
105 3mv2_B Coatomer subunit epsilo 98.8 3.5E-07 1.2E-11 94.3 20.2 240 518-779 24-290 (310)
106 4gco_A Protein STI-1; structur 98.8 3E-08 1E-12 89.3 11.0 100 705-804 7-109 (126)
107 3rjv_A Putative SEL1 repeat pr 98.8 3.1E-07 1.1E-11 91.4 18.9 171 627-806 5-198 (212)
108 3gyz_A Chaperone protein IPGC; 98.8 3.2E-08 1.1E-12 92.0 10.8 100 705-804 30-132 (151)
109 2vsy_A XCC0866; transferase, g 98.8 4.7E-08 1.6E-12 114.0 14.7 149 652-805 2-157 (568)
110 2vgx_A Chaperone SYCD; alterna 98.7 3.1E-08 1.1E-12 92.1 9.0 99 706-804 16-117 (148)
111 3urz_A Uncharacterized protein 98.7 3E-07 1E-11 91.2 16.5 159 640-804 5-185 (208)
112 3dra_A Protein farnesyltransfe 98.7 2.7E-06 9.1E-11 88.8 23.7 158 622-784 124-301 (306)
113 2c2l_A CHIP, carboxy terminus 98.7 3.1E-08 1.1E-12 103.6 9.0 190 607-804 3-198 (281)
114 2r5s_A Uncharacterized protein 98.7 2.1E-07 7.1E-12 89.6 14.0 157 609-770 7-172 (176)
115 3qou_A Protein YBBN; thioredox 98.6 7.6E-07 2.6E-11 93.3 18.1 170 528-735 107-280 (287)
116 2ifu_A Gamma-SNAP; membrane fu 98.6 6E-07 2.1E-11 95.2 17.3 219 551-797 4-253 (307)
117 2xcb_A PCRH, regulatory protei 98.6 2.4E-07 8.1E-12 85.5 11.7 99 706-804 13-114 (142)
118 2yhc_A BAMD, UPF0169 lipoprote 98.6 9.9E-07 3.4E-11 88.7 16.5 183 574-777 5-219 (225)
119 1hh8_A P67PHOX, NCF-2, neutrop 98.6 8.9E-07 3.1E-11 88.0 15.4 145 611-776 9-155 (213)
120 1hh8_A P67PHOX, NCF-2, neutrop 98.5 7.1E-07 2.4E-11 88.8 14.2 124 677-805 9-150 (213)
121 3rjv_A Putative SEL1 repeat pr 98.5 3E-06 1E-10 84.2 18.3 160 607-773 17-199 (212)
122 3u3w_A Transcriptional activat 98.5 4.6E-06 1.6E-10 87.7 20.8 159 645-803 81-264 (293)
123 3gyz_A Chaperone protein IPGC; 98.5 3.8E-07 1.3E-11 84.7 10.8 104 670-776 31-138 (151)
124 2vgx_A Chaperone SYCD; alterna 98.5 2.3E-07 7.9E-12 86.2 9.4 115 662-781 10-128 (148)
125 1na0_A Designed protein CTPR3; 98.5 7.6E-07 2.6E-11 79.4 12.0 114 675-790 10-125 (125)
126 2uy1_A Cleavage stimulation fa 98.5 2E-05 6.8E-10 89.0 26.4 125 640-770 287-412 (493)
127 1a17_A Serine/threonine protei 98.5 8.7E-07 3E-11 83.9 12.9 125 677-804 16-145 (166)
128 2vyi_A SGTA protein; chaperone 98.5 8E-07 2.8E-11 80.0 12.1 117 674-793 12-131 (131)
129 2lni_A Stress-induced-phosphop 98.5 7.4E-07 2.5E-11 80.6 11.5 114 675-791 17-133 (133)
130 2qfc_A PLCR protein; TPR, HTH, 98.5 3E-06 1E-10 89.1 17.9 162 641-802 77-263 (293)
131 3upv_A Heat shock protein STI1 98.5 6E-07 2.1E-11 80.7 10.8 94 711-804 5-100 (126)
132 2ifu_A Gamma-SNAP; membrane fu 98.5 6E-07 2.1E-11 95.2 12.5 196 586-803 4-222 (307)
133 2e2e_A Formate-dependent nitri 98.5 8.7E-07 3E-11 85.2 12.6 115 687-804 23-143 (177)
134 1p5q_A FKBP52, FK506-binding p 98.5 4.9E-07 1.7E-11 97.1 11.7 142 638-802 146-291 (336)
135 4f3v_A ESX-1 secretion system 98.5 1.5E-06 5.3E-11 88.3 14.5 180 620-804 18-236 (282)
136 1wao_1 Serine/threonine protei 98.4 7.1E-07 2.4E-11 100.7 11.9 113 617-734 15-134 (477)
137 1wao_1 Serine/threonine protei 98.4 7.2E-07 2.5E-11 100.7 11.8 114 684-800 16-134 (477)
138 2e2e_A Formate-dependent nitri 98.4 6.3E-07 2.2E-11 86.2 9.5 128 650-782 21-155 (177)
139 3q7a_A Farnesyltransferase alp 98.4 1.1E-05 3.8E-10 84.9 19.2 216 548-804 64-330 (349)
140 2xcb_A PCRH, regulatory protei 98.4 5E-07 1.7E-11 83.3 7.8 108 675-785 19-129 (142)
141 4f3v_A ESX-1 secretion system 98.4 1.8E-06 6.3E-11 87.7 12.0 136 642-782 105-247 (282)
142 3u3w_A Transcriptional activat 98.4 1.9E-05 6.5E-10 82.9 20.3 158 614-771 81-266 (293)
143 2fbn_A 70 kDa peptidylprolyl i 98.4 2.8E-07 9.7E-12 90.6 5.3 171 613-804 9-185 (198)
144 2qfc_A PLCR protein; TPR, HTH, 98.3 2.3E-05 7.7E-10 82.3 20.1 166 540-735 77-262 (293)
145 3dss_A Geranylgeranyl transfer 98.3 5.4E-05 1.9E-09 79.3 22.1 190 589-785 90-318 (331)
146 2uy1_A Cleavage stimulation fa 98.3 0.0004 1.4E-08 78.3 31.1 201 455-666 197-411 (493)
147 3gw4_A Uncharacterized protein 98.3 1E-05 3.5E-10 79.3 15.4 151 620-770 4-175 (203)
148 1elw_A TPR1-domain of HOP; HOP 98.3 6.2E-06 2.1E-10 72.4 12.3 107 677-786 7-116 (118)
149 3upv_A Heat shock protein STI1 98.3 3.7E-06 1.3E-10 75.4 10.9 107 677-786 7-122 (126)
150 1hxi_A PEX5, peroxisome target 98.3 1.3E-06 4.5E-11 77.7 7.6 93 712-804 19-113 (121)
151 3q49_B STIP1 homology and U bo 98.3 4.4E-06 1.5E-10 76.1 11.4 95 710-804 9-105 (137)
152 1a17_A Serine/threonine protei 98.3 8.3E-06 2.8E-10 77.0 13.6 89 612-702 17-109 (166)
153 3sz7_A HSC70 cochaperone (SGT) 98.3 4.5E-06 1.5E-10 79.0 11.6 109 674-785 11-122 (164)
154 4gcn_A Protein STI-1; structur 98.3 2.9E-06 1E-10 76.2 9.6 93 712-804 10-111 (127)
155 2kck_A TPR repeat; tetratricop 98.3 3.1E-06 1.1E-10 73.6 9.5 95 710-804 6-105 (112)
156 3sz7_A HSC70 cochaperone (SGT) 98.2 3.7E-06 1.3E-10 79.5 10.4 95 710-804 11-107 (164)
157 1elw_A TPR1-domain of HOP; HOP 98.2 5.9E-06 2E-10 72.5 11.0 95 710-804 4-100 (118)
158 3gw4_A Uncharacterized protein 98.2 2.1E-05 7.1E-10 77.1 16.1 155 607-773 25-198 (203)
159 3dss_A Geranylgeranyl transfer 98.2 9.7E-05 3.3E-09 77.4 21.7 176 624-804 90-303 (331)
160 2dba_A Smooth muscle cell asso 98.2 9.7E-06 3.3E-10 74.7 12.8 115 638-788 27-145 (148)
161 1dce_A Protein (RAB geranylger 98.2 2.2E-05 7.5E-10 90.1 18.2 168 622-794 43-244 (567)
162 1na0_A Designed protein CTPR3; 98.2 1.2E-05 4.2E-10 71.3 12.3 95 710-804 9-105 (125)
163 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 6.2E-06 2.1E-10 92.6 12.4 145 638-804 267-414 (457)
164 2lni_A Stress-induced-phosphop 98.2 1.1E-05 3.7E-10 72.8 11.9 95 710-804 16-112 (133)
165 3q7a_A Farnesyltransferase alp 98.2 0.00017 5.9E-09 75.8 22.3 226 518-784 65-345 (349)
166 3rkv_A Putative peptidylprolyl 98.2 8.8E-06 3E-10 76.7 11.3 131 674-851 11-147 (162)
167 2vyi_A SGTA protein; chaperone 98.2 1.8E-05 6.1E-10 70.9 12.8 116 638-758 11-130 (131)
168 2hr2_A Hypothetical protein; a 98.2 2.5E-06 8.7E-11 78.1 6.9 34 746-779 106-139 (159)
169 2c2l_A CHIP, carboxy terminus 98.2 7.5E-06 2.6E-10 85.3 11.3 149 638-801 3-160 (281)
170 4gcn_A Protein STI-1; structur 98.1 1.7E-05 5.8E-10 71.1 11.8 61 640-702 9-70 (127)
171 2fbn_A 70 kDa peptidylprolyl i 98.1 3.6E-06 1.2E-10 82.5 7.6 143 582-730 13-176 (198)
172 2dba_A Smooth muscle cell asso 98.1 2.2E-05 7.4E-10 72.3 12.6 95 710-804 28-127 (148)
173 3q49_B STIP1 homology and U bo 98.1 9.1E-06 3.1E-10 73.9 9.6 99 673-774 8-109 (137)
174 1p5q_A FKBP52, FK506-binding p 98.1 1.4E-05 4.9E-10 85.6 12.2 124 607-735 146-290 (336)
175 2hr2_A Hypothetical protein; a 98.1 2.8E-06 9.6E-11 77.8 5.6 108 675-804 12-130 (159)
176 2xev_A YBGF; tetratricopeptide 98.1 1.3E-05 4.3E-10 72.0 10.0 89 716-804 8-104 (129)
177 3rkv_A Putative peptidylprolyl 98.1 4.2E-06 1.5E-10 78.9 7.0 124 638-787 10-143 (162)
178 2kck_A TPR repeat; tetratricop 98.1 1.4E-05 4.9E-10 69.3 9.6 98 676-776 8-111 (112)
179 1hxi_A PEX5, peroxisome target 98.1 1.1E-05 3.9E-10 71.5 9.0 97 677-776 20-119 (121)
180 1elr_A TPR2A-domain of HOP; HO 98.0 2.2E-05 7.6E-10 70.3 10.2 93 712-804 6-107 (131)
181 2if4_A ATFKBP42; FKBP-like, al 98.0 1.7E-05 5.8E-10 85.1 10.3 146 639-804 179-327 (338)
182 1ihg_A Cyclophilin 40; ppiase 98.0 2E-05 6.7E-10 85.5 10.5 137 639-797 223-362 (370)
183 1elr_A TPR2A-domain of HOP; HO 98.0 2.4E-05 8.2E-10 70.0 9.5 114 640-787 5-123 (131)
184 2xev_A YBGF; tetratricopeptide 98.0 8.5E-05 2.9E-09 66.4 13.0 105 682-786 10-120 (129)
185 3ro3_A PINS homolog, G-protein 97.9 4.6E-05 1.6E-09 71.1 11.0 136 640-803 10-156 (164)
186 2if4_A ATFKBP42; FKBP-like, al 97.9 1.4E-05 4.7E-10 85.8 7.8 113 675-804 180-292 (338)
187 3k9i_A BH0479 protein; putativ 97.9 8E-06 2.7E-10 72.1 4.6 82 723-804 3-89 (117)
188 3lvg_A Clathrin heavy chain 1; 97.9 8.3E-06 2.8E-10 86.3 5.3 463 96-696 52-534 (624)
189 3k9i_A BH0479 protein; putativ 97.9 1E-05 3.5E-10 71.3 5.1 71 711-781 28-100 (117)
190 3ro3_A PINS homolog, G-protein 97.8 6.1E-05 2.1E-09 70.3 10.0 128 608-735 9-154 (164)
191 4b4t_Q 26S proteasome regulato 97.8 4.1E-05 1.4E-09 85.4 9.8 186 617-802 13-242 (434)
192 2l6j_A TPR repeat-containing p 97.8 2.9E-05 9.8E-10 67.4 6.4 89 710-798 4-100 (111)
193 4b4t_Q 26S proteasome regulato 97.7 0.002 7E-08 71.5 22.0 252 516-768 13-321 (434)
194 1ihg_A Cyclophilin 40; ppiase 97.7 0.00011 3.6E-09 79.7 10.9 113 674-804 223-335 (370)
195 3n71_A Histone lysine methyltr 97.7 7.6E-05 2.6E-09 83.4 9.9 64 744-807 395-466 (490)
196 1kt0_A FKBP51, 51 kDa FK506-bi 97.7 0.00027 9.1E-09 79.2 14.1 124 608-736 268-412 (457)
197 1na3_A Designed protein CTPR2; 97.7 0.00011 3.7E-09 60.8 8.2 81 710-790 9-91 (91)
198 3ma5_A Tetratricopeptide repea 97.6 0.00014 4.9E-09 61.7 8.2 66 739-804 4-69 (100)
199 3bee_A Putative YFRE protein; 97.5 0.00056 1.9E-08 56.8 10.4 68 739-806 3-73 (93)
200 2kat_A Uncharacterized protein 97.5 0.00013 4.4E-09 63.8 6.7 77 728-804 3-81 (115)
201 2l6j_A TPR repeat-containing p 97.5 9.6E-05 3.3E-09 64.0 5.6 95 638-737 3-105 (111)
202 1zu2_A Mitochondrial import re 97.5 5.2E-05 1.8E-09 69.2 3.7 82 723-804 15-119 (158)
203 1zu2_A Mitochondrial import re 97.5 7.3E-05 2.5E-09 68.2 4.6 103 650-778 13-127 (158)
204 1dce_A Protein (RAB geranylger 97.5 0.001 3.5E-08 76.2 15.0 147 651-802 40-218 (567)
205 3lvg_A Clathrin heavy chain 1; 97.4 0.00013 4.3E-09 77.5 5.2 457 27-595 53-534 (624)
206 1klx_A Cysteine rich protein B 97.3 0.0008 2.8E-08 61.0 9.2 110 653-771 9-126 (138)
207 3n71_A Histone lysine methyltr 97.3 0.00074 2.5E-08 75.4 10.2 90 744-851 353-450 (490)
208 3qwp_A SET and MYND domain-con 97.2 0.00096 3.3E-08 73.3 10.7 89 744-850 331-427 (429)
209 3ma5_A Tetratricopeptide repea 97.2 0.0014 4.9E-08 55.3 8.7 64 637-702 5-69 (100)
210 2kat_A Uncharacterized protein 97.1 0.00085 2.9E-08 58.4 7.2 64 637-702 17-81 (115)
211 3ly7_A Transcriptional activat 97.1 0.007 2.4E-07 63.5 14.6 137 636-800 191-334 (372)
212 1na3_A Designed protein CTPR2; 97.1 0.0023 8E-08 52.5 9.2 64 741-804 8-71 (91)
213 1klx_A Cysteine rich protein B 97.1 0.0041 1.4E-07 56.2 11.5 112 688-807 9-128 (138)
214 3qww_A SET and MYND domain-con 96.9 0.0026 8.7E-08 69.8 10.3 116 686-844 310-432 (433)
215 3ly7_A Transcriptional activat 96.7 0.022 7.6E-07 59.7 14.7 109 673-806 193-307 (372)
216 2kc7_A BFR218_protein; tetratr 96.7 0.0042 1.4E-07 52.1 7.7 64 716-779 6-72 (99)
217 2kc7_A BFR218_protein; tetratr 96.5 0.0055 1.9E-07 51.3 7.4 57 748-804 6-63 (99)
218 3qwp_A SET and MYND domain-con 96.3 0.021 7.1E-07 62.7 12.0 90 645-734 293-395 (429)
219 1pc2_A Mitochondria fission pr 96.3 0.011 3.7E-07 53.2 7.8 63 741-803 31-98 (152)
220 1wy6_A Hypothetical protein ST 96.1 0.42 1.4E-05 41.2 15.9 142 649-809 17-158 (172)
221 3mkq_A Coatomer beta'-subunit; 95.9 0.13 4.6E-06 62.0 18.2 103 616-736 660-762 (814)
222 3qww_A SET and MYND domain-con 95.9 0.025 8.5E-07 62.0 10.3 85 651-735 310-407 (433)
223 2v5f_A Prolyl 4-hydroxylase su 95.6 0.03 1E-06 47.4 7.5 44 740-783 44-87 (104)
224 1pc2_A Mitochondria fission pr 95.3 0.087 3E-06 47.4 9.7 94 655-781 14-110 (152)
225 3mkq_A Coatomer beta'-subunit; 95.2 0.16 5.6E-06 61.2 15.2 152 620-800 611-773 (814)
226 3u64_A Protein TP_0956; tetrat 95.1 0.048 1.7E-06 54.7 8.0 86 727-812 180-276 (301)
227 3bee_A Putative YFRE protein; 95.0 0.19 6.4E-06 41.3 10.2 64 637-702 4-71 (93)
228 3u64_A Protein TP_0956; tetrat 95.0 0.25 8.6E-06 49.6 12.6 112 621-737 134-267 (301)
229 1qsa_A Protein (soluble lytic 94.2 9.5 0.00032 43.4 26.0 250 511-770 76-347 (618)
230 3mkq_B Coatomer subunit alpha; 94.1 1 3.5E-05 41.5 13.8 129 616-768 13-141 (177)
231 1nzn_A CGI-135 protein, fissio 93.7 0.24 8.3E-06 42.7 8.2 97 682-780 9-112 (126)
232 1y8m_A FIS1; mitochondria, unk 93.1 1.3 4.4E-05 38.9 11.9 71 707-777 36-112 (144)
233 4gns_B Protein CSD3, chitin bi 92.9 0.28 9.5E-06 57.0 9.7 54 749-802 344-397 (754)
234 3mkq_B Coatomer subunit alpha; 92.7 0.69 2.4E-05 42.6 10.1 71 718-799 13-83 (177)
235 1nzn_A CGI-135 protein, fissio 92.6 1.2 4.2E-05 38.3 10.9 88 651-741 13-106 (126)
236 2v5f_A Prolyl 4-hydroxylase su 91.2 1.2 4E-05 37.2 9.4 59 746-804 9-74 (104)
237 3ffl_A Anaphase-promoting comp 88.6 2.4 8.2E-05 38.4 9.5 29 711-739 123-151 (167)
238 4h7y_A Dual specificity protei 88.4 1.7 5.7E-05 38.5 8.0 54 724-777 74-129 (161)
239 3o48_A Mitochondria fission 1 87.4 1.7 5.8E-05 37.6 7.3 71 707-777 37-113 (134)
240 3lpz_A GET4 (YOR164C homolog); 86.8 28 0.00095 35.7 17.3 134 203-349 38-182 (336)
241 4ady_A RPN2, 26S proteasome re 85.2 68 0.0023 38.1 26.9 125 614-743 496-627 (963)
242 4b4t_P 26S proteasome regulato 85.0 47 0.0016 36.0 21.3 150 37-191 26-203 (445)
243 1wy6_A Hypothetical protein ST 84.7 19 0.00065 31.2 12.6 84 620-706 73-156 (172)
244 1zbp_A Hypothetical protein VP 84.6 6.8 0.00023 38.6 11.0 124 647-777 5-135 (273)
245 4h7y_A Dual specificity protei 84.3 8 0.00027 34.3 10.0 100 635-737 9-121 (161)
246 2qx5_A Nucleoporin NIC96; mRNA 83.6 59 0.002 37.0 19.9 83 544-637 300-385 (661)
247 2qx5_A Nucleoporin NIC96; mRNA 80.6 84 0.0029 35.8 22.1 82 443-535 300-384 (661)
248 2ff4_A Probable regulatory pro 80.5 8.7 0.0003 41.0 11.2 69 642-712 174-247 (388)
249 3txn_A 26S proteasome regulato 80.1 11 0.00036 40.1 11.4 163 610-799 21-204 (394)
250 1y8m_A FIS1; mitochondria, unk 79.5 32 0.0011 30.2 12.9 69 670-741 35-109 (144)
251 2uwj_G Type III export protein 79.3 14 0.00046 29.9 8.7 60 616-678 47-106 (115)
252 2p58_C Putative type III secre 79.0 14 0.00049 29.8 8.7 59 616-677 48-106 (116)
253 4fhn_B Nucleoporin NUP120; pro 79.0 15 0.00052 45.6 14.3 142 578-727 817-988 (1139)
254 3o48_A Mitochondria fission 1 78.2 18 0.00063 31.2 10.1 71 669-742 35-111 (134)
255 3ffl_A Anaphase-promoting comp 75.7 15 0.0005 33.3 9.2 65 24-89 16-90 (167)
256 2ff4_A Probable regulatory pro 75.1 5.2 0.00018 42.8 7.5 67 745-811 174-245 (388)
257 4gns_B Protein CSD3, chitin bi 73.7 11 0.00038 43.7 10.1 50 649-700 347-397 (754)
258 2hgo_A CASSIICOLIN; toxin, dis 72.8 0.84 2.9E-05 25.3 0.2 17 932-948 7-25 (27)
259 4b4t_P 26S proteasome regulato 72.5 1.1E+02 0.0038 33.0 21.1 95 642-736 140-244 (445)
260 2uwj_G Type III export protein 69.0 22 0.00074 28.8 7.5 74 180-257 21-94 (115)
261 2p58_C Putative type III secre 69.0 23 0.00078 28.7 7.7 74 180-257 22-95 (116)
262 3ltm_A Alpha-REP4; protein eng 68.2 79 0.0027 29.6 18.4 89 607-700 94-182 (211)
263 4ady_A RPN2, 26S proteasome re 67.2 2.1E+02 0.0071 34.1 46.1 305 415-725 383-721 (963)
264 2wpv_A GET4, UPF0363 protein Y 67.0 1.1E+02 0.0039 31.0 24.3 166 512-703 38-217 (312)
265 1qsa_A Protein (soluble lytic 64.8 1.9E+02 0.0065 32.7 36.6 134 39-180 17-151 (618)
266 3lpz_A GET4 (YOR164C homolog); 63.6 1.4E+02 0.0047 30.7 27.5 165 512-702 40-215 (336)
267 4fhn_B Nucleoporin NUP120; pro 63.3 76 0.0026 39.3 15.4 53 713-765 902-961 (1139)
268 1v54_E Cytochrome C oxidase po 62.8 51 0.0018 26.8 8.7 63 654-718 25-87 (109)
269 1v54_E Cytochrome C oxidase po 61.9 29 0.001 28.2 7.1 60 737-808 40-99 (109)
270 1zbp_A Hypothetical protein VP 58.0 30 0.001 34.1 8.1 57 720-776 7-65 (273)
271 4b4t_R RPN7, 26S proteasome re 57.1 34 0.0012 37.0 9.5 97 609-705 132-239 (429)
272 1ews_A RK-1 defensin, alpha-de 56.8 1.9 6.6E-05 24.8 -0.3 14 938-951 2-15 (32)
273 3ltj_A Alpharep-4; protein eng 54.1 1.4E+02 0.0046 27.6 17.7 141 301-451 26-166 (201)
274 2y69_E Cytochrome C oxidase su 50.4 64 0.0022 27.9 7.7 62 655-718 69-130 (152)
275 1wdy_A 2-5A-dependent ribonucl 49.6 1.5E+02 0.0052 28.9 12.7 49 279-327 190-240 (285)
276 3mv2_A Coatomer subunit alpha; 49.4 99 0.0034 31.3 10.4 33 742-774 207-239 (325)
277 1wdy_A 2-5A-dependent ribonucl 48.1 2E+02 0.0069 27.9 14.4 15 314-328 113-127 (285)
278 3ltj_A Alpharep-4; protein eng 46.4 1.8E+02 0.0061 26.8 19.6 80 635-723 117-196 (201)
279 3eiq_C Programmed cell death p 46.4 21 0.00073 37.1 5.3 64 510-573 220-288 (358)
280 3ltm_A Alpha-REP4; protein eng 44.5 2E+02 0.0067 26.7 19.2 76 606-685 124-199 (211)
281 2y69_E Cytochrome C oxidase su 43.8 74 0.0025 27.5 7.1 62 735-808 81-142 (152)
282 3esl_A Checkpoint serine/threo 42.9 2.1E+02 0.0073 26.7 13.1 86 744-855 82-169 (202)
283 2nsz_A Programmed cell death p 42.8 41 0.0014 29.1 5.8 64 102-166 11-79 (129)
284 4b4t_R RPN7, 26S proteasome re 42.6 68 0.0023 34.5 9.0 96 641-736 133-234 (429)
285 2l0z_A Glycoprotein G2; zinc-b 42.3 8.3 0.00028 24.9 0.9 19 927-945 11-30 (42)
286 3eiq_C Programmed cell death p 41.8 1.3E+02 0.0043 31.3 10.3 61 612-672 221-286 (358)
287 1n11_A Ankyrin; clathrin, BAND 41.5 3.4E+02 0.012 28.6 15.3 18 311-328 217-234 (437)
288 1k1a_A B-cell lymphoma 3-encod 41.1 1.2E+02 0.0042 28.7 10.1 50 279-328 17-68 (241)
289 2wpv_A GET4, UPF0363 protein Y 39.9 3.1E+02 0.011 27.7 21.5 169 610-804 35-216 (312)
290 1n11_A Ankyrin; clathrin, BAND 37.9 3.8E+02 0.013 28.2 14.4 17 312-328 119-135 (437)
291 3kea_A K1L; tropism, ANK repea 37.2 2.2E+02 0.0075 28.1 11.5 20 309-328 65-84 (285)
292 2zu6_B Programmed cell death p 34.3 98 0.0034 31.4 7.9 247 338-602 7-270 (307)
293 3eu9_A Huntingtin-interacting 34.2 1.5E+02 0.0053 27.9 9.5 16 313-328 116-131 (240)
294 2ion_A PDCD4, programmed cell 33.0 42 0.0014 30.0 4.4 64 102-166 13-81 (152)
295 1k1a_A B-cell lymphoma 3-encod 30.6 1.6E+02 0.0055 27.9 8.9 40 290-329 131-173 (241)
296 3bqo_A Telomeric repeat-bindin 29.8 2.5E+02 0.0087 26.0 8.8 62 726-787 94-162 (211)
297 2dl1_A Spartin; SPG20, MIT, st 29.6 2E+02 0.0069 24.0 7.4 36 760-804 47-82 (116)
298 3kea_A K1L; tropism, ANK repea 28.6 2.5E+02 0.0087 27.6 10.2 21 310-330 133-153 (285)
299 3eu9_A Huntingtin-interacting 28.5 2E+02 0.0069 27.0 9.2 15 211-225 117-131 (240)
300 3b7b_A Euchromatic histone-lys 26.9 3.9E+02 0.013 24.9 12.0 21 310-330 148-168 (237)
301 1d0d_A TAP, anticoagulant prot 26.5 11 0.00037 25.7 -0.5 16 933-948 25-40 (60)
302 2nsz_A Programmed cell death p 24.5 3E+02 0.01 23.4 8.3 62 611-672 10-76 (129)
303 3mv2_A Coatomer subunit alpha; 24.5 5.6E+02 0.019 25.9 12.8 122 447-602 124-256 (325)
304 3b34_A Aminopeptidase N; prote 24.1 3.5E+02 0.012 32.1 11.4 145 643-797 703-862 (891)
305 2d2s_A Exocyst complex compone 23.5 1.9E+02 0.0065 27.9 7.5 86 646-735 25-116 (235)
306 3hra_A Ankyrin repeat family p 23.2 3.8E+02 0.013 24.1 9.8 19 107-125 11-29 (201)
307 4b4t_S RPN3, 26S proteasome re 22.4 3.4E+02 0.012 29.7 9.8 24 677-700 234-257 (523)
308 3syn_E ATP-binding protein YLX 22.3 47 0.0016 17.7 1.5 17 789-805 3-19 (23)
309 2d2s_A Exocyst complex compone 22.0 1.6E+02 0.0056 28.3 6.7 22 341-362 25-46 (235)
310 4a1g_A Mitotic checkpoint seri 21.9 4.2E+02 0.014 23.4 9.1 48 761-808 84-133 (152)
311 3twe_A Alpha4H; unknown functi 21.6 1.1E+02 0.0037 17.0 2.9 17 835-851 3-19 (27)
312 3hra_A Ankyrin repeat family p 21.5 3.3E+02 0.011 24.6 8.9 18 210-227 12-29 (201)
313 1ya0_A SMG-7 transcript varian 21.5 1.2E+02 0.0039 33.4 6.1 42 754-795 164-205 (497)
314 2k0q_A Putative uncharacterize 21.2 28 0.00097 25.7 0.8 23 921-943 8-30 (74)
315 2lo3_A SAGA-associated factor 20.5 24 0.00081 23.1 0.2 12 901-912 16-27 (44)
316 1wj6_A KIAA0049 protein, RSGI 20.1 1.9E+02 0.0065 23.4 5.3 31 816-846 19-49 (101)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.1e-40 Score=393.40 Aligned_cols=495 Identities=9% Similarity=-0.043 Sum_probs=357.8
Q ss_pred hhccCChHHHHHHhccCCCCCeecHHHHHHHHHcCCCchHHHHHHHHhhhccCCCCCChhhHHHHHHhhhcCCCchHHHH
Q 037236 210 YGKCAFVEEMVKLFEVMPERNLVSWNSIICGSSENGFSCESFDLLIKMMGCEEGFIPDVATVVTVLPVCAGEGNVDLGIL 289 (953)
Q Consensus 210 ~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 289 (953)
+.++|.+..+...|+.++.+++..|+.++..|.+.|++++|+.+|++| . +..||..++..+..+|...|+++.|..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~--~--~~~p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKV--L--DITGNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHH--H--HHHCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHH--H--hhCCCchHHHHHHHHHHHcCcHHHHHH
Confidence 456788888899999999899999999999999999999999999999 4 466888999999999999999999999
Q ss_pred HHHHHHHhCCCCCchHHHHHHHhhHhcCChhHHHHHHhcCCCC-------------------CcccHHHHHHHHHcCCCh
Q 037236 290 VHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFDKNNNK-------------------NVVSWNTIIGAFSMAGDV 350 (953)
Q Consensus 290 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-------------------d~~~~~~li~~~~~~g~~ 350 (953)
++..+... +++..+++.++.+|.++|++++|+++|+++... ++.+|+.++.+|.+.|++
T Consensus 139 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 216 (597)
T 2xpi_A 139 LLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF 216 (597)
T ss_dssp HHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCH
Confidence 99987644 678999999999999999999999999964433 478999999999999999
Q ss_pred hHHHHHHHHHHhccCCCCCchh-hHHHHHHHhccccchHH--HHHH-HHHHHHcCCCCchhHHHHHHHHHHhcCCcccHH
Q 037236 351 CGTFDLLRKMQMKEEEMKPNEV-TVLNVLTSCSEKSELLS--LKEL-HGYSLRHGFDNDELVANAFVVAYAKCGSEISAE 426 (953)
Q Consensus 351 ~~A~~l~~~m~~~g~~~~p~~~-t~~~ll~~~~~~~~~~~--a~~i-~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 426 (953)
++|+++|++|.+.+ |+.. .+..+...+...+.... ...+ +..+...+..+...+++.++.+|.+.|++++|.
T Consensus 217 ~~A~~~~~~~~~~~----p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 292 (597)
T 2xpi_A 217 DRAKECYKEALMVD----AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAE 292 (597)
T ss_dssp HHHHHHHHHHHHHC----TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhC----chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHH
Confidence 99999999998853 5443 33333333332222211 1111 444444444555667777788888999999999
Q ss_pred HHhccCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccchhhHHHHHHHHhCCC
Q 037236 427 NVFHGMDS--RTVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLE 504 (953)
Q Consensus 427 ~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~ 504 (953)
++|+++.. +++.+|+.++.+|.+.|++++|+++|++|.+.+ +.+..++..++
T Consensus 293 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~------------------------- 346 (597)
T 2xpi_A 293 DYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHL------------------------- 346 (597)
T ss_dssp HHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHH-------------------------
T ss_pred HHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHH-------------------------
Confidence 99988876 688889999999999999999999999887654 22344444444
Q ss_pred CchhhHhhHHHHHHhcCChhHHHHHHHhccc---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 037236 505 GDSFTGISLLSLYMHCEKSSSARVLFDEMED---KSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILS 581 (953)
Q Consensus 505 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 581 (953)
.+|.+.|++++|.++|+++.+ .+..+|+.++..|.+.|++++|+++|+++.+. .|+
T Consensus 347 ----------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~--------- 405 (597)
T 2xpi_A 347 ----------ASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM--DPQ--------- 405 (597)
T ss_dssp ----------HHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT---------
T ss_pred ----------HHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCC---------
Confidence 444444555555555544432 23445555555566666666666666555542 221
Q ss_pred HhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHH
Q 037236 582 ACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEA 658 (953)
Q Consensus 582 a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A 658 (953)
+..+++.++.+|.+.|++++|.++|+++. +.+..+|+.++.+|.+.|++++|
T Consensus 406 -------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 460 (597)
T 2xpi_A 406 -------------------------FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLA 460 (597)
T ss_dssp -------------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHH
T ss_pred -------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHH
Confidence 34455666666666666666666666554 34667778888888888888888
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc---CCCCC--hhHHHHHHHHHhhcCCHHHHHHH
Q 037236 659 IELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLH---AVKPK--LEHYACVVDMLGRAGKLDDAFKL 732 (953)
Q Consensus 659 ~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~--~~~~~~lv~~l~~~g~~~eA~~~ 732 (953)
+++|++|.+. .| +..+|..++.+|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.+.
T Consensus 461 ~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~ 538 (597)
T 2xpi_A 461 NEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDA 538 (597)
T ss_dssp HHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 8888888774 34 67778888888888888888888888886543 55676 67888888888888888888888
Q ss_pred HHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 037236 733 IIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAG 788 (953)
Q Consensus 733 ~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 788 (953)
++++.. ++++.+|..++.+|...|++++|...++++++++|+++.++..|+++|..
T Consensus 539 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 539 LNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 887653 44788999999999999999999999999999999999999999998864
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.7e-39 Score=385.56 Aligned_cols=479 Identities=9% Similarity=-0.028 Sum_probs=401.9
Q ss_pred hhHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHhccCCCCCchhhHHHHHHHhccccchHHHH
Q 037236 312 MYAKCGFLSEAQILFDKNNNKNVVSWNTIIGAFSMAGDVCGTFDLLRKMQMKEEEMKPNEVTVLNVLTSCSEKSELLSLK 391 (953)
Q Consensus 312 ~~~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~p~~~t~~~ll~~~~~~~~~~~a~ 391 (953)
.+.+.|.+..+...|+.++.+++..|+.++.+|.+.|++++|+.+|++|.. ..|+..++..+..++...|+++.|.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~----~~p~~~~~~~l~~~~~~~g~~~~A~ 137 (597)
T 2xpi_A 62 NTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD----ITGNPNDAFWLAQVYCCTGDYARAK 137 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HHCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh----hCCCchHHHHHHHHHHHcCcHHHHH
Confidence 355677888888999999989999999999999999999999999999985 5688899999999999999999999
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCCcccHHHHhccCCCC-------------------ChhhHHHHHHHHHhcCC
Q 037236 392 ELHGYSLRHGFDNDELVANAFVVAYAKCGSEISAENVFHGMDSR-------------------TVSSWNALICGYAQNGD 452 (953)
Q Consensus 392 ~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-------------------~~~~~~~li~~~~~~g~ 452 (953)
.++..+... +++..+++.++.+|.++|++++|.++|+++... ++.+|+.++.+|.+.|+
T Consensus 138 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 215 (597)
T 2xpi_A 138 CLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSN 215 (597)
T ss_dssp HHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCC
Confidence 999987543 678899999999999999999999999965433 47899999999999999
Q ss_pred hHHHHHHHHHhhhCCCCCCcc-hHHHHHHhhccccccc--hhhHH-HHHHHHhCCCCchhhHhhHHHHHHhcCChhHHHH
Q 037236 453 HLKALDYFLQMTHSDLEPDLF-SIGSLILACTHLKSLH--RGKEI-HGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARV 528 (953)
Q Consensus 453 ~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~--~a~~i-~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 528 (953)
+++|+++|++|.+.+ |+.. .+..+...+...+..+ .+..+ +..+...+..+...+++.++.+|.+.|++++|.+
T Consensus 216 ~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 293 (597)
T 2xpi_A 216 FDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAED 293 (597)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHH
Confidence 999999999999853 4433 3444444333332222 12222 4455555666677788889999999999999999
Q ss_pred HHHhccc--CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCC
Q 037236 529 LFDEMED--KSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTN 606 (953)
Q Consensus 529 ~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~ 606 (953)
+|+++.+ ++..+|+.++.+|.+.|++++|+++|++|.+.+ +.+..++..++.++.+.|+.++|.+++..+.+.. +.
T Consensus 294 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 371 (597)
T 2xpi_A 294 YLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PE 371 (597)
T ss_dssp HHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cc
Confidence 9999987 789999999999999999999999999999875 3477889999999999999999999999998654 34
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 037236 607 DAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILM 682 (953)
Q Consensus 607 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~ 682 (953)
+..+++.++.+|.++|++++|.++|+++. +.+..+|+.++.+|.+.|++++|+++|++|.+. .| +..++..++.
T Consensus 372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~ 449 (597)
T 2xpi_A 372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL--FQGTHLPYLFLGM 449 (597)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TTTCSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHH
Confidence 78899999999999999999999999875 467889999999999999999999999999985 45 7899999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC--hhHHHHHHHHHH
Q 037236 683 ACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEM-------PEEAD--AGIWSSLLRSCR 753 (953)
Q Consensus 683 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~-------~~~~~--~~~~~~ll~~~~ 753 (953)
+|.+.|++++|.++|+++.+.. ..+...|..++.+|.+.|++++|+++|+++ +..|+ ..+|..++.+|.
T Consensus 450 ~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~ 527 (597)
T 2xpi_A 450 QHMQLGNILLANEYLQSSYALF--QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYR 527 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHH
Confidence 9999999999999999998742 234788999999999999999999999987 33566 679999999999
Q ss_pred hcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 754 TYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 754 ~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
.+|++++|...++++++++|+++.+|..++++|...|+|++|.+.++++.+
T Consensus 528 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 528 KLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999988876
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=2.5e-24 Score=240.01 Aligned_cols=370 Identities=12% Similarity=0.107 Sum_probs=269.3
Q ss_pred HHHHHcCCChhHHHHHHHHHHhccCCCCCchhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcC
Q 037236 341 IGAFSMAGDVCGTFDLLRKMQMKEEEMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLRHGFDNDELVANAFVVAYAKCG 420 (953)
Q Consensus 341 i~~~~~~g~~~~A~~l~~~m~~~g~~~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g 420 (953)
...+.+.|++++|++.+.++.+. .|+.. ..+..+...+.+.|
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~----~p~~~----------------------------------~~~~~l~~~~~~~~ 47 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ----EPDNT----------------------------------GVLLLLSSIHFQCR 47 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH----CTTCH----------------------------------HHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh----CCCCH----------------------------------HHHHHHHHHHHHcC
Confidence 34556677888888888777653 34432 22233333444444
Q ss_pred CcccHHHHhccCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCc-chHHHHHHhhccccccchhhHHHH
Q 037236 421 SEISAENVFHGMD---SRTVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDL-FSIGSLILACTHLKSLHRGKEIHG 496 (953)
Q Consensus 421 ~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~i~~ 496 (953)
++++|...++... ..+..+|..+...|.+.|++++|+..|+++... .|+. .++..+..++...|+++.|.+.+.
T Consensus 48 ~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 125 (388)
T 1w3b_A 48 RLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYV 125 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4444444443321 224556666677777777777777777776653 2332 345555555555666666666665
Q ss_pred HHHHhCCCCchhhHhhHHHHHHhcCChhHHHHHHHhccc---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCh
Q 037236 497 FVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMED---KSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCE 573 (953)
Q Consensus 497 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 573 (953)
.+++..+. +...+..+...|...|++++|.+.|+++.+ .+..+|+.+...|.+.|++++|+..|+++.+. .|+
T Consensus 126 ~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~- 201 (388)
T 1w3b_A 126 SALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--DPN- 201 (388)
T ss_dssp HHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTT-
T ss_pred HHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC-
Confidence 55554322 334455566666777777777777776643 23456777777777777777777777777654 232
Q ss_pred hhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHH
Q 037236 574 ISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHG 650 (953)
Q Consensus 574 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~ 650 (953)
+...+..+...|...|++++|...|++.. +.+..+|..+...|.
T Consensus 202 ---------------------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 248 (388)
T 1w3b_A 202 ---------------------------------FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYY 248 (388)
T ss_dssp ---------------------------------CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred ---------------------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHH
Confidence 45567777888888999999999988765 456889999999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHH
Q 037236 651 IHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDA 729 (953)
Q Consensus 651 ~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA 729 (953)
..|++++|++.|+++++ ..| +..++..+..++...|++++|...|+++.+.. .++...+..+..++.+.|++++|
T Consensus 249 ~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A 324 (388)
T 1w3b_A 249 EQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC--PTHADSLNNLANIKREQGNIEEA 324 (388)
T ss_dssp HTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHH
T ss_pred HcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999 467 56789999999999999999999999998742 23478899999999999999999
Q ss_pred HHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 037236 730 FKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEK 791 (953)
Q Consensus 730 ~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 791 (953)
.+.++++.. +.+..+|..++..+...|++++|...++++++++|+++.+|..++.+|...|+
T Consensus 325 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 325 VRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 999998865 34578999999999999999999999999999999999999999999988764
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=7.9e-24 Score=235.91 Aligned_cols=350 Identities=13% Similarity=0.092 Sum_probs=292.1
Q ss_pred HHHHHhcCChHHHHHHHHHhhhCCCCCCcc-hHHHHHHhhccccccchhhHHHHHHHHhCCCCchhhHhhHHHHHHhcCC
Q 037236 444 ICGYAQNGDHLKALDYFLQMTHSDLEPDLF-SIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEK 522 (953)
Q Consensus 444 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~ 522 (953)
...+.+.|++++|++.+.++.+. .|+.. .+..+...+...++++.+...+...++.. +.+...+..+...|.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 34556677778888777777664 34433 34444455666777777777777777654 3366778888888999999
Q ss_pred hhHHHHHHHhccc--C-CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhh-HHHHHHHhccccchHHHHHHHHH
Q 037236 523 SSSARVLFDEMED--K-SLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEIS-IVSILSACSQLSALRLGKETHCY 598 (953)
Q Consensus 523 ~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~a~~~~~~ 598 (953)
+++|.+.|+++.+ | +..+|..+..++.+.|++++|++.|+++.+. .|+... +..+-..+...|++++|.+.+..
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999999988753 3 4457888899999999999999999998875 465544 44555677788999999999988
Q ss_pred HHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CH
Q 037236 599 ALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DT 674 (953)
Q Consensus 599 ~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~ 674 (953)
+.+.... +...+..+...|.+.|++++|...|+++. +.+...|..+...+...|++++|+..|++... ..| +.
T Consensus 161 al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~ 237 (388)
T 1w3b_A 161 AIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS--LSPNHA 237 (388)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH--HCTTCH
T ss_pred HHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCCH
Confidence 8876433 56788999999999999999999999886 45677899999999999999999999999998 567 57
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHH
Q 037236 675 FTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRS 751 (953)
Q Consensus 675 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~ 751 (953)
.++..+..++...|++++|...|+++.+ +.|+ ...|..++.+|.+.|++++|++.++++.. +++..+|..+...
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Confidence 8899999999999999999999999977 5565 77899999999999999999999998754 5678899999999
Q ss_pred HHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 752 CRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 752 ~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
+...|+++.|...+++++++.|+++.++..++.+|...|++++|...++++.+
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999988865
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.93 E-value=4.2e-25 Score=250.21 Aligned_cols=184 Identities=13% Similarity=0.104 Sum_probs=173.1
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhcccc---------chHHHHHHHHHHHHcCCCCCcc
Q 037236 539 VSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLS---------ALRLGKETHCYALKAILTNDAF 609 (953)
Q Consensus 539 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~---------~~~~a~~~~~~~~~~~~~~~~~ 609 (953)
..++.+|.+|++.|+.++|+++|++|.+.|++||.+||+++|.+|+..+ .++.|.++++.|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 3578889999999999999999999999999999999999999998654 4688999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhhhcC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 037236 610 VACSIIDMYAKCGCLEQSRRVFDRLK----DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACN 685 (953)
Q Consensus 610 ~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~ 685 (953)
+|++||.+|++.|++++|.++|++|. .||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||+.|+.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999997 68999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhc
Q 037236 686 HAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRA 723 (953)
Q Consensus 686 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~ 723 (953)
+.|++++|.++|++|. ..++.|+..+|+.+++.+...
T Consensus 187 ~~g~~d~A~~ll~~Mr-~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLR-DLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHH-HHTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHH-HhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999994 689999999999999988763
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.92 E-value=6.3e-25 Score=248.77 Aligned_cols=136 Identities=9% Similarity=-0.032 Sum_probs=123.2
Q ss_pred CChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHh
Q 037236 552 KLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVF 631 (953)
Q Consensus 552 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~ 631 (953)
+..++|.++|++|...|+.||.+||++++.+|++.|++++|.++++.|.+.|+.||..+|++||.+|++.|++++|.++|
T Consensus 84 ~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~ 163 (501)
T 4g26_A 84 PGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVD 163 (501)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHH
Confidence 34577888888888888888888888888888888888888888888888888899999999999999999999999999
Q ss_pred hhcC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 037236 632 DRLK----DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHA 687 (953)
Q Consensus 632 ~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~ 687 (953)
++|. .||..+|++||.+|++.|+.++|.++|++|.+.|..|+..||..++..+...
T Consensus 164 ~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 164 AHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9986 6899999999999999999999999999999999999999999999988764
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=3e-22 Score=227.98 Aligned_cols=336 Identities=10% Similarity=0.020 Sum_probs=236.6
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccchhhHHHHHHHHhCCCCchhhHhhHHH
Q 037236 436 TVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLS 515 (953)
Q Consensus 436 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 515 (953)
++..|..+...|.+.|++++|+.+|+++.+.. +.+..++..+..++...|+++.|...+..+++.+.. +..++..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHHH
Confidence 34556666666666666666666666666531 223444444444555555555555555555444322 3455566666
Q ss_pred HHHhcCChhHHHHHHHhcccCCc------ccHHHHHHH------------HHhcCChhHHHHHHHHHHHcCCCCChhhHH
Q 037236 516 LYMHCEKSSSARVLFDEMEDKSL------VSWNTMIAG------------YSQNKLPVEAIVLFRRMFSIGVQPCEISIV 577 (953)
Q Consensus 516 ~y~~~g~~~~A~~~f~~~~~~~~------~~~~~li~~------------~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 577 (953)
+|.+.|++++|.+.|+++.+.++ ..|..++.. +.+.|++++|+..|+++.+. .|
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~------ 174 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV--CV------ 174 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CT------
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC------
Confidence 66666677777666666654222 344444332 55556666666666555543 12
Q ss_pred HHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCC
Q 037236 578 SILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGY 654 (953)
Q Consensus 578 ~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~ 654 (953)
.+..++..++.+|.+.|++++|...|+++. +.+..+|..++..|...|+
T Consensus 175 ----------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 226 (450)
T 2y4t_A 175 ----------------------------WDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGD 226 (450)
T ss_dssp ----------------------------TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTC
T ss_pred ----------------------------CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 256778888999999999999999999876 5678999999999999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHH-HHHHH------------HHHHHhcCCHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHH
Q 037236 655 GKEAIELFEKMLALGHKPDTF-TFVGI------------LMACNHAGLVENGLKYFSQMQKLHAVKPK--LEHYACVVDM 719 (953)
Q Consensus 655 ~~~A~~l~~~m~~~g~~P~~~-t~~~l------------l~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~lv~~ 719 (953)
+++|+..|+++.. ..|+.. .+..+ +.+|.+.|++++|..+|+++.+..+-.|. ..+|..++.+
T Consensus 227 ~~~A~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~ 304 (450)
T 2y4t_A 227 HELSLSEVRECLK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHC 304 (450)
T ss_dssp HHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 9999999999998 567543 34443 78999999999999999999874322222 4588999999
Q ss_pred HhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHH------------HH
Q 037236 720 LGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVS------------NI 785 (953)
Q Consensus 720 l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~------------~~ 785 (953)
+.+.|++++|++.++++.. +.++.+|..++.+|...|+++.|...++++++++|+++.++..++ +.
T Consensus 305 ~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 384 (450)
T 2y4t_A 305 FSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDY 384 (450)
T ss_dssp HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhH
Confidence 9999999999999998753 447899999999999999999999999999999999999999999 56
Q ss_pred HHhcC--CchHHHHHHHHHHHCCCccCC
Q 037236 786 YAGSE--KWDDVRMMRQRMKERGLQKEA 811 (953)
Q Consensus 786 y~~~g--~~~~a~~~~~~m~~~~~~~~~ 811 (953)
|...| ++....++++.+++..++..|
T Consensus 385 y~~lg~~~~~~~~~~~~~y~~~~l~~~p 412 (450)
T 2y4t_A 385 YKILGVKRNAKKQEIIKAYRKLALQWHP 412 (450)
T ss_dssp GGGSCSSTTCCTTHHHHHHHHHHHHSCG
T ss_pred HHHhCCCccCCHHHHHHHHHHHHHHhCC
Confidence 77777 333333344444433333333
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=5.1e-21 Score=221.80 Aligned_cols=258 Identities=12% Similarity=-0.010 Sum_probs=184.0
Q ss_pred cCChhHHHHHHHhccc----------------C-CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 037236 520 CEKSSSARVLFDEMED----------------K-SLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSA 582 (953)
Q Consensus 520 ~g~~~~A~~~f~~~~~----------------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 582 (953)
.|++++|...|+++.+ + +...|..+...+...|++++|+..|+++.+.. |+...+..+..+
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~ 279 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALI 279 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHH
Confidence 6777888777776544 1 23466777777888888888888888877754 335566666667
Q ss_pred hccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHH
Q 037236 583 CSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAI 659 (953)
Q Consensus 583 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~ 659 (953)
+...|+++.|...+..+.+.... +...+..+...|.+.|++++|...|+++. +.+...|..+...|...|++++|+
T Consensus 280 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 358 (514)
T 2gw1_A 280 MADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCE 358 (514)
T ss_dssp HHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHH
Confidence 77777777777777777665432 55667777778888888888888877664 345667777777788888888888
Q ss_pred HHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhh---cCCHHHHHH
Q 037236 660 ELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK----LEHYACVVDMLGR---AGKLDDAFK 731 (953)
Q Consensus 660 ~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~lv~~l~~---~g~~~eA~~ 731 (953)
..|+++.+. .| +..++..+...+...|++++|..+++.+.+...-.|+ ...+..+...|.+ .|++++|.+
T Consensus 359 ~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~ 436 (514)
T 2gw1_A 359 TLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATN 436 (514)
T ss_dssp HHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHH
T ss_pred HHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHH
Confidence 888887773 44 4566777777788888888888888777664333332 2367777777777 788888888
Q ss_pred HHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHH
Q 037236 732 LIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLV 782 (953)
Q Consensus 732 ~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l 782 (953)
.++++.. +.+..+|..+...+...|+++.|...++++++++|+++..+..+
T Consensus 437 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 437 LLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 7776543 33566777777777888888888888888888888777666555
No 9
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.88 E-value=4.7e-17 Score=193.44 Aligned_cols=378 Identities=11% Similarity=0.083 Sum_probs=290.3
Q ss_pred HHHHHHHhccccchHHHHHHHHHHHHcC--CCCchhHHHHHHHHHHhcCCcccHHHHhccCCCCChhhHHHHHHHHHhcC
Q 037236 374 VLNVLTSCSEKSELLSLKELHGYSLRHG--FDNDELVANAFVVAYAKCGSEISAENVFHGMDSRTVSSWNALICGYAQNG 451 (953)
Q Consensus 374 ~~~ll~~~~~~~~~~~a~~i~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 451 (953)
.....+++...|...++.++++.++-.+ +..+....+.|+.+..+. +..+.....++...-+ ...+...+...|
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lg 1063 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNE 1063 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCC
Confidence 3556667778888888888888887432 223456667777776666 4455555555544323 455778888999
Q ss_pred ChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccchhhHHHHHHHHhCCCCchhhHhhHHHHHHhcCChhHHHHHHH
Q 037236 452 DHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFD 531 (953)
Q Consensus 452 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~ 531 (953)
.+++|..+|++... .....+.++ ...+++++|.++...+ .+..+|..+..++.+.|++++|...|.
T Consensus 1064 lyEEAf~IYkKa~~-----~~~A~~VLi---e~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYi 1129 (1630)
T 1xi4_A 1064 LFEEAFAIFRKFDV-----NTSAVQVLI---EHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYI 1129 (1630)
T ss_pred CHHHHHHHHHHcCC-----HHHHHHHHH---HHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999998521 111122222 2677888888887754 357788999999999999999999997
Q ss_pred hcccCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHH
Q 037236 532 EMEDKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVA 611 (953)
Q Consensus 532 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 611 (953)
+. .|...|..++..+.+.|++++|++.|...++.. ++....+.+..+|++.+.++....+. + .++...+
T Consensus 1130 KA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~ 1198 (1630)
T 1xi4_A 1130 KA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHI 1198 (1630)
T ss_pred hc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHH
Confidence 75 677888999999999999999999999877654 44434445888899998887644442 1 2355666
Q ss_pred HHHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 037236 612 CSIIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVE 691 (953)
Q Consensus 612 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~ 691 (953)
..+.+.|...|++++|...|... ..|..+...|.+.|++++|++.+++. -+..+|..+..+|...|.+.
T Consensus 1199 ~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~ 1267 (1630)
T 1xi4_A 1199 QQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFR 1267 (1630)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHH
Confidence 77999999999999999999985 58999999999999999999999876 35689999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC-C-CChhHHHHHHHHHHhc--CChhHHHHHHHH
Q 037236 692 NGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPE-E-ADAGIWSSLLRSCRTY--GALKMGEKVAKT 767 (953)
Q Consensus 692 ~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~-~~~~~~~~ll~~~~~~--g~~~~a~~~~~~ 767 (953)
.|...... +..+++.+..++..|.+.|.++||+.+++.... + .....|.-|.-.+.+. +++.++.+.+..
T Consensus 1268 LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~ 1341 (1630)
T 1xi4_A 1268 LAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWS 1341 (1630)
T ss_pred HHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99887543 345567788999999999999999999988754 3 3345676666666554 477788888888
Q ss_pred HhccCC-----CCcchHHHHHHHHHhcCCchHHHH
Q 037236 768 LLELEP-----DKAENYVLVSNIYAGSEKWDDVRM 797 (953)
Q Consensus 768 ~~~l~p-----~~~~~~~~l~~~y~~~g~~~~a~~ 797 (953)
-+.+.| ++...+.-+.-+|.+.|+|+.|..
T Consensus 1342 rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1342 RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred hcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 888777 788889999999999999999984
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.88 E-value=2.5e-20 Score=215.98 Aligned_cols=426 Identities=11% Similarity=-0.002 Sum_probs=300.8
Q ss_pred ccHHHHHHHHHcCCChhHHHHHHHHHHhccCCCCCchhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCchhHHHHHHH
Q 037236 335 VSWNTIIGAFSMAGDVCGTFDLLRKMQMKEEEMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLRHGFDNDELVANAFVV 414 (953)
Q Consensus 335 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 414 (953)
..|......+.+.|++++|+..|+++... .|+..++..+..++...|+++.|...+..+++.+
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------------- 69 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALEL----KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK------------- 69 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhc----CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-------------
Confidence 34666777888888888888888888774 3555555555555555555555555555554432
Q ss_pred HHHhcCCcccHHHHhccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccchhhHH
Q 037236 415 AYAKCGSEISAENVFHGMDSRTVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEI 494 (953)
Q Consensus 415 ~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i 494 (953)
..+...|..+...|.+.|++++|+..|+++...+ +++......++..+........+.+.
T Consensus 70 -------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (514)
T 2gw1_A 70 -------------------PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEK 129 (514)
T ss_dssp -------------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC
T ss_pred -------------------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHH
Confidence 2245667777778888888888888888887764 23444444444444433333333333
Q ss_pred HHHHHHhCCCCchhhHhhHHH---HHHhcCChhHHHHHHHhcc---------cC-CcccHHHHHHHHHh---cCChhHHH
Q 037236 495 HGFVIRNGLEGDSFTGISLLS---LYMHCEKSSSARVLFDEME---------DK-SLVSWNTMIAGYSQ---NKLPVEAI 558 (953)
Q Consensus 495 ~~~~~~~g~~~~~~~~~~li~---~y~~~g~~~~A~~~f~~~~---------~~-~~~~~~~li~~~~~---~g~~~~A~ 558 (953)
+..+...+..|+......... ..........+...+.... .+ +...|..+...+.. .|++++|+
T Consensus 130 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 209 (514)
T 2gw1_A 130 FGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKAD 209 (514)
T ss_dssp ---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHH
T ss_pred HHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHH
Confidence 322222111111110000000 0000011111111111111 11 23344445554554 89999999
Q ss_pred HHHHHHHH-----cCCCCC--------hhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHH
Q 037236 559 VLFRRMFS-----IGVQPC--------EISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLE 625 (953)
Q Consensus 559 ~~~~~m~~-----~g~~p~--------~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 625 (953)
..|+++.+ ....|+ ..++..+...+...|+++.|...+..+.+.... ...+..++..|...|+++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~ 287 (514)
T 2gw1_A 210 ESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDST 287 (514)
T ss_dssp HHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCT
T ss_pred HHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHH
Confidence 99999988 322332 345666777888999999999999999987655 888899999999999999
Q ss_pred HHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037236 626 QSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQ 701 (953)
Q Consensus 626 ~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 701 (953)
+|...|+++. +.+...|..+...|...|++++|+..|+++.+. .| +..++..+...+...|++++|..+++.+.
T Consensus 288 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 365 (514)
T 2gw1_A 288 EYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL--DPENIFPYIQLACLAYRENKFDDCETLFSEAK 365 (514)
T ss_dssp TGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHT--CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999876 446788999999999999999999999999984 56 56788899999999999999999999998
Q ss_pred HhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC----CCC----hhHHHHHHHHHHh---cCChhHHHHHHHHHh
Q 037236 702 KLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE----EAD----AGIWSSLLRSCRT---YGALKMGEKVAKTLL 769 (953)
Q Consensus 702 ~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~----~~~----~~~~~~ll~~~~~---~g~~~~a~~~~~~~~ 769 (953)
+. .|+ ...+..+...|.+.|++++|.+.++++.. .++ ..+|..+...+.. .|+++.|...+++++
T Consensus 366 ~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~ 442 (514)
T 2gw1_A 366 RK---FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKAS 442 (514)
T ss_dssp HH---STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHH
T ss_pred HH---cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHH
Confidence 74 343 67889999999999999999999987743 222 3489999999999 999999999999999
Q ss_pred ccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 770 ELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 770 ~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
+++|+++.++..++.+|...|++++|...+++..+
T Consensus 443 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 443 KLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888766
No 11
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.87 E-value=4.8e-16 Score=184.89 Aligned_cols=312 Identities=10% Similarity=0.110 Sum_probs=210.8
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCC--CCCcchHHHHHHhhccccccchhhHHHHHHHHhCCCCchhhHhhHHHHHHhc
Q 037236 443 LICGYAQNGDHLKALDYFLQMTHSDL--EPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHC 520 (953)
Q Consensus 443 li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~ 520 (953)
.+.+|...|.+.+|++++++....+- .-+...-+.++.+..+. +..++.++...+.+ ....-+...+...
T Consensus 991 ~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~~eIA~Iai~l 1062 (1630)
T 1xi4_A 991 TVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-------YDAPDIANIAISN 1062 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-------ccHHHHHHHHHhC
Confidence 34566677777777777777763311 01112223333333333 44444444433321 1123355666677
Q ss_pred CChhHHHHHHHhcccCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHH
Q 037236 521 EKSSSARVLFDEMEDKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYAL 600 (953)
Q Consensus 521 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 600 (953)
|.+++|..+|++... .....+.++ -..+++++|.++.++. -+..+|..+-.++...|.+++|...+...
T Consensus 1063 glyEEAf~IYkKa~~-~~~A~~VLi---e~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA- 1131 (1630)
T 1xi4_A 1063 ELFEEAFAIFRKFDV-NTSAVQVLI---EHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA- 1131 (1630)
T ss_pred CCHHHHHHHHHHcCC-HHHHHHHHH---HHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-
Confidence 788888888877641 111222222 2567777777777654 23566777777888888888888777543
Q ss_pred HcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 037236 601 KAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK--DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFV 678 (953)
Q Consensus 601 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~ 678 (953)
.|...|..++..+.+.|++++|.+.|.... .+++...+.++.+|++.++.++ ++-| ++ .|+...+.
T Consensus 1132 -----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rlee-le~f---I~---~~n~ad~~ 1199 (1630)
T 1xi4_A 1132 -----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAE-LEEF---IN---GPNNAHIQ 1199 (1630)
T ss_pred -----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHH-HHHH---Hh---CCCHHHHH
Confidence 366677778888888888888888887654 2333333347777888877774 3333 22 45667777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCCh
Q 037236 679 GILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSCRTYGAL 758 (953)
Q Consensus 679 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 758 (953)
.+...|...|++++|..+|..+ ..|..++..|.+.|++++|.+.+++. .+..+|..+..+|...|++
T Consensus 1200 ~iGd~le~eg~YeeA~~~Y~kA----------~ny~rLA~tLvkLge~q~AIEaarKA---~n~~aWkev~~acve~~Ef 1266 (1630)
T 1xi4_A 1200 QVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKA---NSTRTWKEVCFACVDGKEF 1266 (1630)
T ss_pred HHHHHHHhcCCHHHHHHHHHhh----------hHHHHHHHHHHHhCCHHHHHHHHHHh---CCHHHHHHHHHHHhhhhHH
Confidence 8899999999999999999875 36889999999999999999999886 5678999999999999999
Q ss_pred hHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 037236 759 KMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRM 802 (953)
Q Consensus 759 ~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 802 (953)
.+|..+... +.. ++..+..+++.|.+.|.|++|+.+.+..
T Consensus 1267 ~LA~~cgl~-Iiv---~~deLeeli~yYe~~G~feEAI~LlE~a 1306 (1630)
T 1xi4_A 1267 RLAQMCGLH-IVV---HADELEELINYYQDRGYFEELITMLEAA 1306 (1630)
T ss_pred HHHHHHHHh-hhc---CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999888765 333 4556678999999999999999988543
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.85 E-value=1.3e-19 Score=211.31 Aligned_cols=415 Identities=12% Similarity=0.038 Sum_probs=209.3
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHhccCCCCCchhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 037236 337 WNTIIGAFSMAGDVCGTFDLLRKMQMKEEEMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLRHGFDNDELVANAFVVAY 416 (953)
Q Consensus 337 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y 416 (953)
|..+...+.+.|++++|++.|+++.... +.+..++..+...+...|+++.|.+.+..+++.. +.+..++..+..+|
T Consensus 28 ~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 28 LKNRGNHFFTAKNFNEAIKYYQYAIELD---PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHTTCCC-CHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC---CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 4444555555555555555555555432 2233344444444444445555544444444432 22455566666666
Q ss_pred HhcCCcccHHHHhccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhC------CCCCCcchHHHHHHhhccccccch
Q 037236 417 AKCGSEISAENVFHGMDSRTVSSWNALICGYAQNGDHLKALDYFLQMTHS------DLEPDLFSIGSLILACTHLKSLHR 490 (953)
Q Consensus 417 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~t~~~ll~~~~~~~~~~~ 490 (953)
.+.|++++|...|+.+ ..+....+..+..+...+...+|+..++++... ...|+...+..
T Consensus 104 ~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~------------- 169 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLAS------------- 169 (537)
T ss_dssp HHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHH-------------
T ss_pred HHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHH-------------
Confidence 6777777777666432 222222333344455555566777777776543 11222222222
Q ss_pred hhHHHHHHHHhCCCCchhhHhhHHHHHHhcCChhHHHHHHHhcccCCcc---cHHHHHHHHHh--------cCChhHHHH
Q 037236 491 GKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMEDKSLV---SWNTMIAGYSQ--------NKLPVEAIV 559 (953)
Q Consensus 491 a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~--------~g~~~~A~~ 559 (953)
|....+.+.+...+......+.. .+..+...+.. .|++++|+.
T Consensus 170 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~ 223 (537)
T 3fp2_A 170 --------------------------FFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTD 223 (537)
T ss_dssp --------------------------HHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHH
T ss_pred --------------------------HHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 22222222222222222221111 11111111111 123444444
Q ss_pred HHHHHHHcCCCCCh--------hhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHh
Q 037236 560 LFRRMFSIGVQPCE--------ISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVF 631 (953)
Q Consensus 560 ~~~~m~~~g~~p~~--------~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~ 631 (953)
+|+++.+. .|+. .++..+-..+...|+++.|...+..+.+... +...+..+...|.+.|++++|...|
T Consensus 224 ~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~ 299 (537)
T 3fp2_A 224 MYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHP--TPNSYIFLALTLADKENSQEFFKFF 299 (537)
T ss_dssp HHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--CHHHHHHHHHHTCCSSCCHHHHHHH
T ss_pred HHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHhcCHHHHHHHH
Confidence 44444432 2221 1122222333334444444444444444322 2444555555555666666666666
Q ss_pred hhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC
Q 037236 632 DRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVK 707 (953)
Q Consensus 632 ~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 707 (953)
+++. +.+..+|..+...|...|++++|++.|+++.+. .| +..++..+..++...|++++|..+|+.+.+. .
T Consensus 300 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~ 374 (537)
T 3fp2_A 300 QKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL--NPENVYPYIQLACLLYKQGKFTESEAFFNETKLK---F 374 (537)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---C
T ss_pred HHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---C
Confidence 5543 334556666666666677777777777766663 34 3456666666666777777777777666553 2
Q ss_pred CC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC----CC----ChhHHHHHHHHHHhc----------CChhHHHHHHHHH
Q 037236 708 PK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE----EA----DAGIWSSLLRSCRTY----------GALKMGEKVAKTL 768 (953)
Q Consensus 708 p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~----~~----~~~~~~~ll~~~~~~----------g~~~~a~~~~~~~ 768 (953)
|+ ...+..+..+|.+.|++++|.+.++++.. .+ ....+..+...+... |+++.|...++++
T Consensus 375 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 454 (537)
T 3fp2_A 375 PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKA 454 (537)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHH
Confidence 33 45666666677777777777766665432 11 111233344455555 7777777777777
Q ss_pred hccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 769 LELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 769 ~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
++++|+++.++..++.+|...|++++|...++...+
T Consensus 455 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 455 CELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 777777777777777777777777777777666654
No 13
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.84 E-value=7.1e-19 Score=205.05 Aligned_cols=443 Identities=10% Similarity=-0.032 Sum_probs=272.8
Q ss_pred cHHHHHHHHHcCCCchHHHHHHHHhhhccCCCCCChhhHHHHHHhhhcCCCchHHHHHHHHHHHhCCCCCchHHHHHHHh
Q 037236 233 SWNSIICGSSENGFSCESFDLLIKMMGCEEGFIPDVATVVTVLPVCAGEGNVDLGILVHGLAVKLGLTRELMVNNALVDM 312 (953)
Q Consensus 233 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 312 (953)
.|..+...+.+.|++++|++.|+++. .. .+.+..++..+..++...|+++.|...+..+++.. +.+...+..+...
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~~~~~al--~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIKYYQYAI--EL-DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHH--HH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHH--hh-CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 45556666777777777777777762 21 23345566666666666666777776666666654 3345566667777
Q ss_pred hHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHhccCCCCCchhhHHHHHHHhccccchHHHHH
Q 037236 313 YAKCGFLSEAQILFDKNNNKNVVSWNTIIGAFSMAGDVCGTFDLLRKMQMKEEEMKPNEVTVLNVLTSCSEKSELLSLKE 392 (953)
Q Consensus 313 ~~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~p~~~t~~~ll~~~~~~~~~~~a~~ 392 (953)
|...|++++|.+.|+.+ ..+....+..+..+...+...+|+..++++.... |+..
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~----~~~~-------------------- 157 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKD----EGRG-------------------- 157 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC------------------------------
T ss_pred HHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhC----cccc--------------------
Confidence 77777777777777532 2222222233344444455566666666664421 1000
Q ss_pred HHHHHHHcCCCCchhHHHHHHHHHHhcCCcccHHHHhccCCCCChh---hHHHHHHHHHhc--------CChHHHHHHHH
Q 037236 393 LHGYSLRHGFDNDELVANAFVVAYAKCGSEISAENVFHGMDSRTVS---SWNALICGYAQN--------GDHLKALDYFL 461 (953)
Q Consensus 393 i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~--------g~~~~A~~~~~ 461 (953)
....|+ ...+..|....+.+.+...+......+.. .+..+...+... |++++|+.+|+
T Consensus 158 -------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~ 226 (537)
T 3fp2_A 158 -------SQVLPS----NTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYH 226 (537)
T ss_dssp --------CCCCC----HHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHH
T ss_pred -------ccccch----HhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 001111 22233344445555555555555444332 222222222211 34555555555
Q ss_pred HhhhCCCCCCcc-hHHHHHHhhccccccchhhHHHHHHHHhCCCCchhhHhhHHHHHHhcCChhHHHHHHHhcccCCccc
Q 037236 462 QMTHSDLEPDLF-SIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMEDKSLVS 540 (953)
Q Consensus 462 ~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~ 540 (953)
++.+. .|+.. .+..+ ..+
T Consensus 227 ~~l~~--~p~~~~~~~~~-----------------------------------------------------------~~~ 245 (537)
T 3fp2_A 227 SLLSA--NTVDDPLRENA-----------------------------------------------------------ALA 245 (537)
T ss_dssp HHHC----CCCHHHHHHH-----------------------------------------------------------HHH
T ss_pred HHHHH--CCCcchhhHHH-----------------------------------------------------------HHH
Confidence 55542 12111 00000 012
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHh
Q 037236 541 WNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAK 620 (953)
Q Consensus 541 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 620 (953)
|..+...+...|++++|+..|++..+. .|+...+..+...+...|+++.|...+..+.+.... +..++..+...|.+
T Consensus 246 ~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 322 (537)
T 3fp2_A 246 LCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFI 322 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHh
Confidence 333344455555555555555555553 344445555555556666666666666655554322 56778889999999
Q ss_pred cCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 037236 621 CGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKY 696 (953)
Q Consensus 621 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~ 696 (953)
.|++++|...|+++. +.+...|..+...|...|++++|++.|+++.+. .| +...+..+...+...|++++|...
T Consensus 323 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~ 400 (537)
T 3fp2_A 323 LQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQ 400 (537)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 999999999999876 456788999999999999999999999999984 56 567888999999999999999999
Q ss_pred HHHHHHhcCCCCC----hhHHHHHHHHHhhc----------CCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhH
Q 037236 697 FSQMQKLHAVKPK----LEHYACVVDMLGRA----------GKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKM 760 (953)
Q Consensus 697 ~~~m~~~~~~~p~----~~~~~~lv~~l~~~----------g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~ 760 (953)
|+.+.+..+-.+. ...+..+..+|.+. |++++|.+.++++.. +.+..+|..+...+...|+++.
T Consensus 401 ~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~ 480 (537)
T 3fp2_A 401 YDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDE 480 (537)
T ss_dssp HHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHH
Confidence 9998764422222 22244556778888 999999999998754 4567899999999999999999
Q ss_pred HHHHHHHHhccCCCCcchHHH
Q 037236 761 GEKVAKTLLELEPDKAENYVL 781 (953)
Q Consensus 761 a~~~~~~~~~l~p~~~~~~~~ 781 (953)
|...+++++++.|+++.....
T Consensus 481 A~~~~~~al~~~~~~~~~~~~ 501 (537)
T 3fp2_A 481 AIELFEDSAILARTMDEKLQA 501 (537)
T ss_dssp HHHHHHHHHHHC--CHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHH
Confidence 999999999999988876543
No 14
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.84 E-value=5.3e-19 Score=201.03 Aligned_cols=303 Identities=14% Similarity=0.036 Sum_probs=221.1
Q ss_pred CcchHHHHHHhhccccccchhhHHHHHHHHhCCCCchhhHhhHHHHHHhcCChhHHHHHHHhccc---CCcccHHHHHHH
Q 037236 471 DLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMED---KSLVSWNTMIAG 547 (953)
Q Consensus 471 ~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~ 547 (953)
+...+..+...+.+.|+++.|..++..+++... .+...+..+..+|.+.|++++|...|+++.+ .+...|..+...
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 344455555555556666666666665555432 2345555555566666666666666655542 233455555555
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCh----hhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCC
Q 037236 548 YSQNKLPVEAIVLFRRMFSIGVQPCE----ISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGC 623 (953)
Q Consensus 548 ~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 623 (953)
|.+.|++++|++.|+++.+. .|+. ..+..+...+.. ..+..+...|.+.|+
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGSGD 158 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTC
T ss_pred HHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHcCC
Confidence 66666666666666655543 2322 122222211100 112234556889999
Q ss_pred HHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037236 624 LEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQ 699 (953)
Q Consensus 624 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~ 699 (953)
+++|...|+++. +.+...|..++..|...|++++|++.|+++.+. .| +..++..++.++...|++++|..+|+.
T Consensus 159 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 236 (450)
T 2y4t_A 159 YTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL--KNDNTEAFYKISTLYYQLGDHELSLSEVRE 236 (450)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH--HCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999876 557889999999999999999999999999984 45 678899999999999999999999999
Q ss_pred HHHhcCCCCC-hhHHHHH------------HHHHhhcCCHHHHHHHHHhCCC-CCC-----hhHHHHHHHHHHhcCChhH
Q 037236 700 MQKLHAVKPK-LEHYACV------------VDMLGRAGKLDDAFKLIIEMPE-EAD-----AGIWSSLLRSCRTYGALKM 760 (953)
Q Consensus 700 m~~~~~~~p~-~~~~~~l------------v~~l~~~g~~~eA~~~~~~~~~-~~~-----~~~~~~ll~~~~~~g~~~~ 760 (953)
+.+ +.|+ ...+..+ +..+.+.|++++|.+.++++.. .|+ ...|..++..+...|+++.
T Consensus 237 ~~~---~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~ 313 (450)
T 2y4t_A 237 CLK---LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVE 313 (450)
T ss_dssp HHH---HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHH---hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHH
Confidence 976 4555 4444444 8899999999999999988753 344 3478888999999999999
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 761 GEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 761 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
|...++++++++|+++.++..++.+|...|++++|...++.+.+
T Consensus 314 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 314 AIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988866
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.80 E-value=3.4e-17 Score=179.54 Aligned_cols=302 Identities=15% Similarity=0.018 Sum_probs=220.2
Q ss_pred chHHHHHHhhccccccchhhHHHHHHHHhCCCCchhhHhhHHHHHHhcCChhHHHHHHHhccc---CCcccHHHHHHHHH
Q 037236 473 FSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMED---KSLVSWNTMIAGYS 549 (953)
Q Consensus 473 ~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~ 549 (953)
..+..+...+...|+++.|...+..+++..+. +...+..+...|...|++++|...|+++.+ .+...|..+...|.
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 34455555666667777777777776665432 455666666667777777777777766543 23456666666677
Q ss_pred hcCChhHHHHHHHHHHHcCCCC---ChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHH
Q 037236 550 QNKLPVEAIVLFRRMFSIGVQP---CEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQ 626 (953)
Q Consensus 550 ~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 626 (953)
+.|++++|+..|++..+. .| +.......+. .... ...+..+...|...|++++
T Consensus 83 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~------~~~~----------------~~~~~~~a~~~~~~~~~~~ 138 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLV------KADE----------------MQRLRSQALDAFDGADYTA 138 (359)
T ss_dssp HHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHH------HHHH----------------HHHHHHHHHHHHHTTCHHH
T ss_pred HcCChHHHHHHHHHHHhc--CCcccChHHHHHHHH------HHHH----------------HHHHHHHHHHHHHccCHHH
Confidence 777777777777766654 33 1111111000 0000 1112334678889999999
Q ss_pred HHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037236 627 SRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQK 702 (953)
Q Consensus 627 A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 702 (953)
|...|+++. +.+...|..+...+...|++++|+..++++.+. .| +..++..+...+...|++++|...|+.+.+
T Consensus 139 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 139 AITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL--KSDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999876 557788999999999999999999999999984 56 678899999999999999999999999976
Q ss_pred hcCCCCC-hhHHH------------HHHHHHhhcCCHHHHHHHHHhCCC-CCC-h----hHHHHHHHHHHhcCChhHHHH
Q 037236 703 LHAVKPK-LEHYA------------CVVDMLGRAGKLDDAFKLIIEMPE-EAD-A----GIWSSLLRSCRTYGALKMGEK 763 (953)
Q Consensus 703 ~~~~~p~-~~~~~------------~lv~~l~~~g~~~eA~~~~~~~~~-~~~-~----~~~~~ll~~~~~~g~~~~a~~ 763 (953)
. .|+ ...+. .+...+.+.|++++|.+.++++.. .|+ . ..|..+...+...|+++.|..
T Consensus 217 ~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 217 L---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp H---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred h---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 4 344 23222 236779999999999999987653 343 3 235567788899999999999
Q ss_pred HHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 764 VAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 764 ~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
.++++++++|+++.++..++.+|...|++++|...++...+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 294 ICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999888765
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.79 E-value=5e-17 Score=178.17 Aligned_cols=313 Identities=10% Similarity=-0.004 Sum_probs=233.4
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccchhhHHHHHHHHhCCCCchhhHhhHHHH
Q 037236 437 VSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSL 516 (953)
Q Consensus 437 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~ 516 (953)
+..|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|+++.|...+..+++.... +...+..+..+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHHH
Confidence 3445566666666777777777777666542 223455556666666667777777777766665432 45667778888
Q ss_pred HHhcCChhHHHHHHHhcccCCc------ccHHHH------------HHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHH
Q 037236 517 YMHCEKSSSARVLFDEMEDKSL------VSWNTM------------IAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVS 578 (953)
Q Consensus 517 y~~~g~~~~A~~~f~~~~~~~~------~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 578 (953)
|.+.|++++|...|++..+.++ ..|..+ ...+...|++++|++.|+++.+. .|+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~------ 152 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV--CVW------ 152 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT------
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCC------
Confidence 8888888888888887764332 233333 46677778888888888777664 232
Q ss_pred HHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCCh
Q 037236 579 ILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYG 655 (953)
Q Consensus 579 ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 655 (953)
+...+..+...|.+.|++++|...|+++. +.+...|..+...|...|++
T Consensus 153 ----------------------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 204 (359)
T 3ieg_A 153 ----------------------------DAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDH 204 (359)
T ss_dssp ----------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCH
T ss_pred ----------------------------chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 45567778888899999999999998775 45778899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHH------------HHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCh--hHHHHHHHHH
Q 037236 656 KEAIELFEKMLALGHKPD-TFTFV------------GILMACNHAGLVENGLKYFSQMQKLHAVKPKL--EHYACVVDML 720 (953)
Q Consensus 656 ~~A~~l~~~m~~~g~~P~-~~t~~------------~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~lv~~l 720 (953)
++|+..|++..+ ..|+ ..++. .+...+...|++++|...++.+.+..+-.|.. ..+..+..+|
T Consensus 205 ~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 282 (359)
T 3ieg_A 205 ELSLSEVRECLK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCF 282 (359)
T ss_dssp HHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--hCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 999999999998 4564 33222 33667889999999999999998744322221 3456688999
Q ss_pred hhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 037236 721 GRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGS 789 (953)
Q Consensus 721 ~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 789 (953)
.+.|++++|.+.+++... +.++.+|..+...+...|+++.|...++++++++|+++.....|..++...
T Consensus 283 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 283 SKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 999999999999988754 347889999999999999999999999999999999999988888876643
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.78 E-value=6.9e-17 Score=174.89 Aligned_cols=286 Identities=11% Similarity=-0.012 Sum_probs=229.8
Q ss_pred CCchhhHhhHHHHHHhcCChhHHHHHHHhccc---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHH
Q 037236 504 EGDSFTGISLLSLYMHCEKSSSARVLFDEMED---KSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSIL 580 (953)
Q Consensus 504 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 580 (953)
..+..+...+...+...|++++|.++|+++.+ .+...+..++..+.+.|++++|+.+++++.+.. +.+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 34555666777777888888888888887754 244566667777888888888888888887753 23455666666
Q ss_pred HHhcccc-chHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChH
Q 037236 581 SACSQLS-ALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGK 656 (953)
Q Consensus 581 ~a~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 656 (953)
..+...| ..+.|...+..+.+.... +...+..+...|...|++++|...|+++. +.+...|..+...|...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 7777778 788888888887765433 56778899999999999999999999876 445677888999999999999
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC-------CCChhHHHHHHHHHhhcCCHHH
Q 037236 657 EAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAV-------KPKLEHYACVVDMLGRAGKLDD 728 (953)
Q Consensus 657 ~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~-------~p~~~~~~~lv~~l~~~g~~~e 728 (953)
+|++.|+++.+ ..| +..++..+...+...|++++|..+++.+.+...- ......+..+..+|.+.|++++
T Consensus 177 ~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999998 456 6788899999999999999999999999774321 2236788999999999999999
Q ss_pred HHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHH-HhcCCch
Q 037236 729 AFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIY-AGSEKWD 793 (953)
Q Consensus 729 A~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y-~~~g~~~ 793 (953)
|.+.+++... +.+..+|..+...+...|+++.|...++++++++|+++.++..++.+| ...|+.+
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 9999988753 456789999999999999999999999999999999999999999988 4555543
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.74 E-value=4.5e-16 Score=168.43 Aligned_cols=261 Identities=12% Similarity=0.046 Sum_probs=227.4
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHH
Q 037236 536 KSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSII 615 (953)
Q Consensus 536 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 615 (953)
.+...+..+...+...|++++|+++|+++.+.. +.+...+..+..++...|+.+++...+..+.+.... +...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHH
Confidence 466678888899999999999999999998864 334456666778888999999999999999886543 678889999
Q ss_pred HHHHhcC-CHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCH
Q 037236 616 DMYAKCG-CLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLV 690 (953)
Q Consensus 616 ~~y~~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~ 690 (953)
..|...| ++++|...|++.. +.+...|..+...|...|++++|++.|+++.+. .| +..++..+...+...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL--MKGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHhhH
Confidence 9999999 9999999999876 446788999999999999999999999999984 45 467788899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-----------CCChhHHHHHHHHHHhcCCh
Q 037236 691 ENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE-----------EADAGIWSSLLRSCRTYGAL 758 (953)
Q Consensus 691 ~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-----------~~~~~~~~~ll~~~~~~g~~ 758 (953)
++|..+++.+.+ +.|+ ...+..+..+|.+.|++++|.+.++++.. +..+.+|..+...+...|++
T Consensus 176 ~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 176 KLAERFFSQALS---IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp HHHHHHHHHHHT---TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 999999999976 4455 78889999999999999999999887642 23467999999999999999
Q ss_pred hHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 037236 759 KMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMK 803 (953)
Q Consensus 759 ~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 803 (953)
+.|...+++++++.|+++.++..++.+|...|++++|...+++..
T Consensus 253 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 297 (330)
T 3hym_B 253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTAL 297 (330)
T ss_dssp HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999887554
No 19
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.72 E-value=2.7e-16 Score=168.96 Aligned_cols=222 Identities=14% Similarity=0.067 Sum_probs=85.8
Q ss_pred ccCChHHHHHHhccCCCCCeecHHHHHHHHHcCCCchHHHHHHHHhhhccCCCCCChhhHHHHHHhhhcCCCchHHHHHH
Q 037236 212 KCAFVEEMVKLFEVMPERNLVSWNSIICGSSENGFSCESFDLLIKMMGCEEGFIPDVATVVTVLPVCAGEGNVDLGILVH 291 (953)
Q Consensus 212 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 291 (953)
+.|++++|.+.+++++.|+ +|..+..++.+.|++++|++.|.+. +|..+|..++.++...|++++|...+
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika--------~D~~~y~~V~~~ae~~g~~EeAi~yl 84 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA--------DDPSSYMEVVQAANTSGNWEELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC--------CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 5688999999999997665 8999999999999999999999765 68889999999999999999999988
Q ss_pred HHHHHhCCCCCchHHHHHHHhhHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHhccCCCCCch
Q 037236 292 GLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFDKNNNKNVVSWNTIIGAFSMAGDVCGTFDLLRKMQMKEEEMKPNE 371 (953)
Q Consensus 292 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~p~~ 371 (953)
...++. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|..+|..+
T Consensus 85 ~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----------- 148 (449)
T 1b89_A 85 QMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------- 148 (449)
T ss_dssp --------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----------
T ss_pred HHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----------
Confidence 888774 45678889999999999999999988864 67789999999999999999999999865
Q ss_pred hhHHHHHHHhccccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCcccHHHHhccCCCCChhhHHHHHHHHHhcC
Q 037236 372 VTVLNVLTSCSEKSELLSLKELHGYSLRHGFDNDELVANAFVVAYAKCGSEISAENVFHGMDSRTVSSWNALICGYAQNG 451 (953)
Q Consensus 372 ~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 451 (953)
..|..+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|
T Consensus 149 ~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G 221 (449)
T 1b89_A 149 SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRG 221 (449)
T ss_dssp TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCC
Confidence 25777888888888888888777766 367788888888888888888877766654 34444456777888888
Q ss_pred ChHHHHHHHHHhhhC
Q 037236 452 DHLKALDYFLQMTHS 466 (953)
Q Consensus 452 ~~~~A~~~~~~m~~~ 466 (953)
++++|+.+++..+..
T Consensus 222 ~~eEai~lLe~aL~l 236 (449)
T 1b89_A 222 YFEELITMLEAALGL 236 (449)
T ss_dssp CHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHhCC
Confidence 888888888877643
No 20
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.72 E-value=1.7e-16 Score=170.64 Aligned_cols=321 Identities=12% Similarity=0.108 Sum_probs=144.3
Q ss_pred HhcCCcccHHHHhccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccchhhHHHH
Q 037236 417 AKCGSEISAENVFHGMDSRTVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHG 496 (953)
Q Consensus 417 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~ 496 (953)
-+.|++++|.+.++++..+ .+|..|+.++.+.|++++|++.|.+ .+|..+|..++.++...|+++++...+.
T Consensus 14 ~~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3678899999999998665 4899999999999999999999965 3677899999999999999999999888
Q ss_pred HHHHhCCCCchhhHhhHHHHHHhcCChhHHHHHHHhcccCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhH
Q 037236 497 FVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMEDKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISI 576 (953)
Q Consensus 497 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 576 (953)
...+. .+++.+.+.|+.+|.++|+++++.++++ .|+..+|+.+...|...|++++|..+|..+ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT---------TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 77774 4457888899999999999999888875 367779999999999999999999999876 378
Q ss_pred HHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCChH
Q 037236 577 VSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGK 656 (953)
Q Consensus 577 ~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 656 (953)
..+..++.++|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|+++
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFE 224 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHH
Confidence 88888889999999888888877 278888889999999999999988777655 34444456888899999999
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHhcCCCC------ChhHHHHHHHHHhhcCCHH
Q 037236 657 EAIELFEKMLALGHKP-DTFTFVGILMACN--HAGLVENGLKYFSQMQKLHAVKP------KLEHYACVVDMLGRAGKLD 727 (953)
Q Consensus 657 ~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~--~~g~~~~a~~~~~~m~~~~~~~p------~~~~~~~lv~~l~~~g~~~ 727 (953)
+|+.++++.+. ..| ....|..+.-+++ +.+++.+.++.|. +.-++.| +..+|.-++.+|...+.++
T Consensus 225 Eai~lLe~aL~--le~ah~~~ftel~il~~ky~p~k~~ehl~~~~---~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d 299 (449)
T 1b89_A 225 ELITMLEAALG--LERAHMGMFTELAILYSKFKPQKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYD 299 (449)
T ss_dssp HHHHHHHHHTT--STTCCHHHHHHHHHHHHTTCHHHHHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhC--CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHH
Confidence 99999988876 445 3344444444444 4555666666554 3334555 3677888999999999999
Q ss_pred HHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 037236 728 DAFKLIIEMPEEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEP 773 (953)
Q Consensus 728 eA~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p 773 (953)
.|...+-+-+ |++.--..+.....+-.|.|.--++..-.++-.|
T Consensus 300 ~A~~tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p 343 (449)
T 1b89_A 300 NAIITMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKP 343 (449)
T ss_dssp HHHHHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCG
T ss_pred HHHHHHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCH
Confidence 8887665432 2222223333333444444444444444443333
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.72 E-value=2.5e-16 Score=173.55 Aligned_cols=275 Identities=11% Similarity=0.023 Sum_probs=207.3
Q ss_pred hcCChhHHHH-HHHhccc---C----CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchH
Q 037236 519 HCEKSSSARV-LFDEMED---K----SLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALR 590 (953)
Q Consensus 519 ~~g~~~~A~~-~f~~~~~---~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 590 (953)
-.|++++|.. .|++... . +...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3456666666 6664432 1 24456677777777777777777777777653 234455666666777777777
Q ss_pred HHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHH---------------HHHHHHhc
Q 037236 591 LGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNA---------------IIGGHGIH 652 (953)
Q Consensus 591 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~---------------li~~~~~~ 652 (953)
.|...+..+.+.... +...+..++..|.+.|++++|...|+++. +.+...+.. .+..+...
T Consensus 116 ~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 116 LAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 777777777665432 56777888888888888888888888765 222222221 13334488
Q ss_pred CChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHH
Q 037236 653 GYGKEAIELFEKMLALGHKPD---TFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDD 728 (953)
Q Consensus 653 g~~~~A~~l~~~m~~~g~~P~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~e 728 (953)
|++++|+..|+++.+. .|+ ..++..+...+...|++++|..+|+.+.+. .|+ ...|..+..+|.+.|++++
T Consensus 195 ~~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 195 SLFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred ccHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999984 554 788999999999999999999999999773 455 7789999999999999999
Q ss_pred HHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC-----------cchHHHHHHHHHhcCCchHH
Q 037236 729 AFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDK-----------AENYVLVSNIYAGSEKWDDV 795 (953)
Q Consensus 729 A~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~-----------~~~~~~l~~~y~~~g~~~~a 795 (953)
|++.++++.. +.+..+|..+...+...|+++.|...+++++++.|++ +.++..++.+|...|++++|
T Consensus 270 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 270 AVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 9999988753 4567899999999999999999999999999999988 88999999999999999999
Q ss_pred HHHHH
Q 037236 796 RMMRQ 800 (953)
Q Consensus 796 ~~~~~ 800 (953)
..+.+
T Consensus 350 ~~~~~ 354 (368)
T 1fch_A 350 GAADA 354 (368)
T ss_dssp HHHHT
T ss_pred HHhHH
Confidence 98765
No 22
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.71 E-value=5.2e-15 Score=169.79 Aligned_cols=365 Identities=9% Similarity=0.001 Sum_probs=270.9
Q ss_pred chhHHHHHHHHHHh----cCCcccHHHHhccCCC-CChhhHHHHHHHHHh----cCChHHHHHHHHHhhhCCCCCCcchH
Q 037236 405 DELVANAFVVAYAK----CGSEISAENVFHGMDS-RTVSSWNALICGYAQ----NGDHLKALDYFLQMTHSDLEPDLFSI 475 (953)
Q Consensus 405 ~~~~~~~li~~y~~----~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~ 475 (953)
+......|...|.. .+++++|...|++..+ .+...+..|...|.. .+++++|+..|++..+.| +...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 44455555555555 5666666666655432 245566666666666 667777777777766654 33344
Q ss_pred HHHHHhhcc----ccccchhhHHHHHHHHhCCCCchhhHhhHHHHHHh----cCChhHHHHHHHhccc-CCcccHHHHHH
Q 037236 476 GSLILACTH----LKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMH----CEKSSSARVLFDEMED-KSLVSWNTMIA 546 (953)
Q Consensus 476 ~~ll~~~~~----~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~f~~~~~-~~~~~~~~li~ 546 (953)
..+-..+.. .++.++|...+....+.| +...+..|..+|.. .++.++|.+.|++..+ .+..++..+..
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~ 191 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGY 191 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 444444444 566777777777766655 45566667777776 6788888888887654 45667777777
Q ss_pred HHHh----cCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhcc----ccchHHHHHHHHHHHHcCCCCCccHHHHHHHHH
Q 037236 547 GYSQ----NKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQ----LSALRLGKETHCYALKAILTNDAFVACSIIDMY 618 (953)
Q Consensus 547 ~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 618 (953)
.|.+ .+++++|++.|++..+.| +...+..+-..+.. .++.++|...+....+.+ +...+..|..+|
T Consensus 192 ~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y 265 (490)
T 2xm6_A 192 MYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYIL 265 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHH
T ss_pred HHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 7877 788888888888887764 34455555555543 677888888888877764 556777788888
Q ss_pred Hh----cCCHHHHHHHhhhcC-CCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 037236 619 AK----CGCLEQSRRVFDRLK-DKDVTSWNAIIGGHGIH-----GYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAG 688 (953)
Q Consensus 619 ~~----~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g 688 (953)
.. .++.++|...|++.. ..+...+..+...|... ++.++|+..|++..+.| +...+..+...+...|
T Consensus 266 ~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g 342 (490)
T 2xm6_A 266 EQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLG 342 (490)
T ss_dssp HHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSC
T ss_pred HCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCC
Confidence 88 899999999999876 34677888888888887 89999999999999864 4567777888887766
Q ss_pred ---CHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCChhHHHHHHHHHHh----cCC
Q 037236 689 ---LVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGR----AGKLDDAFKLIIEMPEEADAGIWSSLLRSCRT----YGA 757 (953)
Q Consensus 689 ---~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~----~g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~~----~g~ 757 (953)
++++|.++|++..+. .++..+..|..+|.. .+++++|.+.+++.....++..+..|...+.. .+|
T Consensus 343 ~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d 418 (490)
T 2xm6_A 343 SEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERD 418 (490)
T ss_dssp CHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCC
T ss_pred CcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCC
Confidence 789999999999763 457788889999988 89999999999988766778899999999887 899
Q ss_pred hhHHHHHHHHHhccCCC---CcchHHHHHHHHHh
Q 037236 758 LKMGEKVAKTLLELEPD---KAENYVLVSNIYAG 788 (953)
Q Consensus 758 ~~~a~~~~~~~~~l~p~---~~~~~~~l~~~y~~ 788 (953)
.++|...++++++.+|+ ++.+...|+.++..
T Consensus 419 ~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 419 YVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 99999999999999954 78787878777664
No 23
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.71 E-value=2.1e-15 Score=159.31 Aligned_cols=219 Identities=10% Similarity=0.024 Sum_probs=121.7
Q ss_pred HHHHHhcCChhHHHHHHHhcccCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHH
Q 037236 514 LSLYMHCEKSSSARVLFDEMEDKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGK 593 (953)
Q Consensus 514 i~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 593 (953)
..+|...|+++.|...++....++..++..+...+...|+.++|++.++++...+..|+
T Consensus 41 ~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~--------------------- 99 (291)
T 3mkr_A 41 YRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVT--------------------- 99 (291)
T ss_dssp HHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCS---------------------
T ss_pred HHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCC---------------------
Confidence 34455555555555544443333334444455555555555555555555554443343
Q ss_pred HHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 037236 594 ETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPD 673 (953)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~ 673 (953)
+...+..+...|...|++++|.+.|++ ..+...+..++..|.+.|+.++|++.|+++.+. .|+
T Consensus 100 -------------~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~ 162 (291)
T 3mkr_A 100 -------------NTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--DED 162 (291)
T ss_dssp -------------CHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred -------------CHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CcC
Confidence 344455556677777777777777776 456666777777777777777777777777763 454
Q ss_pred HHHH---HHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhHHHHHHH
Q 037236 674 TFTF---VGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSSLLR 750 (953)
Q Consensus 674 ~~t~---~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~~~~~~~ll~ 750 (953)
.... ..++..+...|++++|..+|+++.+. . ++++.+|+.+..
T Consensus 163 ~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~---~-------------------------------p~~~~~~~~la~ 208 (291)
T 3mkr_A 163 ATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK---C-------------------------------SPTLLLLNGQAA 208 (291)
T ss_dssp CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH---S-------------------------------CCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh---C-------------------------------CCcHHHHHHHHH
Confidence 3211 11222233345666666666666543 1 234445555555
Q ss_pred HHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHH-HHHHHHHHH
Q 037236 751 SCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDV-RMMRQRMKE 804 (953)
Q Consensus 751 ~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a-~~~~~~m~~ 804 (953)
++...|++++|+..++++++++|+++.++..++.++...|+++++ .++++++.+
T Consensus 209 ~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 209 CHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 555555555556666666666666666666666666666666543 345444443
No 24
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.68 E-value=4.5e-14 Score=163.77 Aligned_cols=208 Identities=9% Similarity=0.016 Sum_probs=163.5
Q ss_pred HHHHHHHHHHHcCCCCCccHHHHHHHHHHh-------cCCHH-------HHHHHhhhcCC----CCHHHHHHHHHHHHhc
Q 037236 591 LGKETHCYALKAILTNDAFVACSIIDMYAK-------CGCLE-------QSRRVFDRLKD----KDVTSWNAIIGGHGIH 652 (953)
Q Consensus 591 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~-------~g~~~-------~A~~~~~~~~~----~~~~~~~~li~~~~~~ 652 (953)
.+..+++.+++... .+..+|..++..+.+ .|+++ +|..+|++... .+...|..++..+...
T Consensus 256 ~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 55667777776532 367788888888876 68877 89999998752 3578899999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHH-HhhcCCHHH
Q 037236 653 GYGKEAIELFEKMLALGHKPDT--FTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDM-LGRAGKLDD 728 (953)
Q Consensus 653 g~~~~A~~l~~~m~~~g~~P~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~-l~~~g~~~e 728 (953)
|++++|..+|+++++ +.|+. ..|..++..+.+.|++++|..+|++..+ ..|. ...|...+.+ +...|+.++
T Consensus 335 g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~---~~~~~~~~~~~~a~~~~~~~~~~~~ 409 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---DARTRHHVYVTAALMEYYCSKDKSV 409 (530)
T ss_dssp TCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---CTTCCTHHHHHHHHHHHHHTCCHHH
T ss_pred CCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh---ccCCchHHHHHHHHHHHHHcCChhH
Confidence 999999999999998 56743 4788888888889999999999999876 3343 3333333222 346899999
Q ss_pred HHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcc----hHHHHHHHHHhcCCchHHHHHHHHH
Q 037236 729 AFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAE----NYVLVSNIYAGSEKWDDVRMMRQRM 802 (953)
Q Consensus 729 A~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~----~~~~l~~~y~~~g~~~~a~~~~~~m 802 (953)
|.++|++... +.++.+|..++......|+.+.|..+++++++..|.++. .+..........|+.+.+..+.+.+
T Consensus 410 A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 410 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999987653 346789999999999999999999999999998877665 6666778888899999999988877
Q ss_pred HH
Q 037236 803 KE 804 (953)
Q Consensus 803 ~~ 804 (953)
.+
T Consensus 490 ~~ 491 (530)
T 2ooe_A 490 FT 491 (530)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.67 E-value=9.2e-16 Score=168.85 Aligned_cols=251 Identities=11% Similarity=0.072 Sum_probs=181.3
Q ss_pred hHhhHHHHHHhcCChhHHHHHHHhccc---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhcc
Q 037236 509 TGISLLSLYMHCEKSSSARVLFDEMED---KSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQ 585 (953)
Q Consensus 509 ~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 585 (953)
.+..+...|.+.|++++|...|+++.+ .+..+|..+...|.+.|++++|+..|+++.+. .|
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p-------------- 130 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLEL--QP-------------- 130 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT--------------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CC--------------
Confidence 344455555555555555555555432 23345555555555555555555555555443 12
Q ss_pred ccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCC--CC-----------HHHHHHHHHHHHhc
Q 037236 586 LSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKD--KD-----------VTSWNAIIGGHGIH 652 (953)
Q Consensus 586 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~-----------~~~~~~li~~~~~~ 652 (953)
.+...+..++..|.+.|++++|...|+++.. |+ ...+..+...+...
T Consensus 131 --------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~ 190 (365)
T 4eqf_A 131 --------------------NNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDS 190 (365)
T ss_dssp --------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CC
T ss_pred --------------------CCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhh
Confidence 1456677778888888888888888887752 21 22334557888999
Q ss_pred CChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHH
Q 037236 653 GYGKEAIELFEKMLALGHKP---DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDD 728 (953)
Q Consensus 653 g~~~~A~~l~~~m~~~g~~P---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~e 728 (953)
|++++|++.|+++.+. .| +..++..+...+...|++++|..+|+++.+. .|+ ...|..+..+|.+.|++++
T Consensus 191 g~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~ 265 (365)
T 4eqf_A 191 SVLEGVKELYLEAAHQ--NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV---RPEDYSLWNRLGATLANGDRSEE 265 (365)
T ss_dssp HHHHHHHHHHHHHHHH--SCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred hhHHHHHHHHHHHHHh--CcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999985 45 5788999999999999999999999999773 454 7789999999999999999
Q ss_pred HHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCC------------CcchHHHHHHHHHhcCCchH
Q 037236 729 AFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPD------------KAENYVLVSNIYAGSEKWDD 794 (953)
Q Consensus 729 A~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~------------~~~~~~~l~~~y~~~g~~~~ 794 (953)
|++.++++.. +.++.+|..+...+...|+++.|...+++++++.|+ +...+..|+.++...|+.+.
T Consensus 266 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 345 (365)
T 4eqf_A 266 AVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPEL 345 (365)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHH
Confidence 9999988753 345789999999999999999999999999999887 36778999999999999998
Q ss_pred HHHHHH
Q 037236 795 VRMMRQ 800 (953)
Q Consensus 795 a~~~~~ 800 (953)
+.++.+
T Consensus 346 a~~~~~ 351 (365)
T 4eqf_A 346 FQAANL 351 (365)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 887654
No 26
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.67 E-value=2.3e-15 Score=165.79 Aligned_cols=239 Identities=12% Similarity=0.078 Sum_probs=162.3
Q ss_pred chhhHhhHHHHHHhcCChhHHHHHHHhccc---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 037236 506 DSFTGISLLSLYMHCEKSSSARVLFDEMED---KSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSA 582 (953)
Q Consensus 506 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 582 (953)
+...+..+...|.+.|++++|.+.|+++.+ .+..+|..+...|...|++++|++.|+++.... |+.......+
T Consensus 97 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~-- 172 (368)
T 1fch_A 97 HMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPA-- 172 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC----
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHH--
Confidence 445566677777888888888888876653 355678888888888888888888888888753 3322111000
Q ss_pred hccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC--CC---CHHHHHHHHHHHHhcCChHH
Q 037236 583 CSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK--DK---DVTSWNAIIGGHGIHGYGKE 657 (953)
Q Consensus 583 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~---~~~~~~~li~~~~~~g~~~~ 657 (953)
+.... .......+..+...+ +.|++++|...|+++. .| +..+|..+...|...|++++
T Consensus 173 ----~~~~~------------~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~ 235 (368)
T 1fch_A 173 ----EEGAG------------GAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDK 235 (368)
T ss_dssp -----------------------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHH
T ss_pred ----HHHhh------------hhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHH
Confidence 00000 000001111222333 6777888888887765 22 46778888888888888888
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHh
Q 037236 658 AIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIE 735 (953)
Q Consensus 658 A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~ 735 (953)
|+..|+++++. .| +..++..+...+...|++++|..+|+++.+. .|+ ...+..+..+|.+.|++++|.+.+++
T Consensus 236 A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 310 (368)
T 1fch_A 236 AVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL---QPGYIRSRYNLGISCINLGAHREAVEHFLE 310 (368)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 88888888773 45 5667788888888888888888888887663 344 66778888888888888888888776
Q ss_pred CCC--CCC-----------hhHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 037236 736 MPE--EAD-----------AGIWSSLLRSCRTYGALKMGEKVAKTLLE 770 (953)
Q Consensus 736 ~~~--~~~-----------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 770 (953)
+.. +.+ ..+|..+..++...|+.+.|..+.++.++
T Consensus 311 al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 311 ALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp HHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred HHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 542 112 57888888888888998888888876654
No 27
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.67 E-value=1.6e-13 Score=157.46 Aligned_cols=352 Identities=12% Similarity=0.011 Sum_probs=296.1
Q ss_pred CCChhhHHHHHHHHHh----cCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhcc----ccccchhhHHHHHHHHhCCCC
Q 037236 434 SRTVSSWNALICGYAQ----NGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTH----LKSLHRGKEIHGFVIRNGLEG 505 (953)
Q Consensus 434 ~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~i~~~~~~~g~~~ 505 (953)
..++..+..+...|.. .+++++|+..|++..+.| +...+..+-..+.. .++.+.|.+.+....+.|
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 109 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--- 109 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 3467778888888888 899999999999998865 44566666666766 889999999999998876
Q ss_pred chhhHhhHHHHHHh----cCChhHHHHHHHhcccC-CcccHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCChhhH
Q 037236 506 DSFTGISLLSLYMH----CEKSSSARVLFDEMEDK-SLVSWNTMIAGYSQ----NKLPVEAIVLFRRMFSIGVQPCEISI 576 (953)
Q Consensus 506 ~~~~~~~li~~y~~----~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~ 576 (953)
+...+..|..+|.. .+++++|.+.|++..+. +..++..|...|.. .+++++|++.|++..+.| +...+
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~ 186 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSC 186 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 56677788889988 78999999999987654 56678888888887 789999999999998875 45666
Q ss_pred HHHHHHhcc----ccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHh----cCCHHHHHHHhhhcC-CCCHHHHHHHHH
Q 037236 577 VSILSACSQ----LSALRLGKETHCYALKAILTNDAFVACSIIDMYAK----CGCLEQSRRVFDRLK-DKDVTSWNAIIG 647 (953)
Q Consensus 577 ~~ll~a~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~-~~~~~~~~~li~ 647 (953)
..+-..+.. .++.++|...+....+.+ +......|..+|.. .++.++|...|++.. ..+...+..+..
T Consensus 187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~ 263 (490)
T 2xm6_A 187 NQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGY 263 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 666666665 789999999999998876 66788889999987 899999999999876 456778888888
Q ss_pred HHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 037236 648 GHGI----HGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHA-----GLVENGLKYFSQMQKLHAVKPKLEHYACVVD 718 (953)
Q Consensus 648 ~~~~----~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~-----g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~ 718 (953)
.|.. .++.++|++.|++..+.| +...+..+...+... +++++|..+|+...+. .+...+..|..
T Consensus 264 ~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~ 336 (490)
T 2xm6_A 264 ILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQANLGA 336 (490)
T ss_dssp HHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHH
Confidence 8887 899999999999998864 556777788888877 8999999999999762 24567888888
Q ss_pred HHhhcC---CHHHHHHHHHhCCCCCChhHHHHHHHHHHh----cCChhHHHHHHHHHhccCCCCcchHHHHHHHHHh---
Q 037236 719 MLGRAG---KLDDAFKLIIEMPEEADAGIWSSLLRSCRT----YGALKMGEKVAKTLLELEPDKAENYVLVSNIYAG--- 788 (953)
Q Consensus 719 ~l~~~g---~~~eA~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~--- 788 (953)
+|.+.| ++++|++.+++.....++..|..|...+.. .+|.+.|...++++.+.. ++.++..|+.+|..
T Consensus 337 ~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g 414 (490)
T 2xm6_A 337 IYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLG 414 (490)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSS
T ss_pred HHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCC
Confidence 888867 889999999988766788999999999988 899999999999998864 68899999999999
Q ss_pred -cCCchHHHHHHHHHHHCC
Q 037236 789 -SEKWDDVRMMRQRMKERG 806 (953)
Q Consensus 789 -~g~~~~a~~~~~~m~~~~ 806 (953)
.+++++|...+++..+.+
T Consensus 415 ~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 415 VERDYVQAWAWFDTASTND 433 (490)
T ss_dssp SCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCC
Confidence 899999999998887755
No 28
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.66 E-value=3.6e-14 Score=164.61 Aligned_cols=369 Identities=11% Similarity=0.038 Sum_probs=238.0
Q ss_pred HHHHHHHhccccchHHHHHHHHHHHHcCCCCchhHHHHHHH-HHHhcCCcccHHH----HhccC------CCCChhhHHH
Q 037236 374 VLNVLTSCSEKSELLSLKELHGYSLRHGFDNDELVANAFVV-AYAKCGSEISAEN----VFHGM------DSRTVSSWNA 442 (953)
Q Consensus 374 ~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~-~y~~~g~~~~A~~----~f~~~------~~~~~~~~~~ 442 (953)
|...+..+.+.|+.+.+..++..+++. .|+...+..++. .....|+.+.|.+ +|+.. ...+...|..
T Consensus 49 w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~ 126 (530)
T 2ooe_A 49 WKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVD 126 (530)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHH
Confidence 333333344444444444444444433 245556666664 3345688887765 55543 1235667887
Q ss_pred HHHHHHh---------cCChHHHHHHHHHhhhCCCCCCc---chHHHHHHhhccccccchhhHHHHHHHHhCCCCchhhH
Q 037236 443 LICGYAQ---------NGDHLKALDYFLQMTHSDLEPDL---FSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTG 510 (953)
Q Consensus 443 li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~~---~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~ 510 (953)
.+....+ .|++++|..+|++.+.. |+. ..|..........+. .+.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~~~~~~~~~~~~~e~~~~~--------------------~~~ 183 (530)
T 2ooe_A 127 YINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMINIEQLWRDYNKYEEGINI--------------------HLA 183 (530)
T ss_dssp HHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCTTHHHHHHHHHHHHHHHCH--------------------HHH
T ss_pred HHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhhhHHHHHHHHHHHHHhhch--------------------hHH
Confidence 7776554 67888888898888872 322 122211110000000 000
Q ss_pred hhHHHHHHhcCChhHHHHHHHh-------ccc------CC--------cccHHHHHHHHHhc----CCh----hHHHHHH
Q 037236 511 ISLLSLYMHCEKSSSARVLFDE-------MED------KS--------LVSWNTMIAGYSQN----KLP----VEAIVLF 561 (953)
Q Consensus 511 ~~li~~y~~~g~~~~A~~~f~~-------~~~------~~--------~~~~~~li~~~~~~----g~~----~~A~~~~ 561 (953)
..++. .+.++++.|..++.. +.. |+ ...|...+.-...+ ++. ++|+.+|
T Consensus 184 ~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y 261 (530)
T 2ooe_A 184 KKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAY 261 (530)
T ss_dssp HHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHH
T ss_pred HHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHH
Confidence 11110 123445555555543 111 11 23455554333222 122 3677888
Q ss_pred HHHHHcCCCCChhhHHHHHHHhcc-------ccchH-------HHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHH
Q 037236 562 RRMFSIGVQPCEISIVSILSACSQ-------LSALR-------LGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQS 627 (953)
Q Consensus 562 ~~m~~~g~~p~~~t~~~ll~a~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A 627 (953)
++..... +-+...|......+.+ .|+++ .|..+++..++.-.+.+..++..++..+.+.|++++|
T Consensus 262 ~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A 340 (530)
T 2ooe_A 262 EQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKV 340 (530)
T ss_dssp HHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHH
Confidence 8887752 2244555555555543 67776 7888888887632334678899999999999999999
Q ss_pred HHHhhhcC--CC-CH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHH-HHhcCCHHHHHHHHHHHH
Q 037236 628 RRVFDRLK--DK-DV-TSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMA-CNHAGLVENGLKYFSQMQ 701 (953)
Q Consensus 628 ~~~~~~~~--~~-~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a-~~~~g~~~~a~~~~~~m~ 701 (953)
..+|+++. .| +. ..|..++..+.+.|+.++|.++|++.++. .| +...+...+.. +...|++++|..+|+..+
T Consensus 341 ~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al 418 (530)
T 2ooe_A 341 HSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGL 418 (530)
T ss_dssp HHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 99999876 34 43 58999999999999999999999999984 44 33344433333 336899999999999998
Q ss_pred HhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCCC-C-C----hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 037236 702 KLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPEE-A-D----AGIWSSLLRSCRTYGALKMGEKVAKTLLELEPD 774 (953)
Q Consensus 702 ~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~-~-~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~ 774 (953)
+.. |+ ...|..+++.+.+.|+.++|..+|++.... | + ..+|...+.....+|+.+.+..+.+++.+..|+
T Consensus 419 ~~~---p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 419 KKY---GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHH---TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHC---CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 754 54 788999999999999999999999987431 2 2 348999999999999999999999999999885
Q ss_pred C
Q 037236 775 K 775 (953)
Q Consensus 775 ~ 775 (953)
+
T Consensus 496 ~ 496 (530)
T 2ooe_A 496 E 496 (530)
T ss_dssp H
T ss_pred h
Confidence 3
No 29
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.66 E-value=2e-14 Score=164.25 Aligned_cols=279 Identities=14% Similarity=0.011 Sum_probs=175.5
Q ss_pred CChhHHHHHHHhccc--C-CcccHHHHHHH---HHhcCChhHHHHHHHHHHHcCCCCC-hhhHHHHHHHhc----cccch
Q 037236 521 EKSSSARVLFDEMED--K-SLVSWNTMIAG---YSQNKLPVEAIVLFRRMFSIGVQPC-EISIVSILSACS----QLSAL 589 (953)
Q Consensus 521 g~~~~A~~~f~~~~~--~-~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~----~~~~~ 589 (953)
+++++|...|++..+ | ++..+..+... +...++.++|++.|++..+. .|+ ...+..+...+. ..+..
T Consensus 152 ~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l--~p~~~~~~~~l~~~~~~~~~~~~~~ 229 (472)
T 4g1t_A 152 NQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--NPDNQYLKVLLALKLHKMREEGEEE 229 (472)
T ss_dssp THHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--CSSCHHHHHHHHHHHHHCC------
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc--CCcchHHHHHHHHHHHHHHhhhhHH
Confidence 457788888877653 3 33444444443 34457778888888877765 343 333333333332 34567
Q ss_pred HHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhc--------------
Q 037236 590 RLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIH-------------- 652 (953)
Q Consensus 590 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~-------------- 652 (953)
+++.+.+..+.+.... +..++..+...|.+.|++++|...|++.. +.+..+|..+...|...
T Consensus 230 ~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~ 308 (472)
T 4g1t_A 230 GEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYG 308 (472)
T ss_dssp CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred HHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 7888888777765433 56677888889999999999999988775 44566777776665432
Q ss_pred -----CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChh----HHHHHHH-HHh
Q 037236 653 -----GYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLE----HYACVVD-MLG 721 (953)
Q Consensus 653 -----g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~----~~~~lv~-~l~ 721 (953)
+..++|+..|++..+ ..| +..++..+...+...|++++|...|++..+ +.|+.. .+..+.. .+.
T Consensus 309 ~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~---~~~~~~~~~~~~~~~~~~~~~ 383 (472)
T 4g1t_A 309 KRKLLELIGHAVAHLKKADE--ANDNLFRVCSILASLHALADQYEEAEYYFQKEFS---KELTPVAKQLLHLRYGNFQLY 383 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH---SCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHhh--cCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHh---cCCCChHHHHHHHHHHHHHHH
Confidence 336778888888887 456 556788899999999999999999999876 344422 2233333 245
Q ss_pred hcCCHHHHHHHHHhCC-CCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHH
Q 037236 722 RAGKLDDAFKLIIEMP-EEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQ 800 (953)
Q Consensus 722 ~~g~~~eA~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 800 (953)
..|++++|++.+++.. ..|+...+... .+.++..+++.++.+|+++.+|..||.+|...|++++|.+.++
T Consensus 384 ~~~~~~~Ai~~y~kal~i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~ 454 (472)
T 4g1t_A 384 QMKCEDKAIHHFIEGVKINQKSREKEKM---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSE 454 (472)
T ss_dssp TSSCHHHHHHHHHHHHHSCCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------
T ss_pred HCCCHHHHHHHHHHHHhcCcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7899999999998764 35665444333 2355677888999999999999999999999999999999988
Q ss_pred HHHHCCCccCCceeEE
Q 037236 801 RMKERGLQKEAGCSWI 816 (953)
Q Consensus 801 ~m~~~~~~~~~~~s~i 816 (953)
+.-+.+-......+|+
T Consensus 455 kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 455 RGLESGSLIPSASSWN 470 (472)
T ss_dssp ----------------
T ss_pred HHHhcCCCCCcHhhcC
Confidence 8776554433344454
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.65 E-value=3.4e-15 Score=161.16 Aligned_cols=252 Identities=9% Similarity=0.050 Sum_probs=187.2
Q ss_pred hhHhhHHHHHHhcCChhHHHHHHHhccc---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhc
Q 037236 508 FTGISLLSLYMHCEKSSSARVLFDEMED---KSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACS 584 (953)
Q Consensus 508 ~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 584 (953)
..+..+...+...|++++|..+|+++.+ .+...|..+...+.+.|++++|++.|+++.+.. |+
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~------------ 87 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PK------------ 87 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cC------------
Confidence 3344555566666666666666666542 234456666666666666666666666665542 21
Q ss_pred cccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHH--------------HH
Q 037236 585 QLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAI--------------IG 647 (953)
Q Consensus 585 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~l--------------i~ 647 (953)
+...+..+...|.+.|++++|...|+++. +.+...+..+ ..
T Consensus 88 ----------------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (327)
T 3cv0_A 88 ----------------------DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSED 145 (327)
T ss_dssp ----------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------
T ss_pred ----------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHh
Confidence 34455566666666777777777666654 1122222222 22
Q ss_pred -HHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcC
Q 037236 648 -GHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAG 724 (953)
Q Consensus 648 -~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g 724 (953)
.+...|++++|++.++++.+. .| +..++..+...+...|++++|..+++.+.+. .|+ ...+..+...|.+.|
T Consensus 146 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~ 220 (327)
T 3cv0_A 146 FFFAAPNEYRECRTLLHAALEM--NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL---RPDDAQLWNKLGATLANGN 220 (327)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHcccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcC
Confidence 377788999999999999984 45 6788899999999999999999999999763 454 778899999999999
Q ss_pred CHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCC------------CcchHHHHHHHHHhcC
Q 037236 725 KLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPD------------KAENYVLVSNIYAGSE 790 (953)
Q Consensus 725 ~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~------------~~~~~~~l~~~y~~~g 790 (953)
++++|.+.++++.. +.+..+|..+...+...|+++.|...+++++++.|+ ++..+..++.+|...|
T Consensus 221 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 300 (327)
T 3cv0_A 221 RPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMN 300 (327)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcC
Confidence 99999999988753 346789999999999999999999999999999999 7899999999999999
Q ss_pred CchHHHHHHH
Q 037236 791 KWDDVRMMRQ 800 (953)
Q Consensus 791 ~~~~a~~~~~ 800 (953)
++++|..+.+
T Consensus 301 ~~~~A~~~~~ 310 (327)
T 3cv0_A 301 RPDLVELTYA 310 (327)
T ss_dssp CHHHHHHHTT
T ss_pred CHHHHHHHHH
Confidence 9999998765
No 31
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.64 E-value=5.2e-15 Score=162.81 Aligned_cols=230 Identities=8% Similarity=-0.027 Sum_probs=193.2
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHH
Q 037236 537 SLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIID 616 (953)
Q Consensus 537 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 616 (953)
+...|..+...+.+.|++++|+..|+++.+. .|+ +...+..++.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~----------------------------------~~~~~~~lg~ 107 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQ--DPG----------------------------------DAEAWQFLGI 107 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTT----------------------------------CHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcC----------------------------------CHHHHHHHHH
Confidence 4556888888999999999999999988875 343 5567788899
Q ss_pred HHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-----------HHHHHHHH
Q 037236 617 MYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDT-----------FTFVGILM 682 (953)
Q Consensus 617 ~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~-----------~t~~~ll~ 682 (953)
.|.+.|++++|...|+++. +.+..+|..+...|...|++++|+..|+++.+ ..|+. ..+..+..
T Consensus 108 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~l~~ 185 (365)
T 4eqf_A 108 TQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIK--QNPKYKYLVKNKKGSPGLTRRMSK 185 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCHHHHCC----------------
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHH--hCccchHHHhhhccchHHHHHHHH
Confidence 9999999999999999876 45688999999999999999999999999998 45632 22234578
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhH
Q 037236 683 ACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKM 760 (953)
Q Consensus 683 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~ 760 (953)
.+...|++++|..+|+++.+..+-.++...+..+..+|.+.|++++|++.++++.. +.++.+|..++..+...|+++.
T Consensus 186 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 265 (365)
T 4eqf_A 186 SPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEE 265 (365)
T ss_dssp ---CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 89999999999999999988544433578899999999999999999999998754 4568899999999999999999
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 761 GEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 761 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
|...++++++++|+++.++..++.+|...|++++|...++++.+
T Consensus 266 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 309 (365)
T 4eqf_A 266 AVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALS 309 (365)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998887765
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.60 E-value=4.6e-14 Score=148.99 Aligned_cols=246 Identities=11% Similarity=0.056 Sum_probs=175.5
Q ss_pred HHHHHHHHhcCCcccHHHHhccCCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccc
Q 037236 410 NAFVVAYAKCGSEISAENVFHGMDSRTVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLH 489 (953)
Q Consensus 410 ~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 489 (953)
..+..+|...|+++.|...++....++..++..+...+...|+.++|++.++++...+..|+..
T Consensus 38 ~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~---------------- 101 (291)
T 3mkr_A 38 VFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNT---------------- 101 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCH----------------
T ss_pred HHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCH----------------
Confidence 3455677777888888877776555566677777777888888888888888877665555533
Q ss_pred hhhHHHHHHHHhCCCCchhhHhhHHHHHHhcCChhHHHHHHHhcccCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 037236 490 RGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMEDKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGV 569 (953)
Q Consensus 490 ~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 569 (953)
..+..+...|.+.|++++|.+.|++ ..+...+..++..|.+.|++++|.+.|+++.+.
T Consensus 102 ------------------~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 159 (291)
T 3mkr_A 102 ------------------TFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ-- 159 (291)
T ss_dssp ------------------HHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred ------------------HHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--
Confidence 3344555678889999999999988 456778888999999999999999999999876
Q ss_pred CCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHH
Q 037236 570 QPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAII 646 (953)
Q Consensus 570 ~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li 646 (953)
.|+... ..+ ..+++..+...|++++|..+|+++. +.++..|+.+.
T Consensus 160 ~p~~~~-~~l-------------------------------~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la 207 (291)
T 3mkr_A 160 DEDATL-TQL-------------------------------ATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQA 207 (291)
T ss_dssp CTTCHH-HHH-------------------------------HHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred CcCcHH-HHH-------------------------------HHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 354321 111 1122334445577888888888775 45777888888
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHhcCCCCChhHHHHHHHHHhhcC
Q 037236 647 GGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVEN-GLKYFSQMQKLHAVKPKLEHYACVVDMLGRAG 724 (953)
Q Consensus 647 ~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~-a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g 724 (953)
.++...|++++|++.|++.++ ..| +..++..++..+...|+.++ +.++++++.+ +.|+-. .+.+...+.+
T Consensus 208 ~~~~~~g~~~eA~~~l~~al~--~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~---~~P~~~---~~~d~~~~~~ 279 (291)
T 3mkr_A 208 ACHMAQGRWEAAEGVLQEALD--KDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD---AHRSHP---FIKEYRAKEN 279 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH---HCTTCH---HHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH---hCCCCh---HHHHHHHHHH
Confidence 888888888888888888887 466 66778888888888888865 5678887766 445522 2345566666
Q ss_pred CHHHHHHHH
Q 037236 725 KLDDAFKLI 733 (953)
Q Consensus 725 ~~~eA~~~~ 733 (953)
.+++|..-|
T Consensus 280 ~fd~~~~~~ 288 (291)
T 3mkr_A 280 DFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 666665544
No 33
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.60 E-value=1.6e-14 Score=145.48 Aligned_cols=193 Identities=15% Similarity=0.072 Sum_probs=161.0
Q ss_pred CCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 037236 605 TNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGI 680 (953)
Q Consensus 605 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~l 680 (953)
+++...+..+...+.+.|++++|...|++.. +.+...|..+...+...|++++|+..|++.++ ..| +...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA--RTPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHH
Confidence 3467788889999999999999999999875 45788999999999999999999999999999 577 56788899
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCChhHHHH
Q 037236 681 LMACNHA-----------GLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE-EADAGIWSS 747 (953)
Q Consensus 681 l~a~~~~-----------g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~~~~~~~~ 747 (953)
..++... |++++|+..|++.++ +.|+ ...+..+..+|...|++++|++.+++... ..++.+|..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAER---VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence 9999999 999999999999987 5676 77889999999999999999999987642 277889999
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 037236 748 LLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRM 802 (953)
Q Consensus 748 ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 802 (953)
+...+...|++++|...++++++++|+++.++..++.+|...|++++|...++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998877643
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.59 E-value=2e-13 Score=147.24 Aligned_cols=273 Identities=11% Similarity=0.033 Sum_probs=148.0
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccchhhHHHHHHHHhCCCCchhhHhhHHH
Q 037236 436 TVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLS 515 (953)
Q Consensus 436 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 515 (953)
+...|..+...+...|++++|+.+|+++.+.. |+ +...+..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~----------------------------------~~~~~~~l~~ 63 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA--PE----------------------------------REEAWRSLGL 63 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT----------------------------------CHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CC----------------------------------CHHHHHHHHH
Confidence 45567788888889999999999999887642 21 2334445566
Q ss_pred HHHhcCChhHHHHHHHhccc---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHH-HHhccccchHH
Q 037236 516 LYMHCEKSSSARVLFDEMED---KSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSIL-SACSQLSALRL 591 (953)
Q Consensus 516 ~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~~~~~~~~ 591 (953)
.|.+.|++++|...|+++.+ .+...|..+...|...|++++|++.|+++.+.. |+.......+ ..+
T Consensus 64 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~-------- 133 (327)
T 3cv0_A 64 TQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQAD-------- 133 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTTTC----------------
T ss_pred HHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHH--------
Confidence 67777777777777776643 345677778888888888888888888887753 3322221111 000
Q ss_pred HHHHHHHHHHcCCCCCccHHHHH-HH-HHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 037236 592 GKETHCYALKAILTNDAFVACSI-ID-MYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKML 666 (953)
Q Consensus 592 a~~~~~~~~~~~~~~~~~~~~~l-i~-~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 666 (953)
++......+ .. .+...|++++|...|+++. +.+...|..+...|...|++++|++.++++.
T Consensus 134 --------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 199 (327)
T 3cv0_A 134 --------------VDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAV 199 (327)
T ss_dssp --------------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 000000011 11 1333444444444444433 2244455555555555555555555555555
Q ss_pred HCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CC---
Q 037236 667 ALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE-EA--- 740 (953)
Q Consensus 667 ~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~--- 740 (953)
+. .| +..++..+...+...|++++|..+|+++.+. .|+ ...+..+..+|.+.|++++|.+.++++.. .|
T Consensus 200 ~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 274 (327)
T 3cv0_A 200 EL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDI---NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGT 274 (327)
T ss_dssp HH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSC
T ss_pred Hh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccc
Confidence 42 33 3444555555555555555555555555442 222 44455555555555555555555544321 11
Q ss_pred ----------ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 037236 741 ----------DAGIWSSLLRSCRTYGALKMGEKVAKTLLELEP 773 (953)
Q Consensus 741 ----------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p 773 (953)
+..+|..+..++...|+.+.|...++++++..|
T Consensus 275 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 275 TPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317 (327)
T ss_dssp C-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred cccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 244555666666666666666666655555433
No 35
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.58 E-value=1.2e-13 Score=157.67 Aligned_cols=380 Identities=11% Similarity=-0.004 Sum_probs=217.4
Q ss_pred hhhHHHHHHHhccccchHHHHHHHHHHHHc-----C---CCCchhHHHHHHHHHHhcCCcccHHHHhccCC-------C-
Q 037236 371 EVTVLNVLTSCSEKSELLSLKELHGYSLRH-----G---FDNDELVANAFVVAYAKCGSEISAENVFHGMD-------S- 434 (953)
Q Consensus 371 ~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~-----g---~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~-------~- 434 (953)
...|+.+-..+...|+.+.|.+.+...++. + -+....+++.+..+|...|++++|...|++.. .
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 345667777777888899888888776653 1 12234567888888888888888887776532 1
Q ss_pred ---CChhhHHHHHHHHHh--cCChHHHHHHHHHhhhCCCCCCcc-hHHHHHHh---hccccccchhhHHHHHHHHhCCCC
Q 037236 435 ---RTVSSWNALICGYAQ--NGDHLKALDYFLQMTHSDLEPDLF-SIGSLILA---CTHLKSLHRGKEIHGFVIRNGLEG 505 (953)
Q Consensus 435 ---~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~---~~~~~~~~~a~~i~~~~~~~g~~~ 505 (953)
....+++.+..++.. .+++++|++.|++..+. .|+.. .+..+..+ +...++.+.+.+.+...++..+.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~- 207 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD- 207 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-
Confidence 123455555555544 34688888888888764 34433 33333333 33445667777777777776543
Q ss_pred chhhHhhHHHHHHh----cCChhHHHHHHHhccc---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhh-HH
Q 037236 506 DSFTGISLLSLYMH----CEKSSSARVLFDEMED---KSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEIS-IV 577 (953)
Q Consensus 506 ~~~~~~~li~~y~~----~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~ 577 (953)
+..++..+...+.. .|+.++|.+.|++... .+...|..+...|.+.|++++|+..|++..+. .|+... +.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHH
Confidence 33444444444433 4567788888876643 34557778888888888888888888888765 454332 22
Q ss_pred HHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCC
Q 037236 578 SILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGY 654 (953)
Q Consensus 578 ~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~ 654 (953)
.+-.++...+.. ..... ...........+..++|...|++.. +.+..+|..+...|...|+
T Consensus 286 ~lg~~y~~~~~~---------~~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~ 349 (472)
T 4g1t_A 286 QIGCCYRAKVFQ---------VMNLR-------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQ 349 (472)
T ss_dssp HHHHHHHHHHHH---------HHHC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHH---------hhhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhcc
Confidence 222222111000 00000 0001111112234567777777654 4456688899999999999
Q ss_pred hHHHHHHHHHHHHCCCCCCH--HHHHHHHH-HHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHH
Q 037236 655 GKEAIELFEKMLALGHKPDT--FTFVGILM-ACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFK 731 (953)
Q Consensus 655 ~~~A~~l~~~m~~~g~~P~~--~t~~~ll~-a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~ 731 (953)
+++|++.|++.++....|.. ..+..+.. ...+.|+.++|+..|++.++ +.|+....... .+.+.+
T Consensus 350 ~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~---------~~~l~~ 417 (472)
T 4g1t_A 350 YEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKM---------KDKLQK 417 (472)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHH---------HHHHHH
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHH---------HHHHHH
Confidence 99999999999985433322 12333333 34578999999999999876 66764332222 233334
Q ss_pred HHHhCC--CCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHH
Q 037236 732 LIIEMP--EEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVS 783 (953)
Q Consensus 732 ~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~ 783 (953)
++++.. .+.++.+|..|+..+...|++++|...+++++++.|.+|.+...+|
T Consensus 418 ~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 418 IAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 444332 1456789999999999999999999999999999999998776654
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.58 E-value=1.2e-13 Score=143.33 Aligned_cols=217 Identities=14% Similarity=0.067 Sum_probs=177.3
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHH
Q 037236 539 VSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMY 618 (953)
Q Consensus 539 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 618 (953)
..|..+...+...|++++|+..|++..+.. + +...+..+...|
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~-----------------------------------~~~~~~~~~~~~ 48 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--K-----------------------------------DITYLNNRAAAE 48 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--C-----------------------------------CTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--c-----------------------------------cHHHHHHHHHHH
Confidence 356667777888888888888888877654 3 455566677777
Q ss_pred HhcCCHHHHHHHhhhcCC--C-C-------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 037236 619 AKCGCLEQSRRVFDRLKD--K-D-------VTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAG 688 (953)
Q Consensus 619 ~~~g~~~~A~~~~~~~~~--~-~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g 688 (953)
...|++++|...|++... | + ...|..+...|...|++++|+..|+++.+ ..|+. ..+...|
T Consensus 49 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~-------~~~~~~~ 119 (258)
T 3uq3_A 49 YEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT--EHRTA-------DILTKLR 119 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCH-------HHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHh--cCchh-------HHHHHHh
Confidence 777888888877777652 1 1 57888899999999999999999999998 45664 3456678
Q ss_pred CHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHH
Q 037236 689 LVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVA 765 (953)
Q Consensus 689 ~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~ 765 (953)
++++|...++.+.+ ..|+ ...+..+...+.+.|++++|.+.++++.. +.++.+|..+...+...|+++.|...+
T Consensus 120 ~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 196 (258)
T 3uq3_A 120 NAEKELKKAEAEAY---VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADC 196 (258)
T ss_dssp HHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 89999999998876 4555 67788899999999999999999988753 456788999999999999999999999
Q ss_pred HHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 766 KTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 766 ~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
+++++++|+++.++..++.+|...|++++|...++...+
T Consensus 197 ~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 197 NKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998877755
No 37
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.56 E-value=3.2e-15 Score=172.77 Aligned_cols=127 Identities=15% Similarity=0.113 Sum_probs=113.1
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHhhhcC-------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 037236 607 DAFVACSIIDMYAKCGCLEQSRRVFDRLK-------DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVG 679 (953)
Q Consensus 607 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ 679 (953)
-..+||+||++|+++|++++|.++|++|. .||++|||+||.||++.|+.++|.++|++|.+.|+.||.+||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 45689999999999999999999997753 68999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHH
Q 037236 680 ILMACNHAGL-VENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLII 734 (953)
Q Consensus 680 ll~a~~~~g~-~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~ 734 (953)
+|.++++.|+ .++|.++|++|. ..|+.||..+|++++....|.+-++...++..
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~-~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P 260 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMS-QEGLKLQALFTAVLLSEEDRATVLKAVHKVKP 260 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHH-HHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHH-HcCCCCChhhcccccChhhHHHHHHHHHHhCc
Confidence 9999999998 478999999995 57999999999999988888766665555533
No 38
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.55 E-value=1.2e-15 Score=176.40 Aligned_cols=151 Identities=14% Similarity=0.088 Sum_probs=126.9
Q ss_pred CCCChhHHHHHHHHhhccCChHHHHHHhccCC-------CCCeecHHHHHHHHHcCCCchHHHHHHHHhhhccCCCCCCh
Q 037236 196 LIGDVFVSNALIAMYGKCAFVEEMVKLFEVMP-------ERNLVSWNSIICGSSENGFSCESFDLLIKMMGCEEGFIPDV 268 (953)
Q Consensus 196 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~-------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p~~ 268 (953)
...-..+||+||++||++|++++|.++|++|. .||++|||+||.||++.|++++|.++|++| ...|+.||.
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM--~~~G~~PDv 200 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMV--KDAGLTPDL 200 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHH--HHTTCCCCH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHH--HHcCCCCcH
Confidence 33446789999999999999999999997764 589999999999999999999999999999 899999999
Q ss_pred hhHHHHHHhhhcCCCc-hHHHHHHHHHHHhCCCCCchHHHHHHHhhHhcCChhHHHHHHhcCCC-----CCcccHHHHHH
Q 037236 269 ATVVTVLPVCAGEGNV-DLGILVHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFDKNNN-----KNVVSWNTIIG 342 (953)
Q Consensus 269 ~t~~~ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~-----~d~~~~~~li~ 342 (953)
.||+++|.++++.|.. +.|.+++++|.+.|+.||..+|++++..+.+.+-++..++++..+.. +.+.+.+.|..
T Consensus 201 vTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 201 LSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHH
Confidence 9999999999999985 78999999999999999999999999888887766666666554432 12344455556
Q ss_pred HHHcCC
Q 037236 343 AFSMAG 348 (953)
Q Consensus 343 ~~~~~g 348 (953)
-|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 666555
No 39
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.51 E-value=6.8e-13 Score=138.91 Aligned_cols=244 Identities=12% Similarity=-0.001 Sum_probs=154.8
Q ss_pred hHhhHHHHHHhcCChhHHHHHHHhccc---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhcc
Q 037236 509 TGISLLSLYMHCEKSSSARVLFDEMED---KSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQ 585 (953)
Q Consensus 509 ~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 585 (953)
........|.+.|++++|...|++..+ .+...|..+...|.+.|++++|++.|++..+....|+.
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~------------ 72 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKA------------ 72 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTC------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhH------------
Confidence 344556667777777777777777653 23446777777777777777777777777763211111
Q ss_pred ccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHH
Q 037236 586 LSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELF 662 (953)
Q Consensus 586 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~ 662 (953)
....+..+...|.+.|++++|...|++.. +.+...|..+...|...|++++|++.|
T Consensus 73 ---------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 131 (272)
T 3u4t_A 73 ---------------------KSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYM 131 (272)
T ss_dssp ---------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ---------------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHH
Confidence 12235556666666677777777666654 335566777777777777777777777
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCC---HHHHHHHHHhCC
Q 037236 663 EKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGK---LDDAFKLIIEMP 737 (953)
Q Consensus 663 ~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~---~~eA~~~~~~~~ 737 (953)
++.++. .| +...+..+...+...+++++|...|+.+.+ +.|+ ...+..+..++...|+ +++|...+++..
T Consensus 132 ~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~---~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 132 EKQIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLE---LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp GGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred HHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 776663 45 444555555244444577777777777765 3344 4555666666666665 555555555442
Q ss_pred C----CCC------hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 037236 738 E----EAD------AGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSE 790 (953)
Q Consensus 738 ~----~~~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g 790 (953)
. .|+ ..+|..+...+...|+++.|...++++++++|+++.+...+..+....+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 207 EVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 2 133 2467778888899999999999999999999999988877776655444
No 40
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.50 E-value=8.2e-13 Score=144.17 Aligned_cols=223 Identities=12% Similarity=0.088 Sum_probs=190.9
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHH
Q 037236 538 LVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDM 617 (953)
Q Consensus 538 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 617 (953)
...|+.+...+.+.|++++|++.|++.++. .|+ +...|+.+...
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~----------------------------------~~~a~~~~g~~ 140 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAA----------------------------------NYTVWHFRRVL 140 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTT----------------------------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh--Ccc----------------------------------CHHHHHHHHHH
Confidence 346777888889999999999999998875 454 56677788888
Q ss_pred HHhcCC-HHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHH
Q 037236 618 YAKCGC-LEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVEN 692 (953)
Q Consensus 618 y~~~g~-~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~ 692 (953)
|.+.|+ +++|...|+++. +.+...|+.+...+...|++++|+..|+++++ +.| +...|..+..++...|++++
T Consensus 141 l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~--ldP~~~~a~~~lg~~~~~~g~~~e 218 (382)
T 2h6f_A 141 LKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDN 218 (382)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTT
T ss_pred HHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcCChHH
Confidence 889996 999999999876 55788999999999999999999999999999 578 77889999999999999999
Q ss_pred HHHHHHHHHHhcCCCCC-hhHHHHHHHHHhh-cCCHHHH-----HHHHHhCCC--CCChhHHHHHHHHHHhcC--ChhHH
Q 037236 693 GLKYFSQMQKLHAVKPK-LEHYACVVDMLGR-AGKLDDA-----FKLIIEMPE--EADAGIWSSLLRSCRTYG--ALKMG 761 (953)
Q Consensus 693 a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~-~g~~~eA-----~~~~~~~~~--~~~~~~~~~ll~~~~~~g--~~~~a 761 (953)
|+..|+++++ +.|+ ...|..+..+|.+ .|..++| ++.+++... +.+...|..+...+...| +++.|
T Consensus 219 Al~~~~~al~---l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a 295 (382)
T 2h6f_A 219 ELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNL 295 (382)
T ss_dssp HHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHH
T ss_pred HHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHH
Confidence 9999999987 5666 7889999999999 6666887 477766543 346789999999998888 68999
Q ss_pred HHHHHHHhccCCCCcchHHHHHHHHHhcC---------CchHHHHHHHHH
Q 037236 762 EKVAKTLLELEPDKAENYVLVSNIYAGSE---------KWDDVRMMRQRM 802 (953)
Q Consensus 762 ~~~~~~~~~l~p~~~~~~~~l~~~y~~~g---------~~~~a~~~~~~m 802 (953)
...++++ +.+|+++.++..|+++|...| ..++|.++++.+
T Consensus 296 ~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 296 LNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp HHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 9999998 999999999999999999985 258899988887
No 41
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.49 E-value=5.6e-13 Score=145.50 Aligned_cols=242 Identities=11% Similarity=0.091 Sum_probs=203.1
Q ss_pred hhhHhhHHHHHHhcCChhHHHHHHHhccc---CCcccHHHHHHHHHhcCC-hhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 037236 507 SFTGISLLSLYMHCEKSSSARVLFDEMED---KSLVSWNTMIAGYSQNKL-PVEAIVLFRRMFSIGVQPCEISIVSILSA 582 (953)
Q Consensus 507 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 582 (953)
..++..+...|.+.|++++|.+.|+++.. .+...|+.+...+.+.|+ +++|+..|++..+. .|+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l--~P~---------- 164 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPK---------- 164 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTT----------
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--CCC----------
Confidence 44567777888899999999999998764 356789999999999997 99999999999875 454
Q ss_pred hccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHH
Q 037236 583 CSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAI 659 (953)
Q Consensus 583 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~ 659 (953)
+...|..+..+|.+.|++++|...|+++. ..+...|..+..++...|++++|+
T Consensus 165 ------------------------~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl 220 (382)
T 2h6f_A 165 ------------------------NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNEL 220 (382)
T ss_dssp ------------------------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred ------------------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHH
Confidence 56677778888888899999999999876 568889999999999999999999
Q ss_pred HHHHHHHHCCCCC-CHHHHHHHHHHHHh-cCCHHHH-----HHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcC--CHHHH
Q 037236 660 ELFEKMLALGHKP-DTFTFVGILMACNH-AGLVENG-----LKYFSQMQKLHAVKPK-LEHYACVVDMLGRAG--KLDDA 729 (953)
Q Consensus 660 ~l~~~m~~~g~~P-~~~t~~~ll~a~~~-~g~~~~a-----~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g--~~~eA 729 (953)
..|+++++ +.| +...|..+..++.. .|..++| +..|+++++ +.|+ ...|..+..+|.+.| ++++|
T Consensus 221 ~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a 295 (382)
T 2h6f_A 221 QYVDQLLK--EDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNL 295 (382)
T ss_dssp HHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHH
T ss_pred HHHHHHHH--hCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHH
Confidence 99999999 577 67889999999998 6665777 588888876 5677 778899999999988 69999
Q ss_pred HHHHHhCCCCC-ChhHHHHHHHHHHhcC--------C-hhHHHHHHHHH-hccCCCCcchHHHHHHHHHhc
Q 037236 730 FKLIIEMPEEA-DAGIWSSLLRSCRTYG--------A-LKMGEKVAKTL-LELEPDKAENYVLVSNIYAGS 789 (953)
Q Consensus 730 ~~~~~~~~~~~-~~~~~~~ll~~~~~~g--------~-~~~a~~~~~~~-~~l~p~~~~~~~~l~~~y~~~ 789 (953)
+++++++...| +..++..++..+...| + ++.|..+++++ .+++|.....|..++..+..+
T Consensus 296 ~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 296 LNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 99998884344 5678888988888764 2 58999999999 999999999999888877654
No 42
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.49 E-value=7.9e-13 Score=138.59 Aligned_cols=238 Identities=9% Similarity=-0.085 Sum_probs=181.8
Q ss_pred HhcCChhHHHHHHHhcccC-------CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchH
Q 037236 518 MHCEKSSSARVLFDEMEDK-------SLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALR 590 (953)
Q Consensus 518 ~~~g~~~~A~~~f~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 590 (953)
...|++++|...|+++.+. +...|..+...|...|++++|+..|++..+. .|+
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~------------------ 75 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--RPD------------------ 75 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCC------------------
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--CCC------------------
Confidence 3456677777777766542 2345666666777777777777777766654 222
Q ss_pred HHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 037236 591 LGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLA 667 (953)
Q Consensus 591 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 667 (953)
+...+..++..|...|++++|...|+++. +.+...|..+...|...|++++|+..|+++.+
T Consensus 76 ----------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 139 (275)
T 1xnf_A 76 ----------------MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ 139 (275)
T ss_dssp ----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 56677788889999999999999999876 45688999999999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCC-C-----C
Q 037236 668 LGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPEE-A-----D 741 (953)
Q Consensus 668 ~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~-~-----~ 741 (953)
..|+.......+..+...|++++|...++...... .++...+ .++..+...++.++|.+.+++.... | +
T Consensus 140 --~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 214 (275)
T 1xnf_A 140 --DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS--DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHL 214 (275)
T ss_dssp --HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS--CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHH
T ss_pred --hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccc
Confidence 56766655556666778899999999998887643 2333444 4777888889999999999887642 2 2
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHH
Q 037236 742 AGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMR 799 (953)
Q Consensus 742 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 799 (953)
..+|..+...+...|+++.|...++++++++|++...+ +.++...|++++|.+..
T Consensus 215 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 215 SETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH---HHHHHHHHHHHHC----
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHH---HHHHHHHHHHHhhHHHH
Confidence 57899999999999999999999999999999886544 67888889988887654
No 43
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.48 E-value=4.9e-12 Score=142.67 Aligned_cols=350 Identities=8% Similarity=0.011 Sum_probs=210.8
Q ss_pred cchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCc---ccHHHHhccCCCCChhhHHHHHHHHHhcC-----ChHHH
Q 037236 385 SELLSLKELHGYSLRHGFDNDELVANAFVVAYAKCGSE---ISAENVFHGMDSRTVSSWNALICGYAQNG-----DHLKA 456 (953)
Q Consensus 385 ~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~---~~A~~~f~~~~~~~~~~~~~li~~~~~~g-----~~~~A 456 (953)
|+++.|.+++....+.| +...+..|..+|...|+. ++|...|++..+.++..+..+...+...| ++++|
T Consensus 17 g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~~A 93 (452)
T 3e4b_A 17 GDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHEA 93 (452)
T ss_dssp HHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--CCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHHHH
Confidence 33444444444443333 233334455556666766 88888888876667777777777666655 67899
Q ss_pred HHHHHHhhhCCCCCCcchHHHHHHhhccccccchhhHHHHHHHHhCCCCchhhHhhHHHHHHhcCCh----hHHHHHHHh
Q 037236 457 LDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKS----SSARVLFDE 532 (953)
Q Consensus 457 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~----~~A~~~f~~ 532 (953)
+..|++..+.|.. ..+..+...+...+..+.+...+..+.+.....+......|..+|...+.+ +.+..++..
T Consensus 94 ~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~ 170 (452)
T 3e4b_A 94 ESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKA 170 (452)
T ss_dssp HHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHH
Confidence 9999999886632 255556666655555444444444443332222455666777777777744 445555666
Q ss_pred cccCCcccHHHHHHHHHhcC---ChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCcc
Q 037236 533 MEDKSLVSWNTMIAGYSQNK---LPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAF 609 (953)
Q Consensus 533 ~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~ 609 (953)
....++.++..|...|.+.| +.++|++.|++..+.|. + +..
T Consensus 171 a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~-----------------------------------~a~ 214 (452)
T 3e4b_A 171 ALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-V-----------------------------------TAQ 214 (452)
T ss_dssp HTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-S-----------------------------------CHH
T ss_pred HHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-H-----------------------------------HHH
Confidence 66666667888888888888 77888888887777652 2 222
Q ss_pred HHHHHHHHHHhc----CCHHHHHHHhhhcCCCCHHHHHHHHHH-H--HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037236 610 VACSIIDMYAKC----GCLEQSRRVFDRLKDKDVTSWNAIIGG-H--GIHGYGKEAIELFEKMLALGHKPDTFTFVGILM 682 (953)
Q Consensus 610 ~~~~li~~y~~~----g~~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~ 682 (953)
.+..|..+|... ++.++|...|++..+.++..+..+... | ...|+.++|++.|++..+.| +...+..|..
T Consensus 215 ~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~ 291 (452)
T 3e4b_A 215 RVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGK 291 (452)
T ss_dssp HHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 223445555433 678888888887764466677777776 4 45788999999999888865 5666777777
Q ss_pred HHHhcC-----CHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCChhHHHHHHHHHH
Q 037236 683 ACNHAG-----LVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGR----AGKLDDAFKLIIEMPEEADAGIWSSLLRSCR 753 (953)
Q Consensus 683 a~~~~g-----~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~----~g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~ 753 (953)
.|. .| ++++|..+|++.. .-++..+..|..+|.. ..++++|.+++++.....++.....|...|.
T Consensus 292 ~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~ 365 (452)
T 3e4b_A 292 LYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFS 365 (452)
T ss_dssp HHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHH
T ss_pred HHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHH
Confidence 776 45 8899999888763 2346677777777766 3488999999988766666667777776665
Q ss_pred h----cCChhHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 037236 754 T----YGALKMGEKVAKTLLELEPDKAENYVLVSNIYA 787 (953)
Q Consensus 754 ~----~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 787 (953)
. .+|.+.|...++++.+..+ +.+...+..+..
T Consensus 366 ~G~g~~~d~~~A~~~~~~A~~~g~--~~a~~~l~~l~~ 401 (452)
T 3e4b_A 366 QGKGTKPDPLNAYVFSQLAKAQDT--PEANDLATQLEA 401 (452)
T ss_dssp SCTTBCCCHHHHHHHHHHHHTTCC--HHHHHHHHHHHT
T ss_pred hCCCCCCCHHHHHHHHHHHHHCCC--HHHHHHHHHHHH
Confidence 3 4588899999988887664 344455555543
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.47 E-value=2e-12 Score=133.57 Aligned_cols=195 Identities=10% Similarity=-0.037 Sum_probs=166.2
Q ss_pred ccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 037236 608 AFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMA 683 (953)
Q Consensus 608 ~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a 683 (953)
...+..+...|...|++++|...|+++. +.+...|..+...|...|++++|++.|+++.+. .| +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS--DSRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHH
Confidence 4566777888889999999999988775 456788888999999999999999999999884 45 66778888899
Q ss_pred HHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhH
Q 037236 684 CNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKM 760 (953)
Q Consensus 684 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~ 760 (953)
+...|++++|.++|+++.+ .+..|+ ...+..+..+|.+.|++++|.+.++++.. +.+..+|..+...+...|+++.
T Consensus 115 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999998865 335565 67788888999999999999999987653 3457888899999999999999
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHC
Q 037236 761 GEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKER 805 (953)
Q Consensus 761 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 805 (953)
|...++++++..|+++..+..++.+|...|++++|.+.++.+.+.
T Consensus 194 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988888764
No 45
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.47 E-value=3.1e-12 Score=129.25 Aligned_cols=196 Identities=12% Similarity=0.029 Sum_probs=168.7
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 037236 607 DAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILM 682 (953)
Q Consensus 607 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~ 682 (953)
+...+..++..|...|++++|...|+++. +.+...|..+...|...|++++|++.|+++.+. .| +..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI--KPDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCChHHHHHHHH
Confidence 45667778889999999999999998765 456788999999999999999999999999884 45 6778888999
Q ss_pred HHHhc-CCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCCh
Q 037236 683 ACNHA-GLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGAL 758 (953)
Q Consensus 683 a~~~~-g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~ 758 (953)
.+... |++++|..+++.+.+ .+..|+ ...+..+...+.+.|++++|++.++++.. +.+...|..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 99999 999999999999976 444455 67788899999999999999999987653 34578899999999999999
Q ss_pred hHHHHHHHHHhccCC-CCcchHHHHHHHHHhcCCchHHHHHHHHHHHC
Q 037236 759 KMGEKVAKTLLELEP-DKAENYVLVSNIYAGSEKWDDVRMMRQRMKER 805 (953)
Q Consensus 759 ~~a~~~~~~~~~l~p-~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 805 (953)
+.|...++++++..| +++..+..++.++...|+.++|..+.+.+.+.
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 999999999999999 99999999999999999999999998888653
No 46
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.46 E-value=7.6e-13 Score=135.80 Aligned_cols=211 Identities=14% Similarity=0.079 Sum_probs=137.1
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHH
Q 037236 538 LVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDM 617 (953)
Q Consensus 538 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 617 (953)
...|..+...+.+.|++++|+..|+++.+. .|+ +...+..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~~~----------------------------------~~~~~~~la~~ 66 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--NKE----------------------------------DAIPYINFANL 66 (243)
T ss_dssp -------------------CCTTHHHHHTT--CTT----------------------------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--Ccc----------------------------------cHHHHHHHHHH
Confidence 345666666777777777777777777653 232 34455556666
Q ss_pred HHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 037236 618 YAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENG 693 (953)
Q Consensus 618 y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a 693 (953)
|.+.|++++|...|+++. +.+...|..+...|...|++++|++.|+++.+. .| +...+..+...+...|++++|
T Consensus 67 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A 144 (243)
T 2q7f_A 67 LSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLA 144 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHH
Confidence 777777777777777654 346677777888888888888888888888774 34 566777777888888888888
Q ss_pred HHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 037236 694 LKYFSQMQKLHAVKP-KLEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLE 770 (953)
Q Consensus 694 ~~~~~~m~~~~~~~p-~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 770 (953)
..+++++.+. .| +...+..+..++.+.|++++|++.++++.. +.+..+|..+...+...|+++.|...++++++
T Consensus 145 ~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 145 LPYLQRAVEL---NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHh---CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 8888887663 33 366777778888888888888888876643 34567788888888888888888888888888
Q ss_pred cCCCCcchHHHHHHHHHhc
Q 037236 771 LEPDKAENYVLVSNIYAGS 789 (953)
Q Consensus 771 l~p~~~~~~~~l~~~y~~~ 789 (953)
++|+++.++..++.+....
T Consensus 222 ~~p~~~~~~~~~~~l~~~~ 240 (243)
T 2q7f_A 222 IQPDHMLALHAKKLLGHHH 240 (243)
T ss_dssp HCTTCHHHHHHHTC-----
T ss_pred cCcchHHHHHHHHHHHhhc
Confidence 8888888777766655443
No 47
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.46 E-value=4.8e-12 Score=130.72 Aligned_cols=205 Identities=13% Similarity=0.069 Sum_probs=170.4
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHH
Q 037236 538 LVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDM 617 (953)
Q Consensus 538 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 617 (953)
...|..+...|...|++++|++.|+++.+.. |+ +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~----------------------------------~~~~~~~la~~ 80 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID--PS----------------------------------SADAHAALAVV 80 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--TT----------------------------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CC----------------------------------hHHHHHHHHHH
Confidence 4567788888999999999999999987752 32 44566777788
Q ss_pred HHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 037236 618 YAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENG 693 (953)
Q Consensus 618 y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a 693 (953)
|.+.|++++|.+.|+++. +.+...|..+...|...|++++|++.|+++.+.+..| +...+..+..++...|++++|
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 81 FQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHH
Confidence 888899999999888765 4577888999999999999999999999998844556 556788888999999999999
Q ss_pred HHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 037236 694 LKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLE 770 (953)
Q Consensus 694 ~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 770 (953)
..+|+++.+. .|+ ...+..++.+|.+.|++++|.+.++++.. +.+...|..+...+...|+.+.|...++++++
T Consensus 161 ~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 161 KEYFEKSLRL---NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 9999998763 344 77888999999999999999999988753 35677888888889999999999999999999
Q ss_pred cCCCCcchHHH
Q 037236 771 LEPDKAENYVL 781 (953)
Q Consensus 771 l~p~~~~~~~~ 781 (953)
+.|+++.....
T Consensus 238 ~~p~~~~~~~~ 248 (252)
T 2ho1_A 238 LYPGSLEYQEF 248 (252)
T ss_dssp HCTTSHHHHHH
T ss_pred HCCCCHHHHHH
Confidence 99998876543
No 48
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.46 E-value=1.6e-12 Score=134.65 Aligned_cols=235 Identities=11% Similarity=-0.026 Sum_probs=182.4
Q ss_pred hhHhhHHHHHHhcCChhHHHHHHHhccc--CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCChhhHHHHHHHh
Q 037236 508 FTGISLLSLYMHCEKSSSARVLFDEMED--KSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGV--QPCEISIVSILSAC 583 (953)
Q Consensus 508 ~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~a~ 583 (953)
..+..+...|...|++++|...|++..+ .+...|..+...|...|++++|++.|++..+... .|+..
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~--------- 76 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK--------- 76 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH---------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH---------
Confidence 4566777888899999999999887643 5667888899999999999999999999876421 11100
Q ss_pred ccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC--CCCHHHHHHHHHHHHhcCChHHHHHH
Q 037236 584 SQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK--DKDVTSWNAIIGGHGIHGYGKEAIEL 661 (953)
Q Consensus 584 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l 661 (953)
....++..+...|.+.|++++|...|++.. .|+. ..+...|++++|+..
T Consensus 77 ----------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~~~ 127 (258)
T 3uq3_A 77 ----------------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKELKK 127 (258)
T ss_dssp ----------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHH
T ss_pred ----------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHHHH
Confidence 013556677778888888888888888766 3442 345666788999999
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-
Q 037236 662 FEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE- 738 (953)
Q Consensus 662 ~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~- 738 (953)
++++.. ..| +...+..+...+...|++++|...|+.+.+. .|+ ...+..+..+|.+.|++++|++.+++...
T Consensus 128 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 128 AEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999888 466 5567888888889999999999999988763 343 67788889999999999999999887653
Q ss_pred -CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccC------CCCcchHHHHHHH
Q 037236 739 -EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELE------PDKAENYVLVSNI 785 (953)
Q Consensus 739 -~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~------p~~~~~~~~l~~~ 785 (953)
+.++.+|..+...+...|+++.|...++++++++ |++...+..+..+
T Consensus 203 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 203 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 3457789999999999999999999999999998 8777766666543
No 49
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.46 E-value=4.4e-12 Score=128.13 Aligned_cols=208 Identities=13% Similarity=0.052 Sum_probs=165.6
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHH
Q 037236 537 SLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIID 616 (953)
Q Consensus 537 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 616 (953)
+...|..+...+...|++++|++.|+++.+. .|+ +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~----------------------------------~~~~~~~l~~ 50 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKS--DPK----------------------------------NELAWLVRAE 50 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT----------------------------------CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--Ccc----------------------------------chHHHHHHHH
Confidence 3446677777788888888888888877764 232 3445666777
Q ss_pred HHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHH
Q 037236 617 MYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIH-GYGKEAIELFEKMLALGHKPD-TFTFVGILMACNHAGLVE 691 (953)
Q Consensus 617 ~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~P~-~~t~~~ll~a~~~~g~~~ 691 (953)
.|...|++++|...|+++. +.+...|..+...|... |++++|+..|+++.+.+..|+ ...+..+..++...|+++
T Consensus 51 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 130 (225)
T 2vq2_A 51 IYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFG 130 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHH
Confidence 7888888888888888765 44677888899999999 999999999999988444453 567888889999999999
Q ss_pred HHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--C-CChhHHHHHHHHHHhcCChhHHHHHHHH
Q 037236 692 NGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--E-ADAGIWSSLLRSCRTYGALKMGEKVAKT 767 (953)
Q Consensus 692 ~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 767 (953)
+|..+|+.+.+. .|+ ...+..+..++.+.|++++|.+.++++.. + .+...|..+...+...|+.+.+...++.
T Consensus 131 ~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 207 (225)
T 2vq2_A 131 LAEAYLKRSLAA---QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQ 207 (225)
T ss_dssp HHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHh---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 999999998763 454 77888899999999999999999987653 3 5667777777778899999999999999
Q ss_pred HhccCCCCcchHHHHH
Q 037236 768 LLELEPDKAENYVLVS 783 (953)
Q Consensus 768 ~~~l~p~~~~~~~~l~ 783 (953)
+.+..|+++.....+.
T Consensus 208 ~~~~~p~~~~~~~~l~ 223 (225)
T 2vq2_A 208 LQANFPYSEELQTVLT 223 (225)
T ss_dssp HHHHCTTCHHHHHHHC
T ss_pred HHHhCCCCHHHHHHhc
Confidence 9999999988766553
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.45 E-value=1.2e-12 Score=134.26 Aligned_cols=194 Identities=12% Similarity=0.117 Sum_probs=155.9
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 037236 607 DAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILM 682 (953)
Q Consensus 607 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~ 682 (953)
....+..+...+.+.|++++|...|+++. +.+...|..+...|...|++++|++.|+++.+. .| +..++..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALEL--DSSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCcchHHHHHHHH
Confidence 56677778889999999999999999875 457889999999999999999999999999984 55 6788889999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhH
Q 037236 683 ACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKM 760 (953)
Q Consensus 683 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~ 760 (953)
.+...|++++|..+++++.+.. ..+...+..+...+.+.|++++|.+.++++.. +.+..+|..+...+...|+++.
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999997743 22467888999999999999999999988753 4568899999999999999999
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 761 GEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 761 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
|...++++++..|+++..+..++.+|...|++++|...++++.+
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999888766
No 51
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.44 E-value=2.8e-11 Score=126.66 Aligned_cols=223 Identities=9% Similarity=-0.021 Sum_probs=149.3
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHH
Q 037236 537 SLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIID 616 (953)
Q Consensus 537 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 616 (953)
+..++..+...|...|++++|++.|++..+.+ +...+..+..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~--------------------------------------~~~a~~~lg~ 46 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK--------------------------------------ENSGCFNLGV 46 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--------------------------------------CHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC--------------------------------------CHHHHHHHHH
Confidence 34456666666777777777777777766521 2233444555
Q ss_pred HHHh----cCCHHHHHHHhhhcC-CCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-
Q 037236 617 MYAK----CGCLEQSRRVFDRLK-DKDVTSWNAIIGGHGI----HGYGKEAIELFEKMLALGHKPDTFTFVGILMACNH- 686 (953)
Q Consensus 617 ~y~~----~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~- 686 (953)
+|.. .|++++|...|++.. ..+...+..+...|.. .|++++|++.|++..+.+ +...+..+...+..
T Consensus 47 ~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~ 123 (273)
T 1ouv_A 47 LYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDG 123 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHC
T ss_pred HHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcC
Confidence 5555 666666666666554 2355666666666766 777777777777777653 55666667777776
Q ss_pred ---cCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCChhHHHHHHHHHHh----c
Q 037236 687 ---AGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGR----AGKLDDAFKLIIEMPEEADAGIWSSLLRSCRT----Y 755 (953)
Q Consensus 687 ---~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~----~g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~~----~ 755 (953)
.+++++|..+|++..+. + +...+..+..+|.+ .+++++|++.+++.....++..+..+...+.. .
T Consensus 124 ~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~ 199 (273)
T 1ouv_A 124 KVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGAT 199 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred CCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCC
Confidence 77777777777777542 1 34556666666766 77777777777766544556667777777777 7
Q ss_pred CChhHHHHHHHHHhccCCCCcchHHHHHHHHHh----cCCchHHHHHHHHHHHCC
Q 037236 756 GALKMGEKVAKTLLELEPDKAENYVLVSNIYAG----SEKWDDVRMMRQRMKERG 806 (953)
Q Consensus 756 g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~----~g~~~~a~~~~~~m~~~~ 806 (953)
++++.|...++++++.+| +.++..|+.+|.. .|++++|...+++..+.|
T Consensus 200 ~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 200 KNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 777777777777777765 6677777888877 778888887777666544
No 52
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.42 E-value=5e-12 Score=127.15 Aligned_cols=153 Identities=12% Similarity=0.085 Sum_probs=69.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhc-----------CChHHHHHHHHHHHHCCCCC-CH
Q 037236 610 VACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIH-----------GYGKEAIELFEKMLALGHKP-DT 674 (953)
Q Consensus 610 ~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~-----------g~~~~A~~l~~~m~~~g~~P-~~ 674 (953)
.+..+...|.+.|++++|...|++.. +.+...|..+...|... |++++|+..|++.++ ..| +.
T Consensus 41 a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~P~~~ 118 (217)
T 2pl2_A 41 ALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAER--VNPRYA 118 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH--hCcccH
Confidence 33344444444444444444444432 22334444444444444 555555555555555 344 34
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHH
Q 037236 675 FTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSC 752 (953)
Q Consensus 675 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~ 752 (953)
..+..+..++...|++++|+..|+++++.. .+...+..+..+|...|++++|++.+++... +.++.++..+...+
T Consensus 119 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~ 195 (217)
T 2pl2_A 119 PLHLQRGLVYALLGERDKAEASLKQALALE---DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASAL 195 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcc---cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 445555555555555555555555554422 3345555555555555555555555554432 22344555555555
Q ss_pred HhcCChhHHHHHHHH
Q 037236 753 RTYGALKMGEKVAKT 767 (953)
Q Consensus 753 ~~~g~~~~a~~~~~~ 767 (953)
...|+++.|...+++
T Consensus 196 ~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 196 LLKGKAEEAARAAAL 210 (217)
T ss_dssp TC-------------
T ss_pred HHccCHHHHHHHHHH
Confidence 555555555555544
No 53
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.41 E-value=7.8e-12 Score=122.10 Aligned_cols=162 Identities=14% Similarity=0.139 Sum_probs=131.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHH
Q 037236 638 DVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYAC 715 (953)
Q Consensus 638 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ 715 (953)
++..|..+...|...|++++|++.|++.++ +.| +..++..+..++...|++++|...++.... ..|+ ...+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~ 78 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK--ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV---LDTTSAEAYYI 78 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCchhHHHHHH
Confidence 566778888888888888888888888887 467 567788888888888888888888888765 3344 566777
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCch
Q 037236 716 VVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWD 793 (953)
Q Consensus 716 lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~ 793 (953)
+...+...+++++|.+.+++... +.+..+|..+...+...|++++|...++++++++|+++.++..++.+|...|+++
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 77788888888888888876543 3457788888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 037236 794 DVRMMRQRMKE 804 (953)
Q Consensus 794 ~a~~~~~~m~~ 804 (953)
+|...+++.-+
T Consensus 159 ~A~~~~~~al~ 169 (184)
T 3vtx_A 159 EAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99998776654
No 54
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.41 E-value=3.1e-11 Score=126.38 Aligned_cols=227 Identities=13% Similarity=0.008 Sum_probs=183.6
Q ss_pred chhhHhhHHHHHHhcCChhHHHHHHHhcccC-CcccHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCChhhHHHHH
Q 037236 506 DSFTGISLLSLYMHCEKSSSARVLFDEMEDK-SLVSWNTMIAGYSQ----NKLPVEAIVLFRRMFSIGVQPCEISIVSIL 580 (953)
Q Consensus 506 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 580 (953)
+...+..+...|...|++++|...|++..++ +..++..+...|.. .+++++|++.|++..+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------------ 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN------------ 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC------------
Confidence 4456667778888999999999999987765 45678888888998 999999999999887654
Q ss_pred HHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHh----cCCHHHHHHHhhhcC-CCCHHHHHHHHHHHHh----
Q 037236 581 SACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAK----CGCLEQSRRVFDRLK-DKDVTSWNAIIGGHGI---- 651 (953)
Q Consensus 581 ~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~---- 651 (953)
+...+..+..+|.. .|++++|...|++.. ..+...+..+...|..
T Consensus 73 --------------------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~ 126 (273)
T 1ouv_A 73 --------------------------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVV 126 (273)
T ss_dssp --------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSS
T ss_pred --------------------------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCc
Confidence 33445556667777 888888888888765 3467788888888888
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhh----c
Q 037236 652 HGYGKEAIELFEKMLALGHKPDTFTFVGILMACNH----AGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGR----A 723 (953)
Q Consensus 652 ~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~----~ 723 (953)
.|++++|++.|++..+.+ +...+..+...+.. .+++++|..+|++..+. .+...+..+..+|.+ .
T Consensus 127 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~ 199 (273)
T 1ouv_A 127 TRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGAT 199 (273)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSC
T ss_pred ccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCC
Confidence 899999999999998865 56677778888887 89999999999988763 245777888889988 9
Q ss_pred CCHHHHHHHHHhCCCCCChhHHHHHHHHHHh----cCChhHHHHHHHHHhccCCCCcc
Q 037236 724 GKLDDAFKLIIEMPEEADAGIWSSLLRSCRT----YGALKMGEKVAKTLLELEPDKAE 777 (953)
Q Consensus 724 g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~l~p~~~~ 777 (953)
|++++|++.+++.....++..+..+...+.. .++.++|...+++++++.|+++.
T Consensus 200 ~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~ 257 (273)
T 1ouv_A 200 KNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGAC 257 (273)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHH
T ss_pred ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999887655557788888888888 89999999999999999986543
No 55
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.41 E-value=5.2e-11 Score=134.25 Aligned_cols=344 Identities=11% Similarity=0.004 Sum_probs=225.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhcccccc---chhhHHHHHHHHhCCCCchhhHhhHHHHHH
Q 037236 442 ALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSL---HRGKEIHGFVIRNGLEGDSFTGISLLSLYM 518 (953)
Q Consensus 442 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~~a~~i~~~~~~~g~~~~~~~~~~li~~y~ 518 (953)
.+...+.+.|++++|++.|++..+.|- ...+..+-..+...|+. ++|...+....+. ++..+..|..++.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 356777889999999999999988763 33344444455556666 8888888888755 4455566666455
Q ss_pred hcC-----ChhHHHHHHHhcccC-CcccHHHHHHHHHhcCChh---HHHHHHHHHHHcCCCCChhhHHHHHHHhccccch
Q 037236 519 HCE-----KSSSARVLFDEMEDK-SLVSWNTMIAGYSQNKLPV---EAIVLFRRMFSIGVQPCEISIVSILSACSQLSAL 589 (953)
Q Consensus 519 ~~g-----~~~~A~~~f~~~~~~-~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 589 (953)
..+ +.++|...|++..++ +...+..|...|...+..+ ++.+.+......|. ......+-..+...+.+
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCG
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCc
Confidence 544 678899998887654 5567888888888766544 45555555555443 33444444455555544
Q ss_pred HHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcC---CHHHHHHHhhhcC---CCCHHHHHHHHHHHHhc----CChHHHH
Q 037236 590 RLGKETHCYALKAILTNDAFVACSIIDMYAKCG---CLEQSRRVFDRLK---DKDVTSWNAIIGGHGIH----GYGKEAI 659 (953)
Q Consensus 590 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g---~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~----g~~~~A~ 659 (953)
+.+........+.-...++..+..|..+|.+.| +.++|...|++.. .++...+..+...|... +++++|+
T Consensus 158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 444443333333323335558888999999999 8889999998765 44555557777777554 6899999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcC-----CHHHHHH
Q 037236 660 ELFEKMLALGHKPDTFTFVGILMA-C--NHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAG-----KLDDAFK 731 (953)
Q Consensus 660 ~l~~~m~~~g~~P~~~t~~~ll~a-~--~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g-----~~~eA~~ 731 (953)
+.|++.. .| +...+..|... + ...+++++|..+|++..+ .| +...+..|..+|. .| ++++|.+
T Consensus 238 ~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~-~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 238 ALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA-AD---QPRAELLLGKLYY-EGKWVPADAKAAEA 308 (452)
T ss_dssp HHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred HHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence 9999886 32 45566666665 3 568899999999998864 22 5677777888777 55 9999999
Q ss_pred HHHhCCCCCChhHHHHHHHHHHh----cCChhHHHHHHHHHhccCCCCcchHHHHHHHHHh----cCCchHHHHHHHHHH
Q 037236 732 LIIEMPEEADAGIWSSLLRSCRT----YGALKMGEKVAKTLLELEPDKAENYVLVSNIYAG----SEKWDDVRMMRQRMK 803 (953)
Q Consensus 732 ~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~----~g~~~~a~~~~~~m~ 803 (953)
.|++.. +.++..+..|...|.. ..|.+.|...++++.+ +.++.+...|+.+|.. ..+.++|...+++..
T Consensus 309 ~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~ 385 (452)
T 3e4b_A 309 HFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAK 385 (452)
T ss_dssp HHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHH
T ss_pred HHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 999888 7677888888766655 3389999999999876 5678888999999985 558888988888877
Q ss_pred HCCC
Q 037236 804 ERGL 807 (953)
Q Consensus 804 ~~~~ 807 (953)
+.|.
T Consensus 386 ~~g~ 389 (452)
T 3e4b_A 386 AQDT 389 (452)
T ss_dssp TTCC
T ss_pred HCCC
Confidence 7654
No 56
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.40 E-value=2.4e-11 Score=127.05 Aligned_cols=242 Identities=9% Similarity=-0.065 Sum_probs=192.3
Q ss_pred chHHHHHHhhccccccchhhHHHHHHHHhCCCCchhhHhhHHHHHHhcCChhHHHHHHHhccc--CCcc----cHHHHHH
Q 037236 473 FSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMED--KSLV----SWNTMIA 546 (953)
Q Consensus 473 ~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~----~~~~li~ 546 (953)
..+......+...|+++.|...+..+++.... +...+..+...|...|++++|...|++..+ ++.. +|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 34556667788899999999999999987643 555788888999999999999999998765 2332 3888999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHH
Q 037236 547 GYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQ 626 (953)
Q Consensus 547 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 626 (953)
.|...|++++|++.|++..+. .|+ +..++..+...|.+.|++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~--~~~----------------------------------~~~~~~~l~~~~~~~~~~~~ 126 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDR--DTT----------------------------------RLDMYGQIGSYFYNKGNFPL 126 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STT----------------------------------CTHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHhc--Ccc----------------------------------cHHHHHHHHHHHHHccCHHH
Confidence 999999999999999999874 332 45677888999999999999
Q ss_pred HHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC---HHHHHHHHHH
Q 037236 627 SRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGL---VENGLKYFSQ 699 (953)
Q Consensus 627 A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~---~~~a~~~~~~ 699 (953)
|...|++.. +.+...|..+...+...+++++|++.|+++++ ..| +...+..+..++...|+ +++|...++.
T Consensus 127 A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 204 (272)
T 3u4t_A 127 AIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLE--LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEK 204 (272)
T ss_dssp HHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHH
T ss_pred HHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHH
Confidence 999999987 34677888888344445699999999999999 467 46778888888888888 8889999999
Q ss_pred HHHhcCCCCCh------hHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHH
Q 037236 700 MQKLHAVKPKL------EHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCR 753 (953)
Q Consensus 700 m~~~~~~~p~~------~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~ 753 (953)
+.+...-.|+. ..|..+...|.+.|++++|.+.+++... +.++..+..+.....
T Consensus 205 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 205 LIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLE 266 (272)
T ss_dssp HHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC----
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhc
Confidence 98765444552 5788899999999999999999998753 345666666554443
No 57
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.37 E-value=1.8e-12 Score=147.12 Aligned_cols=189 Identities=8% Similarity=-0.013 Sum_probs=168.4
Q ss_pred CccHHHHHHHHHHhcCCH-HHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037236 607 DAFVACSIIDMYAKCGCL-EQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILM 682 (953)
Q Consensus 607 ~~~~~~~li~~y~~~g~~-~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~ 682 (953)
+...+..+...|...|++ ++|...|++.. +.+...|..+...|...|++++|++.|++.++ ..|+...+..+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT--HCKNKVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCHHHHHHHHH
Confidence 667777888888889999 99999998775 44688999999999999999999999999998 5788888999999
Q ss_pred HHHhc---------CCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhc--------CCHHHHHHHHHhCCC-CC---
Q 037236 683 ACNHA---------GLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRA--------GKLDDAFKLIIEMPE-EA--- 740 (953)
Q Consensus 683 a~~~~---------g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~--------g~~~eA~~~~~~~~~-~~--- 740 (953)
++... |++++|+..|+++.+ +.|+ ...|..+..+|.+. |++++|++.+++... .|
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 255 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQ---MDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS 255 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcc
Confidence 99999 999999999999987 4565 78889999999998 999999999988754 44
Q ss_pred -ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHH
Q 037236 741 -DAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQ 800 (953)
Q Consensus 741 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 800 (953)
++..|..+...+...|++++|...++++++++|+++.++..++.++...|++++|.+...
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 788999999999999999999999999999999999999999999999999999987543
No 58
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.36 E-value=9.3e-12 Score=146.79 Aligned_cols=161 Identities=17% Similarity=0.239 Sum_probs=138.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHH
Q 037236 638 DVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYAC 715 (953)
Q Consensus 638 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ 715 (953)
+..+|+.+...|...|++++|++.|++.++ +.| +..++..+..++.+.|++++|+..|++.++ +.|+ ...|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHH
Confidence 456788888889999999999999999888 577 567788888999999999999999998876 5676 778888
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCC-C-CChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCch
Q 037236 716 VVDMLGRAGKLDDAFKLIIEMPE-E-ADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWD 793 (953)
Q Consensus 716 lv~~l~~~g~~~eA~~~~~~~~~-~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~ 793 (953)
+..+|.+.|++++|++.+++... . .+...|..+..++...|++++|+..++++++++|+++.++..|+.+|...|+|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 99999999999999998887653 3 457789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 037236 794 DVRMMRQRMK 803 (953)
Q Consensus 794 ~a~~~~~~m~ 803 (953)
+|.+.+++..
T Consensus 163 ~A~~~~~kal 172 (723)
T 4gyw_A 163 DYDERMKKLV 172 (723)
T ss_dssp THHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988766553
No 59
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.35 E-value=1.5e-11 Score=120.15 Aligned_cols=165 Identities=15% Similarity=0.086 Sum_probs=146.8
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 037236 607 DAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILM 682 (953)
Q Consensus 607 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~ 682 (953)
+..+|..|...|.+.|++++|...|++.. +.++.+|..+...|...|++++|+..+++.... .| +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHH
Confidence 66789999999999999999999999876 457889999999999999999999999999884 56 5677888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChh
Q 037236 683 ACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALK 759 (953)
Q Consensus 683 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~ 759 (953)
.+...++++++...+....+ +.|+ ...+..+..+|.+.|++++|++.+++... +.++.+|..++..+...|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIA---LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHH---hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 99999999999999999876 3455 77888999999999999999999988754 456789999999999999999
Q ss_pred HHHHHHHHHhccCCCCc
Q 037236 760 MGEKVAKTLLELEPDKA 776 (953)
Q Consensus 760 ~a~~~~~~~~~l~p~~~ 776 (953)
+|...++++++++|+++
T Consensus 159 ~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 159 EAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHhCCccCH
Confidence 99999999999999764
No 60
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.34 E-value=2.3e-11 Score=127.28 Aligned_cols=193 Identities=12% Similarity=0.030 Sum_probs=162.3
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 037236 607 DAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILM 682 (953)
Q Consensus 607 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~ 682 (953)
+...+..++..|...|++++|...|+++. +.+...|..+...|...|++++|++.|+++++. .| +..++..+..
T Consensus 42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~ 119 (275)
T 1xnf_A 42 RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGI 119 (275)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CccccHHHHHHHH
Confidence 45667788899999999999999999876 457889999999999999999999999999994 56 6788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhH
Q 037236 683 ACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKM 760 (953)
Q Consensus 683 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~ 760 (953)
.+...|++++|..+|+.+.+ +.|+......+...+.+.|++++|...+++... +++...|. ++..+...++.+.
T Consensus 120 ~~~~~g~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 195 (275)
T 1xnf_A 120 ALYYGGRDKLAQDDLLAFYQ---DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQT 195 (275)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHH
T ss_pred HHHHhccHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHhcCHHH
Confidence 99999999999999999977 456654555555666788999999999966542 34444454 7777788888999
Q ss_pred HHHHHHHHhccCCC----CcchHHHHHHHHHhcCCchHHHHHHHHHHHC
Q 037236 761 GEKVAKTLLELEPD----KAENYVLVSNIYAGSEKWDDVRMMRQRMKER 805 (953)
Q Consensus 761 a~~~~~~~~~l~p~----~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 805 (953)
|...++++++..|. ++..+..++.+|...|++++|...+++..+.
T Consensus 196 a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 196 LMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 99999999998774 3788999999999999999999998888653
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.34 E-value=7e-12 Score=139.68 Aligned_cols=296 Identities=13% Similarity=0.062 Sum_probs=196.9
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccchhhHHHHHHHHhCCCCchhhHhhHHH
Q 037236 436 TVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLS 515 (953)
Q Consensus 436 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~ 515 (953)
....+......+...|++++|+..|++..+.+ |+.... -..++..+..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~------------------------------~~~~~~~l~~ 55 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKT------------------------------LSAIYSQLGN 55 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHH------------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHH------------------------------HHHHHHHHHH
Confidence 33455566677777888888888887776642 221100 0123445556
Q ss_pred HHHhcCChhHHHHHHHhccc---------CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CChhhHHHHHHHhcc
Q 037236 516 LYMHCEKSSSARVLFDEMED---------KSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQ-PCEISIVSILSACSQ 585 (953)
Q Consensus 516 ~y~~~g~~~~A~~~f~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~ 585 (953)
.|...|++++|...|++... ....+|..+...|...|++++|+..|++..+.... ++...
T Consensus 56 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---------- 125 (406)
T 3sf4_A 56 AYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVG---------- 125 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH----------
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccc----------
Confidence 66677777777776665431 12346677777888888888888888877653110 11000
Q ss_pred ccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCC--------------------HHHHHHHhhhcC-------C--
Q 037236 586 LSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGC--------------------LEQSRRVFDRLK-------D-- 636 (953)
Q Consensus 586 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~--------------------~~~A~~~~~~~~-------~-- 636 (953)
...++..+...|...|+ +++|...|.+.. .
T Consensus 126 ---------------------~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~ 184 (406)
T 3sf4_A 126 ---------------------EARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRA 184 (406)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ---------------------hHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcH
Confidence 12234445555555666 666666655443 1
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC--
Q 037236 637 KDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGH-KPD----TFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-- 709 (953)
Q Consensus 637 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~P~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-- 709 (953)
....+|..+...|...|++++|+..|++..+... .++ ..++..+...+...|++++|..+++...+...-.++
T Consensus 185 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 264 (406)
T 3sf4_A 185 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA 264 (406)
T ss_dssp HHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCch
Confidence 1234677888888889999999999988876310 112 236778888889999999999999888653322222
Q ss_pred --hhHHHHHHHHHhhcCCHHHHHHHHHhCCC----CCC----hhHHHHHHHHHHhcCChhHHHHHHHHHhccC------C
Q 037236 710 --LEHYACVVDMLGRAGKLDDAFKLIIEMPE----EAD----AGIWSSLLRSCRTYGALKMGEKVAKTLLELE------P 773 (953)
Q Consensus 710 --~~~~~~lv~~l~~~g~~~eA~~~~~~~~~----~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~------p 773 (953)
...+..+...|.+.|++++|.+.+++... .++ ..++..+...+...|+++.|...+++++++. |
T Consensus 265 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 344 (406)
T 3sf4_A 265 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKS 344 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCc
Confidence 45677888899999999999988877642 122 5578888888999999999999999999873 3
Q ss_pred CCcchHHHHHHHHHhcCCchH
Q 037236 774 DKAENYVLVSNIYAGSEKWDD 794 (953)
Q Consensus 774 ~~~~~~~~l~~~y~~~g~~~~ 794 (953)
....++..++.+|...|+...
T Consensus 345 ~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 345 GELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTSC
T ss_pred chhHHHHHHHHHHHHhhHhHH
Confidence 346678889999998887643
No 62
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.33 E-value=7.3e-12 Score=139.95 Aligned_cols=264 Identities=9% Similarity=0.010 Sum_probs=184.3
Q ss_pred HhhHHHHHHhcCChhHHHHHHHhccc--C-Cc----ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 037236 510 GISLLSLYMHCEKSSSARVLFDEMED--K-SL----VSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSA 582 (953)
Q Consensus 510 ~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 582 (953)
+..+...+...|++++|...|++..+ + +. ..|..+...|...|++++|++.|++..+...
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~------------- 117 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAK------------- 117 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-------------
Confidence 33445556666666666666665543 1 11 2455566666666666666666666543200
Q ss_pred hccccchHHHHHHHHHHHHcC-CCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCC---------CCHHHHHHHHHHHHhc
Q 037236 583 CSQLSALRLGKETHCYALKAI-LTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKD---------KDVTSWNAIIGGHGIH 652 (953)
Q Consensus 583 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~ 652 (953)
+.+ .......+..+...|...|++++|...|++... ....+|..+...|...
T Consensus 118 ------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 179 (411)
T 4a1s_A 118 ------------------SMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAK 179 (411)
T ss_dssp ------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ------------------HccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHc
Confidence 000 011334566777888888888888888877641 1234778888888888
Q ss_pred CC-----------------hHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-
Q 037236 653 GY-----------------GKEAIELFEKMLAL----GHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK- 709 (953)
Q Consensus 653 g~-----------------~~~A~~l~~~m~~~----g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~- 709 (953)
|+ +++|++.+++..+. +-.| ...++..+...+...|++++|..++++..+...-.++
T Consensus 180 g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 259 (411)
T 4a1s_A 180 GKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDR 259 (411)
T ss_dssp HHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCc
Confidence 99 88898888887652 1112 2356778888899999999999999988664322222
Q ss_pred ---hhHHHHHHHHHhhcCCHHHHHHHHHhCCC----CCC----hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC---
Q 037236 710 ---LEHYACVVDMLGRAGKLDDAFKLIIEMPE----EAD----AGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDK--- 775 (953)
Q Consensus 710 ---~~~~~~lv~~l~~~g~~~eA~~~~~~~~~----~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~--- 775 (953)
...+..+..+|...|++++|.+.+++... ..+ ..+|..+...+...|+++.|...+++++++.++.
T Consensus 260 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 339 (411)
T 4a1s_A 260 AAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDR 339 (411)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence 23678888999999999999998876642 111 5678888888999999999999999999875543
Q ss_pred ---cchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 776 ---AENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 776 ---~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
..++..++.+|...|++++|...++...+
T Consensus 340 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 340 IGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 44888999999999999999998877655
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.33 E-value=1.6e-11 Score=136.82 Aligned_cols=267 Identities=11% Similarity=0.047 Sum_probs=194.1
Q ss_pred hhhHhhHHHHHHhcCChhHHHHHHHhccc--C-C----cccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHH
Q 037236 507 SFTGISLLSLYMHCEKSSSARVLFDEMED--K-S----LVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSI 579 (953)
Q Consensus 507 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 579 (953)
...+..+...+.+.|++++|...|++..+ + + ...|..+...|...|++++|+..|++......
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~---------- 78 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLAR---------- 78 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH----------
Confidence 33444555666666777777776666542 1 1 13455566666666666666666666543210
Q ss_pred HHHhccccchHHHHHHHHHHHHcCCC-CCccHHHHHHHHHHhcCCHHHHHHHhhhcCC-----CC----HHHHHHHHHHH
Q 037236 580 LSACSQLSALRLGKETHCYALKAILT-NDAFVACSIIDMYAKCGCLEQSRRVFDRLKD-----KD----VTSWNAIIGGH 649 (953)
Q Consensus 580 l~a~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~ 649 (953)
+.+.. ....++..+...|...|++++|...|++... ++ ..++..+...|
T Consensus 79 ---------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 137 (406)
T 3sf4_A 79 ---------------------TIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVY 137 (406)
T ss_dssp ---------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred ---------------------hccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 00000 1244566778888999999999998887652 22 44788899999
Q ss_pred HhcCC--------------------hHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Q 037236 650 GIHGY--------------------GKEAIELFEKMLAL----GHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLH 704 (953)
Q Consensus 650 ~~~g~--------------------~~~A~~l~~~m~~~----g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 704 (953)
...|+ +++|++.+++..+. +-.| ...++..+...+...|++++|..++++..+..
T Consensus 138 ~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 217 (406)
T 3sf4_A 138 HAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 217 (406)
T ss_dssp HHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH
T ss_pred HHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 99999 99999999987652 1122 23568888899999999999999999987643
Q ss_pred CCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhCCC----CCC----hhHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 037236 705 AVKPK----LEHYACVVDMLGRAGKLDDAFKLIIEMPE----EAD----AGIWSSLLRSCRTYGALKMGEKVAKTLLELE 772 (953)
Q Consensus 705 ~~~p~----~~~~~~lv~~l~~~g~~~eA~~~~~~~~~----~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~ 772 (953)
.-.++ ...+..+..+|.+.|++++|.+.+++... .++ ..++..+...+...|+++.|...+++++++.
T Consensus 218 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 297 (406)
T 3sf4_A 218 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 297 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 33333 34788899999999999999999987642 122 5678889999999999999999999999986
Q ss_pred CCC------cchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 773 PDK------AENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 773 p~~------~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
|.. ..++..++.+|...|++++|...++...+
T Consensus 298 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 298 QELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 544 66889999999999999999998777644
No 64
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.31 E-value=2.3e-11 Score=131.25 Aligned_cols=262 Identities=11% Similarity=0.055 Sum_probs=183.6
Q ss_pred hHHHHHHhcCChhHHHHHHHhccc--C-C----cccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhc
Q 037236 512 SLLSLYMHCEKSSSARVLFDEMED--K-S----LVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACS 584 (953)
Q Consensus 512 ~li~~y~~~g~~~~A~~~f~~~~~--~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 584 (953)
.....+...|++++|...|+++.+ + + ...|..+...|...|++++|++.+++......
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~--------------- 74 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLAR--------------- 74 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh---------------
Confidence 344556666677777666666542 1 2 23455566666666666666666666543200
Q ss_pred cccchHHHHHHHHHHHHcCCC-CCccHHHHHHHHHHhcCCHHHHHHHhhhcCC-----CC----HHHHHHHHHHHHhcCC
Q 037236 585 QLSALRLGKETHCYALKAILT-NDAFVACSIIDMYAKCGCLEQSRRVFDRLKD-----KD----VTSWNAIIGGHGIHGY 654 (953)
Q Consensus 585 ~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~ 654 (953)
+.+.. ....++..+...|...|++++|...|++... ++ ..++..+...|...|+
T Consensus 75 ----------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 138 (338)
T 3ro2_A 75 ----------------TIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 138 (338)
T ss_dssp ----------------HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------cccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence 00000 1234566677888888888888888877541 22 3377788888888888
Q ss_pred --------------------hHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC
Q 037236 655 --------------------GKEAIELFEKMLAL----GHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK 709 (953)
Q Consensus 655 --------------------~~~A~~l~~~m~~~----g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 709 (953)
+++|++.+++..+. +-.| ...++..+...+...|++++|..+++...+...-.++
T Consensus 139 ~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 218 (338)
T 3ro2_A 139 SFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD 218 (338)
T ss_dssp TSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred ccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC
Confidence 88998888887652 1122 2346778888889999999999999988654322222
Q ss_pred ----hhHHHHHHHHHhhcCCHHHHHHHHHhCCC----CCC----hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC--
Q 037236 710 ----LEHYACVVDMLGRAGKLDDAFKLIIEMPE----EAD----AGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDK-- 775 (953)
Q Consensus 710 ----~~~~~~lv~~l~~~g~~~eA~~~~~~~~~----~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~-- 775 (953)
...+..+...|.+.|++++|.+.+++... .++ ..++..+...+...|+++.|...+++++++.|..
T Consensus 219 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 298 (338)
T 3ro2_A 219 KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKD 298 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Confidence 33678888899999999999998877542 122 5577888888999999999999999999876543
Q ss_pred ----cchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 776 ----AENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 776 ----~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
..++..++.+|...|++++|...+++..+
T Consensus 299 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 299 RIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 44788999999999999999998887765
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.28 E-value=2.4e-10 Score=121.89 Aligned_cols=183 Identities=15% Similarity=0.090 Sum_probs=135.8
Q ss_pred HHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC--CC-CHH-HHHHHHHHHHhcCChHHHHHHHHHH
Q 037236 590 RLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK--DK-DVT-SWNAIIGGHGIHGYGKEAIELFEKM 665 (953)
Q Consensus 590 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~-~~~-~~~~li~~~~~~g~~~~A~~l~~~m 665 (953)
++|..+++.+++.-.+.+...|..++..+.+.|++++|..+|++.. .| +.. .|..++..+.+.|++++|..+|++.
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 4555555555542112255677888888888889999998888776 23 343 7888888888889999999999998
Q ss_pred HHCCCCC-CHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC----
Q 037236 666 LALGHKP-DTFTFVGILMACN-HAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE---- 738 (953)
Q Consensus 666 ~~~g~~P-~~~t~~~ll~a~~-~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~---- 738 (953)
++. .| +...|........ ..|++++|..+|+.+++.. |+ ...|..+++.+.+.|++++|..+|++...
T Consensus 161 ~~~--~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l 235 (308)
T 2ond_A 161 RED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY---GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred Hhc--CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCC
Confidence 884 34 4444544433322 3689999999999887743 44 67788888888899999999999887753
Q ss_pred CC--ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcc
Q 037236 739 EA--DAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAE 777 (953)
Q Consensus 739 ~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~ 777 (953)
+| ...+|..++.....+|+.+.|..+++++++..|+++.
T Consensus 236 ~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~ 276 (308)
T 2ond_A 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccc
Confidence 33 3568888888888899999999999999999987654
No 66
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.26 E-value=1.3e-10 Score=117.80 Aligned_cols=186 Identities=12% Similarity=0.013 Sum_probs=97.3
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHhhhcC---C-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 037236 607 DAFVACSIIDMYAKCGCLEQSRRVFDRLK---D-KDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGIL 681 (953)
Q Consensus 607 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll 681 (953)
++..+..+...|.+.|++++|...|++.. + ++...|..+..++...|++++|++.|++.++ ..| +...+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 34455555556666666666666666543 2 4555555555556666666666666666655 344 334455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhcCCCCC-h-------hHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCC---hhHHHHHH
Q 037236 682 MACNHAGLVENGLKYFSQMQKLHAVKPK-L-------EHYACVVDMLGRAGKLDDAFKLIIEMPE-EAD---AGIWSSLL 749 (953)
Q Consensus 682 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~-------~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~~---~~~~~~ll 749 (953)
.++...|++++|...|++..+. .|+ . ..|..+...+.+.|++++|++.+++... .|+ +..|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 5666666666666666655542 232 2 3344555555555555555555555433 232 23444444
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 750 RSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 750 ~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
..+.. .+...++++..+.+.++..| ........+.+++|...+++..+
T Consensus 161 ~~~~~-----~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 161 VLFYN-----NGADVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHHHH-----HHHHHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhh
Confidence 44432 23344445555544443333 22233344445888887776655
No 67
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.25 E-value=1.5e-08 Score=117.99 Aligned_cols=444 Identities=10% Similarity=-0.012 Sum_probs=262.6
Q ss_pred HHHHHHHHHhCCCCCchHHHHHHHhhHhcCChhHHHHHHhcCCC---CCcccHHHHHHHHHcCCC---hhHHHHHHHHHH
Q 037236 288 ILVHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFDKNNN---KNVVSWNTIIGAFSMAGD---VCGTFDLLRKMQ 361 (953)
Q Consensus 288 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~---~~~A~~l~~~m~ 361 (953)
...++..+... +-|...|..++..+.+.+.++.++.+|+++.. .....|...+..-.+.+. .+.+.++|++..
T Consensus 52 i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal 130 (679)
T 4e6h_A 52 IGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCL 130 (679)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHH
Confidence 34445555554 56888999999999888999999999988664 345568888888888888 899999999887
Q ss_pred hccCCCCCchhhHHHHHHHhccccch--------HHHHHHHHHHHH-cCC-CCc-hhHHHHHHHHHHhcCCcccHHHHhc
Q 037236 362 MKEEEMKPNEVTVLNVLTSCSEKSEL--------LSLKELHGYSLR-HGF-DND-ELVANAFVVAYAKCGSEISAENVFH 430 (953)
Q Consensus 362 ~~g~~~~p~~~t~~~ll~~~~~~~~~--------~~a~~i~~~~~~-~g~-~~~-~~~~~~li~~y~~~g~~~~A~~~f~ 430 (953)
.... ..|+...|..-+.-..+.++. +..+++|+.++. .|. .++ ...|...+......+...
T Consensus 131 ~~~~-~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~------- 202 (679)
T 4e6h_A 131 SKEL-GNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVN------- 202 (679)
T ss_dssp CSSS-CCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCS-------
T ss_pred HhcC-CCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccC-------
Confidence 7521 137766666555544433332 334466665554 244 442 345555555443211000
Q ss_pred cCCCCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHH---HHHhh----------ccccccchhhHHHHH
Q 037236 431 GMDSRTVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGS---LILAC----------THLKSLHRGKEIHGF 497 (953)
Q Consensus 431 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~---ll~~~----------~~~~~~~~a~~i~~~ 497 (953)
.+..+++.+.+..+|+..+......-..+|.. .-... ....+++.|+..+..
T Consensus 203 ---------------~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e 267 (679)
T 4e6h_A 203 ---------------KFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQD 267 (679)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------cHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHH
Confidence 00112233444555555443100000011110 00000 000111222222222
Q ss_pred HHHh--CCC---Cch-hhHhhHHHHHHhcCChhHHHHHHHhcccCC------cccHHHHHHHHHhcCC-------hhHHH
Q 037236 498 VIRN--GLE---GDS-FTGISLLSLYMHCEKSSSARVLFDEMEDKS------LVSWNTMIAGYSQNKL-------PVEAI 558 (953)
Q Consensus 498 ~~~~--g~~---~~~-~~~~~li~~y~~~g~~~~A~~~f~~~~~~~------~~~~~~li~~~~~~g~-------~~~A~ 558 (953)
+.+. ++. |.. ...+ ...++..+ ...|...+.--..++. .+.+.
T Consensus 268 ~~~~~~~l~r~~p~~~~~~~------------------~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~ 329 (679)
T 4e6h_A 268 WLNITKGLKRNLPITLNQAT------------------ESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMT 329 (679)
T ss_dssp HHHHTTTCCCCCCSSSTTCC------------------TTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHH
T ss_pred HHHHHHhHhhccccccccch------------------hccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHH
Confidence 1110 100 000 0000 00000000 1234444432222221 12345
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHhccccchHHHH-HHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCC-
Q 037236 559 VLFRRMFSIGVQPCEISIVSILSACSQLSALRLGK-ETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKD- 636 (953)
Q Consensus 559 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~- 636 (953)
.+|++....- .-+...|.....-+...|+.+.+. .+++...... +.+...+-.++..+.+.|+++.|..+|+++..
T Consensus 330 ~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~ 407 (679)
T 4e6h_A 330 YVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDR 407 (679)
T ss_dssp HHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 5666666542 234455555555566667777885 8888887643 33566677888888899999999999987752
Q ss_pred ------------C------------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhc-CCH
Q 037236 637 ------------K------------DVTSWNAIIGGHGIHGYGKEAIELFEKMLAL-GHKPDTFTFVGILMACNHA-GLV 690 (953)
Q Consensus 637 ------------~------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~P~~~t~~~ll~a~~~~-g~~ 690 (953)
| ....|...+....+.|..+.|..+|.++++. + .+....|...+..-.+. +++
T Consensus 408 l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~ 486 (679)
T 4e6h_A 408 IHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDT 486 (679)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCC
T ss_pred HHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCH
Confidence 2 1236888888888899999999999999985 2 11233444333333333 559
Q ss_pred HHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CC----ChhHHHHHHHHHHhcCChhHHHHHH
Q 037236 691 ENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPE-EA----DAGIWSSLLRSCRTYGALKMGEKVA 765 (953)
Q Consensus 691 ~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~----~~~~~~~ll~~~~~~g~~~~a~~~~ 765 (953)
+.|..+|+..++.++- +...+...++.+...|+.+.|..+|++... .| ...+|..++..-..+|+.+.+..+.
T Consensus 487 e~Ar~ife~~Lk~~p~--~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~ 564 (679)
T 4e6h_A 487 KTACKVLELGLKYFAT--DGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLE 564 (679)
T ss_dssp HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHCCC--chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999886543 345667888888999999999999998765 23 3468999999999999999999999
Q ss_pred HHHhccCCCCcch
Q 037236 766 KTLLELEPDKAEN 778 (953)
Q Consensus 766 ~~~~~l~p~~~~~ 778 (953)
+++.+..|+++..
T Consensus 565 ~R~~~~~P~~~~~ 577 (679)
T 4e6h_A 565 KRFFEKFPEVNKL 577 (679)
T ss_dssp HHHHHHSTTCCHH
T ss_pred HHHHHhCCCCcHH
Confidence 9999999987654
No 68
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.25 E-value=9.6e-11 Score=132.94 Aligned_cols=176 Identities=9% Similarity=-0.001 Sum_probs=156.9
Q ss_pred HHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037236 624 LEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYG-KEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFS 698 (953)
Q Consensus 624 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~ 698 (953)
+++|...+++.. ..+...|..+...|...|++ ++|++.|++.++ ..| +...+..+..+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVK--LEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 556666666543 45788999999999999999 999999999999 467 57889999999999999999999999
Q ss_pred HHHHhcCCCCChhHHHHHHHHHhhc---------CCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhc--------CChh
Q 037236 699 QMQKLHAVKPKLEHYACVVDMLGRA---------GKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTY--------GALK 759 (953)
Q Consensus 699 ~m~~~~~~~p~~~~~~~lv~~l~~~---------g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~--------g~~~ 759 (953)
+..+ +.|+...+..+..+|.+. |++++|++.+++... +.+...|..+..++... |+++
T Consensus 162 ~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 9976 678888899999999999 999999999998754 45688999999999988 9999
Q ss_pred HHHHHHHHHhccCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 760 MGEKVAKTLLELEP---DKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 760 ~a~~~~~~~~~l~p---~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
.|...++++++++| +++.+|..++.+|...|++++|...+++..+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 286 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA 286 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999 9999999999999999999999998887765
No 69
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.24 E-value=9e-11 Score=126.54 Aligned_cols=273 Identities=14% Similarity=0.085 Sum_probs=179.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccchhhHHHHHHHHhCCCCchhhHhhHHHHHH
Q 037236 439 SWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYM 518 (953)
Q Consensus 439 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~ 518 (953)
.+......+...|++++|+..|+++.+.. |+.... ...++..+...|.
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~------------------------------~~~~~~~l~~~~~ 54 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKT------------------------------LSAIYSQLGNAYF 54 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHH------------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHH------------------------------HHHHHHHHHHHHH
Confidence 44555667788888888888888887642 321100 0233455566677
Q ss_pred hcCChhHHHHHHHhccc---------CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CChhhHHHHHHHhccccc
Q 037236 519 HCEKSSSARVLFDEMED---------KSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQ-PCEISIVSILSACSQLSA 588 (953)
Q Consensus 519 ~~g~~~~A~~~f~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~~~ 588 (953)
..|++++|...|++..+ .....|..+...|...|++++|+..|++..+.... ++...
T Consensus 55 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------------- 121 (338)
T 3ro2_A 55 YLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVG------------- 121 (338)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH-------------
T ss_pred HcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchH-------------
Confidence 77777777777765432 12346777888888999999999998887653111 11100
Q ss_pred hHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCC--------------------HHHHHHHhhhcC-------C--CCH
Q 037236 589 LRLGKETHCYALKAILTNDAFVACSIIDMYAKCGC--------------------LEQSRRVFDRLK-------D--KDV 639 (953)
Q Consensus 589 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~--------------------~~~A~~~~~~~~-------~--~~~ 639 (953)
...++..+...|...|+ +++|...+++.. . ...
T Consensus 122 ------------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 183 (338)
T 3ro2_A 122 ------------------EARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQG 183 (338)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred ------------------HHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 11233444455555555 555555555432 1 123
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC----h
Q 037236 640 TSWNAIIGGHGIHGYGKEAIELFEKMLALGH-KPD----TFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK----L 710 (953)
Q Consensus 640 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~P~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~ 710 (953)
..+..+...|...|++++|++.+++..+... .++ ..++..+...+...|++++|..+++...+...-.++ .
T Consensus 184 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 263 (338)
T 3ro2_A 184 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 263 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 4677788888888999999988888775310 011 236778888888999999999998887654322222 4
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhCCC----CCC----hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 037236 711 EHYACVVDMLGRAGKLDDAFKLIIEMPE----EAD----AGIWSSLLRSCRTYGALKMGEKVAKTLLELEPD 774 (953)
Q Consensus 711 ~~~~~lv~~l~~~g~~~eA~~~~~~~~~----~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~ 774 (953)
..+..+..+|.+.|++++|.+.+++... .++ ..++..+...+...|+++.|...+++++++.++
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 264 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 5677788889999999999988877642 122 447788888899999999999999999988764
No 70
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.24 E-value=2.2e-10 Score=116.14 Aligned_cols=206 Identities=12% Similarity=0.050 Sum_probs=163.7
Q ss_pred CChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHH
Q 037236 571 PCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIG 647 (953)
Q Consensus 571 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~ 647 (953)
.|+..+...-..+...|++++|...+..+.+....++...+..+...|.+.|++++|...|++.. +.+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 35567777778888999999999999999998765677777779999999999999999999876 346678999999
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC---hhHHHHH
Q 037236 648 GHGIHGYGKEAIELFEKMLALGHKPD-T-------FTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK---LEHYACV 716 (953)
Q Consensus 648 ~~~~~g~~~~A~~l~~~m~~~g~~P~-~-------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~l 716 (953)
.|...|++++|++.|++.++ ..|+ . ..|..+...+...|++++|+..|+.+++ +.|+ ...|..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIK--AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence 99999999999999999999 4674 4 4578888899999999999999999865 5675 5677788
Q ss_pred HHHHhhcCCH--HHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 037236 717 VDMLGRAGKL--DDAFKLIIEMPEEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAG 788 (953)
Q Consensus 717 v~~l~~~g~~--~eA~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 788 (953)
..+|...|+. ++|..+. ..+...+..+. ....++++.|...++++++++|+++.+...|+.+...
T Consensus 160 ~~~~~~~~~~~~~~a~~~~-----~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~~ 226 (228)
T 4i17_A 160 GVLFYNNGADVLRKATPLA-----SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAM 226 (228)
T ss_dssp HHHHHHHHHHHHHHHGGGT-----TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcc-----cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHh
Confidence 8888776654 3332221 22333333332 3456778999999999999999999998888877543
No 71
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.22 E-value=5.6e-11 Score=132.72 Aligned_cols=268 Identities=13% Similarity=0.035 Sum_probs=197.2
Q ss_pred chHHHHHHhhccccccchhhHHHHHHHHhCCCCc---hhhHhhHHHHHHhcCChhHHHHHHHhccc---------CCccc
Q 037236 473 FSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGD---SFTGISLLSLYMHCEKSSSARVLFDEMED---------KSLVS 540 (953)
Q Consensus 473 ~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~---~~~~~~li~~y~~~g~~~~A~~~f~~~~~---------~~~~~ 540 (953)
..+..+...+...|+++.|...+..+++.+.... ..++..+...|...|++++|...|++..+ .....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3444556677889999999999999999855422 14788889999999999999999987653 13357
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHH
Q 037236 541 WNTMIAGYSQNKLPVEAIVLFRRMFSIGVQ-PCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYA 619 (953)
Q Consensus 541 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 619 (953)
|..+...|...|++++|+..|++..+.... .+.. .....+..+...|.
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------------------~~~~~~~~l~~~~~ 177 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRL-------------------------------SEGRALYNLGNVYH 177 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH-------------------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchH-------------------------------HHHHHHHHHHHHHH
Confidence 888889999999999999999987653100 0000 02234455566666
Q ss_pred hcCC-----------------HHHHHHHhhhcC-------C--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-
Q 037236 620 KCGC-----------------LEQSRRVFDRLK-------D--KDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP- 672 (953)
Q Consensus 620 ~~g~-----------------~~~A~~~~~~~~-------~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P- 672 (953)
..|+ +++|...|++.. . .....|..+...|...|++++|+..|++..+. .|
T Consensus 178 ~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~~ 255 (411)
T 4a1s_A 178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRI--ARE 255 (411)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHH
T ss_pred HcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--HHh
Confidence 6666 666666665543 1 12347778888899999999999999988763 22
Q ss_pred --C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhCCC----
Q 037236 673 --D----TFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK----LEHYACVVDMLGRAGKLDDAFKLIIEMPE---- 738 (953)
Q Consensus 673 --~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~lv~~l~~~g~~~eA~~~~~~~~~---- 738 (953)
+ ..++..+...+...|++++|..+|+++.+...-..+ ...+..+..+|.+.|++++|.+.+++...
T Consensus 256 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 256 FGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE 335 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 2 236788888999999999999999888664322122 46678888999999999999999887643
Q ss_pred CCC----hhHHHHHHHHHHhcCChhHHHHHHHHHhccCC
Q 037236 739 EAD----AGIWSSLLRSCRTYGALKMGEKVAKTLLELEP 773 (953)
Q Consensus 739 ~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p 773 (953)
.++ ..++..+...+...|+++.|...+++++++.+
T Consensus 336 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 336 LGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred CCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 122 34778888889999999999999999998876
No 72
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.22 E-value=2.5e-11 Score=143.17 Aligned_cols=163 Identities=10% Similarity=0.145 Sum_probs=145.9
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 037236 607 DAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILM 682 (953)
Q Consensus 607 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~ 682 (953)
+...++.|...|.+.|++++|.+.|++.. +.+..+|+.+...|.+.|++++|++.|++.++ +.| +...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 45678889999999999999999999876 45688999999999999999999999999999 678 5788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CC-ChhHHHHHHHHHHhcCChh
Q 037236 683 ACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE-EA-DAGIWSSLLRSCRTYGALK 759 (953)
Q Consensus 683 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~-~~~~~~~ll~~~~~~g~~~ 759 (953)
++...|++++|++.|++.++ +.|+ ...|..+..+|.+.|++++|++.+++... .| +...|..|+..+...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~---l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQ---INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 99999999999999999987 5677 78899999999999999999999998754 44 5789999999999999999
Q ss_pred HHHHHHHHHhccCCC
Q 037236 760 MGEKVAKTLLELEPD 774 (953)
Q Consensus 760 ~a~~~~~~~~~l~p~ 774 (953)
.|++.+++++++.|+
T Consensus 163 ~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 163 DYDERMKKLVSIVAD 177 (723)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChh
Confidence 999999999987554
No 73
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.22 E-value=5.6e-10 Score=123.24 Aligned_cols=230 Identities=12% Similarity=0.052 Sum_probs=134.7
Q ss_pred HHHHHHhcCChhHHHHHHHhccc-----C----CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHh
Q 037236 513 LLSLYMHCEKSSSARVLFDEMED-----K----SLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSAC 583 (953)
Q Consensus 513 li~~y~~~g~~~~A~~~f~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 583 (953)
....+...|++++|...|++..+ + ...+|..+...|...|++++|+..+++..+.-...+.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~---------- 178 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA---------- 178 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST----------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc----------
Confidence 34455666777777777666532 1 1235666666666777777777666665442100000
Q ss_pred ccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCC-----CC----HHHHHHHHHHHHhcCC
Q 037236 584 SQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKD-----KD----VTSWNAIIGGHGIHGY 654 (953)
Q Consensus 584 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~ 654 (953)
. ......+++.+...|...|++++|...|++... ++ ..+|..+...|...|+
T Consensus 179 -----~--------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~ 239 (383)
T 3ulq_A 179 -----Y--------------NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQ 239 (383)
T ss_dssp -----T--------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred -----c--------------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCC
Confidence 0 000123556677777788888888777776541 11 1367777778888888
Q ss_pred hHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC---hhHHHHHHHHHhhcCC-
Q 037236 655 GKEAIELFEKMLAL----GHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK---LEHYACVVDMLGRAGK- 725 (953)
Q Consensus 655 ~~~A~~l~~~m~~~----g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~lv~~l~~~g~- 725 (953)
+++|++.|++..+. +..| ...++..+..++...|++++|..++++..+...-.++ ...+..+..+|...|+
T Consensus 240 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 319 (383)
T 3ulq_A 240 YEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDE 319 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCH
T ss_pred HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcH
Confidence 88888888877662 2224 3456777777888888888888888777553211112 2234556667777777
Q ss_pred --HHHHHHHHHhCCCCCC-hhHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 037236 726 --LDDAFKLIIEMPEEAD-AGIWSSLLRSCRTYGALKMGEKVAKTLLEL 771 (953)
Q Consensus 726 --~~eA~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l 771 (953)
+++|++++++....|+ ..++..+...+...|+++.|...+++++++
T Consensus 320 ~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 320 EAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 6777777766543222 223444444555555555555555554443
No 74
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.21 E-value=2.4e-10 Score=111.11 Aligned_cols=156 Identities=16% Similarity=0.146 Sum_probs=85.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHh
Q 037236 644 AIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLG 721 (953)
Q Consensus 644 ~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~ 721 (953)
.+...+...|++++|+..|+++.+. .| +..++..+...+...|++++|..+++.+.+. .|+ ...+..+...+.
T Consensus 13 ~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 13 DKGISHAKAGRYSQAVMLLEQVYDA--DAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD---APDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHTTTCCT--TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHh--CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHH
Confidence 3333444444444444444444331 22 3333444444444444444444444444332 121 334444444455
Q ss_pred hcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHH
Q 037236 722 RAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMR 799 (953)
Q Consensus 722 ~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 799 (953)
+.|++++|.+.++++.. +.+..+|..+...+...|+++.|...++++++..|+++..+..++.+|...|++++|...+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55555555554444321 2345566666666777777777777777777777777777777777777777777777776
Q ss_pred HHHHH
Q 037236 800 QRMKE 804 (953)
Q Consensus 800 ~~m~~ 804 (953)
+...+
T Consensus 168 ~~~~~ 172 (186)
T 3as5_A 168 KKANE 172 (186)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66544
No 75
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.19 E-value=7.7e-10 Score=117.90 Aligned_cols=194 Identities=9% Similarity=0.059 Sum_probs=157.2
Q ss_pred CccHHHHHHHHHH-------hcCCH-------HHHHHHhhhcC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 037236 607 DAFVACSIIDMYA-------KCGCL-------EQSRRVFDRLK----DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLAL 668 (953)
Q Consensus 607 ~~~~~~~li~~y~-------~~g~~-------~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 668 (953)
++.+|..++..+. +.|++ ++|..+|++.. +.+...|..++..+...|++++|.++|+++++
T Consensus 49 ~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~- 127 (308)
T 2ond_A 49 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA- 127 (308)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-
T ss_pred CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-
Confidence 4555555555554 35775 89999999765 33667999999999999999999999999999
Q ss_pred CCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHh-hcCCHHHHHHHHHhCCC--CCCh
Q 037236 669 GHKPD-TF-TFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLG-RAGKLDDAFKLIIEMPE--EADA 742 (953)
Q Consensus 669 g~~P~-~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~-~~g~~~eA~~~~~~~~~--~~~~ 742 (953)
+.|+ .. .|..++..+.+.|++++|..+|+++++ ..|+ ...|...+.... ..|++++|.++|++... +.++
T Consensus 128 -~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~---~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~ 203 (308)
T 2ond_A 128 -IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIP 203 (308)
T ss_dssp -SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT---STTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCH
T ss_pred -ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 6774 33 799999999999999999999999976 3344 455544444422 37999999999998754 4568
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHhcc---CCC-CcchHHHHHHHHHhcCCchHHHHHHHHHHHC
Q 037236 743 GIWSSLLRSCRTYGALKMGEKVAKTLLEL---EPD-KAENYVLVSNIYAGSEKWDDVRMMRQRMKER 805 (953)
Q Consensus 743 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~l---~p~-~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 805 (953)
..|..++..+...|+++.|..+++++++. .|+ ....+..+++++...|++++|..+.+.+.+.
T Consensus 204 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 204 EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 89999999999999999999999999995 554 6778889999999999999999988877664
No 76
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.18 E-value=5.3e-11 Score=126.96 Aligned_cols=236 Identities=12% Similarity=0.110 Sum_probs=153.0
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHHcCC---CCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHH
Q 037236 538 LVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGV---QPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSI 614 (953)
Q Consensus 538 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 614 (953)
..+|..+...|...|++++|+.+|+++.+... .++. ......+..+
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~-------------------------------~~~~~~~~~l 75 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDH-------------------------------PDVATMLNIL 75 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSS-------------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCC-------------------------------HHHHHHHHHH
Confidence 35788889999999999999999999876310 0000 0123445566
Q ss_pred HHHHHhcCCHHHHHHHhhhcCC-----------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCC-CHHH
Q 037236 615 IDMYAKCGCLEQSRRVFDRLKD-----------KDVTSWNAIIGGHGIHGYGKEAIELFEKMLAL------GHKP-DTFT 676 (953)
Q Consensus 615 i~~y~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~P-~~~t 676 (953)
...|...|++++|...|++... ....+|..+...|...|++++|+..|+++.+. +-.| ...+
T Consensus 76 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 155 (311)
T 3nf1_A 76 ALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQ 155 (311)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 6677777777777777766541 12446777788888888888888888887764 2223 3456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhc-----CCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC----------CC
Q 037236 677 FVGILMACNHAGLVENGLKYFSQMQKLH-----AVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE----------EA 740 (953)
Q Consensus 677 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~----------~~ 740 (953)
+..+...+...|++++|..+|+.+.+.. +..|. ...+..+..+|.+.|++++|.+.++++.. .+
T Consensus 156 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 235 (311)
T 3nf1_A 156 LNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235 (311)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 7777888888888888888888876531 11333 45677788888888888888888876542 11
Q ss_pred -Chh------HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 741 -DAG------IWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 741 -~~~------~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
... .+..+...+...+.++.+...++++.+..|.++.++..++.+|...|++++|.+.+++..+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 112 2223333344556677777788888888899999999999999999999999998776643
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.17 E-value=8.4e-10 Score=107.22 Aligned_cols=167 Identities=13% Similarity=0.035 Sum_probs=144.9
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 037236 609 FVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMAC 684 (953)
Q Consensus 609 ~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~ 684 (953)
..+..+...|...|++++|...|+++. +.+...|..+...+...|++++|+..++++.+. .| +...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHH
Confidence 456677888999999999999999987 347788999999999999999999999999984 45 677888999999
Q ss_pred HhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHH
Q 037236 685 NHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGE 762 (953)
Q Consensus 685 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~ 762 (953)
...|++++|..+++.+.+.. ..+...+..+..+|.+.|++++|.+.++++.. +.+..+|..+...+...|+++.|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN--PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC--cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999997742 23477888899999999999999999988753 446789999999999999999999
Q ss_pred HHHHHHhccCCCCcchH
Q 037236 763 KVAKTLLELEPDKAENY 779 (953)
Q Consensus 763 ~~~~~~~~l~p~~~~~~ 779 (953)
..+++++++.|+++...
T Consensus 165 ~~~~~~~~~~~~~~~~~ 181 (186)
T 3as5_A 165 PHFKKANELDEGASVEL 181 (186)
T ss_dssp HHHHHHHHHHHCCCGGG
T ss_pred HHHHHHHHcCCCchhhH
Confidence 99999999999877543
No 78
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.16 E-value=3.1e-10 Score=125.32 Aligned_cols=196 Identities=13% Similarity=0.090 Sum_probs=150.9
Q ss_pred ccHHHHHHHHHHhcCCHHHHHHHhhhcC-----CCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC---
Q 037236 608 AFVACSIIDMYAKCGCLEQSRRVFDRLK-----DKD-----VTSWNAIIGGHGIHGYGKEAIELFEKMLALGH-KPD--- 673 (953)
Q Consensus 608 ~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~P~--- 673 (953)
..++..+...|...|++++|...+.+.. .++ ..+++.+...|...|++++|++.|++.++... .++
T Consensus 143 a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 222 (383)
T 3ulq_A 143 AEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQL 222 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHH
Confidence 3566778888999999998888888765 122 35788899999999999999999999886311 112
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc---CCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC----CCCh--
Q 037236 674 -TFTFVGILMACNHAGLVENGLKYFSQMQKLH---AVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE----EADA-- 742 (953)
Q Consensus 674 -~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~----~~~~-- 742 (953)
..++..+...|...|++++|..+|++..+.. +..|. ...+..+..+|.+.|++++|.+.+++... .+++
T Consensus 223 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 302 (383)
T 3ulq_A 223 MGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIY 302 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 2478889999999999999999999987632 23244 66788999999999999999999987643 1222
Q ss_pred -hHHHHHHHHHHhcCC---hhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 743 -GIWSSLLRSCRTYGA---LKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 743 -~~~~~ll~~~~~~g~---~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
..+..+...+...|+ ++.|...+++. ...|.....+..|+.+|...|++++|...+++..+
T Consensus 303 ~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 303 LSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 235667777788888 77777777765 34455667888999999999999999998777654
No 79
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.16 E-value=4.8e-11 Score=127.35 Aligned_cols=241 Identities=12% Similarity=0.059 Sum_probs=164.8
Q ss_pred chhhHhhHHHHHHhcCChhHHHHHHHhccc--------C---CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChh
Q 037236 506 DSFTGISLLSLYMHCEKSSSARVLFDEMED--------K---SLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEI 574 (953)
Q Consensus 506 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 574 (953)
+..++..+...|...|++++|...|+++.+ . ....|..+...|...|++++|+..|++.......
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~---- 101 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK---- 101 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH----
Confidence 456788899999999999999999998764 2 2346788889999999999999999988753100
Q ss_pred hHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCC-----------CCHHHHH
Q 037236 575 SIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKD-----------KDVTSWN 643 (953)
Q Consensus 575 t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----------~~~~~~~ 643 (953)
............+..+...|...|++++|...|+++.. .....|.
T Consensus 102 ------------------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 157 (311)
T 3nf1_A 102 ------------------------TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLN 157 (311)
T ss_dssp ------------------------HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ------------------------HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 00000001234566677778888888888888776541 1345688
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc------CCCCC-
Q 037236 644 AIIGGHGIHGYGKEAIELFEKMLAL------GHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLH------AVKPK- 709 (953)
Q Consensus 644 ~li~~~~~~g~~~~A~~l~~~m~~~------g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~------~~~p~- 709 (953)
.+...|...|++++|++.|+++.+. +-.| ...++..+..++...|++++|..+|+++.+.. ...|.
T Consensus 158 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 237 (311)
T 3nf1_A 158 NLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDEN 237 (311)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcch
Confidence 8889999999999999999998874 2244 34578888999999999999999999987531 12222
Q ss_pred ------hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CC-ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 037236 710 ------LEHYACVVDMLGRAGKLDDAFKLIIEMPE-EA-DAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPD 774 (953)
Q Consensus 710 ------~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~ 774 (953)
...+..+...+...+.+.+|...++.... .| +..+|..+...+...|+++.|...+++++++.|+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 238 KPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 11222333444555666666667766653 23 4668899999999999999999999999998875
No 80
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.14 E-value=9.7e-08 Score=111.14 Aligned_cols=213 Identities=9% Similarity=-0.014 Sum_probs=164.9
Q ss_pred HHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHH-HHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 037236 591 LGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSR-RVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKML 666 (953)
Q Consensus 591 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~-~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 666 (953)
....+++.++... .....+|-..+..+.+.|+.++|. .+|++.. +++...|-..+...-..|++++|.++|++++
T Consensus 327 Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 327 RMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3445676666653 337788888888888999999996 9998776 4567778889999999999999999999998
Q ss_pred HCCC---------CCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcC-
Q 037236 667 ALGH---------KPD------------TFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAG- 724 (953)
Q Consensus 667 ~~g~---------~P~------------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g- 724 (953)
.... .|+ ...|...+....+.|..+.|..+|..+++..+ .+....|...+.+-.+.|
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~ 484 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISK 484 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTS
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCC
Confidence 7310 142 23577778888888999999999999976411 112344544444445555
Q ss_pred CHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCC---CcchHHHHHHHHHhcCCchHHHHHH
Q 037236 725 KLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPD---KAENYVLVSNIYAGSEKWDDVRMMR 799 (953)
Q Consensus 725 ~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~---~~~~~~~l~~~y~~~g~~~~a~~~~ 799 (953)
+.+.|.++|+.... +.++..|..++......|+.+.|+.+++++++..|+ ....+......-...|..+.+.++.
T Consensus 485 d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~ 564 (679)
T 4e6h_A 485 DTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLE 564 (679)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 48999999987754 457788999999888999999999999999999883 4456777788888899999999999
Q ss_pred HHHHHC
Q 037236 800 QRMKER 805 (953)
Q Consensus 800 ~~m~~~ 805 (953)
+++.+.
T Consensus 565 ~R~~~~ 570 (679)
T 4e6h_A 565 KRFFEK 570 (679)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999874
No 81
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.10 E-value=1.8e-08 Score=110.60 Aligned_cols=194 Identities=12% Similarity=0.070 Sum_probs=142.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHhhhcCC----------C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--C--CHH
Q 037236 611 ACSIIDMYAKCGCLEQSRRVFDRLKD----------K-DVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHK--P--DTF 675 (953)
Q Consensus 611 ~~~li~~y~~~g~~~~A~~~~~~~~~----------~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--P--~~~ 675 (953)
...+...|...|++++|...+++... + ....+..+...+...|++++|...+++..+.... | ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 45677788888999998888886641 1 2345667788899999999999999998874221 1 235
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHH-----HHHHHHhhcCCHHHHHHHHHhCCCC-CC-----hhH
Q 037236 676 TFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYA-----CVVDMLGRAGKLDDAFKLIIEMPEE-AD-----AGI 744 (953)
Q Consensus 676 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-----~lv~~l~~~g~~~eA~~~~~~~~~~-~~-----~~~ 744 (953)
++..+...+...|++++|..++++......-......+. .++..+...|++++|...+++.... |. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 677888889999999999999999865432211111222 2345577999999999999988642 21 225
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCCCC------cchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 745 WSSLLRSCRTYGALKMGEKVAKTLLELEPDK------AENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 745 ~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~------~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
+..+...+...|+++.|...++++++..+.. ...+..++.+|...|++++|...++....
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 6777888889999999999999998874432 24778889999999999999997766543
No 82
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.09 E-value=3.4e-09 Score=109.86 Aligned_cols=84 Identities=11% Similarity=0.145 Sum_probs=68.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCCCC---cchHHHHHHHHHhc----------CCchHHHHHHHHHHHCCCccCC
Q 037236 745 WSSLLRSCRTYGALKMGEKVAKTLLELEPDK---AENYVLVSNIYAGS----------EKWDDVRMMRQRMKERGLQKEA 811 (953)
Q Consensus 745 ~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~---~~~~~~l~~~y~~~----------g~~~~a~~~~~~m~~~~~~~~~ 811 (953)
+..+...+...|+++.|...++++++..|++ +.++..++.+|... |++++|...++.+.+..
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~----- 225 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF----- 225 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC-----
Confidence 3566778899999999999999999999984 45889999999977 99999999988776532
Q ss_pred ceeEEEeCCEEEEEeeCCCCCccHHHHHHHHHHHHHHHHh
Q 037236 812 GCSWIELGGNIHSFVVGDNMHPEWEEIRGMWGRLEEQISK 851 (953)
Q Consensus 812 ~~s~i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~~~~~~ 851 (953)
..+|...+....+.++...+.+
T Consensus 226 ------------------p~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 226 ------------------PDSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp ------------------TTCTHHHHHHHHHHHHHHHHHH
T ss_pred ------------------CCChHHHHHHHHHHHHHHHHHH
Confidence 2467777788888887777654
No 83
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.08 E-value=1.6e-10 Score=108.20 Aligned_cols=140 Identities=9% Similarity=-0.021 Sum_probs=102.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcC
Q 037236 647 GGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAG 724 (953)
Q Consensus 647 ~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g 724 (953)
..+...|++++|++.+++... ..| +...+..+...|...|++++|++.|++.++ +.|+ ...|..+..+|.+.|
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN---VQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcC
Confidence 344556667777777776655 344 344566677777777777777777777765 4555 666777777777777
Q ss_pred CHHHHHHHHHhCCC-CC-ChhHHHHHHHHHHhcCChhHHHH-HHHHHhccCCCCcchHHHHHHHHHhcCC
Q 037236 725 KLDDAFKLIIEMPE-EA-DAGIWSSLLRSCRTYGALKMGEK-VAKTLLELEPDKAENYVLVSNIYAGSEK 791 (953)
Q Consensus 725 ~~~eA~~~~~~~~~-~~-~~~~~~~ll~~~~~~g~~~~a~~-~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 791 (953)
++++|+..+++... .| ++.+|..+...+...|+.+.+.+ .++++++++|+++.+|.+.+.++...|+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 77777777776543 34 56788888888888998876555 4699999999999999999999998885
No 84
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.05 E-value=4.7e-09 Score=115.53 Aligned_cols=219 Identities=12% Similarity=0.038 Sum_probs=146.9
Q ss_pred ccccchHHHHHHHHHHHHcCCC-C----CccHHHHHHHHHHhcCCHHHHHHHhhhcC-----CC-----CHHHHHHHHHH
Q 037236 584 SQLSALRLGKETHCYALKAILT-N----DAFVACSIIDMYAKCGCLEQSRRVFDRLK-----DK-----DVTSWNAIIGG 648 (953)
Q Consensus 584 ~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~-----~~~~~~~li~~ 648 (953)
...|+++.|...+..+.+.... + ....+..+...|...|++++|...+.+.. .+ ...+++.+...
T Consensus 112 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 191 (378)
T 3q15_A 112 FDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGN 191 (378)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHH
Confidence 3445555555555555432110 1 23456677888888888888887777654 11 13467788888
Q ss_pred HHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC--CCCC-hhHHHHHHHHH
Q 037236 649 HGIHGYGKEAIELFEKMLAL----GHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHA--VKPK-LEHYACVVDML 720 (953)
Q Consensus 649 ~~~~g~~~~A~~l~~~m~~~----g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~~p~-~~~~~~lv~~l 720 (953)
|...|++++|++.|++.++. +-.+ ...++..+..++...|++++|..+|++..+... ..|. ...+..+..+|
T Consensus 192 y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 271 (378)
T 3q15_A 192 YDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTL 271 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHH
Confidence 88999999999988887763 1111 234677788888899999999999888865221 2233 56677888889
Q ss_pred hhcCCHHHHHHHHHhCCC------CCC-hhHHHHHHHHHHhcCC---hhHHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 037236 721 GRAGKLDDAFKLIIEMPE------EAD-AGIWSSLLRSCRTYGA---LKMGEKVAKTLLELEPDKAENYVLVSNIYAGSE 790 (953)
Q Consensus 721 ~~~g~~~eA~~~~~~~~~------~~~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g 790 (953)
.+.|++++|.+.+++... .|. ...+..+...+...|+ ++.|...+++ ....|+....+..++.+|...|
T Consensus 272 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~-~~~~~~~~~~~~~la~~y~~~g 350 (378)
T 3q15_A 272 CKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK-KNLHAYIEACARSAAAVFESSC 350 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHCC
Confidence 999999999888876532 122 2344555555666677 6666666655 2233455667788999999999
Q ss_pred CchHHHHHHHHHH
Q 037236 791 KWDDVRMMRQRMK 803 (953)
Q Consensus 791 ~~~~a~~~~~~m~ 803 (953)
++++|...+++..
T Consensus 351 ~~~~A~~~~~~al 363 (378)
T 3q15_A 351 HFEQAAAFYRKVL 363 (378)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999998777664
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.04 E-value=4.2e-09 Score=111.10 Aligned_cols=184 Identities=8% Similarity=0.013 Sum_probs=131.6
Q ss_pred HHHHHhcCCHHHHHHHhhhcCC-------C--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---C----HHHHH
Q 037236 615 IDMYAKCGCLEQSRRVFDRLKD-------K--DVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP---D----TFTFV 678 (953)
Q Consensus 615 i~~y~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P---~----~~t~~ 678 (953)
+..|...|++++|...|.+... + ...+|+.+...|...|++++|+..|++.++. .| + ..++.
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~~~~g~~~~~a~~~~ 121 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI--FTHRGQFRRGANFKF 121 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--HHHcCCHHHHHHHHH
Confidence 3456677777777777776541 1 1457888899999999999999999988763 23 1 35788
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CC---Ch-----hH
Q 037236 679 GILMACNHA-GLVENGLKYFSQMQKLHAVKPK----LEHYACVVDMLGRAGKLDDAFKLIIEMPE-EA---DA-----GI 744 (953)
Q Consensus 679 ~ll~a~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~---~~-----~~ 744 (953)
.+..+|... |++++|+..|++..+...-..+ ...+..+..+|.+.|++++|++.+++... .| .. ..
T Consensus 122 ~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 201 (292)
T 1qqe_A 122 ELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDY 201 (292)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 888999996 9999999999998764321111 35678889999999999999999987643 22 21 15
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCCCCcch-----HHHHHHHHH--hcCCchHHHHHHH
Q 037236 745 WSSLLRSCRTYGALKMGEKVAKTLLELEPDKAEN-----YVLVSNIYA--GSEKWDDVRMMRQ 800 (953)
Q Consensus 745 ~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~-----~~~l~~~y~--~~g~~~~a~~~~~ 800 (953)
|..++..+...|+++.|...++++++++|+.... +..+...|. ..+++++|.+.++
T Consensus 202 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~ 264 (292)
T 1qqe_A 202 FLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFD 264 (292)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Confidence 6777778889999999999999999999987654 344556664 4567888777664
No 86
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.03 E-value=2.4e-08 Score=109.77 Aligned_cols=226 Identities=11% Similarity=0.077 Sum_probs=159.7
Q ss_pred HHHHhcCChhHHHHHHHhccc-----CC----cccHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CChhhHHHHHHHhc
Q 037236 515 SLYMHCEKSSSARVLFDEMED-----KS----LVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQ-PCEISIVSILSACS 584 (953)
Q Consensus 515 ~~y~~~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~ 584 (953)
..+...|++++|...|++..+ ++ ..++..+...|...|++++|+..+++..+.... ++
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~------------ 176 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPL------------ 176 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTT------------
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCC------------
Confidence 345566667777666665532 11 234555666666666666666666665442100 00
Q ss_pred cccchHHHHHHHHHHHHcCCC-CCccHHHHHHHHHHhcCCHHHHHHHhhhcCC-----CC----HHHHHHHHHHHHhcCC
Q 037236 585 QLSALRLGKETHCYALKAILT-NDAFVACSIIDMYAKCGCLEQSRRVFDRLKD-----KD----VTSWNAIIGGHGIHGY 654 (953)
Q Consensus 585 ~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~ 654 (953)
.. ....+++.+...|...|++++|...|++... ++ ..+++.+...|...|+
T Consensus 177 -------------------~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~ 237 (378)
T 3q15_A 177 -------------------YSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGD 237 (378)
T ss_dssp -------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred -------------------chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 00 0234566788888899999999888887652 22 3478888999999999
Q ss_pred hHHHHHHHHHHHHCC---CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC---hhHHHHHHHHHhhcCC--
Q 037236 655 GKEAIELFEKMLALG---HKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK---LEHYACVVDMLGRAGK-- 725 (953)
Q Consensus 655 ~~~A~~l~~~m~~~g---~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~lv~~l~~~g~-- 725 (953)
+++|++.|++.++.. ..| ...++..+..++...|++++|..++++..+...-.++ ...+..+...|...|+
T Consensus 238 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~ 317 (378)
T 3q15_A 238 DQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDER 317 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHH
T ss_pred HHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHH
Confidence 999999999988710 133 3567888999999999999999999999875443222 4456777778888888
Q ss_pred -HHHHHHHHHhCCCCCC-hhHHHHHHHHHHhcCChhHHHHHHHHHhcc
Q 037236 726 -LDDAFKLIIEMPEEAD-AGIWSSLLRSCRTYGALKMGEKVAKTLLEL 771 (953)
Q Consensus 726 -~~eA~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l 771 (953)
+++|++.+++....|+ ...+..+...+...|+++.|...+++++++
T Consensus 318 ~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 318 KIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 9999999998654333 346678888899999999999999997754
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.99 E-value=2.2e-08 Score=105.51 Aligned_cols=215 Identities=11% Similarity=-0.064 Sum_probs=139.5
Q ss_pred ChhHHHHHHHhcccCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHH
Q 037236 522 KSSSARVLFDEMEDKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALK 601 (953)
Q Consensus 522 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 601 (953)
++++|...|++. ...|...|++++|++.|.+..+.... .++...
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~---------------~~~~~~---------- 75 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKK---------------AGNEDE---------- 75 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHH---------------TTCHHH----------
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHH---------------hCCHHH----------
Confidence 366676666554 44567778888888777766542100 000000
Q ss_pred cCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCC-----CC----HHHHHHHHHHHHhc-CChHHHHHHHHHHHHCCCC
Q 037236 602 AILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKD-----KD----VTSWNAIIGGHGIH-GYGKEAIELFEKMLALGHK 671 (953)
Q Consensus 602 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~ 671 (953)
...+++.+..+|.+.|++++|...|++... .+ ..+|+.+...|... |++++|+..|++.++ +.
T Consensus 76 -----~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~--~~ 148 (292)
T 1qqe_A 76 -----AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGE--WY 148 (292)
T ss_dssp -----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HH
T ss_pred -----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH--HH
Confidence 123455566666667777777666665541 11 34677888888886 999999999998887 33
Q ss_pred CC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCh-----hHHHHHHHHHhhcCCHHHHHHHHHhCCC-
Q 037236 672 PD-------TFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKL-----EHYACVVDMLGRAGKLDDAFKLIIEMPE- 738 (953)
Q Consensus 672 P~-------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~~~~lv~~l~~~g~~~eA~~~~~~~~~- 738 (953)
|+ ..++..+...+...|++++|+.+|++..+...-.+.. ..|..+..++...|++++|+..+++...
T Consensus 149 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 228 (292)
T 1qqe_A 149 AQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (292)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 31 3467888889999999999999999887632222222 1467778888899999999999988754
Q ss_pred CCCh------hHHHHHHHHHH--hcCChhHHHHHHHHHhccCCCCcchH
Q 037236 739 EADA------GIWSSLLRSCR--TYGALKMGEKVAKTLLELEPDKAENY 779 (953)
Q Consensus 739 ~~~~------~~~~~ll~~~~--~~g~~~~a~~~~~~~~~l~p~~~~~~ 779 (953)
.|+. ..+..++.++. ..++++.|...++++.+++|.+....
T Consensus 229 ~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~ 277 (292)
T 1qqe_A 229 DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITIL 277 (292)
T ss_dssp ---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHH
Confidence 3432 13445555554 34568888888888888888654433
No 88
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.98 E-value=4.5e-09 Score=109.98 Aligned_cols=221 Identities=14% Similarity=0.123 Sum_probs=157.0
Q ss_pred ccccchHHHHHHHHHHHHc-------CCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCC-----------CCHHHHHHH
Q 037236 584 SQLSALRLGKETHCYALKA-------ILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKD-----------KDVTSWNAI 645 (953)
Q Consensus 584 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----------~~~~~~~~l 645 (953)
...|+++.|...+....+. ..+....++..+...|...|++++|...|+++.. ....+|..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3456677777766655542 2223466788899999999999999999987651 134578889
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc-----CCCCC-hhH
Q 037236 646 IGGHGIHGYGKEAIELFEKMLAL------GHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLH-----AVKPK-LEH 712 (953)
Q Consensus 646 i~~~~~~g~~~~A~~l~~~m~~~------g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p~-~~~ 712 (953)
...|...|++++|++.|++.++. .-.| ...++..+...+...|++++|..+|+++.+.. +-.|. ...
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998874 1134 45678889999999999999999999987641 11343 567
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCCC----------CC-ChhHHHHHHHHHHhcCC------hhHHHHHHHHHhccCCCC
Q 037236 713 YACVVDMLGRAGKLDDAFKLIIEMPE----------EA-DAGIWSSLLRSCRTYGA------LKMGEKVAKTLLELEPDK 775 (953)
Q Consensus 713 ~~~lv~~l~~~g~~~eA~~~~~~~~~----------~~-~~~~~~~ll~~~~~~g~------~~~a~~~~~~~~~l~p~~ 775 (953)
+..+..+|.+.|++++|.+.++++.. .+ ....|..+.......+. +..+...++.+....|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 88899999999999999999876542 12 23455555444444333 333333344434445677
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 776 AENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 776 ~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
+.++..++.+|...|++++|...+++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 78899999999999999999998876643
No 89
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.97 E-value=7.4e-09 Score=122.94 Aligned_cols=167 Identities=10% Similarity=-0.039 Sum_probs=116.1
Q ss_pred HhcCCHHHHHHHhhhcC-----------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHh
Q 037236 619 AKCGCLEQSRRVFDRLK-----------DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNH 686 (953)
Q Consensus 619 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~ 686 (953)
...|++++|.+.|++.. +.+...|..+...|...|++++|++.|+++++ ..| +...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAE--RVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc--cCcchHHHHHHHHHHHHH
Confidence 45666777766666554 34556677777777777777777777777777 355 55667777777777
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHH
Q 037236 687 AGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEK 763 (953)
Q Consensus 687 ~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~ 763 (953)
.|++++|...|+++.+ +.|+ ...|..+..+|.+.|++++ ++.+++... +.+...|..+..++...|++++|..
T Consensus 480 ~g~~~~A~~~~~~al~---l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLD---TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHH---HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777777765 4454 5667777777777777777 777766543 3356677777777777788888888
Q ss_pred HHHHHhccCCCCcchHHHHHHHHHhcCC
Q 037236 764 VAKTLLELEPDKAENYVLVSNIYAGSEK 791 (953)
Q Consensus 764 ~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 791 (953)
.++++++++|+++.++..++.+|...|+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 8888888888777777777777766655
No 90
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.94 E-value=2.6e-08 Score=100.41 Aligned_cols=179 Identities=13% Similarity=0.034 Sum_probs=109.3
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHhhhcC--CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHH
Q 037236 609 FVACSIIDMYAKCGCLEQSRRVFDRLK--DKD----VTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDT----FTFV 678 (953)
Q Consensus 609 ~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~----~t~~ 678 (953)
..+..+...+.+.|++++|...|+++. .|+ ...+..+..+|...|++++|+..|+++++. .|+. ..+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHH
Confidence 344455566666777777777777655 122 235566666677777777777777776663 4432 1333
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCCC
Q 037236 679 GILMACNH------------------AGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPEE 739 (953)
Q Consensus 679 ~ll~a~~~------------------~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~ 739 (953)
.+..++.. .|++++|...|+.+++.+ |+ ...+..+. +.+.+.+..
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---P~~~~a~~a~~----~l~~~~~~~--------- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY---PNSQYTTDATK----RLVFLKDRL--------- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC---TTCTTHHHHHH----HHHHHHHHH---------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC---cCChhHHHHHH----HHHHHHHHH---------
Confidence 44444433 344555555555554422 22 11111110 000000000
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc---chHHHHHHHHHhcCCchHHHHHHHHHHHCCC
Q 037236 740 ADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKA---ENYVLVSNIYAGSEKWDDVRMMRQRMKERGL 807 (953)
Q Consensus 740 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 807 (953)
......+...+...|+++.|...++++++..|+++ .++..++.+|...|++++|.+.++.+...+.
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 00113455667889999999999999999999986 5799999999999999999999998887654
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.92 E-value=1.5e-08 Score=104.91 Aligned_cols=186 Identities=9% Similarity=0.018 Sum_probs=143.3
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHhhhcC--CC-C---HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---C-HHH
Q 037236 607 DAFVACSIIDMYAKCGCLEQSRRVFDRLK--DK-D---VTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP---D-TFT 676 (953)
Q Consensus 607 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~-~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P---~-~~t 676 (953)
+...+..+...+.+.|++++|...|+++. .| + ...|..+..+|...|++++|+..|++.++. .| + ...
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 91 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI--YQIDPRVPQA 91 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH--CCCCchhHHH
Confidence 45566677888889999999999999887 23 3 567888999999999999999999999984 44 2 355
Q ss_pred HHHHHHHHHh--------cCCHHHHHHHHHHHHHhcCCCCChh-HH--------------HHHHHHHhhcCCHHHHHHHH
Q 037236 677 FVGILMACNH--------AGLVENGLKYFSQMQKLHAVKPKLE-HY--------------ACVVDMLGRAGKLDDAFKLI 733 (953)
Q Consensus 677 ~~~ll~a~~~--------~g~~~~a~~~~~~m~~~~~~~p~~~-~~--------------~~lv~~l~~~g~~~eA~~~~ 733 (953)
+..+..++.. .|++++|+..|+++++.++-.|... .. ..+...|.+.|++++|+..+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 7777888888 9999999999999988554333321 11 55688899999999999999
Q ss_pred HhCCC-CCC----hhHHHHHHHHHHhc----------CChhHHHHHHHHHhccCCCCcc---hHHHHHHHHHhcCCchH
Q 037236 734 IEMPE-EAD----AGIWSSLLRSCRTY----------GALKMGEKVAKTLLELEPDKAE---NYVLVSNIYAGSEKWDD 794 (953)
Q Consensus 734 ~~~~~-~~~----~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~l~p~~~~---~~~~l~~~y~~~g~~~~ 794 (953)
+++.. .|+ ...|..+..++... |+++.|...++++++..|+++. ++..+..++...|++++
T Consensus 172 ~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 172 EAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhh
Confidence 87743 343 34677777777765 8899999999999999999864 44556666665555443
No 92
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.90 E-value=1.5e-08 Score=106.51 Aligned_cols=171 Identities=9% Similarity=-0.041 Sum_probs=138.2
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 037236 625 EQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKL 703 (953)
Q Consensus 625 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 703 (953)
+.....+....+.+...+..+...+...|++++|+..|++.++ ..| +...+..+..++...|++++|...++++..
T Consensus 103 ~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~- 179 (287)
T 3qou_A 103 EAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL- 179 (287)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG-
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch-
Confidence 3344445555555666777888889999999999999999998 577 667888899999999999999999998854
Q ss_pred cCCCCChhHHHH-HHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC--cch
Q 037236 704 HAVKPKLEHYAC-VVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDK--AEN 778 (953)
Q Consensus 704 ~~~~p~~~~~~~-lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~--~~~ 778 (953)
..|+...... ..-.+.+.|+.++|.+.+++... +.+...+..+...+...|+++.|...++++++.+|++ +.+
T Consensus 180 --~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 180 --QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp --GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred --hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 4566433322 23346778888889888877653 4567899999999999999999999999999999998 889
Q ss_pred HHHHHHHHHhcCCchHHHHHHH
Q 037236 779 YVLVSNIYAGSEKWDDVRMMRQ 800 (953)
Q Consensus 779 ~~~l~~~y~~~g~~~~a~~~~~ 800 (953)
+..|+.+|...|+.++|...++
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r 279 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYR 279 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHH
Confidence 9999999999999999988544
No 93
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.90 E-value=2.6e-07 Score=95.18 Aligned_cols=174 Identities=9% Similarity=-0.013 Sum_probs=123.0
Q ss_pred HHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037236 627 SRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQK 702 (953)
Q Consensus 627 A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 702 (953)
|...|++.. .++..++..+..++...|++++|++++.+.+..|..+ +...+..++..+.+.|+++.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 556666554 3455566677778888888888888888877754323 445677777888888888888888888865
Q ss_pred hcCCCC-----ChhHHHHHHHH--HhhcC--CHHHHHHHHHhCCCC-CChhHHHHHHHHHHhcCChhHHHHHHHHHhcc-
Q 037236 703 LHAVKP-----KLEHYACVVDM--LGRAG--KLDDAFKLIIEMPEE-ADAGIWSSLLRSCRTYGALKMGEKVAKTLLEL- 771 (953)
Q Consensus 703 ~~~~~p-----~~~~~~~lv~~--l~~~g--~~~eA~~~~~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l- 771 (953)
..| +-.....|..+ ....| ++.+|..+|+++... |+...-..|++++...|++++|+..++.+.++
T Consensus 165 ---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 ---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp ---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred ---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 455 23333444433 33334 888888888887653 44233334444677889999999999988876
Q ss_pred ---------CCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHC
Q 037236 772 ---------EPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKER 805 (953)
Q Consensus 772 ---------~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 805 (953)
+|+|+.++..++.++...|+ +|.+++.++++.
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 48888888888888888887 888888888874
No 94
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.88 E-value=2.3e-08 Score=99.34 Aligned_cols=156 Identities=7% Similarity=-0.018 Sum_probs=122.8
Q ss_pred HHHHHHhcCCHHHHHHHhhhcCC--C-CHHHHHH----------------HHHHHHhcCChHHHHHHHHHHHHCCCCC-C
Q 037236 614 IIDMYAKCGCLEQSRRVFDRLKD--K-DVTSWNA----------------IIGGHGIHGYGKEAIELFEKMLALGHKP-D 673 (953)
Q Consensus 614 li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~----------------li~~~~~~g~~~~A~~l~~~m~~~g~~P-~ 673 (953)
....+.+.|++++|...|++... | +...|.. +...|...|++++|+..|++.++ ..| +
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~ 87 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ--KAPNN 87 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCC
Confidence 44566678888888888887762 2 3445666 88899999999999999999999 578 6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCC--HHHHHHHHHhCCCCCCh--hHHHHH
Q 037236 674 TFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGK--LDDAFKLIIEMPEEADA--GIWSSL 748 (953)
Q Consensus 674 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~--~~eA~~~~~~~~~~~~~--~~~~~l 748 (953)
...+..+..++...|++++|...|+++++ +.|+ ...|..+..+|...|. .+++...++... .|++ ..|..+
T Consensus 88 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~ 163 (208)
T 3urz_A 88 VDCLEACAEMQVCRGQEKDALRMYEKILQ---LEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS-SPTKMQYARYRD 163 (208)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-CCCchhHHHHHH
Confidence 78899999999999999999999999987 5676 7788889888876654 455667777665 3443 345556
Q ss_pred HHHHHhcCChhHHHHHHHHHhccCCCC
Q 037236 749 LRSCRTYGALKMGEKVAKTLLELEPDK 775 (953)
Q Consensus 749 l~~~~~~g~~~~a~~~~~~~~~l~p~~ 775 (953)
..++...|+++.|+..+++++++.|++
T Consensus 164 g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 164 GLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 667778899999999999999999964
No 95
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.86 E-value=3.9e-08 Score=114.68 Aligned_cols=158 Identities=13% Similarity=0.052 Sum_probs=125.7
Q ss_pred cCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 037236 621 CGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKY 696 (953)
Q Consensus 621 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~ 696 (953)
.|++++|...|++.. +.+...|..+...|...|++++|++.|++..+ ..| +..++..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 477888999888876 34678899999999999999999999999998 567 577889999999999999999999
Q ss_pred HHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhc---CChhHHHHHHHHHhc
Q 037236 697 FSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTY---GALKMGEKVAKTLLE 770 (953)
Q Consensus 697 ~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~ 770 (953)
|++..+ +.|+ ...+..+..+|.+.|++++|.+.+++... +.+...|..+...+... |+.+.|...++++++
T Consensus 80 ~~~al~---~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASD---AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHh---cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 999977 3455 77889999999999999999999988753 34677899999999999 999999999999999
Q ss_pred cCCCCcchHHHHH
Q 037236 771 LEPDKAENYVLVS 783 (953)
Q Consensus 771 l~p~~~~~~~~l~ 783 (953)
.+|++..++..++
T Consensus 157 ~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 QGVGAVEPFAFLS 169 (568)
T ss_dssp HTCCCSCHHHHTT
T ss_pred cCCcccChHHHhC
Confidence 9999999888777
No 96
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.86 E-value=4.1e-09 Score=98.49 Aligned_cols=122 Identities=12% Similarity=0.008 Sum_probs=101.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcC
Q 037236 680 ILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYG 756 (953)
Q Consensus 680 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g 756 (953)
|...+...|++++|+..++.... ..|+ ...+..+..+|.+.|++++|++.+++... +.++.+|..+...+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 44556678899999999887743 4555 55567789999999999999999998754 446889999999999999
Q ss_pred ChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHH-HHHHHH
Q 037236 757 ALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMM-RQRMKE 804 (953)
Q Consensus 757 ~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~-~~~m~~ 804 (953)
+++.|...++++++++|+++.++..++.+|...|++++|.+. .++..+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988764 354443
No 97
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.85 E-value=4.3e-07 Score=99.48 Aligned_cols=126 Identities=13% Similarity=0.134 Sum_probs=61.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHhhhcC----CC-CHHHHHH-----HHHHHHhcCChHHHHHHHHHHHHCCCCC---CHHHH
Q 037236 611 ACSIIDMYAKCGCLEQSRRVFDRLK----DK-DVTSWNA-----IIGGHGIHGYGKEAIELFEKMLALGHKP---DTFTF 677 (953)
Q Consensus 611 ~~~li~~y~~~g~~~~A~~~~~~~~----~~-~~~~~~~-----li~~~~~~g~~~~A~~l~~~m~~~g~~P---~~~t~ 677 (953)
+..+...+...|++++|...+++.. .+ +...|.. .+..+...|+.++|...+++.......+ ....+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 4445555555666666665555432 11 1111211 2222455666666666666554422111 11234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhc---CCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 037236 678 VGILMACNHAGLVENGLKYFSQMQKLH---AVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEM 736 (953)
Q Consensus 678 ~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~ 736 (953)
..+..++...|++++|...++...... +..++ ...+..+..++.+.|+.++|.+.+++.
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a 319 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 319 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 455556666666666666666554321 11112 234455556666666666666666554
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.84 E-value=4.6e-08 Score=116.09 Aligned_cols=169 Identities=11% Similarity=0.071 Sum_probs=138.0
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 037236 607 DAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILM 682 (953)
Q Consensus 607 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~ 682 (953)
+...+..+...|.+.|++++|...|++.. ..+...|..+...|...|++++|++.|++.++ ..| +...+..+..
T Consensus 432 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~~~~~lg~ 509 (681)
T 2pzi_A 432 SVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLD--TFPGELAPKLALAA 509 (681)
T ss_dssp CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCSHHHHHHHH
T ss_pred chhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHH
Confidence 56778888899999999999999999877 45788999999999999999999999999999 577 5678899999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCC-hhHHHHHHHHHHhcCC--
Q 037236 683 ACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE-EAD-AGIWSSLLRSCRTYGA-- 757 (953)
Q Consensus 683 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~~-~~~~~~ll~~~~~~g~-- 757 (953)
++...|++++ +..|+++++ +.|+ ...|..+..+|.+.|++++|++.+++... .|+ ...|..+..++...|+
T Consensus 510 ~~~~~g~~~~-~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~ 585 (681)
T 2pzi_A 510 TAELAGNTDE-HKFYQTVWS---TNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTS 585 (681)
T ss_dssp HHHHHTCCCT-TCHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC------
T ss_pred HHHHcCChHH-HHHHHHHHH---hCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCC
Confidence 9999999999 999999977 5566 77899999999999999999999999875 455 5678788777766555
Q ss_pred ---hhHHHHHHHHHhccCCCCcchHHH
Q 037236 758 ---LKMGEKVAKTLLELEPDKAENYVL 781 (953)
Q Consensus 758 ---~~~a~~~~~~~~~l~p~~~~~~~~ 781 (953)
.+...++.+.+.++.++++..+..
T Consensus 586 ~~~~~~~~~A~~~l~~~~~~~~~~~~l 612 (681)
T 2pzi_A 586 EVTEEQIRDAARRVEALPPTEPRVLQI 612 (681)
T ss_dssp -CCHHHHHHHHHHHHTSCTTSTTHHHH
T ss_pred CCCHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 455666666666676666655433
No 99
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.83 E-value=5e-08 Score=88.62 Aligned_cols=126 Identities=23% Similarity=0.372 Sum_probs=67.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHH
Q 037236 641 SWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDM 719 (953)
Q Consensus 641 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~ 719 (953)
.|..+...+...|++++|+.+|+++.+. .| +..++..+...+...|++++|..+|+++.+. .|+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~---------- 67 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPR---------- 67 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTT----------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH---CCC----------
Confidence 3555666666666666666666666653 23 4455555666666666666666666666442 122
Q ss_pred HhhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHH
Q 037236 720 LGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMR 799 (953)
Q Consensus 720 l~~~g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 799 (953)
+...|..+...+...|+++.|...++++++..|+++..+..++.+|...|++++|...+
T Consensus 68 ---------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 126 (136)
T 2fo7_A 68 ---------------------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 126 (136)
T ss_dssp ---------------------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred ---------------------chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHH
Confidence 22333334444444444444444444444455555555555555555555555555554
Q ss_pred HHH
Q 037236 800 QRM 802 (953)
Q Consensus 800 ~~m 802 (953)
+.+
T Consensus 127 ~~~ 129 (136)
T 2fo7_A 127 QKA 129 (136)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 100
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.80 E-value=5.6e-08 Score=88.25 Aligned_cols=95 Identities=20% Similarity=0.261 Sum_probs=77.4
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 037236 712 HYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGS 789 (953)
Q Consensus 712 ~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 789 (953)
.|..++..+.+.|++++|.++++++.. +.+...|..+...+...|+++.|...++++++..|+++..+..++.+|...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 455566677777777777777766532 345677888888888889999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHCC
Q 037236 790 EKWDDVRMMRQRMKERG 806 (953)
Q Consensus 790 g~~~~a~~~~~~m~~~~ 806 (953)
|++++|.+.++.+.+..
T Consensus 83 ~~~~~A~~~~~~~~~~~ 99 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD 99 (136)
T ss_dssp TCHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHhC
Confidence 99999999988876643
No 101
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.80 E-value=2.6e-08 Score=104.02 Aligned_cols=223 Identities=10% Similarity=0.011 Sum_probs=156.5
Q ss_pred hcCChhHHHHHHHHHHHc-------CCCCChhhHHHHHHHhccccchHHHHHHHHHHHHc------CC-CCCccHHHHHH
Q 037236 550 QNKLPVEAIVLFRRMFSI-------GVQPCEISIVSILSACSQLSALRLGKETHCYALKA------IL-TNDAFVACSII 615 (953)
Q Consensus 550 ~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~li 615 (953)
..|++++|+.+|++..+. .......++..+...+...|++++|...+..+.+. +- .....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 356666666666665541 21223456677778889999999999999888764 22 22456788899
Q ss_pred HHHHhcCCHHHHHHHhhhcCC----------C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCC-CHHHH
Q 037236 616 DMYAKCGCLEQSRRVFDRLKD----------K-DVTSWNAIIGGHGIHGYGKEAIELFEKMLAL------GHKP-DTFTF 677 (953)
Q Consensus 616 ~~y~~~g~~~~A~~~~~~~~~----------~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~P-~~~t~ 677 (953)
..|...|++++|...|.+... | ...+|..+...|...|++++|+..|+++.+. +-.| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 999999999999999998751 1 3457888999999999999999999999884 1144 35678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhc------CCCCC-hhHHHHHHHHHhhcC------CHHHHHHHHHhCCCC-C-Ch
Q 037236 678 VGILMACNHAGLVENGLKYFSQMQKLH------AVKPK-LEHYACVVDMLGRAG------KLDDAFKLIIEMPEE-A-DA 742 (953)
Q Consensus 678 ~~ll~a~~~~g~~~~a~~~~~~m~~~~------~~~p~-~~~~~~lv~~l~~~g------~~~eA~~~~~~~~~~-~-~~ 742 (953)
..+..++...|++++|..+++++.+.. ...|. ...+..+...+...+ .+.++...++..... | ..
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVN 252 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHH
Confidence 899999999999999999999997641 12333 333444444443333 355555555555432 2 35
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHhccC
Q 037236 743 GIWSSLLRSCRTYGALKMGEKVAKTLLELE 772 (953)
Q Consensus 743 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~ 772 (953)
.+|..+...+...|+++.|...+++++++.
T Consensus 253 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 253 TTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 578889999999999999999999998753
No 102
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.79 E-value=2.1e-08 Score=96.68 Aligned_cols=74 Identities=9% Similarity=0.042 Sum_probs=54.2
Q ss_pred HHHHHHhCCC-CC-ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC--cchHHHHHHHHHhcCCchHHHHHHHHH
Q 037236 729 AFKLIIEMPE-EA-DAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDK--AENYVLVSNIYAGSEKWDDVRMMRQRM 802 (953)
Q Consensus 729 A~~~~~~~~~-~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~--~~~~~~l~~~y~~~g~~~~a~~~~~~m 802 (953)
|++.+++... .| ++..|..+...+...|+++.|...++++++.+|+. +.++..++.+|...|+.++|...+++.
T Consensus 93 a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 93 ELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 4444444322 23 46777777788888888888888888888888865 558888888999999998888866543
No 103
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.79 E-value=5.3e-07 Score=94.07 Aligned_cols=190 Identities=13% Similarity=0.187 Sum_probs=137.3
Q ss_pred HHHHHHHHHHhcC--CHHHHHHHhhhcC---CCCHHHHHHHHHHH----Hhc---CChHHHHHHHHHHHHCCCCC-CHHH
Q 037236 610 VACSIIDMYAKCG--CLEQSRRVFDRLK---DKDVTSWNAIIGGH----GIH---GYGKEAIELFEKMLALGHKP-DTFT 676 (953)
Q Consensus 610 ~~~~li~~y~~~g--~~~~A~~~~~~~~---~~~~~~~~~li~~~----~~~---g~~~~A~~l~~~m~~~g~~P-~~~t 676 (953)
+++.-...+...| ++++++..++.+. +++..+|+.-...+ ... +++++++++++++++ ..| |..+
T Consensus 69 aWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~--~~pkny~a 146 (306)
T 3dra_A 69 IWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLS--SDPKNHHV 146 (306)
T ss_dssp HHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHH--HCTTCHHH
T ss_pred HHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHH--hCCCCHHH
Confidence 4444445555556 7777777777665 45566777655544 444 678888888888888 466 7777
Q ss_pred HHHHHHHHHhcCCHH--HHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCC------HHHHHHHHHhCCC--CCChhHH
Q 037236 677 FVGILMACNHAGLVE--NGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGK------LDDAFKLIIEMPE--EADAGIW 745 (953)
Q Consensus 677 ~~~ll~a~~~~g~~~--~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~------~~eA~~~~~~~~~--~~~~~~~ 745 (953)
|..-...+.+.|.++ +++++++.+++ ..|. ...|+.-..++.+.|+ ++++++.++++.. +.|...|
T Consensus 147 W~~R~~vl~~l~~~~~~~EL~~~~~~i~---~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW 223 (306)
T 3dra_A 147 WSYRKWLVDTFDLHNDAKELSFVDKVID---TDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTW 223 (306)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHHhcccChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHH
Confidence 777777777788877 88888888876 3343 4556555556666665 7888888876643 4578888
Q ss_pred HHHHHHHHhcCC-hhHHHHHHHHHhccC---CCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 746 SSLLRSCRTYGA-LKMGEKVAKTLLELE---PDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 746 ~~ll~~~~~~g~-~~~a~~~~~~~~~l~---p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
+.+...+...|+ .+.....++++++++ |.++.++..++.+|.+.|+.++|.++.+.+.+
T Consensus 224 ~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 224 NYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 888888877776 455667888888776 77888888888899888898999888888765
No 104
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.78 E-value=2.9e-08 Score=89.42 Aligned_cols=113 Identities=11% Similarity=0.034 Sum_probs=81.7
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHH
Q 037236 670 HKPD-TFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIW 745 (953)
Q Consensus 670 ~~P~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~ 745 (953)
+.|+ ...+......+.+.|++++|+..|++.++ +.|+ ...|..+..+|.+.|++++|++.+++... +.++..|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK---RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 4553 34566666777777777777777777665 3444 56666677777777777777777766543 3456778
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHH
Q 037236 746 SSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNI 785 (953)
Q Consensus 746 ~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 785 (953)
..++.++...|+++.|...++++++++|+++.++..|+++
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 8888888888889999999999999999998888777765
No 105
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.78 E-value=3.5e-07 Score=94.25 Aligned_cols=240 Identities=9% Similarity=-0.020 Sum_probs=159.0
Q ss_pred HhcCChhHHHHHHHhcccCCcc-cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHH
Q 037236 518 MHCEKSSSARVLFDEMEDKSLV-SWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETH 596 (953)
Q Consensus 518 ~~~g~~~~A~~~f~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 596 (953)
.-.|.+..+..-...+...+.. .-.-+..+|...|++.... .-.|....+.. +..+...+ +...+
T Consensus 24 fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~-la~~~~~~----a~~~l 89 (310)
T 3mv2_B 24 YYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDL-YVQFLDTK----NIEEL 89 (310)
T ss_dssp HTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHH-HHHHHTTT----CCHHH
T ss_pred HHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHH-HHHHhccc----HHHHH
Confidence 3457777766655554432222 1222346677777665321 11232222222 22222222 44455
Q ss_pred HHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCC-----CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 037236 597 CYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKD-----KDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHK 671 (953)
Q Consensus 597 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 671 (953)
+.....+ .++......+..+|...|++++|.+++.+... .+...+-.++..+.+.|+.+.|.+.+++|.+ ..
T Consensus 90 ~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~~ 166 (310)
T 3mv2_B 90 ENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--AI 166 (310)
T ss_dssp HHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HS
T ss_pred HHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cC
Confidence 5555444 33455556788899999999999999998742 3566777888999999999999999999988 57
Q ss_pred C-----CHHHHHHHHHH--HHhcC--CHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC----
Q 037236 672 P-----DTFTFVGILMA--CNHAG--LVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPE---- 738 (953)
Q Consensus 672 P-----~~~t~~~ll~a--~~~~g--~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~---- 738 (953)
| +..+...|..+ ....| ++.+|..+|+++.+. .|+......+..++.+.|++++|.+.++.+..
T Consensus 167 ~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~ 243 (310)
T 3mv2_B 167 EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYS 243 (310)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 7 36666666666 33334 899999999999653 35433334445589999999999999876533
Q ss_pred --------CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchH
Q 037236 739 --------EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENY 779 (953)
Q Consensus 739 --------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~ 779 (953)
+.|+.+...++......|+ .|.+.++++.+.+|+++-..
T Consensus 244 ~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 244 VEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp TTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 2356667677666666786 88999999999999998654
No 106
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.78 E-value=3e-08 Score=89.27 Aligned_cols=100 Identities=10% Similarity=0.126 Sum_probs=91.1
Q ss_pred CCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHH
Q 037236 705 AVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVL 781 (953)
Q Consensus 705 ~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~ 781 (953)
-+.|+ ...+......|.+.|++++|++.|++... +.++.+|..+..++...|+++.|...++++++++|+++.+|..
T Consensus 7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 86 (126)
T 4gco_A 7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR 86 (126)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 36777 67788899999999999999999998753 4578899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHH
Q 037236 782 VSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 782 l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
++.+|...|++++|.+.+++..+
T Consensus 87 lg~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999998887765
No 107
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.76 E-value=3.1e-07 Score=91.40 Aligned_cols=171 Identities=9% Similarity=-0.053 Sum_probs=133.5
Q ss_pred HHHHhhhcC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHH
Q 037236 627 SRRVFDRLK-DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAG----LVENGLKYFSQMQ 701 (953)
Q Consensus 627 A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g----~~~~a~~~~~~m~ 701 (953)
|.+.|.+.. ..++..+..+...|...+++++|++.|++..+.| +...+..|...|.. + ++++|.++|+...
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 444444443 3467777778888888888888888888888754 55667777777777 6 8889999988885
Q ss_pred HhcCCCCChhHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCC----hhHHHHHHHHHHh----cCChhHHHHHHHHHh
Q 037236 702 KLHAVKPKLEHYACVVDMLGR----AGKLDDAFKLIIEMPEEAD----AGIWSSLLRSCRT----YGALKMGEKVAKTLL 769 (953)
Q Consensus 702 ~~~~~~p~~~~~~~lv~~l~~----~g~~~eA~~~~~~~~~~~~----~~~~~~ll~~~~~----~g~~~~a~~~~~~~~ 769 (953)
+ . -++..+..|..+|.. .+++++|++++++.....+ +..+..|...|.. .+|.+.|...++++.
T Consensus 81 ~-~---g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 E-A---GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp H-T---TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred H-C---CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 4 1 246677778888877 7899999999988776444 7888888888887 789999999999999
Q ss_pred ccCCCCcchHHHHHHHHHhc-C-----CchHHHHHHHHHHHCC
Q 037236 770 ELEPDKAENYVLVSNIYAGS-E-----KWDDVRMMRQRMKERG 806 (953)
Q Consensus 770 ~l~p~~~~~~~~l~~~y~~~-g-----~~~~a~~~~~~m~~~~ 806 (953)
++ |.++.++..|+.+|... | ++++|...+++..+.|
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 88 77888999999999864 3 8999999888877755
No 108
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.76 E-value=3.2e-08 Score=91.97 Aligned_cols=100 Identities=5% Similarity=-0.051 Sum_probs=84.5
Q ss_pred CCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHH
Q 037236 705 AVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVL 781 (953)
Q Consensus 705 ~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~ 781 (953)
.+.|+ ...+..+...+.+.|++++|++.|++... +.++..|..+..++...|+++.|...++++++++|+++.+|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 35565 56677777778888888888888877653 4467889999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHH
Q 037236 782 VSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 782 l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
++.+|...|++++|...+++..+
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999998877765
No 109
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.76 E-value=4.7e-08 Score=113.96 Aligned_cols=149 Identities=13% Similarity=0.070 Sum_probs=116.5
Q ss_pred cCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHH
Q 037236 652 HGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDA 729 (953)
Q Consensus 652 ~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA 729 (953)
.|++++|++.|++..+ ..| +...+..+...+...|++++|...|++..+ +.|+ ...+..+..+|.+.|++++|
T Consensus 2 ~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A 76 (568)
T 2vsy_A 2 TADGPRELLQLRAAVR--HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA---LHPGHPEAVARLGRVRWTQQRHAEA 76 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---TSTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 4789999999999988 467 578899999999999999999999999876 5666 78899999999999999999
Q ss_pred HHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhc---CCchHHHHHHHHHHH
Q 037236 730 FKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGS---EKWDDVRMMRQRMKE 804 (953)
Q Consensus 730 ~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~---g~~~~a~~~~~~m~~ 804 (953)
.+.+++... +.+...|..+...+...|++++|...++++++++|+++.++..++.+|... |++++|.+.+++..+
T Consensus 77 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 77 AVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 999988753 346789999999999999999999999999999999999999999999999 999999987766644
Q ss_pred C
Q 037236 805 R 805 (953)
Q Consensus 805 ~ 805 (953)
.
T Consensus 157 ~ 157 (568)
T 2vsy_A 157 Q 157 (568)
T ss_dssp H
T ss_pred c
Confidence 3
No 110
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.71 E-value=3.1e-08 Score=92.14 Aligned_cols=99 Identities=9% Similarity=0.032 Sum_probs=81.5
Q ss_pred CCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHH
Q 037236 706 VKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLV 782 (953)
Q Consensus 706 ~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l 782 (953)
+.|+ ...+..+...+.+.|++++|++.|++... +.++..|..+..++...|+++.|...++++++++|+++.++..+
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~l 95 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHA 95 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHH
Confidence 4554 55566677778888888888888876643 44678888888889999999999999999999999999999999
Q ss_pred HHHHHhcCCchHHHHHHHHHHH
Q 037236 783 SNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 783 ~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
+.+|...|++++|...++...+
T Consensus 96 g~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 96 AECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999998776654
No 111
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.70 E-value=3e-07 Score=91.19 Aligned_cols=159 Identities=11% Similarity=0.052 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHH----------------HHHHHHhcCCHHHHHHHHHHHHH
Q 037236 640 TSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVG----------------ILMACNHAGLVENGLKYFSQMQK 702 (953)
Q Consensus 640 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~----------------ll~a~~~~g~~~~a~~~~~~m~~ 702 (953)
..+-.....+...|++++|+..|++.++ ..| +...+.. +..++...|++++|+..|++.++
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIA--LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444556678899999999999999999 578 4456767 88899999999999999999987
Q ss_pred hcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCC--hhHHHHHHHHHhccCCCCcc
Q 037236 703 LHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGA--LKMGEKVAKTLLELEPDKAE 777 (953)
Q Consensus 703 ~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~--~~~a~~~~~~~~~l~p~~~~ 777 (953)
+.|+ ...+..+..+|...|++++|++.+++... +.++.+|..++..+...|+ .+.+...+++++...|. ..
T Consensus 83 ---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 158 (208)
T 3urz_A 83 ---KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QY 158 (208)
T ss_dssp ---HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HH
T ss_pred ---HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hH
Confidence 4565 78899999999999999999999998754 4467889999888866653 44556666666544332 22
Q ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 778 NYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 778 ~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
.+..++..+...|++++|...+++..+
T Consensus 159 a~~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 159 ARYRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 456678889999999999998877654
No 112
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.69 E-value=2.7e-06 Score=88.76 Aligned_cols=158 Identities=7% Similarity=0.058 Sum_probs=129.9
Q ss_pred CCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChH--HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC------
Q 037236 622 GCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGK--EAIELFEKMLALGHKP-DTFTFVGILMACNHAGL------ 689 (953)
Q Consensus 622 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~--~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~------ 689 (953)
++++++..+++.+. +++..+|+--.-.+...|.++ ++++.++++++. .| |...|..-.....+.|.
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhh
Confidence 77889999998876 678889998888888889888 999999999994 66 77788877777777776
Q ss_pred HHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHH-HHHHHHhCCC-----CCChhHHHHHHHHHHhcCChhHHH
Q 037236 690 VENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDD-AFKLIIEMPE-----EADAGIWSSLLRSCRTYGALKMGE 762 (953)
Q Consensus 690 ~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~e-A~~~~~~~~~-----~~~~~~~~~ll~~~~~~g~~~~a~ 762 (953)
+++++++++.++. ..|+ ...|+.+..++.+.|+..+ +.++.++... ..++..|..++..+...|+.+.|.
T Consensus 202 ~~eEl~~~~~aI~---~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 202 IDEELNYVKDKIV---KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHH---hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 8999999999887 4565 7788888888989888554 5567776543 346789999999999999999999
Q ss_pred HHHHHHhc-cCCCCcchHHHHHH
Q 037236 763 KVAKTLLE-LEPDKAENYVLVSN 784 (953)
Q Consensus 763 ~~~~~~~~-l~p~~~~~~~~l~~ 784 (953)
++++.+.+ .+|-+...+...++
T Consensus 279 ~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 279 TVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHHhccChHHHHHHHHHHh
Confidence 99999996 89988887766554
No 113
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.68 E-value=3.1e-08 Score=103.56 Aligned_cols=190 Identities=9% Similarity=-0.078 Sum_probs=142.4
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 037236 607 DAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILM 682 (953)
Q Consensus 607 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~ 682 (953)
+...+..+...|.+.|++++|...|++.. +.+...|..+...|...|++++|+..+++.++ ..| +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 44566778889999999999999999876 44788999999999999999999999999998 567 6678889999
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHH
Q 037236 683 ACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSCRTYGALKMG 761 (953)
Q Consensus 683 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 761 (953)
++...|++++|...|+...+.. |+ ...+...+....+..+..+... .......++..+...+.. + ..|+.+.|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~---p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~-l-~~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA---KEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTR-L-IAAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH---HHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHH-H-HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC---ccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHH-H-HHHHHHHH
Confidence 9999999999999999987633 32 1112222222222222222222 223333455555555533 3 36899999
Q ss_pred HHHHHHHhccCCCCcchHHHHHHHHHhc-CCchHHHHHHHHHHH
Q 037236 762 EKVAKTLLELEPDKAENYVLVSNIYAGS-EKWDDVRMMRQRMKE 804 (953)
Q Consensus 762 ~~~~~~~~~l~p~~~~~~~~l~~~y~~~-g~~~~a~~~~~~m~~ 804 (953)
...++++++++|++......+..++... +++++|.+++..+.+
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999988888888888887 789999998887754
No 114
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.67 E-value=2.1e-07 Score=89.57 Aligned_cols=157 Identities=13% Similarity=0.002 Sum_probs=122.0
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-H
Q 037236 609 FVACSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMA-C 684 (953)
Q Consensus 609 ~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a-~ 684 (953)
.....+...+.+.|++++|...|++.. +.+...|..+...+...|++++|+..|++.... .|+...+..+... +
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLEL 84 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHH
Confidence 345566778889999999999999987 457788999999999999999999999998773 4544333222211 2
Q ss_pred HhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCC---hhHHHHHHHHHHhcCChh
Q 037236 685 NHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE-EAD---AGIWSSLLRSCRTYGALK 759 (953)
Q Consensus 685 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~~---~~~~~~ll~~~~~~g~~~ 759 (953)
...+...+|...+++..+ ..|+ ...+..+..+|.+.|++++|.+.++++.. .|+ ...|..+...+...|+.+
T Consensus 85 ~~~~~~~~a~~~~~~al~---~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELA---ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHHHTSCHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSC
T ss_pred HhhcccchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCC
Confidence 222333457888888876 5566 78888999999999999999999987653 443 568999999999999999
Q ss_pred HHHHHHHHHhc
Q 037236 760 MGEKVAKTLLE 770 (953)
Q Consensus 760 ~a~~~~~~~~~ 770 (953)
.|...+++++.
T Consensus 162 ~A~~~y~~al~ 172 (176)
T 2r5s_A 162 AIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 99999998763
No 115
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.64 E-value=7.6e-07 Score=93.29 Aligned_cols=170 Identities=11% Similarity=0.088 Sum_probs=110.8
Q ss_pred HHHHhcccCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCC
Q 037236 528 VLFDEMEDKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTND 607 (953)
Q Consensus 528 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~ 607 (953)
..+......+...+..+...+.+.|++++|+..|++..+. .|+ +
T Consensus 107 ~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~----------------------------------~ 150 (287)
T 3qou_A 107 ALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQ----------------------------------N 150 (287)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTS----------------------------------C
T ss_pred HHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCc----------------------------------c
Confidence 3333333333445556666677777777777777777664 343 4
Q ss_pred ccHHHHHHHHHHhcCCHHHHHHHhhhcC--CCCHHHHHH-HHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 037236 608 AFVACSIIDMYAKCGCLEQSRRVFDRLK--DKDVTSWNA-IIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMA 683 (953)
Q Consensus 608 ~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a 683 (953)
...+..+...|.+.|++++|...|+++. .|+...+.. ....+...++.++|+..|++..+ ..| +...+..+..+
T Consensus 151 ~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~--~~P~~~~~~~~la~~ 228 (287)
T 3qou_A 151 GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVA--ENPEDAALATQLALQ 228 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 5566677778888888888888888876 344433222 22335666777778888888777 356 56677778888
Q ss_pred HHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHh
Q 037236 684 CNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIE 735 (953)
Q Consensus 684 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~ 735 (953)
+...|++++|...|.++++...-..+...+..|+.+|...|+.++|...+++
T Consensus 229 l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 229 LHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRR 280 (287)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 8888888888888888776332222245566667777777776666666554
No 116
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.63 E-value=6e-07 Score=95.21 Aligned_cols=219 Identities=10% Similarity=0.004 Sum_probs=157.5
Q ss_pred cCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHH
Q 037236 551 NKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRV 630 (953)
Q Consensus 551 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 630 (953)
.|++++|.+++++..+... .. + +...++++.+...+..+ +..|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~---~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS---F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC---S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc---c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 5678899999988775321 11 0 11136677766666544 5678889999999998
Q ss_pred hhhcCC-----CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC---CCC--HHHHHHHHHHHHhcCCHHHHHHH
Q 037236 631 FDRLKD-----KD----VTSWNAIIGGHGIHGYGKEAIELFEKMLALGH---KPD--TFTFVGILMACNHAGLVENGLKY 696 (953)
Q Consensus 631 ~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~P~--~~t~~~ll~a~~~~g~~~~a~~~ 696 (953)
|.+... .+ ..+|+.+...|...|++++|+..|++.++.-. .|. ..++..+..+|.. |++++|+.+
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 887651 12 34788899999999999999999999876311 222 3567888888988 999999999
Q ss_pred HHHHHHhcCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhCCC----CCC----hhHHHHHHHHHHhcCChhHHHHH
Q 037236 697 FSQMQKLHAVKPK----LEHYACVVDMLGRAGKLDDAFKLIIEMPE----EAD----AGIWSSLLRSCRTYGALKMGEKV 764 (953)
Q Consensus 697 ~~~m~~~~~~~p~----~~~~~~lv~~l~~~g~~~eA~~~~~~~~~----~~~----~~~~~~ll~~~~~~g~~~~a~~~ 764 (953)
|++.++.+.-..+ ...+..+..+|.+.|++++|++.+++... .++ ...+..++..+...|+++.|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9998764321111 46788899999999999999999987653 122 23566666677778999999999
Q ss_pred HHHHhccCCCCcch-----HHHHHHHHHhcCCchHHHH
Q 037236 765 AKTLLELEPDKAEN-----YVLVSNIYAGSEKWDDVRM 797 (953)
Q Consensus 765 ~~~~~~l~p~~~~~-----~~~l~~~y~~~g~~~~a~~ 797 (953)
+++++ ++|+.... ...++..| ..|+.+.+..
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 99999 99976654 33445555 5666655544
No 117
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.61 E-value=2.4e-07 Score=85.47 Aligned_cols=99 Identities=14% Similarity=0.025 Sum_probs=79.5
Q ss_pred CCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHH
Q 037236 706 VKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLV 782 (953)
Q Consensus 706 ~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l 782 (953)
+.|+ ...+..+...+.+.|++++|++.|++... +.++..|..+..++...|+++.|...++++++++|+++.++..+
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 92 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA 92 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 4444 44555666677777777777777776543 34677888888888999999999999999999999999999999
Q ss_pred HHHHHhcCCchHHHHHHHHHHH
Q 037236 783 SNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 783 ~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
+.+|...|++++|...++...+
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999998877655
No 118
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.58 E-value=9.9e-07 Score=88.69 Aligned_cols=183 Identities=14% Similarity=0.012 Sum_probs=128.3
Q ss_pred hhHHHHHHHhccccchHHHHHHHHHHHHcCCCCC--ccHHHHHHHHHHhcCCHHHHHHHhhhcC--CCC-H---HHHHHH
Q 037236 574 ISIVSILSACSQLSALRLGKETHCYALKAILTND--AFVACSIIDMYAKCGCLEQSRRVFDRLK--DKD-V---TSWNAI 645 (953)
Q Consensus 574 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~-~---~~~~~l 645 (953)
..+......+...|++++|...+..+.+...... ...+..++..|.+.|++++|...|++.. .|+ . ..|..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 3445556677889999999999999998654322 3567888999999999999999999876 232 2 245555
Q ss_pred HHHHHh------------------cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q 037236 646 IGGHGI------------------HGYGKEAIELFEKMLALGHKPDTF-TFVGILMACNHAGLVENGLKYFSQMQKLHAV 706 (953)
Q Consensus 646 i~~~~~------------------~g~~~~A~~l~~~m~~~g~~P~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 706 (953)
..++.. .|+.++|+..|+++++ ..|+.. ....... . ..+...+
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a~~~----l------~~~~~~~------ 146 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDATKR----L------VFLKDRL------ 146 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHT--TCTTCTTHHHHHHH----H------HHHHHHH------
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHHHHH----H------HHHHHHH------
Confidence 555553 5789999999999998 467543 2211111 0 0000111
Q ss_pred CCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCC----hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcc
Q 037236 707 KPKLEHYACVVDMLGRAGKLDDAFKLIIEMPE-EAD----AGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAE 777 (953)
Q Consensus 707 ~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~ 777 (953)
......+...|.+.|++++|+..++++.. .|+ ...+..+..++...|+.+.|...++++....|++..
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 11223467788889999999988887653 343 246888888899999999999999998888887654
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.56 E-value=8.9e-07 Score=88.02 Aligned_cols=145 Identities=9% Similarity=-0.038 Sum_probs=98.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 037236 611 ACSIIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGL 689 (953)
Q Consensus 611 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~ 689 (953)
+..+...|.+.|++++|...|++..+++...|..+...|...|++++|++.|++.++. .| +...+..+..++...|+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHccc
Confidence 4456667777788888888887777777777777777777777788887777777773 45 55667777777777777
Q ss_pred HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-ChhHHHHHHHHHHhcCChhHHHHHHHHH
Q 037236 690 VENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPEEA-DAGIWSSLLRSCRTYGALKMGEKVAKTL 768 (953)
Q Consensus 690 ~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 768 (953)
+++|...|+.+.+...-.+... +...| +...| ...+|..+...+...|+++.|...++++
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~--------~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLID--------YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEE--------CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCccHHH--------HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 7777777777765221111110 00000 01112 2467788888888889999999999999
Q ss_pred hccCCCCc
Q 037236 769 LELEPDKA 776 (953)
Q Consensus 769 ~~l~p~~~ 776 (953)
+++.|++.
T Consensus 148 l~~~p~~~ 155 (213)
T 1hh8_A 148 TSMKSEPR 155 (213)
T ss_dssp HTTCCSGG
T ss_pred HHcCcccc
Confidence 99998764
No 120
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.55 E-value=7.1e-07 Score=88.78 Aligned_cols=124 Identities=13% Similarity=-0.000 Sum_probs=86.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHh
Q 037236 677 FVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRT 754 (953)
Q Consensus 677 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~ 754 (953)
+..+...+...|++++|...|++. +.|+...+..+...|.+.|++++|++.+++... +.+...|..+...+..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 334445555556666666655544 234555555666666666666666666655432 3355677777777777
Q ss_pred cCChhHHHHHHHHHhccCCCCc----------------chHHHHHHHHHhcCCchHHHHHHHHHHHC
Q 037236 755 YGALKMGEKVAKTLLELEPDKA----------------ENYVLVSNIYAGSEKWDDVRMMRQRMKER 805 (953)
Q Consensus 755 ~g~~~~a~~~~~~~~~l~p~~~----------------~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 805 (953)
.|+++.|...+++++++.|++. .++..++.+|...|++++|...++...+.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 8888888888888888777776 89999999999999999999998887653
No 121
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.54 E-value=3e-06 Score=84.19 Aligned_cols=160 Identities=8% Similarity=-0.104 Sum_probs=130.1
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHhhhcC-CCCHHHHHHHHHHHHhcC----ChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 037236 607 DAFVACSIIDMYAKCGCLEQSRRVFDRLK-DKDVTSWNAIIGGHGIHG----YGKEAIELFEKMLALGHKPDTFTFVGIL 681 (953)
Q Consensus 607 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g----~~~~A~~l~~~m~~~g~~P~~~t~~~ll 681 (953)
++..+..|..+|...|++++|...|++.. ..++..+..|...|.. | +.++|++.|++..+.| +...+..|.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg 92 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLA 92 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 67778888889999999999999999876 4577788888888887 6 8999999999998754 667778888
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHhcCCCCC---hhHHHHHHHHHhh----cCCHHHHHHHHHhCCCC-CChhHHHHHH
Q 037236 682 MACNH----AGLVENGLKYFSQMQKLHAVKPK---LEHYACVVDMLGR----AGKLDDAFKLIIEMPEE-ADAGIWSSLL 749 (953)
Q Consensus 682 ~a~~~----~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~lv~~l~~----~g~~~eA~~~~~~~~~~-~~~~~~~~ll 749 (953)
..|.. .+++++|..+|++..+ ..|. +..+..|..+|.. .+++++|++++++.... +++..+..|.
T Consensus 93 ~~y~~g~g~~~d~~~A~~~~~~A~~---~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg 169 (212)
T 3rjv_A 93 RVLVNRQAGATDVAHAITLLQDAAR---DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAG 169 (212)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHTS---STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHH
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHH---cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 88877 8899999999998854 3443 6788889899988 88999999999887554 5677788887
Q ss_pred HHHHhc-C-----ChhHHHHHHHHHhccCC
Q 037236 750 RSCRTY-G-----ALKMGEKVAKTLLELEP 773 (953)
Q Consensus 750 ~~~~~~-g-----~~~~a~~~~~~~~~l~p 773 (953)
..|... | |.++|...++++.+..+
T Consensus 170 ~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 170 MMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 777543 3 89999999999988754
No 122
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.53 E-value=4.6e-06 Score=87.70 Aligned_cols=159 Identities=8% Similarity=-0.045 Sum_probs=114.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC----hhHHHH
Q 037236 645 IIGGHGIHGYGKEAIELFEKMLALG-HKPDTF----TFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK----LEHYAC 715 (953)
Q Consensus 645 li~~~~~~g~~~~A~~l~~~m~~~g-~~P~~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~ 715 (953)
.+..+...|++++|..++++..+.. ..|+.. .+..+...+...|++++|+.+|+.+.+...-.++ ...|+.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 4566778888888888888887732 122211 2334666667777888888888888763222233 235788
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCC-------C-C-ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC------cchHH
Q 037236 716 VVDMLGRAGKLDDAFKLIIEMPE-------E-A-DAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDK------AENYV 780 (953)
Q Consensus 716 lv~~l~~~g~~~eA~~~~~~~~~-------~-~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~------~~~~~ 780 (953)
+...|.+.|++++|++.++++.. . + ...++..++..|...|+++.|...+++++++.++. +.+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88888888888888888776641 1 1 13478888889999999999999999999875443 67889
Q ss_pred HHHHHHHhcCC-chHHHHHHHHHH
Q 037236 781 LVSNIYAGSEK-WDDVRMMRQRMK 803 (953)
Q Consensus 781 ~l~~~y~~~g~-~~~a~~~~~~m~ 803 (953)
.+|.+|...|+ +++|...+++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 99999999995 599998766553
No 123
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.53 E-value=3.8e-07 Score=84.67 Aligned_cols=104 Identities=8% Similarity=-0.046 Sum_probs=87.0
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHH
Q 037236 670 HKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIW 745 (953)
Q Consensus 670 ~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~ 745 (953)
+.| +...+..+...+...|++++|...|+.+++ +.|+ ...|..+..+|.+.|++++|++.|++... +.++..|
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~ 107 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI---YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV 107 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHH
Confidence 466 455678888888999999999999998876 4565 77888889999999999999999887753 4467889
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 037236 746 SSLLRSCRTYGALKMGEKVAKTLLELEPDKA 776 (953)
Q Consensus 746 ~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~ 776 (953)
..+..++...|+++.|...+++++++.|+++
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999999999999998654
No 124
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.53 E-value=2.3e-07 Score=86.18 Aligned_cols=115 Identities=11% Similarity=-0.005 Sum_probs=79.3
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-
Q 037236 662 FEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE- 738 (953)
Q Consensus 662 ~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~- 738 (953)
|++++. +.| +...+..+...+...|++++|...|+..++ +.|+ ...|..+..+|.+.|++++|++.+++...
T Consensus 10 ~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 10 IAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCV---LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp HHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH---cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 444444 445 344566666677777777777777777655 3343 55666677777777777777777766542
Q ss_pred -CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHH
Q 037236 739 -EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVL 781 (953)
Q Consensus 739 -~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~ 781 (953)
+.++..|..+..++...|+++.|...+++++++.|+++.....
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 128 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXEL 128 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHH
Confidence 3456778888888888888999999999999999988765443
No 125
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.51 E-value=7.6e-07 Score=79.36 Aligned_cols=114 Identities=18% Similarity=0.237 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHH
Q 037236 675 FTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSC 752 (953)
Q Consensus 675 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~ 752 (953)
.++..+...+...|++++|..+|+++.+.. ..+...+..+...+.+.|++++|...++++.. +.+..+|..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 445555555555666666666665554421 11244555556666666666666666655432 34566777888888
Q ss_pred HhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 037236 753 RTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSE 790 (953)
Q Consensus 753 ~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g 790 (953)
...|+++.|...++++++++|+++..+..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 88888999999999999999999999999988887654
No 126
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.51 E-value=2e-05 Score=88.99 Aligned_cols=125 Identities=12% Similarity=0.042 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 037236 640 TSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACN-HAGLVENGLKYFSQMQKLHAVKPKLEHYACVVD 718 (953)
Q Consensus 640 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~-~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~ 718 (953)
..|...+..+.++|..+.|..+|++. .. ..++...|......-. ..++++.|..+|+...+.++-. +..+...++
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~--~~~~~~yid 362 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDS--TLLKEEFFL 362 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTC--HHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCC--HHHHHHHHH
Confidence 46777788777788899999999998 32 1124444443222222 2346999999999998865433 445666788
Q ss_pred HHhhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 037236 719 MLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSCRTYGALKMGEKVAKTLLE 770 (953)
Q Consensus 719 ~l~~~g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 770 (953)
...+.|+.+.|..+++++. .....|...+.--..+|+.+.+..++++.++
T Consensus 363 ~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 363 FLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8889999999999999984 3577899999888889999888888887653
No 127
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.50 E-value=8.7e-07 Score=83.88 Aligned_cols=125 Identities=13% Similarity=0.074 Sum_probs=81.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHH
Q 037236 677 FVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCR 753 (953)
Q Consensus 677 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~ 753 (953)
+..+...+...|++++|...|+...+. .|+ ...+..+..++.+.|++++|++.+++... +.+..+|..+...+.
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 444444555555555555555555442 222 44455555555555566665555554432 334667777888888
Q ss_pred hcCChhHHHHHHHHHhccCCCCcchHHHHHH--HHHhcCCchHHHHHHHHHHH
Q 037236 754 TYGALKMGEKVAKTLLELEPDKAENYVLVSN--IYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 754 ~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~--~y~~~g~~~~a~~~~~~m~~ 804 (953)
..|+++.|...++++++++|+++..+..++. .+...|++++|........+
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 8888899999999999999999888855444 48888999999998776543
No 128
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.50 E-value=8e-07 Score=79.96 Aligned_cols=117 Identities=10% Similarity=0.012 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHH
Q 037236 674 TFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKP-KLEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLR 750 (953)
Q Consensus 674 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~ 750 (953)
...+..+...+...|++++|..+|+.+.+. .| +...+..+...+...|++++|.+.+++... +.+..+|..+..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL---NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 344555555555666666666666655442 23 245555566666666666666666655432 334667778888
Q ss_pred HHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCch
Q 037236 751 SCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWD 793 (953)
Q Consensus 751 ~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~ 793 (953)
.+...|+++.|...+++++++.|+++..+..++.++...|+++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 8888889999999999999999999999999999999888763
No 129
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.49 E-value=7.4e-07 Score=80.63 Aligned_cols=114 Identities=12% Similarity=0.047 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHH
Q 037236 675 FTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRS 751 (953)
Q Consensus 675 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~ 751 (953)
..+..+...+...|++++|..+|+...+ ..|+ ...+..+..+|.+.|++++|++.+++... +.+..+|..+...
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIK---RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHT---TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 3444555555555555555555555433 2232 44455555555555555555555554432 2346677777788
Q ss_pred HHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCC
Q 037236 752 CRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEK 791 (953)
Q Consensus 752 ~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 791 (953)
+...|+++.|...++++++++|++...+..++.+|...|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8888888888888999999999999999999998887764
No 130
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.49 E-value=3e-06 Score=89.10 Aligned_cols=162 Identities=7% Similarity=-0.080 Sum_probs=115.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-H----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC----hh
Q 037236 641 SWNAIIGGHGIHGYGKEAIELFEKMLALGHKPD-T----FTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK----LE 711 (953)
Q Consensus 641 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~-~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~ 711 (953)
.+...+..+...|++++|++.+++.++.....+ . ..+..+...+...|++++|...++...+...-..+ ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 445566777888888888888888777422111 1 22344555667788888888888887643221122 34
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCCC----CCC-----hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCC------Cc
Q 037236 712 HYACVVDMLGRAGKLDDAFKLIIEMPE----EAD-----AGIWSSLLRSCRTYGALKMGEKVAKTLLELEPD------KA 776 (953)
Q Consensus 712 ~~~~lv~~l~~~g~~~eA~~~~~~~~~----~~~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~------~~ 776 (953)
.|+.+...|...|++++|++.++++.. .|+ ..++..++..|...|+++.|...+++++++.++ -+
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 677888888888888888888876541 222 257888888899999999999999999887532 26
Q ss_pred chHHHHHHHHHhcCCchHH-HHHHHHH
Q 037236 777 ENYVLVSNIYAGSEKWDDV-RMMRQRM 802 (953)
Q Consensus 777 ~~~~~l~~~y~~~g~~~~a-~~~~~~m 802 (953)
.+|..++.+|...|++++| ...+++.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 6789999999999999999 6645443
No 131
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.49 E-value=6e-07 Score=80.66 Aligned_cols=94 Identities=12% Similarity=0.053 Sum_probs=73.7
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 037236 711 EHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAG 788 (953)
Q Consensus 711 ~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 788 (953)
..+..+...+.+.|++++|++.+++... +.++.+|..+..++...|+++.|...++++++++|+++.++..++.+|..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 3455566666777777777777765542 34567888888888888888899999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHHH
Q 037236 789 SEKWDDVRMMRQRMKE 804 (953)
Q Consensus 789 ~g~~~~a~~~~~~m~~ 804 (953)
.|++++|...+++..+
T Consensus 85 ~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 85 VKEYASALETLDAART 100 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHH
Confidence 9999999987776655
No 132
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.49 E-value=6e-07 Score=95.23 Aligned_cols=196 Identities=7% Similarity=-0.026 Sum_probs=150.9
Q ss_pred ccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 037236 586 LSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKM 665 (953)
Q Consensus 586 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 665 (953)
.|++++|.+++....+.... . .+...|++++|...|.+ ....|...|++++|+..|.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~a 62 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQE 62 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHH
Confidence 56778888888877664221 1 11115788888888776 356788999999999999998
Q ss_pred HHCCC---CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 037236 666 LALGH---KP--DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK----LEHYACVVDMLGRAGKLDDAFKLIIEM 736 (953)
Q Consensus 666 ~~~g~---~P--~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~lv~~l~~~g~~~eA~~~~~~~ 736 (953)
.+... .| -..+|..+...|...|++++|+..|++.++.+.-..+ ...+..+..+|.+ |++++|++.+++.
T Consensus 63 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~A 141 (307)
T 2ifu_A 63 AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQA 141 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 76311 11 1357888999999999999999999998765322212 4678888999998 9999999999876
Q ss_pred CC----CCC----hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc------chHHHHHHHHHhcCCchHHHHHHHHH
Q 037236 737 PE----EAD----AGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKA------ENYVLVSNIYAGSEKWDDVRMMRQRM 802 (953)
Q Consensus 737 ~~----~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~------~~~~~l~~~y~~~g~~~~a~~~~~~m 802 (953)
.. ..+ ..++..+...+...|+++.|...+++++++.|++. ..+..++.+|...|++++|...+++.
T Consensus 142 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 43 111 45788899999999999999999999999877654 36778888999999999999988766
Q ss_pred H
Q 037236 803 K 803 (953)
Q Consensus 803 ~ 803 (953)
.
T Consensus 222 l 222 (307)
T 2ifu_A 222 Y 222 (307)
T ss_dssp T
T ss_pred h
Confidence 4
No 133
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.49 E-value=8.7e-07 Score=85.16 Aligned_cols=115 Identities=10% Similarity=0.121 Sum_probs=67.7
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHH-HHhcCCh--hH
Q 037236 687 AGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRS-CRTYGAL--KM 760 (953)
Q Consensus 687 ~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~-~~~~g~~--~~ 760 (953)
.|++++|...++...+. .|+ ...|..+..+|...|++++|.+.+++... +.++..|..+... +...|++ +.
T Consensus 23 ~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp ----CCCCHHHHHHHHH---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred ccCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 34444444444444331 122 34444444444455555555544444322 2345566666666 5566776 77
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 761 GEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 761 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
|...++++++++|+++.++..++.+|...|++++|...++...+
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 77777888888888888888888888888888888887776655
No 134
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.48 E-value=4.9e-07 Score=97.15 Aligned_cols=142 Identities=11% Similarity=-0.017 Sum_probs=100.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHH
Q 037236 638 DVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACV 716 (953)
Q Consensus 638 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l 716 (953)
+...|..+...|...|++++|+..|++.++ +.|+...+ ..+++... .|. ...|..+
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~-----------~~~~~~~~----------~~~~~~~~~nl 202 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVS--WLEYESSF-----------SNEEAQKA----------QALRLASHLNL 202 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HTTTCCCC-----------CSHHHHHH----------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HhhccccC-----------ChHHHHHH----------HHHHHHHHHHH
Confidence 455677777777777888888888877777 34532100 00111110 011 3456666
Q ss_pred HHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchH
Q 037236 717 VDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDD 794 (953)
Q Consensus 717 v~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 794 (953)
..+|.+.|++++|++.+++... +.++..|..+..++...|+++.|...++++++++|+++.++..++.+|...|++++
T Consensus 203 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 203 AMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777777666543 34677888888899999999999999999999999999999999999999999999
Q ss_pred HHH-HHHHH
Q 037236 795 VRM-MRQRM 802 (953)
Q Consensus 795 a~~-~~~~m 802 (953)
|.+ .++.|
T Consensus 283 a~~~~~~~~ 291 (336)
T 1p5q_A 283 REKKLYANM 291 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 944 55555
No 135
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.48 E-value=1.5e-06 Score=88.28 Aligned_cols=180 Identities=7% Similarity=-0.031 Sum_probs=135.9
Q ss_pred hcCCHHHHHHHhhhcC---CCCHHHHHHH-------HHHHHhcCChHHHHHHHHHHHHCCCCCCH---------------
Q 037236 620 KCGCLEQSRRVFDRLK---DKDVTSWNAI-------IGGHGIHGYGKEAIELFEKMLALGHKPDT--------------- 674 (953)
Q Consensus 620 ~~g~~~~A~~~~~~~~---~~~~~~~~~l-------i~~~~~~g~~~~A~~l~~~m~~~g~~P~~--------------- 674 (953)
..++...|.+.|.++. +.....|+.+ ...+...++..+++..+.+-.. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 4788999999999876 4456788888 4566666666666666665554 34421
Q ss_pred -------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCh----h
Q 037236 675 -------FTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPEEADA----G 743 (953)
Q Consensus 675 -------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~~----~ 743 (953)
.....+..++...|++++|.+.|+.+.. ..|+......+..++.+.|++++|+..++.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 1234566778889999999999987743 3465325666777899999999999999876554433 3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhccC--CC-CcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 744 IWSSLLRSCRTYGALKMGEKVAKTLLELE--PD-KAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 744 ~~~~ll~~~~~~g~~~~a~~~~~~~~~l~--p~-~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
++..+..++...|++++|...++++.+-. |. .+...+.++.++.+.|+.++|..+++++..
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 77888888999999999999999998543 55 556788999999999999999999988877
No 136
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.43 E-value=7.1e-07 Score=100.72 Aligned_cols=113 Identities=9% Similarity=-0.008 Sum_probs=54.8
Q ss_pred HHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHH
Q 037236 617 MYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVEN 692 (953)
Q Consensus 617 ~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~ 692 (953)
.|.+.|++++|.+.|++.. +.+...|..+..+|...|++++|++.|++.++ +.| +..++..+..++...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHH
Confidence 3445555555555555443 23445555555555555555555555555555 344 34445555555555555555
Q ss_pred HHHHHHHHHHhcCCCCC-hhHHHHHHHH--HhhcCCHHHHHHHHH
Q 037236 693 GLKYFSQMQKLHAVKPK-LEHYACVVDM--LGRAGKLDDAFKLII 734 (953)
Q Consensus 693 a~~~~~~m~~~~~~~p~-~~~~~~lv~~--l~~~g~~~eA~~~~~ 734 (953)
|.+.|+++.+. .|+ ...+..+..+ +.+.|++++|++.++
T Consensus 93 A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 55555555442 222 2233333333 444555555555544
No 137
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.43 E-value=7.2e-07 Score=100.70 Aligned_cols=114 Identities=13% Similarity=0.090 Sum_probs=76.2
Q ss_pred HHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhH
Q 037236 684 CNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKM 760 (953)
Q Consensus 684 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~ 760 (953)
+...|++++|.+.|++..+ +.|+ ...|..+..+|.+.|++++|++.+++... +.++..|..+..++...|++++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIE---LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 3445555555555555544 2333 44555555555555555555555554432 2356678888888888899999
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHH--HHhcCCchHHHHHHH
Q 037236 761 GEKVAKTLLELEPDKAENYVLVSNI--YAGSEKWDDVRMMRQ 800 (953)
Q Consensus 761 a~~~~~~~~~l~p~~~~~~~~l~~~--y~~~g~~~~a~~~~~ 800 (953)
|...++++++++|+++.++..++.+ +...|++++|.+..+
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999988 888999999998765
No 138
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.41 E-value=6.3e-07 Score=86.17 Aligned_cols=128 Identities=11% Similarity=0.100 Sum_probs=97.7
Q ss_pred HhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHH-HhhcCCH
Q 037236 650 GIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDM-LGRAGKL 726 (953)
Q Consensus 650 ~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~-l~~~g~~ 726 (953)
...|++++|+..|++..+. .| +...+..+...+...|++++|..+|+++.+. .|+ ...+..+..+ +.+.|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL---RGENAELYAALATVLYYQASQH 95 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTC
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCCc
Confidence 4567788888888888774 45 6677888888888889999999988888763 343 5677777777 7788888
Q ss_pred --HHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHH
Q 037236 727 --DDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLV 782 (953)
Q Consensus 727 --~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l 782 (953)
++|.+.+++... +.+...|..+...+...|+++.|...++++++++|+++.....+
T Consensus 96 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 155 (177)
T 2e2e_A 96 MTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLV 155 (177)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHH
T ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 899888887653 34577888888899999999999999999999999887654433
No 139
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.41 E-value=1.1e-05 Score=84.90 Aligned_cols=216 Identities=12% Similarity=0.128 Sum_probs=143.3
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcC-CHHH
Q 037236 548 YSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCG-CLEQ 626 (953)
Q Consensus 548 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g-~~~~ 626 (953)
..+.+..++|++++.+++.. .|+. ..+++.-...+...| .+++
T Consensus 64 ~~~~e~se~AL~lt~~~L~~--nP~~----------------------------------ytaWn~R~~iL~~l~~~l~e 107 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRM--NPAH----------------------------------YTVWQYRFSLLTSLNKSLED 107 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHH--CTTC----------------------------------HHHHHHHHHHHHHTTCCHHH
T ss_pred HHhCCCCHHHHHHHHHHHHh--Cchh----------------------------------HHHHHHHHHHHHHhhhhHHH
Confidence 34445556788888887765 4542 333444444445556 4777
Q ss_pred HHHHhhhcC---CCCHHHHHHHHHHHHhc-C-ChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHH--------H
Q 037236 627 SRRVFDRLK---DKDVTSWNAIIGGHGIH-G-YGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVE--------N 692 (953)
Q Consensus 627 A~~~~~~~~---~~~~~~~~~li~~~~~~-g-~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~--------~ 692 (953)
+...++.+. +++..+|+.-...+... + ++++++++++++++ ..| |...|..-.....+.|.++ +
T Consensus 108 EL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~--~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~e 185 (349)
T 3q7a_A 108 ELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLL--PDPKNYHTWAYLHWLYSHFSTLGRISEAQWGS 185 (349)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTS--SCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhccccccchhhHHH
Confidence 777777765 45677787776666665 6 77888888888887 456 6677766666666666555 7
Q ss_pred HHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCC-------HHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCCh----
Q 037236 693 GLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGK-------LDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGAL---- 758 (953)
Q Consensus 693 a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~-------~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~---- 758 (953)
++++++++++ ..|. ...|+....++.+.|+ ++++++.++++.. +.|...|+-+-+.+...|+.
T Consensus 186 ELe~~~k~I~---~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~ 262 (349)
T 3q7a_A 186 ELDWCNEMLR---VDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPI 262 (349)
T ss_dssp HHHHHHHHHH---HCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGG
T ss_pred HHHHHHHHHH---hCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccc
Confidence 8888888876 3344 5667777777777775 6788888876643 45778888877777766653
Q ss_pred ----------------hHHHHHHHHHhccC------CCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 759 ----------------KMGEKVAKTLLELE------PDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 759 ----------------~~a~~~~~~~~~l~------p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
+.....+..+.... +..+-+...|+.+|...|+.++|.++.+.+.+
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 263 LPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 22222222222222 45667788999999999999999999998865
No 140
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.39 E-value=5e-07 Score=83.28 Aligned_cols=108 Identities=10% Similarity=0.003 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHH
Q 037236 675 FTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRS 751 (953)
Q Consensus 675 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~ 751 (953)
..+..+...+...|++++|...|+..++ ..|+ ...|..+..+|.+.|++++|++.+++... +.++..|..+..+
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCM---LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 4455555666666666666666666654 2343 45566666666666666666666665532 3355677777777
Q ss_pred HHhcCChhHHHHHHHHHhccCCCCcchHHHHHHH
Q 037236 752 CRTYGALKMGEKVAKTLLELEPDKAENYVLVSNI 785 (953)
Q Consensus 752 ~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 785 (953)
+...|+++.|...+++++++.|+++........+
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 8888888888888888888888888766554433
No 141
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.37 E-value=1.8e-06 Score=87.70 Aligned_cols=136 Identities=10% Similarity=-0.015 Sum_probs=91.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHH
Q 037236 642 WNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK--LEHYACVVDM 719 (953)
Q Consensus 642 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~lv~~ 719 (953)
+-.+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...+ .. .|. ...+..+..+
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~-~~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGK-WP-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG-CS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhc-cC-CcccHHHHHHHHHHH
Confidence 344556677777777777777776653 46444555666677778888888887765532 11 111 2356667777
Q ss_pred HhhcCCHHHHHHHHHhCCCC---CC--hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHH
Q 037236 720 LGRAGKLDDAFKLIIEMPEE---AD--AGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLV 782 (953)
Q Consensus 720 l~~~g~~~eA~~~~~~~~~~---~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l 782 (953)
+.+.|++++|++.+++.... |. +..+..+..+++..|+.++|...++++++.+|+ +.+...|
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 88888888888888766432 32 236677777888889999999999999999997 6554444
No 142
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.37 E-value=1.9e-05 Score=82.91 Aligned_cols=158 Identities=11% Similarity=-0.040 Sum_probs=121.9
Q ss_pred HHHHHHhcCCHHHHHHHhhhcCC-----CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----HHHHHH
Q 037236 614 IIDMYAKCGCLEQSRRVFDRLKD-----KD----VTSWNAIIGGHGIHGYGKEAIELFEKMLALGHK-PD----TFTFVG 679 (953)
Q Consensus 614 li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-P~----~~t~~~ 679 (953)
.+..+.+.|++++|...+++... ++ ...+..+...+...|++++|+..|++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46778889999999999998652 12 113345667777888999999999999984322 23 236889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhc----CCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-------CCC-hhHHH
Q 037236 680 ILMACNHAGLVENGLKYFSQMQKLH----AVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE-------EAD-AGIWS 746 (953)
Q Consensus 680 ll~a~~~~g~~~~a~~~~~~m~~~~----~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-------~~~-~~~~~ 746 (953)
+..+|...|++++|..+|+.+.+.. +..|. ...|..+...|.+.|++++|++.+++... .+. +.+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999999999999999997532 22222 45788899999999999999999887642 122 56888
Q ss_pred HHHHHHHhcCC-hhHHHHHHHHHhcc
Q 037236 747 SLLRSCRTYGA-LKMGEKVAKTLLEL 771 (953)
Q Consensus 747 ~ll~~~~~~g~-~~~a~~~~~~~~~l 771 (953)
.++.++...|+ .+.|...+++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 99999999995 69999999998764
No 143
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.35 E-value=2.8e-07 Score=90.59 Aligned_cols=171 Identities=8% Similarity=-0.019 Sum_probs=98.4
Q ss_pred HHHHHHHhcCCHHHHHHHhhhcCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 037236 613 SIIDMYAKCGCLEQSRRVFDRLKD---KDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGL 689 (953)
Q Consensus 613 ~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~ 689 (953)
..+......|++++|.+.|+.... .....|..+...+...|++++|+..|++.++ ..|+...+... .
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~--------~ 78 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALD--FFIHTEEWDDQ--------I 78 (198)
T ss_dssp -------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTTTCTTCCCH--------H
T ss_pred chhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHhcccccchh--------h
Confidence 344455556777777777764432 2344666777777778888888888888777 33321100000 0
Q ss_pred HHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHH
Q 037236 690 VENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKT 767 (953)
Q Consensus 690 ~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 767 (953)
.+.-. ..+ ....|..+..+|.+.|++++|++.+++... +.+..+|..+..++...|+++.|...+++
T Consensus 79 ~~~~~---~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 147 (198)
T 2fbn_A 79 LLDKK---KNI--------EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYK 147 (198)
T ss_dssp HHHHH---HHH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHH---HHH--------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 00000 000 024455566666667777777666665532 34567788888888899999999999999
Q ss_pred HhccCCCCcchHHHHHHHHHhcCCchHHH-HHHHHHHH
Q 037236 768 LLELEPDKAENYVLVSNIYAGSEKWDDVR-MMRQRMKE 804 (953)
Q Consensus 768 ~~~l~p~~~~~~~~l~~~y~~~g~~~~a~-~~~~~m~~ 804 (953)
+++++|+++.++..++.++...|+.+++. ..++.|-.
T Consensus 148 al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 148 AASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999988888776 34444433
No 144
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.34 E-value=2.3e-05 Score=82.31 Aligned_cols=166 Identities=14% Similarity=-0.028 Sum_probs=108.9
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHH
Q 037236 540 SWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYA 619 (953)
Q Consensus 540 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 619 (953)
.+...+..+...|++++|++.+.+..+.... .... .. ....+..+...|.
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~-~~----------------------------~~~~~~~~~~~~~ 126 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEF-QQ----------------------------FLQWQYYVAAYVL 126 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHH-HH----------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhH-HH----------------------------HHHHHHHHHHHHh
Confidence 4455677788899999999999887765321 1100 00 0111233556677
Q ss_pred hcCCHHHHHHHhhhcCC-----CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCC-----HHHHHHHHHHH
Q 037236 620 KCGCLEQSRRVFDRLKD-----KD----VTSWNAIIGGHGIHGYGKEAIELFEKMLAL-GHKPD-----TFTFVGILMAC 684 (953)
Q Consensus 620 ~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~P~-----~~t~~~ll~a~ 684 (953)
..|++++|...|.+... .+ ..+|+.+...|...|++++|+..|++..+. ...|+ ..++..+..+|
T Consensus 127 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y 206 (293)
T 2qfc_A 127 KKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKAL 206 (293)
T ss_dssp TSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHH
Confidence 77888888888776531 11 347888888888888888888888887731 01222 25777888888
Q ss_pred HhcCCHHHHHHHHHHHHHhc---CCCCC-hhHHHHHHHHHhhcCCHHHH-HHHHHh
Q 037236 685 NHAGLVENGLKYFSQMQKLH---AVKPK-LEHYACVVDMLGRAGKLDDA-FKLIIE 735 (953)
Q Consensus 685 ~~~g~~~~a~~~~~~m~~~~---~~~p~-~~~~~~lv~~l~~~g~~~eA-~~~~~~ 735 (953)
...|++++|..++++..+.. +..+. ...|..+..+|.+.|++++| ...+++
T Consensus 207 ~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 207 YLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 88888888888888876532 11111 45667777777888888777 665655
No 145
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.33 E-value=5.4e-05 Score=79.29 Aligned_cols=190 Identities=10% Similarity=0.025 Sum_probs=114.7
Q ss_pred hHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcC--CHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCC-hHHHHHHH
Q 037236 589 LRLGKETHCYALKAILTNDAFVACSIIDMYAKCG--CLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGY-GKEAIELF 662 (953)
Q Consensus 589 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g--~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~-~~~A~~l~ 662 (953)
+++...+.+.+...... +..+|+.-...+.+.| .++++...++.+. ++|..+|+--.-.+...|. .+++++.+
T Consensus 90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 34455555555544332 5555665555666666 3677777777765 4567777776666666776 47777777
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhc---
Q 037236 663 EKMLALGHKP-DTFTFVGILMACNHA--------------GLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRA--- 723 (953)
Q Consensus 663 ~~m~~~g~~P-~~~t~~~ll~a~~~~--------------g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~--- 723 (953)
+++++ ..| |...|+.....+.+. +.++++++++...+. +.|+ ...|+.+-.++.+.
T Consensus 169 ~~~I~--~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~---~~P~d~SaW~Y~r~ll~~~~~~ 243 (331)
T 3dss_A 169 DSLIT--RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF---TDPNDQSAWFYHRWLLGAGSGR 243 (331)
T ss_dssp HHHHH--HCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHSSSCG
T ss_pred HHHHH--HCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhccCc
Confidence 77777 355 556666555555444 446777777777765 3454 55555554445444
Q ss_pred --------CCHHHHHHHHHhCCC-CCChhHHHHHHHHHH-----hcCChhHHHHHHHHHhccCCCCcchHHHHHHH
Q 037236 724 --------GKLDDAFKLIIEMPE-EADAGIWSSLLRSCR-----TYGALKMGEKVAKTLLELEPDKAENYVLVSNI 785 (953)
Q Consensus 724 --------g~~~eA~~~~~~~~~-~~~~~~~~~ll~~~~-----~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 785 (953)
+.++++++.++++.. .||. .|..+..+.. ..|..+.....+.++.++||...+.|..|..-
T Consensus 244 ~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 244 CELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 318 (331)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 456777777766653 4553 4543333221 24556677777777777777777766655443
No 146
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.32 E-value=0.0004 Score=78.31 Aligned_cols=201 Identities=10% Similarity=-0.037 Sum_probs=92.9
Q ss_pred HHHHHHHHhhhCCCCCCcchHHHHHHhhccccccchhhHHHHHHHHhCCCCchhhHhhHHHHHHhcCChhHH-HHHHHhc
Q 037236 455 KALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSA-RVLFDEM 533 (953)
Q Consensus 455 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A-~~~f~~~ 533 (953)
.+..+|++++... +.+...|...+.-+...|+.+.|..+++..++. +.+...+. .|+.....++. ..+.+..
T Consensus 197 Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~~~~l~~~~ 269 (493)
T 2uy1_A 197 RMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAVYGDLKRKY 269 (493)
T ss_dssp HHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHHHHHHHHHT
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHHHHHHHHHH
Confidence 3455666665532 233444554555555566666777777766666 22222221 12222111111 1111110
Q ss_pred c------------cCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhcccc-chHHHHHHHHHHH
Q 037236 534 E------------DKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLS-ALRLGKETHCYAL 600 (953)
Q Consensus 534 ~------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~-~~~~a~~~~~~~~ 600 (953)
. ......|...+..+.+.+..+.|..+|.+. .. ..++...|......-...+ +.+.|+.+++...
T Consensus 270 ~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al 347 (493)
T 2uy1_A 270 SMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGL 347 (493)
T ss_dssp C----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 0 001134555555555556666777777666 21 1112222211110001112 4666666666665
Q ss_pred HcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 037236 601 KAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKML 666 (953)
Q Consensus 601 ~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 666 (953)
+... .++..+...++...+.|+.+.|..+|+++. +....|...+.--..+|+.+.+.++++++.
T Consensus 348 ~~~~-~~~~~~~~yid~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 348 LKHP-DSTLLKEEFFLFLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5421 123344445565566666666666666653 244555555555555566555555555554
No 147
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.30 E-value=1e-05 Score=79.34 Aligned_cols=151 Identities=13% Similarity=-0.000 Sum_probs=85.3
Q ss_pred hcCCHHHHHH---HhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHH
Q 037236 620 KCGCLEQSRR---VFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLAL----GHKP-DTFTFVGILMACNHAGLVE 691 (953)
Q Consensus 620 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~P-~~~t~~~ll~a~~~~g~~~ 691 (953)
..|++++|.+ .+..-+......+..+...|...|++++|+..|++.++. |..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4577777777 554433345567777777778888888888888776652 1122 3455667777777788888
Q ss_pred HHHHHHHHHHHhcCCCC-C----hhHHHHHHHHHhhcCCHHHHHHHHHhCCC----CCC----hhHHHHHHHHHHhcCCh
Q 037236 692 NGLKYFSQMQKLHAVKP-K----LEHYACVVDMLGRAGKLDDAFKLIIEMPE----EAD----AGIWSSLLRSCRTYGAL 758 (953)
Q Consensus 692 ~a~~~~~~m~~~~~~~p-~----~~~~~~lv~~l~~~g~~~eA~~~~~~~~~----~~~----~~~~~~ll~~~~~~g~~ 758 (953)
+|..++++..+...-.+ + ...+..+...+...|++++|.+.+++... .++ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 88877777655422122 1 23455566666666666666666655321 111 11233444444444555
Q ss_pred hHHHHHHHHHhc
Q 037236 759 KMGEKVAKTLLE 770 (953)
Q Consensus 759 ~~a~~~~~~~~~ 770 (953)
+.|...++++++
T Consensus 164 ~~A~~~~~~al~ 175 (203)
T 3gw4_A 164 LEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555444444443
No 148
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.29 E-value=6.2e-06 Score=72.40 Aligned_cols=107 Identities=12% Similarity=0.102 Sum_probs=60.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHH
Q 037236 677 FVGILMACNHAGLVENGLKYFSQMQKLHAVKP-KLEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCR 753 (953)
Q Consensus 677 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~ 753 (953)
+..+...+...|++++|...|+...+. .| +...+..+...+.+.|++++|.+.+++... +.+...|..+...+.
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 334444444444444444444444331 22 233444444445555555555554444321 234556677777777
Q ss_pred hcCChhHHHHHHHHHhccCCCCcchHHHHHHHH
Q 037236 754 TYGALKMGEKVAKTLLELEPDKAENYVLVSNIY 786 (953)
Q Consensus 754 ~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 786 (953)
..|+++.|...++++++++|+++..+..++.+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 777888888888888888888877777666554
No 149
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.29 E-value=3.7e-06 Score=75.39 Aligned_cols=107 Identities=10% Similarity=-0.059 Sum_probs=58.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHH
Q 037236 677 FVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCR 753 (953)
Q Consensus 677 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~ 753 (953)
+..+...+...|++++|...|++.++ +.|+ ...|..+..+|.+.|++++|++.+++... +.++..|..+..++.
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIK---RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 33344444444444444444444433 1222 34444444444445555555444444322 234556666666777
Q ss_pred hcCChhHHHHHHHHHhccC------CCCcchHHHHHHHH
Q 037236 754 TYGALKMGEKVAKTLLELE------PDKAENYVLVSNIY 786 (953)
Q Consensus 754 ~~g~~~~a~~~~~~~~~l~------p~~~~~~~~l~~~y 786 (953)
..|+++.|...++++++++ |+++.....+..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 7777777777777777777 77776666665544
No 150
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.28 E-value=1.3e-06 Score=77.74 Aligned_cols=93 Identities=8% Similarity=-0.083 Sum_probs=78.3
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhc
Q 037236 712 HYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGS 789 (953)
Q Consensus 712 ~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 789 (953)
.+..+...+.+.|++++|+..+++... +.++..|..+..++...|+.+.|+..++++++++|+++.++..|+.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 455567778888888888888887653 346778888888899999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHH
Q 037236 790 EKWDDVRMMRQRMKE 804 (953)
Q Consensus 790 g~~~~a~~~~~~m~~ 804 (953)
|++++|...++...+
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999998776654
No 151
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.28 E-value=4.4e-06 Score=76.06 Aligned_cols=95 Identities=12% Similarity=-0.020 Sum_probs=71.9
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 037236 710 LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYA 787 (953)
Q Consensus 710 ~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 787 (953)
...+..+...+.+.|++++|++.+++... +.++.+|..+...+...|+++.|...++++++++|+++.++..++.+|.
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 88 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 88 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 45555666666666666666666655432 3346677788888888888888888888888899999999999999999
Q ss_pred hcCCchHHHHHHHHHHH
Q 037236 788 GSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 788 ~~g~~~~a~~~~~~m~~ 804 (953)
..|++++|...++...+
T Consensus 89 ~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 89 EMESYDEAIANLQRAYS 105 (137)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 99999999887776654
No 152
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.28 E-value=8.3e-06 Score=76.96 Aligned_cols=89 Identities=9% Similarity=-0.009 Sum_probs=43.4
Q ss_pred HHHHHHHHhcCCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc
Q 037236 612 CSIIDMYAKCGCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHA 687 (953)
Q Consensus 612 ~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~ 687 (953)
..+...|...|++++|...|++.. +.+...|..+...+...|++++|++.|++..+. .| +..++..+..++...
T Consensus 17 ~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~ 94 (166)
T 1a17_A 17 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMAL 94 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHh
Confidence 334444455555555555555433 234444555555555555555555555555542 23 334444445555555
Q ss_pred CCHHHHHHHHHHHHH
Q 037236 688 GLVENGLKYFSQMQK 702 (953)
Q Consensus 688 g~~~~a~~~~~~m~~ 702 (953)
|++++|..+|+++.+
T Consensus 95 ~~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 95 GKFRAALRDYETVVK 109 (166)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 555555555555443
No 153
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.27 E-value=4.5e-06 Score=78.95 Aligned_cols=109 Identities=10% Similarity=-0.010 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHH
Q 037236 674 TFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLR 750 (953)
Q Consensus 674 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~ 750 (953)
...+..+...+...|++++|+.+|++.++ +.|+ ...|..+..+|.+.|++++|++.+++... +.+...|..+..
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALS---IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34455555556666666666666666554 2332 45556666666666666666666655432 335677888888
Q ss_pred HHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHH
Q 037236 751 SCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNI 785 (953)
Q Consensus 751 ~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 785 (953)
++...|+++.|...++++++++|+++..+...+..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 88889999999999999999999999876655443
No 154
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.26 E-value=2.9e-06 Score=76.21 Aligned_cols=93 Identities=5% Similarity=-0.042 Sum_probs=68.8
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcc-------hHHHH
Q 037236 712 HYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAE-------NYVLV 782 (953)
Q Consensus 712 ~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~-------~~~~l 782 (953)
.+..+...+.+.|++++|++.|++... +.++.+|..+..++...|+++.|...++++++++|++.. +|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 344556666666666666666665432 335667888888888888888888888888888887654 67778
Q ss_pred HHHHHhcCCchHHHHHHHHHHH
Q 037236 783 SNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 783 ~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
+++|...|++++|.+.+++..+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 8999999999999998776544
No 155
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.26 E-value=3.1e-06 Score=73.60 Aligned_cols=95 Identities=11% Similarity=0.086 Sum_probs=68.6
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCC--CcchHHHHHHH
Q 037236 710 LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPD--KAENYVLVSNI 785 (953)
Q Consensus 710 ~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~--~~~~~~~l~~~ 785 (953)
...+..+...+.+.|++++|...+++... +.+..+|..+...+...|+++.|...+++++++.|+ ++..+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 44455566666666666666666665432 335667777777777788888888888888888888 88888888888
Q ss_pred HHhc-CCchHHHHHHHHHHH
Q 037236 786 YAGS-EKWDDVRMMRQRMKE 804 (953)
Q Consensus 786 y~~~-g~~~~a~~~~~~m~~ 804 (953)
|... |++++|.+.++....
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHhCCHHHHHHHHHHHhh
Confidence 8888 888888887766654
No 156
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.25 E-value=3.7e-06 Score=79.51 Aligned_cols=95 Identities=8% Similarity=0.030 Sum_probs=87.0
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 037236 710 LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYA 787 (953)
Q Consensus 710 ~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 787 (953)
...+..+...+.+.|++++|++.|++... +.+..+|..+...+...|+++.|...++++++++|+++.+|..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 56788889999999999999999988754 3478899999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHH
Q 037236 788 GSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 788 ~~g~~~~a~~~~~~m~~ 804 (953)
..|++++|...+++..+
T Consensus 91 ~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 99999999998887765
No 157
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.24 E-value=5.9e-06 Score=72.54 Aligned_cols=95 Identities=12% Similarity=0.132 Sum_probs=86.0
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 037236 710 LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYA 787 (953)
Q Consensus 710 ~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 787 (953)
...+..++..+...|++++|.+.+++... +.++..|..+...+...|+++.|...++++++++|+++..+..++.+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 45677788999999999999999988753 4478889999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHH
Q 037236 788 GSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 788 ~~g~~~~a~~~~~~m~~ 804 (953)
..|++++|...++...+
T Consensus 84 ~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 99999999999887765
No 158
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.24 E-value=2.1e-05 Score=77.14 Aligned_cols=155 Identities=12% Similarity=0.064 Sum_probs=109.5
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHhhhcCC---------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-
Q 037236 607 DAFVACSIIDMYAKCGCLEQSRRVFDRLKD---------KDVTSWNAIIGGHGIHGYGKEAIELFEKMLAL----GHKP- 672 (953)
Q Consensus 607 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~P- 672 (953)
...++..+...|...|++++|...|++... ....++..+...|...|++++|++.+++..+. +-.|
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 104 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPL 104 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHH
Confidence 345666777788888888888888876652 13457888888999999999999999987763 1122
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhHHHH
Q 037236 673 -DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK----LEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSS 747 (953)
Q Consensus 673 -~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~~~~~~~ 747 (953)
....+..+...+...|++++|..++++..+...-.++ ...+..+..++.+.|++++|.+.+++..
T Consensus 105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al---------- 174 (203)
T 3gw4_A 105 AASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR---------- 174 (203)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH----------
Confidence 2345778888999999999999999988653322222 3346788899999999999999887742
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCC
Q 037236 748 LLRSCRTYGALKMGEKVAKTLLELEP 773 (953)
Q Consensus 748 ll~~~~~~g~~~~a~~~~~~~~~l~p 773 (953)
..+...|+......+...+-...|
T Consensus 175 --~~~~~~~~~~~~~~~~~~~~~~~~ 198 (203)
T 3gw4_A 175 --DIFAELEDSEAVNELMTRLNGLEH 198 (203)
T ss_dssp --HHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred --HHHHHcCCHHHHHHHHhcccchhh
Confidence 334455555544445544444444
No 159
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.24 E-value=9.7e-05 Score=77.39 Aligned_cols=176 Identities=11% Similarity=0.048 Sum_probs=133.0
Q ss_pred HHHHHHHhhhcC---CCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC-HHHHHHH
Q 037236 624 LEQSRRVFDRLK---DKDVTSWNAIIGGHGIHG--YGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGL-VENGLKY 696 (953)
Q Consensus 624 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g--~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~-~~~a~~~ 696 (953)
++++...++.+. +++..+|+.-.-.+...| .+++++++++++.+ ..| |...|..-..++.+.|. +++++++
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~--~dprNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLE--ADERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 567788887766 568889998888888888 48999999999999 567 88888888888888888 6999999
Q ss_pred HHHHHHhcCCCCC-hhHHHHHHHHHhhc--------------CCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhc----
Q 037236 697 FSQMQKLHAVKPK-LEHYACVVDMLGRA--------------GKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTY---- 755 (953)
Q Consensus 697 ~~~m~~~~~~~p~-~~~~~~lv~~l~~~--------------g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~---- 755 (953)
++.+++. .|+ ...|+....++.+. +.++++++++.+... +.|...|+-+-+.+...
T Consensus 168 ~~~~I~~---~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 168 TDSLITR---NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHHH---CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHHH---CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcc
Confidence 9999873 454 56666666666554 568899999987753 55788998777776554
Q ss_pred -------CChhHHHHHHHHHhccCCCCcchHHHHHHHHH---hcCCchHHHHHHHHHHH
Q 037236 756 -------GALKMGEKVAKTLLELEPDKAENYVLVSNIYA---GSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 756 -------g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~---~~g~~~~a~~~~~~m~~ 804 (953)
+-++.+...++++++++|++.=++..++.+.. ..|..+++.....++.+
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 35789999999999999998554444433222 35666666666666655
No 160
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.23 E-value=9.7e-06 Score=74.72 Aligned_cols=115 Identities=11% Similarity=-0.027 Sum_probs=71.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHH
Q 037236 638 DVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPD----TFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHY 713 (953)
Q Consensus 638 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~ 713 (953)
+...|..+...+...|++++|++.|++..+ ..|+ ...+..+..++...|++++|...++...+. .
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~------ 95 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK---D------ 95 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---T------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh---C------
Confidence 455566666666666666666666666665 3454 344445555555555555555555554331 1
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 037236 714 ACVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAG 788 (953)
Q Consensus 714 ~~lv~~l~~~g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 788 (953)
+.+...|..+...+...|+++.|...++++++++|+++..+..+..+...
T Consensus 96 -------------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 96 -------------------------GGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp -------------------------SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred -------------------------ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 22455666677777777788888888888888888888777776666543
No 161
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.23 E-value=2.2e-05 Score=90.13 Aligned_cols=168 Identities=10% Similarity=0.037 Sum_probs=141.3
Q ss_pred CCHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc
Q 037236 622 GCLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGY----------GKEAIELFEKMLALGHKP-DTFTFVGILMACNHA 687 (953)
Q Consensus 622 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~ 687 (953)
..-++|.+.++.+. +.+...|+.--..+...|+ ++++++.++++++ ..| +..+|..-..++.+.
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHc
Confidence 34467888888876 4567789887777777777 8999999999999 567 778899988999999
Q ss_pred C--CHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcC-CHHHHHHHHHhCCC--CCChhHHHHHHHHHHhc------
Q 037236 688 G--LVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAG-KLDDAFKLIIEMPE--EADAGIWSSLLRSCRTY------ 755 (953)
Q Consensus 688 g--~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g-~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~------ 755 (953)
| ++++++++++.+.+ +.|. ...|+.-..++.+.| .++++++.++++.. ..|...|+.....+...
T Consensus 121 ~~~~~~~el~~~~k~l~---~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 121 PEPNWARELELCARFLE---ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp SSCCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred ccccHHHHHHHHHHHHh---hccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 9 77999999999987 4555 667777778888889 89999999998865 35788999998887663
Q ss_pred --------CChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchH
Q 037236 756 --------GALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDD 794 (953)
Q Consensus 756 --------g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 794 (953)
+.++++.+.++++++++|+|.+++..+.+++...|+.++
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 457899999999999999999999999999999998665
No 162
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.20 E-value=1.2e-05 Score=71.26 Aligned_cols=95 Identities=21% Similarity=0.295 Sum_probs=86.4
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 037236 710 LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYA 787 (953)
Q Consensus 710 ~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 787 (953)
...+..+...+.+.|++++|.+.++++.. +.+..+|..+...+...|+++.|...++++++..|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 46778889999999999999999988753 4467889999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHH
Q 037236 788 GSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 788 ~~g~~~~a~~~~~~m~~ 804 (953)
..|++++|...++.+.+
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 99999999999887765
No 163
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.19 E-value=6.2e-06 Score=92.59 Aligned_cols=145 Identities=8% Similarity=-0.025 Sum_probs=99.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHH
Q 037236 638 DVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVV 717 (953)
Q Consensus 638 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv 717 (953)
....|..+...|.+.|++++|+..|++.++ +.|+...+ .-++..+ .... ....|..+.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~-----------~~~~~~~-~~~~--------~~~~~~nla 324 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVS--WLEMEYGL-----------SEKESKA-SESF--------LLAAFLNLA 324 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTTCCSC-----------CHHHHHH-HHHH--------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HhcccccC-----------ChHHHHH-HHHH--------HHHHHHHHH
Confidence 445677777888888888888888888877 34432110 0000000 0000 135566777
Q ss_pred HHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHH
Q 037236 718 DMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDV 795 (953)
Q Consensus 718 ~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a 795 (953)
.+|.+.|++++|++.+++... +.+...|..+..++...|+++.|...++++++++|++..++..++.++...|+++++
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777776643 346778888999999999999999999999999999999999999999999999988
Q ss_pred HH-HHHHHHH
Q 037236 796 RM-MRQRMKE 804 (953)
Q Consensus 796 ~~-~~~~m~~ 804 (953)
.+ .++.|-.
T Consensus 405 ~~~~~~~~f~ 414 (457)
T 1kt0_A 405 DRRIYANMFK 414 (457)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHh
Confidence 76 4555543
No 164
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.19 E-value=1.1e-05 Score=72.76 Aligned_cols=95 Identities=14% Similarity=0.112 Sum_probs=86.7
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 037236 710 LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYA 787 (953)
Q Consensus 710 ~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 787 (953)
...+..+...+.+.|++++|.+.+++... +.+..+|..+...+...|+++.|...++++++++|+++.++..++.+|.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 67788899999999999999999988653 3467899999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHH
Q 037236 788 GSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 788 ~~g~~~~a~~~~~~m~~ 804 (953)
..|++++|.+.++...+
T Consensus 96 ~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 99999999998887765
No 165
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.19 E-value=0.00017 Score=75.80 Aligned_cols=226 Identities=11% Similarity=0.024 Sum_probs=155.0
Q ss_pred HhcCChhHHHHHHHhcccC---CcccHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHH
Q 037236 518 MHCEKSSSARVLFDEMEDK---SLVSWNTMIAGYSQNK-LPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGK 593 (953)
Q Consensus 518 ~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 593 (953)
.+.+..++|+++++.+... +...|+.--..+...| .+++++++++.+... .|.
T Consensus 65 ~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~--nPK--------------------- 121 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ--NLK--------------------- 121 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT--TCC---------------------
T ss_pred HhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--CCC---------------------
Confidence 3345567888888887643 4456777777777777 589999999998875 343
Q ss_pred HHHHHHHHcCCCCCccHHHHHHHHHHhc-C-CHHHHHHHhhhcC---CCCHHHHHHHHHHHHhcCChH--------HHHH
Q 037236 594 ETHCYALKAILTNDAFVACSIIDMYAKC-G-CLEQSRRVFDRLK---DKDVTSWNAIIGGHGIHGYGK--------EAIE 660 (953)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~li~~y~~~-g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~--------~A~~ 660 (953)
+..+|+.-...+.+. + +.+++.++++++. .+|..+|+--.-.+.+.|..+ ++++
T Consensus 122 -------------ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe 188 (349)
T 3q7a_A 122 -------------SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELD 188 (349)
T ss_dssp -------------CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred -------------cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHH
Confidence 233344333444444 4 6678888888777 456677776665555555555 8999
Q ss_pred HHHHHHHCCCCC-CHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCH-----
Q 037236 661 LFEKMLALGHKP-DTFTFVGILMACNHAGL-------VENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKL----- 726 (953)
Q Consensus 661 l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~-------~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~----- 726 (953)
.++++++. .| |...|+.....+.+.+. +++++++++.++. +.|+ ...|+.+-.++.+.|+-
T Consensus 189 ~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~---~~P~n~SaW~Ylr~Ll~~~~~~~~~~~ 263 (349)
T 3q7a_A 189 WCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIH---LIPHNVSAWNYLRGFLKHFSLPLVPIL 263 (349)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCCSGGGH
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCCCccccc
Confidence 99999984 56 77788888888877776 6888888888876 4565 66677776677766653
Q ss_pred ---------------HHHHHHHHhCCC--------CCChhHHHHHHHHHHhcCChhHHHHHHHHHh-ccCCCCcchHHHH
Q 037236 727 ---------------DDAFKLIIEMPE--------EADAGIWSSLLRSCRTYGALKMGEKVAKTLL-ELEPDKAENYVLV 782 (953)
Q Consensus 727 ---------------~eA~~~~~~~~~--------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~l~p~~~~~~~~l 782 (953)
.+..++...+.. .+.+..+.-|+..|...|+.+.|.++++.+. +.+|-....+...
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~ 343 (349)
T 3q7a_A 264 PAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFR 343 (349)
T ss_dssp HHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred ccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHH
Confidence 444555555432 2567788999999999999999999999987 6788766665544
Q ss_pred HH
Q 037236 783 SN 784 (953)
Q Consensus 783 ~~ 784 (953)
+.
T Consensus 344 ~~ 345 (349)
T 3q7a_A 344 RR 345 (349)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 166
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.18 E-value=8.8e-06 Score=76.70 Aligned_cols=131 Identities=9% Similarity=0.060 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC-----CCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhHHHHH
Q 037236 674 TFTFVGILMACNHAGLVENGLKYFSQMQKLHA-----VKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSSL 748 (953)
Q Consensus 674 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-----~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~~~~~~~l 748 (953)
...+......+...|++++|+..|+..++... -.|+...+ .-+ .+.+..+|..+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~-----------------~~~----~~~~~~~~~nl 69 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW-----------------VEL----DRKNIPLYANM 69 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH-----------------HHH----HHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH-----------------HHH----HHHHHHHHHHH
Confidence 34566777777778888888887777755210 01111000 000 02234678888
Q ss_pred HHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCccCCceeEEEeCCEEEEEeeC
Q 037236 749 LRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKERGLQKEAGCSWIELGGNIHSFVVG 828 (953)
Q Consensus 749 l~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~ 828 (953)
..++...|+++.|...++++++++|+++.+|..++.+|...|++++|...+++..+
T Consensus 70 a~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~------------------------ 125 (162)
T 3rkv_A 70 SQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR------------------------ 125 (162)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------------
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh------------------------
Confidence 88889999999999999999999999999999999999999999999998877665
Q ss_pred CCCCccHH-HHHHHHHHHHHHHHh
Q 037236 829 DNMHPEWE-EIRGMWGRLEEQISK 851 (953)
Q Consensus 829 d~~hp~~~-~i~~~l~~l~~~~~~ 851 (953)
..|... .+...|..+...+++
T Consensus 126 --l~p~~~~~~~~~l~~~~~~~~~ 147 (162)
T 3rkv_A 126 --NHPAAASVVAREMKIVTERRAE 147 (162)
T ss_dssp --HCGGGHHHHHHHHHHHHHHHHH
T ss_pred --cCCCCHHHHHHHHHHHHHHHHH
Confidence 245544 566667666666553
No 167
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.17 E-value=1.8e-05 Score=70.88 Aligned_cols=116 Identities=13% Similarity=0.075 Sum_probs=76.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHH
Q 037236 638 DVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYAC 715 (953)
Q Consensus 638 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ 715 (953)
+...|..+...+...|++++|+..|++.... .| +...+..+...+...|++++|..+++...+. .|+ ...+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~ 85 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI---DPAYSKAYGR 85 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc---CccCHHHHHH
Confidence 3445666666777777777777777777763 44 5566667777777777777777777777653 343 566677
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCCh
Q 037236 716 VVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGAL 758 (953)
Q Consensus 716 lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~ 758 (953)
+..++.+.|++++|.+.+++... +.+...|..+...+...|++
T Consensus 86 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 86 MGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 77777777777777777766532 23556666666666666553
No 168
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.17 E-value=2.5e-06 Score=78.09 Aligned_cols=34 Identities=12% Similarity=-0.006 Sum_probs=23.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhccCCCCcchH
Q 037236 746 SSLLRSCRTYGALKMGEKVAKTLLELEPDKAENY 779 (953)
Q Consensus 746 ~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~ 779 (953)
.....++...|++++|...++++++++|+|.+.+
T Consensus 106 ~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~ 139 (159)
T 2hr2_A 106 YSRALALDGLGRGAEAMPEFKKVVEMIEERKGET 139 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCC
T ss_pred HhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 6666666677777777777777777777666543
No 169
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.16 E-value=7.5e-06 Score=85.30 Aligned_cols=149 Identities=9% Similarity=-0.008 Sum_probs=111.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHH
Q 037236 638 DVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYAC 715 (953)
Q Consensus 638 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ 715 (953)
+...|..+...+...|++++|+..|++.++ ..| +...+..+..++...|++++|...++.+++ +.|+ ...+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~ 77 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALADCRRALE---LDGQSVKAHFF 77 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SCTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCCHHHHHH
Confidence 456788888999999999999999999998 467 678888999999999999999999998865 5676 778889
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCC-CCC------hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 037236 716 VVDMLGRAGKLDDAFKLIIEMPE-EAD------AGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAG 788 (953)
Q Consensus 716 lv~~l~~~g~~~eA~~~~~~~~~-~~~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 788 (953)
+..+|.+.|++++|++.+++... .|+ ..+|..+. . ..+....+......|.++.....++.++
T Consensus 78 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~-----~---~~~~~~~~~~~~~~~~~~~i~~~l~~l~-- 147 (281)
T 2c2l_A 78 LGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR-----I---AKKKRWNSIEERRIHQESELHSYLTRLI-- 147 (281)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH-----H---HHHHHHHHHHHTCCCCCCHHHHHHHHHH--
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH-----H---HHHHHHHHHHHHHHhhhHHHHHHHHHHH--
Confidence 99999999999999999987642 121 22333221 1 1222333333356778888877887765
Q ss_pred cCCchHHHHHHHH
Q 037236 789 SEKWDDVRMMRQR 801 (953)
Q Consensus 789 ~g~~~~a~~~~~~ 801 (953)
.|++++|.+.++.
T Consensus 148 ~~~~~~A~~~~~~ 160 (281)
T 2c2l_A 148 AAERERELEECQR 160 (281)
T ss_dssp HHHHHHHHTTTSG
T ss_pred HHHHHHHHHHHHh
Confidence 5778877765543
No 170
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.14 E-value=1.7e-05 Score=71.12 Aligned_cols=61 Identities=5% Similarity=-0.015 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037236 640 TSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQK 702 (953)
Q Consensus 640 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 702 (953)
..|..+...+.+.|++++|++.|++.++ +.| +..+|..+..+|...|++++|+..|+..++
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3566677777777777777777777777 456 456677777777777777777777777655
No 171
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.12 E-value=3.6e-06 Score=82.53 Aligned_cols=143 Identities=10% Similarity=0.008 Sum_probs=93.4
Q ss_pred HhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCCH----------------HHH
Q 037236 582 ACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK---DKDV----------------TSW 642 (953)
Q Consensus 582 a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~----------------~~~ 642 (953)
....++.++.+++.++........ ....+..+...|.+.|++++|...|++.. +.+. ..|
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEKVQ-SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp ---------CCCSGGGCCHHHHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhhccccCchhhCCHHHHHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 344556666666665433221111 34556778889999999999999999875 2232 677
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHH
Q 037236 643 NAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDML 720 (953)
Q Consensus 643 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l 720 (953)
..+..+|...|++++|+..+++.++. .| +...+..+..++...|++++|...|+...+ +.|+ ...+..+..++
T Consensus 92 ~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 92 LNLATCYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKAAS---LNPNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH---HCCCcHHHHHHHHHHH
Confidence 77888888888888888888888873 55 566777788888888888888888887765 3454 55566666666
Q ss_pred hhcCCHHHHH
Q 037236 721 GRAGKLDDAF 730 (953)
Q Consensus 721 ~~~g~~~eA~ 730 (953)
.+.|+.+++.
T Consensus 167 ~~~~~~~~~~ 176 (198)
T 2fbn_A 167 NKLKEARKKD 176 (198)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHH
Confidence 6666665555
No 172
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.12 E-value=2.2e-05 Score=72.30 Aligned_cols=95 Identities=14% Similarity=0.060 Sum_probs=79.2
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCC----hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHH
Q 037236 710 LEHYACVVDMLGRAGKLDDAFKLIIEMPE-EAD----AGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSN 784 (953)
Q Consensus 710 ~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 784 (953)
...+..+...+.+.|++++|.+.+++... .|+ ..+|..+...+...|+++.|...++++++++|+++..+..++.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 45566666777777777777777766543 454 5778888888999999999999999999999999999999999
Q ss_pred HHHhcCCchHHHHHHHHHHH
Q 037236 785 IYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 785 ~y~~~g~~~~a~~~~~~m~~ 804 (953)
+|...|++++|...++...+
T Consensus 108 ~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 99999999999998887765
No 173
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.11 E-value=9.1e-06 Score=73.91 Aligned_cols=99 Identities=6% Similarity=-0.118 Sum_probs=55.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHH
Q 037236 673 DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLL 749 (953)
Q Consensus 673 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll 749 (953)
+...+..+...+...|++++|...|+..++. .|+ ...|..+..+|.+.|++++|.+.+++... +.++..|..+.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 3444555555555555555555555555442 232 44455555555555555555555544432 23455666666
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCC
Q 037236 750 RSCRTYGALKMGEKVAKTLLELEPD 774 (953)
Q Consensus 750 ~~~~~~g~~~~a~~~~~~~~~l~p~ 774 (953)
..+...|+++.|...++++++++|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChh
Confidence 6777777777777777777777766
No 174
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.10 E-value=1.4e-05 Score=85.60 Aligned_cols=124 Identities=15% Similarity=0.003 Sum_probs=97.0
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHhhhcC--CC-C---------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 037236 607 DAFVACSIIDMYAKCGCLEQSRRVFDRLK--DK-D---------------VTSWNAIIGGHGIHGYGKEAIELFEKMLAL 668 (953)
Q Consensus 607 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~-~---------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 668 (953)
+...+..+...|.+.|++++|...|++.. .| + ...|..+..+|...|++++|+..|++.++
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~- 224 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE- 224 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 56678889999999999999999999876 23 3 47888888888888888888888888888
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHH-HHHHh
Q 037236 669 GHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAF-KLIIE 735 (953)
Q Consensus 669 g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~-~~~~~ 735 (953)
+.| +...+..+..++...|++++|+..|+++++ +.|+ ...+..+..++.+.|+.++|. +++++
T Consensus 225 -~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~ 290 (336)
T 1p5q_A 225 -LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ---LYPNNKAAKTQLAVCQQRIRRQLAREKKLYAN 290 (336)
T ss_dssp -HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456 667788888888888888888888888876 4454 566677777777777777773 34444
No 175
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.10 E-value=2.8e-06 Score=77.79 Aligned_cols=108 Identities=13% Similarity=0.065 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHh
Q 037236 675 FTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSCRT 754 (953)
Q Consensus 675 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~~ 754 (953)
..+......+...|++++|+..|++.++..+-.|+.. +... .+.+...|..+..++..
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~-----------------a~~~-----~~~~a~a~~n~g~al~~ 69 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEE-----------------AFDH-----AGFDAFCHAGLAEALAG 69 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTS-----------------CCCH-----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchh-----------------hhhh-----ccchHHHHHHHHHHHHH
Confidence 4466677777888888888888888876332222210 0000 00123478888888888
Q ss_pred cCChhHHHHHHHHHhcc-------CCCCcchH----HHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 755 YGALKMGEKVAKTLLEL-------EPDKAENY----VLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 755 ~g~~~~a~~~~~~~~~l-------~p~~~~~~----~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
.|++++|...+++++++ +|+++.+| ..++.++...|++++|+..+++..+
T Consensus 70 Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 70 LRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 88888888888888888 99999999 9999999999999999998877754
No 176
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.09 E-value=1.3e-05 Score=72.04 Aligned_cols=89 Identities=19% Similarity=0.151 Sum_probs=58.2
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCC-CCC-h---hHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC---cchHHHHHHHHH
Q 037236 716 VVDMLGRAGKLDDAFKLIIEMPE-EAD-A---GIWSSLLRSCRTYGALKMGEKVAKTLLELEPDK---AENYVLVSNIYA 787 (953)
Q Consensus 716 lv~~l~~~g~~~eA~~~~~~~~~-~~~-~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~---~~~~~~l~~~y~ 787 (953)
+...+.+.|++++|.+.+++... .|+ . ..|..+...+...|+++.|...++++++..|++ +.++..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 44455556666666665554432 222 2 356666666777777777777777777777777 666777777777
Q ss_pred hcCCchHHHHHHHHHHH
Q 037236 788 GSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 788 ~~g~~~~a~~~~~~m~~ 804 (953)
..|++++|...++.+.+
T Consensus 88 ~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 77777777777666654
No 177
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.09 E-value=4.2e-06 Score=78.94 Aligned_cols=124 Identities=19% Similarity=0.106 Sum_probs=84.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-h
Q 037236 638 DVTSWNAIIGGHGIHGYGKEAIELFEKMLALG------HKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-L 710 (953)
Q Consensus 638 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g------~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~ 710 (953)
....|......+.+.|++++|+..|++.+..- -.|+...+ .. +.|. .
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~--------------------~~------~~~~~~ 63 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW--------------------VE------LDRKNI 63 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH--------------------HH------HHHTHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH--------------------HH------HHHHHH
Confidence 35578888999999999999999999998830 01211100 00 1122 3
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc-chHHHHHHHHH
Q 037236 711 EHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKA-ENYVLVSNIYA 787 (953)
Q Consensus 711 ~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~-~~~~~l~~~y~ 787 (953)
..|..+..+|.+.|++++|+..+++... +.++..|..++.++...|+++.|...++++++++|+++ .....|..+..
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~ 143 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTE 143 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 4555666666666666666666655432 34566788888888888899999999999999999888 55555555444
No 178
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.07 E-value=1.4e-05 Score=69.28 Aligned_cols=98 Identities=12% Similarity=0.103 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CC--ChhHHHHHHH
Q 037236 676 TFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EA--DAGIWSSLLR 750 (953)
Q Consensus 676 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~--~~~~~~~ll~ 750 (953)
.+..+...+...|++++|..+|+++.+. .|+ ...+..+..++.+.|++++|.+.+++... +. +..+|..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL---DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 3444444455555555555555555432 222 34444555555555555555555544322 22 4556666777
Q ss_pred HHHhc-CChhHHHHHHHHHhccCCCCc
Q 037236 751 SCRTY-GALKMGEKVAKTLLELEPDKA 776 (953)
Q Consensus 751 ~~~~~-g~~~~a~~~~~~~~~l~p~~~ 776 (953)
.+... |+++.|...++++++..|+++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 77777 777777777777777777654
No 179
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.07 E-value=1.1e-05 Score=71.54 Aligned_cols=97 Identities=10% Similarity=0.006 Sum_probs=54.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-C-CChhHHHHHHHHHH
Q 037236 677 FVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE-E-ADAGIWSSLLRSCR 753 (953)
Q Consensus 677 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~-~~~~~~~~ll~~~~ 753 (953)
+..+...+...|++++|+..|+..++ ..|+ ...|..+..++.+.|++++|+..+++... . .+...|..+..++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQ---KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 33444555556666666666665554 2343 45555555566666666666666555432 2 34556667777777
Q ss_pred hcCChhHHHHHHHHHhccCCCCc
Q 037236 754 TYGALKMGEKVAKTLLELEPDKA 776 (953)
Q Consensus 754 ~~g~~~~a~~~~~~~~~l~p~~~ 776 (953)
..|+++.|...++++++++|+++
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHC------
T ss_pred HcCCHHHHHHHHHHHHHhCcCCC
Confidence 77777777777777887777654
No 180
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.02 E-value=2.2e-05 Score=70.29 Aligned_cols=93 Identities=14% Similarity=0.143 Sum_probs=69.2
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC-------cchHHHH
Q 037236 712 HYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDK-------AENYVLV 782 (953)
Q Consensus 712 ~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~-------~~~~~~l 782 (953)
.+..+...+...|++++|.+.+++... +.++.+|..+...+...|+++.|...+++++++.|++ +.++..+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 445555566666666666666655432 3355667777777777888888888888888887766 7788999
Q ss_pred HHHHHhcCCchHHHHHHHHHHH
Q 037236 783 SNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 783 ~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
+.+|...|++++|...++...+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 9999999999999998887766
No 181
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.99 E-value=1.7e-05 Score=85.05 Aligned_cols=146 Identities=10% Similarity=0.005 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 037236 639 VTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVD 718 (953)
Q Consensus 639 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~ 718 (953)
...|..+...+...|++++|+..|++.+. ..|+... +...|+.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 34566778888889999999999999887 4665442 223344444433221 135677777
Q ss_pred HHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHH-HhcCCchHH
Q 037236 719 MLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIY-AGSEKWDDV 795 (953)
Q Consensus 719 ~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y-~~~g~~~~a 795 (953)
+|.+.|++++|++.+++... +.+...|..+..++...|+++.|...++++++++|+++.++..|+.+. ...+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888776643 345678888888888888888888888888888888888888888874 445666667
Q ss_pred HHHHHHHHH
Q 037236 796 RMMRQRMKE 804 (953)
Q Consensus 796 ~~~~~~m~~ 804 (953)
.+.++.|-.
T Consensus 319 ~~~~~~~l~ 327 (338)
T 2if4_A 319 KEMYKGIFK 327 (338)
T ss_dssp ---------
T ss_pred HHHHHHhhC
Confidence 777766644
No 182
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.98 E-value=2e-05 Score=85.55 Aligned_cols=137 Identities=12% Similarity=0.033 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHH
Q 037236 639 VTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVV 717 (953)
Q Consensus 639 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv 717 (953)
...|..+...+...|++++|++.|++.++. .|+.. .....+++ ..+.|. ...|..+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~~~----------~~~~~~~~~~~~nla 280 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDADG----------AKLQPVALSCVLNIG 280 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHHHH----------GGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChHHH----------HHHHHHHHHHHHHHH
Confidence 345777777777888888888888777662 11110 00011111 012233 56777888
Q ss_pred HHHhhcCCHHHHHHHHHhCCC-C-CChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHH
Q 037236 718 DMLGRAGKLDDAFKLIIEMPE-E-ADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDV 795 (953)
Q Consensus 718 ~~l~~~g~~~eA~~~~~~~~~-~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a 795 (953)
.+|.+.|++++|++.+++... . .++..|..+..++...|+++.|...++++++++|++..++..++.++...++.+++
T Consensus 281 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 281 ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 888888999999888887654 3 45778899999999999999999999999999999999999999999999888877
Q ss_pred HH
Q 037236 796 RM 797 (953)
Q Consensus 796 ~~ 797 (953)
.+
T Consensus 361 ~k 362 (370)
T 1ihg_A 361 EK 362 (370)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 183
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.97 E-value=2.4e-05 Score=70.05 Aligned_cols=114 Identities=9% Similarity=-0.032 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 037236 640 TSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVD 718 (953)
Q Consensus 640 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~ 718 (953)
..|..+...+...|++++|+..|++..+. .| +...+..+...+...|++++|..+++.+.+...-.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~----------- 71 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN----------- 71 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS-----------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc-----------
Confidence 45556666666666666666666666663 33 44555666666666666666666666654422110
Q ss_pred HHhhcCCHHHHHHHHHhCCCCCC----hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 037236 719 MLGRAGKLDDAFKLIIEMPEEAD----AGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYA 787 (953)
Q Consensus 719 ~l~~~g~~~eA~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 787 (953)
.++ ..+|..+...+...|+++.|...+++++++.| ++.....+..++.
T Consensus 72 --------------------~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 72 --------------------REDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp --------------------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred --------------------chhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 011 34555666666667777777777777777776 4555555555443
No 184
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.96 E-value=8.5e-05 Score=66.42 Aligned_cols=105 Identities=10% Similarity=-0.008 Sum_probs=54.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCC----hhHHHHHHHHHHhc
Q 037236 682 MACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE-EAD----AGIWSSLLRSCRTY 755 (953)
Q Consensus 682 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~~----~~~~~~ll~~~~~~ 755 (953)
..+...|++++|...|+.+.+..+-.|. ...+..+..++.+.|++++|.+.+++... .|+ +.++..+...+...
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~ 89 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGE 89 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHc
Confidence 3444444555555554444432211111 12344444455555555555555444321 122 34556666667777
Q ss_pred CChhHHHHHHHHHhccCCCCcchHHHHHHHH
Q 037236 756 GALKMGEKVAKTLLELEPDKAENYVLVSNIY 786 (953)
Q Consensus 756 g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 786 (953)
|+++.|...++++++..|+++........+-
T Consensus 90 g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~ 120 (129)
T 2xev_A 90 GKNTEAQQTLQQVATQYPGSDAARVAQERLQ 120 (129)
T ss_dssp TCHHHHHHHHHHHHHHSTTSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 7777777777778888887776555444443
No 185
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.93 E-value=4.6e-05 Score=71.10 Aligned_cols=136 Identities=13% Similarity=0.130 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHH
Q 037236 640 TSWNAIIGGHGIHGYGKEAIELFEKMLALGHK-PD----TFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYA 714 (953)
Q Consensus 640 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-P~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 714 (953)
.++..+...|...|++++|+..+++.++.... ++ ..++..+...+...|++++|..+++...+...-.++..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~--- 86 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA--- 86 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH---
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH---
Confidence 35666666777777777777777776652100 11 13455666666666777777766666544221111100
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCC------CCcchHHHHHHHHHh
Q 037236 715 CVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEP------DKAENYVLVSNIYAG 788 (953)
Q Consensus 715 ~lv~~l~~~g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p------~~~~~~~~l~~~y~~ 788 (953)
....++..+...+...|+++.|...+++++++.+ ..+..+..++.+|..
T Consensus 87 -------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 141 (164)
T 3ro3_A 87 -------------------------VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA 141 (164)
T ss_dssp -------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -------------------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHH
Confidence 0022334444444455555555555555544321 124466778888888
Q ss_pred cCCchHHHHHHHHHH
Q 037236 789 SEKWDDVRMMRQRMK 803 (953)
Q Consensus 789 ~g~~~~a~~~~~~m~ 803 (953)
.|++++|.+.+++..
T Consensus 142 ~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 142 LGNHDQAMHFAEKHL 156 (164)
T ss_dssp HTCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHH
Confidence 888888888766553
No 186
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.91 E-value=1.4e-05 Score=85.80 Aligned_cols=113 Identities=9% Similarity=-0.073 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHh
Q 037236 675 FTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSCRT 754 (953)
Q Consensus 675 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~~ 754 (953)
..+..+...+...|++++|...|++.++ +.|+.. .+...|+.+++...+. ..+|..+...+..
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~---~~p~~~-------~~~~~~~~~~~~~~l~-------~~~~~nla~~~~~ 242 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIA---YMGDDF-------MFQLYGKYQDMALAVK-------NPCHLNIAACLIK 242 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHH---HSCHHH-------HHTCCHHHHHHHHHHH-------THHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH---Hhccch-------hhhhcccHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 4566778888999999999999999876 345422 2344556666655443 2478889999999
Q ss_pred cCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 755 YGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 755 ~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
.|+++.|...++++++++|+++.+|..++.+|...|++++|...+++..+
T Consensus 243 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 243 LKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp TTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998876643
No 187
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.89 E-value=8e-06 Score=72.07 Aligned_cols=82 Identities=13% Similarity=0.095 Sum_probs=53.2
Q ss_pred cCCHHHHHHHHHhCCCC----C-ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHH
Q 037236 723 AGKLDDAFKLIIEMPEE----A-DAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRM 797 (953)
Q Consensus 723 ~g~~~eA~~~~~~~~~~----~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 797 (953)
.|++++|++.+++.... | +..+|..+...+...|+++.|...++++++++|+++.++..++.+|...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 45555555555554322 2 245666677777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHH
Q 037236 798 MRQRMKE 804 (953)
Q Consensus 798 ~~~~m~~ 804 (953)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655543
No 188
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.89 E-value=8.3e-06 Score=86.27 Aligned_cols=463 Identities=11% Similarity=0.036 Sum_probs=276.6
Q ss_pred CCchhhhHHHHHHHhcCChhhHHHHhhcCCCCCchhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcccHHHHHHHh
Q 037236 96 NDFIINTRLITMYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYPDVLSIFVELLSDTELKPDNFTFPCVIKAC 175 (953)
Q Consensus 96 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~ll~~~ 175 (953)
..+.+|+.|..++.+.|.+.+|+..|=+ ..|+..|..+|.+..+.|.+++-+..+...++ . .-++..=+.++-++
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk-~--~ke~~IDteLi~ay 126 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARK-K--ARESYVETELIFAL 126 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTST-T--CCSTTTTHHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH-H--hcccccHHHHHHHH
Confidence 3456788899999999999988776644 45666788899999999999998888776655 3 33344456777788
Q ss_pred hcCCChhhHhHHHHHHHHhCCCCChhHHHHHHHHhhccCChHHHHHHhccCCCCCeecHHHHHHHHHcCCCchHHHHHHH
Q 037236 176 GGIADVSFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGSSENGFSCESFDLLI 255 (953)
Q Consensus 176 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 255 (953)
++.+++.+-.++. -.|+..-...+.+-+...|.++.|.-+|..++. |..|...+++.|++..|.+.-+
T Consensus 127 Ak~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN-----~akLAstLV~L~~yq~AVdaAr 194 (624)
T 3lvg_A 127 AKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGAR 194 (624)
T ss_dssp HTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC-----CTTTSSSSSSCSGGGSSTTTTT
T ss_pred HhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 8887776554432 135555556666777777888888888877764 5555556677777777766555
Q ss_pred HhhhccCCCCCChhhHHHHHHhhhcCCCchHHHHHHHHHHHhCCCCCchHHHHHHHhhHhcCChhHHHHHHhcCC---CC
Q 037236 256 KMMGCEEGFIPDVATVVTVLPVCAGEGNVDLGILVHGLAVKLGLTRELMVNNALVDMYAKCGFLSEAQILFDKNN---NK 332 (953)
Q Consensus 256 ~m~~~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~ 332 (953)
+. -+..||-.+-.+|...+.+..|...--.++-. + .-...|+..|-+.|.+++-..+++... ..
T Consensus 195 KA--------ns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---a--deL~elv~~YE~~G~f~ELIsLlEaglglErA 261 (624)
T 3lvg_A 195 KA--------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---A--DELEELINYYQDRGYFEELITMLEAALGLERA 261 (624)
T ss_dssp TC--------CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---S--SCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTC
T ss_pred hc--------CChhHHHHHHHHHhCchHHHHHHHhcchhccc---H--HHHHHHHHHHHhCCCHHHHHHHHHHHhCCCch
Confidence 44 46678888888999888887775543333321 1 122346778888888888888887533 34
Q ss_pred CcccHHHHHHHHHcCCChhHHHHHHHHHHhccCCCCCchhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCchhHHHHH
Q 037236 333 NVVSWNTIIGAFSMAGDVCGTFDLLRKMQMKEEEMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLRHGFDNDELVANAF 412 (953)
Q Consensus 333 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~l 412 (953)
..-.++-|.-.|++- ++++..+-++.. .+..-...+|++|.+. ..|..+
T Consensus 262 HmGmFTELaILYsKY-~PeKlmEHlklf--------~sriNipKviracE~a----------------------hLW~El 310 (624)
T 3lvg_A 262 HMGMFTELAILYSKF-KPQKMREHLELF--------WSRVNIPKVLRAAEQA----------------------HLWAEL 310 (624)
T ss_dssp CHHHHHHHHHHHHSS-CTTHHHHHHTTS--------SSSSCCTTTHHHHTTT----------------------TCHHHH
T ss_pred hHHHHHHHHHHHHhc-CHHHHHHHHHHH--------HHhccHHHHHHHHHHH----------------------hhHHHH
Confidence 555677776666655 455555444422 1122223456666543 445556
Q ss_pred HHHHHhcCCcccHHHH-------------hccCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHH
Q 037236 413 VVAYAKCGSEISAENV-------------FHGMD--SRTVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGS 477 (953)
Q Consensus 413 i~~y~~~g~~~~A~~~-------------f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 477 (953)
+-.|.+-.++|.|... |.++. -.|+..|-.-|.-|.+. .|. -.+-
T Consensus 311 vfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL~e------------------~P~--lL~D 370 (624)
T 3lvg_A 311 VFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF------------------KPL--LLND 370 (624)
T ss_dssp HHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGGCSCSHHHHHHHHHHTTS------------------CCT--TSHH
T ss_pred HHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHHcchHHHHHHHHHHHHHh------------------ChH--HHHH
Confidence 6666666666655432 11111 11344444444444322 222 2333
Q ss_pred HHHhhccccccchhhHHHHHHHHhCCCCchhhHhhHHHHHHhcCChhHHHHHHHhcccCCcccHH-HHHHHHHhcCChhH
Q 037236 478 LILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMEDKSLVSWN-TMIAGYSQNKLPVE 556 (953)
Q Consensus 478 ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~-~li~~~~~~g~~~~ 556 (953)
+|.++...=|.. ..++++.+.|++.-....+......|...-| ++-..|....+++.
T Consensus 371 LL~vL~prlDh~----------------------RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~ 428 (624)
T 3lvg_A 371 LLMVLSPRLDHT----------------------RAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQA 428 (624)
T ss_dssp HHHHHCTTCCST----------------------TTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHH
T ss_pred HHHhccccCChH----------------------HHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHH
Confidence 443332221111 3445566667766666666666666555433 34455666666543
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcC-
Q 037236 557 AIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLK- 635 (953)
Q Consensus 557 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~- 635 (953)
++.-.+.--.-|...+ |.++ .++. -...-..-...|.+.++++++..+..+=.
T Consensus 429 ----LR~SId~ydNFD~i~L---------------A~rL----EkHe---L~eFRrIAA~LYkkn~rw~qsi~l~KkDkl 482 (624)
T 3lvg_A 429 ----LRTSIDAYDNFDNISL---------------AQRL----EKHE---LIEFRRIAAYLFKGNNRWKQSVELCKKDSL 482 (624)
T ss_dssp ----HHHTTSSCCCSCTTHH---------------HHHH----HTCS---SHHHHHHHHHHHHTTCHHHHHSSCSSTTCC
T ss_pred ----HHHHHHHhccccHHHH---------------HHHH----hhCc---hHHHHHHHHHHHHhcccHHHHHHHHHhccc
Confidence 1222222112222222 2221 1110 11111223456788888888877765432
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 037236 636 DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKY 696 (953)
Q Consensus 636 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~ 696 (953)
-+| -|..-+..|+.+-|.++++-..+.| +...|.+.+-.|.+.=++|.++++
T Consensus 483 ykD------AietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 483 YKD------AMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp TTG------GGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred HHH------HHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHHHHH
Confidence 122 2444567888999999998888865 567888999999888888887775
No 189
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.88 E-value=1e-05 Score=71.33 Aligned_cols=71 Identities=10% Similarity=0.076 Sum_probs=40.3
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHH
Q 037236 711 EHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVL 781 (953)
Q Consensus 711 ~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~ 781 (953)
..+..+..+|.+.|++++|++.+++... +.++.++..+..++...|+++.|...++++++..|+++.....
T Consensus 28 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 100 (117)
T 3k9i_A 28 ECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSY 100 (117)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 3344444445555555555554444322 2234556666666666777777777777777777777655433
No 190
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.83 E-value=6.1e-05 Score=70.26 Aligned_cols=128 Identities=11% Similarity=0.020 Sum_probs=88.5
Q ss_pred ccHHHHHHHHHHhcCCHHHHHHHhhhcCC-----CC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----
Q 037236 608 AFVACSIIDMYAKCGCLEQSRRVFDRLKD-----KD----VTSWNAIIGGHGIHGYGKEAIELFEKMLALGH-KPD---- 673 (953)
Q Consensus 608 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~P~---- 673 (953)
..++..+...|...|++++|...|++... ++ ..++..+...|...|++++|++.+++..+... .++
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 45678889999999999999999998762 22 14788889999999999999999999876310 111
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHh
Q 037236 674 TFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK----LEHYACVVDMLGRAGKLDDAFKLIIE 735 (953)
Q Consensus 674 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~lv~~l~~~g~~~eA~~~~~~ 735 (953)
...+..+...+...|++++|..++++..+...-.++ ...+..+...+...|++++|.+.+++
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 154 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 154 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 346777788888999999999998887653211111 22344444445555555555554443
No 191
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.81 E-value=4.1e-05 Score=85.42 Aligned_cols=186 Identities=8% Similarity=-0.061 Sum_probs=117.7
Q ss_pred HHHhcCCHHHHHHHhhhcCC--C---C---------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCH-
Q 037236 617 MYAKCGCLEQSRRVFDRLKD--K---D---------------VTSWNAIIGGHGIHGYGKEAIELFEKMLAL-GHKPDT- 674 (953)
Q Consensus 617 ~y~~~g~~~~A~~~~~~~~~--~---~---------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~P~~- 674 (953)
.+.+.|++++|.+.|..+.+ + + ..++..++..|...|++++|.+.+.++... +..++.
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 34556666667666665431 1 0 123566777788888888888888776652 111222
Q ss_pred ---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhc---CCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-------CC
Q 037236 675 ---FTFVGILMACNHAGLVENGLKYFSQMQKLH---AVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPE-------EA 740 (953)
Q Consensus 675 ---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-------~~ 740 (953)
.....+...+...|.++++..+++...... +..+. ...+..|+..|...|++++|.+++++... ++
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 172 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP 172 (434)
T ss_dssp HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch
Confidence 122333334456677888888877765422 22222 45667788888888888888888765431 11
Q ss_pred -ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCC---C----cchHHHHHHHHHhcCCchHHHHHHHHH
Q 037236 741 -DAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPD---K----AENYVLVSNIYAGSEKWDDVRMMRQRM 802 (953)
Q Consensus 741 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~---~----~~~~~~l~~~y~~~g~~~~a~~~~~~m 802 (953)
...++..++..|...||++.|...+++++...|. + ...+..++.+|...|+|++|...+...
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 173 SLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 1346777777888888888888888888775322 2 245667778888888888888755444
No 192
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.79 E-value=2.9e-05 Score=67.38 Aligned_cols=89 Identities=8% Similarity=-0.047 Sum_probs=70.9
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCC------cchHHH
Q 037236 710 LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDK------AENYVL 781 (953)
Q Consensus 710 ~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~------~~~~~~ 781 (953)
...+..+...+.+.|++++|++.+++... +.++.+|..+..++...|+++.|...++++++++|++ ...+..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 44566667777777777777777766542 3467788888888999999999999999999999998 888889
Q ss_pred HHHHHHhcCCchHHHHH
Q 037236 782 VSNIYAGSEKWDDVRMM 798 (953)
Q Consensus 782 l~~~y~~~g~~~~a~~~ 798 (953)
++.++...|++++|...
T Consensus 84 ~~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHHHHHCCCCCSSS
T ss_pred HHHHHHHHHhHhhhHhH
Confidence 99999998888877543
No 193
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.73 E-value=0.002 Score=71.47 Aligned_cols=252 Identities=6% Similarity=-0.117 Sum_probs=150.0
Q ss_pred HHHhcCChhHHHHHHHhcccCCc--------------------ccHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCChh
Q 037236 516 LYMHCEKSSSARVLFDEMEDKSL--------------------VSWNTMIAGYSQNKLPVEAIVLFRRMFSIG-VQPCEI 574 (953)
Q Consensus 516 ~y~~~g~~~~A~~~f~~~~~~~~--------------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~ 574 (953)
.+.+.|++++|.+.|..+.+.+. .++..+...|.+.|++++|.+.+.++...- ..++..
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 34556677777776666542110 135667788888888888888888765521 112221
Q ss_pred ---hHHHHHH-HhccccchHHHHHHHHHHHH----cCCCC-CccHHHHHHHHHHhcCCHHHHHHHhhhcC--------CC
Q 037236 575 ---SIVSILS-ACSQLSALRLGKETHCYALK----AILTN-DAFVACSIIDMYAKCGCLEQSRRVFDRLK--------DK 637 (953)
Q Consensus 575 ---t~~~ll~-a~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~--------~~ 637 (953)
.....+. .+...|..+.+..++..... .+..+ -..++..|+..|...|++++|..++.+.. .+
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 172 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP 172 (434)
T ss_dssp HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch
Confidence 1222232 34456778888877765543 22222 24567788999999999999999988764 11
Q ss_pred -CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCC-C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-
Q 037236 638 -DVTSWNAIIGGHGIHGYGKEAIELFEKMLALG---HKP-D--TFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK- 709 (953)
Q Consensus 638 -~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~P-~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~- 709 (953)
.+..|..++..|...|++++|..++++..... ..| . ...+..+...+.+.|++++|...|....+.+....+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~~~~ 252 (434)
T 4b4t_Q 173 SLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESYHNLTTH 252 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTTTS
T ss_pred hHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhh
Confidence 24578889999999999999999999876521 122 1 245666777788999999999988887654322111
Q ss_pred --h-hHH---HHHHHHHhhcCCHHHHHHHHHhCCC-----CCChhHHHHHHHHHHhcCChhHHHHHHHHH
Q 037236 710 --L-EHY---ACVVDMLGRAGKLDDAFKLIIEMPE-----EADAGIWSSLLRSCRTYGALKMGEKVAKTL 768 (953)
Q Consensus 710 --~-~~~---~~lv~~l~~~g~~~eA~~~~~~~~~-----~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 768 (953)
. ... ..++-.....+..++-...+..... .|+...+..++.++. .+++.......+..
T Consensus 253 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~l~~~~~~~~~~ 321 (434)
T 4b4t_Q 253 NSYEKACQVLKYMLLSKIMLNLIDDVKNILNAKYTKETYQSRGIDAMKAVAEAYN-NRSLLDFNTALKQY 321 (434)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHCSSSSTTCCCHHHHHHHHHHHHHH-HTCHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHhccchhHHHhHHHHHHHHHHhcchhhhHHHHHHHHHH-hhhHHHHHHHHHHH
Confidence 1 111 1112222233344444444443222 233445666666554 44555555554443
No 194
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.72 E-value=0.00011 Score=79.73 Aligned_cols=113 Identities=12% Similarity=0.077 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHH
Q 037236 674 TFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSCR 753 (953)
Q Consensus 674 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~ 753 (953)
...+..+...+...|++++|+..|++.++.. |... .....+++.++ .+.+..+|..+...+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~~----------~~~~~~~~~~~-----~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGSR----------AAAEDADGAKL-----QPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHHH----------HHSCHHHHGGG-----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcCc----------cccChHHHHHH-----HHHHHHHHHHHHHHHH
Confidence 4567788888899999999999998886521 1100 01111111110 0234678899999999
Q ss_pred hcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 754 TYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 754 ~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
..|+++.|...++++++++|+++.+|..++.+|...|++++|...+++..+
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998887765
No 195
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.72 E-value=7.6e-05 Score=83.40 Aligned_cols=64 Identities=11% Similarity=0.108 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhcc-----CCCCcch---HHHHHHHHHhcCCchHHHHHHHHHHHCCC
Q 037236 744 IWSSLLRSCRTYGALKMGEKVAKTLLEL-----EPDKAEN---YVLVSNIYAGSEKWDDVRMMRQRMKERGL 807 (953)
Q Consensus 744 ~~~~ll~~~~~~g~~~~a~~~~~~~~~l-----~p~~~~~---~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 807 (953)
+++.|...|...|++++|+..+++++++ .|++|.+ +..|...+.+.|++++|..+++.++++-.
T Consensus 395 ~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~ 466 (490)
T 3n71_A 395 AVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAAL 466 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666666666666666666666553 5655544 45788889999999999999999987543
No 196
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.70 E-value=0.00027 Score=79.21 Aligned_cols=124 Identities=13% Similarity=0.047 Sum_probs=96.1
Q ss_pred ccHHHHHHHHHHhcCCHHHHHHHhhhcC---CCC---------------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 037236 608 AFVACSIIDMYAKCGCLEQSRRVFDRLK---DKD---------------VTSWNAIIGGHGIHGYGKEAIELFEKMLALG 669 (953)
Q Consensus 608 ~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~---------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 669 (953)
...+..+...|.+.|++++|...|++.. +.+ ...|..+..+|.+.|++++|+..|++.++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~-- 345 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG-- 345 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh--
Confidence 4456677888889999999999998775 223 57888888889999999999999999888
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHH-HHHhC
Q 037236 670 HKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFK-LIIEM 736 (953)
Q Consensus 670 ~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~-~~~~~ 736 (953)
+.| +...+..+..+|...|++++|+..|+++++ +.|+ ...+..+..++.+.|+.++|.+ ++++|
T Consensus 346 ~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~---l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 346 LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE---VNPQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TC----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456 667788888899999999999999988865 5665 6677778888888888877764 44444
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.69 E-value=0.00011 Score=60.83 Aligned_cols=81 Identities=20% Similarity=0.237 Sum_probs=62.0
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 037236 710 LEHYACVVDMLGRAGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYA 787 (953)
Q Consensus 710 ~~~~~~lv~~l~~~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 787 (953)
...+..+...+.+.|++++|++.+++... +.+..+|..+...+...|+++.|...++++++++|+++.++..++.+|.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 34455566666666777777666665432 3356678888888888999999999999999999999999999999887
Q ss_pred hcC
Q 037236 788 GSE 790 (953)
Q Consensus 788 ~~g 790 (953)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 198
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.63 E-value=0.00014 Score=61.72 Aligned_cols=66 Identities=17% Similarity=0.149 Sum_probs=59.7
Q ss_pred CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 739 EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 739 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
+.++.+|..+...+...|+++.|...++++++++|+++.+|..++.+|...|++++|...+++..+
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 346788999999999999999999999999999999999999999999999999999998776654
No 199
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.55 E-value=0.00056 Score=56.79 Aligned_cols=68 Identities=12% Similarity=0.012 Sum_probs=60.6
Q ss_pred CCChhHHHHHHHHHHhcCC---hhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCC
Q 037236 739 EADAGIWSSLLRSCRTYGA---LKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKERG 806 (953)
Q Consensus 739 ~~~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 806 (953)
++|+.+|..+..++...++ .+.|...++++++++|+++.+...+++++...|++++|+..++++.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4577888888888765554 7999999999999999999999999999999999999999999998743
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.53 E-value=0.00013 Score=63.83 Aligned_cols=77 Identities=8% Similarity=0.060 Sum_probs=63.2
Q ss_pred HHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 728 DAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 728 eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
+|++.+++... +.++..|..+...+...|+++.|...++++++++|+++.++..++.+|...|++++|...++...+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555554432 346778888888899999999999999999999999999999999999999999999998777654
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.51 E-value=9.6e-05 Score=63.95 Aligned_cols=95 Identities=13% Similarity=0.141 Sum_probs=68.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC-------
Q 037236 638 DVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK------- 709 (953)
Q Consensus 638 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~------- 709 (953)
+...|..+...+...|++++|++.|++.++ ..| +...+..+..++...|++++|+..|++.++ +.|+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~ 77 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLIT--AQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR---YTSTAEHVAIR 77 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCSSTTSHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCccHHHHH
Confidence 455677788888888888888888888888 456 667788888888888888888888888865 4555
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 037236 710 LEHYACVVDMLGRAGKLDDAFKLIIEMP 737 (953)
Q Consensus 710 ~~~~~~lv~~l~~~g~~~eA~~~~~~~~ 737 (953)
...+..+..++...|++++|.+.+++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 78 SKLQYRLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp HHHHHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred HHHHHHHHHHHHHHHhHhhhHhHHHHhH
Confidence 3345555566666666666655555443
No 202
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.50 E-value=5.2e-05 Score=69.22 Aligned_cols=82 Identities=12% Similarity=0.046 Sum_probs=57.9
Q ss_pred cCCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCC----------hhHHHHHHHHHhccCCCCcchHHHHHHHHHhcC
Q 037236 723 AGKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGA----------LKMGEKVAKTLLELEPDKAENYVLVSNIYAGSE 790 (953)
Q Consensus 723 ~g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g 790 (953)
.+.+++|.+.+++... +.++..|..+..++...++ +++|+..++++++++|+++.+|..|+++|...|
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 3344444444443321 2234444444444444433 569999999999999999999999999999875
Q ss_pred -----------CchHHHHHHHHHHH
Q 037236 791 -----------KWDDVRMMRQRMKE 804 (953)
Q Consensus 791 -----------~~~~a~~~~~~m~~ 804 (953)
++++|.+.+++.-+
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~ 119 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVD 119 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcchhhhhccHHHHHHHHHHHHH
Confidence 89999998887766
No 203
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.50 E-value=7.3e-05 Score=68.24 Aligned_cols=103 Identities=12% Similarity=0.095 Sum_probs=67.9
Q ss_pred HhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHhcCCCCC-hhHHHHHH
Q 037236 650 GIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLV----------ENGLKYFSQMQKLHAVKPK-LEHYACVV 717 (953)
Q Consensus 650 ~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~----------~~a~~~~~~m~~~~~~~p~-~~~~~~lv 717 (953)
.+.+++++|++.+++..+ ..| +...|..+..++...|++ ++|+..|++.++ +.|+ ...|.++.
T Consensus 13 ~r~~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~---ldP~~~~A~~~LG 87 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL---IDPKKDEAVWCIG 87 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH---hCcCcHHHHHHHH
Confidence 455667788888888877 466 666777777777777654 466666666655 4555 45555566
Q ss_pred HHHhhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcch
Q 037236 718 DMLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAEN 778 (953)
Q Consensus 718 ~~l~~~g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~ 778 (953)
.+|...|++ .|+.. ...|++++|...++++++++|++...
T Consensus 88 ~ay~~lg~l------------~P~~~---------~a~g~~~eA~~~~~kAl~l~P~~~~y 127 (158)
T 1zu2_A 88 NAYTSFAFL------------TPDET---------EAKHNFDLATQFFQQAVDEQPDNTHY 127 (158)
T ss_dssp HHHHHHHHH------------CCCHH---------HHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHhccc------------Ccchh---------hhhccHHHHHHHHHHHHHhCCCCHHH
Confidence 555555433 22211 11268999999999999999988643
No 204
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.48 E-value=0.001 Score=76.20 Aligned_cols=147 Identities=15% Similarity=0.138 Sum_probs=121.2
Q ss_pred hcC-ChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHhcCCCCC-hhHHHHHH
Q 037236 651 IHG-YGKEAIELFEKMLALGHKPD-TFTFVGILMACNHAGL----------VENGLKYFSQMQKLHAVKPK-LEHYACVV 717 (953)
Q Consensus 651 ~~g-~~~~A~~l~~~m~~~g~~P~-~~t~~~ll~a~~~~g~----------~~~a~~~~~~m~~~~~~~p~-~~~~~~lv 717 (953)
+.| ..++|++.+++++. +.|+ ...|+.-..++.+.|+ ++++++.++.+.+ ..|. ...|..-.
T Consensus 40 ~~~~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~---~~pK~y~aW~hR~ 114 (567)
T 1dce_A 40 QAGELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR---VNPKSYGTWHHRC 114 (567)
T ss_dssp HTTCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH---hCCCCHHHHHHHH
Confidence 344 45788999999999 6884 4557777777777777 9999999999987 4455 66777777
Q ss_pred HHHhhcC--CHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcC-ChhHHHHHHHHHhccCCCCcchHHHHHHHHHhc---
Q 037236 718 DMLGRAG--KLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYG-ALKMGEKVAKTLLELEPDKAENYVLVSNIYAGS--- 789 (953)
Q Consensus 718 ~~l~~~g--~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~--- 789 (953)
.++.+.| ++++|+++++++.. +.+..+|+....+....| ..+.+...++++++.+|+|.+++...+.++...
T Consensus 115 w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~ 194 (567)
T 1dce_A 115 WLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQ 194 (567)
T ss_dssp HHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccc
Confidence 8888999 77999999999865 457889999999999999 899999999999999999999999999998874
Q ss_pred -----------CCchHHHHHHHHH
Q 037236 790 -----------EKWDDVRMMRQRM 802 (953)
Q Consensus 790 -----------g~~~~a~~~~~~m 802 (953)
++++++.+..+..
T Consensus 195 ~~~~~~~~~~~~~~~eel~~~~~a 218 (567)
T 1dce_A 195 PDSGPQGRLPENVLLKELELVQNA 218 (567)
T ss_dssp CCSSSCCSSCHHHHHHHHHHHHHH
T ss_pred ccccccccccHHHHHHHHHHHHHH
Confidence 5567777755444
No 205
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.38 E-value=0.00013 Score=77.51 Aligned_cols=457 Identities=12% Similarity=0.051 Sum_probs=242.7
Q ss_pred CcccHHHHHHHHHhcCCCHHHHHHHHHHhhcCCCChhHHHHHHHHhccCCChhHHHHHHHHHhhhcCCCCCchhhhHHHH
Q 037236 27 EGLHFLQEITTLCEESKSLNKALSLLQENLHNADLKEATGVLLQACGHEKDIEIGKRVHELISASTQFSNDFIINTRLIT 106 (953)
Q Consensus 27 ~~~~~~~~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Li~ 106 (953)
.+..|..+..+....+ ...+|+..|=++ .++..|..++.++.+.|.++.-...+.-.. +. ..++.+-+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~-~v~eAIdsyIkA----~Dps~y~eVi~~A~~~~~~edLv~yL~MaR-k~--~ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKG-MVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVKYLQMAR-KK--ARESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSS-SCTTTTTSSCCC----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTS-TT--CCSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccC-chHHHHHHHHhC----CChHHHHHHHHHHHhCCCHHHHHHHHHHHH-HH--hcccccHHHHHH
Confidence 4556777777777777 666666544332 344556677777777777776666554443 22 345556666777
Q ss_pred HHHhcCChhhHHHHhhcCCCCCchhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcccHHHHHHHhhcCCChhhHhH
Q 037236 107 MYSLCGFPLDSRRVFDSLKTRNLFQWNALVSGFTKNELYPDVLSIFVELLSDTELKPDNFTFPCVIKACGGIADVSFGSG 186 (953)
Q Consensus 107 ~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 186 (953)
+|++.+++.+-.+++. .||+.--..+..-|...|.++.|.-+|..+..
T Consensus 125 ayAk~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN----------------------------- 172 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN----------------------------- 172 (624)
T ss_dssp HHHTSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC-----------------------------
T ss_pred HHHhhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc-----------------------------
Confidence 7777776554333222 34554445555555555555555555443322
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHhhccCChHHHHHHhccCCCCCeecHHHHHHHHHcCCCchHHHHHHHHhhhccCCCCC
Q 037236 187 VHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGSSENGFSCESFDLLIKMMGCEEGFIP 266 (953)
Q Consensus 187 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~~g~~p 266 (953)
|..|...+.+.|++..|.+.-++. .++.||-.+-.+|+..+.+.-|.-+--.+. +.|
T Consensus 173 ----------------~akLAstLV~L~~yq~AVdaArKA--ns~ktWKeV~~ACvd~~EfrLAqicGLniI-----vha 229 (624)
T 3lvg_A 173 ----------------FGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHA 229 (624)
T ss_dssp ----------------CTTTSSSSSSCSGGGSSTTTTTTC--CSSCSHHHHTHHHHHSCTTTTTTHHHHHHH-----CCS
T ss_pred ----------------HHHHHHHHHHHHHHHHHHHHHHhc--CChhHHHHHHHHHhCchHHHHHHHhcchhc-----ccH
Confidence 333344455556665554433222 356678888888888887766544433331 111
Q ss_pred ChhhHHHHHHhhhcCCCchHHHHHHHHHHHhCC-CCCchHHHHHHHhhHhcCChhHHHHHHh----cCCCC-------Cc
Q 037236 267 DVATVVTVLPVCAGEGNVDLGILVHGLAVKLGL-TRELMVNNALVDMYAKCGFLSEAQILFD----KNNNK-------NV 334 (953)
Q Consensus 267 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~f~----~~~~~-------d~ 334 (953)
..+..++..+-..|.+++-..+++..+ |+ .....+++-|.-.|+|-. +++-.+-++ ++.-| +.
T Consensus 230 --deL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELaILYsKY~-PeKlmEHlklf~sriNipKviracE~a 304 (624)
T 3lvg_A 230 --DELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQA 304 (624)
T ss_dssp --SCCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHHHHHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTT
T ss_pred --HHHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 223456667777888887777777665 32 456778888888888863 343333332 23322 45
Q ss_pred ccHHHHHHHHHcCCChhHHHHHHHHHHhcc------------CCCCCchhhHHHHHHHhccccchHHHHHHHHHHHHcCC
Q 037236 335 VSWNTIIGAFSMAGDVCGTFDLLRKMQMKE------------EEMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLRHGF 402 (953)
Q Consensus 335 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g------------~~~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~ 402 (953)
..|.-++--|..-..++.|... |.... ..-.+|...|-..|..|....-.- .-.++.- +...+
T Consensus 305 hLW~ElvfLY~~ydE~DnA~lt---Mi~h~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL~e~P~l-L~DLL~v-L~prl 379 (624)
T 3lvg_A 305 HLWAELVFLYDKYEEYDNAIIT---MMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLL-LNDLLMV-LSPRL 379 (624)
T ss_dssp TCHHHHHHHHHHHTCHHHHHHT---TTSCHHHHCCGGGGTTTGGGCSCSHHHHHHHHHHTTSCCTT-SHHHHHH-HCTTC
T ss_pred hhHHHHHHHHhcchhHHHHHHH---HHhCChhhccHHHHHHHHHHcchHHHHHHHHHHHHHhChHH-HHHHHHh-ccccC
Confidence 5688888888887777766532 21100 001223333333333333221100 0000000 00011
Q ss_pred CCchhHHHHHHHHHHhcCCcccHHHHhccCCCCChhhHH-HHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHh
Q 037236 403 DNDELVANAFVVAYAKCGSEISAENVFHGMDSRTVSSWN-ALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILA 481 (953)
Q Consensus 403 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 481 (953)
++ +..++++.+.|.+.-....+......|...-| ++-..|....+++.- +.- +..
T Consensus 380 Dh-----~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~L----R~S---------------Id~ 435 (624)
T 3lvg_A 380 DH-----TRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQAL----RTS---------------IDA 435 (624)
T ss_dssp CS-----TTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHH----HHT---------------TSS
T ss_pred Ch-----HHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHH----HHH---------------HHH
Confidence 11 12344555566666666666666555554433 555666666665431 222 222
Q ss_pred hccccccchhhHHHHHHHHhCCCCchhhHhhHHHHHHhcCChhHHHHHHHhcccCCcccHHHHHHHHHhcCChhHHHHHH
Q 037236 482 CTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMEDKSLVSWNTMIAGYSQNKLPVEAIVLF 561 (953)
Q Consensus 482 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 561 (953)
|-+-.....|.++ .++ +-...-..-...|.+.++++++..+..+= ..|.-.|..-+..|+.+-|.+++
T Consensus 436 ydNFD~i~LA~rL----EkH---eL~eFRrIAA~LYkkn~rw~qsi~l~KkD-----klykDAietAa~S~~~elaeeLL 503 (624)
T 3lvg_A 436 YDNFDNISLAQRL----EKH---ELIEFRRIAAYLFKGNNRWKQSVELCKKD-----SLYKDAMQYASESKDTELAEELL 503 (624)
T ss_dssp CCCSCTTHHHHHH----HTC---SSHHHHHHHHHHHHTTCHHHHHSSCSSTT-----CCTTGGGTTTTTCCCTTHHHHHH
T ss_pred hccccHHHHHHHH----hhC---chHHHHHHHHHHHHhcccHHHHHHHHHhc-----ccHHHHHHHHHHcCCHHHHHHHH
Confidence 2222222222221 111 11112222334577778888777654321 22333344456678888888888
Q ss_pred HHHHHcCCCCChhhHHHHHHHhccccchHHHHHH
Q 037236 562 RRMFSIGVQPCEISIVSILSACSQLSALRLGKET 595 (953)
Q Consensus 562 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~ 595 (953)
+-..+.| +...|...|-.|..+=+.+.+.++
T Consensus 504 ~yFv~~g---~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 504 QWFLQEE---KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp HHHHHHC---STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred HHHHHcC---chHHHHHHHHHHhhccChHHHHHH
Confidence 8888765 445688888888888777766554
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.30 E-value=0.0008 Score=60.98 Aligned_cols=110 Identities=15% Similarity=0.008 Sum_probs=67.9
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhh----cCCHHH
Q 037236 653 GYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGR----AGKLDD 728 (953)
Q Consensus 653 g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~----~g~~~e 728 (953)
+++++|++.|++..+.| .|+.. |...|...+.+++|.++|++..+. -+...+..|..+|.+ .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 45677777887777766 33333 556666667777777777777542 345566666666666 566666
Q ss_pred HHHHHHhCCCCCChhHHHHHHHHHHh----cCChhHHHHHHHHHhcc
Q 037236 729 AFKLIIEMPEEADAGIWSSLLRSCRT----YGALKMGEKVAKTLLEL 771 (953)
Q Consensus 729 A~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~l 771 (953)
|.+++++.....++..+..|...|.. .+|.++|...++++.+.
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 66666665444455555555555555 45556665555555554
No 207
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.26 E-value=0.00074 Score=75.42 Aligned_cols=90 Identities=11% Similarity=0.000 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhcc--------CCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCccCCceeE
Q 037236 744 IWSSLLRSCRTYGALKMGEKVAKTLLEL--------EPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKERGLQKEAGCSW 815 (953)
Q Consensus 744 ~~~~ll~~~~~~g~~~~a~~~~~~~~~l--------~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 815 (953)
++++|..+|...|++++|+..+++++++ +|+-...+..|+.+|..+|++++|..++++..+--. +
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~-~------ 425 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILL-V------ 425 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-H------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-H------
Confidence 4444444555555555555555555442 455566788999999999999999998776643110 1
Q ss_pred EEeCCEEEEEeeCCCCCccHHHHHHHHHHHHHHHHh
Q 037236 816 IELGGNIHSFVVGDNMHPEWEEIRGMWGRLEEQISK 851 (953)
Q Consensus 816 i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~~~~~~ 851 (953)
+.| ..||...++..+|.+...++++
T Consensus 426 ----------~lG-~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 426 ----------THG-PSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp ----------HTC-TTSHHHHHHHHHHHHHHHHHHH
T ss_pred ----------HhC-CCChHHHHHHHHHHHHHHHHHH
Confidence 111 3899999999999988866654
No 208
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.24 E-value=0.00096 Score=73.35 Aligned_cols=89 Identities=10% Similarity=0.088 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhcc--------CCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCccCCceeE
Q 037236 744 IWSSLLRSCRTYGALKMGEKVAKTLLEL--------EPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKERGLQKEAGCSW 815 (953)
Q Consensus 744 ~~~~ll~~~~~~g~~~~a~~~~~~~~~l--------~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 815 (953)
++++|..+|...|++++|+..+++++++ +|+-...+..|+.+|..+|++++|..++++..+-- .+
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~-~~------ 403 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIM-RV------ 403 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HH------
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-HH------
Confidence 3444444455555555555555554442 44455667788889999999999998766654310 01
Q ss_pred EEeCCEEEEEeeCCCCCccHHHHHHHHHHHHHHHH
Q 037236 816 IELGGNIHSFVVGDNMHPEWEEIRGMWGRLEEQIS 850 (953)
Q Consensus 816 i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~~~~~ 850 (953)
.- ...||...+++..|.+...+|+
T Consensus 404 ----------~l-G~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 404 ----------TH-GREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp ----------HT-CTTSHHHHHHHHHHHHHHHHHH
T ss_pred ----------hc-CCCChHHHHHHHHHHHHHHHHh
Confidence 01 2389999999999998887765
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.15 E-value=0.0014 Score=55.32 Aligned_cols=64 Identities=17% Similarity=0.229 Sum_probs=47.6
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037236 637 KDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQK 702 (953)
Q Consensus 637 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 702 (953)
.+...|..+...|...|++++|+..|++.++ ..| +...|..+..++...|++++|...|++.++
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVE--TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3566777777778888888888888888777 355 456677777778888888888888777765
No 210
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.13 E-value=0.00085 Score=58.45 Aligned_cols=64 Identities=8% Similarity=-0.035 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037236 637 KDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQK 702 (953)
Q Consensus 637 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 702 (953)
.+...|..+...|...|++++|+..|++.++ ..| +...+..+..++...|++++|...|+...+
T Consensus 17 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 17 DNMLLRFTLGKTYAEHEQFDAALPHLRAALD--FDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455566666666666666666666666665 234 344555666666666666666666666544
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.08 E-value=0.007 Score=63.46 Aligned_cols=137 Identities=18% Similarity=0.189 Sum_probs=66.9
Q ss_pred CCCHHHHHHHHHHHH--hcC---ChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC
Q 037236 636 DKDVTSWNAIIGGHG--IHG---YGKEAIELFEKMLALGHKPD-TFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPK 709 (953)
Q Consensus 636 ~~~~~~~~~li~~~~--~~g---~~~~A~~l~~~m~~~g~~P~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 709 (953)
+.+...|...+.+.. ..+ ...+|+.+|++.++ ..|+ ...+..+..++... ...+ |.
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~--------------~~~~--~~ 252 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVR--------------HSQH--PL 252 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHH--------------HHHS--CC
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHH--------------hccC--CC
Confidence 446667777666543 333 35789999999999 6885 45555555544410 0000 11
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHh
Q 037236 710 LEHYACVVDMLGRAGKLDDAFKLIIEMPE-EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAG 788 (953)
Q Consensus 710 ~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 788 (953)
.... + . .+.+|.+-...+.. +.++.++..+.-.+...|+++.|...++++++++| +..+|..++.++.-
T Consensus 253 ~~~~--~-~------~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~ 322 (372)
T 3ly7_A 253 DEKQ--L-A------ALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEM 322 (372)
T ss_dssp CHHH--H-H------HHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred chhh--H-H------HHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHH
Confidence 0000 0 0 01122221111111 23444555554444445555555555555555554 24455555555555
Q ss_pred cCCchHHHHHHH
Q 037236 789 SEKWDDVRMMRQ 800 (953)
Q Consensus 789 ~g~~~~a~~~~~ 800 (953)
.|++++|.+.+.
T Consensus 323 ~G~~~eA~e~~~ 334 (372)
T 3ly7_A 323 KGMNREAADAYL 334 (372)
T ss_dssp TTCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 555555555443
No 212
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.08 E-value=0.0023 Score=52.47 Aligned_cols=64 Identities=23% Similarity=0.335 Sum_probs=59.1
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 741 DAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 741 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
+...|..+...+...|+++.|...++++++++|+++.++..++.+|...|++++|...+++..+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3567888888999999999999999999999999999999999999999999999998877765
No 213
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.08 E-value=0.0041 Score=56.18 Aligned_cols=112 Identities=6% Similarity=-0.014 Sum_probs=96.0
Q ss_pred CCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHh----cCChhHHHH
Q 037236 688 GLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSCRT----YGALKMGEK 763 (953)
Q Consensus 688 g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~ 763 (953)
+++++|.++|++..+ .+ .| ... |..+|...+..++|.+++++.....++..+..|...|.. .+|.+.|..
T Consensus 9 ~d~~~A~~~~~~aa~-~g-~~--~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACE-LN-EM--FGC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHH-TT-CT--THH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHc-CC-CH--hhh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 467899999999865 33 23 333 888888889999999999988777888899999988887 789999999
Q ss_pred HHHHHhccCCCCcchHHHHHHHHHh----cCCchHHHHHHHHHHHCCC
Q 037236 764 VAKTLLELEPDKAENYVLVSNIYAG----SEKWDDVRMMRQRMKERGL 807 (953)
Q Consensus 764 ~~~~~~~l~p~~~~~~~~l~~~y~~----~g~~~~a~~~~~~m~~~~~ 807 (953)
.++++.+. .++.++..|+.+|.. .+++++|...+++..+.|.
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999987 689999999999999 9999999999998887654
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.93 E-value=0.0026 Score=69.80 Aligned_cols=116 Identities=13% Similarity=0.016 Sum_probs=65.1
Q ss_pred hcCCHHHHHHHHHHHHHhcC--CCC---C-hhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChh
Q 037236 686 HAGLVENGLKYFSQMQKLHA--VKP---K-LEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSCRTYGALK 759 (953)
Q Consensus 686 ~~g~~~~a~~~~~~m~~~~~--~~p---~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 759 (953)
+.|++++|..++++..+... +-| + ..+++.|..+|...|++++|+.++++.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~a----------------------- 366 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKI----------------------- 366 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------------------
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHH-----------------------
Confidence 34667777776666544321 112 2 344555556666666666666555542
Q ss_pred HHHHHHHHHhc-cCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCccCCceeEEEeCCEEEEEeeCCCCCccHHHH
Q 037236 760 MGEKVAKTLLE-LEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKERGLQKEAGCSWIELGGNIHSFVVGDNMHPEWEEI 838 (953)
Q Consensus 760 ~a~~~~~~~~~-l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~~~~f~~~d~~hp~~~~i 838 (953)
..+.++.+- -+|+-...|..|+.+|..+|++++|..++++..+--. + .=...||...++
T Consensus 367 --L~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~-~-----------------~lG~~Hp~~~~l 426 (433)
T 3qww_A 367 --IKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIME-V-----------------AHGKDHPYISEI 426 (433)
T ss_dssp --HHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-H-----------------HTCTTCHHHHHH
T ss_pred --HHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH-H-----------------HcCCCChHHHHH
Confidence 112222221 2445555677888888888888888887665543110 0 112379998888
Q ss_pred HHHHHH
Q 037236 839 RGMWGR 844 (953)
Q Consensus 839 ~~~l~~ 844 (953)
+..|++
T Consensus 427 ~~~l~~ 432 (433)
T 3qww_A 427 KQEIES 432 (433)
T ss_dssp HHHHHC
T ss_pred HHHHhc
Confidence 876653
No 215
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.72 E-value=0.022 Score=59.69 Aligned_cols=109 Identities=9% Similarity=-0.074 Sum_probs=67.0
Q ss_pred CHHHHHHHHHHHH--hcCC---HHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhHHH
Q 037236 673 DTFTFVGILMACN--HAGL---VENGLKYFSQMQKLHAVKPK-LEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAGIWS 746 (953)
Q Consensus 673 ~~~t~~~ll~a~~--~~g~---~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~~~~~~ 746 (953)
|...|..++.+.. ..+. ..+|+.+|+++++ +.|+ ...|..+..+|. ...... ..+.....
T Consensus 193 ~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~---lDP~~a~A~A~la~a~~----------~~~~~~-~~~~~~~~ 258 (372)
T 3ly7_A 193 RGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ---SSPEFTYARAEKALVDI----------VRHSQH-PLDEKQLA 258 (372)
T ss_dssp SGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHH----------HHHHHS-CCCHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHH----------HHhccC-CCchhhHH
Confidence 5566666665543 3333 4789999999877 6787 555655544444 011110 01111111
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCC
Q 037236 747 SLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKERG 806 (953)
Q Consensus 747 ~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 806 (953)
.+ ..+.+. ...++++|.++.+|..++.++...|++++|....++....+
T Consensus 259 ~l----------~~a~~a-~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln 307 (372)
T 3ly7_A 259 AL----------NTEIDN-IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE 307 (372)
T ss_dssp HH----------HHHHHH-HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HH----------HHHHHH-HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 11 123332 23557789999999999999999999999999887776654
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.69 E-value=0.0042 Score=52.06 Aligned_cols=64 Identities=17% Similarity=0.280 Sum_probs=46.3
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCC-CC-Chh-HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchH
Q 037236 716 VVDMLGRAGKLDDAFKLIIEMPE-EA-DAG-IWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENY 779 (953)
Q Consensus 716 lv~~l~~~g~~~eA~~~~~~~~~-~~-~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~ 779 (953)
....+.+.|++++|++.+++... .| +.. .|..+...+...|+++.|...++++++++|+++.++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 34556667777777777766542 23 456 777777778888888888888888888888888766
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.54 E-value=0.0055 Score=51.29 Aligned_cols=57 Identities=19% Similarity=0.307 Sum_probs=52.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHhccCCCCcc-hHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 748 LLRSCRTYGALKMGEKVAKTLLELEPDKAE-NYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 748 ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~-~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
....+...|+++.|...++++++.+|+++. .+..++.+|...|++++|...++...+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455677889999999999999999999999 999999999999999999998887765
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.29 E-value=0.021 Score=62.69 Aligned_cols=90 Identities=16% Similarity=0.100 Sum_probs=49.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCC---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc----C-CCCC-hh
Q 037236 645 IIGGHGIHGYGKEAIELFEKMLALG---HKPD----TFTFVGILMACNHAGLVENGLKYFSQMQKLH----A-VKPK-LE 711 (953)
Q Consensus 645 li~~~~~~g~~~~A~~l~~~m~~~g---~~P~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~----~-~~p~-~~ 711 (953)
.+..+...|++++|+.++++.++.. +.|+ ..+++.+..+|...|++++|+.+++++++.+ | -.|+ ..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 3445666777777777777777531 2232 2456677777777777777777777665421 1 1122 23
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHH
Q 037236 712 HYACVVDMLGRAGKLDDAFKLII 734 (953)
Q Consensus 712 ~~~~lv~~l~~~g~~~eA~~~~~ 734 (953)
+++.|..+|...|++++|+.+++
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~ 395 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLR 395 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Confidence 34444444444444444444443
No 219
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.26 E-value=0.011 Score=53.24 Aligned_cols=63 Identities=5% Similarity=-0.021 Sum_probs=28.2
Q ss_pred ChhHHHHHHHHHHhcC---ChhHHHHHHHHHhccC-C-CCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 037236 741 DAGIWSSLLRSCRTYG---ALKMGEKVAKTLLELE-P-DKAENYVLVSNIYAGSEKWDDVRMMRQRMK 803 (953)
Q Consensus 741 ~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~l~-p-~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 803 (953)
+..+.-.+.+++...+ ++++|...++.+++.+ | ++...+..|+-.|++.|++++|.+..+.+-
T Consensus 31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL 98 (152)
T 1pc2_A 31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLL 98 (152)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3334444444444433 3334444444444444 3 234444444444555555555554444443
No 220
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.10 E-value=0.42 Score=41.16 Aligned_cols=142 Identities=9% Similarity=0.046 Sum_probs=94.9
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHH
Q 037236 649 HGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDD 728 (953)
Q Consensus 649 ~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~e 728 (953)
+...|..++..++..+.... .+..-++-++--...+-+=+-..+.++.+-+-+.+.| +|++..
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~--------------C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK--------------CQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG--------------CSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcHh--------------hhcHHH
Confidence 44568888888888888763 2333344444444444555555666666644343333 344444
Q ss_pred HHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCc
Q 037236 729 AFKLIIEMPEEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKERGLQ 808 (953)
Q Consensus 729 A~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 808 (953)
....+-.+. .+.....--+......|..++-++++..++.-+|-+|+..+-++++|.+.|...+|.+++++.-++|++
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 443333331 233344455666778899999999999987777778999999999999999999999999999999986
Q ss_pred c
Q 037236 809 K 809 (953)
Q Consensus 809 ~ 809 (953)
.
T Consensus 158 E 158 (172)
T 1wy6_A 158 E 158 (172)
T ss_dssp H
T ss_pred H
Confidence 3
No 221
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.94 E-value=0.13 Score=62.01 Aligned_cols=103 Identities=17% Similarity=0.168 Sum_probs=65.7
Q ss_pred HHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037236 616 DMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLK 695 (953)
Q Consensus 616 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~ 695 (953)
+....+|++++|.++...+. +...|..+...+.+.|+++.|++.|.++.. |..+...+...|+.+...+
T Consensus 660 ~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~ 728 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVT 728 (814)
T ss_dssp HHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHH
T ss_pred ehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHH
Confidence 34556888888888877663 567888888889999999999988887643 2233444444666665544
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 037236 696 YFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEM 736 (953)
Q Consensus 696 ~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~ 736 (953)
+-+.... .| .++.-..+|.+.|++++|++++.++
T Consensus 729 ~~~~a~~-~~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 729 LAKDAET-TG------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHH-TT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHH-cC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4433322 11 1233344566677777777776654
No 222
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.93 E-value=0.025 Score=61.95 Aligned_cols=85 Identities=12% Similarity=-0.021 Sum_probs=56.5
Q ss_pred hcCChHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc----C-CCCC-hhHHHHHH
Q 037236 651 IHGYGKEAIELFEKMLAL---GHKPD----TFTFVGILMACNHAGLVENGLKYFSQMQKLH----A-VKPK-LEHYACVV 717 (953)
Q Consensus 651 ~~g~~~~A~~l~~~m~~~---g~~P~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~----~-~~p~-~~~~~~lv 717 (953)
..|++++|+.++++.++. -+-|+ ..+++.|..+|...|++++|..+++++++.+ | -.|+ ...|+.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457889999999887762 12333 3678899999999999999999998876532 1 1222 33455555
Q ss_pred HHHhhcCCHHHHHHHHHh
Q 037236 718 DMLGRAGKLDDAFKLIIE 735 (953)
Q Consensus 718 ~~l~~~g~~~eA~~~~~~ 735 (953)
.+|...|++++|+.++++
T Consensus 390 ~~~~~qg~~~eA~~~~~~ 407 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKK 407 (433)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHH
Confidence 555555555555555544
No 223
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.62 E-value=0.03 Score=47.41 Aligned_cols=44 Identities=20% Similarity=0.255 Sum_probs=36.7
Q ss_pred CChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHH
Q 037236 740 ADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVS 783 (953)
Q Consensus 740 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~ 783 (953)
+.+.++..|..++...|+++.|...++++++++|+++.+...+.
T Consensus 44 ~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 44 DKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 34567888888999999999999999999999999987755443
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.34 E-value=0.087 Score=47.38 Aligned_cols=94 Identities=14% Similarity=0.061 Sum_probs=62.0
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHH
Q 037236 655 GKEAIELFEKMLALGHKPDTFTFVGILMACNHAG---LVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFK 731 (953)
Q Consensus 655 ~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~ 731 (953)
...+.+-|.+..+.|. ++..+...+..++.+++ ++++|+.+|+...+.. .|+ .
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~--~p~-~-------------------- 69 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG--SKE-E-------------------- 69 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS--CHH-H--------------------
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--Ccc-c--------------------
Confidence 4555666666666543 56666667777777776 5557777777765521 121 0
Q ss_pred HHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHH
Q 037236 732 LIIEMPEEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVL 781 (953)
Q Consensus 732 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~ 781 (953)
+...+-.|.-+|.+.|+++.|.+.++++++++|+|..+..+
T Consensus 70 ---------~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 70 ---------QRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp ---------HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred ---------hHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 12234455667788889999999999999999988865543
No 225
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.21 E-value=0.16 Score=61.22 Aligned_cols=152 Identities=12% Similarity=0.100 Sum_probs=85.0
Q ss_pred hcCCHHHHHH-HhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037236 620 KCGCLEQSRR-VFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFS 698 (953)
Q Consensus 620 ~~g~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~ 698 (953)
..|++++|.+ ++..++.++ ....++..+...|..++|+++.+. |+.. .......|++++|.++.+
T Consensus 611 ~~~~~~~a~~~~l~~i~~~~--~~~~~~~~l~~~~~~~~a~~~~~~-------~~~~-----f~~~l~~~~~~~A~~~~~ 676 (814)
T 3mkq_A 611 LRGEIEEAIENVLPNVEGKD--SLTKIARFLEGQEYYEEALNISPD-------QDQK-----FELALKVGQLTLARDLLT 676 (814)
T ss_dssp HTTCHHHHHHHTGGGCCCHH--HHHHHHHHHHHTTCHHHHHHHCCC-------HHHH-----HHHHHHHTCHHHHHHHHT
T ss_pred HhCCHHHHHHHHHhcCCchH--HHHHHHHHHHhCCChHHheecCCC-------cchh-----eehhhhcCCHHHHHHHHH
Confidence 4677777776 553333011 225566666777777777665421 1111 122345677777777643
Q ss_pred HHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC----------CCChhHHHHHHHHHHhcCChhHHHHHHHHH
Q 037236 699 QMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPE----------EADAGIWSSLLRSCRTYGALKMGEKVAKTL 768 (953)
Q Consensus 699 ~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~----------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 768 (953)
.+ .+...|..|.+++.+.|+++.|++.|.++.. ..+...+..+...+...|+++.|..++.+.
T Consensus 677 ~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~ 749 (814)
T 3mkq_A 677 DE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIA 749 (814)
T ss_dssp TC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHc
Confidence 22 3456677777777777777777777776542 122223334444444555555555554432
Q ss_pred hccCCCCcchHHHHHHHHHhcCCchHHHHHHH
Q 037236 769 LELEPDKAENYVLVSNIYAGSEKWDDVRMMRQ 800 (953)
Q Consensus 769 ~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 800 (953)
+-+....++|.+.++|++|..+.+
T Consensus 750 --------g~~~~a~~~~~~~~~~~~A~~lA~ 773 (814)
T 3mkq_A 750 --------GDIQGAKDLLIKSQRFSEAAFLGS 773 (814)
T ss_dssp --------TCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --------CCHHHHHHHHHHcCChHHHHHHHH
Confidence 222345567777888888877665
No 226
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.10 E-value=0.048 Score=54.66 Aligned_cols=86 Identities=7% Similarity=0.079 Sum_probs=61.2
Q ss_pred HHHHHHHHhCCC-CCC---hhHHHHHHHHHHh-----cCChhHHHHHHHHHhccCCCC-cchHHHHHHHHHhc-CCchHH
Q 037236 727 DDAFKLIIEMPE-EAD---AGIWSSLLRSCRT-----YGALKMGEKVAKTLLELEPDK-AENYVLVSNIYAGS-EKWDDV 795 (953)
Q Consensus 727 ~eA~~~~~~~~~-~~~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~l~p~~-~~~~~~l~~~y~~~-g~~~~a 795 (953)
.+|...+++... .|+ ...|..|+..|.. -|+.+.|++.++++++++|+. ..+++.++..|... |+.+++
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a 259 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF 259 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence 344444444332 343 4566666666666 489999999999999999974 99999999998884 899999
Q ss_pred HHHHHHHHHCCCccCCc
Q 037236 796 RMMRQRMKERGLQKEAG 812 (953)
Q Consensus 796 ~~~~~~m~~~~~~~~~~ 812 (953)
.+..++.........|+
T Consensus 260 ~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 260 DEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHcCCCCCCCC
Confidence 99888877755443344
No 227
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.00 E-value=0.19 Score=41.29 Aligned_cols=64 Identities=13% Similarity=-0.015 Sum_probs=47.1
Q ss_pred CCHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037236 637 KDVTSWNAIIGGHGIHGY---GKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQK 702 (953)
Q Consensus 637 ~~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 702 (953)
+|+..|..+..++...++ .++|..+|++.++ ..| +......+...+...|++++|+.+|+.+.+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~--~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ--LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456667777776654444 5888888888888 577 456677777788888888888888888865
No 228
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.96 E-value=0.25 Score=49.56 Aligned_cols=112 Identities=13% Similarity=0.046 Sum_probs=80.5
Q ss_pred cCCHHHHHHHhhhcCCCCH--HHHHHHHHH-HHhc--C------ChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHh
Q 037236 621 CGCLEQSRRVFDRLKDKDV--TSWNAIIGG-HGIH--G------YGKEAIELFEKMLALGHKPD---TFTFVGILMACNH 686 (953)
Q Consensus 621 ~g~~~~A~~~~~~~~~~~~--~~~~~li~~-~~~~--g------~~~~A~~l~~~m~~~g~~P~---~~t~~~ll~a~~~ 686 (953)
.|+..+-.+.+.++.+.|+ ..|..++.+ +... | ...+|..++++.++ +.|+ ...|..+...|..
T Consensus 134 ~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~ 211 (301)
T 3u64_A 134 SGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAA 211 (301)
T ss_dssp SSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHh
Confidence 4555555566666664443 467777653 3332 3 25778888888888 6886 5678888888888
Q ss_pred -----cCCHHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHhhc-CCHHHHHHHHHhCC
Q 037236 687 -----AGLVENGLKYFSQMQKLHAVKPK--LEHYACVVDMLGRA-GKLDDAFKLIIEMP 737 (953)
Q Consensus 687 -----~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~lv~~l~~~-g~~~eA~~~~~~~~ 737 (953)
.|+.++|.++|++.++ +.|+ +.++....+.|++. |+.++|.+.+++..
T Consensus 212 vPp~~gGd~ekA~~~ferAL~---LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL 267 (301)
T 3u64_A 212 APESFGGGMEKAHTAFEHLTR---YCSAHDPDHHITYADALCIPLNNRAGFDEALDRAL 267 (301)
T ss_dssp SCTTTTCCHHHHHHHHHHHHH---HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred CCCccCCCHHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4999999999999987 6673 77777788888774 88888887777653
No 229
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=94.25 E-value=9.5 Score=43.40 Aligned_cols=250 Identities=10% Similarity=-0.003 Sum_probs=119.8
Q ss_pred hhHHHHHHhcCChhHHHHHHHhcccCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchH
Q 037236 511 ISLLSLYMHCEKSSSARVLFDEMEDKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALR 590 (953)
Q Consensus 511 ~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 590 (953)
+.-+..+.+.+++.....++.. ...+...-.....+....|+..+|.....++-..| .........++..+.+.|.+.
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt 153 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQD 153 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCC
Confidence 3445556667777777765555 32233333345556666777777777777666555 223344455555555443332
Q ss_pred HH--HHHHHHHHHcC-----------CCCCc-cHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHHH---HHHHHHHHHhcC
Q 037236 591 LG--KETHCYALKAI-----------LTNDA-FVACSIIDMYAKCGCLEQSRRVFDRLKDKDVTS---WNAIIGGHGIHG 653 (953)
Q Consensus 591 ~a--~~~~~~~~~~~-----------~~~~~-~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~g 653 (953)
.. .+=...+...| +.++. .....++..+.+-..+ ....... .++... ...-+.-+++ .
T Consensus 154 ~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~---~~~~~~~-~~~~~~~~~~~~~~~rlar-~ 228 (618)
T 1qsa_A 154 PLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTV---LTFARTT-GATDFTRQMAAVAFASVAR-Q 228 (618)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGH---HHHHHHS-CCCHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhH---HHHHhcc-CCChhhHHHHHHHHHHHHh-c
Confidence 21 11111111111 11111 1112222222221111 1111111 111111 1111222333 3
Q ss_pred ChHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHH
Q 037236 654 YGKEAIELFEKMLALG-HKPDTF--TFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAF 730 (953)
Q Consensus 654 ~~~~A~~l~~~m~~~g-~~P~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~ 730 (953)
+.+.|..+|......+ +.+... ....+.......+...++...+..... ..++.....-.+..-.+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM---RSQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH---TCCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc---cCCChHHHHHHHHHHHHCCCHHHHH
Confidence 7788888888876543 222211 122222233344435566666666533 2233222333444455779999999
Q ss_pred HHHHhCCCCC-ChhHHH-HHHHHHHhcCChhHHHHHHHHHhc
Q 037236 731 KLIIEMPEEA-DAGIWS-SLLRSCRTYGALKMGEKVAKTLLE 770 (953)
Q Consensus 731 ~~~~~~~~~~-~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~ 770 (953)
..|+.|+..+ +..-|. =+..+....|+.+.|...++.+.+
T Consensus 306 ~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9999987643 222222 233355678999999999988875
No 230
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.15 E-value=1 Score=41.50 Aligned_cols=129 Identities=13% Similarity=0.113 Sum_probs=84.3
Q ss_pred HHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037236 616 DMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLK 695 (953)
Q Consensus 616 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~ 695 (953)
+....+|+++.|.++.+.+ .+...|..+......+|+++-|.+.|.+..+ |..+.-.|...|+.+.-.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 4455689999999988876 4677899999999999999999999987543 3344555666777766555
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHH
Q 037236 696 YFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSCRTYGALKMGEKVAKTL 768 (953)
Q Consensus 696 ~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 768 (953)
+-+.... .| -++.-...+.-.|+++++.+++.+...-|.+ .-..+.+|--+.|.++.+.+
T Consensus 82 la~iA~~-~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA------~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQT-RE------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLA------YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHH-TT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHH------HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHH-Cc------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHH------HHHHHHcCcHHHHHHHHHHh
Confidence 4443322 11 2344445566678888888888775432211 11234466666666665543
No 231
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.68 E-value=0.24 Score=42.73 Aligned_cols=97 Identities=14% Similarity=-0.015 Sum_probs=61.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHH---HHHHHHhCCCC--C--ChhHHHHHHHHHHh
Q 037236 682 MACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDD---AFKLIIEMPEE--A--DAGIWSSLLRSCRT 754 (953)
Q Consensus 682 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~e---A~~~~~~~~~~--~--~~~~~~~ll~~~~~ 754 (953)
..-.....+..+.+.|...... +. |+..+-..+..+|.+.....+ ++.+++..... | .-...-.|.-++.+
T Consensus 9 ~~~~~~~~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yk 86 (126)
T 1nzn_A 9 NELVSVEDLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR 86 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence 3333444455566666655432 22 666666677778888776665 77777776543 2 11234455556788
Q ss_pred cCChhHHHHHHHHHhccCCCCcchHH
Q 037236 755 YGALKMGEKVAKTLLELEPDKAENYV 780 (953)
Q Consensus 755 ~g~~~~a~~~~~~~~~l~p~~~~~~~ 780 (953)
.|+++.|.+.++.+++.+|+|..+..
T Consensus 87 lg~Y~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 87 LKEYEKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 88888888888888888887765443
No 232
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.12 E-value=1.3 Score=38.89 Aligned_cols=71 Identities=14% Similarity=0.186 Sum_probs=34.7
Q ss_pred CCChhHHHHHHHHHhhcCCHH---HHHHHHHhCCC-CC-C-hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcc
Q 037236 707 KPKLEHYACVVDMLGRAGKLD---DAFKLIIEMPE-EA-D-AGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAE 777 (953)
Q Consensus 707 ~p~~~~~~~lv~~l~~~g~~~---eA~~~~~~~~~-~~-~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~ 777 (953)
.|+..+--.+..+|.+....+ +++.+++.... .| + -...--|.-++.+.|+++.|.+..+.+++.+|+|..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 355555555555565555433 34444444321 22 1 112233334455666666666666666666665543
No 233
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.93 E-value=0.28 Score=56.99 Aligned_cols=54 Identities=17% Similarity=0.164 Sum_probs=49.8
Q ss_pred HHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 037236 749 LRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRM 802 (953)
Q Consensus 749 l~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 802 (953)
..-|...|+++.|..+++++...-|++-.++..|+.+|...|+|+.|+-..+.+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 444778899999999999999999999999999999999999999999988776
No 234
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=92.69 E-value=0.69 Score=42.64 Aligned_cols=71 Identities=20% Similarity=0.315 Sum_probs=39.2
Q ss_pred HHHhhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHH
Q 037236 718 DMLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRM 797 (953)
Q Consensus 718 ~~l~~~g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 797 (953)
+.-...|+++.|.++.+.+ .+...|..|...+..+||++.|++++.++- -+..|.-+|...|+-+.-.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l---~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~--------D~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL---NDSITWERLIQEALAQGNASLAEMIYQTQH--------SFDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT--------CHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh---CCHHHHHHHHHHHHHcCChHHHHHHHHHhC--------CHHHHHHHHHHhCCHHHHHH
Confidence 3445566666666666554 345566666666666666666666666633 22334445555555544443
Q ss_pred HH
Q 037236 798 MR 799 (953)
Q Consensus 798 ~~ 799 (953)
+-
T Consensus 82 la 83 (177)
T 3mkq_B 82 MQ 83 (177)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.57 E-value=1.2 Score=38.32 Aligned_cols=88 Identities=10% Similarity=-0.006 Sum_probs=64.2
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHhcCCCC--ChhHHHHHHHHHhhcCC
Q 037236 651 IHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVEN---GLKYFSQMQKLHAVKP--KLEHYACVVDMLGRAGK 725 (953)
Q Consensus 651 ~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~---a~~~~~~m~~~~~~~p--~~~~~~~lv~~l~~~g~ 725 (953)
.......+.+-|.+....|. |+..|-..+..++.++....+ |+.+++...+. -.| ..+..-.|.-++.|.|+
T Consensus 13 ~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~--~~p~~~Rd~lY~LAvg~yklg~ 89 (126)
T 1nzn_A 13 SVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK--GSKEEQRDYVFYLAVGNYRLKE 89 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT--SCHHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHhhh
Confidence 33445566677777666553 788888888999999888776 89998888552 224 24455567778999999
Q ss_pred HHHHHHHHHhCCC-CCC
Q 037236 726 LDDAFKLIIEMPE-EAD 741 (953)
Q Consensus 726 ~~eA~~~~~~~~~-~~~ 741 (953)
+++|.+.++.+.. +|+
T Consensus 90 Y~~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 90 YEKALKYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 9999999988764 554
No 236
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=91.18 E-value=1.2 Score=37.25 Aligned_cols=59 Identities=15% Similarity=0.048 Sum_probs=41.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhcc-------CCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 746 SSLLRSCRTYGALKMGEKVAKTLLEL-------EPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 746 ~~ll~~~~~~g~~~~a~~~~~~~~~l-------~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
-.++..+...|+++.|..-++.+++. .+..+..+..|+.+|.+.|++++|....+...+
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 34445555555555555555555553 234567889999999999999999998887765
No 237
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=88.64 E-value=2.4 Score=38.37 Aligned_cols=29 Identities=14% Similarity=0.119 Sum_probs=21.4
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhCCCC
Q 037236 711 EHYACVVDMLGRAGKLDDAFKLIIEMPEE 739 (953)
Q Consensus 711 ~~~~~lv~~l~~~g~~~eA~~~~~~~~~~ 739 (953)
+.---+..+|.+.|+.++|+..++.+|.+
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 44344667788888888888888888753
No 238
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=88.43 E-value=1.7 Score=38.54 Aligned_cols=54 Identities=17% Similarity=0.054 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHhCCC--CCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcc
Q 037236 724 GKLDDAFKLIIEMPE--EADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAE 777 (953)
Q Consensus 724 g~~~eA~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~ 777 (953)
++.++|.++|+.+.. +.=+.+|-....--.++|++..|.+++.+++.+.|....
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 455555555554421 112667777777777889999999999999988886544
No 239
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=87.36 E-value=1.7 Score=37.63 Aligned_cols=71 Identities=14% Similarity=0.186 Sum_probs=41.5
Q ss_pred CCChhHHHHHHHHHhhcCCHH---HHHHHHHhCCC-CC--ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcc
Q 037236 707 KPKLEHYACVVDMLGRAGKLD---DAFKLIIEMPE-EA--DAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAE 777 (953)
Q Consensus 707 ~p~~~~~~~lv~~l~~~g~~~---eA~~~~~~~~~-~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~ 777 (953)
.|+..+--.+..++.+....+ +++.+++.... .| .-..+--|.-++.+.|+++.|.+..+.+++.+|+|..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 355555555566666665443 45555554432 23 1234455555677777777777777777777776664
No 240
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=86.83 E-value=28 Score=35.75 Aligned_cols=134 Identities=12% Similarity=0.028 Sum_probs=86.5
Q ss_pred HHHHHHHhhccCChHHHHHHhccCCCCCeecHHHHHHHHHcCCCchHHHHHH----HHhhhccCCCCCChhhHHHHHHhh
Q 037236 203 SNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGSSENGFSCESFDLL----IKMMGCEEGFIPDVATVVTVLPVC 278 (953)
Q Consensus 203 ~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~----~~m~~~~~g~~p~~~t~~~ll~~~ 278 (953)
|.++..-|.+.+++++|.+++-+- ...+.+.|....|-++- +.. .+.++++|..+...++..+
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy--~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTF--RQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHH--HHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHH--HHcCCCCCHHHHHHHHHHH
Confidence 456667788899999999876331 33456677776665554 444 4667888888887777777
Q ss_pred hcCCCch-----HHHHHHHHHHHhC--CCCCchHHHHHHHhhHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCC
Q 037236 279 AGEGNVD-----LGILVHGLAVKLG--LTRELMVNNALVDMYAKCGFLSEAQILFDKNNNKNVVSWNTIIGAFSMAGD 349 (953)
Q Consensus 279 ~~~~~~~-----~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~ 349 (953)
.....-+ .......+-.+.| ..-|+.....+...|.+.+++.+|+.-|=....+....+..|+..+...+.
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~ 182 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDE 182 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSC
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence 6655322 1223334444555 345778888899999999999999988853222223556555555544443
No 241
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=85.24 E-value=68 Score=38.08 Aligned_cols=125 Identities=14% Similarity=0.044 Sum_probs=59.3
Q ss_pred HHHHHHhcCCHHHHHHHhhhcC--CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH-H---HHHHHHHHh
Q 037236 614 IIDMYAKCGCLEQSRRVFDRLK--DK-DVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFT-F---VGILMACNH 686 (953)
Q Consensus 614 li~~y~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t-~---~~ll~a~~~ 686 (953)
|.-.|.-.|+-+....++..+. .. ++.-.-++.-|+...|+.+.+..+.+.+... +|... | .++..+|+.
T Consensus 496 LGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaG 572 (963)
T 4ady_A 496 MGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLAS---DESLLRYGGAFTIALAYAG 572 (963)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTT
T ss_pred HhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcC
Confidence 3334445566665555555433 11 2222223333444667777777777766652 23222 2 234445667
Q ss_pred cCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChh
Q 037236 687 AGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAG 743 (953)
Q Consensus 687 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~~~ 743 (953)
.|+.....+++..+..+ ...++.....+.-++.-.|+.+.+.++++.+....|+.
T Consensus 573 TGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~ 627 (963)
T 4ady_A 573 TGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAH 627 (963)
T ss_dssp SCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHH
T ss_pred CCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHH
Confidence 77766666677766542 11222222222223333455544555555443333433
No 242
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.95 E-value=47 Score=35.99 Aligned_cols=150 Identities=13% Similarity=-0.018 Sum_probs=81.2
Q ss_pred HHHhcCCCHHHHHHHHHHhhc-------CCCChhHHHHHHHHhccCCChhHHHHHHHHHhhhcCCCCCchhhhHHHHHH-
Q 037236 37 TLCEESKSLNKALSLLQENLH-------NADLKEATGVLLQACGHEKDIEIGKRVHELISASTQFSNDFIINTRLITMY- 108 (953)
Q Consensus 37 ~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Li~~y- 108 (953)
.+++ | ++++|++.+..+.+ ..........+++.|...++++...+....+.++.|..+.. -..+++.+
T Consensus 26 ~l~~-~-~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~ 101 (445)
T 4b4t_P 26 SLAQ-N-DCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVM 101 (445)
T ss_dssp --CH-H-HHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHH
T ss_pred HHHc-C-CHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHH
Confidence 3433 5 78888887765543 23346677888999999999988877666655344433222 22333322
Q ss_pred ---HhcCChh--hHHHHhhcCC---CCCc-------hhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCc-----ccH
Q 037236 109 ---SLCGFPL--DSRRVFDSLK---TRNL-------FQWNALVSGFTKNELYPDVLSIFVELLSDTELKPDN-----FTF 168 (953)
Q Consensus 109 ---~~~g~~~--~A~~~f~~~~---~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~-----~~~ 168 (953)
......+ .-..+.+.+. +.-. .....|...|...|++.+|..++..+.. .-...+. ..+
T Consensus 102 ~~l~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~-Et~~~~~~~~kve~~ 180 (445)
T 4b4t_P 102 EYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQV-ETYGSMEMSEKIQFI 180 (445)
T ss_dssp HHHHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HHCSSSCHHHHHHHH
T ss_pred HHHhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH-HHHhcccHHHHHHHH
Confidence 2223222 2223333322 1111 1234566677788888888888887664 1111111 134
Q ss_pred HHHHHHhhcCCChhhHhHHHHHH
Q 037236 169 PCVIKACGGIADVSFGSGVHGMA 191 (953)
Q Consensus 169 ~~ll~~~~~~~~~~~a~~~~~~~ 191 (953)
...++.|...+++..|..+...+
T Consensus 181 l~q~rl~l~~~d~~~a~~~~~ki 203 (445)
T 4b4t_P 181 LEQMELSILKGDYSQATVLSRKI 203 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH
Confidence 45555666666666666665554
No 243
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=84.72 E-value=19 Score=31.21 Aligned_cols=84 Identities=15% Similarity=0.048 Sum_probs=59.7
Q ss_pred hcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037236 620 KCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQ 699 (953)
Q Consensus 620 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~ 699 (953)
+||++......+-.+.. +....+.-+..+...|+-++-.+++..+... ..|++.....+.+||.+.|+..++.+++.+
T Consensus 73 ~C~NlKrVi~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~ 150 (172)
T 1wy6_A 73 KCQNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIE 150 (172)
T ss_dssp GCSCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 46666666666655543 3344555667778888888888888885442 467888888888899999998888888888
Q ss_pred HHHhcCC
Q 037236 700 MQKLHAV 706 (953)
Q Consensus 700 m~~~~~~ 706 (953)
+.+ .|+
T Consensus 151 AC~-kG~ 156 (172)
T 1wy6_A 151 ACK-KGE 156 (172)
T ss_dssp HHH-TTC
T ss_pred HHH-hhh
Confidence 865 444
No 244
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=84.63 E-value=6.8 Score=38.64 Aligned_cols=124 Identities=16% Similarity=0.078 Sum_probs=77.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhcCC
Q 037236 647 GGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDMLGRAGK 725 (953)
Q Consensus 647 ~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~~~g~ 725 (953)
....+.|+.++|++....-++. .| |...-..++..++-.|+++.|.+-++...+ +.|+...-..+..-+.++..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~---l~p~~~~~a~~yr~lI~aE~ 79 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKAAQ 79 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCchhhHHHHHHHHHHHHHH
Confidence 3456788999999998888884 67 777777888899999999999998888865 56663322222122222211
Q ss_pred HHHHHHHHHh--CCC-CCChhHH-HHHHHHH--HhcCChhHHHHHHHHHhccCCCCcc
Q 037236 726 LDDAFKLIIE--MPE-EADAGIW-SSLLRSC--RTYGALKMGEKVAKTLLELEPDKAE 777 (953)
Q Consensus 726 ~~eA~~~~~~--~~~-~~~~~~~-~~ll~~~--~~~g~~~~a~~~~~~~~~l~p~~~~ 777 (953)
..+ ++|.. .|. --.+.-| ..|+.+. ...|+.+.|...-+++++.-|..++
T Consensus 80 ~R~--~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 80 ARK--DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp HHH--HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred HHH--HHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 111 12221 111 0112224 3444443 3468888888888888888876665
No 245
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=84.25 E-value=8 Score=34.29 Aligned_cols=100 Identities=11% Similarity=0.126 Sum_probs=72.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCh------HHHHHHHHHHHHCCCCCCH----HHHHHHHH---HHHhcCCHHHHHHHHHHHH
Q 037236 635 KDKDVTSWNAIIGGHGIHGYG------KEAIELFEKMLALGHKPDT----FTFVGILM---ACNHAGLVENGLKYFSQMQ 701 (953)
Q Consensus 635 ~~~~~~~~~~li~~~~~~g~~------~~A~~l~~~m~~~g~~P~~----~t~~~ll~---a~~~~g~~~~a~~~~~~m~ 701 (953)
.+.|..+|-..+...-+.|+. ++..++|++.... +.|+. ..|..+.- .+...+++++|.++|+.++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 366888999999988888998 8889999999885 66642 11221111 1234489999999999997
Q ss_pred HhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 037236 702 KLHAVKPKLEHYACVVDMLGRAGKLDDAFKLIIEMP 737 (953)
Q Consensus 702 ~~~~~~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~ 737 (953)
+. +-+- ...|-.....-.|.|+++.|.+++.+..
T Consensus 88 ~~-hKkF-AKiwi~~AqFEiRqgnl~kARkILg~Ai 121 (161)
T 4h7y_A 88 AN-CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAV 121 (161)
T ss_dssp HH-CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HH-hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence 64 2222 6666666777789999999999997653
No 246
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=83.61 E-value=59 Score=37.03 Aligned_cols=83 Identities=10% Similarity=-0.042 Sum_probs=46.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHh---
Q 037236 544 MIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAK--- 620 (953)
Q Consensus 544 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~--- 620 (953)
....+.-.|+++.|++++-+. ...+.+.+...|.-+.-++. +..++..-. + . ...-+..||..|.+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~lls~~~--~-~-~~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSSTRLTKK--P-K-RDIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCcccccCC--C-c-ccccHHHHHHHHHHHhh
Confidence 345566689999999887754 35677777777766554442 111111100 1 1 12336677888875
Q ss_pred cCCHHHHHHHhhhcCCC
Q 037236 621 CGCLEQSRRVFDRLKDK 637 (953)
Q Consensus 621 ~g~~~~A~~~~~~~~~~ 637 (953)
..+..+|.+.|--+..+
T Consensus 369 ~td~~~Al~Y~~li~l~ 385 (661)
T 2qx5_A 369 YSDPRVAVEYLVLITLN 385 (661)
T ss_dssp TTCHHHHHHHHHGGGGS
T ss_pred cCCHHHHHHHHHHHhcc
Confidence 57888888887766533
No 247
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=80.64 E-value=84 Score=35.78 Aligned_cols=82 Identities=12% Similarity=0.014 Sum_probs=43.2
Q ss_pred HHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccchhhHHHHHHHHhCCCCchhhHhhHHHHHHh---
Q 037236 443 LICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHGFVIRNGLEGDSFTGISLLSLYMH--- 519 (953)
Q Consensus 443 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~--- 519 (953)
....+.-.|+++.|++++-.. ...|.+.+...+..+.-.+- ...+ ..........-+..||..|.+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~l----ls~~~~~~~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSST----RLTKKPKRDIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCcc----cccCCCcccccHHHHHHHHHHHhh
Confidence 345566689999999988755 35566666666665544432 1111 111000112235567777765
Q ss_pred cCChhHHHHHHHhccc
Q 037236 520 CEKSSSARVLFDEMED 535 (953)
Q Consensus 520 ~g~~~~A~~~f~~~~~ 535 (953)
..+..+|...|--+.-
T Consensus 369 ~td~~~Al~Y~~li~l 384 (661)
T 2qx5_A 369 YSDPRVAVEYLVLITL 384 (661)
T ss_dssp TTCHHHHHHHHHGGGG
T ss_pred cCCHHHHHHHHHHHhc
Confidence 5677777777666543
No 248
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=80.53 E-value=8.7 Score=41.05 Aligned_cols=69 Identities=12% Similarity=0.119 Sum_probs=56.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----hcCCCCChhH
Q 037236 642 WNAIIGGHGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQMQK----LHAVKPKLEH 712 (953)
Q Consensus 642 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~ 712 (953)
...++..+...|++++|+..++++.. ..| +...+..++.++...|+..+|++.|+...+ ..|+.|+..+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~--~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 34567778889999999999999887 577 788899999999999999999999888644 4688998654
No 249
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=80.07 E-value=11 Score=40.15 Aligned_cols=163 Identities=10% Similarity=0.009 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhhhcC--------CCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHHCCCCCCHHHHH--
Q 037236 610 VACSIIDMYAKCGCLEQSRRVFDRLK--------DKDVTSWNAIIGGHGI-HGYGKEAIELFEKMLALGHKPDTFTFV-- 678 (953)
Q Consensus 610 ~~~~li~~y~~~g~~~~A~~~~~~~~--------~~~~~~~~~li~~~~~-~g~~~~A~~l~~~m~~~g~~P~~~t~~-- 678 (953)
....|...|.+.|+.++..+++.... .+....-..++..+.. .|..+.-.++..+.++- .+-+..+|.
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~-a~~~~r~flr~ 99 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEW-AKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH-HHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH-HHHHHHHHHHH
Q ss_pred ----HHHHHHHhcCCHHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChh-HHHHHH
Q 037236 679 ----GILMACNHAGLVENGLKYFSQMQKLHAVKPK----LEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAG-IWSSLL 749 (953)
Q Consensus 679 ----~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~~~-~~~~ll 749 (953)
-++..|...|++.+|.+++..+.+...-..+ .+.|..-+.+|...|++.++...+.+...-+++. .--.+.
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Q ss_pred HHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHH-hcCCchHHHHHH
Q 037236 750 RSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYA-GSEKWDDVRMMR 799 (953)
Q Consensus 750 ~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~-~~g~~~~a~~~~ 799 (953)
+.....+ |-++. ..++|.+|...+
T Consensus 180 a~i~~~~--------------------------Gi~~l~~~rdyk~A~~~F 204 (394)
T 3txn_A 180 GALDLQS--------------------------GILHAADERDFKTAFSYF 204 (394)
T ss_dssp HHHHHHH--------------------------HHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHh--------------------------hHHHHHhccCHHHHHHHH
No 250
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=79.51 E-value=32 Score=30.19 Aligned_cols=69 Identities=13% Similarity=0.018 Sum_probs=50.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCC
Q 037236 670 HKPDTFTFVGILMACNHAGLV---ENGLKYFSQMQKLHAVKPK--LEHYACVVDMLGRAGKLDDAFKLIIEMPE-EAD 741 (953)
Q Consensus 670 ~~P~~~t~~~ll~a~~~~g~~---~~a~~~~~~m~~~~~~~p~--~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~~ 741 (953)
-.|+..|-..+..++.++... .+|+.+++...+. .|+ .+..-.|.-++.|.|++++|.++.+.+.. +|+
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~---~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~ 109 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE---AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 109 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH---CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc---CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 357777777788888887764 4688888888763 342 45555677789999999999999987753 564
No 251
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=79.26 E-value=14 Score=29.91 Aligned_cols=60 Identities=13% Similarity=0.098 Sum_probs=44.9
Q ss_pred HHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 037236 616 DMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFV 678 (953)
Q Consensus 616 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~ 678 (953)
..+...|++++|..+.+...-||+..|-++-. .+.|..+++..-+.++..+| .|....|.
T Consensus 47 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 47 SSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 34567899999999998888899999977654 56788888888777777765 55544443
No 252
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=79.01 E-value=14 Score=29.84 Aligned_cols=59 Identities=17% Similarity=0.213 Sum_probs=42.1
Q ss_pred HHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 037236 616 DMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTF 677 (953)
Q Consensus 616 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~ 677 (953)
..+...|++++|..+.+...-||+..|-++-. .+.|..+++..-+.++..+| .|....|
T Consensus 48 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~F 106 (116)
T 2p58_C 48 SSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ-DPRIQTF 106 (116)
T ss_dssp HHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC-CHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 34556888888888888888888888877654 45677777777777776665 5544444
No 253
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=78.96 E-value=15 Score=45.63 Aligned_cols=142 Identities=12% Similarity=-0.002 Sum_probs=78.1
Q ss_pred HHHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCCC---------C----------
Q 037236 578 SILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKDK---------D---------- 638 (953)
Q Consensus 578 ~ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---------~---------- 638 (953)
.++..|...+..+.++++.... +.++...-.+..+|..+|++++|...|.+.... .
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 4555555666666665544332 224444455667788888888888888876410 0
Q ss_pred -------HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CC-CHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC
Q 037236 639 -------VTSWNAIIGGHGIHGYGKEAIELFEKMLALGH-KP-DTF--TFVGILMACNHAGLVENGLKYFSQMQKLHAVK 707 (953)
Q Consensus 639 -------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~P-~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 707 (953)
..-|.-++..+-++|.++.++++-...++..- .+ +.. .|..+..++...|++++|...+-.+- +. .
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~p-d~--~ 968 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLS-TT--P 968 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHH-HS--S
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCC-CH--H
Confidence 01244455566666666666666665554311 11 111 35556666666777777666665552 11 1
Q ss_pred CChhHHHHHHHHHhhcCCHH
Q 037236 708 PKLEHYACVVDMLGRAGKLD 727 (953)
Q Consensus 708 p~~~~~~~lv~~l~~~g~~~ 727 (953)
-.......||..++..|.++
T Consensus 969 ~r~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 969 LKKSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp SCHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHhCCChh
Confidence 12345555666666655543
No 254
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=78.20 E-value=18 Score=31.22 Aligned_cols=71 Identities=14% Similarity=0.047 Sum_probs=53.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCCh
Q 037236 669 GHKPDTFTFVGILMACNHAGLV---ENGLKYFSQMQKLHAVKPK--LEHYACVVDMLGRAGKLDDAFKLIIEMPE-EADA 742 (953)
Q Consensus 669 g~~P~~~t~~~ll~a~~~~g~~---~~a~~~~~~m~~~~~~~p~--~~~~~~lv~~l~~~g~~~eA~~~~~~~~~-~~~~ 742 (953)
+-.|+..|-..+..++.++... .+|+.+++...+. .|. .+.+-.|.-++.|.|++++|.+..+.+.. +|+-
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~---~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N 111 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE---AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 111 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTC
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc---CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCC
Confidence 3456777777788888887765 4688888888763 253 55666677889999999999999988754 5653
No 255
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=75.69 E-value=15 Score=33.30 Aligned_cols=65 Identities=8% Similarity=-0.013 Sum_probs=47.6
Q ss_pred CCCCcccHHHHHHHHHhcCCCHHHHHHHHHHhhc---CCCCh-------hHHHHHHHHhccCCChhHHHHHHHHHh
Q 037236 24 ASTEGLHFLQEITTLCEESKSLNKALSLLQENLH---NADLK-------EATGVLLQACGHEKDIEIGKRVHELIS 89 (953)
Q Consensus 24 ~~~~~~~~~~~i~~~~~~~~~~~~a~~~~~~~~~---~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~ 89 (953)
|..+-+.+-..+..+...+ .++.|+.+.+.+.. ..|+. .++..+..++...+.+..|...+.+.+
T Consensus 16 ~~~~~~~l~dqik~L~d~~-LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 16 PRGSHMNVIDHVRDMAAAG-LHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp -----CCHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3445677888899999999 99999988887766 33331 256667788888999999999888865
No 256
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=75.08 E-value=5.2 Score=42.81 Aligned_cols=67 Identities=13% Similarity=0.090 Sum_probs=53.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHH-----HCCCccCC
Q 037236 745 WSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMK-----ERGLQKEA 811 (953)
Q Consensus 745 ~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~-----~~~~~~~~ 811 (953)
...++.++...|+.+.+...++.+++.+|-+...|..|..+|...|+..+|.+.++..+ +.|+.+.|
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~ 245 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 245 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 34456667778888888888889999999999999999999999999999988776654 34766544
No 257
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=73.65 E-value=11 Score=43.68 Aligned_cols=50 Identities=10% Similarity=-0.083 Sum_probs=33.7
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037236 649 HGIHGYGKEAIELFEKMLALGHKP-DTFTFVGILMACNHAGLVENGLKYFSQM 700 (953)
Q Consensus 649 ~~~~g~~~~A~~l~~~m~~~g~~P-~~~t~~~ll~a~~~~g~~~~a~~~~~~m 700 (953)
+...|+++-|+++-++... ..| +-.||..|..+|...|+++.|+-.++.+
T Consensus 347 Ll~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 4456677777777777666 466 4566777777777777777777666655
No 258
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=72.80 E-value=0.84 Score=25.30 Aligned_cols=17 Identities=35% Similarity=0.985 Sum_probs=14.3
Q ss_pred cccccccc--cCCcCCcch
Q 037236 932 HHFRDGVC--SCGDIGSCW 948 (953)
Q Consensus 932 h~~~~g~c--sc~~~~~~~ 948 (953)
-+|.+|.| .||+-|.|-
T Consensus 7 v~fgngfcgdncgnswacs 25 (27)
T 2hgo_A 7 VNFGNGFCGDNCGNSWACS 25 (27)
T ss_dssp EEETTTEEECSSSCEEECS
T ss_pred EeecCccccCCcCCccccc
Confidence 36899999 799999884
No 259
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=72.47 E-value=1.1e+02 Score=33.00 Aligned_cols=95 Identities=12% Similarity=0.040 Sum_probs=67.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-cCCC--CC--hh
Q 037236 642 WNAIIGGHGIHGYGKEAIELFEKMLAL--GHKPD---TFTFVGILMACNHAGLVENGLKYFSQMQKL-HAVK--PK--LE 711 (953)
Q Consensus 642 ~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~P~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~~--p~--~~ 711 (953)
...|...|-..|++.+|..++.++... |..+. ...+...+..|...+++..|..+.+++... .... |+ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 445677788888999998888887643 22221 234666677889999999999998887432 2222 22 45
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC
Q 037236 712 HYACVVDMLGRAGKLDDAFKLIIEM 736 (953)
Q Consensus 712 ~~~~lv~~l~~~g~~~eA~~~~~~~ 736 (953)
.|.+++..+...+++.+|-..|.+.
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 6788899999999999998777654
No 260
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=69.02 E-value=22 Score=28.76 Aligned_cols=74 Identities=12% Similarity=0.026 Sum_probs=52.3
Q ss_pred ChhhHhHHHHHHHHhCCCCChhHHHHHHHHhhccCChHHHHHHhccCCCCCeecHHHHHHHHHcCCCchHHHHHHHHh
Q 037236 180 DVSFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGSSENGFSCESFDLLIKM 257 (953)
Q Consensus 180 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 257 (953)
..++|..+-+.+...|- ...+--.-+..+.+.|++++|..+.+...-||.++|-++-.+ +.|..+++..-+.++
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~l 94 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGL 94 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHH
Confidence 34555555555554443 333333445567789999999999999999999999887654 677777777777677
No 261
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=69.00 E-value=23 Score=28.67 Aligned_cols=74 Identities=8% Similarity=-0.041 Sum_probs=51.8
Q ss_pred ChhhHhHHHHHHHHhCCCCChhHHHHHHHHhhccCChHHHHHHhccCCCCCeecHHHHHHHHHcCCCchHHHHHHHHh
Q 037236 180 DVSFGSGVHGMAAKMGLIGDVFVSNALIAMYGKCAFVEEMVKLFEVMPERNLVSWNSIICGSSENGFSCESFDLLIKM 257 (953)
Q Consensus 180 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 257 (953)
..++|..+-+.+...|- ...+--.-+..+.+.|++++|..+.+...-||.++|-++-.+ +.|..+++..-+.++
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~l 95 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRL 95 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHH
Confidence 34555555555554443 333333445567789999999999999999999999887654 557677777777677
No 262
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=68.20 E-value=79 Score=29.61 Aligned_cols=89 Identities=21% Similarity=0.119 Sum_probs=36.4
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 037236 607 DAFVACSIIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNH 686 (953)
Q Consensus 607 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~ 686 (953)
+..+-...+..+++.|..+....+...+..++...-...+.++...|.. +++..+.++.. .||...-...+.++..
T Consensus 94 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~ 169 (211)
T 3ltm_A 94 DGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGE 169 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 3333344444444444433233333333344444444444444444442 23333333332 3444444444444444
Q ss_pred cCCHHHHHHHHHHH
Q 037236 687 AGLVENGLKYFSQM 700 (953)
Q Consensus 687 ~g~~~~a~~~~~~m 700 (953)
.+. .++...+..+
T Consensus 170 ~~~-~~~~~~L~~~ 182 (211)
T 3ltm_A 170 IGG-ERVRAAMEKL 182 (211)
T ss_dssp HCS-HHHHHHHHHH
T ss_pred hCc-hhHHHHHHHH
Confidence 443 2333333333
No 263
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=67.16 E-value=2.1e+02 Score=34.06 Aligned_cols=305 Identities=14% Similarity=0.059 Sum_probs=153.9
Q ss_pred HHHhcCCcccHHHHhccCCCC----Ch--hhHHHHHHHHHhcCChHHHHHHHHHhhhCCC--CCC---cch--HHHHHHh
Q 037236 415 AYAKCGSEISAENVFHGMDSR----TV--SSWNALICGYAQNGDHLKALDYFLQMTHSDL--EPD---LFS--IGSLILA 481 (953)
Q Consensus 415 ~y~~~g~~~~A~~~f~~~~~~----~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~---~~t--~~~ll~~ 481 (953)
+....|+.+++..+++..... +. ..-..+.-|....|...++++++...+...- .-+ ... -..+--+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 456778889999999876541 22 2233445567777777788888877665321 000 111 1111111
Q ss_pred hcccccc-chhhHHHHHHHHhCCC-CchhhHhhHHHHHHhcCChhHHHHHHHhcccC--C-cccHHHHHHHHHhcCChhH
Q 037236 482 CTHLKSL-HRGKEIHGFVIRNGLE-GDSFTGISLLSLYMHCEKSSSARVLFDEMEDK--S-LVSWNTMIAGYSQNKLPVE 556 (953)
Q Consensus 482 ~~~~~~~-~~a~~i~~~~~~~g~~-~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~--~-~~~~~~li~~~~~~g~~~~ 556 (953)
.+-.|.- +.+.+.+..++...-. ......-+|.-.|.-.|+.+....++..+.+. + +.-.-++.-|+...|+.+.
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~ 542 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQEL 542 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGG
T ss_pred HHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHH
Confidence 1112221 2333444443332110 00112223444455667777777776654432 1 1222333345557888888
Q ss_pred HHHHHHHHHHcCCCCChhhHHH---HHHHhccccchHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHhhh
Q 037236 557 AIVLFRRMFSIGVQPCEISIVS---ILSACSQLSALRLGKETHCYALKAILTNDAFVACSIIDMYAKCGCLEQSRRVFDR 633 (953)
Q Consensus 557 A~~~~~~m~~~g~~p~~~t~~~---ll~a~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 633 (953)
+-.+.+.+... .....-|.. +.-+|+..|+.....+++..+..... .++.-...+.-++.-.|+.+.+.++++.
T Consensus 543 ~~~li~~L~~~--~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~-d~VRraAViaLGlI~~g~~e~v~rlv~~ 619 (963)
T 4ady_A 543 ADDLITKMLAS--DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSN-DDVRRAAVIALGFVLLRDYTTVPRIVQL 619 (963)
T ss_dssp GHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHTSSSCSSHHHHTTT
T ss_pred HHHHHHHHHhC--CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCc-HHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence 88888887763 222233433 23367888888877778887776421 1222222222233345666667777775
Q ss_pred cC-CCCHHHHH--HHHHHHHhcCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cC-------CHHHHHHHHHHH
Q 037236 634 LK-DKDVTSWN--AIIGGHGIHGYG-KEAIELFEKMLALGHKPDTFTFVGILMACNH--AG-------LVENGLKYFSQM 700 (953)
Q Consensus 634 ~~-~~~~~~~~--~li~~~~~~g~~-~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~--~g-------~~~~a~~~~~~m 700 (953)
+. ..|...-. ++.-|....|.. .+|+.++..+.. .+|..+-..-+.++.. .| ++..-++.+...
T Consensus 620 L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~ 696 (963)
T 4ady_A 620 LSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSV 696 (963)
T ss_dssp GGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHH
Confidence 54 33443332 333344444443 678888888876 5665554444434332 22 344444444443
Q ss_pred HHhcCCCCChhHHHHHHHHHhhcCC
Q 037236 701 QKLHAVKPKLEHYACVVDMLGRAGK 725 (953)
Q Consensus 701 ~~~~~~~p~~~~~~~lv~~l~~~g~ 725 (953)
..+..-.|+...-..+...+..+|.
T Consensus 697 ~~dk~~d~~~~fga~iAqGll~aG~ 721 (963)
T 4ady_A 697 ITNKHQEGLAKFGACVAQGIMNAGG 721 (963)
T ss_dssp HHCSSSCHHHHHHHHHHHHHHTTGG
T ss_pred HhcccccHHHHHHHHHHHHHHhcCC
Confidence 3322223334444455555555553
No 264
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=67.01 E-value=1.1e+02 Score=30.95 Aligned_cols=166 Identities=9% Similarity=0.028 Sum_probs=92.9
Q ss_pred hHHHHHHhcCChhHHHHHHHhcccCCcccHHHHHHHHHhcCChhHHHHH----HHHHHHcCCCCChhhHHHHHHHhcccc
Q 037236 512 SLLSLYMHCEKSSSARVLFDEMEDKSLVSWNTMIAGYSQNKLPVEAIVL----FRRMFSIGVQPCEISIVSILSACSQLS 587 (953)
Q Consensus 512 ~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~a~~~~~ 587 (953)
++..-|.+.+++++|.+++..- ...+.+.|+...|-.+ .+-..+.+++++..+...++..+....
T Consensus 38 tl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p 106 (312)
T 2wpv_A 38 TIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELD 106 (312)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 3444567777777777764332 2234455555544443 333444567777766666665554432
Q ss_pred c-----hHHHHHHHHHHHHcC--CCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhc---CChHH
Q 037236 588 A-----LRLGKETHCYALKAI--LTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIH---GYGKE 657 (953)
Q Consensus 588 ~-----~~~a~~~~~~~~~~~--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~ 657 (953)
. ..-......+..+.| ...++.....+...|.+.|++.+|+..|-.-...+...+..|+.-+... |...+
T Consensus 107 ~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e 186 (312)
T 2wpv_A 107 PSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDST 186 (312)
T ss_dssp TTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred CCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcch
Confidence 1 112222333333333 2247788899999999999999999988643333455555555544443 43333
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 037236 658 AIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKL 703 (953)
Q Consensus 658 A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 703 (953)
+ |...-.+++ -|.-.|++..|..+|+...+.
T Consensus 187 ~--------------dlf~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 187 V--------------AEFFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp H--------------HHHHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred H--------------HHHHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 2 111112222 244578888888888877544
No 265
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=64.78 E-value=1.9e+02 Score=32.71 Aligned_cols=134 Identities=6% Similarity=-0.084 Sum_probs=73.3
Q ss_pred HhcCCCHHHHHHHHHHhhcCCCCh-hHHHHHHHHhccCCChhHHHHHHHHHhhhcCCCCCchhhhHHHHHHHhcCChhhH
Q 037236 39 CEESKSLNKALSLLQENLHNADLK-EATGVLLQACGHEKDIEIGKRVHELISASTQFSNDFIINTRLITMYSLCGFPLDS 117 (953)
Q Consensus 39 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Li~~y~~~g~~~~A 117 (953)
.+.| +...+..+...+...|..+ -.|..|...+ ......+ +...+.+-.+.+....+-+.-+..+.+.+++...
T Consensus 17 ~~~~-~~~~~~~l~~~l~~~pL~~yl~y~~l~~~l-~~~~~~e---v~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~ 91 (618)
T 1qsa_A 17 WDNR-QMDVVEQMMPGLKDYPLYPYLEYRQITDDL-MNQPAVT---VTNFVRANPTLPPARTLQSRFVNELARREDWRGL 91 (618)
T ss_dssp HHTT-CHHHHHHHSGGGTTSTTHHHHHHHHHHHTG-GGCCHHH---HHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHCC-CHHHHHHHHHhhcCCCcHHHHHHHHHHhCc-ccCCHHH---HHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHH
Confidence 3455 6766666655543322211 1233333222 1223443 3333331123333345556667778889999999
Q ss_pred HHHhhcCCCCCchhHHHHHHHHhcCCChhhHHHHHHHhHhcCCCCCCcccHHHHHHHhhcCCC
Q 037236 118 RRVFDSLKTRNLFQWNALVSGFTKNELYPDVLSIFVELLSDTELKPDNFTFPCVIKACGGIAD 180 (953)
Q Consensus 118 ~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~g~~p~~~~~~~ll~~~~~~~~ 180 (953)
..+|.. +..+...-.....+....|+..+|......+.. .| ...+..+..++..+...|.
T Consensus 92 l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~-~~-~~~p~~c~~l~~~~~~~g~ 151 (618)
T 1qsa_A 92 LAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWL-TG-KSQPNACDKLFSVWRASGK 151 (618)
T ss_dssp HHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHS-CS-SCCCTHHHHHHHHHHHTTC
T ss_pred HHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh-CC-CCCcHHHHHHHHHHHHCCC
Confidence 997776 433444445566777888998888888888776 33 2233445555555544443
No 266
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=63.61 E-value=1.4e+02 Score=30.66 Aligned_cols=165 Identities=9% Similarity=-0.032 Sum_probs=91.9
Q ss_pred hHHHHHHhcCChhHHHHHHHhcccCCcccHHHHHHHHHhcCChhHHHHHH----HHHHHcCCCCChhhHHHHHHHhcccc
Q 037236 512 SLLSLYMHCEKSSSARVLFDEMEDKSLVSWNTMIAGYSQNKLPVEAIVLF----RRMFSIGVQPCEISIVSILSACSQLS 587 (953)
Q Consensus 512 ~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~a~~~~~ 587 (953)
++..-|.+.+++++|.+++-.- ...+.+.|+...|-.+- +-..+.++++|..+...++..+....
T Consensus 40 Ti~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~ 108 (336)
T 3lpz_A 40 LVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQ 108 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSC
T ss_pred HHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 3444467777777777764321 22344455554443333 44445667777766666666555544
Q ss_pred chH-----HHHHHHHHHHHcC--CCCCccHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCChHHHHH
Q 037236 588 ALR-----LGKETHCYALKAI--LTNDAFVACSIIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIE 660 (953)
Q Consensus 588 ~~~-----~a~~~~~~~~~~~--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 660 (953)
.-+ -..+...+-.+.| ..-|+.....+...|.+.|++.+|+..|-.-.++.+..+..|+.-+...+...
T Consensus 109 ~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~---- 184 (336)
T 3lpz_A 109 PGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESH---- 184 (336)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGG----
T ss_pred CCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCc----
Confidence 321 1122233334433 34477888889999999999999999985322333356655554444433211
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037236 661 LFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQK 702 (953)
Q Consensus 661 l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 702 (953)
.+|...-.+++ -|.-.+++..|...|+...+
T Consensus 185 ----------e~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 185 ----------TAPLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp ----------GHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred ----------cHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 11222223333 34556788888887776654
No 267
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=63.28 E-value=76 Score=39.35 Aligned_cols=53 Identities=15% Similarity=0.152 Sum_probs=24.2
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCCC---CCC----hhHHHHHHHHHHhcCChhHHHHHH
Q 037236 713 YACVVDMLGRAGKLDDAFKLIIEMPE---EAD----AGIWSSLLRSCRTYGALKMGEKVA 765 (953)
Q Consensus 713 ~~~lv~~l~~~g~~~eA~~~~~~~~~---~~~----~~~~~~ll~~~~~~g~~~~a~~~~ 765 (953)
|.-++..+-+.|.++.+.++.+.... +.+ ...|..+...+...|++++|-.++
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL 961 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVAL 961 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 44455555555555555555432211 111 114555555555555555554443
No 268
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=62.80 E-value=51 Score=26.85 Aligned_cols=63 Identities=14% Similarity=0.213 Sum_probs=47.9
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 037236 654 YGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVD 718 (953)
Q Consensus 654 ~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~ 718 (953)
+.-+..+-++.+....+-|++....+.+.||.+.+++.-|.++|+.+..+- .+....|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~--~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCchhhHHHHHH
Confidence 444566667777777788999999999999999999999999999885543 333456776654
No 269
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=61.92 E-value=29 Score=28.24 Aligned_cols=60 Identities=18% Similarity=0.322 Sum_probs=42.8
Q ss_pred CCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCc
Q 037236 737 PEEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKERGLQ 808 (953)
Q Consensus 737 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 808 (953)
-.-|++.+..+-+.+|++.+|+..|.+.++-+-..-.+...+|-.+. .+++-.+.+.|+.
T Consensus 40 DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l------------qElkPtl~ELGI~ 99 (109)
T 1v54_E 40 DLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI------------QELRPTLNELGIS 99 (109)
T ss_dssp SBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH------------HHHHHHHHHHTCC
T ss_pred ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH------------HHHhhHHHHhCCC
Confidence 34699999999999999999999999999987765444444444331 2355555666664
No 270
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=57.98 E-value=30 Score=34.10 Aligned_cols=57 Identities=23% Similarity=0.314 Sum_probs=28.8
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-ChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCc
Q 037236 720 LGRAGKLDDAFKLIIEM-PEEA-DAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKA 776 (953)
Q Consensus 720 l~~~g~~~eA~~~~~~~-~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~ 776 (953)
+.+.|.+++|++.++.- ...| |...=..|+.-++..|+.+.|..-++.+.+++|+..
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~ 65 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 65 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence 44556666665544322 2233 333334444455555666666666666555555433
No 271
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.08 E-value=34 Score=36.98 Aligned_cols=97 Identities=9% Similarity=-0.003 Sum_probs=67.8
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHhhhcC------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCHHH--H
Q 037236 609 FVACSIIDMYAKCGCLEQSRRVFDRLK------DKDVTSWNAIIGGHGIHGYGKEAIELFEKMLAL---GHKPDTFT--F 677 (953)
Q Consensus 609 ~~~~~li~~y~~~g~~~~A~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~P~~~t--~ 677 (953)
.....+.+.|.++|+++.|.+.|.++. ..-+..|-.+|..+...+++..+...++++... +-.|+... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 356678899999999999999998876 234457777888888899999999888887542 33333222 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhcC
Q 037236 678 VGILMACNHAGLVENGLKYFSQMQKLHA 705 (953)
Q Consensus 678 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 705 (953)
..-+..+...+++.+|.+.|-++...+.
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 1122234567888888888877766544
No 272
>1ews_A RK-1 defensin, alpha-defisin; alpha defensin, triple-stranded beta-sheet, antimicrobial protein; NMR {Oryctolagus cuniculus} SCOP: g.9.1.1
Probab=56.84 E-value=1.9 Score=24.77 Aligned_cols=14 Identities=36% Similarity=0.928 Sum_probs=11.9
Q ss_pred cccCCcCCcchhhh
Q 037236 938 VCSCGDIGSCWQMI 951 (953)
Q Consensus 938 ~csc~~~~~~~~~~ 951 (953)
-|||+.|.+-|..|
T Consensus 2 pcsckkycdpwevi 15 (32)
T 1ews_A 2 PCSCKKYCDPWEVI 15 (32)
T ss_dssp CSEEESSCCTTEEE
T ss_pred CcccccccChhhee
Confidence 39999999999765
No 273
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=54.11 E-value=1.4e+02 Score=27.63 Aligned_cols=141 Identities=14% Similarity=0.082 Sum_probs=58.5
Q ss_pred CCchHHHHHHHhhHhcCChhHHHHHHhcCCCCCcccHHHHHHHHHcCCChhHHHHHHHHHHhccCCCCCchhhHHHHHHH
Q 037236 301 RELMVNNALVDMYAKCGFLSEAQILFDKNNNKNVVSWNTIIGAFSMAGDVCGTFDLLRKMQMKEEEMKPNEVTVLNVLTS 380 (953)
Q Consensus 301 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~p~~~t~~~ll~~ 380 (953)
+|..+-...+..+.+.|..+....+.+.+..+|...-...+.++...+.. +++..+..+. -.|+...-...+.+
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~-~~~~~L~~~l-----~d~~~~vr~~a~~a 99 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE-RAVEPLIKAL-----KDEDGWVRQSAAVA 99 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHT-----TCSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-HHHHHHHHHH-----cCCCHHHHHHHHHH
Confidence 34444444444445555444444444444444444333444444444443 2333333333 22444444444444
Q ss_pred hccccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCCcccHHHHhccCCCCChhhHHHHHHHHHhcC
Q 037236 381 CSEKSELLSLKELHGYSLRHGFDNDELVANAFVVAYAKCGSEISAENVFHGMDSRTVSSWNALICGYAQNG 451 (953)
Q Consensus 381 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 451 (953)
+...++.+....+...+ -.++..+....+.+..+.+..+....+...+..++...-...+.++.+.|
T Consensus 100 L~~~~~~~~~~~L~~~l----~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 166 (201)
T 3ltj_A 100 LGQIGDERAVEPLIKAL----KDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIG 166 (201)
T ss_dssp HHHHCCGGGHHHHHHHT----TCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred HHHhCcHHHHHHHHHHH----cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 44444432222222211 23455555555555555554333333333333344333334444444443
No 274
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=50.41 E-value=64 Score=27.86 Aligned_cols=62 Identities=15% Similarity=0.236 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 037236 655 GKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVD 718 (953)
Q Consensus 655 ~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~ 718 (953)
.-+..+-++.+....+-|++....+.+.+|.+.+++.-|.++|+.+..+ ..+....|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHH
Confidence 3445566667777778899999999999999999999999999988554 3344556776664
No 275
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=49.59 E-value=1.5e+02 Score=28.87 Aligned_cols=49 Identities=10% Similarity=-0.020 Sum_probs=29.6
Q ss_pred hcCCCchHHHHHHHHHHHhCCCCCch--HHHHHHHhhHhcCChhHHHHHHh
Q 037236 279 AGEGNVDLGILVHGLAVKLGLTRELM--VNNALVDMYAKCGFLSEAQILFD 327 (953)
Q Consensus 279 ~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~f~ 327 (953)
+..++......+...+.+.|..++.. ...+.+...++.|+.+-+..+++
T Consensus 190 ~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 190 LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 34455455566777777777655432 22334455566788877777777
No 276
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=49.42 E-value=99 Score=31.33 Aligned_cols=33 Identities=6% Similarity=-0.005 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHhccCCC
Q 037236 742 AGIWSSLLRSCRTYGALKMGEKVAKTLLELEPD 774 (953)
Q Consensus 742 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~ 774 (953)
..++.+-++.+.+++|+..|...+++++++.|.
T Consensus 207 ~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 239 (325)
T 3mv2_A 207 TNALQVAMSQHFKHKNFLQASYFAGEFLKIISS 239 (325)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 456777788899999999999999999999984
No 277
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=48.11 E-value=2e+02 Score=27.90 Aligned_cols=15 Identities=20% Similarity=0.423 Sum_probs=7.1
Q ss_pred HhcCChhHHHHHHhc
Q 037236 314 AKCGFLSEAQILFDK 328 (953)
Q Consensus 314 ~~~g~~~~A~~~f~~ 328 (953)
+..|+.+-...+++.
T Consensus 113 ~~~~~~~~~~~Ll~~ 127 (285)
T 1wdy_A 113 AVYGKVKALKFLYKR 127 (285)
T ss_dssp HHTTCHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHh
Confidence 344455544444444
No 278
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=46.41 E-value=1.8e+02 Score=26.76 Aligned_cols=80 Identities=20% Similarity=0.055 Sum_probs=35.1
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHH
Q 037236 635 KDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYA 714 (953)
Q Consensus 635 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 714 (953)
..++...-...+.++...|+. +++..+.++.. .|+...-...+.++...|. .++...+..+.++ ++...-.
T Consensus 117 ~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l~d----~~~~vr~ 187 (201)
T 3ltj_A 117 KDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGG-ERVRAAMEKLAET----GTGFARK 187 (201)
T ss_dssp TCSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHHH----CCHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHhC----CCHHHHH
Confidence 344444444444444444442 23333444433 3455555555555555554 3344444444432 3333333
Q ss_pred HHHHHHhhc
Q 037236 715 CVVDMLGRA 723 (953)
Q Consensus 715 ~lv~~l~~~ 723 (953)
..+.++.+.
T Consensus 188 ~A~~aL~~l 196 (201)
T 3ltj_A 188 VAVNYLETH 196 (201)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 344444443
No 279
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=46.41 E-value=21 Score=37.11 Aligned_cols=64 Identities=13% Similarity=0.131 Sum_probs=42.9
Q ss_pred HhhHHHHHHhcCChhHHHHHHHhcccCCc---ccHHHHHHHHHhcCC--hhHHHHHHHHHHHcCCCCCh
Q 037236 510 GISLLSLYMHCEKSSSARVLFDEMEDKSL---VSWNTMIAGYSQNKL--PVEAIVLFRRMFSIGVQPCE 573 (953)
Q Consensus 510 ~~~li~~y~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~ 573 (953)
.+.++.=|...|+.++|.+.++++..|.. +....+..++-+.++ .+...+++..+...|+-+..
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~ 288 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 288 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHH
Confidence 45677888899999999999999987632 234444445544333 34577788888777654433
No 280
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=44.53 E-value=2e+02 Score=26.72 Aligned_cols=76 Identities=17% Similarity=0.090 Sum_probs=43.3
Q ss_pred CCccHHHHHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 037236 606 NDAFVACSIIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIELFEKMLALGHKPDTFTFVGILMACN 685 (953)
Q Consensus 606 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~~~t~~~ll~a~~ 685 (953)
++..+-...+.++++.|..+....+..-+..++...-...+.++...|. .++...+.++.+ .++...-...+.++.
T Consensus 124 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~---d~~~~vr~~A~~aL~ 199 (211)
T 3ltm_A 124 EDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE---TGTGFARKVAVNYLE 199 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH---HCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh---CCCHHHHHHHHHHHH
Confidence 4555656666666666665433344444446676666666777777765 456666666665 244444444444433
No 281
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=43.84 E-value=74 Score=27.49 Aligned_cols=62 Identities=18% Similarity=0.306 Sum_probs=44.0
Q ss_pred hCCCCCChhHHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCc
Q 037236 735 EMPEEADAGIWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKERGLQ 808 (953)
Q Consensus 735 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 808 (953)
.+-.-|++.+..+-+.+|++.+|+..|.+.+|-+-..-.+....|-.+. .+++-.+.+.|+.
T Consensus 81 ~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l------------qElkPtl~ELGI~ 142 (152)
T 2y69_E 81 GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI------------QELRPTLNELGIS 142 (152)
T ss_dssp TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH------------HHHHHHHHHHTCC
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH------------HHHhhHHHHhCCC
Confidence 3444699999999999999999999999999987765433444444331 2355556666664
No 282
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=42.94 E-value=2.1e+02 Score=26.68 Aligned_cols=86 Identities=9% Similarity=0.185 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhc--cCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCccCCceeEEEeCCE
Q 037236 744 IWSSLLRSCRTYGALKMGEKVAKTLLE--LEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKERGLQKEAGCSWIELGGN 821 (953)
Q Consensus 744 ~~~~ll~~~~~~g~~~~a~~~~~~~~~--l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~~~~~~s~i~~~~~ 821 (953)
+|-.++..| ..++......+++.+.. +.-.-+..|...+..+-..|+|.+|..+++.-.+++-.|
T Consensus 82 lWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P------------ 148 (202)
T 3esl_A 82 IWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP------------ 148 (202)
T ss_dssp HHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS------------
T ss_pred HHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc------------
Confidence 444444433 13335566666666665 445677788899999999999999999988766655433
Q ss_pred EEEEeeCCCCCccHHHHHHHHHHHHHHHHhcCcc
Q 037236 822 IHSFVVGDNMHPEWEEIRGMWGRLEEQISKIGYK 855 (953)
Q Consensus 822 ~~~f~~~d~~hp~~~~i~~~l~~l~~~~~~~~~~ 855 (953)
.+.+.....+...+|...+.+
T Consensus 149 -------------~~rL~~~~~~F~~R~~~~~~~ 169 (202)
T 3esl_A 149 -------------YNRLLRSLSNYEDRLREMNIV 169 (202)
T ss_dssp -------------HHHHHHHHHHHHHHHHHTTCC
T ss_pred -------------HHHHHHHHHHHHHHHHhcCCC
Confidence 456777777888888877763
No 283
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=42.84 E-value=41 Score=29.07 Aligned_cols=64 Identities=14% Similarity=0.229 Sum_probs=44.9
Q ss_pred hHHHHHHHhcCChhhHHHHhhcCCCCCc---hhHHHHHHHHhcCCC--hhhHHHHHHHhHhcCCCCCCcc
Q 037236 102 TRLITMYSLCGFPLDSRRVFDSLKTRNL---FQWNALVSGFTKNEL--YPDVLSIFVELLSDTELKPDNF 166 (953)
Q Consensus 102 ~~Li~~y~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~g~~p~~~ 166 (953)
+.++.-|...|+.++|.+.++++..|.- +...++..++-+.+. .+.+..++..+.. .|+-+...
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~-~~~is~~q 79 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWK-SSTITIDQ 79 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHH-TTCSCHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH-CCCcCHHH
Confidence 4678889999999999999999876632 345566667766643 3567778888877 56544433
No 284
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.59 E-value=68 Score=34.53 Aligned_cols=96 Identities=10% Similarity=-0.036 Sum_probs=70.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHH----H
Q 037236 641 SWNAIIGGHGIHGYGKEAIELFEKMLALGHKPD--TFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHY----A 714 (953)
Q Consensus 641 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~----~ 714 (953)
++..+..-|.+.|+.++|.+.|.++...-..+. ...+..++..+...+++..+..+.+++.....-.++.... .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 456678889999999999999999998644443 3567788899999999999999999986554434443222 2
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC
Q 037236 715 CVVDMLGRAGKLDDAFKLIIEM 736 (953)
Q Consensus 715 ~lv~~l~~~g~~~eA~~~~~~~ 736 (953)
+-+-.+...+++.+|-+.|-+.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHH
Confidence 2233355678999998877554
No 285
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=42.34 E-value=8.3 Score=24.93 Aligned_cols=19 Identities=26% Similarity=0.468 Sum_probs=13.6
Q ss_pred cCCccccc-ccccccCCcCC
Q 037236 927 DNKRFHHF-RDGVCSCGDIG 945 (953)
Q Consensus 927 ~~~~~h~~-~~g~csc~~~~ 945 (953)
.|-.-|.. ++|.||||-|-
T Consensus 11 ~CPkPHRL~~~~~C~CG~y~ 30 (42)
T 2l0z_A 11 ACPLPHRLNSLGGCRCGKYP 30 (42)
T ss_dssp SCCTTSCCCTTSSBTTTTBC
T ss_pred CCCCCceecCCceecccccc
Confidence 34455665 57999999874
No 286
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=41.78 E-value=1.3e+02 Score=31.33 Aligned_cols=61 Identities=13% Similarity=0.153 Sum_probs=40.3
Q ss_pred HHHHHHHHhcCCHHHHHHHhhhcCCCC---HHHHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCC
Q 037236 612 CSIIDMYAKCGCLEQSRRVFDRLKDKD---VTSWNAIIGGHGIHGY--GKEAIELFEKMLALGHKP 672 (953)
Q Consensus 612 ~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~P 672 (953)
..++.=|...|+.++|.+.++++..|. .+...++..++-+.++ .+...+++..+...|+-+
T Consensus 221 ~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls 286 (358)
T 3eiq_C 221 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 286 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCC
Confidence 567778888899999999999887653 2344455555554333 345667777777766544
No 287
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=41.51 E-value=3.4e+02 Score=28.64 Aligned_cols=18 Identities=22% Similarity=0.163 Sum_probs=10.0
Q ss_pred HhhHhcCChhHHHHHHhc
Q 037236 311 DMYAKCGFLSEAQILFDK 328 (953)
Q Consensus 311 ~~~~~~g~~~~A~~~f~~ 328 (953)
...++.|+.+-++.+++.
T Consensus 217 ~~A~~~~~~~~~~~Ll~~ 234 (437)
T 1n11_A 217 HIAAKQNQVEVARSLLQY 234 (437)
T ss_dssp HHHHHTTCHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHc
Confidence 344455666666666654
No 288
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=41.09 E-value=1.2e+02 Score=28.73 Aligned_cols=50 Identities=12% Similarity=0.098 Sum_probs=21.3
Q ss_pred hcCCCchHHHHHHHHHHHhCCCCCch--HHHHHHHhhHhcCChhHHHHHHhc
Q 037236 279 AGEGNVDLGILVHGLAVKLGLTRELM--VNNALVDMYAKCGFLSEAQILFDK 328 (953)
Q Consensus 279 ~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~f~~ 328 (953)
+..|+.+..+.+++...+.|..++.. ...+.+...+..|+.+-+..+++.
T Consensus 17 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 68 (241)
T 1k1a_A 17 VVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 68 (241)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHc
Confidence 34455555555554444444332211 111223333445555555555543
No 289
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=39.93 E-value=3.1e+02 Score=27.71 Aligned_cols=169 Identities=11% Similarity=-0.043 Sum_probs=101.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHhhhcCCCCHHHHHHHHHHHHhcCChHHHHHH----HHHHHHCCCCCCHHHHHHHHHHHH
Q 037236 610 VACSIIDMYAKCGCLEQSRRVFDRLKDKDVTSWNAIIGGHGIHGYGKEAIEL----FEKMLALGHKPDTFTFVGILMACN 685 (953)
Q Consensus 610 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l----~~~m~~~g~~P~~~t~~~ll~a~~ 685 (953)
.|.++..-|.+.+++++|.+++.. -...+.++|+...|-++ .+-..+.++.++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 345566778888999999888654 23346677886666554 444555678888877777776665
Q ss_pred hcCCHH-HHHHHHHHHHH---hcCC--CCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhHHHHHHHHHHhc---C
Q 037236 686 HAGLVE-NGLKYFSQMQK---LHAV--KPKLEHYACVVDMLGRAGKLDDAFKLIIEMPEEADAGIWSSLLRSCRTY---G 756 (953)
Q Consensus 686 ~~g~~~-~a~~~~~~m~~---~~~~--~p~~~~~~~lv~~l~~~g~~~eA~~~~~~~~~~~~~~~~~~ll~~~~~~---g 756 (953)
.-..-+ +=.++.+.+++ +.|- .-++.....+...|.+.|++.+|+.-|-.. ...|+..+..++.-+... |
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~-~~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLG-THDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTS-CHHHHHHHHHHHHHHHHHTTCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhC-CCccHHHHHHHHHHHHHhcCCC
Confidence 432111 11233333322 1222 234677888899999999999999866521 122455666666655554 5
Q ss_pred ChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 757 ALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 757 ~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
...++...+-++ .--|...|+...|..++....+
T Consensus 183 ~~~e~dlf~~Ra--------------VL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 183 EDSTVAEFFSRL--------------VFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp CHHHHHHHHHHH--------------HHHHHHTTBHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHH--------------HHHHHHhcCHHHHHHHHHHHHH
Confidence 433332222221 1145677888899888776654
No 290
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=37.88 E-value=3.8e+02 Score=28.22 Aligned_cols=17 Identities=24% Similarity=0.401 Sum_probs=8.8
Q ss_pred hhHhcCChhHHHHHHhc
Q 037236 312 MYAKCGFLSEAQILFDK 328 (953)
Q Consensus 312 ~~~~~g~~~~A~~~f~~ 328 (953)
..++.|+.+-+..+++.
T Consensus 119 ~A~~~g~~~~v~~Ll~~ 135 (437)
T 1n11_A 119 IAAREGHVETVLALLEK 135 (437)
T ss_dssp HHHHHTCHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHhC
Confidence 33445555555555554
No 291
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=37.19 E-value=2.2e+02 Score=28.13 Aligned_cols=20 Identities=15% Similarity=-0.069 Sum_probs=9.8
Q ss_pred HHHhhHhcCChhHHHHHHhc
Q 037236 309 LVDMYAKCGFLSEAQILFDK 328 (953)
Q Consensus 309 li~~~~~~g~~~~A~~~f~~ 328 (953)
.+...+..|+.+-+..+++.
T Consensus 65 ~L~~A~~~g~~~~v~~Ll~~ 84 (285)
T 3kea_A 65 PLHQAATLEDTKIVKILLFS 84 (285)
T ss_dssp HHHHHTTSSSCHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHC
Confidence 33344455555555555544
No 292
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=34.26 E-value=98 Score=31.36 Aligned_cols=247 Identities=10% Similarity=-0.015 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHhccCCCCCchhhHHHHHHHhccccchHHHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 037236 338 NTIIGAFSMAGDVCGTFDLLRKMQMKEEEMKPNEVTVLNVLTSCSEKSELLSLKELHGYSLRHGFDNDELVANAFVVAYA 417 (953)
Q Consensus 338 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~li~~y~ 417 (953)
..+|.-|...|+.++|...++++.... ..|.......-+..=.+...-+.+..++..+. .++-+...+...+...+.
T Consensus 7 ~~ii~EYf~~~d~~Ea~~~l~el~~p~--~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~-~~~ls~~~i~~gf~~ll~ 83 (307)
T 2zu6_B 7 TPIIQEYFEHGDTNEVAEMLRDLNLGE--MKSGVPVLAVSLALEGKASHREMTSKLLSDLC-GTVMSTTDVEKSFDKLLK 83 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGG--GGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHH-HHTBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCcc--hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHH
Q ss_pred hcCC----cccHHHHhccCCCC----ChhhHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccc
Q 037236 418 KCGS----EISAENVFHGMDSR----TVSSWNALICGYAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLH 489 (953)
Q Consensus 418 ~~g~----~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 489 (953)
...+ ...|...+..+..+ ++.+.+-+-....+.+.......+-....-...+ .....+-+.+...+...
T Consensus 84 ~ldDl~lD~P~a~~~la~flaraV~d~~l~~~~l~~~~~~~~~~~g~~~l~~a~~~l~~~---~~~~~~~~~WG~~~~~~ 160 (307)
T 2zu6_B 84 DLPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMS---KGGKRKDSVWGSGGGQQ 160 (307)
T ss_dssp HHHHHHHHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGTTTCCCHHHHHHHHHHHHHHHTC---C----CCCSSCCCSTTS
T ss_pred hhhHhcccccchHHHHHHHHHHHHHhCCCCHHHHHHHHhcccchHHHHHHHHHHHHhccc---ccHhHHhhhcCCCCCCC
Q ss_pred hhhHHHHHHHHhCCCCchhhHhhHHHHHHhcCChhHHHHHHHhcccC---CcccHHHHHHHHHhcCCh--hHHHHHHHHH
Q 037236 490 RGKEIHGFVIRNGLEGDSFTGISLLSLYMHCEKSSSARVLFDEMEDK---SLVSWNTMIAGYSQNKLP--VEAIVLFRRM 564 (953)
Q Consensus 490 ~a~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~--~~A~~~~~~m 564 (953)
...++-+.+ +.++.-|...|+.++|.+.++++..| ..+....+..++-+.++. +....++..+
T Consensus 161 ~~eelkkki------------~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L 228 (307)
T 2zu6_B 161 SVNHLVKEI------------DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSL 228 (307)
T ss_dssp CHHHHHHHH------------HHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHH------------HHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHH
Q ss_pred HHcCCCCChhhHHHHHHHhccccc----hHHHHHHHHHHHHc
Q 037236 565 FSIGVQPCEISIVSILSACSQLSA----LRLGKETHCYALKA 602 (953)
Q Consensus 565 ~~~g~~p~~~t~~~ll~a~~~~~~----~~~a~~~~~~~~~~ 602 (953)
...|+-+.......+...+..+.+ ...|..++..+...
T Consensus 229 ~~~~~ls~~q~~~Gf~~vl~~l~Dl~lDiP~A~~~la~~v~~ 270 (307)
T 2zu6_B 229 WKSSTITVDQMKRGYERIYNEIPDINLDVPHSYSVLERFVEE 270 (307)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHhccHhhcccccHHHHHHHHHHH
No 293
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=34.17 E-value=1.5e+02 Score=27.89 Aligned_cols=16 Identities=31% Similarity=0.266 Sum_probs=7.7
Q ss_pred hHhcCChhHHHHHHhc
Q 037236 313 YAKCGFLSEAQILFDK 328 (953)
Q Consensus 313 ~~~~g~~~~A~~~f~~ 328 (953)
.+..|+.+-+..+++.
T Consensus 116 A~~~~~~~~~~~Ll~~ 131 (240)
T 3eu9_A 116 AAQFGHTSIVAYLIAK 131 (240)
T ss_dssp HHHTTCHHHHHHHHHT
T ss_pred HHHcCHHHHHHHHHhc
Confidence 3344555555555443
No 294
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=33.03 E-value=42 Score=29.96 Aligned_cols=64 Identities=14% Similarity=0.204 Sum_probs=44.2
Q ss_pred hHHHHHHHhcCChhhHHHHhhcCCCCC---chhHHHHHHHHhcCCC--hhhHHHHHHHhHhcCCCCCCcc
Q 037236 102 TRLITMYSLCGFPLDSRRVFDSLKTRN---LFQWNALVSGFTKNEL--YPDVLSIFVELLSDTELKPDNF 166 (953)
Q Consensus 102 ~~Li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~g~~p~~~ 166 (953)
+.++.-|...|+.++|.+.++++..|. .+...++..++-+.++ .+.+..++..+.. .++-+...
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~-~~~is~~q 81 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWK-SSTITIDQ 81 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHH-TTCSCHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH-CCCcCHHH
Confidence 467888999999999999999987663 2345566666666433 3456778888776 55544433
No 295
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=30.64 E-value=1.6e+02 Score=27.88 Aligned_cols=40 Identities=15% Similarity=0.123 Sum_probs=18.9
Q ss_pred HHHHHHHhCCCCCch---HHHHHHHhhHhcCChhHHHHHHhcC
Q 037236 290 VHGLAVKLGLTRELM---VNNALVDMYAKCGFLSEAQILFDKN 329 (953)
Q Consensus 290 ~~~~~~~~g~~~~~~---~~~~li~~~~~~g~~~~A~~~f~~~ 329 (953)
+.+.+++.|..++.. ...+.+...++.|+.+-+..+++..
T Consensus 131 ~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 173 (241)
T 1k1a_A 131 TVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHG 173 (241)
T ss_dssp HHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcC
Confidence 344444455443321 1223344445566666666666543
No 296
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=29.82 E-value=2.5e+02 Score=25.97 Aligned_cols=62 Identities=18% Similarity=0.158 Sum_probs=38.5
Q ss_pred HHHHHHHHHhCCCCCChh-------HHHHHHHHHHhcCChhHHHHHHHHHhccCCCCcchHHHHHHHHH
Q 037236 726 LDDAFKLIIEMPEEADAG-------IWSSLLRSCRTYGALKMGEKVAKTLLELEPDKAENYVLVSNIYA 787 (953)
Q Consensus 726 ~~eA~~~~~~~~~~~~~~-------~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 787 (953)
++-|+.+++.+..+-|.. +--..+..|...|.+++|++++++.+.-.|++...-..|.++-.
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~ 162 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIIS 162 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 566777777776543321 12234557999999999999999999988877765555554433
No 297
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.58 E-value=2e+02 Score=24.01 Aligned_cols=36 Identities=25% Similarity=0.419 Sum_probs=24.9
Q ss_pred HHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 037236 760 MGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKE 804 (953)
Q Consensus 760 ~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 804 (953)
.|+..+++.+.+..+-+. ..-..|++|.+++.+|++
T Consensus 47 ~GI~eLe~Gl~I~~~~~~---------~~g~~we~Ar~lq~KM~~ 82 (116)
T 2dl1_A 47 QGIGHLLRGISISSKESE---------HTGPGWESARQMQQKMKE 82 (116)
T ss_dssp HHHHHHHHHHSSCCCCTT---------CCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCC---------CCChhHHHHHHHHHHHHH
Confidence 366677777777654221 123469999999999987
No 298
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=28.59 E-value=2.5e+02 Score=27.64 Aligned_cols=21 Identities=5% Similarity=-0.159 Sum_probs=10.4
Q ss_pred HHhhHhcCChhHHHHHHhcCC
Q 037236 310 VDMYAKCGFLSEAQILFDKNN 330 (953)
Q Consensus 310 i~~~~~~g~~~~A~~~f~~~~ 330 (953)
+...+..|+.+-+.-+++...
T Consensus 133 L~~A~~~~~~~~v~~Ll~~g~ 153 (285)
T 3kea_A 133 FYHAVMLNDVSIVSYFLSEIP 153 (285)
T ss_dssp HHHHHHTTCHHHHHHHHTTSC
T ss_pred HHHHHHcCCHHHHHHHHhCCC
Confidence 333445555555555555443
No 299
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=28.45 E-value=2e+02 Score=27.00 Aligned_cols=15 Identities=7% Similarity=0.047 Sum_probs=7.1
Q ss_pred hccCChHHHHHHhcc
Q 037236 211 GKCAFVEEMVKLFEV 225 (953)
Q Consensus 211 ~~~g~~~~A~~~f~~ 225 (953)
++.|+.+-+..+++.
T Consensus 117 ~~~~~~~~~~~Ll~~ 131 (240)
T 3eu9_A 117 AQFGHTSIVAYLIAK 131 (240)
T ss_dssp HHTTCHHHHHHHHHT
T ss_pred HHcCHHHHHHHHHhc
Confidence 344555544444443
No 300
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=26.89 E-value=3.9e+02 Score=24.91 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=11.2
Q ss_pred HHhhHhcCChhHHHHHHhcCC
Q 037236 310 VDMYAKCGFLSEAQILFDKNN 330 (953)
Q Consensus 310 i~~~~~~g~~~~A~~~f~~~~ 330 (953)
+...+..|+.+-+.-+++...
T Consensus 148 L~~A~~~~~~~~~~~Ll~~g~ 168 (237)
T 3b7b_A 148 LHWAAFSGCVDIAEILLAAKC 168 (237)
T ss_dssp HHHHHHHCCHHHHHHHHTTTC
T ss_pred HHHHHHCCCHHHHHHHHHcCC
Confidence 333445566666666665443
No 301
>1d0d_A TAP, anticoagulant protein; factor XA inhibitor, kunitz inhibitor, blood clotting inhibitor; 1.62A {Ornithodoros moubata} SCOP: g.8.1.2 PDB: 1kig_I 1tap_A 1tcp_A
Probab=26.50 E-value=11 Score=25.69 Aligned_cols=16 Identities=31% Similarity=0.600 Sum_probs=13.9
Q ss_pred ccccccccCCcCCcch
Q 037236 933 HFRDGVCSCGDIGSCW 948 (953)
Q Consensus 933 ~~~~g~csc~~~~~~~ 948 (953)
-|.+|+=||..||-|-
T Consensus 25 ~f~~~k~~c~~fwicp 40 (60)
T 1d0d_A 25 YFRNGKGGCDSFWICP 40 (60)
T ss_dssp EEECSSSSEEEEEECT
T ss_pred eccCCCCCCCcceECC
Confidence 4899999999999884
No 302
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=24.50 E-value=3e+02 Score=23.44 Aligned_cols=62 Identities=13% Similarity=0.157 Sum_probs=40.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHhhhcCCCCH---HHHHHHHHHHHhcCC--hHHHHHHHHHHHHCCCCC
Q 037236 611 ACSIIDMYAKCGCLEQSRRVFDRLKDKDV---TSWNAIIGGHGIHGY--GKEAIELFEKMLALGHKP 672 (953)
Q Consensus 611 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~P 672 (953)
...++.-|...|+.++|.+.++++..|.- ....++..++-+.++ .+....++..+...|+-+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 34577888888999999999999876532 334445555555432 355667777777666444
No 303
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=24.48 E-value=5.6e+02 Score=25.88 Aligned_cols=122 Identities=11% Similarity=0.019 Sum_probs=65.9
Q ss_pred HHhcCChHHHHHHHHHhhhCCCCCCcchHHHHHHhhccccccchhhHHHH-----------HHHHhCCCCchhhHhhHHH
Q 037236 447 YAQNGDHLKALDYFLQMTHSDLEPDLFSIGSLILACTHLKSLHRGKEIHG-----------FVIRNGLEGDSFTGISLLS 515 (953)
Q Consensus 447 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~-----------~~~~~g~~~~~~~~~~li~ 515 (953)
+...|++++|+..|+..+.. ..+.......+.+++.++.. ++.+..+..+...-+.=+.
T Consensus 124 ~~t~gKf~eAl~~Fr~iL~~----------i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~lELA 193 (325)
T 3mv2_A 124 NFKLNKPDIAIECFREAIYR----------ITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRMLELA 193 (325)
T ss_dssp HHHTTCHHHHHHHHHHHHHH----------HHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHH----------hheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 46679999999999987643 11111111122222222222 2222333333334444444
Q ss_pred HHHhcCChhHHHHHHHhcccCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHhccccchHHHHHH
Q 037236 516 LYMHCEKSSSARVLFDEMEDKSLVSWNTMIAGYSQNKLPVEAIVLFRRMFSIGVQPCEISIVSILSACSQLSALRLGKET 595 (953)
Q Consensus 516 ~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~ 595 (953)
+|.-+=+++-.-.+ .+...-+....+.+++..|..+-+++++.+..| ...++|+++
T Consensus 194 AYFT~c~LQp~H~~---------LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~---------------~~a~qArki 249 (325)
T 3mv2_A 194 AYFTKAKLSPIHRT---------NALQVAMSQHFKHKNFLQASYFAGEFLKIISSG---------------PRAEQARKI 249 (325)
T ss_dssp HHGGGSCCCHHHHH---------HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSS---------------HHHHHHHHH
T ss_pred HHhccCCCcHHHHH---------HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCH---------------HHHHHHHHH
Confidence 55444444333322 244555667788899999999999999876433 234556666
Q ss_pred HHHHHHc
Q 037236 596 HCYALKA 602 (953)
Q Consensus 596 ~~~~~~~ 602 (953)
.....+.
T Consensus 250 l~~ce~~ 256 (325)
T 3mv2_A 250 KNKADSM 256 (325)
T ss_dssp HHHHHTS
T ss_pred HHHHhcC
Confidence 6665544
No 304
>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal membrane, metal-binding, metalloprotease; HET: PHE; 1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A* 2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A 2dq6_A 2dqm_A* 2zxg_A*
Probab=24.08 E-value=3.5e+02 Score=32.08 Aligned_cols=145 Identities=9% Similarity=0.003 Sum_probs=81.0
Q ss_pred HHHHHHHHhcCChHHHHH-HHHHHHHCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHhcCCCCChhHHHHHHHH
Q 037236 643 NAIIGGHGIHGYGKEAIE-LFEKMLALGHKPDTFTFVGILMACNHA--GLVENGLKYFSQMQKLHAVKPKLEHYACVVDM 719 (953)
Q Consensus 643 ~~li~~~~~~g~~~~A~~-l~~~m~~~g~~P~~~t~~~ll~a~~~~--g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~ 719 (953)
|..+..++..+ ..++.+ ..++... ..|..--.+-+.++.+. +.-++++.-|..- ..-.| -...-...+
T Consensus 703 n~~l~~l~~~~-~~~~~~~~~~~~~~---a~nmtd~~~al~~~~~~~~~~~~~~l~~f~~~---~~~~~--lv~~kwf~~ 773 (891)
T 3b34_A 703 NACLRFLAFGE-THLADVLVSKQFHE---ANNMTDALAALSAAVAAQLPCRDALMQEYDDK---WHQNG--LVMDKWFIL 773 (891)
T ss_dssp HHHHHHHHTSC-HHHHHHHHHHHHHH---CSSHHHHHHHHHHHHHTTCTTHHHHHHHHHHH---HTTCH--HHHHHHHHH
T ss_pred HHHHHHHHhCC-CchHHHHHHHHHhh---CCChHHHHHHHHHHhccCcchHHHHHHHHHHH---hccCc--HHHHHHHHH
Confidence 44444444443 333333 3334444 23444444445555543 3555666555533 33333 223322222
Q ss_pred HhhcCCHHHHHHHHHhCCCC-----CChhHHHHHHHHHHhcC------ChhHH-HHHHHHHhccCCCCcchHHHHHHHHH
Q 037236 720 LGRAGKLDDAFKLIIEMPEE-----ADAGIWSSLLRSCRTYG------ALKMG-EKVAKTLLELEPDKAENYVLVSNIYA 787 (953)
Q Consensus 720 l~~~g~~~eA~~~~~~~~~~-----~~~~~~~~ll~~~~~~g------~~~~a-~~~~~~~~~l~p~~~~~~~~l~~~y~ 787 (953)
-+.... .++++.++++... .++.-..+|++++...+ .-..| .-+.+.++++++-||..-..|...+.
T Consensus 774 qa~~~~-~~~~~~v~~l~~h~~f~~~npn~~r~l~~~f~~~n~~~fh~~~g~gy~~~~~~~~~l~~~np~~a~r~~~~~~ 852 (891)
T 3b34_A 774 QATSPA-ANVLETVRGLLQHRSFTMSNPNRIRSLIGAFAGSNPAAFHAEDGSGYLFLVEMLTDLNSRNPQVASRLIEPLI 852 (891)
T ss_dssp HHTCCC-TTHHHHHHHHTTCTTCCTTCHHHHHHHHHHHHHHCHHHHTCTTSHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HhCCCC-ccHHHHHHHHhcCCCCCCCCCcHHHHHHHHHhccCccccCCCCCcHHHHHHHHHHHhcCcCHHHHHHHHHHHh
Confidence 233322 3345555444432 46788899999875522 11223 44778889999999999999999999
Q ss_pred hcCCchHHHH
Q 037236 788 GSEKWDDVRM 797 (953)
Q Consensus 788 ~~g~~~~a~~ 797 (953)
.-.++++..+
T Consensus 853 ~~~~~~~~~~ 862 (891)
T 3b34_A 853 RLKRYDAKRQ 862 (891)
T ss_dssp TGGGSCHHHH
T ss_pred hhhhcCHHHH
Confidence 9999998877
No 305
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=23.52 E-value=1.9e+02 Score=27.87 Aligned_cols=86 Identities=9% Similarity=0.043 Sum_probs=43.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC--CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCChhHHHHHHHH
Q 037236 646 IGGHGIHGYGKEAIELFEKMLAL--GHKP----DTFTFVGILMACNHAGLVENGLKYFSQMQKLHAVKPKLEHYACVVDM 719 (953)
Q Consensus 646 i~~~~~~g~~~~A~~l~~~m~~~--g~~P----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~ 719 (953)
+..+..+.++++|++++++..+. +.++ +.......+..-.....-.-+..+.+.+ . -.+++......+..
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~---~~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-L---SSNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-H---TCSSHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-H---hcCCHHHHHHHHHH
Confidence 45566677777777777765442 2222 1111222222222211112222333333 2 14445556667788
Q ss_pred HhhcCCHHHHHHHHHh
Q 037236 720 LGRAGKLDDAFKLIIE 735 (953)
Q Consensus 720 l~~~g~~~eA~~~~~~ 735 (953)
+.|.|+-++|.++|-+
T Consensus 101 L~rLg~~~~A~~lfL~ 116 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQ 116 (235)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHH
Confidence 8888999998887743
No 306
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=23.18 E-value=3.8e+02 Score=24.14 Aligned_cols=19 Identities=0% Similarity=-0.139 Sum_probs=11.4
Q ss_pred HHHhcCChhhHHHHhhcCC
Q 037236 107 MYSLCGFPLDSRRVFDSLK 125 (953)
Q Consensus 107 ~y~~~g~~~~A~~~f~~~~ 125 (953)
..+..|+.+....++..-.
T Consensus 11 ~A~~~g~~~~v~~ll~~~~ 29 (201)
T 3hra_A 11 EAANQRDTKKVKEILQDTT 29 (201)
T ss_dssp HHHHTTCHHHHHHHHTCTT
T ss_pred HHHHhccHHHHHHHHHcCC
Confidence 3355677777777766543
No 307
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.35 E-value=3.4e+02 Score=29.66 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=13.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 037236 677 FVGILMACNHAGLVENGLKYFSQM 700 (953)
Q Consensus 677 ~~~ll~a~~~~g~~~~a~~~~~~m 700 (953)
++.++..|.+.+.++.|..+....
T Consensus 234 ~nllLRnYL~~~~y~qA~~lvsk~ 257 (523)
T 4b4t_S 234 INLILRDFLNNGEVDSASDFISKL 257 (523)
T ss_dssp HHHHHHHHHHSSCSTTHHHHHHHH
T ss_pred HHHHHHHHHccCcHHHHHHHHhcC
Confidence 445555555555555555555544
No 308
>3syn_E ATP-binding protein YLXH; SRP GTPase, flagellum, protein transport, biosynthetic prote GTPase activating protein, type 3 secretion system; HET: GDP; 3.06A {Bacillus subtilis}
Probab=22.28 E-value=47 Score=17.70 Aligned_cols=17 Identities=24% Similarity=0.632 Sum_probs=14.0
Q ss_pred cCCchHHHHHHHHHHHC
Q 037236 789 SEKWDDVRMMRQRMKER 805 (953)
Q Consensus 789 ~g~~~~a~~~~~~m~~~ 805 (953)
.++++.|..++.+|+++
T Consensus 3 mnrydqaatlrakmekr 19 (23)
T 3syn_E 3 MNRYDQAATLRAKMEKR 19 (26)
T ss_pred cchHHHHHHHHHHHHHH
Confidence 46789999999999764
No 309
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=22.01 E-value=1.6e+02 Score=28.32 Aligned_cols=22 Identities=9% Similarity=-0.058 Sum_probs=13.4
Q ss_pred HHHHHcCCChhHHHHHHHHHHh
Q 037236 341 IGAFSMAGDVCGTFDLLRKMQM 362 (953)
Q Consensus 341 i~~~~~~g~~~~A~~l~~~m~~ 362 (953)
++.+....++++|++++++...
T Consensus 25 LDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 4555666666676666665543
No 310
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=21.87 E-value=4.2e+02 Score=23.43 Aligned_cols=48 Identities=8% Similarity=0.005 Sum_probs=35.2
Q ss_pred HHHHHHHHhcc--CCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCc
Q 037236 761 GEKVAKTLLEL--EPDKAENYVLVSNIYAGSEKWDDVRMMRQRMKERGLQ 808 (953)
Q Consensus 761 a~~~~~~~~~l--~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 808 (953)
...+++.+... .-.-+..|...+..+-..|++.+|..+++.-.+++-.
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 133 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAE 133 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 56666666653 4556777888888889999999999888776665443
No 311
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=21.57 E-value=1.1e+02 Score=17.04 Aligned_cols=17 Identities=24% Similarity=0.304 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHh
Q 037236 835 WEEIRGMWGRLEEQISK 851 (953)
Q Consensus 835 ~~~i~~~l~~l~~~~~~ 851 (953)
+.++|..|+.|.+++++
T Consensus 3 adelykeledlqerlrk 19 (27)
T 3twe_A 3 ADELYKELEDLQERLRK 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56788888888777664
No 312
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=21.51 E-value=3.3e+02 Score=24.63 Aligned_cols=18 Identities=0% Similarity=-0.031 Sum_probs=10.9
Q ss_pred hhccCChHHHHHHhccCC
Q 037236 210 YGKCAFVEEMVKLFEVMP 227 (953)
Q Consensus 210 ~~~~g~~~~A~~~f~~m~ 227 (953)
.+..|+.+....++..-.
T Consensus 12 A~~~g~~~~v~~ll~~~~ 29 (201)
T 3hra_A 12 AANQRDTKKVKEILQDTT 29 (201)
T ss_dssp HHHTTCHHHHHHHHTCTT
T ss_pred HHHhccHHHHHHHHHcCC
Confidence 345567777766665543
No 313
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=21.45 E-value=1.2e+02 Score=33.35 Aligned_cols=42 Identities=10% Similarity=0.085 Sum_probs=23.2
Q ss_pred hcCChhHHHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHH
Q 037236 754 TYGALKMGEKVAKTLLELEPDKAENYVLVSNIYAGSEKWDDV 795 (953)
Q Consensus 754 ~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a 795 (953)
-....+.|...|.++..+.|++..+|..|+-++...|+.-+|
T Consensus 164 Y~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a 205 (497)
T 1ya0_A 164 YRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTT 205 (497)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHH
Confidence 333445555555666666666666666666555555554443
No 314
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=21.16 E-value=28 Score=25.71 Aligned_cols=23 Identities=22% Similarity=0.502 Sum_probs=18.8
Q ss_pred ceEEEecCCcccccccccccCCc
Q 037236 921 REIVIRDNKRFHHFRDGVCSCGD 943 (953)
Q Consensus 921 ~~~~~~~~~~~h~~~~g~csc~~ 943 (953)
..|=+.|....|+|+||+-+-.|
T Consensus 8 k~v~LkDGstvyiFKDGKMamEd 30 (74)
T 2k0q_A 8 KTYDLQDGSKVHVFKDGKMGMEN 30 (74)
T ss_dssp EEEEBTTSCEEEEETTSCEEEEC
T ss_pred eeEecCCCcEEEEEcCCceehhh
Confidence 35778999999999999976544
No 315
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=20.48 E-value=24 Score=23.09 Aligned_cols=12 Identities=25% Similarity=0.794 Sum_probs=9.7
Q ss_pred ccccCCcchhhH
Q 037236 901 NLRICVDCHNAA 912 (953)
Q Consensus 901 nlr~c~~ch~~~ 912 (953)
+-|+|.+||.-+
T Consensus 16 ~YRvC~~CgkPi 27 (44)
T 2lo3_A 16 QYRVCEKCGKPL 27 (44)
T ss_dssp CEEECTTTCCEE
T ss_pred cchhhcccCCcc
Confidence 789999998543
No 316
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=20.15 E-value=1.9e+02 Score=23.39 Aligned_cols=31 Identities=26% Similarity=0.459 Sum_probs=28.1
Q ss_pred EEeCCEEEEEeeCCCCCccHHHHHHHHHHHH
Q 037236 816 IELGGNIHSFVVGDNMHPEWEEIRGMWGRLE 846 (953)
Q Consensus 816 i~~~~~~~~f~~~d~~hp~~~~i~~~l~~l~ 846 (953)
|..+|.++.|..+|...|.++++..++....
T Consensus 19 V~f~ge~~rF~Vs~~~~~tweel~~mvk~~f 49 (101)
T 1wj6_A 19 VTFKNEIQSFLVSDPENTTWADIEAMVKVSF 49 (101)
T ss_dssp EEETTEEEEEEESCTTTSCHHHHHHHHHHHH
T ss_pred EEEcCCeeEEEecCCCCCCHHHHHHHHHHHc
Confidence 6889999999999999999999999887765
Done!