BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037237
(1267 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q70EL1|UBP54_HUMAN Inactive ubiquitin carboxyl-terminal hydrolase 54 OS=Homo sapiens
GN=USP54 PE=1 SV=4
Length = 1684
Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 85/331 (25%), Positives = 134/331 (40%), Gaps = 59/331 (17%)
Query: 948 ENGTTDSFVNMIVKSLWHLREFREEFMRRRQTIHNHIGDPCIVCALYDMFAALSTACEDN 1007
E G F+N ++ LWHL FR F R+ T H +GD CI CAL +F C
Sbjct: 36 EPGQNSCFLNSALQVLWHLDIFRRSF--RQLTTHKCMGDSCIFCALKGIFNQFQ--CSSE 91
Query: 1008 QVEVPSAPSSLRVALTTYSYDKNICKQAKMNDSSELLQAILESLHESFDTVNCDFQSQDE 1067
+V +PS +LR AL D+ + M+D++E + +L +H F DE
Sbjct: 92 KV-LPS--DTLRSALAKTFQDEQRFQLGIMDDAAECFENLLMRIH---------FHIADE 139
Query: 1068 YEGSLDCSSAGCFVHIIFGMDHYEKVNCVKCSAKFGYRKYTSLFLTLNAYNLRNM----- 1122
+ + C++ C H F M +E+ C C A + + ++ +L N
Sbjct: 140 TKEDI-CTAQHCISHQKFAMTLFEQCVCTSCGATSDPLPFIQMVHYISTTSLCNQAICML 198
Query: 1123 --KKTPRGSSFDVLLKQLVLNG-LLNCGA-CGQINYIHHTLWRLPHVFTIGMLRVCNTIE 1178
++ P S F LL+ G L NC + CG+ I L P + TIG++
Sbjct: 199 ERREKPSPSMFGELLQNASTMGDLRNCPSNCGERIRIRRVLMNAPQIITIGLV------- 251
Query: 1179 IEVIFGYSWLEFAVIGWQRD-CESSEDVLSTLSALSAELDISNLFEGYPPDNI----YFL 1233
W D + +EDV+ +L L + +LF D +L
Sbjct: 252 ----------------WDSDHSDLAEDVIHSLGTC---LKLGDLFFRVTDDRAKQSELYL 292
Query: 1234 ASMVCVSSDRQRYIIFVYNHMLEKYVQSDGA 1264
M+C + Y F + + K++ D A
Sbjct: 293 VGMICYYG--KHYSTFFFQTKIRKWMYFDDA 321
>sp|Q8BL06|UBP54_MOUSE Inactive ubiquitin carboxyl-terminal hydrolase 54 OS=Mus musculus
GN=Usp54 PE=1 SV=2
Length = 1588
Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 102/233 (43%), Gaps = 26/233 (11%)
Query: 948 ENGTTDSFVNMIVKSLWHLREFREEFMRRRQTIHNHIGDPCIVCALYDMFAALSTACEDN 1007
E G F+N ++ LWHL FR F R+ T H +GD CI CAL +F C
Sbjct: 36 EPGQNSCFLNSALQVLWHLDIFRRSF--RQLTTHKCMGDSCIFCALKGIFNQFQ--CSSE 91
Query: 1008 QVEVPSAPSSLRVALTTYSYDKNICKQAKMNDSSELLQAILESLHESFDTVNCDFQSQDE 1067
+V +PS +LR AL D+ + M+D++E + +L +H F DE
Sbjct: 92 KV-LPS--DTLRSALAKTFQDEQRFQLGIMDDAAECFENLLMRIH---------FHIADE 139
Query: 1068 YEGSLDCSSAGCFVHIIFGMDHYEKVNCVKCSAKFGYRKYTSLFLTLNAYNLRNM----- 1122
+ + C++ C H F M +E+ C C A + + ++ L N
Sbjct: 140 TKEDI-CTAQHCISHQKFAMTLFEQCVCSSCGATSDPLPFIQMVHYISTTALCNQAICML 198
Query: 1123 --KKTPRGSSFDVLLKQLVLNG-LLNCGA-CGQINYIHHTLWRLPHVFTIGML 1171
++ P S F LL+ G L NC + CG+ I L P + TIG++
Sbjct: 199 EKREKPSPSMFGELLQNASTMGDLRNCPSNCGERIRIRRVLMNAPQIITIGLV 251
>sp|Q6IE24|UBP54_RAT Inactive ubiquitin carboxyl-terminal hydrolase 54 OS=Rattus
norvegicus GN=Usp54 PE=2 SV=2
Length = 1588
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 83/331 (25%), Positives = 133/331 (40%), Gaps = 59/331 (17%)
Query: 948 ENGTTDSFVNMIVKSLWHLREFREEFMRRRQTIHNHIGDPCIVCALYDMFAALSTACEDN 1007
E G F+N ++ LWHL FR F R+ T H +GD CI CAL +F C
Sbjct: 36 EPGQNSCFLNSALQVLWHLDIFRRSF--RQLTSHKCMGDSCIFCALKGIFKQFQ--CSSE 91
Query: 1008 QVEVPSAPSSLRVALTTYSYDKNICKQAKMNDSSELLQAILESLHESFDTVNCDFQSQDE 1067
+V +PS +LR AL D+ + M+D++E + +L +H F DE
Sbjct: 92 KV-LPS--DTLRSALAKTFQDEQRFQLGIMDDAAECFENLLMRIH---------FHIADE 139
Query: 1068 YEGSLDCSSAGCFVHIIFGMDHYEKVNCVKCSAKFGYRKYTSLFLTLNAYNLRNM----- 1122
+ + C++ C H F M +E+ C C A + + ++ +L N
Sbjct: 140 TKEDI-CTAPHCISHQKFAMTLFEQCVCTSCGATSDPLPFIQMVHYISTTSLCNQAICML 198
Query: 1123 --KKTPRGSSFDVLLKQLVLNG-LLNCGA-CGQINYIHHTLWRLPHVFTIGMLRVCNTIE 1178
++ P F LL+ G L +C + CG+ I L P + TIG++
Sbjct: 199 EKREKPSPGMFGELLQNASTMGDLRDCPSNCGERIRIRRVLMNAPQIITIGLV------- 251
Query: 1179 IEVIFGYSWLEFAVIGWQRD-CESSEDVLSTLSALSAELDISNLFEGYPPDNI----YFL 1233
W D + +EDV+ +L L + +LF D +L
Sbjct: 252 ----------------WDSDHSDLAEDVIHSLGTC---LKLGDLFFRVTDDRAKQSELYL 292
Query: 1234 ASMVCVSSDRQRYIIFVYNHMLEKYVQSDGA 1264
M+C + Y F + + K++ D A
Sbjct: 293 VGMICYYG--KHYSTFFFQTKIRKWMYFDDA 321
>sp|P15975|UBP53_MOUSE Inactive ubiquitin carboxyl-terminal hydrolase 53 OS=Mus musculus
GN=Usp53 PE=2 SV=2
Length = 1069
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 85/330 (25%), Positives = 127/330 (38%), Gaps = 57/330 (17%)
Query: 948 ENGTTDSFVNMIVKSLWHLREFREEFMRRRQTIHNHIGDPCIVCALYDMFAALSTACEDN 1007
E G F+N V+ LW L FR R T H GD CI CAL +FA + E
Sbjct: 35 EPGQNSCFLNSAVQVLWQLDIFRRSL--RALTGHICQGDACIFCALKTIFAQFQHSREK- 91
Query: 1008 QVEVPSAPSSLRVALTTYSYDKNICKQAKMNDSSELLQAILESLHESFDTVNCDFQSQDE 1067
+PS ++R AL D+ + M+D++E + IL +H F
Sbjct: 92 --ALPS--DNIRHALAESFKDEQRFQLGLMDDAAECFENILARIH---------FHLVPN 138
Query: 1068 YEGSLDCSSAGCFVHIIFGMDHYEKVNCVKCSAKFGYRKYTSLFLTLNAYNL-----RNM 1122
+ + C+S C H F M YE+ C C A +T L ++ L R M
Sbjct: 139 RDADM-CTSKSCVTHQKFAMTLYEQCVCRSCGASSDPLPFTELVRYISTTALCNEVERMM 197
Query: 1123 KKTPR--GSSFDVLLKQL-VLNGLLNCGA-CGQINYIHHTLWRLPHVFTIGMLRVCNTIE 1178
++ R F LL+ + C + CGQ I L P + TIG++
Sbjct: 198 ERHERVKPEMFAELLQAANTADDYRKCPSNCGQKIKIRRVLMNCPEIVTIGLV------- 250
Query: 1179 IEVIFGYSWLEFAVIGWQRDCESSEDVLSTLSALSAELDISNLF----EGYPPDNIYFLA 1234
W D E S+ + +L+ L + LF + D+ L
Sbjct: 251 --------W----------DSEHSDLTEDVVRSLATHLYLPGLFYRVTDENATDSELHLV 292
Query: 1235 SMVCVSSDRQRYIIFVYNHMLEKYVQSDGA 1264
M+C +S + Y F ++ K+V D A
Sbjct: 293 GMICYTS--RHYCAFAFHTKSSKWVFFDDA 320
>sp|Q70EK8|UBP53_HUMAN Inactive ubiquitin carboxyl-terminal hydrolase 53 OS=Homo sapiens
GN=USP53 PE=2 SV=2
Length = 1073
Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 83/330 (25%), Positives = 124/330 (37%), Gaps = 57/330 (17%)
Query: 948 ENGTTDSFVNMIVKSLWHLREFREEFMRRRQTIHNHIGDPCIVCALYDMFAALSTACEDN 1007
E G F+N V+ LW L FR R T H GD CI CAL +FA + E
Sbjct: 35 EPGQNSCFLNSAVQVLWQLDIFRRSL--RVLTGHVCQGDACIFCALKTIFAQFQHSREK- 91
Query: 1008 QVEVPSAPSSLRVALTTYSYDKNICKQAKMNDSSELLQAILESLHESFDTVNCDFQSQDE 1067
+PS ++R AL D+ + M+D++E + +LE +H F
Sbjct: 92 --ALPS--DNIRHALAESFKDEQRFQLGLMDDAAECFENMLERIH---------FHIVPS 138
Query: 1068 YEGSLDCSSAGCFVHIIFGMDHYEKVNCVKCSAKFGYRKYTSLFLTLNAYNLRN--MKKT 1125
+ + C+S C H F M YE+ C C A +T ++ L N +
Sbjct: 139 RDADM-CTSKSCITHQKFAMTLYEQCVCRSCGASSDPLPFTEFVRYISTTALCNEVERML 197
Query: 1126 PRGSSF------DVLLKQLVLNGLLNCGA-CGQINYIHHTLWRLPHVFTIGMLRVCNTIE 1178
R F ++L + C + CGQ I L P + TIG++
Sbjct: 198 ERHERFKPEMFAELLQAANTTDDYRKCPSNCGQKIKIRRVLMNCPEIVTIGLV------- 250
Query: 1179 IEVIFGYSWLEFAVIGWQRDCESSEDVLSTLSALSAELDISNLFEGYPPDNI----YFLA 1234
W D E S+ + + L+ L + LF +N L
Sbjct: 251 --------W----------DSEHSDLTEAVVRNLATHLYLPGLFYRVTDENAKNSELNLV 292
Query: 1235 SMVCVSSDRQRYIIFVYNHMLEKYVQSDGA 1264
M+C +S Q Y F ++ K+V D A
Sbjct: 293 GMICYTS--QHYCAFAFHTKSSKWVFFDDA 320
>sp|Q9FPS4|UBP23_ARATH Ubiquitin carboxyl-terminal hydrolase 23 OS=Arabidopsis thaliana
GN=UBP23 PE=2 SV=2
Length = 859
Score = 37.4 bits (85), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 94/262 (35%), Gaps = 61/262 (23%)
Query: 838 ARKHGAGFTNEAADVPVLSDNPNSKVGENADEMSATEEKQLEAHPEYQSQFEPGATLGVN 897
ARK GF+N +D + + NP S N +SA K+ ++ + FEP T
Sbjct: 45 ARKPFNGFSNGRSDFKIETLNPCS---SNQRLLSAPSAKKPDSSDLLEHGFEPDLT---- 97
Query: 898 EFGFGFTNEAAVVCSSVLSDNPISRDGENADELKELEREIEAYLEYWRQFENGTTDSFVN 957
F F R+I A L+ N F+N
Sbjct: 98 -FSITF-------------------------------RKIGAGLQ------NLGNTCFLN 119
Query: 958 MIVKSLWHLREFREEFMRRRQTIHNHIGDPCIVCALYDMFAALSTACEDNQVEVPSAPSS 1017
+++ L + + H+ C +CA+ + TA + N + AP
Sbjct: 120 SVLQCLTYTEPLAATLQTAAHQKYCHVAGFCALCAIQKH---VRTARQANGRIL--APKD 174
Query: 1018 LRVALTTYSYDKNICKQAKMNDSSELLQAILESLHESFDTVNCDFQSQDEYEGSLDCSSA 1077
L L S + C+Q D+ E + +LE +H+ +S D Y SL
Sbjct: 175 LVSNLRCISRNFRNCRQ---EDAHEYMINLLECMHKCSLPSGVPSESSDAYRRSL----- 226
Query: 1078 GCFVHIIFGMDHYEKVNCVKCS 1099
VH IFG +V C +CS
Sbjct: 227 ---VHKIFGGSLRSQVKCEQCS 245
>sp|A3Q9C4|CAPP_SHELP Phosphoenolpyruvate carboxylase OS=Shewanella loihica (strain ATCC
BAA-1088 / PV-4) GN=ppc PE=3 SV=1
Length = 878
Score = 37.4 bits (85), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Query: 70 EMIKESISSHQDSPHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLVELSF 129
+++ ++I +H D P L +E H LA+ + +G DT E + T +A P+ + F
Sbjct: 17 QILGDTIRTHMDEPFLDKIEQIRH--LAKSSRQGNDTAREQMLTLLAA---LPDEELVPF 71
Query: 130 LHA-ALLYKLAEINDKEWDVVIEACERMLKIGDPYDTLLGSNL 171
A LA I + ++ + C+ ++ + DP D LLG L
Sbjct: 72 AKAFNQFLNLANIAE-QFHTISRNCDELVCVPDPVDQLLGRML 113
>sp|B0K5G9|RPOC_THEPX DNA-directed RNA polymerase subunit beta' OS=Thermoanaerobacter sp.
(strain X514) GN=rpoC PE=3 SV=2
Length = 1184
Score = 37.0 bits (84), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
Query: 135 LYKL--AEINDKEWDVVIEACERMLKIGDPYDT-LLGSNLVDMF 175
+Y+L EINDK +V+I R +K+ DP DT +L L+DMF
Sbjct: 1029 VYRLQGVEINDKHIEVIIRQMMRKVKVEDPGDTSMLPGELIDMF 1072
>sp|Q09738|UBP8_SCHPO Probable ubiquitin carboxyl-terminal hydrolase 8
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=ubp8 PE=3 SV=1
Length = 449
Score = 37.0 bits (84), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 71/170 (41%), Gaps = 28/170 (16%)
Query: 937 IEAYLEY--------WRQFENGTTDSFVNMIVKSLWHLREFREEFMRRRQTIHNHIGDPC 988
+EAY +Y R +N F+++I++S+ H R F T + C
Sbjct: 129 LEAYRKYPPVCATAGLRGIQNLGATCFMSVILQSILHNPLVRNLFFSGFHTSTDCKRPTC 188
Query: 989 IVCALYDMFAALSTACEDNQVEVPSAPSSLRVALTTYSYDKNICKQAKMNDSSELLQAIL 1048
+ CA+ DMF+++ + + P+A +L L+ K++C ++ D E +L
Sbjct: 189 MTCAIDDMFSSIYNSKNKSTFYGPTAVLNLMWKLS-----KSLCGYSQ-QDGHEFFVYLL 242
Query: 1049 ESLHESFDTVNCDFQSQDEYEGSLDCSSAGCFVHIIFGMDHYEKVNCVKC 1098
+ +H ++ S+ C+ C +H IF V C+ C
Sbjct: 243 DQMH-----------TESGGGTSMPCT---CPIHRIFSGSLKNVVTCLDC 278
>sp|B0KCJ3|RPOC_THEP3 DNA-directed RNA polymerase subunit beta' OS=Thermoanaerobacter
pseudethanolicus (strain ATCC 33223 / 39E) GN=rpoC PE=3
SV=1
Length = 1184
Score = 37.0 bits (84), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
Query: 135 LYKL--AEINDKEWDVVIEACERMLKIGDPYDT-LLGSNLVDMF 175
+Y+L EINDK +V+I R +K+ DP DT +L L+DMF
Sbjct: 1029 VYRLQGVEINDKHIEVIIRQMMRKVKVEDPGDTSMLPGELIDMF 1072
>sp|B0TT20|SYT_SHEHH Threonine--tRNA ligase OS=Shewanella halifaxensis (strain HAW-EB4)
GN=thrS PE=3 SV=1
Length = 642
Score = 35.8 bits (81), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 9/85 (10%)
Query: 557 LLLDERLLVGE-FTNANYFDVDADDDSAVTCCHDMCKDDVHRDGNKIVSWLYSNPVVGKH 615
L + ++ +G N Y+D+D D H + ++D+ ++ + +N V K
Sbjct: 86 LFPETKMAIGPVIDNGFYYDIDLD--------HKLTQEDIDALEKRMAALAKTNYAVDKR 137
Query: 616 LMSWTRLRDSKRGRGKEVLRIILEE 640
++SW RD+ RG++ IL+E
Sbjct: 138 VVSWQEARDTFEARGEDYKMAILDE 162
>sp|Q082E1|SYT_SHEFN Threonine--tRNA ligase OS=Shewanella frigidimarina (strain NCIMB
400) GN=thrS PE=3 SV=1
Length = 642
Score = 35.4 bits (80), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 570 NANYFDVDADDDSAVTCCHDMCKDDVHRDGNKIVSWLYSNPVVGKHLMSWTRLRDSKRGR 629
N Y+D+D D H + +D+ ++++ +N V K ++SW RD+ GR
Sbjct: 100 NGFYYDIDLD--------HKLTHEDIEALEKRMLALAKTNYDVVKKVVSWQEARDAFDGR 151
Query: 630 GKEVLRIILEE 640
G+E IL+E
Sbjct: 152 GEEYKIAILDE 162
>sp|Q5VXU9|CI084_HUMAN Uncharacterized protein C9orf84 OS=Homo sapiens GN=C9orf84 PE=2
SV=1
Length = 1444
Score = 35.4 bits (80), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 52/102 (50%), Gaps = 2/102 (1%)
Query: 126 ELSFLHAALLYKLAEINDKEWDVVIE-ACERMLKIGDPYDTLLGSNLVDMFTG-SLLEKE 183
E++F HAALL+ L I D ++ A + K D Y+++LG L D++ +++
Sbjct: 653 EMTFKHAALLHLLVTIRDVLLTCSLDTALGYLSKAKDIYNSILGPYLGDIWRQLEIVQFI 712
Query: 184 KVGMSNRESKIESMKQQIMKCLQDSRSQKNRKLTAMKADGEE 225
+ KI+ ++ QI+ +Q + K + M +DGE+
Sbjct: 713 RGKKPETNYKIQELQCQILSWMQSQQQIKVLIIIRMDSDGEK 754
>sp|Q6GNV6|COM1_XENLA DNA endonuclease RBBP8 OS=Xenopus laevis GN=rbbp8 PE=1 SV=1
Length = 856
Score = 34.7 bits (78), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 94/217 (43%), Gaps = 41/217 (18%)
Query: 139 AEINDKEWDVVIEACERMLKIGDPYDTLLGSNLVDMFTGSLLEKEKVGMSNRESKIESMK 198
E+ D ++ V E+C LK+GDP D+ S D F G + +K + G K +S
Sbjct: 639 PELEDMDYTYVNESCLLKLKMGDPDDSEAESKDQDSF-GEMFDKTEYGEYASYIKDKSPS 697
Query: 199 QQIM-KCLQDSRSQKNRKLTAMK---ADGE--EVEDDVIKKDLMGVEMRKKQVE----EI 248
Q I K D S +N+K+T+ K + GE + + ++ E +K ++ E+
Sbjct: 698 QSISCKERSDIPSIENKKITSEKEHESKGEPYQKQKAFVEPYFQRPERKKPAIDFPHIEV 757
Query: 249 IKDLEQQKT-----------YYSTEKYEQNVEKVE-------KYV------SFWSSGLNS 284
+++ E+++ YY+ E+ +K+ +Y+ +FW G S
Sbjct: 758 VRNKEERRKMLGHTCKECELYYADLPEEERAKKLASCSRHRFRYIPPSTPENFWEVGFPS 817
Query: 285 D---KKRGFLKVNKEELKKYVKSLKNDFVEKIFSEAL 318
K RG++ KEEL + + IF+ +
Sbjct: 818 TQTCKDRGYI---KEELSPCQRPRRRQPYNAIFTSKI 851
>sp|C6A048|MTAD_THESM 5-methylthioadenosine/S-adenosylhomocysteine deaminase
OS=Thermococcus sibiricus (strain MM 739 / DSM 12597)
GN=mtaD PE=3 SV=1
Length = 424
Score = 34.3 bits (77), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 92/215 (42%), Gaps = 30/215 (13%)
Query: 258 YYSTEKYEQNVEKV--EKYVSFWSSGLNSDKKRGFLKVNKEELKKYVKSLKNDFVEKIFS 315
Y+ E+ + VE++ Y+S+ L ++KR +L K+++SL + VE +F
Sbjct: 120 YFHMEEVAKAVEEIGLRAYLSYGMVDLGDEEKRSIEIRETLKLLKFIESLSSPRVEFLFG 179
Query: 316 ---------EALSFAEEH--KTWKFSECFVCVEKIGNPQLCEKHFRSSHWNHLEIMVQPL 364
+ L++ E +T K + K Q+ EK+ ++ V+ L
Sbjct: 180 PHAPYTCSPKLLTWVREKADETGKMITIHLSETKDEVKQIKEKYGKTP--------VELL 231
Query: 365 MPVDFRSEWIEMIVKGVWKPVDTDKGIEIIVNK-----MNSDSNGTANSRLHTTEKGLEV 419
+ F + + GVW TDK IEI+ + N SN S + + EK L+
Sbjct: 232 DELGFLKNDV-IAAHGVWL---TDKEIEILAKRDVTIVHNPASNMKLGSGVMSLEKLLKA 287
Query: 420 CKDYVQGTNGDEYYQNWPLCDDSERVEILESIHSL 454
+ GT+G N + ++ + +L +H+L
Sbjct: 288 GVNVALGTDGAASNNNLDMIEEMKLAALLHKVHTL 322
>sp|B4JG35|DDRGK_DROGR DDRGK domain-containing protein 1 OS=Drosophila grimshawi
GN=GH19408 PE=3 SV=1
Length = 303
Score = 34.3 bits (77), Expect = 7.1, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 49/82 (59%), Gaps = 5/82 (6%)
Query: 177 GSLLEKEKVGMSNRESKIESMKQQIMKCLQDSRSQKNRKLTAMKADGEEVEDDVIKKDLM 236
G++L+ EK+G R +K+E+ +Q+ ++ Q+ ++ RK+ K + E + D + +
Sbjct: 103 GAVLD-EKMGAKKR-AKMEAKEQKRLQREQELHDREQRKVKEAKEEAERKQQDDLDAE-- 158
Query: 237 GVEMRKKQVEEIIKDLEQQKTY 258
VE ++ + E ++K+L ++K +
Sbjct: 159 -VERKRVEAERVVKELHERKEH 179
>sp|A4Y706|SYT_SHEPC Threonine--tRNA ligase OS=Shewanella putrefaciens (strain CN-32 /
ATCC BAA-453) GN=thrS PE=3 SV=1
Length = 642
Score = 33.9 bits (76), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 570 NANYFDVDADDDSAVTCCHDMCKDDVHRDGNKIVSWLYSNPVVGKHLMSWTRLRDSKRGR 629
N Y+D+D + H + +DD+ +++ +N V K ++SW RD+ R
Sbjct: 100 NGFYYDIDLE--------HKLTQDDIEALEKRMLQLAKTNYDVVKRVVSWQEARDTFAAR 151
Query: 630 GKEVLRIILEE 640
G+E IL+E
Sbjct: 152 GEEYKIAILDE 162
>sp|A1RJI3|SYT_SHESW Threonine--tRNA ligase OS=Shewanella sp. (strain W3-18-1) GN=thrS
PE=3 SV=1
Length = 642
Score = 33.9 bits (76), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 570 NANYFDVDADDDSAVTCCHDMCKDDVHRDGNKIVSWLYSNPVVGKHLMSWTRLRDSKRGR 629
N Y+D+D + H + +DD+ +++ +N V K ++SW RD+ R
Sbjct: 100 NGFYYDIDLE--------HKLTQDDIEALEKRMLQLAKTNYDVVKRVVSWQEARDTFAAR 151
Query: 630 GKEVLRIILEE 640
G+E IL+E
Sbjct: 152 GEEYKIAILDE 162
>sp|Q8EER9|SYT_SHEON Threonine--tRNA ligase OS=Shewanella oneidensis (strain MR-1)
GN=thrS PE=3 SV=1
Length = 642
Score = 33.9 bits (76), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 8/71 (11%)
Query: 570 NANYFDVDADDDSAVTCCHDMCKDDVHRDGNKIVSWLYSNPVVGKHLMSWTRLRDSKRGR 629
N Y+D+D + H + +DD+ +++ +N V K ++SW RD+ R
Sbjct: 100 NGFYYDIDLE--------HKLTQDDIEALEKRMLELAKTNYDVVKRVVSWQEARDTFAAR 151
Query: 630 GKEVLRIILEE 640
G+E IL+E
Sbjct: 152 GEEYKIAILDE 162
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 480,386,063
Number of Sequences: 539616
Number of extensions: 21054974
Number of successful extensions: 66121
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 261
Number of HSP's that attempted gapping in prelim test: 65752
Number of HSP's gapped (non-prelim): 629
length of query: 1267
length of database: 191,569,459
effective HSP length: 129
effective length of query: 1138
effective length of database: 121,958,995
effective search space: 138789336310
effective search space used: 138789336310
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)