BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037237
         (1267 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2UXH|A Chain A, Ttgr In Complex With Quercetin
 pdb|2UXH|B Chain B, Ttgr In Complex With Quercetin
 pdb|2UXI|A Chain A, Phloretin In Complex With Ttgr
 pdb|2UXI|B Chain B, Phloretin In Complex With Ttgr
 pdb|2UXO|A Chain A, Ttgr In Complex With Tetracycline
 pdb|2UXO|B Chain B, Ttgr In Complex With Tetracycline
 pdb|2UXP|A Chain A, Ttgr In Complex Chloramphenicol
 pdb|2UXP|B Chain B, Ttgr In Complex Chloramphenicol
 pdb|2UXU|A Chain A, Ttgr In Complex With Naringenin
 pdb|2UXU|B Chain B, Ttgr In Complex With Naringenin
          Length = 210

 Score = 32.7 bits (73), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 24/32 (75%)

Query: 1038 NDSSELLQAILESLHESFDTVNCDFQSQDEYE 1069
            N+ +EL+QA+L+SLHE+ D +    +S+DE +
Sbjct: 53   NNKAELVQALLDSLHETHDHLARASESEDEVD 84


>pdb|2R7E|B Chain B, Crystal Structure Analysis Of Coagulation Factor Viii
          Length = 770

 Score = 30.4 bits (67), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 24/114 (21%), Positives = 50/114 (43%), Gaps = 7/114 (6%)

Query: 209 RSQKNRKLTAMKADGEEVEDDVIKKDLMGVEMRKKQVEEIIKDLEQQKTYYSTEKYEQNV 268
           R Q+    T +++D EE++ D    D + VEM+K+  +   +D  Q    +  +     +
Sbjct: 83  RHQREITRTTLQSDQEEIDYD----DTISVEMKKEDFDIYDEDENQSPRSFQKKTRHYFI 138

Query: 269 EKVEKYVSFWSSGLNSDKKRGFLKVNKEELKKYVKSLKNDFVEKIFSEALSFAE 322
             VE+    W  G++S       +     + ++ K +  +F +  F++ L   E
Sbjct: 139 AAVER---LWDYGMSSSPHVLRNRAQSGSVPQFKKVVFQEFTDGSFTQPLYRGE 189


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.133    0.396 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,703,079
Number of Sequences: 62578
Number of extensions: 1434774
Number of successful extensions: 3420
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 3405
Number of HSP's gapped (non-prelim): 32
length of query: 1267
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1157
effective length of database: 8,089,757
effective search space: 9359848849
effective search space used: 9359848849
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)