Query 037237
Match_columns 1267
No_of_seqs 196 out of 450
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 10:10:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037237.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037237hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04780 DUF629: Protein of un 100.0 4E-137 8E-142 1191.7 35.2 455 272-762 1-466 (466)
2 KOG1887 Ubiquitin carboxyl-ter 100.0 7.3E-94 1.6E-98 854.7 14.0 728 435-1266 1-762 (806)
3 KOG1865 Ubiquitin carboxyl-ter 100.0 1.5E-51 3.2E-56 478.5 19.0 273 939-1267 105-390 (545)
4 cd02668 Peptidase_C19L A subfa 100.0 1.7E-42 3.7E-47 394.6 22.1 263 944-1267 1-285 (324)
5 cd02660 Peptidase_C19D A subfa 100.0 6.7E-42 1.4E-46 388.4 25.3 284 943-1267 1-310 (328)
6 cd02661 Peptidase_C19E A subfa 100.0 1.1E-41 2.4E-46 380.1 22.7 273 942-1267 1-286 (304)
7 cd02657 Peptidase_C19A A subfa 100.0 1.9E-41 4.2E-46 381.2 22.5 265 944-1267 1-280 (305)
8 cd02663 Peptidase_C19G A subfa 100.0 1.7E-41 3.6E-46 382.7 20.0 261 944-1267 1-274 (300)
9 cd02669 Peptidase_C19M A subfa 100.0 6.3E-41 1.4E-45 397.2 23.6 274 943-1267 120-422 (440)
10 cd02664 Peptidase_C19H A subfa 100.0 2.5E-40 5.5E-45 377.8 20.9 249 944-1267 1-302 (327)
11 cd02658 Peptidase_C19B A subfa 100.0 1.1E-39 2.4E-44 368.4 23.3 268 944-1267 1-293 (311)
12 cd02659 peptidase_C19C A subfa 100.0 1E-38 2.2E-43 363.3 21.7 265 943-1267 3-290 (334)
13 cd02667 Peptidase_C19K A subfa 100.0 1.2E-38 2.7E-43 356.1 20.1 225 944-1267 1-261 (279)
14 cd02671 Peptidase_C19O A subfa 100.0 2.8E-38 6E-43 362.4 22.0 258 943-1267 25-305 (332)
15 COG5560 UBP12 Ubiquitin C-term 100.0 6.3E-38 1.4E-42 364.0 12.6 293 942-1267 264-802 (823)
16 COG5533 UBP5 Ubiquitin C-termi 100.0 1.6E-36 3.5E-41 330.0 12.5 292 938-1267 67-393 (415)
17 PF00443 UCH: Ubiquitin carbox 100.0 2.6E-33 5.6E-38 302.1 17.4 236 943-1267 2-249 (269)
18 KOG1867 Ubiquitin-specific pro 100.0 1.6E-33 3.5E-38 335.2 16.8 285 943-1267 162-464 (492)
19 cd02662 Peptidase_C19F A subfa 100.0 3.9E-33 8.5E-38 305.9 17.6 193 944-1267 1-221 (240)
20 KOG1868 Ubiquitin C-terminal h 100.0 1.2E-32 2.7E-37 333.2 8.6 292 939-1267 298-626 (653)
21 cd02674 Peptidase_C19R A subfa 100.0 5.4E-31 1.2E-35 284.0 15.7 178 1036-1267 21-212 (230)
22 cd02666 Peptidase_C19J A subfa 100.0 1.5E-30 3.2E-35 299.6 15.6 280 942-1267 1-319 (343)
23 cd02257 Peptidase_C19 Peptidas 100.0 7.6E-28 1.7E-32 255.0 17.9 194 1036-1267 21-232 (255)
24 cd02673 Peptidase_C19Q A subfa 100.0 3.4E-28 7.4E-33 268.5 15.2 202 1019-1267 15-224 (245)
25 PF13423 UCH_1: Ubiquitin carb 99.9 6.5E-27 1.4E-31 263.9 22.1 276 943-1266 1-295 (295)
26 PF04781 DUF627: Protein of un 99.9 2.3E-28 4.9E-33 236.6 8.8 105 54-162 1-110 (111)
27 cd02672 Peptidase_C19P A subfa 99.9 5.1E-28 1.1E-32 270.4 10.5 223 943-1267 16-256 (268)
28 KOG1866 Ubiquitin carboxyl-ter 99.9 2.5E-28 5.4E-33 288.0 7.5 268 943-1267 96-394 (944)
29 cd02665 Peptidase_C19I A subfa 99.9 4.1E-27 8.8E-32 257.0 15.0 176 1036-1267 21-202 (228)
30 KOG1870 Ubiquitin C-terminal h 99.9 4.1E-25 8.8E-30 279.2 9.8 162 943-1114 247-426 (842)
31 COG5077 Ubiquitin carboxyl-ter 99.9 2.5E-24 5.4E-29 254.3 8.2 265 943-1267 194-469 (1089)
32 KOG0944 Ubiquitin-specific pro 99.9 2.5E-23 5.4E-28 245.3 15.5 204 943-1174 308-522 (763)
33 KOG1864 Ubiquitin-specific pro 99.9 1.3E-21 2.8E-26 237.3 14.4 283 946-1267 234-549 (587)
34 COG5207 UBP14 Isopeptidase T [ 99.8 6.9E-21 1.5E-25 218.1 15.7 217 927-1174 269-510 (749)
35 KOG1863 Ubiquitin carboxyl-ter 99.8 3.4E-21 7.4E-26 249.3 11.5 270 939-1267 167-449 (1093)
36 KOG1873 Ubiquitin-specific pro 99.8 5.4E-21 1.2E-25 227.4 7.2 155 942-1103 205-388 (877)
37 KOG4598 Putative ubiquitin-spe 99.8 5.4E-21 1.2E-25 223.7 3.9 250 937-1267 78-408 (1203)
38 cd02670 Peptidase_C19N A subfa 99.8 7.7E-19 1.7E-23 193.7 14.1 102 1128-1267 79-217 (241)
39 KOG1871 Ubiquitin-specific pro 99.7 1.6E-17 3.5E-22 187.8 9.3 287 942-1267 28-395 (420)
40 KOG1872 Ubiquitin-specific pro 99.7 1.2E-16 2.6E-21 184.9 10.8 271 937-1267 100-442 (473)
41 KOG2026 Spindle pole body prot 99.6 6.8E-15 1.5E-19 166.1 15.1 278 939-1267 129-421 (442)
42 KOG1275 PAB-dependent poly(A) 99.5 9.5E-14 2.1E-18 168.7 12.4 285 950-1266 505-837 (1118)
43 PF15499 Peptidase_C98: Ubiqui 98.4 8.7E-07 1.9E-11 97.5 10.1 128 1078-1264 120-251 (275)
44 PLN03088 SGT1, suppressor of 96.8 0.0033 7.1E-08 74.2 8.4 98 54-165 7-104 (356)
45 PRK15359 type III secretion sy 96.6 0.0092 2E-07 61.4 9.4 100 54-167 29-128 (144)
46 TIGR02552 LcrH_SycD type III s 95.6 0.066 1.4E-06 53.1 9.5 102 50-165 18-119 (135)
47 PRK10370 formate-dependent nit 95.2 0.06 1.3E-06 58.6 8.1 98 55-164 79-178 (198)
48 PRK11189 lipoprotein NlpI; Pro 94.9 0.075 1.6E-06 61.0 8.3 101 52-166 67-167 (296)
49 PRK10803 tol-pal system protei 94.8 0.17 3.8E-06 57.6 10.7 100 47-159 140-246 (263)
50 PF13894 zf-C2H2_4: C2H2-type 94.7 0.023 4.9E-07 40.1 2.2 24 330-353 1-24 (24)
51 PF00096 zf-C2H2: Zinc finger, 94.3 0.031 6.8E-07 39.8 2.1 23 330-353 1-23 (23)
52 COG4783 Putative Zn-dependent 94.2 0.12 2.5E-06 62.6 7.8 100 54-167 311-410 (484)
53 cd00189 TPR Tetratricopeptide 94.1 0.41 9E-06 41.3 9.4 94 53-159 4-97 (100)
54 PRK12370 invasion protein regu 93.7 0.14 3E-06 63.9 7.7 96 58-166 347-442 (553)
55 PF13432 TPR_16: Tetratricopep 93.6 0.065 1.4E-06 47.0 3.2 64 54-125 2-65 (65)
56 COG3063 PilF Tfp pilus assembl 93.2 0.37 8.1E-06 53.8 8.9 100 47-159 33-132 (250)
57 PF13371 TPR_9: Tetratricopept 92.8 0.25 5.5E-06 44.0 5.8 69 58-134 4-72 (73)
58 TIGR02521 type_IV_pilW type IV 92.5 0.63 1.4E-05 48.5 9.3 100 47-159 29-128 (234)
59 TIGR00990 3a0801s09 mitochondr 92.3 0.98 2.1E-05 57.0 12.3 93 53-159 131-223 (615)
60 PRK12370 invasion protein regu 92.2 0.24 5.2E-06 61.9 6.6 93 61-167 316-408 (553)
61 TIGR02795 tol_pal_ybgF tol-pal 91.8 1.1 2.5E-05 42.6 9.4 102 49-164 2-109 (119)
62 TIGR00990 3a0801s09 mitochondr 89.7 0.96 2.1E-05 57.1 8.7 104 51-160 367-497 (615)
63 PF13414 TPR_11: TPR repeat; P 89.7 0.28 6E-06 43.3 2.8 64 52-122 6-69 (69)
64 PRK15174 Vi polysaccharide exp 89.1 0.6 1.3E-05 59.7 6.3 99 54-166 47-145 (656)
65 PRK15174 Vi polysaccharide exp 88.8 1.1 2.4E-05 57.3 8.4 100 56-165 219-318 (656)
66 TIGR00540 hemY_coli hemY prote 88.5 15 0.00032 44.3 17.2 104 50-167 85-189 (409)
67 cd05804 StaR_like StaR_like; a 88.3 2 4.3E-05 49.6 9.3 98 52-159 46-143 (355)
68 PRK02603 photosystem I assembl 87.9 3.9 8.4E-05 43.0 10.4 86 47-140 33-121 (172)
69 PRK15179 Vi polysaccharide bio 87.5 2.4 5.3E-05 54.7 10.2 89 65-167 68-156 (694)
70 KOG1864 Ubiquitin-specific pro 87.0 1.1 2.5E-05 56.5 6.7 108 945-1055 34-152 (587)
71 PRK09782 bacteriophage N4 rece 86.6 3.4 7.3E-05 55.5 11.1 93 61-160 588-707 (987)
72 PRK10866 outer membrane biogen 85.8 11 0.00023 42.7 13.0 68 52-127 35-105 (243)
73 PF13429 TPR_15: Tetratricopep 85.7 0.96 2.1E-05 51.0 4.8 101 53-167 150-250 (280)
74 KOG1887 Ubiquitin carboxyl-ter 85.5 0.35 7.7E-06 61.5 1.3 117 938-1057 441-569 (806)
75 TIGR03302 OM_YfiO outer membra 85.1 7 0.00015 42.7 11.0 108 51-165 72-200 (235)
76 PF12874 zf-met: Zinc-finger o 84.6 0.66 1.4E-05 33.7 1.9 23 330-352 1-23 (25)
77 PF13414 TPR_11: TPR repeat; P 84.2 1.4 3.1E-05 38.8 4.2 65 83-159 3-67 (69)
78 PF09295 ChAPs: ChAPs (Chs5p-A 84.2 2 4.4E-05 51.9 6.8 85 57-154 208-292 (395)
79 PF13525 YfiO: Outer membrane 83.7 12 0.00026 40.9 11.9 114 44-159 37-170 (203)
80 TIGR03302 OM_YfiO outer membra 83.2 4.6 9.9E-05 44.1 8.5 108 48-164 32-148 (235)
81 PF14559 TPR_19: Tetratricopep 83.1 2.1 4.5E-05 37.5 4.8 68 59-134 1-68 (68)
82 PRK09782 bacteriophage N4 rece 83.1 2.7 5.8E-05 56.4 7.9 106 54-167 547-679 (987)
83 TIGR02917 PEP_TPR_lipo putativ 82.3 4.3 9.2E-05 51.5 8.9 104 56-166 743-872 (899)
84 PRK10370 formate-dependent nit 81.3 6.3 0.00014 43.0 8.6 95 62-167 52-146 (198)
85 PLN02789 farnesyltranstransfer 81.3 6.7 0.00015 46.2 9.4 107 42-159 30-137 (320)
86 PF04959 ARS2: Arsenite-resist 81.1 0.74 1.6E-05 51.1 1.4 42 315-357 60-105 (214)
87 TIGR02917 PEP_TPR_lipo putativ 80.9 4.9 0.00011 51.0 8.8 93 54-159 164-256 (899)
88 PRK10747 putative protoheme IX 80.6 88 0.0019 37.7 18.8 101 53-167 88-189 (398)
89 PF13371 TPR_9: Tetratricopept 80.6 2.6 5.7E-05 37.4 4.5 51 111-167 15-65 (73)
90 TIGR02521 type_IV_pilW type IV 79.2 16 0.00034 38.1 10.5 104 51-159 67-198 (234)
91 KOG2076 RNA polymerase III tra 78.9 12 0.00026 48.8 11.0 100 47-159 137-236 (895)
92 PRK10747 putative protoheme IX 78.4 7.5 0.00016 46.7 8.8 88 58-159 303-390 (398)
93 PF13432 TPR_16: Tetratricopep 78.0 3.9 8.4E-05 35.7 4.7 49 111-165 17-65 (65)
94 COG4105 ComL DNA uptake lipopr 77.9 49 0.0011 38.1 14.3 71 53-129 38-109 (254)
95 PRK10049 pgaA outer membrane p 77.5 5.3 0.00012 52.1 7.8 96 55-165 55-150 (765)
96 PLN03098 LPA1 LOW PSII ACCUMUL 77.3 9.5 0.0002 46.8 9.1 66 48-121 74-142 (453)
97 PRK10049 pgaA outer membrane p 77.1 5.8 0.00013 51.8 7.9 101 53-167 363-463 (765)
98 PF05605 zf-Di19: Drought indu 76.7 1.8 3.9E-05 37.7 2.2 26 331-357 4-29 (54)
99 PRK15179 Vi polysaccharide bio 76.0 7.8 0.00017 50.2 8.5 95 59-167 96-190 (694)
100 PF12895 Apc3: Anaphase-promot 75.7 7 0.00015 36.1 6.0 81 62-156 2-84 (84)
101 PF12171 zf-C2H2_jaz: Zinc-fin 74.9 1.5 3.2E-05 32.8 1.0 22 330-351 2-23 (27)
102 PRK11447 cellulose synthase su 74.5 13 0.00028 51.0 10.4 106 55-166 391-530 (1157)
103 PLN03088 SGT1, suppressor of 74.4 7.1 0.00015 46.5 7.1 81 52-140 39-119 (356)
104 PF14863 Alkyl_sulf_dimr: Alky 73.9 6.6 0.00014 41.1 5.8 69 41-114 66-134 (141)
105 PF13174 TPR_6: Tetratricopept 73.7 3.3 7.2E-05 31.0 2.8 29 54-82 5-33 (33)
106 PRK11788 tetratricopeptide rep 73.6 17 0.00037 42.5 9.9 43 53-95 184-226 (389)
107 PF12756 zf-C2H2_2: C2H2 type 72.6 2.6 5.7E-05 39.6 2.4 61 294-355 11-76 (100)
108 COG4049 Uncharacterized protei 72.6 1.9 4.1E-05 38.1 1.3 30 328-357 16-45 (65)
109 smart00355 ZnF_C2H2 zinc finge 71.7 2.9 6.3E-05 29.4 1.9 24 330-354 1-24 (26)
110 PF13525 YfiO: Outer membrane 71.6 70 0.0015 34.9 13.4 67 53-127 9-78 (203)
111 KOG0624 dsRNA-activated protei 71.0 17 0.00037 43.2 8.7 98 52-163 158-255 (504)
112 PRK11906 transcriptional regul 70.8 29 0.00063 42.9 11.0 115 46-167 252-374 (458)
113 PHA00616 hypothetical protein 70.8 2.1 4.5E-05 36.3 1.1 25 331-355 3-27 (44)
114 KOG4340 Uncharacterized conser 70.5 1.5E+02 0.0032 35.1 15.8 55 54-109 183-249 (459)
115 PF13945 NST1: Salt tolerance 70.0 2.6 5.6E-05 46.1 1.9 33 266-299 99-131 (190)
116 PRK14574 hmsH outer membrane p 69.9 20 0.00043 47.6 10.1 103 48-167 33-138 (822)
117 CHL00033 ycf3 photosystem I as 69.2 28 0.0006 36.4 9.4 108 43-158 29-141 (168)
118 TIGR02552 LcrH_SycD type III s 68.9 11 0.00024 37.2 6.1 83 71-167 5-87 (135)
119 PF13512 TPR_18: Tetratricopep 68.8 17 0.00038 38.2 7.5 75 50-125 48-133 (142)
120 TIGR00540 hemY_coli hemY prote 67.8 32 0.00069 41.5 10.7 101 48-159 262-364 (409)
121 KOG0548 Molecular co-chaperone 67.7 25 0.00053 43.9 9.5 93 54-159 363-455 (539)
122 PRK15359 type III secretion sy 67.1 14 0.00029 38.2 6.4 81 51-139 60-140 (144)
123 PRK11906 transcriptional regul 66.9 14 0.0003 45.5 7.3 85 62-159 317-401 (458)
124 KOG0553 TPR repeat-containing 66.8 24 0.00053 41.2 8.8 97 47-159 82-178 (304)
125 PF13912 zf-C2H2_6: C2H2-type 65.9 3.7 8E-05 30.3 1.5 22 331-352 3-24 (27)
126 COG5010 TadD Flp pilus assembl 64.4 33 0.00072 39.4 9.1 92 55-159 106-197 (257)
127 PF13512 TPR_18: Tetratricopep 63.1 69 0.0015 33.8 10.6 67 54-128 15-84 (142)
128 PF13913 zf-C2HC_2: zinc-finge 62.6 5 0.00011 29.9 1.6 19 331-350 4-22 (25)
129 PRK14574 hmsH outer membrane p 62.5 53 0.0012 43.7 11.9 94 58-166 111-204 (822)
130 PRK10866 outer membrane biogen 62.5 64 0.0014 36.5 11.1 84 42-125 62-158 (243)
131 PF15297 CKAP2_C: Cytoskeleton 62.2 3.2 6.9E-05 49.1 0.8 89 238-333 44-146 (353)
132 PF13428 TPR_14: Tetratricopep 61.8 11 0.00024 31.0 3.7 37 54-90 6-42 (44)
133 PHA02768 hypothetical protein; 61.7 5.7 0.00012 35.4 2.0 23 331-354 7-29 (55)
134 KOG0553 TPR repeat-containing 61.3 11 0.00024 43.9 4.8 62 92-159 76-144 (304)
135 KOG2610 Uncharacterized conser 61.0 23 0.0005 42.0 7.3 98 56-167 110-211 (491)
136 PRK11788 tetratricopeptide rep 60.4 26 0.00057 40.9 8.0 98 49-159 141-243 (389)
137 PF13429 TPR_15: Tetratricopep 60.2 12 0.00026 42.3 4.9 51 111-167 166-216 (280)
138 PLN02789 farnesyltranstransfer 60.0 30 0.00064 40.9 8.2 90 63-164 85-175 (320)
139 PF14353 CpXC: CpXC protein 59.9 5 0.00011 40.7 1.7 48 1092-1154 1-49 (128)
140 PRK11447 cellulose synthase su 58.4 23 0.00051 48.5 8.0 42 114-160 660-701 (1157)
141 PF14559 TPR_19: Tetratricopep 57.8 11 0.00023 33.0 3.2 48 111-164 11-58 (68)
142 PRK10153 DNA-binding transcrip 56.9 57 0.0012 41.1 10.4 103 52-160 342-450 (517)
143 PF12688 TPR_5: Tetratrico pep 55.7 84 0.0018 32.1 9.5 91 55-158 7-103 (120)
144 COG4235 Cytochrome c biogenesi 54.2 55 0.0012 38.3 8.9 100 58-167 165-264 (287)
145 PRK11189 lipoprotein NlpI; Pro 53.0 51 0.0011 38.0 8.6 97 52-162 101-197 (296)
146 KOG4162 Predicted calmodulin-b 52.6 55 0.0012 42.6 9.1 77 82-164 432-512 (799)
147 PF09237 GAGA: GAGA factor; I 52.4 11 0.00024 33.2 2.2 26 330-355 25-50 (54)
148 PF05605 zf-Di19: Drought indu 52.2 7.5 0.00016 33.9 1.2 42 293-353 12-53 (54)
149 COG1729 Uncharacterized protei 51.4 95 0.0021 36.0 10.1 84 50-141 142-231 (262)
150 KOG1126 DNA-binding cell divis 51.0 37 0.00081 43.2 7.3 99 62-167 434-559 (638)
151 cd05804 StaR_like StaR_like; a 49.5 49 0.0011 38.2 7.8 98 49-159 114-215 (355)
152 KOG2002 TPR-containing nuclear 47.1 70 0.0015 42.6 9.0 109 48-167 163-272 (1018)
153 COG2015 Alkyl sulfatase and re 45.9 24 0.00053 43.5 4.5 96 6-114 420-516 (655)
154 PF12756 zf-C2H2_2: C2H2 type 45.3 7.2 0.00016 36.7 0.1 26 332-357 2-27 (100)
155 PF14853 Fis1_TPR_C: Fis1 C-te 44.5 48 0.001 29.2 5.0 44 55-98 7-50 (53)
156 PRK15363 pathogenicity island 44.3 97 0.0021 33.3 8.2 93 53-153 39-133 (157)
157 PF13431 TPR_17: Tetratricopep 44.0 17 0.00037 28.7 2.0 32 114-150 2-33 (34)
158 PF12355 Dscam_C: Down syndrom 44.0 19 0.00042 36.0 2.7 46 9-56 52-97 (124)
159 PF09976 TPR_21: Tetratricopep 43.5 70 0.0015 32.7 7.0 90 53-155 15-110 (145)
160 PF00515 TPR_1: Tetratricopept 43.5 27 0.00058 26.6 3.0 15 145-159 16-30 (34)
161 PF12569 NARP1: NMDA receptor- 42.0 63 0.0014 40.8 7.5 94 47-153 192-285 (517)
162 CHL00033 ycf3 photosystem I as 41.6 85 0.0018 32.8 7.4 74 51-125 74-154 (168)
163 PF07719 TPR_2: Tetratricopept 41.3 40 0.00086 25.3 3.6 27 131-163 7-33 (34)
164 PRK10153 DNA-binding transcrip 41.2 54 0.0012 41.3 6.8 86 66-167 401-489 (517)
165 smart00451 ZnF_U1 U1-like zinc 40.6 20 0.00043 27.9 1.9 22 331-352 5-26 (35)
166 KOG2675 Adenylate cyclase-asso 40.3 28 0.00062 42.3 3.9 26 56-81 267-293 (480)
167 KOG1463 26S proteasome regulat 39.0 1.1E+02 0.0024 36.7 8.3 77 239-325 41-122 (411)
168 KOG1840 Kinesin light chain [C 38.6 5.6E+02 0.012 32.6 14.8 108 47-161 197-314 (508)
169 PF03704 BTAD: Bacterial trans 38.6 3.4E+02 0.0073 27.4 11.0 108 48-159 5-132 (146)
170 PHA00733 hypothetical protein 38.4 20 0.00044 36.9 2.1 25 330-354 100-124 (128)
171 PF12037 DUF3523: Domain of un 37.9 67 0.0015 37.4 6.2 34 41-74 25-59 (276)
172 TIGR02795 tol_pal_ybgF tol-pal 37.6 55 0.0012 30.9 4.9 68 51-126 41-111 (119)
173 KOG2471 TPR repeat-containing 37.0 1.4E+02 0.003 37.4 8.8 103 54-159 514-648 (696)
174 COG3478 Predicted nucleic-acid 36.7 29 0.00062 31.9 2.4 35 1140-1174 1-39 (68)
175 KOG0547 Translocase of outer m 35.9 69 0.0015 40.0 6.2 104 50-159 361-491 (606)
176 PRK02603 photosystem I assembl 35.9 75 0.0016 33.4 5.9 75 51-125 74-154 (172)
177 COG1592 Rubrerythrin [Energy p 35.6 29 0.00064 37.4 2.8 27 311-340 119-145 (166)
178 KOG1125 TPR repeat-containing 34.6 1.1E+02 0.0024 38.8 7.7 87 62-161 443-529 (579)
179 PF09295 ChAPs: ChAPs (Chs5p-A 34.0 1.3E+02 0.0028 36.9 8.1 86 62-164 182-267 (395)
180 KOG4642 Chaperone-dependent E3 33.9 3.3E+02 0.0071 31.6 10.5 95 72-186 34-130 (284)
181 KOG0547 Translocase of outer m 33.0 2.7E+02 0.0058 35.1 10.4 87 60-159 337-423 (606)
182 KOG0550 Molecular chaperone (D 32.4 99 0.0022 37.9 6.6 96 52-160 252-351 (486)
183 PF05408 Peptidase_C28: Foot-a 31.8 25 0.00055 38.4 1.6 20 943-964 34-53 (193)
184 KOG0624 dsRNA-activated protei 31.6 2.4E+02 0.0051 34.2 9.3 103 44-159 33-135 (504)
185 PF08715 Viral_protease: Papai 30.6 51 0.0011 39.1 4.0 70 951-1053 109-179 (320)
186 cd02673 Peptidase_C19Q A subfa 30.6 23 0.00049 40.2 1.1 28 950-977 5-32 (245)
187 COG5010 TadD Flp pilus assembl 30.4 1.8E+02 0.0039 33.6 8.0 108 42-167 62-170 (257)
188 KOG4234 TPR repeat-containing 30.2 5.5E+02 0.012 29.2 11.3 90 58-159 104-197 (271)
189 cd00189 TPR Tetratricopeptide 30.0 97 0.0021 26.2 4.8 47 51-97 36-82 (100)
190 PF09538 FYDLN_acid: Protein o 28.9 21 0.00046 35.9 0.4 14 330-343 10-23 (108)
191 PF13281 DUF4071: Domain of un 28.9 1.8E+02 0.0039 35.4 8.1 85 54-141 184-275 (374)
192 PF15601 Imm42: Immunity prote 28.6 96 0.0021 32.6 5.0 47 278-325 79-128 (134)
193 COG3071 HemY Uncharacterized e 28.6 9.2E+02 0.02 29.8 13.6 95 52-159 87-182 (400)
194 COG4235 Cytochrome c biogenesi 28.5 1.8E+02 0.004 34.1 7.8 109 47-167 121-229 (287)
195 PRK14720 transcript cleavage f 28.1 2.8E+02 0.0061 37.5 10.3 103 54-167 35-152 (906)
196 KOG2076 RNA polymerase III tra 28.1 4.2E+02 0.0091 35.5 11.5 132 55-218 420-552 (895)
197 KOG2053 Mitochondrial inherita 28.0 2.1E+02 0.0045 38.2 8.8 96 54-163 14-109 (932)
198 PF01927 Mut7-C: Mut7-C RNAse 27.7 28 0.0006 36.5 1.0 13 328-340 123-135 (147)
199 PF04733 Coatomer_E: Coatomer 26.6 2.1E+02 0.0046 33.4 8.0 101 55-167 137-237 (290)
200 PHA00732 hypothetical protein 26.3 41 0.00089 32.0 1.8 24 331-354 3-26 (79)
201 PF12895 Apc3: Anaphase-promot 26.3 32 0.00069 31.7 1.1 43 55-98 31-73 (84)
202 PF12907 zf-met2: Zinc-binding 25.7 17 0.00038 30.4 -0.7 26 331-356 3-31 (40)
203 COG4105 ComL DNA uptake lipopr 25.4 1.6E+02 0.0034 34.1 6.4 76 49-125 71-150 (254)
204 COG2956 Predicted N-acetylgluc 25.3 1.6E+02 0.0035 35.3 6.6 68 50-125 181-248 (389)
205 KOG1127 TPR repeat-containing 25.2 1.1E+02 0.0024 41.1 5.7 117 49-174 2-118 (1238)
206 PF02891 zf-MIZ: MIZ/SP-RING z 24.5 21 0.00045 31.0 -0.5 19 316-337 31-49 (50)
207 PRK09591 celC cellobiose phosp 24.5 2.5E+02 0.0055 28.2 7.0 58 50-110 21-78 (104)
208 PHA02998 RNA polymerase subuni 24.5 93 0.002 34.0 4.1 21 1084-1104 134-155 (195)
209 PF06160 EzrA: Septation ring 24.5 82 0.0018 40.1 4.5 38 45-82 511-550 (560)
210 smart00531 TFIIE Transcription 24.1 58 0.0013 34.2 2.6 13 1140-1152 120-132 (147)
211 PF02255 PTS_IIA: PTS system, 23.9 3.2E+02 0.007 27.0 7.5 58 50-110 15-72 (96)
212 KOG3891 Secretory vesicle-asso 23.4 2.3E+02 0.0049 34.0 7.2 114 130-307 118-231 (436)
213 PF13226 DUF4034: Domain of un 23.4 1.1E+02 0.0024 35.7 4.8 75 67-146 61-151 (277)
214 PF07719 TPR_2: Tetratricopept 23.2 1.4E+02 0.003 22.3 3.9 28 54-81 6-33 (34)
215 KOG1128 Uncharacterized conser 22.7 2.7E+02 0.0059 36.5 8.3 93 60-167 496-588 (777)
216 KOG1126 DNA-binding cell divis 22.1 3E+02 0.0065 35.6 8.5 107 44-164 462-590 (638)
217 PF10932 DUF2783: Protein of u 22.1 1E+02 0.0022 28.1 3.3 33 124-156 26-60 (60)
218 KOG0551 Hsp90 co-chaperone CNS 22.0 1.3E+03 0.028 28.2 12.9 20 48-67 59-79 (390)
219 KOG1308 Hsp70-interacting prot 21.9 1.4E+02 0.0031 35.9 5.4 81 42-130 99-187 (377)
220 KOG1156 N-terminal acetyltrans 21.5 3E+02 0.0066 35.6 8.3 95 53-160 11-105 (700)
221 KOG2169 Zn-finger transcriptio 21.3 65 0.0014 41.7 2.8 92 282-390 294-396 (636)
222 TIGR02300 FYDLN_acid conserved 21.2 37 0.00081 35.1 0.5 14 330-343 10-23 (129)
No 1
>PF04780 DUF629: Protein of unknown function (DUF629); InterPro: IPR006865 This domain represents a region of several plant proteins of unknown function. A C2H2 zinc finger is predicted in this region in some family members, but the spacing between the cysteine residues is not conserved throughout the family.
Probab=100.00 E-value=3.6e-137 Score=1191.74 Aligned_cols=455 Identities=33% Similarity=0.593 Sum_probs=440.7
Q ss_pred HHHHhhhccCCChhhhccceeeehHHHHHHHHhhccchHHHHHHHHHHHHHhcCceeeeecCccccccCChHHHHHHhHh
Q 037237 272 EKYVSFWSSGLNSDKKRGFLKVNKEELKKYVKSLKNDFVEKIFSEALSFAEEHKTWKFSECFVCVEKIGNPQLCEKHFRS 351 (1267)
Q Consensus 272 ~~~r~yW~~~ls~e~kr~FL~V~i~eLksy~~~~~~~~~~~~Ls~al~fak~~~~WrfW~C~~C~~kF~d~~~~~~H~~~ 351 (1267)
++||+||++ ||+|+||+||+|+|++|++||.+++++.++++|++||+||++|++|+||+||+|++||+++++|++||++
T Consensus 1 ~~vr~yW~s-ms~E~kr~FLkVsi~eL~sy~~~~~~~~a~~~Lseal~fak~n~sWrFWiCp~CskkF~d~~~~~~H~~~ 79 (466)
T PF04780_consen 1 DRVRSYWNS-MSSEQKRDFLKVSIDELKSYYESVYDREAADALSEALSFAKENKSWRFWICPRCSKKFSDAESCLSHMEQ 79 (466)
T ss_pred CchhHhhcc-CCHHHhcCceeeEHHHHHHHHHhccchHHHHHHHHHHHHHHhcCceeEeeCCcccceeCCHHHHHHHHHH
Confidence 479999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCcccccCCCCccccHHHHHhhhcCCccccchhhHHHHHhhhcccCCCCCCCCCCcccccccccccccccCCCCCc
Q 037237 352 SHWNHLEIMVQPLMPVDFRSEWIEMIVKGVWKPVDTDKGIEIIVNKMNSDSNGTANSRLHTTEKGLEVCKDYVQGTNGDE 431 (1267)
Q Consensus 352 eH~~~l~p~~~~~~Pq~i~~~w~~~i~~~~WkPvD~~aa~~~i~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 431 (1267)
+|+++++|+++++|||+||++|++||++|+||||||+||+||||||+| +++ +|.|+ ||
T Consensus 80 eH~~~l~P~lqs~lPqrId~~w~e~I~~~~WkPvD~~AA~~mik~~~k-----------~~~-~~~~~----------~g 137 (466)
T PF04780_consen 80 EHPAGLKPKLQSVLPQRIDDDWAEMISVGSWKPVDAVAAVEMIKNRLK-----------DVK-SFVYK----------NG 137 (466)
T ss_pred hhhhhcChhhhhhcCcccCHHHHHHHhcCCCccccHHHHHHHHHHHHh-----------hcc-hhhhh----------cC
Confidence 999999999999999999999999999999999999999999999999 776 48999 99
Q ss_pred cCCCCCCCCcHHHHHHHHHHHHHHHHHHhh--hccCccccchhhhhcHHHHhhccchhhhh-cccCC-CCceecccCccc
Q 037237 432 YYQNWPLCDDSERVEILESIHSLFLLLLRG--LARGRRVVGWAMHYAIYMLETIAPVLQFK-CHSLK-IPEVICFLGASQ 507 (1267)
Q Consensus 432 ~~~~WPl~dD~eR~klL~kI~~~f~~l~~~--Ls~s~~~~~~vi~ft~~~l~~~~s~s~~~-~~~~~-tP~~ICFL~~~~ 507 (1267)
|+++||||+|+||+|||||||.||++||+| ||||| +||||+||++||++++++++.+ +|+|+ ||||||||||+|
T Consensus 138 w~~~WPla~DeeR~klLkkI~~ll~~l~~~k~Ls~s~--~~~vi~ft~~~L~~l~v~~~~L~~~~l~~tP~~ICFLe~~~ 215 (466)
T PF04780_consen 138 WSKDWPLADDEERAKLLKKIHSLLKSLCKHKILSCSH--RDWVIQFTVEELQKLEVSSQLLVNCSLDETPQCICFLECSQ 215 (466)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHhcCcccHHH--HHHHHHhhHHHHhccCcchhhhhhccCCCCCceeEecCcHH
Confidence 999999999999999999999999999999 99999 9999999999999999886665 78887 999999999999
Q ss_pred hHHHHHHHHHHHhhhCCCCCccccccccccccCCCcceeeEeeccCcceeeeccccccccccCCCccCccCCCCCccc-c
Q 037237 508 LRELNFFVHDLTRTCGLNDYSDIIRNLIDNHYTGLNVKERVVFNRDLTCLLLDERLLVGEFTNANYFDVDADDDSAVT-C 586 (1267)
Q Consensus 508 L~~il~fL~~l~~~c~~~~~~e~~~~~~~~~~~~~~vke~I~~~~~~s~LlLD~rll~~~~~~~~~~~~~~dd~~~~~-~ 586 (1267)
|++||+|||+|+ |+.+++++++++++|+|+++++|||||+||+||||||||+|||+|+.++ +||+|+|+ |
T Consensus 216 L~~Il~fL~~l~--~~~~~~~~~v~~~~~~~~~~~~vkekI~ld~~~S~LLLDkrll~~~~~~-------~dd~gti~~~ 286 (466)
T PF04780_consen 216 LNKILKFLQELK--CRRDDGTSLVCRDVDSFWEGSRVKEKIDLDSDFSCLLLDKRLLKGELDP-------FDDEGTINVF 286 (466)
T ss_pred HHHHHHHHHHHh--hccccCcccccccccccccccccceeeecCCccceeeechhhhccCCCc-------cCcCCceecc
Confidence 999999999995 9999999999999999999999999999999999999999999999975 56666666 9
Q ss_pred cccCCCCCCCCCCCceeeecccCCcCcccccchhhhhhhhccchHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHH
Q 037237 587 CHDMCKDDVHRDGNKIVSWLYSNPVVGKHLMSWTRLRDSKRGRGKEVLRIILEEFLHLTTAQSRLSKLRGRMEALWAIQT 666 (1267)
Q Consensus 587 ~~~~~~~~~~~~gD~~~sWL~~~~s~~~~~~sw~~~re~~~~~~~~vl~~~~~~~~~l~~~~~kk~~~l~ye~al~~ve~ 666 (1267)
+|++||+|++|+||+|+||||+|||++++|++|+++|+++++||+||||+|++||++|+++|+||++||+||+||++||+
T Consensus 287 ~~~~~~~~~~~~gD~ilsWlf~~~s~~~~l~sw~~~~~~~~~~~~avl~~v~~~~~~L~~~y~kK~~~l~ye~aL~~ve~ 366 (466)
T PF04780_consen 287 DPNVHYADVQPQGDDILSWLFDGPSIDEQLPSWIRMREHNLDIWVAVLRAVEKEFRTLQSKYEKKCEHLSYEEALQAVEN 366 (466)
T ss_pred CCCcccccCCCCCCceeEEeccCCcccccccchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcccCCCCCCchHHHHHHHhhhhhccCC-C--CCccceehhhhhHHHHHHhhcCCCCCCCCcchh--hhhhcc
Q 037237 667 ICIQEIKNREQRPERAPQPYIELLRKRKNYIQGNG-D--IASKTESEMIPHVLKEAVLALSSDHQCGLDKCE--LEDALK 741 (1267)
Q Consensus 667 lc~eE~~rR~~~~e~~~~~Y~slL~~~~eel~~~~-d--~~~~~~l~~i~~Vl~~~~~~~~t~~~~d~e~~~--~~~~~~ 741 (1267)
||+||++||++++|+||++|||+||+||||+++++ | +++|+|+|||+|||+||++ |+++|.++++|. |+++..
T Consensus 367 lc~~E~~rR~~~~e~~~~~y~slL~~~~eel~~~~~d~~~~~k~~l~~v~~Vl~~a~~--~~f~~~~~~~~~~~i~~~~s 444 (466)
T PF04780_consen 367 LCLEEDKRRENLPEDQWQSYASLLRKRCEELVENDDDNSLSTKFELDAVRDVLKEAST--PTFNFFGYEDCTSLIRDLKS 444 (466)
T ss_pred HHhhcccccccccchhhHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHhhccc--CCCCCcccHHHHHHHhcccc
Confidence 99999999999999999999999999999999888 5 9999999999999999999 999999999997 999999
Q ss_pred -cchHHHHHHHHHHHHHHHHHh
Q 037237 742 -HTDNCVLLALQKLKMEMLKKM 762 (1267)
Q Consensus 742 -~~D~~v~~~i~~lk~~~~~k~ 762 (1267)
.+|+.|+++|..|+++++.+|
T Consensus 445 ~~~dd~~~~~~~~l~s~v~~~~ 466 (466)
T PF04780_consen 445 GESDDRVKKSIHLLDSVVQFKV 466 (466)
T ss_pred cccchHHHHHHHHHHHHHhhcC
Confidence 899999999999999998875
No 2
>KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.3e-94 Score=854.74 Aligned_cols=728 Identities=23% Similarity=0.358 Sum_probs=634.5
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHhh--hccCccccchhhhhcHHHHhhcc-chhhhhcccCCCCceecccCccchHHH
Q 037237 435 NWPLCDDSERVEILESIHSLFLLLLRG--LARGRRVVGWAMHYAIYMLETIA-PVLQFKCHSLKIPEVICFLGASQLREL 511 (1267)
Q Consensus 435 ~WPl~dD~eR~klL~kI~~~f~~l~~~--Ls~s~~~~~~vi~ft~~~l~~~~-s~s~~~~~~~~tP~~ICFL~~~~L~~i 511 (1267)
+||++.|++|+++|++||.+++.|+.+ ++|++ ++|+|.||+.||.++. |..-++++.+.|||+||||++++|.+|
T Consensus 1 ~~~~~~~~~~~~llk~i~l~l~~~~~~k~~s~si--r~~~m~~p~~~l~~~~~Seh~~~~~~v~t~qs~~~le~~~l~~i 78 (806)
T KOG1887|consen 1 EWPLAEDEERSKLAKEIKLLLVSFCDRKILSCSI--RDWLMGFPVKHLGQLEVSEHSLDSRLVETPQSICFLENPELYQV 78 (806)
T ss_pred CCchhhhhhHHHHHHHHHHHHhhhhhhhhccCcc--cchhhcCCHHHhccceecccccchhhhcccchhhhhccHHHHHH
Confidence 599999999999999999999999988 99999 9999999999998887 763339999999999999999999999
Q ss_pred HHHHHHHHhhhCCCCCccccccccccccCCCcceeeEeeccCcceeeeccccccccccCCCccCccCCCCCccc-ccccC
Q 037237 512 NFFVHDLTRTCGLNDYSDIIRNLIDNHYTGLNVKERVVFNRDLTCLLLDERLLVGEFTNANYFDVDADDDSAVT-CCHDM 590 (1267)
Q Consensus 512 l~fL~~l~~~c~~~~~~e~~~~~~~~~~~~~~vke~I~~~~~~s~LlLD~rll~~~~~~~~~~~~~~dd~~~~~-~~~~~ 590 (1267)
++|+..+ .|.+++|.+++++++++++..++||++|++|+++++|+||+|++.+.... +||+|+++ |+|++
T Consensus 79 ~~~~~~~--~~~~~~g~~l~~~~~~~~~~~~~~~~k~d~d~~~~~~~~~~rl~~~~~~~-------~~~~g~~n~~~p~~ 149 (806)
T KOG1887|consen 79 LDFLKKI--KCQRNDGTGLVCRAVYSFFSRTRVKSKIDFDAQFSVLLLDKRLLKSKGNR-------FDDEGTINVFDPEA 149 (806)
T ss_pred HHHHHhh--ccccccCCccccccccceeeeeecccccCCchhhhhhhhcchhhhccCcc-------ccCCCcccccCchH
Confidence 9999999 89999999999999999999999999999999999999999999998866 88899999 99999
Q ss_pred CCCCCCCCCCceeeecccCCcCcccccchhhhhhhhccchHHHHHHHHHHHHHHHHHHHHhhhhhchHHHHHHHHHHHHH
Q 037237 591 CKDDVHRDGNKIVSWLYSNPVVGKHLMSWTRLRDSKRGRGKEVLRIILEEFLHLTTAQSRLSKLRGRMEALWAIQTICIQ 670 (1267)
Q Consensus 591 ~~~~~~~~gD~~~sWL~~~~s~~~~~~sw~~~re~~~~~~~~vl~~~~~~~~~l~~~~~kk~~~l~ye~al~~ve~lc~e 670 (1267)
||.++.++||.+++||.++.+.+..| +.++|++++++|++|+|++++||+++.+.|+||++++.|.+||+.++++|++
T Consensus 150 ~~~~~~~~~d~iiswl~~~v~~d~~f--p~~~~~~nl~~~~~~~rav~~tc~~~~t~~~~~~~~~~~~~~~~~~~~k~~~ 227 (806)
T KOG1887|consen 150 HYAKTKSQLDDIISWLEDYVLENKIF--PRPIREHNLDIWMAVLRAKQFTCRTLATKYAKKILVLKYDAALTDPENKCMR 227 (806)
T ss_pred hhhhhhhhcchhhhhhhhhhhccccC--CchhhhccchhHHHHHHHHHHHHHHHhhHHHHHHHhhchhhhhcchhhhhcc
Confidence 99999999999999999989999997 9999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcccCCCCCCchHHHHHHHhhhhhccCCCCCccceehhhhhHHHHHHhhcCCCCCCCCcchh--hhhhcccchHHHH
Q 037237 671 EIKNREQRPERAPQPYIELLRKRKNYIQGNGDIASKTESEMIPHVLKEAVLALSSDHQCGLDKCE--LEDALKHTDNCVL 748 (1267)
Q Consensus 671 E~~rR~~~~e~~~~~Y~slL~~~~eel~~~~d~~~~~~l~~i~~Vl~~~~~~~~t~~~~d~e~~~--~~~~~~~~D~~v~ 748 (1267)
||.||++.+++||..||++|++.|+|.+..+-+.++.++++|+|||.+++. ||+.|.++++|. ++.|++.+|++|.
T Consensus 228 ed~r~~n~~~dq~~~y~~~~~~~~qe~~~~~~~~~~~~~~~v~d~~~~~s~--p~~~~~~~~~c~N~~~~~~~~~~~~~~ 305 (806)
T KOG1887|consen 228 EDERRKNKPEDQWLEYEQLLLDSCQEQQIEQSLQTKLFLCAVRDVLEGASS--PTFAFADASDCLNLIREHKQEKDDAVL 305 (806)
T ss_pred hhhhhhcchHHHHHHHHHhchHHHHHHHHHhhhhhhhHHHHHHhhhccccC--CCCCccchHhhcchhhhccccccceec
Confidence 999999999999999999999999998722228999999999999999999 999999999999 9999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHhhHHHHHhhhhccccccccccchhhhHhhHHHHhhhhhHHHHHHHHHHH---hhhhh-
Q 037237 749 LALQKLKMEMLKKMAFVDATILRHIEVLQMYIPVLEKLCLYDYRSIIVPLLKLFLQVGKVVDELIEIEEKK---LKEHV- 824 (1267)
Q Consensus 749 ~~i~~lk~~~~~k~~~iD~~Il~~~~~~~~l~~~L~~~s~~Dyr~~iLPl~K~fl~~~~~L~~~~~~~~k~---~~~~~- 824 (1267)
.+|..||..++.+|.++|++||.++++++.|.+.|.++++||||+||++++|.|+ ++++++|++|+ ++.++
T Consensus 306 ~~i~~l~s~s~~~v~~~~s~il~~~~sr~~l~~~~~r~~~~~~~s~~~~~~~~~~-----~~e~k~~~~k~k~~~~~~~l 380 (806)
T KOG1887|consen 306 PSIDLLKSVSTQKVLLKDSKILLISESRISLLNSLSRTSTFDNRSYDLRLKKPFL-----LDEIKNMEKKAKKDLAEADL 380 (806)
T ss_pred CCcchhhhhhhheeccchhhhhccchhhhhhhhcccccccccchhhhhhhcchhh-----hhhhhhcchhhhhhhhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999 99999999665 33333
Q ss_pred --hhhcchhhhhhhhhccC------CCCCC----CCCCCCCCCCCCCCCCCCCCccccchHHHHhhhccccccccCCCCc
Q 037237 825 --ENQKHFECEASLRARKH------GAGFT----NEAADVPVLSDNPNSKVGENADEMSATEEKQLEAHPEYQSQFEPGA 892 (1267)
Q Consensus 825 --~~~~~~~~~~~~~kkk~------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~l~~~le~q~~~e~e~ 892 (1267)
+.++++...+.+.||+. +++++ ....++++.+++|++ +.+.++..+|++ ||+|+
T Consensus 381 ~~e~ek~~~~~~~~~~k~~~~~~~~s~~~ss~l~~~~~~~~~~~l~~~~----s~~s~~~~~e~s----------~~~~~ 446 (806)
T KOG1887|consen 381 LSELEKEKPSKHQSKKKKQGSNKRTSTSKSSLLDKTVEHKHSHGLEPYS----SSPSLGKSEEGS----------MEPED 446 (806)
T ss_pred hhHHHHhhhccccccccccccccCcccccCCccccccccccccccCCCC----CccccccccCCc----------ccccc
Confidence 44444421122222222 22222 344566677899998 899999999999 99986
Q ss_pred ccCcccccccccccccccccccc--cCCCCCCCCCch-hhhHHHHHH--HHhhhhhhccCCCCCCcchHHHHHHHhhCcH
Q 037237 893 TLGVNEFGFGFTNEAAVVCSSVL--SDNPISRDGENA-DELKELERE--IEAYLEYWRQFENGTTDSFVNMIVKSLWHLR 967 (1267)
Q Consensus 893 ~~~~~~~~~~~~~~~~~~~~~~l--s~~~~~~~g~n~-~~~~~~~~e--~~~~l~~gL~N~~GgNTCFLNSILQcL~H~p 967 (1267)
. +++|+|.+ |+|++.+.--+. -.++.|+.| .+++.+...+-.+..++.-+-.+|-+++++.
T Consensus 447 ~--------------~~~e~g~le~s~~~~~q~e~~k~~~~~~~p~e~~~s~~~e~~~~~~~~~~~saldm~lk~~~n~~ 512 (806)
T KOG1887|consen 447 G--------------LSNENGNLEISSNTRNQEEATKDPDMKNMPPEDSRSSHTESAIGGAAARYNSALDMTLKALLNIK 512 (806)
T ss_pred c--------------ccCCCcchhhcccccchhhcccCcccccCCCccccccccccccccccceehhHHHHHHHHhhhhh
Confidence 6 77888888 666655511110 025688888 6677777776677788888889999999999
Q ss_pred HHHHHHhccCccccCCCCCCcHHHHHHHHHHHHhcccCCCCccccccchHHHHHHHhcccchHHHhhhhccchHHHHHHH
Q 037237 968 EFREEFMRRRQTIHNHIGDPCIVCALYDMFAALSTACEDNQVEVPSAPSSLRVALTTYSYDKNICKQAKMNDSSELLQAI 1047 (1267)
Q Consensus 968 ~fRe~fLs~~~~~h~~~~~~CV~CAL~~LFsal~~ss~~~~~e~~vsPs~Lr~aLs~i~~ds~~F~~g~QqDAhEfL~~L 1047 (1267)
.+.+.++...+..+. -.+.++|.++|.++..... ..+ .++...|...|..+.. .|. +-.||+++..++
T Consensus 513 i~~e~l~~~~q~~~~----~~vp~al~~~~~~s~~~~~--~~~-~~~S~lL~~ll~~l~~---~~~--~ss~~~~v~~ai 580 (806)
T KOG1887|consen 513 VLKEDLLKNRQPLVA----LQVPIALQNFFPASVSESI--KHE-GVYSELLSDLLLSLEE---VHN--ASSSAADVVVAI 580 (806)
T ss_pred hhhcccccccchhcc----ccCcchhhhcCCcchHHHH--Hhh-hhHHHHHHHHHhhhHH---Hhh--hcchhhHHHHHH
Confidence 999998887654333 3677899999887664322 222 4555555445544432 222 457999999999
Q ss_pred HHHHhhhccCCCCCcCCcccccCCCCCCCCCchheeeeeeEeEeEEecCCCCCcccccccccceeeccchhccccccCCC
Q 037237 1048 LESLHESFDTVNCDFQSQDEYEGSLDCSSAGCFVHIIFGMDHYEKVNCVKCSAKFGYRKYTSLFLTLNAYNLRNMKKTPR 1127 (1267)
Q Consensus 1048 Ld~LH~s~~~~~~~~es~e~~~~s~~~~~~~CIIHqLFGg~LrSqV~C~~Cg~~S~t~pf~~l~l~I~as~l~~~k~~~~ 1127 (1267)
|+.+|+ |+++...|+++++||+...+++.|..|+..++++.+++++++|+++.++..+++++
T Consensus 581 le~~~~------------------Wk~~er~~l~~~lf~l~~~e~~Sc~~cr~~~n~peqsS~~~~~~a~slr~~k~a~~ 642 (806)
T KOG1887|consen 581 LEFWQC------------------WKNPERESLVNRLFTLEEKERMSCSKCRRDLNYPEQSSYGIVIAADSLRQLKCAFQ 642 (806)
T ss_pred Hhcccc------------------cccHHHHHHHHhhhhhhhhhhccccccccCCCCcchhhhhhhccchhhhhHHHHhh
Confidence 999987 88888899999999999999999999999999988999999999999999999999
Q ss_pred CCcHHHHHHHhccCCcccC----CcCCCccceehccccCCcEEEEEeeccccchhhhhhhcccccceeeecccCCCCcch
Q 037237 1128 GSSFDVLLKQLVLNGLLNC----GACGQINYIHHTLWRLPHVFTIGMLRVCNTIEIEVIFGYSWLEFAVIGWQRDCESSE 1203 (1267)
Q Consensus 1128 ~~SF~~lLk~~~~~~~~~C----~~Cgk~~~kq~tI~rlP~VLtIhLKRFeh~~~~~~~f~~~~~~~~v~~w~~~~~s~~ 1203 (1267)
+.+|+++|+.+.|++++.| +|||+.+.++|+|.++|+|||| ++.|..+ ++..
T Consensus 643 n~~f~~ilk~i~m~~~m~cD~~~gGCgk~n~v~h~is~~P~vftI-----------------------vlewEk~-ETe~ 698 (806)
T KOG1887|consen 643 NITFEDILKNIRMNDKMLCDKETGGCGKANLVHHILSPCPPVFTI-----------------------VLEWEKS-ETEK 698 (806)
T ss_pred hhhHHHHHHHhhhhhhhcccccCCCCcchhhhhhhcCCCCCeeEe-----------------------eeehhcc-cchH
Confidence 9999999999999999999 7899999999999999999999 6678876 8999
Q ss_pred hhhhhhhcccccccCCcccC-CCCCCCeEEEEEEEEEecCCCcEEEEEEecCCCcEE--EecCCCC
Q 037237 1204 DVLSTLSALSAELDISNLFE-GYPPDNIYFLASMVCVSSDRQRYIIFVYNHMLEKYV--QSDGATD 1266 (1267)
Q Consensus 1204 dIs~tl~~~~~~LDLs~ly~-g~d~~~~Y~L~aVVcH~G~gGHYicfvr~~~~g~W~--~fDDs~V 1266 (1267)
+|+.|+.++.+++|++.+|+ |++|.++|+|++||++.+++++|+||++ ..++|+ +++|..+
T Consensus 699 eI~~T~~aL~teidis~~y~~g~ep~t~yrLVSmv~~~e~~~~~~C~Ay--e~Nrwvs~r~~~~~~ 762 (806)
T KOG1887|consen 699 EISETTKALATEIDISRLYREGLEPNTKYRLVSMVGNHEEGEEYICFAY--EPNRWVSLRHEDSQG 762 (806)
T ss_pred HHHHHHHHHHhhhhHHHHhhhccCcCceeEEEEEeeeccccceEEEeec--cCCcchhhHHHHHHh
Confidence 99999999999999999996 8899999999999999877899999999 568888 7777654
No 3
>KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-51 Score=478.46 Aligned_cols=273 Identities=19% Similarity=0.270 Sum_probs=227.7
Q ss_pred hhhhhhccCCCCCCcchHHHHHHHhhCcHHHHHHHhccCccccCCCCCCcHHHHHHHHHHHHhcccCCCCccccccchHH
Q 037237 939 AYLEYWRQFENGTTDSFVNMIVKSLWHLREFREEFMRRRQTIHNHIGDPCIVCALYDMFAALSTACEDNQVEVPSAPSSL 1018 (1267)
Q Consensus 939 ~~l~~gL~N~~GgNTCFLNSILQcL~H~p~fRe~fLs~~~~~h~~~~~~CV~CAL~~LFsal~~ss~~~~~e~~vsPs~L 1018 (1267)
...++||+|. |||||+|+|||||.|||||.+||++..|....+..+.|++|+|+.+......+.+ .+++|..|
T Consensus 105 ~~~~~GL~Nl--GNtCfaNsvlQcLt~T~PLv~yLls~~hs~~C~~~~~C~lc~~q~hi~~A~~~~g-----~pisP~~i 177 (545)
T KOG1865|consen 105 AAVGAGLQNL--GNTCFANSVLQCLTYTPPLVNYLLSREHSRSCHRAKFCMLCTFQAHITRALHNPG-----HPISPSQI 177 (545)
T ss_pred ccCCcceecC--CccHHHHHHHHHhcccHHHHHHHHHhhhhhhccccCeeeehHHHHHHHHHhcCCC-----CccChHHH
Confidence 5677999997 9999999999999999999999999887666566788999999998875554432 28999999
Q ss_pred HHHHHhcccchHHHhhhhccchHHHHHHHHHHHhhhccCCCCCcCCcccccCCCCCCCCCchheeeeeeEeEeEEecCCC
Q 037237 1019 RVALTTYSYDKNICKQAKMNDSSELLQAILESLHESFDTVNCDFQSQDEYEGSLDCSSAGCFVHIIFGMDHYEKVNCVKC 1098 (1267)
Q Consensus 1019 r~aLs~i~~ds~~F~~g~QqDAhEfL~~LLd~LH~s~~~~~~~~es~e~~~~s~~~~~~~CIIHqLFGg~LrSqV~C~~C 1098 (1267)
...|..|.. .|+.|.|+||||||+++||.|+..+.+..... ..-...+++||+||||+|+|+|+|..|
T Consensus 178 ~s~L~~I~~---~f~~grQEDAHEFLr~~vd~mqk~cL~g~~~~---------~~~sq~ttlv~~iFGG~LrS~vkC~~C 245 (545)
T KOG1865|consen 178 LSNLRNISA---HFGRGRQEDAHEFLRFTVDAMQKACLPGHKQV---------DPRSQDTTLVHQIFGGYLRSQIKCLHC 245 (545)
T ss_pred HHhhhhhcc---cccCCchhhHHHHHHHHHHHHHHhhcCCCccC---------CcccccceehhhhhccchhhceecccC
Confidence 999999987 89999999999999999999999986321110 111235789999999999999999999
Q ss_pred CCcccc-cccccceeeccchhccccccCCCCCcHHHHHHHh------ccCCcccCCcCCCccc--eehccccCCcEEEEE
Q 037237 1099 SAKFGY-RKYTSLFLTLNAYNLRNMKKTPRGSSFDVLLKQL------VLNGLLNCGACGQINY--IHHTLWRLPHVFTIG 1169 (1267)
Q Consensus 1099 g~~S~t-~pf~~l~l~I~as~l~~~k~~~~~~SF~~lLk~~------~~~~~~~C~~Cgk~~~--kq~tI~rlP~VLtIh 1169 (1267)
.++|++ ++++++.+.|.. ..++.+.|+.+ +++++|+|++|++++. ||++|+++|+|||||
T Consensus 246 ~~vS~tyE~~~dltvei~d-----------~~sl~~AL~qFt~~E~L~gen~Y~C~~Ck~~v~A~K~lti~raPnVLTi~ 314 (545)
T KOG1865|consen 246 KGVSDTYEPYLDLTLEIQD-----------ASSLQQALEQFTKPEKLDGENAYHCGRCKQKVPASKQLTIHRAPNVLTLH 314 (545)
T ss_pred CCcccccccccceEEEecc-----------chhHHHHHHHhhhHHhhCCccccccchhhhhCcccceeeeecCCceEEEe
Confidence 999998 799999887762 14566666554 3688999999999976 799999999999999
Q ss_pred eeccccchhhhhhhcccccceeeecccCCCCcchhhhhhhhcccccccCCcccCCC-CCCCeEEEEEEEEEec---CCCc
Q 037237 1170 MLRVCNTIEIEVIFGYSWLEFAVIGWQRDCESSEDVLSTLSALSAELDISNLFEGY-PPDNIYFLASMVCVSS---DRQR 1245 (1267)
Q Consensus 1170 LKRFeh~~~~~~~f~~~~~~~~v~~w~~~~~s~~dIs~tl~~~~~~LDLs~ly~g~-d~~~~Y~L~aVVcH~G---~gGH 1245 (1267)
||||.+ +|.++ .++. +.||+.|||+||+++- +-+++|.|||||+|.| ..||
T Consensus 315 LKRF~~------------------~~~gK-I~K~------I~fPE~LDl~PyMS~~~e~s~~Y~LYavlVH~g~~~~~GH 369 (545)
T KOG1865|consen 315 LKRFSN------------------GTGGK-ISKP------VSFPETLDLQPYMSQPNEGSTVYKLYAVLVHLGTSCHSGH 369 (545)
T ss_pred eehhcc------------------Ccccc-cccc------cCCcccccccccccCCCCCCceEEEEEEEEeccccccCCc
Confidence 999972 34443 3322 5799999999999743 4568999999999998 8899
Q ss_pred EEEEEEecCCCcEEEecCCCCC
Q 037237 1246 YIIFVYNHMLEKYVQSDGATDE 1267 (1267)
Q Consensus 1246 Yicfvr~~~~g~W~~fDDs~V~ 1267 (1267)
|+||||+. .|+||+|||+.|+
T Consensus 370 Y~cYvks~-~g~Wy~~DDS~V~ 390 (545)
T KOG1865|consen 370 YFCYVKSQ-NGQWYKMDDSEVT 390 (545)
T ss_pred eEEEEEcC-CCceEEccCceee
Confidence 99999975 8999999999984
No 4
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.7e-42 Score=394.64 Aligned_cols=263 Identities=16% Similarity=0.235 Sum_probs=204.6
Q ss_pred hccCCCCCCcchHHHHHHHhhCcHHHHHHHhccCccccCC---------CCCCcHHHHHHHHHHHHhcccCCCCcccccc
Q 037237 944 WRQFENGTTDSFVNMIVKSLWHLREFREEFMRRRQTIHNH---------IGDPCIVCALYDMFAALSTACEDNQVEVPSA 1014 (1267)
Q Consensus 944 gL~N~~GgNTCFLNSILQcL~H~p~fRe~fLs~~~~~h~~---------~~~~CV~CAL~~LFsal~~ss~~~~~e~~vs 1014 (1267)
||.|. ||||||||+||+|+|+|+||+++++.....+.. ....|++|+|+.+|.++..+.. . ++.
T Consensus 1 GL~Nl--GnTCY~NsvLQ~L~~~~~fr~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lf~~l~~~~~----~-~i~ 73 (324)
T cd02668 1 GLKNL--GATCYVNSFLQLWFMNLEFRKAVYECNSTEDAELKNMPPDKPHEPQTIIDQLQLIFAQLQFGNR----S-VVD 73 (324)
T ss_pred CcccC--CceeHHHHHHHHHHCCHHHHHHHHccCcccccccccccccCCcccchHHHHHHHHHHHHHhCCC----c-eEC
Confidence 78886 999999999999999999999998753221111 1235999999999999986542 2 799
Q ss_pred chHHHHHHHhcccchHHHhhhhccchHHHHHHHHHHHhhhccCCCCCcCCcccccCCCCCCCCCchheeeeeeEeEeEEe
Q 037237 1015 PSSLRVALTTYSYDKNICKQAKMNDSSELLQAILESLHESFDTVNCDFQSQDEYEGSLDCSSAGCFVHIIFGMDHYEKVN 1094 (1267)
Q Consensus 1015 Ps~Lr~aLs~i~~ds~~F~~g~QqDAhEfL~~LLd~LH~s~~~~~~~~es~e~~~~s~~~~~~~CIIHqLFGg~LrSqV~ 1094 (1267)
|..|..+|. |..+.|||||||+..||+.||..+.... .....++|+++|+|.+.++++
T Consensus 74 p~~f~~~l~--------~~~~~QqDa~EFl~~lLd~L~~~l~~~~--------------~~~~~~~i~~~F~G~~~~~~~ 131 (324)
T cd02668 74 PSGFVKALG--------LDTGQQQDAQEFSKLFLSLLEAKLSKSK--------------NPDLKNIVQDLFRGEYSYVTQ 131 (324)
T ss_pred hHHHHHHhC--------CCCccccCHHHHHHHHHHHHHHHHhhcc--------------CCcccchhhhhcceEEEEEEE
Confidence 999988873 3456899999999999999999775310 112357999999999999999
Q ss_pred cCCCCCcccc-cccccceeeccchhccccccCCCCCcHHHHHHHhc------cCCcccCCcCCCccc--eehccccCCcE
Q 037237 1095 CVKCSAKFGY-RKYTSLFLTLNAYNLRNMKKTPRGSSFDVLLKQLV------LNGLLNCGACGQINY--IHHTLWRLPHV 1165 (1267)
Q Consensus 1095 C~~Cg~~S~t-~pf~~l~l~I~as~l~~~k~~~~~~SF~~lLk~~~------~~~~~~C~~Cgk~~~--kq~tI~rlP~V 1165 (1267)
|..|++.+.+ ++|..+.++|+. ..+|.++|+.+. .+++|.|++|++... ++..|.++|+|
T Consensus 132 C~~C~~~s~~~e~f~~l~l~i~~-----------~~sl~~~L~~~~~~e~l~g~~~~~C~~C~~~~~a~k~~~i~~lP~i 200 (324)
T cd02668 132 CSKCGRESSLPSKFYELELQLKG-----------HKTLEECIDEFLKEEQLTGDNQYFCESCNSKTDATRRIRLTTLPPT 200 (324)
T ss_pred eCCCCCccccccccEEEEEEecc-----------cCCHHHHHHHhhCceecCCCccccCCCCCceeeeEEEEEecCCCCe
Confidence 9999999876 688777766653 247888887642 356799999998754 57789999999
Q ss_pred EEEEeeccccchhhhhhhcccccceeeecccCCCCcchhhhhhhhcccccccCCcccCCC-CCCCeEEEEEEEEEec---
Q 037237 1166 FTIGMLRVCNTIEIEVIFGYSWLEFAVIGWQRDCESSEDVLSTLSALSAELDISNLFEGY-PPDNIYFLASMVCVSS--- 1241 (1267)
Q Consensus 1166 LtIhLKRFeh~~~~~~~f~~~~~~~~v~~w~~~~~s~~dIs~tl~~~~~~LDLs~ly~g~-d~~~~Y~L~aVVcH~G--- 1241 (1267)
|+||||||+ |.........+ .+-+.||..|||++++... ..+..|+|+|||+|.|
T Consensus 201 Lii~LkRf~--------------------~d~~~~~~~Ki-~~~v~fp~~Ldl~~~~~~~~~~~~~Y~L~~vI~H~G~~~ 259 (324)
T cd02668 201 LNFQLLRFV--------------------FDRKTGAKKKL-NASISFPEILDMGEYLAESDEGSYVYELSGVLIHQGVSA 259 (324)
T ss_pred EEEEEEcce--------------------eecccCcceeC-CcEEECCCeEechhhcccccCCCcEEEEEEEEEEcCCCC
Confidence 999999996 22211111122 2335799999999876543 3467999999999998
Q ss_pred CCCcEEEEEEecCCCcEEEecCCCCC
Q 037237 1242 DRQRYIIFVYNHMLEKYVQSDGATDE 1267 (1267)
Q Consensus 1242 ~gGHYicfvr~~~~g~W~~fDDs~V~ 1267 (1267)
++|||+||+|+..+|+||.|||+.|+
T Consensus 260 ~~GHY~~~~k~~~~~~W~~fdD~~V~ 285 (324)
T cd02668 260 YSGHYIAHIKDEQTGEWYKFNDEDVE 285 (324)
T ss_pred CCEeeEEEEECCCCCcEEEEECCceE
Confidence 68999999997667999999999985
No 5
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=6.7e-42 Score=388.36 Aligned_cols=284 Identities=19% Similarity=0.289 Sum_probs=215.3
Q ss_pred hhccCCCCCCcchHHHHHHHhhCcHHHHHHHhccCccc--cCCCCCCcHHHHHHHHHHHHhcccCCCCccccccchHHHH
Q 037237 943 YWRQFENGTTDSFVNMIVKSLWHLREFREEFMRRRQTI--HNHIGDPCIVCALYDMFAALSTACEDNQVEVPSAPSSLRV 1020 (1267)
Q Consensus 943 ~gL~N~~GgNTCFLNSILQcL~H~p~fRe~fLs~~~~~--h~~~~~~CV~CAL~~LFsal~~ss~~~~~e~~vsPs~Lr~ 1020 (1267)
.||.|. ||||||||+||||+|+|+||+++++..+.. ..+....|+.|+|..+|..+.... ... ++.|..|..
T Consensus 1 rGl~N~--gntCY~NsvLQ~L~~~~~f~~~ll~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~---~~~-~~~~~~~l~ 74 (328)
T cd02660 1 RGLINL--GATCFMNVILQALLHNPLLRNYFLSDRHSCTCLSCSPNSCLSCAMDEIFQEFYYSG---DRS-PYGPINLLY 74 (328)
T ss_pred CCcccc--CcchHHHHHHHHHhcCHHHHHHHhcCccccccccCCccccHHHHHHHHHHHHhcCC---CCC-CcCHHHHHH
Confidence 489997 899999999999999999999999865332 223345699999999999995322 122 689999999
Q ss_pred HHHhcccchHHHhhhhccchHHHHHHHHHHHhhhccCCCCCcCCcccccCCCCCCCCCchheeeeeeEeEeEEecCCCCC
Q 037237 1021 ALTTYSYDKNICKQAKMNDSSELLQAILESLHESFDTVNCDFQSQDEYEGSLDCSSAGCFVHIIFGMDHYEKVNCVKCSA 1100 (1267)
Q Consensus 1021 aLs~i~~ds~~F~~g~QqDAhEfL~~LLd~LH~s~~~~~~~~es~e~~~~s~~~~~~~CIIHqLFGg~LrSqV~C~~Cg~ 1100 (1267)
+++...+ .|..+.|||||||+.+||+.||..+...... ......+.|+|+++|+|.+.++++|..|++
T Consensus 75 ~~~~~~~---~f~~~~QqDa~Efl~~ll~~l~~~~~~~~~~---------~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~ 142 (328)
T cd02660 75 LSWKHSR---NLAGYSQQDAHEFFQFLLDQLHTHYGGDKNE---------ANDESHCNCIIHQTFSGSLQSSVTCQRCGG 142 (328)
T ss_pred HHHhhch---hhcccccccHHHHHHHHHHHHHHHhhccccc---------ccccccCCceeEEecccEEEeeeEcCCCCC
Confidence 9988766 7888899999999999999999987542100 011124578999999999999999999999
Q ss_pred cccc-cccccceeeccchhccccc----cCCCCCcHHHHHHHhc----c-CCcccCCcCCCccc--eehccccCCcEEEE
Q 037237 1101 KFGY-RKYTSLFLTLNAYNLRNMK----KTPRGSSFDVLLKQLV----L-NGLLNCGACGQINY--IHHTLWRLPHVFTI 1168 (1267)
Q Consensus 1101 ~S~t-~pf~~l~l~I~as~l~~~k----~~~~~~SF~~lLk~~~----~-~~~~~C~~Cgk~~~--kq~tI~rlP~VLtI 1168 (1267)
.+.. ++|..+.++|+........ ......++.++|+.+. . +..|.|++|++... ++..|.++|+||+|
T Consensus 143 ~s~~~e~f~~lsl~i~~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~~~~~~~~C~~C~~~~~~~~~~~i~~lP~~Lii 222 (328)
T cd02660 143 VSTTVDPFLDLSLDIPNKSTPSWALGESGVSGTPTLSDCLDRFTRPEKLGDFAYKCSGCGSTQEATKQLSIKKLPPVLCF 222 (328)
T ss_pred ccceecccceeeeeccccccccccccccCCCCCCCHHHHHHHhcCccccCCCCccCCCCCCccceEEEEEecCCCceeEE
Confidence 9987 7888888887653221100 0012368999998753 1 22389999998854 57789999999999
Q ss_pred EeeccccchhhhhhhcccccceeeecccCCCCcchhhhhhhhcccccccCCcccCC----------CCCCCeEEEEEEEE
Q 037237 1169 GMLRVCNTIEIEVIFGYSWLEFAVIGWQRDCESSEDVLSTLSALSAELDISNLFEG----------YPPDNIYFLASMVC 1238 (1267)
Q Consensus 1169 hLKRFeh~~~~~~~f~~~~~~~~v~~w~~~~~s~~dIs~tl~~~~~~LDLs~ly~g----------~d~~~~Y~L~aVVc 1238 (1267)
|||||+.. . .|... +. .+.+.||..|||+++... ...+..|+|+|||+
T Consensus 223 ~lkRf~~~---------------~-~~~~~---K~---~~~v~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~Y~L~avi~ 280 (328)
T cd02660 223 QLKRFEHS---------------L-NKTSR---KI---DTYVQFPLELNMTPYTSSSIGDTQDSNSLDPDYTYDLFAVVV 280 (328)
T ss_pred EEEeEEec---------------C-CCCCc---CC---CcEEeCCCEechhhhcccccccccccccCCCCceEEEEEEEE
Confidence 99999721 0 02211 11 123578889999986542 12457999999999
Q ss_pred Eec--CCCcEEEEEEecCCCcEEEecCCCCC
Q 037237 1239 VSS--DRQRYIIFVYNHMLEKYVQSDGATDE 1267 (1267)
Q Consensus 1239 H~G--~gGHYicfvr~~~~g~W~~fDDs~V~ 1267 (1267)
|.| ++|||+||+|.. .++||.|||+.|+
T Consensus 281 H~G~~~~GHY~~~~~~~-~~~W~~~nD~~V~ 310 (328)
T cd02660 281 HKGTLDTGHYTAYCRQG-DGQWFKFDDAMIT 310 (328)
T ss_pred eeccCCCCcEEEEEECC-CCcEEEEECCeeE
Confidence 999 889999999954 4999999999984
No 6
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.1e-41 Score=380.07 Aligned_cols=273 Identities=19% Similarity=0.264 Sum_probs=213.7
Q ss_pred hhhccCCCCCCcchHHHHHHHhhCcHHHHHHHhccCccccCCCCCCcHHHHHHHHHHHHhcccCCCCccccccchHHHHH
Q 037237 942 EYWRQFENGTTDSFVNMIVKSLWHLREFREEFMRRRQTIHNHIGDPCIVCALYDMFAALSTACEDNQVEVPSAPSSLRVA 1021 (1267)
Q Consensus 942 ~~gL~N~~GgNTCFLNSILQcL~H~p~fRe~fLs~~~~~h~~~~~~CV~CAL~~LFsal~~ss~~~~~e~~vsPs~Lr~a 1021 (1267)
++||.|. ||||||||+||+|+|+|+||+++++..+..+.+..+.|+.|+|+.+|.++..+.. . .+.|..|+.+
T Consensus 1 ~~GL~N~--gntCY~NsvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~-~~~p~~~~~~ 73 (304)
T cd02661 1 GAGLQNL--GNTCFLNSVLQCLTHTPPLANYLLSREHSKDCCNEGFCMMCALEAHVERALASSG----P-GSAPRIFSSN 73 (304)
T ss_pred CCCcccc--CchhHHHHHHHHhhCCHHHHHHHhcchhhhhccCCcchHHHHHHHHHHHHHhCCC----C-ccChHHHHHH
Confidence 4799997 8999999999999999999999987554444455667999999999998875432 2 7899999999
Q ss_pred HHhcccchHHHhhhhccchHHHHHHHHHHHhhhccCCCCCcCCcccccCCCCCCCCCchheeeeeeEeEeEEecCCCCCc
Q 037237 1022 LTTYSYDKNICKQAKMNDSSELLQAILESLHESFDTVNCDFQSQDEYEGSLDCSSAGCFVHIIFGMDHYEKVNCVKCSAK 1101 (1267)
Q Consensus 1022 Ls~i~~ds~~F~~g~QqDAhEfL~~LLd~LH~s~~~~~~~~es~e~~~~s~~~~~~~CIIHqLFGg~LrSqV~C~~Cg~~ 1101 (1267)
|..+.+ .|..+.||||+||+..+|+.||.++......... ........++++++|+|.+.++++|..|+..
T Consensus 74 l~~~~~---~f~~~~qqDa~Efl~~ll~~l~~~~~~~~~~~~~------~~~~~~~~~~i~~~F~g~~~~~~~C~~C~~~ 144 (304)
T cd02661 74 LKQISK---HFRIGRQEDAHEFLRYLLDAMQKACLDRFKKLKA------VDPSSQETTLVQQIFGGYLRSQVKCLNCKHV 144 (304)
T ss_pred HHHHHH---hhcCcchhhHHHHHHHHHHHHHHHHhhhcccccc------cCccccCCChhhhcCCcEEeeeEEeCCCCCC
Confidence 998866 8999999999999999999999986542100000 0011234689999999999999999999999
Q ss_pred ccc-cccccceeeccchhccccccCCCCCcHHHHHHHhc------cCCcccCCcCCCccc--eehccccCCcEEEEEeec
Q 037237 1102 FGY-RKYTSLFLTLNAYNLRNMKKTPRGSSFDVLLKQLV------LNGLLNCGACGQINY--IHHTLWRLPHVFTIGMLR 1172 (1267)
Q Consensus 1102 S~t-~pf~~l~l~I~as~l~~~k~~~~~~SF~~lLk~~~------~~~~~~C~~Cgk~~~--kq~tI~rlP~VLtIhLKR 1172 (1267)
+.. ++|..+.++|+.. .++.++|+.+. .++.|.|+.|++... ++..|.++|+||+|||||
T Consensus 145 s~~~e~~~~l~l~i~~~-----------~~l~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~~P~iL~i~l~R 213 (304)
T cd02661 145 SNTYDPFLDLSLDIKGA-----------DSLEDALEQFTKPEQLDGENKYKCERCKKKVKASKQLTIHRAPNVLTIHLKR 213 (304)
T ss_pred cCccccceeeeeecCCC-----------CcHHHHHHHhcCceeeCCCCCeeCCCCCCccceEEEEEEecCCcEEEEEEec
Confidence 987 5777777766531 46777776642 345689999998764 567799999999999999
Q ss_pred cccchhhhhhhcccccceeeecccCCCCcchhhhhhhhcccccccCCcccCC-CCCCCeEEEEEEEEEec---CCCcEEE
Q 037237 1173 VCNTIEIEVIFGYSWLEFAVIGWQRDCESSEDVLSTLSALSAELDISNLFEG-YPPDNIYFLASMVCVSS---DRQRYII 1248 (1267)
Q Consensus 1173 Feh~~~~~~~f~~~~~~~~v~~w~~~~~s~~dIs~tl~~~~~~LDLs~ly~g-~d~~~~Y~L~aVVcH~G---~gGHYic 1248 (1267)
|.. +... .+ .+-+.||..|||.++... .....+|+|+|||+|.| ++|||+|
T Consensus 214 f~~-------------------~~~~-----Ki-~~~v~f~~~L~l~~~~~~~~~~~~~Y~L~~vi~H~G~~~~~GHY~~ 268 (304)
T cd02661 214 FSN-------------------FRGG-----KI-NKQISFPETLDLSPYMSQPNDGPLKYKLYAVLVHSGFSPHSGHYYC 268 (304)
T ss_pred ccc-------------------CCcc-----cc-CCeEecCCeechhhccccCCCCCceeeEEEEEEECCCCCCCcCCEE
Confidence 961 1111 12 122468889999987654 34568999999999998 7799999
Q ss_pred EEEecCCCcEEEecCCCCC
Q 037237 1249 FVYNHMLEKYVQSDGATDE 1267 (1267)
Q Consensus 1249 fvr~~~~g~W~~fDDs~V~ 1267 (1267)
|+|++ +|+||+|||+.|+
T Consensus 269 ~~~~~-~~~W~~~nD~~V~ 286 (304)
T cd02661 269 YVKSS-NGKWYNMDDSKVS 286 (304)
T ss_pred EEECC-CCCEEEEeCCeeE
Confidence 99963 7999999999984
No 7
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.9e-41 Score=381.23 Aligned_cols=265 Identities=18% Similarity=0.248 Sum_probs=205.7
Q ss_pred hccCCCCCCcchHHHHHHHhhCcHHHHHHHhccCcccc-CCCCCCcHHHHHHHHHHHHhcccCCCCccccccchHHHHHH
Q 037237 944 WRQFENGTTDSFVNMIVKSLWHLREFREEFMRRRQTIH-NHIGDPCIVCALYDMFAALSTACEDNQVEVPSAPSSLRVAL 1022 (1267)
Q Consensus 944 gL~N~~GgNTCFLNSILQcL~H~p~fRe~fLs~~~~~h-~~~~~~CV~CAL~~LFsal~~ss~~~~~e~~vsPs~Lr~aL 1022 (1267)
||.|. ||||||||+||+|+|+|+||+++++...... .+....|++|+|+.+|.++..+. . ++.|..|...|
T Consensus 1 Gl~N~--GntCy~NsvLQ~L~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~-----~-~i~p~~~~~~l 72 (305)
T cd02657 1 GLTNL--GNTCYLNSTLQCLRSVPELRDALKNYNPARRGANQSSDNLTNALRDLFDTMDKKQ-----E-PVPPIEFLQLL 72 (305)
T ss_pred Ccccc--cchhHHHHHHHHHhCCHHHHHHHHhccccccccccchhHHHHHHHHHHHHHHhCC-----C-cCCcHHHHHHH
Confidence 68886 9999999999999999999999987543211 23345599999999999998542 2 69999999999
Q ss_pred HhcccchHHHh------hhhccchHHHHHHHHHHHhhhccCCCCCcCCcccccCCCCCCCCCchheeeeeeEeEeEEecC
Q 037237 1023 TTYSYDKNICK------QAKMNDSSELLQAILESLHESFDTVNCDFQSQDEYEGSLDCSSAGCFVHIIFGMDHYEKVNCV 1096 (1267)
Q Consensus 1023 s~i~~ds~~F~------~g~QqDAhEfL~~LLd~LH~s~~~~~~~~es~e~~~~s~~~~~~~CIIHqLFGg~LrSqV~C~ 1096 (1267)
....+ .|. .++|||||||+..+|+.||..+... ....++|+++|+|.+.++++|.
T Consensus 73 ~~~~~---~f~~~~~~~~~~QqDA~EFl~~lld~L~~~~~~~----------------~~~~~~i~~~F~g~~~~~~~C~ 133 (305)
T cd02657 73 RMAFP---QFAEKQNQGGYAQQDAEECWSQLLSVLSQKLPGA----------------GSKGSFIDQLFGIELETKMKCT 133 (305)
T ss_pred HHHCc---CcccccCCCCccccCHHHHHHHHHHHHHHHhccc----------------CCCCcHHHHhhceEEEEEEEcC
Confidence 98877 553 3479999999999999999976531 1236799999999999999999
Q ss_pred CCC-Ccccc-cccccceeeccchhccccccCCCCCcHHHHHHHhc-cCCcccCCcCCCccc--eehccccCCcEEEEEee
Q 037237 1097 KCS-AKFGY-RKYTSLFLTLNAYNLRNMKKTPRGSSFDVLLKQLV-LNGLLNCGACGQINY--IHHTLWRLPHVFTIGML 1171 (1267)
Q Consensus 1097 ~Cg-~~S~t-~pf~~l~l~I~as~l~~~k~~~~~~SF~~lLk~~~-~~~~~~C~~Cgk~~~--kq~tI~rlP~VLtIhLK 1171 (1267)
.|+ ..+.+ ++|..++++|+... ...++.++|.... ......|+.|+.... ++..|.++|+||+||||
T Consensus 134 ~C~~~~~~~~e~f~~Lsl~i~~~~--------~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~k~~~i~~lP~vLii~Lk 205 (305)
T cd02657 134 ESPDEEEVSTESEYKLQCHISITT--------EVNYLQDGLKKGLEEEIEKHSPTLGRDAIYTKTSRISRLPKYLTVQFV 205 (305)
T ss_pred CCCCCCccccccceEEEeecCCCc--------ccccHHHHHHHhhhhhhhhcCcccCCCceEEEEEEeccCCcEEEEEEE
Confidence 999 67765 78888888876532 1245777776532 222357888886654 57789999999999999
Q ss_pred ccccchhhhhhhcccccceeeecccCCCCcchhhhhhhhcccccccCCcccCCCCCCCeEEEEEEEEEec---CCCcEEE
Q 037237 1172 RVCNTIEIEVIFGYSWLEFAVIGWQRDCESSEDVLSTLSALSAELDISNLFEGYPPDNIYFLASMVCVSS---DRQRYII 1248 (1267)
Q Consensus 1172 RFeh~~~~~~~f~~~~~~~~v~~w~~~~~s~~dIs~tl~~~~~~LDLs~ly~g~d~~~~Y~L~aVVcH~G---~gGHYic 1248 (1267)
||+ |.........+ .+.+.||..|||+++.. .+..|+|+|||+|.| ++|||+|
T Consensus 206 RF~--------------------~~~~~~~~~Ki-~~~v~fP~~Ldl~~~~~---~~~~Y~L~~vI~H~G~~~~~GHY~~ 261 (305)
T cd02657 206 RFF--------------------WKRDIQKKAKI-LRKVKFPFELDLYELCT---PSGYYELVAVITHQGRSADSGHYVA 261 (305)
T ss_pred CCc--------------------cccccCceeec-CcEEECCceEecccccC---CCCcEEEEEEEEecCCCCCCcEEEE
Confidence 996 22221122222 23367999999998664 457999999999998 6899999
Q ss_pred EEEecCCCcEEEecCCCCC
Q 037237 1249 FVYNHMLEKYVQSDGATDE 1267 (1267)
Q Consensus 1249 fvr~~~~g~W~~fDDs~V~ 1267 (1267)
|+|.+..++||.|||+.|+
T Consensus 262 ~~~~~~~~~W~~fdD~~V~ 280 (305)
T cd02657 262 WVRRKNDGKWIKFDDDKVS 280 (305)
T ss_pred EEEcCCCCeEEEEECCceE
Confidence 9997655999999999985
No 8
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.7e-41 Score=382.69 Aligned_cols=261 Identities=16% Similarity=0.269 Sum_probs=198.9
Q ss_pred hccCCCCCCcchHHHHHHHhhCcHHHHHHHhccCccccCCCCCCcHHHHHHHHHHHHhcccCCCCccccccchHHHHHHH
Q 037237 944 WRQFENGTTDSFVNMIVKSLWHLREFREEFMRRRQTIHNHIGDPCIVCALYDMFAALSTACEDNQVEVPSAPSSLRVALT 1023 (1267)
Q Consensus 944 gL~N~~GgNTCFLNSILQcL~H~p~fRe~fLs~~~~~h~~~~~~CV~CAL~~LFsal~~ss~~~~~e~~vsPs~Lr~aLs 1023 (1267)
||.|. |||||||||||||+| .|++|+|+.+|..+..+.. ..+ .++|..|..+|.
T Consensus 1 Gl~Nl--GnTCY~NsvLQ~L~~---------------------~~l~~~L~~lf~~l~~~~~--~~~-~isP~~f~~~l~ 54 (300)
T cd02663 1 GLENF--GNTCYCNSVLQALYF---------------------ENLLTCLKDLFESISEQKK--RTG-VISPKKFITRLK 54 (300)
T ss_pred CccCC--CcceehhHHHHHhhh---------------------HHHHHHHHHHHHHHHhCCC--CCe-eECHHHHHHHHH
Confidence 78896 999999999999998 3899999999999986432 233 689999999998
Q ss_pred hcccchHHHhhhhccchHHHHHHHHHHHhhhccCCCCCcCCcccccCCCCCCCCCchheeeeeeEeEeEEecCCCCCccc
Q 037237 1024 TYSYDKNICKQAKMNDSSELLQAILESLHESFDTVNCDFQSQDEYEGSLDCSSAGCFVHIIFGMDHYEKVNCVKCSAKFG 1103 (1267)
Q Consensus 1024 ~i~~ds~~F~~g~QqDAhEfL~~LLd~LH~s~~~~~~~~es~e~~~~s~~~~~~~CIIHqLFGg~LrSqV~C~~Cg~~S~ 1103 (1267)
...+ .|..+.||||||||..|||.||..+...........+...........++|+++|+|.++++++|..|++.|.
T Consensus 55 ~~~~---~f~~~~QqDA~EFl~~lLd~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~F~G~~~~~~~C~~C~~~s~ 131 (300)
T cd02663 55 RENE---LFDNYMHQDAHEFLNFLLNEIAEILDAERKAEKANRKLNNNNNAEPQPTWVHEIFQGILTNETRCLTCETVSS 131 (300)
T ss_pred hhcC---CCCCCccccHHHHHHHHHHHHHHHHHHHhhcccccccccccccCCcCCCChhhhCceEEEeeEEeCCCCCCcc
Confidence 8877 7989999999999999999999988642100000000000111223568999999999999999999999998
Q ss_pred c-cccccceeeccchhccccccCCCCCcHHHHHHHhc------cCCcccCCcCCCccc--eehccccCCcEEEEEeeccc
Q 037237 1104 Y-RKYTSLFLTLNAYNLRNMKKTPRGSSFDVLLKQLV------LNGLLNCGACGQINY--IHHTLWRLPHVFTIGMLRVC 1174 (1267)
Q Consensus 1104 t-~pf~~l~l~I~as~l~~~k~~~~~~SF~~lLk~~~------~~~~~~C~~Cgk~~~--kq~tI~rlP~VLtIhLKRFe 1174 (1267)
+ ++|.++.++|+. ..+++++|+.+. .+++|.|++|++.+. ++..|.++|+||+||||||+
T Consensus 132 ~~e~f~~Lsl~i~~-----------~~sl~~~L~~~~~~E~l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~ 200 (300)
T cd02663 132 RDETFLDLSIDVEQ-----------NTSITSCLRQFSATETLCGRNKFYCDECCSLQEAEKRMKIKKLPKILALHLKRFK 200 (300)
T ss_pred ccceeEEeccCCCC-----------cCCHHHHHHHhhcccccCCCCcEECCCCCCceeEEEEEEeccCCceeEEEEEeEE
Confidence 7 688777766653 257888887653 346899999998764 67789999999999999996
Q ss_pred cchhhhhhhcccccceeeecccCCCCcchhhhhhhhcccccccCCcccCC-CCCCCeEEEEEEEEEec---CCCcEEEEE
Q 037237 1175 NTIEIEVIFGYSWLEFAVIGWQRDCESSEDVLSTLSALSAELDISNLFEG-YPPDNIYFLASMVCVSS---DRQRYIIFV 1250 (1267)
Q Consensus 1175 h~~~~~~~f~~~~~~~~v~~w~~~~~s~~dIs~tl~~~~~~LDLs~ly~g-~d~~~~Y~L~aVVcH~G---~gGHYicfv 1250 (1267)
|.........+ .+-+.||..|||.++.+. ..++..|+|+|||+|.| ++|||+||+
T Consensus 201 --------------------~~~~~~~~~Ki-~~~v~fp~~L~~~~~~~~~~~~~~~Y~L~~vi~H~G~~~~~GHY~a~~ 259 (300)
T cd02663 201 --------------------YDEQLNRYIKL-FYRVVFPLELRLFNTTDDAENPDRLYELVAVVVHIGGGPNHGHYVSIV 259 (300)
T ss_pred --------------------eecccCCceec-CceEecCcEEeccccccccCCCCeEEEEEEEEEEecCCCCCCceEEEE
Confidence 22111111112 233678888888864322 23457999999999998 689999999
Q ss_pred EecCCCcEEEecCCCCC
Q 037237 1251 YNHMLEKYVQSDGATDE 1267 (1267)
Q Consensus 1251 r~~~~g~W~~fDDs~V~ 1267 (1267)
|+ +|+||.|||+.|+
T Consensus 260 k~--~~~W~~fdD~~V~ 274 (300)
T cd02663 260 KS--HGGWLLFDDETVE 274 (300)
T ss_pred EC--CCcEEEEcCCceE
Confidence 94 8999999999985
No 9
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=6.3e-41 Score=397.24 Aligned_cols=274 Identities=15% Similarity=0.159 Sum_probs=209.9
Q ss_pred hhccCCCCCCcchHHHHHHHhhCcHHHHHHHhccCccccCCCCCCcHHHHHHHHHHHHhcccCCCCccccccchHHHHHH
Q 037237 943 YWRQFENGTTDSFVNMIVKSLWHLREFREEFMRRRQTIHNHIGDPCIVCALYDMFAALSTACEDNQVEVPSAPSSLRVAL 1022 (1267)
Q Consensus 943 ~gL~N~~GgNTCFLNSILQcL~H~p~fRe~fLs~~~~~h~~~~~~CV~CAL~~LFsal~~ss~~~~~e~~vsPs~Lr~aL 1022 (1267)
.||.|. |||||||||||||.|+|+||++|+...+.........|++|+|..+|..++... .... +++|..|..++
T Consensus 120 vGL~Nl--GnTCYmNsvLQ~L~~~p~lr~~~l~~~~~~~~~~~~~~l~~~l~~l~~kl~~~~--~~~~-~isP~~fl~~l 194 (440)
T cd02669 120 VGLNNI--KNNDYANVIIQALSHVKPIRNFFLLYENYENIKDRKSELVKRLSELIRKIWNPR--NFKG-HVSPHELLQAV 194 (440)
T ss_pred cCccCC--CCchHHHHHHHHHHCCHHHHHHHhhccccccccCCCcHHHHHHHHHHHHHhccc--cCCC-ccCHHHHHHHH
Confidence 799997 999999999999999999999999865322111234589999999999987532 1123 79999999999
Q ss_pred HhcccchHHHhhhhccchHHHHHHHHHHHhhhccCCCCCcCCcccccCCCCCCCCCchheeeeeeEeEeEEecCCCC---
Q 037237 1023 TTYSYDKNICKQAKMNDSSELLQAILESLHESFDTVNCDFQSQDEYEGSLDCSSAGCFVHIIFGMDHYEKVNCVKCS--- 1099 (1267)
Q Consensus 1023 s~i~~ds~~F~~g~QqDAhEfL~~LLd~LH~s~~~~~~~~es~e~~~~s~~~~~~~CIIHqLFGg~LrSqV~C~~Cg--- 1099 (1267)
....+ ..|..+.||||||||.+||+.||+.+.... ..+.|+||++|+|+++++++|..|.
T Consensus 195 ~~~~~--~~f~~~~QqDA~EFl~~LLd~L~~~l~~~~---------------~~~~~ii~~~F~G~l~~~~~c~~~~~~~ 257 (440)
T cd02669 195 SKVSK--KKFSITEQSDPVEFLSWLLNTLHKDLGGSK---------------KPNSSIIHDCFQGKVQIETQKIKPHAEE 257 (440)
T ss_pred Hhhcc--cccCCcccCCHHHHHHHHHHHHHHHhccCC---------------CCCCCcceeccCceEEEEEEeecccccc
Confidence 87643 368888999999999999999999875421 1357899999999999999987654
Q ss_pred -----------C-cccc-cccccceeeccchhccc---cccCCCCCcHHHHHHHhccCCcccCCcCCCccc--eehcccc
Q 037237 1100 -----------A-KFGY-RKYTSLFLTLNAYNLRN---MKKTPRGSSFDVLLKQLVLNGLLNCGACGQINY--IHHTLWR 1161 (1267)
Q Consensus 1100 -----------~-~S~t-~pf~~l~l~I~as~l~~---~k~~~~~~SF~~lLk~~~~~~~~~C~~Cgk~~~--kq~tI~r 1161 (1267)
+ +|.+ +||.+++++|+...+.. .....+..+++++|+ +|.|..|...+. +++.|++
T Consensus 258 ~~~~~~~~~c~~~~s~~~~pF~~LsLdip~~~~~~~~~~~~~l~~~~l~e~L~------ky~~~~c~~~~~a~k~~~I~~ 331 (440)
T cd02669 258 EGSKDKFFKDSRVKKTSVSPFLLLTLDLPPPPLFKDGNEENIIPQVPLKQLLK------KYDGKTETELKDSLKRYLISR 331 (440)
T ss_pred cccccccccccccceeeeccceEEEecCCCCccccccccccccCcccHHHHHH------hcCCccceecccceEEEEEee
Confidence 2 3333 69999998887643211 111233467888875 477888876543 6888999
Q ss_pred CCcEEEEEeeccccchhhhhhhcccccceeeecccCCCCcchhhhhhhhccccc-ccCCcccC----CCCCCCeEEEEEE
Q 037237 1162 LPHVFTIGMLRVCNTIEIEVIFGYSWLEFAVIGWQRDCESSEDVLSTLSALSAE-LDISNLFE----GYPPDNIYFLASM 1236 (1267)
Q Consensus 1162 lP~VLtIhLKRFeh~~~~~~~f~~~~~~~~v~~w~~~~~s~~dIs~tl~~~~~~-LDLs~ly~----g~d~~~~Y~L~aV 1236 (1267)
+|+||+||||||++. .....+ + .+.+.||.. |||+++.. +..++..|+|+||
T Consensus 332 LP~vLiihLKRF~~~--------------------~~~~~K--~-~t~V~FP~~~LDm~~y~~~~~~~~~~~~~Y~L~av 388 (440)
T cd02669 332 LPKYLIFHIKRFSKN--------------------NFFKEK--N-PTIVNFPIKNLDLSDYVHFDKPSLNLSTKYNLVAN 388 (440)
T ss_pred CCcEEEEEEecccCC--------------------CCcccc--C-CCEEECCCCccchhhhhCccccccCCCceEEEEEE
Confidence 999999999999842 111111 2 455789986 79999764 2235689999999
Q ss_pred EEEec---CCCcEEEEEEecCCCcEEEecCCCCC
Q 037237 1237 VCVSS---DRQRYIIFVYNHMLEKYVQSDGATDE 1267 (1267)
Q Consensus 1237 VcH~G---~gGHYicfvr~~~~g~W~~fDDs~V~ 1267 (1267)
|+|.| ++|||+||+|+..+|+||.|||+.|+
T Consensus 389 I~H~G~~~~sGHY~a~v~~~~~~~W~~fdD~~V~ 422 (440)
T cd02669 389 IVHEGTPQEDGTWRVQLRHKSTNKWFEIQDLNVK 422 (440)
T ss_pred EEEeccCCCCeeEEEEEEcCCCCeEEEEECCeee
Confidence 99998 78999999997668999999999985
No 10
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.5e-40 Score=377.85 Aligned_cols=249 Identities=16% Similarity=0.277 Sum_probs=190.1
Q ss_pred hccCCCCCCcchHHHHHHHhhCcHHHHHHHhccCccccCCCCCCcHHHHHHHHHHHHhcccCCCCccccccchH-HHHHH
Q 037237 944 WRQFENGTTDSFVNMIVKSLWHLREFREEFMRRRQTIHNHIGDPCIVCALYDMFAALSTACEDNQVEVPSAPSS-LRVAL 1022 (1267)
Q Consensus 944 gL~N~~GgNTCFLNSILQcL~H~p~fRe~fLs~~~~~h~~~~~~CV~CAL~~LFsal~~ss~~~~~e~~vsPs~-Lr~aL 1022 (1267)
||.|. ||||||||+||||.|+|+||+.+++.... ......++.++|+.+|..+..... . ++.|.. +..++
T Consensus 1 GL~Nl--GnTCY~NS~LQ~L~~~~~fr~~ll~~~~~--~~~~~~~~~~~L~~lf~~l~~~~~----~-~~~~~~~~l~~~ 71 (327)
T cd02664 1 GLINL--GNTCYMNSVLQALFMAKDFRRQVLSLNLP--RLGDSQSVMKKLQLLQAHLMHTQR----R-AEAPPDYFLEAS 71 (327)
T ss_pred CCcCC--cccHHHHHHHHHHHCcHHHHHHHHcCCcc--ccCCcchHHHHHHHHHHHHhhcCC----c-ccCCHHHHHHHh
Confidence 78896 99999999999999999999999986421 123455899999999999885432 2 567765 44443
Q ss_pred HhcccchHHHhhhhccchHHHHHHHHHHHhhhccCCCCCcCCcccccCCCCCCCCCchheeeeeeEeEeEEecCCCCCcc
Q 037237 1023 TTYSYDKNICKQAKMNDSSELLQAILESLHESFDTVNCDFQSQDEYEGSLDCSSAGCFVHIIFGMDHYEKVNCVKCSAKF 1102 (1267)
Q Consensus 1023 s~i~~ds~~F~~g~QqDAhEfL~~LLd~LH~s~~~~~~~~es~e~~~~s~~~~~~~CIIHqLFGg~LrSqV~C~~Cg~~S 1102 (1267)
. .+ .|..+.|||||||+..||+.||. +|.++|+|.+.++++|..|++.|
T Consensus 72 ~--~~---~f~~~~QqDa~EFl~~lLd~l~~--------------------------~i~~~F~G~~~~~i~C~~C~~~s 120 (327)
T cd02664 72 R--PP---WFTPGSQQDCSEYLRYLLDRLHT--------------------------LIEKMFGGKLSTTIRCLNCNSTS 120 (327)
T ss_pred c--cc---ccCCCCcCCHHHHHHHHHHHHHH--------------------------HHHhhCcEEeEeEEEcCCCCCEe
Confidence 2 23 68888999999999999999982 67899999999999999999998
Q ss_pred cc-cccccceeeccchhccccccCCCCCcHHHHHHHhc------cCCcccCCcCCCccc--eehccccCCcEEEEEeecc
Q 037237 1103 GY-RKYTSLFLTLNAYNLRNMKKTPRGSSFDVLLKQLV------LNGLLNCGACGQINY--IHHTLWRLPHVFTIGMLRV 1173 (1267)
Q Consensus 1103 ~t-~pf~~l~l~I~as~l~~~k~~~~~~SF~~lLk~~~------~~~~~~C~~Cgk~~~--kq~tI~rlP~VLtIhLKRF 1173 (1267)
.+ ++|..+.+.|+ ++.++|+.+. .+++|.|++|++... ++..|.++|+||+||||||
T Consensus 121 ~~~e~f~~l~L~i~--------------sl~~~l~~~~~~E~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF 186 (327)
T cd02664 121 ARTERFRDLDLSFP--------------SVQDLLNYFLSPEKLTGDNQYYCEKCASLQDAEKEMKVTGAPEYLILTLLRF 186 (327)
T ss_pred cccccceeeecCCC--------------CHHHHHHHhcCeeEccCCCceeCCccCCccceeEEEEcccCChhhEEEeeee
Confidence 87 56766665544 4666666542 346799999998754 5788999999999999999
Q ss_pred ccchhhhhhhcccccceeeecccCCCCcchhhhhhhhcccccccCCcccC------------------C--CCCCCeEEE
Q 037237 1174 CNTIEIEVIFGYSWLEFAVIGWQRDCESSEDVLSTLSALSAELDISNLFE------------------G--YPPDNIYFL 1233 (1267)
Q Consensus 1174 eh~~~~~~~f~~~~~~~~v~~w~~~~~s~~dIs~tl~~~~~~LDLs~ly~------------------g--~d~~~~Y~L 1233 (1267)
+ |.........| ..-+.||..|||+++.. + ..++..|+|
T Consensus 187 ~--------------------~~~~~~~~~Ki-~~~v~fp~~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L 245 (327)
T cd02664 187 S--------------------YDQKTHVREKI-MDNVSINEVLSLPVRVESKSSESPLEKKEEESGDDGELVTRQVHYRL 245 (327)
T ss_pred E--------------------EccccCcceec-CceEecCCEEecCccccccccccccccccccccccccccCCCceEEE
Confidence 6 22211111122 22357888999986431 0 123568999
Q ss_pred EEEEEEec---CCCcEEEEEEecC--------------------CCcEEEecCCCCC
Q 037237 1234 ASMVCVSS---DRQRYIIFVYNHM--------------------LEKYVQSDGATDE 1267 (1267)
Q Consensus 1234 ~aVVcH~G---~gGHYicfvr~~~--------------------~g~W~~fDDs~V~ 1267 (1267)
+|||+|.| ++|||+||+|... .++||.|||+.|+
T Consensus 246 ~~Vi~H~G~~~~~GHY~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~ 302 (327)
T cd02664 246 YAVVVHSGYSSESGHYFTYARDQTDADSTGQECPEPKDAEENDESKNWYLFNDSRVT 302 (327)
T ss_pred EEEEEEccCCCCCcceEEEEecCCccccccccccccccccccCCCCCEEEEeCCceE
Confidence 99999999 6899999999643 3899999999985
No 11
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.1e-39 Score=368.36 Aligned_cols=268 Identities=13% Similarity=0.145 Sum_probs=197.8
Q ss_pred hccCCCCCCcchHHHHHHHhhCcHHHHHHHhccCccccCCC--CCCcHHHHHHHHHHHHhcccCCC----------Cccc
Q 037237 944 WRQFENGTTDSFVNMIVKSLWHLREFREEFMRRRQTIHNHI--GDPCIVCALYDMFAALSTACEDN----------QVEV 1011 (1267)
Q Consensus 944 gL~N~~GgNTCFLNSILQcL~H~p~fRe~fLs~~~~~h~~~--~~~CV~CAL~~LFsal~~ss~~~----------~~e~ 1011 (1267)
||.|. |||||||||||||+|+|+||++|+...+...... ...|+.|+|..+|.++....... ...
T Consensus 1 GL~Nl--GNTCY~NsvLQ~L~~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~- 77 (311)
T cd02658 1 GLRNL--GNSCYLNSVLQVLFSIPSFQWRYDDLENKFPSDVVDPANDLNCQLIKLADGLLSGRYSKPASLKSENDPYQV- 77 (311)
T ss_pred CcccC--CcchHHHHHHHHHHCCHHHHHHHhhhccccCCCcCCccccHHHHHHHHHHHhcCCCcCCCcccccccccccc-
Confidence 78897 9999999999999999999999987322111111 22399999999999987532110 122
Q ss_pred cccchHHHHHHHhcccchHHHhhhhccchHHHHHHHHHHHhhhccCCCCCcCCcccccCCCCCCCCCchheeeeeeEeEe
Q 037237 1012 PSAPSSLRVALTTYSYDKNICKQAKMNDSSELLQAILESLHESFDTVNCDFQSQDEYEGSLDCSSAGCFVHIIFGMDHYE 1091 (1267)
Q Consensus 1012 ~vsPs~Lr~aLs~i~~ds~~F~~g~QqDAhEfL~~LLd~LH~s~~~~~~~~es~e~~~~s~~~~~~~CIIHqLFGg~LrS 1091 (1267)
++.|..|+.+++...+ .|..+.|||||||+.+||+.||..+... ....+.++|+|.+.+
T Consensus 78 ~i~p~~~~~~l~~~~~---~f~~~~QqDa~Efl~~ll~~l~~~~~~~------------------~~~~~~~~f~~~~~~ 136 (311)
T cd02658 78 GIKPSMFKALIGKGHP---EFSTMRQQDALEFLLHLIDKLDRESFKN------------------LGLNPNDLFKFMIED 136 (311)
T ss_pred ccCcHHHHHHHhccCh---hhcccccccHHHHHHHHHHHHHHhhccc------------------ccCCchhheEEEeeE
Confidence 6899999999998877 8999999999999999999999876421 123577899999999
Q ss_pred EEecCCCCCcccc-cccccceeeccchhcccc---ccCCCCCcHHHHHHHhccC--CcccCCcCCCccc--eehccccCC
Q 037237 1092 KVNCVKCSAKFGY-RKYTSLFLTLNAYNLRNM---KKTPRGSSFDVLLKQLVLN--GLLNCGACGQINY--IHHTLWRLP 1163 (1267)
Q Consensus 1092 qV~C~~Cg~~S~t-~pf~~l~l~I~as~l~~~---k~~~~~~SF~~lLk~~~~~--~~~~C~~Cgk~~~--kq~tI~rlP 1163 (1267)
.++|..|++.+.+ ++|..+.++|+....... .......++.++|+.+... -.+.|..|++++. ++..|.++|
T Consensus 137 ~i~C~~C~~~s~~~e~~~~lsL~l~~~~~~~~~~~~~~~~~~sl~~~L~~~~~~e~i~~~C~~C~~~~~a~k~~~i~~lP 216 (311)
T cd02658 137 RLECLSCKKVKYTSELSEILSLPVPKDEATEKEEGELVYEPVPLEDCLKAYFAPETIEDFCSTCKEKTTATKTTGFKTFP 216 (311)
T ss_pred EEEcCCCCCEEEeecceeEEeeecccccccccccccccCCCCCHHHHHHHHcCcccccccccCCCCcccEEEEEEeecCC
Confidence 9999999988776 678788777765432110 0011235899999886432 2467999998765 678899999
Q ss_pred cEEEEEeeccccchhhhhhhcccccceeeecccCCCCcchhhhhhhhcccccccCCcccCCCCCCCeEEEEEEEEEec--
Q 037237 1164 HVFTIGMLRVCNTIEIEVIFGYSWLEFAVIGWQRDCESSEDVLSTLSALSAELDISNLFEGYPPDNIYFLASMVCVSS-- 1241 (1267)
Q Consensus 1164 ~VLtIhLKRFeh~~~~~~~f~~~~~~~~v~~w~~~~~s~~dIs~tl~~~~~~LDLs~ly~g~d~~~~Y~L~aVVcH~G-- 1241 (1267)
+||+||||||... -.|... +.+. -+.+|..+ .+.+|+|+|||+|.|
T Consensus 217 ~vLii~LkRF~~~----------------~~~~~~---Ki~~---~v~~p~~l----------~~~~Y~L~~vI~H~G~~ 264 (311)
T cd02658 217 DYLVINMKRFQLL----------------ENWVPK---KLDV---PIDVPEEL----------GPGKYELIAFISHKGTS 264 (311)
T ss_pred ceEEEEeEEEEec----------------CCCceE---eecc---ccccCCcC----------CCCcEEEEEEEEccCCC
Confidence 9999999999621 123221 1111 12333322 346899999999998
Q ss_pred -CCCcEEEEEEec--CCCcEEEecCCCCC
Q 037237 1242 -DRQRYIIFVYNH--MLEKYVQSDGATDE 1267 (1267)
Q Consensus 1242 -~gGHYicfvr~~--~~g~W~~fDDs~V~ 1267 (1267)
++|||+||+|.. ..|+||.|||+.|+
T Consensus 265 ~~~GHY~~~vk~~~~~~~~W~~fnD~~V~ 293 (311)
T cd02658 265 VHSGHYVAHIKKEIDGEGKWVLFNDEKVV 293 (311)
T ss_pred CCCcceEEEEeCCCCCCCCEEEecCceeE
Confidence 779999999954 23999999999984
No 12
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1e-38 Score=363.26 Aligned_cols=265 Identities=14% Similarity=0.222 Sum_probs=199.1
Q ss_pred hhccCCCCCCcchHHHHHHHhhCcHHHHHHHhccCccccCCCCCCcHHHHHHHHHHHHhcccCCCCccccccchHHHHHH
Q 037237 943 YWRQFENGTTDSFVNMIVKSLWHLREFREEFMRRRQTIHNHIGDPCIVCALYDMFAALSTACEDNQVEVPSAPSSLRVAL 1022 (1267)
Q Consensus 943 ~gL~N~~GgNTCFLNSILQcL~H~p~fRe~fLs~~~~~h~~~~~~CV~CAL~~LFsal~~ss~~~~~e~~vsPs~Lr~aL 1022 (1267)
.||+|. ||||||||+||+|+|+|+||+++++... ...+....|+.|+|+.+|..+..+.. . ...|..+. .+
T Consensus 3 ~GL~N~--GntCY~NsvLQ~L~~~~~f~~~~l~~~~-~~~~~~~~~~~~~l~~lf~~~~~~~~----~-~~~~~~~~-~~ 73 (334)
T cd02659 3 VGLKNQ--GATCYMNSLLQQLYMTPEFRNAVYSIPP-TEDDDDNKSVPLALQRLFLFLQLSES----P-VKTTELTD-KT 73 (334)
T ss_pred CCcccC--CcchHHHHHHHHHhcCHHHHHHHHcCCC-cccCcccccHHHHHHHHHHHHHhCCc----c-ccCcchhh-ee
Confidence 589996 9999999999999999999999998521 12233456999999999999886542 1 34454443 22
Q ss_pred HhcccchHHHhhhhccchHHHHHHHHHHHhhhccCCCCCcCCcccccCCCCCCCCCchheeeeeeEeEeEEecCCCCCcc
Q 037237 1023 TTYSYDKNICKQAKMNDSSELLQAILESLHESFDTVNCDFQSQDEYEGSLDCSSAGCFVHIIFGMDHYEKVNCVKCSAKF 1102 (1267)
Q Consensus 1023 s~i~~ds~~F~~g~QqDAhEfL~~LLd~LH~s~~~~~~~~es~e~~~~s~~~~~~~CIIHqLFGg~LrSqV~C~~Cg~~S 1102 (1267)
.... ...|..+.||||+||+..||+.||..+... ...++|.++|+|.+..+++|..|++.+
T Consensus 74 ~~~~--~~~~~~~~QqDa~Efl~~ll~~l~~~~~~~-----------------~~~~~i~~lF~g~~~~~~~C~~C~~~s 134 (334)
T cd02659 74 RSFG--WDSLNTFEQHDVQEFFRVLFDKLEEKLKGT-----------------GQEGLIKNLFGGKLVNYIICKECPHES 134 (334)
T ss_pred ccCC--CCCCCcccchhHHHHHHHHHHHHHHHhccC-----------------cccchhhhhCceEEEeEEEecCCCcee
Confidence 2221 125667889999999999999999976431 124689999999999999999999988
Q ss_pred cc-cccccceeeccchhccccccCCCCCcHHHHHHHhc------cCCcccCCcCCCccc--eehccccCCcEEEEEeecc
Q 037237 1103 GY-RKYTSLFLTLNAYNLRNMKKTPRGSSFDVLLKQLV------LNGLLNCGACGQINY--IHHTLWRLPHVFTIGMLRV 1173 (1267)
Q Consensus 1103 ~t-~pf~~l~l~I~as~l~~~k~~~~~~SF~~lLk~~~------~~~~~~C~~Cgk~~~--kq~tI~rlP~VLtIhLKRF 1173 (1267)
.. ++|..+.++++. ..++.++|+.+. ..+.|.|++|++... ++..|.++|+||+||||||
T Consensus 135 ~~~e~f~~l~l~i~~-----------~~~l~~~l~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vLii~l~Rf 203 (334)
T cd02659 135 EREEYFLDLQVAVKG-----------KKNLEESLDAYVQGETLEGDNKYFCEKCGKKVDAEKGVCFKKLPPVLTLQLKRF 203 (334)
T ss_pred cccccceEEEEEcCC-----------CCCHHHHHHHhcCeeEecCCccEecCcCCCcccEEEEEEeecCCCEEEEEeeee
Confidence 77 677666655542 245677766542 345799999998843 5678999999999999999
Q ss_pred ccchhhhhhhcccccceeeecccCCCCcchhhhhhhhcccccccCCcccCC-C-----------CCCCeEEEEEEEEEec
Q 037237 1174 CNTIEIEVIFGYSWLEFAVIGWQRDCESSEDVLSTLSALSAELDISNLFEG-Y-----------PPDNIYFLASMVCVSS 1241 (1267)
Q Consensus 1174 eh~~~~~~~f~~~~~~~~v~~w~~~~~s~~dIs~tl~~~~~~LDLs~ly~g-~-----------d~~~~Y~L~aVVcH~G 1241 (1267)
+ ++|......+. .+.+.||..|||+++... . ..+..|+|+|||+|.|
T Consensus 204 ~------------------~~~~~~~~~K~---~~~v~fp~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~vI~H~G 262 (334)
T cd02659 204 E------------------FDFETMMRIKI---NDRFEFPLELDMEPYTEKGLAKKEGDSEKKDSESYIYELHGVLVHSG 262 (334)
T ss_pred E------------------EccccCcceeC---CceEeCCceecCccccccccccccccccccCCCCeeEEEEEEEEecC
Confidence 6 23333222222 223578999999986632 1 1346899999999999
Q ss_pred --CCCcEEEEEEecCCCcEEEecCCCCC
Q 037237 1242 --DRQRYIIFVYNHMLEKYVQSDGATDE 1267 (1267)
Q Consensus 1242 --~gGHYicfvr~~~~g~W~~fDDs~V~ 1267 (1267)
++|||+||+|...+++||.|||+.|+
T Consensus 263 ~~~~GHY~~~vk~~~~~~W~~~nD~~V~ 290 (334)
T cd02659 263 DAHGGHYYSYIKDRDDGKWYKFNDDVVT 290 (334)
T ss_pred CCCCCCeEEEEECCCCCceEEEeCcccE
Confidence 88999999997667999999999984
No 13
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=1.2e-38 Score=356.11 Aligned_cols=225 Identities=20% Similarity=0.241 Sum_probs=175.2
Q ss_pred hccCCCCCCcchHHHHHHHhhCcHHHHHHHhccCccccCCCCCCcHHHHHHHHHHHHhcccCCCCccccccchHHHHHHH
Q 037237 944 WRQFENGTTDSFVNMIVKSLWHLREFREEFMRRRQTIHNHIGDPCIVCALYDMFAALSTACEDNQVEVPSAPSSLRVALT 1023 (1267)
Q Consensus 944 gL~N~~GgNTCFLNSILQcL~H~p~fRe~fLs~~~~~h~~~~~~CV~CAL~~LFsal~~ss~~~~~e~~vsPs~Lr~aLs 1023 (1267)
||.|. |||||||||||||+|+|+||++|++ .|..|...+.
T Consensus 1 Gl~N~--GntCy~NsvLQ~L~~~~~~~~~~l~--------------------------------------~P~~~~~~l~ 40 (279)
T cd02667 1 GLSNL--GNTCFFNAVMQNLSQTPALRELLSE--------------------------------------TPKELFSQVC 40 (279)
T ss_pred CCcCC--CCchHHHHHHHHHhcCHHHHHHHHH--------------------------------------CHHHHHHHHH
Confidence 78896 9999999999999999999999987 2234444444
Q ss_pred hcccchHHHhhhhccchHHHHHHHHHHHhhhccCCCCCcCCcccccCCCCCCCCCchheeeeeeEeEeEEecCCCCCccc
Q 037237 1024 TYSYDKNICKQAKMNDSSELLQAILESLHESFDTVNCDFQSQDEYEGSLDCSSAGCFVHIIFGMDHYEKVNCVKCSAKFG 1103 (1267)
Q Consensus 1024 ~i~~ds~~F~~g~QqDAhEfL~~LLd~LH~s~~~~~~~~es~e~~~~s~~~~~~~CIIHqLFGg~LrSqV~C~~Cg~~S~ 1103 (1267)
...+ .|..+.||||||||..||+.||. +|+++|+|.+.++++|..|++.|.
T Consensus 41 ~~~~---~f~~~~QqDA~Efl~~lld~l~~--------------------------~i~~~F~G~~~~~i~C~~C~~~s~ 91 (279)
T cd02667 41 RKAP---QFKGYQQQDSHELLRYLLDGLRT--------------------------FIDSIFGGELTSTIMCESCGTVSL 91 (279)
T ss_pred HhhH---hhcCCchhhHHHHHHHHHHHHHH--------------------------hhhhhcceEEEEEEEcCCCCCEeC
Confidence 4434 67788999999999999999992 577899999999999999999998
Q ss_pred c-cccccceeeccchhccccccCCCCCcHHHHHHHhc------cCCcccCCcCCCccceehccccCCcEEEEEeeccccc
Q 037237 1104 Y-RKYTSLFLTLNAYNLRNMKKTPRGSSFDVLLKQLV------LNGLLNCGACGQINYIHHTLWRLPHVFTIGMLRVCNT 1176 (1267)
Q Consensus 1104 t-~pf~~l~l~I~as~l~~~k~~~~~~SF~~lLk~~~------~~~~~~C~~Cgk~~~kq~tI~rlP~VLtIhLKRFeh~ 1176 (1267)
+ ++|.++.++++.. .....++.++|+.+. .+++|.|++|++ ..++..|.++|+||+||||||..
T Consensus 92 ~~E~f~~L~Lp~~~~-------~~~~~sL~~~L~~~~~~E~l~~~~~~~C~~C~~-a~k~~~i~~~P~~Lii~LkRF~~- 162 (279)
T cd02667 92 VYEPFLDLSLPRSDE-------IKSECSIESCLKQFTEVEILEGNNKFACENCTK-AKKQYLISKLPPVLVIHLKRFQQ- 162 (279)
T ss_pred ccccceEEecCCCcc-------cCCCCCHHHHHHhhcCeeEecCCCcccCCccCc-eeeEeEhhhCCCeEEEEEecccc-
Confidence 7 6776665543211 112367999987653 456899999988 44677899999999999999962
Q ss_pred hhhhhhhcccccceeeecccCCCCcchhhhhhhhcccccccCCcccCC------CCCCCeEEEEEEEEEec--CCCcEEE
Q 037237 1177 IEIEVIFGYSWLEFAVIGWQRDCESSEDVLSTLSALSAELDISNLFEG------YPPDNIYFLASMVCVSS--DRQRYII 1248 (1267)
Q Consensus 1177 ~~~~~~f~~~~~~~~v~~w~~~~~s~~dIs~tl~~~~~~LDLs~ly~g------~d~~~~Y~L~aVVcH~G--~gGHYic 1248 (1267)
+... ...+. .+.+.||..|||+++... ......|+|+|||+|.| ++|||+|
T Consensus 163 -----------------~~~~-~~~Ki---~~~v~fP~~Ldl~~~~~~~~~~~~~~~~~~Y~L~~vi~H~G~~~~GHY~a 221 (279)
T cd02667 163 -----------------PRSA-NLRKV---SRHVSFPEILDLAPFCDPKCNSSEDKSSVLYRLYGVVEHSGTMRSGHYVA 221 (279)
T ss_pred -----------------Cccc-Cceec---CceEeCCCccchhhccCccccccccCCCceEEEEEEEEEeCCCCCCEeEE
Confidence 1111 11222 334679999999987644 12457999999999999 8999999
Q ss_pred EEEecC---------------------CCcEEEecCCCCC
Q 037237 1249 FVYNHM---------------------LEKYVQSDGATDE 1267 (1267)
Q Consensus 1249 fvr~~~---------------------~g~W~~fDDs~V~ 1267 (1267)
|+|... +++||.|||+.|+
T Consensus 222 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~dD~~V~ 261 (279)
T cd02667 222 YVKVRPPQQRLSDLTKSKPAADEAGPGSGQWYYISDSDVR 261 (279)
T ss_pred EEEcCccccccccccccccccccCCCCCCcEEEEECCccE
Confidence 999643 7899999999984
No 14
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=2.8e-38 Score=362.39 Aligned_cols=258 Identities=17% Similarity=0.193 Sum_probs=189.6
Q ss_pred hhccCCCCCCcchHHHHHHHhhCcHHHHHHHhccCccccCCCCCCcHHHHHHHHHHH---HhcccCCCCccccccchHHH
Q 037237 943 YWRQFENGTTDSFVNMIVKSLWHLREFREEFMRRRQTIHNHIGDPCIVCALYDMFAA---LSTACEDNQVEVPSAPSSLR 1019 (1267)
Q Consensus 943 ~gL~N~~GgNTCFLNSILQcL~H~p~fRe~fLs~~~~~h~~~~~~CV~CAL~~LFsa---l~~ss~~~~~e~~vsPs~Lr 1019 (1267)
.||.|. ||||||||+||||.|+|+||+.+.+.. . .....+.++.+|.. ++.... ....|..|.
T Consensus 25 ~GL~Nl--GnTCYmNSvLQ~L~~~p~fr~~l~~~~------~-~~~~~~~~q~~~~~l~~~~~~~~-----~~~~P~~~~ 90 (332)
T cd02671 25 VGLNNL--GNTCYLNSVLQVLYFCPGFKHGLKHLV------S-LISSVEQLQSSFLLNPEKYNDEL-----ANQAPRRLL 90 (332)
T ss_pred cceecc--CceEeHHHHHHHHHcChHHHHHHHhhh------c-ccCcHHHHHHHHHHHHHHHhhcc-----cccCHHHHH
Confidence 799997 999999999999999999999886532 0 11112344444432 222221 146799999
Q ss_pred HHHHhcccchHHHhhhhccchHHHHHHHHHHHhhhccCCCCCcCCcccccCCCCCCCCCchheeeeeeEeEeEEecCCCC
Q 037237 1020 VALTTYSYDKNICKQAKMNDSSELLQAILESLHESFDTVNCDFQSQDEYEGSLDCSSAGCFVHIIFGMDHYEKVNCVKCS 1099 (1267)
Q Consensus 1020 ~aLs~i~~ds~~F~~g~QqDAhEfL~~LLd~LH~s~~~~~~~~es~e~~~~s~~~~~~~CIIHqLFGg~LrSqV~C~~Cg 1099 (1267)
.++....+ .|..+.||||||||..||+.||. +|+++|+|.+.++++|..|+
T Consensus 91 ~~l~~~~~---~f~~~~QQDA~EFl~~LLd~L~~--------------------------~i~~~F~g~~~~~~~C~~C~ 141 (332)
T cd02671 91 NALREVNP---MYEGYLQHDAQEVLQCILGNIQE--------------------------LVEKDFQGQLVLRTRCLECE 141 (332)
T ss_pred HHHHHhcc---ccCCccccCHHHHHHHHHHHHHH--------------------------HHHhhhceEEEEEEEeCCCC
Confidence 99998877 78889999999999999999984 57789999999999999999
Q ss_pred Ccccc-cccccceeeccchhcccccc--------CCCCCcHHHHHHHhc------cCCcccCCcCCCccc--eehccccC
Q 037237 1100 AKFGY-RKYTSLFLTLNAYNLRNMKK--------TPRGSSFDVLLKQLV------LNGLLNCGACGQINY--IHHTLWRL 1162 (1267)
Q Consensus 1100 ~~S~t-~pf~~l~l~I~as~l~~~k~--------~~~~~SF~~lLk~~~------~~~~~~C~~Cgk~~~--kq~tI~rl 1162 (1267)
+.|.+ ++|.++.++|+.....+... .....++.++|+.+. .+++|.|++|++.+. ++..|.++
T Consensus 142 ~~s~~~E~f~~lsL~i~~~~~~~~~~~~~~~~~~~~~~~tL~~~L~~f~~~E~l~g~n~y~C~~C~~~~~a~k~~~~~~~ 221 (332)
T cd02671 142 TFTERREDFQDISVPVQESELSKSEESSEISPDPKTEMKTLKWAISQFASVERIVGEDKYFCENCHHYTEAERSLLFDKL 221 (332)
T ss_pred CeeceecccEEEEEEeCCCcccccccccccccccccccCCHHHHHHHhCCcceecCCCCeeCCCCCCceeEEEEEEEecC
Confidence 99988 79999998887543211100 011257999987652 456899999998765 56788999
Q ss_pred CcEEEEEeeccccchhhhhhhcccccceeeecccCCCCcchhhhhhhhcccccccCCcccCCCCCCCeEEEEEEEEEec-
Q 037237 1163 PHVFTIGMLRVCNTIEIEVIFGYSWLEFAVIGWQRDCESSEDVLSTLSALSAELDISNLFEGYPPDNIYFLASMVCVSS- 1241 (1267)
Q Consensus 1163 P~VLtIhLKRFeh~~~~~~~f~~~~~~~~v~~w~~~~~s~~dIs~tl~~~~~~LDLs~ly~g~d~~~~Y~L~aVVcH~G- 1241 (1267)
|+||+||||||+..- + .+++.+. ..+ | .+-+.+|..|||.++. ....+..|+|+|||+|.|
T Consensus 222 P~vL~i~LkRF~~~~--------~-----~~~~~~~-~~K--i-~~~v~fp~~L~~~~~~-~~~~~~~Y~L~~VI~H~G~ 283 (332)
T cd02671 222 PEVITIHLKCFAANG--------S-----EFDCYGG-LSK--V-NTPLLTPLKLSLEEWS-TKPKNDVYRLFAVVMHSGA 283 (332)
T ss_pred CCEEEEEeeeecccc--------c-----cccccCC-cee--c-CccccCcccccccccc-CCCCCCeEEEEEEEEEcCC
Confidence 999999999997310 0 0111111 112 2 2224566666766432 223467999999999999
Q ss_pred --CCCcEEEEEEecCCCcEEEecCCCCC
Q 037237 1242 --DRQRYIIFVYNHMLEKYVQSDGATDE 1267 (1267)
Q Consensus 1242 --~gGHYicfvr~~~~g~W~~fDDs~V~ 1267 (1267)
++|||+||+| ||+|||+.|+
T Consensus 284 ~~~~GHY~a~vr------W~~fdD~~V~ 305 (332)
T cd02671 284 TISSGHYTAYVR------WLLFDDSEVK 305 (332)
T ss_pred CCCCCeEEEEEE------EEEEcCcceE
Confidence 6899999999 9999999984
No 15
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-38 Score=364.01 Aligned_cols=293 Identities=18% Similarity=0.251 Sum_probs=222.4
Q ss_pred h-hhccCCCCCCcchHHHHHHHhhCcHHHHHHHhccCccccCCCCCC-----cHHHHHHHHHHHHhcccCCCCccccccc
Q 037237 942 E-YWRQFENGTTDSFVNMIVKSLWHLREFREEFMRRRQTIHNHIGDP-----CIVCALYDMFAALSTACEDNQVEVPSAP 1015 (1267)
Q Consensus 942 ~-~gL~N~~GgNTCFLNSILQcL~H~p~fRe~fLs~~~~~h~~~~~~-----CV~CAL~~LFsal~~ss~~~~~e~~vsP 1015 (1267)
+ .||.|+ ||||||||.||||.|++.||+||+++.+....+..+| .++-+..++..+++.+. .. ++.|
T Consensus 264 GtcGL~Nl--GNTCyMNSaLQCL~ht~eLrdyFlsdeye~~iNe~Nplgmhg~vAsayadLik~ly~~~----~h-af~P 336 (823)
T COG5560 264 GTCGLRNL--GNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDGN----LH-AFTP 336 (823)
T ss_pred cccceecC--CcceecchHHHHHhccHHHHHHhhhhhhHhhhcccCccchhhhHHHHHHHHHHHHhCcc----cc-ccCh
Confidence 5 679997 9999999999999999999999999876555554444 67777788888887443 22 7999
Q ss_pred hHHHHHHHhcccchHHHhhhhccchHHHHHHHHHHHhhhccCCC--CCcCCcc-----------cccCCCCCC--CCCch
Q 037237 1016 SSLRVALTTYSYDKNICKQAKMNDSSELLQAILESLHESFDTVN--CDFQSQD-----------EYEGSLDCS--SAGCF 1080 (1267)
Q Consensus 1016 s~Lr~aLs~i~~ds~~F~~g~QqDAhEfL~~LLd~LH~s~~~~~--~~~es~e-----------~~~~s~~~~--~~~CI 1080 (1267)
+.|+..+..++. .|.+++|||.+||+.++||+||+++++.- +..+.++ .....|.-. ...+|
T Consensus 337 s~fK~tIG~fn~---~fsGy~QQDSqEFiaflLDgLHEdLnRI~~KpytskPdL~~~d~~~vKk~a~ecW~~H~kRNdSi 413 (823)
T COG5560 337 SGFKKTIGSFNE---EFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDVVVKKKAKECWWEHLKRNDSI 413 (823)
T ss_pred HHHHHHHhhhHH---HhcCccchhHHHHHHHHHHHHHHHHHHhhcCcccCCCCCCCcchHHHHHHHHHHHHHHHhcCccc
Confidence 999999999977 89999999999999999999999998532 2222111 001224322 24679
Q ss_pred heeeeeeEeEeEEecCCCCCcccc-cccccceeeccch------------------------------------------
Q 037237 1081 VHIIFGMDHYEKVNCVKCSAKFGY-RKYTSLFLTLNAY------------------------------------------ 1117 (1267)
Q Consensus 1081 IHqLFGg~LrSqV~C~~Cg~~S~t-~pf~~l~l~I~as------------------------------------------ 1117 (1267)
|.++|.|.++|+.+|+.||.+|.+ +||.++.++|+.+
T Consensus 414 ItdLFqgmyKSTL~Cp~C~~vsitfDPfmdlTLPLPvs~vw~htiv~fp~~g~~~pl~iel~~sSt~~~lk~lv~~~~gk 493 (823)
T COG5560 414 ITDLFQGMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVVFPESGRRQPLKIELDASSTIRGLKKLVDAEYGK 493 (823)
T ss_pred HHHHHHHHhhceeeccCcCceeeeecchhhccccCchhhcccccEEEECCCCCCCceEEEEeccchHHHHHHHHHHHhcc
Confidence 999999999999999999999999 8999998876600
Q ss_pred --------------------------------------------------------------------------------
Q 037237 1118 -------------------------------------------------------------------------------- 1117 (1267)
Q Consensus 1118 -------------------------------------------------------------------------------- 1117 (1267)
T Consensus 494 ~gc~ei~v~~iy~g~~y~~l~~~dk~ll~~I~~~d~vylYe~~~ngi~vpvvh~~~~~gYks~rlFg~pflqlnv~~~~~ 573 (823)
T COG5560 494 LGCFEIKVMCIYYGGNYNMLEPADKVLLQDIPQTDFVYLYETNDNGIEVPVVHLRIEKGYKSKRLFGDPFLQLNVLIKAS 573 (823)
T ss_pred CCccceeEEEEEeccchhhcchhhHHHHhhcCccceEEEeecCCCCeEEEEEeccccccccchhhhCCcceEEEeecchh
Confidence
Q ss_pred ---hc--------cc--cc-----------------------------------------------------c-------
Q 037237 1118 ---NL--------RN--MK-----------------------------------------------------K------- 1124 (1267)
Q Consensus 1118 ---~l--------~~--~k-----------------------------------------------------~------- 1124 (1267)
.| .. .+ |
T Consensus 574 i~~kLvkE~~ell~~v~~k~tdvd~~~~q~~l~r~es~p~~wl~l~teid~kree~veeE~~~n~nd~vvi~cew~ek~y 653 (823)
T COG5560 574 IYDKLVKEFEELLVLVEMKKTDVDLVSEQVRLLREESSPSSWLKLETEIDTKREEQVEEEGQMNFNDAVVISCEWEEKRY 653 (823)
T ss_pred hHHHHHHHHHHHHHHHhhcchhhhhhhhhccchhcccCcchhhhhhhhccchhhhhhhhhhccCCCcceEEeeeccccch
Confidence 00 00 00 0
Q ss_pred --C---------------CCCCcHHHHHHHhc------cCCcccCCcCCCccc--eehccccCCcEEEEEeeccccchhh
Q 037237 1125 --T---------------PRGSSFDVLLKQLV------LNGLLNCGACGQINY--IHHTLWRLPHVFTIGMLRVCNTIEI 1179 (1267)
Q Consensus 1125 --~---------------~~~~SF~~lLk~~~------~~~~~~C~~Cgk~~~--kq~tI~rlP~VLtIhLKRFeh~~~~ 1179 (1267)
. .+..++++||..+. ..+.|.|++|+..+. ||+-||++|.||+||||||+-
T Consensus 654 ~~lFsy~~lw~~~ei~~~~rtiTL~dCl~eFskpEqLgl~DswyCpgCkefrqasKqmelwrlP~iLiihLkRFss---- 729 (823)
T COG5560 654 LSLFSYDPLWTIREIGAAERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSS---- 729 (823)
T ss_pred hhhhcCCccchhHHhhhccCCCcHHHHHHHhccHhhcCCcccccCCchHhhhhhhhhhhhhcCChheeeehhhhhh----
Confidence 0 01235667776553 457899999997754 899999999999999999971
Q ss_pred hhhhcccccceeeecccCCCCcchhhhhhhhcccc-cccCCccc-CCCCCCCeEEEEEEEEEec--CCCcEEEEEEecCC
Q 037237 1180 EVIFGYSWLEFAVIGWQRDCESSEDVLSTLSALSA-ELDISNLF-EGYPPDNIYFLASMVCVSS--DRQRYIIFVYNHML 1255 (1267)
Q Consensus 1180 ~~~f~~~~~~~~v~~w~~~~~s~~dIs~tl~~~~~-~LDLs~ly-~g~d~~~~Y~L~aVVcH~G--~gGHYicfvr~~~~ 1255 (1267)
+ . ...+.| .+|+.+|- .|||+.+- .-.+|.-.|+||||=+||| .|||||||+|+..+
T Consensus 730 ------------~----r--sfrdKi-ddlVeyPiddldLs~~~~~~~~p~liydlyavDNHygglsgGHYtAyarn~~n 790 (823)
T COG5560 730 ------------V----R--SFRDKI-DDLVEYPIDDLDLSGVEYMVDDPRLIYDLYAVDNHYGGLSGGHYTAYARNFAN 790 (823)
T ss_pred ------------c----c--cchhhh-hhhhccccccccccceEEeecCcceEEEeeeccccccccCCcceeeeeecccC
Confidence 1 1 112333 56677775 58888732 2235667899999999998 99999999999889
Q ss_pred CcEEEecCCCCC
Q 037237 1256 EKYVQSDGATDE 1267 (1267)
Q Consensus 1256 g~W~~fDDs~V~ 1267 (1267)
++||.|||+.|+
T Consensus 791 ~~wy~fdDsrit 802 (823)
T COG5560 791 NGWYLFDDSRIT 802 (823)
T ss_pred CceEEecCcccc
Confidence 999999999985
No 16
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-36 Score=330.02 Aligned_cols=292 Identities=17% Similarity=0.233 Sum_probs=203.7
Q ss_pred HhhhhhhccCCCCCCcchHHHHHHHhhCcHHHHHHHhccCccccCC----CCCCcHHHHHHHHHHHHhcccCCCCccccc
Q 037237 938 EAYLEYWRQFENGTTDSFVNMIVKSLWHLREFREEFMRRRQTIHNH----IGDPCIVCALYDMFAALSTACEDNQVEVPS 1013 (1267)
Q Consensus 938 ~~~l~~gL~N~~GgNTCFLNSILQcL~H~p~fRe~fLs~~~~~h~~----~~~~CV~CAL~~LFsal~~ss~~~~~e~~v 1013 (1267)
..+++.||+|. |||||||++||||..+..|..-|+.+.+..-.+ .+.+ --.+..-|..++..... .+...+
T Consensus 67 dn~~p~GL~N~--GNtCymNc~lQCl~~~~dL~~M~~~~~ylq~INtd~prg~~--g~~~~k~F~~l~~~~~~-Hg~~si 141 (415)
T COG5533 67 DNLPPNGLRNK--GNTCYMNCALQCLLSIGDLNTMLQGRFYLQNINTDFPRGKP--GSNAFKQFIALYETPGC-HGPKSI 141 (415)
T ss_pred cccCCcccccc--CceehHHHHHHHHHhhhHHHHHhhhhhhhhhccCCCCCCCc--chhHHHHHHHHHhcccc-CCCccc
Confidence 36677999997 999999999999999999999555543221111 1211 12345567777765532 333469
Q ss_pred cchHHHHHHHhcccchHHHhhhhccchHHHHHHHHHHHhhhccCCCCC---cCCcc--cc--c---------CCCCCC--
Q 037237 1014 APSSLRVALTTYSYDKNICKQAKMNDSSELLQAILESLHESFDTVNCD---FQSQD--EY--E---------GSLDCS-- 1075 (1267)
Q Consensus 1014 sPs~Lr~aLs~i~~ds~~F~~g~QqDAhEfL~~LLd~LH~s~~~~~~~---~es~e--~~--~---------~s~~~~-- 1075 (1267)
+|.+|...+..+.+ .|...+|||||||++++||.||+++++..+. .+..| .. . -.|.-.
T Consensus 142 s~~nF~~i~~~~n~---~fs~dmQqD~qEFl~fflD~LHedln~N~Srs~i~~l~de~e~~Reel~l~~~S~~EWn~~L~ 218 (415)
T COG5533 142 SPRNFIDILSGRNK---LFSGDMQQDSQEFLIFFLDLLHEDLNGNKSRSPILELKDEFEEVREELPLSHFSHHEWNLHLR 218 (415)
T ss_pred chHHHHHHHccccc---cccccchhhHHHHHHHHHHHHHhhhcCCcccccccccchHHHHHHhhcCcchhhhhhhHHhhc
Confidence 99999999999988 8988899999999999999999999764311 11111 00 0 013222
Q ss_pred CCCchheeeeeeEeEeEEecCCCCCcccc-cccccceeeccchhccccccCCCCCcHHHHHHHh------ccCCcccCCc
Q 037237 1076 SAGCFVHIIFGMDHYEKVNCVKCSAKFGY-RKYTSLFLTLNAYNLRNMKKTPRGSSFDVLLKQL------VLNGLLNCGA 1148 (1267)
Q Consensus 1076 ~~~CIIHqLFGg~LrSqV~C~~Cg~~S~t-~pf~~l~l~I~as~l~~~k~~~~~~SF~~lLk~~------~~~~~~~C~~ 1148 (1267)
...++|-..|.|+..++..|..|+++|+| .+|+.+..+++- +.+. -+.+|++.+ ...++|.|+.
T Consensus 219 sn~S~v~~~f~gq~~srlqC~~C~~TStT~a~fs~l~vp~~~--v~~~-------~l~eC~~~f~~~e~L~g~d~W~Cpk 289 (415)
T COG5533 219 SNKSLVAKTFFGQDKSRLQCEACNYTSTTIAMFSTLLVPPYE--VVQL-------GLQECIDRFYEEEKLEGKDAWRCPK 289 (415)
T ss_pred cchHHHHHHHhhhhhhhhhhhhcCCceeEEeccceeeeccch--heee-------cHHHHHHHhhhHHhhcCcccccCch
Confidence 23489999999999999999999999999 688888766553 2111 145555443 4678999999
Q ss_pred CCCccc--eehccccCCcEEEEEeeccccchhhhhhhcccccceeeecccCCCCcchhhhhhhhcccccccCCccc-CCC
Q 037237 1149 CGQINY--IHHTLWRLPHVFTIGMLRVCNTIEIEVIFGYSWLEFAVIGWQRDCESSEDVLSTLSALSAELDISNLF-EGY 1225 (1267)
Q Consensus 1149 Cgk~~~--kq~tI~rlP~VLtIhLKRFeh~~~~~~~f~~~~~~~~v~~w~~~~~s~~dIs~tl~~~~~~LDLs~ly-~g~ 1225 (1267)
|+.++. |++.|.++|.+|+||++||.- .|+..++ --.-.+|... ++.+....+.+ .|.
T Consensus 290 C~~k~ss~K~~~I~~lP~~LII~i~RF~i----~V~~~~k--iD~p~gw~~~-------------~~~e~~v~~~f~~~~ 350 (415)
T COG5533 290 CGRKESSRKRMEILVLPDVLIIHISRFHI----SVMGRKK--IDTPQGWKNT-------------ASVEVNVTLLFNNGI 350 (415)
T ss_pred hcccccchheEEEEecCceEEEEeeeeeE----Eeecccc--cCCCcchhcc-------------CCceecccccccCCC
Confidence 998765 788999999999999999971 1111100 0001123222 22222222222 222
Q ss_pred C-CCCeEEEEEEEEEec--CCCcEEEEEEecCCCcEEEecCCCCC
Q 037237 1226 P-PDNIYFLASMVCVSS--DRQRYIIFVYNHMLEKYVQSDGATDE 1267 (1267)
Q Consensus 1226 d-~~~~Y~L~aVVcH~G--~gGHYicfvr~~~~g~W~~fDDs~V~ 1267 (1267)
. ++.+|+|+|||||+| +||||+++|+ .+|.|+.|||+.|+
T Consensus 351 ~~~P~~Y~L~gv~Ch~G~L~gGHY~s~v~--~~~~W~~~dDs~vr 393 (415)
T COG5533 351 GYIPRKYSLLGVVCHNGTLNGGHYFSEVK--RSGTWNVYDDSQVR 393 (415)
T ss_pred CCCccceeEEEEEeecceecCceeEEeee--ecCceEEechhhee
Confidence 2 668999999999999 9999999999 68999999999885
No 17
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=100.00 E-value=2.6e-33 Score=302.13 Aligned_cols=236 Identities=18% Similarity=0.288 Sum_probs=176.6
Q ss_pred hhccCCCCCCcchHHHHHHHhhCcHHHHHHHhccCcc-----ccCCCCCCcHHHHHHHHHHHHhcccCCCCccccccchH
Q 037237 943 YWRQFENGTTDSFVNMIVKSLWHLREFREEFMRRRQT-----IHNHIGDPCIVCALYDMFAALSTACEDNQVEVPSAPSS 1017 (1267)
Q Consensus 943 ~gL~N~~GgNTCFLNSILQcL~H~p~fRe~fLs~~~~-----~h~~~~~~CV~CAL~~LFsal~~ss~~~~~e~~vsPs~ 1017 (1267)
.||.|. ||||||||+||+|+|+|+||+++++.... ........|+.++|+.+|..+..... ... .+.|..
T Consensus 2 ~Gl~N~--gntCylNs~lQ~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~--~~~-~i~~~~ 76 (269)
T PF00443_consen 2 VGLQNI--GNTCYLNSVLQCLFHIPPFRNYLLSYNSEKENNESNPSKKIKEFLQQLQNLFRSLWSSNS--SDS-SISPSD 76 (269)
T ss_dssp -EESBS--SSTHHHHHHHHHHHTSHHHHHHHHTTCHHHHHHCSSTTSCTCHHHHHHHHHHHHHHSSCS--SSS-EEHCHH
T ss_pred CCcEeC--CCchHHhHHHHhhhhhhhhhhhhhhcccchhhccccccccccchhhhhhhhhhhhhhhcc--ccc-ceeecc
Confidence 689996 99999999999999999999999974110 11122334899999999999996521 122 799999
Q ss_pred HHHHHHhcccchHHHhhhhccchHHHHHHHHHHHhhhccCCCCCcCCcccccCCCCCCCCCchheeeeeeEeEeEEecCC
Q 037237 1018 LRVALTTYSYDKNICKQAKMNDSSELLQAILESLHESFDTVNCDFQSQDEYEGSLDCSSAGCFVHIIFGMDHYEKVNCVK 1097 (1267)
Q Consensus 1018 Lr~aLs~i~~ds~~F~~g~QqDAhEfL~~LLd~LH~s~~~~~~~~es~e~~~~s~~~~~~~CIIHqLFGg~LrSqV~C~~ 1097 (1267)
+..+|....+ .|..+.||||+|||..||+.||......... .. . ........++++++|++.+.+.+.|..
T Consensus 77 ~~~~l~~~~~---~~~~~~qqDa~E~l~~ll~~l~~~~~~~~~~---~~--~-~~~~~~~~~~~~~~f~~~~~~~~~c~~ 147 (269)
T PF00443_consen 77 FINALSSINP---SFSNGEQQDAHEFLSFLLDWLDEEFNSSFKR---KS--W-KNTNSSEDSLISDLFGGQFESSIKCSS 147 (269)
T ss_dssp HHHHHHHHCG---GGGSSSTEEHHHHHHHHHHHHHHHHTSCSSH---HH--H-HHHHCCEESHHHHHH-EEEEEEEEETT
T ss_pred cccccccccc---ccccccccchhhhhcccccccchhhcccccc---cc--c-ccccccccccccccccccccccccccc
Confidence 9999999877 5888899999999999999999987652100 00 0 011123568999999999999999999
Q ss_pred CCCcccccccccceeeccchhccccccCCCCCcHHHHHHHhccCCcccCCcCCCccceehccccCCcEEEEEeeccccch
Q 037237 1098 CSAKFGYRKYTSLFLTLNAYNLRNMKKTPRGSSFDVLLKQLVLNGLLNCGACGQINYIHHTLWRLPHVFTIGMLRVCNTI 1177 (1267)
Q Consensus 1098 Cg~~S~t~pf~~l~l~I~as~l~~~k~~~~~~SF~~lLk~~~~~~~~~C~~Cgk~~~kq~tI~rlP~VLtIhLKRFeh~~ 1177 (1267)
|+.. +..+.++|+||+||||||.
T Consensus 148 c~~~------------------------------------------------------~~~~~~~P~~L~i~l~R~~--- 170 (269)
T PF00443_consen 148 CKNS------------------------------------------------------QSSISSLPPILIIQLKRFE--- 170 (269)
T ss_dssp TTCE------------------------------------------------------EEEEEEBBSEEEEEEE-EE---
T ss_pred cccc------------------------------------------------------ccccccccceeeeccccce---
Confidence 9887 6667899999999999994
Q ss_pred hhhhhhcccccceeeecccCCCCcchhhhhhhhccc-ccccCCcccCCCC----CCCeEEEEEEEEEec--CCCcEEEEE
Q 037237 1178 EIEVIFGYSWLEFAVIGWQRDCESSEDVLSTLSALS-AELDISNLFEGYP----PDNIYFLASMVCVSS--DRQRYIIFV 1250 (1267)
Q Consensus 1178 ~~~~~f~~~~~~~~v~~w~~~~~s~~dIs~tl~~~~-~~LDLs~ly~g~d----~~~~Y~L~aVVcH~G--~gGHYicfv 1250 (1267)
|.........+ ...+.+| ..|||++++.... ....|+|+|||+|.| ++|||+||+
T Consensus 171 -----------------~~~~~~~~~K~-~~~v~~~~~~l~l~~~~~~~~~~~~~~~~Y~L~avi~H~G~~~~GHY~a~v 232 (269)
T PF00443_consen 171 -----------------FDQETGRSKKI-NNPVEFPLEELDLSPYLEKNNSECQSNVKYRLVAVIVHYGSADSGHYVAYV 232 (269)
T ss_dssp -----------------EESTSSEEEE---CEEB--SSEEEGGGGBSSCCCTHTSSSEEEEEEEEEEESSTTSEEEEEEE
T ss_pred -----------------ecccccccccc-ccccccCchhhhhhhhhccccccccccceeeehhhhccccccccceEEEee
Confidence 33322212222 2335688 6899998775432 257999999999999 899999999
Q ss_pred EecCCCcEEEecCCCCC
Q 037237 1251 YNHMLEKYVQSDGATDE 1267 (1267)
Q Consensus 1251 r~~~~g~W~~fDDs~V~ 1267 (1267)
|+...++|+.|||+.|+
T Consensus 233 ~~~~~~~W~~~dD~~v~ 249 (269)
T PF00443_consen 233 RDSDDGKWYKFDDSRVT 249 (269)
T ss_dssp EETTTTEEEEEETTEEE
T ss_pred ccccCCeEEEeeCCceE
Confidence 97766789999999884
No 18
>KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-33 Score=335.24 Aligned_cols=285 Identities=20% Similarity=0.304 Sum_probs=219.8
Q ss_pred hhccCCCCCCcchHHHHHHHhhCcHHHHHHHhccCccccC-CCCCCcHHHHHHHHHHHHhcccCCCCccccccchHHHHH
Q 037237 943 YWRQFENGTTDSFVNMIVKSLWHLREFREEFMRRRQTIHN-HIGDPCIVCALYDMFAALSTACEDNQVEVPSAPSSLRVA 1021 (1267)
Q Consensus 943 ~gL~N~~GgNTCFLNSILQcL~H~p~fRe~fLs~~~~~h~-~~~~~CV~CAL~~LFsal~~ss~~~~~e~~vsPs~Lr~a 1021 (1267)
.|+.|. |+|||||+|||+|.|.|..+..++...|.... +....|+.|++.++|.+++.+.. + +++.|..+.+.
T Consensus 162 ~g~~n~--g~tcfmn~ilqsl~~~~~~~~~~l~~~h~~~~~~~~~~~l~~~~~~~~~~~~s~~~---~-~~~sp~~~l~~ 235 (492)
T KOG1867|consen 162 RGLRNL--GSTCFMNVILQSLLHDPLSRSSFLSGIHSKEPSSSGSSCLVCDLDRLFQALYSGHN---R-TPYSPFELLNL 235 (492)
T ss_pred cccccc--cHHHHHHHHHHHhhccchhhccchhhhcccCCCCCCCcchhhhhhhhhhHhhcCCC---C-CCcChHHHHHH
Confidence 566775 99999999999999999999999987654222 22355999999999999996541 3 38999999999
Q ss_pred HHhcccchHHHhhhhccchHHHHHHHHHHHhhhccCCCCCcCCcccccCCCCCCCCCchheeeeeeEeEeEEecCCCCCc
Q 037237 1022 LTTYSYDKNICKQAKMNDSSELLQAILESLHESFDTVNCDFQSQDEYEGSLDCSSAGCFVHIIFGMDHYEKVNCVKCSAK 1101 (1267)
Q Consensus 1022 Ls~i~~ds~~F~~g~QqDAhEfL~~LLd~LH~s~~~~~~~~es~e~~~~s~~~~~~~CIIHqLFGg~LrSqV~C~~Cg~~ 1101 (1267)
.++..+ .|+++.|||||||++++++.+|+.....+ +..- .......|.|+|+.+|.|.|.++|+|..|+..
T Consensus 236 ~~k~~~---~~~g~~Qqda~eF~~~~~~~~~~~~~~~~---k~~~---~~~~~~~c~~iv~~~F~G~L~~~v~c~~c~~~ 306 (492)
T KOG1867|consen 236 VWKHSP---NLAGYEQQDAHEFLIALLDRLHREKDDCG---KSLI---ASQSNKQCPCIVHTIFSGTLQSDVTCQTCGSK 306 (492)
T ss_pred HHHhCc---ccccccccchHHHHHHhcccccccccccc---cccc---cccCCcccccccceeecceeccceeehhhcce
Confidence 999988 78889999999999999999999882111 0000 00111157999999999999999999999999
Q ss_pred ccc-cccccceeeccchhccccccCCCCCcHHHHHHHhc------cCCcccCCcCCCccc--eehccccCCcEEEEEeec
Q 037237 1102 FGY-RKYTSLFLTLNAYNLRNMKKTPRGSSFDVLLKQLV------LNGLLNCGACGQINY--IHHTLWRLPHVFTIGMLR 1172 (1267)
Q Consensus 1102 S~t-~pf~~l~l~I~as~l~~~k~~~~~~SF~~lLk~~~------~~~~~~C~~Cgk~~~--kq~tI~rlP~VLtIhLKR 1172 (1267)
|++ +||.++++.|+..-...-... +..++.+++..+. ...++.|..|+..+. ++++|.++|.|+++||||
T Consensus 307 S~~~dpf~disL~i~~~~~~~~~~~-~~~~~~~cl~~~~~~~~~~~~~~~~c~~c~~~~~~~kql~~~~lP~~l~~~lkR 385 (492)
T KOG1867|consen 307 STTYDPFMDISLDIPDQFTSSSVRS-PELTLLDCLDRFTRSEQLGKDSKYKCSSCKSKQESTKQLTIRKLPAVLCLHLKR 385 (492)
T ss_pred eeeccCccceeeecchhccCccccc-chhhhhhhhhhhhhhhhcCcccccccCCcccccccccccccccCCceeeeeecc
Confidence 976 899999999885432211110 0123555554432 356899999998864 799999999999999999
Q ss_pred cccchhhhhhhcccccceeeecccCCCCcchhhhhhhhcccccccCCcccCC--C---C-CCCeEEEEEEEEEec--CCC
Q 037237 1173 VCNTIEIEVIFGYSWLEFAVIGWQRDCESSEDVLSTLSALSAELDISNLFEG--Y---P-PDNIYFLASMVCVSS--DRQ 1244 (1267)
Q Consensus 1173 Feh~~~~~~~f~~~~~~~~v~~w~~~~~s~~dIs~tl~~~~~~LDLs~ly~g--~---d-~~~~Y~L~aVVcH~G--~gG 1244 (1267)
|+|. ...... . ..+.+.||..|+|.+++.. . + +...|+|+|||+|+| ++|
T Consensus 386 fe~~--------------------~~~~~~-k-i~~~v~fp~~l~m~p~~~~~~~~~~~~~~~~Y~L~AVV~H~G~~~SG 443 (492)
T KOG1867|consen 386 FEHS--------------------ATGARE-K-IDSYVSFPVLLNMKPYCSSEKLKSQDNPDHLYELRAVVVHHGTVGSG 443 (492)
T ss_pred cccc--------------------cccccc-c-cCcccccchhhcCCccccccccccCCCCCceEEEEEEEEeccCCCCC
Confidence 9853 222221 1 2556789999999997742 1 2 357999999999999 999
Q ss_pred cEEEEEEecCCCcEEEecCCCCC
Q 037237 1245 RYIIFVYNHMLEKYVQSDGATDE 1267 (1267)
Q Consensus 1245 HYicfvr~~~~g~W~~fDDs~V~ 1267 (1267)
||+||.| ..|.||+|||++|.
T Consensus 444 HY~aY~r--~~~~~~~~dDs~v~ 464 (492)
T KOG1867|consen 444 HYVAYRR--QSGGWFKCDDSTVT 464 (492)
T ss_pred ceEEEEE--eCCCcEEEcCeEEE
Confidence 9999999 56999999999984
No 19
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=100.00 E-value=3.9e-33 Score=305.92 Aligned_cols=193 Identities=18% Similarity=0.317 Sum_probs=152.4
Q ss_pred hccCCCCCCcchHHHHHHHhhCcHHHHHHHhccCccccCCCCCCcHHHHHHHHHHHHhcccCCCCccccccchHHHHHHH
Q 037237 944 WRQFENGTTDSFVNMIVKSLWHLREFREEFMRRRQTIHNHIGDPCIVCALYDMFAALSTACEDNQVEVPSAPSSLRVALT 1023 (1267)
Q Consensus 944 gL~N~~GgNTCFLNSILQcL~H~p~fRe~fLs~~~~~h~~~~~~CV~CAL~~LFsal~~ss~~~~~e~~vsPs~Lr~aLs 1023 (1267)
||+|. ||||||||+||+|.|+|+||+++.+..
T Consensus 1 Gl~N~--g~tCy~ns~lQ~L~~~~~f~~~~~~~~---------------------------------------------- 32 (240)
T cd02662 1 GLVNL--GNTCFMNSVLQALASLPSLIEYLEEFL---------------------------------------------- 32 (240)
T ss_pred CCcCC--CCccHHHHHHHHHHCCHHHHHHHHHHH----------------------------------------------
Confidence 78897 999999999999999999999887521
Q ss_pred hcccchHHHhhhhccchHHHHHHHHHHHhhhccCCCCCcCCcccccCCCCCCCCCchheeeeeeEeEeEEecCCCCCccc
Q 037237 1024 TYSYDKNICKQAKMNDSSELLQAILESLHESFDTVNCDFQSQDEYEGSLDCSSAGCFVHIIFGMDHYEKVNCVKCSAKFG 1103 (1267)
Q Consensus 1024 ~i~~ds~~F~~g~QqDAhEfL~~LLd~LH~s~~~~~~~~es~e~~~~s~~~~~~~CIIHqLFGg~LrSqV~C~~Cg~~S~ 1103 (1267)
.||||||||..||+.||. .++++|+|.+.++++|..|++.|.
T Consensus 33 ------------~QqDa~EFl~~ll~~l~~--------------------------~i~~~F~g~~~~~i~C~~C~~~s~ 74 (240)
T cd02662 33 ------------EQQDAHELFQVLLETLEQ--------------------------LLKFPFDGLLASRIVCLQCGESSK 74 (240)
T ss_pred ------------hhcCHHHHHHHHHHHHHH--------------------------hccCccccEEEEEEEeCCCCCccC
Confidence 689999999999999993 355789999999999999999976
Q ss_pred c--cccccceeeccchhccccccCCCCCcHHHHHHHhccC---CcccCCcCCCccceehccccCCcEEEEEeeccccchh
Q 037237 1104 Y--RKYTSLFLTLNAYNLRNMKKTPRGSSFDVLLKQLVLN---GLLNCGACGQINYIHHTLWRLPHVFTIGMLRVCNTIE 1178 (1267)
Q Consensus 1104 t--~pf~~l~l~I~as~l~~~k~~~~~~SF~~lLk~~~~~---~~~~C~~Cgk~~~kq~tI~rlP~VLtIhLKRFeh~~~ 1178 (1267)
. ++|..+.++|+.... ....++.++|+.+... +.|.|.+| +..|.++|+||+||||||+
T Consensus 75 ~~~e~f~~LsL~ip~~~~------~~~~sl~~~L~~~~~~E~l~~~~C~~C------~~~i~~lP~vLii~LkRF~---- 138 (240)
T cd02662 75 VRYESFTMLSLPVPNQSS------GSGTTLEHCLDDFLSTEIIDDYKCDRC------QTVIVRLPQILCIHLSRSV---- 138 (240)
T ss_pred cceeeeeeeEecccccCC------CCCCCHHHHHHHhcCcccccCcCCCCC------eEEeecCCcEEEEEEEEEE----
Confidence 4 678888777765321 1235789998876422 35899999 5678999999999999996
Q ss_pred hhhhhcccccceeeecccC-CCCcchhhhhhhhcccccccCCcccCCCCCCCeEEEEEEEEEec--CCCcEEEEEEec--
Q 037237 1179 IEVIFGYSWLEFAVIGWQR-DCESSEDVLSTLSALSAELDISNLFEGYPPDNIYFLASMVCVSS--DRQRYIIFVYNH-- 1253 (1267)
Q Consensus 1179 ~~~~f~~~~~~~~v~~w~~-~~~s~~dIs~tl~~~~~~LDLs~ly~g~d~~~~Y~L~aVVcH~G--~gGHYicfvr~~-- 1253 (1267)
|.. ....+. .+-+.||..| ++..|+|+|||+|.| ++|||+||+|.+
T Consensus 139 ----------------~~~~~~~~K~---~~~v~fp~~l----------~~~~Y~L~avi~H~G~~~~GHY~~~~k~~~~ 189 (240)
T cd02662 139 ----------------FDGRGTSTKN---SCKVSFPERL----------PKVLYRLRAVVVHYGSHSSGHYVCYRRKPLF 189 (240)
T ss_pred ----------------EcCCCceeee---ccEEECCCcc----------CCceEEEEEEEEEeccCCCceEEEEEeCCCc
Confidence 222 111122 1223455544 568999999999999 899999999965
Q ss_pred ------------------CCCcEEEecCCCCC
Q 037237 1254 ------------------MLEKYVQSDGATDE 1267 (1267)
Q Consensus 1254 ------------------~~g~W~~fDDs~V~ 1267 (1267)
..++||.|||+.|+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~ 221 (240)
T cd02662 190 SKDKEPGSFVRMREGPSSTSHPWWRISDTTVK 221 (240)
T ss_pred ccccccccccccccccCccCCCEEEEechheE
Confidence 24999999999985
No 20
>KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.2e-32 Score=333.24 Aligned_cols=292 Identities=17% Similarity=0.186 Sum_probs=203.9
Q ss_pred hhhhhhccCCCCCCcchHHHHHHHhhCcHHHHHHHhccCccccCCC----CCCcHHHHHHHHHHHHhcccCCCCcccccc
Q 037237 939 AYLEYWRQFENGTTDSFVNMIVKSLWHLREFREEFMRRRQTIHNHI----GDPCIVCALYDMFAALSTACEDNQVEVPSA 1014 (1267)
Q Consensus 939 ~~l~~gL~N~~GgNTCFLNSILQcL~H~p~fRe~fLs~~~~~h~~~----~~~CV~CAL~~LFsal~~ss~~~~~e~~vs 1014 (1267)
.....||+|. |||||||+|||||..++.||+.|++..+...... ...-+.-++..++..+.... .. .++.
T Consensus 298 ~~~~~GL~Nl--GntC~mn~ilQCl~~t~~lr~~~L~~~~~~~i~~~~~~~~~~l~~~~~~~l~~~~~~~---~~-~s~~ 371 (653)
T KOG1868|consen 298 VFGCPGLRNL--GNTCFMNSILQCLFSTGELRDNFLSIKLPQFINLDLFFGAEELESACAKLLQKLWHGH---GQ-FSVL 371 (653)
T ss_pred ccCCceeccC--CcchHHHHHHHHHhhccccchhhhhHHHHHHcccCCcccchhHHHHHHHhhhhhccCC---Cc-eecC
Confidence 3345899997 9999999999999999999999998644333331 11011122222222222221 12 2688
Q ss_pred chHHHHHHHhcccchHHHhhhhccchHHHHHHHHHHHhhhccCCCC------CcCCc----ccc------cCCCCCCC--
Q 037237 1015 PSSLRVALTTYSYDKNICKQAKMNDSSELLQAILESLHESFDTVNC------DFQSQ----DEY------EGSLDCSS-- 1076 (1267)
Q Consensus 1015 Ps~Lr~aLs~i~~ds~~F~~g~QqDAhEfL~~LLd~LH~s~~~~~~------~~es~----e~~------~~s~~~~~-- 1076 (1267)
|..|...+..+.+ .|..+.||||+||+.++|+.||.+++.... ...+. ... .-.|....
T Consensus 372 P~~f~~~~~~y~~---~~~~~~Qqd~qEfl~~lld~Lhe~ln~~~~~~~~~p~~~~~~~~~~~~~~s~~s~~~w~~~~~~ 448 (653)
T KOG1868|consen 372 PRRFIRVLKRYSP---NFSGYSQQDAQEFLIFLLDRLHEELNENTRPLKLSPLMGSYLLSELELSDSKKSLAEWLRYLEE 448 (653)
T ss_pred cHHHHHHHhhccc---ccccccccchHHHHHHHHHhhhHhhhccCCCCccCccccccccccccccccchhHHHHHhhccc
Confidence 9999999999988 777778999999999999999999976321 11110 000 00132221
Q ss_pred CCchheeeeeeEeEeEEecCCCCCcccc-cccccceeeccchhccccccCCCCCcHHHHHHHh------ccCCcccCCcC
Q 037237 1077 AGCFVHIIFGMDHYEKVNCVKCSAKFGY-RKYTSLFLTLNAYNLRNMKKTPRGSSFDVLLKQL------VLNGLLNCGAC 1149 (1267)
Q Consensus 1077 ~~CIIHqLFGg~LrSqV~C~~Cg~~S~t-~pf~~l~l~I~as~l~~~k~~~~~~SF~~lLk~~------~~~~~~~C~~C 1149 (1267)
....|.++|.|++.+.++|..||++|.+ .+|+++.++|+....... ..++.+|++.+ +.++.|.|++|
T Consensus 449 ~d~~i~~lf~gQ~ks~Lkc~~cg~~s~t~~~f~~lslpIp~~~~~~~-----~~~L~~C~~~ft~~ekle~~~~w~Cp~c 523 (653)
T KOG1868|consen 449 EDSKIGDLFVGQLKSYLKCQACGYTSTTFETFTDLSLPIPKKGFAGG-----KVSLEDCLSLFTKEEKLEGDEAWLCPRC 523 (653)
T ss_pred cchHHHHHHHHHHHhheehhhcCCcceeeecceeeEEeccccccccc-----ccchHhhhccccchhhcccccccCCccc
Confidence 3455888999999999999999999998 689999988886543322 24567777654 46788999999
Q ss_pred CCccc----eehccccCCcEEEEEeeccccchhhhhhhcccccceeeecccCCCCcchhhhhhhhcccc-cccCCcccC-
Q 037237 1150 GQINY----IHHTLWRLPHVFTIGMLRVCNTIEIEVIFGYSWLEFAVIGWQRDCESSEDVLSTLSALSA-ELDISNLFE- 1223 (1267)
Q Consensus 1150 gk~~~----kq~tI~rlP~VLtIhLKRFeh~~~~~~~f~~~~~~~~v~~w~~~~~s~~dIs~tl~~~~~-~LDLs~ly~- 1223 (1267)
+.... ++.+|+++|+||+||||||.. .-+|.+...... .|+. ..|+.+.+.
T Consensus 524 ~~~~~~~~lK~~~i~~lp~iLiihL~Rf~~----------------~~~~~~k~~~~v-------~~~~~~~~~~~~~~~ 580 (653)
T KOG1868|consen 524 KHKESSKTLKKLTILRLPKILIIHLKRFSS----------------DGNSFNKLSTGV-------DFPLREADLSPRFAE 580 (653)
T ss_pred cCcccccccceeeeecCCHHHHHHHHHhcc----------------Ccccccccceee-------ccchHhhhhchhccc
Confidence 87743 567899999999999999962 112444433222 2332 245555232
Q ss_pred CCCCCCeEEEEEEEEEec--CCCcEEEEEEecCCCcEEEecCCCCC
Q 037237 1224 GYPPDNIYFLASMVCVSS--DRQRYIIFVYNHMLEKYVQSDGATDE 1267 (1267)
Q Consensus 1224 g~d~~~~Y~L~aVVcH~G--~gGHYicfvr~~~~g~W~~fDDs~V~ 1267 (1267)
..+....|.|||||||+| +||||||||+....+.||.|||+.|.
T Consensus 581 ~~~~~~~Y~L~aVv~H~Gtl~sGHYta~~~~~~~~~W~~fdDs~Vs 626 (653)
T KOG1868|consen 581 KGNNPKSYRLYAVVNHSGTLNSGHYTAYVYKNEKQRWFTFDDSEVS 626 (653)
T ss_pred cCCCccceeeEEEEeccCcccCCceEEEEeecCCCceEEecCeeee
Confidence 223445699999999999 99999999986567999999999884
No 21
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.97 E-value=5.4e-31 Score=283.98 Aligned_cols=178 Identities=18% Similarity=0.285 Sum_probs=136.5
Q ss_pred hccchHHHHHHHHHHHhhhccCCCCCcCCcccccCCCCCCCCCchheeeeeeEeEeEEecCCCCCcccc-cccccceeec
Q 037237 1036 KMNDSSELLQAILESLHESFDTVNCDFQSQDEYEGSLDCSSAGCFVHIIFGMDHYEKVNCVKCSAKFGY-RKYTSLFLTL 1114 (1267)
Q Consensus 1036 ~QqDAhEfL~~LLd~LH~s~~~~~~~~es~e~~~~s~~~~~~~CIIHqLFGg~LrSqV~C~~Cg~~S~t-~pf~~l~l~I 1114 (1267)
.||||+||+.+||+.||. ++.++|+|.+.++++|..|++.+.. ++|..+.++|
T Consensus 21 ~QqDa~Ef~~~ll~~l~~--------------------------~i~~~F~~~~~~~~~C~~C~~~~~~~e~~~~l~l~i 74 (230)
T cd02674 21 DQQDAQEFLLFLLDGLHS--------------------------IIVDLFQGQLKSRLTCLTCGKTSTTFEPFTYLSLPI 74 (230)
T ss_pred hhhhHHHHHHHHHHHHhh--------------------------hHHheeCCEEeCcEEcCCCcCCcceecceeEEEEec
Confidence 589999999999999992 4678999999999999999999987 6788888777
Q ss_pred cchhccccccCCCCCcHHHHHHHhc------cCCcccCCcCCCccc--eehccccCCcEEEEEeeccccchhhhhhhccc
Q 037237 1115 NAYNLRNMKKTPRGSSFDVLLKQLV------LNGLLNCGACGQINY--IHHTLWRLPHVFTIGMLRVCNTIEIEVIFGYS 1186 (1267)
Q Consensus 1115 ~as~l~~~k~~~~~~SF~~lLk~~~------~~~~~~C~~Cgk~~~--kq~tI~rlP~VLtIhLKRFeh~~~~~~~f~~~ 1186 (1267)
+..... .+..++.++|+.+. ..+.+.|++|++... ++..|.++|+||+|||+||..
T Consensus 75 p~~~~~-----~~~~sl~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~iLii~l~R~~~----------- 138 (230)
T cd02674 75 PSGSGD-----APKVTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSF----------- 138 (230)
T ss_pred ccccCC-----CCCCCHHHHHHHhcCccccCCCCceeCCCCCCccceEEEEEEecCChhhEeEhhheec-----------
Confidence 653211 12368999987642 345799999998865 567789999999999999961
Q ss_pred ccceeeecccCCCCcchhhhhhhhcccc-cccCCcccCC--CCCCCeEEEEEEEEEec--CCCcEEEEEEecCCCcEEEe
Q 037237 1187 WLEFAVIGWQRDCESSEDVLSTLSALSA-ELDISNLFEG--YPPDNIYFLASMVCVSS--DRQRYIIFVYNHMLEKYVQS 1261 (1267)
Q Consensus 1187 ~~~~~v~~w~~~~~s~~dIs~tl~~~~~-~LDLs~ly~g--~d~~~~Y~L~aVVcH~G--~gGHYicfvr~~~~g~W~~f 1261 (1267)
......+. .+.+.||. .||++++... .....+|+|+|||+|.| ++|||+||+|...+++||+|
T Consensus 139 ---------~~~~~~K~---~~~v~~~~~~l~l~~~~~~~~~~~~~~Y~L~~vI~H~G~~~~GHY~~~~~~~~~~~W~~f 206 (230)
T cd02674 139 ---------SRGSTRKL---TTPVTFPLNDLDLTPYVDTRSFTGPFKYDLYAVVNHYGSLNGGHYTAYCKNNETNDWYKF 206 (230)
T ss_pred ---------CCCCcccC---CceEeccccccccccccCcccCCCCceEEEEEEEEeeCCCCCcEEEEEEECCCCCceEEE
Confidence 11111111 12246774 5888875432 23567999999999999 78999999996555999999
Q ss_pred cCCCCC
Q 037237 1262 DGATDE 1267 (1267)
Q Consensus 1262 DDs~V~ 1267 (1267)
||+.|+
T Consensus 207 nD~~V~ 212 (230)
T cd02674 207 DDSRVT 212 (230)
T ss_pred cCCeEE
Confidence 999874
No 22
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.97 E-value=1.5e-30 Score=299.56 Aligned_cols=280 Identities=11% Similarity=0.151 Sum_probs=181.3
Q ss_pred hhhccCCCCCCcchHHHHHHHhhCcHHHHHHHhccCccc----------cCCC----------CCCcHHHHHHHHHHHHh
Q 037237 942 EYWRQFENGTTDSFVNMIVKSLWHLREFREEFMRRRQTI----------HNHI----------GDPCIVCALYDMFAALS 1001 (1267)
Q Consensus 942 ~~gL~N~~GgNTCFLNSILQcL~H~p~fRe~fLs~~~~~----------h~~~----------~~~CV~CAL~~LFsal~ 1001 (1267)
++||.|. ||||||||+||+|.++|+||+++++..... .... ...|++++|+.+|..|.
T Consensus 1 PvGL~Nl--GNTCYmNSlLQ~L~~i~~lR~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~LF~~l~ 78 (343)
T cd02666 1 PAGLDNI--GNTCYLNSLLQYFFTIKPLRDLVLNFDESKAELASDYPTERRIGGREVSRSELQRSNQFVYELRSLFNDLI 78 (343)
T ss_pred CCCcccC--CceeHHHHHHHHHHccHHHHHHHHcCCccccccccccccccccCccccchhhhhhHHHHHHHHHHHHHHHH
Confidence 4799997 999999999999999999999999743110 0000 01278999999999998
Q ss_pred cccCCCCccccccchHHHHHHHhcccchHHHhhhhccchHHHHHHHHHHHhhhccCCCCCcCCcccccCCCCCCCCCchh
Q 037237 1002 TACEDNQVEVPSAPSSLRVALTTYSYDKNICKQAKMNDSSELLQAILESLHESFDTVNCDFQSQDEYEGSLDCSSAGCFV 1081 (1267)
Q Consensus 1002 ~ss~~~~~e~~vsPs~Lr~aLs~i~~ds~~F~~g~QqDAhEfL~~LLd~LH~s~~~~~~~~es~e~~~~s~~~~~~~CII 1081 (1267)
.+.. . ++.|+.+...|+. .||||+||+..+|+.||..+..........+ ........++|
T Consensus 79 ~s~~----~-~v~P~~~l~~l~~-----------~QQDa~Ef~~~lld~Le~~lk~~~~~~~~~~----~~~~~~~~~~I 138 (343)
T cd02666 79 HSNT----R-SVTPSKELAYLAL-----------RQQDVTECIDNVLFQLEVALEPISNAFAGPD----TEDDKEQSDLI 138 (343)
T ss_pred hCCC----C-ccCcHHHHHhccc-----------cccchHHHHHHHHHHHHHHhcCccccccCcc----cccccchhhhh
Confidence 6542 2 7999988665532 6999999999999999999875321000000 01112457899
Q ss_pred eeeeeeEeEeEEecCCCC---Ccccc-cccccceeeccchhccccccCCCCCcHHHHHHHhccCCcccCCcCCCccceeh
Q 037237 1082 HIIFGMDHYEKVNCVKCS---AKFGY-RKYTSLFLTLNAYNLRNMKKTPRGSSFDVLLKQLVLNGLLNCGACGQINYIHH 1157 (1267)
Q Consensus 1082 HqLFGg~LrSqV~C~~Cg---~~S~t-~pf~~l~l~I~as~l~~~k~~~~~~SF~~lLk~~~~~~~~~C~~Cgk~~~kq~ 1157 (1267)
+++|+|.++++++|..|+ ..+.+ ++|.++.++|......... .....++.+.|+.+...+.
T Consensus 139 ~~lF~G~~~~~i~c~~~~~~~~~s~~~E~F~~L~l~I~~~~~~~~~-~~~~~~L~d~L~~~~~~e~-------------- 203 (343)
T cd02666 139 KRLFSGKTKQQLVPESMGNQPSVRTKTERFLSLLVDVGKKGREIVV-LLEPKDLYDALDRYFDYDS-------------- 203 (343)
T ss_pred hHhceeeEEEEEEecccCCCCCCccccceeEEEEEecCcccccccc-cCCCCCHHHHHHHhcChhh--------------
Confidence 999999999999999997 56655 7898888777642111100 0122568888877643332
Q ss_pred ccccCCcEEEEEeeccccchhhhhhhcccccceeeecccCCCCcchhhhh-hhhccccc-------c-----cCCcccCC
Q 037237 1158 TLWRLPHVFTIGMLRVCNTIEIEVIFGYSWLEFAVIGWQRDCESSEDVLS-TLSALSAE-------L-----DISNLFEG 1224 (1267)
Q Consensus 1158 tI~rlP~VLtIhLKRFeh~~~~~~~f~~~~~~~~v~~w~~~~~s~~dIs~-tl~~~~~~-------L-----DLs~ly~g 1224 (1267)
|.++|+||.|||| +++ ++|+...-+-+++ ..........+.. ....+... + .++..|..
T Consensus 204 -~~~~P~vl~~qlq-~~~-~~~~~~~~~dry~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 275 (343)
T cd02666 204 -LTKLPQRSQVQAQ-LAQ-PLQRELISMDRYE-----LPSSIDDIDELIREAIQSESSLVRQAQNELAELKHEIEKQFDD 275 (343)
T ss_pred -hccCCHHHHHHHh-hcc-cccchheeecccc-----ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 8999999999998 443 1111111111111 1111000000000 00000000 0 01112221
Q ss_pred CCCCCeEEEEEEEEEec--CCCcEEEEEEecCCCcEEEecCCCCC
Q 037237 1225 YPPDNIYFLASMVCVSS--DRQRYIIFVYNHMLEKYVQSDGATDE 1267 (1267)
Q Consensus 1225 ~d~~~~Y~L~aVVcH~G--~gGHYicfvr~~~~g~W~~fDDs~V~ 1267 (1267)
..+..|+|+|||+|.| ++|||++|+|+..++.||+|||..|+
T Consensus 276 -~~~~~Y~L~avv~H~G~~~~GHY~~~~~~~~~~~W~~~dD~~V~ 319 (343)
T cd02666 276 -LKSYGYRLHAVFIHRGEASSGHYWVYIKDFEENVWRKYNDETVT 319 (343)
T ss_pred -cCCCceEEEEEEEeecCCCCCeEEEEEEECCCCeEEEEECCeeE
Confidence 2457899999999999 89999999998777999999999985
No 23
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.95 E-value=7.6e-28 Score=254.98 Aligned_cols=194 Identities=22% Similarity=0.282 Sum_probs=136.7
Q ss_pred hccchHHHHHHHHHHHhhhccCCCCCcCCcccccCCCCCCCCCchheeeeeeEeEeEEecCCCCCcccc-cccccceeec
Q 037237 1036 KMNDSSELLQAILESLHESFDTVNCDFQSQDEYEGSLDCSSAGCFVHIIFGMDHYEKVNCVKCSAKFGY-RKYTSLFLTL 1114 (1267)
Q Consensus 1036 ~QqDAhEfL~~LLd~LH~s~~~~~~~~es~e~~~~s~~~~~~~CIIHqLFGg~LrSqV~C~~Cg~~S~t-~pf~~l~l~I 1114 (1267)
.||||+|||..+|+.||..+...... ........++++++|+|.+.+++.|..|+..+.. ..+..+.+.+
T Consensus 21 ~q~Da~E~l~~ll~~l~~~~~~~~~~---------~~~~~~~~~~i~~~F~~~~~~~~~c~~c~~~~~~~~~~~~l~l~~ 91 (255)
T cd02257 21 EQQDAHEFLLFLLDKLHEELKKSSKR---------TSDSSSLKSLIHDLFGGKLESTIVCLECGHESVSTEPELFLSLPL 91 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc---------ccccccCCchhhhhcccEEeeEEECCCCCCCccCcccceeEEeec
Confidence 68999999999999999987642100 0122234679999999999999999999977655 3333344444
Q ss_pred cchhccccccCCCCCcHHHHHHHhc---cCCcccCCcCC--Ccc--ceehccccCCcEEEEEeeccccchhhhhhhcccc
Q 037237 1115 NAYNLRNMKKTPRGSSFDVLLKQLV---LNGLLNCGACG--QIN--YIHHTLWRLPHVFTIGMLRVCNTIEIEVIFGYSW 1187 (1267)
Q Consensus 1115 ~as~l~~~k~~~~~~SF~~lLk~~~---~~~~~~C~~Cg--k~~--~kq~tI~rlP~VLtIhLKRFeh~~~~~~~f~~~~ 1187 (1267)
+.... ...+|.++|+... ....+.|..|+ +.. .++..|.++|+||+|||+||...
T Consensus 92 ~~~~~-------~~~~l~~~l~~~~~~e~~~~~~~~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~----------- 153 (255)
T cd02257 92 PVKGL-------PQVSLEDCLEKFFKEEILEGDNCYKCEKKKKQEATKRLKIKKLPPVLIIHLKRFSFN----------- 153 (255)
T ss_pred cCCCC-------CCCcHHHHHHHhhhhhccCCCCcccCCCCcccceeEEEecccCCceeEEEeeceeec-----------
Confidence 43110 1367999987754 23457788887 233 26788999999999999999610
Q ss_pred cceeeecccCCCCcchhhhhhhhcccccccCCcccC-------CCCCCCeEEEEEEEEEec---CCCcEEEEEEecCCCc
Q 037237 1188 LEFAVIGWQRDCESSEDVLSTLSALSAELDISNLFE-------GYPPDNIYFLASMVCVSS---DRQRYIIFVYNHMLEK 1257 (1267)
Q Consensus 1188 ~~~~v~~w~~~~~s~~dIs~tl~~~~~~LDLs~ly~-------g~d~~~~Y~L~aVVcH~G---~gGHYicfvr~~~~g~ 1257 (1267)
-.|... +. ...+.++..+++..++. +......|+|+|||+|.| ++|||+||+|+..+++
T Consensus 154 -----~~~~~~---k~---~~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~Y~L~~vi~h~G~~~~~GHY~~~~~~~~~~~ 222 (255)
T cd02257 154 -----EDGTKE---KL---NTKVSFPLELDLSPYLSEGEKDSDSDNGSYKYELVAVVVHSGTSADSGHYVAYVKDPSDGK 222 (255)
T ss_pred -----cccccc---cC---CCeEeCCCcccCccccccccccccccCCCccEEEEEEEEEecCCCCCcCeEEEEeCCCCCc
Confidence 001111 11 12256788888877653 223457999999999998 6899999999765599
Q ss_pred EEEecCCCCC
Q 037237 1258 YVQSDGATDE 1267 (1267)
Q Consensus 1258 W~~fDDs~V~ 1267 (1267)
||+|||..|+
T Consensus 223 W~~~nD~~V~ 232 (255)
T cd02257 223 WYKFNDDKVT 232 (255)
T ss_pred eEEEeccccE
Confidence 9999999985
No 24
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.95 E-value=3.4e-28 Score=268.51 Aligned_cols=202 Identities=13% Similarity=0.133 Sum_probs=140.9
Q ss_pred HHHHHhcccchHHHhhhhccchHHHHHHHHHHHhhhccCCCCCcCCcccccCCCCCCCCCchheeeeeeEeEeEEecCCC
Q 037237 1019 RVALTTYSYDKNICKQAKMNDSSELLQAILESLHESFDTVNCDFQSQDEYEGSLDCSSAGCFVHIIFGMDHYEKVNCVKC 1098 (1267)
Q Consensus 1019 r~aLs~i~~ds~~F~~g~QqDAhEfL~~LLd~LH~s~~~~~~~~es~e~~~~s~~~~~~~CIIHqLFGg~LrSqV~C~~C 1098 (1267)
..+|+++......|..++||||||||.+||+.||+.+.......... .. ....+.++++|++.+.++++|..|
T Consensus 15 ~~~~~~i~~~~~~F~~~~QQDAhEFL~~LLd~l~~~~~~~~~~~~~~------~~-~~~~~~~~~~F~~~l~s~i~C~~C 87 (245)
T cd02673 15 MQALSSIGKINTEFDNDDQQDAHEFLLTLLEAIDDIMQVNRTNVPPS------NI-EIKRLNPLEAFKYTIESSYVCIGC 87 (245)
T ss_pred HHHHHHHhhhhhhcCCCchhhHHHHHHHHHHHHHHHHHhhcccCCCC------cc-cccccCHhHheeeEEEeEEEecCC
Confidence 34566655555599999999999999999999998664311000000 00 011234578999999999999999
Q ss_pred CCcccc-cccccceeeccchhccccccCCCCCcHHHHHHHhc--cCCcccCCcCCCccc-eehccccCCcEEEEEeeccc
Q 037237 1099 SAKFGY-RKYTSLFLTLNAYNLRNMKKTPRGSSFDVLLKQLV--LNGLLNCGACGQINY-IHHTLWRLPHVFTIGMLRVC 1174 (1267)
Q Consensus 1099 g~~S~t-~pf~~l~l~I~as~l~~~k~~~~~~SF~~lLk~~~--~~~~~~C~~Cgk~~~-kq~tI~rlP~VLtIhLKRFe 1174 (1267)
|++|.+ ++|.++.++|+.. ...+++.++..+. ....+.|++|++... ++..|.++|+||+||||||+
T Consensus 88 ~~~s~~~e~~~~L~L~i~~~---------~~~~le~l~~~~~~~~~~e~~C~~C~~~~a~k~~~i~~~P~vL~i~lkRf~ 158 (245)
T cd02673 88 SFEENVSDVGNFLDVSMIDN---------KLDIDELLISNFKTWSPIEKDCSSCKCESAISSERIMTFPECLSINLKRYK 158 (245)
T ss_pred CCeeeeccccceeccccccC---------CcchHHHHHHHhhcccccCccCCCCCCccceeechhhhCChhhEEeeEeee
Confidence 999988 6777766665531 1235667665543 233689999997754 56779999999999999996
Q ss_pred cchhhhhhhcccccceeeecccCCCCcchhhhhhhhcccccccCCcccCCCCCCCeEEEEEEEEEec---CCCcEEEEEE
Q 037237 1175 NTIEIEVIFGYSWLEFAVIGWQRDCESSEDVLSTLSALSAELDISNLFEGYPPDNIYFLASMVCVSS---DRQRYIIFVY 1251 (1267)
Q Consensus 1175 h~~~~~~~f~~~~~~~~v~~w~~~~~s~~dIs~tl~~~~~~LDLs~ly~g~d~~~~Y~L~aVVcH~G---~gGHYicfvr 1251 (1267)
. .... ...+ .+ ..+++.++.. .+..|+|+|||+|.| ++|||+||+|
T Consensus 159 ~--------------------~~~~--~~~~-----~~-~~~~~~~~~~---~~~~Y~L~~VV~H~G~~~~~GHY~a~vk 207 (245)
T cd02673 159 L--------------------RIAT--SDYL-----KK-NEEIMKKYCG---TDAKYSLVAVICHLGESPYDGHYIAYTK 207 (245)
T ss_pred e--------------------cccc--cccc-----cc-cccccccccC---CCceEEEEEEEEECCCCCCCceEEEEEE
Confidence 2 1110 0000 11 1244555332 456899999999998 7899999999
Q ss_pred ecC-CCcEEEecCCCCC
Q 037237 1252 NHM-LEKYVQSDGATDE 1267 (1267)
Q Consensus 1252 ~~~-~g~W~~fDDs~V~ 1267 (1267)
... +|+||.|||+.|+
T Consensus 208 ~~~~~~~Wy~fnD~~V~ 224 (245)
T cd02673 208 ELYNGSSWLYCSDDEIR 224 (245)
T ss_pred cCCCCCeEEEeeCceee
Confidence 765 7899999999985
No 25
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=99.95 E-value=6.5e-27 Score=263.88 Aligned_cols=276 Identities=17% Similarity=0.213 Sum_probs=202.3
Q ss_pred hhccCCCCCCcchHHHHHHHhhCcHHHHHHHhccCccccCCCCCCcHHHHHHHHHHHHh-cccCCCCccccccchHHHHH
Q 037237 943 YWRQFENGTTDSFVNMIVKSLWHLREFREEFMRRRQTIHNHIGDPCIVCALYDMFAALS-TACEDNQVEVPSAPSSLRVA 1021 (1267)
Q Consensus 943 ~gL~N~~GgNTCFLNSILQcL~H~p~fRe~fLs~~~~~h~~~~~~CV~CAL~~LFsal~-~ss~~~~~e~~vsPs~Lr~a 1021 (1267)
+||+| .++|||+|++||+|.++|++|+.++++. .|..+.|+.|+|+.+|.+|. .+.+ .++.+++|.++
T Consensus 1 ~GlEn--~~~nsY~NslLQ~l~f~~~~r~~~l~h~----~c~~e~cL~cELgfLf~ml~~~~~g-----~~cq~sNflr~ 69 (295)
T PF13423_consen 1 SGLEN--HIPNSYCNSLLQVLYFIPPLRNFLLSHL----ECPKEFCLLCELGFLFDMLDSKAKG-----INCQASNFLRA 69 (295)
T ss_pred CCCcC--CCCcchHHHHHHHHHhCHHHHHHHHhCc----CCCccccHHHHHHHHHHHhhhhcCC-----CcChHHHHHHH
Confidence 48888 5889999999999999999999999842 28888899999999999999 6433 27899999999
Q ss_pred HHhcccchHHHhhhhccchHHHHHHHHHHHhhhccCCCCCcCCcccccCCCCCCCCCchheeeeeeEeEeEEecCCCCCc
Q 037237 1022 LTTYSYDKNICKQAKMNDSSELLQAILESLHESFDTVNCDFQSQDEYEGSLDCSSAGCFVHIIFGMDHYEKVNCVKCSAK 1101 (1267)
Q Consensus 1022 Ls~i~~ds~~F~~g~QqDAhEfL~~LLd~LH~s~~~~~~~~es~e~~~~s~~~~~~~CIIHqLFGg~LrSqV~C~~Cg~~ 1101 (1267)
|+.+.. ....|.++|.++++++||+.||..+.....+..... ..........|.++||......++|..||+.
T Consensus 70 l~~~~~---a~~l~~~~~iq~~~~Fll~~l~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~f~~~~~~~~~c~~c~~~ 142 (295)
T PF13423_consen 70 LSWIPE---AAALGLQQDIQSLNRFLLEQLSMELLTFKPDIFHTS----ENSSSSPESSISQLFGTSFETTIRCTSCGHE 142 (295)
T ss_pred HhcCHH---HHhcchhHHHHHHHHHHHHHHhHHHHhcCccccccc----ccccCCCcchHHHHhCcceeeeecccccCCe
Confidence 998853 456677999999999999999999865332110000 0111234568999999999999999999999
Q ss_pred ccccccccceeeccchhccccccCCCCCcHHHHHHHhc---cCCcccCCcCCCccc--eehccccCCcEEEEEeeccccc
Q 037237 1102 FGYRKYTSLFLTLNAYNLRNMKKTPRGSSFDVLLKQLV---LNGLLNCGACGQINY--IHHTLWRLPHVFTIGMLRVCNT 1176 (1267)
Q Consensus 1102 S~t~pf~~l~l~I~as~l~~~k~~~~~~SF~~lLk~~~---~~~~~~C~~Cgk~~~--kq~tI~rlP~VLtIhLKRFeh~ 1176 (1267)
+... +..+.+++..... ....+|.++|+..- ......|+.|++... .+.+|.++|+||+|.++|....
T Consensus 143 ~~~~---~~~~~~~l~yp~~----~~~~tf~~~Le~sl~~e~~~~a~C~~C~~~~~~~~~r~i~~LPpVL~In~~~~~~~ 215 (295)
T PF13423_consen 143 SVKE---SSTLVLDLPYPPS----NSNVTFSQVLEHSLNREQQTRAWCEKCNKYQPTEQRRTIRSLPPVLSINLNRYSEE 215 (295)
T ss_pred EEee---cceeeeeccCCCC----CccchHHHHHHHHHhhcccccccccccccccceeeeeeccCCCcEEEEEccCCCcc
Confidence 8652 1222333322221 12368999998752 345678999998865 4678999999999999998732
Q ss_pred hhhhhhhcccccceeeecccCCCCcchhhhhhhhcccccccCCcccCC--------CCCCCeEEEEEEEEEec---CCCc
Q 037237 1177 IEIEVIFGYSWLEFAVIGWQRDCESSEDVLSTLSALSAELDISNLFEG--------YPPDNIYFLASMVCVSS---DRQR 1245 (1267)
Q Consensus 1177 ~~~~~~f~~~~~~~~v~~w~~~~~s~~dIs~tl~~~~~~LDLs~ly~g--------~d~~~~Y~L~aVVcH~G---~gGH 1245 (1267)
. .|........ .||..++++.+... .....+|.|.|+|||.| ++||
T Consensus 216 ---------------~-~w~~~~~~~~-------~ip~~i~~~~~~~~~~~~~~~~~~~~~~Y~L~~~V~~i~~~~~~~H 272 (295)
T PF13423_consen 216 ---------------E-FWPKKNWLKI-------WIPPSINLPHFIADDSQSDLEGESGIFKYELRSMVCHIGDSIESGH 272 (295)
T ss_pred ---------------c-ccccccCCce-------ecceeeeccccccccccccccCCCCceEEEEEEEEEEecCCCCCCc
Confidence 1 1533322222 34555655543311 12346999999999998 7899
Q ss_pred EEEEEEecC--CCcEEEecCCCC
Q 037237 1246 YIIFVYNHM--LEKYVQSDGATD 1266 (1267)
Q Consensus 1246 Yicfvr~~~--~g~W~~fDDs~V 1266 (1267)
|++|+|-.. +.+||.|||--|
T Consensus 273 lVs~vrv~~~~~~~W~lFNDflV 295 (295)
T PF13423_consen 273 LVSLVRVGPSDDSQWYLFNDFLV 295 (295)
T ss_pred eEEEEEcCCCCCCcEEEECcEeC
Confidence 999999532 379999999765
No 26
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=99.95 E-value=2.3e-28 Score=236.62 Aligned_cols=105 Identities=32% Similarity=0.380 Sum_probs=99.0
Q ss_pred HHHHhHhhcCCHHHHHHHHHHHHhhCC---CCchhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchhhhHHH
Q 037237 54 LRALSAFQSGDSKKALEMIKESISSHQ---DSPHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLVELSFL 130 (1267)
Q Consensus 54 ~~a~~~~~~Gnh~kAL~~~kd~~~~h~---~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~~~a~f 130 (1267)
++|+++|+||||+|||+||||+|++|+ ++|++|++||+||+++|++|+|| |+|++||.+ ||+||..++.++.+
T Consensus 1 e~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~-d~k~~yLl~---sve~~s~a~~Lsp~ 76 (111)
T PF04781_consen 1 EKAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENP-DVKFRYLLG---SVECFSRAVELSPD 76 (111)
T ss_pred ChHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCc-hHHHHHHHH---hHHHHHHHhccChh
Confidence 589999999999999999999999995 45699999999999999999999 999999888 88888888888888
Q ss_pred HHHHHHHHHhhhch--hHHHHHHHHHHHhccCCC
Q 037237 131 HAALLYKLAEINDK--EWDVVIEACERMLKIGDP 162 (1267)
Q Consensus 131 ~A~lL~~la~~~~~--~Y~~a~~ec~RaL~i~~P 162 (1267)
+|++||+||++|++ +|++||++|+|||+|++|
T Consensus 77 ~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~~p 110 (111)
T PF04781_consen 77 SAHSLFELASQLGSVKYYKKAVKKAKRGLSVTNP 110 (111)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhcccCC
Confidence 89999999999966 999999999999999999
No 27
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.95 E-value=5.1e-28 Score=270.35 Aligned_cols=223 Identities=18% Similarity=0.208 Sum_probs=158.7
Q ss_pred hhccCCCCCCcchHHHHHHHhhCcHHHHHHHhccCccccCCCCCCcHHHHHHHHHHHHhcccCCCCccccccchHHHHHH
Q 037237 943 YWRQFENGTTDSFVNMIVKSLWHLREFREEFMRRRQTIHNHIGDPCIVCALYDMFAALSTACEDNQVEVPSAPSSLRVAL 1022 (1267)
Q Consensus 943 ~gL~N~~GgNTCFLNSILQcL~H~p~fRe~fLs~~~~~h~~~~~~CV~CAL~~LFsal~~ss~~~~~e~~vsPs~Lr~aL 1022 (1267)
+||+|. +.|||+|++||+|.++|+||+. +. +..+.|..+.|++|+|+.+|+.+
T Consensus 16 ~gl~~~--~~~~y~n~~lq~~~~~~~~~~~-~~--~~~~~~~~~~~l~~el~~lfs~~---------------------- 68 (268)
T cd02672 16 AGLENH--ITNSYCNSLLQLLYFIPPFRNF-TA--IILVACPKESCLLCELGYLFSTL---------------------- 68 (268)
T ss_pred cccccC--CccchHHHHHHHHHhcHHHHHH-HH--hhcccCCcCccHHHHHHHHHHHH----------------------
Confidence 688884 9999999999999999999998 43 23466888889999999999110
Q ss_pred HhcccchHHHhhhhccchHHHHHHHHHHHhhhccCCCCCcCCcccccCCCCCCCCCchheeeeeeEeEeEEecCCCCCcc
Q 037237 1023 TTYSYDKNICKQAKMNDSSELLQAILESLHESFDTVNCDFQSQDEYEGSLDCSSAGCFVHIIFGMDHYEKVNCVKCSAKF 1102 (1267)
Q Consensus 1023 s~i~~ds~~F~~g~QqDAhEfL~~LLd~LH~s~~~~~~~~es~e~~~~s~~~~~~~CIIHqLFGg~LrSqV~C~~Cg~~S 1102 (1267)
.+-|-.++++.++..... .+ ..||+++
T Consensus 69 -----------------iq~F~~fll~~i~~~~~~--------------------------~~----------~~C~~~s 95 (268)
T cd02672 69 -----------------IQNFTRFLLETISQDQLG--------------------------TP----------FSCGTSR 95 (268)
T ss_pred -----------------HHHHHHHHHHHHHHHhcc--------------------------cC----------CCCCcee
Confidence 122556777777764321 00 5789998
Q ss_pred cc-cccccceeeccchhccccccCCCCCcHHHHHHHhc---cCCcccCCcCCCccc--eehccccCCc----EEEEEeec
Q 037237 1103 GY-RKYTSLFLTLNAYNLRNMKKTPRGSSFDVLLKQLV---LNGLLNCGACGQINY--IHHTLWRLPH----VFTIGMLR 1172 (1267)
Q Consensus 1103 ~t-~pf~~l~l~I~as~l~~~k~~~~~~SF~~lLk~~~---~~~~~~C~~Cgk~~~--kq~tI~rlP~----VLtIhLKR 1172 (1267)
.+ .++.+++++++... .....+|.++|+.+. ..+++.|+.|++.+. ++.+|+++|+ ||+|||||
T Consensus 96 ~~~~~~~~LsLpip~~~------~~~~~sl~~cL~~~~~~E~~~~~~C~~C~~~~~a~k~~~i~~lP~~L~~VL~i~lkr 169 (268)
T cd02672 96 NSVSLLYTLSLPLGSTK------TSKESTFLQLLKRSLDLEKVTKAWCDTCCKYQPLEQTTSIRHLPDILLLVLVINLSV 169 (268)
T ss_pred eccccceeeeeecCccc------cccCCCHHHHHHHHhhhhhcccccccccCcccccEEEEEeecCCCcccceEEEEEec
Confidence 87 68888888877532 112368999998864 345789999998865 6889999999 99999999
Q ss_pred cccchhhhhhhcccccceeeecccCCCCcchhhhhhhhcccccccCCcccC-CCCCCCeEEEEEEEEEec---CCCcEEE
Q 037237 1173 VCNTIEIEVIFGYSWLEFAVIGWQRDCESSEDVLSTLSALSAELDISNLFE-GYPPDNIYFLASMVCVSS---DRQRYII 1248 (1267)
Q Consensus 1173 Feh~~~~~~~f~~~~~~~~v~~w~~~~~s~~dIs~tl~~~~~~LDLs~ly~-g~d~~~~Y~L~aVVcH~G---~gGHYic 1248 (1267)
|++. +. . -|... .........+.++..+|+..... +.....+|+|+|||+|.| ++|||+|
T Consensus 170 f~~~------~~-------~-~~~~~--~~~~~~~~~v~f~~~~~~~~~~~~~~~~~~~Y~L~gvV~hig~~~~~GHyva 233 (268)
T cd02672 170 TNGE------FD-------D-INVVL--PSGKVMQNKVSPKAIDHDKLVKNRGQESIYKYELVGYVCEINDSSRGQHNVV 233 (268)
T ss_pred cChh------hc-------c-cCcce--eEEEecCCeecccccccchhhhccCCCCCceEEEEEEEEEecCCCCCCcEEE
Confidence 9731 00 1 12100 00001122345666665554332 323457999999999997 6899999
Q ss_pred EEEecC----CCcEEEecCCCCC
Q 037237 1249 FVYNHM----LEKYVQSDGATDE 1267 (1267)
Q Consensus 1249 fvr~~~----~g~W~~fDDs~V~ 1267 (1267)
|+|... .++||.|||..|+
T Consensus 234 ~vk~~~~~~~~~~WylFND~~V~ 256 (268)
T cd02672 234 FVIKVNEESTHGRWYLFNDFLVT 256 (268)
T ss_pred EEEccCCCCCCCcEEEecCeEEE
Confidence 999643 6899999999884
No 28
>KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.5e-28 Score=287.99 Aligned_cols=268 Identities=18% Similarity=0.301 Sum_probs=201.9
Q ss_pred hhccCCCCCCcchHHHHHHHhhCcHHHHHHHhccCcc---ccCCCCCCcHHHHHHHHHHHHhcccCCCCccccccchHHH
Q 037237 943 YWRQFENGTTDSFVNMIVKSLWHLREFREEFMRRRQT---IHNHIGDPCIVCALYDMFAALSTACEDNQVEVPSAPSSLR 1019 (1267)
Q Consensus 943 ~gL~N~~GgNTCFLNSILQcL~H~p~fRe~fLs~~~~---~h~~~~~~CV~CAL~~LFsal~~ss~~~~~e~~vsPs~Lr 1019 (1267)
.||.| +|+|||||+++|=|.|+|.+|...+.-.+. +... ++.-++|.|+.+|..+..+.- + .+.|..|-
T Consensus 96 VGLKN--agatcyMNav~QQlymIP~Lrh~ll~~~~~td~pd~s-~~e~vl~~lQ~iF~hL~~s~l----Q-yyVPeg~W 167 (944)
T KOG1866|consen 96 VGLKN--AGATCYMNAVIQQLYMIPGLRHLLLAFVGTTDLPDMS-GDEKVLRHLQVIFGHLAASQL----Q-YYVPEGFW 167 (944)
T ss_pred eeecC--CCchHHHhhhhhhhhhcccccchhhhhcccccchhhc-chHHHHHHHHHHHHHHHHHhh----h-hhcchhHH
Confidence 78999 599999999999999999999988764332 1111 222499999999999886532 3 67788765
Q ss_pred HHHHhcccchHHHhhhhccchHHHHHHHHHHHhhhccCCCCCcCCcccccCCCCCCCCCchheeeeeeEeEeEEecCCCC
Q 037237 1020 VALTTYSYDKNICKQAKMNDSSELLQAILESLHESFDTVNCDFQSQDEYEGSLDCSSAGCFVHIIFGMDHYEKVNCVKCS 1099 (1267)
Q Consensus 1020 ~aLs~i~~ds~~F~~g~QqDAhEfL~~LLd~LH~s~~~~~~~~es~e~~~~s~~~~~~~CIIHqLFGg~LrSqV~C~~Cg 1099 (1267)
..+..... -...-+||||-|||..|||.|.+.+...+ ..-+....|||....+..|..|-
T Consensus 168 k~Fr~~~~---pln~reqhDA~eFf~sLld~~De~LKklg-----------------~p~lf~n~f~G~ysdqKIC~~Cp 227 (944)
T KOG1866|consen 168 KQFRLWGE---PLNLREQHDALEFFNSLLDSLDEALKKLG-----------------HPQLFSNTFGGSYSDQKICQGCP 227 (944)
T ss_pred HHhhccCC---ccchHhhhhHHHHHHHHHHHHHHHHHHhC-----------------CcHHHHHHhcCccchhhhhccCC
Confidence 55543321 11234699999999999999999886533 12366778999999999999999
Q ss_pred Ccccc-cccccceeeccchhccccccCCCCCcHHHHHHH--hccCCcccCCcCCCccc--eehccccCCcEEEEEeeccc
Q 037237 1100 AKFGY-RKYTSLFLTLNAYNLRNMKKTPRGSSFDVLLKQ--LVLNGLLNCGACGQINY--IHHTLWRLPHVFTIGMLRVC 1174 (1267)
Q Consensus 1100 ~~S~t-~pf~~l~l~I~as~l~~~k~~~~~~SF~~lLk~--~~~~~~~~C~~Cgk~~~--kq~tI~rlP~VLtIhLKRFe 1174 (1267)
|.-.. ++|+.+.+.|..+.+. .|+++.++. +++.+.|.|++|.++.. ++..|.++|+||+||||||+
T Consensus 228 HRY~~eE~F~~l~l~i~~~nLe--------esLeqfv~gevlEG~nAYhCeKCdeK~~TvkRt~ik~LPsvl~IqLkRF~ 299 (944)
T KOG1866|consen 228 HRYECEESFTTLNLDIRHQNLE--------ESLEQFVKGEVLEGANAYHCEKCDEKVDTVKRTCIKKLPSVLAIQLKRFD 299 (944)
T ss_pred cccCccccceeeeeecccchHH--------HHHHHHHHHHHhcCcchhhhhhhhhhhHhHHHHHHhhCChhheehhhhcc
Confidence 98766 6888888776642211 245555543 34678999999988765 57779999999999999996
Q ss_pred cchhhhhhhcccccceeeecccCCCCcchhhhhhhhcccccccCCccc-CCC----------C-------CCCeEEEEEE
Q 037237 1175 NTIEIEVIFGYSWLEFAVIGWQRDCESSEDVLSTLSALSAELDISNLF-EGY----------P-------PDNIYFLASM 1236 (1267)
Q Consensus 1175 h~~~~~~~f~~~~~~~~v~~w~~~~~s~~dIs~tl~~~~~~LDLs~ly-~g~----------d-------~~~~Y~L~aV 1236 (1267)
++|.++..-+. .-+..||..|||.|+. .|. + ..++|+|+||
T Consensus 300 ------------------yD~e~~~~iK~---n~~frFP~~ldMePYtvsg~a~~e~~~~~~g~~~e~s~~t~~YeLvGV 358 (944)
T KOG1866|consen 300 ------------------YDWERECAIKF---NDYFRFPRELDMEPYTVSGVAKLEGENVESGQQLEQSAGTTKYELVGV 358 (944)
T ss_pred ------------------chhhhcccccc---chhcccchhhcCCceeehhhhhhccccCCcCcccccccCcceeEEEEE
Confidence 57888755432 2235799999999965 221 1 1368999999
Q ss_pred EEEec--CCCcEEEEEEe---cCCCcEEEecCCCCC
Q 037237 1237 VCVSS--DRQRYIIFVYN---HMLEKYVQSDGATDE 1267 (1267)
Q Consensus 1237 VcH~G--~gGHYicfvr~---~~~g~W~~fDDs~V~ 1267 (1267)
++|+| .+|||+.|+++ ..+++||+|||..|+
T Consensus 359 lvHSGqAsaGHYySfIk~rr~~~~~kWykfnD~~Vt 394 (944)
T KOG1866|consen 359 LVHSGQASAGHYYSFIKQRRGEDGNKWYKFNDGDVT 394 (944)
T ss_pred EEecccccCcchhhhhhhhccCCCCceEeccCcccc
Confidence 99999 99999999975 246899999999885
No 29
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.94 E-value=4.1e-27 Score=257.04 Aligned_cols=176 Identities=13% Similarity=0.162 Sum_probs=123.2
Q ss_pred hccchHHHHHHHHHHHhhhccCCCCCcCCcccccCCCCCCCCCchheeeeeeEeEeEEecCCCCCcccc-cccccceeec
Q 037237 1036 KMNDSSELLQAILESLHESFDTVNCDFQSQDEYEGSLDCSSAGCFVHIIFGMDHYEKVNCVKCSAKFGY-RKYTSLFLTL 1114 (1267)
Q Consensus 1036 ~QqDAhEfL~~LLd~LH~s~~~~~~~~es~e~~~~s~~~~~~~CIIHqLFGg~LrSqV~C~~Cg~~S~t-~pf~~l~l~I 1114 (1267)
.||||+||+..||+.||..+....... ........+|.++|+|.+.+++.| |+..|.+ ++|.++.++|
T Consensus 21 ~QQDa~Ef~~~Lld~Le~~l~~~~~~~---------~~~~~~~~~i~~lF~G~~~~~~~~--~~~~s~~~E~F~~L~l~i 89 (228)
T cd02665 21 QQQDVSEFTHLLLDWLEDAFQAAAEAI---------SPGEKSKNPMVQLFYGTFLTEGVL--EGKPFCNCETFGQYPLQV 89 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccc---------cccccccchHhhceEEEEEEEEEE--CCCcccccCccEEEEEEE
Confidence 479999999999999999885421000 011124568999999999988777 7777776 7888777665
Q ss_pred cchhccccccCCCCCcHHHHHHHhccCCc---ccCCcCCCccceehccccCCcEEEEEeeccccchhhhhhhccccccee
Q 037237 1115 NAYNLRNMKKTPRGSSFDVLLKQLVLNGL---LNCGACGQINYIHHTLWRLPHVFTIGMLRVCNTIEIEVIFGYSWLEFA 1191 (1267)
Q Consensus 1115 ~as~l~~~k~~~~~~SF~~lLk~~~~~~~---~~C~~Cgk~~~kq~tI~rlP~VLtIhLKRFeh~~~~~~~f~~~~~~~~ 1191 (1267)
.- ..++.++|+.+..... ..|..|.+ ..++..|.++|+||+||||||+
T Consensus 90 ~~-----------~~~L~e~L~~~~~ee~l~~~~~~~~~~-~~~~~~i~~lP~vL~i~LkRF~----------------- 140 (228)
T cd02665 90 NG-----------YGNLHECLEAAMFEGEVELLPSDHSVK-SGQERWFTELPPVLTFELSRFE----------------- 140 (228)
T ss_pred CC-----------CCCHHHHHHHhhhhcccccccccchhh-hhhhhhhhhCChhhEEEeEeeE-----------------
Confidence 42 1468888876532221 22332221 2356678999999999999996
Q ss_pred eecccCCCCcchhhhhhhhcccccccCCcccCCCCCCCeEEEEEEEEEec--CCCcEEEEEEecCCCcEEEecCCCCC
Q 037237 1192 VIGWQRDCESSEDVLSTLSALSAELDISNLFEGYPPDNIYFLASMVCVSS--DRQRYIIFVYNHMLEKYVQSDGATDE 1267 (1267)
Q Consensus 1192 v~~w~~~~~s~~dIs~tl~~~~~~LDLs~ly~g~d~~~~Y~L~aVVcH~G--~gGHYicfvr~~~~g~W~~fDDs~V~ 1267 (1267)
|......+ + .+.+.||..| ....|+|+|||+|.| ++|||+||+|...+++||.|||+.|+
T Consensus 141 ---~~~~~~~K--i-~~~v~FP~~l----------~~~~Y~L~aVi~H~G~~~~GHY~~~i~~~~~~~W~~fdD~~V~ 202 (228)
T cd02665 141 ---FNQGRPEK--I-HDKLEFPQII----------QQVPYELHAVLVHEGQANAGHYWAYIYKQSRQEWEKYNDISVT 202 (228)
T ss_pred ---EcCCccEE--C-CEEEEeeCcc----------CCceeEEEEEEEecCCCCCCEEEEEEEcCCCCEEEEEECCeeE
Confidence 22211112 2 1224555544 236899999999999 99999999996568999999999985
No 30
>KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=4.1e-25 Score=279.25 Aligned_cols=162 Identities=19% Similarity=0.214 Sum_probs=118.5
Q ss_pred hhccCCCCCCcchHHHHHHHhhCcHHHHHHHhccCccccCCCCC-----CcHHHHHHHHHHHHhcccCCCCccccccchH
Q 037237 943 YWRQFENGTTDSFVNMIVKSLWHLREFREEFMRRRQTIHNHIGD-----PCIVCALYDMFAALSTACEDNQVEVPSAPSS 1017 (1267)
Q Consensus 943 ~gL~N~~GgNTCFLNSILQcL~H~p~fRe~fLs~~~~~h~~~~~-----~CV~CAL~~LFsal~~ss~~~~~e~~vsPs~ 1017 (1267)
.||.|. |||||||+.+|||.+++.++++|+...+....+... .-+.-+..++...+.... . ..++|+.
T Consensus 247 ~Gl~nl--Gntcfmns~~q~l~~~~~l~e~f~~~~~~~ein~~n~~~~~~~~~~~~~~l~~~~~s~~----~-~~v~~~~ 319 (842)
T KOG1870|consen 247 TGLSNL--GNTCFMNSALQCLSNTPELLEYFLSDLYDREINESNPLGSAGEVASSFADLIKQLWSGN----K-SAVAPTS 319 (842)
T ss_pred cccccC--CccccchhhhhhhccCcchhHHHHhHhhHhhhcccCCCcccceechhhhhHHHHhccCC----c-cccCchh
Confidence 788885 999999999999999999999999865433222111 133344455555554322 1 1699999
Q ss_pred HHHHHHhcccchHHHhhhhccchHHHHHHHHHHHhhhccCCC--CCcCCcc--------cccCCCCCCC--CCchheeee
Q 037237 1018 LRVALTTYSYDKNICKQAKMNDSSELLQAILESLHESFDTVN--CDFQSQD--------EYEGSLDCSS--AGCFVHIIF 1085 (1267)
Q Consensus 1018 Lr~aLs~i~~ds~~F~~g~QqDAhEfL~~LLd~LH~s~~~~~--~~~es~e--------~~~~s~~~~~--~~CIIHqLF 1085 (1267)
++..+....+ .|.+++|+|.+||+.++||++|..+.... +..+..+ ...+.|.... ..++|+++|
T Consensus 320 ~~~~~~~~a~---~~~g~~q~d~~E~lafllDglhedl~~~~~kpy~~~~d~~~rp~~~~~~~~~~~~~~~~~s~i~d~~ 396 (842)
T KOG1870|consen 320 FRTSLASFAS---EFSGYGQQDSQELLAFLLDGLHEDLNRVSSKPYVEGKDSDLRPDQEVAAEVWDYHLKRNRSVIVDLF 396 (842)
T ss_pred hhhhhhhccc---cccCcccccchhhhhHHhhhhhHHhhccCCcCcccccccccchhhhhhHHHHHhhhhhccceeeeee
Confidence 9999999987 88889999999999999999999997643 1222111 1122354433 467999999
Q ss_pred eeEeEeEEecCCCCCcccc-cccccceeec
Q 037237 1086 GMDHYEKVNCVKCSAKFGY-RKYTSLFLTL 1114 (1267)
Q Consensus 1086 Gg~LrSqV~C~~Cg~~S~t-~pf~~l~l~I 1114 (1267)
.|.+++.+.|..|+..|.+ +||..+.+++
T Consensus 397 ~~~~~S~~~c~~C~~~svt~d~f~~Lslp~ 426 (842)
T KOG1870|consen 397 DGTYKSTLQCPTCGKVSVTFDPFGYLSLPL 426 (842)
T ss_pred cceecccccCccCCCceEEeeccccccccC
Confidence 9999999999999999988 6776555433
No 31
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.5e-24 Score=254.30 Aligned_cols=265 Identities=17% Similarity=0.230 Sum_probs=194.9
Q ss_pred hhccCCCCCCcchHHHHHHHhhCcHHHHHHHhccCccccCCCCCCcHHHHHHHHHHHHhcccCCCCccccccchHHHHHH
Q 037237 943 YWRQFENGTTDSFVNMIVKSLWHLREFREEFMRRRQTIHNHIGDPCIVCALYDMFAALSTACEDNQVEVPSAPSSLRVAL 1022 (1267)
Q Consensus 943 ~gL~N~~GgNTCFLNSILQcL~H~p~fRe~fLs~~~~~h~~~~~~CV~CAL~~LFsal~~ss~~~~~e~~vsPs~Lr~aL 1022 (1267)
.||+|. |-||||||.||+|..+..||+....-.. .|. .+...++-||+++|..++.+.. +|..+.|.+.+
T Consensus 194 VGlrNq--GATCYmNSLlQslffi~~FRk~Vy~ipT-d~p-~grdSValaLQr~Fynlq~~~~------PvdTteltrsf 263 (1089)
T COG5077 194 VGLRNQ--GATCYMNSLLQSLFFIAKFRKDVYGIPT-DHP-RGRDSVALALQRLFYNLQTGEE------PVDTTELTRSF 263 (1089)
T ss_pred eeeccC--CceeeHHHHHHHHHHHHHHHHHhhcCCC-CCC-CccchHHHHHHHHHHHHhccCC------CcchHHhhhhc
Confidence 789997 9999999999999999999999877431 122 2334799999999999997642 78888775544
Q ss_pred HhcccchHHHhhhhccchHHHHHHHHHHHhhhccCCCCCcCCcccccCCCCCCCCCchheeeeeeEeEeEEecCCCCCcc
Q 037237 1023 TTYSYDKNICKQAKMNDSSELLQAILESLHESFDTVNCDFQSQDEYEGSLDCSSAGCFVHIIFGMDHYEKVNCVKCSAKF 1102 (1267)
Q Consensus 1023 s~i~~ds~~F~~g~QqDAhEfL~~LLd~LH~s~~~~~~~~es~e~~~~s~~~~~~~CIIHqLFGg~LrSqV~C~~Cg~~S 1102 (1267)
.|.+...| +|+|.|||=+.+.|.|-++..+.. -.-.+..+|-|.++|.+.|-.-+++|
T Consensus 264 --gWds~dsf---~QHDiqEfnrVl~DnLEksmrgt~-----------------VEnaln~ifVgkmksyikCvnvnyEs 321 (1089)
T COG5077 264 --GWDSDDSF---MQHDIQEFNRVLQDNLEKSMRGTV-----------------VENALNGIFVGKMKSYIKCVNVNYES 321 (1089)
T ss_pred --CcccchHH---HHHhHHHHHHHHHHHHHHhhcCCh-----------------hhhHHhHHHHHHhhceeeEEEechhh
Confidence 33322233 688999999999999998654311 11246689999999999999999999
Q ss_pred cc-cccccceeeccchhccccccCCCCCcHHHHHHH--hccCCcccCCcCCCccc-eehccccCCcEEEEEeeccccchh
Q 037237 1103 GY-RKYTSLFLTLNAYNLRNMKKTPRGSSFDVLLKQ--LVLNGLLNCGACGQINY-IHHTLWRLPHVFTIGMLRVCNTIE 1178 (1267)
Q Consensus 1103 ~t-~pf~~l~l~I~as~l~~~k~~~~~~SF~~lLk~--~~~~~~~~C~~Cgk~~~-kq~tI~rlP~VLtIhLKRFeh~~~ 1178 (1267)
.. ..|+++.+.+... .++ ..||....+. ++++++|.|.+-|-..+ |-.+..++||||-+|||||+-
T Consensus 322 arvedfwdiqlNvK~~--knL-----qeSfr~yIqvE~l~GdN~Y~ae~~GlqdAkKGViFeSlPpVlhlqLKRFey--- 391 (1089)
T COG5077 322 ARVEDFWDIQLNVKGM--KNL-----QESFRRYIQVETLDGDNRYNAEKHGLQDAKKGVIFESLPPVLHLQLKRFEY--- 391 (1089)
T ss_pred hhHHHHHHHHhcccch--hhH-----HHHHHHhhhheeccCCcccccccccchhhccceeeccCchHHHHHHHHhcc---
Confidence 87 5677776554321 111 1356555544 34678899987775544 456679999999999999981
Q ss_pred hhhhhcccccceeeecccCCCCcchhhhhhhhcccccccCCcccCC-CC----CCCeEEEEEEEEEec--CCCcEEEEEE
Q 037237 1179 IEVIFGYSWLEFAVIGWQRDCESSEDVLSTLSALSAELDISNLFEG-YP----PDNIYFLASMVCVSS--DRQRYIIFVY 1251 (1267)
Q Consensus 1179 ~~~~f~~~~~~~~v~~w~~~~~s~~dIs~tl~~~~~~LDLs~ly~g-~d----~~~~Y~L~aVVcH~G--~gGHYicfvr 1251 (1267)
++..+..-+ |-+- -.||.++||.||.+. ++ .++.|.|+||++|.| ++|||+|+++
T Consensus 392 ---------------Dfe~d~mvK--INDr-yEFP~eiDl~pfld~da~ksen~d~vY~LygVlVHsGDl~~GHyYallK 453 (1089)
T COG5077 392 ---------------DFERDMMVK--INDR-YEFPLEIDLLPFLDRDADKSENSDAVYVLYGVLVHSGDLHEGHYYALLK 453 (1089)
T ss_pred ---------------ccccCceee--eccc-ccCcchhccccccCchhhhhcccCcEEEEEEEEEeccccCCceEEEEec
Confidence 222221211 1111 369999999998752 22 248999999999999 8999999999
Q ss_pred ecCCCcEEEecCCCCC
Q 037237 1252 NHMLEKYVQSDGATDE 1267 (1267)
Q Consensus 1252 ~~~~g~W~~fDDs~V~ 1267 (1267)
...+|+||+|||..|+
T Consensus 454 pe~dg~WykfdDtrVt 469 (1089)
T COG5077 454 PEKDGRWYKFDDTRVT 469 (1089)
T ss_pred cccCCCceeecceehh
Confidence 7789999999999985
No 32
>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.5e-23 Score=245.28 Aligned_cols=204 Identities=14% Similarity=0.194 Sum_probs=152.1
Q ss_pred hhccCCCCCCcchHHHHHHHhhCcHHHHHHHhccCccccCCCCCC--cHHHHHHHHHHHHhcccCCC-----Cccccccc
Q 037237 943 YWRQFENGTTDSFVNMIVKSLWHLREFREEFMRRRQTIHNHIGDP--CIVCALYDMFAALSTACEDN-----QVEVPSAP 1015 (1267)
Q Consensus 943 ~gL~N~~GgNTCFLNSILQcL~H~p~fRe~fLs~~~~~h~~~~~~--CV~CAL~~LFsal~~ss~~~-----~~e~~vsP 1015 (1267)
+||.|. ||+||||||+|+|..+|.|...++...+....-..+| |..|.|..+...|..+.... ..+..++|
T Consensus 308 tGl~Nl--GNSCYlnSVmQ~Lf~i~~fq~~~~~~~~~f~~~~~~P~ndf~cQ~~Kl~~gm~sgkys~p~~~~~~qngIsP 385 (763)
T KOG0944|consen 308 TGLINL--GNSCYLNSVMQSLFSIPSFQRRYLEQERIFNCYPKDPTNDFNCQLAKLLHGMLSGKYSKPLMDPSNQNGISP 385 (763)
T ss_pred cceeec--CcchhHHHHHHHheecccHHHhhccccceeecCCCCcchhHHHHHHHHHHHhhcCcccCccCCccccCCcCH
Confidence 899996 9999999999999999999999987522222122333 99999999999888654321 00136999
Q ss_pred hHHHHHHHhcccchHHHhhhhccchHHHHHHHHHHHhhhccCCCCCcCCcccccCCCCCCCCCchheeeeeeEeEeEEec
Q 037237 1016 SSLRVALTTYSYDKNICKQAKMNDSSELLQAILESLHESFDTVNCDFQSQDEYEGSLDCSSAGCFVHIIFGMDHYEKVNC 1095 (1267)
Q Consensus 1016 s~Lr~aLs~i~~ds~~F~~g~QqDAhEfL~~LLd~LH~s~~~~~~~~es~e~~~~s~~~~~~~CIIHqLFGg~LrSqV~C 1095 (1267)
..|+..+++-.+ -|...+||||+|||.+||+.+-+..... ..-+..+|-..+-.++.|
T Consensus 386 ~mFK~~igknHp---eFst~~QQDA~EFllfLl~ki~~n~rs~-------------------~~nptd~frF~ve~Rv~C 443 (763)
T KOG0944|consen 386 LMFKALIGKNHP---EFSTNRQQDAQEFLLFLLEKIRENSRSS-------------------LPNPTDLFRFEVEDRVSC 443 (763)
T ss_pred HHHHHHHcCCCc---cccchhhhhHHHHHHHHHHHHhhccccc-------------------CCCHHHHHHhhhhhhhhh
Confidence 999999988777 8999999999999999999998854321 124678999999999999
Q ss_pred CCCCCcccccccccceeeccchhccccccCCCCCcHHHHHHHhccC--CcccCCcCCCccce--ehccccCCcEEEEEee
Q 037237 1096 VKCSAKFGYRKYTSLFLTLNAYNLRNMKKTPRGSSFDVLLKQLVLN--GLLNCGACGQINYI--HHTLWRLPHVFTIGML 1171 (1267)
Q Consensus 1096 ~~Cg~~S~t~pf~~l~l~I~as~l~~~k~~~~~~SF~~lLk~~~~~--~~~~C~~Cgk~~~k--q~tI~rlP~VLtIhLK 1171 (1267)
..|++++.+. +.++.+.+++... + .-.....|..+|+.+... ..|.|..||.+..+ .-.+.++|.+|+||.+
T Consensus 444 ~~c~kVrYs~-~~~~~i~lpv~~~-~--~v~~~v~~~~cleaff~pq~~df~s~ac~~K~~a~kt~~~ksfP~yLiiqv~ 519 (763)
T KOG0944|consen 444 LGCRKVRYSY-ESEYLIQLPVPMT-N--EVREKVPISACLEAFFEPQVDDFWSTACGEKKGATKTTRFKSFPDYLIIQVG 519 (763)
T ss_pred hccccccccc-hhheeeEeecccc-c--cccccCCHHHHHHHhcCCcchhhhhHhhcCccccccccccccCCceEEEEee
Confidence 9999998762 1234433333210 0 011225789999887543 47899999988653 3457899999999999
Q ss_pred ccc
Q 037237 1172 RVC 1174 (1267)
Q Consensus 1172 RFe 1174 (1267)
||+
T Consensus 520 rf~ 522 (763)
T KOG0944|consen 520 RFT 522 (763)
T ss_pred EEE
Confidence 997
No 33
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.3e-21 Score=237.27 Aligned_cols=283 Identities=18% Similarity=0.281 Sum_probs=191.4
Q ss_pred cCCCCCCcchHH--HHHHHhhCcHHHHHHHhccCccccCC--CCCCcHHHHHHHHHHHHhcccCCCCccccccchHHHHH
Q 037237 946 QFENGTTDSFVN--MIVKSLWHLREFREEFMRRRQTIHNH--IGDPCIVCALYDMFAALSTACEDNQVEVPSAPSSLRVA 1021 (1267)
Q Consensus 946 ~N~~GgNTCFLN--SILQcL~H~p~fRe~fLs~~~~~h~~--~~~~CV~CAL~~LFsal~~ss~~~~~e~~vsPs~Lr~a 1021 (1267)
++...+++|+.| ++.|.+....++++..+......... ....++.|.+. +|........ .. ..+.|..++..
T Consensus 234 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~--~~-~~i~p~~~~~~ 309 (587)
T KOG1864|consen 234 GTNNFSNTCCCNFQSVEEALYFCRPFREAVLLYLTSLKRSYIIKEELLTCLLD-LFSSISSRKK--LV-GRISPTRFISD 309 (587)
T ss_pred CccccCccccccchhhHHHHHhhhhhcccccchhhcccchhhhhHHHHHHhhh-hccchhhhcc--cc-cccCcchhhhh
Confidence 344568999999 99999999999886655432211111 12235555443 3332221110 11 25889999999
Q ss_pred HHhcccchHHHhhhhccchHHHHHHHHHHHhhhccCCC----CCcC---Cccc---ccCCCCCC-----CCCchheeeee
Q 037237 1022 LTTYSYDKNICKQAKMNDSSELLQAILESLHESFDTVN----CDFQ---SQDE---YEGSLDCS-----SAGCFVHIIFG 1086 (1267)
Q Consensus 1022 Ls~i~~ds~~F~~g~QqDAhEfL~~LLd~LH~s~~~~~----~~~e---s~e~---~~~s~~~~-----~~~CIIHqLFG 1086 (1267)
+++... .|..+.|||||||+.++++.+++...... .... +..+ ...+|.+. ....+||.+|.
T Consensus 310 ~~~~~~---~f~~~~qQda~eF~~~l~~~~~e~~~~~~~~~~~~~~~~~~~gn~~~~~~~~~~~~~~~~~~~~~v~~lf~ 386 (587)
T KOG1864|consen 310 LIKENE---LFTNGMQQDAHEFLNFLLNEISETLERESSGTTTKVSPKESDGNSSTSAASWTNKGHHKSLRENWVSKLFQ 386 (587)
T ss_pred hhhcCC---ccCchhhccHHHHhhhhccchhhhhhhhccCCcccccccCCCCccccccccccccccccccchhHHHHhhc
Confidence 998876 89999999999999999999999875321 1111 0111 11123222 14578999999
Q ss_pred eEeEeEEecCCCCCcccc-cccccceeeccchhccccccCCCCCcHHHHHHHh------ccCCcccCCcCCCccc--eeh
Q 037237 1087 MDHYEKVNCVKCSAKFGY-RKYTSLFLTLNAYNLRNMKKTPRGSSFDVLLKQL------VLNGLLNCGACGQINY--IHH 1157 (1267)
Q Consensus 1087 g~LrSqV~C~~Cg~~S~t-~pf~~l~l~I~as~l~~~k~~~~~~SF~~lLk~~------~~~~~~~C~~Cgk~~~--kq~ 1157 (1267)
|.+..+..|..|+..+.. ..|.++.+.+..+ ...+...+++.+ ..+++|.|.+|...+. +++
T Consensus 387 g~l~~et~Clsc~t~T~~de~f~D~~~~v~~d---------e~~si~~~l~~~~~~e~l~g~nky~c~~c~s~qeae~~l 457 (587)
T KOG1864|consen 387 GILTNETRCLSCETITSRDEGFLDLSVAVEID---------ENTSITNLLKSFSSTETLSGENKYSCENCCSLQEAERRL 457 (587)
T ss_pred Ceeeeeeeeccccccccccccccccceecccc---------ccccHHHHHHHhcchhhccCCCcccccccCchhhHHHhc
Confidence 999999999999999987 5788887765532 225677777764 3678999999998876 456
Q ss_pred ccccCCcEEEEEeeccccchhhhhhhcccccceeeecccCCCCcchhhhhhhhcccccccCCcccC-CCCCCCeEEEEEE
Q 037237 1158 TLWRLPHVFTIGMLRVCNTIEIEVIFGYSWLEFAVIGWQRDCESSEDVLSTLSALSAELDISNLFE-GYPPDNIYFLASM 1236 (1267)
Q Consensus 1158 tI~rlP~VLtIhLKRFeh~~~~~~~f~~~~~~~~v~~w~~~~~s~~dIs~tl~~~~~~LDLs~ly~-g~d~~~~Y~L~aV 1236 (1267)
-+.++|.+|+||||||... . +....++.-. -+.+|..+++..-.. +..+..+|+|+||
T Consensus 458 ~~k~lp~~L~l~Lkrfk~~-----------------~-~~~~~~kl~~---~v~~plel~l~~~~~~~~~~~~~Y~L~av 516 (587)
T KOG1864|consen 458 KIKKLPYVLTLHLKRFKYS-----------------E-QQNRYTKLLY---RVVFPLELRLKDTLKDDNNPDRKYDLVAV 516 (587)
T ss_pred cccCCcceeeeehhccccc-----------------c-cccccccccc---ccccccceeeccccccccCccceeeEEEE
Confidence 6789999999999999721 1 1111111100 123555555554222 2223479999999
Q ss_pred EEEec---CCCcEEEEEEecCCCc-EEEecCCCCC
Q 037237 1237 VCVSS---DRQRYIIFVYNHMLEK-YVQSDGATDE 1267 (1267)
Q Consensus 1237 VcH~G---~gGHYicfvr~~~~g~-W~~fDDs~V~ 1267 (1267)
|||.| +.|||+||+|.. +. |+.|||.+|+
T Consensus 517 VvH~G~~p~~GHYia~~r~~--~~nWl~fdD~~V~ 549 (587)
T KOG1864|consen 517 VVHLGSTPNRGHYVAYVKSL--DFNWLLFDDDNVE 549 (587)
T ss_pred EEeccCCCCCcceEEEEeeC--CCCceeccccccc
Confidence 99998 889999999954 44 9999999985
No 34
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=6.9e-21 Score=218.11 Aligned_cols=217 Identities=13% Similarity=0.152 Sum_probs=155.2
Q ss_pred hhhhHHHHHH-------------------HHhhhhhhccCCCCCCcchHHHHHHHhhCcHHHHHHHhccCccc-cCCC-C
Q 037237 927 ADELKELERE-------------------IEAYLEYWRQFENGTTDSFVNMIVKSLWHLREFREEFMRRRQTI-HNHI-G 985 (1267)
Q Consensus 927 ~~~~~~~~~e-------------------~~~~l~~gL~N~~GgNTCFLNSILQcL~H~p~fRe~fLs~~~~~-h~~~-~ 985 (1267)
++++.+|+.| +.++...||.|+ ||+||||||+|+|.....+...|..-.+.. ..+. .
T Consensus 269 Eksl~~lq~eqn~nw~F~~~~~~~~sk~~~~ps~~~GliNl--GNsCYl~SviqSlv~~~v~~~~~d~l~~~~~~~~~~P 346 (749)
T COG5207 269 EKSLRKLQSEQNANWEFLEKKRAPESKGESVPSPYVGLINL--GNSCYLSSVIQSLVGYAVSKEEFDLLQHFEICYMKNP 346 (749)
T ss_pred HHHHHHHHHhhhcCcchhccccCchhhcccCCCCccceEec--CCeeeHHHHHHHHhccccchhhhhhhccceeeeecCC
Confidence 6677777776 334455789996 999999999999999999998876533221 1122 2
Q ss_pred CCcHHHHHHHHHHHHhcccCCCCccccccchHHHHHHHhcccchHHHhhhhccchHHHHHHHHHHHhhhccCCCCCcCCc
Q 037237 986 DPCIVCALYDMFAALSTACEDNQVEVPSAPSSLRVALTTYSYDKNICKQAKMNDSSELLQAILESLHESFDTVNCDFQSQ 1065 (1267)
Q Consensus 986 ~~CV~CAL~~LFsal~~ss~~~~~e~~vsPs~Lr~aLs~i~~ds~~F~~g~QqDAhEfL~~LLd~LH~s~~~~~~~~es~ 1065 (1267)
..|+.|.|..+...+..... .-+..++.|..|+..+..-.+ -|...+||||+|||.+||+.+.+.....
T Consensus 347 ~~~l~CQl~kll~~mk~~p~-~~y~ngi~p~~fk~~igq~h~---eFg~~~QQDA~EFLlfLL~kirk~~~S~------- 415 (749)
T COG5207 347 LECLFCQLMKLLSKMKETPD-NEYVNGISPLDFKMLIGQDHP---EFGKFAQQDAHEFLLFLLEKIRKGERSY------- 415 (749)
T ss_pred chhHHHHHHHHHhhccCCCC-ccccCCcChhhHHHHHcCCch---hhhhhhhhhHHHHHHHHHHHHhhccchh-------
Confidence 23999999999987765432 122237999999888877655 8888899999999999999998854321
Q ss_pred ccccCCCCCCCCCchheeeeeeEeEeEEecCCCCCcccccccccceeeccchhccccccCCCCCcHHHHHHHhccCC--c
Q 037237 1066 DEYEGSLDCSSAGCFVHIIFGMDHYEKVNCVKCSAKFGYRKYTSLFLTLNAYNLRNMKKTPRGSSFDVLLKQLVLNG--L 1143 (1267)
Q Consensus 1066 e~~~~s~~~~~~~CIIHqLFGg~LrSqV~C~~Cg~~S~t~pf~~l~l~I~as~l~~~k~~~~~~SF~~lLk~~~~~~--~ 1143 (1267)
..+.|..||......++.|..|+.++...|- ....-|... ......+..+.++.+-..+ .
T Consensus 416 -----------~~~~It~lf~Fe~e~rlsC~~C~~v~ySye~-~~~i~i~le------~n~E~~di~~~v~a~f~pdtiE 477 (749)
T COG5207 416 -----------LIPPITSLFEFEVERRLSCSGCMDVSYSYES-MLMICIFLE------GNDEPQDIRKSVEAFFLPDTIE 477 (749)
T ss_pred -----------cCCCcchhhhhhhcceecccccccccccccc-eEEEEeecc------cCcchhhHHHHHHheECcccee
Confidence 1346779999999999999999999865221 122233321 1112234555555544444 6
Q ss_pred ccCCcCCCccce--ehccccCCcEEEEEeeccc
Q 037237 1144 LNCGACGQINYI--HHTLWRLPHVFTIGMLRVC 1174 (1267)
Q Consensus 1144 ~~C~~Cgk~~~k--q~tI~rlP~VLtIhLKRFe 1174 (1267)
|.|.+|+.+..+ .-.+..+|.+|++|.-||.
T Consensus 478 ~~CenCk~K~~a~~k~~~kslPk~LIlq~~R~~ 510 (749)
T COG5207 478 WSCENCKGKKKASRKPFIKSLPKYLILQVGRYS 510 (749)
T ss_pred eehhhhcCcccccccchhhccCceeEEecceee
Confidence 999999877653 3468999999999999997
No 35
>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=3.4e-21 Score=249.26 Aligned_cols=270 Identities=16% Similarity=0.201 Sum_probs=196.5
Q ss_pred hhhhhhccCCCCCCcchHHHHHHHhhCcHHHHHHHhccCc-cccCCCCCCcHHHHHHHHHHHHhcccCCCCccccccchH
Q 037237 939 AYLEYWRQFENGTTDSFVNMIVKSLWHLREFREEFMRRRQ-TIHNHIGDPCIVCALYDMFAALSTACEDNQVEVPSAPSS 1017 (1267)
Q Consensus 939 ~~l~~gL~N~~GgNTCFLNSILQcL~H~p~fRe~fLs~~~-~~h~~~~~~CV~CAL~~LFsal~~ss~~~~~e~~vsPs~ 1017 (1267)
.+-++||.|. |+|||||++||+|+.++.||+.+.+-.. ..|.-... .++-+|+.+|..|+.+.. .+|.|+.
T Consensus 167 tg~~vGL~N~--GaTCY~NsllQ~lf~~~~FR~~Vy~~~~~~~~~~~~~-~v~~~lq~lF~~LQ~s~~-----k~Vdt~~ 238 (1093)
T KOG1863|consen 167 TGFPVGLKNL--GATCYVNSLLQVLFLIPEFRRAVYSIPPFTGHEDPRR-SIPLALQRLFYELQMSKR-----KYVDTSE 238 (1093)
T ss_pred CCCCccccCC--CceeeehHHHHHHHccHHHHHHHhcCCCCCCcccccc-hHHHHHHHHHHHHhhcCC-----CCcCchh
Confidence 4566899996 9999999999999999999999988542 11211122 477889999999997653 2789998
Q ss_pred HHHHHHhcccchHHHhhhhccchHHHHHHHHHHHhhhccCCCCCcCCcccccCCCCCCCCCchheeeeeeEeEeEEecCC
Q 037237 1018 LRVALTTYSYDKNICKQAKMNDSSELLQAILESLHESFDTVNCDFQSQDEYEGSLDCSSAGCFVHIIFGMDHYEKVNCVK 1097 (1267)
Q Consensus 1018 Lr~aLs~i~~ds~~F~~g~QqDAhEfL~~LLd~LH~s~~~~~~~~es~e~~~~s~~~~~~~CIIHqLFGg~LrSqV~C~~ 1097 (1267)
+...|..-. .....|||++||...++|.|-..+.... -.-.+..+|+|.+.+.+.|..
T Consensus 239 ~~~~~~~~~-----~~~~~QqDvqEf~~~l~d~LE~~~~~~~-----------------~~~~l~~lf~g~~~~~i~c~~ 296 (1093)
T KOG1863|consen 239 LTKSLGWDS-----NDSFEQQDVQEFLTKLLDWLEDSMIDAK-----------------VENTLQDLFTGKMKSVIKCID 296 (1093)
T ss_pred hhhhhhccc-----ccHHhhhhHHHHHHHHHHHHHhhccchh-----------------hhhhhhhhhcCCcceEEEEEe
Confidence 877775542 1234799999999999999988765421 123677899999999999999
Q ss_pred CCCcccc-cccccceeeccchhccccccCCCCCcHHHHHHHh--ccCCcccCCcCCCccc--eehccccCCcEEEEEeec
Q 037237 1098 CSAKFGY-RKYTSLFLTLNAYNLRNMKKTPRGSSFDVLLKQL--VLNGLLNCGACGQINY--IHHTLWRLPHVFTIGMLR 1172 (1267)
Q Consensus 1098 Cg~~S~t-~pf~~l~l~I~as~l~~~k~~~~~~SF~~lLk~~--~~~~~~~C~~Cgk~~~--kq~tI~rlP~VLtIhLKR 1172 (1267)
|+..|.. ..|.++-+. .....++ ..+|..++... ..+++ .|.+|...+. +.....++|+|++|||+|
T Consensus 297 ~~~~s~r~e~f~d~ql~--~~g~~nl-----~~sf~~y~~~E~l~gdn~-~~~~~~~~~~a~k~~~f~~lPpvl~~qL~R 368 (1093)
T KOG1863|consen 297 VDFESSRSESFLDLQLN--GKGVKNL-----EDSLHLYFEAEILLGDNK-YDAECHGLQDAKKGVLFDSLPPVLFIQLMR 368 (1093)
T ss_pred eeeeccccccccCcccc--ccchhhH-----HHHHHHhhhHHHhcCCcc-ccccccchhhhhcceeeccCCchhhhhhhh
Confidence 9999954 555555433 2211221 14677777642 23444 8999987765 345668999999999999
Q ss_pred cccchhhhhhhcccccceeeecccCCCCcchhhhhhhhcccccccCCcccC--CCC---CCCeEEEEEEEEEec--CCCc
Q 037237 1173 VCNTIEIEVIFGYSWLEFAVIGWQRDCESSEDVLSTLSALSAELDISNLFE--GYP---PDNIYFLASMVCVSS--DRQR 1245 (1267)
Q Consensus 1173 Feh~~~~~~~f~~~~~~~~v~~w~~~~~s~~dIs~tl~~~~~~LDLs~ly~--g~d---~~~~Y~L~aVVcH~G--~gGH 1245 (1267)
|+ +....+...+ |... -.||..|+|.+++. ... ..+.|+|.||..|.| ++||
T Consensus 369 f~------------------~~~~~~~~~K--i~d~-~~fp~~i~~d~~~~~~~~~~~~~~~~y~l~~v~vh~g~~~~gh 427 (1093)
T KOG1863|consen 369 FE------------------YDFSTGQKIK--INDK-FEFPLIIDMDRYLSRFKAEESERSAVYSLHAVLVHSGDAHSGH 427 (1093)
T ss_pred ee------------------eeccCCceee--hhhc-cCCccccccchhccccchhhhhccceeccchhhcccccccCcc
Confidence 96 2233332222 2222 25777788887654 232 235999999999987 9999
Q ss_pred EEEEEEecCCCcEEEecCCCCC
Q 037237 1246 YIIFVYNHMLEKYVQSDGATDE 1267 (1267)
Q Consensus 1246 Yicfvr~~~~g~W~~fDDs~V~ 1267 (1267)
|++|++....|+|+.|||..|+
T Consensus 428 y~~~i~~~~~~~w~kfdd~~v~ 449 (1093)
T KOG1863|consen 428 YVAYINPKLDGKWVKFDDLVVT 449 (1093)
T ss_pred ceeeecchhhccceeccCceee
Confidence 9999998889999999999874
No 36
>KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=5.4e-21 Score=227.44 Aligned_cols=155 Identities=15% Similarity=0.168 Sum_probs=98.4
Q ss_pred hhhccCCCCCCcchHHHHHHHhhCcHHHHHHHhccCccccC-CCCCCcHHHHHHHHHHHHhcccC------------CCC
Q 037237 942 EYWRQFENGTTDSFVNMIVKSLWHLREFREEFMRRRQTIHN-HIGDPCIVCALYDMFAALSTACE------------DNQ 1008 (1267)
Q Consensus 942 ~~gL~N~~GgNTCFLNSILQcL~H~p~fRe~fLs~~~~~h~-~~~~~CV~CAL~~LFsal~~ss~------------~~~ 1008 (1267)
-.||.|+ |||||+|+|+|+|..+|.||+.|..-...... -+.. -..-.|..||.++..-.+ .+.
T Consensus 205 VrGL~NL--GNTCFFNavMQnL~qt~~L~d~l~e~~~Sgt~v~I~~-~~~s~l~~L~~el~~~g~lt~al~~~~e~~e~~ 281 (877)
T KOG1873|consen 205 VRGLTNL--GNTCFFNAVMQNLAQTPALRDVLKEEKESGTSVKIRP-PLDSSLSPLFSELSSPGPLTYALANLLEMSETT 281 (877)
T ss_pred ccccccc--cchhhHHHHHHHHhhcHHHHHHHHhhccCCceeEecC-ccccchhhHHHhccCCcchhHHHHhhhhhhhcc
Confidence 3789997 99999999999999999999999864322111 1111 111223333333321100 112
Q ss_pred ccccccchHHHHHHHhcccchHHHhhhhccchHHHHHHHHHHHhhhccC-CC------CCcCCcc-----cccCCCCC--
Q 037237 1009 VEVPSAPSSLRVALTTYSYDKNICKQAKMNDSSELLQAILESLHESFDT-VN------CDFQSQD-----EYEGSLDC-- 1074 (1267)
Q Consensus 1009 ~e~~vsPs~Lr~aLs~i~~ds~~F~~g~QqDAhEfL~~LLd~LH~s~~~-~~------~~~es~e-----~~~~s~~~-- 1074 (1267)
.. ++.|..|-..|....| +|.+++||||||.|++|||.|-..-.. .. ...++.. .+.-..+.
T Consensus 282 ks-v~~Pr~lF~~~C~k~p---qF~g~~QhDsHELLR~LLD~l~~EE~~~~kk~Il~~fG~~t~~l~scle~~q~sKvYe 357 (877)
T KOG1873|consen 282 KS-VITPRTLFGQFCSKAP---QFRGYDQHDSHELLRCLLDSLRSEESRRRKKNILSNFGGETSSLVSCLECGQKSKVYE 357 (877)
T ss_pred CC-ccCHHHHHHHHHHhCC---cccccccccHHHHHHHHHHhhhHHHHHHHHHhHHHhhCccccchhhhhhccchhhccc
Confidence 32 7999999889999888 999999999999999999999765321 00 0111110 00000000
Q ss_pred -C-CCCchheeeeeeEeEeEEecCCCCCccc
Q 037237 1075 -S-SAGCFVHIIFGMDHYEKVNCVKCSAKFG 1103 (1267)
Q Consensus 1075 -~-~~~CIIHqLFGg~LrSqV~C~~Cg~~S~ 1103 (1267)
+ +-.-++-++|+|.+.+++.|..|...+.
T Consensus 358 ~f~~~~~~vp~~~~~~~~s~~~~~~~~vss~ 388 (877)
T KOG1873|consen 358 PFKDLSLPVPLSFNGPLTSQIECQACDVSSV 388 (877)
T ss_pred ccccCCcccccccCCCcccchhhhccceecc
Confidence 0 1234566999999999999999985543
No 37
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=5.4e-21 Score=223.72 Aligned_cols=250 Identities=15% Similarity=0.182 Sum_probs=167.5
Q ss_pred HHhhhh----hhccCCCCCCcchHHHHHHHhhCcHHHHHHHhccCccccCCCCCCcHHHHHHHHHHHHhcccCCCCcccc
Q 037237 937 IEAYLE----YWRQFENGTTDSFVNMIVKSLWHLREFREEFMRRRQTIHNHIGDPCIVCALYDMFAALSTACEDNQVEVP 1012 (1267)
Q Consensus 937 ~~~~l~----~gL~N~~GgNTCFLNSILQcL~H~p~fRe~fLs~~~~~h~~~~~~CV~CAL~~LFsal~~ss~~~~~e~~ 1012 (1267)
++++++ .||.|. .-|||||+.+|+|.-+|.|++.+-.. .. . +
T Consensus 78 ~~~~~~~~~yvglvnq--a~~~~l~~~~~a~~~~~~~~~~~yts----------------------------~~---~-~ 123 (1203)
T KOG4598|consen 78 IPVDENGHRYVGLVNQ--ASNDLLFEQSCAISLHDSGISKCYTS----------------------------EN---D-S 123 (1203)
T ss_pred eccccCCcceEeehhh--HHHHHHHHHhhhhccChhhhhhhhCC----------------------------Cc---c-c
Confidence 555555 789997 67999999999999999888665421 10 1 2
Q ss_pred ccchHHHHHHHhcccchHHHhhhhccchHHHHHHHHHHHhhhccCCCCCcCCcccccCCCCCCCCCchheeeeeeEeEeE
Q 037237 1013 SAPSSLRVALTTYSYDKNICKQAKMNDSSELLQAILESLHESFDTVNCDFQSQDEYEGSLDCSSAGCFVHIIFGMDHYEK 1092 (1267)
Q Consensus 1013 vsPs~Lr~aLs~i~~ds~~F~~g~QqDAhEfL~~LLd~LH~s~~~~~~~~es~e~~~~s~~~~~~~CIIHqLFGg~LrSq 1092 (1267)
+-.+.|-+.+.=- .-...+|+|.+|..+.++|+|.-- |+.....-+|..++.|.+..-
T Consensus 124 ~et~dlt~sfgw~-----s~ea~~qhdiqelcr~mfdalehk-----------------~k~t~~~~li~~ly~g~m~d~ 181 (1203)
T KOG4598|consen 124 LETKDLTQSFGWT-----SNEAYDQHDVQELCRLMFDALEHK-----------------WKGTEHEKLIQDLYRGTMEDF 181 (1203)
T ss_pred ccchhhHhhcCCC-----cchhhhhhhHHHHHHHHHHHHHhh-----------------hcCchHHHHHHHHhcchHHHH
Confidence 3333443333111 112347999999999999999542 444445568999999999999
Q ss_pred EecCCCCCcccccccccceeeccchhccccccCCCCCcHHHHHHHh------ccCCcccCCcCCCccc--eehccccCCc
Q 037237 1093 VNCVKCSAKFGYRKYTSLFLTLNAYNLRNMKKTPRGSSFDVLLKQL------VLNGLLNCGACGQINY--IHHTLWRLPH 1164 (1267)
Q Consensus 1093 V~C~~Cg~~S~t~pf~~l~l~I~as~l~~~k~~~~~~SF~~lLk~~------~~~~~~~C~~Cgk~~~--kq~tI~rlP~ 1164 (1267)
|.|..||.++.. ++.|++|++.- +--...-...|.++.|+.+ ++.++|.|++|++++. +-+-|..+|-
T Consensus 182 v~cl~c~~e~~~---~d~fld~pl~v-~pfg~~~ay~sieeal~afvqpe~ldg~nqy~ce~ck~k~dahkgl~~~~fpy 257 (1203)
T KOG4598|consen 182 VACLKCGRESVK---TDYFLDLPLAV-KPFGAIHAYKSVEEALTAFVQPELLDGSNQYMCENCKSKQDAHKGLRITQFPY 257 (1203)
T ss_pred HHHHHcCccccc---cceeecccccc-cCCcchhhhhhHHHHHHHhcChhhcCCccHHHHhhhhhhhhhhcCceeeccce
Confidence 999999999987 34566655421 1100111125788888775 3678999999999876 4566789999
Q ss_pred EEEEEeeccccchhhhhhhcccccceeeecccCCCCcchhhhhhhhcccccccCCcc-----------------------
Q 037237 1165 VFTIGMLRVCNTIEIEVIFGYSWLEFAVIGWQRDCESSEDVLSTLSALSAELDISNL----------------------- 1221 (1267)
Q Consensus 1165 VLtIhLKRFeh~~~~~~~f~~~~~~~~v~~w~~~~~s~~dIs~tl~~~~~~LDLs~l----------------------- 1221 (1267)
+||||||||. |+|.-.--+.+ .|- ..||..|||..|
T Consensus 258 ~lt~~lkrfd--------fdy~tmhrikl---------nd~----~tfp~~l~ln~~in~~~~s~~~~~~~~~~~~~~~~ 316 (1203)
T KOG4598|consen 258 LLTIQLKRFD--------FDYNTMHRIKL---------NDK----MTFPDVLDLNDYVNKEKRSTTSSAWQQIGKNKSEN 316 (1203)
T ss_pred eeEEeeeccc--------ccchheeeeee---------ccc----ccCcccccHHHhhhhccCCcchhHhhhcccccccc
Confidence 9999999997 22111000000 000 011111111111
Q ss_pred ------------------------c-------CCC-------------CCCCeEEEEEEEEEec--CCCcEEEEEEecCC
Q 037237 1222 ------------------------F-------EGY-------------PPDNIYFLASMVCVSS--DRQRYIIFVYNHML 1255 (1267)
Q Consensus 1222 ------------------------y-------~g~-------------d~~~~Y~L~aVVcH~G--~gGHYicfvr~~~~ 1255 (1267)
| .|. ..+..|.|++|..|+| .||||+||+++..+
T Consensus 317 ~~~~~~~~~~n~~~~~~~~~s~~~~~~~~n~~~g~~~~~~~~~~~~~~sg~~~yelf~imihsg~a~gghy~ayik~~d~ 396 (1203)
T KOG4598|consen 317 EEDDMELGSPNPKRCTPGVQSPNRYQGSENVCVGQPIDHAAVDDIVKTSGDNVYELFSVMVHSGNAAGGHYFAYIKNLDQ 396 (1203)
T ss_pred cccccccCCCCcccCcccccCcccccCccccccCCcCchhhhhhHhhcCCccHHHhhhhheecCCCCCceeeeeecccCc
Confidence 0 010 0135799999999999 89999999999999
Q ss_pred CcEEEecCCCCC
Q 037237 1256 EKYVQSDGATDE 1267 (1267)
Q Consensus 1256 g~W~~fDDs~V~ 1267 (1267)
++||.|||.+|+
T Consensus 397 ~~w~~fnd~~v~ 408 (1203)
T KOG4598|consen 397 DRWYVFNDTRVD 408 (1203)
T ss_pred CceEEecCcccc
Confidence 999999999985
No 38
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.79 E-value=7.7e-19 Score=193.72 Aligned_cols=102 Identities=20% Similarity=0.246 Sum_probs=76.7
Q ss_pred CCcHHHHHHHhccCCcccCCcCCCccceehccccCCcEEEEEeeccccchhhhhhhcccccceeeecccCCCCcchhhhh
Q 037237 1128 GSSFDVLLKQLVLNGLLNCGACGQINYIHHTLWRLPHVFTIGMLRVCNTIEIEVIFGYSWLEFAVIGWQRDCESSEDVLS 1207 (1267)
Q Consensus 1128 ~~SF~~lLk~~~~~~~~~C~~Cgk~~~kq~tI~rlP~VLtIhLKRFeh~~~~~~~f~~~~~~~~v~~w~~~~~s~~dIs~ 1207 (1267)
..+++++|+.+...+. |.++|+||+||||||.. ......+. .
T Consensus 79 ~~tLedcLe~~~~~e~---------------i~~lP~vLiIhLKRF~~--------------------~~~~~~Kl---~ 120 (241)
T cd02670 79 GITLEQCLEQYFNNSV---------------FAKAPSCLIICLKRYGK--------------------TEGKAQKM---F 120 (241)
T ss_pred cCCHHHHHHHHhchhh---------------hhhCCCeEEEEEEcccc--------------------CCCcceeC---C
Confidence 3689999998754432 89999999999999973 11111121 3
Q ss_pred hhhcccccccCCcccCCC-----------------------CCCCeEEEEEEEEEec---CCCcEEEEEEecC-------
Q 037237 1208 TLSALSAELDISNLFEGY-----------------------PPDNIYFLASMVCVSS---DRQRYIIFVYNHM------- 1254 (1267)
Q Consensus 1208 tl~~~~~~LDLs~ly~g~-----------------------d~~~~Y~L~aVVcH~G---~gGHYicfvr~~~------- 1254 (1267)
+.+.||..|||++++.+. ....+|+|+|||+|.| ++|||+||||+..
T Consensus 121 ~~I~fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G~s~~sGHYva~vr~~~~~~~~~~ 200 (241)
T cd02670 121 KKILIPDEIDIPDFVADDPRACSKCQLECRVCYDDKDFSPTCGKFKLSLCSAVCHRGTSLETGHYVAFVRYGSYSLTETD 200 (241)
T ss_pred cEECCCCcCCchhhcccccccccccccccccccccccccCCCCCeEEEEEEEEEeCCCCCCCcCeEEEEECCcccccccc
Confidence 346789999999876431 1235899999999999 6899999999764
Q ss_pred ----CCcEEEecCCCCC
Q 037237 1255 ----LEKYVQSDGATDE 1267 (1267)
Q Consensus 1255 ----~g~W~~fDDs~V~ 1267 (1267)
.++||.|||..|+
T Consensus 201 ~~~~~~~W~~FDD~~v~ 217 (241)
T cd02670 201 NEAYNAQWVFFDDMADR 217 (241)
T ss_pred cCCCCCeEEEecCcccc
Confidence 3899999998764
No 39
>KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.6e-17 Score=187.82 Aligned_cols=287 Identities=18% Similarity=0.122 Sum_probs=177.0
Q ss_pred hhhccCCCCCCcchHHHHHHHhhCcHHHHHHHhccCccccCCCCCCcHHHHHHHHH----HHHhcccC------------
Q 037237 942 EYWRQFENGTTDSFVNMIVKSLWHLREFREEFMRRRQTIHNHIGDPCIVCALYDMF----AALSTACE------------ 1005 (1267)
Q Consensus 942 ~~gL~N~~GgNTCFLNSILQcL~H~p~fRe~fLs~~~~~h~~~~~~CV~CAL~~LF----sal~~ss~------------ 1005 (1267)
+.|+-|- +|-||||+|||+|.+++||-+.+-... ....... |..|.+-+.+ +.+.+.+.
T Consensus 28 Prg~ink--~n~c~~ns~Lqal~~c~pfy~l~~~i~--~~~~~~~-~~stp~lda~~~~~~df~n~~~~k~~r~N~~~~~ 102 (420)
T KOG1871|consen 28 PRGSINK--CNICFMNSILQALLYCSPFYNLLELIK--RADGTVK-EGSTPLLDASRPASSDFNNDSDAKLPRKNSLRVP 102 (420)
T ss_pred Ccccccc--ceeEeeHHHHHHHHhCccHHHHHHhhh--hhcCcee-cccchhHHHHHHHHhhccccchhhhhhhccCCcc
Confidence 3677774 999999999999999999998775422 1111111 4455444433 33331110
Q ss_pred ------------CCCccccccchHHHHHHHhcccchHHHhhhhccchHHHHHHHHHHHhhhccCCC-------C------
Q 037237 1006 ------------DNQVEVPSAPSSLRVALTTYSYDKNICKQAKMNDSSELLQAILESLHESFDTVN-------C------ 1060 (1267)
Q Consensus 1006 ------------~~~~e~~vsPs~Lr~aLs~i~~ds~~F~~g~QqDAhEfL~~LLd~LH~s~~~~~-------~------ 1060 (1267)
..++. ++.|..+-..|..... ...-+.|.|+||.||+..+||.||..+..+. .
T Consensus 103 ~~~~~~ses~~~d~~~d-av~~d~~~~~l~t~~~-~e~~~~g~qedAeefl~~~ld~lhee~~~v~~~~~~~n~e~t~~~ 180 (420)
T KOG1871|consen 103 EHVVEKSESNKSDLQGD-AVKPDPIYLDLLTMSR-FESLQVGKQEDAEEFLLDNLDFLHEESSEVPTELVPPNDEFTPRG 180 (420)
T ss_pred ccccchhhhhhhcccCc-cccCCchhhhcccCCc-hhhccccccccHHHHHHHHHhhhhHHHHhhhhhhcCCcccccccc
Confidence 11233 4555555555555522 2233558999999999999999999874311 0
Q ss_pred --------CcCCcc-cccC--CC--------------CCCCCCchheeeeeeEeEeEEecCCCCCcccc-cccccceeec
Q 037237 1061 --------DFQSQD-EYEG--SL--------------DCSSAGCFVHIIFGMDHYEKVNCVKCSAKFGY-RKYTSLFLTL 1114 (1267)
Q Consensus 1061 --------~~es~e-~~~~--s~--------------~~~~~~CIIHqLFGg~LrSqV~C~~Cg~~S~t-~pf~~l~l~I 1114 (1267)
..++.+ +..+ +| ...-+.++|+++|||++++.+.=. =.++|.+ .||-.+.++|
T Consensus 181 ~i~~~n~~n~~s~~e~~~~~~~~~~~~gk~~k~~i~r~~~~~~spiS~ifgg~~rs~l~~~-~nkeS~tlqPF~tlqldi 259 (420)
T KOG1871|consen 181 LINNGNLCNLDSTEEAGLSESSGVQLLGKIQKTDIPRADSFVRSPISEIFGGQLRSVLYQP-SNKESATLQPFFTLQLDI 259 (420)
T ss_pred cccccccccccchhhcccccCchhhhcCCcccCccCCCCCcccCcHHHhhccccccceecc-ccccccccCccceeeeee
Confidence 001111 1100 00 001146789999999999988764 4555666 7999999888
Q ss_pred cchhccccccCCCCCcHHHHHHHhcc--CCcccCCcCCCcc--ceehccccCCcEEEEEeeccccchhhhhhhcccccce
Q 037237 1115 NAYNLRNMKKTPRGSSFDVLLKQLVL--NGLLNCGACGQIN--YIHHTLWRLPHVFTIGMLRVCNTIEIEVIFGYSWLEF 1190 (1267)
Q Consensus 1115 ~as~l~~~k~~~~~~SF~~lLk~~~~--~~~~~C~~Cgk~~--~kq~tI~rlP~VLtIhLKRFeh~~~~~~~f~~~~~~~ 1190 (1267)
.+..+.... +.++.+.. ..+..-.+=|+.. ..+.+|.++|+||++|||||-
T Consensus 260 q~~~i~sv~---------~ales~~~re~lp~~st~s~~eV~~s~q~~leklp~vlilhlkrF~---------------- 314 (420)
T KOG1871|consen 260 QSEKIHSVQ---------DALESLVARESLPGYSTKSGQEVEASSQTTLEKLPPVLILHLKRFV---------------- 314 (420)
T ss_pred eccccCCHH---------HHhhccChhhcccceecCCCCeechhhhhhHhhcchhhhhhhhHHH----------------
Confidence 765444433 33332211 1112222222222 268899999999999999994
Q ss_pred eeecccCCCCcchhhhhhhhcccccccCCcc-c-CCCC-----CCCeEEEEEEEEEec---CCCcEEEEEEecCCCcEEE
Q 037237 1191 AVIGWQRDCESSEDVLSTLSALSAELDISNL-F-EGYP-----PDNIYFLASMVCVSS---DRQRYIIFVYNHMLEKYVQ 1260 (1267)
Q Consensus 1191 ~v~~w~~~~~s~~dIs~tl~~~~~~LDLs~l-y-~g~d-----~~~~Y~L~aVVcH~G---~gGHYicfvr~~~~g~W~~ 1260 (1267)
+.-.++ ..++.+ -..+++++.|+.- + .++. -...|.|++||-|.| .+|||+.-+.+.....|++
T Consensus 315 --ye~tgg---~~k~~K-~i~~~~~l~i~~~~~s~gvk~~~~~~~~~yks~~vvyhtgtsatvghYl~dv~~s~~~gw~r 388 (420)
T KOG1871|consen 315 --YEKTGG---ARKLGK-KIEYPWTLKISKNCFSQGLKIRILIATRPYKSLAVVYHTGTSATVGHYLEDVSRSVPSGWQR 388 (420)
T ss_pred --HHhccc---hhhhch-hhhccceeeechhhhccccchhhhccccccceEEEEEecccccccCceEEeeeecccCceeE
Confidence 111111 111111 1357777777752 2 2332 235799999999998 8999999999888999999
Q ss_pred ecCCCCC
Q 037237 1261 SDGATDE 1267 (1267)
Q Consensus 1261 fDDs~V~ 1267 (1267)
+||+.|.
T Consensus 389 IDD~~i~ 395 (420)
T KOG1871|consen 389 IDDALIL 395 (420)
T ss_pred eccceee
Confidence 9999873
No 40
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1.2e-16 Score=184.90 Aligned_cols=271 Identities=15% Similarity=0.110 Sum_probs=177.2
Q ss_pred HHhhhhhhccCCCCCCcchHHHHHHHhhCcHHHHHHHhccCccccCCC---CCCcHHHHHHHHHHHHhcccCCCCccccc
Q 037237 937 IEAYLEYWRQFENGTTDSFVNMIVKSLWHLREFREEFMRRRQTIHNHI---GDPCIVCALYDMFAALSTACEDNQVEVPS 1013 (1267)
Q Consensus 937 ~~~~l~~gL~N~~GgNTCFLNSILQcL~H~p~fRe~fLs~~~~~h~~~---~~~CV~CAL~~LFsal~~ss~~~~~e~~v 1013 (1267)
-.+.+++|+.|. |||||||+.+|||--.|+++..+........... ...-++-+++.+|..+... + ++
T Consensus 100 ~~~~lp~gl~nl--gNtcymnrtVq~lk~v~el~~~~s~~~~~~~~~~t~~~a~~i~~~mR~~f~~~~~~------~-~v 170 (473)
T KOG1872|consen 100 AALPLPVGLPNL--GNTCYMNRTVQCLKGVPELPDALSLYKRKRGRGDTWERRRRISIETRTCFRPLCEK------G-AV 170 (473)
T ss_pred hhccCCccccch--hHHHHhhhhhhhhhcCccCcchhhccchhccCCchhhhhhhHHHHHHHHHHhhhcc------C-Cc
Confidence 346677899996 9999999999999999999988876431111110 1237889999999999854 2 79
Q ss_pred cchHHHHHHHhcccchHHHhh------hhccchHHHHHHHHHHHhhhccCCCCCcCCcccccCCCCCCCCCchheeeeee
Q 037237 1014 APSSLRVALTTYSYDKNICKQ------AKMNDSSELLQAILESLHESFDTVNCDFQSQDEYEGSLDCSSAGCFVHIIFGM 1087 (1267)
Q Consensus 1014 sPs~Lr~aLs~i~~ds~~F~~------g~QqDAhEfL~~LLd~LH~s~~~~~~~~es~e~~~~s~~~~~~~CIIHqLFGg 1087 (1267)
.|..+..+|++.+| +|.. +.||||.|++..++-.+|+.+.... ........+.++|+.
T Consensus 171 ~pi~llqtl~~~~P---qfa~~~~~g~~~qqda~ec~~~~m~~l~~~~~~~~-------------~~~~~~~~~d~~f~~ 234 (473)
T KOG1872|consen 171 APINLLQTLSSQYP---QFAEWVEYGIYMQQDAAECWMEEPGMLTEALTVAT-------------EAPCLEAEAAAGFGA 234 (473)
T ss_pred chHHHHHHHHHHhH---HHHHHhhhhhHHHHHHhHhHHHhhhheeccccccc-------------cccchhHHHHHhhcc
Confidence 99999999999999 8865 5799999999999999999876532 111234578899999
Q ss_pred EeEeEEecCCCCCcccc---cccccceeeccch--hccccccCCCCCcHHHHHHHhccCCcccCCcCCCccc--eehccc
Q 037237 1088 DHYEKVNCVKCSAKFGY---RKYTSLFLTLNAY--NLRNMKKTPRGSSFDVLLKQLVLNGLLNCGACGQINY--IHHTLW 1160 (1267)
Q Consensus 1088 ~LrSqV~C~~Cg~~S~t---~pf~~l~l~I~as--~l~~~k~~~~~~SF~~lLk~~~~~~~~~C~~Cgk~~~--kq~tI~ 1160 (1267)
.+..++.|..=...+.. +.|.+|.+.|+-. .+++... ..+.+.+... -+-=|.... +-.-|.
T Consensus 235 ~~~~t~~~~e~e~~~~~~~~E~~~~L~c~i~~~~~~~k~Gl~----~~~~e~~~K~-------s~~lgr~a~y~k~~~is 303 (473)
T KOG1872|consen 235 EFSTTMSCSEGEDEGGGAGRELVDQLKCIINKTVHDMRFGLK----SGLSEEIQKI-------SSILGRPAAYQKVMYIS 303 (473)
T ss_pred ccccceeeccCcccccccccccccccceEEeeeechhhhhhh----hhhhhhhhcc-------CcccCCChHHHHHhHhh
Confidence 99999999866555543 2344444444321 1111000 1122221110 011111111 345689
Q ss_pred cCCcEEEEEeeccccchhhhhhhcccccceeeecccCCCCcchhhhhhhhcccccc--cCCccc----------------
Q 037237 1161 RLPHVFTIGMLRVCNTIEIEVIFGYSWLEFAVIGWQRDCESSEDVLSTLSALSAEL--DISNLF---------------- 1222 (1267)
Q Consensus 1161 rlP~VLtIhLKRFeh~~~~~~~f~~~~~~~~v~~w~~~~~s~~dIs~tl~~~~~~L--DLs~ly---------------- 1222 (1267)
++|..||+++-||- |..+-... ..+|..+.+|+ |.-.++
T Consensus 304 rlP~ylTvq~vrf~--------------------~k~k~~~~---akil~~V~fP~~ld~~d~ct~el~~k~~~~r~k~r 360 (473)
T KOG1872|consen 304 RLPEYLTVQEVRFF--------------------SKAKIMVV---AKILNAVNFPKDLDQQDLCTPELKKKLLCRRKKHR 360 (473)
T ss_pred cCcccceEEEEEEE--------------------eccccchH---HHHHHhccChhhhhHHHhhCHHhhcCccchHHHHH
Confidence 99999999998884 32221111 12232222222 222111
Q ss_pred -------------------------------CCCC---C-CCeEEEEEEEEEec---CCCcEEEEEEecCCCcEEEecCC
Q 037237 1223 -------------------------------EGYP---P-DNIYFLASMVCVSS---DRQRYIIFVYNHMLEKYVQSDGA 1264 (1267)
Q Consensus 1223 -------------------------------~g~d---~-~~~Y~L~aVVcH~G---~gGHYicfvr~~~~g~W~~fDDs 1264 (1267)
...+ . ...|+|.+|+.|.| .+|||++++|+. .+.|++|||+
T Consensus 361 ~~edkk~~~~~~~k~~~~~~~~~~~~~e~~~~~~~~~s~~~g~y~l~~vithkgrss~sghy~aw~r~s-~~~w~~fdd~ 439 (473)
T KOG1872|consen 361 KVEDKKKEEDVMPKVKGAQERLKEVPLEGMYNKSGGKSRNSGLYDLQLVITHKGRSSKSGHYVAWNRVS-EDKWGHFDDD 439 (473)
T ss_pred HHHhcCCchhhcccccCcCcccccccccchhccccccccccceeeeeEeeeccccccCCCcceEEEecc-CCceeecccc
Confidence 1001 1 24699999999999 789999999986 6799999999
Q ss_pred CCC
Q 037237 1265 TDE 1267 (1267)
Q Consensus 1265 ~V~ 1267 (1267)
+|.
T Consensus 440 ~vs 442 (473)
T KOG1872|consen 440 MVS 442 (473)
T ss_pred ccc
Confidence 884
No 41
>KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton]
Probab=99.60 E-value=6.8e-15 Score=166.14 Aligned_cols=278 Identities=17% Similarity=0.179 Sum_probs=185.5
Q ss_pred hhhh--hhccCCCCCCcchHHHHHHHhhCcHHHHHHHhccCccccCCCCCCcHHHHHHHHHHHHhcccCCCCccccccch
Q 037237 939 AYLE--YWRQFENGTTDSFVNMIVKSLWHLREFREEFMRRRQTIHNHIGDPCIVCALYDMFAALSTACEDNQVEVPSAPS 1016 (1267)
Q Consensus 939 ~~l~--~gL~N~~GgNTCFLNSILQcL~H~p~fRe~fLs~~~~~h~~~~~~CV~CAL~~LFsal~~ss~~~~~e~~vsPs 1016 (1267)
-+++ .||-|. ..+=|.|++||+|.|.+|+|++|+...-..+.+ . -++--|..+.+.++... .-. .-|+|.
T Consensus 129 tYLpG~VGLnNi--k~~dy~n~vl~~ls~v~PlRnyFl~~~n~~d~~-~--~lv~rl~~l~rklw~~r--~fk-~hvSph 200 (442)
T KOG2026|consen 129 TYLPGFVGLNNI--KANDYANAVLQALSHVVPLRNYFLLEENYFDNL-T--ELVQRLGELIRKLWNPR--NFK-GHVSPH 200 (442)
T ss_pred cceeeeeccchh--hhHHHHHHHHHHHhccchhhhhhcccccccchh-H--HHHHHHHHHHHHhcChh--hhc-ccCCHH
Confidence 4444 677776 667799999999999999999999863211211 1 12222445556665432 112 269999
Q ss_pred HHHHHHHhcccchHHHhhhhccchHHHHHHHHHHHhhhccCCCCCcCCcccccCCCCCCCCCchheeeeeeEeEeEEecC
Q 037237 1017 SLRVALTTYSYDKNICKQAKMNDSSELLQAILESLHESFDTVNCDFQSQDEYEGSLDCSSAGCFVHIIFGMDHYEKVNCV 1096 (1267)
Q Consensus 1017 ~Lr~aLs~i~~ds~~F~~g~QqDAhEfL~~LLd~LH~s~~~~~~~~es~e~~~~s~~~~~~~CIIHqLFGg~LrSqV~C~ 1096 (1267)
.+..+...+.. ..|+.++|.|+.||+..+|+.||.++.+.. ...+|||..|+|.++-...=.
T Consensus 201 e~lqaV~~~s~--k~f~i~~q~DpveFlswllntlhs~l~~~k----------------~~~SIi~~~fqG~~ri~k~~~ 262 (442)
T KOG2026|consen 201 EFLQAVMKLSK--KRFRIGQQSDPVEFLSWLLNTLHSDLRGSK----------------KASSIIHKSFQGEVRIVKEKQ 262 (442)
T ss_pred HHHHHHHHHhh--hheecCCCCCHHHHHHHHHHHHHHHhCCCC----------------CchhHhhHhhcceEEeeeecc
Confidence 99999988754 488889999999999999999999887521 346899999999987332222
Q ss_pred CCC--Ccc---cccccccceeeccchhccc-c--ccCCCCCcHHHHHHHhccCCcccCCcCCCccceehccccCCcEEEE
Q 037237 1097 KCS--AKF---GYRKYTSLFLTLNAYNLRN-M--KKTPRGSSFDVLLKQLVLNGLLNCGACGQINYIHHTLWRLPHVFTI 1168 (1267)
Q Consensus 1097 ~Cg--~~S---~t~pf~~l~l~I~as~l~~-~--k~~~~~~SF~~lLk~~~~~~~~~C~~Cgk~~~kq~tI~rlP~VLtI 1168 (1267)
.=. ... ...||.-+.++++...+-. . +...+..-+.++|+.+++...---.+= .-.+++-+-++|+.|++
T Consensus 263 ~~~~~~~~~~i~~~~Fl~LtLDLP~~plfkD~~e~niiPQV~l~~lL~Kf~g~t~~e~~~~--~~~~rf~l~k~P~ylif 340 (442)
T KOG2026|consen 263 GEASENENKEISVMPFLYLTLDLPPPPLFKDVMEKNIIPQVALFDLLKKFDGETVTEVVTP--KLAMRFRLTKLPRYLIF 340 (442)
T ss_pred ccccccccceEEEEeeEEEEecCCCCCcccchhhhcccccchHHHHHHHhcCceeeeecch--hhhhheeeecCCceEEE
Confidence 100 111 1136766666666543322 1 112334568899988864211000000 01167778999999999
Q ss_pred EeeccccchhhhhhhcccccceeeecccCCCCcchhhhhhhhccc-ccccCCcccC----CCCCCCeEEEEEEEEEecCC
Q 037237 1169 GMLRVCNTIEIEVIFGYSWLEFAVIGWQRDCESSEDVLSTLSALS-AELDISNLFE----GYPPDNIYFLASMVCVSSDR 1243 (1267)
Q Consensus 1169 hLKRFeh~~~~~~~f~~~~~~~~v~~w~~~~~s~~dIs~tl~~~~-~~LDLs~ly~----g~d~~~~Y~L~aVVcH~G~g 1243 (1267)
|+|||.-+ +|...+. .|++.|+ .++|+.++.. ..++-+.|.|.|=+.|--+.
T Consensus 341 h~~rF~kN-----------------n~f~ekN------pTl~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~i~~~e~ 397 (442)
T KOG2026|consen 341 HMKRFKKN-----------------NFFKEKN------PTLVEFPYSEVDILHVLDRLKAVNHKVTQYSLVANAIHEDED 397 (442)
T ss_pred Eeeecccc-----------------CcccccC------CceeeccCCccchhhhhhhcccccCccccccchhhhhcCccc
Confidence 99999722 2444321 4667787 6777776331 22334789999988887788
Q ss_pred CcEEEEEEecCCCcEEEecCCCCC
Q 037237 1244 QRYIIFVYNHMLEKYVQSDGATDE 1267 (1267)
Q Consensus 1244 GHYicfvr~~~~g~W~~fDDs~V~ 1267 (1267)
|||..++++...++||.++|=.|+
T Consensus 398 ~~~riqi~~~~s~kW~eiqdl~v~ 421 (442)
T KOG2026|consen 398 GNFRIQIYDNSSEKWYEIQDLHVT 421 (442)
T ss_pred CceEEEEEeCCCcceEEecccchh
Confidence 999999999899999999998774
No 42
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=99.49 E-value=9.5e-14 Score=168.70 Aligned_cols=285 Identities=18% Similarity=0.249 Sum_probs=170.3
Q ss_pred CCCcchHHHHHHHhhCcHHHHHHHhccCccccCCCCCCcHHHHHHHHHHHHhcccCCCCccccccchHHHHHHHhcccch
Q 037237 950 GTTDSFVNMIVKSLWHLREFREEFMRRRQTIHNHIGDPCIVCALYDMFAALSTACEDNQVEVPSAPSSLRVALTTYSYDK 1029 (1267)
Q Consensus 950 GgNTCFLNSILQcL~H~p~fRe~fLs~~~~~h~~~~~~CV~CAL~~LFsal~~ss~~~~~e~~vsPs~Lr~aLs~i~~ds 1029 (1267)
++-|.|.|++||.|+.+|++|...++ |.|..+.|+.|+|..+|.+|..+.+ . ++..++|.++|+.+..
T Consensus 505 ~i~N~YcNamiQllyfl~~~r~~vl~-----H~C~~e~CL~CELGFLF~Ml~~S~G----~-~Cqa~NFlraf~t~~~-- 572 (1118)
T KOG1275|consen 505 DIPNSYCNAMIQLLYFLPPIRSIVLR-----HICTKEFCLLCELGFLFTMLDSSTG----D-PCQANNFLRAFRTNPE-- 572 (1118)
T ss_pred CCchHHHHHHHHHHHhccHHHHHHHc-----CccchhHHHHHHHHHHHHHHhhhcC----C-ccchhHHHHHHhhChH--
Confidence 45567999999999999999999987 6799999999999999999997654 3 7999999999998744
Q ss_pred HHHhhhh-ccc--hHHHH--HHHHHH----------HhhhccCCCCCcCCcccccCCCCCCCCCchheeeeeeEeEeEEe
Q 037237 1030 NICKQAK-MND--SSELL--QAILES----------LHESFDTVNCDFQSQDEYEGSLDCSSAGCFVHIIFGMDHYEKVN 1094 (1267)
Q Consensus 1030 ~~F~~g~-QqD--AhEfL--~~LLd~----------LH~s~~~~~~~~es~e~~~~s~~~~~~~CIIHqLFGg~LrSqV~ 1094 (1267)
.-+.|. -.| +.+.+ ..+++. .|..+........+.. ..+...+-+...++.++|+........
T Consensus 573 -a~~LG~vl~d~~~~~~~~~~~liq~~~~~~~set~~~~d~~~~~~~~~s~~-~~~~~~~vn~~~~l~q~F~~~~e~~~~ 650 (1118)
T KOG1275|consen 573 -ASALGLVLSDTQISGTVNDDVLIQDAEGFISSETSRHLDCQDCRGLQQSES-VDGESFKVNYAPVLQQSFCQEIEKSLR 650 (1118)
T ss_pred -hhhhcccccchhhccccchHHHhhhhhhccchhhhhhhhHHHhhhhhhhhc-ccCceeeecchhHHHHHhhhHHHHhhh
Confidence 222332 111 22221 111221 1221111000000000 001122223456889999999999999
Q ss_pred cCCCCCcccccccccceeeccchhccccc-c-CCCCCcHHHHHHHhc---cCCcccCCcCCCccce--ehccccCCcEEE
Q 037237 1095 CVKCSAKFGYRKYTSLFLTLNAYNLRNMK-K-TPRGSSFDVLLKQLV---LNGLLNCGACGQINYI--HHTLWRLPHVFT 1167 (1267)
Q Consensus 1095 C~~Cg~~S~t~pf~~l~l~I~as~l~~~k-~-~~~~~SF~~lLk~~~---~~~~~~C~~Cgk~~~k--q~tI~rlP~VLt 1167 (1267)
|..||.++.+.. ..+.++.+.+...+ . .....-|.++|+... ..-+-.|+.|++.+.. +..+..+|.||.
T Consensus 651 Cg~C~~~~~~~k---~l~~~~lsyp~~~~id~~~~~~~F~~iL~R~l~l~kn~~~~C~~C~k~ep~~q~~~vr~LPd~L~ 727 (1118)
T KOG1275|consen 651 CGECGDEKQKSK---SLLRKVLSYPNVLLIDTLAKSNNFVEILKRSLSLFKNKQAWCETCTKPEPTSQKKNVRSLPDCLS 727 (1118)
T ss_pred cccccchhhhhh---hhhheeecCCCccchhhcccccchHHHhhhhhhcccccccccccccCCCCcccccccccCcceee
Confidence 999999987632 11122222222211 1 112245899997743 3345789999999873 567999999999
Q ss_pred EEeeccccchhhhhhhcccccceeeecccCCCCcchhh--h-----------hhhhcccccccCCcccCCCCCC--CeEE
Q 037237 1168 IGMLRVCNTIEIEVIFGYSWLEFAVIGWQRDCESSEDV--L-----------STLSALSAELDISNLFEGYPPD--NIYF 1232 (1267)
Q Consensus 1168 IhLKRFeh~~~~~~~f~~~~~~~~v~~w~~~~~s~~dI--s-----------~tl~~~~~~LDLs~ly~g~d~~--~~Y~ 1232 (1267)
|..--+.|.. +-| |........++ + .++++=...++-+++ .+.|.+ .+|.
T Consensus 728 in~~~~~~~~-------------~~~-~a~q~~~~~~vWLP~~~~~~~~k~~~~~v~~~s~~~~~~~-~~~d~~~~~vYe 792 (1118)
T KOG1275|consen 728 INTCLNVHEL-------------VDF-WARQNKLLEDVWLPEWFHMIISKNKAQLVSTISDLDVSPL-PDYDEPSAVVYE 792 (1118)
T ss_pred eeeeccchhh-------------hhh-HHHhhccccccccchheeEEEecccceeeeeeccccCCCC-ccccCCceEEEE
Confidence 9876665431 000 11111000000 0 011110111121111 122333 5899
Q ss_pred EEEEEEEec---CCCcEEEEEEe--------cCCCcEEEecCCCC
Q 037237 1233 LASMVCVSS---DRQRYIIFVYN--------HMLEKYVQSDGATD 1266 (1267)
Q Consensus 1233 L~aVVcH~G---~gGHYicfvr~--------~~~g~W~~fDDs~V 1266 (1267)
|.|||++.| +++|.+++++- +.+.+||+|||--|
T Consensus 793 L~a~V~~I~d~~~e~~lVs~Ikv~~~~~~~~~~dsqWylFNDfLV 837 (1118)
T KOG1275|consen 793 LDAMVHAIGDNENEVNLVSPIKVLRPYHVIKPDDSQWYLFNDFLV 837 (1118)
T ss_pred eeeEEEEeccCCCccceEEEEEccCcccccCcCcceeEEEcceee
Confidence 999999996 67899999973 22469999999765
No 43
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=98.43 E-value=8.7e-07 Score=97.54 Aligned_cols=128 Identities=17% Similarity=0.352 Sum_probs=85.7
Q ss_pred CchheeeeeeEeEeEEecCCCCCcccccccccceeeccchhccccccCCCCCcHHHHHHH---hccCCcccCCcCCCccc
Q 037237 1078 GCFVHIIFGMDHYEKVNCVKCSAKFGYRKYTSLFLTLNAYNLRNMKKTPRGSSFDVLLKQ---LVLNGLLNCGACGQINY 1154 (1267)
Q Consensus 1078 ~CIIHqLFGg~LrSqV~C~~Cg~~S~t~pf~~l~l~I~as~l~~~k~~~~~~SF~~lLk~---~~~~~~~~C~~Cgk~~~ 1154 (1267)
...|..+|...++=.-.|..||+..... ..-.| .+|+.+.-. +....--.|.+|+.+..
T Consensus 120 d~~~E~lF~~sf~WeFeC~~Cg~~~~~R----~~K~L--------------~TFtnv~pdwhPLnA~h~~pCn~C~~ksQ 181 (275)
T PF15499_consen 120 DPWIEKLFLYSFSWEFECSQCGHKYQNR----CTKTL--------------VTFTNVIPDWHPLNAVHFGPCNSCNSKSQ 181 (275)
T ss_pred chHHHhHhheeeEEEEEccccCChhhhh----heeee--------------cccCCCCCCCCcccccccCCCcccCChHH
Confidence 3467899999999999999999986431 00000 112211111 11223457999998866
Q ss_pred e-ehccccCCcEEEEEeeccccchhhhhhhcccccceeeecccCCCCcchhhhhhhhcccccccCCcccCCCCCCCeEEE
Q 037237 1155 I-HHTLWRLPHVFTIGMLRVCNTIEIEVIFGYSWLEFAVIGWQRDCESSEDVLSTLSALSAELDISNLFEGYPPDNIYFL 1233 (1267)
Q Consensus 1155 k-q~tI~rlP~VLtIhLKRFeh~~~~~~~f~~~~~~~~v~~w~~~~~s~~dIs~tl~~~~~~LDLs~ly~g~d~~~~Y~L 1233 (1267)
+ ++.+.+.|+||++|+ |=| +|.. |+.. |+-.-.+..|++
T Consensus 182 ~rkMvlekv~~vfmLHF---------------------VeG-----------------LP~n-dl~~-ysF~feg~~Y~V 221 (275)
T PF15499_consen 182 RRKMVLEKVPPVFMLHF---------------------VEG-----------------LPHN-DLQH-YSFHFEGCLYQV 221 (275)
T ss_pred hHhhhhhcCchhhhhhh---------------------hcc-----------------CCcc-CCCc-cceeecCeeEEE
Confidence 4 688899999999977 311 1111 3332 322224589999
Q ss_pred EEEEEEecCCCcEEEEEEecCCCcEEEecCC
Q 037237 1234 ASMVCVSSDRQRYIIFVYNHMLEKYVQSDGA 1264 (1267)
Q Consensus 1234 ~aVVcH~G~gGHYicfvr~~~~g~W~~fDDs 1264 (1267)
.+||-|.-+..|++++++++ +|.|+.|||=
T Consensus 222 t~VIQY~~~~~HFvtWi~~~-dGsWLecDDL 251 (275)
T PF15499_consen 222 TSVIQYQANLNHFVTWIRDS-DGSWLECDDL 251 (275)
T ss_pred EEEEEEeccCceeEEEEEcC-CCCeEeeccC
Confidence 99999995568999999986 7999999994
No 44
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.79 E-value=0.0033 Score=74.17 Aligned_cols=98 Identities=20% Similarity=0.225 Sum_probs=83.1
Q ss_pred HHHHhHhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchhhhHHHHHH
Q 037237 54 LRALSAFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLVELSFLHAA 133 (1267)
Q Consensus 54 ~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~~~a~f~A~ 133 (1267)
.+|..+|..|++.+|++..+..+...|+.+.++...|.+++++..- +.. +..+++|+.+.|+........|.
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~-~eA-------l~~~~~Al~l~P~~~~a~~~lg~ 78 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNF-TEA-------VADANKAIELDPSLAKAYLRKGT 78 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-HHH-------HHHHHHHHHhCcCCHHHHHHHHH
Confidence 5688999999999999999999999999999999999998876421 112 55678899999999998888999
Q ss_pred HHHHHHhhhchhHHHHHHHHHHHhccCCCCCc
Q 037237 134 LLYKLAEINDKEWDVVIEACERMLKIGDPYDT 165 (1267)
Q Consensus 134 lL~~la~~~~~~Y~~a~~ec~RaL~i~~P~dp 165 (1267)
+++.+|+ |++|+...++|+.+ +|.++
T Consensus 79 ~~~~lg~-----~~eA~~~~~~al~l-~P~~~ 104 (356)
T PLN03088 79 ACMKLEE-----YQTAKAALEKGASL-APGDS 104 (356)
T ss_pred HHHHhCC-----HHHHHHHHHHHHHh-CCCCH
Confidence 9999886 89999999999997 46553
No 45
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=96.63 E-value=0.0092 Score=61.43 Aligned_cols=100 Identities=17% Similarity=0.056 Sum_probs=87.2
Q ss_pred HHHHhHhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchhhhHHHHHH
Q 037237 54 LRALSAFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLVELSFLHAA 133 (1267)
Q Consensus 54 ~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~~~a~f~A~ 133 (1267)
.++...++.|++.+|+...+.++...|.++.+|..-|.++..+.+-- +. +..+++|+.+.|+....-.-.|.
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~-~A-------~~~y~~Al~l~p~~~~a~~~lg~ 100 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYT-TA-------INFYGHALMLDASHPEPVYQTGV 100 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHH-HH-------HHHHHHHHhcCCCCcHHHHHHHH
Confidence 46889999999999999999999999999999999999999877443 23 66788899999999999999999
Q ss_pred HHHHHHhhhchhHHHHHHHHHHHhccCCCCCccc
Q 037237 134 LLYKLAEINDKEWDVVIEACERMLKIGDPYDTLL 167 (1267)
Q Consensus 134 lL~~la~~~~~~Y~~a~~ec~RaL~i~~P~dp~~ 167 (1267)
.++.+|+ |++|+..+.+|+.+ +|.+|..
T Consensus 101 ~l~~~g~-----~~eAi~~~~~Al~~-~p~~~~~ 128 (144)
T PRK15359 101 CLKMMGE-----PGLAREAFQTAIKM-SYADASW 128 (144)
T ss_pred HHHHcCC-----HHHHHHHHHHHHHh-CCCChHH
Confidence 9999886 69999999999998 4766544
No 46
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=95.64 E-value=0.066 Score=53.09 Aligned_cols=102 Identities=18% Similarity=0.094 Sum_probs=82.5
Q ss_pred HHHHHHHHhHhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchhhhHH
Q 037237 50 NNEGLRALSAFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLVELSF 129 (1267)
Q Consensus 50 ~~e~~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~~~a~ 129 (1267)
..-...|..+++.|++.+|++.++.++..+|..+.++..-|..++.+..- +.- +..+.+++...|+......
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~-----~~A---~~~~~~~~~~~p~~~~~~~ 89 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEY-----EEA---IDAYALAAALDPDDPRPYF 89 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH-----HHH---HHHHHHHHhcCCCChHHHH
Confidence 44567888999999999999999999999999999999889888887532 111 2234558889999999999
Q ss_pred HHHHHHHHHHhhhchhHHHHHHHHHHHhccCCCCCc
Q 037237 130 LHAALLYKLAEINDKEWDVVIEACERMLKIGDPYDT 165 (1267)
Q Consensus 130 f~A~lL~~la~~~~~~Y~~a~~ec~RaL~i~~P~dp 165 (1267)
+.|.+++.+++ |++|+..-++++.. +|.++
T Consensus 90 ~la~~~~~~g~-----~~~A~~~~~~al~~-~p~~~ 119 (135)
T TIGR02552 90 HAAECLLALGE-----PESALKALDLAIEI-CGENP 119 (135)
T ss_pred HHHHHHHHcCC-----HHHHHHHHHHHHHh-ccccc
Confidence 99999888765 79999999999998 35543
No 47
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=95.20 E-value=0.06 Score=58.57 Aligned_cols=98 Identities=16% Similarity=0.111 Sum_probs=81.0
Q ss_pred HHHhHhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHh--CCCcchhhhhhhhhhhhhccCCchhhhHHHHH
Q 037237 55 RALSAFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEKA--GKGTDTQLEHLTTAASAVGRFPNLVELSFLHA 132 (1267)
Q Consensus 55 ~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~--~~~~~~k~~~l~~~~~Av~l~p~s~~~a~f~A 132 (1267)
-+.-+...|++.+|+..++..+...|+.+-++...|.+++...... ++. ...+++|+.+.|+.+..-.+.|
T Consensus 79 Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A-------~~~l~~al~~dP~~~~al~~LA 151 (198)
T PRK10370 79 LGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT-------REMIDKALALDANEVTALMLLA 151 (198)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH-------HHHHHHHHHhCCCChhHHHHHH
Confidence 3455678999999999999999888999999998898765443321 222 5556779999999999999999
Q ss_pred HHHHHHHhhhchhHHHHHHHHHHHhccCCCCC
Q 037237 133 ALLYKLAEINDKEWDVVIEACERMLKIGDPYD 164 (1267)
Q Consensus 133 ~lL~~la~~~~~~Y~~a~~ec~RaL~i~~P~d 164 (1267)
..++.+|+ |++|+...+++|....|.|
T Consensus 152 ~~~~~~g~-----~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 152 SDAFMQAD-----YAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHcCC-----HHHHHHHHHHHHhhCCCCc
Confidence 99999886 8999999999999987765
No 48
>PRK11189 lipoprotein NlpI; Provisional
Probab=94.92 E-value=0.075 Score=61.04 Aligned_cols=101 Identities=11% Similarity=0.015 Sum_probs=84.1
Q ss_pred HHHHHHhHhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchhhhHHHH
Q 037237 52 EGLRALSAFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLVELSFLH 131 (1267)
Q Consensus 52 e~~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~~~a~f~ 131 (1267)
-.+++.-..+.|++.+|+...+..+..+|+.+.++...|.++..+..-. .. +..+.+|+++.|+........
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~-~A-------~~~~~~Al~l~P~~~~a~~~l 138 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFD-AA-------YEAFDSVLELDPTYNYAYLNR 138 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHH-HH-------HHHHHHHHHhCCCCHHHHHHH
Confidence 4567777888899999999999999999999999999998887765331 22 566788999999998887888
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHHHhccCCCCCcc
Q 037237 132 AALLYKLAEINDKEWDVVIEACERMLKIGDPYDTL 166 (1267)
Q Consensus 132 A~lL~~la~~~~~~Y~~a~~ec~RaL~i~~P~dp~ 166 (1267)
+..++..+. |++|++-+++++.+ +|.||.
T Consensus 139 g~~l~~~g~-----~~eA~~~~~~al~~-~P~~~~ 167 (296)
T PRK11189 139 GIALYYGGR-----YELAQDDLLAFYQD-DPNDPY 167 (296)
T ss_pred HHHHHHCCC-----HHHHHHHHHHHHHh-CCCCHH
Confidence 888887664 89999999999987 688774
No 49
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=94.79 E-value=0.17 Score=57.61 Aligned_cols=100 Identities=11% Similarity=0.094 Sum_probs=71.5
Q ss_pred hhHHHHHHHHHhH-hhcCCHHHHHHHHHHHHhhCCCCc---hhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCC
Q 037237 47 PEINNEGLRALSA-FQSGDSKKALEMIKESISSHQDSP---HLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFP 122 (1267)
Q Consensus 47 ~~i~~e~~~a~~~-~~~Gnh~kAL~~~kd~~~~h~~s~---~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p 122 (1267)
..-+..-+.|+.. +..|++.+|+...+.++..||+|+ -+|+.-|..++.....- .. +..+++.+..+|
T Consensus 140 ~~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~-~A-------~~~f~~vv~~yP 211 (263)
T PRK10803 140 GDANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKD-DA-------AYYFASVVKNYP 211 (263)
T ss_pred CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHH-HH-------HHHHHHHHHHCC
Confidence 3457778899987 667999999999999999999884 68888888888754221 11 455777999999
Q ss_pred chhhhHHHH---HHHHHHHHhhhchhHHHHHHHHHHHhcc
Q 037237 123 NLVELSFLH---AALLYKLAEINDKEWDVVIEACERMLKI 159 (1267)
Q Consensus 123 ~s~~~a~f~---A~lL~~la~~~~~~Y~~a~~ec~RaL~i 159 (1267)
++....-.+ |..++.++ .|++|.+..++.+..
T Consensus 212 ~s~~~~dAl~klg~~~~~~g-----~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 212 KSPKAADAMFKVGVIMQDKG-----DTAKAKAVYQQVIKK 246 (263)
T ss_pred CCcchhHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHH
Confidence 987665543 33333433 367777777665554
No 50
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=94.74 E-value=0.023 Score=40.14 Aligned_cols=24 Identities=21% Similarity=0.513 Sum_probs=20.7
Q ss_pred eecCccccccCChHHHHHHhHhhh
Q 037237 330 SECFVCVEKIGNPQLCEKHFRSSH 353 (1267)
Q Consensus 330 W~C~~C~~kF~d~~~~~~H~~~eH 353 (1267)
|.|+.|++.|.+..+++.|+...|
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~~~H 24 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMRTHH 24 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred CCCcCCCCcCCcHHHHHHHHHhhC
Confidence 789999999999999999999876
No 51
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=94.29 E-value=0.031 Score=39.83 Aligned_cols=23 Identities=22% Similarity=0.566 Sum_probs=21.5
Q ss_pred eecCccccccCChHHHHHHhHhhh
Q 037237 330 SECFVCVEKIGNPQLCEKHFRSSH 353 (1267)
Q Consensus 330 W~C~~C~~kF~d~~~~~~H~~~eH 353 (1267)
|.|+.|++.|.+...++.|+.. |
T Consensus 1 y~C~~C~~~f~~~~~l~~H~~~-H 23 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRHMRR-H 23 (23)
T ss_dssp EEETTTTEEESSHHHHHHHHHH-H
T ss_pred CCCCCCCCccCCHHHHHHHHhH-C
Confidence 6899999999999999999986 6
No 52
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=94.19 E-value=0.12 Score=62.62 Aligned_cols=100 Identities=24% Similarity=0.211 Sum_probs=86.6
Q ss_pred HHHHhHhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchhhhHHHHHH
Q 037237 54 LRALSAFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLVELSFLHAA 133 (1267)
Q Consensus 54 ~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~~~a~f~A~ 133 (1267)
.+|+..++-|...+|++.+..|+..+|+.+....+.|.|..+.-+.- +. ++.+++|+.++|++..+-.-+|.
T Consensus 311 G~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~-~A-------~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 311 GRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAK-EA-------IERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH-HH-------HHHHHHHHhcCCCccHHHHHHHH
Confidence 46999999999999999999999999999999999999998764332 12 67788999999999999999999
Q ss_pred HHHHHHhhhchhHHHHHHHHHHHhccCCCCCccc
Q 037237 134 LLYKLAEINDKEWDVVIEACERMLKIGDPYDTLL 167 (1267)
Q Consensus 134 lL~~la~~~~~~Y~~a~~ec~RaL~i~~P~dp~~ 167 (1267)
.|+.+++ |+++++.-+|++.- +|.||.-
T Consensus 383 all~~g~-----~~eai~~L~~~~~~-~p~dp~~ 410 (484)
T COG4783 383 ALLKGGK-----PQEAIRILNRYLFN-DPEDPNG 410 (484)
T ss_pred HHHhcCC-----hHHHHHHHHHHhhc-CCCCchH
Confidence 9999886 68999999998876 6877655
No 53
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=94.10 E-value=0.41 Score=41.32 Aligned_cols=94 Identities=20% Similarity=0.208 Sum_probs=71.0
Q ss_pred HHHHHhHhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchhhhHHHHH
Q 037237 53 GLRALSAFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLVELSFLHA 132 (1267)
Q Consensus 53 ~~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~~~a~f~A 132 (1267)
...|...+..|++.+|++..++++...|..+.++...|.+++.... . +.-..+ +.++....|.......-.|
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~a~~~---~~~~~~~~~~~~~~~~~~~ 75 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGK----Y-EEALED---YEKALELDPDNAKAYYNLG 75 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHH----H-HHHHHH---HHHHHhCCCcchhHHHHHH
Confidence 4567788889999999999999998888888888888888887642 2 222233 4557888888886666677
Q ss_pred HHHHHHHhhhchhHHHHHHHHHHHhcc
Q 037237 133 ALLYKLAEINDKEWDVVIEACERMLKI 159 (1267)
Q Consensus 133 ~lL~~la~~~~~~Y~~a~~ec~RaL~i 159 (1267)
..++..++ |+++.....+++.+
T Consensus 76 ~~~~~~~~-----~~~a~~~~~~~~~~ 97 (100)
T cd00189 76 LAYYKLGK-----YEEALEAYEKALEL 97 (100)
T ss_pred HHHHHHHh-----HHHHHHHHHHHHcc
Confidence 77666664 78888888888765
No 54
>PRK12370 invasion protein regulator; Provisional
Probab=93.74 E-value=0.14 Score=63.93 Aligned_cols=96 Identities=8% Similarity=-0.023 Sum_probs=61.0
Q ss_pred hHhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchhhhHHHHHHHHHH
Q 037237 58 SAFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLVELSFLHAALLYK 137 (1267)
Q Consensus 58 ~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~~~a~f~A~lL~~ 137 (1267)
-....|++.+|+..++..+..+|+++.+|..-|.++....+ .+.. +..+.+|+.+.|.........+..+|.
T Consensus 347 ~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~-~~eA-------i~~~~~Al~l~P~~~~~~~~~~~~~~~ 418 (553)
T PRK12370 347 INTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQ-LEEA-------LQTINECLKLDPTRAAAGITKLWITYY 418 (553)
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHH-------HHHHHHHHhcCCCChhhHHHHHHHHHh
Confidence 34556777777777777777777777777666666655432 1111 444566888888876655444555555
Q ss_pred HHhhhchhHHHHHHHHHHHhccCCCCCcc
Q 037237 138 LAEINDKEWDVVIEACERMLKIGDPYDTL 166 (1267)
Q Consensus 138 la~~~~~~Y~~a~~ec~RaL~i~~P~dp~ 166 (1267)
++. |++|+..+++++....|.+|.
T Consensus 419 ~g~-----~eeA~~~~~~~l~~~~p~~~~ 442 (553)
T PRK12370 419 HTG-----IDDAIRLGDELRSQHLQDNPI 442 (553)
T ss_pred ccC-----HHHHHHHHHHHHHhccccCHH
Confidence 442 688888888877776566654
No 55
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=93.59 E-value=0.065 Score=46.95 Aligned_cols=64 Identities=19% Similarity=0.204 Sum_probs=52.1
Q ss_pred HHHHhHhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchh
Q 037237 54 LRALSAFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLV 125 (1267)
Q Consensus 54 ~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~ 125 (1267)
.+|...++.|++.+|+++.+.++..+|+.+-++...|.+++.+.+-- .. +..+++++..+|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~-~A-------~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYD-EA-------LAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HH-HH-------HHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHH-HH-------HHHHHHHHHHCcCCC
Confidence 46888999999999999999999999999999999999999775332 22 344566889999864
No 56
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.19 E-value=0.37 Score=53.84 Aligned_cols=100 Identities=19% Similarity=0.134 Sum_probs=79.8
Q ss_pred hhHHHHHHHHHhHhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchhh
Q 037237 47 PEINNEGLRALSAFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLVE 126 (1267)
Q Consensus 47 ~~i~~e~~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~~ 126 (1267)
.+-+.-++.|+.+++.||...|.+-+++.++.-|+++++|.+-++++-++... +.- =+.+++|+.+.|+.-.
T Consensus 33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~-----~~A---~e~YrkAlsl~p~~Gd 104 (250)
T COG3063 33 EAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGEN-----DLA---DESYRKALSLAPNNGD 104 (250)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCh-----hhH---HHHHHHHHhcCCCccc
Confidence 55566688999999999999999999999977799999999999999888733 111 2347899999999997
Q ss_pred hHHHHHHHHHHHHhhhchhHHHHHHHHHHHhcc
Q 037237 127 LSFLHAALLYKLAEINDKEWDVVIEACERMLKI 159 (1267)
Q Consensus 127 ~a~f~A~lL~~la~~~~~~Y~~a~~ec~RaL~i 159 (1267)
+--=|-.-|..-| .|++++.-=.||+.-
T Consensus 105 VLNNYG~FLC~qg-----~~~eA~q~F~~Al~~ 132 (250)
T COG3063 105 VLNNYGAFLCAQG-----RPEEAMQQFERALAD 132 (250)
T ss_pred hhhhhhHHHHhCC-----ChHHHHHHHHHHHhC
Confidence 7665555555544 589999998888764
No 57
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=92.79 E-value=0.25 Score=43.99 Aligned_cols=69 Identities=23% Similarity=0.244 Sum_probs=58.2
Q ss_pred hHhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchhhhHHHHHHH
Q 037237 58 SAFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLVELSFLHAAL 134 (1267)
Q Consensus 58 ~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~~~a~f~A~l 134 (1267)
-+++++++.+|++.++.++..+|.++.++...|.+++++.+..+ . +..+.++....|+......+.|++
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~-A-------~~~l~~~l~~~p~~~~~~~~~a~l 72 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEE-A-------LEDLERALELSPDDPDARALRAML 72 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHH-H-------HHHHHHHHHHCCCcHHHHHHHHhc
Confidence 46889999999999999999999999999999999999874432 2 455677999999999888777764
No 58
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=92.47 E-value=0.63 Score=48.50 Aligned_cols=100 Identities=14% Similarity=0.101 Sum_probs=78.1
Q ss_pred hhHHHHHHHHHhHhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchhh
Q 037237 47 PEINNEGLRALSAFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLVE 126 (1267)
Q Consensus 47 ~~i~~e~~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~~ 126 (1267)
.....-...|..++..|++.+|++.+++++..+|+.+.++...|.++.... +. +.- +..+.+|+.+.|+...
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~----~~-~~A---~~~~~~al~~~~~~~~ 100 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLG----EL-EKA---EDSFRRALTLNPNNGD 100 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC----CH-HHH---HHHHHHHHhhCCCCHH
Confidence 344556677888999999999999999999999998888888888877654 22 111 3445668889999887
Q ss_pred hHHHHHHHHHHHHhhhchhHHHHHHHHHHHhcc
Q 037237 127 LSFLHAALLYKLAEINDKEWDVVIEACERMLKI 159 (1267)
Q Consensus 127 ~a~f~A~lL~~la~~~~~~Y~~a~~ec~RaL~i 159 (1267)
.....+..++..++ |++|..-..+++..
T Consensus 101 ~~~~~~~~~~~~g~-----~~~A~~~~~~~~~~ 128 (234)
T TIGR02521 101 VLNNYGTFLCQQGK-----YEQAMQQFEQAIED 128 (234)
T ss_pred HHHHHHHHHHHccc-----HHHHHHHHHHHHhc
Confidence 77777777777664 89999999999875
No 59
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=92.30 E-value=0.98 Score=57.02 Aligned_cols=93 Identities=17% Similarity=0.164 Sum_probs=71.8
Q ss_pred HHHHHhHhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchhhhHHHHH
Q 037237 53 GLRALSAFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLVELSFLHA 132 (1267)
Q Consensus 53 ~~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~~~a~f~A 132 (1267)
.+++..+|..|++.+|++..++.+...|+ +..+.-.|.++.++..- +.. +..+.+|..+.|+....-...|
T Consensus 131 k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~-~~A-------i~~~~~al~l~p~~~~a~~~~a 201 (615)
T TIGR00990 131 KEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDW-EKV-------VEDTTAALELDPDYSKALNRRA 201 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCH-HHH-------HHHHHHHHHcCCCCHHHHHHHH
Confidence 36778899999999999999999988886 55666666666665311 111 5667779999999998888889
Q ss_pred HHHHHHHhhhchhHHHHHHHHHHHhcc
Q 037237 133 ALLYKLAEINDKEWDVVIEACERMLKI 159 (1267)
Q Consensus 133 ~lL~~la~~~~~~Y~~a~~ec~RaL~i 159 (1267)
..++.+++ |++|+.....++.+
T Consensus 202 ~a~~~lg~-----~~eA~~~~~~~~~~ 223 (615)
T TIGR00990 202 NAYDGLGK-----YADALLDLTASCII 223 (615)
T ss_pred HHHHHcCC-----HHHHHHHHHHHHHh
Confidence 99888886 79998888666555
No 60
>PRK12370 invasion protein regulator; Provisional
Probab=92.17 E-value=0.24 Score=61.89 Aligned_cols=93 Identities=16% Similarity=0.137 Sum_probs=75.7
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchhhhHHHHHHHHHHHHh
Q 037237 61 QSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLVELSFLHAALLYKLAE 140 (1267)
Q Consensus 61 ~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~~~a~f~A~lL~~la~ 140 (1267)
..|++.+|+...+..+...|+.+.+|..-|.++..... .+.. +..+++|+.+.|++.......|.+++.+|+
T Consensus 316 ~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~-~~~A-------~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~ 387 (553)
T PRK12370 316 KQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE-YIVG-------SLLFKQANLLSPISADIKYYYGWNLFMAGQ 387 (553)
T ss_pred cchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC-HHHH-------HHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 44668999999999999999999999999998876542 1112 455778999999999988888988888775
Q ss_pred hhchhHHHHHHHHHHHhccCCCCCccc
Q 037237 141 INDKEWDVVIEACERMLKIGDPYDTLL 167 (1267)
Q Consensus 141 ~~~~~Y~~a~~ec~RaL~i~~P~dp~~ 167 (1267)
|++|+...++|+.+ +|.+|..
T Consensus 388 -----~~eAi~~~~~Al~l-~P~~~~~ 408 (553)
T PRK12370 388 -----LEEALQTINECLKL-DPTRAAA 408 (553)
T ss_pred -----HHHHHHHHHHHHhc-CCCChhh
Confidence 89999999999999 6776543
No 61
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=91.76 E-value=1.1 Score=42.56 Aligned_cols=102 Identities=14% Similarity=0.095 Sum_probs=70.1
Q ss_pred HHHHHHHHHhHhhcCCHHHHHHHHHHHHhhCCCCc---hhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchh
Q 037237 49 INNEGLRALSAFQSGDSKKALEMIKESISSHQDSP---HLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLV 125 (1267)
Q Consensus 49 i~~e~~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~---~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~ 125 (1267)
++.-...|...++.|++.+|++.++.++..+|+++ -++..-|.++++.. +. +.- +..+.++...+|+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~-~~A---~~~~~~~~~~~p~~~ 73 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQG----KY-ADA---AKAFLAVVKKYPKSP 73 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhc----cH-HHH---HHHHHHHHHHCCCCC
Confidence 34456788999999999999999999999998764 45666676666554 22 212 333455778888864
Q ss_pred ---hhHHHHHHHHHHHHhhhchhHHHHHHHHHHHhccCCCCC
Q 037237 126 ---ELSFLHAALLYKLAEINDKEWDVVIEACERMLKIGDPYD 164 (1267)
Q Consensus 126 ---~~a~f~A~lL~~la~~~~~~Y~~a~~ec~RaL~i~~P~d 164 (1267)
.+-...|..++.+++ |++++..-.+++.. .|.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~-----~~~A~~~~~~~~~~-~p~~ 109 (119)
T TIGR02795 74 KAPDALLKLGMSLQELGD-----KEKAKATLQQVIKR-YPGS 109 (119)
T ss_pred cccHHHHHHHHHHHHhCC-----hHHHHHHHHHHHHH-CcCC
Confidence 334455666665554 78888888888777 4544
No 62
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=89.72 E-value=0.96 Score=57.09 Aligned_cols=104 Identities=18% Similarity=0.203 Sum_probs=74.1
Q ss_pred HHHHHHHhHhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHH------------HhCCCcchhhh---------
Q 037237 51 NEGLRALSAFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAE------------KAGKGTDTQLE--------- 109 (1267)
Q Consensus 51 ~e~~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~------------~~~~~~~~k~~--------- 109 (1267)
.-+.+|.-.+..|++.+|+..++.++..+|+.+.++...|.+++.+.. .+ +|......
T Consensus 367 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l-~P~~~~~~~~la~~~~~ 445 (615)
T TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL-DPDFIFSHIQLGVTQYK 445 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CccCHHHHHHHHHHHHH
Confidence 446777778888888888888888888888888888888887775421 11 22011110
Q ss_pred ---h---hhhhhhhhccCCchhhhHHHHHHHHHHHHhhhchhHHHHHHHHHHHhccC
Q 037237 110 ---H---LTTAASAVGRFPNLVELSFLHAALLYKLAEINDKEWDVVIEACERMLKIG 160 (1267)
Q Consensus 110 ---~---l~~~~~Av~l~p~s~~~a~f~A~lL~~la~~~~~~Y~~a~~ec~RaL~i~ 160 (1267)
| +..+++|+..+|+....-..++.++..+|+ |++|+...++|+.+.
T Consensus 446 ~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~-----~~~A~~~~~~Al~l~ 497 (615)
T TIGR00990 446 EGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNK-----FDEAIEKFDTAIELE 497 (615)
T ss_pred CCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccC-----HHHHHHHHHHHHhcC
Confidence 1 445677888888888887788888777664 788888888888884
No 63
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=89.67 E-value=0.28 Score=43.30 Aligned_cols=64 Identities=16% Similarity=0.108 Sum_probs=52.2
Q ss_pred HHHHHHhHhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCC
Q 037237 52 EGLRALSAFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFP 122 (1267)
Q Consensus 52 e~~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p 122 (1267)
-...|..++..|++.+|+...+..+..+|+.+.++..-|.++..+....+.. +..+.+|+.+.|
T Consensus 6 ~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A-------~~~~~~al~l~P 69 (69)
T PF13414_consen 6 WYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEA-------IEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHH-------HHHHHHHHHHST
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHH-------HHHHHHHHHcCc
Confidence 4567889999999999999999999999999999999999999886322222 455666887777
No 64
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=89.06 E-value=0.6 Score=59.71 Aligned_cols=99 Identities=13% Similarity=0.132 Sum_probs=77.7
Q ss_pred HHHHhHhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchhhhHHHHHH
Q 037237 54 LRALSAFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLVELSFLHAA 133 (1267)
Q Consensus 54 ~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~~~a~f~A~ 133 (1267)
.=++...+.|++.+|+.+++...+.+|..+.+++.-|..... . .+. +.- +..+++++.+.|++...-...|.
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~-~---g~~-~~A---~~~l~~~l~~~P~~~~a~~~la~ 118 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLA-S---SQP-DAV---LQVVNKLLAVNVCQPEDVLLVAS 118 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhh-c---CCH-HHH---HHHHHHHHHhCCCChHHHHHHHH
Confidence 346778899999999999999999999999998888844432 2 222 111 55677799999999988778888
Q ss_pred HHHHHHhhhchhHHHHHHHHHHHhccCCCCCcc
Q 037237 134 LLYKLAEINDKEWDVVIEACERMLKIGDPYDTL 166 (1267)
Q Consensus 134 lL~~la~~~~~~Y~~a~~ec~RaL~i~~P~dp~ 166 (1267)
+++.+++ |++|+..+++++.+ +|.++.
T Consensus 119 ~l~~~g~-----~~~Ai~~l~~Al~l-~P~~~~ 145 (656)
T PRK15174 119 VLLKSKQ-----YATVADLAEQAWLA-FSGNSQ 145 (656)
T ss_pred HHHHcCC-----HHHHHHHHHHHHHh-CCCcHH
Confidence 8877765 79999999999998 566543
No 65
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=88.82 E-value=1.1 Score=57.35 Aligned_cols=100 Identities=13% Similarity=0.078 Sum_probs=79.1
Q ss_pred HHhHhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchhhhHHHHHHHH
Q 037237 56 ALSAFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLVELSFLHAALL 135 (1267)
Q Consensus 56 a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~~~a~f~A~lL 135 (1267)
+..+++.|++.+|+..+++++..+|+.+.++..-|.+++.+.+-. ..+..-+..+++|+.+.|++...-..+|.+|
T Consensus 219 ~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~----eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l 294 (656)
T PRK15174 219 VDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSR----EAKLQAAEHWRHALQFNSDNVRIVTLYADAL 294 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCch----hhHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 445567899999999999999999999988888888887765321 1122235567889999999998888999998
Q ss_pred HHHHhhhchhHHHHHHHHHHHhccCCCCCc
Q 037237 136 YKLAEINDKEWDVVIEACERMLKIGDPYDT 165 (1267)
Q Consensus 136 ~~la~~~~~~Y~~a~~ec~RaL~i~~P~dp 165 (1267)
+..++ |++|+...++++.. +|.+|
T Consensus 295 ~~~g~-----~~eA~~~l~~al~l-~P~~~ 318 (656)
T PRK15174 295 IRTGQ-----NEKAIPLLQQSLAT-HPDLP 318 (656)
T ss_pred HHCCC-----HHHHHHHHHHHHHh-CCCCH
Confidence 88775 79999999999987 56654
No 66
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=88.53 E-value=15 Score=44.30 Aligned_cols=104 Identities=17% Similarity=0.175 Sum_probs=73.5
Q ss_pred HHHHHHHHhHhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchh-hhH
Q 037237 50 NNEGLRALSAFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLV-ELS 128 (1267)
Q Consensus 50 ~~e~~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~-~~a 128 (1267)
+....+|+-++..||+.+|++.+.......|+..+...+.|.+ |....++ +.-..|+.. |++.+|++- .+-
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~a----a~~~g~~-~~A~~~l~~---a~~~~p~~~l~~~ 156 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEA----AQQRGDE-ARANQHLEE---AAELAGNDNILVE 156 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHH----HHHCCCH-HHHHHHHHH---HHHhCCcCchHHH
Confidence 3457789999999999999999988875445544444444444 3333455 555556554 788889984 455
Q ss_pred HHHHHHHHHHHhhhchhHHHHHHHHHHHhccCCCCCccc
Q 037237 129 FLHAALLYKLAEINDKEWDVVIEACERMLKIGDPYDTLL 167 (1267)
Q Consensus 129 ~f~A~lL~~la~~~~~~Y~~a~~ec~RaL~i~~P~dp~~ 167 (1267)
..+|++++..+ .|+.|.+..++.+.. +|.+|.-
T Consensus 157 ~~~a~l~l~~~-----~~~~Al~~l~~l~~~-~P~~~~~ 189 (409)
T TIGR00540 157 IARTRILLAQN-----ELHAARHGVDKLLEM-APRHKEV 189 (409)
T ss_pred HHHHHHHHHCC-----CHHHHHHHHHHHHHh-CCCCHHH
Confidence 55788877755 489999999998888 5887754
No 67
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=88.33 E-value=2 Score=49.63 Aligned_cols=98 Identities=22% Similarity=0.190 Sum_probs=56.7
Q ss_pred HHHHHHhHhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchhhhHHHH
Q 037237 52 EGLRALSAFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLVELSFLH 131 (1267)
Q Consensus 52 e~~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~~~a~f~ 131 (1267)
..-+|..++..|++.+|+++++.++..+|..+.++.. |..++.+....... + ....+........|+.......+
T Consensus 46 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~~~~~~~~~~~ 120 (355)
T cd05804 46 AHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMR-D---HVARVLPLWAPENPDYWYLLGML 120 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCc-h---hHHHHHhccCcCCCCcHHHHHHH
Confidence 3457889999999999999999999999988776665 55554444322221 0 01111111233444444333444
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHHHhcc
Q 037237 132 AALLYKLAEINDKEWDVVIEACERMLKI 159 (1267)
Q Consensus 132 A~lL~~la~~~~~~Y~~a~~ec~RaL~i 159 (1267)
|..+...|+ |++++..+++++.+
T Consensus 121 a~~~~~~G~-----~~~A~~~~~~al~~ 143 (355)
T cd05804 121 AFGLEEAGQ-----YDRAEEAARRALEL 143 (355)
T ss_pred HHHHHHcCC-----HHHHHHHHHHHHhh
Confidence 444444442 55666666666655
No 68
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=87.86 E-value=3.9 Score=43.03 Aligned_cols=86 Identities=21% Similarity=0.087 Sum_probs=62.1
Q ss_pred hhHHHHHHHHHhHhhcCCHHHHHHHHHHHHhhCCCC---chhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCc
Q 037237 47 PEINNEGLRALSAFQSGDSKKALEMIKESISSHQDS---PHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPN 123 (1267)
Q Consensus 47 ~~i~~e~~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s---~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~ 123 (1267)
..+..--..|..+.+.|++.+|+...++++..+++. +.++..-|.++..+. +. +-- +..+.+|+...|+
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g----~~-~~A---~~~~~~al~~~p~ 104 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNG----EH-DKA---LEYYHQALELNPK 104 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcC----CH-HHH---HHHHHHHHHhCcc
Confidence 445556778888899999999999999999877653 356666666665543 21 111 4445678899999
Q ss_pred hhhhHHHHHHHHHHHHh
Q 037237 124 LVELSFLHAALLYKLAE 140 (1267)
Q Consensus 124 s~~~a~f~A~lL~~la~ 140 (1267)
........+.+++.+|+
T Consensus 105 ~~~~~~~lg~~~~~~g~ 121 (172)
T PRK02603 105 QPSALNNIAVIYHKRGE 121 (172)
T ss_pred cHHHHHHHHHHHHHcCC
Confidence 88777788888888775
No 69
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=87.47 E-value=2.4 Score=54.70 Aligned_cols=89 Identities=13% Similarity=0.058 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchhhhHHHHHHHHHHHHhhhch
Q 037237 65 SKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLVELSFLHAALLYKLAEINDK 144 (1267)
Q Consensus 65 h~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~~~a~f~A~lL~~la~~~~~ 144 (1267)
...||..+.++..+++..+-+|++=|.+..++.+- ++. ...| +++.+++|+.....+-+|..|+.+..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~-~ea----~~~l---~~~~~~~Pd~~~a~~~~a~~L~~~~~---- 135 (694)
T PRK15179 68 PAAALPELLDYVRRYPHTELFQVLVARALEAAHRS-DEG----LAVW---RGIHQRFPDSSEAFILMLRGVKRQQG---- 135 (694)
T ss_pred hHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCc-HHH----HHHH---HHHHhhCCCcHHHHHHHHHHHHHhcc----
Confidence 34567777888888888888888888777766532 122 2334 45999999999999999999999764
Q ss_pred hHHHHHHHHHHHhccCCCCCccc
Q 037237 145 EWDVVIEACERMLKIGDPYDTLL 167 (1267)
Q Consensus 145 ~Y~~a~~ec~RaL~i~~P~dp~~ 167 (1267)
|++|+.+|+|+|.. +|..+.-
T Consensus 136 -~eeA~~~~~~~l~~-~p~~~~~ 156 (694)
T PRK15179 136 -IEAGRAEIELYFSG-GSSSARE 156 (694)
T ss_pred -HHHHHHHHHHHhhc-CCCCHHH
Confidence 79999999999998 4655444
No 70
>KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=87.01 E-value=1.1 Score=56.46 Aligned_cols=108 Identities=8% Similarity=0.026 Sum_probs=57.7
Q ss_pred ccCCCCCCcchHHHHHHHhhCcHHHHHHHhccCccc----cCC-----CCC--CcHHHHHHHHHHHHhcccCCCCccccc
Q 037237 945 RQFENGTTDSFVNMIVKSLWHLREFREEFMRRRQTI----HNH-----IGD--PCIVCALYDMFAALSTACEDNQVEVPS 1013 (1267)
Q Consensus 945 L~N~~GgNTCFLNSILQcL~H~p~fRe~fLs~~~~~----h~~-----~~~--~CV~CAL~~LFsal~~ss~~~~~e~~v 1013 (1267)
|.| .||+||.|++||||..+|+|+--+.+-.... +.. +.. .|-.+.+...-..+...+..+.. ...
T Consensus 34 l~n--~gn~cy~ns~~Q~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 110 (587)
T KOG1864|consen 34 LVN--TGNSCYYNSTLQALSSCPPFVSRVEQLPRLVRPKIEALKDSLNRKKTRIFDEKSLEAVTLNFSKNSSSNES-FNL 110 (587)
T ss_pred Eee--cCCchhhhhHHHHHhhccHHHHHHHHHHHhcccccccCchhhccccccchhHHHHHHHHHhhhccCCcccc-ccc
Confidence 777 4999999999999999999998876521000 111 111 13333332222222222111111 122
Q ss_pred cchHHHHHHHhcccchHHHhhhhccchHHHHHHHHHHHhhhc
Q 037237 1014 APSSLRVALTTYSYDKNICKQAKMNDSSELLQAILESLHESF 1055 (1267)
Q Consensus 1014 sPs~Lr~aLs~i~~ds~~F~~g~QqDAhEfL~~LLd~LH~s~ 1055 (1267)
+-+.+...+-.......-|....|.|||+++..++-.+-...
T Consensus 111 s~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~l~~~~~~~~ 152 (587)
T KOG1864|consen 111 SVTQLVQSRLNNGKKYAEFNNNDQRDAHNFLLELMAMVDDVM 152 (587)
T ss_pred hHHHHHHHHhhhhhhhhhhhcccHhhhhhhhhhhhHHHhhhc
Confidence 333433333333332223555678999999888766655443
No 71
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=86.59 E-value=3.4 Score=55.45 Aligned_cols=93 Identities=12% Similarity=0.032 Sum_probs=60.0
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHH------------HHhCCCcchhh------------hh---hhh
Q 037237 61 QSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLA------------EKAGKGTDTQL------------EH---LTT 113 (1267)
Q Consensus 61 ~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA------------~~~~~~~~~k~------------~~---l~~ 113 (1267)
+.|++..|+..++..+...|+ +-++..-|.++.++. ... +|.+... .| +..
T Consensus 588 ~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l-~Pd~~~a~~nLG~aL~~~G~~eeAi~~ 665 (987)
T PRK09782 588 IPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALEL-EPNNSNYQAALGYALWDSGDIAQSREM 665 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 447777777777777766664 556666666554432 111 1201110 01 445
Q ss_pred hhhhhccCCchhhhHHHHHHHHHHHHhhhchhHHHHHHHHHHHhccC
Q 037237 114 AASAVGRFPNLVELSFLHAALLYKLAEINDKEWDVVIEACERMLKIG 160 (1267)
Q Consensus 114 ~~~Av~l~p~s~~~a~f~A~lL~~la~~~~~~Y~~a~~ec~RaL~i~ 160 (1267)
+.+|+.+.|++..+-...|.++..+|+ |++|+..+++|+.+.
T Consensus 666 l~~AL~l~P~~~~a~~nLA~al~~lGd-----~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 666 LERAHKGLPDDPALIRQLAYVNQRLDD-----MAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHhcC
Confidence 777888888888888888888888775 688888888888774
No 72
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=85.81 E-value=11 Score=42.73 Aligned_cols=68 Identities=12% Similarity=-0.010 Sum_probs=53.2
Q ss_pred HHHHHHhHhhcCCHHHHHHHHHHHHhhCCCCchhh---hhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchhhh
Q 037237 52 EGLRALSAFQSGDSKKALEMIKESISSHQDSPHLH---CLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLVEL 127 (1267)
Q Consensus 52 e~~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h---~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~~~ 127 (1267)
--++|...++.||+.+|.+..++++.++|+|+.+. ..-|..++++..- +.. +..+++.+.++|++...
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y-~~A-------~~~~e~fi~~~P~~~~~ 105 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADL-PLA-------QAAIDRFIRLNPTHPNI 105 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCH-HHH-------HHHHHHHHHhCcCCCch
Confidence 44789999999999999999999999999998776 4446666665421 111 55678899999999866
No 73
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=85.75 E-value=0.96 Score=51.02 Aligned_cols=101 Identities=26% Similarity=0.260 Sum_probs=67.2
Q ss_pred HHHHHhHhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchhhhHHHHH
Q 037237 53 GLRALSAFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLVELSFLHA 132 (1267)
Q Consensus 53 ~~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~~~a~f~A 132 (1267)
..+|.-..+.|+..+|++.++..+..+|+++.+...-+.+..... +. +--...|..+.++. |.+..+-..+|
T Consensus 150 ~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~----~~-~~~~~~l~~~~~~~---~~~~~~~~~la 221 (280)
T PF13429_consen 150 LALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMG----DY-DEAREALKRLLKAA---PDDPDLWDALA 221 (280)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTC----HH-HHHHHHHHHHHHH----HTSCCHCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC----Ch-HHHHHHHHHHHHHC---cCHHHHHHHHH
Confidence 456666778899999999999999888988877766555543222 11 10011244433333 77777777889
Q ss_pred HHHHHHHhhhchhHHHHHHHHHHHhccCCCCCccc
Q 037237 133 ALLYKLAEINDKEWDVVIEACERMLKIGDPYDTLL 167 (1267)
Q Consensus 133 ~lL~~la~~~~~~Y~~a~~ec~RaL~i~~P~dp~~ 167 (1267)
..++.||+ |++|+.--++++.. +|.||.-
T Consensus 222 ~~~~~lg~-----~~~Al~~~~~~~~~-~p~d~~~ 250 (280)
T PF13429_consen 222 AAYLQLGR-----YEEALEYLEKALKL-NPDDPLW 250 (280)
T ss_dssp HHHHHHT------HHHHHHHHHHHHHH-STT-HHH
T ss_pred HHhccccc-----cccccccccccccc-ccccccc
Confidence 99999886 79999999998875 6888766
No 74
>KOG1887 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=85.53 E-value=0.35 Score=61.53 Aligned_cols=117 Identities=20% Similarity=0.029 Sum_probs=83.1
Q ss_pred HhhhhhhccCCCCCCcchHHHHHHHhhCc----HHHHHHHhccCccccCCCCCCcHHHHHHHHHHH-HhcccCCCCcccc
Q 037237 938 EAYLEYWRQFENGTTDSFVNMIVKSLWHL----REFREEFMRRRQTIHNHIGDPCIVCALYDMFAA-LSTACEDNQVEVP 1012 (1267)
Q Consensus 938 ~~~l~~gL~N~~GgNTCFLNSILQcL~H~----p~fRe~fLs~~~~~h~~~~~~CV~CAL~~LFsa-l~~ss~~~~~e~~ 1012 (1267)
+++++.|+.|..|...|++|+..|..|+. ..+....+...+..+...+.+|.+|...+++.. +.... ...+ .
T Consensus 441 s~~~~~~~~~e~g~le~s~~~~~q~e~~k~~~~~~~p~e~~~s~~~e~~~~~~~~~~~saldm~lk~~~n~~--i~~e-~ 517 (806)
T KOG1887|consen 441 SMEPEDGLSNENGNLEISSNTRNQEEATKDPDMKNMPPEDSRSSHTESAIGGAAARYNSALDMTLKALLNIK--VLKE-D 517 (806)
T ss_pred cccccccccCCCcchhhcccccchhhcccCcccccCCCccccccccccccccccceehhHHHHHHHHhhhhh--hhhc-c
Confidence 47788999999999999999999999993 444444444444445555667999988888764 22211 1111 2
Q ss_pred ccc-------hHHHHHHHhcccchHHHhhhhccchHHHHHHHHHHHhhhccC
Q 037237 1013 SAP-------SSLRVALTTYSYDKNICKQAKMNDSSELLQAILESLHESFDT 1057 (1267)
Q Consensus 1013 vsP-------s~Lr~aLs~i~~ds~~F~~g~QqDAhEfL~~LLd~LH~s~~~ 1057 (1267)
+.+ -.+..+|...++.+..+......+++++|..+|..+|+.++.
T Consensus 518 l~~~~q~~~~~~vp~al~~~~~~s~~~~~~~~~~~S~lL~~ll~~l~~~~~~ 569 (806)
T KOG1887|consen 518 LLKNRQPLVALQVPIALQNFFPASVSESIKHEGVYSELLSDLLLSLEEVHNA 569 (806)
T ss_pred cccccchhccccCcchhhhcCCcchHHHHHhhhhHHHHHHHHHhhhHHHhhh
Confidence 222 245567777777666667778889999999999999998764
No 75
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=85.12 E-value=7 Score=42.65 Aligned_cols=108 Identities=17% Similarity=0.169 Sum_probs=68.8
Q ss_pred HHHHHHHhHhhcCCHHHHHHHHHHHHhhCCCCch---hhhhhhHHHHHHH-HHhCCCcchhhhhhhhhhhhhccCCchhh
Q 037237 51 NEGLRALSAFQSGDSKKALEMIKESISSHQDSPH---LHCLEAFIHHSLA-EKAGKGTDTQLEHLTTAASAVGRFPNLVE 126 (1267)
Q Consensus 51 ~e~~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~---~h~~qg~v~~~lA-~~~~~~~~~k~~~l~~~~~Av~l~p~s~~ 126 (1267)
.-...|...++.|++.+|+...++++..+|+++. ++...|.++++.. ....++ .....=+..+.+++..+|++..
T Consensus 72 a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~p~~~~ 150 (235)
T TIGR03302 72 AQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQ-TAAREAFEAFQELIRRYPNSEY 150 (235)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCH-HHHHHHHHHHHHHHHHCCCChh
Confidence 3355677888889999999999999988887776 5777788887652 111111 0000015556778899999864
Q ss_pred hHHHH-----------------HHHHHHHHhhhchhHHHHHHHHHHHhccCCCCCc
Q 037237 127 LSFLH-----------------AALLYKLAEINDKEWDVVIEACERMLKIGDPYDT 165 (1267)
Q Consensus 127 ~a~f~-----------------A~lL~~la~~~~~~Y~~a~~ec~RaL~i~~P~dp 165 (1267)
..... |..++..| .|++|+....+++.. .|.+|
T Consensus 151 ~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g-----~~~~A~~~~~~al~~-~p~~~ 200 (235)
T TIGR03302 151 APDAKKRMDYLRNRLAGKELYVARFYLKRG-----AYVAAINRFETVVEN-YPDTP 200 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHHH-CCCCc
Confidence 32211 22222222 589999999998877 45554
No 76
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=84.64 E-value=0.66 Score=33.66 Aligned_cols=23 Identities=22% Similarity=0.450 Sum_probs=21.1
Q ss_pred eecCccccccCChHHHHHHhHhh
Q 037237 330 SECFVCVEKIGNPQLCEKHFRSS 352 (1267)
Q Consensus 330 W~C~~C~~kF~d~~~~~~H~~~e 352 (1267)
|.|.+|.+.|.+...++.|+...
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~s~ 23 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLRSK 23 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHTTH
T ss_pred CCCCCCCCCcCCHHHHHHHHCcC
Confidence 78999999999999999999753
No 77
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=84.23 E-value=1.4 Score=38.77 Aligned_cols=65 Identities=18% Similarity=0.181 Sum_probs=50.0
Q ss_pred chhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchhhhHHHHHHHHHHHHhhhchhHHHHHHHHHHHhcc
Q 037237 83 PHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLVELSFLHAALLYKLAEINDKEWDVVIEACERMLKI 159 (1267)
Q Consensus 83 ~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~~~a~f~A~lL~~la~~~~~~Y~~a~~ec~RaL~i 159 (1267)
|.++...|.+++..-.- +.. +..+.+|+.+.|+....-.-.|..++.+++ .|++|++.+++||++
T Consensus 3 a~~~~~~g~~~~~~~~~-~~A-------~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~----~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDY-EEA-------IEYFEKAIELDPNNAEAYYNLGLAYMKLGK----DYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHH-HHH-------HHHHHHHHHHSTTHHHHHHHHHHHHHHTTT----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCH-HHH-------HHHHHHHHHcCCCCHHHHHHHHHHHHHhCc----cHHHHHHHHHHHHHc
Confidence 55667777777764311 112 566788999999999988889999888773 389999999999987
No 78
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=84.21 E-value=2 Score=51.86 Aligned_cols=85 Identities=18% Similarity=0.175 Sum_probs=67.5
Q ss_pred HhHhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchhhhHHHHHHHHH
Q 037237 57 LSAFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLVELSFLHAALLY 136 (1267)
Q Consensus 57 ~~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~~~a~f~A~lL~ 136 (1267)
.-.+..++..+|.++|++.+..+|.++.+..+|+..+.+..+- +.. |.-|++||.+.|++.+.=...|..+.
T Consensus 208 ~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~-~lA-------L~iAk~av~lsP~~f~~W~~La~~Yi 279 (395)
T PF09295_consen 208 RVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKY-ELA-------LEIAKKAVELSPSEFETWYQLAECYI 279 (395)
T ss_pred HHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH-HHH-------HHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 3344578899999999999988898888888998888765422 111 66789999999999998888999988
Q ss_pred HHHhhhchhHHHHHHHHH
Q 037237 137 KLAEINDKEWDVVIEACE 154 (1267)
Q Consensus 137 ~la~~~~~~Y~~a~~ec~ 154 (1267)
.+++ |+.|+....
T Consensus 280 ~~~d-----~e~ALlaLN 292 (395)
T PF09295_consen 280 QLGD-----FENALLALN 292 (395)
T ss_pred hcCC-----HHHHHHHHh
Confidence 8775 799886653
No 79
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=83.67 E-value=12 Score=40.85 Aligned_cols=114 Identities=14% Similarity=0.121 Sum_probs=72.5
Q ss_pred CCchhHHHHHHHHHhHhhcCCHHHHHHHHHHHHhhCCCCch---hhhhhhHHHHHHHHHh---C-CCcchhhhhhhhhhh
Q 037237 44 SSDPEINNEGLRALSAFQSGDSKKALEMIKESISSHQDSPH---LHCLEAFIHHSLAEKA---G-KGTDTQLEHLTTAAS 116 (1267)
Q Consensus 44 ~~~~~i~~e~~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~---~h~~qg~v~~~lA~~~---~-~~~~~k~~~l~~~~~ 116 (1267)
+|.-+-.+....|...+..|++..|...+++++..||+++. +++..|..++++.... + |+..++.+ +..++.
T Consensus 37 ~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A-~~~~~~ 115 (203)
T PF13525_consen 37 NSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKA-IEEFEE 115 (203)
T ss_dssp TSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHH-HHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHH-HHHHHH
Confidence 34445566778889999999999999999999999987754 7889999999998775 2 33111222 555677
Q ss_pred hhccCCchhhhHHHHHHHHHHHHhhh-------c------hhHHHHHHHHHHHhcc
Q 037237 117 AVGRFPNLVELSFLHAALLYKLAEIN-------D------KEWDVVIEACERMLKI 159 (1267)
Q Consensus 117 Av~l~p~s~~~a~f~A~lL~~la~~~-------~------~~Y~~a~~ec~RaL~i 159 (1267)
-+..+|+|.-...-..++ ..|.+.| + ..|..|+.-++..+.-
T Consensus 116 li~~yP~S~y~~~A~~~l-~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 116 LIKRYPNSEYAEEAKKRL-AELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHH-TTSTTHHHHHHHH-HHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHH
T ss_pred HHHHCcCchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 889999997443222111 2222222 1 1578888888776655
No 80
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=83.17 E-value=4.6 Score=44.09 Aligned_cols=108 Identities=17% Similarity=0.136 Sum_probs=75.2
Q ss_pred hHHHHHHHHHhHhhcCCHHHHHHHHHHHHhhCCCCc---hhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCch
Q 037237 48 EINNEGLRALSAFQSGDSKKALEMIKESISSHQDSP---HLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNL 124 (1267)
Q Consensus 48 ~i~~e~~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~---~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s 124 (1267)
.+..-...|..++..|+..+|+..+++++..+|+++ .++...|.++++.. +. +.- +..+.+++..+|++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~----~~-~~A---~~~~~~~l~~~p~~ 103 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSG----DY-AEA---IAAADRFIRLHPNH 103 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcC----CH-HHH---HHHHHHHHHHCcCC
Confidence 344557788889999999999999999999999776 46677788777663 21 111 55577799999998
Q ss_pred hhh--H-HHHHHHHHHHHhhh---chhHHHHHHHHHHHhccCCCCC
Q 037237 125 VEL--S-FLHAALLYKLAEIN---DKEWDVVIEACERMLKIGDPYD 164 (1267)
Q Consensus 125 ~~~--a-~f~A~lL~~la~~~---~~~Y~~a~~ec~RaL~i~~P~d 164 (1267)
... + ...+..++.+.... ...|++|++..++++.. .|..
T Consensus 104 ~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~p~~ 148 (235)
T TIGR03302 104 PDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR-YPNS 148 (235)
T ss_pred CchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH-CCCC
Confidence 875 2 24455555431000 12588899999888876 4554
No 81
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=83.15 E-value=2.1 Score=37.52 Aligned_cols=68 Identities=21% Similarity=0.261 Sum_probs=51.7
Q ss_pred HhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchhhhHHHHHHH
Q 037237 59 AFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLVELSFLHAAL 134 (1267)
Q Consensus 59 ~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~~~a~f~A~l 134 (1267)
++..|++.+|+++.+.++..+|+++-+...-|.++++...- +--..+ +.++....|+...+..+.|++
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~-----~~A~~~---l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQY-----DEAEEL---LERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-H-----HHHHHH---HHCCHGGGTTHHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH-----HHHHHH---HHHHHHHCcCHHHHHHHHhcC
Confidence 46789999999999999999999988888888887776522 222223 445888899988887777764
No 82
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=83.11 E-value=2.7 Score=56.37 Aligned_cols=106 Identities=14% Similarity=0.011 Sum_probs=72.5
Q ss_pred HHHHhHhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHH------------HHHHHHHhCCCcchhhhh-----------
Q 037237 54 LRALSAFQSGDSKKALEMIKESISSHQDSPHLHCLEAFI------------HHSLAEKAGKGTDTQLEH----------- 110 (1267)
Q Consensus 54 ~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v------------~~~lA~~~~~~~~~k~~~----------- 110 (1267)
..|..+++.|+...|+...+.++..+|..+.++..-+.. +++.|-.. +| +....+
T Consensus 547 ~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l-~P-~~~a~~~LA~~l~~lG~ 624 (987)
T PRK09782 547 AAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI-AP-SANAYVARATIYRQRHN 624 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh-CC-CHHHHHHHHHHHHHCCC
Confidence 456778999999999999999998887654443321111 12223222 33 222111
Q ss_pred ----hhhhhhhhccCCchhhhHHHHHHHHHHHHhhhchhHHHHHHHHHHHhccCCCCCccc
Q 037237 111 ----LTTAASAVGRFPNLVELSFLHAALLYKLAEINDKEWDVVIEACERMLKIGDPYDTLL 167 (1267)
Q Consensus 111 ----l~~~~~Av~l~p~s~~~a~f~A~lL~~la~~~~~~Y~~a~~ec~RaL~i~~P~dp~~ 167 (1267)
+..+++|+.+.|+....-.-.|..|..+|+ |++|+...++||.+ +|.+|.-
T Consensus 625 ~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~-----~eeAi~~l~~AL~l-~P~~~~a 679 (987)
T PRK09782 625 VPAAVSDLRAALELEPNNSNYQAALGYALWDSGD-----IAQSREMLERAHKG-LPDDPAL 679 (987)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHh-CCCCHHH
Confidence 445788999999999887788888887765 69999999999987 5766543
No 83
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=82.26 E-value=4.3 Score=51.52 Aligned_cols=104 Identities=17% Similarity=0.174 Sum_probs=63.6
Q ss_pred HHhHhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHH------------HHhCCCcchhh--------------h
Q 037237 56 ALSAFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLA------------EKAGKGTDTQL--------------E 109 (1267)
Q Consensus 56 a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA------------~~~~~~~~~k~--------------~ 109 (1267)
|.-..+.|+..+|++.++.++..+|+.+.++...|.++.... -.. +|.+... .
T Consensus 743 ~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~~~~~ 821 (899)
T TIGR02917 743 HRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK-APDNAVVLNNLAWLYLELKDPR 821 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCcHH
Confidence 444455566666666666666666655555555555554221 011 1101100 0
Q ss_pred hhhhhhhhhccCCchhhhHHHHHHHHHHHHhhhchhHHHHHHHHHHHhccCCCCCcc
Q 037237 110 HLTTAASAVGRFPNLVELSFLHAALLYKLAEINDKEWDVVIEACERMLKIGDPYDTL 166 (1267)
Q Consensus 110 ~l~~~~~Av~l~p~s~~~a~f~A~lL~~la~~~~~~Y~~a~~ec~RaL~i~~P~dp~ 166 (1267)
-+.-+.+++.+.|++..+....|.+++.+++ |++|+.-.++++.. +|.||.
T Consensus 822 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~A~~~~~~a~~~-~~~~~~ 872 (899)
T TIGR02917 822 ALEYAEKALKLAPNIPAILDTLGWLLVEKGE-----ADRALPLLRKAVNI-APEAAA 872 (899)
T ss_pred HHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC-----HHHHHHHHHHHHhh-CCCChH
Confidence 1444677888899998888888888888775 79999999999987 355443
No 84
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=81.34 E-value=6.3 Score=43.03 Aligned_cols=95 Identities=15% Similarity=0.083 Sum_probs=73.7
Q ss_pred cCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchhhhHHHHHHHHHHHHhh
Q 037237 62 SGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLVELSFLHAALLYKLAEI 141 (1267)
Q Consensus 62 ~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~~~a~f~A~lL~~la~~ 141 (1267)
.++..+++..++..+..+|+.+-.+..-|.++....+- ++. +.++.+|+.+.|+...+...+|..||..+.+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~-~~A-------~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~ 123 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDY-DNA-------LLAYRQALQLRGENAELYAALATVLYYQAGQ 123 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH-HHH-------HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC
Confidence 46678888899999988999998888888887765422 122 6678899999999999999999977543321
Q ss_pred hchhHHHHHHHHHHHhccCCCCCccc
Q 037237 142 NDKEWDVVIEACERMLKIGDPYDTLL 167 (1267)
Q Consensus 142 ~~~~Y~~a~~ec~RaL~i~~P~dp~~ 167 (1267)
..|+++.+...++|.. +|.++..
T Consensus 124 --~~~~~A~~~l~~al~~-dP~~~~a 146 (198)
T PRK10370 124 --HMTPQTREMIDKALAL-DANEVTA 146 (198)
T ss_pred --CCcHHHHHHHHHHHHh-CCCChhH
Confidence 1379999999999998 5776554
No 85
>PLN02789 farnesyltranstransferase
Probab=81.27 E-value=6.7 Score=46.18 Aligned_cols=107 Identities=15% Similarity=0.127 Sum_probs=81.3
Q ss_pred cCCCc-hhHHHHHHHHHhHhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhcc
Q 037237 42 INSSD-PEINNEGLRALSAFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGR 120 (1267)
Q Consensus 42 ~~~~~-~~i~~e~~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l 120 (1267)
+.-++ ..-.-++-||+ ....+.+.+||....++|..+|...-+....|.++.++....++. |+...++.+.
T Consensus 30 i~y~~~~~~a~~~~ra~-l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~ee-------L~~~~~~i~~ 101 (320)
T PLN02789 30 IAYTPEFREAMDYFRAV-YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEE-------LDFAEDVAED 101 (320)
T ss_pred eeeCHHHHHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHH-------HHHHHHHHHH
Confidence 33443 44455666776 455789999999999999999999999999999998875333333 6667779999
Q ss_pred CCchhhhHHHHHHHHHHHHhhhchhHHHHHHHHHHHhcc
Q 037237 121 FPNLVELSFLHAALLYKLAEINDKEWDVVIEACERMLKI 159 (1267)
Q Consensus 121 ~p~s~~~a~f~A~lL~~la~~~~~~Y~~a~~ec~RaL~i 159 (1267)
.|++..+=+.++.++..++. ..|++.+.-+.++|.+
T Consensus 102 npknyqaW~~R~~~l~~l~~---~~~~~el~~~~kal~~ 137 (320)
T PLN02789 102 NPKNYQIWHHRRWLAEKLGP---DAANKELEFTRKILSL 137 (320)
T ss_pred CCcchHHhHHHHHHHHHcCc---hhhHHHHHHHHHHHHh
Confidence 99999887777777766663 2467788888899887
No 86
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=81.14 E-value=0.74 Score=51.13 Aligned_cols=42 Identities=21% Similarity=0.384 Sum_probs=31.1
Q ss_pred HHHHHHHHh----cCceeeeecCccccccCChHHHHHHhHhhhcccC
Q 037237 315 SEALSFAEE----HKTWKFSECFVCVEKIGNPQLCEKHFRSSHWNHL 357 (1267)
Q Consensus 315 s~al~fak~----~~~WrfW~C~~C~~kF~d~~~~~~H~~~eH~~~l 357 (1267)
+++-.|++. ...|+ |.|+.|+|+|.-.+=-.+||..+|...+
T Consensus 60 ~eve~~v~~~~~e~~~~K-~~C~lc~KlFkg~eFV~KHI~nKH~e~v 105 (214)
T PF04959_consen 60 EEVEKFVQKNTKEEDEDK-WRCPLCGKLFKGPEFVRKHIFNKHPEKV 105 (214)
T ss_dssp HHHGGGEEEEE-SSSSEE-EEE-SSS-EESSHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHcCCE-ECCCCCCcccCChHHHHHHHhhcCHHHH
Confidence 344445443 47888 8999999999999999999999999766
No 87
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=80.87 E-value=4.9 Score=50.96 Aligned_cols=93 Identities=18% Similarity=0.163 Sum_probs=56.5
Q ss_pred HHHHhHhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchhhhHHHHHH
Q 037237 54 LRALSAFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLVELSFLHAA 133 (1267)
Q Consensus 54 ~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~~~a~f~A~ 133 (1267)
..|.-.+..|++.+|+++++.++...|..+.++...|.+++... +. +.- +..+++|....|++.......|.
T Consensus 164 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~-~~A---~~~~~~a~~~~p~~~~~~~~~~~ 235 (899)
T TIGR02917 164 GLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLG----NI-ELA---LAAYRKAIALRPNNPAVLLALAT 235 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcC----CH-HHH---HHHHHHHHhhCCCCHHHHHHHHH
Confidence 33444455566666666666655555555555555555544332 11 000 33456677888888887777777
Q ss_pred HHHHHHhhhchhHHHHHHHHHHHhcc
Q 037237 134 LLYKLAEINDKEWDVVIEACERMLKI 159 (1267)
Q Consensus 134 lL~~la~~~~~~Y~~a~~ec~RaL~i 159 (1267)
+++..++ |++|.....+++..
T Consensus 236 ~~~~~g~-----~~~A~~~~~~~~~~ 256 (899)
T TIGR02917 236 ILIEAGE-----FEEAEKHADALLKK 256 (899)
T ss_pred HHHHcCC-----HHHHHHHHHHHHHh
Confidence 7777654 78888888887776
No 88
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=80.63 E-value=88 Score=37.71 Aligned_cols=101 Identities=16% Similarity=0.205 Sum_probs=64.8
Q ss_pred HHHHHhHhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchhhhHHHH-
Q 037237 53 GLRALSAFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLVELSFLH- 131 (1267)
Q Consensus 53 ~~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~~~a~f~- 131 (1267)
-.+++.++..||+.+|.+.+.... .+.+.|.++.+- -...|....+. +.-..|+.- |++..|+......+.
T Consensus 88 ~~~gl~a~~eGd~~~A~k~l~~~~-~~~~~p~l~~ll---aA~aA~~~g~~-~~A~~~l~~---A~~~~~~~~~~~~l~~ 159 (398)
T PRK10747 88 TEQALLKLAEGDYQQVEKLMTRNA-DHAEQPVVNYLL---AAEAAQQRGDE-ARANQHLER---AAELADNDQLPVEITR 159 (398)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHH-hcccchHHHHHH---HHHHHHHCCCH-HHHHHHHHH---HHhcCCcchHHHHHHH
Confidence 456777788999999998877654 333345555332 12233455565 555566544 889999986444444
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHHHhccCCCCCccc
Q 037237 132 AALLYKLAEINDKEWDVVIEACERMLKIGDPYDTLL 167 (1267)
Q Consensus 132 A~lL~~la~~~~~~Y~~a~~ec~RaL~i~~P~dp~~ 167 (1267)
|.+....+ .|++|.+..++.+... |..|..
T Consensus 160 a~l~l~~g-----~~~~Al~~l~~~~~~~-P~~~~a 189 (398)
T PRK10747 160 VRIQLARN-----ENHAARHGVDKLLEVA-PRHPEV 189 (398)
T ss_pred HHHHHHCC-----CHHHHHHHHHHHHhcC-CCCHHH
Confidence 44444433 4899999999988884 766543
No 89
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=80.60 E-value=2.6 Score=37.43 Aligned_cols=51 Identities=27% Similarity=0.357 Sum_probs=43.8
Q ss_pred hhhhhhhhccCCchhhhHHHHHHHHHHHHhhhchhHHHHHHHHHHHhccCCCCCccc
Q 037237 111 LTTAASAVGRFPNLVELSFLHAALLYKLAEINDKEWDVVIEACERMLKIGDPYDTLL 167 (1267)
Q Consensus 111 l~~~~~Av~l~p~s~~~a~f~A~lL~~la~~~~~~Y~~a~~ec~RaL~i~~P~dp~~ 167 (1267)
+..+.+++.++|+++..-..+|..++.+|+ |++|+....++|.. .|.+|..
T Consensus 15 ~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~-----~~~A~~~l~~~l~~-~p~~~~~ 65 (73)
T PF13371_consen 15 LEVLERALELDPDDPELWLQRARCLFQLGR-----YEEALEDLERALEL-SPDDPDA 65 (73)
T ss_pred HHHHHHHHHhCcccchhhHHHHHHHHHhcc-----HHHHHHHHHHHHHH-CCCcHHH
Confidence 556778999999999999999999999986 79999999999988 4665443
No 90
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=79.15 E-value=16 Score=38.08 Aligned_cols=104 Identities=13% Similarity=0.002 Sum_probs=68.6
Q ss_pred HHHHHHHhHhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHH----------hCC---Ccchhhh--------
Q 037237 51 NEGLRALSAFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEK----------AGK---GTDTQLE-------- 109 (1267)
Q Consensus 51 ~e~~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~----------~~~---~~~~k~~-------- 109 (1267)
.-...|.-++..|++.+|++..+..+..+|..+.++..-|.+++....- ++. +......
T Consensus 67 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 146 (234)
T TIGR02521 67 AYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCAL 146 (234)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHH
Confidence 3345667778899999999999999988887766666666555433210 110 1000000
Q ss_pred ----h---hhhhhhhhccCCchhhhHHHHHHHHHHHHhhhchhHHHHHHHHHHHhcc
Q 037237 110 ----H---LTTAASAVGRFPNLVELSFLHAALLYKLAEINDKEWDVVIEACERMLKI 159 (1267)
Q Consensus 110 ----~---l~~~~~Av~l~p~s~~~a~f~A~lL~~la~~~~~~Y~~a~~ec~RaL~i 159 (1267)
| ...+.+++...|+........|.+++..++ |++|+.-.++++.+
T Consensus 147 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-----~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 147 KAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQ-----YKDARAYLERYQQT 198 (234)
T ss_pred HcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHh
Confidence 1 334566788888887777777777777654 78888888888887
No 91
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=78.87 E-value=12 Score=48.79 Aligned_cols=100 Identities=21% Similarity=0.111 Sum_probs=75.1
Q ss_pred hhHHHHHHHHHhHhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchhh
Q 037237 47 PEINNEGLRALSAFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLVE 126 (1267)
Q Consensus 47 ~~i~~e~~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~~ 126 (1267)
++++.=...|--+|.|||...|.+|..|.|...|.-+.+...=|.||=+++.. .|+ |...--|+.|.|++-+
T Consensus 137 ~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~------eK~--l~~~llAAHL~p~d~e 208 (895)
T KOG2076|consen 137 PELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDI------EKA--LNFWLLAAHLNPKDYE 208 (895)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccH------HHH--HHHHHHHHhcCCCChH
Confidence 55777788899999999999999999999977788888888888888777722 233 3333447899999997
Q ss_pred hHHHHHHHHHHHHhhhchhHHHHHHHHHHHhcc
Q 037237 127 LSFLHAALLYKLAEINDKEWDVVIEACERMLKI 159 (1267)
Q Consensus 127 ~a~f~A~lL~~la~~~~~~Y~~a~~ec~RaL~i 159 (1267)
+=.-+|.+.-+++. |..|.-=.-||++.
T Consensus 209 ~W~~ladls~~~~~-----i~qA~~cy~rAI~~ 236 (895)
T KOG2076|consen 209 LWKRLADLSEQLGN-----INQARYCYSRAIQA 236 (895)
T ss_pred HHHHHHHHHHhccc-----HHHHHHHHHHHHhc
Confidence 66666665555554 56666666777777
No 92
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=78.36 E-value=7.5 Score=46.70 Aligned_cols=88 Identities=13% Similarity=0.168 Sum_probs=55.8
Q ss_pred hHhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchhhhHHHHHHHHHH
Q 037237 58 SAFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLVELSFLHAALLYK 137 (1267)
Q Consensus 58 ~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~~~a~f~A~lL~~ 137 (1267)
..+..|+..+|++.++.+..+||+++.++...|.+++..- +- +--+.|++. ++...|+...+. ..|.++=.
T Consensus 303 ~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~----~~-~~A~~~le~---al~~~P~~~~~~-~La~~~~~ 373 (398)
T PRK10747 303 PRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHG----EW-QEASLAFRA---ALKQRPDAYDYA-WLADALDR 373 (398)
T ss_pred hhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC----CH-HHHHHHHHH---HHhcCCCHHHHH-HHHHHHHH
Confidence 3345577788888888888888888888888777776653 21 223344444 777777775533 56666666
Q ss_pred HHhhhchhHHHHHHHHHHHhcc
Q 037237 138 LAEINDKEWDVVIEACERMLKI 159 (1267)
Q Consensus 138 la~~~~~~Y~~a~~ec~RaL~i 159 (1267)
+|+. +++..--++||..
T Consensus 374 ~g~~-----~~A~~~~~~~l~~ 390 (398)
T PRK10747 374 LHKP-----EEAAAMRRDGLML 390 (398)
T ss_pred cCCH-----HHHHHHHHHHHhh
Confidence 6654 5555555555554
No 93
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=77.99 E-value=3.9 Score=35.71 Aligned_cols=49 Identities=24% Similarity=0.430 Sum_probs=40.5
Q ss_pred hhhhhhhhccCCchhhhHHHHHHHHHHHHhhhchhHHHHHHHHHHHhccCCCCCc
Q 037237 111 LTTAASAVGRFPNLVELSFLHAALLYKLAEINDKEWDVVIEACERMLKIGDPYDT 165 (1267)
Q Consensus 111 l~~~~~Av~l~p~s~~~a~f~A~lL~~la~~~~~~Y~~a~~ec~RaL~i~~P~dp 165 (1267)
+..+++++..+|++...-...|.+++..++ |++|+.-.++++.+ +|.+|
T Consensus 17 ~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~-----~~~A~~~~~~a~~~-~P~~p 65 (65)
T PF13432_consen 17 IAAFEQALKQDPDNPEAWYLLGRILYQQGR-----YDEALAYYERALEL-DPDNP 65 (65)
T ss_dssp HHHHHHHHCCSTTHHHHHHHHHHHHHHTT------HHHHHHHHHHHHHH-STT-H
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHH-CcCCC
Confidence 445677999999999999999999998775 79999999999888 57765
No 94
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=77.91 E-value=49 Score=38.06 Aligned_cols=71 Identities=21% Similarity=0.233 Sum_probs=51.1
Q ss_pred HHHHHhHhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHH-HhCCCcchhhhhhhhhhhhhccCCchhhhHH
Q 037237 53 GLRALSAFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAE-KAGKGTDTQLEHLTTAASAVGRFPNLVELSF 129 (1267)
Q Consensus 53 ~~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~-~~~~~~~~k~~~l~~~~~Av~l~p~s~~~a~ 129 (1267)
=+.+++.++.||+.+|-+..+.+.++||.++.. -|..+-...|- +..+- +.- +..+.|-..++|++..+..
T Consensus 38 Y~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~--~qa~l~l~yA~Yk~~~y-~~A---~~~~drFi~lyP~~~n~dY 109 (254)
T COG4105 38 YNEGLTELQKGNYEEAIKYFEALDSRHPFSPYS--EQAQLDLAYAYYKNGEY-DLA---LAYIDRFIRLYPTHPNADY 109 (254)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc--HHHHHHHHHHHHhcccH-HHH---HHHHHHHHHhCCCCCChhH
Confidence 367889999999999999999999999988776 44444444431 22222 222 4446678999999998775
No 95
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=77.51 E-value=5.3 Score=52.14 Aligned_cols=96 Identities=13% Similarity=0.057 Sum_probs=72.8
Q ss_pred HHHhHhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchhhhHHHHHHH
Q 037237 55 RALSAFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLVELSFLHAAL 134 (1267)
Q Consensus 55 ~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~~~a~f~A~l 134 (1267)
.|.-+...|++.+|+++++.+++..|.++-++...|.++.... +. +.- +..+++++...|+... ....|.+
T Consensus 55 lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g----~~-~eA---~~~l~~~l~~~P~~~~-~~~la~~ 125 (765)
T PRK10049 55 VAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAG----QY-DEA---LVKAKQLVSGAPDKAN-LLALAYV 125 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC----CH-HHH---HHHHHHHHHhCCCCHH-HHHHHHH
Confidence 3556778899999999999999999988888876666654432 22 212 4556779999999999 6677777
Q ss_pred HHHHHhhhchhHHHHHHHHHHHhccCCCCCc
Q 037237 135 LYKLAEINDKEWDVVIEACERMLKIGDPYDT 165 (1267)
Q Consensus 135 L~~la~~~~~~Y~~a~~ec~RaL~i~~P~dp 165 (1267)
+..+++ +++|+...++++.+ .|.++
T Consensus 126 l~~~g~-----~~~Al~~l~~al~~-~P~~~ 150 (765)
T PRK10049 126 YKRAGR-----HWDELRAMTQALPR-APQTQ 150 (765)
T ss_pred HHHCCC-----HHHHHHHHHHHHHh-CCCCH
Confidence 776654 79999999999998 46543
No 96
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=77.27 E-value=9.5 Score=46.81 Aligned_cols=66 Identities=18% Similarity=0.180 Sum_probs=51.5
Q ss_pred hHHHHHHHHHhHhhcCCHHHHHHHHHHHHhhCCCCch---hhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccC
Q 037237 48 EINNEGLRALSAFQSGDSKKALEMIKESISSHQDSPH---LHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRF 121 (1267)
Q Consensus 48 ~i~~e~~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~---~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~ 121 (1267)
....-+..+..++..|++.+|+...+..+...|+.+- +|+-.|..+..+... +.. +..+++|+++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~-dEA-------la~LrrALels 142 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEG-KKA-------ADCLRTALRDY 142 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCH-HHH-------HHHHHHHHHhc
Confidence 3445677899999999999999999999999998874 588888888877533 233 66677788874
No 97
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=77.09 E-value=5.8 Score=51.79 Aligned_cols=101 Identities=17% Similarity=0.058 Sum_probs=76.4
Q ss_pred HHHHHhHhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchhhhHHHHH
Q 037237 53 GLRALSAFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLVELSFLHA 132 (1267)
Q Consensus 53 ~~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~~~a~f~A 132 (1267)
-..|.-....|+..+|++.+++++...|+.+-++...|.+..... ++ +.- +..+++|..+.|++..+-...|
T Consensus 363 ~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g----~~-~~A---~~~l~~al~l~Pd~~~l~~~~a 434 (765)
T PRK10049 363 SLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARG----WP-RAA---ENELKKAEVLEPRNINLEVEQA 434 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC----CH-HHH---HHHHHHHHhhCCCChHHHHHHH
Confidence 456667778899999999999999999988887777777655443 32 111 4456679999999999777777
Q ss_pred HHHHHHHhhhchhHHHHHHHHHHHhccCCCCCccc
Q 037237 133 ALLYKLAEINDKEWDVVIEACERMLKIGDPYDTLL 167 (1267)
Q Consensus 133 ~lL~~la~~~~~~Y~~a~~ec~RaL~i~~P~dp~~ 167 (1267)
..+..++ .|++|++.-++++.. .|.+|..
T Consensus 435 ~~al~~~-----~~~~A~~~~~~ll~~-~Pd~~~~ 463 (765)
T PRK10049 435 WTALDLQ-----EWRQMDVLTDDVVAR-EPQDPGV 463 (765)
T ss_pred HHHHHhC-----CHHHHHHHHHHHHHh-CCCCHHH
Confidence 7655554 489999999999986 5776544
No 98
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=76.67 E-value=1.8 Score=37.66 Aligned_cols=26 Identities=15% Similarity=0.161 Sum_probs=23.4
Q ss_pred ecCccccccCChHHHHHHhHhhhcccC
Q 037237 331 ECFVCVEKIGNPQLCEKHFRSSHWNHL 357 (1267)
Q Consensus 331 ~C~~C~~kF~d~~~~~~H~~~eH~~~l 357 (1267)
.||+|++ ..+..+|..|+.++|...-
T Consensus 4 ~CP~C~~-~~~~~~L~~H~~~~H~~~~ 29 (54)
T PF05605_consen 4 TCPYCGK-GFSESSLVEHCEDEHRSES 29 (54)
T ss_pred CCCCCCC-ccCHHHHHHHHHhHCcCCC
Confidence 5999999 7889999999999999854
No 99
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=75.97 E-value=7.8 Score=50.24 Aligned_cols=95 Identities=12% Similarity=-0.043 Sum_probs=78.6
Q ss_pred HhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchhhhHHHHHHHHHHH
Q 037237 59 AFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLVELSFLHAALLYKL 138 (1267)
Q Consensus 59 ~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~~~a~f~A~lL~~l 138 (1267)
..++|.+..|+...+-++...|+..-++..-+++..++-+- +.. +..++++....|++...-...|+.|-.+
T Consensus 96 ~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~-eeA-------~~~~~~~l~~~p~~~~~~~~~a~~l~~~ 167 (694)
T PRK15179 96 LEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGI-EAG-------RAEIELYFSGGSSSAREILLEAKSWDEI 167 (694)
T ss_pred HHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccH-HHH-------HHHHHHHhhcCCCCHHHHHHHHHHHHHh
Confidence 45679999999999999988898887777777777766433 233 7888999999999999999999999999
Q ss_pred HhhhchhHHHHHHHHHHHhccCCCCCccc
Q 037237 139 AEINDKEWDVVIEACERMLKIGDPYDTLL 167 (1267)
Q Consensus 139 a~~~~~~Y~~a~~ec~RaL~i~~P~dp~~ 167 (1267)
|+ |++|..-=+|+|. .+|.++..
T Consensus 168 g~-----~~~A~~~y~~~~~-~~p~~~~~ 190 (694)
T PRK15179 168 GQ-----SEQADACFERLSR-QHPEFENG 190 (694)
T ss_pred cc-----hHHHHHHHHHHHh-cCCCcHHH
Confidence 97 7999999999998 77765444
No 100
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=75.65 E-value=7 Score=36.12 Aligned_cols=81 Identities=15% Similarity=0.175 Sum_probs=54.5
Q ss_pred cCCHHHHHHHHHHHHhhCCCC--chhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchhhhHHHHHHHHHHHH
Q 037237 62 SGDSKKALEMIKESISSHQDS--PHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLVELSFLHAALLYKLA 139 (1267)
Q Consensus 62 ~Gnh~kAL~~~kd~~~~h~~s--~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~~~a~f~A~lL~~la 139 (1267)
.|++.+|+.+.+.++...|.+ ..+.+.-|.++++...- +.+ +..+++ ....|..+....+.|+.++.|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y-------~~A-~~~~~~-~~~~~~~~~~~~l~a~~~~~l~ 72 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKY-------EEA-IELLQK-LKLDPSNPDIHYLLARCLLKLG 72 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHH-------HHH-HHHHHC-HTHHHCHHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCH-------HHH-HHHHHH-hCCCCCCHHHHHHHHHHHHHhC
Confidence 689999999999999888843 22222246666655421 111 333444 6777888889999999999999
Q ss_pred hhhchhHHHHHHHHHHH
Q 037237 140 EINDKEWDVVIEACERM 156 (1267)
Q Consensus 140 ~~~~~~Y~~a~~ec~Ra 156 (1267)
+ |++|+..=++|
T Consensus 73 ~-----y~eAi~~l~~~ 84 (84)
T PF12895_consen 73 K-----YEEAIKALEKA 84 (84)
T ss_dssp ------HHHHHHHHHHH
T ss_pred C-----HHHHHHHHhcC
Confidence 6 78888765543
No 101
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=74.91 E-value=1.5 Score=32.79 Aligned_cols=22 Identities=18% Similarity=0.363 Sum_probs=20.3
Q ss_pred eecCccccccCChHHHHHHhHh
Q 037237 330 SECFVCVEKIGNPQLCEKHFRS 351 (1267)
Q Consensus 330 W~C~~C~~kF~d~~~~~~H~~~ 351 (1267)
|.|..|++.|.+...+..|+.+
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~s 23 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMKS 23 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTTS
T ss_pred CCcccCCCCcCCHHHHHHHHcc
Confidence 5799999999999999999875
No 102
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=74.51 E-value=13 Score=51.00 Aligned_cols=106 Identities=13% Similarity=0.024 Sum_probs=70.1
Q ss_pred HHHhHhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHH----HH----HhC-----------CCc-----------
Q 037237 55 RALSAFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSL----AE----KAG-----------KGT----------- 104 (1267)
Q Consensus 55 ~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~l----A~----~~~-----------~~~----------- 104 (1267)
.|.-+++.|++.+|++..++++..+|+.+.++.--|.++... |. .+. ...
T Consensus 391 Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~ 470 (1157)
T PRK11447 391 LGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEA 470 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 455567788888888888888877777766665555544210 00 000 000
Q ss_pred -chhhhh---hhhhhhhhccCCchhhhHHHHHHHHHHHHhhhchhHHHHHHHHHHHhccCCCCCcc
Q 037237 105 -DTQLEH---LTTAASAVGRFPNLVELSFLHAALLYKLAEINDKEWDVVIEACERMLKIGDPYDTL 166 (1267)
Q Consensus 105 -~~k~~~---l~~~~~Av~l~p~s~~~a~f~A~lL~~la~~~~~~Y~~a~~ec~RaL~i~~P~dp~ 166 (1267)
...-.| +..+++|+.+.|++..+....|.+++.+++ |++|+...++++.. .|.+|.
T Consensus 471 ~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~-----~~~A~~~l~~al~~-~P~~~~ 530 (1157)
T PRK11447 471 LENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQ-----RSQADALMRRLAQQ-KPNDPE 530 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHc-CCCCHH
Confidence 000111 455788999999999988888888888775 79999999999875 466543
No 103
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=74.39 E-value=7.1 Score=46.46 Aligned_cols=81 Identities=15% Similarity=0.045 Sum_probs=64.4
Q ss_pred HHHHHHhHhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchhhhHHHH
Q 037237 52 EGLRALSAFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLVELSFLH 131 (1267)
Q Consensus 52 e~~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~~~a~f~ 131 (1267)
-..+|.-+++.|++..|+..++.++...|+.+.+|+..|.+++.+..- +.. +..+++|+.+.|+...+....
T Consensus 39 ~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~-~eA-------~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 39 YADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY-QTA-------KAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH-HHH-------HHHHHHHHHhCCCCHHHHHHH
Confidence 367888899999999999999999999999999999999999877422 112 445677999999998877776
Q ss_pred HHHHHHHHh
Q 037237 132 AALLYKLAE 140 (1267)
Q Consensus 132 A~lL~~la~ 140 (1267)
++....|..
T Consensus 111 ~~~~~kl~~ 119 (356)
T PLN03088 111 KECDEKIAE 119 (356)
T ss_pred HHHHHHHHh
Confidence 666555543
No 104
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=73.91 E-value=6.6 Score=41.15 Aligned_cols=69 Identities=22% Similarity=0.199 Sum_probs=56.3
Q ss_pred ccCCCchhHHHHHHHHHhHhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHhCCCcchhhhhhhhh
Q 037237 41 AINSSDPEINNEGLRALSAFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTA 114 (1267)
Q Consensus 41 ~~~~~~~~i~~e~~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~ 114 (1267)
..||.|+.+ ++|.+++..|++.-|+.++.-++.-.|+..-+..+.+.++-+++..++++ ..+--||.+|
T Consensus 66 l~GG~d~vl----~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~~~-~~Rn~yL~~A 134 (141)
T PF14863_consen 66 LAGGADKVL----ERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSENA-NWRNYYLTGA 134 (141)
T ss_dssp HTTCHHHHH----HHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-SSH-HHHHHHHHHH
T ss_pred HcCCHHHHH----HHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhccCH-HHHHHHHHHH
Confidence 355655554 67889999999999999999999999999999999999999999999998 8887788773
No 105
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=73.74 E-value=3.3 Score=30.99 Aligned_cols=29 Identities=28% Similarity=0.313 Sum_probs=25.4
Q ss_pred HHHHhHhhcCCHHHHHHHHHHHHhhCCCC
Q 037237 54 LRALSAFQSGDSKKALEMIKESISSHQDS 82 (1267)
Q Consensus 54 ~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s 82 (1267)
..|.-..+.|++.+|++.+++++.+||+|
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 34666778899999999999999999986
No 106
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=73.60 E-value=17 Score=42.48 Aligned_cols=43 Identities=16% Similarity=0.153 Sum_probs=27.5
Q ss_pred HHHHHhHhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHH
Q 037237 53 GLRALSAFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHS 95 (1267)
Q Consensus 53 ~~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~ 95 (1267)
+..|..+++.|++.+|++..++.+...|..+.++..-|.++.+
T Consensus 184 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 226 (389)
T PRK11788 184 CELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALA 226 (389)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHH
Confidence 4555566667777777777777766666666666665555554
No 107
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=72.63 E-value=2.6 Score=39.63 Aligned_cols=61 Identities=18% Similarity=0.242 Sum_probs=23.1
Q ss_pred ehHHHHHHHHhhccch--HHHH---HHHHHHHHHhcCceeeeecCccccccCChHHHHHHhHhhhcc
Q 037237 294 NKEELKKYVKSLKNDF--VEKI---FSEALSFAEEHKTWKFSECFVCVEKIGNPQLCEKHFRSSHWN 355 (1267)
Q Consensus 294 ~i~eLksy~~~~~~~~--~~~~---Ls~al~fak~~~~WrfW~C~~C~~kF~d~~~~~~H~~~eH~~ 355 (1267)
+.++|..|....++-. ..+. ....+.+.+. .-=.-|.|+.|++.|.+...++.||...|-.
T Consensus 11 ~~~~l~~H~~~~H~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~C~~C~~~f~s~~~l~~Hm~~~~H~ 76 (100)
T PF12756_consen 11 SVDDLLQHMKKKHGFDIPDQKYLVDPNRLLNYLRK-KVKESFRCPYCNKTFRSREALQEHMRSKHHK 76 (100)
T ss_dssp ---------------------------------------SSEEBSSSS-EESSHHHHHHHHHHTTTT
T ss_pred ccccccccccccccccccccccccccccccccccc-ccCCCCCCCccCCCCcCHHHHHHHHcCccCC
Confidence 3566777776655411 1112 2233333321 1111599999999999999999999986433
No 108
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=72.59 E-value=1.9 Score=38.13 Aligned_cols=30 Identities=17% Similarity=0.215 Sum_probs=27.7
Q ss_pred eeeecCccccccCChHHHHHHhHhhhcccC
Q 037237 328 KFSECFVCVEKIGNPQLCEKHFRSSHWNHL 357 (1267)
Q Consensus 328 rfW~C~~C~~kF~d~~~~~~H~~~eH~~~l 357 (1267)
.|.-||+|++.|-+..++..|+-.-|.-.+
T Consensus 16 ~~lrCPRC~~~FR~~K~Y~RHVNKaH~~~~ 45 (65)
T COG4049 16 EFLRCPRCGMVFRRRKDYIRHVNKAHGWLF 45 (65)
T ss_pred eeeeCCchhHHHHHhHHHHHHhhHHhhhhh
Confidence 689999999999999999999999998766
No 109
>smart00355 ZnF_C2H2 zinc finger.
Probab=71.67 E-value=2.9 Score=29.44 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=21.2
Q ss_pred eecCccccccCChHHHHHHhHhhhc
Q 037237 330 SECFVCVEKIGNPQLCEKHFRSSHW 354 (1267)
Q Consensus 330 W~C~~C~~kF~d~~~~~~H~~~eH~ 354 (1267)
+.|+.|++.|.+...+..|+. .|.
T Consensus 1 ~~C~~C~~~f~~~~~l~~H~~-~H~ 24 (26)
T smart00355 1 YRCPECGKVFKSKSALKEHMR-THX 24 (26)
T ss_pred CCCCCCcchhCCHHHHHHHHH-Hhc
Confidence 369999999999999999998 664
No 110
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=71.64 E-value=70 Score=34.87 Aligned_cols=67 Identities=21% Similarity=0.272 Sum_probs=43.4
Q ss_pred HHHHHhHhhcCCHHHHHHHHHHHHhhCCCCchhhhh---hhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchhhh
Q 037237 53 GLRALSAFQSGDSKKALEMIKESISSHQDSPHLHCL---EAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLVEL 127 (1267)
Q Consensus 53 ~~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~---qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~~~ 127 (1267)
=..|+..++.||+.+|.+..++++.++|+|+.+-.. -|..+++. +|- +.- +..+.+-+..+|++...
T Consensus 9 Y~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~----~~y-~~A---~~~~~~fi~~yP~~~~~ 78 (203)
T PF13525_consen 9 YQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQ----GDY-EEA---IAAYERFIKLYPNSPKA 78 (203)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHT----T-H-HHH---HHHHHHHHHH-TT-TTH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHc----CCH-HHH---HHHHHHHHHHCCCCcch
Confidence 467999999999999999999999999988765433 33333332 121 111 44566788899998854
No 111
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=70.97 E-value=17 Score=43.20 Aligned_cols=98 Identities=20% Similarity=0.176 Sum_probs=75.6
Q ss_pred HHHHHHhHhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchhhhHHHH
Q 037237 52 EGLRALSAFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLVELSFLH 131 (1267)
Q Consensus 52 e~~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~~~a~f~ 131 (1267)
=..+++.++.+||+..|.+.|--++...|=.+.+....+..|.+-. +| |.+ +--++-|..|..++-+...=-
T Consensus 158 l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~----e~---k~A-I~Dlk~askLs~DnTe~~yki 229 (504)
T KOG0624|consen 158 LVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEG----EP---KKA-IHDLKQASKLSQDNTEGHYKI 229 (504)
T ss_pred HHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcC----cH---HHH-HHHHHHHHhccccchHHHHHH
Confidence 3678899999999999999999999999877777777777665433 33 222 223445788999999999899
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHHHhccCCCC
Q 037237 132 AALLYKLAEINDKEWDVVIEACERMLKIGDPY 163 (1267)
Q Consensus 132 A~lL~~la~~~~~~Y~~a~~ec~RaL~i~~P~ 163 (1267)
+.|||.+|+. +.++.+-+.+|+. +|.
T Consensus 230 s~L~Y~vgd~-----~~sL~~iRECLKl-dpd 255 (504)
T KOG0624|consen 230 SQLLYTVGDA-----ENSLKEIRECLKL-DPD 255 (504)
T ss_pred HHHHHhhhhH-----HHHHHHHHHHHcc-Ccc
Confidence 9999999987 7777777777887 454
No 112
>PRK11906 transcriptional regulator; Provisional
Probab=70.82 E-value=29 Score=42.85 Aligned_cols=115 Identities=13% Similarity=-0.042 Sum_probs=88.4
Q ss_pred chhHHHHHHHHHhHhhcCC---HHHHHHHHHHHH---hhCCCCchhhhhhhHHHHHHH--HHhCCCcchhhhhhhhhhhh
Q 037237 46 DPEINNEGLRALSAFQSGD---SKKALEMIKESI---SSHQDSPHLHCLEAFIHHSLA--EKAGKGTDTQLEHLTTAASA 117 (1267)
Q Consensus 46 ~~~i~~e~~~a~~~~~~Gn---h~kAL~~~kd~~---~~h~~s~~~h~~qg~v~~~lA--~~~~~~~~~k~~~l~~~~~A 117 (1267)
++-|...+-||+..+.+|+ ...||.+..+.+ .-.|..+.+|+.-+..++..+ ...+.+ .....-+..|++|
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~-~~~~~a~~~A~rA 330 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELE-LAAQKALELLDYV 330 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCch-HHHHHHHHHHHHH
Confidence 5777788999999988886 468999999999 555788999999999888774 233323 4444447789999
Q ss_pred hccCCchhhhHHHHHHHHHHHHhhhchhHHHHHHHHHHHhccCCCCCccc
Q 037237 118 VGRFPNLVELSFLHAALLYKLAEINDKEWDVVIEACERMLKIGDPYDTLL 167 (1267)
Q Consensus 118 v~l~p~s~~~a~f~A~lL~~la~~~~~~Y~~a~~ec~RaL~i~~P~dp~~ 167 (1267)
|++.|++..--...|.++...++ |+.+...-+||+.+ +|+.+..
T Consensus 331 veld~~Da~a~~~~g~~~~~~~~-----~~~a~~~f~rA~~L-~Pn~A~~ 374 (458)
T PRK11906 331 SDITTVDGKILAIMGLITGLSGQ-----AKVSHILFEQAKIH-STDIASL 374 (458)
T ss_pred HhcCCCCHHHHHHHHHHHHhhcc-----hhhHHHHHHHHhhc-CCccHHH
Confidence 99999998766666766666553 79999999999998 6765443
No 113
>PHA00616 hypothetical protein
Probab=70.77 E-value=2.1 Score=36.35 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=22.7
Q ss_pred ecCccccccCChHHHHHHhHhhhcc
Q 037237 331 ECFVCVEKIGNPQLCEKHFRSSHWN 355 (1267)
Q Consensus 331 ~C~~C~~kF~d~~~~~~H~~~eH~~ 355 (1267)
.|+.|++.|....++..|+..-|-.
T Consensus 3 qC~~CG~~F~~~s~l~~H~r~~hg~ 27 (44)
T PHA00616 3 QCLRCGGIFRKKKEVIEHLLSVHKQ 27 (44)
T ss_pred ccchhhHHHhhHHHHHHHHHHhcCC
Confidence 6999999999999999999877765
No 114
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.47 E-value=1.5e+02 Score=35.13 Aligned_cols=55 Identities=15% Similarity=0.073 Sum_probs=37.3
Q ss_pred HHHHhHhhcCCHHHHHHHHHHHHhhC----C--C------CchhhhhhhHHHHHHHHHhCCCcchhhh
Q 037237 54 LRALSAFQSGDSKKALEMIKESISSH----Q--D------SPHLHCLEAFIHHSLAEKAGKGTDTQLE 109 (1267)
Q Consensus 54 ~~a~~~~~~Gnh~kAL~~~kd~~~~h----~--~------s~~~h~~qg~v~~~lA~~~~~~~~~k~~ 109 (1267)
.-||..|++|++.-||+.|-|.|.|- | + -+-+..++-++-......++.- ++|++
T Consensus 183 niALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAf-NLKaA 249 (459)
T KOG4340|consen 183 NLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAF-NLKAA 249 (459)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHh-hhhhh
Confidence 45888999999999999999998764 3 1 1346666666666555555443 44443
No 115
>PF13945 NST1: Salt tolerance down-regulator
Probab=70.02 E-value=2.6 Score=46.14 Aligned_cols=33 Identities=33% Similarity=0.663 Sum_probs=27.5
Q ss_pred hhhHHHHHHHhhhccCCChhhhccceeeehHHHH
Q 037237 266 QNVEKVEKYVSFWSSGLNSDKKRGFLKVNKEELK 299 (1267)
Q Consensus 266 ~~~~~~~~~r~yW~~~ls~e~kr~FL~V~i~eLk 299 (1267)
+..+....++.||.| |+.++||++++|.-+.+-
T Consensus 99 Ss~eEre~LkeFW~S-L~eeERr~LVkIEKe~VL 131 (190)
T PF13945_consen 99 SSQEEREKLKEFWES-LSEEERRSLVKIEKEAVL 131 (190)
T ss_pred hhHHHHHHHHHHHHc-cCHHHHHHHHHhhHHHHH
Confidence 444567789999999 999999999999876554
No 116
>PRK14574 hmsH outer membrane protein; Provisional
Probab=69.94 E-value=20 Score=47.56 Aligned_cols=103 Identities=16% Similarity=0.146 Sum_probs=71.6
Q ss_pred hHHHHHHHHHhHhhcCCHHHHHHHHHHHHhhCCCCc-hhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchhh
Q 037237 48 EINNEGLRALSAFQSGDSKKALEMIKESISSHQDSP-HLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLVE 126 (1267)
Q Consensus 48 ~i~~e~~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~-~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~~ 126 (1267)
.+...=++|+-.+|.||+..|+..+++.....|+++ .++ -...++....+. +.-..| +.+|+ .|+...
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-----dll~l~~~~G~~-~~A~~~---~eka~--~p~n~~ 101 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-----DWLQIAGWAGRD-QEVIDV---YERYQ--SSMNIS 101 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-----HHHHHHHHcCCc-HHHHHH---HHHhc--cCCCCC
Confidence 455788999999999999999999999999999774 555 333444444444 333444 45577 555554
Q ss_pred hHHHH--HHHHHHHHhhhchhHHHHHHHHHHHhccCCCCCccc
Q 037237 127 LSFLH--AALLYKLAEINDKEWDVVIEACERMLKIGDPYDTLL 167 (1267)
Q Consensus 127 ~a~f~--A~lL~~la~~~~~~Y~~a~~ec~RaL~i~~P~dp~~ 167 (1267)
.-.+. |+++...+ .|++|+.-.+++|.. +|.+|..
T Consensus 102 ~~~llalA~ly~~~g-----dyd~Aiely~kaL~~-dP~n~~~ 138 (822)
T PRK14574 102 SRGLASAARAYRNEK-----RWDQALALWQSSLKK-DPTNPDL 138 (822)
T ss_pred HHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhh-CCCCHHH
Confidence 44444 55555444 489999999999988 5776544
No 117
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=69.25 E-value=28 Score=36.38 Aligned_cols=108 Identities=18% Similarity=0.076 Sum_probs=67.9
Q ss_pred CCCchhHHHHHHHHHhHhhcCCHHHHHHHHHHHHhhCCCCc---hhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhc
Q 037237 43 NSSDPEINNEGLRALSAFQSGDSKKALEMIKESISSHQDSP---HLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVG 119 (1267)
Q Consensus 43 ~~~~~~i~~e~~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~---~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~ 119 (1267)
.+.+.....-...|..++..|++.+|+..++..+..++++. .+|.--|.++.... +. +-- +..+.+|..
T Consensus 29 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g----~~-~eA---~~~~~~Al~ 100 (168)
T CHL00033 29 TSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNG----EH-TKA---LEYYFQALE 100 (168)
T ss_pred CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcC----CH-HHH---HHHHHHHHH
Confidence 34445566667888899999999999999999987765532 34444444444432 22 111 344566888
Q ss_pred cCCchhhhHHHHHHHHHHHHhhh--chhHHHHHHHHHHHhc
Q 037237 120 RFPNLVELSFLHAALLYKLAEIN--DKEWDVVIEACERMLK 158 (1267)
Q Consensus 120 l~p~s~~~a~f~A~lL~~la~~~--~~~Y~~a~~ec~RaL~ 158 (1267)
+.|.........|.+++.+|... ...|++++.-+++|+.
T Consensus 101 ~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~ 141 (168)
T CHL00033 101 RNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAE 141 (168)
T ss_pred hCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHH
Confidence 89988877777788887665311 0135555555554443
No 118
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=68.92 E-value=11 Score=37.15 Aligned_cols=83 Identities=16% Similarity=0.059 Sum_probs=62.2
Q ss_pred HHHHHHhhCCCCchhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchhhhHHHHHHHHHHHHhhhchhHHHHH
Q 037237 71 MIKESISSHQDSPHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLVELSFLHAALLYKLAEINDKEWDVVI 150 (1267)
Q Consensus 71 ~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~~~a~f~A~lL~~la~~~~~~Y~~a~ 150 (1267)
.++.+++.+|+.+.++...|..+++...- +.. +..+.+++.+.|+....-...|.+++.+++ |++|+
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~-~~A-------~~~~~~~~~~~p~~~~~~~~la~~~~~~~~-----~~~A~ 71 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRY-DEA-------LKLFQLLAAYDPYNSRYWLGLAACCQMLKE-----YEEAI 71 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccH-HHH-------HHHHHHHHHhCCCcHHHHHHHHHHHHHHHH-----HHHHH
Confidence 46677778888888888888888766421 112 333566888999999888888999888875 79999
Q ss_pred HHHHHHhccCCCCCccc
Q 037237 151 EACERMLKIGDPYDTLL 167 (1267)
Q Consensus 151 ~ec~RaL~i~~P~dp~~ 167 (1267)
...++++.+ +|.+|..
T Consensus 72 ~~~~~~~~~-~p~~~~~ 87 (135)
T TIGR02552 72 DAYALAAAL-DPDDPRP 87 (135)
T ss_pred HHHHHHHhc-CCCChHH
Confidence 999999988 4655444
No 119
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=68.76 E-value=17 Score=38.19 Aligned_cols=75 Identities=16% Similarity=0.173 Sum_probs=53.7
Q ss_pred HHHHHHHHhHhhcCCHHHHHHHHHHHHhhCCCC---chhhhhhhHHHHHHHH-------HhC-CCcchhhhhhhhhhhhh
Q 037237 50 NNEGLRALSAFQSGDSKKALEMIKESISSHQDS---PHLHCLEAFIHHSLAE-------KAG-KGTDTQLEHLTTAASAV 118 (1267)
Q Consensus 50 ~~e~~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s---~~~h~~qg~v~~~lA~-------~~~-~~~~~k~~~l~~~~~Av 118 (1267)
.++.+-+-..|.+|++.+|+..++++|.-||.+ +-+.+..|-.++++.. ..+ |+..++.. +....+-|
T Consensus 48 qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A-~~~f~~lv 126 (142)
T PF13512_consen 48 QAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQA-FRDFEQLV 126 (142)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHH-HHHHHHHH
Confidence 567788888999999999999999999888655 5566778888888764 221 33122222 45566688
Q ss_pred ccCCchh
Q 037237 119 GRFPNLV 125 (1267)
Q Consensus 119 ~l~p~s~ 125 (1267)
..+|+|.
T Consensus 127 ~~yP~S~ 133 (142)
T PF13512_consen 127 RRYPNSE 133 (142)
T ss_pred HHCcCCh
Confidence 8888885
No 120
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=67.77 E-value=32 Score=41.50 Aligned_cols=101 Identities=12% Similarity=0.018 Sum_probs=71.0
Q ss_pred hHHHHHHHHHhHhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchh--
Q 037237 48 EINNEGLRALSAFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLV-- 125 (1267)
Q Consensus 48 ~i~~e~~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~-- 125 (1267)
..+....-|.-....|++.+|++++++...++|++...-. ..+..+...+ + +-....+..+.++....|++.
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~----~~l~~~~~l~-~-~~~~~~~~~~e~~lk~~p~~~~~ 335 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISL----PLCLPIPRLK-P-EDNEKLEKLIEKQAKNVDDKPKC 335 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchh----HHHHHhhhcC-C-CChHHHHHHHHHHHHhCCCChhH
Confidence 3444555666788999999999999999999987754321 1223333332 2 222345777788999999999
Q ss_pred hhHHHHHHHHHHHHhhhchhHHHHHHHHHHHhcc
Q 037237 126 ELSFLHAALLYKLAEINDKEWDVVIEACERMLKI 159 (1267)
Q Consensus 126 ~~a~f~A~lL~~la~~~~~~Y~~a~~ec~RaL~i 159 (1267)
.+-..++.++|..++ |++|...=++|...
T Consensus 336 ~ll~sLg~l~~~~~~-----~~~A~~~le~a~a~ 364 (409)
T TIGR00540 336 CINRALGQLLMKHGE-----FIEAADAFKNVAAC 364 (409)
T ss_pred HHHHHHHHHHHHccc-----HHHHHHHHHHhHHh
Confidence 888889999988765 78888888753333
No 121
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=67.66 E-value=25 Score=43.88 Aligned_cols=93 Identities=26% Similarity=0.337 Sum_probs=72.4
Q ss_pred HHHHhHhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchhhhHHHHHH
Q 037237 54 LRALSAFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLVELSFLHAA 133 (1267)
Q Consensus 54 ~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~~~a~f~A~ 133 (1267)
++.-.+|..||+.+|.+..-+.|.+.|+.+.++.=.|.-|.+|..-- ..|..+..+.+|.|+-+.--.==|.
T Consensus 363 ~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~--------~aL~Da~~~ieL~p~~~kgy~RKg~ 434 (539)
T KOG0548|consen 363 EKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYP--------EALKDAKKCIELDPNFIKAYLRKGA 434 (539)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHH--------HHHHHHHHHHhcCchHHHHHHHHHH
Confidence 34678999999999999999999999999999999999999887331 1155577799998887643222244
Q ss_pred HHHHHHhhhchhHHHHHHHHHHHhcc
Q 037237 134 LLYKLAEINDKEWDVVIEACERMLKI 159 (1267)
Q Consensus 134 lL~~la~~~~~~Y~~a~~ec~RaL~i 159 (1267)
.|+.+ +.|.+|+.-+..||..
T Consensus 435 al~~m-----k~ydkAleay~eale~ 455 (539)
T KOG0548|consen 435 ALRAM-----KEYDKALEAYQEALEL 455 (539)
T ss_pred HHHHH-----HHHHHHHHHHHHHHhc
Confidence 44443 4699999999999988
No 122
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=67.11 E-value=14 Score=38.21 Aligned_cols=81 Identities=7% Similarity=-0.061 Sum_probs=66.3
Q ss_pred HHHHHHHhHhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchhhhHHH
Q 037237 51 NEGLRALSAFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLVELSFL 130 (1267)
Q Consensus 51 ~e~~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~~~a~f 130 (1267)
.-...|.-+.+.|++.+|+...+..+...|+.+.+|+--|.++..+.+-. .. +..+++|+.+.|+.......
T Consensus 60 a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~-eA-------i~~~~~Al~~~p~~~~~~~~ 131 (144)
T PRK15359 60 AHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPG-LA-------REAFQTAIKMSYADASWSEI 131 (144)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHH-HH-------HHHHHHHHHhCCCChHHHHH
Confidence 34667777889999999999999999999999999999999998875332 22 55677799999999998887
Q ss_pred HHHHHHHHH
Q 037237 131 HAALLYKLA 139 (1267)
Q Consensus 131 ~A~lL~~la 139 (1267)
.+..+..+.
T Consensus 132 ~~~~~~~l~ 140 (144)
T PRK15359 132 RQNAQIMVD 140 (144)
T ss_pred HHHHHHHHH
Confidence 777766654
No 123
>PRK11906 transcriptional regulator; Provisional
Probab=66.95 E-value=14 Score=45.46 Aligned_cols=85 Identities=12% Similarity=0.096 Sum_probs=71.0
Q ss_pred cCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchhhhHHHHHHHHHHHHhh
Q 037237 62 SGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLVELSFLHAALLYKLAEI 141 (1267)
Q Consensus 62 ~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~~~a~f~A~lL~~la~~ 141 (1267)
..+-.+|++..+..+..-++.|++|..-|++..-.+. .+.. +....+|..|.||+.....++|-+++..|+
T Consensus 317 ~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~-~~~a-------~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~- 387 (458)
T PRK11906 317 ELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQ-AKVS-------HILFEQAKIHSTDIASLYYYRALVHFHNEK- 387 (458)
T ss_pred hHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcc-hhhH-------HHHHHHHhhcCCccHHHHHHHHHHHHHcCC-
Confidence 4567888999999888889999999999998776665 3333 455678999999999999999999888886
Q ss_pred hchhHHHHHHHHHHHhcc
Q 037237 142 NDKEWDVVIEACERMLKI 159 (1267)
Q Consensus 142 ~~~~Y~~a~~ec~RaL~i 159 (1267)
.+++++..+|||..
T Consensus 388 ----~~~a~~~i~~alrL 401 (458)
T PRK11906 388 ----IEEARICIDKSLQL 401 (458)
T ss_pred ----HHHHHHHHHHHhcc
Confidence 59999999999988
No 124
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=66.84 E-value=24 Score=41.22 Aligned_cols=97 Identities=20% Similarity=0.253 Sum_probs=74.2
Q ss_pred hhHHHHHHHHHhHhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchhh
Q 037237 47 PEINNEGLRALSAFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLVE 126 (1267)
Q Consensus 47 ~~i~~e~~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~~ 126 (1267)
..||.|..++ ...++|.+|+..-.+.|.-.|..|..|+-.+.++.+|..- ++. +..+.+|+...|.+-+
T Consensus 82 E~LK~eGN~~---m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~-~~A-------VkDce~Al~iDp~ysk 150 (304)
T KOG0553|consen 82 ESLKNEGNKL---MKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEY-EDA-------VKDCESALSIDPHYSK 150 (304)
T ss_pred HHHHHHHHHH---HHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcch-HHH-------HHHHHHHHhcChHHHH
Confidence 5677777765 4589999999999999988899999999999999999743 233 5667778999888766
Q ss_pred hHHHHHHHHHHHHhhhchhHHHHHHHHHHHhcc
Q 037237 127 LSFLHAALLYKLAEINDKEWDVVIEACERMLKI 159 (1267)
Q Consensus 127 ~a~f~A~lL~~la~~~~~~Y~~a~~ec~RaL~i 159 (1267)
.-.-.-..++.+|+ |++|++.=++||.+
T Consensus 151 ay~RLG~A~~~~gk-----~~~A~~aykKaLel 178 (304)
T KOG0553|consen 151 AYGRLGLAYLALGK-----YEEAIEAYKKALEL 178 (304)
T ss_pred HHHHHHHHHHccCc-----HHHHHHHHHhhhcc
Confidence 55544555555554 67777777777777
No 125
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=65.86 E-value=3.7 Score=30.31 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=19.7
Q ss_pred ecCccccccCChHHHHHHhHhh
Q 037237 331 ECFVCVEKIGNPQLCEKHFRSS 352 (1267)
Q Consensus 331 ~C~~C~~kF~d~~~~~~H~~~e 352 (1267)
.|..|++.|.+...+..|+..-
T Consensus 3 ~C~~C~~~F~~~~~l~~H~~~h 24 (27)
T PF13912_consen 3 ECDECGKTFSSLSALREHKRSH 24 (27)
T ss_dssp EETTTTEEESSHHHHHHHHCTT
T ss_pred CCCccCCccCChhHHHHHhHHh
Confidence 5999999999999999999543
No 126
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=64.41 E-value=33 Score=39.38 Aligned_cols=92 Identities=9% Similarity=-0.004 Sum_probs=76.2
Q ss_pred HHHhHhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchhhhHHHHHHH
Q 037237 55 RALSAFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLVELSFLHAAL 134 (1267)
Q Consensus 55 ~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~~~a~f~A~l 134 (1267)
.....|+.||+-.|+..+.++..-.|+.|-+|..-|.++.++.+.- ..+++| +.|.+|+|+...+..=.+++
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~----~Ar~ay----~qAl~L~~~~p~~~nNlgms 177 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFD----EARRAY----RQALELAPNEPSIANNLGMS 177 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChh----HHHHHH----HHHHHhccCCchhhhhHHHH
Confidence 7888999999999999999999888999999999999998887553 334455 66899999999999999999
Q ss_pred HHHHHhhhchhHHHHHHHHHHHhcc
Q 037237 135 LYKLAEINDKEWDVVIEACERMLKI 159 (1267)
Q Consensus 135 L~~la~~~~~~Y~~a~~ec~RaL~i 159 (1267)
++.=| .|+.|+..-.+|..-
T Consensus 178 ~~L~g-----d~~~A~~lll~a~l~ 197 (257)
T COG5010 178 LLLRG-----DLEDAETLLLPAYLS 197 (257)
T ss_pred HHHcC-----CHHHHHHHHHHHHhC
Confidence 77744 378888877776543
No 127
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=63.08 E-value=69 Score=33.84 Aligned_cols=67 Identities=10% Similarity=0.070 Sum_probs=48.7
Q ss_pred HHHHhHhhcCCHHHHHHHHHHHHhhCCCCch---hhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchhhhH
Q 037237 54 LRALSAFQSGDSKKALEMIKESISSHQDSPH---LHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLVELS 128 (1267)
Q Consensus 54 ~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~---~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~~~a 128 (1267)
..|..++++||+.+|.+.++++-.|||.++. +..--|+.+++...-. .. +.++.|-+.|.|++..+-
T Consensus 15 ~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~-~A-------~a~~~rFirLhP~hp~vd 84 (142)
T PF13512_consen 15 QEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYE-EA-------IAAYDRFIRLHPTHPNVD 84 (142)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHH-HH-------HHHHHHHHHhCCCCCCcc
Confidence 4567778899999999999999999986554 4444455555443111 11 667888999999999754
No 128
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=62.55 E-value=5 Score=29.92 Aligned_cols=19 Identities=42% Similarity=0.759 Sum_probs=16.6
Q ss_pred ecCccccccCChHHHHHHhH
Q 037237 331 ECFVCVEKIGNPQLCEKHFR 350 (1267)
Q Consensus 331 ~C~~C~~kF~d~~~~~~H~~ 350 (1267)
.||.|+++| .++.+..|+.
T Consensus 4 ~C~~CgR~F-~~~~l~~H~~ 22 (25)
T PF13913_consen 4 PCPICGRKF-NPDRLEKHEK 22 (25)
T ss_pred cCCCCCCEE-CHHHHHHHHH
Confidence 599999999 8888999864
No 129
>PRK14574 hmsH outer membrane protein; Provisional
Probab=62.49 E-value=53 Score=43.70 Aligned_cols=94 Identities=17% Similarity=0.257 Sum_probs=58.5
Q ss_pred hHhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchhhhHHHHHHHHHH
Q 037237 58 SAFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLVELSFLHAALLYK 137 (1267)
Q Consensus 58 ~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~~~a~f~A~lL~~ 137 (1267)
.+...|++.+|+++.+.++...|+.+-++...+..+.++ ..+ ...+..+.+++..+|+.... .+.+ |.
T Consensus 111 ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~----~q~----~eAl~~l~~l~~~dp~~~~~-l~la---yL 178 (822)
T PRK14574 111 AYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADA----GRG----GVVLKQATELAERDPTVQNY-MTLS---YL 178 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhc----CCH----HHHHHHHHHhcccCcchHHH-HHHH---HH
Confidence 344569999999999999999998877775322222222 222 12366677788899983322 2222 22
Q ss_pred HHhhhchhHHHHHHHHHHHhccCCCCCcc
Q 037237 138 LAEINDKEWDVVIEACERMLKIGDPYDTL 166 (1267)
Q Consensus 138 la~~~~~~Y~~a~~ec~RaL~i~~P~dp~ 166 (1267)
+ ...++.++ ++...++++.. +|.++.
T Consensus 179 ~-~~~~~~~~-AL~~~ekll~~-~P~n~e 204 (822)
T PRK14574 179 N-RATDRNYD-ALQASSEAVRL-APTSEE 204 (822)
T ss_pred H-HhcchHHH-HHHHHHHHHHh-CCCCHH
Confidence 2 11134444 99999999988 476543
No 130
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=62.47 E-value=64 Score=36.53 Aligned_cols=84 Identities=12% Similarity=0.093 Sum_probs=59.5
Q ss_pred cCCCchhHHHHHHHHHhHhhcCCHHHHHHHHHHHHhhCCCC---chhhhhhhHHHHHHHHH-------hCCC-cchhhhh
Q 037237 42 INSSDPEINNEGLRALSAFQSGDSKKALEMIKESISSHQDS---PHLHCLEAFIHHSLAEK-------AGKG-TDTQLEH 110 (1267)
Q Consensus 42 ~~~~~~~i~~e~~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s---~~~h~~qg~v~~~lA~~-------~~~~-~~~k~~~ 110 (1267)
-.++..+..+...-|...++.|++..|+...++++..||++ +-+++..|..++.+... ++.+ .|.....
T Consensus 62 yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~ 141 (243)
T PRK10866 62 YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHAR 141 (243)
T ss_pred CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHH
Confidence 34455667778888999999999999999999999999755 55667777666555422 1111 0222222
Q ss_pred --hhhhhhhhccCCchh
Q 037237 111 --LTTAASAVGRFPNLV 125 (1267)
Q Consensus 111 --l~~~~~Av~l~p~s~ 125 (1267)
+..+++-+..||+|-
T Consensus 142 ~A~~~~~~li~~yP~S~ 158 (243)
T PRK10866 142 AAFRDFSKLVRGYPNSQ 158 (243)
T ss_pred HHHHHHHHHHHHCcCCh
Confidence 567788999999996
No 131
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=62.23 E-value=3.2 Score=49.11 Aligned_cols=89 Identities=16% Similarity=0.196 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHH-HHHHhhhhcccccccc-hhhHHHHHHHhhhccCCChhhhccceeeehHHHHHHHHhhc-----cchH
Q 037237 238 VEMRKKQVEEII-KDLEQQKTYYSTEKYE-QNVEKVEKYVSFWSSGLNSDKKRGFLKVNKEELKKYVKSLK-----NDFV 310 (1267)
Q Consensus 238 ~e~r~~eie~~~-~rll~~~~~~~~~k~~-~~~~~~~~~r~yW~~~ls~e~kr~FL~V~i~eLksy~~~~~-----~~~~ 310 (1267)
.+.|++.-||+- .+-.-++++.+..+.+ +....-.-+.+||.+ |..|.-...++-.|...-+-|-... ..++
T Consensus 44 eerr~~L~eW~~sKGk~~KRPp~~~~~~~~~~~~~e~~~~sFw~t-m~eEde~~~~t~kvn~tlsECl~Li~eGcp~eei 122 (353)
T PF15297_consen 44 EERRARLEEWRASKGKVYKRPPMSVKTPSEPEGQKEKPVGSFWTT-MAEEDEQRLFTEKVNKTLSECLNLIEEGCPKEEI 122 (353)
T ss_pred HHHHHHHHHHHHhCCCccCCCCcccccccCccccccCCccccccc-hhhhhhHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 344566677777 3222233332211110 111123467799999 9988777767666666666554432 2578
Q ss_pred HHHHH-------HHHHHHHhcCceeeeecC
Q 037237 311 EKIFS-------EALSFAEEHKTWKFSECF 333 (1267)
Q Consensus 311 ~~~Ls-------~al~fak~~~~WrfW~C~ 333 (1267)
..+|+ +|--||| ||+|.
T Consensus 123 ~~~L~~li~~IP~A~K~aK------YWIC~ 146 (353)
T PF15297_consen 123 LATLSDLIKNIPDAKKLAK------YWICL 146 (353)
T ss_pred HHHHHHHHhcCchHHHHHH------HHHHH
Confidence 88899 7777887 99994
No 132
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=61.79 E-value=11 Score=31.00 Aligned_cols=37 Identities=16% Similarity=0.188 Sum_probs=31.4
Q ss_pred HHHHhHhhcCCHHHHHHHHHHHHhhCCCCchhhhhhh
Q 037237 54 LRALSAFQSGDSKKALEMIKESISSHQDSPHLHCLEA 90 (1267)
Q Consensus 54 ~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg 90 (1267)
.-|....+.|++.+|.++.+++++.+|+++-++..-|
T Consensus 6 ~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 6 ALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 3466778899999999999999999999888776544
No 133
>PHA02768 hypothetical protein; Provisional
Probab=61.75 E-value=5.7 Score=35.35 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=21.5
Q ss_pred ecCccccccCChHHHHHHhHhhhc
Q 037237 331 ECFVCVEKIGNPQLCEKHFRSSHW 354 (1267)
Q Consensus 331 ~C~~C~~kF~d~~~~~~H~~~eH~ 354 (1267)
.|+.|++.|+....+..|+.. |.
T Consensus 7 ~C~~CGK~Fs~~~~L~~H~r~-H~ 29 (55)
T PHA02768 7 ECPICGEIYIKRKSMITHLRK-HN 29 (55)
T ss_pred CcchhCCeeccHHHHHHHHHh-cC
Confidence 799999999999999999996 66
No 134
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=61.25 E-value=11 Score=43.93 Aligned_cols=62 Identities=24% Similarity=0.291 Sum_probs=51.2
Q ss_pred HHHHHHHHhCCCcchhh----hh---hhhhhhhhccCCchhhhHHHHHHHHHHHHhhhchhHHHHHHHHHHHhcc
Q 037237 92 IHHSLAEKAGKGTDTQL----EH---LTTAASAVGRFPNLVELSFLHAALLYKLAEINDKEWDVVIEACERMLKI 159 (1267)
Q Consensus 92 v~~~lA~~~~~~~~~k~----~~---l~~~~~Av~l~p~s~~~a~f~A~lL~~la~~~~~~Y~~a~~ec~RaL~i 159 (1267)
....+|+.+.+- --|+ .| |+-+..|..|.|++.++.+=+|..+..|++ |+.||+-|+.||.|
T Consensus 76 e~~~~AE~LK~e-GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~-----~~~AVkDce~Al~i 144 (304)
T KOG0553|consen 76 EDKALAESLKNE-GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGE-----YEDAVKDCESALSI 144 (304)
T ss_pred hHHHHHHHHHHH-HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcc-----hHHHHHHHHHHHhc
Confidence 566777766543 1121 35 777889999999999999999999999997 89999999999999
No 135
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.00 E-value=23 Score=42.02 Aligned_cols=98 Identities=14% Similarity=0.090 Sum_probs=56.3
Q ss_pred HHhHhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhcc-CCchhh---hHHHH
Q 037237 56 ALSAFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGR-FPNLVE---LSFLH 131 (1267)
Q Consensus 56 a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l-~p~s~~---~a~f~ 131 (1267)
|--.+.||+|.+|-..-+.+...||..-++--..-+.|+-....+.. ..+.++-.-- .|+-+- +.-.|
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~--------k~ai~kIip~wn~dlp~~sYv~Gmy 181 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGK--------KNAIEKIIPKWNADLPCYSYVHGMY 181 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhh--------hhHHHHhccccCCCCcHHHHHHHHH
Confidence 44567899999999888888888975433222211222222211111 0111111111 222222 22267
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHHHhccCCCCCccc
Q 037237 132 AALLYKLAEINDKEWDVVIEACERMLKIGDPYDTLL 167 (1267)
Q Consensus 132 A~lL~~la~~~~~~Y~~a~~ec~RaL~i~~P~dp~~ 167 (1267)
|-.|.++| .|++|.+.|+|||+| ||+|-..
T Consensus 182 aFgL~E~g-----~y~dAEk~A~ralqi-N~~D~Wa 211 (491)
T KOG2610|consen 182 AFGLEECG-----IYDDAEKQADRALQI-NRFDCWA 211 (491)
T ss_pred HhhHHHhc-----cchhHHHHHHhhccC-CCcchHH
Confidence 77788877 499999999999999 7887554
No 136
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=60.40 E-value=26 Score=40.89 Aligned_cols=98 Identities=21% Similarity=0.114 Sum_probs=57.2
Q ss_pred HHHHHHHHHhHhhcCCHHHHHHHHHHHHhhCCCCch-----hhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCc
Q 037237 49 INNEGLRALSAFQSGDSKKALEMIKESISSHQDSPH-----LHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPN 123 (1267)
Q Consensus 49 i~~e~~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~-----~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~ 123 (1267)
...-...|.-+...|++.+|++.++.++..+|..+. .+...|.++.+. .+. +.-..+ +.++....|+
T Consensus 141 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~----~~~-~~A~~~---~~~al~~~p~ 212 (389)
T PRK11788 141 EGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALAR----GDL-DAARAL---LKKALAADPQ 212 (389)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhC----CCH-HHHHHH---HHHHHhHCcC
Confidence 445566777788899999999999999988765432 333444444432 222 111122 3345556666
Q ss_pred hhhhHHHHHHHHHHHHhhhchhHHHHHHHHHHHhcc
Q 037237 124 LVELSFLHAALLYKLAEINDKEWDVVIEACERMLKI 159 (1267)
Q Consensus 124 s~~~a~f~A~lL~~la~~~~~~Y~~a~~ec~RaL~i 159 (1267)
........|.++...++ |++|+...++++..
T Consensus 213 ~~~~~~~la~~~~~~g~-----~~~A~~~~~~~~~~ 243 (389)
T PRK11788 213 CVRASILLGDLALAQGD-----YAAAIEALERVEEQ 243 (389)
T ss_pred CHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHH
Confidence 66555555555555443 45555555555544
No 137
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=60.21 E-value=12 Score=42.29 Aligned_cols=51 Identities=29% Similarity=0.288 Sum_probs=30.4
Q ss_pred hhhhhhhhccCCchhhhHHHHHHHHHHHHhhhchhHHHHHHHHHHHhccCCCCCccc
Q 037237 111 LTTAASAVGRFPNLVELSFLHAALLYKLAEINDKEWDVVIEACERMLKIGDPYDTLL 167 (1267)
Q Consensus 111 l~~~~~Av~l~p~s~~~a~f~A~lL~~la~~~~~~Y~~a~~ec~RaL~i~~P~dp~~ 167 (1267)
+..+++|+.++|++..+-.-++.+|+..++ |+++..-.++..... |.||.-
T Consensus 166 ~~~~~~al~~~P~~~~~~~~l~~~li~~~~-----~~~~~~~l~~~~~~~-~~~~~~ 216 (280)
T PF13429_consen 166 LRDYRKALELDPDDPDARNALAWLLIDMGD-----YDEAREALKRLLKAA-PDDPDL 216 (280)
T ss_dssp HHHHHHHHHH-TT-HHHHHHHHHHHCTTCH-----HHHHHHHHHHHHHH--HTSCCH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCC-----hHHHHHHHHHHHHHC-cCHHHH
Confidence 556788999999998887777777776664 454333333333332 666554
No 138
>PLN02789 farnesyltranstransferase
Probab=60.04 E-value=30 Score=40.89 Aligned_cols=90 Identities=13% Similarity=0.217 Sum_probs=69.7
Q ss_pred C-CHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchhhhHHHHHHHHHHHHhh
Q 037237 63 G-DSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLVELSFLHAALLYKLAEI 141 (1267)
Q Consensus 63 G-nh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~~~a~f~A~lL~~la~~ 141 (1267)
| +..+||..+..++..+|.+..+..-.|-++.++.... .+ .=++-..+|.+..|+....-...+-++..++.
T Consensus 85 ~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~-----~~-~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~- 157 (320)
T PLN02789 85 DADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDA-----AN-KELEFTRKILSLDAKNYHAWSHRQWVLRTLGG- 157 (320)
T ss_pred chhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchh-----hH-HHHHHHHHHHHhCcccHHHHHHHHHHHHHhhh-
Confidence 5 6799999999999999999888888888876664311 01 11555667999999998877777878777764
Q ss_pred hchhHHHHHHHHHHHhccCCCCC
Q 037237 142 NDKEWDVVIEACERMLKIGDPYD 164 (1267)
Q Consensus 142 ~~~~Y~~a~~ec~RaL~i~~P~d 164 (1267)
|++++.-|.++|.+ +|.+
T Consensus 158 ----~~eeL~~~~~~I~~-d~~N 175 (320)
T PLN02789 158 ----WEDELEYCHQLLEE-DVRN 175 (320)
T ss_pred ----HHHHHHHHHHHHHH-CCCc
Confidence 89999999999998 4544
No 139
>PF14353 CpXC: CpXC protein
Probab=59.87 E-value=5 Score=40.72 Aligned_cols=48 Identities=19% Similarity=0.410 Sum_probs=26.9
Q ss_pred EEecCCCCCcccccccccceeeccchhccccccCCCCCcHHHHHHHhcc-CCcccCCcCCCccc
Q 037237 1092 KVNCVKCSAKFGYRKYTSLFLTLNAYNLRNMKKTPRGSSFDVLLKQLVL-NGLLNCGACGQINY 1154 (1267)
Q Consensus 1092 qV~C~~Cg~~S~t~pf~~l~l~I~as~l~~~k~~~~~~SF~~lLk~~~~-~~~~~C~~Cgk~~~ 1154 (1267)
+++|+.||+.....-+ ..|+++.- ..+.+-+ ++. =+.+.|+.||....
T Consensus 1 ~itCP~C~~~~~~~v~----~~I~~~~~---------p~l~e~i--l~g~l~~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 1 EITCPHCGHEFEFEVW----TSINADED---------PELKEKI--LDGSLFSFTCPSCGHKFR 49 (128)
T ss_pred CcCCCCCCCeeEEEEE----eEEcCcCC---------HHHHHHH--HcCCcCEEECCCCCCcee
Confidence 4799999999876322 22333210 1121111 122 24689999998755
No 140
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=58.43 E-value=23 Score=48.50 Aligned_cols=42 Identities=10% Similarity=-0.017 Sum_probs=27.3
Q ss_pred hhhhhccCCchhhhHHHHHHHHHHHHhhhchhHHHHHHHHHHHhccC
Q 037237 114 AASAVGRFPNLVELSFLHAALLYKLAEINDKEWDVVIEACERMLKIG 160 (1267)
Q Consensus 114 ~~~Av~l~p~s~~~a~f~A~lL~~la~~~~~~Y~~a~~ec~RaL~i~ 160 (1267)
++++....|+++..-...|.+++.+++ |++|++..++++...
T Consensus 660 l~~ll~~~p~~~~~~~~la~~~~~~g~-----~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 660 LAKLPATANDSLNTQRRVALAWAALGD-----TAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHhccCCCChHHHHHHHHHHHhCCC-----HHHHHHHHHHHhhhC
Confidence 445666777777665556666665543 677777777777653
No 141
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=57.76 E-value=11 Score=32.99 Aligned_cols=48 Identities=31% Similarity=0.378 Sum_probs=39.4
Q ss_pred hhhhhhhhccCCchhhhHHHHHHHHHHHHhhhchhHHHHHHHHHHHhccCCCCC
Q 037237 111 LTTAASAVGRFPNLVELSFLHAALLYKLAEINDKEWDVVIEACERMLKIGDPYD 164 (1267)
Q Consensus 111 l~~~~~Av~l~p~s~~~a~f~A~lL~~la~~~~~~Y~~a~~ec~RaL~i~~P~d 164 (1267)
+.-+.+++..+|++..+-..+|..++..|+ |++|...+++++.. +|.+
T Consensus 11 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-----~~~A~~~l~~~~~~-~~~~ 58 (68)
T PF14559_consen 11 IELLEKALQRNPDNPEARLLLAQCYLKQGQ-----YDEAEELLERLLKQ-DPDN 58 (68)
T ss_dssp HHHHHHHHHHTTTSHHHHHHHHHHHHHTT------HHHHHHHHHCCHGG-GTTH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHH-CcCH
Confidence 444667999999999999999999999886 79999999888776 3443
No 142
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=56.94 E-value=57 Score=41.11 Aligned_cols=103 Identities=17% Similarity=0.145 Sum_probs=62.8
Q ss_pred HHHHHHhHhhcCC---HHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHhCCCcchhhhh-hhhhhhhhcc--CCchh
Q 037237 52 EGLRALSAFQSGD---SKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEKAGKGTDTQLEH-LTTAASAVGR--FPNLV 125 (1267)
Q Consensus 52 e~~~a~~~~~~Gn---h~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~-l~~~~~Av~l--~p~s~ 125 (1267)
-+-||..++.+++ +.+|+.++++.++..|+.+.+|-.-+.++.....-...+ ..+..- ...+.+|..+ .|...
T Consensus 342 ~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~-~~~l~~a~~~~~~a~al~~~~~~~ 420 (517)
T PRK10153 342 LFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLD-EKQLAALSTELDNIVALPELNVLP 420 (517)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHHhhhcccCcCCh
Confidence 3456666666655 889999999999999999888887666654433221111 111111 3344455554 44443
Q ss_pred hhHHHHHHHHHHHHhhhchhHHHHHHHHHHHhccC
Q 037237 126 ELSFLHAALLYKLAEINDKEWDVVIEACERMLKIG 160 (1267)
Q Consensus 126 ~~a~f~A~lL~~la~~~~~~Y~~a~~ec~RaL~i~ 160 (1267)
. ...|..+..+. ...|++|+++.+||+...
T Consensus 421 ~--~~~ala~~~~~---~g~~~~A~~~l~rAl~L~ 450 (517)
T PRK10153 421 R--IYEILAVQALV---KGKTDEAYQAINKAIDLE 450 (517)
T ss_pred H--HHHHHHHHHHh---cCCHHHHHHHHHHHHHcC
Confidence 2 23344444433 236899999999999984
No 143
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=55.66 E-value=84 Score=32.07 Aligned_cols=91 Identities=22% Similarity=0.272 Sum_probs=61.3
Q ss_pred HHHhHhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHH---hCCCcchhhhhhhhhhhhhccCCc---hhhhH
Q 037237 55 RALSAFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEK---AGKGTDTQLEHLTTAASAVGRFPN---LVELS 128 (1267)
Q Consensus 55 ~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~---~~~~~~~k~~~l~~~~~Av~l~p~---s~~~a 128 (1267)
+|-....-|++.+|..+-+..++.-...+ ++..+.| .+|.. +..+ +-- +..++.++..+|+ +..+.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~--~~~~a~i--~lastlr~LG~~-deA---~~~L~~~~~~~p~~~~~~~l~ 78 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGA--DRRRALI--QLASTLRNLGRY-DEA---LALLEEALEEFPDDELNAALR 78 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCch--HHHHHHH--HHHHHHHHcCCH-HHH---HHHHHHHHHHCCCccccHHHH
Confidence 34444456999999999999986432222 3333433 34322 2232 222 3334558889999 88999
Q ss_pred HHHHHHHHHHHhhhchhHHHHHHHHHHHhc
Q 037237 129 FLHAALLYKLAEINDKEWDVVIEACERMLK 158 (1267)
Q Consensus 129 ~f~A~lL~~la~~~~~~Y~~a~~ec~RaL~ 158 (1267)
.|+|..|+.+|. +++++...-++|.
T Consensus 79 ~f~Al~L~~~gr-----~~eAl~~~l~~la 103 (120)
T PF12688_consen 79 VFLALALYNLGR-----PKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHCCC-----HHHHHHHHHHHHH
Confidence 999999999997 5999999977775
No 144
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=54.24 E-value=55 Score=38.29 Aligned_cols=100 Identities=14% Similarity=0.060 Sum_probs=74.2
Q ss_pred hHhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchhhhHHHHHHHHHH
Q 037237 58 SAFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLVELSFLHAALLYK 137 (1267)
Q Consensus 58 ~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~~~a~f~A~lL~~ 137 (1267)
-+++.|+..-|+.--...+..-|+.+-+.-.=|.+++-.|....++ .. =+.++.|+.+.|..+.--.++|...|+
T Consensus 165 ~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta-~a----~~ll~~al~~D~~~iral~lLA~~afe 239 (287)
T COG4235 165 AYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTA-KA----RALLRQALALDPANIRALSLLAFAAFE 239 (287)
T ss_pred HHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccH-HH----HHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 3455666666665555555444667777777777777777554443 22 233677999999999999999999999
Q ss_pred HHhhhchhHHHHHHHHHHHhccCCCCCccc
Q 037237 138 LAEINDKEWDVVIEACERMLKIGDPYDTLL 167 (1267)
Q Consensus 138 la~~~~~~Y~~a~~ec~RaL~i~~P~dp~~ 167 (1267)
-|+ |++|+.-=+..|+...|.||..
T Consensus 240 ~g~-----~~~A~~~Wq~lL~~lp~~~~rr 264 (287)
T COG4235 240 QGD-----YAEAAAAWQMLLDLLPADDPRR 264 (287)
T ss_pred ccc-----HHHHHHHHHHHHhcCCCCCchH
Confidence 775 8999999999999988888877
No 145
>PRK11189 lipoprotein NlpI; Provisional
Probab=53.00 E-value=51 Score=38.03 Aligned_cols=97 Identities=13% Similarity=-0.053 Sum_probs=68.1
Q ss_pred HHHHHHhHhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchhhhHHHH
Q 037237 52 EGLRALSAFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLVELSFLH 131 (1267)
Q Consensus 52 e~~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~~~a~f~ 131 (1267)
-..++.-....|++..|+...+..+...|+.+.++...|.+++...+- +.. +..+++|..+.|++... .++
T Consensus 101 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~-~eA-------~~~~~~al~~~P~~~~~-~~~ 171 (296)
T PRK11189 101 YNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRY-ELA-------QDDLLAFYQDDPNDPYR-ALW 171 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH-HHH-------HHHHHHHHHhCCCCHHH-HHH
Confidence 345667778899999999999999988899999999999998865422 111 55567799999998731 122
Q ss_pred HHHHHHHHhhhchhHHHHHHHHHHHhccCCC
Q 037237 132 AALLYKLAEINDKEWDVVIEACERMLKIGDP 162 (1267)
Q Consensus 132 A~lL~~la~~~~~~Y~~a~~ec~RaL~i~~P 162 (1267)
. + ++.. ...+++|+....+++...+|
T Consensus 172 ~---~-l~~~-~~~~~~A~~~l~~~~~~~~~ 197 (296)
T PRK11189 172 L---Y-LAES-KLDPKQAKENLKQRYEKLDK 197 (296)
T ss_pred H---H-HHHc-cCCHHHHHHHHHHHHhhCCc
Confidence 1 1 2221 23588998888777755444
No 146
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=52.57 E-value=55 Score=42.56 Aligned_cols=77 Identities=16% Similarity=0.047 Sum_probs=58.1
Q ss_pred CchhhhhhhHHHHHHHHHhCCCcchhhhh----hhhhhhhhccCCchhhhHHHHHHHHHHHHhhhchhHHHHHHHHHHHh
Q 037237 82 SPHLHCLEAFIHHSLAEKAGKGTDTQLEH----LTTAASAVGRFPNLVELSFLHAALLYKLAEINDKEWDVVIEACERML 157 (1267)
Q Consensus 82 s~~~h~~qg~v~~~lA~~~~~~~~~k~~~----l~~~~~Av~l~p~s~~~a~f~A~lL~~la~~~~~~Y~~a~~ec~RaL 157 (1267)
-+..|++.|--+=.+|+..-.+ +-+-++ |+++.+|++..|++. .+-||+.+-|.+-.+ -+.|+.-|+|+|
T Consensus 432 ~~~~~l~lGi~y~~~A~~a~~~-seR~~~h~kslqale~av~~d~~dp-~~if~lalq~A~~R~----l~sAl~~~~eaL 505 (799)
T KOG4162|consen 432 KPRGYLFLGIAYGFQARQANLK-SERDALHKKSLQALEEAVQFDPTDP-LVIFYLALQYAEQRQ----LTSALDYAREAL 505 (799)
T ss_pred hhhHHHHHHHHHHhHhhcCCCh-HHHHHHHHHHHHHHHHHHhcCCCCc-hHHHHHHHHHHHHHh----HHHHHHHHHHHH
Confidence 3677788887776777765554 445454 999999999999999 677787777766544 788999999999
Q ss_pred ccCCCCC
Q 037237 158 KIGDPYD 164 (1267)
Q Consensus 158 ~i~~P~d 164 (1267)
++..-++
T Consensus 506 ~l~~~~~ 512 (799)
T KOG4162|consen 506 ALNRGDS 512 (799)
T ss_pred HhcCCcc
Confidence 9954333
No 147
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=52.40 E-value=11 Score=33.17 Aligned_cols=26 Identities=19% Similarity=0.505 Sum_probs=20.8
Q ss_pred eecCccccccCChHHHHHHhHhhhcc
Q 037237 330 SECFVCVEKIGNPQLCEKHFRSSHWN 355 (1267)
Q Consensus 330 W~C~~C~~kF~d~~~~~~H~~~eH~~ 355 (1267)
=.||.|+..+..+..++.|++--|..
T Consensus 25 atCP~C~a~~~~srnLrRHle~~H~~ 50 (54)
T PF09237_consen 25 ATCPICGAVIRQSRNLRRHLEIRHFK 50 (54)
T ss_dssp EE-TTT--EESSHHHHHHHHHHHTTT
T ss_pred CCCCcchhhccchhhHHHHHHHHhcc
Confidence 46999999999999999999998864
No 148
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=52.20 E-value=7.5 Score=33.86 Aligned_cols=42 Identities=14% Similarity=0.280 Sum_probs=29.8
Q ss_pred eehHHHHHHHHhhccchHHHHHHHHHHHHHhcCceeeeecCccccccCChHHHHHHhHhhh
Q 037237 293 VNKEELKKYVKSLKNDFVEKIFSEALSFAEEHKTWKFSECFVCVEKIGNPQLCEKHFRSSH 353 (1267)
Q Consensus 293 V~i~eLksy~~~~~~~~~~~~Ls~al~fak~~~~WrfW~C~~C~~kF~d~~~~~~H~~~eH 353 (1267)
.+...|..|+...+..... --+||+|+.++.+ .+..||...|
T Consensus 12 ~~~~~L~~H~~~~H~~~~~-----------------~v~CPiC~~~~~~--~l~~Hl~~~H 53 (54)
T PF05605_consen 12 FSESSLVEHCEDEHRSESK-----------------NVVCPICSSRVTD--NLIRHLNSQH 53 (54)
T ss_pred cCHHHHHHHHHhHCcCCCC-----------------CccCCCchhhhhh--HHHHHHHHhc
Confidence 4556777787776532211 2489999988764 9999999877
No 149
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.44 E-value=95 Score=35.97 Aligned_cols=84 Identities=17% Similarity=0.125 Sum_probs=62.1
Q ss_pred HHHHHHHHhHhhcCCHHHHHHHHHHHHhhCCCC---chhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchhh
Q 037237 50 NNEGLRALSAFQSGDSKKALEMIKESISSHQDS---PHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLVE 126 (1267)
Q Consensus 50 ~~e~~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s---~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~~ 126 (1267)
..+=+.|++++.+|++..|..-..+.+.++|+| +-+|+-=|..+|.+..- . ++...|+ +++.-+|.+..
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y---~-~Aa~~f~----~~~k~~P~s~K 213 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDY---E-DAAYIFA----RVVKDYPKSPK 213 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccc---h-HHHHHHH----HHHHhCCCCCC
Confidence 348899999999999999999999999999875 77899999999988632 2 3444443 34556777765
Q ss_pred hH---HHHHHHHHHHHhh
Q 037237 127 LS---FLHAALLYKLAEI 141 (1267)
Q Consensus 127 ~a---~f~A~lL~~la~~ 141 (1267)
.. .=.|..+..|+++
T Consensus 214 ApdallKlg~~~~~l~~~ 231 (262)
T COG1729 214 APDALLKLGVSLGRLGNT 231 (262)
T ss_pred ChHHHHHHHHHHHHhcCH
Confidence 42 3456666666654
No 150
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=50.99 E-value=37 Score=43.24 Aligned_cols=99 Identities=16% Similarity=0.096 Sum_probs=77.1
Q ss_pred cCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHH------------HhCCC-----------cchhhh-h---hhhh
Q 037237 62 SGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAE------------KAGKG-----------TDTQLE-H---LTTA 114 (1267)
Q Consensus 62 ~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~------------~~~~~-----------~~~k~~-~---l~~~ 114 (1267)
+++|..|++.++..+...|+-+-+|.++|+=+...-+ +. || .-+|+. | .--.
T Consensus 434 Qkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~-~~rhYnAwYGlG~vy~Kqek~e~Ae~~f 512 (638)
T KOG1126|consen 434 QKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV-DPRHYNAWYGLGTVYLKQEKLEFAEFHF 512 (638)
T ss_pred hhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC-CchhhHHHHhhhhheeccchhhHHHHHH
Confidence 7899999999999999999999999999997764421 11 11 001111 1 1127
Q ss_pred hhhhccCCchhhhHHHHHHHHHHHHhhhchhHHHHHHHHHHHhccCCCCCccc
Q 037237 115 ASAVGRFPNLVELSFLHAALLYKLAEINDKEWDVVIEACERMLKIGDPYDTLL 167 (1267)
Q Consensus 115 ~~Av~l~p~s~~~a~f~A~lL~~la~~~~~~Y~~a~~ec~RaL~i~~P~dp~~ 167 (1267)
++|++..|.+.++-.-+-+.+..++. +++|+.--++|+-+ +|.||..
T Consensus 513 qkA~~INP~nsvi~~~~g~~~~~~k~-----~d~AL~~~~~A~~l-d~kn~l~ 559 (638)
T KOG1126|consen 513 QKAVEINPSNSVILCHIGRIQHQLKR-----KDKALQLYEKAIHL-DPKNPLC 559 (638)
T ss_pred HhhhcCCccchhHHhhhhHHHHHhhh-----hhHHHHHHHHHHhc-CCCCchh
Confidence 89999999999999999999888875 69999999999988 6888876
No 151
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=49.54 E-value=49 Score=38.19 Aligned_cols=98 Identities=11% Similarity=0.103 Sum_probs=67.5
Q ss_pred HHHHHHHHHhHhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchhhh-
Q 037237 49 INNEGLRALSAFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLVEL- 127 (1267)
Q Consensus 49 i~~e~~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~~~- 127 (1267)
.-.-+-.|.-....|++..|++..+..+...|..+.+|..-|.+++...+- +.. ..+ +.++....|.....
T Consensus 114 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~-~eA----~~~---l~~~l~~~~~~~~~~ 185 (355)
T cd05804 114 WYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRF-KEG----IAF---MESWRDTWDCSSMLR 185 (355)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCH-HHH----HHH---HHhhhhccCCCcchh
Confidence 344556777888999999999999999999998888888889999876533 111 233 44467777654322
Q ss_pred HH---HHHHHHHHHHhhhchhHHHHHHHHHHHhcc
Q 037237 128 SF---LHAALLYKLAEINDKEWDVVIEACERMLKI 159 (1267)
Q Consensus 128 a~---f~A~lL~~la~~~~~~Y~~a~~ec~RaL~i 159 (1267)
.+ ..|..+...|+ |++|+..-++++..
T Consensus 186 ~~~~~~la~~~~~~G~-----~~~A~~~~~~~~~~ 215 (355)
T cd05804 186 GHNWWHLALFYLERGD-----YEAALAIYDTHIAP 215 (355)
T ss_pred HHHHHHHHHHHHHCCC-----HHHHHHHHHHHhcc
Confidence 12 34555555554 78888888887654
No 152
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=47.10 E-value=70 Score=42.63 Aligned_cols=109 Identities=17% Similarity=0.087 Sum_probs=81.0
Q ss_pred hHHHHHHHHHhHhhcCCHHHHHHHHHHHHhhCCCC-chhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchhh
Q 037237 48 EINNEGLRALSAFQSGDSKKALEMIKESISSHQDS-PHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLVE 126 (1267)
Q Consensus 48 ~i~~e~~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s-~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~~ 126 (1267)
-|=.=.-||-=+|.+|||.-||.+-+.++-.+|.+ |-+...-|+-|.++.... .. +.|..||.+|.|.++.
T Consensus 163 Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~-~a-------~~a~~ralqLdp~~v~ 234 (1018)
T KOG2002|consen 163 NILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSE-KA-------LLAFERALQLDPTCVS 234 (1018)
T ss_pred chHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchh-hH-------HHHHHHHHhcChhhHH
Confidence 34445678899999999999999999988788743 555566677787775432 22 6677899999997765
Q ss_pred hHHHHHHHHHHHHhhhchhHHHHHHHHHHHhccCCCCCccc
Q 037237 127 LSFLHAALLYKLAEINDKEWDVVIEACERMLKIGDPYDTLL 167 (1267)
Q Consensus 127 ~a~f~A~lL~~la~~~~~~Y~~a~~ec~RaL~i~~P~dp~~ 167 (1267)
. +.|-..+.+.......|++++.--.||.++ +|.+|..
T Consensus 235 a--lv~L~~~~l~~~d~~s~~~~~~ll~~ay~~-n~~nP~~ 272 (1018)
T KOG2002|consen 235 A--LVALGEVDLNFNDSDSYKKGVQLLQRAYKE-NNENPVA 272 (1018)
T ss_pred H--HHHHHHHHHHccchHHHHHHHHHHHHHHhh-cCCCcHH
Confidence 4 444455555554345899999999999998 6777766
No 153
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=45.92 E-value=24 Score=43.45 Aligned_cols=96 Identities=24% Similarity=0.204 Sum_probs=72.2
Q ss_pred hhhhccC-CCCCCCCCCCCCCCCCCccccCccccccccCCCchhHHHHHHHHHhHhhcCCHHHHHHHHHHHHhhCCCCch
Q 037237 6 NQEMGKK-KHPVKKPTATPPPPDSTIVESGSKQSTLAINSSDPEINNEGLRALSAFQSGDSKKALEMIKESISSHQDSPH 84 (1267)
Q Consensus 6 ~~~mg~k-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~ 84 (1267)
|.-||+= -+|+- -.|-||.+.++. -|.+-+|.|.. .+.|.++|.+|++.=|-++++.+++-.|+...
T Consensus 420 ~rYlG~yD~NPa~--L~P~~p~d~a~r------yV~amGGadrV----l~la~ea~~kGdyrW~a~lln~~VfAdp~n~~ 487 (655)
T COG2015 420 NRYLGYYDGNPAN--LHPLPPVDSAKR------YVEAMGGADRV----LELAREAFDKGDYRWAAELLNQAVFADPGNKA 487 (655)
T ss_pred HHHhccccCCccc--cCCCChhHhHHH------HHHHhccHHHH----HHHHHHHHhcccchHHHHHHhhHHhcCCccHH
Confidence 5678887 55552 223333333311 12244555544 56899999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHhCCCcchhhhhhhhh
Q 037237 85 LHCLEAFIHHSLAEKAGKGTDTQLEHLTTA 114 (1267)
Q Consensus 85 ~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~ 114 (1267)
+..+|+..+=+|+-.+|+. .-+-.||.+|
T Consensus 488 Ar~L~Ad~lEQLgYqaE~A-~wRn~yLtgA 516 (655)
T COG2015 488 ARELQADALEQLGYQAESA-TWRNFYLTGA 516 (655)
T ss_pred HHHHHHhHHHHhhhhhccc-hhhhhHHHhH
Confidence 9999999999999999998 7777888873
No 154
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=45.26 E-value=7.2 Score=36.66 Aligned_cols=26 Identities=19% Similarity=0.425 Sum_probs=0.0
Q ss_pred cCccccccCChHHHHHHhHhhhcccC
Q 037237 332 CFVCVEKIGNPQLCEKHFRSSHWNHL 357 (1267)
Q Consensus 332 C~~C~~kF~d~~~~~~H~~~eH~~~l 357 (1267)
|..|+..|.+...++.||...|.-.+
T Consensus 2 C~~C~~~f~~~~~l~~H~~~~H~~~~ 27 (100)
T PF12756_consen 2 CLFCDESFSSVDDLLQHMKKKHGFDI 27 (100)
T ss_dssp --------------------------
T ss_pred cccccccccccccccccccccccccc
Confidence 99999999999999999999997766
No 155
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=44.51 E-value=48 Score=29.22 Aligned_cols=44 Identities=16% Similarity=0.304 Sum_probs=36.0
Q ss_pred HHHhHhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHH
Q 037237 55 RALSAFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAE 98 (1267)
Q Consensus 55 ~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~ 98 (1267)
-|+..++-||+.+|++.++.+....|+...+..++..|--+.++
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~k 50 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQK 50 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhc
Confidence 47888999999999999999999999988888888877766553
No 156
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=44.28 E-value=97 Score=33.30 Aligned_cols=93 Identities=10% Similarity=-0.020 Sum_probs=67.9
Q ss_pred HHHHHhHhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchhhhHHHHH
Q 037237 53 GLRALSAFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLVELSFLHA 132 (1267)
Q Consensus 53 ~~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~~~a~f~A 132 (1267)
=.-|...++.|+...|.++-+=+|..-|..+.-+.-=|-++-.+.. .+.. ++++.+|..+.|++++.....|
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~-~~~A-------I~aY~~A~~L~~ddp~~~~~ag 110 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKH-WGEA-------IYAYGRAAQIKIDAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhh-HHHH-------HHHHHHHHhcCCCCchHHHHHH
Confidence 3567788999999999999999986666655544444444333321 1122 8899999999999999888888
Q ss_pred HHHHHHHhhhc--hhHHHHHHHH
Q 037237 133 ALLYKLAEIND--KEWDVVIEAC 153 (1267)
Q Consensus 133 ~lL~~la~~~~--~~Y~~a~~ec 153 (1267)
..++.+|+.-. +.++.|+..|
T Consensus 111 ~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHh
Confidence 88888887531 2777777777
No 157
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=43.97 E-value=17 Score=28.68 Aligned_cols=32 Identities=22% Similarity=0.162 Sum_probs=27.3
Q ss_pred hhhhhccCCchhhhHHHHHHHHHHHHhhhchhHHHHH
Q 037237 114 AASAVGRFPNLVELSFLHAALLYKLAEINDKEWDVVI 150 (1267)
Q Consensus 114 ~~~Av~l~p~s~~~a~f~A~lL~~la~~~~~~Y~~a~ 150 (1267)
.++|+++.|+....-.-+|.+|...|+ |++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~-----~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGD-----YEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcC-----HHhhc
Confidence 578999999999999999999998876 56654
No 158
>PF12355 Dscam_C: Down syndrome cell adhesion molecule C terminal ; InterPro: IPR021012 This entry is specific to the insecta, predominantly Drosophila spp. This entry is found in association with PF00047 from PFAM, PF07679 from PFAM and PF00041 from PFAM. The Down syndrome cell adhesion molecule (Dscam) belongs to a family of cell membrane molecules involved in the differentiation of the nervous system. This is the C-terminal cytoplasmic tail region of Dscam. In Drosophila melanogaster (Fruit fly) the gene has at least 59 different transcripts. Dscam may play a role in the nervous and immune systems [].
Probab=43.97 E-value=19 Score=35.98 Aligned_cols=46 Identities=24% Similarity=0.312 Sum_probs=25.5
Q ss_pred hccCCCCCCCCCCCCCCCCCCccccCccccccccCCCchhHHHHHHHH
Q 037237 9 MGKKKHPVKKPTATPPPPDSTIVESGSKQSTLAINSSDPEINNEGLRA 56 (1267)
Q Consensus 9 mg~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~~a 56 (1267)
||--|.++..+..|||||+-+- +.+.+|--++..|...-.+||+|-
T Consensus 52 ~gs~~~~~~gSPePPpPPPRn~--D~~nsSfNDSk~SnEiSEAECDrd 97 (124)
T PF12355_consen 52 VGSARNPGNGSPEPPPPPPRNH--DVSNSSFNDSKDSNEISEAECDRD 97 (124)
T ss_pred cccccCCCCCCCCCCCcCCCCC--CCCCcccccccccchhhhhhcccc
Confidence 3333666666666666666442 222233334444446777899874
No 159
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=43.53 E-value=70 Score=32.70 Aligned_cols=90 Identities=20% Similarity=0.155 Sum_probs=55.7
Q ss_pred HHHHHhHhhcCCHHHHHHHHHHHHhhCCCC---chhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchh--hh
Q 037237 53 GLRALSAFQSGDSKKALEMIKESISSHQDS---PHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLV--EL 127 (1267)
Q Consensus 53 ~~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s---~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~--~~ 127 (1267)
-+.++..+..||..++-+.++.++..||++ .++....|.+++... +. +-- +..+..++.-.|+.. .+
T Consensus 15 y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g----~~-~~A---~~~l~~~~~~~~d~~l~~~ 86 (145)
T PF09976_consen 15 YEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQG----DY-DEA---KAALEKALANAPDPELKPL 86 (145)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCC----CH-HHH---HHHHHHHHhhCCCHHHHHH
Confidence 356677778999999999999999999988 444445555555332 21 111 222333455444432 44
Q ss_pred HHH-HHHHHHHHHhhhchhHHHHHHHHHH
Q 037237 128 SFL-HAALLYKLAEINDKEWDVVIEACER 155 (1267)
Q Consensus 128 a~f-~A~lL~~la~~~~~~Y~~a~~ec~R 155 (1267)
+.+ .|.+++..++ |++|+.....
T Consensus 87 a~l~LA~~~~~~~~-----~d~Al~~L~~ 110 (145)
T PF09976_consen 87 ARLRLARILLQQGQ-----YDEALATLQQ 110 (145)
T ss_pred HHHHHHHHHHHcCC-----HHHHHHHHHh
Confidence 554 5777766554 8888887633
No 160
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=43.47 E-value=27 Score=26.58 Aligned_cols=15 Identities=20% Similarity=0.558 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHhcc
Q 037237 145 EWDVVIEACERMLKI 159 (1267)
Q Consensus 145 ~Y~~a~~ec~RaL~i 159 (1267)
.|++|+.-++|||.+
T Consensus 16 ~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 16 DYEEALEYYQRALEL 30 (34)
T ss_dssp -HHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHH
Confidence 599999999999998
No 161
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=41.97 E-value=63 Score=40.81 Aligned_cols=94 Identities=16% Similarity=-0.011 Sum_probs=73.9
Q ss_pred hhHHHHHHHHHhHhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchhh
Q 037237 47 PEINNEGLRALSAFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLVE 126 (1267)
Q Consensus 47 ~~i~~e~~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~~ 126 (1267)
..+-.=.-.|+-....|++.+||+.|...|..-|..+-+|.+-|.|+-....- +.+ .+.+..|..|.+.+=-
T Consensus 192 ~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~-------~~A-a~~~~~Ar~LD~~DRy 263 (517)
T PF12569_consen 192 TLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDL-------KEA-AEAMDEARELDLADRY 263 (517)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCH-------HHH-HHHHHHHHhCChhhHH
Confidence 34445556677777899999999999999977799999999999999876622 222 3334559999999999
Q ss_pred hHHHHHHHHHHHHhhhchhHHHHHHHH
Q 037237 127 LSFLHAALLYKLAEINDKEWDVVIEAC 153 (1267)
Q Consensus 127 ~a~f~A~lL~~la~~~~~~Y~~a~~ec 153 (1267)
|..=+|+-++..+. +++|..-|
T Consensus 264 iNsK~aKy~LRa~~-----~e~A~~~~ 285 (517)
T PF12569_consen 264 INSKCAKYLLRAGR-----IEEAEKTA 285 (517)
T ss_pred HHHHHHHHHHHCCC-----HHHHHHHH
Confidence 99999999998776 47777766
No 162
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=41.58 E-value=85 Score=32.75 Aligned_cols=74 Identities=19% Similarity=0.091 Sum_probs=54.7
Q ss_pred HHHHHHHhHhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHH---hCCCcchhhhh----hhhhhhhhccCCc
Q 037237 51 NEGLRALSAFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEK---AGKGTDTQLEH----LTTAASAVGRFPN 123 (1267)
Q Consensus 51 ~e~~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~---~~~~~~~k~~~----l~~~~~Av~l~p~ 123 (1267)
.-...|.-+...|++.+|++..+..+..+|..+..|..-|.++..+++. ..+. .....+ +....+++++.|+
T Consensus 74 ~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~-~~A~~~~~~a~~~~~~a~~~~p~ 152 (168)
T CHL00033 74 ILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDS-EIAEAWFDQAAEYWKQAIALAPG 152 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccH-HHHHHHHHHHHHHHHHHHHhCcc
Confidence 4566788888999999999999999999988888888889999877753 2232 111112 4556678888886
Q ss_pred hh
Q 037237 124 LV 125 (1267)
Q Consensus 124 s~ 125 (1267)
..
T Consensus 153 ~~ 154 (168)
T CHL00033 153 NY 154 (168)
T ss_pred cH
Confidence 65
No 163
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=41.34 E-value=40 Score=25.29 Aligned_cols=27 Identities=30% Similarity=0.568 Sum_probs=19.0
Q ss_pred HHHHHHHHHhhhchhHHHHHHHHHHHhccCCCC
Q 037237 131 HAALLYKLAEINDKEWDVVIEACERMLKIGDPY 163 (1267)
Q Consensus 131 ~A~lL~~la~~~~~~Y~~a~~ec~RaL~i~~P~ 163 (1267)
.|.+++.++ .|++|+.-+++|+.+ +|.
T Consensus 7 lg~~~~~~~-----~~~~A~~~~~~al~l-~p~ 33 (34)
T PF07719_consen 7 LGQAYYQLG-----NYEEAIEYFEKALEL-DPN 33 (34)
T ss_dssp HHHHHHHTT------HHHHHHHHHHHHHH-STT
T ss_pred HHHHHHHhC-----CHHHHHHHHHHHHHH-CcC
Confidence 344444444 589999999999998 454
No 164
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=41.25 E-value=54 Score=41.32 Aligned_cols=86 Identities=13% Similarity=0.107 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhh--CCCCchhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchhhhHH-HHHHHHHHHHhhh
Q 037237 66 KKALEMIKESISS--HQDSPHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLVELSF-LHAALLYKLAEIN 142 (1267)
Q Consensus 66 ~kAL~~~kd~~~~--h~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~~~a~-f~A~lL~~la~~~ 142 (1267)
.+|.+.++...+. .+..+.+|...|.+.... .+. +.- ..++++|..|.|+ . .++ +.++.+...|+
T Consensus 401 ~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~----g~~-~~A---~~~l~rAl~L~ps-~-~a~~~lG~~~~~~G~-- 468 (517)
T PRK10153 401 AALSTELDNIVALPELNVLPRIYEILAVQALVK----GKT-DEA---YQAINKAIDLEMS-W-LNYVLLGKVYELKGD-- 468 (517)
T ss_pred HHHHHHHHHhhhcccCcCChHHHHHHHHHHHhc----CCH-HHH---HHHHHHHHHcCCC-H-HHHHHHHHHHHHcCC--
Confidence 3444444443332 355678888887775432 233 222 3446779999995 4 344 55777666665
Q ss_pred chhHHHHHHHHHHHhccCCCCCccc
Q 037237 143 DKEWDVVIEACERMLKIGDPYDTLL 167 (1267)
Q Consensus 143 ~~~Y~~a~~ec~RaL~i~~P~dp~~ 167 (1267)
+++|+....||+.+ +|.+|.-
T Consensus 469 ---~~eA~~~~~~A~~L-~P~~pt~ 489 (517)
T PRK10153 469 ---NRLAADAYSTAFNL-RPGENTL 489 (517)
T ss_pred ---HHHHHHHHHHHHhc-CCCCchH
Confidence 79999999999998 6887743
No 165
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=40.63 E-value=20 Score=27.87 Aligned_cols=22 Identities=18% Similarity=0.407 Sum_probs=19.7
Q ss_pred ecCccccccCChHHHHHHhHhh
Q 037237 331 ECFVCVEKIGNPQLCEKHFRSS 352 (1267)
Q Consensus 331 ~C~~C~~kF~d~~~~~~H~~~e 352 (1267)
.|..|.+.|.+...+..|+..+
T Consensus 5 ~C~~C~~~~~~~~~~~~H~~gk 26 (35)
T smart00451 5 YCKLCNVTFTDEISVEAHLKGK 26 (35)
T ss_pred EccccCCccCCHHHHHHHHChH
Confidence 4999999999999999999764
No 166
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=40.30 E-value=28 Score=42.34 Aligned_cols=26 Identities=12% Similarity=0.440 Sum_probs=18.3
Q ss_pred HHhHhhcC-CHHHHHHHHHHHHhhCCC
Q 037237 56 ALSAFQSG-DSKKALEMIKESISSHQD 81 (1267)
Q Consensus 56 a~~~~~~G-nh~kAL~~~kd~~~~h~~ 81 (1267)
.+.-+-.| +-+++|+-+-+--..|.|
T Consensus 267 lFaqlNqGe~iTsgLkkVt~dmkThKN 293 (480)
T KOG2675|consen 267 LFAQLNQGEGITSGLKKVTDDMKTHKN 293 (480)
T ss_pred HHHHHhccchhhhhhhhCChhhhcccC
Confidence 34445567 778889888887777754
No 167
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=38.96 E-value=1.1e+02 Score=36.66 Aligned_cols=77 Identities=22% Similarity=0.261 Sum_probs=51.5
Q ss_pred HHHHHHHHHHH---HHHHhhhhcccccccchhhHHHHHHHhhhccCCChhhhccceeeehHHHHHHHHhhcc--chHHHH
Q 037237 239 EMRKKQVEEII---KDLEQQKTYYSTEKYEQNVEKVEKYVSFWSSGLNSDKKRGFLKVNKEELKKYVKSLKN--DFVEKI 313 (1267)
Q Consensus 239 e~r~~eie~~~---~rll~~~~~~~~~k~~~~~~~~~~~r~yW~~~ls~e~kr~FL~V~i~eLksy~~~~~~--~~~~~~ 313 (1267)
|++.++.|--+ .++|-+. .......+-++.+|.||.+ ++- -|-.=+ |..|.+.|....+ +...++
T Consensus 41 e~~i~~kE~~Ilel~~ll~~~-----~~~~~lr~li~~~Rpf~~~-v~K-akaaKl---vR~Lvd~~~~~~~~~~~~i~l 110 (411)
T KOG1463|consen 41 EARIKEKEQSILELGDLLAKE-----GDAEELRDLITSLRPFLSS-VSK-AKAAKL---VRSLVDMFLKIDDGTGDQIEL 110 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-----cchhHHHHHHHHHHHHHHH-hhh-HHHHHH---HHHHHHHHccCCCCcchHHHH
Confidence 44555555555 6666655 5555778889999999998 652 222212 3456666666544 567889
Q ss_pred HHHHHHHHHhcC
Q 037237 314 FSEALSFAEEHK 325 (1267)
Q Consensus 314 Ls~al~fak~~~ 325 (1267)
+.+++.+|+.++
T Consensus 111 ~~~cIeWA~~ek 122 (411)
T KOG1463|consen 111 CTECIEWAKREK 122 (411)
T ss_pred HHHHHHHHHHHh
Confidence 999999999665
No 168
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=38.59 E-value=5.6e+02 Score=32.60 Aligned_cols=108 Identities=19% Similarity=0.119 Sum_probs=61.8
Q ss_pred hhHHHHHHHHHhHhhcCCHHHHHHHHHHHHhhC-CCCchhhhhhhHHHHHHHHHhCCCcchhhhh-hhhhhhhhccC---
Q 037237 47 PEINNEGLRALSAFQSGDSKKALEMIKESISSH-QDSPHLHCLEAFIHHSLAEKAGKGTDTQLEH-LTTAASAVGRF--- 121 (1267)
Q Consensus 47 ~~i~~e~~~a~~~~~~Gnh~kAL~~~kd~~~~h-~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~-l~~~~~Av~l~--- 121 (1267)
..+..=+.=|..++.+|.+.||....|..+..= ..+.+-|-+-+.+.-.+|...-+- .|+.. +..+.+|+.-.
T Consensus 197 ~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~--~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 197 ERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSL--GKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHh
Confidence 555555667888999999999999988877552 233455656566555555433221 11111 11122222211
Q ss_pred --CchhhhHHHH---HHHHHHHHhhhchhHHHHHHHHHHHhccCC
Q 037237 122 --PNLVELSFLH---AALLYKLAEINDKEWDVVIEACERMLKIGD 161 (1267)
Q Consensus 122 --p~s~~~a~f~---A~lL~~la~~~~~~Y~~a~~ec~RaL~i~~ 161 (1267)
++++..|.++ |.+++..| -|++|..-|+||+.|..
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~G-----Kf~EA~~~~e~Al~I~~ 314 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQG-----KFAEAEEYCERALEIYE 314 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccC-----ChHHHHHHHHHHHHHHH
Confidence 3344443332 34444433 48999999999999953
No 169
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=38.59 E-value=3.4e+02 Score=27.45 Aligned_cols=108 Identities=17% Similarity=0.038 Sum_probs=63.9
Q ss_pred hHHHHHHHHHhHhhcCCHHHHHHHHHHHHhhCCCCchhhhhh---------------hHHHHHHHHHhCCCcchhhhh--
Q 037237 48 EINNEGLRALSAFQSGDSKKALEMIKESISSHQDSPHLHCLE---------------AFIHHSLAEKAGKGTDTQLEH-- 110 (1267)
Q Consensus 48 ~i~~e~~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~q---------------g~v~~~lA~~~~~~~~~k~~~-- 110 (1267)
.....+.+|..+.+.|++..|+..+++.++-+.+.++.-... -.+..+++.... .+-.|
T Consensus 5 ~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~----~~~~~~~ 80 (146)
T PF03704_consen 5 RFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALL----EAGDYEE 80 (146)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHH----HTT-HHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH----hccCHHH
Confidence 345667888889999999999999999998884443322111 111112221110 01122
Q ss_pred -hhhhhhhhccCCchhhhHHHHHHHHHHHHhhh--chhHHHHHHHHHHHhcc
Q 037237 111 -LTTAASAVGRFPNLVELSFLHAALLYKLAEIN--DKEWDVVIEACERMLKI 159 (1267)
Q Consensus 111 -l~~~~~Av~l~p~s~~~a~f~A~lL~~la~~~--~~~Y~~a~~ec~RaL~i 159 (1267)
+..+++++...|-+-.+-...-++++.+|+.- -+.|+++.+.-.+-|.+
T Consensus 81 a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~ 132 (146)
T PF03704_consen 81 ALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGI 132 (146)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCc
Confidence 55678899999999888888888888888752 11666666666555555
No 170
>PHA00733 hypothetical protein
Probab=38.39 E-value=20 Score=36.87 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=22.9
Q ss_pred eecCccccccCChHHHHHHhHhhhc
Q 037237 330 SECFVCVEKIGNPQLCEKHFRSSHW 354 (1267)
Q Consensus 330 W~C~~C~~kF~d~~~~~~H~~~eH~ 354 (1267)
..|+.|++.|.....++.|+...|-
T Consensus 100 ~~C~~CgK~F~~~~sL~~H~~~~h~ 124 (128)
T PHA00733 100 KVCPVCGKEFRNTDSTLDHVCKKHN 124 (128)
T ss_pred ccCCCCCCccCCHHHHHHHHHHhcC
Confidence 3999999999999999999999984
No 171
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=37.89 E-value=67 Score=37.37 Aligned_cols=34 Identities=29% Similarity=0.440 Sum_probs=19.2
Q ss_pred ccCCCchhHHHHHHHHHhHhhcCCHH-HHHHHHHH
Q 037237 41 AINSSDPEINNEGLRALSAFQSGDSK-KALEMIKE 74 (1267)
Q Consensus 41 ~~~~~~~~i~~e~~~a~~~~~~Gnh~-kAL~~~kd 74 (1267)
...|=||.-=-=..+|++.+.+..|. +|+++|+-
T Consensus 25 ~~~~FDP~aLERaAkAlrel~~S~~Ak~afel~k~ 59 (276)
T PF12037_consen 25 TASGFDPEALERAAKALRELNSSPHAKKAFELMKK 59 (276)
T ss_pred ccCCCCcHHHHHHHHHHHHHhcChhHHHHHHHHHH
Confidence 34556644333345566666555554 48877764
No 172
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=37.65 E-value=55 Score=30.93 Aligned_cols=68 Identities=13% Similarity=0.154 Sum_probs=48.2
Q ss_pred HHHHHHHhHhhcCCHHHHHHHHHHHHhhCCCC---chhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchhh
Q 037237 51 NEGLRALSAFQSGDSKKALEMIKESISSHQDS---PHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLVE 126 (1267)
Q Consensus 51 ~e~~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s---~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~~ 126 (1267)
..-..|.-+++.|++..|+...++++..+|+. +.++..-|.++.++ ++. +-- +..+.+++..+|++..
T Consensus 41 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~----~~~-~~A---~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 41 AHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQEL----GDK-EKA---KATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHh----CCh-HHH---HHHHHHHHHHCcCChh
Confidence 34557888999999999999999999888765 45566777776543 233 222 2334558888898754
No 173
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=37.04 E-value=1.4e+02 Score=37.44 Aligned_cols=103 Identities=17% Similarity=0.038 Sum_probs=62.3
Q ss_pred HHHHhHhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHhCCCc---------------chhhhh--------
Q 037237 54 LRALSAFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEKAGKGT---------------DTQLEH-------- 110 (1267)
Q Consensus 54 ~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~~~~---------------~~k~~~-------- 110 (1267)
.-|...++=|||+|||.....+. -.+...-+|-+-|+|+..-|--.=|.. +.|.+|
T Consensus 514 ~~ayV~L~Lgd~i~AL~~a~kLL-q~~~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df~~~ 592 (696)
T KOG2471|consen 514 NMAYVELELGDPIKALSAATKLL-QLADLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDFDQW 592 (696)
T ss_pred HHHHHHHHhcChhhHHHHHHHHH-hhhhhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhhhhh
Confidence 34677789999999999888887 445666778888999988774443321 222222
Q ss_pred ------hhh-hhhhhccCCchhhhHHHHHHHHHHHHhhh--chhHHHHHHHHHHHhcc
Q 037237 111 ------LTT-AASAVGRFPNLVELSFLHAALLYKLAEIN--DKEWDVVIEACERMLKI 159 (1267)
Q Consensus 111 ------l~~-~~~Av~l~p~s~~~a~f~A~lL~~la~~~--~~~Y~~a~~ec~RaL~i 159 (1267)
+++ ..|+-.+.|-+++-|+. .++|.||.-+ ...|++|-.--..|..+
T Consensus 593 ~~~~e~l~~s~~r~~q~~~~sv~~Ar~--v~~~nLa~a~alq~~~dqAk~ll~~aatl 648 (696)
T KOG2471|consen 593 WKHTETLDPSTGRTRQSVFLSVEEARG--VLFANLAAALALQGHHDQAKSLLTHAATL 648 (696)
T ss_pred hccccccCCcCCCCcccccCCHHHHhH--HHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 222 23666667667766652 2333433322 23577765555555555
No 174
>COG3478 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=36.73 E-value=29 Score=31.92 Aligned_cols=35 Identities=26% Similarity=0.516 Sum_probs=26.4
Q ss_pred cCCcccCCcCCCccc----eehccccCCcEEEEEeeccc
Q 037237 1140 LNGLLNCGACGQINY----IHHTLWRLPHVFTIGMLRVC 1174 (1267)
Q Consensus 1140 ~~~~~~C~~Cgk~~~----kq~tI~rlP~VLtIhLKRFe 1174 (1267)
|.+.+.|+.||..+. ++.+=..+..||-||.++|-
T Consensus 1 M~~~~kCpKCgn~~~~ekei~~tg~~lskifdvq~n~f~ 39 (68)
T COG3478 1 MKNAFKCPKCGNTNYEEKEIAATGGGLSKIFDVQNNKFI 39 (68)
T ss_pred CCccccCCCcCCcchhhceeeccCCCcceeEEecccEEE
Confidence 345677999998875 23333578899999999986
No 175
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.95 E-value=69 Score=39.95 Aligned_cols=104 Identities=15% Similarity=0.207 Sum_probs=68.6
Q ss_pred HHHHHHHHhHhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHH---HhC--------CCcchhhhh--------
Q 037237 50 NNEGLRALSAFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAE---KAG--------KGTDTQLEH-------- 110 (1267)
Q Consensus 50 ~~e~~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~---~~~--------~~~~~k~~~-------- 110 (1267)
...+-||+-+.++.+..|--+-..+.....|.-+-+++-.|.|.+=+-. .+. || .--.+|
T Consensus 361 ~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~p-e~~~~~iQl~~a~Y 439 (606)
T KOG0547|consen 361 SLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDP-ENAYAYIQLCCALY 439 (606)
T ss_pred hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcCh-hhhHHHHHHHHHHH
Confidence 3478899999999998888877777777777767777777777664321 111 22 111222
Q ss_pred --------hhhhhhhhccCCchhhhHHHHHHHHHHHHhhhchhHHHHHHHHHHHhcc
Q 037237 111 --------LTTAASAVGRFPNLVELSFLHAALLYKLAEINDKEWDVVIEACERMLKI 159 (1267)
Q Consensus 111 --------l~~~~~Av~l~p~s~~~a~f~A~lL~~la~~~~~~Y~~a~~ec~RaL~i 159 (1267)
......+...||++++.-.|+|-.|-.=. .+++|++-=..|+..
T Consensus 440 r~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqq-----qFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 440 RQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQ-----QFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHH-----hHHHHHHHHHHHHhh
Confidence 22356688999999999999999875533 345555555444444
No 176
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=35.85 E-value=75 Score=33.40 Aligned_cols=75 Identities=20% Similarity=0.119 Sum_probs=51.4
Q ss_pred HHHHHHHhHhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHhC---CCcchhhhh---hhhhhhhhccCCch
Q 037237 51 NEGLRALSAFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEKAG---KGTDTQLEH---LTTAASAVGRFPNL 124 (1267)
Q Consensus 51 ~e~~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~---~~~~~k~~~---l~~~~~Av~l~p~s 124 (1267)
.--..|.-..+.|++.+|++..+..+..+|..+..+..-|.++..++.... +...+...| ++.++++..+.|+.
T Consensus 74 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 74 ILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 345567778889999999999999999999888888888888887654321 110111122 44555566666665
Q ss_pred h
Q 037237 125 V 125 (1267)
Q Consensus 125 ~ 125 (1267)
.
T Consensus 154 ~ 154 (172)
T PRK02603 154 Y 154 (172)
T ss_pred H
Confidence 3
No 177
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=35.58 E-value=29 Score=37.45 Aligned_cols=27 Identities=30% Similarity=0.321 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhcCceeeeecCccccccC
Q 037237 311 EKIFSEALSFAEEHKTWKFSECFVCVEKIG 340 (1267)
Q Consensus 311 ~~~Ls~al~fak~~~~WrfW~C~~C~~kF~ 340 (1267)
...+..+|+..++++ .|+||+||=.+.
T Consensus 119 ~~~~~~~Le~~~~~~---~~vC~vCGy~~~ 145 (166)
T COG1592 119 AEMFRGLLERLEEGK---VWVCPVCGYTHE 145 (166)
T ss_pred HHHHHHHHHhhhcCC---EEEcCCCCCccc
Confidence 566899999998777 899999975544
No 178
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=34.58 E-value=1.1e+02 Score=38.82 Aligned_cols=87 Identities=14% Similarity=0.237 Sum_probs=69.2
Q ss_pred cCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchhhhHHHHHHHHHHHHhh
Q 037237 62 SGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLVELSFLHAALLYKLAEI 141 (1267)
Q Consensus 62 ~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~~~a~f~A~lL~~la~~ 141 (1267)
.|++.||..-.+-.+...|+...+ .-+|+..+.|+ +--..-+.|++||++|-|+-+..=.=.|.+.+.||
T Consensus 443 s~efdraiDcf~~AL~v~Pnd~~l-------WNRLGAtLAN~-~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG-- 512 (579)
T KOG1125|consen 443 SGEFDRAVDCFEAALQVKPNDYLL-------WNRLGATLANG-NRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLG-- 512 (579)
T ss_pred chHHHHHHHHHHHHHhcCCchHHH-------HHHhhHHhcCC-cccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhh--
Confidence 788888888888888888877654 45666666676 32223399999999999999988777788888887
Q ss_pred hchhHHHHHHHHHHHhccCC
Q 037237 142 NDKEWDVVIEACERMLKIGD 161 (1267)
Q Consensus 142 ~~~~Y~~a~~ec~RaL~i~~ 161 (1267)
+|++|+..--+||.+..
T Consensus 513 ---~ykEA~~hlL~AL~mq~ 529 (579)
T KOG1125|consen 513 ---AYKEAVKHLLEALSMQR 529 (579)
T ss_pred ---hHHHHHHHHHHHHHhhh
Confidence 59999999999999953
No 179
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=34.01 E-value=1.3e+02 Score=36.87 Aligned_cols=86 Identities=16% Similarity=0.253 Sum_probs=59.0
Q ss_pred cCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchhhhHHHHHHHHHHHHhh
Q 037237 62 SGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLVELSFLHAALLYKLAEI 141 (1267)
Q Consensus 62 ~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~~~a~f~A~lL~~la~~ 141 (1267)
.|++..|+.+++++..++|..+. +-+.++. . .|. . ...+.-+.+|+...|++..+-..-|..|..-+
T Consensus 182 t~~~~~ai~lle~L~~~~pev~~---~LA~v~l----~-~~~-E--~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~-- 248 (395)
T PF09295_consen 182 TQRYDEAIELLEKLRERDPEVAV---LLARVYL----L-MNE-E--VEAIRLLNEALKENPQDSELLNLQAEFLLSKK-- 248 (395)
T ss_pred cccHHHHHHHHHHHHhcCCcHHH---HHHHHHH----h-cCc-H--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC--
Confidence 46789999999999988864221 1122221 1 232 2 23355577899999999777777777666633
Q ss_pred hchhHHHHHHHHHHHhccCCCCC
Q 037237 142 NDKEWDVVIEACERMLKIGDPYD 164 (1267)
Q Consensus 142 ~~~~Y~~a~~ec~RaL~i~~P~d 164 (1267)
.|+.|+.-|++|... .|.+
T Consensus 249 ---~~~lAL~iAk~av~l-sP~~ 267 (395)
T PF09295_consen 249 ---KYELALEIAKKAVEL-SPSE 267 (395)
T ss_pred ---CHHHHHHHHHHHHHh-Cchh
Confidence 589999999999998 4654
No 180
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=33.87 E-value=3.3e+02 Score=31.63 Aligned_cols=95 Identities=18% Similarity=0.166 Sum_probs=56.3
Q ss_pred HHHHHhhCCCCchhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchhhhHHHHHHHHHHHHhhhchhHHHHHH
Q 037237 72 IKESISSHQDSPHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLVELSFLHAALLYKLAEINDKEWDVVIE 151 (1267)
Q Consensus 72 ~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~~~a~f~A~lL~~la~~~~~~Y~~a~~ 151 (1267)
++.+| ++|.-+--..-.+--|+++- ..+.. ...-+||.++.||++.=-+|.-..+.. .+.|.+++.
T Consensus 34 ~raI~-~nP~~~~Y~tnralchlk~~-~~~~v-------~~dcrralql~~N~vk~h~flg~~~l~-----s~~~~eaI~ 99 (284)
T KOG4642|consen 34 SRAIC-INPTVASYYTNRALCHLKLK-HWEPV-------EEDCRRALQLDPNLVKAHYFLGQWLLQ-----SKGYDEAIK 99 (284)
T ss_pred HHHHh-cCCCcchhhhhHHHHHHHhh-hhhhh-------hhhHHHHHhcChHHHHHHHHHHHHHHh-----hccccHHHH
Confidence 44444 77755444444444444421 11111 334588999999998755555444333 458999999
Q ss_pred HHHHH--hccCCCCCcccCCCcccccccchhhhhhhc
Q 037237 152 ACERM--LKIGDPYDTLLGSNLVDMFTGSLLEKEKVG 186 (1267)
Q Consensus 152 ec~Ra--L~i~~P~dp~~~~~~~d~~~~~l~~~~~~~ 186 (1267)
.-.|| |...+|.-|+. + +...|.....+.
T Consensus 100 ~Lqra~sl~r~~~~~~~~--d----i~~~L~~ak~~~ 130 (284)
T KOG4642|consen 100 VLQRAYSLLREQPFTFGD--D----IPKALRDAKKKR 130 (284)
T ss_pred HHHHHHHHHhcCCCCCcc--h----HHHHHHHHHhCc
Confidence 99999 66777765444 3 235665554433
No 181
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.95 E-value=2.7e+02 Score=35.13 Aligned_cols=87 Identities=15% Similarity=0.219 Sum_probs=65.1
Q ss_pred hhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchhhhHHHHHHHHHHHH
Q 037237 60 FQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLVELSFLHAALLYKLA 139 (1267)
Q Consensus 60 ~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~~~a~f~A~lL~~la 139 (1267)
|-.||.--|.+-++..|.-||.-.-+ +|+..+ ..-|. +-...+..-..+|+.+.|+...+-|-++...|.|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~l-----yI~~a~--~y~d~-~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~ 408 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNSL-----YIKRAA--AYADE-NQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQ 408 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccchH-----HHHHHH--HHhhh-hccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHH
Confidence 55899999999999999888643333 333333 22232 22334444567799999999999999999999998
Q ss_pred hhhchhHHHHHHHHHHHhcc
Q 037237 140 EINDKEWDVVIEACERMLKI 159 (1267)
Q Consensus 140 ~~~~~~Y~~a~~ec~RaL~i 159 (1267)
+ |++|++.=+.|.++
T Consensus 409 q-----~e~A~aDF~Kai~L 423 (606)
T KOG0547|consen 409 Q-----YEEAIADFQKAISL 423 (606)
T ss_pred H-----HHHHHHHHHHHhhc
Confidence 6 89999999998888
No 182
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=32.41 E-value=99 Score=37.93 Aligned_cols=96 Identities=18% Similarity=0.299 Sum_probs=69.3
Q ss_pred HHHHHHhHhhcCCHHHHHHHHHHHHhhCCCC----chhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchhhh
Q 037237 52 EGLRALSAFQSGDSKKALEMIKESISSHQDS----PHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLVEL 127 (1267)
Q Consensus 52 e~~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s----~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~~~ 127 (1267)
==+++-++|+.||+.+|-+.-.+.+..-|++ +.++.-++.|...|.+-- +. |..-.+|+.+.|..++-
T Consensus 252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~-ea-------isdc~~Al~iD~syika 323 (486)
T KOG0550|consen 252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLR-EA-------ISDCNEALKIDSSYIKA 323 (486)
T ss_pred HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCch-hh-------hhhhhhhhhcCHHHHHH
Confidence 3467778999999999999999999777653 444555555555554321 22 44456788888888877
Q ss_pred HHHHHHHHHHHHhhhchhHHHHHHHHHHHhccC
Q 037237 128 SFLHAALLYKLAEINDKEWDVVIEACERMLKIG 160 (1267)
Q Consensus 128 a~f~A~lL~~la~~~~~~Y~~a~~ec~RaL~i~ 160 (1267)
-+-+|.-...|.+ |+++|+-.+.|+..+
T Consensus 324 ll~ra~c~l~le~-----~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 324 LLRRANCHLALEK-----WEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHhhc
Confidence 7777777666664 899999999888874
No 183
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=31.80 E-value=25 Score=38.36 Aligned_cols=20 Identities=5% Similarity=0.076 Sum_probs=13.7
Q ss_pred hhccCCCCCCcchHHHHHHHhh
Q 037237 943 YWRQFENGTTDSFVNMIVKSLW 964 (1267)
Q Consensus 943 ~gL~N~~GgNTCFLNSILQcL~ 964 (1267)
.|+.|. .|||++|+++|.+-
T Consensus 34 t~~PN~--~dnCWlNaL~QL~~ 53 (193)
T PF05408_consen 34 TGLPNN--HDNCWLNALLQLFR 53 (193)
T ss_dssp E----S--SSTHHHHHHHHHHH
T ss_pred ecCCCC--CCChHHHHHHHHHH
Confidence 478885 99999999999764
No 184
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=31.59 E-value=2.4e+02 Score=34.18 Aligned_cols=103 Identities=11% Similarity=0.149 Sum_probs=79.9
Q ss_pred CCchhHHHHHHHHHhHhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCc
Q 037237 44 SSDPEINNEGLRALSAFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPN 123 (1267)
Q Consensus 44 ~~~~~i~~e~~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~ 123 (1267)
++.+.|..+.|--...|.||...-||-.---.+.-.|++..+.+-.|++|..+.+.- .. |.-+.|-.+|-|+
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk-~a-------l~Dl~rVlelKpD 104 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSK-AA-------LQDLSRVLELKPD 104 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCc-cc-------hhhHHHHHhcCcc
Confidence 333788889999999999999999998888888888999999999999999987542 11 4455668888887
Q ss_pred hhhhHHHHHHHHHHHHhhhchhHHHHHHHHHHHhcc
Q 037237 124 LVELSFLHAALLYKLAEINDKEWDVVIEACERMLKI 159 (1267)
Q Consensus 124 s~~~a~f~A~lL~~la~~~~~~Y~~a~~ec~RaL~i 159 (1267)
=..----++.+|...|+ |+.|.+--+.-|.-
T Consensus 105 F~~ARiQRg~vllK~Ge-----le~A~~DF~~vl~~ 135 (504)
T KOG0624|consen 105 FMAARIQRGVVLLKQGE-----LEQAEADFDQVLQH 135 (504)
T ss_pred HHHHHHHhchhhhhccc-----HHHHHHHHHHHHhc
Confidence 65544466777888775 68887777666654
No 185
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein. The structure of this protein has shown it adopts a fold similar to that of de-ubiquitinating enzymes []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 3MP2_A 3EWP_B 3EWO_B 2FE8_A 3MJ5_B 3EKE_A 3EJF_A 3JZT_H 3ETI_E 3E9S_A.
Probab=30.61 E-value=51 Score=39.11 Aligned_cols=70 Identities=16% Similarity=0.229 Sum_probs=37.3
Q ss_pred CCcchHHHHHHHhhCcHH-HHHHHhccCccccCCCCCCcHHHHHHHHHHHHhcccCCCCccccccchHHHHHHHhcccch
Q 037237 951 TTDSFVNMIVKSLWHLRE-FREEFMRRRQTIHNHIGDPCIVCALYDMFAALSTACEDNQVEVPSAPSSLRVALTTYSYDK 1029 (1267)
Q Consensus 951 gNTCFLNSILQcL~H~p~-fRe~fLs~~~~~h~~~~~~CV~CAL~~LFsal~~ss~~~~~e~~vsPs~Lr~aLs~i~~ds 1029 (1267)
-||||.|+++=.|=++.+ |+ .=++++++..|..+ .|..|..-+-.+.
T Consensus 109 dNNCwVna~~~~LQ~~~~~f~-------------------~~~l~~aw~~f~~G----------~~~~fVa~~Ya~~--- 156 (320)
T PF08715_consen 109 DNNCWVNAACLQLQALKIKFK-------------------SPGLDEAWNEFKAG----------DPAPFVAWCYAST--- 156 (320)
T ss_dssp TTTHHHHHHHHHHTTST--BS-------------------SHHHHHHHHHHHTT------------HHHHHHHHHHT---
T ss_pred CCCcHHHHHHHHHHhcCCccC-------------------CHHHHHHHHHHhCC----------ChHHHHHHHHHHc---
Confidence 689999999855443321 11 02466777777632 2333333222221
Q ss_pred HHHhhhhccchHHHHHHHHHHHhh
Q 037237 1030 NICKQAKMNDSSELLQAILESLHE 1053 (1267)
Q Consensus 1030 ~~F~~g~QqDAhEfL~~LLd~LH~ 1053 (1267)
.+..|.+.||+++|..||+-++.
T Consensus 157 -~~~~G~~gDa~~~L~~ll~~~~~ 179 (320)
T PF08715_consen 157 -NAKKGDPGDAEYVLSKLLKDADL 179 (320)
T ss_dssp -T--TTS---HHHHHHHHHTTB-T
T ss_pred -CCCCCCCcCHHHHHHHHHHhccc
Confidence 34568899999999999876664
No 186
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=30.60 E-value=23 Score=40.20 Aligned_cols=28 Identities=14% Similarity=0.265 Sum_probs=23.8
Q ss_pred CCCcchHHHHHHHhhCcHHHHHHHhccC
Q 037237 950 GTTDSFVNMIVKSLWHLREFREEFMRRR 977 (1267)
Q Consensus 950 GgNTCFLNSILQcL~H~p~fRe~fLs~~ 977 (1267)
.||.||+|+++|+|..+--....|....
T Consensus 5 ~~~~~~~~~~~~~~~~i~~~~~~F~~~~ 32 (245)
T cd02673 5 TGNSCYFNSTMQALSSIGKINTEFDNDD 32 (245)
T ss_pred cCCeeeehhHHHHHHHHhhhhhhcCCCc
Confidence 6999999999999998887777776654
No 187
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=30.36 E-value=1.8e+02 Score=33.65 Aligned_cols=108 Identities=19% Similarity=0.176 Sum_probs=78.1
Q ss_pred cCCCchhHHHHHHHHHhHhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHhCCCcchhhhh-hhhhhhhhcc
Q 037237 42 INSSDPEINNEGLRALSAFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEKAGKGTDTQLEH-LTTAASAVGR 120 (1267)
Q Consensus 42 ~~~~~~~i~~e~~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~-l~~~~~Av~l 120 (1267)
-++.|..| .=|++++ ..+|+-..+|..+..+.-.|+...-+|..||.-.+... |. .+ +..+++|+.+
T Consensus 62 ~~p~d~~i-~~~a~a~--~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g----~~-----~~A~~~~rkA~~l 129 (257)
T COG5010 62 RNPEDLSI-AKLATAL--YLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNG----NF-----GEAVSVLRKAARL 129 (257)
T ss_pred cCcchHHH-HHHHHHH--HhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhc----ch-----HHHHHHHHHHhcc
Confidence 34556677 5555555 45688888998999987788877777777777665543 21 12 6778999999
Q ss_pred CCchhhhHHHHHHHHHHHHhhhchhHHHHHHHHHHHhccCCCCCccc
Q 037237 121 FPNLVELSFLHAALLYKLAEINDKEWDVVIEACERMLKIGDPYDTLL 167 (1267)
Q Consensus 121 ~p~s~~~a~f~A~lL~~la~~~~~~Y~~a~~ec~RaL~i~~P~dp~~ 167 (1267)
.|++-+.-...+..|-.+|+- +.|-..=..||.+ .|.+|..
T Consensus 130 ~p~d~~~~~~lgaaldq~Gr~-----~~Ar~ay~qAl~L-~~~~p~~ 170 (257)
T COG5010 130 APTDWEAWNLLGAALDQLGRF-----DEARRAYRQALEL-APNEPSI 170 (257)
T ss_pred CCCChhhhhHHHHHHHHccCh-----hHHHHHHHHHHHh-ccCCchh
Confidence 999999999999999888874 5555555556666 4777666
No 188
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=30.24 E-value=5.5e+02 Score=29.20 Aligned_cols=90 Identities=17% Similarity=0.212 Sum_probs=54.5
Q ss_pred hHhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHhCCCcchhhh----hhhhhhhhhccCCchhhhHHHHHH
Q 037237 58 SAFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEKAGKGTDTQLE----HLTTAASAVGRFPNLVELSFLHAA 133 (1267)
Q Consensus 58 ~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~----~l~~~~~Av~l~p~s~~~a~f~A~ 133 (1267)
..|..|++.+|+.--.+.+..-|..+- .+++-.|-.-|.- -+|++ -++.+.+|++|.|....---=+|.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~--e~rsIly~Nraaa-----~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAe 176 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTST--EERSILYSNRAAA-----LIKLRKWESAIEDCSKAIELNPTYEKALERRAE 176 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccH--HHHHHHHhhhHHH-----HHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHH
Confidence 358899999999888887766664433 4444444333311 12222 277788888888866554444466
Q ss_pred HHHHHHhhhchhHHHHHHHHHHHhcc
Q 037237 134 LLYKLAEINDKEWDVVIEACERMLKI 159 (1267)
Q Consensus 134 lL~~la~~~~~~Y~~a~~ec~RaL~i 159 (1267)
++=.+ ++ |++|+.--+.-|.+
T Consensus 177 ayek~-ek----~eealeDyKki~E~ 197 (271)
T KOG4234|consen 177 AYEKM-EK----YEEALEDYKKILES 197 (271)
T ss_pred HHHhh-hh----HHHHHHHHHHHHHh
Confidence 54343 33 77777777665554
No 189
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=29.96 E-value=97 Score=26.23 Aligned_cols=47 Identities=15% Similarity=0.070 Sum_probs=37.4
Q ss_pred HHHHHHHhHhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHH
Q 037237 51 NEGLRALSAFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLA 97 (1267)
Q Consensus 51 ~e~~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA 97 (1267)
.-...|.-....|+..+|++.++..+..+|....++..-|.++....
T Consensus 36 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 36 AYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 34556777788899999999999999888877777777777776654
No 190
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=28.94 E-value=21 Score=35.90 Aligned_cols=14 Identities=21% Similarity=0.368 Sum_probs=12.4
Q ss_pred eecCccccccCChH
Q 037237 330 SECFVCVEKIGNPQ 343 (1267)
Q Consensus 330 W~C~~C~~kF~d~~ 343 (1267)
++||.||.|||+..
T Consensus 10 R~Cp~CG~kFYDLn 23 (108)
T PF09538_consen 10 RTCPSCGAKFYDLN 23 (108)
T ss_pred ccCCCCcchhccCC
Confidence 58999999999876
No 191
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=28.93 E-value=1.8e+02 Score=35.42 Aligned_cols=85 Identities=20% Similarity=0.120 Sum_probs=59.1
Q ss_pred HHHHhHhh---cCCHHHHHHHHHH-HHhhCCCCchhhhhhhHHHHHHHHHhCCCcchhhh--hhhhhhhhhccCCchhhh
Q 037237 54 LRALSAFQ---SGDSKKALEMIKE-SISSHQDSPHLHCLEAFIHHSLAEKAGKGTDTQLE--HLTTAASAVGRFPNLVEL 127 (1267)
Q Consensus 54 ~~a~~~~~---~Gnh~kAL~~~kd-~~~~h~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~--~l~~~~~Av~l~p~s~~~ 127 (1267)
--|+..-| .||+.||+.+|.. +....+.++=..++-|.|+..+....... +.... -+.++++|-+..|+- +
T Consensus 184 ~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~-d~~~ldkAi~~Y~kgFe~~~~~--Y 260 (374)
T PF13281_consen 184 QYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFT-DRESLDKAIEWYRKGFEIEPDY--Y 260 (374)
T ss_pred HHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCcc-chHHHHHHHHHHHHHHcCCccc--c
Confidence 45667777 8999999999999 65666788999999999999998763222 22211 157788888888654 3
Q ss_pred HHH-HHHHHHHHHhh
Q 037237 128 SFL-HAALLYKLAEI 141 (1267)
Q Consensus 128 a~f-~A~lL~~la~~ 141 (1267)
+-- +|.||...|.+
T Consensus 261 ~GIN~AtLL~~~g~~ 275 (374)
T PF13281_consen 261 SGINAATLLMLAGHD 275 (374)
T ss_pred chHHHHHHHHHcCCc
Confidence 332 34555555544
No 192
>PF15601 Imm42: Immunity protein 42
Probab=28.58 E-value=96 Score=32.55 Aligned_cols=47 Identities=19% Similarity=0.232 Sum_probs=38.5
Q ss_pred hccCCChhhhc---cceeeehHHHHHHHHhhccchHHHHHHHHHHHHHhcC
Q 037237 278 WSSGLNSDKKR---GFLKVNKEELKKYVKSLKNDFVEKIFSEALSFAEEHK 325 (1267)
Q Consensus 278 W~~~ls~e~kr---~FL~V~i~eLksy~~~~~~~~~~~~Ls~al~fak~~~ 325 (1267)
|.- -+...+- +-+.-.|..|-.||-.+.+...-++|.+|+++|++.+
T Consensus 79 WD~-~dl~~~ppWg~~i~~~i~~L~~yFvt~dG~~~f~~l~~a~~~a~~~~ 128 (134)
T PF15601_consen 79 WDI-EDLSKQPPWGDNISPDITSLSDYFVTSDGKDLFEVLFRALESAIEEK 128 (134)
T ss_pred ech-hhcccCCCCcccCCCCCCcHHHHhcCcchhhHHHHHHHHHHHHHhcC
Confidence 777 5554443 4488899999999999999889999999999998654
No 193
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=28.58 E-value=9.2e+02 Score=29.78 Aligned_cols=95 Identities=20% Similarity=0.223 Sum_probs=63.3
Q ss_pred HHHHHHhHhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchhhhHH-H
Q 037237 52 EGLRALSAFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLVELSF-L 130 (1267)
Q Consensus 52 e~~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~~~a~-f 130 (1267)
--..|+..+.-||+.||.+++-+.. .|..-|.++++-| ...|-..+|. +..=+||.- |+++.+++--..- .
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rna-e~~e~p~l~~l~a---A~AA~qrgd~-~~an~yL~e---aae~~~~~~l~v~lt 158 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNA-EHGEQPVLAYLLA---AEAAQQRGDE-DRANRYLAE---AAELAGDDTLAVELT 158 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhh-hcCcchHHHHHHH---HHHHHhcccH-HHHHHHHHH---HhccCCCchHHHHHH
Confidence 3445566666999999999998865 4433445544433 3556666777 777788655 8888666542222 5
Q ss_pred HHHHHHHHHhhhchhHHHHHHHHHHHhcc
Q 037237 131 HAALLYKLAEINDKEWDVVIEACERMLKI 159 (1267)
Q Consensus 131 ~A~lL~~la~~~~~~Y~~a~~ec~RaL~i 159 (1267)
.|+++..-+ .|..|.......+.+
T Consensus 159 rarlll~~~-----d~~aA~~~v~~ll~~ 182 (400)
T COG3071 159 RARLLLNRR-----DYPAARENVDQLLEM 182 (400)
T ss_pred HHHHHHhCC-----CchhHHHHHHHHHHh
Confidence 667765533 488888888887777
No 194
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=28.50 E-value=1.8e+02 Score=34.15 Aligned_cols=109 Identities=13% Similarity=0.032 Sum_probs=72.9
Q ss_pred hhHHHHHHHHHhHhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchhh
Q 037237 47 PEINNEGLRALSAFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLVE 126 (1267)
Q Consensus 47 ~~i~~e~~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~~ 126 (1267)
+.++.+-..|.-.- .-++.+....++.-+..||+.+-=.-+=|.+++.+.+-. +. +.++++|..|.|+.++
T Consensus 121 ~~~r~~~~~a~~~~-~~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~-~A-------~~AY~~A~rL~g~n~~ 191 (287)
T COG4235 121 PADRLADPLAQPPA-EQEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRAS-DA-------LLAYRNALRLAGDNPE 191 (287)
T ss_pred cchhhhcccccCCC-cccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchh-HH-------HHHHHHHHHhCCCCHH
Confidence 44444444443222 334566666778888888888777777788888876542 44 8889999999999999
Q ss_pred hHHHHHHHHHHHHhhhchhHHHHHHHHHHHhccCCCCCccc
Q 037237 127 LSFLHAALLYKLAEINDKEWDVVIEACERMLKIGDPYDTLL 167 (1267)
Q Consensus 127 ~a~f~A~lL~~la~~~~~~Y~~a~~ec~RaL~i~~P~dp~~ 167 (1267)
+...+|..||--+.. .-=.++-.--++||.. +|+|+..
T Consensus 192 ~~~g~aeaL~~~a~~--~~ta~a~~ll~~al~~-D~~~ira 229 (287)
T COG4235 192 ILLGLAEALYYQAGQ--QMTAKARALLRQALAL-DPANIRA 229 (287)
T ss_pred HHHHHHHHHHHhcCC--cccHHHHHHHHHHHhc-CCccHHH
Confidence 999999999988864 2223333333444444 5665444
No 195
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=28.13 E-value=2.8e+02 Score=37.51 Aligned_cols=103 Identities=17% Similarity=0.201 Sum_probs=68.1
Q ss_pred HHHHhHh-hcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchh---hhHH
Q 037237 54 LRALSAF-QSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLV---ELSF 129 (1267)
Q Consensus 54 ~~a~~~~-~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~---~~a~ 129 (1267)
.+-..+. +.|++.+|+.++++.+..+|++..++...|.++++.- .+.|. . |. ++...++..- .+.+
T Consensus 35 ~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~-~~~~~-~-----lv---~~l~~~~~~~~~~~ve~ 104 (906)
T PRK14720 35 DDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRR-PLNDS-N-----LL---NLIDSFSQNLKWAIVEH 104 (906)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhc-chhhh-h-----hh---hhhhhcccccchhHHHH
Confidence 3444455 7899999999999999999999999999999665543 34443 0 11 3444444433 2222
Q ss_pred HHH---------HHHHHHHhhhch--hHHHHHHHHHHHhccCCCCCccc
Q 037237 130 LHA---------ALLYKLAEINDK--EWDVVIEACERMLKIGDPYDTLL 167 (1267)
Q Consensus 130 f~A---------~lL~~la~~~~~--~Y~~a~~ec~RaL~i~~P~dp~~ 167 (1267)
+|. .+||.||.-..+ .++++.+.-+|+|.+. |.+|.-
T Consensus 105 ~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~a 152 (906)
T PRK14720 105 ICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEI 152 (906)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHH
Confidence 222 355666654422 6899999999999995 666544
No 196
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=28.10 E-value=4.2e+02 Score=35.54 Aligned_cols=132 Identities=14% Similarity=0.057 Sum_probs=81.0
Q ss_pred HHHhHhhcCCHHHHHHHHHHHHhhCC-CCchhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchhhhHHHHHH
Q 037237 55 RALSAFQSGDSKKALEMIKESISSHQ-DSPHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLVELSFLHAA 133 (1267)
Q Consensus 55 ~a~~~~~~Gnh~kAL~~~kd~~~~h~-~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~~~a~f~A~ 133 (1267)
-|-.+...|++..||+.+-.++.+-+ +.+++...+|.++..+.+-- -. ++.+.+++.+.|+.+..=--.|.
T Consensus 420 ~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e-~A-------~e~y~kvl~~~p~~~D~Ri~Las 491 (895)
T KOG2076|consen 420 LADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE-EA-------IEFYEKVLILAPDNLDARITLAS 491 (895)
T ss_pred HHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH-HH-------HHHHHHHHhcCCCchhhhhhHHH
Confidence 34445678999999999999985543 34566666666665554221 11 66678899999999988888899
Q ss_pred HHHHHHhhhchhHHHHHHHHHHHhccCCCCCcccCCCcccccccchhhhhhhccCChhhhHHHHHHHHHHHHHHhhhhhh
Q 037237 134 LLYKLAEINDKEWDVVIEACERMLKIGDPYDTLLGSNLVDMFTGSLLEKEKVGMSNRESKIESMKQQIMKCLQDSRSQKN 213 (1267)
Q Consensus 134 lL~~la~~~~~~Y~~a~~ec~RaL~i~~P~dp~~~~~~~d~~~~~l~~~~~~~~~~~~~ri~~~k~~L~~li~~a~~~~~ 213 (1267)
++..+|++ ++|+..- ++|.+|.. ... ......|+.||.--+..+..-+.+.+.=+|
T Consensus 492 l~~~~g~~-----EkalEtL------~~~~~~D~---------~~~----e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~ 547 (895)
T KOG2076|consen 492 LYQQLGNH-----EKALETL------EQIINPDG---------RNA----EACAWEPERRILAHRCDILFQVGKREEFIN 547 (895)
T ss_pred HHHhcCCH-----HHHHHHH------hcccCCCc---------cch----hhccccHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 99999987 5444433 22333332 111 122334677776555555444444444444
Q ss_pred hhhhh
Q 037237 214 RKLTA 218 (1267)
Q Consensus 214 ~~~~~ 218 (1267)
..++.
T Consensus 548 t~~~L 552 (895)
T KOG2076|consen 548 TASTL 552 (895)
T ss_pred HHHHH
Confidence 33333
No 197
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=27.96 E-value=2.1e+02 Score=38.20 Aligned_cols=96 Identities=17% Similarity=0.089 Sum_probs=68.9
Q ss_pred HHHHhHhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchhhhHHHHHH
Q 037237 54 LRALSAFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLVELSFLHAA 133 (1267)
Q Consensus 54 ~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~~~a~f~A~ 133 (1267)
.-..+.+.+||..|||.-...+..+||++.-+-.+.|.+++++.+.-++. .-|++ -.++.+++-..-.+.-.
T Consensus 14 rpi~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~-----~~Le~---~~~~~~~D~~tLq~l~~ 85 (932)
T KOG2053|consen 14 RPIYDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEAL-----KLLEA---LYGLKGTDDLTLQFLQN 85 (932)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHH-----HHHhh---hccCCCCchHHHHHHHH
Confidence 34678889999999999999999999999999999999999998663332 22444 33444555443344444
Q ss_pred HHHHHHhhhchhHHHHHHHHHHHhccCCCC
Q 037237 134 LLYKLAEINDKEWDVVIEACERMLKIGDPY 163 (1267)
Q Consensus 134 lL~~la~~~~~~Y~~a~~ec~RaL~i~~P~ 163 (1267)
-+-.+++ |++|+.-=+||... +|.
T Consensus 86 ~y~d~~~-----~d~~~~~Ye~~~~~-~P~ 109 (932)
T KOG2053|consen 86 VYRDLGK-----LDEAVHLYERANQK-YPS 109 (932)
T ss_pred HHHHHhh-----hhHHHHHHHHHHhh-CCc
Confidence 4456554 68888888888776 344
No 198
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function. The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.
Probab=27.70 E-value=28 Score=36.51 Aligned_cols=13 Identities=23% Similarity=0.317 Sum_probs=11.3
Q ss_pred eeeecCccccccC
Q 037237 328 KFSECFVCVEKIG 340 (1267)
Q Consensus 328 rfW~C~~C~~kF~ 340 (1267)
.||.||.|++.|=
T Consensus 123 ~f~~C~~C~kiyW 135 (147)
T PF01927_consen 123 EFWRCPGCGKIYW 135 (147)
T ss_pred eEEECCCCCCEec
Confidence 4999999999874
No 199
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=26.59 E-value=2.1e+02 Score=33.40 Aligned_cols=101 Identities=18% Similarity=0.111 Sum_probs=64.2
Q ss_pred HHHhHhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchhhhHHHHHHH
Q 037237 55 RALSAFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLVELSFLHAAL 134 (1267)
Q Consensus 55 ~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~~~a~f~A~l 134 (1267)
.+.-+++-|+..-|.+.++.+..-.+++.+.+..++.|-+..+. +..-+.-.. .+- -.+.+|.++.+....|..
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~--e~~~~A~y~-f~E---l~~~~~~t~~~lng~A~~ 210 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGG--EKYQDAFYI-FEE---LSDKFGSTPKLLNGLAVC 210 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTT--TCCCHHHHH-HHH---HHCCS--SHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCc--hhHHHHHHH-HHH---HHhccCCCHHHHHHHHHH
Confidence 44555666677777777777765557888888888886665553 332011111 232 355688888887788888
Q ss_pred HHHHHhhhchhHHHHHHHHHHHhccCCCCCccc
Q 037237 135 LYKLAEINDKEWDVVIEACERMLKIGDPYDTLL 167 (1267)
Q Consensus 135 L~~la~~~~~~Y~~a~~ec~RaL~i~~P~dp~~ 167 (1267)
...+++ |++|..-...||.. +|.||..
T Consensus 211 ~l~~~~-----~~eAe~~L~~al~~-~~~~~d~ 237 (290)
T PF04733_consen 211 HLQLGH-----YEEAEELLEEALEK-DPNDPDT 237 (290)
T ss_dssp HHHCT------HHHHHHHHHHHCCC--CCHHHH
T ss_pred HHHhCC-----HHHHHHHHHHHHHh-ccCCHHH
Confidence 777775 89999999999975 5666543
No 200
>PHA00732 hypothetical protein
Probab=26.34 E-value=41 Score=31.99 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=21.5
Q ss_pred ecCccccccCChHHHHHHhHhhhc
Q 037237 331 ECFVCVEKIGNPQLCEKHFRSSHW 354 (1267)
Q Consensus 331 ~C~~C~~kF~d~~~~~~H~~~eH~ 354 (1267)
.|..|++.|.+...++.|+...|.
T Consensus 3 ~C~~Cgk~F~s~s~Lk~H~r~~H~ 26 (79)
T PHA00732 3 KCPICGFTTVTLFALKQHARRNHT 26 (79)
T ss_pred cCCCCCCccCCHHHHHHHhhcccC
Confidence 599999999999999999986565
No 201
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=26.33 E-value=32 Score=31.74 Aligned_cols=43 Identities=26% Similarity=0.397 Sum_probs=34.9
Q ss_pred HHHhHhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHH
Q 037237 55 RALSAFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAE 98 (1267)
Q Consensus 55 ~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~ 98 (1267)
.|.-.|+.|++.+|+.+++. ....+..+..|.+-|..++++.+
T Consensus 31 la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~ 73 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGK 73 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCC
Confidence 58899999999999999988 54446667788888998888754
No 202
>PF12907 zf-met2: Zinc-binding
Probab=25.72 E-value=17 Score=30.38 Aligned_cols=26 Identities=19% Similarity=0.359 Sum_probs=21.6
Q ss_pred ecCccccccC---ChHHHHHHhHhhhccc
Q 037237 331 ECFVCVEKIG---NPQLCEKHFRSSHWNH 356 (1267)
Q Consensus 331 ~C~~C~~kF~---d~~~~~~H~~~eH~~~ 356 (1267)
+|.+|-+.|. +...|..|.+.+|...
T Consensus 3 ~C~iC~qtF~~t~~~~~L~eH~enKHpK~ 31 (40)
T PF12907_consen 3 ICKICRQTFMQTTNEPQLKEHAENKHPKN 31 (40)
T ss_pred CcHHhhHHHHhcCCHHHHHHHHHccCCCC
Confidence 6999997776 5567999999999874
No 203
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=25.44 E-value=1.6e+02 Score=34.11 Aligned_cols=76 Identities=14% Similarity=0.121 Sum_probs=56.3
Q ss_pred HHHHHHHHHhHhhcCCHHHHHHHHHHHHhhCC---CCchhhhhhhHHHHHHH-HHhCCCcchhhhhhhhhhhhhccCCch
Q 037237 49 INNEGLRALSAFQSGDSKKALEMIKESISSHQ---DSPHLHCLEAFIHHSLA-EKAGKGTDTQLEHLTTAASAVGRFPNL 124 (1267)
Q Consensus 49 i~~e~~~a~~~~~~Gnh~kAL~~~kd~~~~h~---~s~~~h~~qg~v~~~lA-~~~~~~~~~k~~~l~~~~~Av~l~p~s 124 (1267)
=++.++-|...++.|++..|+..+++.+..|| +..-+.++.|...+... ...-|+..++.. +.++..-+..||||
T Consensus 71 ~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A-~~~f~~~i~ryPnS 149 (254)
T COG4105 71 EQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAA-FAAFKELVQRYPNS 149 (254)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHH-HHHHHHHHHHCCCC
Confidence 45678889999999999999999999999996 45677888888866543 222333122222 56677789999999
Q ss_pred h
Q 037237 125 V 125 (1267)
Q Consensus 125 ~ 125 (1267)
-
T Consensus 150 ~ 150 (254)
T COG4105 150 R 150 (254)
T ss_pred c
Confidence 6
No 204
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=25.28 E-value=1.6e+02 Score=35.28 Aligned_cols=68 Identities=12% Similarity=0.147 Sum_probs=56.0
Q ss_pred HHHHHHHHhHhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchh
Q 037237 50 NNEGLRALSAFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLV 125 (1267)
Q Consensus 50 ~~e~~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~ 125 (1267)
-=+||=|..+..+.|+.+|+..++......|.|.++-..-|.|+.....- + .-+++..+..+-.|+-+
T Consensus 181 qfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y---~-----~AV~~~e~v~eQn~~yl 248 (389)
T COG2956 181 QFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDY---Q-----KAVEALERVLEQNPEYL 248 (389)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccch---H-----HHHHHHHHHHHhChHHH
Confidence 35899999999999999999999999999999999999999998765411 0 11666677888888766
No 205
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=25.20 E-value=1.1e+02 Score=41.13 Aligned_cols=117 Identities=15% Similarity=0.069 Sum_probs=79.4
Q ss_pred HHHHHHHHHhHhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchhhhH
Q 037237 49 INNEGLRALSAFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLVELS 128 (1267)
Q Consensus 49 i~~e~~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~~~a 128 (1267)
|+.-.-.|.++++..||..||++-|.+..-.|+...+|..-|--...+.. |+.-.+-.|+ .|+.+.|+.+--.
T Consensus 2 vK~aLK~Ak~al~nk~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q---~le~A~ehYv----~AaKldpdnlLAW 74 (1238)
T KOG1127|consen 2 VKTALKSAKDALRNKEYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQ---DLEKAAEHYV----LAAKLDPDNLLAW 74 (1238)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccC---CHHHHHHHHH----HHHhcChhhhHHH
Confidence 56667789999999999999999999998889998888877765555432 2212233344 4689999998544
Q ss_pred HHHHHHHHHHHhhhchhHHHHHHHHHHHhccCCCCCcccCCCcccc
Q 037237 129 FLHAALLYKLAEINDKEWDVVIEACERMLKIGDPYDTLLGSNLVDM 174 (1267)
Q Consensus 129 ~f~A~lL~~la~~~~~~Y~~a~~ec~RaL~i~~P~dp~~~~~~~d~ 174 (1267)
-..+++ |+--.+ -..|+++-.-|.|++-+..-++.-.|..+.++
T Consensus 75 kGL~nL-ye~~~d-Il~ld~~~~~yq~~~l~le~q~~nk~~~lcKk 118 (1238)
T KOG1127|consen 75 KGLGNL-YERYND-ILDLDRAAKCYQRAVLILENQSKNKGEALCKK 118 (1238)
T ss_pred HHHHHH-HHccch-hhhhhHhHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 455544 443333 23588888889998888544443343344433
No 206
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=24.51 E-value=21 Score=30.99 Aligned_cols=19 Identities=16% Similarity=0.343 Sum_probs=7.8
Q ss_pred HHHHHHHhcCceeeeecCcccc
Q 037237 316 EALSFAEEHKTWKFSECFVCVE 337 (1267)
Q Consensus 316 ~al~fak~~~~WrfW~C~~C~~ 337 (1267)
.-|++.+.++. |.||+|++
T Consensus 31 ~fl~~~~~~~~---W~CPiC~~ 49 (50)
T PF02891_consen 31 SFLESNQRTPK---WKCPICNK 49 (50)
T ss_dssp HHHHHHHHS------B-TTT--
T ss_pred HHHHHhhccCC---eECcCCcC
Confidence 33444444444 89999975
No 207
>PRK09591 celC cellobiose phosphotransferase system IIA component; Reviewed
Probab=24.49 E-value=2.5e+02 Score=28.19 Aligned_cols=58 Identities=16% Similarity=0.165 Sum_probs=45.5
Q ss_pred HHHHHHHHhHhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHhCCCcchhhhh
Q 037237 50 NNEGLRALSAFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEKAGKGTDTQLEH 110 (1267)
Q Consensus 50 ~~e~~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~ 110 (1267)
|+.+-.|+++.+.||+.+|-+.|++.- ..-.-+|..|..+.-+-|.+-..+.++=+.|
T Consensus 21 rs~~~eAl~~ak~gdf~~A~~~l~eA~---~~l~~AH~~qt~liq~Ea~g~~~~~slLlvH 78 (104)
T PRK09591 21 RTEVHEAFAAMREGNFDLAEQKLNQSN---EELLEAHHAQTKLLQEYASGTEIKIEIIMVH 78 (104)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhCCCCCccceeehh
Confidence 678899999999999999999999885 3346789999999888887654443444444
No 208
>PHA02998 RNA polymerase subunit; Provisional
Probab=24.48 E-value=93 Score=34.04 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=14.5
Q ss_pred eeeeEeE-eEEecCCCCCcccc
Q 037237 1084 IFGMDHY-EKVNCVKCSAKFGY 1104 (1267)
Q Consensus 1084 LFGg~Lr-SqV~C~~Cg~~S~t 1104 (1267)
.|-..-. ..+.|+.||+...+
T Consensus 134 yfnvlpkkt~v~CPkCg~~~A~ 155 (195)
T PHA02998 134 YFNVLDEKYNTPCPNCKSKNTT 155 (195)
T ss_pred heeccCcccCCCCCCCCCCceE
Confidence 4544433 67899999988654
No 209
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=24.46 E-value=82 Score=40.09 Aligned_cols=38 Identities=26% Similarity=0.373 Sum_probs=33.5
Q ss_pred CchhHHHHHHHHHhHhhc-CCHHHHHHHHHHHHhhC-CCC
Q 037237 45 SDPEINNEGLRALSAFQS-GDSKKALEMIKESISSH-QDS 82 (1267)
Q Consensus 45 ~~~~i~~e~~~a~~~~~~-Gnh~kAL~~~kd~~~~h-~~s 82 (1267)
..+.|.....+|..+|++ |+|.+||+++-..+.+- ||+
T Consensus 511 ~~~~v~~al~~Ae~~F~~~~~Y~~ALe~i~~alE~vePG~ 550 (560)
T PF06160_consen 511 DNPEVDEALTEAEDLFRNEYDYEKALETIATALEKVEPGA 550 (560)
T ss_pred CCHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCH
Confidence 448999999999999999 99999999999998554 665
No 210
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=24.10 E-value=58 Score=34.17 Aligned_cols=13 Identities=31% Similarity=1.004 Sum_probs=9.9
Q ss_pred cCCcccCCcCCCc
Q 037237 1140 LNGLLNCGACGQI 1152 (1267)
Q Consensus 1140 ~~~~~~C~~Cgk~ 1152 (1267)
++..+.|+.||..
T Consensus 120 ~~~~f~Cp~Cg~~ 132 (147)
T smart00531 120 MDGTFTCPRCGEE 132 (147)
T ss_pred CCCcEECCCCCCE
Confidence 3445899999976
No 211
>PF02255 PTS_IIA: PTS system, Lactose/Cellobiose specific IIA subunit; InterPro: IPR003188 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilised by a centrally located metal ion []. Separation into subunits is thought to occur after phosphorylation.; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3L8R_D 2E2A_B 1E2A_C 3K1S_C 2LRK_C 2LRL_A 2WY2_A 1WCR_A 2WWV_C.
Probab=23.90 E-value=3.2e+02 Score=26.96 Aligned_cols=58 Identities=22% Similarity=0.239 Sum_probs=43.9
Q ss_pred HHHHHHHHhHhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHhCCCcchhhhh
Q 037237 50 NNEGLRALSAFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEKAGKGTDTQLEH 110 (1267)
Q Consensus 50 ~~e~~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~ 110 (1267)
|+.+-.|++..+.||+.+|-+.|++.- ..-.-+|..|-.+.-+-|.....+.++=+.|
T Consensus 15 rs~~~eAl~~a~~~~fe~A~~~l~~a~---~~l~~AH~~qt~llq~ea~g~~~~~slLlvH 72 (96)
T PF02255_consen 15 RSLAMEALKAAREGDFEEAEELLKEAD---EELLKAHKIQTELLQQEANGEKVEISLLLVH 72 (96)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHTTSSSSS-HHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhccCCCCcchhhhh
Confidence 678899999999999999999999875 3346789999999888887754443444444
No 212
>KOG3891 consensus Secretory vesicle-associated protein ICA69, contains Arfaptin domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.41 E-value=2.3e+02 Score=34.04 Aligned_cols=114 Identities=16% Similarity=0.102 Sum_probs=75.2
Q ss_pred HHHHHHHHHHhhhchhHHHHHHHHHHHhccCCCCCcccCCCcccccccchhhhhhhccCChhhhHHHHHHHHHHHHHHhh
Q 037237 130 LHAALLYKLAEINDKEWDVVIEACERMLKIGDPYDTLLGSNLVDMFTGSLLEKEKVGMSNRESKIESMKQQIMKCLQDSR 209 (1267)
Q Consensus 130 f~A~lL~~la~~~~~~Y~~a~~ec~RaL~i~~P~dp~~~~~~~d~~~~~l~~~~~~~~~~~~~ri~~~k~~L~~li~~a~ 209 (1267)
|.++-...+..-|.++|.++..=-.||++=. .. ---|+++.+.|+|+-+
T Consensus 118 fssqqrla~r~pl~r~~~ev~vF~~RAI~Dt-----~q----------------------Ti~~meq~RTEYRgaL---- 166 (436)
T KOG3891|consen 118 FSSQQRLALRIPLSRFYQEVSVFRERAISDT-----SQ----------------------TINRMEQCRTEYRGAL---- 166 (436)
T ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHhhhH-----HH----------------------HHHHHHHHHHHHHHHH----
Confidence 3344444444444668888887777876531 00 2256888999998644
Q ss_pred hhhhhhhhhhhccCccchhhHHHhhhhhHHHHHHHHHHHHHHHHhhhhcccccccchhhHHHHHHHhhhccCCChhhhcc
Q 037237 210 SQKNRKLTAMKADGEEVEDDVIKKDLMGVEMRKKQVEEIIKDLEQQKTYYSTEKYEQNVEKVEKYVSFWSSGLNSDKKRG 289 (1267)
Q Consensus 210 ~~~~~~~~~~k~~g~e~~~~~~k~~~k~~e~r~~eie~~~~rll~~~~~~~~~k~~~~~~~~~~~r~yW~~~ls~e~kr~ 289 (1267)
-|||....|..|.. .|.+|.+|+-- ....+...++++++ |++=+|-+
T Consensus 167 -------lWMK~~SqELDPdt----~k~meKFRkaQ----------------t~Vr~aK~nfDklk------mD~~QKVD 213 (436)
T KOG3891|consen 167 -------LWMKDVSQELDPDT----DKQMEKFRKAQ----------------TQVRSAKENFDKLK------MDVCQKVD 213 (436)
T ss_pred -------HHHHhhHhhcCcch----hhHHHHHHHHH----------------HHHHHHHhccchhh------hHHHHHHh
Confidence 79999888776654 45577777621 12223344566643 88889999
Q ss_pred ceeeehHHHHHHHHhhcc
Q 037237 290 FLKVNKEELKKYVKSLKN 307 (1267)
Q Consensus 290 FL~V~i~eLksy~~~~~~ 307 (1267)
+|-.+=..|-||.-..|.
T Consensus 214 LL~AsRcNllSh~Lt~Yq 231 (436)
T KOG3891|consen 214 LLGASRCNLLSHVLTTYQ 231 (436)
T ss_pred HhhHhhhhHHHHHHHHHH
Confidence 999999999988877664
No 213
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=23.35 E-value=1.1e+02 Score=35.75 Aligned_cols=75 Identities=17% Similarity=0.196 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHhC-----CCcchhhh----h------hhhhhhhhccCCchhhhHHHH
Q 037237 67 KALEMIKESISSHQDSPHLHCLEAFIHHSLAEKAG-----KGTDTQLE----H------LTTAASAVGRFPNLVELSFLH 131 (1267)
Q Consensus 67 kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~-----~~~~~k~~----~------l~~~~~Av~l~p~s~~~a~f~ 131 (1267)
.-+..||++++..|.|.++|.+.|..++..|-.+- +. ...-. + +..+.+|..|.|+.+. .
T Consensus 61 ~~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~-V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~----A 135 (277)
T PF13226_consen 61 ARLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYAST-VTEAQWLGAHQACDQAVAALLKAIELSPRPVA----A 135 (277)
T ss_pred hHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcc-cCHHHHHHHHHHHHHHHHHHHHHHhcCCCchH----H
Confidence 35678999999999999999999999999884332 21 11111 1 5568889999999874 3
Q ss_pred HHHHHHHHhhhch-hH
Q 037237 132 AALLYKLAEINDK-EW 146 (1267)
Q Consensus 132 A~lL~~la~~~~~-~Y 146 (1267)
+..|+.++.++|. +|
T Consensus 136 ~~~m~~~s~~fgeP~W 151 (277)
T PF13226_consen 136 AIGMINISAYFGEPDW 151 (277)
T ss_pred HHHHHHHHhhcCCchH
Confidence 4556677777666 44
No 214
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=23.17 E-value=1.4e+02 Score=22.28 Aligned_cols=28 Identities=14% Similarity=0.323 Sum_probs=23.3
Q ss_pred HHHHhHhhcCCHHHHHHHHHHHHhhCCC
Q 037237 54 LRALSAFQSGDSKKALEMIKESISSHQD 81 (1267)
Q Consensus 54 ~~a~~~~~~Gnh~kAL~~~kd~~~~h~~ 81 (1267)
..+.-.+..|++.+|++.++..+...|+
T Consensus 6 ~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 6 YLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4677889999999999999999987764
No 215
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=22.66 E-value=2.7e+02 Score=36.51 Aligned_cols=93 Identities=12% Similarity=0.031 Sum_probs=67.9
Q ss_pred hhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchhhhHHHHHHHHHHHH
Q 037237 60 FQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLVELSFLHAALLYKLA 139 (1267)
Q Consensus 60 ~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~~~a~f~A~lL~~la 139 (1267)
++++|+.+|.+..+++..-+|...-..+--|+...++-..- .. +.+..++|.+.|+.-+-.--.|.+++.++
T Consensus 496 ~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q-~a-------v~aF~rcvtL~Pd~~eaWnNls~ayi~~~ 567 (777)
T KOG1128|consen 496 LSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQ-AA-------VKAFHRCVTLEPDNAEAWNNLSTAYIRLK 567 (777)
T ss_pred ccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhH-HH-------HHHHHHHhhcCCCchhhhhhhhHHHHHHh
Confidence 45588888888888888777777777777777766665331 11 56677899999999998888888888888
Q ss_pred hhhchhHHHHHHHHHHHhccCCCCCccc
Q 037237 140 EINDKEWDVVIEACERMLKIGDPYDTLL 167 (1267)
Q Consensus 140 ~~~~~~Y~~a~~ec~RaL~i~~P~dp~~ 167 (1267)
+. +++-..=++||+-. +++..
T Consensus 568 ~k-----~ra~~~l~EAlKcn--~~~w~ 588 (777)
T KOG1128|consen 568 KK-----KRAFRKLKEALKCN--YQHWQ 588 (777)
T ss_pred hh-----HHHHHHHHHHhhcC--CCCCe
Confidence 75 66666667778774 54443
No 216
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=22.13 E-value=3e+02 Score=35.61 Aligned_cols=107 Identities=19% Similarity=0.226 Sum_probs=65.2
Q ss_pred CCchhHHHHHHHHHhHhhc-----CCH-----------------HHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHhC
Q 037237 44 SSDPEINNEGLRALSAFQS-----GDS-----------------KKALEMIKESISSHQDSPHLHCLEAFIHHSLAEKAG 101 (1267)
Q Consensus 44 ~~~~~i~~e~~~a~~~~~~-----Gnh-----------------~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~ 101 (1267)
|-+...+.|-+.|.++||. ++| .-|+-.++..+..+|.+-.+.+-=|.+..++.+. |
T Consensus 462 GhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~-d 540 (638)
T KOG1126|consen 462 GHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRK-D 540 (638)
T ss_pred CChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhh-h
Confidence 4556778889999988852 222 2222233333333443333333333333333221 1
Q ss_pred CCcchhhhhhhhhhhhhccCCchhhhHHHHHHHHHHHHhhhchhHHHHHHHHHHHhccCCCCC
Q 037237 102 KGTDTQLEHLTTAASAVGRFPNLVELSFLHAALLYKLAEINDKEWDVVIEACERMLKIGDPYD 164 (1267)
Q Consensus 102 ~~~~~k~~~l~~~~~Av~l~p~s~~~a~f~A~lL~~la~~~~~~Y~~a~~ec~RaL~i~~P~d 164 (1267)
.. |+-+.+|+-+.|.++--=.-+|++||.++. |++|..+-+. |+...|++
T Consensus 541 ~A-------L~~~~~A~~ld~kn~l~~~~~~~il~~~~~-----~~eal~~LEe-Lk~~vP~e 590 (638)
T KOG1126|consen 541 KA-------LQLYEKAIHLDPKNPLCKYHRASILFSLGR-----YVEALQELEE-LKELVPQE 590 (638)
T ss_pred HH-------HHHHHHHHhcCCCCchhHHHHHHHHHhhcc-----hHHHHHHHHH-HHHhCcch
Confidence 11 777888999999999777778999999986 7999888765 55555654
No 217
>PF10932 DUF2783: Protein of unknown function (DUF2783); InterPro: IPR021233 This is a bacterial family of uncharacterised protein.
Probab=22.11 E-value=1e+02 Score=28.12 Aligned_cols=33 Identities=24% Similarity=0.112 Sum_probs=26.5
Q ss_pred hhhhHHHHHHHHHHHHhhhch--hHHHHHHHHHHH
Q 037237 124 LVELSFLHAALLYKLAEINDK--EWDVVIEACERM 156 (1267)
Q Consensus 124 s~~~a~f~A~lL~~la~~~~~--~Y~~a~~ec~Ra 156 (1267)
.-....+.|+|...||+|||. -.++|++.+++|
T Consensus 26 ~e~S~~lnArLiLlLANhIGD~~vL~eAi~~Ar~~ 60 (60)
T PF10932_consen 26 DEQSAALNARLILLLANHIGDRAVLREAIAAARRG 60 (60)
T ss_pred HHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHhcC
Confidence 457888999999999999988 667777766553
No 218
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=21.95 E-value=1.3e+03 Score=28.24 Aligned_cols=20 Identities=25% Similarity=0.375 Sum_probs=12.4
Q ss_pred hHHHHHHHHHhHh-hcCCHHH
Q 037237 48 EINNEGLRALSAF-QSGDSKK 67 (1267)
Q Consensus 48 ~i~~e~~~a~~~~-~~Gnh~k 67 (1267)
.=..+|.+|+++. ..|...+
T Consensus 59 ~~~~~~LqslK~da~E~ep~E 79 (390)
T KOG0551|consen 59 NPDNVCLQSLKADAEEGEPHE 79 (390)
T ss_pred CccHHHHHHhhhccccCChHH
Confidence 3456777777777 4555444
No 219
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=21.87 E-value=1.4e+02 Score=35.87 Aligned_cols=81 Identities=19% Similarity=0.224 Sum_probs=57.9
Q ss_pred cCCCchhHHHHH--------HHHHhHhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHhCCCcchhhhhhhh
Q 037237 42 INSSDPEINNEG--------LRALSAFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEKAGKGTDTQLEHLTT 113 (1267)
Q Consensus 42 ~~~~~~~i~~e~--------~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~ 113 (1267)
.+.+.+.|+.|- -+|..++-.|+..+|++..-..|..+|.++.+|--.|.||++|-+- +. --+ -
T Consensus 99 MGds~~e~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp--~~---air---D 170 (377)
T KOG1308|consen 99 MGDSNAEITEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKP--NA---AIR---D 170 (377)
T ss_pred hchhhhhhhHHHHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCC--ch---hhh---h
Confidence 344446665543 3577889999999999999999999999999999999999988632 11 111 1
Q ss_pred hhhhhccCCchhhhHHH
Q 037237 114 AASAVGRFPNLVELSFL 130 (1267)
Q Consensus 114 ~~~Av~l~p~s~~~a~f 130 (1267)
+..|.++.|++-.-+.|
T Consensus 171 ~d~A~ein~Dsa~~ykf 187 (377)
T KOG1308|consen 171 CDFAIEINPDSAKGYKF 187 (377)
T ss_pred hhhhhccCcccccccch
Confidence 23377788887755444
No 220
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=21.51 E-value=3e+02 Score=35.65 Aligned_cols=95 Identities=20% Similarity=0.233 Sum_probs=66.4
Q ss_pred HHHHHhHhhcCCHHHHHHHHHHHHhhCCCCchhhhhhhHHHHHHHHHhCCCcchhhhhhhhhhhhhccCCchhhhHHHHH
Q 037237 53 GLRALSAFQSGDSKKALEMIKESISSHQDSPHLHCLEAFIHHSLAEKAGKGTDTQLEHLTTAASAVGRFPNLVELSFLHA 132 (1267)
Q Consensus 53 ~~~a~~~~~~Gnh~kAL~~~kd~~~~h~~s~~~h~~qg~v~~~lA~~~~~~~~~k~~~l~~~~~Av~l~p~s~~~a~f~A 132 (1267)
-.||++++.-+.+.|.|+.++-+..++|.-+--.-.-|-....+.++.+. .+=.++++.-.|.|-+= .|+
T Consensus 11 F~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea--------~~~vr~glr~d~~S~vC--wHv 80 (700)
T KOG1156|consen 11 FRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEA--------YELVRLGLRNDLKSHVC--WHV 80 (700)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHH--------HHHHHHHhccCcccchh--HHH
Confidence 46899999999999999999999999976555556677777777755432 12234455555554432 333
Q ss_pred HHHHHHHhhhchhHHHHHHHHHHHhccC
Q 037237 133 ALLYKLAEINDKEWDVVIEACERMLKIG 160 (1267)
Q Consensus 133 ~lL~~la~~~~~~Y~~a~~ec~RaL~i~ 160 (1267)
-.|+.=. .+.|++|++-=.+||.++
T Consensus 81 ~gl~~R~---dK~Y~eaiKcy~nAl~~~ 105 (700)
T KOG1156|consen 81 LGLLQRS---DKKYDEAIKCYRNALKIE 105 (700)
T ss_pred HHHHHhh---hhhHHHHHHHHHHHHhcC
Confidence 3333322 578999999889999994
No 221
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=21.35 E-value=65 Score=41.70 Aligned_cols=92 Identities=17% Similarity=0.168 Sum_probs=62.2
Q ss_pred CChhhhccceeeehHHHHHHHHhhcc-------chHHHHHHHHHHHHHhcCceeeeecCccccccC----ChHHHHHHhH
Q 037237 282 LNSDKKRGFLKVNKEELKKYVKSLKN-------DFVEKIFSEALSFAEEHKTWKFSECFVCVEKIG----NPQLCEKHFR 350 (1267)
Q Consensus 282 ls~e~kr~FL~V~i~eLksy~~~~~~-------~~~~~~Ls~al~fak~~~~WrfW~C~~C~~kF~----d~~~~~~H~~ 350 (1267)
++.|..-.++.||+.-=.++-.-.+. +.. .=+|+.|-.-|..=-=|+||+|.+.+. -...+..++.
T Consensus 294 ~d~~i~tt~~~vSL~CPl~~~Rm~~P~r~~~CkHlQ---cFD~~~~lq~n~~~pTW~CPVC~~~~~~e~l~iD~~~~~iL 370 (636)
T KOG2169|consen 294 PDSEIATTSLRVSLNCPLSKMRMSLPARGHTCKHLQ---CFDALSYLQMNEQKPTWRCPVCQKAAPFEGLIIDGYFLNIL 370 (636)
T ss_pred CcccceeccceeEecCCcccceeecCCcccccccce---ecchhhhHHhccCCCeeeCccCCccccccchhhhHHHHHHH
Confidence 67788889999987665555544332 111 124566666677778899999987554 5678888888
Q ss_pred hhhcccCcccccCCCCccccHHHHHhhhcCCccccchhhH
Q 037237 351 SSHWNHLEIMVQPLMPVDFRSEWIEMIVKGVWKPVDTDKG 390 (1267)
Q Consensus 351 ~eH~~~l~p~~~~~~Pq~i~~~w~~~i~~~~WkPvD~~aa 390 (1267)
+.+.++..+ .+ +. ..|+|+|+...++
T Consensus 371 ~~~~~~~~e-v~------~~-------~dGsw~pi~~~~~ 396 (636)
T KOG2169|consen 371 QSCQANVEE-VE------VS-------EDGSWKPIPEEAE 396 (636)
T ss_pred hhccCCCcc-eE------ec-------CCCceecCccccc
Confidence 888776322 11 22 2399999999986
No 222
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=21.15 E-value=37 Score=35.11 Aligned_cols=14 Identities=14% Similarity=-0.002 Sum_probs=12.2
Q ss_pred eecCccccccCChH
Q 037237 330 SECFVCVEKIGNPQ 343 (1267)
Q Consensus 330 W~C~~C~~kF~d~~ 343 (1267)
++||.|+.||++..
T Consensus 10 r~Cp~cg~kFYDLn 23 (129)
T TIGR02300 10 RICPNTGSKFYDLN 23 (129)
T ss_pred ccCCCcCccccccC
Confidence 68999999999865
Done!