Query 037238
Match_columns 410
No_of_seqs 228 out of 863
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 17:17:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037238.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037238hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gak_A Beta-1,6-N-acetylglucos 100.0 4.8E-65 1.6E-69 518.6 8.9 281 57-355 79-388 (391)
2 3bcv_A Putative glycosyltransf 85.7 6.7 0.00023 34.7 11.0 101 61-181 4-106 (240)
3 4hg6_A Cellulose synthase subu 81.4 13 0.00045 40.4 13.1 106 58-181 136-260 (802)
4 4fix_A UDP-galactofuranosyl tr 77.3 9.1 0.00031 40.8 10.0 106 59-179 177-288 (657)
5 1qg8_A Protein (spore coat pol 75.9 11 0.00036 33.7 8.8 103 62-179 1-108 (255)
6 2d7i_A Polypeptide N-acetylgal 74.4 12 0.00041 38.8 9.8 102 59-178 109-215 (570)
7 2z86_A Chondroitin synthase; G 68.3 23 0.00078 36.6 10.3 100 61-179 92-194 (625)
8 1xhb_A Polypeptide N-acetylgal 67.9 22 0.00074 35.4 9.7 102 59-179 26-134 (472)
9 2z86_A Chondroitin synthase; G 66.6 37 0.0013 35.0 11.5 102 60-181 373-476 (625)
10 2ffu_A Ppgalnact-2, polypeptid 60.3 34 0.0012 34.4 9.6 101 59-181 63-168 (501)
11 1ezi_A CMP-N-acetylneuraminic 45.9 1.1E+02 0.0037 26.8 9.5 90 76-183 30-121 (228)
12 3ckj_A Putative uncharacterize 32.0 1.9E+02 0.0066 27.0 9.4 108 60-182 46-158 (329)
13 1qwj_A Cytidine monophospho-N- 29.5 2.1E+02 0.007 25.1 8.6 25 157-182 94-118 (229)
14 3iek_A Ribonuclease TTHA0252; 23.5 29 0.00097 34.7 1.7 46 60-109 367-414 (431)
15 1iio_A Conserved hypothetical 23.3 22 0.00076 27.8 0.6 18 164-181 20-37 (84)
16 1jsd_A Haemagglutinin (HA1 cha 22.9 32 0.0011 33.3 1.8 43 156-199 74-122 (319)
17 2i7t_A Cleavage and polyadenyl 21.0 35 0.0012 34.0 1.8 40 68-109 393-432 (459)
18 3ku3_A Hemagglutinin HA1 chain 20.3 39 0.0013 32.9 1.8 44 155-199 75-124 (327)
No 1
>2gak_A Beta-1,6-N-acetylglucosaminyltransferase; glycoprotein, CIS-peptide, dimer; HET: NAG; 2.00A {Mus musculus} PDB: 2gam_A* 3otk_A*
Probab=100.00 E-value=4.8e-65 Score=518.59 Aligned_cols=281 Identities=23% Similarity=0.318 Sum_probs=240.0
Q ss_pred CCCCCCceEEEeeccCCChHHHHHHHHHhhcCCCceEEEeecCCChHHhhHHHHHhhcccceeecccEEEEeecceeeec
Q 037238 57 LLPPPPRFAYLISGSVGDGNMIKRTLLALYHPNNVYVVHLDRASSESERLDLQNFVNGFHLFNKFSNVKMITKANLVTYR 136 (410)
Q Consensus 57 ~~~~~~kiAYLI~~hk~d~~~l~RLL~aLy~p~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wg 136 (410)
.++.+++|||+|++|+ |+++++||++++|||+|+||||+|++++..++.+++.. ..+++||+|++++..|.||
T Consensus 79 ~~e~~~kiAflil~h~-d~~~l~rll~~ly~p~n~y~IHvD~ks~~~~~~~~~~~------~~~f~NV~v~~~~~~v~WG 151 (391)
T 2gak_A 79 KEEVGFPIAYSIVVHH-KIEMLDRLLRAIYMPQNFYCIHVDRKAEESFLAAVQGI------ASCFDNVFVASQLESVVYA 151 (391)
T ss_dssp HHHHTSCEEEEEEECS-CHHHHHHHHHHHCCTTSEEEEEECTTSCHHHHHHHHHH------HHTCTTEEECSSCCCCCTT
T ss_pred ccccCCCEEEEEEecC-CHHHHHHHHHHHhCCCCeEEEEEeCCCCHHHHHHHHHH------HhcCCCEEEeccCcccccC
Confidence 3455799999999997 99999999999999999999999999998887776542 3478999999999999999
Q ss_pred CchhHHhhHHHHHHHhhcCCCcceEEecCCCCCCccccchhhHHhhcCCCCcccccccCccccccccccc--ceeeCCCC
Q 037238 137 GPTMVANTLHAAAVLLREGGDWDWFINLSASDYPLVTQDDLLDAFSYLPRDLNFIDHTSNIGWKEFQRAK--PIIIDPGL 214 (410)
Q Consensus 137 g~S~V~AtL~~~~~lL~~~~~wd~finLSgsDyPLkt~~~i~~~fs~~~~~~NFIe~~~~~~wk~~~R~~--~~i~dpgl 214 (410)
|+|||+|+|+||+.||+.+.+|||||||||+||||+|+++|.++|+.+ +|+|||++.++.+|++. |.+ +.+.++++
T Consensus 152 g~S~v~A~l~ll~~aL~~~~~w~yfilLSgsD~PLkt~~~i~~~l~~~-~~~nFIe~~~~~~~~~~-R~~~~~~~~~~~l 229 (391)
T 2gak_A 152 SWTRVKADLNCMKDLYRMNANWKYLINLCGMDFPIKTNLEIVRKLKCS-TGENNLETEKMPPNKEE-RWKKRYAVVDGKL 229 (391)
T ss_dssp SHHHHHHHHHHHHHHHHHCSCCCEEEEEETTCEESSCHHHHHHHHHHT-TTCCBCCBEECCGGGSH-HHHEEEEEETTEE
T ss_pred CchHHHHHHHHHHHHHhcCCCCCEEEEecCCCccccCHHHHHHHHHhc-CCCceeeccCCCccccc-ceEeeeeccccce
Confidence 999999999999999998789999999999999999999999999875 78999999988888754 332 22334432
Q ss_pred ccccCCceEEEeeecccccchhhccccchhhhhhhhhhhhhcccCCccceeehhhcccccCCCcceEEeecCc-------
Q 037238 215 YMSKKADVFWVTQKRSVPSAFKLFTGSAWMALSRSFIDYCIWGWDNLPRTVLMYYANFLSSPEGYFHTVICNA------- 287 (410)
Q Consensus 215 y~~~k~~~~~~~~kR~~P~~~~l~~GS~W~~LsR~fvey~i~~~dn~pr~ll~yf~~~~~pdE~yFqTvl~Ns------- 287 (410)
..+..++|.+|+++++++|||||+|||+||+||+. |++++++++||+++++|||+||||++.|+
T Consensus 230 -------~~~~~~k~~~P~~~~~~~GSqW~~LtR~~v~~vl~--d~~~~~~~~~~k~t~~pDE~ffqTll~~~~~pg~~~ 300 (391)
T 2gak_A 230 -------TNTGIVKAPPPLKTPLFSGSAYFVVTREYVGYVLE--NENIQKLMEWAQDTYSPDEFLWATIQRIPEVPGSFP 300 (391)
T ss_dssp -------EEEEEECCCCSCSSCCEECCSCCEEEHHHHHHHHH--CHHHHHHHHHHTTSSSGGGTHHHHHTTSTTSTTCCC
T ss_pred -------eeecccccCCccccceecccceeEecHHHHHHHHh--CCcHHHHHHHHcCCcCCchhHHHHHhhccCCCCccc
Confidence 23456788889999999999999999999999997 66678889999999999999999997653
Q ss_pred --cccccccccccceeeecCCCCC------CCCc----------ccchhhhhhhhhCCCcccccCCC--CCcchhhhhHH
Q 037238 288 --QEFRNTTVNSDLHFISWDNPPK------QHPH----------YLNLADMQRMVDSNAPFARKFPR--EDPVLDKIDSE 347 (410)
Q Consensus 288 --~~f~~t~vn~~LRyi~W~~~~~------~hP~----------~l~~~D~~~l~~S~alFARKF~~--dd~vld~Id~~ 347 (410)
..|+++++|+++|||+|+++.+ .||. +|+.+|+++|.+|+++|||||++ |++|++|||+.
T Consensus 301 ~~~~~~~~~~~~~lr~i~W~~~~g~~~~G~p~p~c~~~~~~~~C~~~~~Dl~~l~~s~~lFARKF~~~~d~~~l~~l~~~ 380 (391)
T 2gak_A 301 SSNKYDLSDMNAIARFVKWQYFEGDVSNGAPYPPCSGVHVRSVCVFGAGDLSWMLRQHHLFANKFDMDVDPFAIQCLDEH 380 (391)
T ss_dssp SSGGGCBCTTTSSSEEECBTTTCSCGGGTCSSCCCSSEEETTEEECCGGGHHHHTTSCCSEEECCCTTTCHHHHHHHHHH
T ss_pred cccccccccccCceEEEEecccCCccccCCCCCCCccceecceeeecHHHHHHHHhCCCceEEccCCccCHHHHHHHHHH
Confidence 3456677899999999985322 2443 89999999999999999999997 56899999999
Q ss_pred hhcCCCCC
Q 037238 348 LLSRNPGM 355 (410)
Q Consensus 348 ll~r~~~~ 355 (410)
|.+|...+
T Consensus 381 l~~r~~~~ 388 (391)
T 2gak_A 381 LRRKALEN 388 (391)
T ss_dssp HHHHHHC-
T ss_pred Hhhhhhcc
Confidence 98876443
No 2
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=85.69 E-value=6.7 Score=34.68 Aligned_cols=101 Identities=15% Similarity=0.268 Sum_probs=64.5
Q ss_pred CCceEEEeeccCCChHHHHHHHHHhhcC--CCceEEEeecCCChHHhhHHHHHhhcccceeecccEEEEeecceeeecCc
Q 037238 61 PPRFAYLISGSVGDGNMIKRTLLALYHP--NNVYVVHLDRASSESERLDLQNFVNGFHLFNKFSNVKMITKANLVTYRGP 138 (410)
Q Consensus 61 ~~kiAYLI~~hk~d~~~l~RLL~aLy~p--~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~ 138 (410)
.|++..+|.+++ ..+.|.++|+.|... .+.=+|=+|-.+++...+.++.+.+ ..++|.++...+ .|
T Consensus 4 ~p~vsViIp~yn-~~~~l~~~l~Sl~~q~~~~~eiIvvDd~S~d~t~~~~~~~~~------~~~~i~~i~~~n----~G- 71 (240)
T 3bcv_A 4 IPKVSVIVPIYN-VEKYLDQCVQALLAQTLSDIEIILIDDESPDNCPKICDDYAA------QYPNIKVIHKKN----AG- 71 (240)
T ss_dssp CCSEEEEEEESS-CTTTHHHHHHHHHTCSSSSEEEEEEECCCSSSHHHHHHHHHH------HCSSEEEEECCC----CC-
T ss_pred CCcEEEEEecCC-CHHHHHHHHHHHHhCcCCCeEEEEEECCCCcCHHHHHHHHHh------hCCCEEEEECCC----CC-
Confidence 478999999997 678999999998632 1333566787776665555555432 457899886432 33
Q ss_pred hhHHhhHHHHHHHhhcCCCcceEEecCCCCCCccccchhhHHh
Q 037238 139 TMVANTLHAAAVLLREGGDWDWFINLSASDYPLVTQDDLLDAF 181 (410)
Q Consensus 139 S~V~AtL~~~~~lL~~~~~wd~finLSgsDyPLkt~~~i~~~f 181 (410)
...|--.+++.+ .=+|++.|-+.|++ ..+.|...+
T Consensus 72 -~~~a~N~g~~~a-----~g~~i~~lD~Dd~~--~~~~l~~l~ 106 (240)
T 3bcv_A 72 -LGMACNSGLDVA-----TGEYVAFCDSDDYV--DSDMYMTMY 106 (240)
T ss_dssp -HHHHHHHHHHHC-----CSSEEEECCTTCCC--CTTHHHHHH
T ss_pred -hHHHHHHHHHHc-----CCCEEEEECCCCcC--CHHHHHHHH
Confidence 333333344443 23899999999986 444444443
No 3
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=81.43 E-value=13 Score=40.36 Aligned_cols=106 Identities=20% Similarity=0.206 Sum_probs=59.0
Q ss_pred CCCCCceEEEeeccCCChHHHHHHHHHhh---cCCC-ceEEEeecCCChHH---------------hhHHHHHhhcccce
Q 037238 58 LPPPPRFAYLISGSVGDGNMIKRTLLALY---HPNN-VYVVHLDRASSESE---------------RLDLQNFVNGFHLF 118 (410)
Q Consensus 58 ~~~~~kiAYLI~~hk~d~~~l~RLL~aLy---~p~n-~y~IHlD~ka~~~~---------------~~~l~~~v~~~~~~ 118 (410)
++..|++..+|-+++.+.+.+.++|+++. .|+. .-+|=+|..+++.. +..++.+.+
T Consensus 136 ~~~~P~VSViIPtyNe~~~lL~~~L~Sl~~q~yp~~~~eIiVVDDgStD~T~~~~d~~i~~~~~~~~~~l~~~~~----- 210 (802)
T 4hg6_A 136 PEELPTVDILVPSYNEPADMLSVTLAAAKNMIYPARLRTVVLCDDGGTDQRCMSPDPELAQKAQERRRELQQLCR----- 210 (802)
T ss_dssp TTTCCCEEEEEECTTCCHHHHHHHHHHHHTSSCCTTCCEEEEESTTCHHHHHTCSSHHHHHHHHHHHHHHHHHHH-----
T ss_pred ccCCCcEEEEEEECCCCHHHHHHHHHHHHhccCCCCcEEEEEEECCCCccccccCCHHHHHHHHhhhHHHHHHHH-----
Confidence 34457999999999855455588888873 3443 34566776654433 223333221
Q ss_pred eecccEEEEeecceeeecCchhHHhhHHHHHHHhhcCCCcceEEecCCCCCCccccchhhHHh
Q 037238 119 NKFSNVKMITKANLVTYRGPTMVANTLHAAAVLLREGGDWDWFINLSASDYPLVTQDDLLDAF 181 (410)
Q Consensus 119 ~~~~NV~vv~~~~~V~wgg~S~V~AtL~~~~~lL~~~~~wd~finLSgsDyPLkt~~~i~~~f 181 (410)
..++.++.... .++| ...| +..+++.. +-||++.+-+.|.+ +.+.+.+..
T Consensus 211 --~~~v~~i~~~~--~~~G--Ka~a----lN~gl~~a-~gd~Il~lDaD~~~--~pd~L~~lv 260 (802)
T 4hg6_A 211 --ELGVVYSTRER--NEHA--KAGN----MSAALERL-KGELVVVFDADHVP--SRDFLARTV 260 (802)
T ss_dssp --HHTCEEEECSS--CCSH--HHHH----HHHHHHHC-CCSEEEECCTTEEE--CTTHHHHHH
T ss_pred --hcCcEEEEecC--CCCc--chHH----HHHHHHhc-CCCEEEEECCCCCc--ChHHHHHHH
Confidence 23566664332 2222 2222 22333322 46999999999976 455554433
No 4
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=77.25 E-value=9.1 Score=40.77 Aligned_cols=106 Identities=14% Similarity=0.040 Sum_probs=68.0
Q ss_pred CCCCceEEEeeccCCChHHHHHHHHHhhcC-----CCceEEEeecCCChH-HhhHHHHHhhcccceeecccEEEEeecce
Q 037238 59 PPPPRFAYLISGSVGDGNMIKRTLLALYHP-----NNVYVVHLDRASSES-ERLDLQNFVNGFHLFNKFSNVKMITKANL 132 (410)
Q Consensus 59 ~~~~kiAYLI~~hk~d~~~l~RLL~aLy~p-----~n~y~IHlD~ka~~~-~~~~l~~~v~~~~~~~~~~NV~vv~~~~~ 132 (410)
+.+|+++.+|.+++ ..+.+.++|.+|... .+.=+|=||-.+++. ....+.+.++ ...++|.++...+
T Consensus 177 ~~~pkVSVVIptYN-~~~~L~~~L~SL~~qt~~~~~~~EIIVVDNgStD~s~~~~~~e~~~-----~~~~~I~vI~~~N- 249 (657)
T 4fix_A 177 PGTANIAVGIPTFN-RPADCVNALRELTADPLVDQVIGAVIVPDQGERKVRDHPDFPAAAA-----RLGSRLSIHDQPN- 249 (657)
T ss_dssp CSCCCEEEECCBSS-CHHHHHHHHHHHTTSHHHHTTEEEEEEEECSSSCGGGSTTHHHHHH-----HHGGGEEEEECCC-
T ss_pred CCCCeEEEEEEecC-CHHHHHHHHHHHHcCccccCCCCEEEEEECcCCCccchHHHHHHHH-----hcCCCEEEEECCC-
Confidence 45689999999997 788999999998642 232478888877542 2223333222 1346899986542
Q ss_pred eeecCchhHHhhHHHHHHHhhcCCCcceEEecCCCCCCccccchhhH
Q 037238 133 VTYRGPTMVANTLHAAAVLLREGGDWDWFINLSASDYPLVTQDDLLD 179 (410)
Q Consensus 133 V~wgg~S~V~AtL~~~~~lL~~~~~wd~finLSgsDyPLkt~~~i~~ 179 (410)
- | ...|--.+++.+.... +.||+++|-+.+.+- .+.|..
T Consensus 250 --~-G--~a~a~N~Gl~~A~g~~-~~dyIlfLD~D~~~~--pd~L~~ 288 (657)
T 4fix_A 250 --L-G--GSGGYSRVMYEALKNT-DCQQILFMDDDIRLE--PDSILR 288 (657)
T ss_dssp --C-H--HHHHHHHHHHHHHHHC-CCSEEEEECSSEEEC--THHHHH
T ss_pred --C-C--HHHHHHHHHHHHHhcC-CCCEEEEECCCCccC--hhHHHH
Confidence 1 2 2334556777776542 579999998888754 444433
No 5
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=75.89 E-value=11 Score=33.74 Aligned_cols=103 Identities=11% Similarity=0.172 Sum_probs=63.5
Q ss_pred CceEEEeeccCCChHHHHHHHHHhhcCC--CceEEEeecCCChHHhhHHHHHhhcccceeecccEEEEeeccee---eec
Q 037238 62 PRFAYLISGSVGDGNMIKRTLLALYHPN--NVYVVHLDRASSESERLDLQNFVNGFHLFNKFSNVKMITKANLV---TYR 136 (410)
Q Consensus 62 ~kiAYLI~~hk~d~~~l~RLL~aLy~p~--n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V---~wg 136 (410)
|++..+|.+++ ..+.+.++|+.|.... +.=+|=+|-.+++...+.++.+. ..++|.++.....- .+.
T Consensus 1 p~vSViIp~yn-~~~~l~~~l~Sl~~q~~~~~eiivvDd~S~d~t~~~~~~~~-------~~~~i~~i~~~~~~~~~~~~ 72 (255)
T 1qg8_A 1 PKVSVIMTSYN-KSDYVAKSISSILSQTFSDFELFIMDDNSNEETLNVIRPFL-------NDNRVRFYQSDISGVKERTE 72 (255)
T ss_dssp CCEEEEEEESS-CTTTHHHHHHHHHTCSCCCEEEEEEECSCCHHHHHHHGGGG-------GSTTEEEEECCCCSHHHHHS
T ss_pred CeEEEEEEcCC-CHHHHHHHHHHHHhccCCceEEEEEECCCCchHHHHHHHHh-------hcCCEEEEeccccccccccc
Confidence 57889999987 6789999999886321 33467778777766555444332 25689888643100 001
Q ss_pred CchhHHhhHHHHHHHhhcCCCcceEEecCCCCCCccccchhhH
Q 037238 137 GPTMVANTLHAAAVLLREGGDWDWFINLSASDYPLVTQDDLLD 179 (410)
Q Consensus 137 g~S~V~AtL~~~~~lL~~~~~wd~finLSgsDyPLkt~~~i~~ 179 (410)
..+...|--.+++.+ .-+|++.|.+.|++ ..+.|..
T Consensus 73 n~G~~~a~N~gi~~a-----~g~~i~~lD~Dd~~--~~~~l~~ 108 (255)
T 1qg8_A 73 KTRYAALINQAIEMA-----EGEYITYATDDNIY--MPDRLLK 108 (255)
T ss_dssp SCHHHHHHHHHHHHC-----CCSEEEEEETTEEE--CTTHHHH
T ss_pred ccCHHHHHHHHHHHc-----CCCEEEEeCCCCcc--ChHHHHH
Confidence 334444444455543 34899999999986 3444433
No 6
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=74.41 E-value=12 Score=38.80 Aligned_cols=102 Identities=16% Similarity=0.210 Sum_probs=67.3
Q ss_pred CCCCceEEEeeccCCChHHHHHHHHHhhc--CCCc--eEEEeecCCChHH-hhHHHHHhhcccceeecccEEEEeeccee
Q 037238 59 PPPPRFAYLISGSVGDGNMIKRTLLALYH--PNNV--YVVHLDRASSESE-RLDLQNFVNGFHLFNKFSNVKMITKANLV 133 (410)
Q Consensus 59 ~~~~kiAYLI~~hk~d~~~l~RLL~aLy~--p~n~--y~IHlD~ka~~~~-~~~l~~~v~~~~~~~~~~NV~vv~~~~~V 133 (410)
+..|++..+|.+++...+.|.+.|..+.. +.+. =+|=||-.|++.. .+.++.+++ ..++|+++....
T Consensus 109 ~~~P~vSVIIp~yNe~~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D~tl~~~l~~~~~------~~~~v~vi~~~~-- 180 (570)
T 2d7i_A 109 ETLPNTSIIIPFHNEGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPLEDYMA------LFPSVRILRTKK-- 180 (570)
T ss_dssp SSCCCEEEEEEESSCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCCCGGGTHHHHHHHT------TSTTEEEEECSS--
T ss_pred CCCCCeEEEEEECCCCHHHHHHHHHHHHhcCCccCcEEEEEEECCCCcHHHHHHHHHHHH------hCCeEEEEECCC--
Confidence 34688999999997334889999888752 2232 3677887777665 666666543 357899986432
Q ss_pred eecCchhHHhhHHHHHHHhhcCCCcceEEecCCCCCCccccchhh
Q 037238 134 TYRGPTMVANTLHAAAVLLREGGDWDWFINLSASDYPLVTQDDLL 178 (410)
Q Consensus 134 ~wgg~S~V~AtL~~~~~lL~~~~~wd~finLSgsDyPLkt~~~i~ 178 (410)
......|-..+++.+ .=||+++|-+.|.+ +.+.|.
T Consensus 181 ---n~G~~~A~N~G~~~A-----~gd~i~fLD~D~~~--~p~~L~ 215 (570)
T 2d7i_A 181 ---REGLIRTRMLGASVA-----TGDVITFLDSHCEA--NVNWLP 215 (570)
T ss_dssp ---CCCHHHHHHHHHHHC-----CSSEEEECCSSEEE--CTTCSH
T ss_pred ---CCCHHHHHHHHHHhc-----CCCEEEEEcCCccc--cccHHH
Confidence 234556666666654 23899999988887 444443
No 7
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=68.28 E-value=23 Score=36.63 Aligned_cols=100 Identities=15% Similarity=0.164 Sum_probs=62.8
Q ss_pred CCceEEEeeccCCChHHHHHHHHHhhcC---CCceEEEeecCCChHHhhHHHHHhhcccceeecccEEEEeecceeeecC
Q 037238 61 PPRFAYLISGSVGDGNMIKRTLLALYHP---NNVYVVHLDRASSESERLDLQNFVNGFHLFNKFSNVKMITKANLVTYRG 137 (410)
Q Consensus 61 ~~kiAYLI~~hk~d~~~l~RLL~aLy~p---~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg 137 (410)
.|++..+|.+++ ..+.+.++|.+|... .+.=+|=+|-.+++...+.++.+ ....+|.++.... .|
T Consensus 92 ~p~vsviIp~~n-~~~~l~~~l~sl~~q~~~~~~eiivvDd~s~d~t~~~~~~~-------~~~~~i~~i~~~~----~~ 159 (625)
T 2z86_A 92 IDGLSIVIPTYN-RAKILAITLACLCNQKTIYDYEVIVADDGSKENIEEIVREF-------ESLLNIKYVRQKD----YG 159 (625)
T ss_dssp CCCEEEEEEESS-CHHHHHHHHHHHHTCCCSSCEEEEEEEESCSSCHHHHHHTT-------TTTSCEEEEEECC----CS
T ss_pred CCcEEEEEecCC-cHHHHHHHHHHHHhhccCCCeEEEEEeCCCchhHHHHHHHh-------hhcCCeEEEEeCC----CC
Confidence 378999999997 789999999998632 23335666766655544444332 1235788876432 24
Q ss_pred chhHHhhHHHHHHHhhcCCCcceEEecCCCCCCccccchhhH
Q 037238 138 PTMVANTLHAAAVLLREGGDWDWFINLSASDYPLVTQDDLLD 179 (410)
Q Consensus 138 ~S~V~AtL~~~~~lL~~~~~wd~finLSgsDyPLkt~~~i~~ 179 (410)
.+...|--.+++.+ .-||++.|-+.+.+ +.+.|..
T Consensus 160 ~g~~~a~N~g~~~a-----~g~~v~~lD~D~~~--~~~~l~~ 194 (625)
T 2z86_A 160 YQLCAVRNLGLRAA-----KYNYVAILDCDMAP--NPLWVQS 194 (625)
T ss_dssp CCHHHHHHHHHHHC-----CSSEEEEECTTEEE--CTTHHHH
T ss_pred cchhHHHHHHHHhC-----CcCEEEEECCCCCC--CHHHHHH
Confidence 34445544455543 35899999998887 4444433
No 8
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=67.93 E-value=22 Score=35.42 Aligned_cols=102 Identities=22% Similarity=0.198 Sum_probs=65.3
Q ss_pred CCCCceEEEeeccCCCh-HHHHHHHHHhhc--CCC--ceEEEeecCCChH-HhhHHHHHhhcccceeecc-cEEEEeecc
Q 037238 59 PPPPRFAYLISGSVGDG-NMIKRTLLALYH--PNN--VYVVHLDRASSES-ERLDLQNFVNGFHLFNKFS-NVKMITKAN 131 (410)
Q Consensus 59 ~~~~kiAYLI~~hk~d~-~~l~RLL~aLy~--p~n--~y~IHlD~ka~~~-~~~~l~~~v~~~~~~~~~~-NV~vv~~~~ 131 (410)
+..|++..+|.+|+ .. +.+.++|.+|.. +.+ .=+|=||-.+++. ..+.++++++ .++ +|+++....
T Consensus 26 ~~~p~vSVIIp~yN-~~~~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~t~~~l~~~~~------~~~~~v~vi~~~~ 98 (472)
T 1xhb_A 26 DNLPTTSVVIVFHN-EAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYVK------KLKVPVHVIRMEQ 98 (472)
T ss_dssp SCCCCEEEEEEESS-CCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHHHHH------SSSSCEEEEECSS
T ss_pred cCCCCeEEEEEeCC-CCHHHHHHHHHHHHhcCcHhHceEEEEEECCCCcHHHHHHHHHHHH------HCCCcEEEEECCC
Confidence 34688999999997 55 899999998863 223 2367788777653 4555655543 356 799886432
Q ss_pred eeeecCchhHHhhHHHHHHHhhcCCCcceEEecCCCCCCccccchhhH
Q 037238 132 LVTYRGPTMVANTLHAAAVLLREGGDWDWFINLSASDYPLVTQDDLLD 179 (410)
Q Consensus 132 ~V~wgg~S~V~AtL~~~~~lL~~~~~wd~finLSgsDyPLkt~~~i~~ 179 (410)
. .....|-..+++.+ .-||++.|-+.|.+ +.+.|..
T Consensus 99 n-----~G~~~a~N~g~~~A-----~gd~i~flD~D~~~--~p~~L~~ 134 (472)
T 1xhb_A 99 R-----SGLIRARLKGAAVS-----RGQVITFLDAHCEC--TAGWLEP 134 (472)
T ss_dssp C-----CCHHHHHHHHHHHC-----CSSEEEEEESSEEE--CTTCHHH
T ss_pred C-----CChHHHHHHHHHhc-----cCCeEEEECCCeEe--CccHHHH
Confidence 2 22445555555554 24899999888873 3444433
No 9
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=66.61 E-value=37 Score=35.00 Aligned_cols=102 Identities=17% Similarity=0.186 Sum_probs=63.9
Q ss_pred CCCceEEEeeccCCChHHHHHHHHHhhcC--CCceEEEeecCCChHHhhHHHHHhhcccceeecccEEEEeecceeeecC
Q 037238 60 PPPRFAYLISGSVGDGNMIKRTLLALYHP--NNVYVVHLDRASSESERLDLQNFVNGFHLFNKFSNVKMITKANLVTYRG 137 (410)
Q Consensus 60 ~~~kiAYLI~~hk~d~~~l~RLL~aLy~p--~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg 137 (410)
..|+++.+|.+++ ..+.+.+.|..+... .+.=+|-+|-.+++...+.++++.+ ..++|.++...+ .|
T Consensus 373 ~~~~vsiii~~yn-~~~~l~~~l~s~~~q~~~~~eiivvdd~S~d~t~~~~~~~~~------~~~~i~~~~~~n----~G 441 (625)
T 2z86_A 373 RVPLVSIYIPAYN-CSKYIVRCVESALNQTITDLEVCICDDGSTDDTLRILQEHYA------NHPRVRFISQKN----KG 441 (625)
T ss_dssp SSCSEEEEEEESS-CTTTHHHHHHHHHSSSCCSEEEEEEEESCSSSHHHHHHHHHT------TCTTEEEEEECC----CC
T ss_pred cCCeEEEEEeCCC-CHHHHHHHHHHHHhCcCCCeEEEEEECcCChhHHHHHHHHHh------hCCcEEEEeCCC----CC
Confidence 4578999999997 678999999988632 2333566776666555454554332 356888885332 33
Q ss_pred chhHHhhHHHHHHHhhcCCCcceEEecCCCCCCccccchhhHHh
Q 037238 138 PTMVANTLHAAAVLLREGGDWDWFINLSASDYPLVTQDDLLDAF 181 (410)
Q Consensus 138 ~S~V~AtL~~~~~lL~~~~~wd~finLSgsDyPLkt~~~i~~~f 181 (410)
...|.-.+++.+ .-||++.|-+.|++ ..+.|...+
T Consensus 442 --~~~a~n~g~~~a-----~g~~i~~ld~D~~~--~~~~l~~~~ 476 (625)
T 2z86_A 442 --IGSASNTAVRLC-----RGFYIGQLDSDDFL--EPDAVELCL 476 (625)
T ss_dssp --HHHHHHHHHHHC-----CSSEEEECCTTCEE--CTTHHHHHH
T ss_pred --HHHHHHHHHHhc-----CCCEEEEECCCccc--ChhHHHHHH
Confidence 333444444443 24899999998875 555554433
No 10
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=60.35 E-value=34 Score=34.38 Aligned_cols=101 Identities=14% Similarity=0.170 Sum_probs=63.4
Q ss_pred CCCCceEEEeeccCCChH-HHHHHHHHhhc--CCC--ceEEEeecCCChHHhhHHHHHhhcccceeecccEEEEeeccee
Q 037238 59 PPPPRFAYLISGSVGDGN-MIKRTLLALYH--PNN--VYVVHLDRASSESERLDLQNFVNGFHLFNKFSNVKMITKANLV 133 (410)
Q Consensus 59 ~~~~kiAYLI~~hk~d~~-~l~RLL~aLy~--p~n--~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V 133 (410)
+..|++..+|.+++ ..+ .|.++|..+.. +.+ .=+|=||-.|++....++ + ...++|+++....
T Consensus 63 ~~~p~vSVIIp~yN-~~~~~L~~~l~Sl~~q~~~~~~~EIIvVDDgS~D~t~~~~---~------~~~~~v~vi~~~~-- 130 (501)
T 2ffu_A 63 VDLPATSVVITFHN-EARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGAL---L------GKIEKVRVLRNDR-- 130 (501)
T ss_dssp SSCCCEEEEEEESS-CCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCSCTHHHHG---G------GGBTTEEEEECSS--
T ss_pred cCCCCEEEEEEeCc-CcHHHHHHHHHHHHhhCchhhceeEEEEECCCCchHHHHH---H------hcCCCEEEEECCC--
Confidence 34678999999997 555 88888888752 223 236777876665442221 1 2467899886322
Q ss_pred eecCchhHHhhHHHHHHHhhcCCCcceEEecCCCCCCccccchhhHHh
Q 037238 134 TYRGPTMVANTLHAAAVLLREGGDWDWFINLSASDYPLVTQDDLLDAF 181 (410)
Q Consensus 134 ~wgg~S~V~AtL~~~~~lL~~~~~wd~finLSgsDyPLkt~~~i~~~f 181 (410)
......|-..+++.+ .-||++.|-+.|.+ +.+.|...+
T Consensus 131 ---n~G~~~A~N~G~~~A-----~gd~i~flD~D~~~--~p~~L~~ll 168 (501)
T 2ffu_A 131 ---REGLMRSRVRGADAA-----QAKVLTFLDSHCEC--NEHWLEPLL 168 (501)
T ss_dssp ---CCHHHHHHHHHHHHC-----CSSEEEECCSSEEE--CTTCHHHHH
T ss_pred ---CcCHHHHHHHHHHhc-----CCCEEEEECCCccc--CccHHHHHH
Confidence 234555666566654 24899999888864 455554444
No 11
>1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A
Probab=45.87 E-value=1.1e+02 Score=26.80 Aligned_cols=90 Identities=17% Similarity=0.239 Sum_probs=50.2
Q ss_pred HHHHHHHHHhhc-C-CCceEEEeecCCChHHhhHHHHHhhcccceeecccEEEEeecceeeecCchhHHhhHHHHHHHhh
Q 037238 76 NMIKRTLLALYH-P-NNVYVVHLDRASSESERLDLQNFVNGFHLFNKFSNVKMITKANLVTYRGPTMVANTLHAAAVLLR 153 (410)
Q Consensus 76 ~~l~RLL~aLy~-p-~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wgg~S~V~AtL~~~~~lL~ 153 (410)
..+.+.++++.. + -..++|-.+. ++ ++.+++ .+ ++.++........++.++..+..++++.+ .
T Consensus 30 pll~~~l~~~~~~~~~~~ivvv~~~----~~---i~~~~~------~~-~~~~~~~~~~~~~~~~g~~~sv~~~l~~~-~ 94 (228)
T 1ezi_A 30 SLLGHTINAAISSKCFDRIIVSTDG----GL---IAEEAK------NF-GVEVVLRPAELASDTASSISGVIHALETI-G 94 (228)
T ss_dssp EHHHHHHHHHHHHCCCSEEEEEESC----HH---HHHHHH------HT-TCEEEECCC------CHHHHHHHHHHHHH-T
T ss_pred CHHHHHHHHHHhCCCCCEEEEECCC----HH---HHHHHH------Hc-CCEEEeCchHHcCCCCChHHHHHHHHHHh-C
Confidence 577888887753 3 2455555542 11 222221 12 34444333334456777777777777766 2
Q ss_pred cCCCcceEEecCCCCCCccccchhhHHhhc
Q 037238 154 EGGDWDWFINLSASDYPLVTQDDLLDAFSY 183 (410)
Q Consensus 154 ~~~~wd~finLSgsDyPLkt~~~i~~~fs~ 183 (410)
.+.|+++.+ ..|.|+.+.+.|...+..
T Consensus 95 --~~~d~vlv~-~~D~P~~~~~~i~~l~~~ 121 (228)
T 1ezi_A 95 --SNSGTVTLL-QPTSPLRTGAHIREAFSL 121 (228)
T ss_dssp --CCSEEEEEC-CTTCTTCCHHHHHHHHTT
T ss_pred --CCCCEEEEE-cCCCCcCCHHHHHHHHHH
Confidence 245777655 569999999999887754
No 12
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=32.02 E-value=1.9e+02 Score=26.96 Aligned_cols=108 Identities=8% Similarity=-0.015 Sum_probs=60.0
Q ss_pred CCCceEEEeeccCCChHHHHHHHHHhhc---CCCceEEEeecCCChHHhhHHHHHhhcccceeecccEEEEeecceeeec
Q 037238 60 PPPRFAYLISGSVGDGNMIKRTLLALYH---PNNVYVVHLDRASSESERLDLQNFVNGFHLFNKFSNVKMITKANLVTYR 136 (410)
Q Consensus 60 ~~~kiAYLI~~hk~d~~~l~RLL~aLy~---p~n~y~IHlD~ka~~~~~~~l~~~v~~~~~~~~~~NV~vv~~~~~V~wg 136 (410)
..|++..+|-+++ ..+.+.++|..|.. |...=+|=||..|++...+.++.+.. ....++.++. .. -.-.
T Consensus 46 ~~~~vSViIp~yN-~~~~l~~~l~sl~~q~~~~~~eiivVDdgS~D~t~~~~~~~~~-----~~~~~~~~~~-~~-~~n~ 117 (329)
T 3ckj_A 46 AGRTISVVLPALD-EEDTIGSVIDSISPLVDGLVDELIVLDSGSTDDTEIRAVAAGA-----RVVSREQALP-EV-PIRP 117 (329)
T ss_dssp TTCCEEEEEEESS-CTTTHHHHHHHHGGGBTTTBSEEEEEECSCCSSHHHHHHHTTC-----EEEEHHHHCT-TS-CCCC
T ss_pred cCCcEEEEEeeCC-CHHHHHHHHHHHHHhhCCCCcEEEEEeCCCCchHHHHHHHhhh-----hhccceeeec-cC-CCCC
Confidence 4588999999997 77889999998864 33334566887776655444433210 0011121110 01 1122
Q ss_pred CchhHHhhHHHHHHHhhcCCCcceEEecCCCCCCc--cccchhhHHhh
Q 037238 137 GPTMVANTLHAAAVLLREGGDWDWFINLSASDYPL--VTQDDLLDAFS 182 (410)
Q Consensus 137 g~S~V~AtL~~~~~lL~~~~~wd~finLSgsDyPL--kt~~~i~~~fs 182 (410)
| ...|.-.+++.+ .-||++.|.+.|..+ -....+...+.
T Consensus 118 G--~~~a~n~g~~~a-----~gd~i~~lD~D~~~~~p~~l~~l~~~l~ 158 (329)
T 3ckj_A 118 G--KGEALWRSLAAS-----RGDIVVFVDSDLINPHPMFVPWLVGPLL 158 (329)
T ss_dssp S--HHHHHHHHHHHC-----CCSEEEECCTTEESCCTTHHHHHHHHHH
T ss_pred C--HHHHHHHHHHhC-----CCCEEEEECCCCCCcChHHHHHHHHHHH
Confidence 3 344444455443 238999999988733 22345555543
No 13
>1qwj_A Cytidine monophospho-N-acetylneuraminic acid synthetase; CMP-5-N-acetylneuraminic acid synthetase, CMP-NEU5AC, sialic acid, glycosylation; HET: NCC; 2.80A {Mus musculus} SCOP: c.68.1.13
Probab=29.49 E-value=2.1e+02 Score=25.14 Aligned_cols=25 Identities=20% Similarity=0.236 Sum_probs=18.9
Q ss_pred CcceEEecCCCCCCccccchhhHHhh
Q 037238 157 DWDWFINLSASDYPLVTQDDLLDAFS 182 (410)
Q Consensus 157 ~wd~finLSgsDyPLkt~~~i~~~fs 182 (410)
+.|+++.+. .|.|+.+.+.|...+.
T Consensus 94 ~~d~vlv~~-~D~Pli~~~~i~~l~~ 118 (229)
T 1qwj_A 94 EVDIVGNIQ-ATSPCLHPTDLQKVAE 118 (229)
T ss_dssp TCSEEEEEC-TTCTTCCHHHHHHHHH
T ss_pred CCCEEEEec-CCCCcCCHHHHHHHHH
Confidence 467877775 5999999888876664
No 14
>3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease, hydrolase, metal- nuclease, RNA-binding, rRNA processing; HET: FLC; 2.05A {Thermus thermophilus} SCOP: d.157.1.10 PDB: 2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A*
Probab=23.49 E-value=29 Score=34.66 Aligned_cols=46 Identities=17% Similarity=0.031 Sum_probs=35.5
Q ss_pred CCCceEEE--eeccCCChHHHHHHHHHhhcCCCceEEEeecCCChHHhhHHH
Q 037238 60 PPPRFAYL--ISGSVGDGNMIKRTLLALYHPNNVYVVHLDRASSESERLDLQ 109 (410)
Q Consensus 60 ~~~kiAYL--I~~hk~d~~~l~RLL~aLy~p~n~y~IHlD~ka~~~~~~~l~ 109 (410)
-.+++.++ .+||. |.+++.+.++.+. +.++||=|.++....++.|+
T Consensus 367 v~a~v~~~~~~saHa-d~~~l~~~~~~~~---~v~lvHge~~~~~~l~~~l~ 414 (431)
T 3iek_A 367 LRASVHTLGGFSGHA-GQDELLDWLQGEP---RVVLVHGEEEKLLALGKLLA 414 (431)
T ss_dssp CCSEEEECGGGCSSC-CHHHHHHHHTTCS---EEEEESSCHHHHHHHHHHHH
T ss_pred EEEEEEEECCccccC-CHHHHHHHHHhCC---eEEEECCCHHHHHHHHHHHH
Confidence 45778887 89997 9999999998763 79999998766555555554
No 15
>1iio_A Conserved hypothetical protein MTH865; 4-helical bundle, monomer, structural genomics, unknown function; NMR {Methanothermobacterthermautotrophicus str} SCOP: a.39.4.1
Probab=23.25 E-value=22 Score=27.83 Aligned_cols=18 Identities=28% Similarity=0.783 Sum_probs=15.4
Q ss_pred cCCCCCCccccchhhHHh
Q 037238 164 LSASDYPLVTQDDLLDAF 181 (410)
Q Consensus 164 LSgsDyPLkt~~~i~~~f 181 (410)
+.|.+|||+|+.||...|
T Consensus 20 ~~~a~FPI~s~~EL~~Al 37 (84)
T 1iio_A 20 LAGADFPINSPEELMAAL 37 (84)
T ss_dssp HTTSSSTTBHHHHHHHHC
T ss_pred HcCCCCCCCCHHHHHHhC
Confidence 446899999999998876
No 16
>1jsd_A Haemagglutinin (HA1 chain); viral protein; HET: NAG; 1.80A {Influenza a virus} SCOP: b.19.1.2 PDB: 1jsh_A* 1jsi_A*
Probab=22.92 E-value=32 Score=33.32 Aligned_cols=43 Identities=19% Similarity=0.442 Sum_probs=33.9
Q ss_pred CCcceEEec----CCCCCC--ccccchhhHHhhcCCCCcccccccCcccc
Q 037238 156 GDWDWFINL----SASDYP--LVTQDDLLDAFSYLPRDLNFIDHTSNIGW 199 (410)
Q Consensus 156 ~~wd~finL----SgsDyP--Lkt~~~i~~~fs~~~~~~NFIe~~~~~~w 199 (410)
..|||+|=- .|.||| +...++|.+.|++. ++.++|+......|
T Consensus 74 ~~WsyiVEr~~~~ng~CYPG~~~d~eeLR~l~ss~-~s~er~~~~p~~~W 122 (319)
T 1jsd_A 74 REWSYIVERPSAVNGMCYPGNVENLEELRSLFSSA-SSYQRIQIFPDTIW 122 (319)
T ss_dssp EECSSEEECTTCCBSCCSSCCBTTHHHHHHHHHHS-SEEEEEESSCGGGC
T ss_pred CceEEEEeCCCCCCCcccCcccCCHHHHHHHHhcc-CccceEEecCCcee
Confidence 679999984 568999 57888999999875 67888887765556
No 17
>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A
Probab=20.97 E-value=35 Score=34.03 Aligned_cols=40 Identities=23% Similarity=0.226 Sum_probs=30.6
Q ss_pred eeccCCChHHHHHHHHHhhcCCCceEEEeecCCChHHhhHHH
Q 037238 68 ISGSVGDGNMIKRTLLALYHPNNVYVVHLDRASSESERLDLQ 109 (410)
Q Consensus 68 I~~hk~d~~~l~RLL~aLy~p~n~y~IHlD~ka~~~~~~~l~ 109 (410)
+++|. |.++|.++++.+. |++.|++|=+..+-....+.|+
T Consensus 393 ~S~Ha-d~~~l~~~i~~~~-p~~v~~vHGe~~~~~~~~~~l~ 432 (459)
T 2i7t_A 393 FSAHT-DYQQTSEFIRALK-PPHVILVHGEQNEMARLKAALI 432 (459)
T ss_dssp CSCCC-CHHHHHHHHHHHC-CSEEEEESSCHHHHHHHHHHHH
T ss_pred ecccC-CHHHHHHHHHhcC-CCeEEEeCCCHHHHHHHHHHHH
Confidence 48887 9999999999997 9999999977654334444443
No 18
>3ku3_A Hemagglutinin HA1 chain; viral envelope protein, viral fusion protein, protein, viral protein; HET: NAG; 1.60A {Influenza a virus} SCOP: b.19.1.2 PDB: 3qqb_A* 3qqe_A* 3qqo_A* 3ku6_A* 3ku5_A* 1jsm_A* 1jsn_A* 1jso_A* 3qqi_A*
Probab=20.29 E-value=39 Score=32.86 Aligned_cols=44 Identities=14% Similarity=0.395 Sum_probs=31.4
Q ss_pred CCCcceEEe----cCCCCCC--ccccchhhHHhhcCCCCcccccccCcccc
Q 037238 155 GGDWDWFIN----LSASDYP--LVTQDDLLDAFSYLPRDLNFIDHTSNIGW 199 (410)
Q Consensus 155 ~~~wd~fin----LSgsDyP--Lkt~~~i~~~fs~~~~~~NFIe~~~~~~w 199 (410)
...|||+|= -.|.||| +...+||.+.|++. ++.++|+..+...|
T Consensus 75 ~~~WsyIVEr~~a~ng~CYPG~~~d~eeLR~l~ss~-~~~erieifp~~~W 124 (327)
T 3ku3_A 75 VPEWSYIMEKENPRDGLCYPGSFNDYEELKHLLSSV-KHFEKVKILPKDRW 124 (327)
T ss_dssp CCCCSCEEECSSCSBSCSSCEEETTHHHHHHHHTTE-EEEEEECCSCGGGC
T ss_pred CceeEEEEEcCCCCCCcccCCccCCHHHHHHHHhcc-CCceeEEecCCCcc
Confidence 368999998 4567999 56777888888754 56777776443344
Done!