Query 037241
Match_columns 306
No_of_seqs 275 out of 1273
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 10:12:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037241.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037241hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00010 HLH: Helix-loop-helix 99.5 1.1E-13 2.4E-18 98.0 6.0 51 96-146 1-55 (55)
2 cd00083 HLH Helix-loop-helix d 99.4 3.5E-13 7.5E-18 96.5 6.5 55 95-149 3-59 (60)
3 smart00353 HLH helix loop heli 99.3 2.4E-12 5.2E-17 90.1 6.6 50 101-150 1-52 (53)
4 KOG1319 bHLHZip transcription 99.1 8.7E-11 1.9E-15 101.1 6.4 73 92-164 58-136 (229)
5 KOG1318 Helix loop helix trans 99.0 5.4E-10 1.2E-14 107.8 6.8 59 93-151 230-291 (411)
6 KOG2483 Upstream transcription 98.7 7.9E-08 1.7E-12 87.0 9.1 69 93-161 56-126 (232)
7 KOG4304 Transcriptional repres 98.5 6.7E-08 1.4E-12 88.7 3.0 60 93-152 29-95 (250)
8 KOG3960 Myogenic helix-loop-he 98.5 6.3E-07 1.4E-11 80.8 8.2 66 94-159 116-182 (284)
9 KOG3561 Aryl-hydrocarbon recep 98.4 3E-07 6.4E-12 95.6 6.2 53 96-148 20-75 (803)
10 KOG2588 Predicted DNA-binding 98.2 5.5E-07 1.2E-11 94.0 2.7 67 94-160 274-340 (953)
11 KOG0561 bHLH transcription fac 98.2 1.3E-06 2.7E-11 80.7 4.1 66 95-160 59-125 (373)
12 cd04895 ACT_ACR_1 ACT domain-c 98.1 2.1E-05 4.5E-10 58.8 7.6 48 239-286 3-50 (72)
13 PLN03217 transcription factor 98.0 1.4E-05 3E-10 60.7 6.3 54 108-161 19-77 (93)
14 KOG4029 Transcription factor H 98.0 4.4E-06 9.5E-11 75.8 4.3 63 93-155 106-171 (228)
15 cd04897 ACT_ACR_3 ACT domain-c 98.0 2.9E-05 6.3E-10 58.5 7.4 51 239-289 3-53 (75)
16 cd04927 ACT_ACR-like_2 Second 97.9 4.5E-05 9.8E-10 57.4 7.7 47 238-284 1-48 (76)
17 cd04900 ACT_UUR-like_1 ACT dom 97.8 0.00012 2.6E-09 54.4 7.8 46 239-284 3-49 (73)
18 cd04896 ACT_ACR-like_3 ACT dom 97.8 9.2E-05 2E-09 55.8 7.1 46 239-284 2-49 (75)
19 cd04925 ACT_ACR_2 ACT domain-c 97.6 0.00037 8E-09 52.0 7.7 46 239-284 2-47 (74)
20 cd04928 ACT_TyrKc Uncharacteri 97.6 0.00058 1.3E-08 50.5 8.1 63 239-305 3-66 (68)
21 KOG3910 Helix loop helix trans 97.4 0.00028 6.1E-09 69.3 5.9 60 92-151 522-584 (632)
22 cd04926 ACT_ACR_4 C-terminal 97.4 0.0011 2.4E-08 49.1 7.8 46 239-284 3-48 (72)
23 cd04899 ACT_ACR-UUR-like_2 C-t 97.3 0.0016 3.5E-08 47.2 7.9 50 239-288 2-51 (70)
24 KOG4447 Transcription factor T 96.9 0.00048 1E-08 58.0 2.2 55 95-149 77-132 (173)
25 PF01842 ACT: ACT domain; Int 96.8 0.0047 1E-07 43.8 6.5 37 239-275 2-38 (66)
26 cd04873 ACT_UUR-ACR-like ACT d 96.7 0.012 2.5E-07 42.2 7.8 48 239-286 2-49 (70)
27 PF13291 ACT_4: ACT domain; PD 96.5 0.02 4.4E-07 42.8 8.2 53 237-289 6-60 (80)
28 PF13740 ACT_6: ACT domain; PD 96.5 0.02 4.4E-07 42.7 8.0 50 237-286 2-51 (76)
29 cd04893 ACT_GcvR_1 ACT domains 96.3 0.023 5E-07 42.5 7.4 49 238-286 2-50 (77)
30 PRK05007 PII uridylyl-transfer 96.1 0.016 3.4E-07 62.6 7.9 51 236-286 807-857 (884)
31 cd04869 ACT_GcvR_2 ACT domains 95.8 0.049 1.1E-06 40.5 7.3 35 240-274 2-36 (81)
32 PRK03381 PII uridylyl-transfer 95.8 0.049 1.1E-06 57.9 9.8 51 237-287 707-757 (774)
33 KOG3898 Transcription factor N 95.7 0.0063 1.4E-07 56.2 2.2 55 95-149 71-127 (254)
34 PRK00275 glnD PII uridylyl-tra 95.6 0.042 9.2E-07 59.3 8.5 51 236-286 813-863 (895)
35 cd04875 ACT_F4HF-DF N-terminal 95.6 0.059 1.3E-06 39.7 6.7 47 240-286 2-48 (74)
36 cd04887 ACT_MalLac-Enz ACT_Mal 95.5 0.091 2E-06 38.3 7.5 51 240-290 2-53 (74)
37 cd04886 ACT_ThrD-II-like C-ter 95.4 0.084 1.8E-06 37.5 7.0 47 240-286 1-52 (73)
38 cd04872 ACT_1ZPV ACT domain pr 95.4 0.041 9E-07 42.0 5.6 49 238-286 2-50 (88)
39 PRK04374 PII uridylyl-transfer 95.3 0.06 1.3E-06 58.0 8.5 60 227-286 784-845 (869)
40 PRK01759 glnD PII uridylyl-tra 95.3 0.045 9.7E-07 58.9 7.6 50 237-286 783-832 (854)
41 PRK00194 hypothetical protein; 95.3 0.047 1E-06 41.8 5.8 50 237-286 3-52 (90)
42 PRK03059 PII uridylyl-transfer 95.2 0.066 1.4E-06 57.6 8.4 48 236-283 785-832 (856)
43 PRK03381 PII uridylyl-transfer 95.1 0.071 1.5E-06 56.7 8.3 50 236-285 598-647 (774)
44 PRK05092 PII uridylyl-transfer 95.1 0.088 1.9E-06 57.2 9.0 51 236-286 842-892 (931)
45 TIGR01693 UTase_glnD [Protein- 94.9 0.092 2E-06 56.5 8.2 52 236-287 667-719 (850)
46 cd04870 ACT_PSP_1 CT domains f 94.8 0.12 2.5E-06 38.3 6.3 47 240-286 2-48 (75)
47 PRK01759 glnD PII uridylyl-tra 94.6 0.13 2.9E-06 55.3 8.6 51 236-286 676-727 (854)
48 COG2844 GlnD UTP:GlnB (protein 94.5 0.12 2.5E-06 54.6 7.7 62 227-288 779-842 (867)
49 KOG4395 Transcription factor A 94.5 0.071 1.5E-06 48.7 5.4 55 96-150 174-230 (285)
50 PRK05007 PII uridylyl-transfer 94.5 0.15 3.2E-06 55.2 8.7 51 236-286 700-751 (884)
51 TIGR01693 UTase_glnD [Protein- 94.4 0.16 3.4E-06 54.7 8.8 52 237-288 779-830 (850)
52 cd04888 ACT_PheB-BS C-terminal 94.3 0.19 4E-06 36.7 6.5 50 239-288 2-52 (76)
53 PRK00275 glnD PII uridylyl-tra 94.1 0.16 3.4E-06 55.0 8.0 52 236-287 703-755 (895)
54 PRK03059 PII uridylyl-transfer 94.1 0.16 3.4E-06 54.8 8.0 50 236-285 677-727 (856)
55 cd04877 ACT_TyrR N-terminal AC 93.8 0.26 5.6E-06 36.3 6.4 47 239-288 2-48 (74)
56 cd04880 ACT_AAAH-PDT-like ACT 93.8 0.44 9.6E-06 34.9 7.6 47 241-287 3-50 (75)
57 cd04876 ACT_RelA-SpoT ACT dom 93.7 0.33 7.2E-06 33.1 6.6 47 240-286 1-48 (71)
58 cd02116 ACT ACT domains are co 93.6 0.39 8.5E-06 31.0 6.5 35 240-274 1-35 (60)
59 PRK04435 hypothetical protein; 93.4 0.4 8.6E-06 40.6 7.7 56 233-288 65-121 (147)
60 PRK04374 PII uridylyl-transfer 93.4 0.25 5.3E-06 53.4 7.8 50 236-285 689-739 (869)
61 cd04894 ACT_ACR-like_1 ACT dom 93.2 0.29 6.4E-06 35.5 5.5 47 239-285 2-48 (69)
62 KOG3558 Hypoxia-inducible fact 93.2 0.079 1.7E-06 54.6 3.6 48 96-144 46-97 (768)
63 PRK05092 PII uridylyl-transfer 93.1 0.35 7.6E-06 52.6 8.5 51 236-286 731-782 (931)
64 cd04881 ACT_HSDH-Hom ACT_HSDH_ 92.9 0.44 9.6E-06 34.2 6.4 49 238-286 1-51 (79)
65 cd04889 ACT_PDH-BS-like C-term 92.8 0.5 1.1E-05 32.5 6.3 45 240-284 1-46 (56)
66 cd04874 ACT_Af1403 N-terminal 92.8 0.63 1.4E-05 32.9 7.0 36 239-274 2-37 (72)
67 PRK08577 hypothetical protein; 92.6 0.77 1.7E-05 38.1 8.2 52 237-288 56-109 (136)
68 cd04905 ACT_CM-PDT C-terminal 92.3 0.93 2E-05 33.7 7.6 49 239-287 3-52 (80)
69 cd04908 ACT_Bt0572_1 N-termina 92.3 0.72 1.6E-05 33.0 6.7 45 239-285 3-47 (66)
70 cd04879 ACT_3PGDH-like ACT_3PG 92.1 0.66 1.4E-05 32.5 6.3 44 240-283 2-47 (71)
71 cd04878 ACT_AHAS N-terminal AC 91.8 1 2.3E-05 31.6 7.1 47 239-285 2-50 (72)
72 PRK06737 acetolactate synthase 91.3 0.97 2.1E-05 34.1 6.6 60 239-304 4-63 (76)
73 PRK11152 ilvM acetolactate syn 91.3 1.5 3.3E-05 33.0 7.6 59 239-304 5-63 (76)
74 cd04903 ACT_LSD C-terminal ACT 91.2 0.99 2.1E-05 31.7 6.4 33 240-272 2-34 (71)
75 cd04882 ACT_Bt0572_2 C-termina 91.1 0.64 1.4E-05 32.5 5.3 34 240-273 2-35 (65)
76 PRK11895 ilvH acetolactate syn 90.9 1.1 2.3E-05 38.7 7.3 60 239-304 4-63 (161)
77 cd04883 ACT_AcuB C-terminal AC 90.8 1.7 3.6E-05 31.2 7.4 47 239-285 3-51 (72)
78 cd04909 ACT_PDH-BS C-terminal 90.7 1.2 2.6E-05 31.8 6.5 35 239-273 3-37 (69)
79 cd04884 ACT_CBS C-terminal ACT 90.5 1.5 3.2E-05 31.9 6.9 34 240-273 2-35 (72)
80 TIGR00119 acolac_sm acetolacta 89.6 1.7 3.6E-05 37.4 7.4 60 239-304 3-62 (157)
81 PRK07334 threonine dehydratase 89.6 1.7 3.6E-05 42.7 8.5 52 238-289 327-383 (403)
82 KOG3559 Transcriptional regula 89.4 0.38 8.2E-06 47.0 3.7 43 102-144 7-52 (598)
83 PRK13562 acetolactate synthase 89.1 1.6 3.4E-05 33.6 6.2 61 239-304 4-64 (84)
84 PRK13011 formyltetrahydrofolat 89.0 2.3 4.9E-05 40.0 8.6 50 237-286 7-56 (286)
85 KOG3582 Mlx interactors and re 88.8 0.095 2.1E-06 54.0 -0.8 69 95-163 650-722 (856)
86 KOG3560 Aryl-hydrocarbon recep 88.7 0.41 8.8E-06 48.3 3.4 39 105-143 34-75 (712)
87 PF13710 ACT_5: ACT domain; PD 88.6 1.9 4.1E-05 31.0 6.1 53 246-304 1-53 (63)
88 cd04931 ACT_PAH ACT domain of 87.0 3.2 6.9E-05 32.2 6.9 50 238-287 15-65 (90)
89 COG2844 GlnD UTP:GlnB (protein 86.8 1.8 3.9E-05 46.0 7.0 55 230-284 677-732 (867)
90 cd04902 ACT_3PGDH-xct C-termin 86.7 1.7 3.7E-05 31.0 5.0 44 241-284 3-48 (73)
91 cd04904 ACT_AAAH ACT domain of 86.2 2.4 5.2E-05 31.3 5.6 48 240-287 3-51 (74)
92 TIGR00655 PurU formyltetrahydr 85.8 2.8 6.1E-05 39.3 7.1 36 239-274 2-37 (280)
93 PRK06027 purU formyltetrahydro 85.3 3.5 7.6E-05 38.7 7.6 39 237-275 6-46 (286)
94 PRK11092 bifunctional (p)ppGpp 83.5 3.9 8.4E-05 43.3 7.7 53 237-289 626-679 (702)
95 TIGR00691 spoT_relA (p)ppGpp s 82.9 4.2 9.2E-05 42.9 7.7 54 237-290 610-664 (683)
96 PRK08178 acetolactate synthase 82.6 8.1 0.00017 30.5 7.3 61 237-304 8-68 (96)
97 cd04901 ACT_3PGDH C-terminal A 81.9 1 2.2E-05 32.0 1.9 46 240-285 2-47 (69)
98 PRK13010 purU formyltetrahydro 81.8 3.4 7.3E-05 39.0 5.9 35 237-271 9-43 (289)
99 PRK10872 relA (p)ppGpp synthet 80.7 6.3 0.00014 42.0 8.0 54 237-290 666-721 (743)
100 cd04929 ACT_TPH ACT domain of 80.3 7.8 0.00017 28.8 6.3 47 242-288 5-52 (74)
101 cd04885 ACT_ThrD-I Tandem C-te 79.5 6.9 0.00015 28.1 5.7 47 240-287 1-48 (68)
102 COG0788 PurU Formyltetrahydrof 78.7 8.6 0.00019 35.9 7.3 52 236-287 6-57 (287)
103 PRK00227 glnD PII uridylyl-tra 78.3 7.2 0.00016 41.2 7.6 68 235-305 544-612 (693)
104 CHL00100 ilvH acetohydroxyacid 77.7 8.1 0.00018 33.7 6.6 48 239-286 4-51 (174)
105 cd04868 ACT_AK-like ACT domain 77.6 9.6 0.00021 25.1 5.8 26 247-272 13-38 (60)
106 PRK11589 gcvR glycine cleavage 76.4 4.7 0.0001 35.6 4.8 48 236-283 7-54 (190)
107 cd04930 ACT_TH ACT domain of t 75.8 9.4 0.0002 30.9 6.1 50 239-288 43-93 (115)
108 cd04919 ACT_AK-Hom3_2 ACT doma 74.8 16 0.00035 25.4 6.5 32 246-277 13-44 (66)
109 KOG4447 Transcription factor T 74.7 2.3 4.9E-05 36.2 2.2 45 103-147 29-74 (173)
110 cd04922 ACT_AKi-HSDH-ThrA_2 AC 74.6 17 0.00037 25.1 6.6 36 239-274 3-41 (66)
111 PRK06382 threonine dehydratase 74.5 11 0.00024 37.1 7.3 49 238-286 331-384 (406)
112 cd04892 ACT_AK-like_2 ACT doma 73.8 15 0.00032 24.7 6.0 34 239-272 2-38 (65)
113 cd04906 ACT_ThrD-I_1 First of 73.1 19 0.00041 27.1 6.8 48 238-287 2-50 (85)
114 COG0317 SpoT Guanosine polypho 73.1 11 0.00024 39.8 7.2 53 237-289 627-680 (701)
115 cd04890 ACT_AK-like_1 ACT doma 72.0 19 0.00041 24.9 6.3 34 246-281 12-45 (62)
116 COG3830 ACT domain-containing 70.5 4 8.7E-05 31.7 2.5 49 238-286 4-52 (90)
117 cd04937 ACT_AKi-DapG-BS_2 ACT 69.8 24 0.00051 24.8 6.4 22 246-267 13-34 (64)
118 TIGR01127 ilvA_1Cterm threonin 69.1 20 0.00043 34.7 7.7 49 238-286 306-359 (380)
119 PRK08198 threonine dehydratase 68.7 24 0.00052 34.5 8.2 50 237-286 327-381 (404)
120 COG4747 ACT domain-containing 67.6 19 0.00041 29.6 5.9 37 239-275 5-41 (142)
121 PRK08526 threonine dehydratase 65.2 26 0.00056 34.5 7.7 51 238-288 327-382 (403)
122 cd04912 ACT_AKiii-LysC-EC-like 64.8 39 0.00084 24.6 6.9 36 245-282 12-47 (75)
123 cd04918 ACT_AK1-AT_2 ACT domai 64.8 19 0.00042 25.5 5.1 36 246-281 12-47 (65)
124 PRK11589 gcvR glycine cleavage 63.9 31 0.00068 30.4 7.2 49 238-286 96-148 (190)
125 cd04916 ACT_AKiii-YclM-BS_2 AC 62.0 43 0.00093 23.0 6.5 27 246-272 13-39 (66)
126 PF02120 Flg_hook: Flagellar h 61.3 32 0.00069 25.5 6.0 48 226-273 26-79 (85)
127 cd04921 ACT_AKi-HSDH-ThrA-like 60.4 39 0.00084 24.5 6.2 28 245-272 12-39 (80)
128 COG4492 PheB ACT domain-contai 60.0 32 0.0007 28.8 6.0 52 236-287 71-123 (150)
129 cd04932 ACT_AKiii-LysC-EC_1 AC 59.8 46 0.001 24.5 6.5 32 239-270 3-37 (75)
130 cd04933 ACT_AK1-AT_1 ACT domai 59.3 55 0.0012 24.5 6.9 32 239-270 3-37 (78)
131 cd04934 ACT_AK-Hom3_1 CT domai 58.0 57 0.0012 23.9 6.7 32 239-270 3-37 (73)
132 PF13840 ACT_7: ACT domain ; P 57.5 12 0.00027 26.7 3.0 32 238-269 7-42 (65)
133 PRK03094 hypothetical protein; 57.4 28 0.00061 26.5 4.9 20 250-269 9-28 (80)
134 PRK11899 prephenate dehydratas 57.4 54 0.0012 30.7 8.0 51 238-288 195-246 (279)
135 PF05088 Bac_GDH: Bacterial NA 56.3 50 0.0011 38.2 8.7 53 236-288 488-545 (1528)
136 cd04924 ACT_AK-Arch_2 ACT doma 55.3 64 0.0014 22.0 6.5 27 246-272 13-39 (66)
137 cd04935 ACT_AKiii-DAPDC_1 ACT 55.1 67 0.0015 23.6 6.7 26 245-270 12-37 (75)
138 cd04915 ACT_AK-Ectoine_2 ACT d 54.5 30 0.00066 24.7 4.6 35 247-281 14-48 (66)
139 COG0440 IlvH Acetolactate synt 50.3 45 0.00098 28.8 5.7 61 239-305 6-66 (163)
140 cd04891 ACT_AK-LysC-DapG-like_ 50.1 71 0.0015 21.0 5.9 27 245-271 9-35 (61)
141 PF06005 DUF904: Protein of un 49.2 37 0.0008 25.2 4.4 27 134-160 12-38 (72)
142 COG3074 Uncharacterized protei 48.7 33 0.00072 25.4 3.9 28 134-161 12-39 (79)
143 cd04913 ACT_AKii-LysC-BS-like_ 48.4 89 0.0019 21.6 6.6 27 244-270 9-35 (75)
144 KOG3582 Mlx interactors and re 48.2 5 0.00011 41.9 -0.5 61 95-158 786-850 (856)
145 COG1259 Uncharacterized conser 47.2 73 0.0016 27.2 6.4 48 245-292 55-103 (151)
146 cd04936 ACT_AKii-LysC-BS-like_ 47.0 86 0.0019 21.0 6.0 25 246-270 12-36 (63)
147 TIGR00656 asp_kin_monofn aspar 46.3 77 0.0017 30.8 7.5 41 231-271 254-297 (401)
148 PF02577 DNase-RNase: Bifuncti 45.5 85 0.0019 25.8 6.6 57 247-305 51-108 (135)
149 PRK06291 aspartate kinase; Pro 44.6 90 0.002 31.2 7.8 50 232-281 316-368 (465)
150 PF02344 Myc-LZ: Myc leucine z 44.5 26 0.00057 21.8 2.4 18 103-120 12-29 (32)
151 COG2061 ACT-domain-containing 43.9 84 0.0018 27.0 6.2 49 238-286 6-57 (170)
152 PRK15422 septal ring assembly 43.8 45 0.00097 25.3 4.1 29 134-162 12-40 (79)
153 PRK15385 magnesium transport p 42.3 1.4E+02 0.003 27.3 7.8 38 237-274 142-181 (225)
154 cd04923 ACT_AK-LysC-DapG-like_ 42.1 1E+02 0.0023 20.6 6.4 25 246-270 12-36 (63)
155 smart00338 BRLZ basic region l 41.9 38 0.00082 24.1 3.4 23 140-162 26-48 (65)
156 COG1707 ACT domain-containing 40.5 78 0.0017 27.7 5.6 50 239-288 4-53 (218)
157 PRK11898 prephenate dehydratas 40.2 91 0.002 29.2 6.6 51 238-288 197-249 (283)
158 PRK08210 aspartate kinase I; R 39.4 1.1E+02 0.0023 30.0 7.2 40 232-271 266-306 (403)
159 COG0077 PheA Prephenate dehydr 39.1 1.2E+02 0.0026 28.5 7.1 54 237-290 194-248 (279)
160 PF00170 bZIP_1: bZIP transcri 39.0 47 0.001 23.6 3.5 21 140-160 26-46 (64)
161 PLN02705 beta-amylase 38.1 1.1E+02 0.0025 31.9 7.2 29 93-121 81-109 (681)
162 COG3978 Acetolactate synthase 38.0 1.2E+02 0.0027 23.1 5.6 38 238-275 4-41 (86)
163 TIGR01270 Trp_5_monoox tryptop 36.6 87 0.0019 31.6 6.1 51 238-288 32-84 (464)
164 TIGR01268 Phe4hydrox_tetr phen 36.5 98 0.0021 31.0 6.4 50 238-287 17-67 (436)
165 PHA01753 Holliday junction res 35.6 96 0.0021 25.5 5.2 39 253-291 13-62 (121)
166 PRK10622 pheA bifunctional cho 35.5 1.5E+02 0.0033 29.1 7.6 51 238-288 298-349 (386)
167 PRK08818 prephenate dehydrogen 35.3 1.3E+02 0.0028 29.4 7.0 48 239-287 297-345 (370)
168 PLN02317 arogenate dehydratase 35.1 1.7E+02 0.0037 28.8 7.7 39 238-276 284-322 (382)
169 PF13224 DUF4032: Domain of un 34.4 72 0.0016 27.6 4.5 40 251-290 21-60 (165)
170 TIGR02079 THD1 threonine dehyd 33.5 1.7E+02 0.0036 28.8 7.6 50 238-287 326-377 (409)
171 PF08826 DMPK_coil: DMPK coile 33.4 99 0.0022 22.2 4.4 29 132-160 31-59 (61)
172 PRK06291 aspartate kinase; Pro 32.5 1.8E+02 0.004 29.1 7.8 51 231-281 392-445 (465)
173 PRK09034 aspartate kinase; Rev 32.1 1.7E+02 0.0036 29.3 7.4 44 231-274 379-425 (454)
174 cd04910 ACT_AK-Ectoine_1 ACT d 31.1 2.2E+02 0.0047 21.0 6.3 37 247-285 14-50 (71)
175 TIGR00657 asp_kinases aspartat 30.9 2.3E+02 0.0051 27.9 8.2 41 232-272 297-339 (441)
176 PF09849 DUF2076: Uncharacteri 30.8 1.7E+02 0.0037 27.0 6.6 49 108-158 6-73 (247)
177 PF14992 TMCO5: TMCO5 family 30.3 84 0.0018 29.6 4.5 27 133-159 144-170 (280)
178 PLN02551 aspartokinase 30.2 1.6E+02 0.0036 30.1 7.1 37 234-270 363-402 (521)
179 PF09006 Surfac_D-trimer: Lung 30.1 80 0.0017 21.5 3.2 20 142-161 1-20 (46)
180 COG4747 ACT domain-containing 29.8 1.6E+02 0.0035 24.3 5.5 44 239-283 71-116 (142)
181 PRK09084 aspartate kinase III; 29.5 2.2E+02 0.0049 28.3 7.8 39 232-270 301-342 (448)
182 PRK06635 aspartate kinase; Rev 29.3 2.3E+02 0.0049 27.5 7.7 42 233-274 258-300 (404)
183 PF14197 Cep57_CLD_2: Centroso 29.3 1.1E+02 0.0023 22.5 4.1 28 132-159 39-66 (69)
184 PHA03386 P10 fibrous body prot 28.4 1.2E+02 0.0026 23.7 4.4 33 129-161 1-33 (94)
185 PRK08210 aspartate kinase I; R 27.1 2.3E+02 0.005 27.6 7.3 37 231-267 333-372 (403)
186 PRK06635 aspartate kinase; Rev 26.8 2.5E+02 0.0055 27.2 7.6 39 231-269 334-375 (404)
187 PF01166 TSC22: TSC-22/dip/bun 26.8 1.1E+02 0.0023 21.9 3.5 28 132-162 16-43 (59)
188 PHA02414 hypothetical protein 26.6 1E+02 0.0023 24.3 3.8 46 108-154 31-78 (111)
189 PF05687 DUF822: Plant protein 26.3 1.6E+02 0.0035 25.0 5.1 28 95-122 10-37 (150)
190 TIGR00656 asp_kin_monofn aspar 26.2 3.1E+02 0.0068 26.5 8.1 47 233-281 333-382 (401)
191 cd04898 ACT_ACR-like_4 ACT dom 26.0 84 0.0018 23.7 3.0 49 241-289 4-54 (77)
192 PRK09466 metL bifunctional asp 25.6 2.2E+02 0.0047 30.9 7.3 49 234-282 314-365 (810)
193 PLN02551 aspartokinase 25.1 2.9E+02 0.0062 28.3 7.8 51 231-281 439-491 (521)
194 TIGR00719 sda_beta L-serine de 25.0 4.8E+02 0.01 23.0 8.6 52 230-281 141-194 (208)
195 PRK07431 aspartate kinase; Pro 24.7 2.7E+02 0.0059 28.7 7.6 40 230-269 341-383 (587)
196 COG2716 GcvR Glycine cleavage 24.6 99 0.0021 27.0 3.7 36 237-272 92-127 (176)
197 PRK09436 thrA bifunctional asp 24.5 2.5E+02 0.0055 30.4 7.6 41 232-272 310-353 (819)
198 KOG4005 Transcription factor X 24.1 5.2E+02 0.011 23.9 8.3 59 95-161 58-118 (292)
199 PF14689 SPOB_a: Sensor_kinase 24.0 2.6E+02 0.0055 19.8 5.2 40 105-152 17-56 (62)
200 PRK12483 threonine dehydratase 23.4 3E+02 0.0066 28.2 7.6 49 237-287 345-394 (521)
201 PF06305 DUF1049: Protein of u 23.4 76 0.0017 22.4 2.4 17 142-158 50-66 (68)
202 COG1591 Holliday junction reso 23.2 2.1E+02 0.0046 24.0 5.2 50 251-303 10-70 (137)
203 PRK08639 threonine dehydratase 23.1 3.1E+02 0.0068 27.0 7.4 35 237-271 336-370 (420)
204 PF10393 Matrilin_ccoil: Trime 23.1 1.9E+02 0.0042 19.7 4.1 29 132-160 15-43 (47)
205 PRK09181 aspartate kinase; Val 23.0 2.7E+02 0.0058 28.2 7.0 36 234-269 326-364 (475)
206 TIGR02159 PA_CoA_Oxy4 phenylac 22.9 1.7E+02 0.0038 24.6 4.8 43 230-272 19-66 (146)
207 cd04920 ACT_AKiii-DAPDC_2 ACT 22.7 2.7E+02 0.0059 19.3 6.4 25 246-270 12-36 (63)
208 PRK09224 threonine dehydratase 22.5 3.4E+02 0.0073 27.6 7.7 49 237-287 328-377 (504)
209 PF13591 MerR_2: MerR HTH fami 22.4 1.4E+02 0.003 22.4 3.8 24 137-160 60-83 (84)
210 PRK09436 thrA bifunctional asp 21.9 3.4E+02 0.0073 29.4 7.9 51 231-281 390-443 (819)
211 PF07716 bZIP_2: Basic region 21.9 1.4E+02 0.0031 20.4 3.4 20 140-159 25-44 (54)
212 PRK11790 D-3-phosphoglycerate 21.5 1.2E+02 0.0026 29.9 4.1 46 236-281 337-382 (409)
213 PF12344 UvrB: Ultra-violet re 21.4 1.4E+02 0.0031 20.1 3.2 30 96-125 8-37 (44)
214 PF02185 HR1: Hr1 repeat; Int 21.4 3.2E+02 0.0069 19.6 6.9 46 111-161 16-61 (70)
215 PF07334 IFP_35_N: Interferon- 21.2 1.6E+02 0.0034 22.2 3.7 27 135-161 2-28 (76)
216 COG0556 UvrB Helicase subunit 21.2 2.5E+02 0.0053 29.3 6.2 64 95-159 558-636 (663)
217 TIGR01124 ilvA_2Cterm threonin 21.1 3.4E+02 0.0073 27.6 7.3 34 236-271 324-357 (499)
218 TIGR00657 asp_kinases aspartat 21.0 3.7E+02 0.0081 26.5 7.6 39 231-269 372-413 (441)
219 PRK00227 glnD PII uridylyl-tra 20.7 77 0.0017 33.7 2.7 43 238-284 632-674 (693)
220 PRK08150 enoyl-CoA hydratase; 20.3 3E+02 0.0065 25.0 6.3 52 228-280 3-59 (255)
221 PF04508 Pox_A_type_inc: Viral 20.2 1.6E+02 0.0035 17.0 2.8 17 142-158 3-19 (23)
222 PF03698 UPF0180: Uncharacteri 20.2 2.1E+02 0.0045 21.7 4.3 21 250-270 9-29 (80)
223 PRK10820 DNA-binding transcrip 20.2 1.5E+02 0.0032 30.2 4.6 35 239-273 2-36 (520)
No 1
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.46 E-value=1.1e-13 Score=97.96 Aligned_cols=51 Identities=39% Similarity=0.625 Sum_probs=47.9
Q ss_pred hhhhccHHHHHHHHHHHHHHHHHHhcCCCC----CCCCChhhHHHHHHHHHHHHH
Q 037241 96 EHEIHIWTERERRKKMRNMFANLHSLLPQL----PPKADKSSIVDEAVSYIKTLQ 146 (306)
Q Consensus 96 ~~~~h~~~Er~RR~~~~~~~~~Lr~lvP~~----~~k~~k~~iL~~ai~YIk~Lq 146 (306)
+|..|+..||+||.+||++|..|+.+||.. ..|.+|++||..||+||++||
T Consensus 1 rR~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 1 RRQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 468999999999999999999999999987 378999999999999999997
No 2
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.42 E-value=3.5e-13 Score=96.51 Aligned_cols=55 Identities=47% Similarity=0.747 Sum_probs=51.6
Q ss_pred chhhhccHHHHHHHHHHHHHHHHHHhcCCCCC--CCCChhhHHHHHHHHHHHHHHHH
Q 037241 95 SEHEIHIWTERERRKKMRNMFANLHSLLPQLP--PKADKSSIVDEAVSYIKTLQQTL 149 (306)
Q Consensus 95 ~~~~~h~~~Er~RR~~~~~~~~~Lr~lvP~~~--~k~~k~~iL~~ai~YIk~Lq~~~ 149 (306)
..+..|+..||+||.+||.+|..|+++||... .|++|++||..||+||++|+.++
T Consensus 3 ~~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~ 59 (60)
T cd00083 3 SRREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL 59 (60)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 36789999999999999999999999999984 89999999999999999999876
No 3
>smart00353 HLH helix loop helix domain.
Probab=99.35 E-value=2.4e-12 Score=90.10 Aligned_cols=50 Identities=44% Similarity=0.658 Sum_probs=46.0
Q ss_pred cHHHHHHHHHHHHHHHHHHhcCCCC--CCCCChhhHHHHHHHHHHHHHHHHH
Q 037241 101 IWTERERRKKMRNMFANLHSLLPQL--PPKADKSSIVDEAVSYIKTLQQTLR 150 (306)
Q Consensus 101 ~~~Er~RR~~~~~~~~~Lr~lvP~~--~~k~~k~~iL~~ai~YIk~Lq~~~~ 150 (306)
+..||+||.+||++|..|+++||.. ..|.+|++||..||+||++|+.+++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 4689999999999999999999974 3789999999999999999999876
No 4
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=99.13 E-value=8.7e-11 Score=101.06 Aligned_cols=73 Identities=21% Similarity=0.387 Sum_probs=64.8
Q ss_pred CCcchhhhccHHHHHHHHHHHHHHHHHHhcCCCCC------CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 037241 92 EGESEHEIHIWTERERRKKMRNMFANLHSLLPQLP------PKADKSSIVDEAVSYIKTLQQTLRKLQKQKLERLQGVA 164 (306)
Q Consensus 92 ~~~~~~~~h~~~Er~RR~~~~~~~~~Lr~lvP~~~------~k~~k~~iL~~ai~YIk~Lq~~~~~L~~~~~~~~~~~~ 164 (306)
..+.+|..|..+||+||+.||..+..|+.|||.+. .|++|+-||.++|+||.+|.++...-+.+...|.+.++
T Consensus 58 yk~rrr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L~k~vt 136 (229)
T KOG1319|consen 58 YKDRRRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTLRKDVT 136 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567899999999999999999999999999874 38899999999999999999999998888888766554
No 5
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=99.00 E-value=5.4e-10 Score=107.81 Aligned_cols=59 Identities=31% Similarity=0.530 Sum_probs=53.6
Q ss_pred CcchhhhccHHHHHHHHHHHHHHHHHHhcCCCCC---CCCChhhHHHHHHHHHHHHHHHHHH
Q 037241 93 GESEHEIHIWTERERRKKMRNMFANLHSLLPQLP---PKADKSSIVDEAVSYIKTLQQTLRK 151 (306)
Q Consensus 93 ~~~~~~~h~~~Er~RR~~~~~~~~~Lr~lvP~~~---~k~~k~~iL~~ai~YIk~Lq~~~~~ 151 (306)
.+.+|..||++||+||++||++|.+|..|||.+. .|..|..||..+++||+.||+..++
T Consensus 230 dr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~ 291 (411)
T KOG1318|consen 230 DRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQR 291 (411)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHH
Confidence 3457899999999999999999999999999984 5788999999999999999988773
No 6
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=98.69 E-value=7.9e-08 Score=86.95 Aligned_cols=69 Identities=23% Similarity=0.337 Sum_probs=58.7
Q ss_pred CcchhhhccHHHHHHHHHHHHHHHHHHhcCCCCCCCC-C-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 037241 93 GESEHEIHIWTERERRKKMRNMFANLHSLLPQLPPKA-D-KSSIVDEAVSYIKTLQQTLRKLQKQKLERLQ 161 (306)
Q Consensus 93 ~~~~~~~h~~~Er~RR~~~~~~~~~Lr~lvP~~~~k~-~-k~~iL~~ai~YIk~Lq~~~~~L~~~~~~~~~ 161 (306)
....|..||..||+||..|+++|..|+.+||.++... . .++||+.|..||+.|+.+.....+.+++|.+
T Consensus 56 ~~~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~~e~l~~ 126 (232)
T KOG2483|consen 56 AASSRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQDIEDLSR 126 (232)
T ss_pred CCcchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3457899999999999999999999999999986333 2 5899999999999999988877777766543
No 7
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=98.49 E-value=6.7e-08 Score=88.66 Aligned_cols=60 Identities=20% Similarity=0.362 Sum_probs=52.3
Q ss_pred CcchhhhccHHHHHHHHHHHHHHHHHHhcCCCCC-------CCCChhhHHHHHHHHHHHHHHHHHHH
Q 037241 93 GESEHEIHIWTERERRKKMRNMFANLHSLLPQLP-------PKADKSSIVDEAVSYIKTLQQTLRKL 152 (306)
Q Consensus 93 ~~~~~~~h~~~Er~RR~~~~~~~~~Lr~lvP~~~-------~k~~k~~iL~~ai~YIk~Lq~~~~~L 152 (306)
...++..|-++||+||.+||+++.+|++|||... .|++|+.||+.|++|++.|+.....-
T Consensus 29 ~~~rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~~ 95 (250)
T KOG4304|consen 29 RQYRKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQAA 95 (250)
T ss_pred HHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcccccc
Confidence 3457789999999999999999999999999652 57899999999999999999765543
No 8
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=98.46 E-value=6.3e-07 Score=80.76 Aligned_cols=66 Identities=23% Similarity=0.299 Sum_probs=58.7
Q ss_pred cchhhhccHHHHHHHHHHHHHHHHH-HhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037241 94 ESEHEIHIWTERERRKKMRNMFANL-HSLLPQLPPKADKSSIVDEAVSYIKTLQQTLRKLQKQKLER 159 (306)
Q Consensus 94 ~~~~~~h~~~Er~RR~~~~~~~~~L-r~lvP~~~~k~~k~~iL~~ai~YIk~Lq~~~~~L~~~~~~~ 159 (306)
-.+|.+-.+.||+|=+|+|+.|.+| |..+++.+.++.|+.||..||+||..||.-++++.+....+
T Consensus 116 vDRRKAATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~~~~ 182 (284)
T KOG3960|consen 116 VDRRKAATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAEKGL 182 (284)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhccchhh
Confidence 4577888999999999999999999 66677777999999999999999999999999988776655
No 9
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=98.43 E-value=3e-07 Score=95.65 Aligned_cols=53 Identities=23% Similarity=0.391 Sum_probs=50.2
Q ss_pred hhhhccHHHHHHHHHHHHHHHHHHhcCCCCC---CCCChhhHHHHHHHHHHHHHHH
Q 037241 96 EHEIHIWTERERRKKMRNMFANLHSLLPQLP---PKADKSSIVDEAVSYIKTLQQT 148 (306)
Q Consensus 96 ~~~~h~~~Er~RR~~~~~~~~~Lr~lvP~~~---~k~~k~~iL~~ai~YIk~Lq~~ 148 (306)
.|+.|+.+||+||++||..|.+|.+|||.+. .|+||.+||.+||.+|+.++..
T Consensus 20 ~Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 20 KRENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 4789999999999999999999999999986 8999999999999999999885
No 10
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=98.23 E-value=5.5e-07 Score=94.02 Aligned_cols=67 Identities=24% Similarity=0.365 Sum_probs=63.2
Q ss_pred cchhhhccHHHHHHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037241 94 ESEHEIHIWTERERRKKMRNMFANLHSLLPQLPPKADKSSIVDEAVSYIKTLQQTLRKLQKQKLERL 160 (306)
Q Consensus 94 ~~~~~~h~~~Er~RR~~~~~~~~~Lr~lvP~~~~k~~k~~iL~~ai~YIk~Lq~~~~~L~~~~~~~~ 160 (306)
..+|.+||.+|++.|..||+++.+|+.+||....|..|..+|..||+||++|+...+.|..+...+.
T Consensus 274 ~~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~~l~ 340 (953)
T KOG2588|consen 274 GEKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLENASLR 340 (953)
T ss_pred CcccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhhhhhh
Confidence 4689999999999999999999999999999889999999999999999999999999998887765
No 11
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=98.20 E-value=1.3e-06 Score=80.72 Aligned_cols=66 Identities=29% Similarity=0.374 Sum_probs=57.0
Q ss_pred chhhhccHHHHHHHHHHHHHHHHHHhcCCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037241 95 SEHEIHIWTERERRKKMRNMFANLHSLLPQLP-PKADKSSIVDEAVSYIKTLQQTLRKLQKQKLERL 160 (306)
Q Consensus 95 ~~~~~h~~~Er~RR~~~~~~~~~Lr~lvP~~~-~k~~k~~iL~~ai~YIk~Lq~~~~~L~~~~~~~~ 160 (306)
-+|+.-|..||+|-.-||..|..||+|||.-. .|.+|+.||+.+.+||.+|+...-+|-.+..++.
T Consensus 59 mRReIANsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt~ll~qn~elK 125 (373)
T KOG0561|consen 59 MRREIANSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKTELLPQNGELK 125 (373)
T ss_pred HHHHhhcchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhcccccccccchHH
Confidence 46788899999999999999999999999764 7999999999999999999988777665544443
No 12
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.06 E-value=2.1e-05 Score=58.78 Aligned_cols=48 Identities=25% Similarity=0.288 Sum_probs=45.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEEEEEEEc
Q 037241 239 HISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYMIQVHVN 286 (306)
Q Consensus 239 ~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~i~akv~ 286 (306)
.|+|.++.|||+|.+|.++|.++||+|..|.|++.++++..+|.+.-.
T Consensus 3 viev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~ 50 (72)
T cd04895 3 LVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQ 50 (72)
T ss_pred EEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECC
Confidence 589999999999999999999999999999999999999999988743
No 13
>PLN03217 transcription factor ATBS1; Provisional
Probab=98.04 E-value=1.4e-05 Score=60.66 Aligned_cols=54 Identities=22% Similarity=0.508 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHhcCCCCC-----CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 037241 108 RKKMRNMFANLHSLLPQLP-----PKADKSSIVDEAVSYIKTLQQTLRKLQKQKLERLQ 161 (306)
Q Consensus 108 R~~~~~~~~~Lr~lvP~~~-----~k~~k~~iL~~ai~YIk~Lq~~~~~L~~~~~~~~~ 161 (306)
-++|++.+..|+.|||... .|.+-+-||++++.||+.|+++|+.|.+.+.+|+.
T Consensus 19 ddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~LL~ 77 (93)
T PLN03217 19 EDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSELLA 77 (93)
T ss_pred HHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3689999999999999863 45667789999999999999999999999999864
No 14
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=98.04 E-value=4.4e-06 Score=75.84 Aligned_cols=63 Identities=29% Similarity=0.409 Sum_probs=55.4
Q ss_pred CcchhhhccHHHHHHHHHHHHHHHHHHhcCCCCC---CCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 037241 93 GESEHEIHIWTERERRKKMRNMFANLHSLLPQLP---PKADKSSIVDEAVSYIKTLQQTLRKLQKQ 155 (306)
Q Consensus 93 ~~~~~~~h~~~Er~RR~~~~~~~~~Lr~lvP~~~---~k~~k~~iL~~ai~YIk~Lq~~~~~L~~~ 155 (306)
....+..+|.+||+|=..+|..|..||.+||..+ +|.+|..+|..||.||++|++-++.-+..
T Consensus 106 ~~~~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~ 171 (228)
T KOG4029|consen 106 TSAQRQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAP 171 (228)
T ss_pred hhhhhhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccC
Confidence 4457788899999999999999999999999864 68999999999999999999887765544
No 15
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.00 E-value=2.9e-05 Score=58.48 Aligned_cols=51 Identities=10% Similarity=0.161 Sum_probs=46.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEEEEEEEcCcc
Q 037241 239 HISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYMIQVHVNGAS 289 (306)
Q Consensus 239 ~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~i~akv~~~~ 289 (306)
.|+|.|+.|||||.+|..+|-+++|+|.+|.|++.++++..+|++.-..+.
T Consensus 3 vveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~ 53 (75)
T cd04897 3 VVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGR 53 (75)
T ss_pred EEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCC
Confidence 589999999999999999999999999999999999999999988655443
No 16
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.95 E-value=4.5e-05 Score=57.37 Aligned_cols=47 Identities=13% Similarity=0.233 Sum_probs=43.6
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEe-eCCeEEEEEEEE
Q 037241 238 AHISICSPKKPGMFSTICYVLEKHKIEVISAQVSS-DLTRRMYMIQVH 284 (306)
Q Consensus 238 ~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~-~~~~v~~~i~ak 284 (306)
+.|+|+|+.|+|+|.+|..+|..+||+|+.|.|.+ .++.++.+|++.
T Consensus 1 ~~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~ 48 (76)
T cd04927 1 FLLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFIT 48 (76)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEe
Confidence 46899999999999999999999999999999996 888999999875
No 17
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.80 E-value=0.00012 Score=54.36 Aligned_cols=46 Identities=20% Similarity=0.406 Sum_probs=42.3
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEee-CCeEEEEEEEE
Q 037241 239 HISICSPKKPGMFSTICYVLEKHKIEVISAQVSSD-LTRRMYMIQVH 284 (306)
Q Consensus 239 ~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~-~~~v~~~i~ak 284 (306)
.|.|+|+.++|+|.+|..+|..++|+|+.|.+.+. +++++.+|++.
T Consensus 3 ~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~ 49 (73)
T cd04900 3 EVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVL 49 (73)
T ss_pred EEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEE
Confidence 58899999999999999999999999999999877 68899988876
No 18
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.80 E-value=9.2e-05 Score=55.76 Aligned_cols=46 Identities=15% Similarity=0.182 Sum_probs=43.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEE--eeCCeEEEEEEEE
Q 037241 239 HISICSPKKPGMFSTICYVLEKHKIEVISAQVS--SDLTRRMYMIQVH 284 (306)
Q Consensus 239 ~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is--~~~~~v~~~i~ak 284 (306)
.|+|.|+.|||||.+|.++|..++|+|..|.|+ +.++++..+|.+.
T Consensus 2 vlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv~ 49 (75)
T cd04896 2 LLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQ 49 (75)
T ss_pred EEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEEe
Confidence 588999999999999999999999999999999 9999999999883
No 19
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.60 E-value=0.00037 Score=52.00 Aligned_cols=46 Identities=24% Similarity=0.374 Sum_probs=43.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEEEEEE
Q 037241 239 HISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYMIQVH 284 (306)
Q Consensus 239 ~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~i~ak 284 (306)
.|+|.++.+||+|.+|..+|..+|++|+.|.+.+.++.++.+|++.
T Consensus 2 ~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~ 47 (74)
T cd04925 2 AIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVR 47 (74)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEE
Confidence 5889999999999999999999999999999999999999988775
No 20
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.56 E-value=0.00058 Score=50.45 Aligned_cols=63 Identities=14% Similarity=0.176 Sum_probs=49.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEee-CCeEEEEEEEEEcCccccccCCCChHHHHHhh
Q 037241 239 HISICSPKKPGMFSTICYVLEKHKIEVISAQVSSD-LTRRMYMIQVHVNGASDQFSEALPVEEMYKQA 305 (306)
Q Consensus 239 ~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~-~~~v~~~i~akv~~~~~~~~~~~~~ee~~k~a 305 (306)
.|-|.|+.+||+|++|..+|..++|+|+.|++.+. ++.++.+|.+.-.... +....++.++.|
T Consensus 3 eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~----~~~~~~~~~~~~ 66 (68)
T cd04928 3 EITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRG----ETAALGHALQKE 66 (68)
T ss_pred EEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCcc----chHHHHHHHHHh
Confidence 57889999999999999999999999999999864 6778888877644332 235566666655
No 21
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=97.39 E-value=0.00028 Score=69.33 Aligned_cols=60 Identities=23% Similarity=0.277 Sum_probs=49.8
Q ss_pred CCcchhhhccHHHHHHHHHHHHHHHHHHhcCCCC---CCCCChhhHHHHHHHHHHHHHHHHHH
Q 037241 92 EGESEHEIHIWTERERRKKMRNMFANLHSLLPQL---PPKADKSSIVDEAVSYIKTLQQTLRK 151 (306)
Q Consensus 92 ~~~~~~~~h~~~Er~RR~~~~~~~~~Lr~lvP~~---~~k~~k~~iL~~ai~YIk~Lq~~~~~ 151 (306)
+...+|+.+|++||-|-..||+.|.+|..+.-.- .+.-.|.-||..|+..|-.|+++|.+
T Consensus 522 REkERR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRE 584 (632)
T KOG3910|consen 522 REKERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRE 584 (632)
T ss_pred HHHHHHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHH
Confidence 3456889999999999999999999998876432 12345789999999999999999976
No 22
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.37 E-value=0.0011 Score=49.07 Aligned_cols=46 Identities=15% Similarity=0.311 Sum_probs=40.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEEEEEE
Q 037241 239 HISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYMIQVH 284 (306)
Q Consensus 239 ~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~i~ak 284 (306)
.|.|.++.++|+|.+|..+|.+++++|+++.+.+.++.++.+|++.
T Consensus 3 ri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~ 48 (72)
T cd04926 3 RLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVT 48 (72)
T ss_pred EEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEE
Confidence 5778899999999999999999999999999998877777777665
No 23
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.30 E-value=0.0016 Score=47.17 Aligned_cols=50 Identities=16% Similarity=0.271 Sum_probs=44.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEEEEEEEcCc
Q 037241 239 HISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYMIQVHVNGA 288 (306)
Q Consensus 239 ~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~i~akv~~~ 288 (306)
.|.|.++.++|+|.+|+.+|.+++++|+++.+.+.++.++.+|++.-...
T Consensus 2 ~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~ 51 (70)
T cd04899 2 VLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADG 51 (70)
T ss_pred EEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCC
Confidence 57889999999999999999999999999999998888888888875443
No 24
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=96.94 E-value=0.00048 Score=57.98 Aligned_cols=55 Identities=31% Similarity=0.475 Sum_probs=50.1
Q ss_pred chhhhccHHHHHHHHHHHHHHHHHHhcCCCCC-CCCChhhHHHHHHHHHHHHHHHH
Q 037241 95 SEHEIHIWTERERRKKMRNMFANLHSLLPQLP-PKADKSSIVDEAVSYIKTLQQTL 149 (306)
Q Consensus 95 ~~~~~h~~~Er~RR~~~~~~~~~Lr~lvP~~~-~k~~k~~iL~~ai~YIk~Lq~~~ 149 (306)
.++..|++.||+|-..+|+.|..||.++|.++ .|.+|.-.|.-|..||-+|-+-+
T Consensus 77 ~qrv~anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~vl 132 (173)
T KOG4447|consen 77 KQRVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVL 132 (173)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhhcc
Confidence 46789999999999999999999999999986 78999999999999999986543
No 25
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=96.84 E-value=0.0047 Score=43.78 Aligned_cols=37 Identities=27% Similarity=0.530 Sum_probs=34.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCC
Q 037241 239 HISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLT 275 (306)
Q Consensus 239 ~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~ 275 (306)
.|.|.|+.+||+|.+|+.+|-+++++|.++.+.+..+
T Consensus 2 ~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~ 38 (66)
T PF01842_consen 2 RVRVIVPDRPGILADVTEILADHGINIDSISQSSDKD 38 (66)
T ss_dssp EEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCC
Confidence 5788999999999999999999999999999998877
No 26
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=96.70 E-value=0.012 Score=42.19 Aligned_cols=48 Identities=21% Similarity=0.417 Sum_probs=41.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEEEEEEEc
Q 037241 239 HISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYMIQVHVN 286 (306)
Q Consensus 239 ~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~i~akv~ 286 (306)
.|.|.|+.++|+|.+|+.+|.++++.|.++.+.+.++.....|++.-.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~ 49 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDS 49 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECC
Confidence 477899999999999999999999999999998877766666766543
No 27
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=96.50 E-value=0.02 Score=42.77 Aligned_cols=53 Identities=15% Similarity=0.306 Sum_probs=42.6
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEee--CCeEEEEEEEEEcCcc
Q 037241 237 EAHISICSPKKPGMFSTICYVLEKHKIEVISAQVSSD--LTRRMYMIQVHVNGAS 289 (306)
Q Consensus 237 ~~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~--~~~v~~~i~akv~~~~ 289 (306)
.+.|+|.+..++|+|.+|+.+|.+.++.|.++++... ++.....|.++|....
T Consensus 6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d~~ 60 (80)
T PF13291_consen 6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKDLE 60 (80)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESSHH
T ss_pred EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECCHH
Confidence 3578899999999999999999999999999999985 4556666999987654
No 28
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=96.47 E-value=0.02 Score=42.70 Aligned_cols=50 Identities=18% Similarity=0.341 Sum_probs=42.9
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEEEEEEEc
Q 037241 237 EAHISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYMIQVHVN 286 (306)
Q Consensus 237 ~~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~i~akv~ 286 (306)
.+.|.+.++.|||++..|..+|.++|.+|+.++.++.++.+..++.+.+.
T Consensus 2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~ 51 (76)
T PF13740_consen 2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP 51 (76)
T ss_dssp EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES
T ss_pred EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC
Confidence 36799999999999999999999999999999999999988877877776
No 29
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=96.29 E-value=0.023 Score=42.53 Aligned_cols=49 Identities=12% Similarity=0.195 Sum_probs=43.3
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEEEEEEEc
Q 037241 238 AHISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYMIQVHVN 286 (306)
Q Consensus 238 ~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~i~akv~ 286 (306)
+.|.+.|+.++|+...|...|-++|.+|+.++....++.++..+...+.
T Consensus 2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~ 50 (77)
T cd04893 2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGS 50 (77)
T ss_pred EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEec
Confidence 5688999999999999999999999999999999988877666766655
No 30
>PRK05007 PII uridylyl-transferase; Provisional
Probab=96.13 E-value=0.016 Score=62.57 Aligned_cols=51 Identities=10% Similarity=0.212 Sum_probs=46.9
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEEEEEEEc
Q 037241 236 DEAHISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYMIQVHVN 286 (306)
Q Consensus 236 ~~~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~i~akv~ 286 (306)
+-..|+|.+..|||||.+|.++|.+++|+|.+|.|+|.++++..+|.+.-.
T Consensus 807 ~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~ 857 (884)
T PRK05007 807 RRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFILATA 857 (884)
T ss_pred CeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcC
Confidence 345799999999999999999999999999999999999999999988643
No 31
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=95.82 E-value=0.049 Score=40.52 Aligned_cols=35 Identities=11% Similarity=0.336 Sum_probs=33.0
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeC
Q 037241 240 ISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDL 274 (306)
Q Consensus 240 I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~ 274 (306)
|.|.|+.++|++.+|.+.|.++|++|...+..+.+
T Consensus 2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~ 36 (81)
T cd04869 2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYS 36 (81)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeec
Confidence 67899999999999999999999999999998876
No 32
>PRK03381 PII uridylyl-transferase; Provisional
Probab=95.79 E-value=0.049 Score=57.93 Aligned_cols=51 Identities=16% Similarity=0.263 Sum_probs=46.9
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEEEEEEEcC
Q 037241 237 EAHISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYMIQVHVNG 287 (306)
Q Consensus 237 ~~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~i~akv~~ 287 (306)
-..|.|.+..+||+|.+|..+|..++|+|++|.|.+.+++++.+|++.-..
T Consensus 707 ~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~~ 757 (774)
T PRK03381 707 ATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGAA 757 (774)
T ss_pred eEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEECCC
Confidence 467999999999999999999999999999999999999999999887443
No 33
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=95.67 E-value=0.0063 Score=56.23 Aligned_cols=55 Identities=25% Similarity=0.373 Sum_probs=48.8
Q ss_pred chhhhccHHHHHHHHHHHHHHHHHHhcCCCC--CCCCChhhHHHHHHHHHHHHHHHH
Q 037241 95 SEHEIHIWTERERRKKMRNMFANLHSLLPQL--PPKADKSSIVDEAVSYIKTLQQTL 149 (306)
Q Consensus 95 ~~~~~h~~~Er~RR~~~~~~~~~Lr~lvP~~--~~k~~k~~iL~~ai~YIk~Lq~~~ 149 (306)
.+|..-|..||+|-..+|+.|..||.++|.. ..|+.|+..|..|-+||..|++-.
T Consensus 71 ~rR~kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~~~ 127 (254)
T KOG3898|consen 71 LRRLKANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSEVL 127 (254)
T ss_pred hhcccccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhcccc
Confidence 4677889999999999999999999999954 279999999999999999998543
No 34
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=95.61 E-value=0.042 Score=59.33 Aligned_cols=51 Identities=14% Similarity=0.264 Sum_probs=46.7
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEEEEEEEc
Q 037241 236 DEAHISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYMIQVHVN 286 (306)
Q Consensus 236 ~~~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~i~akv~ 286 (306)
+-..|.|++..+||||.+|..+|..+||+|+.|.|+|.+++++.+|++.-.
T Consensus 813 ~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~ 863 (895)
T PRK00275 813 PVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDA 863 (895)
T ss_pred CeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECC
Confidence 345799999999999999999999999999999999999999999988643
No 35
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.56 E-value=0.059 Score=39.69 Aligned_cols=47 Identities=15% Similarity=0.430 Sum_probs=36.6
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEEEEEEEc
Q 037241 240 ISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYMIQVHVN 286 (306)
Q Consensus 240 I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~i~akv~ 286 (306)
|.|.|+.++|++.+|.+.|-++|++++..+..+......+.+.+++.
T Consensus 2 i~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~ 48 (74)
T cd04875 2 LTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFE 48 (74)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEE
Confidence 78999999999999999999999999999987633322333344443
No 36
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.48 E-value=0.091 Score=38.27 Aligned_cols=51 Identities=12% Similarity=0.214 Sum_probs=41.3
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeC-CeEEEEEEEEEcCccc
Q 037241 240 ISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDL-TRRMYMIQVHVNGASD 290 (306)
Q Consensus 240 I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~-~~v~~~i~akv~~~~~ 290 (306)
|+|.+..++|+|.+|+.+|.+.+.+|.+.++.... +.....|..++....+
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~~~~~ 53 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAPSEEH 53 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcCCHHH
Confidence 67889999999999999999999999999987764 4444457777765443
No 37
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.41 E-value=0.084 Score=37.52 Aligned_cols=47 Identities=13% Similarity=0.282 Sum_probs=36.5
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEee-----CCeEEEEEEEEEc
Q 037241 240 ISICSPKKPGMFSTICYVLEKHKIEVISAQVSSD-----LTRRMYMIQVHVN 286 (306)
Q Consensus 240 I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~-----~~~v~~~i~akv~ 286 (306)
|.|.++.+||.|.+|+.+|.+.+++|.+...... .+.....|++.+.
T Consensus 1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~ 52 (73)
T cd04886 1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETR 52 (73)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeC
Confidence 3577899999999999999999999998887654 2444444666664
No 38
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.40 E-value=0.041 Score=42.04 Aligned_cols=49 Identities=10% Similarity=0.193 Sum_probs=41.0
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEEEEEEEc
Q 037241 238 AHISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYMIQVHVN 286 (306)
Q Consensus 238 ~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~i~akv~ 286 (306)
+.|.+.|+.+||++..|.+.|-++|++|+..+..+.++.++..+.+.+.
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~ 50 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDIS 50 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeC
Confidence 5789999999999999999999999999999988876655444655544
No 39
>PRK04374 PII uridylyl-transferase; Provisional
Probab=95.35 E-value=0.06 Score=58.00 Aligned_cols=60 Identities=22% Similarity=0.386 Sum_probs=50.4
Q ss_pred ccEEEEEe--CCeEEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEEEEEEEc
Q 037241 227 SNVVLNIC--GDEAHISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYMIQVHVN 286 (306)
Q Consensus 227 ~~V~V~i~--g~~~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~i~akv~ 286 (306)
+.|.+.-. .+-..|.|.+..+||+|.+|..+|..++|+|+.|.|+|.+++++.+|++.-.
T Consensus 784 ~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~ 845 (869)
T PRK04374 784 PRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDE 845 (869)
T ss_pred CeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECC
Confidence 34554432 2346799999999999999999999999999999999999999999988643
No 40
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=95.34 E-value=0.045 Score=58.86 Aligned_cols=50 Identities=6% Similarity=0.257 Sum_probs=46.4
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEEEEEEEc
Q 037241 237 EAHISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYMIQVHVN 286 (306)
Q Consensus 237 ~~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~i~akv~ 286 (306)
-..|+|.+..|||||.+|.++|.++||+|.+|.|+|.++++..+|.+.-.
T Consensus 783 ~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~ 832 (854)
T PRK01759 783 QTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQ 832 (854)
T ss_pred eEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECC
Confidence 35799999999999999999999999999999999999999999988643
No 41
>PRK00194 hypothetical protein; Validated
Probab=95.34 E-value=0.047 Score=41.77 Aligned_cols=50 Identities=14% Similarity=0.234 Sum_probs=41.0
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEEEEEEEc
Q 037241 237 EAHISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYMIQVHVN 286 (306)
Q Consensus 237 ~~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~i~akv~ 286 (306)
.+.|.|.|+.+||++..|...|-++|++|+..+..+.++..+..+.+.+.
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~ 52 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDIS 52 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEec
Confidence 45789999999999999999999999999999988766544444655554
No 42
>PRK03059 PII uridylyl-transferase; Provisional
Probab=95.23 E-value=0.066 Score=57.62 Aligned_cols=48 Identities=21% Similarity=0.347 Sum_probs=45.1
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEEEEE
Q 037241 236 DEAHISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYMIQV 283 (306)
Q Consensus 236 ~~~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~i~a 283 (306)
+-..|.|.++.+||+|.+|..+|..++|+|+.|.|+|.+++++.+|++
T Consensus 785 ~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V 832 (856)
T PRK03059 785 QYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLI 832 (856)
T ss_pred CEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEE
Confidence 345799999999999999999999999999999999999999999988
No 43
>PRK03381 PII uridylyl-transferase; Provisional
Probab=95.14 E-value=0.071 Score=56.74 Aligned_cols=50 Identities=24% Similarity=0.325 Sum_probs=45.5
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEEEEEEE
Q 037241 236 DEAHISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYMIQVHV 285 (306)
Q Consensus 236 ~~~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~i~akv 285 (306)
+.+.|.|+|+.+||+|++|..+|..+|++|+.|+|.+.++.++.+|.+.-
T Consensus 598 ~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~ 647 (774)
T PRK03381 598 HMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSP 647 (774)
T ss_pred CeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEEC
Confidence 55789999999999999999999999999999999998888888887763
No 44
>PRK05092 PII uridylyl-transferase; Provisional
Probab=95.11 E-value=0.088 Score=57.16 Aligned_cols=51 Identities=16% Similarity=0.231 Sum_probs=46.8
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEEEEEEEc
Q 037241 236 DEAHISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYMIQVHVN 286 (306)
Q Consensus 236 ~~~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~i~akv~ 286 (306)
+...|.|.+..+||+|.+|..+|.++||+|.+|.|.+.+++++.+|++.-.
T Consensus 842 ~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~ 892 (931)
T PRK05092 842 RFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDL 892 (931)
T ss_pred CeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCC
Confidence 346799999999999999999999999999999999999999999988654
No 45
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=94.85 E-value=0.092 Score=56.45 Aligned_cols=52 Identities=21% Similarity=0.266 Sum_probs=46.4
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEE-eeCCeEEEEEEEEEcC
Q 037241 236 DEAHISICSPKKPGMFSTICYVLEKHKIEVISAQVS-SDLTRRMYMIQVHVNG 287 (306)
Q Consensus 236 ~~~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is-~~~~~v~~~i~akv~~ 287 (306)
+...|.|.++.++|+|.+|..+|..++|+|+.|.|. +.++.++.+|.+.-..
T Consensus 667 ~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~ 719 (850)
T TIGR01693 667 GGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLF 719 (850)
T ss_pred CeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCC
Confidence 445799999999999999999999999999999999 6788899999887544
No 46
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.77 E-value=0.12 Score=38.32 Aligned_cols=47 Identities=23% Similarity=0.398 Sum_probs=39.2
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEEEEEEEc
Q 037241 240 ISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYMIQVHVN 286 (306)
Q Consensus 240 I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~i~akv~ 286 (306)
|.|..+.|||++.+|.++|-+++++|+..+.++.++.+...+.+.+.
T Consensus 2 vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p 48 (75)
T cd04870 2 ITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIP 48 (75)
T ss_pred EEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcC
Confidence 67889999999999999999999999999888877665444555543
No 47
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=94.56 E-value=0.13 Score=55.27 Aligned_cols=51 Identities=14% Similarity=0.147 Sum_probs=45.4
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEe-eCCeEEEEEEEEEc
Q 037241 236 DEAHISICSPKKPGMFSTICYVLEKHKIEVISAQVSS-DLTRRMYMIQVHVN 286 (306)
Q Consensus 236 ~~~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~-~~~~v~~~i~akv~ 286 (306)
+...|.|+++.++|+|.+|..+|..++|+|+.|.|.+ .++.++.+|.+.-.
T Consensus 676 ~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~ 727 (854)
T PRK01759 676 GGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTEL 727 (854)
T ss_pred CeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCC
Confidence 4467999999999999999999999999999999977 78899999877643
No 48
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.54 E-value=0.12 Score=54.62 Aligned_cols=62 Identities=15% Similarity=0.214 Sum_probs=51.7
Q ss_pred ccEEEEEe--CCeEEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEEEEEEEcCc
Q 037241 227 SNVVLNIC--GDEAHISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYMIQVHVNGA 288 (306)
Q Consensus 227 ~~V~V~i~--g~~~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~i~akv~~~ 288 (306)
+.|.+.-. .+...|+|.+..|||+|..|..+|.+++|+|++|.|++++.++..+|.+..-..
T Consensus 779 p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~~~~ 842 (867)
T COG2844 779 PRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDADG 842 (867)
T ss_pred CceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccccccceeEEEEecccc
Confidence 55555432 345679999999999999999999999999999999999999999987766543
No 49
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=94.54 E-value=0.071 Score=48.70 Aligned_cols=55 Identities=24% Similarity=0.240 Sum_probs=49.0
Q ss_pred hhhhccHHHHHHHHHHHHHHHHHHhcCCCCC--CCCChhhHHHHHHHHHHHHHHHHH
Q 037241 96 EHEIHIWTERERRKKMRNMFANLHSLLPQLP--PKADKSSIVDEAVSYIKTLQQTLR 150 (306)
Q Consensus 96 ~~~~h~~~Er~RR~~~~~~~~~Lr~lvP~~~--~k~~k~~iL~~ai~YIk~Lq~~~~ 150 (306)
+|..-+..||+|-.-+|..|..||..||... .|++|-..|..|-.||--|-..++
T Consensus 174 rr~aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l~ 230 (285)
T KOG4395|consen 174 RRLAANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLLD 230 (285)
T ss_pred hhcccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhhc
Confidence 5678899999999999999999999999874 789999999999999998876554
No 50
>PRK05007 PII uridylyl-transferase; Provisional
Probab=94.49 E-value=0.15 Score=55.17 Aligned_cols=51 Identities=25% Similarity=0.395 Sum_probs=44.4
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCC-eEEEEEEEEEc
Q 037241 236 DEAHISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLT-RRMYMIQVHVN 286 (306)
Q Consensus 236 ~~~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~-~v~~~i~akv~ 286 (306)
+...|.|+|+.++|+|.+|..+|..++|+|+.|.|.+..+ .++.+|.+.-.
T Consensus 700 ~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~ 751 (884)
T PRK05007 700 GGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEP 751 (884)
T ss_pred CeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECC
Confidence 4568999999999999999999999999999999887655 88888877643
No 51
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=94.44 E-value=0.16 Score=54.67 Aligned_cols=52 Identities=13% Similarity=0.176 Sum_probs=47.3
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEEEEEEEcCc
Q 037241 237 EAHISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYMIQVHVNGA 288 (306)
Q Consensus 237 ~~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~i~akv~~~ 288 (306)
-..|.|.|..+||+|.+|.++|.++|++|.++.|++.++++..+|.+....+
T Consensus 779 ~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g 830 (850)
T TIGR01693 779 ATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFG 830 (850)
T ss_pred eEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCCC
Confidence 4679999999999999999999999999999999999999999998876543
No 52
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.31 E-value=0.19 Score=36.67 Aligned_cols=50 Identities=14% Similarity=0.279 Sum_probs=38.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeC-CeEEEEEEEEEcCc
Q 037241 239 HISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDL-TRRMYMIQVHVNGA 288 (306)
Q Consensus 239 ~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~-~~v~~~i~akv~~~ 288 (306)
.|.|.+..++|+|.+|+.+|.+++++|...+..... +.....|.+.+.+.
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~ 52 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTM 52 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCch
Confidence 477889999999999999999999999999875533 33444466666544
No 53
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=94.14 E-value=0.16 Score=55.04 Aligned_cols=52 Identities=13% Similarity=0.221 Sum_probs=44.5
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEE-eeCCeEEEEEEEEEcC
Q 037241 236 DEAHISICSPKKPGMFSTICYVLEKHKIEVISAQVS-SDLTRRMYMIQVHVNG 287 (306)
Q Consensus 236 ~~~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is-~~~~~v~~~i~akv~~ 287 (306)
+...|.|+|+.++|+|++|+.+|..+||+|+.|.|. +.++.++.+|++.-..
T Consensus 703 ~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~ 755 (895)
T PRK00275 703 GGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDD 755 (895)
T ss_pred CeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCC
Confidence 456899999999999999999999999999999985 5667888888776443
No 54
>PRK03059 PII uridylyl-transferase; Provisional
Probab=94.12 E-value=0.16 Score=54.77 Aligned_cols=50 Identities=18% Similarity=0.426 Sum_probs=44.2
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEE-eeCCeEEEEEEEEE
Q 037241 236 DEAHISICSPKKPGMFSTICYVLEKHKIEVISAQVS-SDLTRRMYMIQVHV 285 (306)
Q Consensus 236 ~~~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is-~~~~~v~~~i~akv 285 (306)
+...|.|+|+.++|+|++|..+|..++|+|+.|.|. +.++.++.+|.+.-
T Consensus 677 ~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~ 727 (856)
T PRK03059 677 EGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLD 727 (856)
T ss_pred CeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeC
Confidence 456899999999999999999999999999999995 56788888887764
No 55
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=93.81 E-value=0.26 Score=36.26 Aligned_cols=47 Identities=13% Similarity=0.260 Sum_probs=38.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEEEEEEEcCc
Q 037241 239 HISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYMIQVHVNGA 288 (306)
Q Consensus 239 ~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~i~akv~~~ 288 (306)
.|+|.+..++|+|.+|+.+|.++++++.+.++.+. +. ..|..++.+.
T Consensus 2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~--i~l~i~v~~~ 48 (74)
T cd04877 2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GR--IYLNFPTIEF 48 (74)
T ss_pred EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-Ce--EEEEeEecCH
Confidence 47889999999999999999999999999998765 43 3355566543
No 56
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=93.76 E-value=0.44 Score=34.95 Aligned_cols=47 Identities=17% Similarity=0.245 Sum_probs=37.0
Q ss_pred EEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCC-eEEEEEEEEEcC
Q 037241 241 SICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLT-RRMYMIQVHVNG 287 (306)
Q Consensus 241 ~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~-~v~~~i~akv~~ 287 (306)
.+..+.++|.|.+|+.+|.++++.+++..+....+ .--|.|.+.+.+
T Consensus 3 ~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~ 50 (75)
T cd04880 3 VFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEG 50 (75)
T ss_pred EEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEEC
Confidence 34557799999999999999999999998776554 445666667664
No 57
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=93.71 E-value=0.33 Score=33.13 Aligned_cols=47 Identities=21% Similarity=0.398 Sum_probs=36.8
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeC-CeEEEEEEEEEc
Q 037241 240 ISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDL-TRRMYMIQVHVN 286 (306)
Q Consensus 240 I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~-~~v~~~i~akv~ 286 (306)
|+|.+..++|.+.+|+..|.++++++.+..+...+ +.....|..++.
T Consensus 1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 48 (71)
T cd04876 1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVR 48 (71)
T ss_pred CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEEC
Confidence 46778899999999999999999999999887655 434444555554
No 58
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=93.58 E-value=0.39 Score=30.96 Aligned_cols=35 Identities=20% Similarity=0.493 Sum_probs=30.8
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeC
Q 037241 240 ISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDL 274 (306)
Q Consensus 240 I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~ 274 (306)
|.|.|+.++|.+.+|+.+|..++++|.........
T Consensus 1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence 46788889999999999999999999999886643
No 59
>PRK04435 hypothetical protein; Provisional
Probab=93.45 E-value=0.4 Score=40.61 Aligned_cols=56 Identities=14% Similarity=0.208 Sum_probs=46.0
Q ss_pred EeCCeEEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEee-CCeEEEEEEEEEcCc
Q 037241 233 ICGDEAHISICSPKKPGMFSTICYVLEKHKIEVISAQVSSD-LTRRMYMIQVHVNGA 288 (306)
Q Consensus 233 i~g~~~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~-~~~v~~~i~akv~~~ 288 (306)
..|..+.|.+.+..++|+|.+|+.+|.+++++|++.+.+.. ++....+|++.+.+.
T Consensus 65 ~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~ 121 (147)
T PRK04435 65 VKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSM 121 (147)
T ss_pred CCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCCh
Confidence 46788899999999999999999999999999999987553 454555677777654
No 60
>PRK04374 PII uridylyl-transferase; Provisional
Probab=93.39 E-value=0.25 Score=53.38 Aligned_cols=50 Identities=20% Similarity=0.335 Sum_probs=44.6
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEe-eCCeEEEEEEEEE
Q 037241 236 DEAHISICSPKKPGMFSTICYVLEKHKIEVISAQVSS-DLTRRMYMIQVHV 285 (306)
Q Consensus 236 ~~~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~-~~~~v~~~i~akv 285 (306)
+...|.|+|+.++|+|++|..+|..+||+|+.|.|.+ .++.++.+|.+.-
T Consensus 689 ~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~ 739 (869)
T PRK04374 689 DALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLP 739 (869)
T ss_pred CeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeC
Confidence 4568999999999999999999999999999999997 6778888887753
No 61
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.23 E-value=0.29 Score=35.47 Aligned_cols=47 Identities=19% Similarity=0.287 Sum_probs=40.3
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEEEEEEE
Q 037241 239 HISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYMIQVHV 285 (306)
Q Consensus 239 ~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~i~akv 285 (306)
.|.|.||.+.|+=-+|++.+-+.||.|+...+++.+...+..|-+.-
T Consensus 2 vitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~ 48 (69)
T cd04894 2 VITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVP 48 (69)
T ss_pred EEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEec
Confidence 58899999999999999999999999999999997766555555543
No 62
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=93.23 E-value=0.079 Score=54.63 Aligned_cols=48 Identities=38% Similarity=0.540 Sum_probs=41.5
Q ss_pred hhhhccHHHHHHHHHHHHHHHHHHhcCCCCC----CCCChhhHHHHHHHHHHH
Q 037241 96 EHEIHIWTERERRKKMRNMFANLHSLLPQLP----PKADKSSIVDEAVSYIKT 144 (306)
Q Consensus 96 ~~~~h~~~Er~RR~~~~~~~~~Lr~lvP~~~----~k~~k~~iL~~ai~YIk~ 144 (306)
+|++-..+-|-||.|=|+-|.+|..+|| ++ ..+||++|+.-||.|++-
T Consensus 46 rkEkSRdAARsRRsKEn~~FyeLa~~lP-lp~aisshLDkaSimRLtISyLRl 97 (768)
T KOG3558|consen 46 RKEKSRDAARSRRSKENEEFYELAKLLP-LPAAISSHLDKASIMRLTISYLRL 97 (768)
T ss_pred HhhhhhhhhhhhcccchHHHHHHHHhCC-CcchhhhhhhhHHHHHHHHHHHHH
Confidence 4566667789999999999999999999 43 678999999999999863
No 63
>PRK05092 PII uridylyl-transferase; Provisional
Probab=93.08 E-value=0.35 Score=52.61 Aligned_cols=51 Identities=14% Similarity=0.270 Sum_probs=44.4
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEe-eCCeEEEEEEEEEc
Q 037241 236 DEAHISICSPKKPGMFSTICYVLEKHKIEVISAQVSS-DLTRRMYMIQVHVN 286 (306)
Q Consensus 236 ~~~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~-~~~~v~~~i~akv~ 286 (306)
+...|.|.|+.++|+|.+|..+|..+|++|+.|.|.+ .++.++.+|.+.-.
T Consensus 731 ~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~ 782 (931)
T PRK05092 731 GVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDA 782 (931)
T ss_pred CeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECC
Confidence 4578999999999999999999999999999999887 56777777877643
No 64
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.95 E-value=0.44 Score=34.22 Aligned_cols=49 Identities=20% Similarity=0.261 Sum_probs=38.0
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeC--CeEEEEEEEEEc
Q 037241 238 AHISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDL--TRRMYMIQVHVN 286 (306)
Q Consensus 238 ~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~--~~v~~~i~akv~ 286 (306)
++|.|.+..++|+|.+|+.+|.++++++.+.+..... +.....|.+.+.
T Consensus 1 ~yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~~ 51 (79)
T cd04881 1 YYLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHET 51 (79)
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEccC
Confidence 4789999999999999999999999999999876543 434344544443
No 65
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=92.83 E-value=0.5 Score=32.49 Aligned_cols=45 Identities=13% Similarity=0.279 Sum_probs=35.5
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeC-CeEEEEEEEE
Q 037241 240 ISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDL-TRRMYMIQVH 284 (306)
Q Consensus 240 I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~-~~v~~~i~ak 284 (306)
|.|..+.+||.|.+|+.+|-+.+++|.+..+.... +..+..|...
T Consensus 1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~ 46 (56)
T cd04889 1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFS 46 (56)
T ss_pred CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEEC
Confidence 35678899999999999999999999888877655 5555555443
No 66
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.83 E-value=0.63 Score=32.87 Aligned_cols=36 Identities=22% Similarity=0.319 Sum_probs=31.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeC
Q 037241 239 HISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDL 274 (306)
Q Consensus 239 ~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~ 274 (306)
.|.|.++.++|.|.+|+..|.+++++|.+.+.....
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~ 37 (72)
T cd04874 2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIER 37 (72)
T ss_pred eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccC
Confidence 467889999999999999999999999998876653
No 67
>PRK08577 hypothetical protein; Provisional
Probab=92.58 E-value=0.77 Score=38.10 Aligned_cols=52 Identities=15% Similarity=0.337 Sum_probs=41.5
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeC-CeEE-EEEEEEEcCc
Q 037241 237 EAHISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDL-TRRM-YMIQVHVNGA 288 (306)
Q Consensus 237 ~~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~-~~v~-~~i~akv~~~ 288 (306)
.+.|.|.+..++|+|.+|+.+|.++++++.+.+..+.. +..+ ..|.+.+...
T Consensus 56 ~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~ 109 (136)
T PRK08577 56 LVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKS 109 (136)
T ss_pred EEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCc
Confidence 57899999999999999999999999999988877654 3333 3466777653
No 68
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=92.32 E-value=0.93 Score=33.74 Aligned_cols=49 Identities=18% Similarity=0.320 Sum_probs=38.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeC-CeEEEEEEEEEcC
Q 037241 239 HISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDL-TRRMYMIQVHVNG 287 (306)
Q Consensus 239 ~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~-~~v~~~i~akv~~ 287 (306)
.|.+..+.++|.|.+|+..|.++++++++..+.... +...|.|++.++.
T Consensus 3 sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~ 52 (80)
T cd04905 3 SIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEG 52 (80)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEEC
Confidence 455666789999999999999999999999876653 3455677777764
No 69
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=92.28 E-value=0.72 Score=32.99 Aligned_cols=45 Identities=16% Similarity=0.323 Sum_probs=36.3
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEEEEEEE
Q 037241 239 HISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYMIQVHV 285 (306)
Q Consensus 239 ~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~i~akv 285 (306)
.|.|..+.+||.|.+|+.+|.+.+++|.+.-+....+. .+++..+
T Consensus 3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~~ 47 (66)
T cd04908 3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLIV 47 (66)
T ss_pred EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEEE
Confidence 47778899999999999999999999999887665553 3444454
No 70
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=92.07 E-value=0.66 Score=32.46 Aligned_cols=44 Identities=20% Similarity=0.360 Sum_probs=34.9
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeC--CeEEEEEEE
Q 037241 240 ISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDL--TRRMYMIQV 283 (306)
Q Consensus 240 I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~--~~v~~~i~a 283 (306)
+.|....++|+|.+|+.+|.+++++|.+..+.... +.....|++
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v 47 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV 47 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence 56788899999999999999999999999987654 444344433
No 71
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=91.85 E-value=1 Score=31.57 Aligned_cols=47 Identities=17% Similarity=0.235 Sum_probs=37.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEee--CCeEEEEEEEEE
Q 037241 239 HISICSPKKPGMFSTICYVLEKHKIEVISAQVSSD--LTRRMYMIQVHV 285 (306)
Q Consensus 239 ~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~--~~~v~~~i~akv 285 (306)
.|.|.+..++|+|.+|+..|.++++++.+.+.... ++.....|.+.+
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 50 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEG 50 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEEC
Confidence 46778889999999999999999999999987664 344445566555
No 72
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=91.33 E-value=0.97 Score=34.07 Aligned_cols=60 Identities=10% Similarity=0.104 Sum_probs=43.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEEEEEEEcCccccccCCCChHHHHHh
Q 037241 239 HISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYMIQVHVNGASDQFSEALPVEEMYKQ 304 (306)
Q Consensus 239 ~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~i~akv~~~~~~~~~~~~~ee~~k~ 304 (306)
.|.+....+||+|.+|..++...|++|.+.++....+.-+.-|+..+.+.. ..++.++||
T Consensus 4 tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~~------~~i~qi~kQ 63 (76)
T PRK06737 4 TFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTE------NEATLLVSQ 63 (76)
T ss_pred EEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECCH------HHHHHHHHH
Confidence 578888999999999999999999999999988655444443444433221 356666665
No 73
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=91.25 E-value=1.5 Score=33.02 Aligned_cols=59 Identities=15% Similarity=0.296 Sum_probs=45.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEEEEEEEcCccccccCCCChHHHHHh
Q 037241 239 HISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYMIQVHVNGASDQFSEALPVEEMYKQ 304 (306)
Q Consensus 239 ~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~i~akv~~~~~~~~~~~~~ee~~k~ 304 (306)
.|.|....+||.|.+|+.++...|+.|.+.++....+.-+.-|+.-+.+ ...+|.++||
T Consensus 5 ~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~~-------~~~i~ql~kQ 63 (76)
T PRK11152 5 QLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVAS-------ERPIDLLSSQ 63 (76)
T ss_pred EEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEECC-------CchHHHHHHH
Confidence 5788888999999999999999999999999987555444445555531 2566777765
No 74
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.21 E-value=0.99 Score=31.67 Aligned_cols=33 Identities=27% Similarity=0.497 Sum_probs=29.8
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEe
Q 037241 240 ISICSPKKPGMFSTICYVLEKHKIEVISAQVSS 272 (306)
Q Consensus 240 I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~ 272 (306)
|.+.+..++|.|.+|+..|.+++++|.+.....
T Consensus 2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~ 34 (71)
T cd04903 2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSR 34 (71)
T ss_pred EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEe
Confidence 567889999999999999999999999888765
No 75
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.07 E-value=0.64 Score=32.50 Aligned_cols=34 Identities=21% Similarity=0.347 Sum_probs=29.4
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEee
Q 037241 240 ISICSPKKPGMFSTICYVLEKHKIEVISAQVSSD 273 (306)
Q Consensus 240 I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~ 273 (306)
|.|..+.+||.|.+|+..|.+++++|.+......
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~ 35 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVE 35 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEcc
Confidence 5677889999999999999999999988776544
No 76
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=90.92 E-value=1.1 Score=38.75 Aligned_cols=60 Identities=17% Similarity=0.308 Sum_probs=43.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEEEEEEEcCccccccCCCChHHHHHh
Q 037241 239 HISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYMIQVHVNGASDQFSEALPVEEMYKQ 304 (306)
Q Consensus 239 ~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~i~akv~~~~~~~~~~~~~ee~~k~ 304 (306)
.|.|..+.+||.|.+|...|...|++|.+..+....+.-++-|...+.... ..++.++||
T Consensus 4 ~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~~~------~~i~qi~kQ 63 (161)
T PRK11895 4 TLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGDE------QVIEQITKQ 63 (161)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEECCH------HHHHHHHHH
Confidence 578889999999999999999999999999988765333333444444321 345666655
No 77
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.76 E-value=1.7 Score=31.17 Aligned_cols=47 Identities=17% Similarity=0.467 Sum_probs=35.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEee--CCeEEEEEEEEE
Q 037241 239 HISICSPKKPGMFSTICYVLEKHKIEVISAQVSSD--LTRRMYMIQVHV 285 (306)
Q Consensus 239 ~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~--~~~v~~~i~akv 285 (306)
.|.|..+.++|.|.+|+..|.++++.|.+...... .+.....|++..
T Consensus 3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~ 51 (72)
T cd04883 3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQT 51 (72)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEec
Confidence 57788999999999999999999999998865433 234445555444
No 78
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.66 E-value=1.2 Score=31.81 Aligned_cols=35 Identities=14% Similarity=0.358 Sum_probs=30.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEee
Q 037241 239 HISICSPKKPGMFSTICYVLEKHKIEVISAQVSSD 273 (306)
Q Consensus 239 ~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~ 273 (306)
.+.|.++.++|.|.+|+..|.+++++|........
T Consensus 3 ~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~ 37 (69)
T cd04909 3 DLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEI 37 (69)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEe
Confidence 47788999999999999999999999998876554
No 79
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.50 E-value=1.5 Score=31.86 Aligned_cols=34 Identities=18% Similarity=0.325 Sum_probs=30.2
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEee
Q 037241 240 ISICSPKKPGMFSTICYVLEKHKIEVISAQVSSD 273 (306)
Q Consensus 240 I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~ 273 (306)
+.|..+.+||.|.+|+..|.++|++|++......
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~ 35 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE 35 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence 5677889999999999999999999999987654
No 80
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=89.59 E-value=1.7 Score=37.37 Aligned_cols=60 Identities=18% Similarity=0.298 Sum_probs=43.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEEEEEEEcCccccccCCCChHHHHHh
Q 037241 239 HISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYMIQVHVNGASDQFSEALPVEEMYKQ 304 (306)
Q Consensus 239 ~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~i~akv~~~~~~~~~~~~~ee~~k~ 304 (306)
.|.|..+.++|.|.+|...|...|+++.+..+...++.-+.-|+..|... ...++.+.||
T Consensus 3 ~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~d------~~~i~qi~kQ 62 (157)
T TIGR00119 3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVGD------DKVLEQITKQ 62 (157)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEECC------HHHHHHHHHH
Confidence 57888999999999999999999999999998876533333344444431 1345555554
No 81
>PRK07334 threonine dehydratase; Provisional
Probab=89.55 E-value=1.7 Score=42.73 Aligned_cols=52 Identities=10% Similarity=0.192 Sum_probs=42.8
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEee-----CCeEEEEEEEEEcCcc
Q 037241 238 AHISICSPKKPGMFSTICYVLEKHKIEVISAQVSSD-----LTRRMYMIQVHVNGAS 289 (306)
Q Consensus 238 ~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~-----~~~v~~~i~akv~~~~ 289 (306)
+.|.|.+..|+|+|.+|+.+|.+.+++|.++++.+. ++.....|+.+|+...
T Consensus 327 v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~d~~ 383 (403)
T PRK07334 327 ARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETRDAA 383 (403)
T ss_pred EEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeCCHH
Confidence 789999999999999999999999999999998764 3444445777776543
No 82
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=89.40 E-value=0.38 Score=46.96 Aligned_cols=43 Identities=37% Similarity=0.500 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCC---CCCChhhHHHHHHHHHHH
Q 037241 102 WTERERRKKMRNMFANLHSLLPQLP---PKADKSSIVDEAVSYIKT 144 (306)
Q Consensus 102 ~~Er~RR~~~~~~~~~Lr~lvP~~~---~k~~k~~iL~~ai~YIk~ 144 (306)
-+-|.||++-|--|.+|..+||-.. ...||++|+.-+..|||.
T Consensus 7 naA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKm 52 (598)
T KOG3559|consen 7 NAARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKM 52 (598)
T ss_pred hHHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHH
Confidence 3558899999999999999999642 679999999999999985
No 83
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=89.05 E-value=1.6 Score=33.58 Aligned_cols=61 Identities=7% Similarity=0.123 Sum_probs=43.9
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEEEEEEEcCccccccCCCChHHHHHh
Q 037241 239 HISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYMIQVHVNGASDQFSEALPVEEMYKQ 304 (306)
Q Consensus 239 ~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~i~akv~~~~~~~~~~~~~ee~~k~ 304 (306)
.|.+....++|+|.+|..+|-..|+.|.+.++....+.-+.-|+..+..+. ...+|.+.||
T Consensus 4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d-----~~~ieqI~kQ 64 (84)
T PRK13562 4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQD-----DTSLHILIKK 64 (84)
T ss_pred EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCC-----HHHHHHHHHH
Confidence 578888999999999999999999999998888766544444444443111 1345666665
No 84
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=89.04 E-value=2.3 Score=40.02 Aligned_cols=50 Identities=12% Similarity=0.268 Sum_probs=39.5
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEEEEEEEc
Q 037241 237 EAHISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYMIQVHVN 286 (306)
Q Consensus 237 ~~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~i~akv~ 286 (306)
.+.|.|.|+.++|+..+|...|-+++++|...+..+....-++++.+.+.
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~ 56 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFH 56 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEe
Confidence 46789999999999999999999999999999987533333444455554
No 85
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=88.82 E-value=0.095 Score=54.01 Aligned_cols=69 Identities=25% Similarity=0.288 Sum_probs=59.3
Q ss_pred chhhhccHHHHHHHHHHHHHHHHHHhcCCCCC----CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 037241 95 SEHEIHIWTERERRKKMRNMFANLHSLLPQLP----PKADKSSIVDEAVSYIKTLQQTLRKLQKQKLERLQGV 163 (306)
Q Consensus 95 ~~~~~h~~~Er~RR~~~~~~~~~Lr~lvP~~~----~k~~k~~iL~~ai~YIk~Lq~~~~~L~~~~~~~~~~~ 163 (306)
++...|+-+|++||..++-+|..|.+++.+.. .|+.++.-+...+.||..+++....+.+|-..++..+
T Consensus 650 ~r~it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~e~~~lr~~~ 722 (856)
T KOG3582|consen 650 NRPITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQEEAHSLRKEI 722 (856)
T ss_pred CCcccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccchhhhhhhhhh
Confidence 67899999999999999999999999987653 5778888899999999999998888887776665544
No 86
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=88.67 E-value=0.41 Score=48.34 Aligned_cols=39 Identities=33% Similarity=0.543 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCCC---CCCChhhHHHHHHHHHH
Q 037241 105 RERRKKMRNMFANLHSLLPQLP---PKADKSSIVDEAVSYIK 143 (306)
Q Consensus 105 r~RR~~~~~~~~~Lr~lvP~~~---~k~~k~~iL~~ai~YIk 143 (306)
++-|+++|.-+..|.+|||... .|.||.+||.-++.|++
T Consensus 34 KRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr 75 (712)
T KOG3560|consen 34 KRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLR 75 (712)
T ss_pred hhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHH
Confidence 5578999999999999999754 79999999999999975
No 87
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=88.58 E-value=1.9 Score=31.04 Aligned_cols=53 Identities=23% Similarity=0.377 Sum_probs=36.6
Q ss_pred CCCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEEEEEEEcCccccccCCCChHHHHHh
Q 037241 246 KKPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYMIQVHVNGASDQFSEALPVEEMYKQ 304 (306)
Q Consensus 246 ~r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~i~akv~~~~~~~~~~~~~ee~~k~ 304 (306)
.+||.|.+|+.++...|++|.+.++....+.-++-|+..+.+.. ..++.+++|
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~~------~~i~~l~~Q 53 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGDD------REIEQLVKQ 53 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-C------CHHHHHHHH
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeCc------hhHHHHHHH
Confidence 36899999999999999999999999855444455555555422 345556555
No 88
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=86.95 E-value=3.2 Score=32.20 Aligned_cols=50 Identities=8% Similarity=0.202 Sum_probs=39.0
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCCe-EEEEEEEEEcC
Q 037241 238 AHISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLTR-RMYMIQVHVNG 287 (306)
Q Consensus 238 ~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~~-v~~~i~akv~~ 287 (306)
..|-+..+.++|.|.+||.+|..+++.+.+..+-..... --|.|.+.++.
T Consensus 15 tslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg 65 (90)
T cd04931 15 ISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDK 65 (90)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEc
Confidence 445666688999999999999999999999998765433 33556667764
No 89
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=86.85 E-value=1.8 Score=45.98 Aligned_cols=55 Identities=15% Similarity=0.354 Sum_probs=46.7
Q ss_pred EEEEeCCeEEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEee-CCeEEEEEEEE
Q 037241 230 VLNICGDEAHISICSPKKPGMFSTICYVLEKHKIEVISAQVSSD-LTRRMYMIQVH 284 (306)
Q Consensus 230 ~V~i~g~~~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~-~~~v~~~i~ak 284 (306)
.++...+...|.|.|+.+|.+|+.|+.++...|++|+.|+|-+. +++.+.+|.+.
T Consensus 677 ~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~ 732 (867)
T COG2844 677 SVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVL 732 (867)
T ss_pred eecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEe
Confidence 34455677899999999999999999999999999999999875 45699997554
No 90
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=86.69 E-value=1.7 Score=31.03 Aligned_cols=44 Identities=18% Similarity=0.376 Sum_probs=34.0
Q ss_pred EEEcCCCCChHHHHHHHHHhCCCEEEEEEEEee--CCeEEEEEEEE
Q 037241 241 SICSPKKPGMFSTICYVLEKHKIEVISAQVSSD--LTRRMYMIQVH 284 (306)
Q Consensus 241 ~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~--~~~v~~~i~ak 284 (306)
-+..+.++|.+.+|...|.+++++|.+..+... ++..+..|.+.
T Consensus 3 ~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~ 48 (73)
T cd04902 3 VVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVD 48 (73)
T ss_pred EEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeC
Confidence 457789999999999999999999988876553 35555555443
No 91
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=86.17 E-value=2.4 Score=31.26 Aligned_cols=48 Identities=8% Similarity=0.132 Sum_probs=37.6
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCCe-EEEEEEEEEcC
Q 037241 240 ISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLTR-RMYMIQVHVNG 287 (306)
Q Consensus 240 I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~~-v~~~i~akv~~ 287 (306)
|-+..+.++|.|.+||..|..+++++.+..+-...+. --|.|.+.+.+
T Consensus 3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~ 51 (74)
T cd04904 3 LIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEV 51 (74)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEc
Confidence 3445577999999999999999999999998765543 34567777765
No 92
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=85.76 E-value=2.8 Score=39.30 Aligned_cols=36 Identities=22% Similarity=0.440 Sum_probs=33.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeC
Q 037241 239 HISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDL 274 (306)
Q Consensus 239 ~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~ 274 (306)
.|.|.|+.++|+...|-..|-++|++|+.++-+...
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~ 37 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDP 37 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcC
Confidence 478999999999999999999999999999987754
No 93
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=85.26 E-value=3.5 Score=38.73 Aligned_cols=39 Identities=15% Similarity=0.373 Sum_probs=35.8
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEe--eCC
Q 037241 237 EAHISICSPKKPGMFSTICYVLEKHKIEVISAQVSS--DLT 275 (306)
Q Consensus 237 ~~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~--~~~ 275 (306)
.+.|.|.|+.|+|+...|.++|-++|++|+..+.++ ..+
T Consensus 6 ~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g 46 (286)
T PRK06027 6 RYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETG 46 (286)
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCC
Confidence 467899999999999999999999999999999988 655
No 94
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=83.51 E-value=3.9 Score=43.29 Aligned_cols=53 Identities=11% Similarity=0.108 Sum_probs=43.6
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCCeE-EEEEEEEEcCcc
Q 037241 237 EAHISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLTRR-MYMIQVHVNGAS 289 (306)
Q Consensus 237 ~~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~~v-~~~i~akv~~~~ 289 (306)
.+.|.|.+..++|+|.+|+.+|-+.+++|.++++.+.++.. ...|..+|....
T Consensus 626 ~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV~~~~ 679 (702)
T PRK11092 626 IAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTARDRV 679 (702)
T ss_pred EEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEECCHH
Confidence 35688999999999999999999999999999987765444 344888887653
No 95
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=82.91 E-value=4.2 Score=42.86 Aligned_cols=54 Identities=13% Similarity=0.224 Sum_probs=44.2
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeC-CeEEEEEEEEEcCccc
Q 037241 237 EAHISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDL-TRRMYMIQVHVNGASD 290 (306)
Q Consensus 237 ~~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~-~~v~~~i~akv~~~~~ 290 (306)
.+.|.|.+..++|+|.+|+.+|-+.+++|.++++.... +.....|.++|....+
T Consensus 610 ~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV~~~~~ 664 (683)
T TIGR00691 610 IVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEIKNYKH 664 (683)
T ss_pred EEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEECCHHH
Confidence 35688999999999999999999999999999998764 4444448888876543
No 96
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=82.56 E-value=8.1 Score=30.46 Aligned_cols=61 Identities=20% Similarity=0.284 Sum_probs=44.9
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEEEEEEEcCccccccCCCChHHHHHh
Q 037241 237 EAHISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYMIQVHVNGASDQFSEALPVEEMYKQ 304 (306)
Q Consensus 237 ~~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~i~akv~~~~~~~~~~~~~ee~~k~ 304 (306)
...|.+....+||+|.+|...|-..|+.|-+.++....+.-+.-|+.-+.+ + ..+|+++||
T Consensus 8 ~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~~--~-----~~i~Qi~kQ 68 (96)
T PRK08178 8 NVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVND--D-----QRLEQMISQ 68 (96)
T ss_pred CEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEcC--c-----hHHHHHHHH
Confidence 356888899999999999999999998888888876655444444444432 1 357777776
No 97
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=81.90 E-value=1 Score=31.99 Aligned_cols=46 Identities=17% Similarity=0.291 Sum_probs=33.5
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEEEEEEE
Q 037241 240 ISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYMIQVHV 285 (306)
Q Consensus 240 I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~i~akv 285 (306)
|-+.+..++|+|.+|+.+|.+.++++...+....++..+..|...+
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~~ 47 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDIDS 47 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcCC
Confidence 3456788999999999999999999977766544444444454443
No 98
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=81.79 E-value=3.4 Score=38.96 Aligned_cols=35 Identities=11% Similarity=0.293 Sum_probs=32.6
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEE
Q 037241 237 EAHISICSPKKPGMFSTICYVLEKHKIEVISAQVS 271 (306)
Q Consensus 237 ~~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is 271 (306)
.+.|.|.|+.++|+...|...|-++|++|+.++-.
T Consensus 9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~ 43 (289)
T PRK13010 9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQF 43 (289)
T ss_pred CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccc
Confidence 45799999999999999999999999999999985
No 99
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=80.68 E-value=6.3 Score=41.95 Aligned_cols=54 Identities=13% Similarity=0.265 Sum_probs=43.5
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeC--CeEEEEEEEEEcCccc
Q 037241 237 EAHISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDL--TRRMYMIQVHVNGASD 290 (306)
Q Consensus 237 ~~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~--~~v~~~i~akv~~~~~ 290 (306)
.+.|.|.+..++|+|.+|+.+|.+.+++|+++++.+.. +.....|+++|....+
T Consensus 666 ~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~~~~ 721 (743)
T PRK10872 666 SLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQV 721 (743)
T ss_pred EEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECCHHH
Confidence 35688899999999999999999999999999987653 4444448888876543
No 100
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=80.31 E-value=7.8 Score=28.79 Aligned_cols=47 Identities=11% Similarity=0.129 Sum_probs=36.2
Q ss_pred EEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCC-eEEEEEEEEEcCc
Q 037241 242 ICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLT-RRMYMIQVHVNGA 288 (306)
Q Consensus 242 I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~-~v~~~i~akv~~~ 288 (306)
+..+.++|.|.+||..|+.+++.+.+..+-...+ .--|.|.+.+++.
T Consensus 5 ~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~~ 52 (74)
T cd04929 5 FSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCECD 52 (74)
T ss_pred EEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcC
Confidence 4447789999999999999999999999876543 3345666676643
No 101
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=79.50 E-value=6.9 Score=28.06 Aligned_cols=47 Identities=11% Similarity=0.248 Sum_probs=33.7
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeC-CeEEEEEEEEEcC
Q 037241 240 ISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDL-TRRMYMIQVHVNG 287 (306)
Q Consensus 240 I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~-~~v~~~i~akv~~ 287 (306)
+.|.-+.+||-|.+++++|.+ +.+|+..+....+ +.....|.+++.+
T Consensus 1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~ 48 (68)
T cd04885 1 FAVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPD 48 (68)
T ss_pred CEEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCC
Confidence 356788999999999999999 9999988876532 2222334445544
No 102
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=78.65 E-value=8.6 Score=35.86 Aligned_cols=52 Identities=19% Similarity=0.464 Sum_probs=40.2
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEEEEEEEcC
Q 037241 236 DEAHISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYMIQVHVNG 287 (306)
Q Consensus 236 ~~~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~i~akv~~ 287 (306)
+.+.+.|.|+.++|+...|-..|-++|..|+.++-......-.+...+++..
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~ 57 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEG 57 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEec
Confidence 3467899999999999999999999999999998774433334444555543
No 103
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=78.34 E-value=7.2 Score=41.22 Aligned_cols=68 Identities=13% Similarity=0.207 Sum_probs=49.8
Q ss_pred CCeEEEEEEc-CCCCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEEEEEEEcCccccccCCCChHHHHHhh
Q 037241 235 GDEAHISICS-PKKPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYMIQVHVNGASDQFSEALPVEEMYKQA 305 (306)
Q Consensus 235 g~~~~I~I~c-~~r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~i~akv~~~~~~~~~~~~~ee~~k~a 305 (306)
.++..+.|.. +.++|+|+++..+|--+++.|.+|++.+ ++..+..|.+.-.-+.. ++.....+.|+.|
T Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~ 612 (693)
T PRK00227 544 EEDGFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQD--FDPQEFLQAYKSG 612 (693)
T ss_pred ccCCeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCC--CChHHHHHHHHHh
Confidence 4445666665 9999999999999999999999999999 66666667666543322 3445556666554
No 104
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=77.73 E-value=8.1 Score=33.73 Aligned_cols=48 Identities=15% Similarity=0.250 Sum_probs=37.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEEEEEEEc
Q 037241 239 HISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYMIQVHVN 286 (306)
Q Consensus 239 ~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~i~akv~ 286 (306)
.|.|....+||+|.+|...|-..|++|.+.++....+.-+.-++..+.
T Consensus 4 ~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~ 51 (174)
T CHL00100 4 TLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVP 51 (174)
T ss_pred EEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEE
Confidence 578889999999999999999999999999997644333333433444
No 105
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=77.64 E-value=9.6 Score=25.13 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=22.4
Q ss_pred CCChHHHHHHHHHhCCCEEEEEEEEe
Q 037241 247 KPGMFSTICYVLEKHKIEVISAQVSS 272 (306)
Q Consensus 247 r~glL~~Il~aLe~l~LdVvsa~is~ 272 (306)
.++.+.+|+++|.++++.|.....+.
T Consensus 13 ~~~~~~~i~~~l~~~~i~i~~i~~~~ 38 (60)
T cd04868 13 TPGVAAKIFSALAEAGINVDMISQSE 38 (60)
T ss_pred CCCHHHHHHHHHHHCCCcEEEEEcCC
Confidence 67899999999999999998776543
No 106
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=76.39 E-value=4.7 Score=35.62 Aligned_cols=48 Identities=10% Similarity=0.171 Sum_probs=40.1
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEEEEE
Q 037241 236 DEAHISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYMIQV 283 (306)
Q Consensus 236 ~~~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~i~a 283 (306)
..+.|.+..+.|||+...|-++|-++|.+++.++.+..++.+-.++.+
T Consensus 7 ~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lv 54 (190)
T PRK11589 7 HYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLL 54 (190)
T ss_pred cEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEE
Confidence 346788999999999999999999999999999999888754333433
No 107
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=75.78 E-value=9.4 Score=30.93 Aligned_cols=50 Identities=10% Similarity=0.033 Sum_probs=37.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCCe-EEEEEEEEEcCc
Q 037241 239 HISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLTR-RMYMIQVHVNGA 288 (306)
Q Consensus 239 ~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~~-v~~~i~akv~~~ 288 (306)
.|-+..+.++|.|.+||..|..+|+.+.+..+-..... --|.|.+.++..
T Consensus 43 Slifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg~ 93 (115)
T cd04930 43 TLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEVH 93 (115)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEeC
Confidence 45555578999999999999999999999998775433 335566666543
No 108
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=74.78 E-value=16 Score=25.38 Aligned_cols=32 Identities=13% Similarity=0.159 Sum_probs=24.7
Q ss_pred CCCChHHHHHHHHHhCCCEEEEEEEEeeCCeE
Q 037241 246 KKPGMFSTICYVLEKHKIEVISAQVSSDLTRR 277 (306)
Q Consensus 246 ~r~glL~~Il~aLe~l~LdVvsa~is~~~~~v 277 (306)
.+++.+.+|+++|.+.+++|.-.+.+..+..+
T Consensus 13 ~~~~~~~~if~~L~~~~I~v~~i~q~~s~~~i 44 (66)
T cd04919 13 NMIGIAGRMFTTLADHRINIEMISQGASEINI 44 (66)
T ss_pred CCcCHHHHHHHHHHHCCCCEEEEEecCccceE
Confidence 46899999999999999999766654434333
No 109
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=74.71 E-value=2.3 Score=36.24 Aligned_cols=45 Identities=20% Similarity=0.319 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCC-CCCChhhHHHHHHHHHHHHHH
Q 037241 103 TERERRKKMRNMFANLHSLLPQLP-PKADKSSIVDEAVSYIKTLQQ 147 (306)
Q Consensus 103 ~Er~RR~~~~~~~~~Lr~lvP~~~-~k~~k~~iL~~ai~YIk~Lq~ 147 (306)
.||.|.+++++.|.-|+.|+|+.+ .++.+.--|.-+.+||.+|.+
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgspa~gk~~~ktlr~~~~~~~~~dE 74 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGSPADGKRGKKTLRIGTDSIQSLDE 74 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCCCCcccccccccccCCCchhhHHH
Confidence 699999999999999999999985 333333336666677766543
No 110
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=74.62 E-value=17 Score=25.10 Aligned_cols=36 Identities=17% Similarity=0.275 Sum_probs=26.6
Q ss_pred EEEEEcC---CCCChHHHHHHHHHhCCCEEEEEEEEeeC
Q 037241 239 HISICSP---KKPGMFSTICYVLEKHKIEVISAQVSSDL 274 (306)
Q Consensus 239 ~I~I~c~---~r~glL~~Il~aLe~l~LdVvsa~is~~~ 274 (306)
.|.|.+. ..++++.+|+++|.+.++.|.-.+.+..+
T Consensus 3 ~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~s~ 41 (66)
T cd04922 3 ILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGSSE 41 (66)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcc
Confidence 3445443 46899999999999999999777654433
No 111
>PRK06382 threonine dehydratase; Provisional
Probab=74.50 E-value=11 Score=37.06 Aligned_cols=49 Identities=18% Similarity=0.253 Sum_probs=38.2
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEE----ee-CCeEEEEEEEEEc
Q 037241 238 AHISICSPKKPGMFSTICYVLEKHKIEVISAQVS----SD-LTRRMYMIQVHVN 286 (306)
Q Consensus 238 ~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is----~~-~~~v~~~i~akv~ 286 (306)
+.|.|..+.+||.|.+|++.|.+++++|++.... .. .+....+|+++..
T Consensus 331 ~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~ 384 (406)
T PRK06382 331 VRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR 384 (406)
T ss_pred EEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC
Confidence 6788889999999999999999999999988764 22 2344455666665
No 112
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=73.79 E-value=15 Score=24.75 Aligned_cols=34 Identities=24% Similarity=0.358 Sum_probs=26.5
Q ss_pred EEEEEcC---CCCChHHHHHHHHHhCCCEEEEEEEEe
Q 037241 239 HISICSP---KKPGMFSTICYVLEKHKIEVISAQVSS 272 (306)
Q Consensus 239 ~I~I~c~---~r~glL~~Il~aLe~l~LdVvsa~is~ 272 (306)
.|.|.+. ..++.+.+|+++|.+.++.|.....+.
T Consensus 2 ~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~~~ 38 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQGS 38 (65)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEcCC
Confidence 3555433 467899999999999999998887644
No 113
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=73.10 E-value=19 Score=27.12 Aligned_cols=48 Identities=17% Similarity=0.344 Sum_probs=32.4
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeC-CeEEEEEEEEEcC
Q 037241 238 AHISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDL-TRRMYMIQVHVNG 287 (306)
Q Consensus 238 ~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~-~~v~~~i~akv~~ 287 (306)
.+|.|.-+.+||-|.+++++|- +.+|......... +.....|..++.+
T Consensus 2 ~vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~~ 50 (85)
T cd04906 2 ALLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVAN 50 (85)
T ss_pred eEEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeCC
Confidence 4688999999999999999999 5566555554322 2333335556654
No 114
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=73.06 E-value=11 Score=39.82 Aligned_cols=53 Identities=23% Similarity=0.365 Sum_probs=43.9
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEE-EEEEEcCcc
Q 037241 237 EAHISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYM-IQVHVNGAS 289 (306)
Q Consensus 237 ~~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~-i~akv~~~~ 289 (306)
.+.|.|...+++|+|.+|+++|-+.+..|++++..+..+.+..+ |..+|....
T Consensus 627 ~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~v~n~~ 680 (701)
T COG0317 627 PVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIEVKNLN 680 (701)
T ss_pred EEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEEECcHH
Confidence 45688889999999999999999999999999998875555555 777776543
No 115
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=72.00 E-value=19 Score=24.88 Aligned_cols=34 Identities=24% Similarity=0.260 Sum_probs=25.9
Q ss_pred CCCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEEE
Q 037241 246 KKPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYMI 281 (306)
Q Consensus 246 ~r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~i 281 (306)
..+|++.+|+++|++++++|..... ..+.+-++|
T Consensus 12 ~~~~~~~~if~~l~~~~i~v~~i~t--~~~~is~~v 45 (62)
T cd04890 12 GEVGFLRKIFEILEKHGISVDLIPT--SENSVTLYL 45 (62)
T ss_pred cccCHHHHHHHHHHHcCCeEEEEec--CCCEEEEEE
Confidence 4688999999999999999998853 334444444
No 116
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=70.49 E-value=4 Score=31.74 Aligned_cols=49 Identities=14% Similarity=0.271 Sum_probs=40.4
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEEEEEEEc
Q 037241 238 AHISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYMIQVHVN 286 (306)
Q Consensus 238 ~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~i~akv~ 286 (306)
+.|.|.-..|+|+...|..+|-+++++++..+=+-.++++-..+.+.+.
T Consensus 4 avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~ 52 (90)
T COG3830 4 AVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDIS 52 (90)
T ss_pred EEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCC
Confidence 5788888899999999999999999999999987777765444555443
No 117
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=69.81 E-value=24 Score=24.83 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=20.1
Q ss_pred CCCChHHHHHHHHHhCCCEEEE
Q 037241 246 KKPGMFSTICYVLEKHKIEVIS 267 (306)
Q Consensus 246 ~r~glL~~Il~aLe~l~LdVvs 267 (306)
..+|++.+++.+|.+.++.|+.
T Consensus 13 ~~~gi~~~if~aL~~~~I~v~~ 34 (64)
T cd04937 13 GVPGVMAKIVGALSKEGIEILQ 34 (64)
T ss_pred CCcCHHHHHHHHHHHCCCCEEE
Confidence 5799999999999999999973
No 118
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=69.13 E-value=20 Score=34.67 Aligned_cols=49 Identities=12% Similarity=0.213 Sum_probs=38.1
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEee-----CCeEEEEEEEEEc
Q 037241 238 AHISICSPKKPGMFSTICYVLEKHKIEVISAQVSSD-----LTRRMYMIQVHVN 286 (306)
Q Consensus 238 ~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~-----~~~v~~~i~akv~ 286 (306)
+.|.|..+.+||.|.+|++.|.+.+.+|++...... .+.....|.+++.
T Consensus 306 ~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~ 359 (380)
T TIGR01127 306 VRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETR 359 (380)
T ss_pred EEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeC
Confidence 578899999999999999999999999999876521 2344444666654
No 119
>PRK08198 threonine dehydratase; Provisional
Probab=68.67 E-value=24 Score=34.48 Aligned_cols=50 Identities=12% Similarity=0.222 Sum_probs=39.1
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEee-----CCeEEEEEEEEEc
Q 037241 237 EAHISICSPKKPGMFSTICYVLEKHKIEVISAQVSSD-----LTRRMYMIQVHVN 286 (306)
Q Consensus 237 ~~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~-----~~~v~~~i~akv~ 286 (306)
.+.|.|.-+.+||.|.+|++.|-+.+.+|+..+.... .+.....|.+++.
T Consensus 327 ~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~~ 381 (404)
T PRK08198 327 YLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLETR 381 (404)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEeC
Confidence 3678899999999999999999999999998887642 2344445666654
No 120
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=67.64 E-value=19 Score=29.63 Aligned_cols=37 Identities=19% Similarity=0.343 Sum_probs=33.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCC
Q 037241 239 HISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLT 275 (306)
Q Consensus 239 ~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~ 275 (306)
+|.|..+.+||-|..++.+|.+.|+++-..++.-.++
T Consensus 5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~d 41 (142)
T COG4747 5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGD 41 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccC
Confidence 6899999999999999999999999999999876555
No 121
>PRK08526 threonine dehydratase; Provisional
Probab=65.17 E-value=26 Score=34.51 Aligned_cols=51 Identities=16% Similarity=0.302 Sum_probs=40.3
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCCe-----EEEEEEEEEcCc
Q 037241 238 AHISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLTR-----RMYMIQVHVNGA 288 (306)
Q Consensus 238 ~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~~-----v~~~i~akv~~~ 288 (306)
+.+.|..+.+||.|.+++..|-+.+.+|+.......... +...|.+++++.
T Consensus 327 ~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~~~~~~~~~~~~~~~e~~~~ 382 (403)
T PRK08526 327 MKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFSTKLDYGDAMISITLETKGK 382 (403)
T ss_pred EEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEeccCCCCCccEEEEEEEEeCCH
Confidence 778999999999999999999999999999888653332 444466666644
No 122
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=64.77 E-value=39 Score=24.61 Aligned_cols=36 Identities=11% Similarity=0.154 Sum_probs=26.5
Q ss_pred CCCCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEEEE
Q 037241 245 PKKPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYMIQ 282 (306)
Q Consensus 245 ~~r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~i~ 282 (306)
...+|++.+|+.+|.+.+++|..... ..+.+.+++.
T Consensus 12 ~~~~g~~~~if~~L~~~~I~v~~i~~--s~~~is~~v~ 47 (75)
T cd04912 12 LGAHGFLAKVFEIFAKHGLSVDLIST--SEVSVSLTLD 47 (75)
T ss_pred CCCccHHHHHHHHHHHcCCeEEEEEc--CCcEEEEEEE
Confidence 34689999999999999999987753 3344444443
No 123
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=64.77 E-value=19 Score=25.45 Aligned_cols=36 Identities=8% Similarity=0.075 Sum_probs=28.1
Q ss_pred CCCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEEE
Q 037241 246 KKPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYMI 281 (306)
Q Consensus 246 ~r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~i 281 (306)
+.+|++.+++.+|.+.++.|.-.+.++.+..+.+.+
T Consensus 12 ~~~~~~~~i~~aL~~~~I~v~~i~~g~s~~sis~~v 47 (65)
T cd04918 12 RSSLILERAFHVLYTKGVNVQMISQGASKVNISLIV 47 (65)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecCccceEEEEE
Confidence 457899999999999999998887766655444444
No 124
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=63.87 E-value=31 Score=30.43 Aligned_cols=49 Identities=8% Similarity=0.226 Sum_probs=38.7
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeC----CeEEEEEEEEEc
Q 037241 238 AHISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDL----TRRMYMIQVHVN 286 (306)
Q Consensus 238 ~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~----~~v~~~i~akv~ 286 (306)
+.|.|.-..+||++.+|.++|-+++++|.+.+.-+.. +.-+|.+++++.
T Consensus 96 ~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~ 148 (190)
T PRK11589 96 VWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAH 148 (190)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEE
Confidence 5688889999999999999999999999998877654 334555444544
No 125
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=61.96 E-value=43 Score=23.00 Aligned_cols=27 Identities=19% Similarity=0.156 Sum_probs=22.6
Q ss_pred CCCChHHHHHHHHHhCCCEEEEEEEEe
Q 037241 246 KKPGMFSTICYVLEKHKIEVISAQVSS 272 (306)
Q Consensus 246 ~r~glL~~Il~aLe~l~LdVvsa~is~ 272 (306)
..++++.+|+.+|.+.+++|.-.+.+.
T Consensus 13 ~~~~~~~~i~~~L~~~~i~v~~i~~~~ 39 (66)
T cd04916 13 NTVGVSARATAALAKAGINIRMINQGS 39 (66)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 468999999999999999997766543
No 126
>PF02120 Flg_hook: Flagellar hook-length control protein FliK; InterPro: IPR021136 This entry represents the C-terminal domain of the flagellar hook-length control protein FliK. This entry also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems. During flagellar morphogenesis in Salmonella typhimurium and Escherichia coli, flagellar hook-length control protein (FliK) controls the length of the hook by directly measuring the hook length [, ]. It is considered unlikely that FliK functions as a molecular ruler for determining hook length, but that it is more likely to be employing a novel mechanism. The deduced amino acid sequences of FliK proteins from S. typhimurium and E. coli have molecular masses of 41,748 and 39,246 Da, respectively, and are fairly hydrophilic []. Sequence comparison reveals around 50% identity, with greatest conservation in the C-terminal region, with 71% identity in the last 154 amino acids - mutagenesis of this conserved region completely abolishes motility. The central and C-terminal regions are rich in proline and glutamine respectively; it is thought that they may constitute distinct domains [].; PDB: 2RRL_A.
Probab=61.31 E-value=32 Score=25.47 Aligned_cols=48 Identities=19% Similarity=0.261 Sum_probs=35.6
Q ss_pred cccEEEEEeCCeEEEEEEcCCCC------ChHHHHHHHHHhCCCEEEEEEEEee
Q 037241 226 SSNVVLNICGDEAHISICSPKKP------GMFSTICYVLEKHKIEVISAQVSSD 273 (306)
Q Consensus 226 ~~~V~V~i~g~~~~I~I~c~~r~------glL~~Il~aLe~l~LdVvsa~is~~ 273 (306)
...|.+++.++.+.|.|.+.... .-+..+-++|...|+.|.+.++...
T Consensus 26 ~v~v~l~~~~~~l~v~~~~~~~~~~~~L~~~~~~L~~~L~~~G~~~~~~~v~~~ 79 (85)
T PF02120_consen 26 SVEVKLRLQGGNLSVQFTAENPETKELLRQNLPELKERLQAQGLEVVNLSVSQG 79 (85)
T ss_dssp -EEEEEEEETTEEEEEEE--SSHHHHHHHHTHHHHHHHHHTTT-EEEEEEEESS
T ss_pred cEEEEEEEeCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEEEC
Confidence 34677888899999999987743 3467789999999999999888653
No 127
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=60.42 E-value=39 Score=24.46 Aligned_cols=28 Identities=29% Similarity=0.338 Sum_probs=23.3
Q ss_pred CCCCChHHHHHHHHHhCCCEEEEEEEEe
Q 037241 245 PKKPGMFSTICYVLEKHKIEVISAQVSS 272 (306)
Q Consensus 245 ~~r~glL~~Il~aLe~l~LdVvsa~is~ 272 (306)
...++++.+++++|.+.++.|.-.+.+.
T Consensus 12 ~~~~~~~~~i~~~L~~~~I~v~~i~~~~ 39 (80)
T cd04921 12 VGVPGIAARIFSALARAGINVILISQAS 39 (80)
T ss_pred CCCccHHHHHHHHHHHCCCcEEEEEecC
Confidence 3468899999999999999997776553
No 128
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=60.02 E-value=32 Score=28.83 Aligned_cols=52 Identities=13% Similarity=0.257 Sum_probs=41.7
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEE-eeCCeEEEEEEEEEcC
Q 037241 236 DEAHISICSPKKPGMFSTICYVLEKHKIEVISAQVS-SDLTRRMYMIQVHVNG 287 (306)
Q Consensus 236 ~~~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is-~~~~~v~~~i~akv~~ 287 (306)
..+.+.+..+.|-|.|+++|+++-..++.|++.+=+ ..+++.-.+|......
T Consensus 71 ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~ss 123 (150)
T COG4492 71 RIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDTSS 123 (150)
T ss_pred eEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEchh
Confidence 456678888999999999999999999999998765 4677766666665543
No 129
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=59.84 E-value=46 Score=24.53 Aligned_cols=32 Identities=19% Similarity=0.280 Sum_probs=25.5
Q ss_pred EEEEE---cCCCCChHHHHHHHHHhCCCEEEEEEE
Q 037241 239 HISIC---SPKKPGMFSTICYVLEKHKIEVISAQV 270 (306)
Q Consensus 239 ~I~I~---c~~r~glL~~Il~aLe~l~LdVvsa~i 270 (306)
.|.|. .+..+|++.+|+.+|.++++.|-....
T Consensus 3 ~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI~~ 37 (75)
T cd04932 3 LVTLKSPNMLHAQGFLAKVFGILAKHNISVDLITT 37 (75)
T ss_pred EEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEee
Confidence 45553 345799999999999999999888864
No 130
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=59.31 E-value=55 Score=24.53 Aligned_cols=32 Identities=19% Similarity=0.241 Sum_probs=25.6
Q ss_pred EEEEEc---CCCCChHHHHHHHHHhCCCEEEEEEE
Q 037241 239 HISICS---PKKPGMFSTICYVLEKHKIEVISAQV 270 (306)
Q Consensus 239 ~I~I~c---~~r~glL~~Il~aLe~l~LdVvsa~i 270 (306)
+|.|.. +..+|.+.+|+++|++.+++|-....
T Consensus 3 ~i~i~~~~~~~~~g~~a~IF~~La~~~InVDmI~q 37 (78)
T cd04933 3 MLDITSTRMLGQYGFLAKVFSIFETLGISVDVVAT 37 (78)
T ss_pred EEEEEcCCCCCccCHHHHHHHHHHHcCCcEEEEEe
Confidence 455554 35689999999999999999888854
No 131
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=57.95 E-value=57 Score=23.94 Aligned_cols=32 Identities=25% Similarity=0.307 Sum_probs=25.4
Q ss_pred EEEEEcC---CCCChHHHHHHHHHhCCCEEEEEEE
Q 037241 239 HISICSP---KKPGMFSTICYVLEKHKIEVISAQV 270 (306)
Q Consensus 239 ~I~I~c~---~r~glL~~Il~aLe~l~LdVvsa~i 270 (306)
.|.|... ..+|++.+|+++|.++++.|-....
T Consensus 3 ~I~i~~~~m~~~~g~~~~If~~la~~~I~vd~I~~ 37 (73)
T cd04934 3 VINIHSNKKSLSHGFLARIFAILDKYRLSVDLIST 37 (73)
T ss_pred EEEEEcccCccccCHHHHHHHHHHHcCCcEEEEEe
Confidence 3555544 3689999999999999998888864
No 132
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=57.51 E-value=12 Score=26.73 Aligned_cols=32 Identities=28% Similarity=0.475 Sum_probs=25.5
Q ss_pred EEEEEEcC----CCCChHHHHHHHHHhCCCEEEEEE
Q 037241 238 AHISICSP----KKPGMFSTICYVLEKHKIEVISAQ 269 (306)
Q Consensus 238 ~~I~I~c~----~r~glL~~Il~aLe~l~LdVvsa~ 269 (306)
..|.|..+ ..+|++.+|+.+|-+.|+.|...+
T Consensus 7 ~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is 42 (65)
T PF13840_consen 7 AKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS 42 (65)
T ss_dssp EEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred EEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence 45666554 378999999999999999998887
No 133
>PRK03094 hypothetical protein; Provisional
Probab=57.44 E-value=28 Score=26.50 Aligned_cols=20 Identities=15% Similarity=0.290 Sum_probs=17.4
Q ss_pred hHHHHHHHHHhCCCEEEEEE
Q 037241 250 MFSTICYVLEKHKIEVISAQ 269 (306)
Q Consensus 250 lL~~Il~aLe~l~LdVvsa~ 269 (306)
-|+.|-++|++.|.+|+...
T Consensus 9 ~Ls~i~~~L~~~GYeVv~l~ 28 (80)
T PRK03094 9 SLTDVQQALKQKGYEVVQLR 28 (80)
T ss_pred CcHHHHHHHHHCCCEEEecC
Confidence 47899999999999998664
No 134
>PRK11899 prephenate dehydratase; Provisional
Probab=57.43 E-value=54 Score=30.74 Aligned_cols=51 Identities=4% Similarity=-0.033 Sum_probs=40.5
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCCe-EEEEEEEEEcCc
Q 037241 238 AHISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLTR-RMYMIQVHVNGA 288 (306)
Q Consensus 238 ~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~~-v~~~i~akv~~~ 288 (306)
..|-+..+.+||.|.+||.+|-..||+.....+-...+. --|.|.+.+++.
T Consensus 195 tsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg~ 246 (279)
T PRK11899 195 TTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEGH 246 (279)
T ss_pred EEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEECC
Confidence 445555678999999999999999999999998876543 556677787764
No 135
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=56.29 E-value=50 Score=38.20 Aligned_cols=53 Identities=17% Similarity=0.178 Sum_probs=40.2
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEee---CCe--EEEEEEEEEcCc
Q 037241 236 DEAHISICSPKKPGMFSTICYVLEKHKIEVISAQVSSD---LTR--RMYMIQVHVNGA 288 (306)
Q Consensus 236 ~~~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~---~~~--v~~~i~akv~~~ 288 (306)
+.+.++|....++..|++||-+||++||.|+.-.--.+ ++. .+|-|.......
T Consensus 488 ~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~~ 545 (1528)
T PF05088_consen 488 GRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPDG 545 (1528)
T ss_pred CeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCCC
Confidence 35789999999999999999999999999998764432 233 344476666544
No 136
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=55.34 E-value=64 Score=22.00 Aligned_cols=27 Identities=30% Similarity=0.335 Sum_probs=22.3
Q ss_pred CCCChHHHHHHHHHhCCCEEEEEEEEe
Q 037241 246 KKPGMFSTICYVLEKHKIEVISAQVSS 272 (306)
Q Consensus 246 ~r~glL~~Il~aLe~l~LdVvsa~is~ 272 (306)
..++++.+++.+|.+.++.|.-.+.+.
T Consensus 13 ~~~~~~~~i~~~L~~~~I~v~~i~q~~ 39 (66)
T cd04924 13 GTPGVAGRVFGALGKAGINVIMISQGS 39 (66)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 468999999999999999997665543
No 137
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=55.10 E-value=67 Score=23.61 Aligned_cols=26 Identities=15% Similarity=0.235 Sum_probs=22.6
Q ss_pred CCCCChHHHHHHHHHhCCCEEEEEEE
Q 037241 245 PKKPGMFSTICYVLEKHKIEVISAQV 270 (306)
Q Consensus 245 ~~r~glL~~Il~aLe~l~LdVvsa~i 270 (306)
+..+|++.+|+++|+++++.|-....
T Consensus 12 ~~~~g~~~~IF~~La~~~I~vDmI~~ 37 (75)
T cd04935 12 WQQVGFLADVFAPFKKHGVSVDLVST 37 (75)
T ss_pred CCccCHHHHHHHHHHHcCCcEEEEEe
Confidence 45689999999999999999988864
No 138
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=54.52 E-value=30 Score=24.66 Aligned_cols=35 Identities=23% Similarity=0.297 Sum_probs=26.9
Q ss_pred CCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEEE
Q 037241 247 KPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYMI 281 (306)
Q Consensus 247 r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~i 281 (306)
++|++.+++++|.+.+++|...+.+..+..+.+.|
T Consensus 14 ~~gv~~ki~~~L~~~~I~v~~i~~~~s~~~is~~V 48 (66)
T cd04915 14 TPGVLARGLAALAEAGIEPIAAHQSMRNVDVQFVV 48 (66)
T ss_pred cchHHHHHHHHHHHCCCCEEEEEecCCeeEEEEEE
Confidence 57899999999999999998877766544443334
No 139
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=50.26 E-value=45 Score=28.82 Aligned_cols=61 Identities=21% Similarity=0.322 Sum_probs=44.2
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEEEEEEEcCccccccCCCChHHHHHhh
Q 037241 239 HISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYMIQVHVNGASDQFSEALPVEEMYKQA 305 (306)
Q Consensus 239 ~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~i~akv~~~~~~~~~~~~~ee~~k~a 305 (306)
.+.+...+.+|.|.++...+-..|+++-+..+...++--+.-++..+.+ . -..+|+++||-
T Consensus 6 ilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g-~-----~~~~EQi~kQL 66 (163)
T COG0440 6 ILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSG-D-----EQVLEQIIKQL 66 (163)
T ss_pred EEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcC-C-----cchHHHHHHHH
Confidence 4566677899999999999999999999888886554433334444443 1 25678888873
No 140
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=50.09 E-value=71 Score=20.97 Aligned_cols=27 Identities=33% Similarity=0.399 Sum_probs=23.2
Q ss_pred CCCCChHHHHHHHHHhCCCEEEEEEEE
Q 037241 245 PKKPGMFSTICYVLEKHKIEVISAQVS 271 (306)
Q Consensus 245 ~~r~glL~~Il~aLe~l~LdVvsa~is 271 (306)
+..+|.+.+|+.+|.+.++.|...+.+
T Consensus 9 ~~~~~~~~~i~~~L~~~~i~i~~i~~~ 35 (61)
T cd04891 9 PDKPGVAAKIFSALAEAGINVDMIVQS 35 (61)
T ss_pred CCCCcHHHHHHHHHHHcCCcEEEEEEc
Confidence 567899999999999999999776654
No 141
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=49.24 E-value=37 Score=25.22 Aligned_cols=27 Identities=26% Similarity=0.242 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037241 134 IVDEAVSYIKTLQQTLRKLQKQKLERL 160 (306)
Q Consensus 134 iL~~ai~YIk~Lq~~~~~L~~~~~~~~ 160 (306)
-+..||+-|..|+.++++|+.+...+.
T Consensus 12 ki~~aveti~~Lq~e~eeLke~n~~L~ 38 (72)
T PF06005_consen 12 KIQQAVETIALLQMENEELKEKNNELK 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 367899999999999999999866553
No 142
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.74 E-value=33 Score=25.41 Aligned_cols=28 Identities=25% Similarity=0.304 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 037241 134 IVDEAVSYIKTLQQTLRKLQKQKLERLQ 161 (306)
Q Consensus 134 iL~~ai~YIk~Lq~~~~~L~~~~~~~~~ 161 (306)
-+..||+-|.-||-.+++|+.++..|..
T Consensus 12 KiqqAvdTI~LLQmEieELKEknn~l~~ 39 (79)
T COG3074 12 KVQQAIDTITLLQMEIEELKEKNNSLSQ 39 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhHH
Confidence 3678999999999999999998886654
No 143
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=48.43 E-value=89 Score=21.57 Aligned_cols=27 Identities=30% Similarity=0.357 Sum_probs=22.6
Q ss_pred cCCCCChHHHHHHHHHhCCCEEEEEEE
Q 037241 244 SPKKPGMFSTICYVLEKHKIEVISAQV 270 (306)
Q Consensus 244 c~~r~glL~~Il~aLe~l~LdVvsa~i 270 (306)
.+..+|.+.+|+.+|.+.++.|.....
T Consensus 9 ~~~~~g~~~~i~~~L~~~~I~i~~i~~ 35 (75)
T cd04913 9 VPDKPGVAAKIFGALAEANINVDMIVQ 35 (75)
T ss_pred CCCCCcHHHHHHHHHHHcCCeEEEEEe
Confidence 356799999999999999999975543
No 144
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=48.15 E-value=5 Score=41.89 Aligned_cols=61 Identities=21% Similarity=0.206 Sum_probs=51.5
Q ss_pred chhhhccHHHHHHHHHHHHHHHHHHhcCCCC----CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037241 95 SEHEIHIWTERERRKKMRNMFANLHSLLPQL----PPKADKSSIVDEAVSYIKTLQQTLRKLQKQKLE 158 (306)
Q Consensus 95 ~~~~~h~~~Er~RR~~~~~~~~~Lr~lvP~~----~~k~~k~~iL~~ai~YIk~Lq~~~~~L~~~~~~ 158 (306)
-.+..|+..+|+||-.+.+.|..|-.|.|.+ ..+.++.+||. +.|+.+++.-+.+.+..+.
T Consensus 786 ~v~a~sih~lrr~~~~~~dq~~sL~alrp~v~~~~~ql~S~tS~L~---dp~~~~eq~ska~~e~~~~ 850 (856)
T KOG3582|consen 786 MVSAGSIHALRRTRLNWLDQFCSLPALRPQVLLNLRQLLSSTSILT---DPIKQPEQASKAVTEKIEG 850 (856)
T ss_pred eeecchHHHHHHHHHHHhhccccHHHHHHHHHhhHHHhhhhhhccc---CcccchHHHHHHHHhhhhh
Confidence 3567899999999999999999999999975 26788999999 8889999888887776543
No 145
>COG1259 Uncharacterized conserved protein [Function unknown]
Probab=47.23 E-value=73 Score=27.22 Aligned_cols=48 Identities=13% Similarity=0.222 Sum_probs=36.8
Q ss_pred CCCCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEE-EEEEEcCccccc
Q 037241 245 PKKPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYM-IQVHVNGASDQF 292 (306)
Q Consensus 245 ~~r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~-i~akv~~~~~~~ 292 (306)
+.||-...-+.++|++++..|..+.|...-+.++|+ |..+-.+..-++
T Consensus 55 p~RP~tHdll~~i~~~l~~~v~kVvI~d~~d~tyyA~L~~~~~~~~~~i 103 (151)
T COG1259 55 PPRPLTHDLLVEIFEELGARVEKVVIDDLIDNTYYATLILEQDDGKIQI 103 (151)
T ss_pred CCCCcHHHHHHHHHHHhCCcEEEEEEEEeccCeEEEEEEEEcCCceEEE
Confidence 346666666779999999999999999877777777 877766654444
No 146
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=47.02 E-value=86 Score=21.00 Aligned_cols=25 Identities=16% Similarity=0.283 Sum_probs=22.0
Q ss_pred CCCChHHHHHHHHHhCCCEEEEEEE
Q 037241 246 KKPGMFSTICYVLEKHKIEVISAQV 270 (306)
Q Consensus 246 ~r~glL~~Il~aLe~l~LdVvsa~i 270 (306)
..++.+.+|+.+|.+.++.|...+.
T Consensus 12 ~~~~~~~~i~~~L~~~~i~v~~i~~ 36 (63)
T cd04936 12 SHPGVAAKMFEALAEAGINIEMIST 36 (63)
T ss_pred CCccHHHHHHHHHHHCCCcEEEEEc
Confidence 4689999999999999999987764
No 147
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=46.26 E-value=77 Score=30.81 Aligned_cols=41 Identities=15% Similarity=0.215 Sum_probs=33.1
Q ss_pred EEEeCCeEEEEEE---cCCCCChHHHHHHHHHhCCCEEEEEEEE
Q 037241 231 LNICGDEAHISIC---SPKKPGMFSTICYVLEKHKIEVISAQVS 271 (306)
Q Consensus 231 V~i~g~~~~I~I~---c~~r~glL~~Il~aLe~l~LdVvsa~is 271 (306)
+.+..+-+.|.|. ...++|.+.+|+.+|.++++.|...+.+
T Consensus 254 I~~~~~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~ 297 (401)
T TIGR00656 254 IALRKNVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQT 297 (401)
T ss_pred EEEECCEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcC
Confidence 4455667788887 4568999999999999999999877654
No 148
>PF02577 DNase-RNase: Bifunctional nuclease; InterPro: IPR003729 This entry describes proteins of unknown function. The structure has been determined for one member of this group, the hypothetical protein TM0160 from Thermotoga maritima, which was found to consist of a duplication of two beta(3)-alpha(2) structural repeats, forming a single barrel-like beta-sheet [].; PDB: 1SJ5_A 1VJL_A.
Probab=45.52 E-value=85 Score=25.84 Aligned_cols=57 Identities=14% Similarity=0.127 Sum_probs=35.5
Q ss_pred CCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEE-EEEEEcCccccccCCCChHHHHHhh
Q 037241 247 KPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYM-IQVHVNGASDQFSEALPVEEMYKQA 305 (306)
Q Consensus 247 r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~-i~akv~~~~~~~~~~~~~ee~~k~a 305 (306)
||-..--+.+.|+.+|..|..+.|....+.+||. |...-.+....+ ...+-|.+-+|
T Consensus 51 RP~thdLl~~~l~~lg~~v~~V~I~~~~dg~f~A~L~l~~~~~~~~i--d~RpSDAiaLA 108 (135)
T PF02577_consen 51 RPLTHDLLSDLLEALGAEVERVVIDDLEDGVFYARLVLRQGGEEIEI--DARPSDAIALA 108 (135)
T ss_dssp S--HHHHHHHHHHHTTEEEEEEEEEEEETTEEEEEEEEEETTTEEEE--EE-HHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCCEEEEEEEEEEECCEEEEEEEEecCCEEEEE--ECcHhHHHHHH
Confidence 4444344557889999999999999988877777 777643321111 24455555544
No 149
>PRK06291 aspartate kinase; Provisional
Probab=44.55 E-value=90 Score=31.25 Aligned_cols=50 Identities=20% Similarity=0.254 Sum_probs=35.1
Q ss_pred EEeCCeEEEEEEcC---CCCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEEE
Q 037241 232 NICGDEAHISICSP---KKPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYMI 281 (306)
Q Consensus 232 ~i~g~~~~I~I~c~---~r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~i 281 (306)
....+-+.|.|... ..+|++.+|+.+|.++++.|...+.++....+.++|
T Consensus 316 t~~~~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse~sIsf~V 368 (465)
T PRK06291 316 TLIKNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSESNISLVV 368 (465)
T ss_pred EeeCCEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCCceEEEEE
Confidence 34455567888754 468999999999999999998776544443333333
No 150
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=44.47 E-value=26 Score=21.80 Aligned_cols=18 Identities=22% Similarity=0.517 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 037241 103 TERERRKKMRNMFANLHS 120 (306)
Q Consensus 103 ~Er~RR~~~~~~~~~Lr~ 120 (306)
.=|+||++++.++..||.
T Consensus 12 qLrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 12 QLRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 337889999999999985
No 151
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=43.91 E-value=84 Score=27.02 Aligned_cols=49 Identities=22% Similarity=0.192 Sum_probs=37.7
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEee---CCeEEEEEEEEEc
Q 037241 238 AHISICSPKKPGMFSTICYVLEKHKIEVISAQVSSD---LTRRMYMIQVHVN 286 (306)
Q Consensus 238 ~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~---~~~v~~~i~akv~ 286 (306)
+.+.|..+.+||.|+++|+=|-+.|.+|++..-+.. ++++-.-|..++.
T Consensus 6 itldIEL~D~PGQLl~vLqPls~~g~NiItIiH~r~kk~g~r~pV~i~~~~d 57 (170)
T COG2061 6 ITLDIELKDKPGQLLKVLQPLSKTGANIITIIHSRDKKYGPRVPVQIVFEGD 57 (170)
T ss_pred EEEEEEecCCCcchhhhhcchhhcCccEEEEEeecCcccCCceeEEEEEEec
Confidence 356778889999999999999999999999887764 4454444555544
No 152
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=43.78 E-value=45 Score=25.30 Aligned_cols=29 Identities=24% Similarity=0.284 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 037241 134 IVDEAVSYIKTLQQTLRKLQKQKLERLQG 162 (306)
Q Consensus 134 iL~~ai~YIk~Lq~~~~~L~~~~~~~~~~ 162 (306)
-+..||+-|.-||-.+++|+.+...+...
T Consensus 12 KIqqAvdtI~LLqmEieELKekn~~L~~e 40 (79)
T PRK15422 12 KVQQAIDTITLLQMEIEELKEKNNSLSQE 40 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999998877654
No 153
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=42.25 E-value=1.4e+02 Score=27.25 Aligned_cols=38 Identities=5% Similarity=0.005 Sum_probs=31.3
Q ss_pred eEEEEEEcCCCCC--hHHHHHHHHHhCCCEEEEEEEEeeC
Q 037241 237 EAHISICSPKKPG--MFSTICYVLEKHKIEVISAQVSSDL 274 (306)
Q Consensus 237 ~~~I~I~c~~r~g--lL~~Il~aLe~l~LdVvsa~is~~~ 274 (306)
.+.+.|.|...+. +...+++.|++.++.+.+.++...+
T Consensus 142 ~~~~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~~~ 181 (225)
T PRK15385 142 RYILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPAQ 181 (225)
T ss_pred EEEEEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeeecC
Confidence 4578899988664 5888999999999999999996543
No 154
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=42.08 E-value=1e+02 Score=20.56 Aligned_cols=25 Identities=16% Similarity=0.291 Sum_probs=21.9
Q ss_pred CCCChHHHHHHHHHhCCCEEEEEEE
Q 037241 246 KKPGMFSTICYVLEKHKIEVISAQV 270 (306)
Q Consensus 246 ~r~glL~~Il~aLe~l~LdVvsa~i 270 (306)
..++.+.+|+.+|.+.++.|...+.
T Consensus 12 ~~~~~~~~i~~~L~~~~i~v~~i~~ 36 (63)
T cd04923 12 SHPGVAAKMFKALAEAGINIEMIST 36 (63)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEc
Confidence 4689999999999999999988764
No 155
>smart00338 BRLZ basic region leucin zipper.
Probab=41.87 E-value=38 Score=24.10 Aligned_cols=23 Identities=13% Similarity=0.238 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Q 037241 140 SYIKTLQQTLRKLQKQKLERLQG 162 (306)
Q Consensus 140 ~YIk~Lq~~~~~L~~~~~~~~~~ 162 (306)
.||..|+.+++.|+.+...|...
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~ 48 (65)
T smart00338 26 AEIEELERKVEQLEAENERLKKE 48 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 58888888888888888777543
No 156
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=40.46 E-value=78 Score=27.69 Aligned_cols=50 Identities=18% Similarity=0.284 Sum_probs=41.0
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEEEEEEEcCc
Q 037241 239 HISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYMIQVHVNGA 288 (306)
Q Consensus 239 ~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~i~akv~~~ 288 (306)
-|.|....++|.|.+|.-.+-++|.+++.++--...+.-.-.|+.++++.
T Consensus 4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiEgi 53 (218)
T COG1707 4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIEGI 53 (218)
T ss_pred eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEeeCC
Confidence 36788889999999999999999999999998776665555566677654
No 157
>PRK11898 prephenate dehydratase; Provisional
Probab=40.22 E-value=91 Score=29.15 Aligned_cols=51 Identities=16% Similarity=0.260 Sum_probs=37.3
Q ss_pred EEEEEEcCC-CCChHHHHHHHHHhCCCEEEEEEEEeeCCe-EEEEEEEEEcCc
Q 037241 238 AHISICSPK-KPGMFSTICYVLEKHKIEVISAQVSSDLTR-RMYMIQVHVNGA 288 (306)
Q Consensus 238 ~~I~I~c~~-r~glL~~Il~aLe~l~LdVvsa~is~~~~~-v~~~i~akv~~~ 288 (306)
..|-+..+. ++|.|.++|.+|..+++++++..+-...++ --|.|.+.+++.
T Consensus 197 tslif~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~eg~ 249 (283)
T PRK11898 197 TSLVLTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVEGH 249 (283)
T ss_pred EEEEEEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEEcc
Confidence 345555655 599999999999999999999998765443 235566666543
No 158
>PRK08210 aspartate kinase I; Reviewed
Probab=39.42 E-value=1.1e+02 Score=29.98 Aligned_cols=40 Identities=10% Similarity=0.077 Sum_probs=32.4
Q ss_pred EEeCCeEEEEEEcCCC-CChHHHHHHHHHhCCCEEEEEEEE
Q 037241 232 NICGDEAHISICSPKK-PGMFSTICYVLEKHKIEVISAQVS 271 (306)
Q Consensus 232 ~i~g~~~~I~I~c~~r-~glL~~Il~aLe~l~LdVvsa~is 271 (306)
....+.++|+|..... +|.+.+|+.+|.++++.|...+.+
T Consensus 266 t~~~~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~ 306 (403)
T PRK08210 266 AHVSNVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIF 306 (403)
T ss_pred EEcCCcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEec
Confidence 3456677888876554 999999999999999999888654
No 159
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=39.13 E-value=1.2e+02 Score=28.53 Aligned_cols=54 Identities=20% Similarity=0.326 Sum_probs=41.5
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCC-eEEEEEEEEEcCccc
Q 037241 237 EAHISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLT-RRMYMIQVHVNGASD 290 (306)
Q Consensus 237 ~~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~-~v~~~i~akv~~~~~ 290 (306)
...|-+..+.+||.|.++|.+|-..||+.....+-.... .--|.|.+.+.+...
T Consensus 194 kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~eg~~~ 248 (279)
T COG0077 194 KTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIEGHID 248 (279)
T ss_pred eEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEecCcC
Confidence 345566667999999999999999999999998876553 445667777776544
No 160
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=38.96 E-value=47 Score=23.56 Aligned_cols=21 Identities=24% Similarity=0.458 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 037241 140 SYIKTLQQTLRKLQKQKLERL 160 (306)
Q Consensus 140 ~YIk~Lq~~~~~L~~~~~~~~ 160 (306)
.||..|+.++..|+.+...|.
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~ 46 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELK 46 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555443
No 161
>PLN02705 beta-amylase
Probab=38.13 E-value=1.1e+02 Score=31.90 Aligned_cols=29 Identities=34% Similarity=0.390 Sum_probs=23.3
Q ss_pred CcchhhhccHHHHHHHHHHHHHHHHHHhc
Q 037241 93 GESEHEIHIWTERERRKKMRNMFANLHSL 121 (306)
Q Consensus 93 ~~~~~~~h~~~Er~RR~~~~~~~~~Lr~l 121 (306)
++..|+.....||+||.--...|.-||..
T Consensus 81 ~~~e~e~~~~rer~rrai~~ki~aglr~~ 109 (681)
T PLN02705 81 REKEKERTKLRERHRRAITSRMLAGLRQY 109 (681)
T ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHhc
Confidence 45678889999999998777777777764
No 162
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=37.99 E-value=1.2e+02 Score=23.13 Aligned_cols=38 Identities=8% Similarity=0.212 Sum_probs=33.1
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCC
Q 037241 238 AHISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLT 275 (306)
Q Consensus 238 ~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~ 275 (306)
.++.|....+|+.|.+||.+.+-.|+.|...+.+...+
T Consensus 4 yqldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~d 41 (86)
T COG3978 4 YQLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVD 41 (86)
T ss_pred EEEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccc
Confidence 35777888899999999999999999999999987533
No 163
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=36.62 E-value=87 Score=31.61 Aligned_cols=51 Identities=12% Similarity=0.105 Sum_probs=38.4
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCCeEE--EEEEEEEcCc
Q 037241 238 AHISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLTRRM--YMIQVHVNGA 288 (306)
Q Consensus 238 ~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~--~~i~akv~~~ 288 (306)
..|-+..+.++|.|.+||.+|+.+|+++.+..+-....... |.|.+.++..
T Consensus 32 tSLIFsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~Eg~ 84 (464)
T TIGR01270 32 LSIIFSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDVELF 84 (464)
T ss_pred EEEEEECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEEEcC
Confidence 34555567789999999999999999999999876554332 5566666543
No 164
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=36.47 E-value=98 Score=31.00 Aligned_cols=50 Identities=10% Similarity=0.215 Sum_probs=37.6
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCCe-EEEEEEEEEcC
Q 037241 238 AHISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLTR-RMYMIQVHVNG 287 (306)
Q Consensus 238 ~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~~-v~~~i~akv~~ 287 (306)
..|-+..+.++|.|.+||.+|..+++++.+..+-..... --|.|.+.+++
T Consensus 17 TSLiFsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~eg 67 (436)
T TIGR01268 17 TSLIFSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFDE 67 (436)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEec
Confidence 345555677899999999999999999999998764332 23556666654
No 165
>PHA01753 Holliday junction resolvase
Probab=35.63 E-value=96 Score=25.49 Aligned_cols=39 Identities=18% Similarity=0.239 Sum_probs=29.6
Q ss_pred HHHHHHHhCCCEEEEEEEEee-----------CCeEEEEEEEEEcCcccc
Q 037241 253 TICYVLEKHKIEVISAQVSSD-----------LTRRMYMIQVHVNGASDQ 291 (306)
Q Consensus 253 ~Il~aLe~l~LdVvsa~is~~-----------~~~v~~~i~akv~~~~~~ 291 (306)
.+..-|++.|+.|+..+.++. ++.+++.|.+|.+.....
T Consensus 13 ~a~~~L~~~G~~il~rn~~~~~~~GEiDIIA~~~~~lvfVEVKtR~~~~~ 62 (121)
T PHA01753 13 KTLEILESNGFKALRIPVSGTGKQALPDIIATKNNTIYPIEVKSTSKDVV 62 (121)
T ss_pred HHHHHHHHCCCEEEEeccccCCCCCCccEEEeeCCEEEEEEEEeCCCCcE
Confidence 577889999999999999882 255777788887654433
No 166
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=35.51 E-value=1.5e+02 Score=29.06 Aligned_cols=51 Identities=12% Similarity=0.167 Sum_probs=39.8
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCCe-EEEEEEEEEcCc
Q 037241 238 AHISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLTR-RMYMIQVHVNGA 288 (306)
Q Consensus 238 ~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~~-v~~~i~akv~~~ 288 (306)
..|-+..+++||.|.++|.+|-..|++.....+-...+. --|.|.+.+++.
T Consensus 298 tsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~eg~ 349 (386)
T PRK10622 298 TTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQAN 349 (386)
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEeCC
Confidence 334455578999999999999999999999998865544 456677787764
No 167
>PRK08818 prephenate dehydrogenase; Provisional
Probab=35.25 E-value=1.3e+02 Score=29.40 Aligned_cols=48 Identities=21% Similarity=0.398 Sum_probs=35.6
Q ss_pred EEEEEcC-CCCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEEEEEEEcC
Q 037241 239 HISICSP-KKPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYMIQVHVNG 287 (306)
Q Consensus 239 ~I~I~c~-~r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~i~akv~~ 287 (306)
.|.+..+ .+||.|.+|+.+|-..++++.+..+......... |...+..
T Consensus 297 ~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~~r~~~y~-f~i~~~~ 345 (370)
T PRK08818 297 TLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSRTPAGELH-FRIGFEP 345 (370)
T ss_pred EEEEECCCCCCChHHHHHHHHHHcCcccceEEEecccCceEE-EEEEEec
Confidence 3445556 8999999999999999999999999554443333 6656554
No 168
>PLN02317 arogenate dehydratase
Probab=35.06 E-value=1.7e+02 Score=28.82 Aligned_cols=39 Identities=15% Similarity=0.231 Sum_probs=31.4
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCCe
Q 037241 238 AHISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLTR 276 (306)
Q Consensus 238 ~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~~ 276 (306)
..|-+..+.++|.|.++|.+|...++++....+-.....
T Consensus 284 TSivfsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~ 322 (382)
T PLN02317 284 TSIVFSLEEGPGVLFKALAVFALRDINLTKIESRPQRKR 322 (382)
T ss_pred EEEEEEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCC
Confidence 345555567899999999999999999999998765443
No 169
>PF13224 DUF4032: Domain of unknown function (DUF4032)
Probab=34.45 E-value=72 Score=27.64 Aligned_cols=40 Identities=18% Similarity=0.106 Sum_probs=34.5
Q ss_pred HHHHHHHHHhCCCEEEEEEEEeeCCeEEEEEEEEEcCccc
Q 037241 251 FSTICYVLEKHKIEVISAQVSSDLTRRMYMIQVHVNGASD 290 (306)
Q Consensus 251 L~~Il~aLe~l~LdVvsa~is~~~~~v~~~i~akv~~~~~ 290 (306)
...=++-|.+||+||--..+.+..+..-..|+.+|.+.+.
T Consensus 21 i~~ri~rLN~LGFdV~El~~~~~~~g~~~~i~p~Vvd~gh 60 (165)
T PF13224_consen 21 IEERIRRLNELGFDVGELEITTDDDGTRLRIQPKVVDAGH 60 (165)
T ss_pred HHHHHHHHHhcCCceeeeEeEEcCCCCEEEEEeeEeCCcH
Confidence 4466889999999999999999998888889999987653
No 170
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=33.54 E-value=1.7e+02 Score=28.84 Aligned_cols=50 Identities=10% Similarity=0.153 Sum_probs=35.5
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeC--CeEEEEEEEEEcC
Q 037241 238 AHISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDL--TRRMYMIQVHVNG 287 (306)
Q Consensus 238 ~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~--~~v~~~i~akv~~ 287 (306)
+.+.+.-+.+||-|.++++.+-..+-+|+..+.-... +.....|..++.+
T Consensus 326 ~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~~~~~~~~~~v~v~iE~~~ 377 (409)
T TIGR02079 326 HYFIVRFPQRPGALREFLNDVLGPNDDITRFEYTKKSNRETGPALIGIELND 377 (409)
T ss_pred EEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeecCCCCeEEEEEEEEeCC
Confidence 7889999999999999999776676688877765321 2233335556554
No 171
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=33.45 E-value=99 Score=22.24 Aligned_cols=29 Identities=28% Similarity=0.287 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037241 132 SSIVDEAVSYIKTLQQTLRKLQKQKLERL 160 (306)
Q Consensus 132 ~~iL~~ai~YIk~Lq~~~~~L~~~~~~~~ 160 (306)
.+-|.+|=...+.|+++++.|+.+++++.
T Consensus 31 e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 31 ESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46699999999999999999999998764
No 172
>PRK06291 aspartate kinase; Provisional
Probab=32.48 E-value=1.8e+02 Score=29.07 Aligned_cols=51 Identities=14% Similarity=0.227 Sum_probs=37.7
Q ss_pred EEEeCCeEEEEEEcC---CCCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEEE
Q 037241 231 LNICGDEAHISICSP---KKPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYMI 281 (306)
Q Consensus 231 V~i~g~~~~I~I~c~---~r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~i 281 (306)
|++..+-+.|.|... .++|++.+++.+|.+.+++|+-.+.++.+..+.+.|
T Consensus 392 i~~~~~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~isqgsSe~~Is~vV 445 (465)
T PRK06291 392 VTFDKDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMISQGSSEVNISFVV 445 (465)
T ss_pred eEEeCCEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEEeccccCeEEEEE
Confidence 445555567777754 478999999999999999998777666555554444
No 173
>PRK09034 aspartate kinase; Reviewed
Probab=32.05 E-value=1.7e+02 Score=29.33 Aligned_cols=44 Identities=23% Similarity=0.220 Sum_probs=32.8
Q ss_pred EEEeCCeEEEEEEc---CCCCChHHHHHHHHHhCCCEEEEEEEEeeC
Q 037241 231 LNICGDEAHISICS---PKKPGMFSTICYVLEKHKIEVISAQVSSDL 274 (306)
Q Consensus 231 V~i~g~~~~I~I~c---~~r~glL~~Il~aLe~l~LdVvsa~is~~~ 274 (306)
|.+..+-+.|.|.. ...+|++.+|+.+|.+.+++|.-.+.++.+
T Consensus 379 I~~~~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~Se 425 (454)
T PRK09034 379 LEIEHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGSSE 425 (454)
T ss_pred EEEeCCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCCc
Confidence 44555666788753 357899999999999999999877654433
No 174
>cd04910 ACT_AK-Ectoine_1 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase
Probab=31.13 E-value=2.2e+02 Score=21.02 Aligned_cols=37 Identities=14% Similarity=0.201 Sum_probs=29.3
Q ss_pred CCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEEEEEEE
Q 037241 247 KPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYMIQVHV 285 (306)
Q Consensus 247 r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~i~akv 285 (306)
..|....||++|.++++.++.- .++.+.+-|.|....
T Consensus 14 ~~g~d~~i~~~l~~~~v~ii~K--~~nANtit~yl~~~~ 50 (71)
T cd04910 14 EVGYDLEILELLQRFKVSIIAK--DTNANTITHYLAGSL 50 (71)
T ss_pred ChhHHHHHHHHHHHcCCeEEEE--ecCCCeEEEEEEcCH
Confidence 4678999999999999999998 456677766665543
No 175
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=30.86 E-value=2.3e+02 Score=27.93 Aligned_cols=41 Identities=22% Similarity=0.321 Sum_probs=31.0
Q ss_pred EEeCCeEEEEEEcCC-C-CChHHHHHHHHHhCCCEEEEEEEEe
Q 037241 232 NICGDEAHISICSPK-K-PGMFSTICYVLEKHKIEVISAQVSS 272 (306)
Q Consensus 232 ~i~g~~~~I~I~c~~-r-~glL~~Il~aLe~l~LdVvsa~is~ 272 (306)
....+-+.|.|.... . +|.+.+|+.+|.++++.|....-.+
T Consensus 297 t~~~~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~~ 339 (441)
T TIGR00657 297 SLDRNQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSS 339 (441)
T ss_pred EEeCCEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecC
Confidence 344566678877543 3 7999999999999999998886333
No 176
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=30.85 E-value=1.7e+02 Score=27.00 Aligned_cols=49 Identities=22% Similarity=0.364 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhcCCCC-------------------CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037241 108 RKKMRNMFANLHSLLPQL-------------------PPKADKSSIVDEAVSYIKTLQQTLRKLQKQKLE 158 (306)
Q Consensus 108 R~~~~~~~~~Lr~lvP~~-------------------~~k~~k~~iL~~ai~YIk~Lq~~~~~L~~~~~~ 158 (306)
|.-|...|..|+..=... ...+-...||.++. ||.|+.+|++||.++.+
T Consensus 6 ~qLI~~lf~RL~~ae~~prD~eAe~lI~~~~~~qP~A~Y~laQ~vlvQE~A--L~~a~~ri~eLe~ql~q 73 (247)
T PF09849_consen 6 RQLIDDLFSRLKQAEAQPRDPEAEALIAQALARQPDAPYYLAQTVLVQEQA--LKQAQARIQELEAQLQQ 73 (247)
T ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHh
Confidence 456777788887754431 11222333333322 78899999999999865
No 177
>PF14992 TMCO5: TMCO5 family
Probab=30.29 E-value=84 Score=29.57 Aligned_cols=27 Identities=22% Similarity=0.447 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037241 133 SIVDEAVSYIKTLQQTLRKLQKQKLER 159 (306)
Q Consensus 133 ~iL~~ai~YIk~Lq~~~~~L~~~~~~~ 159 (306)
.+..+++.||+.||+.+++++.+++.+
T Consensus 144 ~l~eDq~~~i~klkE~L~rmE~ekE~~ 170 (280)
T PF14992_consen 144 QLCEDQANEIKKLKEKLRRMEEEKEML 170 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447899999999999999999988864
No 178
>PLN02551 aspartokinase
Probab=30.22 E-value=1.6e+02 Score=30.08 Aligned_cols=37 Identities=16% Similarity=0.219 Sum_probs=30.2
Q ss_pred eCCeEEEEEEcCC---CCChHHHHHHHHHhCCCEEEEEEE
Q 037241 234 CGDEAHISICSPK---KPGMFSTICYVLEKHKIEVISAQV 270 (306)
Q Consensus 234 ~g~~~~I~I~c~~---r~glL~~Il~aLe~l~LdVvsa~i 270 (306)
..+-+.|+|.+.. .+|.+.+|+.+|.++++.|.....
T Consensus 363 ~~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~Iss 402 (521)
T PLN02551 363 KRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT 402 (521)
T ss_pred CCCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEEec
Confidence 3455688998764 789999999999999999988853
No 179
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=30.11 E-value=80 Score=21.47 Aligned_cols=20 Identities=30% Similarity=0.282 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 037241 142 IKTLQQTLRKLQKQKLERLQ 161 (306)
Q Consensus 142 Ik~Lq~~~~~L~~~~~~~~~ 161 (306)
|..|++++..|+.+++.|..
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~ 20 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQA 20 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHH
Confidence 56788889999888887753
No 180
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=29.80 E-value=1.6e+02 Score=24.32 Aligned_cols=44 Identities=23% Similarity=0.376 Sum_probs=32.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCC--CEEEEEEEEeeCCeEEEEEEE
Q 037241 239 HISICSPKKPGMFSTICYVLEKHK--IEVISAQVSSDLTRRMYMIQV 283 (306)
Q Consensus 239 ~I~I~c~~r~glL~~Il~aLe~l~--LdVvsa~is~~~~~v~~~i~a 283 (306)
.+-|..+.+||-|+.|+++|-.++ ||-+-|-++-. +..+..+.+
T Consensus 71 VlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek-~KAlli~r~ 116 (142)
T COG4747 71 VLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEK-QKALLIVRV 116 (142)
T ss_pred EEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecC-ceEEEEEEh
Confidence 456778899999999999997765 66677776554 555555544
No 181
>PRK09084 aspartate kinase III; Validated
Probab=29.55 E-value=2.2e+02 Score=28.34 Aligned_cols=39 Identities=18% Similarity=0.312 Sum_probs=31.8
Q ss_pred EEeCCeEEEEEEcC---CCCChHHHHHHHHHhCCCEEEEEEE
Q 037241 232 NICGDEAHISICSP---KKPGMFSTICYVLEKHKIEVISAQV 270 (306)
Q Consensus 232 ~i~g~~~~I~I~c~---~r~glL~~Il~aLe~l~LdVvsa~i 270 (306)
....+.++|+|.+. ..+|.+.+|+.+|.++++.|.-.+.
T Consensus 301 t~~~~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~s 342 (448)
T PRK09084 301 ALRRNQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLITT 342 (448)
T ss_pred EeeCCEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEec
Confidence 34566778999865 4689999999999999999988764
No 182
>PRK06635 aspartate kinase; Reviewed
Probab=29.28 E-value=2.3e+02 Score=27.53 Aligned_cols=42 Identities=26% Similarity=0.353 Sum_probs=31.4
Q ss_pred EeCCeEEEEEEc-CCCCChHHHHHHHHHhCCCEEEEEEEEeeC
Q 037241 233 ICGDEAHISICS-PKKPGMFSTICYVLEKHKIEVISAQVSSDL 274 (306)
Q Consensus 233 i~g~~~~I~I~c-~~r~glL~~Il~aLe~l~LdVvsa~is~~~ 274 (306)
...+-+.|.|.. ..++|.+.+|+.+|.++++.|...+.+...
T Consensus 258 ~~~~v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~ 300 (404)
T PRK06635 258 FDKDEAKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSE 300 (404)
T ss_pred ecCCeEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCC
Confidence 344555677654 347899999999999999999987665433
No 183
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=29.26 E-value=1.1e+02 Score=22.50 Aligned_cols=28 Identities=18% Similarity=0.128 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037241 132 SSIVDEAVSYIKTLQQTLRKLQKQKLER 159 (306)
Q Consensus 132 ~~iL~~ai~YIk~Lq~~~~~L~~~~~~~ 159 (306)
..-|.+|+.-|..|+.+++.|..+.+..
T Consensus 39 ~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 39 ERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4669999999999999999999998764
No 184
>PHA03386 P10 fibrous body protein; Provisional
Probab=28.44 E-value=1.2e+02 Score=23.71 Aligned_cols=33 Identities=15% Similarity=0.206 Sum_probs=27.5
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 037241 129 ADKSSIVDEAVSYIKTLQQTLRKLQKQKLERLQ 161 (306)
Q Consensus 129 ~~k~~iL~~ai~YIk~Lq~~~~~L~~~~~~~~~ 161 (306)
|+|..||.....-|+.+-.+|..|+.+++.+..
T Consensus 1 MSKpnILl~Ir~dIkavd~KVdaLQ~qV~dv~~ 33 (94)
T PHA03386 1 MSKPSVLTQILDAVQEVDTKVDALQTQLNGLEE 33 (94)
T ss_pred CCcchHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 578889988888899988888888888887753
No 185
>PRK08210 aspartate kinase I; Reviewed
Probab=27.13 E-value=2.3e+02 Score=27.60 Aligned_cols=37 Identities=24% Similarity=0.427 Sum_probs=28.9
Q ss_pred EEEeCCeEEEEEEcC---CCCChHHHHHHHHHhCCCEEEE
Q 037241 231 LNICGDEAHISICSP---KKPGMFSTICYVLEKHKIEVIS 267 (306)
Q Consensus 231 V~i~g~~~~I~I~c~---~r~glL~~Il~aLe~l~LdVvs 267 (306)
+.+..+-+.|.|... ..+|++.+++.+|.+.++.|+.
T Consensus 333 v~~~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~ 372 (403)
T PRK08210 333 PSVRENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ 372 (403)
T ss_pred EEEeCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence 445555566766643 5789999999999999999985
No 186
>PRK06635 aspartate kinase; Reviewed
Probab=26.80 E-value=2.5e+02 Score=27.20 Aligned_cols=39 Identities=18% Similarity=0.296 Sum_probs=30.7
Q ss_pred EEEeCCeEEEEEEc---CCCCChHHHHHHHHHhCCCEEEEEE
Q 037241 231 LNICGDEAHISICS---PKKPGMFSTICYVLEKHKIEVISAQ 269 (306)
Q Consensus 231 V~i~g~~~~I~I~c---~~r~glL~~Il~aLe~l~LdVvsa~ 269 (306)
+.+..+-+.|.|.. ...+|.+.+|+.+|.+.+++|....
T Consensus 334 i~~~~~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~ 375 (404)
T PRK06635 334 VTYDDDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMIS 375 (404)
T ss_pred EEEcCCeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEE
Confidence 44455666777764 4578999999999999999998865
No 187
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=26.77 E-value=1.1e+02 Score=21.94 Aligned_cols=28 Identities=18% Similarity=0.215 Sum_probs=20.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 037241 132 SSIVDEAVSYIKTLQQTLRKLQKQKLERLQG 162 (306)
Q Consensus 132 ~~iL~~ai~YIk~Lq~~~~~L~~~~~~~~~~ 162 (306)
+.+|.+ -|+.|+.++.+|+.|..-|...
T Consensus 16 VevLK~---~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 16 VEVLKE---QIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp HHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHhc
Confidence 455553 5788999999999998877543
No 188
>PHA02414 hypothetical protein
Probab=26.61 E-value=1e+02 Score=24.33 Aligned_cols=46 Identities=22% Similarity=0.352 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCCC-ChhhHHHHHHHH-HHHHHHHHHHHHH
Q 037241 108 RKKMRNMFANLHSLLPQLPPKA-DKSSIVDEAVSY-IKTLQQTLRKLQK 154 (306)
Q Consensus 108 R~~~~~~~~~Lr~lvP~~~~k~-~k~~iL~~ai~Y-Ik~Lq~~~~~L~~ 154 (306)
-..++-...+||++|-++ .|. .-.+-=..+|-| |..|++.+.+|..
T Consensus 31 n~eL~~av~ELRdivvsl-DKd~Av~sEKqshi~yQi~~Lee~i~aL~~ 78 (111)
T PHA02414 31 NKELEVAVAELRDIVVSL-DKDVAVNSEKQSHIYYQIERLEEKISALAE 78 (111)
T ss_pred hHHHHHHHHHHHHHHHHh-hhHhhhhHHHhhHHHHHHHHHHHHHHHHHh
Confidence 356777889999999877 332 111222334555 5566666665553
No 189
>PF05687 DUF822: Plant protein of unknown function (DUF822); InterPro: IPR008540 This group of proteins contains members of the BZR1/LAT61 family of plant transcriptional repressors involved in controlling the response to Brassinosteroids (BRs). BRs are plant hormones that play essential roles in growth and development. BZR1 binds directly to DNA repressing the synthesis of genes involved in BR synthesis. Phosphorylation of BZR1 by BIN1 targets BZR1 to the 20S proteosome, while dephosphorylation leads to nuclear accumulation of BZR1 [].
Probab=26.30 E-value=1.6e+02 Score=25.02 Aligned_cols=28 Identities=32% Similarity=0.349 Sum_probs=22.1
Q ss_pred chhhhccHHHHHHHHHHHHHHHHHHhcC
Q 037241 95 SEHEIHIWTERERRKKMRNMFANLHSLL 122 (306)
Q Consensus 95 ~~~~~h~~~Er~RR~~~~~~~~~Lr~lv 122 (306)
..|++....||+||.--...|.-||..=
T Consensus 10 kErEnnk~RERrRRAIaakIfaGLR~~G 37 (150)
T PF05687_consen 10 KERENNKRRERRRRAIAAKIFAGLRAHG 37 (150)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4667788899999977777788888753
No 190
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=26.19 E-value=3.1e+02 Score=26.51 Aligned_cols=47 Identities=26% Similarity=0.376 Sum_probs=32.0
Q ss_pred EeCCeEEEEEEcC---CCCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEEE
Q 037241 233 ICGDEAHISICSP---KKPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYMI 281 (306)
Q Consensus 233 i~g~~~~I~I~c~---~r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~i 281 (306)
+..+-+.|.|... ..+|.+.+++.+|.+.+++|+... +.+..+.+.|
T Consensus 333 ~~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~i~--~s~~~is~vv 382 (401)
T TIGR00656 333 VEEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILMIG--SSETNISFLV 382 (401)
T ss_pred EeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--cCCCEEEEEE
Confidence 3344455666543 579999999999999999998543 4444443334
No 191
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.98 E-value=84 Score=23.71 Aligned_cols=49 Identities=20% Similarity=0.282 Sum_probs=35.8
Q ss_pred EEEcCCCCChHHHHHHHHHhCCCEEEEEEEEe--eCCeEEEEEEEEEcCcc
Q 037241 241 SICSPKKPGMFSTICYVLEKHKIEVISAQVSS--DLTRRMYMIQVHVNGAS 289 (306)
Q Consensus 241 ~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~--~~~~v~~~i~akv~~~~ 289 (306)
+++-.-||-+|.+|..||..|++-|-+|.|.. .+++-..+......+..
T Consensus 4 ElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~ 54 (77)
T cd04898 4 ELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHD 54 (77)
T ss_pred cccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCC
Confidence 44445588999999999999999999999974 44555445444555543
No 192
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=25.63 E-value=2.2e+02 Score=30.94 Aligned_cols=49 Identities=12% Similarity=0.078 Sum_probs=34.8
Q ss_pred eCCeEEEEEEcCC---CCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEEEE
Q 037241 234 CGDEAHISICSPK---KPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYMIQ 282 (306)
Q Consensus 234 ~g~~~~I~I~c~~---r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~i~ 282 (306)
..+-++|+|.+.. .+|.+.+|+.+|.++++.|...+.+..+..+.++|.
T Consensus 314 ~~~v~~i~i~~~~~~g~~g~~~~if~~l~~~~I~v~~i~~~~s~~sis~~i~ 365 (810)
T PRK09466 314 LDDVCLIELQVPASHDFKLAQKELDQLLKRAQLRPLAVGVHPDRQLLQLAYT 365 (810)
T ss_pred cCCEEEEEEecCCcCCcchHHHHHHHHHHHCCCeEEEEEecCCCcEEEEEEe
Confidence 3455678887653 467899999999999999998875544443433443
No 193
>PLN02551 aspartokinase
Probab=25.07 E-value=2.9e+02 Score=28.32 Aligned_cols=51 Identities=12% Similarity=0.190 Sum_probs=35.5
Q ss_pred EEEeCCeEEEEEEcC--CCCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEEE
Q 037241 231 LNICGDEAHISICSP--KKPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYMI 281 (306)
Q Consensus 231 V~i~g~~~~I~I~c~--~r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~i 281 (306)
|.+..+-+.|.|... +.+|++.+++.+|.+.|+.|.-.+..+..-.+.++|
T Consensus 439 V~v~~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqgaSeinIS~vV 491 (521)
T PLN02551 439 VNLLQGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGASKVNISLIV 491 (521)
T ss_pred EEEeCCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecCCCcEEEEEE
Confidence 334445556666643 468999999999999999998777655444444444
No 194
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=24.98 E-value=4.8e+02 Score=23.02 Aligned_cols=52 Identities=13% Similarity=0.222 Sum_probs=38.3
Q ss_pred EEEEeCCeEEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeC--CeEEEEE
Q 037241 230 VLNICGDEAHISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDL--TRRMYMI 281 (306)
Q Consensus 230 ~V~i~g~~~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~--~~v~~~i 281 (306)
.|.+......+-+....+||.+-+|-..|-++++.|-+.++.... +..+..|
T Consensus 141 ~vd~~~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl 194 (208)
T TIGR00719 141 AIEFRGEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTI 194 (208)
T ss_pred EEEecCCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEE
Confidence 344444444555566789999999999999999999999999754 4444444
No 195
>PRK07431 aspartate kinase; Provisional
Probab=24.67 E-value=2.7e+02 Score=28.68 Aligned_cols=40 Identities=18% Similarity=0.268 Sum_probs=33.0
Q ss_pred EEEEeCCeEEEEEEcC---CCCChHHHHHHHHHhCCCEEEEEE
Q 037241 230 VLNICGDEAHISICSP---KKPGMFSTICYVLEKHKIEVISAQ 269 (306)
Q Consensus 230 ~V~i~g~~~~I~I~c~---~r~glL~~Il~aLe~l~LdVvsa~ 269 (306)
.+++..+-+.|.|... ..+|++.+++.+|.+.+++|+..+
T Consensus 341 ~i~~~~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~ 383 (587)
T PRK07431 341 EVLVETNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS 383 (587)
T ss_pred cEEEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE
Confidence 3556667777888765 478999999999999999998777
No 196
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=24.58 E-value=99 Score=27.04 Aligned_cols=36 Identities=11% Similarity=0.303 Sum_probs=30.2
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEe
Q 037241 237 EAHISICSPKKPGMFSTICYVLEKHKIEVISAQVSS 272 (306)
Q Consensus 237 ~~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~ 272 (306)
-+.+.|....|||++-++.+.|..+|+.+.+.+..+
T Consensus 92 ~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~ 127 (176)
T COG2716 92 PVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRT 127 (176)
T ss_pred eEEEEEEecCCccHHHHHHHHHHhcCCchhhceeee
Confidence 356788889999999999999999998887766544
No 197
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=24.53 E-value=2.5e+02 Score=30.40 Aligned_cols=41 Identities=24% Similarity=0.275 Sum_probs=31.8
Q ss_pred EEeCCeEEEEEEcC---CCCChHHHHHHHHHhCCCEEEEEEEEe
Q 037241 232 NICGDEAHISICSP---KKPGMFSTICYVLEKHKIEVISAQVSS 272 (306)
Q Consensus 232 ~i~g~~~~I~I~c~---~r~glL~~Il~aLe~l~LdVvsa~is~ 272 (306)
....+-+.|.|... .++|++.+|+.+|.++++.|.-.+.++
T Consensus 310 t~~~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqss 353 (819)
T PRK09436 310 SNLNNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSS 353 (819)
T ss_pred EEeCCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCC
Confidence 34455667888754 578999999999999999997776544
No 198
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=24.09 E-value=5.2e+02 Score=23.88 Aligned_cols=59 Identities=25% Similarity=0.344 Sum_probs=36.2
Q ss_pred chhhhc-cHHHHHHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHH-HHHHHHHHHHHHHHHHHHhc
Q 037241 95 SEHEIH-IWTERERRKKMRNMFANLHSLLPQLPPKADKSSIVDEAVSY-IKTLQQTLRKLQKQKLERLQ 161 (306)
Q Consensus 95 ~~~~~h-~~~Er~RR~~~~~~~~~Lr~lvP~~~~k~~k~~iL~~ai~Y-Ik~Lq~~~~~L~~~~~~~~~ 161 (306)
.+|..| .+-|+--|.+++.+..+=- -.||---=..-|+| |+.|.++.+.|..+.+.|.+
T Consensus 58 r~RL~HLS~EEK~~RrKLKNRVAAQt--------aRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~ 118 (292)
T KOG4005|consen 58 RRRLDHLSWEEKVQRRKLKNRVAAQT--------ARDRKKARMEEMEYEIKDLTEENEILQNENDSLRA 118 (292)
T ss_pred HHhhcccCHHHHHHHHHHHHHHHHhh--------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788 6777778888888765421 12221111223444 78888888888777776643
No 199
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=24.04 E-value=2.6e+02 Score=19.76 Aligned_cols=40 Identities=33% Similarity=0.444 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHH
Q 037241 105 RERRKKMRNMFANLHSLLPQLPPKADKSSIVDEAVSYIKTLQQTLRKL 152 (306)
Q Consensus 105 r~RR~~~~~~~~~Lr~lvP~~~~k~~k~~iL~~ai~YIk~Lq~~~~~L 152 (306)
|.-|-.+...+..+..++-. .+ .++|.+||+.+-+.++.+
T Consensus 17 R~~RHD~~NhLqvI~gllql--g~------~~~a~eYi~~~~~~~~~~ 56 (62)
T PF14689_consen 17 RAQRHDFLNHLQVIYGLLQL--GK------YEEAKEYIKELSKDLQQE 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHT--T-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC--CC------HHHHHHHHHHHHHHHHHH
Confidence 66677788889999988854 23 467889999998888776
No 200
>PRK12483 threonine dehydratase; Reviewed
Probab=23.45 E-value=3e+02 Score=28.16 Aligned_cols=49 Identities=22% Similarity=0.411 Sum_probs=34.1
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCC-eEEEEEEEEEcC
Q 037241 237 EAHISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLT-RRMYMIQVHVNG 287 (306)
Q Consensus 237 ~~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~-~v~~~i~akv~~ 287 (306)
.+.+.|.-+.+||-|.+++..|-+. +|+..+...... .....|.+++.+
T Consensus 345 ~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~~~v~v~ie~~~ 394 (521)
T PRK12483 345 EAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADAREAHLFVGVQTHP 394 (521)
T ss_pred EEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCeeEEEEEEEeCC
Confidence 3788999999999999999999888 666666554222 233335555554
No 201
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=23.36 E-value=76 Score=22.44 Aligned_cols=17 Identities=35% Similarity=0.602 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 037241 142 IKTLQQTLRKLQKQKLE 158 (306)
Q Consensus 142 Ik~Lq~~~~~L~~~~~~ 158 (306)
++.+++++++++++.++
T Consensus 50 ~~~~~k~l~~le~e~~~ 66 (68)
T PF06305_consen 50 IRRLRKELKKLEKELEQ 66 (68)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 45555555555555543
No 202
>COG1591 Holliday junction resolvase - archaeal type [DNA replication, recombination, and repair]
Probab=23.21 E-value=2.1e+02 Score=23.97 Aligned_cols=50 Identities=16% Similarity=0.164 Sum_probs=35.4
Q ss_pred HHHHHHHHHhCCCEEEEEEE-----------EeeCCeEEEEEEEEEcCccccccCCCChHHHHH
Q 037241 251 FSTICYVLEKHKIEVISAQV-----------SSDLTRRMYMIQVHVNGASDQFSEALPVEEMYK 303 (306)
Q Consensus 251 L~~Il~aLe~l~LdVvsa~i-----------s~~~~~v~~~i~akv~~~~~~~~~~~~~ee~~k 303 (306)
=-+++..|+++|+.|+.+-. ....+.++++|.+|.......| +.-||+-+
T Consensus 10 EReLv~~L~e~GfAvvR~paSG~sk~p~pDivA~~g~~~l~iE~K~~~~~kiY---l~~e~ve~ 70 (137)
T COG1591 10 ERELVRILWERGFAVVRAPASGGSKRPLPDIVAGNGGVYLAIEVKSRRETKIY---LDKEQVEK 70 (137)
T ss_pred HHHHHHHHHhcCceEEEcccCCCCCCCCCCEEecCCCEEEEEEEEeccCCcEE---EcHHHHHH
Confidence 34788999999999999822 2234567888999998877666 44444433
No 203
>PRK08639 threonine dehydratase; Validated
Probab=23.09 E-value=3.1e+02 Score=26.98 Aligned_cols=35 Identities=9% Similarity=0.114 Sum_probs=28.0
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEE
Q 037241 237 EAHISICSPKKPGMFSTICYVLEKHKIEVISAQVS 271 (306)
Q Consensus 237 ~~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is 271 (306)
.+.+++.-+.+||.|.++++.+-..+-+|+..+.-
T Consensus 336 ~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~ 370 (420)
T PRK08639 336 KHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYL 370 (420)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEe
Confidence 47889999999999999999555555588877654
No 204
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=23.05 E-value=1.9e+02 Score=19.67 Aligned_cols=29 Identities=17% Similarity=0.184 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037241 132 SSIVDEAVSYIKTLQQTLRKLQKQKLERL 160 (306)
Q Consensus 132 ~~iL~~ai~YIk~Lq~~~~~L~~~~~~~~ 160 (306)
...-..+-.||+.|.+++..+.++++.+.
T Consensus 15 v~FQ~~v~~~lq~Lt~kL~~vs~RLe~LE 43 (47)
T PF10393_consen 15 VAFQNKVTSALQSLTQKLDAVSKRLEALE 43 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456788899999999999999888764
No 205
>PRK09181 aspartate kinase; Validated
Probab=23.04 E-value=2.7e+02 Score=28.19 Aligned_cols=36 Identities=19% Similarity=0.251 Sum_probs=28.0
Q ss_pred eCCeEEEEEEcC---CCCChHHHHHHHHHhCCCEEEEEE
Q 037241 234 CGDEAHISICSP---KKPGMFSTICYVLEKHKIEVISAQ 269 (306)
Q Consensus 234 ~g~~~~I~I~c~---~r~glL~~Il~aLe~l~LdVvsa~ 269 (306)
..+-+.|+|... ..+|++.+|+.+|+++++.|....
T Consensus 326 ~~~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~~i~ 364 (475)
T PRK09181 326 SDKVFALEVFDQDMVGEDGYDLEILEILTRHKVSYISKA 364 (475)
T ss_pred cCCEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEEEEE
Confidence 345567788654 468999999999999999998543
No 206
>TIGR02159 PA_CoA_Oxy4 phenylacetate-CoA oxygenase, PaaJ subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=22.91 E-value=1.7e+02 Score=24.63 Aligned_cols=43 Identities=12% Similarity=0.123 Sum_probs=29.3
Q ss_pred EEEEeCCeEEEEEEcCCC-----CChHHHHHHHHHhCCCEEEEEEEEe
Q 037241 230 VLNICGDEAHISICSPKK-----PGMFSTICYVLEKHKIEVISAQVSS 272 (306)
Q Consensus 230 ~V~i~g~~~~I~I~c~~r-----~glL~~Il~aLe~l~LdVvsa~is~ 272 (306)
.|++.++.+.|.|.-+.- .-+-.+|.++|+.+|++-+.+++.-
T Consensus 19 ~V~v~gd~V~VtIt~Ty~gcpa~e~L~~~I~~aL~~~Gv~~V~V~i~~ 66 (146)
T TIGR02159 19 EVDVDGGGVVVKFTPTYSGCPALEVIRQDIRDAVRALGVEVVEVSTSL 66 (146)
T ss_pred EEEEECCEEEEEEEeCCCCCchHHHHHHHHHHHHHhcCCCeEEEeEee
Confidence 356678888888875543 3345568888988887766666543
No 207
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.72 E-value=2.7e+02 Score=19.33 Aligned_cols=25 Identities=12% Similarity=0.115 Sum_probs=20.6
Q ss_pred CCCChHHHHHHHHHhCCCEEEEEEE
Q 037241 246 KKPGMFSTICYVLEKHKIEVISAQV 270 (306)
Q Consensus 246 ~r~glL~~Il~aLe~l~LdVvsa~i 270 (306)
..+|++.+++.+|.+.++.++....
T Consensus 12 ~~~gv~~~~~~~L~~~~i~~i~~~~ 36 (63)
T cd04920 12 SLLHKLGPALEVFGKKPVHLVSQAA 36 (63)
T ss_pred cCccHHHHHHHHHhcCCceEEEEeC
Confidence 5789999999999998888865543
No 208
>PRK09224 threonine dehydratase; Reviewed
Probab=22.46 E-value=3.4e+02 Score=27.56 Aligned_cols=49 Identities=20% Similarity=0.346 Sum_probs=32.5
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeC-CeEEEEEEEEEcC
Q 037241 237 EAHISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDL-TRRMYMIQVHVNG 287 (306)
Q Consensus 237 ~~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~-~~v~~~i~akv~~ 287 (306)
++.+.|.-|.+||-|.++++.|- +-+|+..+....+ +..-..|.+++.+
T Consensus 328 e~~l~v~iPerPGaL~~f~~~l~--~~nItef~yr~~~~~~a~V~vgie~~~ 377 (504)
T PRK09224 328 EALLAVTIPEEPGSFLKFCELLG--GRNVTEFNYRYADAKEAHIFVGVQLSR 377 (504)
T ss_pred EEEEEEEeCCCCCHHHHHHHHhc--cCcEEEEEEEecCCCeEEEEEEEEeCC
Confidence 47899999999999999999998 4555555544322 2222234445554
No 209
>PF13591 MerR_2: MerR HTH family regulatory protein
Probab=22.44 E-value=1.4e+02 Score=22.45 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 037241 137 EAVSYIKTLQQTLRKLQKQKLERL 160 (306)
Q Consensus 137 ~ai~YIk~Lq~~~~~L~~~~~~~~ 160 (306)
.+|.-|-+|-++++.|+++...|.
T Consensus 60 ~gi~lil~LLd~i~~L~~el~~L~ 83 (84)
T PF13591_consen 60 EGIALILDLLDRIEQLRRELRELR 83 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467788888888888888887764
No 210
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=21.88 E-value=3.4e+02 Score=29.45 Aligned_cols=51 Identities=20% Similarity=0.287 Sum_probs=38.4
Q ss_pred EEEeCCeEEEEEEcC---CCCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEEE
Q 037241 231 LNICGDEAHISICSP---KKPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYMI 281 (306)
Q Consensus 231 V~i~g~~~~I~I~c~---~r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~i 281 (306)
+++..+-+.|.|... ..+|++.+++.+|.+.+++|+-.+-.+.+..+.+.|
T Consensus 390 i~~~~~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~IsqgsSe~~Is~vV 443 (819)
T PRK09436 390 LEVEENLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIAQGSSERSISVVI 443 (819)
T ss_pred EEEeCCEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEEeccccceEEEEE
Confidence 556667777888765 478999999999999999998877666554443333
No 211
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=21.87 E-value=1.4e+02 Score=20.38 Aligned_cols=20 Identities=15% Similarity=0.263 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 037241 140 SYIKTLQQTLRKLQKQKLER 159 (306)
Q Consensus 140 ~YIk~Lq~~~~~L~~~~~~~ 159 (306)
.|+..|+.++..|+.+...|
T Consensus 25 ~~~~~le~~~~~L~~en~~L 44 (54)
T PF07716_consen 25 QREEELEQEVQELEEENEQL 44 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555444
No 212
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=21.55 E-value=1.2e+02 Score=29.92 Aligned_cols=46 Identities=13% Similarity=0.268 Sum_probs=37.7
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEEE
Q 037241 236 DEAHISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYMI 281 (306)
Q Consensus 236 ~~~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~i 281 (306)
....|-|.-..+||.+.+|..+|-+++++|-+..+...++..+.+|
T Consensus 337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~ii 382 (409)
T PRK11790 337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVI 382 (409)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEE
Confidence 3345666778899999999999999999998888877777666666
No 213
>PF12344 UvrB: Ultra-violet resistance protein B; InterPro: IPR024759 This entry represents a domain found towards the C terminus of the ultraviolet resistance protein B (UvrB). UvrB conveys mutational resistance against UV light to various different species []. This domain is approximately 40 amino acids in length and contains two conserved sequence motifs: YAD and RRR.; PDB: 2D7D_A 2NMV_A 3UWX_B 1D2M_A 1C4O_A 2FDC_A 1D9Z_A 1T5L_B 1D9X_A.
Probab=21.45 E-value=1.4e+02 Score=20.08 Aligned_cols=30 Identities=17% Similarity=0.370 Sum_probs=21.7
Q ss_pred hhhhccHHHHHHHHHHHHHHHHHHhcCCCC
Q 037241 96 EHEIHIWTERERRKKMRNMFANLHSLLPQL 125 (306)
Q Consensus 96 ~~~~h~~~Er~RR~~~~~~~~~Lr~lvP~~ 125 (306)
..+.....|-.||.++...|..-..++|..
T Consensus 8 ~SM~~ai~eT~rRR~~Q~~yN~~h~ItP~t 37 (44)
T PF12344_consen 8 DSMQKAIDETNRRREIQIAYNKEHGITPKT 37 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 345667889999999999999999999975
No 214
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=21.41 E-value=3.2e+02 Score=19.59 Aligned_cols=46 Identities=22% Similarity=0.257 Sum_probs=30.5
Q ss_pred HHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 037241 111 MRNMFANLHSLLPQLPPKADKSSIVDEAVSYIKTLQQTLRKLQKQKLERLQ 161 (306)
Q Consensus 111 ~~~~~~~Lr~lvP~~~~k~~k~~iL~~ai~YIk~Lq~~~~~L~~~~~~~~~ 161 (306)
|.+.+..|..++ ..++..++.+|-.-|.....+++.|+.+++++..
T Consensus 16 i~~Gae~m~~~~-----~t~~~~~~~~~~~~l~~s~~kI~~L~~~L~~l~~ 61 (70)
T PF02185_consen 16 IKEGAENMLQAY-----STDKKKVLSEAESQLRESNQKIELLREQLEKLQQ 61 (70)
T ss_dssp HHHHHHHHHHHH-----CCHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH-----ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444443 3444447888888888888888888888887653
No 215
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=21.21 E-value=1.6e+02 Score=22.22 Aligned_cols=27 Identities=15% Similarity=0.227 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 037241 135 VDEAVSYIKTLQQTLRKLQKQKLERLQ 161 (306)
Q Consensus 135 L~~ai~YIk~Lq~~~~~L~~~~~~~~~ 161 (306)
|.+-.+.-..|+++++.|+.+++++.+
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~~ 28 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNKR 28 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455567778888899988888877654
No 216
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=21.16 E-value=2.5e+02 Score=29.26 Aligned_cols=64 Identities=25% Similarity=0.361 Sum_probs=42.8
Q ss_pred chhhhccHHHHHHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHH---HH------------HHHHHHHHHHHHHHHHHHH
Q 037241 95 SEHEIHIWTERERRKKMRNMFANLHSLLPQLPPKADKSSIVDEA---VS------------YIKTLQQTLRKLQKQKLER 159 (306)
Q Consensus 95 ~~~~~h~~~Er~RR~~~~~~~~~Lr~lvP~~~~k~~k~~iL~~a---i~------------YIk~Lq~~~~~L~~~~~~~ 159 (306)
...+.+...|-.||.++...|..-+.++|.. .+..=..+|... .+ --+.+++.+++|++++.+.
T Consensus 558 T~sM~~Ai~ET~RRR~iQ~~yN~~hgItP~t-i~K~i~d~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~I~~Le~~M~~a 636 (663)
T COG0556 558 TDSMQKAIDETERRREIQMAYNEEHGITPQT-IKKKIRDILDGEYEEDEYKAKIEKKASKMSKKELEKLIKKLEKEMKEA 636 (663)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCchh-hhhhhhHhhhhhhhhhhhhhhcccccccCCHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999999999999975 222111111111 11 1456777777777777654
No 217
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=21.10 E-value=3.4e+02 Score=27.59 Aligned_cols=34 Identities=24% Similarity=0.525 Sum_probs=27.5
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEE
Q 037241 236 DEAHISICSPKKPGMFSTICYVLEKHKIEVISAQVS 271 (306)
Q Consensus 236 ~~~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is 271 (306)
.++++.|.-|.+||-|.+++++|-.. +|+..+..
T Consensus 324 re~~l~V~iPerPGal~~f~~~i~~~--nItef~yr 357 (499)
T TIGR01124 324 REALLAVTIPEQPGSFLKFCELLGNR--NITEFNYR 357 (499)
T ss_pred CEEEEEEEeCCCCCHHHHHHHHhhhc--ceEEEEEE
Confidence 45889999999999999999999874 55554444
No 218
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=20.97 E-value=3.7e+02 Score=26.49 Aligned_cols=39 Identities=21% Similarity=0.307 Sum_probs=31.0
Q ss_pred EEEeCCeEEEEEEcC---CCCChHHHHHHHHHhCCCEEEEEE
Q 037241 231 LNICGDEAHISICSP---KKPGMFSTICYVLEKHKIEVISAQ 269 (306)
Q Consensus 231 V~i~g~~~~I~I~c~---~r~glL~~Il~aLe~l~LdVvsa~ 269 (306)
|.+..+-+.|.|... ..+|++.+|+.+|.+.+++|....
T Consensus 372 I~~~~~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~ 413 (441)
T TIGR00657 372 VEVEKGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS 413 (441)
T ss_pred EEEcCCeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence 445556667888543 579999999999999999998776
No 219
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=20.75 E-value=77 Score=33.66 Aligned_cols=43 Identities=9% Similarity=0.159 Sum_probs=38.6
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEEEEEE
Q 037241 238 AHISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYMIQVH 284 (306)
Q Consensus 238 ~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~i~ak 284 (306)
..++|....|+|+|..|+.+|+ ||.-+.+++.+..++..|...
T Consensus 632 ~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~ 674 (693)
T PRK00227 632 NILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALK 674 (693)
T ss_pred cEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEec
Confidence 5788999999999999999999 999999999999887777655
No 220
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=20.32 E-value=3e+02 Score=24.98 Aligned_cols=52 Identities=19% Similarity=0.235 Sum_probs=35.3
Q ss_pred cEEEEEeCCeEEEEEEcCCCC-----ChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEE
Q 037241 228 NVVLNICGDEAHISICSPKKP-----GMFSTICYVLEKHKIEVISAQVSSDLTRRMYM 280 (306)
Q Consensus 228 ~V~V~i~g~~~~I~I~c~~r~-----glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~ 280 (306)
.|.+++.+.-+.|.+..+.+. .++..+.++|+.+. +-+.+-|.+-.+..|+.
T Consensus 3 ~v~~~~~~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~-~~vr~vvltg~g~~F~a 59 (255)
T PRK08150 3 LVSYELDGGVATIGLNRPAKRNALNDGLIAALRAAFARLP-EGVRAVVLHGEGDHFCA 59 (255)
T ss_pred eEEEEeeCCEEEEEEcCCccccCCCHHHHHHHHHHHHHhh-cCCeEEEEECCCCceec
Confidence 366777777778899887542 36778888888877 55566666655555554
No 221
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=20.24 E-value=1.6e+02 Score=17.04 Aligned_cols=17 Identities=24% Similarity=0.446 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 037241 142 IKTLQQTLRKLQKQKLE 158 (306)
Q Consensus 142 Ik~Lq~~~~~L~~~~~~ 158 (306)
|..|+.++.+|+.++..
T Consensus 3 ~~rlr~rI~dLer~L~~ 19 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSE 19 (23)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56778888888877653
No 222
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=20.24 E-value=2.1e+02 Score=21.73 Aligned_cols=21 Identities=19% Similarity=0.195 Sum_probs=18.5
Q ss_pred hHHHHHHHHHhCCCEEEEEEE
Q 037241 250 MFSTICYVLEKHKIEVISAQV 270 (306)
Q Consensus 250 lL~~Il~aLe~l~LdVvsa~i 270 (306)
-|+.|-++|++.|.+|+...-
T Consensus 9 ~Ls~v~~~L~~~GyeVv~l~~ 29 (80)
T PF03698_consen 9 GLSNVKEALREKGYEVVDLEN 29 (80)
T ss_pred CchHHHHHHHHCCCEEEecCC
Confidence 478999999999999998774
No 223
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=20.17 E-value=1.5e+02 Score=30.18 Aligned_cols=35 Identities=9% Similarity=0.210 Sum_probs=31.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEee
Q 037241 239 HISICSPKKPGMFSTICYVLEKHKIEVISAQVSSD 273 (306)
Q Consensus 239 ~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~ 273 (306)
.++|.|..|-|+..+|++.|-..++++....|...
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~ 36 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPI 36 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcCC
Confidence 37899999999999999999999999999999554
Done!