Query 037238
Match_columns 410
No_of_seqs 228 out of 863
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 10:10:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037238.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037238hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03183 acetylglucosaminyltra 100.0 2E-116 5E-121 895.1 25.4 389 17-410 6-421 (421)
2 KOG0799 Branching enzyme [Carb 100.0 5.9E-67 1.3E-71 539.0 15.0 334 57-408 97-439 (439)
3 PF02485 Branch: Core-2/I-Bran 100.0 1.1E-53 2.4E-58 408.4 6.6 238 64-324 1-244 (244)
4 TIGR03469 HonB hopene-associat 95.4 0.53 1.1E-05 48.3 15.5 117 57-181 35-155 (384)
5 PRK11204 N-glycosyltransferase 90.7 6.3 0.00014 40.4 14.3 102 59-180 51-155 (420)
6 TIGR03472 HpnI hopanoid biosyn 87.9 12 0.00027 38.0 13.9 105 61-182 40-149 (373)
7 TIGR03111 glyc2_xrt_Gpos1 puta 87.9 13 0.00027 39.0 14.2 103 59-180 46-152 (439)
8 cd02525 Succinoglycan_BP_ExoA 85.9 7.9 0.00017 35.7 10.3 100 63-182 1-104 (249)
9 PRK14583 hmsR N-glycosyltransf 84.8 28 0.00061 36.3 14.9 100 59-178 72-174 (444)
10 cd06439 CESA_like_1 CESA_like_ 81.8 18 0.00039 33.7 11.1 106 56-183 23-133 (251)
11 PTZ00260 dolichyl-phosphate be 81.8 25 0.00054 35.4 12.6 112 58-182 66-188 (333)
12 PF07521 RMMBL: RNA-metabolisi 80.6 1.1 2.4E-05 31.6 1.7 29 68-98 14-42 (43)
13 PRK05454 glucosyltransferase M 80.3 38 0.00082 37.9 14.4 117 56-182 118-246 (691)
14 PRK14716 bacteriophage N4 adso 77.9 22 0.00047 38.3 11.2 101 60-171 64-172 (504)
15 COG1216 Predicted glycosyltran 77.0 15 0.00032 36.2 9.2 91 61-168 2-94 (305)
16 PF13641 Glyco_tranf_2_3: Glyc 76.5 8.3 0.00018 35.3 6.8 115 62-192 1-120 (228)
17 cd06437 CESA_CaSu_A2 Cellulose 76.5 16 0.00034 33.9 8.7 103 62-179 1-107 (232)
18 PRK07132 DNA polymerase III su 75.7 17 0.00036 36.4 9.1 95 61-166 16-128 (299)
19 cd06421 CESA_CelA_like CESA_Ce 75.0 29 0.00063 31.6 10.0 104 62-183 1-108 (234)
20 TIGR03030 CelA cellulose synth 72.1 53 0.0011 36.8 12.8 108 59-182 128-254 (713)
21 PRK10063 putative glycosyl tra 71.7 45 0.00098 31.9 10.8 93 62-173 1-98 (248)
22 cd02520 Glucosylceramide_synth 71.4 47 0.001 29.9 10.4 104 62-182 1-109 (196)
23 cd04179 DPM_DPG-synthase_like 70.7 32 0.0007 30.0 8.9 97 67-182 2-102 (185)
24 PF00535 Glycos_transf_2: Glyc 67.6 22 0.00047 29.8 6.9 100 67-183 3-105 (169)
25 PRK10073 putative glycosyl tra 66.9 52 0.0011 33.0 10.5 93 61-171 5-99 (328)
26 PRK06871 DNA polymerase III su 66.9 29 0.00063 35.2 8.6 82 78-167 64-146 (325)
27 TIGR01556 rhamnosyltran L-rham 65.5 41 0.00089 32.3 9.2 85 71-171 3-87 (281)
28 PLN02726 dolichyl-phosphate be 63.7 1.1E+02 0.0025 28.5 11.6 107 59-182 6-116 (243)
29 cd06434 GT2_HAS Hyaluronan syn 63.7 68 0.0015 29.3 9.9 98 64-181 2-99 (235)
30 PRK07276 DNA polymerase III su 63.2 41 0.0009 33.5 8.8 57 103-167 87-143 (290)
31 cd04187 DPM1_like_bac Bacteria 62.7 68 0.0015 28.1 9.4 97 67-182 2-103 (181)
32 PF08660 Alg14: Oligosaccharid 62.5 32 0.00069 31.5 7.3 124 67-194 3-130 (170)
33 PRK05917 DNA polymerase III su 61.2 49 0.0011 33.1 8.8 98 61-167 17-134 (290)
34 cd04184 GT2_RfbC_Mx_like Myxoc 61.1 1.2E+02 0.0026 26.8 11.1 93 62-170 1-96 (202)
35 cd02526 GT2_RfbF_like RfbF is 60.7 67 0.0014 29.4 9.3 96 67-181 2-97 (237)
36 COG0848 ExbD Biopolymer transp 59.1 1.3E+02 0.0028 26.6 11.1 52 74-129 80-133 (137)
37 PRK05818 DNA polymerase III su 56.7 53 0.0012 32.3 8.1 35 133-167 93-127 (261)
38 cd04186 GT_2_like_c Subfamily 56.2 86 0.0019 26.3 8.7 92 67-181 2-96 (166)
39 cd06427 CESA_like_2 CESA_like_ 55.9 1.3E+02 0.0028 28.0 10.5 102 62-181 1-106 (241)
40 COG1215 Glycosyltransferases, 55.8 2.3E+02 0.005 28.7 13.1 96 61-172 53-152 (439)
41 cd02510 pp-GalNAc-T pp-GalNAc- 55.6 99 0.0022 30.0 10.0 100 66-182 2-106 (299)
42 cd06423 CESA_like CESA_like is 52.0 1.4E+02 0.003 24.8 9.2 96 67-180 2-99 (180)
43 cd02511 Beta4Glucosyltransfera 51.9 1.3E+02 0.0028 27.9 9.8 96 63-182 1-97 (229)
44 cd04192 GT_2_like_e Subfamily 51.0 1.3E+02 0.0029 26.9 9.5 99 67-182 2-105 (229)
45 PRK06581 DNA polymerase III su 50.7 1.2E+02 0.0026 29.9 9.3 100 60-168 12-129 (263)
46 TIGR02803 ExbD_1 TonB system t 48.9 1.7E+02 0.0036 24.9 11.3 49 75-127 69-119 (122)
47 cd06913 beta3GnTL1_like Beta 1 48.9 1.7E+02 0.0037 26.5 10.0 95 67-172 2-99 (219)
48 cd04196 GT_2_like_d Subfamily 48.1 1.4E+02 0.0031 26.4 9.2 99 66-182 2-102 (214)
49 PRK11234 nfrB bacteriophage N4 47.8 1E+02 0.0023 34.7 9.6 102 58-170 59-168 (727)
50 PRK07993 DNA polymerase III su 46.0 1.3E+02 0.0027 30.6 9.2 80 79-167 65-147 (334)
51 PF07747 MTH865: MTH865-like f 44.1 10 0.00022 30.3 0.7 18 164-181 11-28 (75)
52 PRK08058 DNA polymerase III su 42.7 1.6E+02 0.0035 29.5 9.4 97 61-166 26-148 (329)
53 cd04185 GT_2_like_b Subfamily 42.6 2.4E+02 0.0053 24.9 9.9 90 67-171 2-93 (202)
54 KOG3339 Predicted glycosyltran 41.3 1.4E+02 0.003 28.3 7.7 113 64-182 40-158 (211)
55 PF12273 RCR: Chitin synthesis 40.9 24 0.00051 30.7 2.6 18 20-37 1-18 (130)
56 cd06442 DPM1_like DPM1_like re 39.3 1.6E+02 0.0035 26.5 8.1 97 67-182 2-101 (224)
57 PRK11498 bcsA cellulose syntha 39.1 4.3E+02 0.0094 30.5 12.9 95 59-173 257-355 (852)
58 TIGR02804 ExbD_2 TonB system t 37.1 2.6E+02 0.0056 23.7 10.2 48 75-127 71-118 (121)
59 PRK05564 DNA polymerase III su 37.0 2.5E+02 0.0055 27.7 9.6 98 61-166 24-131 (313)
60 cd06420 GT2_Chondriotin_Pol_N 36.1 2.8E+02 0.0062 23.9 9.9 99 67-182 2-102 (182)
61 PRK08309 short chain dehydroge 35.7 2.5E+02 0.0054 25.6 8.7 83 74-167 32-114 (177)
62 cd00761 Glyco_tranf_GTA_type G 35.5 2.3E+02 0.005 22.6 9.9 88 67-171 2-91 (156)
63 COG4746 Uncharacterized protei 35.4 19 0.00041 28.8 1.0 19 164-182 16-34 (80)
64 cd02522 GT_2_like_a GT_2_like_ 33.8 3.1E+02 0.0067 24.5 9.1 91 65-181 2-94 (221)
65 cd04188 DPG_synthase DPG_synth 33.3 2.1E+02 0.0046 25.7 7.9 97 67-182 2-105 (211)
66 PRK10714 undecaprenyl phosphat 32.8 5.1E+02 0.011 25.8 11.5 107 60-184 4-115 (325)
67 PRK07414 cob(I)yrinic acid a,c 32.6 4.1E+02 0.0089 24.6 9.7 106 75-191 36-152 (178)
68 PF13177 DNA_pol3_delta2: DNA 31.2 3.8E+02 0.0082 23.8 10.2 98 61-166 17-140 (162)
69 PRK15489 nfrB bacteriophage N4 31.2 2.8E+02 0.0061 31.3 9.6 99 59-173 68-179 (703)
70 PF02472 ExbD: Biopolymer tran 30.5 98 0.0021 26.0 4.8 40 74-113 74-116 (130)
71 cd06433 GT_2_WfgS_like WfgS an 29.4 3.7E+02 0.008 23.1 9.5 87 66-172 2-90 (202)
72 cd06438 EpsO_like EpsO protein 29.0 4E+02 0.0086 23.4 10.1 99 67-182 2-104 (183)
73 PF02572 CobA_CobO_BtuR: ATP:c 28.2 2.1E+02 0.0045 26.3 6.8 105 76-191 19-133 (172)
74 cd04195 GT2_AmsE_like GT2_AmsE 27.6 4.2E+02 0.0092 23.2 10.2 96 66-181 2-102 (201)
75 PRK08769 DNA polymerase III su 27.4 3.3E+02 0.0071 27.5 8.6 38 123-167 115-152 (319)
76 PRK05986 cob(I)alamin adenolsy 26.9 4.2E+02 0.0091 24.8 8.7 106 75-191 37-152 (191)
77 PF11051 Mannosyl_trans3: Mann 25.5 2.6E+02 0.0057 27.3 7.4 99 66-177 4-110 (271)
78 TIGR00824 EIIA-man PTS system, 25.4 3.3E+02 0.007 23.0 7.1 94 64-172 2-97 (116)
79 cd00006 PTS_IIA_man PTS_IIA, P 25.0 3E+02 0.0066 23.2 6.9 92 66-172 3-96 (122)
80 COG3618 Predicted metal-depend 23.6 4.4E+02 0.0095 26.3 8.4 92 74-176 145-244 (279)
81 cd06435 CESA_NdvC_like NdvC_li 23.1 5.7E+02 0.012 23.2 9.8 104 66-183 2-108 (236)
82 COG4814 Uncharacterized protei 23.0 2.2E+02 0.0048 28.3 6.1 40 61-101 45-88 (288)
83 COG2109 BtuR ATP:corrinoid ade 22.6 6.7E+02 0.014 23.8 9.9 107 75-191 43-159 (198)
84 PRK11267 biopolymer transport 22.3 5.3E+02 0.011 22.5 11.4 49 76-128 84-134 (141)
85 PRK14952 DNA polymerase III su 21.0 6.7E+02 0.014 27.6 10.1 98 61-166 33-156 (584)
86 cd00952 CHBPH_aldolase Trans-o 20.2 6.5E+02 0.014 25.0 9.2 98 74-184 27-129 (309)
No 1
>PLN03183 acetylglucosaminyltransferase family protein; Provisional
Probab=100.00 E-value=2.5e-116 Score=895.15 Aligned_cols=389 Identities=62% Similarity=1.102 Sum_probs=360.6
Q ss_pred CCCceehhHHHHHHHHHHHHHHhh---c-cCCCCC------------C--CC-------CCC--CCCCCCCCCceEEEee
Q 037238 17 PPNKWIFPLAVGSVVSIFLIFLTT---L-TSPTAT------------R--SS-------SPL--PVSLLPPPPRFAYLIS 69 (410)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~------------~--~~-------~~~--~~~~~~~~~kiAYLI~ 69 (410)
+++||++|++++++++++|+++++ . ++++++ + .+ .+. +.++++.||||||||+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~AYLI~ 85 (421)
T PLN03183 6 VEKRWVFPLVITSLVCVFLLATSFNMGLVSSLRTINSIFSIFPLSRTNQTRLEFAESKVNQSPHPPPVQDKLPRFAYLVS 85 (421)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhcccCCCccccccccccccccccccccccccccccCCCCCCCCCCCCCCeEEEEEE
Confidence 489999999999999988766443 1 111100 0 00 001 1234556999999999
Q ss_pred ccCCChHHHHHHHHHhhcCCCceEEEeecCCChHHhhHHHHHhhcccceeecccEEEEeecceeeecCchhHHhhHHHHH
Q 037238 70 GSVGDGNMIKRTLLALYHPNNVYVVHLDRASSESERLDLQNFVNGFHLFNKFSNVKMITKANLVTYRGPTMVANTLHAAA 149 (410)
Q Consensus 70 ~hk~d~~~l~RLL~aLy~p~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~AtL~~~~ 149 (410)
||++|.+|++|||++||||+|+||||+|+||+..++.+++..++++|++.+++||+|+++++.|+|||+|||+|||+||+
T Consensus 86 ~h~~d~~~l~RLL~aLYhprN~y~IHlDkKS~~~er~~l~~~v~~~~~~~~~~NV~vl~k~~~V~WGG~S~V~AtL~~m~ 165 (421)
T PLN03183 86 GSKGDLEKLWRTLRALYHPRNQYVVHLDLESPAEERLELASRVENDPMFSKVGNVYMITKANLVTYRGPTMVANTLHACA 165 (421)
T ss_pred ecCCcHHHHHHHHHHhcCCCceEEEEecCCCChHHHHHHHHHhhccchhhccCcEEEEecceeeccCChHHHHHHHHHHH
Confidence 99889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCcceEEecCCCCCCccccchhhHHhhcCCCCcccccccCcccccccccccceeeCCCCccccCCceEEEeeec
Q 037238 150 VLLREGGDWDWFINLSASDYPLVTQDDLLDAFSYLPRDLNFIDHTSNIGWKEFQRAKPIIIDPGLYMSKKADVFWVTQKR 229 (410)
Q Consensus 150 ~lL~~~~~wd~finLSgsDyPLkt~~~i~~~fs~~~~~~NFIe~~~~~~wk~~~R~~~~i~dpgly~~~k~~~~~~~~kR 229 (410)
.|++.+.+|||||||||+||||+||+||++.|+++|+|+|||++++..+|++.+|+++++++||+|..++++++|.+++|
T Consensus 166 ~LL~~~~~WDyfinLSGsDyPLkTqdelI~~F~~~nr~~NFI~~~s~~~wk~~~r~~~~i~~pgl~~~~ks~~~~~~~~R 245 (421)
T PLN03183 166 ILLKRSKDWDWFINLSASDYPLVTQDDLIHTFSTLDRNLNFIEHTSQLGWKEEKRAMPLIIDPGLYSTNKSDIYWVTPRR 245 (421)
T ss_pred HHHhhCCCCCEEEEccCCcccccCHHHHHHHHHhCCCCceeeecccccccchhhhcceEEecCceeecccchhhhhhhhc
Confidence 99998899999999999999999999988888889999999999988999999999999999999988888889999999
Q ss_pred ccccchhhccccchhhhhhhhhhhhhcccCCccceeehhhcccccCCCcceEEeecCccccccccccccceeeecCCCCC
Q 037238 230 SVPSAFKLFTGSAWMALSRSFIDYCIWGWDNLPRTVLMYYANFLSSPEGYFHTVICNAQEFRNTTVNSDLHFISWDNPPK 309 (410)
Q Consensus 230 ~~P~~~~l~~GS~W~~LsR~fvey~i~~~dn~pr~ll~yf~~~~~pdE~yFqTvl~Ns~~f~~t~vn~~LRyi~W~~~~~ 309 (410)
.+|.++++|+||+|++|||+|||||+++|||+|++++|||+++++|||+|||||+||+++|+++++|+|||||+|+++++
T Consensus 246 ~~P~~~~lf~GS~W~sLSR~fvey~l~~~dnlpr~ll~y~~~t~~pdE~fFqTVl~NS~~f~~t~vn~nLRyI~W~~~~~ 325 (421)
T PLN03183 246 SLPTAFKLFTGSAWMVLSRSFVEYCIWGWDNLPRTLLMYYTNFVSSPEGYFHTVICNVPEFAKTAVNHDLHYISWDNPPK 325 (421)
T ss_pred cCCccccccCCCceEEecHHHHHHHHhcccchHHHHHHHHhcCCCCchHHHHHHHhhcccccccccCCceeEEecCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCcccchhhhhhhhhCCCcccccCCCCCcchhhhhHHhhcCCCCCccCCccccCCCCCCCCCCcccCCCCcccCCcchh
Q 037238 310 QHPHYLNLADMQRMVDSNAPFARKFPREDPVLDKIDSELLSRNPGMVTPGGWCIGSRKNGSDPCSVVGNTTVLRPGPGAK 389 (410)
Q Consensus 310 ~hP~~l~~~D~~~l~~S~alFARKF~~dd~vld~Id~~ll~r~~~~~~~g~w~~~~~~~~~~~c~~~g~~~~~~pg~~~~ 389 (410)
+||++|+++|+++|++|+++|||||+.|++|||+||++|++|..++++|||||.| .||||+|||+++|||||||+
T Consensus 326 ~~P~~l~~~D~~~l~~S~~lFARKFd~d~~vl~~Id~~ll~r~~~~~~~g~wc~~-----~~~c~~~~~~~~~~p~~~~~ 400 (421)
T PLN03183 326 QHPHTLSLNDTEKMIASGAAFARKFRRDDPVLDKIDKELLGRKNGSFTPGGWCSG-----KPKCSRVGDPAKIKPGPGAQ 400 (421)
T ss_pred CCCcccCHHHHHHHHhCCCccccCCCCChHHHHHHHHHHhCCCCCCccCCcccCC-----CCcccccCCcCccCCCcHHH
Confidence 9999999999999999999999999999999999999999999999999999986 57999999999999999999
Q ss_pred hHHHHHHhhcccCCCCCCCCC
Q 037238 390 RLGSLITSLLSKEKFRPGQCK 410 (410)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~c~ 410 (410)
||++||++||++++||++||+
T Consensus 401 ~~~~~~~~~~~~~~~~~~~c~ 421 (421)
T PLN03183 401 RLKGLVSRLVLEAKLGQNQCK 421 (421)
T ss_pred HHHHHHHHHhchhccccccCC
Confidence 999999999999999999996
No 2
>KOG0799 consensus Branching enzyme [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.9e-67 Score=539.04 Aligned_cols=334 Identities=47% Similarity=0.786 Sum_probs=307.1
Q ss_pred CCCCCCceEEEeeccCCChHHHHHHHHHhhcCCCceEEEeecCCChHHhhHHHHHhhcccceeecccEEEEeecceeeec
Q 037238 57 LLPPPPRFAYLISGSVGDGNMIKRTLLALYHPNNVYVVHLDRASSESERLDLQNFVNGFHLFNKFSNVKMITKANLVTYR 136 (410)
Q Consensus 57 ~~~~~~kiAYLI~~hk~d~~~l~RLL~aLy~p~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wg 136 (410)
..+.+++.||++++..+|.++++|+|+|+|||+|.||||||++|+++++..++. +..|++||+|+++++.|+||
T Consensus 97 s~~~~~~~~a~~~~v~kd~~~verll~aiYhPqN~ycihvD~~s~~~fk~~~~~------L~~cf~NV~v~~k~~~v~~~ 170 (439)
T KOG0799|consen 97 SKELKPFPAAFLRVVYKDYEQVERLLQAIYHPQNVYCIHVDAKSPPEFRVAMQQ------LASCFPNVIVLPKRESVTYG 170 (439)
T ss_pred cccccccceEEEEeecccHHHHHHHHHHHhCCcCcceEEECCCCCHHHHHHHHH------HHhcCCceEEeccccceecC
Confidence 344555444444444459999999999999999999999999999999977664 66899999999999999999
Q ss_pred CchhHHhhHHHHHHHhhcCCCcceEEecCCCCCCccccchhhHHhhcCCCCcccccccCcccccccccccceeeCCCCcc
Q 037238 137 GPTMVANTLHAAAVLLREGGDWDWFINLSASDYPLVTQDDLLDAFSYLPRDLNFIDHTSNIGWKEFQRAKPIIIDPGLYM 216 (410)
Q Consensus 137 g~S~V~AtL~~~~~lL~~~~~wd~finLSgsDyPLkt~~~i~~~fs~~~~~~NFIe~~~~~~wk~~~R~~~~i~dpgly~ 216 (410)
|+|+++|+|+||+.|++...+|||||||||+|||||||+||+++|+.+ +|.|||++++..+|++.++.++.+.+++ |+
T Consensus 171 G~s~l~a~l~c~~~Ll~~~~~W~yfinLs~~D~PlkT~~elv~i~~~L-~g~N~i~~~~~~~~~~~~~~k~~~~~~~-~~ 248 (439)
T KOG0799|consen 171 GHSILAAHLNCLADLLKLSGDWDYFINLSNSDYPLKTNDELVRIFKIL-RGANFVEHTSEIGWKLNRKAKWDIIDLK-YF 248 (439)
T ss_pred CchhhHHHHHHHHHHHhcCCCCceeeeccCCCcccCCHHHHHHHHHHc-CCcccccCcccccHHHhcccCCcccccc-hh
Confidence 999999999999999999889999999999999999999999999987 7999999999999999999988888888 77
Q ss_pred ccCCceEEEeeecccccchhhccccchhhhhhhhhhhhhcccCCccceeehhhcccccCCCcceEEeecCcccccccccc
Q 037238 217 SKKADVFWVTQKRSVPSAFKLFTGSAWMALSRSFIDYCIWGWDNLPRTVLMYYANFLSSPEGYFHTVICNAQEFRNTTVN 296 (410)
Q Consensus 217 ~~k~~~~~~~~kR~~P~~~~l~~GS~W~~LsR~fvey~i~~~dn~pr~ll~yf~~~~~pdE~yFqTvl~Ns~~f~~t~vn 296 (410)
.+++.+.|.. +|+++++++||.|++|||+||+||++ +++|+++++||+++++|||+|||||+||+ |..+.++
T Consensus 249 ~~~s~~~~~~----lp~~~ki~~Gs~~~~LsR~fv~y~i~--~~~~~~ll~~~~~t~~~dE~f~~Tl~~n~--~~~~g~~ 320 (439)
T KOG0799|consen 249 RNKSPLPWVI----LPTALKLFKGSAWVSLSRAFVEYLIS--GNLPRTLLMYYNNTYSPDEGFFHTLQCNP--FGMPGVF 320 (439)
T ss_pred eecCCCcccc----CCCceEEEecceeEEEeHHHHHHHhc--CccHHHHHHHHhCccCcchhhhHhhhccc--cCCCCcc
Confidence 7777777665 89999999999999999999999998 48899999999999999999999999998 8888899
Q ss_pred cc--ceeeecCC----CCCCCCcccchhhhhhhhhCCC-cccccCC--CCCcchhhhhHHhhcCCCCCccCCccccCCCC
Q 037238 297 SD--LHFISWDN----PPKQHPHYLNLADMQRMVDSNA-PFARKFP--REDPVLDKIDSELLSRNPGMVTPGGWCIGSRK 367 (410)
Q Consensus 297 ~~--LRyi~W~~----~~~~hP~~l~~~D~~~l~~S~a-lFARKF~--~dd~vld~Id~~ll~r~~~~~~~g~w~~~~~~ 367 (410)
+| +||+.|+. ++++||+.++..|+..|..++. .|||||. .++++++.+|.+++++.....++|+|| ...
T Consensus 321 ~~~~lr~~~W~~~~~~~~~~~c~~~~~~~~~cv~g~~~~~~~~k~~~l~~nkvl~~~d~~~i~c~~~~~~~~~~~--~~~ 398 (439)
T KOG0799|consen 321 NDECLRYTNWDRKDVDPPKQHCHSLTVRDFICVFGSGDLPFARKFPHLVANKVLDKFDPELIGCLAEFNRTGGWC--DHS 398 (439)
T ss_pred cchhhcceecccccccccccCCcccccccceeeeecchhHHHhhCchhhcccchhccCHHHHhhhhhccCccccc--ccc
Confidence 99 99999998 6788999999999999999999 9999999 589999999999999988888999999 667
Q ss_pred CCCCCCcccCCCCcccCCcchhhHHHHHHhhcccCCCCCCC
Q 037238 368 NGSDPCSVVGNTTVLRPGPGAKRLGSLITSLLSKEKFRPGQ 408 (410)
Q Consensus 368 ~~~~~c~~~g~~~~~~pg~~~~~~~~~~~~~~~~~~~~~~~ 408 (410)
+++++|+..++...+.|||++.|++.++..++..++|+..|
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (439)
T KOG0799|consen 399 LRTLPCSELGDAVKLTPGPGAPRLEELCTPLLSHENFRLYQ 439 (439)
T ss_pred cccccccccccceeeccCCcchhHHhhhhccccchhhhccC
Confidence 78899999999999999999999999999999999999876
No 3
>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase family 14 GT14 from CAZY, a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme (2.4.1.150 from EC) and core-2 branching enzyme (2.4.1.102 from EC). I-branching enzyme, an integral membrane protein, converts linear into branched poly-N-acetyllactosaminoglycans in the glycosylation pathway, and is responsible for the production of the blood group I-antigen during embryonic development []. Core-2 branching enzyme, also an integral membrane protein, forms crucial side-chain branches in O-glycans in the glycosylation pathway [].; GO: 0008375 acetylglucosaminyltransferase activity, 0016020 membrane; PDB: 3OTK_D 2GAM_A 2GAK_B.
Probab=100.00 E-value=1.1e-53 Score=408.44 Aligned_cols=238 Identities=33% Similarity=0.571 Sum_probs=158.8
Q ss_pred eEEEeeccCCChHHHHHHHHHhhcCCCceEEEeecCCChHHhhHHHHHhhcccceeecccEEEEeecceeeecCchhHHh
Q 037238 64 FAYLISGSVGDGNMIKRTLLALYHPNNVYVVHLDRASSESERLDLQNFVNGFHLFNKFSNVKMITKANLVTYRGPTMVAN 143 (410)
Q Consensus 64 iAYLI~~hk~d~~~l~RLL~aLy~p~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~A 143 (410)
|||||++|+++++++++|++++|+|+|.||||||+|++...+.+++.. ..+++||++++++..|.|||+|+|+|
T Consensus 1 iAylil~h~~~~~~~~~l~~~l~~~~~~f~iHiD~k~~~~~~~~~~~~------~~~~~nv~~v~~r~~v~WG~~S~v~A 74 (244)
T PF02485_consen 1 IAYLILAHKNDPEQLERLLRLLYHPDNDFYIHIDKKSPDYFYEEIKKL------ISCFPNVHFVPKRVDVRWGGFSLVEA 74 (244)
T ss_dssp EEEEEEESS--HHHHHHHHHHH--TTSEEEEEE-TTS-HHHHHHHHHH------HCT-TTEEE-SS-----TTSHHHHHH
T ss_pred CEEEEEecCCCHHHHHHHHHHhcCCCCEEEEEEcCCCChHHHHHHHHh------cccCCceeecccccccccCCccHHHH
Confidence 799999998899999999999999999999999999998888878764 35789999999999999999999999
Q ss_pred hHHHHHHHhhcCCCcceEEecCCCCCCccccchhhHHhhcCCCCcccccccCcccccccccccceeeCCCCccccCCceE
Q 037238 144 TLHAAAVLLREGGDWDWFINLSASDYPLVTQDDLLDAFSYLPRDLNFIDHTSNIGWKEFQRAKPIIIDPGLYMSKKADVF 223 (410)
Q Consensus 144 tL~~~~~lL~~~~~wd~finLSgsDyPLkt~~~i~~~fs~~~~~~NFIe~~~~~~wk~~~R~~~~i~dpgly~~~k~~~~ 223 (410)
||.||+.|++.+.+|||||||||+||||+|+++|.++|+..+++.+|+++....+.....|+.+...++..+
T Consensus 75 ~l~ll~~al~~~~~~~y~~llSg~D~Pl~s~~~i~~~l~~~~~~~~f~~~~~~~~~~~~~r~~~~~~~~~~~-------- 146 (244)
T PF02485_consen 75 TLNLLREALKRDGDWDYFILLSGQDYPLKSNEEIHEFLESNNGDNNFIESFSDEDPRESGRYNPRIYDPFRP-------- 146 (244)
T ss_dssp HHHHHHHHHHH-S---EEEEEETTEEESS-HHHHHHHHHHTTT--B---BEE--GGGG-HHHHEEEETTEEE--------
T ss_pred HHHHHHHHHhcCCCCcEEEEcccccccccchHHHHHHHHhcCCCCcceecccccccchhhcceeeeeeeccc--------
Confidence 999999999976799999999999999999999999999877778999987655443223433222221111
Q ss_pred EEeeecccccchhhccccchhhhhhhhhhhhhcccCCccceeeh-hhcccccCCCcceEEeecCccccccccccccceee
Q 037238 224 WVTQKRSVPSAFKLFTGSAWMALSRSFIDYCIWGWDNLPRTVLM-YYANFLSSPEGYFHTVICNAQEFRNTTVNSDLHFI 302 (410)
Q Consensus 224 ~~~~kR~~P~~~~l~~GS~W~~LsR~fvey~i~~~dn~pr~ll~-yf~~~~~pdE~yFqTvl~Ns~~f~~t~vn~~LRyi 302 (410)
...++ ++|+|||||+|||+||+||+. |......++ +++++++|||.|||||++|++.|+++++++++|||
T Consensus 147 -~~~~~------~~~~GSqW~~Ltr~~v~~il~--~~~~~~~~~~~~~~~~~pDE~ffqTll~n~~~~~~~~~~~~~r~i 217 (244)
T PF02485_consen 147 -FFRKR------TLYKGSQWFSLTRDFVEYILD--DPNYRPKLKKYFRFSLCPDESFFQTLLNNSGHFKDTIVNRNLRYI 217 (244)
T ss_dssp -EEEEE--------EEE-S--EEEHHHHHHHHH---HHHHHHHHHHT-TSSSGGGTHHHHH--SSGGG-B-TTTSSSEEE
T ss_pred -ccccc------cccccceeeEeeHHHHHHhhh--hHHHHHHHHHhhcCccCcchhhHHHhhcccchhcccccCCCEEEE
Confidence 01111 899999999999999999995 444444444 44589999999999999999889999999999999
Q ss_pred ecCCCCCCCCcc-----cchhhhhhhh
Q 037238 303 SWDNPPKQHPHY-----LNLADMQRMV 324 (410)
Q Consensus 303 ~W~~~~~~hP~~-----l~~~D~~~l~ 324 (410)
+|++..++||++ +|++|+++|.
T Consensus 218 ~W~~~~~~~p~~~~~~~~~~~d~~~~~ 244 (244)
T PF02485_consen 218 DWSRRGGCHPKTLTICDLGPEDLPWLK 244 (244)
T ss_dssp -BTGT-SS---SSEEEE--GGGHHHH-
T ss_pred ECCCCCCCCCCeeeeeeeCHHHHHhhC
Confidence 999545677654 5778888773
No 4
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=95.41 E-value=0.53 Score=48.26 Aligned_cols=117 Identities=11% Similarity=0.117 Sum_probs=72.1
Q ss_pred CCCCCCceEEEeeccCCChHHHHHHHHHhhc---CCCceEEEeecCCChHHhhHHHHHhhcccceeecccEEEEeec-ce
Q 037238 57 LLPPPPRFAYLISGSVGDGNMIKRTLLALYH---PNNVYVVHLDRASSESERLDLQNFVNGFHLFNKFSNVKMITKA-NL 132 (410)
Q Consensus 57 ~~~~~~kiAYLI~~hk~d~~~l~RLL~aLy~---p~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~-~~ 132 (410)
.++..|++..+|-+++ +.+.+.++|+.|.. |.+.=+|-+|..|++.-.+.++++.+..| ..++++++... ..
T Consensus 35 ~~~~~p~VSVIIpa~N-e~~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~~---~~~~i~vi~~~~~~ 110 (384)
T TIGR03469 35 SPEAWPAVVAVVPARN-EADVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAAARAYG---RGDRLTVVSGQPLP 110 (384)
T ss_pred CCCCCCCEEEEEecCC-cHhHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHHHHHHhcC---CCCcEEEecCCCCC
Confidence 3456788999999987 67999999999863 43445678888877665444544432221 12378888632 23
Q ss_pred eeecCchhHHhhHHHHHHHhhcCCCcceEEecCCCCCCccccchhhHHh
Q 037238 133 VTYRGPTMVANTLHAAAVLLREGGDWDWFINLSASDYPLVTQDDLLDAF 181 (410)
Q Consensus 133 V~wgg~S~V~AtL~~~~~lL~~~~~wd~finLSgsDyPLkt~~~i~~~f 181 (410)
..|+|- ..|.-.+++.+-+...+-||++.+-+.+.+ +.+.+.+..
T Consensus 111 ~g~~Gk--~~A~n~g~~~A~~~~~~gd~llflDaD~~~--~p~~l~~lv 155 (384)
T TIGR03469 111 PGWSGK--LWAVSQGIAAARTLAPPADYLLLTDADIAH--GPDNLARLV 155 (384)
T ss_pred CCCcch--HHHHHHHHHHHhccCCCCCEEEEECCCCCC--ChhHHHHHH
Confidence 355543 334444555554333346899999888875 444444443
No 5
>PRK11204 N-glycosyltransferase; Provisional
Probab=90.74 E-value=6.3 Score=40.45 Aligned_cols=102 Identities=17% Similarity=0.239 Sum_probs=62.0
Q ss_pred CCCCceEEEeeccCCChHHHHHHHHHhh---cCCCceEEEeecCCChHHhhHHHHHhhcccceeecccEEEEeecceeee
Q 037238 59 PPPPRFAYLISGSVGDGNMIKRTLLALY---HPNNVYVVHLDRASSESERLDLQNFVNGFHLFNKFSNVKMITKANLVTY 135 (410)
Q Consensus 59 ~~~~kiAYLI~~hk~d~~~l~RLL~aLy---~p~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~w 135 (410)
+..|+++.+|-+|+ +.+.+.++++++. .|... +|=+|..++++..+.+++.. ...+++.++.....
T Consensus 51 ~~~p~vsViIp~yn-e~~~i~~~l~sl~~q~yp~~e-iiVvdD~s~d~t~~~l~~~~------~~~~~v~~i~~~~n--- 119 (420)
T PRK11204 51 KEYPGVSILVPCYN-EGENVEETISHLLALRYPNYE-VIAINDGSSDNTGEILDRLA------AQIPRLRVIHLAEN--- 119 (420)
T ss_pred CCCCCEEEEEecCC-CHHHHHHHHHHHHhCCCCCeE-EEEEECCCCccHHHHHHHHH------HhCCcEEEEEcCCC---
Confidence 45679999999997 6788999888765 35334 45567666655555454432 24678888863221
Q ss_pred cCchhHHhhHHHHHHHhhcCCCcceEEecCCCCCCccccchhhHH
Q 037238 136 RGPTMVANTLHAAAVLLREGGDWDWFINLSASDYPLVTQDDLLDA 180 (410)
Q Consensus 136 gg~S~V~AtL~~~~~lL~~~~~wd~finLSgsDyPLkt~~~i~~~ 180 (410)
+| ...|--.+++. .+.||++.+-+.+.| +.+-+.+.
T Consensus 120 ~G--ka~aln~g~~~-----a~~d~i~~lDaD~~~--~~d~L~~l 155 (420)
T PRK11204 120 QG--KANALNTGAAA-----ARSEYLVCIDGDALL--DPDAAAYM 155 (420)
T ss_pred CC--HHHHHHHHHHH-----cCCCEEEEECCCCCC--ChhHHHHH
Confidence 23 22222223332 257999999998877 44444333
No 6
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=87.95 E-value=12 Score=38.03 Aligned_cols=105 Identities=11% Similarity=0.078 Sum_probs=61.0
Q ss_pred CCceEEEeeccCCChHHHHHHHHHhh---cCCCceEEEeecCCChHHhhHHHHHhhcccceeeccc--EEEEeecceeee
Q 037238 61 PPRFAYLISGSVGDGNMIKRTLLALY---HPNNVYVVHLDRASSESERLDLQNFVNGFHLFNKFSN--VKMITKANLVTY 135 (410)
Q Consensus 61 ~~kiAYLI~~hk~d~~~l~RLL~aLy---~p~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~N--V~vv~~~~~V~w 135 (410)
.|++..+|-+++ +.+.+.+.|+++- .|+-.++| +|..+++...+.++++.+ .+++ |+++.......|
T Consensus 40 ~p~VSViiP~~n-ee~~l~~~L~Sl~~q~Yp~~EIiv-vdd~s~D~t~~iv~~~~~------~~p~~~i~~v~~~~~~G~ 111 (373)
T TIGR03472 40 WPPVSVLKPLHG-DEPELYENLASFCRQDYPGFQMLF-GVQDPDDPALAVVRRLRA------DFPDADIDLVIDARRHGP 111 (373)
T ss_pred CCCeEEEEECCC-CChhHHHHHHHHHhcCCCCeEEEE-EeCCCCCcHHHHHHHHHH------hCCCCceEEEECCCCCCC
Confidence 577999999997 5678888888774 35544444 666665544444444332 3454 666644333233
Q ss_pred cCchhHHhhHHHHHHHhhcCCCcceEEecCCCCCCccccchhhHHhh
Q 037238 136 RGPTMVANTLHAAAVLLREGGDWDWFINLSASDYPLVTQDDLLDAFS 182 (410)
Q Consensus 136 gg~S~V~AtL~~~~~lL~~~~~wd~finLSgsDyPLkt~~~i~~~fs 182 (410)
.+ -+.+..++++. .+-||++.+-+.+.| +.+-|.+...
T Consensus 112 ~~--K~~~l~~~~~~-----a~ge~i~~~DaD~~~--~p~~L~~lv~ 149 (373)
T TIGR03472 112 NR--KVSNLINMLPH-----ARHDILVIADSDISV--GPDYLRQVVA 149 (373)
T ss_pred Ch--HHHHHHHHHHh-----ccCCEEEEECCCCCc--ChhHHHHHHH
Confidence 22 33333333322 246898888887776 5666655544
No 7
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=87.86 E-value=13 Score=38.96 Aligned_cols=103 Identities=11% Similarity=0.181 Sum_probs=61.2
Q ss_pred CCCCceEEEeeccCCChHHHHHHHHHhh---cCCCce-EEEeecCCChHHhhHHHHHhhcccceeecccEEEEeecceee
Q 037238 59 PPPPRFAYLISGSVGDGNMIKRTLLALY---HPNNVY-VVHLDRASSESERLDLQNFVNGFHLFNKFSNVKMITKANLVT 134 (410)
Q Consensus 59 ~~~~kiAYLI~~hk~d~~~l~RLL~aLy---~p~n~y-~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~ 134 (410)
...|+++.+|-+|+ +.+.+.++|+++. .|...+ +|=+|..++++..+.+++.. ..++++.++.....
T Consensus 46 ~~~P~vsVIIP~yN-e~~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~~------~~~~~v~v~~~~~~-- 116 (439)
T TIGR03111 46 GKLPDITIIIPVYN-SEDTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRAQ------NEFPGLSLRYMNSD-- 116 (439)
T ss_pred CCCCCEEEEEEeCC-ChHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHHH------HhCCCeEEEEeCCC--
Confidence 44578999999998 6789999998875 354433 66678777666544444322 24567776532211
Q ss_pred ecCchhHHhhHHHHHHHhhcCCCcceEEecCCCCCCccccchhhHH
Q 037238 135 YRGPTMVANTLHAAAVLLREGGDWDWFINLSASDYPLVTQDDLLDA 180 (410)
Q Consensus 135 wgg~S~V~AtL~~~~~lL~~~~~wd~finLSgsDyPLkt~~~i~~~ 180 (410)
+|.+ ..+ ..+++.. +-||++.+-+.+.| ..+.+.+.
T Consensus 117 -~Gka---~Al---N~gl~~s-~g~~v~~~DaD~~~--~~d~L~~l 152 (439)
T TIGR03111 117 -QGKA---KAL---NAAIYNS-IGKYIIHIDSDGKL--HKDAIKNM 152 (439)
T ss_pred -CCHH---HHH---HHHHHHc-cCCEEEEECCCCCc--ChHHHHHH
Confidence 3432 122 2222322 34789999888887 44444433
No 8
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=85.86 E-value=7.9 Score=35.68 Aligned_cols=100 Identities=17% Similarity=0.195 Sum_probs=61.1
Q ss_pred ceEEEeeccCCChHHHHHHHHHhhc---C-CCceEEEeecCCChHHhhHHHHHhhcccceeecccEEEEeecceeeecCc
Q 037238 63 RFAYLISGSVGDGNMIKRTLLALYH---P-NNVYVVHLDRASSESERLDLQNFVNGFHLFNKFSNVKMITKANLVTYRGP 138 (410)
Q Consensus 63 kiAYLI~~hk~d~~~l~RLL~aLy~---p-~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~ 138 (410)
+++.+|.+++ +.+.+.++|..+.. | .+.=+|=+|..++++....++.+. ...++|+++..... |
T Consensus 1 ~~sIiip~~n-~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~------~~~~~v~~i~~~~~----~- 68 (249)
T cd02525 1 FVSIIIPVRN-EEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYA------AKDPRIRLIDNPKR----I- 68 (249)
T ss_pred CEEEEEEcCC-chhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHH------hcCCeEEEEeCCCC----C-
Confidence 4677888887 78889998888852 2 333355667666655444444432 24567888865421 2
Q ss_pred hhHHhhHHHHHHHhhcCCCcceEEecCCCCCCccccchhhHHhh
Q 037238 139 TMVANTLHAAAVLLREGGDWDWFINLSASDYPLVTQDDLLDAFS 182 (410)
Q Consensus 139 S~V~AtL~~~~~lL~~~~~wd~finLSgsDyPLkt~~~i~~~fs 182 (410)
...|--.+++.+ +.||++.|.+.|.+ +.+.+...+.
T Consensus 69 -~~~a~N~g~~~a-----~~d~v~~lD~D~~~--~~~~l~~~~~ 104 (249)
T cd02525 69 -QSAGLNIGIRNS-----RGDIIIRVDAHAVY--PKDYILELVE 104 (249)
T ss_pred -chHHHHHHHHHh-----CCCEEEEECCCccC--CHHHHHHHHH
Confidence 123333333332 47999999999986 5555555553
No 9
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=84.75 E-value=28 Score=36.33 Aligned_cols=100 Identities=15% Similarity=0.181 Sum_probs=61.8
Q ss_pred CCCCceEEEeeccCCChHHHHHHHHHhh---cCCCceEEEeecCCChHHhhHHHHHhhcccceeecccEEEEeecceeee
Q 037238 59 PPPPRFAYLISGSVGDGNMIKRTLLALY---HPNNVYVVHLDRASSESERLDLQNFVNGFHLFNKFSNVKMITKANLVTY 135 (410)
Q Consensus 59 ~~~~kiAYLI~~hk~d~~~l~RLL~aLy---~p~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~w 135 (410)
+..|+++.+|-+|+ +.+.+.++|+++- .|+-. +|-+|..++++..+.+++..+ ..++++++.... .
T Consensus 72 ~~~p~vsViIP~yN-E~~~i~~~l~sll~q~yp~~e-IivVdDgs~D~t~~~~~~~~~------~~~~v~vv~~~~---n 140 (444)
T PRK14583 72 KGHPLVSILVPCFN-EGLNARETIHAALAQTYTNIE-VIAINDGSSDDTAQVLDALLA------EDPRLRVIHLAH---N 140 (444)
T ss_pred CCCCcEEEEEEeCC-CHHHHHHHHHHHHcCCCCCeE-EEEEECCCCccHHHHHHHHHH------hCCCEEEEEeCC---C
Confidence 34578999999997 6677888888764 35433 566777666655555554332 456788875321 2
Q ss_pred cCchhHHhhHHHHHHHhhcCCCcceEEecCCCCCCccccchhh
Q 037238 136 RGPTMVANTLHAAAVLLREGGDWDWFINLSASDYPLVTQDDLL 178 (410)
Q Consensus 136 gg~S~V~AtL~~~~~lL~~~~~wd~finLSgsDyPLkt~~~i~ 178 (410)
+| . .. ++...++. .+.||++.+-+.+.| ..+.+.
T Consensus 141 ~G--k-a~---AlN~gl~~-a~~d~iv~lDAD~~~--~~d~L~ 174 (444)
T PRK14583 141 QG--K-AI---ALRMGAAA-ARSEYLVCIDGDALL--DKNAVP 174 (444)
T ss_pred CC--H-HH---HHHHHHHh-CCCCEEEEECCCCCc--CHHHHH
Confidence 33 1 12 22223332 357999999999986 444443
No 10
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=81.82 E-value=18 Score=33.66 Aligned_cols=106 Identities=17% Similarity=0.103 Sum_probs=63.6
Q ss_pred CCCCCCCceEEEeeccCCChHHHHHHHHHhhc---CCC--ceEEEeecCCChHHhhHHHHHhhcccceeecccEEEEeec
Q 037238 56 SLLPPPPRFAYLISGSVGDGNMIKRTLLALYH---PNN--VYVVHLDRASSESERLDLQNFVNGFHLFNKFSNVKMITKA 130 (410)
Q Consensus 56 ~~~~~~~kiAYLI~~hk~d~~~l~RLL~aLy~---p~n--~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~ 130 (410)
+....+|+++.+|.+++ +.+.+.++|+.+.. |.. .++|..|. +++...+.++.+. .. +|.++...
T Consensus 23 ~~~~~~~~isVvip~~n-~~~~l~~~l~si~~q~~~~~~~eiivvdd~-s~d~t~~~~~~~~-------~~-~v~~i~~~ 92 (251)
T cd06439 23 PDPAYLPTVTIIIPAYN-EEAVIEAKLENLLALDYPRDRLEIIVVSDG-STDGTAEIAREYA-------DK-GVKLLRFP 92 (251)
T ss_pred CCCCCCCEEEEEEecCC-cHHHHHHHHHHHHhCcCCCCcEEEEEEECC-CCccHHHHHHHHh-------hC-cEEEEEcC
Confidence 44556789999999997 67889888888743 332 34555554 4444333333321 11 67777543
Q ss_pred ceeeecCchhHHhhHHHHHHHhhcCCCcceEEecCCCCCCccccchhhHHhhc
Q 037238 131 NLVTYRGPTMVANTLHAAAVLLREGGDWDWFINLSASDYPLVTQDDLLDAFSY 183 (410)
Q Consensus 131 ~~V~wgg~S~V~AtL~~~~~lL~~~~~wd~finLSgsDyPLkt~~~i~~~fs~ 183 (410)
.. . +...|-..+++.+ . -||++++-+.+.|- .+.+...+..
T Consensus 93 ~~---~--g~~~a~n~gi~~a----~-~d~i~~lD~D~~~~--~~~l~~l~~~ 133 (251)
T cd06439 93 ER---R--GKAAALNRALALA----T-GEIVVFTDANALLD--PDALRLLVRH 133 (251)
T ss_pred CC---C--ChHHHHHHHHHHc----C-CCEEEEEccccCcC--HHHHHHHHHH
Confidence 22 2 2344444444443 1 39999999999984 5656555543
No 11
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=81.77 E-value=25 Score=35.44 Aligned_cols=112 Identities=10% Similarity=0.097 Sum_probs=61.1
Q ss_pred CCCCCceEEEeeccCCChHHHHHHHHHhhc---------C-CCceEEEeecCCChHHhhHHHHHhhcccceeecccEEEE
Q 037238 58 LPPPPRFAYLISGSVGDGNMIKRTLLALYH---------P-NNVYVVHLDRASSESERLDLQNFVNGFHLFNKFSNVKMI 127 (410)
Q Consensus 58 ~~~~~kiAYLI~~hk~d~~~l~RLL~aLy~---------p-~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv 127 (410)
.+.++.+..+|-+++ +.+.+.++|+.+.. | .+.=+|=||-.|++.-.+.++++.+... ..-.+++++
T Consensus 66 ~~~~~~isVVIP~yN-e~~~i~~~L~~l~~~~~~~~~~~~~~~~EIIVVDDgStD~T~~i~~~~~~~~~--~~~~~i~vi 142 (333)
T PTZ00260 66 KDSDVDLSIVIPAYN-EEDRLPKMLKETIKYLESRSRKDPKFKYEIIIVNDGSKDKTLKVAKDFWRQNI--NPNIDIRLL 142 (333)
T ss_pred CCCCeEEEEEEeeCC-CHHHHHHHHHHHHHHHHhhhccCCCCCEEEEEEeCCCCCchHHHHHHHHHhcC--CCCCcEEEE
Confidence 456789999999997 67788888887642 2 2344677787776655444444432110 001358887
Q ss_pred eecceeeecCchhHHhhHHHHHHHhhcCCCcceEEecCCCCC-CccccchhhHHhh
Q 037238 128 TKANLVTYRGPTMVANTLHAAAVLLREGGDWDWFINLSASDY-PLVTQDDLLDAFS 182 (410)
Q Consensus 128 ~~~~~V~wgg~S~V~AtL~~~~~lL~~~~~wd~finLSgsDy-PLkt~~~i~~~fs 182 (410)
..... .|. -.|-..+++.+ .-||++++-+.+. +....+.+.+.+.
T Consensus 143 ~~~~N---~G~--~~A~~~Gi~~a-----~gd~I~~~DaD~~~~~~~l~~l~~~l~ 188 (333)
T PTZ00260 143 SLLRN---KGK--GGAVRIGMLAS-----RGKYILMVDADGATDIDDFDKLEDIML 188 (333)
T ss_pred EcCCC---CCh--HHHHHHHHHHc-----cCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 53322 122 23333344432 2378887777654 3333344544443
No 12
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=80.63 E-value=1.1 Score=31.55 Aligned_cols=29 Identities=28% Similarity=0.417 Sum_probs=25.1
Q ss_pred eeccCCChHHHHHHHHHhhcCCCceEEEeec
Q 037238 68 ISGSVGDGNMIKRTLLALYHPNNVYVVHLDR 98 (410)
Q Consensus 68 I~~hk~d~~~l~RLL~aLy~p~n~y~IHlD~ 98 (410)
.+||. |.++|..+++.+ .|++.++||=|.
T Consensus 14 fSgHa-d~~~L~~~i~~~-~p~~vilVHGe~ 42 (43)
T PF07521_consen 14 FSGHA-DREELLEFIEQL-NPRKVILVHGEP 42 (43)
T ss_dssp CSSS--BHHHHHHHHHHH-CSSEEEEESSEH
T ss_pred ecCCC-CHHHHHHHHHhc-CCCEEEEecCCC
Confidence 57886 999999999999 899999999764
No 13
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=80.30 E-value=38 Score=37.93 Aligned_cols=117 Identities=16% Similarity=0.146 Sum_probs=61.1
Q ss_pred CCCCCCCceEEEeeccCCChHH----HHHHHHHhh---cCCCceEEEeecCCChHH----hhHHHHHhhcccceeecccE
Q 037238 56 SLLPPPPRFAYLISGSVGDGNM----IKRTLLALY---HPNNVYVVHLDRASSESE----RLDLQNFVNGFHLFNKFSNV 124 (410)
Q Consensus 56 ~~~~~~~kiAYLI~~hk~d~~~----l~RLL~aLy---~p~n~y~IHlD~ka~~~~----~~~l~~~v~~~~~~~~~~NV 124 (410)
.+.+..++.+.+|-+|+.|++. ++..++.+. ++++..++=+|..++++. ++++++..+.. ...++|
T Consensus 118 ~~~~~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~~~~~~~~e~~vLdD~~d~~~~~~e~~~~~~L~~~~---~~~~~i 194 (691)
T PRK05454 118 PPPPPEARTAILMPIYNEDPARVFAGLRAMYESLAATGHGAHFDFFILSDTRDPDIAAAEEAAWLELRAEL---GGEGRI 194 (691)
T ss_pred CCCCCCCceEEEEeCCCCChHHHHHHHHHHHHHHHhcCCCCCEEEEEEECCCChhHHHHHHHHHHHHHHhc---CCCCcE
Confidence 4456678999999999877654 444454443 455555666666554432 22232222211 123577
Q ss_pred EEEeecceeeecCchhHHhhHHHHHHHhhcCCCcceEEecCCCCCCccc-cchhhHHhh
Q 037238 125 KMITKANLVTYRGPTMVANTLHAAAVLLREGGDWDWFINLSASDYPLVT-QDDLLDAFS 182 (410)
Q Consensus 125 ~vv~~~~~V~wgg~S~V~AtL~~~~~lL~~~~~wd~finLSgsDyPLkt-~~~i~~~fs 182 (410)
++....... |.. .- +....+-+.+.++||++.|-+...|-.. ..++...++
T Consensus 195 ~yr~R~~n~---~~K-aG---Nl~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~ 246 (691)
T PRK05454 195 FYRRRRRNV---GRK-AG---NIADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLME 246 (691)
T ss_pred EEEECCcCC---Ccc-HH---HHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHh
Confidence 775433322 221 11 1111122234578999999888876532 344444443
No 14
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=77.89 E-value=22 Score=38.30 Aligned_cols=101 Identities=13% Similarity=0.137 Sum_probs=59.0
Q ss_pred CCCceEEEeeccCCChHHHHHHHHH----hhcCCCceEEEeecCCChHHhhHHHHHhhcccceeecccEEEEeecceeee
Q 037238 60 PPPRFAYLISGSVGDGNMIKRTLLA----LYHPNNVYVVHLDRASSESERLDLQNFVNGFHLFNKFSNVKMITKANLVTY 135 (410)
Q Consensus 60 ~~~kiAYLI~~hk~d~~~l~RLL~a----Ly~p~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~w 135 (410)
+.|+++.+|-+|+ +.+.+.++|+. ++.|+-.++|=.|. ++++-.+.+++.. ..+|||+++..+. -
T Consensus 64 ~~p~vaIlIPA~N-E~~vI~~~l~s~L~~ldY~~~eIiVv~d~-ndd~T~~~v~~l~------~~~p~v~~vv~~~---~ 132 (504)
T PRK14716 64 PEKRIAIFVPAWR-EADVIGRMLEHNLATLDYENYRIFVGTYP-NDPATLREVDRLA------ARYPRVHLVIVPH---D 132 (504)
T ss_pred CCCceEEEEeccC-chhHHHHHHHHHHHcCCCCCeEEEEEECC-CChhHHHHHHHHH------HHCCCeEEEEeCC---C
Confidence 3788999999998 77777777764 33454344444443 3333333343322 3578888654222 1
Q ss_pred cCchhHHhhHHHHHHHhh----cCCCcceEEecCCCCCCc
Q 037238 136 RGPTMVANTLHAAAVLLR----EGGDWDWFINLSASDYPL 171 (410)
Q Consensus 136 gg~S~V~AtL~~~~~lL~----~~~~wd~finLSgsDyPL 171 (410)
|+.+-..|--.+++.+.. .+.++|+++.+-+.|.|=
T Consensus 133 gp~~Ka~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~v~ 172 (504)
T PRK14716 133 GPTSKADCLNWIYQAIFAFERERGIRFAIIVLHDAEDVIH 172 (504)
T ss_pred CCCCHHHHHHHHHHHHHHhhhhcCCCcCEEEEEcCCCCcC
Confidence 333555554445554432 234689999999888743
No 15
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=77.02 E-value=15 Score=36.21 Aligned_cols=91 Identities=21% Similarity=0.273 Sum_probs=60.1
Q ss_pred CCceEEEeeccCCChHHHHHHHHHhhcCCCceE--EEeecCCChHHhhHHHHHhhcccceeecccEEEEeecceeeecCc
Q 037238 61 PPRFAYLISGSVGDGNMIKRTLLALYHPNNVYV--VHLDRASSESERLDLQNFVNGFHLFNKFSNVKMITKANLVTYRGP 138 (410)
Q Consensus 61 ~~kiAYLI~~hk~d~~~l~RLL~aLy~p~n~y~--IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~ 138 (410)
.++++-+|..|. ..+.+...|..|........ |=+|-.+++.....++.. .+++|.++.......|+|-
T Consensus 2 ~~~i~~iiv~yn-~~~~l~~~l~~l~~~~~~~~~iv~vDn~s~d~~~~~~~~~--------~~~~v~~i~~~~NlG~agg 72 (305)
T COG1216 2 MPKISIIIVTYN-RGEDLVECLASLAAQTYPDDVIVVVDNGSTDGSLEALKAR--------FFPNVRLIENGENLGFAGG 72 (305)
T ss_pred CcceEEEEEecC-CHHHHHHHHHHHhcCCCCCcEEEEccCCCCCCCHHHHHhh--------cCCcEEEEEcCCCccchhh
Confidence 367888888886 78888888888874333333 345877776666555431 1789999988777777655
Q ss_pred hhHHhhHHHHHHHhhcCCCcceEEecCCCC
Q 037238 139 TMVANTLHAAAVLLREGGDWDWFINLSASD 168 (410)
Q Consensus 139 S~V~AtL~~~~~lL~~~~~wd~finLSgsD 168 (410)
-. .+++.++..+. +| +++-..|
T Consensus 73 ~n-----~g~~~a~~~~~--~~-~l~LN~D 94 (305)
T COG1216 73 FN-----RGIKYALAKGD--DY-VLLLNPD 94 (305)
T ss_pred hh-----HHHHHHhcCCC--cE-EEEEcCC
Confidence 43 57777776432 24 4455555
No 16
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=76.52 E-value=8.3 Score=35.34 Aligned_cols=115 Identities=19% Similarity=0.254 Sum_probs=54.7
Q ss_pred CceEEEeeccCCChHHHHHHHHHhhc---CCCceEEEeecCCChHHhhHHHHHhhcccceeecccEEEEeecceeeecCc
Q 037238 62 PRFAYLISGSVGDGNMIKRTLLALYH---PNNVYVVHLDRASSESERLDLQNFVNGFHLFNKFSNVKMITKANLVTYRGP 138 (410)
Q Consensus 62 ~kiAYLI~~hk~d~~~l~RLL~aLy~---p~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~ 138 (410)
|+++.+|.+++ +.+.+.++|+++-+ |+-.++| +|..++++..+.+++..+..+ ...|+++..... .|.
T Consensus 1 P~v~Vvip~~~-~~~~l~~~l~sl~~~~~~~~~v~v-vd~~~~~~~~~~~~~~~~~~~----~~~v~vi~~~~~---~g~ 71 (228)
T PF13641_consen 1 PRVSVVIPAYN-EDDVLRRCLESLLAQDYPRLEVVV-VDDGSDDETAEILRALAARYP----RVRVRVIRRPRN---PGP 71 (228)
T ss_dssp --EEEE--BSS--HHHHHHHHHHHTTSHHHTEEEEE-EEE-SSS-GCTTHHHHHHTTG----G-GEEEEE-------HHH
T ss_pred CEEEEEEEecC-CHHHHHHHHHHHHcCCCCCeEEEE-EECCCChHHHHHHHHHHHHcC----CCceEEeecCCC---CCc
Confidence 56899999987 77899999998853 4434334 565555554455554443221 113576643211 122
Q ss_pred -hhHHhhHHHHHHHhhcCCCcceEEecCCCCCCccccchhhHHhhcC-CCCccccc
Q 037238 139 -TMVANTLHAAAVLLREGGDWDWFINLSASDYPLVTQDDLLDAFSYL-PRDLNFID 192 (410)
Q Consensus 139 -S~V~AtL~~~~~lL~~~~~wd~finLSgsDyPLkt~~~i~~~fs~~-~~~~NFIe 192 (410)
+...|..++++.+ +.||++.|-+.+.| ..+-|...+... ..+...+.
T Consensus 72 ~~k~~a~n~~~~~~-----~~d~i~~lD~D~~~--~p~~l~~~~~~~~~~~~~~v~ 120 (228)
T PF13641_consen 72 GGKARALNEALAAA-----RGDYILFLDDDTVL--DPDWLERLLAAFADPGVGAVG 120 (228)
T ss_dssp HHHHHHHHHHHHH--------SEEEEE-SSEEE---CHHHHHHHHHHHBSS--EEE
T ss_pred chHHHHHHHHHHhc-----CCCEEEEECCCcEE--CHHHHHHHHHHHHhCCCCeEe
Confidence 3344444444442 37899999888887 554454443322 23444443
No 17
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=76.47 E-value=16 Score=33.86 Aligned_cols=103 Identities=17% Similarity=0.189 Sum_probs=57.4
Q ss_pred CceEEEeeccCCChHHHHHHHHHhhc---CC-CceEEEeecCCChHHhhHHHHHhhcccceeecccEEEEeecceeeecC
Q 037238 62 PRFAYLISGSVGDGNMIKRTLLALYH---PN-NVYVVHLDRASSESERLDLQNFVNGFHLFNKFSNVKMITKANLVTYRG 137 (410)
Q Consensus 62 ~kiAYLI~~hk~d~~~l~RLL~aLy~---p~-n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg 137 (410)
|++..+|.+|+ ..+.+.++|++|.. |. ..-+|=+|. +++.....+++..+..+ ....+|.++...... |
T Consensus 1 p~vSViIp~yN-e~~~l~~~L~sl~~q~~~~~~~eIiVvD~-s~D~t~~~~~~~~~~~~--~~~~~i~~~~~~~~~---G 73 (232)
T cd06437 1 PMVTVQLPVFN-EKYVVERLIEAACALDYPKDRLEIQVLDD-STDETVRLAREIVEEYA--AQGVNIKHVRRADRT---G 73 (232)
T ss_pred CceEEEEecCC-cHHHHHHHHHHHHhcCCCccceEEEEEEC-CCCcHHHHHHHHHHHHh--hcCCceEEEECCCCC---C
Confidence 46888999997 78899999999853 33 233455786 66554555554332111 112456655433222 2
Q ss_pred chhHHhhHHHHHHHhhcCCCcceEEecCCCCCCccccchhhH
Q 037238 138 PTMVANTLHAAAVLLREGGDWDWFINLSASDYPLVTQDDLLD 179 (410)
Q Consensus 138 ~S~V~AtL~~~~~lL~~~~~wd~finLSgsDyPLkt~~~i~~ 179 (410)
+ ...| ++ ..++. .+-||++++-+.+++ ..+-|..
T Consensus 74 ~-k~~a-~n---~g~~~-a~~~~i~~~DaD~~~--~~~~l~~ 107 (232)
T cd06437 74 Y-KAGA-LA---EGMKV-AKGEYVAIFDADFVP--PPDFLQK 107 (232)
T ss_pred C-chHH-HH---HHHHh-CCCCEEEEEcCCCCC--ChHHHHH
Confidence 2 1111 21 22222 246999999998886 4444544
No 18
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=75.68 E-value=17 Score=36.40 Aligned_cols=95 Identities=13% Similarity=0.180 Sum_probs=53.8
Q ss_pred CCceEEEeeccCCCh--HHHHHHHHHh-----------hcCCCceEEEee--cCCChHHhhHHHHHhhccccee---ecc
Q 037238 61 PPRFAYLISGSVGDG--NMIKRTLLAL-----------YHPNNVYVVHLD--RASSESERLDLQNFVNGFHLFN---KFS 122 (410)
Q Consensus 61 ~~kiAYLI~~hk~d~--~~l~RLL~aL-----------y~p~n~y~IHlD--~ka~~~~~~~l~~~v~~~~~~~---~~~ 122 (410)
...+|||+.|..|-. .....+.+++ .||.|+.+ +| .+. . ..++++...+..+... ...
T Consensus 16 ~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~--~d~~g~~-i-~vd~Ir~l~~~~~~~~~~~~~~ 91 (299)
T PRK07132 16 KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIIL--FDIFDKD-L-SKSEFLSAINKLYFSSFVQSQK 91 (299)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEE--eccCCCc-C-CHHHHHHHHHHhccCCcccCCc
Confidence 478999999886542 2334455555 36666544 47 322 1 1233433333333322 244
Q ss_pred cEEEEeecceeeecCchhHHhhHHHHHHHhhcCCCcceEEecCC
Q 037238 123 NVKMITKANLVTYRGPTMVANTLHAAAVLLREGGDWDWFINLSA 166 (410)
Q Consensus 123 NV~vv~~~~~V~wgg~S~V~AtL~~~~~lL~~~~~wd~finLSg 166 (410)
.|.++.+. -.|-.+..+++--.+.+.++..+||+++.
T Consensus 92 KvvII~~~-------e~m~~~a~NaLLK~LEEPp~~t~~il~~~ 128 (299)
T PRK07132 92 KILIIKNI-------EKTSNSLLNALLKTIEEPPKDTYFLLTTK 128 (299)
T ss_pred eEEEEecc-------cccCHHHHHHHHHHhhCCCCCeEEEEEeC
Confidence 67777654 24444445555556677889999999886
No 19
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=75.03 E-value=29 Score=31.64 Aligned_cols=104 Identities=21% Similarity=0.219 Sum_probs=57.3
Q ss_pred CceEEEeeccCCChHHHHHHHHHhhc---CCC-ceEEEeecCCChHHhhHHHHHhhcccceeecccEEEEeecceeeecC
Q 037238 62 PRFAYLISGSVGDGNMIKRTLLALYH---PNN-VYVVHLDRASSESERLDLQNFVNGFHLFNKFSNVKMITKANLVTYRG 137 (410)
Q Consensus 62 ~kiAYLI~~hk~d~~~l~RLL~aLy~---p~n-~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg 137 (410)
|++..+|-+++.+.+.+.++|+.+-. |.. .=+|=+|-.+++...+.++.+.. . .++.++... ..+|+
T Consensus 1 p~vsviip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~------~-~~~~~~~~~--~~~~~ 71 (234)
T cd06421 1 PTVDVFIPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALAAELGV------E-YGYRYLTRP--DNRHA 71 (234)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHHHHhhc------c-cCceEEEeC--CCCCC
Confidence 46788888987445778888887743 331 22444676666554444443211 1 144554332 23333
Q ss_pred chhHHhhHHHHHHHhhcCCCcceEEecCCCCCCccccchhhHHhhc
Q 037238 138 PTMVANTLHAAAVLLREGGDWDWFINLSASDYPLVTQDDLLDAFSY 183 (410)
Q Consensus 138 ~S~V~AtL~~~~~lL~~~~~wd~finLSgsDyPLkt~~~i~~~fs~ 183 (410)
.. .+.-.|++.+ +-||++.|.+.|++ +.+.|...++.
T Consensus 72 ~~--~~~n~~~~~a-----~~d~i~~lD~D~~~--~~~~l~~l~~~ 108 (234)
T cd06421 72 KA--GNLNNALAHT-----TGDFVAILDADHVP--TPDFLRRTLGY 108 (234)
T ss_pred cH--HHHHHHHHhC-----CCCEEEEEccccCc--CccHHHHHHHH
Confidence 21 1112233322 46999999999998 45666555543
No 20
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=72.12 E-value=53 Score=36.81 Aligned_cols=108 Identities=19% Similarity=0.217 Sum_probs=59.0
Q ss_pred CCCCceEEEeeccCCChHHHHHHHHHh---hcCC-CceEEEeecCCChH--------------HhhHHHHHhhcccceee
Q 037238 59 PPPPRFAYLISGSVGDGNMIKRTLLAL---YHPN-NVYVVHLDRASSES--------------ERLDLQNFVNGFHLFNK 120 (410)
Q Consensus 59 ~~~~kiAYLI~~hk~d~~~l~RLL~aL---y~p~-n~y~IHlD~ka~~~--------------~~~~l~~~v~~~~~~~~ 120 (410)
+..|+++.+|-+|+.+.+.++++++++ +.|. +.=++=+|..+++. .+.++++..+
T Consensus 128 ~~~P~VsViIP~yNE~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~~------- 200 (713)
T TIGR03030 128 EEWPTVDVFIPTYNEDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFCR------- 200 (713)
T ss_pred ccCCeeEEEEcCCCCCHHHHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHHH-------
Confidence 345789999999986556666777664 3463 33345556654332 2344444332
Q ss_pred cccEEEEeecceeeecCchhHHhhHHHHHHHhhcCCCcceEEecCCCCCCcccc-chhhHHhh
Q 037238 121 FSNVKMITKANLVTYRGPTMVANTLHAAAVLLREGGDWDWFINLSASDYPLVTQ-DDLLDAFS 182 (410)
Q Consensus 121 ~~NV~vv~~~~~V~wgg~S~V~AtL~~~~~lL~~~~~wd~finLSgsDyPLkt~-~~i~~~fs 182 (410)
..+|+++..... .++-. . ++..+++.. +-||++.+-+.+.|-... .++..+|.
T Consensus 201 ~~~v~yi~r~~n--~~~KA--g----nLN~al~~a-~gd~Il~lDAD~v~~pd~L~~~v~~f~ 254 (713)
T TIGR03030 201 KLGVNYITRPRN--VHAKA--G----NINNALKHT-DGELILIFDADHVPTRDFLQRTVGWFV 254 (713)
T ss_pred HcCcEEEECCCC--CCCCh--H----HHHHHHHhc-CCCEEEEECCCCCcChhHHHHHHHHHH
Confidence 236777754332 22211 1 122333322 348999999999985332 33444453
No 21
>PRK10063 putative glycosyl transferase; Provisional
Probab=71.69 E-value=45 Score=31.94 Aligned_cols=93 Identities=15% Similarity=0.116 Sum_probs=59.0
Q ss_pred CceEEEeeccCCChHHHHHHHHHhhc-----CCCceEEEeecCCChHHhhHHHHHhhcccceeecccEEEEeecceeeec
Q 037238 62 PRFAYLISGSVGDGNMIKRTLLALYH-----PNNVYVVHLDRASSESERLDLQNFVNGFHLFNKFSNVKMITKANLVTYR 136 (410)
Q Consensus 62 ~kiAYLI~~hk~d~~~l~RLL~aLy~-----p~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wg 136 (410)
|++..+|.+++ ..+.+.++|+.+.. ..+.=+|=+|..|++.-.+-++.+. ...+|+++...+ .
T Consensus 1 ~~vSVIi~~yN-~~~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t~~i~~~~~-------~~~~i~~i~~~~----~ 68 (248)
T PRK10063 1 MLLSVITVAFR-NLEGIVKTHASLRHLAQDPGISFEWIVVDGGSNDGTREFLENLN-------GIFNLRFVSEPD----N 68 (248)
T ss_pred CeEEEEEEeCC-CHHHHHHHHHHHHHHHhCCCCCEEEEEEECcCcccHHHHHHHhc-------ccCCEEEEECCC----C
Confidence 57888899987 78889998888842 2344578889888776544444321 112577775432 2
Q ss_pred CchhHHhhHHHHHHHhhcCCCcceEEecCCCCCCccc
Q 037238 137 GPTMVANTLHAAAVLLREGGDWDWFINLSASDYPLVT 173 (410)
Q Consensus 137 g~S~V~AtL~~~~~lL~~~~~wd~finLSgsDyPLkt 173 (410)
|.. .|--.+++.+ .-+|++.|.+.|.....
T Consensus 69 G~~--~A~N~Gi~~a-----~g~~v~~ld~DD~~~~~ 98 (248)
T PRK10063 69 GIY--DAMNKGIAMA-----QGRFALFLNSGDIFHQD 98 (248)
T ss_pred CHH--HHHHHHHHHc-----CCCEEEEEeCCcccCcC
Confidence 322 2333344443 23899999999998653
No 22
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=71.42 E-value=47 Score=29.87 Aligned_cols=104 Identities=13% Similarity=0.149 Sum_probs=57.2
Q ss_pred CceEEEeeccCCChHHHHHHHHHhhc---CCCceEEEeecCCChHHhhHHHHHhhcccceeecc--cEEEEeecceeeec
Q 037238 62 PRFAYLISGSVGDGNMIKRTLLALYH---PNNVYVVHLDRASSESERLDLQNFVNGFHLFNKFS--NVKMITKANLVTYR 136 (410)
Q Consensus 62 ~kiAYLI~~hk~d~~~l~RLL~aLy~---p~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~--NV~vv~~~~~V~wg 136 (410)
|++..+|-+++ +.+.+.++|+.|.. |. .=+|=+|-.+++...+.++.+.+ .++ ++.++.....+ |
T Consensus 1 p~vsviip~~n-~~~~l~~~L~sl~~q~~~~-~eiivVdd~s~d~t~~~~~~~~~------~~~~~~~~~~~~~~~~--g 70 (196)
T cd02520 1 PGVSILKPLCG-VDPNLYENLESFFQQDYPK-YEILFCVQDEDDPAIPVVRKLIA------KYPNVDARLLIGGEKV--G 70 (196)
T ss_pred CCeEEEEecCC-CCccHHHHHHHHHhccCCC-eEEEEEeCCCcchHHHHHHHHHH------HCCCCcEEEEecCCcC--C
Confidence 45788999997 56678898888853 44 33445666666555454554433 233 35555433222 2
Q ss_pred CchhHHhhHHHHHHHhhcCCCcceEEecCCCCCCccccchhhHHhh
Q 037238 137 GPTMVANTLHAAAVLLREGGDWDWFINLSASDYPLVTQDDLLDAFS 182 (410)
Q Consensus 137 g~S~V~AtL~~~~~lL~~~~~wd~finLSgsDyPLkt~~~i~~~fs 182 (410)
+.....+ + ..+++. ..-||++++-+.+.+ +.+.|.+.+.
T Consensus 71 ~~~~~~~-~---n~g~~~-a~~d~i~~~D~D~~~--~~~~l~~l~~ 109 (196)
T cd02520 71 INPKVNN-L---IKGYEE-ARYDILVISDSDISV--PPDYLRRMVA 109 (196)
T ss_pred CCHhHHH-H---HHHHHh-CCCCEEEEECCCceE--ChhHHHHHHH
Confidence 2222222 2 222222 246899988777653 5666655554
No 23
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=70.71 E-value=32 Score=30.04 Aligned_cols=97 Identities=11% Similarity=0.098 Sum_probs=56.6
Q ss_pred EeeccCCChHHHHHHHHHhhcC----CCceEEEeecCCChHHhhHHHHHhhcccceeecccEEEEeecceeeecCchhHH
Q 037238 67 LISGSVGDGNMIKRTLLALYHP----NNVYVVHLDRASSESERLDLQNFVNGFHLFNKFSNVKMITKANLVTYRGPTMVA 142 (410)
Q Consensus 67 LI~~hk~d~~~l~RLL~aLy~p----~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~ 142 (410)
+|.+++ +.+.+.++|..+..- .+.=+|=+|..+++...+.++.+.. ..+.++++..... .+...
T Consensus 2 ii~~~n-~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~~~~------~~~~~~~~~~~~n-----~G~~~ 69 (185)
T cd04179 2 VIPAYN-EEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARELAA------RVPRVRVIRLSRN-----FGKGA 69 (185)
T ss_pred eecccC-hHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHHHHH------hCCCeEEEEccCC-----CCccH
Confidence 466776 778888888887633 2344566776666555555554432 3445555533222 22334
Q ss_pred hhHHHHHHHhhcCCCcceEEecCCCCCCccccchhhHHhh
Q 037238 143 NTLHAAAVLLREGGDWDWFINLSASDYPLVTQDDLLDAFS 182 (410)
Q Consensus 143 AtL~~~~~lL~~~~~wd~finLSgsDyPLkt~~~i~~~fs 182 (410)
|...+++.+ .. ||++.|.+.|.+ +.+.+...++
T Consensus 70 a~n~g~~~a----~g-d~i~~lD~D~~~--~~~~l~~l~~ 102 (185)
T cd04179 70 AVRAGFKAA----RG-DIVVTMDADLQH--PPEDIPKLLE 102 (185)
T ss_pred HHHHHHHHh----cC-CEEEEEeCCCCC--CHHHHHHHHH
Confidence 444455443 22 899999988875 5566665555
No 24
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=67.62 E-value=22 Score=29.84 Aligned_cols=100 Identities=15% Similarity=0.218 Sum_probs=60.4
Q ss_pred EeeccCCChHHHHHHHHHhhcC--CCceEEEeecCCChHHhhHHHHHhhcccceeecccEEEEeecceeeecCchhHHhh
Q 037238 67 LISGSVGDGNMIKRTLLALYHP--NNVYVVHLDRASSESERLDLQNFVNGFHLFNKFSNVKMITKANLVTYRGPTMVANT 144 (410)
Q Consensus 67 LI~~hk~d~~~l~RLL~aLy~p--~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~At 144 (410)
+|.+++ ..+.+.++|..|-.. .+.-+|=+|-.++++..+.++.+.+ ...+++++..... ...-.+-
T Consensus 3 vip~~n-~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~------~~~~i~~i~~~~n-----~g~~~~~ 70 (169)
T PF00535_consen 3 VIPTYN-EAEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAE------SDPNIRYIRNPEN-----LGFSAAR 70 (169)
T ss_dssp EEEESS--TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHC------CSTTEEEEEHCCC-----SHHHHHH
T ss_pred EEEeeC-CHHHHHHHHHHHhhccCCCEEEEEeccccccccccccccccc------ccccccccccccc-----ccccccc
Confidence 566766 678899998877532 2333455666666665666665432 3568898865432 2444455
Q ss_pred HHHHHHHhhcCCCcceEEecCCCCCCccc-cchhhHHhhc
Q 037238 145 LHAAAVLLREGGDWDWFINLSASDYPLVT-QDDLLDAFSY 183 (410)
Q Consensus 145 L~~~~~lL~~~~~wd~finLSgsDyPLkt-~~~i~~~fs~ 183 (410)
..+++.+. -+|++.+-+.|++... .+++.+.+..
T Consensus 71 n~~~~~a~-----~~~i~~ld~D~~~~~~~l~~l~~~~~~ 105 (169)
T PF00535_consen 71 NRGIKHAK-----GEYILFLDDDDIISPDWLEELVEALEK 105 (169)
T ss_dssp HHHHHH-------SSEEEEEETTEEE-TTHHHHHHHHHHH
T ss_pred cccccccc-----eeEEEEeCCCceEcHHHHHHHHHHHHh
Confidence 55555543 2499999999988776 6666666665
No 25
>PRK10073 putative glycosyl transferase; Provisional
Probab=66.93 E-value=52 Score=33.00 Aligned_cols=93 Identities=14% Similarity=0.230 Sum_probs=60.1
Q ss_pred CCceEEEeeccCCChHHHHHHHHHhhcC--CCceEEEeecCCChHHhhHHHHHhhcccceeecccEEEEeecceeeecCc
Q 037238 61 PPRFAYLISGSVGDGNMIKRTLLALYHP--NNVYVVHLDRASSESERLDLQNFVNGFHLFNKFSNVKMITKANLVTYRGP 138 (410)
Q Consensus 61 ~~kiAYLI~~hk~d~~~l~RLL~aLy~p--~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~ 138 (410)
.|.+..+|-+++ ..+.|.+.|..|... .+.=+|=||..|++...+-++++.+ ..++|.++.+.+ +|.
T Consensus 5 ~p~vSVIIP~yN-~~~~L~~~l~Sl~~Qt~~~~EIIiVdDgStD~t~~i~~~~~~------~~~~i~vi~~~n----~G~ 73 (328)
T PRK10073 5 TPKLSIIIPLYN-AGKDFRAFMESLIAQTWTALEIIIVNDGSTDNSVEIAKHYAE------NYPHVRLLHQAN----AGV 73 (328)
T ss_pred CCeEEEEEeccC-CHHHHHHHHHHHHhCCCCCeEEEEEeCCCCccHHHHHHHHHh------hCCCEEEEECCC----CCh
Confidence 467999999987 568899999988642 2444566676666655554554432 457899886533 343
Q ss_pred hhHHhhHHHHHHHhhcCCCcceEEecCCCCCCc
Q 037238 139 TMVANTLHAAAVLLREGGDWDWFINLSASDYPL 171 (410)
Q Consensus 139 S~V~AtL~~~~~lL~~~~~wd~finLSgsDyPL 171 (410)
..|--.+++.+ .=+|+..|-+.|+.-
T Consensus 74 --~~arN~gl~~a-----~g~yi~flD~DD~~~ 99 (328)
T PRK10073 74 --SVARNTGLAVA-----TGKYVAFPDADDVVY 99 (328)
T ss_pred --HHHHHHHHHhC-----CCCEEEEECCCCccC
Confidence 33333344443 238999999999954
No 26
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=66.85 E-value=29 Score=35.19 Aligned_cols=82 Identities=15% Similarity=0.086 Sum_probs=47.8
Q ss_pred HHHHHHHhhcCCCceEEEeecCC-ChHHhhHHHHHhhcccceeecccEEEEeecceeeecCchhHHhhHHHHHHHhhcCC
Q 037238 78 IKRTLLALYHPNNVYVVHLDRAS-SESERLDLQNFVNGFHLFNKFSNVKMITKANLVTYRGPTMVANTLHAAAVLLREGG 156 (410)
Q Consensus 78 l~RLL~aLy~p~n~y~IHlD~ka-~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~AtL~~~~~lL~~~~ 156 (410)
-.|++.+-.||+-+++-..|.+. +.++-.++.+.+...|... .-.|.++.+.+ .|-.+.-+++--.|.+.+
T Consensus 64 sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~~~~~g-~~KV~iI~~a~-------~m~~~AaNaLLKtLEEPp 135 (325)
T PRK06871 64 SCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQHAQQG-GNKVVYIQGAE-------RLTEAAANALLKTLEEPR 135 (325)
T ss_pred HHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhhccccC-CceEEEEechh-------hhCHHHHHHHHHHhcCCC
Confidence 34556666788855443334332 4455555655554444222 22566665544 555666666666667788
Q ss_pred CcceEEecCCC
Q 037238 157 DWDWFINLSAS 167 (410)
Q Consensus 157 ~wd~finLSgs 167 (410)
+..+||++|.+
T Consensus 136 ~~~~fiL~t~~ 146 (325)
T PRK06871 136 PNTYFLLQADL 146 (325)
T ss_pred CCeEEEEEECC
Confidence 99999999865
No 27
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=65.50 E-value=41 Score=32.25 Aligned_cols=85 Identities=11% Similarity=0.054 Sum_probs=54.8
Q ss_pred cCCChHHHHHHHHHhhcCCCceEEEeecCCChHHhhHHHHHhhcccceeecccEEEEeecceeeecCchhHHhhHHHHHH
Q 037238 71 SVGDGNMIKRTLLALYHPNNVYVVHLDRASSESERLDLQNFVNGFHLFNKFSNVKMITKANLVTYRGPTMVANTLHAAAV 150 (410)
Q Consensus 71 hk~d~~~l~RLL~aLy~p~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~AtL~~~~~ 150 (410)
++.+.+.|+++|.+|.. ++..+|=||-.++.. +.++..+ ...++|+++...... ..-.|--.+++.
T Consensus 3 yn~~~~~l~~~l~sl~~-q~~~iiVVDN~S~~~--~~~~~~~------~~~~~i~~i~~~~N~-----G~a~a~N~Gi~~ 68 (281)
T TIGR01556 3 FNPDLEHLGELITSLPK-QVDRIIAVDNSPHSD--QPLKNAR------LRGQKIALIHLGDNQ-----GIAGAQNQGLDA 68 (281)
T ss_pred cCccHHHHHHHHHHHHh-cCCEEEEEECcCCCc--HhHHHHh------ccCCCeEEEECCCCc-----chHHHHHHHHHH
Confidence 33356899999999985 566788899876433 2222222 245789988643322 222244446666
Q ss_pred HhhcCCCcceEEecCCCCCCc
Q 037238 151 LLREGGDWDWFINLSASDYPL 171 (410)
Q Consensus 151 lL~~~~~wd~finLSgsDyPL 171 (410)
++. .+.||+++|-..+.|-
T Consensus 69 a~~--~~~d~i~~lD~D~~~~ 87 (281)
T TIGR01556 69 SFR--RGVQGVLLLDQDSRPG 87 (281)
T ss_pred HHH--CCCCEEEEECCCCCCC
Confidence 654 3579999999999985
No 28
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=63.68 E-value=1.1e+02 Score=28.51 Aligned_cols=107 Identities=7% Similarity=0.106 Sum_probs=59.8
Q ss_pred CCCCceEEEeeccCCChHHHHHHHHHhh----cCCCceEEEeecCCChHHhhHHHHHhhcccceeecccEEEEeecceee
Q 037238 59 PPPPRFAYLISGSVGDGNMIKRTLLALY----HPNNVYVVHLDRASSESERLDLQNFVNGFHLFNKFSNVKMITKANLVT 134 (410)
Q Consensus 59 ~~~~kiAYLI~~hk~d~~~l~RLL~aLy----~p~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~ 134 (410)
+..|++..+|-+++ +.+.+..++..+. .+.+.=+|-+|-.|++.-.+.++++.+.. ...+|.++....
T Consensus 6 ~~~~~vsVvIp~yn-e~~~l~~~l~~l~~~~~~~~~~eiivvDdgS~D~t~~i~~~~~~~~----~~~~v~~~~~~~--- 77 (243)
T PLN02726 6 EGAMKYSIIVPTYN-ERLNIALIVYLIFKALQDVKDFEIIVVDDGSPDGTQDVVKQLQKVY----GEDRILLRPRPG--- 77 (243)
T ss_pred CCCceEEEEEccCC-chhhHHHHHHHHHHHhccCCCeEEEEEeCCCCCCHHHHHHHHHHhc----CCCcEEEEecCC---
Confidence 34578999999987 6777777766553 23244467788777665544444332210 123566654221
Q ss_pred ecCchhHHhhHHHHHHHhhcCCCcceEEecCCCCCCccccchhhHHhh
Q 037238 135 YRGPTMVANTLHAAAVLLREGGDWDWFINLSASDYPLVTQDDLLDAFS 182 (410)
Q Consensus 135 wgg~S~V~AtL~~~~~lL~~~~~wd~finLSgsDyPLkt~~~i~~~fs 182 (410)
-.|.+ .|-..+++.+ .-||++.+.+.+.+ +.+.|...+.
T Consensus 78 n~G~~--~a~n~g~~~a-----~g~~i~~lD~D~~~--~~~~l~~l~~ 116 (243)
T PLN02726 78 KLGLG--TAYIHGLKHA-----SGDFVVIMDADLSH--HPKYLPSFIK 116 (243)
T ss_pred CCCHH--HHHHHHHHHc-----CCCEEEEEcCCCCC--CHHHHHHHHH
Confidence 12322 2333344332 24799999988873 5555555443
No 29
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=63.66 E-value=68 Score=29.29 Aligned_cols=98 Identities=12% Similarity=0.098 Sum_probs=58.3
Q ss_pred eEEEeeccCCChHHHHHHHHHhhcCCCceEEEeecCCChHHhhHHHHHhhcccceeecccEEEEeecceeeecCchhHHh
Q 037238 64 FAYLISGSVGDGNMIKRTLLALYHPNNVYVVHLDRASSESERLDLQNFVNGFHLFNKFSNVKMITKANLVTYRGPTMVAN 143 (410)
Q Consensus 64 iAYLI~~hk~d~~~l~RLL~aLy~p~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~A 143 (410)
+..+|.++++..+.+.++|+.+....+.=+|=+|-.++++....+... ...+.+.++... ++|. ..|
T Consensus 2 isVvIp~~ne~~~~l~~~l~sl~~q~~~eiivvdd~s~d~~~~~l~~~-------~~~~~~~v~~~~----~~g~--~~a 68 (235)
T cd06434 2 VTVIIPVYDEDPDVFRECLRSILRQKPLEIIVVTDGDDEPYLSILSQT-------VKYGGIFVITVP----HPGK--RRA 68 (235)
T ss_pred eEEEEeecCCChHHHHHHHHHHHhCCCCEEEEEeCCCChHHHHHHHhh-------ccCCcEEEEecC----CCCh--HHH
Confidence 567888987333999999999986433335556666655544444221 234566666432 3443 233
Q ss_pred hHHHHHHHhhcCCCcceEEecCCCCCCccccchhhHHh
Q 037238 144 TLHAAAVLLREGGDWDWFINLSASDYPLVTQDDLLDAF 181 (410)
Q Consensus 144 tL~~~~~lL~~~~~wd~finLSgsDyPLkt~~~i~~~f 181 (410)
--.+++.+ +-||++.|-+.+.|-.. .|...+
T Consensus 69 ~n~g~~~a-----~~d~v~~lD~D~~~~~~--~l~~l~ 99 (235)
T cd06434 69 LAEGIRHV-----TTDIVVLLDSDTVWPPN--ALPEML 99 (235)
T ss_pred HHHHHHHh-----CCCEEEEECCCceeChh--HHHHHH
Confidence 33344433 46999999999987643 344443
No 30
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=63.23 E-value=41 Score=33.54 Aligned_cols=57 Identities=14% Similarity=0.070 Sum_probs=30.0
Q ss_pred HHhhHHHHHhhcccceeecccEEEEeecceeeecCchhHHhhHHHHHHHhhcCCCcceEEecCCC
Q 037238 103 SERLDLQNFVNGFHLFNKFSNVKMITKANLVTYRGPTMVANTLHAAAVLLREGGDWDWFINLSAS 167 (410)
Q Consensus 103 ~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~AtL~~~~~lL~~~~~wd~finLSgs 167 (410)
++-.++...+...|..+ .-.|.||...+ .|-.+.-+++--.|.+.++..+||+++.+
T Consensus 87 dqIR~l~~~~~~~p~~~-~~kV~II~~ad-------~m~~~AaNaLLKtLEEPp~~t~~iL~t~~ 143 (290)
T PRK07276 87 DTIRELVKNFSQSGYEG-KQQVFIIKDAD-------KMHVNAANSLLKVIEEPQSEIYIFLLTND 143 (290)
T ss_pred HHHHHHHHHHhhCcccC-CcEEEEeehhh-------hcCHHHHHHHHHHhcCCCCCeEEEEEECC
Confidence 44344444443334322 23566665444 44444445444455666777888888755
No 31
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=62.72 E-value=68 Score=28.14 Aligned_cols=97 Identities=12% Similarity=0.087 Sum_probs=50.6
Q ss_pred EeeccCCChHHHHHHHHHhhc-----CCCceEEEeecCCChHHhhHHHHHhhcccceeecccEEEEeecceeeecCchhH
Q 037238 67 LISGSVGDGNMIKRTLLALYH-----PNNVYVVHLDRASSESERLDLQNFVNGFHLFNKFSNVKMITKANLVTYRGPTMV 141 (410)
Q Consensus 67 LI~~hk~d~~~l~RLL~aLy~-----p~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V 141 (410)
+|.+++ ..+.+.++|+.|.. ..+.=+|=+|-.+++.....++.+. ...+||.++.... .. ...
T Consensus 2 iIp~~n-~~~~l~~~l~sl~~~~~~~~~~~eiivvdd~s~d~t~~~~~~~~------~~~~~i~~i~~~~--n~---G~~ 69 (181)
T cd04187 2 VVPVYN-EEENLPELYERLKAVLESLGYDYEIIFVDDGSTDRTLEILRELA------ARDPRVKVIRLSR--NF---GQQ 69 (181)
T ss_pred EEeecC-chhhHHHHHHHHHHHHHhcCCCeEEEEEeCCCCccHHHHHHHHH------hhCCCEEEEEecC--CC---CcH
Confidence 466775 67788888776631 1122244467766655444444332 2456888875322 22 223
Q ss_pred HhhHHHHHHHhhcCCCcceEEecCCCCCCccccchhhHHhh
Q 037238 142 ANTLHAAAVLLREGGDWDWFINLSASDYPLVTQDDLLDAFS 182 (410)
Q Consensus 142 ~AtL~~~~~lL~~~~~wd~finLSgsDyPLkt~~~i~~~fs 182 (410)
.|...+++.+ . -||++.+.+.+. + +.+.+...++
T Consensus 70 ~a~n~g~~~a----~-~d~i~~~D~D~~-~-~~~~l~~l~~ 103 (181)
T cd04187 70 AALLAGLDHA----R-GDAVITMDADLQ-D-PPELIPEMLA 103 (181)
T ss_pred HHHHHHHHhc----C-CCEEEEEeCCCC-C-CHHHHHHHHH
Confidence 3333344433 2 288888776544 4 3444544443
No 32
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=62.49 E-value=32 Score=31.48 Aligned_cols=124 Identities=21% Similarity=0.222 Sum_probs=70.9
Q ss_pred EeeccCCChHHHHHHHHHh----hcCCCceEEEeecCCChHHhhHHHHHhhcccceeecccEEEEeecceeeecCchhHH
Q 037238 67 LISGSVGDGNMIKRTLLAL----YHPNNVYVVHLDRASSESERLDLQNFVNGFHLFNKFSNVKMITKANLVTYRGPTMVA 142 (410)
Q Consensus 67 LI~~hk~d~~~l~RLL~aL----y~p~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~ 142 (410)
+|+++.|-..+|.+|++.+ +.++.+++=.-|. .+.+.-.++.+......-..+.+..+-+.+.. .+.-++++.
T Consensus 3 ~v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~-~S~~k~~~~~~~~~~~~~~~~~~r~r~v~q~~--~~~~~~~l~ 79 (170)
T PF08660_consen 3 VVLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDK-QSRSKAEQLEKSSSKRHKILEIPRAREVGQSY--LTSIFTTLR 79 (170)
T ss_pred EEEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCc-ccHHHHHHHHHhccccceeeccceEEEechhh--HhhHHHHHH
Confidence 4666667789999999999 6554443333333 33322222332211100112334444443321 233468888
Q ss_pred hhHHHHHHHhhcCCCcceEEecCCCCCCccccchhhHHhhcCCCCccccccc
Q 037238 143 NTLHAAAVLLREGGDWDWFINLSASDYPLVTQDDLLDAFSYLPRDLNFIDHT 194 (410)
Q Consensus 143 AtL~~~~~lL~~~~~wd~finLSgsDyPLkt~~~i~~~fs~~~~~~NFIe~~ 194 (410)
+.+.|+..+.+..++ =-+-|=+|.++|+.=..-+...|.-...-.-|||..
T Consensus 80 ~~~~~~~il~r~rPd-vii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES~ 130 (170)
T PF08660_consen 80 AFLQSLRILRRERPD-VIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIESF 130 (170)
T ss_pred HHHHHHHHHHHhCCC-EEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEee
Confidence 899999999886432 234456788999988888877775433335666654
No 33
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=61.15 E-value=49 Score=33.05 Aligned_cols=98 Identities=12% Similarity=0.013 Sum_probs=54.3
Q ss_pred CCceEEEeeccCCChH-----------------HHHHHHHHhhcCCCceEEEeecCC---ChHHhhHHHHHhhcccceee
Q 037238 61 PPRFAYLISGSVGDGN-----------------MIKRTLLALYHPNNVYVVHLDRAS---SESERLDLQNFVNGFHLFNK 120 (410)
Q Consensus 61 ~~kiAYLI~~hk~d~~-----------------~l~RLL~aLy~p~n~y~IHlD~ka---~~~~~~~l~~~v~~~~~~~~ 120 (410)
...+|||+.|..|.+. .-.+.+....|||-++ |--|.+. +.++-.++...+...|..+
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~-i~p~~~~~~I~idqiR~l~~~~~~~p~e~- 94 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHE-FSPQGKGRLHSIETPRAIKKQIWIHPYES- 94 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEE-EecCCCCCcCcHHHHHHHHHHHhhCccCC-
Confidence 4778998887754321 1123344556888444 3334332 3445445555554333221
Q ss_pred cccEEEEeecceeeecCchhHHhhHHHHHHHhhcCCCcceEEecCCC
Q 037238 121 FSNVKMITKANLVTYRGPTMVANTLHAAAVLLREGGDWDWFINLSAS 167 (410)
Q Consensus 121 ~~NV~vv~~~~~V~wgg~S~V~AtL~~~~~lL~~~~~wd~finLSgs 167 (410)
.-.|.++. ..-.|-...-+++--.|.+.++..+||++|.+
T Consensus 95 ~~kv~ii~-------~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~ 134 (290)
T PRK05917 95 PYKIYIIH-------EADRMTLDAISAFLKVLEDPPQHGVIILTSAK 134 (290)
T ss_pred CceEEEEe-------chhhcCHHHHHHHHHHhhcCCCCeEEEEEeCC
Confidence 22454444 34455555555555566778888999998876
No 34
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=61.08 E-value=1.2e+02 Score=26.84 Aligned_cols=93 Identities=13% Similarity=0.151 Sum_probs=53.3
Q ss_pred CceEEEeeccCCChHHHHHHHHHhhcC--CCceEEEeecCCChHHhhHH-HHHhhcccceeecccEEEEeecceeeecCc
Q 037238 62 PRFAYLISGSVGDGNMIKRTLLALYHP--NNVYVVHLDRASSESERLDL-QNFVNGFHLFNKFSNVKMITKANLVTYRGP 138 (410)
Q Consensus 62 ~kiAYLI~~hk~d~~~l~RLL~aLy~p--~n~y~IHlD~ka~~~~~~~l-~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~ 138 (410)
|++..+|.+++++.+.+.++|+.|... .+.-+|=+|..+++..-.++ +.+.. ..+++.++.... ..
T Consensus 1 p~vsiii~~~n~~~~~l~~~l~sl~~q~~~~~eiivvd~gs~d~~~~~~~~~~~~------~~~~~~~~~~~~-----~~ 69 (202)
T cd04184 1 PLISIVMPVYNTPEKYLREAIESVRAQTYPNWELCIADDASTDPEVKRVLKKYAA------QDPRIKVVFREE-----NG 69 (202)
T ss_pred CeEEEEEecccCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCChHHHHHHHHHHh------cCCCEEEEEccc-----CC
Confidence 468889999974338999999988642 12335666666654332222 22221 235677654321 12
Q ss_pred hhHHhhHHHHHHHhhcCCCcceEEecCCCCCC
Q 037238 139 TMVANTLHAAAVLLREGGDWDWFINLSASDYP 170 (410)
Q Consensus 139 S~V~AtL~~~~~lL~~~~~wd~finLSgsDyP 170 (410)
....|--.+++.+ .-||+..+.+.|.+
T Consensus 70 g~~~a~n~g~~~a-----~~d~i~~ld~D~~~ 96 (202)
T cd04184 70 GISAATNSALELA-----TGEFVALLDHDDEL 96 (202)
T ss_pred CHHHHHHHHHHhh-----cCCEEEEECCCCcC
Confidence 2334444445443 24899999888876
No 35
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=60.69 E-value=67 Score=29.38 Aligned_cols=96 Identities=16% Similarity=0.118 Sum_probs=58.9
Q ss_pred EeeccCCChHHHHHHHHHhhcCCCceEEEeecCCChHHhhHHHHHhhcccceeecccEEEEeecceeeecCchhHHhhHH
Q 037238 67 LISGSVGDGNMIKRTLLALYHPNNVYVVHLDRASSESERLDLQNFVNGFHLFNKFSNVKMITKANLVTYRGPTMVANTLH 146 (410)
Q Consensus 67 LI~~hk~d~~~l~RLL~aLy~p~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~AtL~ 146 (410)
+|.++++..+.+.++|+.+... +.-+|=+|..+++.. .....+ ..+++.++..... .| ...|--.
T Consensus 2 vI~~yn~~~~~l~~~l~sl~~q-~~~iivvDn~s~~~~-~~~~~~--------~~~~i~~i~~~~n---~G--~~~a~N~ 66 (237)
T cd02526 2 VVVTYNPDLSKLKELLAALAEQ-VDKVVVVDNSSGNDI-ELRLRL--------NSEKIELIHLGEN---LG--IAKALNI 66 (237)
T ss_pred EEEEecCCHHHHHHHHHHHhcc-CCEEEEEeCCCCccH-HHHhhc--------cCCcEEEEECCCc---ee--hHHhhhH
Confidence 4667764449999999999865 555666887665443 222211 2467887754321 22 2333334
Q ss_pred HHHHHhhcCCCcceEEecCCCCCCccccchhhHHh
Q 037238 147 AAAVLLREGGDWDWFINLSASDYPLVTQDDLLDAF 181 (410)
Q Consensus 147 ~~~~lL~~~~~wd~finLSgsDyPLkt~~~i~~~f 181 (410)
+++.+.. .+.||+++|.+.+++ +.+.|.+.+
T Consensus 67 g~~~a~~--~~~d~v~~lD~D~~~--~~~~l~~l~ 97 (237)
T cd02526 67 GIKAALE--NGADYVLLFDQDSVP--PPDMVEKLL 97 (237)
T ss_pred HHHHHHh--CCCCEEEEECCCCCc--CHhHHHHHH
Confidence 5555433 268999999999996 477776653
No 36
>COG0848 ExbD Biopolymer transport protein [Intracellular trafficking and secretion]
Probab=59.09 E-value=1.3e+02 Score=26.62 Aligned_cols=52 Identities=17% Similarity=0.252 Sum_probs=36.4
Q ss_pred ChHHHHHHHHHhh--cCCCceEEEeecCCChHHhhHHHHHhhcccceeecccEEEEee
Q 037238 74 DGNMIKRTLLALY--HPNNVYVVHLDRASSESERLDLQNFVNGFHLFNKFSNVKMITK 129 (410)
Q Consensus 74 d~~~l~RLL~aLy--~p~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~ 129 (410)
+.+.+...|.++. .++..++|+.|++++.+...++-..++.. .+.+|.++..
T Consensus 80 ~~~~l~~~l~~~~~~~~~~~v~i~aD~~v~y~~vv~vm~~l~~a----G~~~v~L~t~ 133 (137)
T COG0848 80 SLEELEAALAALAKGKKNPRVVIRADKNVKYGTVVKVMDLLKEA----GFKKVGLVTE 133 (137)
T ss_pred cHHHHHHHHHHHhcCCCCceEEEEeCCCCCHHHHHHHHHHHHHc----CCceEEEEec
Confidence 4567777777776 34446899999999988877776666532 4667877643
No 37
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=56.72 E-value=53 Score=32.34 Aligned_cols=35 Identities=11% Similarity=0.084 Sum_probs=23.4
Q ss_pred eeecCchhHHhhHHHHHHHhhcCCCcceEEecCCC
Q 037238 133 VTYRGPTMVANTLHAAAVLLREGGDWDWFINLSAS 167 (410)
Q Consensus 133 V~wgg~S~V~AtL~~~~~lL~~~~~wd~finLSgs 167 (410)
+-|..-.|-.+.-+++=-.|.+.++..+||++|.+
T Consensus 93 II~~ae~m~~~AaNaLLK~LEEPp~~t~fiLit~~ 127 (261)
T PRK05818 93 IIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRN 127 (261)
T ss_pred EeccHhhhCHHHHHHHHHhhcCCCCCeEEEEEECC
Confidence 34444456665566555566778888899988865
No 38
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=56.24 E-value=86 Score=26.34 Aligned_cols=92 Identities=18% Similarity=0.224 Sum_probs=52.6
Q ss_pred EeeccCCChHHHHHHHHHhhcC---CCceEEEeecCCChHHhhHHHHHhhcccceeecccEEEEeecceeeecCchhHHh
Q 037238 67 LISGSVGDGNMIKRTLLALYHP---NNVYVVHLDRASSESERLDLQNFVNGFHLFNKFSNVKMITKANLVTYRGPTMVAN 143 (410)
Q Consensus 67 LI~~hk~d~~~l~RLL~aLy~p---~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~A 143 (410)
+|.+++ ..+.+.++++.|... .-.++| +|..+.+...+.+... .+++.++.... ..+...|
T Consensus 2 ii~~~~-~~~~l~~~l~sl~~~~~~~~~iii-vdd~s~~~~~~~~~~~---------~~~~~~~~~~~-----~~g~~~a 65 (166)
T cd04186 2 IIVNYN-SLEYLKACLDSLLAQTYPDFEVIV-VDNASTDGSVELLREL---------FPEVRLIRNGE-----NLGFGAG 65 (166)
T ss_pred EEEecC-CHHHHHHHHHHHHhccCCCeEEEE-EECCCCchHHHHHHHh---------CCCeEEEecCC-----CcChHHH
Confidence 456665 689999999998642 234444 6655655555555432 23677664322 1222333
Q ss_pred hHHHHHHHhhcCCCcceEEecCCCCCCccccchhhHHh
Q 037238 144 TLHAAAVLLREGGDWDWFINLSASDYPLVTQDDLLDAF 181 (410)
Q Consensus 144 tL~~~~~lL~~~~~wd~finLSgsDyPLkt~~~i~~~f 181 (410)
--.+++.+ +-+|++.+.+.+++ +.+.+....
T Consensus 66 ~n~~~~~~-----~~~~i~~~D~D~~~--~~~~l~~~~ 96 (166)
T cd04186 66 NNQGIREA-----KGDYVLLLNPDTVV--EPGALLELL 96 (166)
T ss_pred hhHHHhhC-----CCCEEEEECCCcEE--CccHHHHHH
Confidence 33444443 46899999988876 344454443
No 39
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=55.87 E-value=1.3e+02 Score=27.95 Aligned_cols=102 Identities=17% Similarity=0.161 Sum_probs=54.9
Q ss_pred CceEEEeeccCCChHHHHHHHHHhhc---CC-CceEEEeecCCChHHhhHHHHHhhcccceeecccEEEEeecceeeecC
Q 037238 62 PRFAYLISGSVGDGNMIKRTLLALYH---PN-NVYVVHLDRASSESERLDLQNFVNGFHLFNKFSNVKMITKANLVTYRG 137 (410)
Q Consensus 62 ~kiAYLI~~hk~d~~~l~RLL~aLy~---p~-n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg 137 (410)
|.+..+|.+++ +.+.+.++|+.+.. |. +.=+|-||..+++...+.++.+. ...++.++-.+. ....|
T Consensus 1 p~vsIiIp~~N-e~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~~~-------~~~~~~i~~~~~-~~~~G 71 (241)
T cd06427 1 PVYTILVPLYK-EAEVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARALR-------LPSIFRVVVVPP-SQPRT 71 (241)
T ss_pred CeEEEEEecCC-cHHHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHHhc-------cCCCeeEEEecC-CCCCc
Confidence 46888999997 67899999998853 32 22355667666655444444321 112333332111 12223
Q ss_pred chhHHhhHHHHHHHhhcCCCcceEEecCCCCCCccccchhhHHh
Q 037238 138 PTMVANTLHAAAVLLREGGDWDWFINLSASDYPLVTQDDLLDAF 181 (410)
Q Consensus 138 ~S~V~AtL~~~~~lL~~~~~wd~finLSgsDyPLkt~~~i~~~f 181 (410)
.+ .|--.+++. . .-||++.+.+.|.+- .+.+...+
T Consensus 72 ~~--~a~n~g~~~----a-~gd~i~~~DaD~~~~--~~~l~~~~ 106 (241)
T cd06427 72 KP--KACNYALAF----A-RGEYVVIYDAEDAPD--PDQLKKAV 106 (241)
T ss_pred hH--HHHHHHHHh----c-CCCEEEEEcCCCCCC--hHHHHHHH
Confidence 33 222223332 2 348999999888844 44444433
No 40
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=55.75 E-value=2.3e+02 Score=28.70 Aligned_cols=96 Identities=19% Similarity=0.206 Sum_probs=56.9
Q ss_pred CCceEEEeeccCCChHHHHHHHHHhh---cCCCceEEEeecCCChHHhhHHHHHhhcccceeec-ccEEEEeecceeeec
Q 037238 61 PPRFAYLISGSVGDGNMIKRTLLALY---HPNNVYVVHLDRASSESERLDLQNFVNGFHLFNKF-SNVKMITKANLVTYR 136 (410)
Q Consensus 61 ~~kiAYLI~~hk~d~~~l~RLL~aLy---~p~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~-~NV~vv~~~~~V~wg 136 (410)
+|++..+|=+++.+.+-+++++.++. .|+-.+++=.| .++++..+-+++... ++ +++.++..
T Consensus 53 ~p~vsviiP~ynE~~~~~~~~l~s~~~~dyp~~evivv~d-~~~d~~~~~~~~~~~------~~~~~~~~~~~------- 118 (439)
T COG1215 53 LPKVSVIIPAYNEEPEVLEETLESLLSQDYPRYEVIVVDD-GSTDETYEILEELGA------EYGPNFRVIYP------- 118 (439)
T ss_pred CCceEEEEecCCCchhhHHHHHHHHHhCCCCCceEEEECC-CCChhHHHHHHHHHh------hcCcceEEEec-------
Confidence 58999999999866669999998876 35444444444 444555555555432 33 46666511
Q ss_pred CchhHHhhHHHHHHHhhcCCCcceEEecCCCCCCcc
Q 037238 137 GPTMVANTLHAAAVLLREGGDWDWFINLSASDYPLV 172 (410)
Q Consensus 137 g~S~V~AtL~~~~~lL~~~~~wd~finLSgsDyPLk 172 (410)
.....+-..++...++.. .-|+++.+-+...|=+
T Consensus 119 -~~~~~gK~~al~~~l~~~-~~d~V~~~DaD~~~~~ 152 (439)
T COG1215 119 -EKKNGGKAGALNNGLKRA-KGDVVVILDADTVPEP 152 (439)
T ss_pred -cccCccchHHHHHHHhhc-CCCEEEEEcCCCCCCh
Confidence 122223334444555543 3788887777776543
No 41
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=55.62 E-value=99 Score=29.97 Aligned_cols=100 Identities=15% Similarity=0.078 Sum_probs=60.8
Q ss_pred EEeeccCCCh-HHHHHHHHHhhc---CC-CceEEEeecCCChHHhhHHHHHhhcccceeecccEEEEeecceeeecCchh
Q 037238 66 YLISGSVGDG-NMIKRTLLALYH---PN-NVYVVHLDRASSESERLDLQNFVNGFHLFNKFSNVKMITKANLVTYRGPTM 140 (410)
Q Consensus 66 YLI~~hk~d~-~~l~RLL~aLy~---p~-n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~ 140 (410)
.+|.+++ .. +.+.++|..|.. +. ..=+|-||-.|++.....+.+... ....++|+++..... .|++
T Consensus 2 IIIp~~N-~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~~----~~~~~~v~vi~~~~n---~G~~- 72 (299)
T cd02510 2 VIIIFHN-EALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEYY----KKYLPKVKVLRLKKR---EGLI- 72 (299)
T ss_pred EEEEEec-CcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHHH----hhcCCcEEEEEcCCC---CCHH-
Confidence 3566776 56 899999998863 22 235899998887665544433111 124578998854321 2333
Q ss_pred HHhhHHHHHHHhhcCCCcceEEecCCCCCCccccchhhHHhh
Q 037238 141 VANTLHAAAVLLREGGDWDWFINLSASDYPLVTQDDLLDAFS 182 (410)
Q Consensus 141 V~AtL~~~~~lL~~~~~wd~finLSgsDyPLkt~~~i~~~fs 182 (410)
.|--.+++.+ .-||++.|.+.+.+ +.+-|...+.
T Consensus 73 -~a~N~g~~~A-----~gd~i~fLD~D~~~--~~~wL~~ll~ 106 (299)
T cd02510 73 -RARIAGARAA-----TGDVLVFLDSHCEV--NVGWLEPLLA 106 (299)
T ss_pred -HHHHHHHHHc-----cCCEEEEEeCCccc--CccHHHHHHH
Confidence 4444444443 24899999999987 5555555543
No 42
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=52.02 E-value=1.4e+02 Score=24.76 Aligned_cols=96 Identities=16% Similarity=0.152 Sum_probs=51.6
Q ss_pred EeeccCCChHHHHHHHHHhhcCC--CceEEEeecCCChHHhhHHHHHhhcccceeecccEEEEeecceeeecCchhHHhh
Q 037238 67 LISGSVGDGNMIKRTLLALYHPN--NVYVVHLDRASSESERLDLQNFVNGFHLFNKFSNVKMITKANLVTYRGPTMVANT 144 (410)
Q Consensus 67 LI~~hk~d~~~l~RLL~aLy~p~--n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~At 144 (410)
+|.+++ ..+.+.++|+.+.... +.=+|=+|-.+++...+.+..+... ...++.++... ...| ...|-
T Consensus 2 iip~~n-~~~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~~~~~~~-----~~~~~~~~~~~---~~~g--~~~~~ 70 (180)
T cd06423 2 IVPAYN-EEAVIERTIESLLALDYPKLEVIVVDDGSTDDTLEILEELAAL-----YIRRVLVVRDK---ENGG--KAGAL 70 (180)
T ss_pred eecccC-hHHHHHHHHHHHHhCCCCceEEEEEeCCCccchHHHHHHHhcc-----ccceEEEEEec---ccCC--chHHH
Confidence 456665 6789999999887532 3334446666655544444433211 11334443221 1122 33333
Q ss_pred HHHHHHHhhcCCCcceEEecCCCCCCccccchhhHH
Q 037238 145 LHAAAVLLREGGDWDWFINLSASDYPLVTQDDLLDA 180 (410)
Q Consensus 145 L~~~~~lL~~~~~wd~finLSgsDyPLkt~~~i~~~ 180 (410)
-.+++.+ .-+|++++-+.|++ +.+.|...
T Consensus 71 n~~~~~~-----~~~~i~~~D~D~~~--~~~~l~~~ 99 (180)
T cd06423 71 NAGLRHA-----KGDIVVVLDADTIL--EPDALKRL 99 (180)
T ss_pred HHHHHhc-----CCCEEEEECCCCCc--ChHHHHHH
Confidence 3344433 46899999888877 45555544
No 43
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=51.89 E-value=1.3e+02 Score=27.95 Aligned_cols=96 Identities=16% Similarity=0.221 Sum_probs=56.5
Q ss_pred ceEEEeeccCCChHHHHHHHHHhhcCCCceEEEeecCCChHHhhHHHHHhhcccceeecccEEEEeecceeeecCchhHH
Q 037238 63 RFAYLISGSVGDGNMIKRTLLALYHPNNVYVVHLDRASSESERLDLQNFVNGFHLFNKFSNVKMITKANLVTYRGPTMVA 142 (410)
Q Consensus 63 kiAYLI~~hk~d~~~l~RLL~aLy~p~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~ 142 (410)
++..+|.+++ +.+.+.++|..|.. +..=+|=+|..|++... ++++ ..++.++.. .|+|++...
T Consensus 1 ~isvii~~~N-e~~~l~~~l~sl~~-~~~eiivvD~gStD~t~-~i~~----------~~~~~v~~~----~~~g~~~~~ 63 (229)
T cd02511 1 TLSVVIITKN-EERNIERCLESVKW-AVDEIIVVDSGSTDRTV-EIAK----------EYGAKVYQR----WWDGFGAQR 63 (229)
T ss_pred CEEEEEEeCC-cHHHHHHHHHHHhc-ccCEEEEEeCCCCccHH-HHHH----------HcCCEEEEC----CCCChHHHH
Confidence 3677888886 77899999999974 32235668887766543 3322 235666643 566664222
Q ss_pred hhHHHHHHHhhcCCCcceEEecCCCCCCccc-cchhhHHhh
Q 037238 143 NTLHAAAVLLREGGDWDWFINLSASDYPLVT-QDDLLDAFS 182 (410)
Q Consensus 143 AtL~~~~~lL~~~~~wd~finLSgsDyPLkt-~~~i~~~fs 182 (410)
-.+++.+ .-||++.|-+.+.+-.. .+++.+.+.
T Consensus 64 --n~~~~~a-----~~d~vl~lDaD~~~~~~~~~~l~~~~~ 97 (229)
T cd02511 64 --NFALELA-----TNDWVLSLDADERLTPELADEILALLA 97 (229)
T ss_pred --HHHHHhC-----CCCEEEEEeCCcCcCHHHHHHHHHHHh
Confidence 1233322 24699999998886432 233444443
No 44
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=50.96 E-value=1.3e+02 Score=26.90 Aligned_cols=99 Identities=18% Similarity=0.244 Sum_probs=52.5
Q ss_pred EeeccCCChHHHHHHHHHhh---cCC--CceEEEeecCCChHHhhHHHHHhhcccceeecccEEEEeecceeeecCchhH
Q 037238 67 LISGSVGDGNMIKRTLLALY---HPN--NVYVVHLDRASSESERLDLQNFVNGFHLFNKFSNVKMITKANLVTYRGPTMV 141 (410)
Q Consensus 67 LI~~hk~d~~~l~RLL~aLy---~p~--n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V 141 (410)
+|.+++ +.+.+.++|++|. +|. ..+ |=||-.+++...+.++ +... ...++|.++.... ....|. .
T Consensus 2 iip~~n-~~~~l~~~l~sl~~q~~~~~~~ei-ivvdd~s~d~t~~~~~-~~~~----~~~~~v~~~~~~~-~~~~g~--~ 71 (229)
T cd04192 2 VIAARN-EAENLPRLLQSLSALDYPKEKFEV-ILVDDHSTDGTVQILE-FAAA----KPNFQLKILNNSR-VSISGK--K 71 (229)
T ss_pred EEEecC-cHHHHHHHHHHHHhCCCCCCceEE-EEEcCCCCcChHHHHH-HHHh----CCCcceEEeeccC-cccchh--H
Confidence 455665 7889999999884 343 233 4455555444333333 2211 1245777765332 112222 2
Q ss_pred HhhHHHHHHHhhcCCCcceEEecCCCCCCccccchhhHHhh
Q 037238 142 ANTLHAAAVLLREGGDWDWFINLSASDYPLVTQDDLLDAFS 182 (410)
Q Consensus 142 ~AtL~~~~~lL~~~~~wd~finLSgsDyPLkt~~~i~~~fs 182 (410)
.|-..+++. ..-||++++.+.+.+ ..+.|...+.
T Consensus 72 ~a~n~g~~~-----~~~d~i~~~D~D~~~--~~~~l~~l~~ 105 (229)
T cd04192 72 NALTTAIKA-----AKGDWIVTTDADCVV--PSNWLLTFVA 105 (229)
T ss_pred HHHHHHHHH-----hcCCEEEEECCCccc--CHHHHHHHHH
Confidence 222223322 235899999999976 4555555543
No 45
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=50.70 E-value=1.2e+02 Score=29.85 Aligned_cols=100 Identities=13% Similarity=0.157 Sum_probs=52.5
Q ss_pred CCCceEEEeeccCCCh--HHHHHHHHH-h--------hcCCCceEEEeec------C-CChHHhhHHHHHhhcccceeec
Q 037238 60 PPPRFAYLISGSVGDG--NMIKRTLLA-L--------YHPNNVYVVHLDR------A-SSESERLDLQNFVNGFHLFNKF 121 (410)
Q Consensus 60 ~~~kiAYLI~~hk~d~--~~l~RLL~a-L--------y~p~n~y~IHlD~------k-a~~~~~~~l~~~v~~~~~~~~~ 121 (410)
....+|||+.|..++. ..++.++.+ + .||+-+ +|--+. + -+.++-.+|..++...|..+ .
T Consensus 12 ~kLshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~-~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g-~ 89 (263)
T PRK06581 12 NKLYNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYH-FIARETSATSNAKNISIEQIRKLQDFLSKTSAIS-G 89 (263)
T ss_pred CcchheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEE-EEeccccccccCCcccHHHHHHHHHHHhhCcccC-C
Confidence 3578999999865321 122222222 2 467633 333222 1 13445555666554333211 2
Q ss_pred ccEEEEeecceeeecCchhHHhhHHHHHHHhhcCCCcceEEecCCCC
Q 037238 122 SNVKMITKANLVTYRGPTMVANTLHAAAVLLREGGDWDWFINLSASD 168 (410)
Q Consensus 122 ~NV~vv~~~~~V~wgg~S~V~AtL~~~~~lL~~~~~wd~finLSgsD 168 (410)
-.|.++. ..-.|-.+.-+++=-.|.+.++..+|++++.+-
T Consensus 90 ~KViII~-------~ae~mt~~AANALLKtLEEPP~~t~fILit~~~ 129 (263)
T PRK06581 90 YKVAIIY-------SAELMNLNAANSCLKILEDAPKNSYIFLITSRA 129 (263)
T ss_pred cEEEEEe-------chHHhCHHHHHHHHHhhcCCCCCeEEEEEeCCh
Confidence 2344443 344555555555555567788899999988763
No 46
>TIGR02803 ExbD_1 TonB system transport protein ExbD, group 1. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=48.89 E-value=1.7e+02 Score=24.86 Aligned_cols=49 Identities=10% Similarity=0.221 Sum_probs=32.8
Q ss_pred hHHHHHHHHHhh--cCCCceEEEeecCCChHHhhHHHHHhhcccceeecccEEEE
Q 037238 75 GNMIKRTLLALY--HPNNVYVVHLDRASSESERLDLQNFVNGFHLFNKFSNVKMI 127 (410)
Q Consensus 75 ~~~l~RLL~aLy--~p~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv 127 (410)
.+++...|+++. +|+..++|..|++++.+.-..+-..++.. .+.+|.++
T Consensus 69 ~~~L~~~l~~~~~~~~~~~v~I~aD~~~~~~~vv~v~d~~~~a----G~~~v~l~ 119 (122)
T TIGR02803 69 RETLGTALDALTEGDKDTTIFFRADKTVDYGDLMKVMNLLRQA----GYLKIGLV 119 (122)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHHHHHc----CCCEEEEE
Confidence 466766776654 68888899999999877665555555432 34466654
No 47
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=48.87 E-value=1.7e+02 Score=26.50 Aligned_cols=95 Identities=9% Similarity=0.067 Sum_probs=53.7
Q ss_pred EeeccCCChHHHHHHHHHhhc---CCCceEEEeecCCChHHhhHHHHHhhcccceeecccEEEEeecceeeecCchhHHh
Q 037238 67 LISGSVGDGNMIKRTLLALYH---PNNVYVVHLDRASSESERLDLQNFVNGFHLFNKFSNVKMITKANLVTYRGPTMVAN 143 (410)
Q Consensus 67 LI~~hk~d~~~l~RLL~aLy~---p~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~A 143 (410)
+|.+++ ..+.|.++|..|.. |++.=+|-+|..+++...+.++++.+.. ...+++++.....-.. +.+.-.|
T Consensus 2 iIp~yn-~~~~l~~~l~sl~~q~~~~~~eiiVvDd~S~d~t~~i~~~~~~~~----~~~~~~~~~~~~~~~~-~~G~~~a 75 (219)
T cd06913 2 ILPVHN-GEQWLDECLESVLQQDFEGTLELSVFNDASTDKSAEIIEKWRKKL----EDSGVIVLVGSHNSPS-PKGVGYA 75 (219)
T ss_pred EEeecC-cHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCccHHHHHHHHHHhC----cccCeEEEEecccCCC-CccHHHH
Confidence 566776 67899999999864 3344578888877665544455443221 1235665532211111 1223333
Q ss_pred hHHHHHHHhhcCCCcceEEecCCCCCCcc
Q 037238 144 TLHAAAVLLREGGDWDWFINLSASDYPLV 172 (410)
Q Consensus 144 tL~~~~~lL~~~~~wd~finLSgsDyPLk 172 (410)
.-.+++.+ .-||++.|.+.|++.-
T Consensus 76 ~N~g~~~a-----~gd~i~~lD~D~~~~~ 99 (219)
T cd06913 76 KNQAIAQS-----SGRYLCFLDSDDVMMP 99 (219)
T ss_pred HHHHHHhc-----CCCEEEEECCCccCCh
Confidence 33344332 3489999999998543
No 48
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=48.06 E-value=1.4e+02 Score=26.36 Aligned_cols=99 Identities=13% Similarity=0.132 Sum_probs=55.8
Q ss_pred EEeeccCCChHHHHHHHHHhhcCC--CceEEEeecCCChHHhhHHHHHhhcccceeecccEEEEeecceeeecCchhHHh
Q 037238 66 YLISGSVGDGNMIKRTLLALYHPN--NVYVVHLDRASSESERLDLQNFVNGFHLFNKFSNVKMITKANLVTYRGPTMVAN 143 (410)
Q Consensus 66 YLI~~hk~d~~~l~RLL~aLy~p~--n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~A 143 (410)
.+|-+++ ..+.|.++|..+.... +.=+|=+|..+++...+.++.+.+..| .++.++... .+.+...+
T Consensus 2 IvIp~yn-~~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~~~~~~~~-----~~~~~~~~~-----~~~G~~~~ 70 (214)
T cd04196 2 VLMATYN-GEKYLREQLDSILAQTYKNDELIISDDGSTDGTVEIIKEYIDKDP-----FIIILIRNG-----KNLGVARN 70 (214)
T ss_pred EEEEecC-cHHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHHHHHhcCC-----ceEEEEeCC-----CCccHHHH
Confidence 3566775 6788999998886432 233566777776665555555433211 234444322 23344444
Q ss_pred hHHHHHHHhhcCCCcceEEecCCCCCCccccchhhHHhh
Q 037238 144 TLHAAAVLLREGGDWDWFINLSASDYPLVTQDDLLDAFS 182 (410)
Q Consensus 144 tL~~~~~lL~~~~~wd~finLSgsDyPLkt~~~i~~~fs 182 (410)
.-.+++. .+.+|+++|.+.|++. .+.|.+.+.
T Consensus 71 ~n~g~~~-----~~g~~v~~ld~Dd~~~--~~~l~~~~~ 102 (214)
T cd04196 71 FESLLQA-----ADGDYVFFCDQDDIWL--PDKLERLLK 102 (214)
T ss_pred HHHHHHh-----CCCCEEEEECCCcccC--hhHHHHHHH
Confidence 3333222 3579999999998874 455555444
No 49
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=47.78 E-value=1e+02 Score=34.72 Aligned_cols=102 Identities=15% Similarity=0.084 Sum_probs=56.9
Q ss_pred CCCCCceEEEeeccCCChHHHHHHHH----HhhcCCCceEEEeecCCChHHhhHHHHHhhcccceeecccEEEEeeccee
Q 037238 58 LPPPPRFAYLISGSVGDGNMIKRTLL----ALYHPNNVYVVHLDRASSESERLDLQNFVNGFHLFNKFSNVKMITKANLV 133 (410)
Q Consensus 58 ~~~~~kiAYLI~~hk~d~~~l~RLL~----aLy~p~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V 133 (410)
.+.+++++.+|=+|+ +...+.+++. +++.|+-.+++=.|.+ ++.-.+.+++. ...+|+|+++-....
T Consensus 59 ~~~~~~vsIlVPa~n-E~~vi~~~i~~ll~~ldYP~~eI~vi~~~n-D~~T~~~~~~l------~~~~p~~~~v~~~~~- 129 (727)
T PRK11234 59 KPDEKPLAIMVPAWN-ETGVIGNMAELAATTLDYENYHIFVGTYPN-DPATQADVDAV------CARFPNVHKVVCARP- 129 (727)
T ss_pred cCCCCCEEEEEecCc-chhhHHHHHHHHHHhCCCCCeEEEEEecCC-ChhHHHHHHHH------HHHCCCcEEEEeCCC-
Confidence 345689999999997 7776766666 4567875555555432 22222333332 235688876542221
Q ss_pred eecCchhHHhhHHHHHHHhhc----CCCcceEEecCCCCCC
Q 037238 134 TYRGPTMVANTLHAAAVLLRE----GGDWDWFINLSASDYP 170 (410)
Q Consensus 134 ~wgg~S~V~AtL~~~~~lL~~----~~~wd~finLSgsDyP 170 (410)
|.-+-..|--.+++.+.+. +.+++.++.+-+.|.|
T Consensus 130 --g~~gKa~aLN~~l~~~~~~e~~~~~~~~vvvi~DAD~~v 168 (727)
T PRK11234 130 --GPTSKADCLNNVLDAITQFERSANFAFAGFILHDAEDVI 168 (727)
T ss_pred --CCCCHHHHHHHHHHHHHhhhcccCCcccEEEEEcCCCCC
Confidence 2223444444444444322 2367778777777764
No 50
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=46.03 E-value=1.3e+02 Score=30.62 Aligned_cols=80 Identities=14% Similarity=0.136 Sum_probs=46.5
Q ss_pred HHHHHHhhcCCCceEEEeecC-C--ChHHhhHHHHHhhcccceeecccEEEEeecceeeecCchhHHhhHHHHHHHhhcC
Q 037238 79 KRTLLALYHPNNVYVVHLDRA-S--SESERLDLQNFVNGFHLFNKFSNVKMITKANLVTYRGPTMVANTLHAAAVLLREG 155 (410)
Q Consensus 79 ~RLL~aLy~p~n~y~IHlD~k-a--~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~AtL~~~~~lL~~~ 155 (410)
.|++.+..|||-++ |--+.+ . +.++-.++.+.+...|... .-.|.+|.+.+ .|-.+.-+++--.|.+.
T Consensus 65 C~~~~~g~HPD~~~-i~p~~~~~~I~idqiR~l~~~~~~~~~~g-~~kV~iI~~ae-------~m~~~AaNaLLKtLEEP 135 (334)
T PRK07993 65 CQLMQAGTHPDYYT-LTPEKGKSSLGVDAVREVTEKLYEHARLG-GAKVVWLPDAA-------LLTDAAANALLKTLEEP 135 (334)
T ss_pred HHHHHcCCCCCEEE-EecccccccCCHHHHHHHHHHHhhccccC-CceEEEEcchH-------hhCHHHHHHHHHHhcCC
Confidence 35666677898544 333321 2 3445455555554333211 22455555444 56666666666666788
Q ss_pred CCcceEEecCCC
Q 037238 156 GDWDWFINLSAS 167 (410)
Q Consensus 156 ~~wd~finLSgs 167 (410)
++..+||+++.+
T Consensus 136 p~~t~fiL~t~~ 147 (334)
T PRK07993 136 PENTWFFLACRE 147 (334)
T ss_pred CCCeEEEEEECC
Confidence 899999999976
No 51
>PF07747 MTH865: MTH865-like family; InterPro: IPR024093 This entry represents a group of uncharacterised hypothetical proteins from archaea, including the 8.4 kDa protein MTH865 from Methanobacterium thermoautotrophicum. The NMR structure of MTH865 reveals an EF-Hand-like fold consisting of four helices in two hairpins [].; PDB: 1IIO_A.
Probab=44.11 E-value=10 Score=30.30 Aligned_cols=18 Identities=28% Similarity=0.647 Sum_probs=15.2
Q ss_pred cCCCCCCccccchhhHHh
Q 037238 164 LSASDYPLVTQDDLLDAF 181 (410)
Q Consensus 164 LSgsDyPLkt~~~i~~~f 181 (410)
+.|.||||+|+.||...|
T Consensus 11 ~~~a~FPI~s~~eL~~al 28 (75)
T PF07747_consen 11 FKGADFPIKSPMELLPAL 28 (75)
T ss_dssp HTTSSSTTBHHHHHHHH-
T ss_pred HhcCCCCCCCHHHHHHhC
Confidence 567899999999998876
No 52
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=42.67 E-value=1.6e+02 Score=29.51 Aligned_cols=97 Identities=23% Similarity=0.227 Sum_probs=50.3
Q ss_pred CCceEEEeeccCCCh--HHHHHHHHHhh-----------------------cCCCceEEEeecCC-ChHHhhHHHHHhhc
Q 037238 61 PPRFAYLISGSVGDG--NMIKRTLLALY-----------------------HPNNVYVVHLDRAS-SESERLDLQNFVNG 114 (410)
Q Consensus 61 ~~kiAYLI~~hk~d~--~~l~RLL~aLy-----------------------~p~n~y~IHlD~ka-~~~~~~~l~~~v~~ 114 (410)
.+.+|||+.|..|-+ .....+.+++. ||+-. ++-.|.+. +.++-.++...+..
T Consensus 26 ~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~-~i~~~~~~i~id~ir~l~~~~~~ 104 (329)
T PRK08058 26 RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVH-LVAPDGQSIKKDQIRYLKEEFSK 104 (329)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEE-EeccccccCCHHHHHHHHHHHhh
Confidence 467888888876543 22233334443 66533 34444332 23333333333332
Q ss_pred ccceeecccEEEEeecceeeecCchhHHhhHHHHHHHhhcCCCcceEEecCC
Q 037238 115 FHLFNKFSNVKMITKANLVTYRGPTMVANTLHAAAVLLREGGDWDWFINLSA 166 (410)
Q Consensus 115 ~~~~~~~~NV~vv~~~~~V~wgg~S~V~AtL~~~~~lL~~~~~wd~finLSg 166 (410)
.|... ...|.++.+.+ .|-....+++-..+++.++.-+||+++.
T Consensus 105 ~~~~~-~~kvviI~~a~-------~~~~~a~NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 105 SGVES-NKKVYIIEHAD-------KMTASAANSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred CCccc-CceEEEeehHh-------hhCHHHHHHHHHHhcCCCCCceEEEEeC
Confidence 23222 33677776543 3334444555555666778888998776
No 53
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=42.56 E-value=2.4e+02 Score=24.95 Aligned_cols=90 Identities=14% Similarity=0.187 Sum_probs=50.9
Q ss_pred EeeccCCChHHHHHHHHHhhcCC--CceEEEeecCCChHHhhHHHHHhhcccceeecccEEEEeecceeeecCchhHHhh
Q 037238 67 LISGSVGDGNMIKRTLLALYHPN--NVYVVHLDRASSESERLDLQNFVNGFHLFNKFSNVKMITKANLVTYRGPTMVANT 144 (410)
Q Consensus 67 LI~~hk~d~~~l~RLL~aLy~p~--n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~At 144 (410)
+|.+++ ..+.+.++|+.|.... +.=+|=+|..+++.-.+.+++.. ...++.++.... .-|....+
T Consensus 2 iI~~~n-~~~~l~~~l~sl~~q~~~~~eiiivD~~s~d~t~~~~~~~~-------~~~~i~~~~~~~--n~g~~~~~--- 68 (202)
T cd04185 2 VVVTYN-RLDLLKECLDALLAQTRPPDHIIVIDNASTDGTAEWLTSLG-------DLDNIVYLRLPE--NLGGAGGF--- 68 (202)
T ss_pred EEEeeC-CHHHHHHHHHHHHhccCCCceEEEEECCCCcchHHHHHHhc-------CCCceEEEECcc--ccchhhHH---
Confidence 466775 6788999999996421 22356678777665555444422 112355554322 22222222
Q ss_pred HHHHHHHhhcCCCcceEEecCCCCCCc
Q 037238 145 LHAAAVLLREGGDWDWFINLSASDYPL 171 (410)
Q Consensus 145 L~~~~~lL~~~~~wd~finLSgsDyPL 171 (410)
-.++..+. ..+.||++.+.+.+.+-
T Consensus 69 n~~~~~a~--~~~~d~v~~ld~D~~~~ 93 (202)
T cd04185 69 YEGVRRAY--ELGYDWIWLMDDDAIPD 93 (202)
T ss_pred HHHHHHHh--ccCCCEEEEeCCCCCcC
Confidence 22334443 23579999998888874
No 54
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=41.34 E-value=1.4e+02 Score=28.26 Aligned_cols=113 Identities=19% Similarity=0.119 Sum_probs=60.1
Q ss_pred eEEEeeccCCChHHHHHHHHHh---hcCCCceEEEeecCCChHHhhHHHHHhhcccceeecccEEEEeecceeeecCchh
Q 037238 64 FAYLISGSVGDGNMIKRTLLAL---YHPNNVYVVHLDRASSESERLDLQNFVNGFHLFNKFSNVKMITKANLVTYRGPTM 140 (410)
Q Consensus 64 iAYLI~~hk~d~~~l~RLL~aL---y~p~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~ 140 (410)
.-++++|+.|-...+.||++++ |.|+.++ +--+.+.+ .+..+.+....+ .....|..+...|+ |.=.=.|-
T Consensus 40 ~~lVvlGSGGHT~EMlrLl~~l~~~y~~r~yI-~a~tD~mS---~~k~~~F~~~~a-~~~a~~~~ipRsRe-VgQS~ltS 113 (211)
T KOG3339|consen 40 STLVVLGSGGHTGEMLRLLEALQDLYSPRSYI-AADTDEMS---EQKARSFELSLA-HCKAKNYEIPRSRE-VGQSWLTS 113 (211)
T ss_pred eEEEEEcCCCcHHHHHHHHHHHHhhcCceEEE-EecCchhh---HHHHHhhhcccc-ccchhheecchhhh-hhhhhhhh
Confidence 5678888888889999999987 5666554 22222222 222333322111 11233555443333 43333455
Q ss_pred HHhhHHHHHHHhhcC--CCcceEEecC-CCCCCccccchhhHHhh
Q 037238 141 VANTLHAAAVLLREG--GDWDWFINLS-ASDYPLVTQDDLLDAFS 182 (410)
Q Consensus 141 V~AtL~~~~~lL~~~--~~wd~finLS-gsDyPLkt~~~i~~~fs 182 (410)
|-.|+.++...+..- ..-|-+...- |.|.|+-=-..+.+++-
T Consensus 114 v~Tti~all~s~~lv~RirPdlil~NGPGTCv~i~~~a~l~~iL~ 158 (211)
T KOG3339|consen 114 VFTTIWALLQSFVLVWRIRPDLILCNGPGTCVPICLSAYLMEILG 158 (211)
T ss_pred HHHHHHHHHHHheEEEecCCCEEEECCCCcEeHHHHHHHHHHHhC
Confidence 666666555544211 1234444444 68888876666666653
No 55
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=40.93 E-value=24 Score=30.68 Aligned_cols=18 Identities=17% Similarity=0.587 Sum_probs=9.4
Q ss_pred ceehhHHHHHHHHHHHHH
Q 037238 20 KWIFPLAVGSVVSIFLIF 37 (410)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~ 37 (410)
||++.+++..+++++|++
T Consensus 1 RW~l~~iii~~i~l~~~~ 18 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFLFL 18 (130)
T ss_pred CeeeHHHHHHHHHHHHHH
Confidence 687655544444444433
No 56
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=39.33 E-value=1.6e+02 Score=26.45 Aligned_cols=97 Identities=11% Similarity=0.152 Sum_probs=54.3
Q ss_pred EeeccCCChHHHHHHHHHhhcC---CCceEEEeecCCChHHhhHHHHHhhcccceeecccEEEEeecceeeecCchhHHh
Q 037238 67 LISGSVGDGNMIKRTLLALYHP---NNVYVVHLDRASSESERLDLQNFVNGFHLFNKFSNVKMITKANLVTYRGPTMVAN 143 (410)
Q Consensus 67 LI~~hk~d~~~l~RLL~aLy~p---~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~A 143 (410)
+|.+++ ..+.+.++|+.+... .+.=+|=||-.+++.-.+.++.+.+ ..++|.++... .-+|.+ .|
T Consensus 2 iIp~yn-~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~~~~~~------~~~~i~~~~~~---~n~G~~--~a 69 (224)
T cd06442 2 IIPTYN-ERENIPELIERLDAALKGIDYEIIVVDDNSPDGTAEIVRELAK------EYPRVRLIVRP---GKRGLG--SA 69 (224)
T ss_pred eEeccc-hhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHHHHHHH------hCCceEEEecC---CCCChH--HH
Confidence 566776 678899998888742 2333566777666554444444332 34566666432 223433 23
Q ss_pred hHHHHHHHhhcCCCcceEEecCCCCCCccccchhhHHhh
Q 037238 144 TLHAAAVLLREGGDWDWFINLSASDYPLVTQDDLLDAFS 182 (410)
Q Consensus 144 tL~~~~~lL~~~~~wd~finLSgsDyPLkt~~~i~~~fs 182 (410)
--.+++.+. =||++.|.+.|.+ +.+.|...+.
T Consensus 70 ~n~g~~~a~-----gd~i~~lD~D~~~--~~~~l~~l~~ 101 (224)
T cd06442 70 YIEGFKAAR-----GDVIVVMDADLSH--PPEYIPELLE 101 (224)
T ss_pred HHHHHHHcC-----CCEEEEEECCCCC--CHHHHHHHHH
Confidence 334444432 2899999888765 4444544443
No 57
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=39.09 E-value=4.3e+02 Score=30.53 Aligned_cols=95 Identities=17% Similarity=0.190 Sum_probs=53.4
Q ss_pred CCCCceEEEeeccCCChHHHHHHHHHh---hcCCC-ceEEEeecCCChHHhhHHHHHhhcccceeecccEEEEeecceee
Q 037238 59 PPPPRFAYLISGSVGDGNMIKRTLLAL---YHPNN-VYVVHLDRASSESERLDLQNFVNGFHLFNKFSNVKMITKANLVT 134 (410)
Q Consensus 59 ~~~~kiAYLI~~hk~d~~~l~RLL~aL---y~p~n-~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~ 134 (410)
+..|+++.+|-+|+.+.+.+.+.+.++ +.|.. .=++=+|..+.++. .++++ + .+|+++.....
T Consensus 257 ~~~P~VsViIPtYNE~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~t-~~la~---------~-~~v~yI~R~~n-- 323 (852)
T PRK11498 257 SLWPTVDIFVPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILDDGGREEF-RQFAQ---------E-VGVKYIARPTH-- 323 (852)
T ss_pred CCCCcEEEEEecCCCcHHHHHHHHHHHHhccCCCCceEEEEEeCCCChHH-HHHHH---------H-CCcEEEEeCCC--
Confidence 345799999999985545666776653 44543 23555676655543 33322 1 26777754321
Q ss_pred ecCchhHHhhHHHHHHHhhcCCCcceEEecCCCCCCccc
Q 037238 135 YRGPTMVANTLHAAAVLLREGGDWDWFINLSASDYPLVT 173 (410)
Q Consensus 135 wgg~S~V~AtL~~~~~lL~~~~~wd~finLSgsDyPLkt 173 (410)
-+| . +. ++..+++. .+-||++.+-+.+.|-.+
T Consensus 324 ~~g--K-AG---nLN~aL~~-a~GEyIavlDAD~ip~pd 355 (852)
T PRK11498 324 EHA--K-AG---NINNALKY-AKGEFVAIFDCDHVPTRS 355 (852)
T ss_pred Ccc--h-HH---HHHHHHHh-CCCCEEEEECCCCCCChH
Confidence 111 1 11 12223332 245999999999998543
No 58
>TIGR02804 ExbD_2 TonB system transport protein ExbD, group 2. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=37.11 E-value=2.6e+02 Score=23.70 Aligned_cols=48 Identities=8% Similarity=0.227 Sum_probs=31.3
Q ss_pred hHHHHHHHHHhhcCCCceEEEeecCCChHHhhHHHHHhhcccceeecccEEEE
Q 037238 75 GNMIKRTLLALYHPNNVYVVHLDRASSESERLDLQNFVNGFHLFNKFSNVKMI 127 (410)
Q Consensus 75 ~~~l~RLL~aLy~p~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv 127 (410)
.+.+...+++. .|+..++|..|++++.+...++-..++.. ...||.++
T Consensus 71 ~~~L~~~l~~~-~~~~~v~i~aD~~~~~~~vv~v~d~~~~~----G~~~v~l~ 118 (121)
T TIGR02804 71 LEELEAEIAQL-NKDQKVTLKSDKEAKFQDFVTITDMLKAK----EHENVQIV 118 (121)
T ss_pred HHHHHHHHHhh-CCCCeEEEEeCCCCCHhHHHHHHHHHHHc----CCCeEEEE
Confidence 35666667766 46777889999998877666555555432 24456554
No 59
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=36.97 E-value=2.5e+02 Score=27.69 Aligned_cols=98 Identities=17% Similarity=0.104 Sum_probs=53.4
Q ss_pred CCceEEEeeccCCCh--HHHHHHHHHh-------hcCCCceEEEeecCC-ChHHhhHHHHHhhcccceeecccEEEEeec
Q 037238 61 PPRFAYLISGSVGDG--NMIKRTLLAL-------YHPNNVYVVHLDRAS-SESERLDLQNFVNGFHLFNKFSNVKMITKA 130 (410)
Q Consensus 61 ~~kiAYLI~~hk~d~--~~l~RLL~aL-------y~p~n~y~IHlD~ka-~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~ 130 (410)
...+|||+.|..|-+ .....+.++| .||+-..+...|.+. +.++-.++...+...|... -..|.++.+.
T Consensus 24 ~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~~~~~~~~~p~~~-~~kv~iI~~a 102 (313)
T PRK05564 24 RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRNIIEEVNKKPYEG-DKKVIIIYNS 102 (313)
T ss_pred CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHHHHHHHhcCcccC-CceEEEEech
Confidence 467899999976542 2334444444 255543444435442 2333334444444445332 3467777654
Q ss_pred ceeeecCchhHHhhHHHHHHHhhcCCCcceEEecCC
Q 037238 131 NLVTYRGPTMVANTLHAAAVLLREGGDWDWFINLSA 166 (410)
Q Consensus 131 ~~V~wgg~S~V~AtL~~~~~lL~~~~~wd~finLSg 166 (410)
+ .|-.+.-+++-..|++.++..+||+++.
T Consensus 103 d-------~m~~~a~naLLK~LEepp~~t~~il~~~ 131 (313)
T PRK05564 103 E-------KMTEQAQNAFLKTIEEPPKGVFIILLCE 131 (313)
T ss_pred h-------hcCHHHHHHHHHHhcCCCCCeEEEEEeC
Confidence 3 3333344455555666778889998883
No 60
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=36.07 E-value=2.8e+02 Score=23.85 Aligned_cols=99 Identities=16% Similarity=0.180 Sum_probs=52.4
Q ss_pred EeeccCCChHHHHHHHHHhhcC--CCceEEEeecCCChHHhhHHHHHhhcccceeecccEEEEeecceeeecCchhHHhh
Q 037238 67 LISGSVGDGNMIKRTLLALYHP--NNVYVVHLDRASSESERLDLQNFVNGFHLFNKFSNVKMITKANLVTYRGPTMVANT 144 (410)
Q Consensus 67 LI~~hk~d~~~l~RLL~aLy~p--~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~At 144 (410)
+|.+++ ..+.+.++|.++... .+.=+|=+|-.+++...+.+..+.+.. ....+++... . .|+....+-
T Consensus 2 vip~~n-~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~t~~~~~~~~~~~----~~~~~~~~~~-~----~~~~~~~~~ 71 (182)
T cd06420 2 IITTYN-RPEALELVLKSVLNQSILPFEVIIADDGSTEETKELIEEFKSQF----PIPIKHVWQE-D----EGFRKAKIR 71 (182)
T ss_pred EEeecC-ChHHHHHHHHHHHhccCCCCEEEEEeCCCchhHHHHHHHHHhhc----CCceEEEEcC-C----cchhHHHHH
Confidence 566775 678999999998631 233345567666655444444432210 1223333321 1 122322232
Q ss_pred HHHHHHHhhcCCCcceEEecCCCCCCccccchhhHHhh
Q 037238 145 LHAAAVLLREGGDWDWFINLSASDYPLVTQDDLLDAFS 182 (410)
Q Consensus 145 L~~~~~lL~~~~~wd~finLSgsDyPLkt~~~i~~~fs 182 (410)
-.+++.+ .-+|++.|.+.+.| +.+-|...+.
T Consensus 72 n~g~~~a-----~g~~i~~lD~D~~~--~~~~l~~~~~ 102 (182)
T cd06420 72 NKAIAAA-----KGDYLIFIDGDCIP--HPDFIADHIE 102 (182)
T ss_pred HHHHHHh-----cCCEEEEEcCCccc--CHHHHHHHHH
Confidence 2333332 34899999999987 4444544443
No 61
>PRK08309 short chain dehydrogenase; Provisional
Probab=35.68 E-value=2.5e+02 Score=25.59 Aligned_cols=83 Identities=11% Similarity=0.127 Sum_probs=49.9
Q ss_pred ChHHHHHHHHHhhcCCCceEEEeecCCChHHhhHHHHHhhcccceeecccEEEEeecceeeecCchhHHhhHHHHHHHhh
Q 037238 74 DGNMIKRTLLALYHPNNVYVVHLDRASSESERLDLQNFVNGFHLFNKFSNVKMITKANLVTYRGPTMVANTLHAAAVLLR 153 (410)
Q Consensus 74 d~~~l~RLL~aLy~p~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~AtL~~~~~lL~ 153 (410)
+.+....+...+..+.+..++..|.....+....++..++ .++.+.++ |.|-....-++...+++.+=-
T Consensus 32 ~~~~~~~l~~~l~~~~~i~~~~~Dv~d~~sv~~~i~~~l~------~~g~id~l-----v~~vh~~~~~~~~~~~~~~gv 100 (177)
T PRK08309 32 REVKLENVKRESTTPESITPLPLDYHDDDALKLAIKSTIE------KNGPFDLA-----VAWIHSSAKDALSVVCRELDG 100 (177)
T ss_pred CHHHHHHHHHHhhcCCcEEEEEccCCCHHHHHHHHHHHHH------HcCCCeEE-----EEeccccchhhHHHHHHHHcc
Confidence 5666666666564456677778888765555444444322 33444333 566666666666666666544
Q ss_pred cCCCcceEEecCCC
Q 037238 154 EGGDWDWFINLSAS 167 (410)
Q Consensus 154 ~~~~wd~finLSgs 167 (410)
.+.+|.++|.|...
T Consensus 101 ~~~~~~~~h~~gs~ 114 (177)
T PRK08309 101 SSETYRLFHVLGSA 114 (177)
T ss_pred CCCCceEEEEeCCc
Confidence 45788999988443
No 62
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=35.47 E-value=2.3e+02 Score=22.63 Aligned_cols=88 Identities=17% Similarity=0.211 Sum_probs=48.0
Q ss_pred EeeccCCChHHHHHHHHHhhcCC--CceEEEeecCCChHHhhHHHHHhhcccceeecccEEEEeecceeeecCchhHHhh
Q 037238 67 LISGSVGDGNMIKRTLLALYHPN--NVYVVHLDRASSESERLDLQNFVNGFHLFNKFSNVKMITKANLVTYRGPTMVANT 144 (410)
Q Consensus 67 LI~~hk~d~~~l~RLL~aLy~p~--n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~At 144 (410)
+|.+++ +.+.+.++++++.... +.-++-+|..++++....+....+. ..++..+ ...+..+...+-
T Consensus 2 ii~~~~-~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~------~~~~~~~-----~~~~~~g~~~~~ 69 (156)
T cd00761 2 IIPAYN-EEPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAKK------DPRVIRV-----INEENQGLAAAR 69 (156)
T ss_pred EEeecC-cHHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHhc------CCCeEEE-----EecCCCChHHHH
Confidence 455664 6789999999886443 4445667776665554444432211 1122222 122233334444
Q ss_pred HHHHHHHhhcCCCcceEEecCCCCCCc
Q 037238 145 LHAAAVLLREGGDWDWFINLSASDYPL 171 (410)
Q Consensus 145 L~~~~~lL~~~~~wd~finLSgsDyPL 171 (410)
..++..+ +-||++.+.+.+.+-
T Consensus 70 ~~~~~~~-----~~d~v~~~d~D~~~~ 91 (156)
T cd00761 70 NAGLKAA-----RGEYILFLDADDLLL 91 (156)
T ss_pred HHHHHHh-----cCCEEEEECCCCccC
Confidence 4444443 468999987777653
No 63
>COG4746 Uncharacterized protein conserved in archaea [Function unknown]
Probab=35.36 E-value=19 Score=28.78 Aligned_cols=19 Identities=26% Similarity=0.697 Sum_probs=16.1
Q ss_pred cCCCCCCccccchhhHHhh
Q 037238 164 LSASDYPLVTQDDLLDAFS 182 (410)
Q Consensus 164 LSgsDyPLkt~~~i~~~fs 182 (410)
|-|.|||++++.+|...|-
T Consensus 16 ~k~a~fPInn~~eL~~ALP 34 (80)
T COG4746 16 LKGADFPINNPEELVAALP 34 (80)
T ss_pred HccCCCCCCCHHHHHHhcc
Confidence 4579999999999998763
No 64
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=33.81 E-value=3.1e+02 Score=24.49 Aligned_cols=91 Identities=18% Similarity=0.189 Sum_probs=51.0
Q ss_pred EEEeeccCCChHHHHHHHHHhhcC--CCceEEEeecCCChHHhhHHHHHhhcccceeecccEEEEeecceeeecCchhHH
Q 037238 65 AYLISGSVGDGNMIKRTLLALYHP--NNVYVVHLDRASSESERLDLQNFVNGFHLFNKFSNVKMITKANLVTYRGPTMVA 142 (410)
Q Consensus 65 AYLI~~hk~d~~~l~RLL~aLy~p--~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~ 142 (410)
..+|.+++ ..+.+.++|+.|... .+.-+|=+|..+.+.....++ . .+++++... .|.+.
T Consensus 2 svii~~~n-~~~~l~~~l~sl~~q~~~~~evivvdd~s~d~~~~~~~----------~-~~~~~~~~~-----~g~~~-- 62 (221)
T cd02522 2 SIIIPTLN-EAENLPRLLASLRRLNPLPLEIIVVDGGSTDGTVAIAR----------S-AGVVVISSP-----KGRAR-- 62 (221)
T ss_pred EEEEEccC-cHHHHHHHHHHHHhccCCCcEEEEEeCCCCccHHHHHh----------c-CCeEEEeCC-----cCHHH--
Confidence 45677776 677888888877532 234456668776554332221 1 466665432 23321
Q ss_pred hhHHHHHHHhhcCCCcceEEecCCCCCCccccchhhHHh
Q 037238 143 NTLHAAAVLLREGGDWDWFINLSASDYPLVTQDDLLDAF 181 (410)
Q Consensus 143 AtL~~~~~lL~~~~~wd~finLSgsDyPLkt~~~i~~~f 181 (410)
|--.+++.+ .-+|++++.+.++| +.+.+...+
T Consensus 63 a~n~g~~~a-----~~~~i~~~D~D~~~--~~~~l~~l~ 94 (221)
T cd02522 63 QMNAGAAAA-----RGDWLLFLHADTRL--PPDWDAAII 94 (221)
T ss_pred HHHHHHHhc-----cCCEEEEEcCCCCC--ChhHHHHHH
Confidence 211222222 24899999999988 455555543
No 65
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=33.26 E-value=2.1e+02 Score=25.70 Aligned_cols=97 Identities=12% Similarity=0.100 Sum_probs=53.1
Q ss_pred EeeccCCChHHHHHHHHHhhc------CCCceEEEeecCCChHHhhHHHHHhhcccceeeccc-EEEEeecceeeecCch
Q 037238 67 LISGSVGDGNMIKRTLLALYH------PNNVYVVHLDRASSESERLDLQNFVNGFHLFNKFSN-VKMITKANLVTYRGPT 139 (410)
Q Consensus 67 LI~~hk~d~~~l~RLL~aLy~------p~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~N-V~vv~~~~~V~wgg~S 139 (410)
+|.+++ ..+.+.++|+.+.. +.+.=+|-+|-.+++.-.+.++.+.+ ..++ |+++.... ..|.+
T Consensus 2 iip~yN-~~~~l~~~l~~l~~~~~~~~~~~~eiivvdd~S~D~t~~~~~~~~~------~~~~~i~~i~~~~---n~G~~ 71 (211)
T cd04188 2 VIPAYN-EEKRLPPTLEEAVEYLEERPSFSYEIIVVDDGSKDGTAEVARKLAR------KNPALIRVLTLPK---NRGKG 71 (211)
T ss_pred EEcccC-hHHHHHHHHHHHHHHHhccCCCCEEEEEEeCCCCCchHHHHHHHHH------hCCCcEEEEEccc---CCCcH
Confidence 455665 55666666665542 13444677888887665555555433 2333 46654322 23433
Q ss_pred hHHhhHHHHHHHhhcCCCcceEEecCCCCCCccccchhhHHhh
Q 037238 140 MVANTLHAAAVLLREGGDWDWFINLSASDYPLVTQDDLLDAFS 182 (410)
Q Consensus 140 ~V~AtL~~~~~lL~~~~~wd~finLSgsDyPLkt~~~i~~~fs 182 (410)
.|-..+++.+. -||++.+.+.+. .+.+.|...+.
T Consensus 72 --~a~~~g~~~a~-----gd~i~~ld~D~~--~~~~~l~~l~~ 105 (211)
T cd04188 72 --GAVRAGMLAAR-----GDYILFADADLA--TPFEELEKLEE 105 (211)
T ss_pred --HHHHHHHHHhc-----CCEEEEEeCCCC--CCHHHHHHHHH
Confidence 34444555442 289999998887 34555555444
No 66
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=32.78 E-value=5.1e+02 Score=25.82 Aligned_cols=107 Identities=12% Similarity=0.069 Sum_probs=61.0
Q ss_pred CCCceEEEeeccCCChHHHHHHHHHhhc-----CCCceEEEeecCCChHHhhHHHHHhhcccceeecccEEEEeecceee
Q 037238 60 PPPRFAYLISGSVGDGNMIKRTLLALYH-----PNNVYVVHLDRASSESERLDLQNFVNGFHLFNKFSNVKMITKANLVT 134 (410)
Q Consensus 60 ~~~kiAYLI~~hk~d~~~l~RLL~aLy~-----p~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~ 134 (410)
+.+++..+|-+++ +.+.+.++++++.. +.+.=+|=+|..|++.-.+.+++..+. ...+|..+...
T Consensus 4 ~~~~vSVVIP~yN-E~~~i~~~l~~l~~~~~~~~~~~EIIvVDDgS~D~T~~il~~~~~~-----~~~~v~~i~~~---- 73 (325)
T PRK10714 4 PIKKVSVVIPVYN-EQESLPELIRRTTAACESLGKEYEILLIDDGSSDNSAEMLVEAAQA-----PDSHIVAILLN---- 73 (325)
T ss_pred CCCeEEEEEcccC-chhhHHHHHHHHHHHHHhCCCCEEEEEEeCCCCCcHHHHHHHHHhh-----cCCcEEEEEeC----
Confidence 4567899999997 66777777766531 223345777877766655545443221 12355544211
Q ss_pred ecCchhHHhhHHHHHHHhhcCCCcceEEecCCCCCCccccchhhHHhhcC
Q 037238 135 YRGPTMVANTLHAAAVLLREGGDWDWFINLSASDYPLVTQDDLLDAFSYL 184 (410)
Q Consensus 135 wgg~S~V~AtL~~~~~lL~~~~~wd~finLSgsDyPLkt~~~i~~~fs~~ 184 (410)
.++..-.|-..+++.+ +-||++.+-+.+- .+.++|...+...
T Consensus 74 -~n~G~~~A~~~G~~~A-----~gd~vv~~DaD~q--~~p~~i~~l~~~~ 115 (325)
T PRK10714 74 -RNYGQHSAIMAGFSHV-----TGDLIITLDADLQ--NPPEEIPRLVAKA 115 (325)
T ss_pred -CCCCHHHHHHHHHHhC-----CCCEEEEECCCCC--CCHHHHHHHHHHH
Confidence 2333334444444443 3489998888776 3666666666543
No 67
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=32.57 E-value=4.1e+02 Score=24.65 Aligned_cols=106 Identities=10% Similarity=0.151 Sum_probs=67.0
Q ss_pred hHHHHHHHHHhhcCCCceEEEeecCC-ChHHhhHHHHHhhcccceeecccEEEEeecceeee--cCc-----hhHHhhHH
Q 037238 75 GNMIKRTLLALYHPNNVYVVHLDRAS-SESERLDLQNFVNGFHLFNKFSNVKMITKANLVTY--RGP-----TMVANTLH 146 (410)
Q Consensus 75 ~~~l~RLL~aLy~p~n~y~IHlD~ka-~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~w--gg~-----S~V~AtL~ 146 (410)
...+=..++|+=|...+++|..=+.. ...|...++ ..+||.+..-.....| ... ..+++.+.
T Consensus 36 TAAlGlalRAaG~G~rV~iiQFlKg~~~~GE~~~l~----------~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 105 (178)
T PRK07414 36 TSVMAQALRIAGQGTPVLIVQFLKGGIQQGPDRPIQ----------LGQNLDWVRCDLPRCLDTPHLDESEKKALQELWQ 105 (178)
T ss_pred HHHHHHHHHHhcCCCEEEEEEEecCCCcchHHHHHH----------hCCCcEEEECCCCCeeeCCCcCHHHHHHHHHHHH
Confidence 46777779999999999999998865 345554443 3467777643322223 222 12222333
Q ss_pred HHHHHhhcCCCcceEEe---cCCCCCCccccchhhHHhhcCCCCcccc
Q 037238 147 AAAVLLREGGDWDWFIN---LSASDYPLVTQDDLLDAFSYLPRDLNFI 191 (410)
Q Consensus 147 ~~~~lL~~~~~wd~fin---LSgsDyPLkt~~~i~~~fs~~~~~~NFI 191 (410)
-++.++. ..+||.+|+ +.+-+|=|.+-++++++++..|.+.+-|
T Consensus 106 ~a~~~l~-~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evI 152 (178)
T PRK07414 106 YTQAVVD-EGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVI 152 (178)
T ss_pred HHHHHHh-CCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEE
Confidence 3333443 367999986 6677788888888888888766665554
No 68
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=31.24 E-value=3.8e+02 Score=23.83 Aligned_cols=98 Identities=16% Similarity=0.146 Sum_probs=46.8
Q ss_pred CCceEEEeeccCCC--hHHHHHHHHHhhcCC-------------------CceEEEeecCC-----ChHHhhHHHHHhhc
Q 037238 61 PPRFAYLISGSVGD--GNMIKRTLLALYHPN-------------------NVYVVHLDRAS-----SESERLDLQNFVNG 114 (410)
Q Consensus 61 ~~kiAYLI~~hk~d--~~~l~RLL~aLy~p~-------------------n~y~IHlD~ka-----~~~~~~~l~~~v~~ 114 (410)
...+|||+.|..|. ......+++.|+-.+ +--++.++... ..++..++...+..
T Consensus 17 ~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~i~i~~ir~i~~~~~~ 96 (162)
T PF13177_consen 17 RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKSIKIDQIREIIEFLSL 96 (162)
T ss_dssp C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSSBSHHHHHHHHHHCTS
T ss_pred CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccchhhHHHHHHHHHHHHH
Confidence 46788888887554 234444555554211 11123333322 23333345444443
Q ss_pred ccceeecccEEEEeecceeeecCchhHHhhHHHHHHHhhcCCCcceEEecCC
Q 037238 115 FHLFNKFSNVKMITKANLVTYRGPTMVANTLHAAAVLLREGGDWDWFINLSA 166 (410)
Q Consensus 115 ~~~~~~~~NV~vv~~~~~V~wgg~S~V~AtL~~~~~lL~~~~~wd~finLSg 166 (410)
.+.. ....|.++.+.+ .|-....+++--.|.+.++--+||+++.
T Consensus 97 ~~~~-~~~KviiI~~ad-------~l~~~a~NaLLK~LEepp~~~~fiL~t~ 140 (162)
T PF13177_consen 97 SPSE-GKYKVIIIDEAD-------KLTEEAQNALLKTLEEPPENTYFILITN 140 (162)
T ss_dssp S-TT-SSSEEEEEETGG-------GS-HHHHHHHHHHHHSTTTTEEEEEEES
T ss_pred HHhc-CCceEEEeehHh-------hhhHHHHHHHHHHhcCCCCCEEEEEEEC
Confidence 3322 234566555443 4555555555555666667777777764
No 69
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=31.17 E-value=2.8e+02 Score=31.27 Aligned_cols=99 Identities=11% Similarity=0.148 Sum_probs=56.9
Q ss_pred CCCCceEEEeeccCCChHHHHHHHHH----hhcCCCceEEEe----ecCCChHHhhHHHHHhhcccceeecccEEEEeec
Q 037238 59 PPPPRFAYLISGSVGDGNMIKRTLLA----LYHPNNVYVVHL----DRASSESERLDLQNFVNGFHLFNKFSNVKMITKA 130 (410)
Q Consensus 59 ~~~~kiAYLI~~hk~d~~~l~RLL~a----Ly~p~n~y~IHl----D~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~ 130 (410)
...++++.+|=+|+ +.+.+.+++++ |+.|+- -|.+ |-..+. +++++. ...+|++++|...
T Consensus 68 ~~~~~vsIlVPa~n-E~~VI~~~v~~ll~~ldYp~~--~I~v~~~~nD~~T~---~~~~~~------~~~~p~~~~v~~~ 135 (703)
T PRK15489 68 RDEQPLAIMVPAWK-EYDVIAKMIENMLATLDYRRY--VIFVGTYPNDAETI---TEVERM------RRRYKRLVRVEVP 135 (703)
T ss_pred cCCCceEEEEeCCC-cHHHHHHHHHHHHhcCCCCCe--EEEEEecCCCccHH---HHHHHH------hccCCcEEEEEcC
Confidence 34579999999998 88888888776 356753 4444 322222 233322 1346788877533
Q ss_pred ceeeecCc-hhHHhhHHHHHHHhhc----CCCcceEEecCCCCCCccc
Q 037238 131 NLVTYRGP-TMVANTLHAAAVLLRE----GGDWDWFINLSASDYPLVT 173 (410)
Q Consensus 131 ~~V~wgg~-S~V~AtL~~~~~lL~~----~~~wd~finLSgsDyPLkt 173 (410)
. +|+ +--.|--.+++.+++. +..++.++..-+.|.|=-.
T Consensus 136 ~----~gp~gKa~ALN~~l~~~~~~e~~~~~~fa~vvi~DAEd~~~P~ 179 (703)
T PRK15489 136 H----DGPTCKADCLNWIIQAIFRYEAGHGIEFAGVILHDSEDVLHPL 179 (703)
T ss_pred C----CCCCCHHHHHHHHHHHHHhhhhhccCccceEEEEcCCCCCChh
Confidence 2 343 3333333344443321 3456778889999986433
No 70
>PF02472 ExbD: Biopolymer transport protein ExbD/TolR; InterPro: IPR003400 This group of proteins are membrane bound transport proteins essential for ferric ion uptake in bacteria []. The family consists of ExbD, and TolR which are involved in TonB-dependent transport of various receptor bound substrates including colicins [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2JWL_A 2JWK_A 2PFU_A.
Probab=30.47 E-value=98 Score=26.03 Aligned_cols=40 Identities=15% Similarity=0.277 Sum_probs=23.8
Q ss_pred ChHHHHHHHHHhh--cCCC-ceEEEeecCCChHHhhHHHHHhh
Q 037238 74 DGNMIKRTLLALY--HPNN-VYVVHLDRASSESERLDLQNFVN 113 (410)
Q Consensus 74 d~~~l~RLL~aLy--~p~n-~y~IHlD~ka~~~~~~~l~~~v~ 113 (410)
+.+.+...|+++. +|+. .+.|+.|++++.+.-.++-..++
T Consensus 74 ~~~~L~~~l~~~~~~~~~~~~v~i~aD~~~~y~~vv~vl~~l~ 116 (130)
T PF02472_consen 74 DLEELEARLKELKQKNPDPVRVLIRADKDAPYQDVVDVLDALR 116 (130)
T ss_dssp -CCCHHHHHHHHCCC-TTS--EEEEE-TTS-HHHHHHHHHHHH
T ss_pred chHHHHHHHHHhhccCCCcceEEEEeCCCCCHHHHHHHHHHHH
Confidence 3466777777775 4555 78899999888776555555443
No 71
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=29.42 E-value=3.7e+02 Score=23.14 Aligned_cols=87 Identities=14% Similarity=0.149 Sum_probs=49.7
Q ss_pred EEeeccCCChHHHHHHHHHhhcCC--CceEEEeecCCChHHhhHHHHHhhcccceeecccEEEEeecceeeecCchhHHh
Q 037238 66 YLISGSVGDGNMIKRTLLALYHPN--NVYVVHLDRASSESERLDLQNFVNGFHLFNKFSNVKMITKANLVTYRGPTMVAN 143 (410)
Q Consensus 66 YLI~~hk~d~~~l~RLL~aLy~p~--n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~A 143 (410)
.+|.+++ ..+.+.++|..|.... +.=+|=+|..+++.....++.+.+ . .+.++.. ..+| ...|
T Consensus 2 ivi~~~n-~~~~l~~~l~sl~~q~~~~~evivvDd~s~d~~~~~~~~~~~------~--~~~~~~~----~~~g--~~~a 66 (202)
T cd06433 2 IITPTYN-QAETLEETIDSVLSQTYPNIEYIVIDGGSTDGTVDIIKKYED------K--ITYWISE----PDKG--IYDA 66 (202)
T ss_pred EEEeccc-hHHHHHHHHHHHHhCCCCCceEEEEeCCCCccHHHHHHHhHh------h--cEEEEec----CCcC--HHHH
Confidence 3566776 6788999998885322 223566787776665554544211 1 2333332 2233 3334
Q ss_pred hHHHHHHHhhcCCCcceEEecCCCCCCcc
Q 037238 144 TLHAAAVLLREGGDWDWFINLSASDYPLV 172 (410)
Q Consensus 144 tL~~~~~lL~~~~~wd~finLSgsDyPLk 172 (410)
--.+++.+ +-||++.|.+.|.+..
T Consensus 67 ~n~~~~~a-----~~~~v~~ld~D~~~~~ 90 (202)
T cd06433 67 MNKGIALA-----TGDIIGFLNSDDTLLP 90 (202)
T ss_pred HHHHHHHc-----CCCEEEEeCCCcccCc
Confidence 33344432 3489999999998764
No 72
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=29.04 E-value=4e+02 Score=23.37 Aligned_cols=99 Identities=15% Similarity=0.039 Sum_probs=53.3
Q ss_pred EeeccCCChHHHHHHHHHhhc---C-CCceEEEeecCCChHHhhHHHHHhhcccceeecccEEEEeecceeeecCchhHH
Q 037238 67 LISGSVGDGNMIKRTLLALYH---P-NNVYVVHLDRASSESERLDLQNFVNGFHLFNKFSNVKMITKANLVTYRGPTMVA 142 (410)
Q Consensus 67 LI~~hk~d~~~l~RLL~aLy~---p-~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~ 142 (410)
+|-+++ +.+.+.++|+++.. | .++-+|=+|..+++.-.+.++.. ...|.+.. ...++| .-.
T Consensus 2 vIp~~n-e~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~~~~~~~---------~~~~~~~~---~~~~~g--k~~ 66 (183)
T cd06438 2 LIPAHN-EEAVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQVARAA---------GATVLERH---DPERRG--KGY 66 (183)
T ss_pred EEeccc-hHHHHHHHHHHHHhcCCCCcccEEEEEeCCCCchHHHHHHHc---------CCeEEEeC---CCCCCC--HHH
Confidence 566776 67888898888853 3 23335556766665433322211 11233221 122334 233
Q ss_pred hhHHHHHHHhhcCCCcceEEecCCCCCCccccchhhHHhh
Q 037238 143 NTLHAAAVLLREGGDWDWFINLSASDYPLVTQDDLLDAFS 182 (410)
Q Consensus 143 AtL~~~~~lL~~~~~wd~finLSgsDyPLkt~~~i~~~fs 182 (410)
|--.+++.+.+...+.||++.+-+.+.|- .+.|.+...
T Consensus 67 aln~g~~~a~~~~~~~d~v~~~DaD~~~~--p~~l~~l~~ 104 (183)
T cd06438 67 ALDFGFRHLLNLADDPDAVVVFDADNLVD--PNALEELNA 104 (183)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEcCCCCCC--hhHHHHHHH
Confidence 33345555543334689999998888863 555544443
No 73
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=28.22 E-value=2.1e+02 Score=26.34 Aligned_cols=105 Identities=23% Similarity=0.310 Sum_probs=53.2
Q ss_pred HHHHHHHHHhhcCCCceEEEeecC-CChHHhhHHHHHhhcccceeecccEEEEeecceeeecCc-h-----hHHhhHHHH
Q 037238 76 NMIKRTLLALYHPNNVYVVHLDRA-SSESERLDLQNFVNGFHLFNKFSNVKMITKANLVTYRGP-T-----MVANTLHAA 148 (410)
Q Consensus 76 ~~l~RLL~aLy~p~n~y~IHlD~k-a~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~-S-----~V~AtL~~~ 148 (410)
..+=-.++|+=|...++++..=+. ....|...++ ..+||.+..-.....|..- + .++.-++-+
T Consensus 19 AAlGlalRA~G~G~rV~ivQFlKg~~~~GE~~~l~----------~l~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~a 88 (172)
T PF02572_consen 19 AALGLALRAAGHGMRVLIVQFLKGGRYSGELKALK----------KLPNVEIERFGKGFVWRMNEEEEDRAAAREGLEEA 88 (172)
T ss_dssp HHHHHHHHHHCTT--EEEEESS--SS--HHHHHHG----------GGT--EEEE--TT----GGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEEEEecCCCCcCHHHHHH----------hCCeEEEEEcCCcccccCCCcHHHHHHHHHHHHHH
Confidence 566667889989999999999887 3344544443 4677877654444455433 2 223333333
Q ss_pred HHHhhcCCCcceEEe---cCCCCCCccccchhhHHhhcCCCCcccc
Q 037238 149 AVLLREGGDWDWFIN---LSASDYPLVTQDDLLDAFSYLPRDLNFI 191 (410)
Q Consensus 149 ~~lL~~~~~wd~fin---LSgsDyPLkt~~~i~~~fs~~~~~~NFI 191 (410)
+.++. +..||.+|+ +-+-+|=+.+.+++.+++...|...+-|
T Consensus 89 ~~~i~-~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evV 133 (172)
T PF02572_consen 89 KEAIS-SGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVV 133 (172)
T ss_dssp HHHTT--TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEE
T ss_pred HHHHh-CCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEE
Confidence 33333 467999886 5556667777788877777655544433
No 74
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=27.58 E-value=4.2e+02 Score=23.22 Aligned_cols=96 Identities=19% Similarity=0.320 Sum_probs=49.9
Q ss_pred EEeeccCCC-hHHHHHHHHHhhc---CCCceEEEeecCC-ChHHhhHHHHHhhcccceeecccEEEEeecceeeecCchh
Q 037238 66 YLISGSVGD-GNMIKRTLLALYH---PNNVYVVHLDRAS-SESERLDLQNFVNGFHLFNKFSNVKMITKANLVTYRGPTM 140 (410)
Q Consensus 66 YLI~~hk~d-~~~l~RLL~aLy~---p~n~y~IHlD~ka-~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~ 140 (410)
.+|-++.++ ++.+.++|+++.. +... +|=||-.+ ++...+-++.+.+ .. ++.++..... .|.
T Consensus 2 viip~~n~~~~~~l~~~l~Sl~~q~~~~~e-iiivdd~ss~d~t~~~~~~~~~------~~-~i~~i~~~~n---~G~-- 68 (201)
T cd04195 2 VLMSVYIKEKPEFLREALESILKQTLPPDE-VVLVKDGPVTQSLNEVLEEFKR------KL-PLKVVPLEKN---RGL-- 68 (201)
T ss_pred EEEEccccchHHHHHHHHHHHHhcCCCCcE-EEEEECCCCchhHHHHHHHHHh------cC-CeEEEEcCcc---ccH--
Confidence 355666433 4689999998864 3233 34455554 4443333333322 23 3666643221 232
Q ss_pred HHhhHHHHHHHhhcCCCcceEEecCCCCCCccccchhhHHh
Q 037238 141 VANTLHAAAVLLREGGDWDWFINLSASDYPLVTQDDLLDAF 181 (410)
Q Consensus 141 V~AtL~~~~~lL~~~~~wd~finLSgsDyPLkt~~~i~~~f 181 (410)
..|--.|++.+ +-||+++|.+.|++. .+.|...+
T Consensus 69 ~~a~N~g~~~a-----~gd~i~~lD~Dd~~~--~~~l~~~~ 102 (201)
T cd04195 69 GKALNEGLKHC-----TYDWVARMDTDDISL--PDRFEKQL 102 (201)
T ss_pred HHHHHHHHHhc-----CCCEEEEeCCccccC--cHHHHHHH
Confidence 22333333322 358999999999865 44444433
No 75
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=27.36 E-value=3.3e+02 Score=27.52 Aligned_cols=38 Identities=18% Similarity=0.177 Sum_probs=23.3
Q ss_pred cEEEEeecceeeecCchhHHhhHHHHHHHhhcCCCcceEEecCCC
Q 037238 123 NVKMITKANLVTYRGPTMVANTLHAAAVLLREGGDWDWFINLSAS 167 (410)
Q Consensus 123 NV~vv~~~~~V~wgg~S~V~AtL~~~~~lL~~~~~wd~finLSgs 167 (410)
.|.||.+.+ .|-.+.-+++--.|.+.++.-+||+++.+
T Consensus 115 kV~iI~~ae-------~m~~~AaNaLLKtLEEPp~~~~fiL~~~~ 152 (319)
T PRK08769 115 QVVIVDPAD-------AINRAACNALLKTLEEPSPGRYLWLISAQ 152 (319)
T ss_pred EEEEeccHh-------hhCHHHHHHHHHHhhCCCCCCeEEEEECC
Confidence 566665544 34444444444455667778888888864
No 76
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=26.92 E-value=4.2e+02 Score=24.83 Aligned_cols=106 Identities=19% Similarity=0.190 Sum_probs=69.1
Q ss_pred hHHHHHHHHHhhcCCCceEEEeecCC-ChHHhhHHHHHhhcccceeecccEEEEeecceeeecCc------hhHHhhHHH
Q 037238 75 GNMIKRTLLALYHPNNVYVVHLDRAS-SESERLDLQNFVNGFHLFNKFSNVKMITKANLVTYRGP------TMVANTLHA 147 (410)
Q Consensus 75 ~~~l~RLL~aLy~p~n~y~IHlD~ka-~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~------S~V~AtL~~ 147 (410)
...+---++|+-+...+.+|..=+.. ...|...++ ..+||.+..-.....|..- -..+..+.-
T Consensus 37 t~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~----------~l~~v~~~~~g~~~~~~~~~~~e~~~~~~~~~~~ 106 (191)
T PRK05986 37 TAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLE----------FGGGVEFHVMGTGFTWETQDRERDIAAAREGWEE 106 (191)
T ss_pred HHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHh----------cCCCcEEEECCCCCcccCCCcHHHHHHHHHHHHH
Confidence 35666778888898899999998865 345555443 2467887754443344321 223333444
Q ss_pred HHHHhhcCCCcceEEe---cCCCCCCccccchhhHHhhcCCCCcccc
Q 037238 148 AAVLLREGGDWDWFIN---LSASDYPLVTQDDLLDAFSYLPRDLNFI 191 (410)
Q Consensus 148 ~~~lL~~~~~wd~fin---LSgsDyPLkt~~~i~~~fs~~~~~~NFI 191 (410)
++.++. +.+||.+|+ +-+-+|=|.+.+++++++.+.|.+.+-|
T Consensus 107 a~~~l~-~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evV 152 (191)
T PRK05986 107 AKRMLA-DESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVV 152 (191)
T ss_pred HHHHHh-CCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEE
Confidence 444544 467999986 6677888889999999888766655544
No 77
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose. It is implicated in late Golgi modifications [][][]. The proteins matching this entry are conserved in fungi and also found in some phototrophic organisms.; GO: 0006486 protein glycosylation
Probab=25.52 E-value=2.6e+02 Score=27.26 Aligned_cols=99 Identities=17% Similarity=0.131 Sum_probs=55.6
Q ss_pred EEeeccCCChHHHHHHHHHhhcCCCce---EEEee-cCCChHHhhHHHHHhhcccceeecccEEEEee--cceeeecCch
Q 037238 66 YLISGSVGDGNMIKRTLLALYHPNNVY---VVHLD-RASSESERLDLQNFVNGFHLFNKFSNVKMITK--ANLVTYRGPT 139 (410)
Q Consensus 66 YLI~~hk~d~~~l~RLL~aLy~p~n~y---~IHlD-~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~--~~~V~wgg~S 139 (410)
.+|+++........++|+.|.+-+|.. ++|-. .+-+.+.+++|.. ..+|.++.- ...-.+.+..
T Consensus 4 IVi~~g~~~~~~a~~lI~~LR~~g~~LPIEI~~~~~~dl~~~~~~~l~~----------~q~v~~vd~~~~~~~~~~~~~ 73 (271)
T PF11051_consen 4 IVITAGDKYLWLALRLIRVLRRLGNTLPIEIIYPGDDDLSKEFCEKLLP----------DQDVWFVDASCVIDPDYLGKS 73 (271)
T ss_pred EEEEecCccHHHHHHHHHHHHHhCCCCCEEEEeCCccccCHHHHHHHhh----------hhhhheecceEEeeccccccc
Confidence 456666656777778888888766643 34442 3335555665543 223333210 0000111111
Q ss_pred hH--HhhHHHHHHHhhcCCCcceEEecCCCCCCccccchh
Q 037238 140 MV--ANTLHAAAVLLREGGDWDWFINLSASDYPLVTQDDL 177 (410)
Q Consensus 140 ~V--~AtL~~~~~lL~~~~~wd~finLSgsDyPLkt~~~i 177 (410)
.. .-.++.+|.+. ..++-+++|-+..+|+++.+.+
T Consensus 74 ~~~~~~~~K~lA~l~---ssFeevllLDaD~vpl~~p~~l 110 (271)
T PF11051_consen 74 FSKKGFQNKWLALLF---SSFEEVLLLDADNVPLVDPEKL 110 (271)
T ss_pred cccCCchhhhhhhhh---CCcceEEEEcCCcccccCHHHH
Confidence 11 22344455554 3589999999999999998876
No 78
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=25.44 E-value=3.3e+02 Score=23.01 Aligned_cols=94 Identities=15% Similarity=0.201 Sum_probs=58.6
Q ss_pred eEEEeeccCCChHHHHHHHHHhhcC-CCceEEEeecCCC-hHHhhHHHHHhhcccceeecccEEEEeecceeeecCchhH
Q 037238 64 FAYLISGSVGDGNMIKRTLLALYHP-NNVYVVHLDRASS-ESERLDLQNFVNGFHLFNKFSNVKMITKANLVTYRGPTMV 141 (410)
Q Consensus 64 iAYLI~~hk~d~~~l~RLL~aLy~p-~n~y~IHlD~ka~-~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V 141 (410)
+.++|.+|.+=.+-++..++-+.-+ .|.+.+-+....+ ++..+++++.++..+ .-..|-|+.+ ...|.+..+
T Consensus 2 ~~ili~sHG~~A~gl~~s~~~i~G~~~~i~~i~~~~~~~~~~~~~~l~~~i~~~~---~~~~vivltD---l~GGSp~n~ 75 (116)
T TIGR00824 2 IAIIISGHGQAAIALLKSAEMIFGEQNNVGAVPFVPGENAETLQEKYNAALADLD---TEEEVLFLVD---IFGGSPYNA 75 (116)
T ss_pred cEEEEEecHHHHHHHHHHHHHHcCCcCCeEEEEcCCCcCHHHHHHHHHHHHHhcC---CCCCEEEEEe---CCCCCHHHH
Confidence 3578888874456777778878743 4577777766554 446677777765422 2346776643 556666666
Q ss_pred HhhHHHHHHHhhcCCCcceEEecCCCCCCcc
Q 037238 142 ANTLHAAAVLLREGGDWDWFINLSASDYPLV 172 (410)
Q Consensus 142 ~AtL~~~~~lL~~~~~wd~finLSgsDyPLk 172 (410)
++.+ +.+. .-+..+||--+|+.
T Consensus 76 a~~~-----~~~~----~~~~vIsG~NLpml 97 (116)
T TIGR00824 76 AARI-----IVDK----PHMDVIAGVNLPLL 97 (116)
T ss_pred HHHH-----Hhhc----CCEEEEEecCHHHH
Confidence 5432 2221 23568999999884
No 79
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=24.97 E-value=3e+02 Score=23.16 Aligned_cols=92 Identities=13% Similarity=0.106 Sum_probs=55.9
Q ss_pred EEeeccCCChHHHHHHHHHhhcCC-CceEEEeecCCCh-HHhhHHHHHhhcccceeecccEEEEeecceeeecCchhHHh
Q 037238 66 YLISGSVGDGNMIKRTLLALYHPN-NVYVVHLDRASSE-SERLDLQNFVNGFHLFNKFSNVKMITKANLVTYRGPTMVAN 143 (410)
Q Consensus 66 YLI~~hk~d~~~l~RLL~aLy~p~-n~y~IHlD~ka~~-~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~A 143 (410)
++|.+|..=.+-+...++.+.-.+ +.+.+-+....+. ...+++.+.++..+ ....|-|+-+ ...|.+..+..
T Consensus 3 ili~sHG~~A~gi~~~~~~i~G~~~~i~~~~~~~~~~~~~~~~~i~~~i~~~~---~~~~viil~D---l~GGSp~n~~~ 76 (122)
T cd00006 3 IIIATHGGFASGLLNSAEMILGEQENVEAIDFPPGESPDDLLEKIKAALAELD---SGEGVLILTD---LFGGSPNNAAA 76 (122)
T ss_pred EEEEcCHHHHHHHHHHHHHhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhC---CCCcEEEEEe---CCCCCHHHHHH
Confidence 678888644577888888887444 6777777776544 45667777665422 2345666633 33444444333
Q ss_pred hHHHHHHHhhcCCCcceEEecCCCCCCcc
Q 037238 144 TLHAAAVLLREGGDWDWFINLSASDYPLV 172 (410)
Q Consensus 144 tL~~~~~lL~~~~~wd~finLSgsDyPLk 172 (410)
.+ + ... .-+..+||-+.|+.
T Consensus 77 ~~-----~-~~~---~~~~visG~nlpml 96 (122)
T cd00006 77 RL-----S-MEH---PPVEVIAGVNLPML 96 (122)
T ss_pred HH-----H-hcC---CCEEEEEccCHHHH
Confidence 22 2 211 34668999999984
No 80
>COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=23.57 E-value=4.4e+02 Score=26.31 Aligned_cols=92 Identities=18% Similarity=0.307 Sum_probs=54.0
Q ss_pred ChHHHHHHHHHhh-cCCCceEE-Eeec---CC--ChHHhhHHHHHhhcccceeecccEEEEeecceeeecCch-hHHhhH
Q 037238 74 DGNMIKRTLLALY-HPNNVYVV-HLDR---AS--SESERLDLQNFVNGFHLFNKFSNVKMITKANLVTYRGPT-MVANTL 145 (410)
Q Consensus 74 d~~~l~RLL~aLy-~p~n~y~I-HlD~---ka--~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S-~V~AtL 145 (410)
+++||..++..+. .|+-.++| |.-. +. ....++.|.... ..+||.+= -...+..++.+ -++...
T Consensus 145 ~~~ql~~~i~l~~~~Pd~~~VldH~G~p~~~~~~~~~w~~~m~~la-------~~pNv~~K-lSG~~~~~~~~w~~~~v~ 216 (279)
T COG3618 145 DPHQLPDLIPLALKAPDVNFVLDHCGRPDIKINLEDPWKAALARLA-------RRPNVWAK-LSGVYAYSDESWTVEDVR 216 (279)
T ss_pred ChhhhHHHHHHHhhCCCCCEEeccCCCCCccccccCHHHHHHHHHH-------hCCCeEEE-EeeecccccCCCCHHHHH
Confidence 4567766666543 67666555 3322 11 233466676543 46888862 22335556666 444444
Q ss_pred HHHHHHhhcCCCcceEEecCCCCCCccccch
Q 037238 146 HAAAVLLREGGDWDWFINLSASDYPLVTQDD 176 (410)
Q Consensus 146 ~~~~~lL~~~~~wd~finLSgsDyPLkt~~~ 176 (410)
--++.+.. .-.||.+|. |||+|..+...
T Consensus 217 p~~e~~i~-~fg~dR~vf--GSdwPv~~l~~ 244 (279)
T COG3618 217 PYVEELIE-LFGWDRFVF--GSDWPVTSLES 244 (279)
T ss_pred HHHHHHHH-hcCccceEe--cCCCCcccccC
Confidence 45555555 357899886 99999987654
No 81
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=23.06 E-value=5.7e+02 Score=23.15 Aligned_cols=104 Identities=13% Similarity=0.025 Sum_probs=56.1
Q ss_pred EEeeccCCChHHHHHHHHHhhcCC--CceEEEeecCCChHH-hhHHHHHhhcccceeecccEEEEeecceeeecCchhHH
Q 037238 66 YLISGSVGDGNMIKRTLLALYHPN--NVYVVHLDRASSESE-RLDLQNFVNGFHLFNKFSNVKMITKANLVTYRGPTMVA 142 (410)
Q Consensus 66 YLI~~hk~d~~~l~RLL~aLy~p~--n~y~IHlD~ka~~~~-~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~ 142 (410)
.+|-+|+.+++.|.++|..|.... +.=+|=+|..+++.. .+.+++..+. ...++.++.... ..|+ ...
T Consensus 2 iiip~~ne~~~~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~-----~~~~i~~i~~~~--~~G~--~~~ 72 (236)
T cd06435 2 IHVPCYEEPPEMVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVEAHCAQ-----LGERFRFFHVEP--LPGA--KAG 72 (236)
T ss_pred eeEeeCCCcHHHHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHHHHHHHH-----hCCcEEEEEcCC--CCCC--chH
Confidence 356778744578999988886421 233566676655443 3444443321 123676664322 2232 122
Q ss_pred hhHHHHHHHhhcCCCcceEEecCCCCCCccccchhhHHhhc
Q 037238 143 NTLHAAAVLLREGGDWDWFINLSASDYPLVTQDDLLDAFSY 183 (410)
Q Consensus 143 AtL~~~~~lL~~~~~wd~finLSgsDyPLkt~~~i~~~fs~ 183 (410)
|.-.+++.+ + .+.||++.+-+.+. .+.+.|.+.+..
T Consensus 73 a~n~g~~~a-~--~~~d~i~~lD~D~~--~~~~~l~~l~~~ 108 (236)
T cd06435 73 ALNYALERT-A--PDAEIIAVIDADYQ--VEPDWLKRLVPI 108 (236)
T ss_pred HHHHHHHhc-C--CCCCEEEEEcCCCC--cCHHHHHHHHHH
Confidence 223333333 1 24789998888875 466777666543
No 82
>COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only]
Probab=22.98 E-value=2.2e+02 Score=28.26 Aligned_cols=40 Identities=18% Similarity=0.204 Sum_probs=27.1
Q ss_pred CCceEEEeeccCCChHHHHHHHHHhhcCC----CceEEEeecCCC
Q 037238 61 PPRFAYLISGSVGDGNMIKRTLLALYHPN----NVYVVHLDRASS 101 (410)
Q Consensus 61 ~~kiAYLI~~hk~d~~~l~RLL~aLy~p~----n~y~IHlD~ka~ 101 (410)
+.+..| |.++.|+...+.+++++|...+ -...+-||..-+
T Consensus 45 ~iPTIf-IhGsgG~asS~~~Mv~ql~~~~~~~~e~Lt~~V~~dgs 88 (288)
T COG4814 45 AIPTIF-IHGSGGTASSLNGMVNQLLPDYKAGTESLTMTVDVDGS 88 (288)
T ss_pred ccceEE-EecCCCChhHHHHHHHHhhhcccccccceEEEEcCCCc
Confidence 344444 7899999999999999996433 234566665543
No 83
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=22.60 E-value=6.7e+02 Score=23.78 Aligned_cols=107 Identities=21% Similarity=0.197 Sum_probs=70.0
Q ss_pred hHHHHHHHHHhhcCCCceEEEeecCC-ChHHhhHHHHHhhcccceeecccEEEEeecceeeecCch------hHHhhHHH
Q 037238 75 GNMIKRTLLALYHPNNVYVVHLDRAS-SESERLDLQNFVNGFHLFNKFSNVKMITKANLVTYRGPT------MVANTLHA 147 (410)
Q Consensus 75 ~~~l~RLL~aLy~p~n~y~IHlD~ka-~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S------~V~AtL~~ 147 (410)
...+=-.++++=|.-..++|.+=+.. ...|+..+..+ -.+|.+..-..-++|.... ..++-+.-
T Consensus 43 TAAlG~alRa~GhG~rv~vvQFiKg~~~~GE~~~~~~~---------~~~v~~~~~~~g~tw~~~~~~~d~~aa~~~w~~ 113 (198)
T COG2109 43 TAALGLALRALGHGLRVGVVQFIKGGWKYGEEAALEKF---------GLGVEFHGMGEGFTWETQDREADIAAAKAGWEH 113 (198)
T ss_pred HHHHHHHHHHhcCCCEEEEEEEeecCcchhHHHHHHhh---------ccceeEEecCCceeCCCcCcHHHHHHHHHHHHH
Confidence 35666678888898888888887765 55566555431 2567777767778898763 23333333
Q ss_pred HHHHhhcCCCcceEEe---cCCCCCCccccchhhHHhhcCCCCcccc
Q 037238 148 AAVLLREGGDWDWFIN---LSASDYPLVTQDDLLDAFSYLPRDLNFI 191 (410)
Q Consensus 148 ~~~lL~~~~~wd~fin---LSgsDyPLkt~~~i~~~fs~~~~~~NFI 191 (410)
++.++. ++.||.+|+ .=+-.|=+.+.+|+...|...|.....|
T Consensus 114 a~~~l~-~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vI 159 (198)
T COG2109 114 AKEALA-DGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVI 159 (198)
T ss_pred HHHHHh-CCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEE
Confidence 344444 357998874 2233455678999999998777665554
No 84
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=22.34 E-value=5.3e+02 Score=22.49 Aligned_cols=49 Identities=8% Similarity=0.160 Sum_probs=32.1
Q ss_pred HHHHHHHHHhh--cCCCceEEEeecCCChHHhhHHHHHhhcccceeecccEEEEe
Q 037238 76 NMIKRTLLALY--HPNNVYVVHLDRASSESERLDLQNFVNGFHLFNKFSNVKMIT 128 (410)
Q Consensus 76 ~~l~RLL~aLy--~p~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~ 128 (410)
+++...|++.. +|+-..+|..|++++.+...++-..++.. .+.+|.++.
T Consensus 84 ~~L~~~L~~~~~~~~~~~V~I~aD~~~~~~~vv~vmd~l~~a----G~~~v~l~t 134 (141)
T PRK11267 84 ETMITALDALTEGKKDTTIFFRADKTVDYETLMKVMDTLHQA----GYLKIGLVG 134 (141)
T ss_pred HHHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHHHHHc----CCCeEEEEe
Confidence 55555566543 57777889999999887766665555432 345677654
No 85
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.95 E-value=6.7e+02 Score=27.63 Aligned_cols=98 Identities=23% Similarity=0.242 Sum_probs=56.5
Q ss_pred CCceEEEeeccCCChH--HHHHHHHHhhc----------------------CCCceEEEeecCC--ChHHhhHHHHHhhc
Q 037238 61 PPRFAYLISGSVGDGN--MIKRTLLALYH----------------------PNNVYVVHLDRAS--SESERLDLQNFVNG 114 (410)
Q Consensus 61 ~~kiAYLI~~hk~d~~--~l~RLL~aLy~----------------------p~n~y~IHlD~ka--~~~~~~~l~~~v~~ 114 (410)
.+.+|||+.|..|-+. ....+.++|+- +.+.-++-+|+.+ +.++..+|...+..
T Consensus 33 r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~ 112 (584)
T PRK14952 33 RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFY 112 (584)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHh
Confidence 4778999988766432 22334445541 1234466778865 34555556665655
Q ss_pred ccceeecccEEEEeecceeeecCchhHHhhHHHHHHHhhcCCCcceEEecCC
Q 037238 115 FHLFNKFSNVKMITKANLVTYRGPTMVANTLHAAAVLLREGGDWDWFINLSA 166 (410)
Q Consensus 115 ~~~~~~~~NV~vv~~~~~V~wgg~S~V~AtL~~~~~lL~~~~~wd~finLSg 166 (410)
.|... ...|.+|.+.+..+= ...+++-..+.+.++.-.||+++.
T Consensus 113 ~P~~~-~~KVvIIDEah~Lt~-------~A~NALLK~LEEpp~~~~fIL~tt 156 (584)
T PRK14952 113 APAQS-RYRIFIVDEAHMVTT-------AGFNALLKIVEEPPEHLIFIFATT 156 (584)
T ss_pred hhhcC-CceEEEEECCCcCCH-------HHHHHHHHHHhcCCCCeEEEEEeC
Confidence 55443 345888877554432 233333344555667888888874
No 86
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=20.17 E-value=6.5e+02 Score=24.98 Aligned_cols=98 Identities=14% Similarity=0.045 Sum_probs=61.1
Q ss_pred ChHHHHHHHHHhhcCCCceEEEeec--C---CChHHhhHHHHHhhcccceeecccEEEEeecceeeecCchhHHhhHHHH
Q 037238 74 DGNMIKRTLLALYHPNNVYVVHLDR--A---SSESERLDLQNFVNGFHLFNKFSNVKMITKANLVTYRGPTMVANTLHAA 148 (410)
Q Consensus 74 d~~~l~RLL~aLy~p~n~y~IHlD~--k---a~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~AtL~~~ 148 (410)
|.+.+.++++.+...+-.=++=.-. + -+.+||.++.+.+.. ...++|-|+ +.=++.| ..-+++.+
T Consensus 27 D~~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~----~~~grvpvi-----~Gv~~~~-t~~ai~~a 96 (309)
T cd00952 27 DLDETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVE----TVAGRVPVF-----VGATTLN-TRDTIART 96 (309)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHH----HhCCCCCEE-----EEeccCC-HHHHHHHH
Confidence 7899999999986544322222211 1 156788887665432 123445554 2222333 35666667
Q ss_pred HHHhhcCCCcceEEecCCCCCCccccchhhHHhhcC
Q 037238 149 AVLLREGGDWDWFINLSASDYPLVTQDDLLDAFSYL 184 (410)
Q Consensus 149 ~~lL~~~~~wd~finLSgsDyPLkt~~~i~~~fs~~ 184 (410)
+.+-+. .-|.+..+...-||. +++++.++|+..
T Consensus 97 ~~A~~~--Gad~vlv~~P~y~~~-~~~~l~~yf~~v 129 (309)
T cd00952 97 RALLDL--GADGTMLGRPMWLPL-DVDTAVQFYRDV 129 (309)
T ss_pred HHHHHh--CCCEEEECCCcCCCC-CHHHHHHHHHHH
Confidence 776654 468888888876775 789999999764
Done!