BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037238
(410 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OTK|A Chain A, Structure And Mechanisim Of Core 2 Beta1,6-N-
Acetylglucosaminyltransferase: A Metal-Ion Independent
Gt-A Glycosyltransferase
pdb|3OTK|B Chain B, Structure And Mechanisim Of Core 2 Beta1,6-N-
Acetylglucosaminyltransferase: A Metal-Ion Independent
Gt-A Glycosyltransferase
pdb|3OTK|C Chain C, Structure And Mechanisim Of Core 2 Beta1,6-N-
Acetylglucosaminyltransferase: A Metal-Ion Independent
Gt-A Glycosyltransferase
pdb|3OTK|D Chain D, Structure And Mechanisim Of Core 2 Beta1,6-N-
Acetylglucosaminyltransferase: A Metal-Ion Independent
Gt-A Glycosyltransferase
Length = 391
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 88/209 (42%), Gaps = 16/209 (7%)
Query: 76 NMIKRTLLALYHPNNVYVVHLDRASSESERLDLQNFVNGFHLFNKFSNVKMITKANLVTY 135
M+ R L A+Y P N Y +H+DR + ES +Q + F NV + ++ V Y
Sbjct: 97 EMLDRLLRAIYMPQNFYCIHVDRKAEESFLAAVQGIASCF------DNVFVASQLESVVY 150
Query: 136 RGPTMVANTLHAAAVLLREGGDWDWFINLSASDYPLVTQDDLLDAFSYLPRDLNFIDHTS 195
T V L+ L R +W + INLS D+P+ T +++ + N
Sbjct: 151 ASWTRVKADLNCMKDLYRMNANWKYLINLSGMDFPIKTNLEIVRKLKCSTGENNLETEKM 210
Query: 196 NIGWKEFQRAKPIIIDPGLYMSKKADVFWVTQKRSVPSAFKLFTGSAWMALSRSFIDYCI 255
+E + + ++D L + K P LF+GSA+ ++R ++ Y +
Sbjct: 211 PPNKEERWKKRYAVVDGKLTNTG-------IVKAPPPLKTPLFSGSAYFVVTREYVGYVL 263
Query: 256 WGWDNLPRTVLMYYANFLSSPEGYFHTVI 284
+N LM +A SP+ + I
Sbjct: 264 ---ENENIQKLMEWAQDTYSPDEFLWATI 289
>pdb|2GAK|A Chain A, X-ray Crystal Structure Of Murine Leukocyte-type Core 2
B1,6-n- Acetylglucosaminyltransferase (c2gnt-l)
pdb|2GAK|B Chain B, X-ray Crystal Structure Of Murine Leukocyte-type Core 2
B1,6-n- Acetylglucosaminyltransferase (c2gnt-l)
pdb|2GAM|A Chain A, X-Ray Crystal Structure Of Murine Leukocyte-Type Core 2
B1, 6-N-Acetylglucosaminyltransferase (C2gnt-L) In
Complex With Galb1,3galnac
pdb|2GAM|B Chain B, X-Ray Crystal Structure Of Murine Leukocyte-Type Core 2
B1, 6-N-Acetylglucosaminyltransferase (C2gnt-L) In
Complex With Galb1,3galnac
pdb|2GAM|C Chain C, X-Ray Crystal Structure Of Murine Leukocyte-Type Core 2
B1, 6-N-Acetylglucosaminyltransferase (C2gnt-L) In
Complex With Galb1,3galnac
pdb|2GAM|D Chain D, X-Ray Crystal Structure Of Murine Leukocyte-Type Core 2
B1, 6-N-Acetylglucosaminyltransferase (C2gnt-L) In
Complex With Galb1,3galnac
Length = 391
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 87/209 (41%), Gaps = 16/209 (7%)
Query: 76 NMIKRTLLALYHPNNVYVVHLDRASSESERLDLQNFVNGFHLFNKFSNVKMITKANLVTY 135
M+ R L A+Y P N Y +H+DR + ES +Q + F NV + ++ V Y
Sbjct: 97 EMLDRLLRAIYMPQNFYCIHVDRKAEESFLAAVQGIASC------FDNVFVASQLESVVY 150
Query: 136 RGPTMVANTLHAAAVLLREGGDWDWFINLSASDYPLVTQDDLLDAFSYLPRDLNFIDHTS 195
T V L+ L R +W + INL D+P+ T +++ + N
Sbjct: 151 ASWTRVKADLNCMKDLYRMNANWKYLINLCGMDFPIKTNLEIVRKLKCSTGENNLETEKM 210
Query: 196 NIGWKEFQRAKPIIIDPGLYMSKKADVFWVTQKRSVPSAFKLFTGSAWMALSRSFIDYCI 255
+E + + ++D L + K P LF+GSA+ ++R ++ Y +
Sbjct: 211 PPNKEERWKKRYAVVDGKLTNTG-------IVKAPPPLKTPLFSGSAYFVVTREYVGYVL 263
Query: 256 WGWDNLPRTVLMYYANFLSSPEGYFHTVI 284
+N LM +A SP+ + I
Sbjct: 264 ---ENENIQKLMEWAQDTYSPDEFLWATI 289
>pdb|1EYX|B Chain B, Crystal Structure Of R-Phycoerythrin At 2.2 Angstroms
pdb|1EYX|L Chain L, Crystal Structure Of R-Phycoerythrin At 2.2 Angstroms
Length = 177
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 346 SELLSRNPGMVTPGGWCIGSRK 367
S ++ NPG++TPGG C +R+
Sbjct: 57 SGMICENPGLITPGGXCYTNRR 78
>pdb|1LIA|B Chain B, Crystal Structure Of R-Phycoerythrin From Polysiphonia At
2.8 A Resolution
pdb|1LIA|L Chain L, Crystal Structure Of R-Phycoerythrin From Polysiphonia At
2.8 A Resolution
Length = 177
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 346 SELLSRNPGMVTPGGWCIGSRK 367
S ++ NPG++TPGG C +R+
Sbjct: 57 SGMICENPGLITPGGNCYTNRR 78
>pdb|3V57|B Chain B, Crystal Structure Of The B-Phycoerythrin From The Red
Algae Porphyridium Cruentum At Ph8
pdb|3V57|D Chain D, Crystal Structure Of The B-Phycoerythrin From The Red
Algae Porphyridium Cruentum At Ph8
pdb|3V58|B Chain B, Crystal Structure Of The B-Phycoerythrin From The Red
Algae Porphyridium Cruentum At Ph5
pdb|3V58|D Chain D, Crystal Structure Of The B-Phycoerythrin From The Red
Algae Porphyridium Cruentum At Ph5
Length = 177
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 346 SELLSRNPGMVTPGGWCIGSRK 367
S ++ NPG+++PGG C +R+
Sbjct: 57 SGMICENPGLISPGGXCYTNRR 78
>pdb|1B8D|B Chain B, Crystal Structure Of A Phycourobilin-Containing
Phycoerythrin
pdb|1B8D|L Chain L, Crystal Structure Of A Phycourobilin-Containing
Phycoerythrin
Length = 177
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 346 SELLSRNPGMVTPGGWCIGSRK 367
S ++ NPG++ PGG C +R+
Sbjct: 57 SGMICENPGLIAPGGXCYTNRR 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,584,800
Number of Sequences: 62578
Number of extensions: 509657
Number of successful extensions: 1103
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1093
Number of HSP's gapped (non-prelim): 8
length of query: 410
length of database: 14,973,337
effective HSP length: 101
effective length of query: 309
effective length of database: 8,652,959
effective search space: 2673764331
effective search space used: 2673764331
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)