Query 037241
Match_columns 306
No_of_seqs 275 out of 1273
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 17:20:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037241.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037241hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.7 2.3E-17 8E-22 125.4 8.3 68 95-162 5-72 (82)
2 1hlo_A Protein (transcription 99.7 2E-16 6.8E-21 119.7 7.5 68 94-161 10-78 (80)
3 1nkp_B MAX protein, MYC proto- 99.6 3.2E-16 1.1E-20 119.4 8.1 67 96-162 2-69 (83)
4 1nkp_A C-MYC, MYC proto-oncoge 99.6 6.8E-16 2.3E-20 118.7 8.0 66 96-161 6-73 (88)
5 1nlw_A MAD protein, MAX dimeri 99.6 1.2E-15 4.1E-20 115.2 9.0 65 97-161 2-68 (80)
6 4h10_B Circadian locomoter out 99.6 1.1E-15 3.7E-20 112.4 6.4 59 95-153 7-65 (71)
7 1a0a_A BHLH, protein (phosphat 99.6 8.8E-16 3E-20 110.8 3.6 54 96-149 2-61 (63)
8 1an4_A Protein (upstream stimu 99.6 9.4E-16 3.2E-20 111.4 2.6 56 95-150 4-64 (65)
9 4ati_A MITF, microphthalmia-as 99.5 5.8E-15 2E-19 119.5 7.0 65 94-158 25-92 (118)
10 3u5v_A Protein MAX, transcript 99.5 1.9E-14 6.4E-19 107.5 4.5 59 95-153 4-65 (76)
11 4h10_A ARYL hydrocarbon recept 99.5 1.1E-14 3.8E-19 107.9 2.6 54 94-147 7-63 (73)
12 2ql2_B Neurod1, neurogenic dif 99.4 2.9E-13 1E-17 96.5 6.5 55 96-150 2-58 (60)
13 1mdy_A Protein (MYOD BHLH doma 99.4 3.1E-13 1.1E-17 98.7 5.6 56 95-150 11-67 (68)
14 2lfh_A DNA-binding protein inh 99.1 3.1E-11 1.1E-15 87.2 1.7 47 101-147 19-67 (68)
15 4f3l_A Mclock, circadian locom 98.9 1.5E-09 5.3E-14 102.8 6.3 54 95-148 11-64 (361)
16 4ath_A MITF, microphthalmia-as 98.8 2.4E-08 8.4E-13 74.9 7.6 53 108-160 4-59 (83)
17 4f3l_B BMAL1B; BHLH, PAS, circ 98.7 8.4E-09 2.9E-13 98.8 5.7 55 94-148 11-68 (387)
18 4aya_A DNA-binding protein inh 98.7 3.2E-08 1.1E-12 76.5 6.7 50 102-151 31-82 (97)
19 1zpv_A ACT domain protein; str 96.5 0.016 5.3E-07 43.0 9.0 51 237-287 5-55 (91)
20 2nyi_A Unknown protein; protei 96.0 0.025 8.6E-07 48.5 8.5 50 237-286 5-54 (195)
21 1u8s_A Glycine cleavage system 95.8 0.034 1.2E-06 47.3 8.4 49 237-285 6-54 (192)
22 2ko1_A CTR148A, GTP pyrophosph 95.6 0.047 1.6E-06 39.8 7.6 50 238-287 6-55 (88)
23 2nyi_A Unknown protein; protei 94.0 0.15 5.2E-06 43.6 7.6 38 237-274 93-130 (195)
24 1u8s_A Glycine cleavage system 92.4 0.39 1.3E-05 40.6 7.7 38 237-274 93-130 (192)
25 2f1f_A Acetolactate synthase i 89.7 0.66 2.3E-05 38.8 6.3 49 238-286 4-52 (164)
26 2fgc_A Acetolactate synthase, 89.4 1 3.5E-05 38.7 7.4 47 238-284 30-78 (193)
27 3p96_A Phosphoserine phosphata 89.0 1.1 3.6E-05 42.3 8.0 50 237-286 12-61 (415)
28 2jhe_A Transcription regulator 88.8 0.78 2.7E-05 37.3 6.2 35 239-273 2-36 (190)
29 3nrb_A Formyltetrahydrofolate 87.7 1.5 5E-05 39.9 7.8 50 236-286 6-56 (287)
30 2pc6_A Probable acetolactate s 87.3 0.72 2.5E-05 38.7 5.0 47 238-284 5-53 (165)
31 3obi_A Formyltetrahydrofolate 87.0 1.5 5.1E-05 39.9 7.4 50 236-285 5-56 (288)
32 3n0v_A Formyltetrahydrofolate 86.8 1.6 5.4E-05 39.7 7.4 36 237-272 8-43 (286)
33 3lou_A Formyltetrahydrofolate 86.1 1.7 5.6E-05 39.7 7.2 37 236-272 9-45 (292)
34 3o1l_A Formyltetrahydrofolate 85.6 1.9 6.5E-05 39.6 7.3 49 237-286 22-71 (302)
35 1y7p_A Hypothetical protein AF 84.7 1.5 5.3E-05 38.4 5.9 51 237-288 4-58 (223)
36 2f06_A Conserved hypothetical 72.2 11 0.00038 29.7 7.1 37 239-275 8-44 (144)
37 2f06_A Conserved hypothetical 72.0 12 0.0004 29.6 7.1 44 240-283 75-118 (144)
38 2re1_A Aspartokinase, alpha an 69.8 15 0.00052 29.9 7.6 49 231-281 97-148 (167)
39 2wt7_A Proto-oncogene protein 68.9 14 0.00048 25.5 6.0 46 104-163 1-46 (63)
40 2re1_A Aspartokinase, alpha an 68.2 5.8 0.0002 32.5 4.6 41 231-271 19-60 (167)
41 1cn3_F Fragment of coat protei 67.7 2.8 9.7E-05 23.9 1.7 6 13-18 8-13 (29)
42 2dtj_A Aspartokinase; protein- 66.0 15 0.00052 30.3 6.9 40 231-270 9-49 (178)
43 3he4_B Synzip5; heterodimeric 62.5 14 0.00049 23.1 4.4 26 135-160 5-30 (46)
44 1zme_C Proline utilization tra 55.9 10 0.00035 26.0 3.4 22 140-161 44-65 (70)
45 2oqq_A Transcription factor HY 55.8 7.4 0.00025 24.9 2.3 25 140-164 3-27 (42)
46 1dh3_A Transcription factor CR 55.6 12 0.0004 25.3 3.5 23 140-162 22-44 (55)
47 2l5g_A GPS2 protein, G protein 54.5 28 0.00096 21.6 4.7 31 129-159 4-34 (38)
48 3muj_A Transcription factor CO 50.4 24 0.00082 28.4 5.1 36 110-145 95-133 (138)
49 1pd7_B MAD1; PAH2, SIN3, eukar 50.1 21 0.00072 20.3 3.3 19 129-147 2-20 (26)
50 2dt9_A Aspartokinase; protein- 46.3 48 0.0017 26.7 6.6 40 230-269 88-130 (167)
51 2jee_A YIIU; FTSZ, septum, coi 45.9 27 0.00093 25.6 4.3 28 134-161 14-41 (81)
52 2dt9_A Aspartokinase; protein- 44.1 29 0.00098 28.2 4.9 40 231-270 10-50 (167)
53 1gd2_E Transcription factor PA 43.4 22 0.00075 25.3 3.4 20 140-159 29-48 (70)
54 1rwu_A Hypothetical UPF0250 pr 43.3 44 0.0015 25.7 5.5 49 237-286 36-87 (109)
55 2qmx_A Prephenate dehydratase; 43.1 41 0.0014 30.3 6.1 53 237-289 200-253 (283)
56 1vjl_A Hypothetical protein TM 43.0 1.3E+02 0.0046 24.6 8.8 38 247-284 66-104 (164)
57 2er8_A Regulatory protein Leu3 42.6 13 0.00044 25.8 2.1 20 140-159 49-68 (72)
58 2dtj_A Aspartokinase; protein- 42.6 38 0.0013 27.8 5.4 50 230-281 88-140 (178)
59 3ab4_A Aspartokinase; aspartat 41.3 63 0.0022 30.4 7.4 40 231-270 258-298 (421)
60 4go7_X Aspartokinase; transfer 41.3 26 0.00089 29.9 4.3 54 231-284 29-86 (200)
61 2rrl_A FLIK, flagellar HOOK-le 41.0 60 0.0021 27.0 6.3 48 226-273 100-153 (169)
62 3s1t_A Aspartokinase; ACT doma 38.6 64 0.0022 26.7 6.3 39 231-269 10-49 (181)
63 1jnm_A Proto-oncogene C-JUN; B 37.3 33 0.0011 23.4 3.5 24 139-162 21-44 (62)
64 3luy_A Probable chorismate mut 37.3 1.7E+02 0.0057 26.8 9.3 44 246-289 217-261 (329)
65 3mwb_A Prephenate dehydratase; 36.9 74 0.0025 29.0 6.9 51 238-288 202-254 (313)
66 2dgc_A Protein (GCN4); basic d 36.8 34 0.0012 23.6 3.5 22 140-161 30-51 (63)
67 1p3q_Q VPS9P, vacuolar protein 36.8 33 0.0011 23.1 3.3 24 102-125 3-26 (54)
68 3w03_C DNA repair protein XRCC 35.1 46 0.0016 28.1 4.7 29 133-161 145-173 (184)
69 3s1t_A Aspartokinase; ACT doma 35.0 64 0.0022 26.6 5.7 50 230-281 89-141 (181)
70 1xkm_B Distinctin chain B; por 34.2 50 0.0017 18.3 3.1 19 132-150 3-21 (26)
71 1t2k_D Cyclic-AMP-dependent tr 32.0 46 0.0016 22.5 3.5 22 140-161 22-43 (61)
72 2qmw_A PDT, prephenate dehydra 31.5 70 0.0024 28.5 5.6 51 236-286 185-239 (267)
73 3fx7_A Putative uncharacterize 31.2 53 0.0018 24.7 4.0 22 135-156 65-86 (94)
74 1hwt_C Protein (heme activator 31.2 16 0.00056 25.8 1.1 21 139-159 57-77 (81)
75 2wuj_A Septum site-determining 30.8 53 0.0018 22.1 3.6 28 133-160 27-54 (57)
76 1pyi_A Protein (pyrimidine pat 30.3 38 0.0013 24.6 3.1 20 140-159 48-67 (96)
77 3coq_A Regulatory protein GAL4 27.7 52 0.0018 23.3 3.4 21 140-160 45-65 (89)
78 3ab4_A Aspartokinase; aspartat 27.7 1.6E+02 0.0054 27.5 7.8 49 231-281 338-389 (421)
79 1kd8_B GABH BLL, GCN4 acid bas 27.4 67 0.0023 19.7 3.2 19 142-160 3-21 (36)
80 2cdq_A Aspartokinase; aspartat 26.9 1.5E+02 0.005 28.8 7.5 38 233-270 337-377 (510)
81 3mah_A Aspartokinase; aspartat 26.8 38 0.0013 27.1 2.8 40 231-270 12-54 (157)
82 3q4f_C DNA repair protein XRCC 26.2 79 0.0027 26.6 4.6 29 133-161 154-182 (186)
83 3k5p_A D-3-phosphoglycerate de 25.9 1.2E+02 0.0042 28.7 6.5 57 227-283 333-389 (416)
84 2wq1_A General control protein 25.8 77 0.0026 19.0 3.2 19 142-160 2-20 (33)
85 2dnr_A Synaptojanin-1; RRM dom 24.2 1E+02 0.0035 22.9 4.5 24 248-272 26-49 (91)
86 3c1m_A Probable aspartokinase; 23.7 80 0.0027 30.2 4.9 41 232-272 313-356 (473)
87 3c3g_A Alpha/beta peptide with 23.6 90 0.0031 18.7 3.2 19 142-160 2-20 (33)
88 1ygy_A PGDH, D-3-phosphoglycer 23.3 2.9E+02 0.01 26.6 8.9 52 236-287 453-504 (529)
89 1gmj_A ATPase inhibitor; coile 22.8 2.3E+02 0.0078 20.7 6.3 44 108-160 35-78 (84)
90 2jqq_A Conserved oligomeric go 22.3 50 0.0017 28.1 2.6 45 107-153 52-96 (204)
91 3p8c_D Wiskott-aldrich syndrom 22.3 20 0.00067 32.4 0.2 12 10-21 193-204 (279)
92 2oxj_A Hybrid alpha/beta pepti 22.0 1E+02 0.0034 18.7 3.2 19 142-160 3-21 (34)
93 2akf_A Coronin-1A; coiled coil 21.2 1.3E+02 0.0046 17.5 3.5 18 142-159 8-25 (32)
94 3ra3_B P2F; coiled coil domain 21.1 50 0.0017 18.6 1.6 20 142-161 2-21 (28)
95 3trt_A Vimentin; cytoskeleton, 20.9 2.2E+02 0.0074 19.8 5.6 52 102-159 21-75 (77)
96 1kd8_A GABH AIV, GCN4 acid bas 20.8 72 0.0025 19.5 2.4 17 143-159 4-20 (36)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.71 E-value=2.3e-17 Score=125.36 Aligned_cols=68 Identities=24% Similarity=0.378 Sum_probs=64.1
Q ss_pred chhhhccHHHHHHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 037241 95 SEHEIHIWTERERRKKMRNMFANLHSLLPQLPPKADKSSIVDEAVSYIKTLQQTLRKLQKQKLERLQG 162 (306)
Q Consensus 95 ~~~~~h~~~Er~RR~~~~~~~~~Lr~lvP~~~~k~~k~~iL~~ai~YIk~Lq~~~~~L~~~~~~~~~~ 162 (306)
.+|..|+.+||+||.+||++|.+|++|||....|++|++||.+||+||++|+.+++.|+.+.+.|...
T Consensus 5 ~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~ 72 (82)
T 1am9_A 5 EKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTA 72 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47789999999999999999999999999977899999999999999999999999999999988654
No 2
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.65 E-value=2e-16 Score=119.67 Aligned_cols=68 Identities=25% Similarity=0.412 Sum_probs=63.3
Q ss_pred cchhhhccHHHHHHHHHHHHHHHHHHhcCCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 037241 94 ESEHEIHIWTERERRKKMRNMFANLHSLLPQLP-PKADKSSIVDEAVSYIKTLQQTLRKLQKQKLERLQ 161 (306)
Q Consensus 94 ~~~~~~h~~~Er~RR~~~~~~~~~Lr~lvP~~~-~k~~k~~iL~~ai~YIk~Lq~~~~~L~~~~~~~~~ 161 (306)
..+|..|+.+||+||..||++|..|+++||.++ .|++|++||..||+||++|++++++|+.++++|.+
T Consensus 10 ~~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 10 ADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357899999999999999999999999999874 69999999999999999999999999999988753
No 3
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.65 E-value=3.2e-16 Score=119.36 Aligned_cols=67 Identities=25% Similarity=0.411 Sum_probs=62.1
Q ss_pred hhhhccHHHHHHHHHHHHHHHHHHhcCCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 037241 96 EHEIHIWTERERRKKMRNMFANLHSLLPQLP-PKADKSSIVDEAVSYIKTLQQTLRKLQKQKLERLQG 162 (306)
Q Consensus 96 ~~~~h~~~Er~RR~~~~~~~~~Lr~lvP~~~-~k~~k~~iL~~ai~YIk~Lq~~~~~L~~~~~~~~~~ 162 (306)
+|..|+.+||+||..||++|..|+++||.++ .|++|++||..||+||++|++++++|+.++++|...
T Consensus 2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~ 69 (83)
T 1nkp_B 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQ 69 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999863 799999999999999999999999999999887653
No 4
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.62 E-value=6.8e-16 Score=118.69 Aligned_cols=66 Identities=29% Similarity=0.403 Sum_probs=60.7
Q ss_pred hhhhccHHHHHHHHHHHHHHHHHHhcCCCCC--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 037241 96 EHEIHIWTERERRKKMRNMFANLHSLLPQLP--PKADKSSIVDEAVSYIKTLQQTLRKLQKQKLERLQ 161 (306)
Q Consensus 96 ~~~~h~~~Er~RR~~~~~~~~~Lr~lvP~~~--~k~~k~~iL~~ai~YIk~Lq~~~~~L~~~~~~~~~ 161 (306)
+|..|+.+||+||..||++|..|+++||.++ .|.+|++||.+||+||++|+.+++.|..+++.+..
T Consensus 6 ~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~~ 73 (88)
T 1nkp_A 6 KRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRK 73 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999874 69999999999999999999999998887776643
No 5
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.62 E-value=1.2e-15 Score=115.23 Aligned_cols=65 Identities=26% Similarity=0.305 Sum_probs=60.8
Q ss_pred hhhccHHHHHHHHHHHHHHHHHHhcCCCCC--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 037241 97 HEIHIWTERERRKKMRNMFANLHSLLPQLP--PKADKSSIVDEAVSYIKTLQQTLRKLQKQKLERLQ 161 (306)
Q Consensus 97 ~~~h~~~Er~RR~~~~~~~~~Lr~lvP~~~--~k~~k~~iL~~ai~YIk~Lq~~~~~L~~~~~~~~~ 161 (306)
|..||..||+||..||++|..|+++||.++ .|.+|++||..|++||++|++++++|..+++.|..
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~ 68 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQR 68 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999863 78999999999999999999999999999988764
No 6
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.60 E-value=1.1e-15 Score=112.42 Aligned_cols=59 Identities=20% Similarity=0.397 Sum_probs=55.4
Q ss_pred chhhhccHHHHHHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 037241 95 SEHEIHIWTERERRKKMRNMFANLHSLLPQLPPKADKSSIVDEAVSYIKTLQQTLRKLQ 153 (306)
Q Consensus 95 ~~~~~h~~~Er~RR~~~~~~~~~Lr~lvP~~~~k~~k~~iL~~ai~YIk~Lq~~~~~L~ 153 (306)
.+|..|+.+||+||++||++|.+|++|||....|+||++||..||+||++||+++.-|+
T Consensus 7 ~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 7 AKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 57899999999999999999999999999876899999999999999999999988765
No 7
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.57 E-value=8.8e-16 Score=110.81 Aligned_cols=54 Identities=31% Similarity=0.481 Sum_probs=49.3
Q ss_pred hhhhccHHHHHHHHHHHHHHHHHHhcCCCC------CCCCChhhHHHHHHHHHHHHHHHH
Q 037241 96 EHEIHIWTERERRKKMRNMFANLHSLLPQL------PPKADKSSIVDEAVSYIKTLQQTL 149 (306)
Q Consensus 96 ~~~~h~~~Er~RR~~~~~~~~~Lr~lvP~~------~~k~~k~~iL~~ai~YIk~Lq~~~ 149 (306)
+|..|+.+||+||++||.+|..|++|||.+ ..|.+|++||+.||+||++||+++
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999999999965 257889999999999999999865
No 8
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.55 E-value=9.4e-16 Score=111.43 Aligned_cols=56 Identities=29% Similarity=0.460 Sum_probs=51.0
Q ss_pred chhhhccHHHHHHHHHHHHHHHHHHhcCCCCC-----CCCChhhHHHHHHHHHHHHHHHHH
Q 037241 95 SEHEIHIWTERERRKKMRNMFANLHSLLPQLP-----PKADKSSIVDEAVSYIKTLQQTLR 150 (306)
Q Consensus 95 ~~~~~h~~~Er~RR~~~~~~~~~Lr~lvP~~~-----~k~~k~~iL~~ai~YIk~Lq~~~~ 150 (306)
.++..|+.+||+||.+||++|..|++|||.+. .|++|++||.+||+||++||++++
T Consensus 4 ~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~~ 64 (65)
T 1an4_A 4 KRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64 (65)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 46789999999999999999999999999885 278999999999999999998653
No 9
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.55 E-value=5.8e-15 Score=119.49 Aligned_cols=65 Identities=23% Similarity=0.411 Sum_probs=53.8
Q ss_pred cchhhhccHHHHHHHHHHHHHHHHHHhcCCCCC---CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037241 94 ESEHEIHIWTERERRKKMRNMFANLHSLLPQLP---PKADKSSIVDEAVSYIKTLQQTLRKLQKQKLE 158 (306)
Q Consensus 94 ~~~~~~h~~~Er~RR~~~~~~~~~Lr~lvP~~~---~k~~k~~iL~~ai~YIk~Lq~~~~~L~~~~~~ 158 (306)
..++..|+.+||+||.+||+.|.+|++|||.+. .|++|++||.+||+||++||++++.|+.+..+
T Consensus 25 ~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~~ 92 (118)
T 4ati_A 25 RQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENR 92 (118)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347789999999999999999999999999873 48899999999999999999999999876443
No 10
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.48 E-value=1.9e-14 Score=107.50 Aligned_cols=59 Identities=31% Similarity=0.398 Sum_probs=49.0
Q ss_pred chhhhccHHHHHHHHHHHHHHHHHHhcCCC-C-CCCC-ChhhHHHHHHHHHHHHHHHHHHHH
Q 037241 95 SEHEIHIWTERERRKKMRNMFANLHSLLPQ-L-PPKA-DKSSIVDEAVSYIKTLQQTLRKLQ 153 (306)
Q Consensus 95 ~~~~~h~~~Er~RR~~~~~~~~~Lr~lvP~-~-~~k~-~k~~iL~~ai~YIk~Lq~~~~~L~ 153 (306)
.+|..|+..||+||..||++|.+|+.+||. . ..|. +|++||..||+||++||+++++++
T Consensus 4 ~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~ 65 (76)
T 3u5v_A 4 DKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERN 65 (76)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 367899999999999999999999999995 2 2555 799999999999999999998764
No 11
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.47 E-value=1.1e-14 Score=107.86 Aligned_cols=54 Identities=35% Similarity=0.487 Sum_probs=49.6
Q ss_pred cchhhhccHHHHHHHHHHHHHHHHHHhcCCCCC---CCCChhhHHHHHHHHHHHHHH
Q 037241 94 ESEHEIHIWTERERRKKMRNMFANLHSLLPQLP---PKADKSSIVDEAVSYIKTLQQ 147 (306)
Q Consensus 94 ~~~~~~h~~~Er~RR~~~~~~~~~Lr~lvP~~~---~k~~k~~iL~~ai~YIk~Lq~ 147 (306)
..+|..|+.+||+||++||+.|.+|++|||.+. .|+||++||+.||+||+.|+.
T Consensus 7 ~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 7 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 357899999999999999999999999999753 799999999999999999974
No 12
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.41 E-value=2.9e-13 Score=96.55 Aligned_cols=55 Identities=25% Similarity=0.300 Sum_probs=51.0
Q ss_pred hhhhccHHHHHHHHHHHHHHHHHHhcCCCCC--CCCChhhHHHHHHHHHHHHHHHHH
Q 037241 96 EHEIHIWTERERRKKMRNMFANLHSLLPQLP--PKADKSSIVDEAVSYIKTLQQTLR 150 (306)
Q Consensus 96 ~~~~h~~~Er~RR~~~~~~~~~Lr~lvP~~~--~k~~k~~iL~~ai~YIk~Lq~~~~ 150 (306)
+|..||..||+|+..||+.|..||.+||..+ .|.+|+.+|..||+||.+|++.++
T Consensus 2 rR~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 2 RRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 5788999999999999999999999999874 799999999999999999998764
No 13
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.39 E-value=3.1e-13 Score=98.74 Aligned_cols=56 Identities=29% Similarity=0.418 Sum_probs=51.6
Q ss_pred chhhhccHHHHHHHHHHHHHHHHHHhcCCCCC-CCCChhhHHHHHHHHHHHHHHHHH
Q 037241 95 SEHEIHIWTERERRKKMRNMFANLHSLLPQLP-PKADKSSIVDEAVSYIKTLQQTLR 150 (306)
Q Consensus 95 ~~~~~h~~~Er~RR~~~~~~~~~Lr~lvP~~~-~k~~k~~iL~~ai~YIk~Lq~~~~ 150 (306)
.+|..|+..||+|+..||+.|..||.+||..+ .|++|+.||..||+||.+|++.++
T Consensus 11 ~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L~ 67 (68)
T 1mdy_A 11 DRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 47889999999999999999999999999864 799999999999999999998653
No 14
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.06 E-value=3.1e-11 Score=87.18 Aligned_cols=47 Identities=21% Similarity=0.386 Sum_probs=43.1
Q ss_pred cHHHHHHHHHHHHHHHHHHhcCCCCC--CCCChhhHHHHHHHHHHHHHH
Q 037241 101 IWTERERRKKMRNMFANLHSLLPQLP--PKADKSSIVDEAVSYIKTLQQ 147 (306)
Q Consensus 101 ~~~Er~RR~~~~~~~~~Lr~lvP~~~--~k~~k~~iL~~ai~YIk~Lq~ 147 (306)
+..||+|+..||+.|..||.+||..+ .|++|..+|..||+||..||.
T Consensus 19 ~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 19 AEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp BCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 46688899999999999999999875 799999999999999999984
No 15
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.88 E-value=1.5e-09 Score=102.83 Aligned_cols=54 Identities=22% Similarity=0.450 Sum_probs=43.0
Q ss_pred chhhhccHHHHHHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHH
Q 037241 95 SEHEIHIWTERERRKKMRNMFANLHSLLPQLPPKADKSSIVDEAVSYIKTLQQT 148 (306)
Q Consensus 95 ~~~~~h~~~Er~RR~~~~~~~~~Lr~lvP~~~~k~~k~~iL~~ai~YIk~Lq~~ 148 (306)
.+|..|+.+||+||++||..|.+|++|||....|+||++||..||.||+.|+..
T Consensus 11 ~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 11 AKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhh
Confidence 467899999999999999999999999995458999999999999999999764
No 16
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.75 E-value=2.4e-08 Score=74.86 Aligned_cols=53 Identities=21% Similarity=0.390 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhcCCCCC---CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037241 108 RKKMRNMFANLHSLLPQLP---PKADKSSIVDEAVSYIKTLQQTLRKLQKQKLERL 160 (306)
Q Consensus 108 R~~~~~~~~~Lr~lvP~~~---~k~~k~~iL~~ai~YIk~Lq~~~~~L~~~~~~~~ 160 (306)
|..||++|.+|..|||.+. .|.+|.+||..||+||++||+.++.+..+..++.
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e~r~k 59 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLENRQK 59 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999753 6889999999999999999999998887766543
No 17
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.72 E-value=8.4e-09 Score=98.80 Aligned_cols=55 Identities=35% Similarity=0.490 Sum_probs=49.4
Q ss_pred cchhhhccHHHHHHHHHHHHHHHHHHhcCCCC---CCCCChhhHHHHHHHHHHHHHHH
Q 037241 94 ESEHEIHIWTERERRKKMRNMFANLHSLLPQL---PPKADKSSIVDEAVSYIKTLQQT 148 (306)
Q Consensus 94 ~~~~~~h~~~Er~RR~~~~~~~~~Lr~lvP~~---~~k~~k~~iL~~ai~YIk~Lq~~ 148 (306)
..+|..|+.+||+||++||..|.+|+.|||.. ..|+||++||..||.||+.|+..
T Consensus 11 ~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 11 KNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred hhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcc
Confidence 34789999999999999999999999999942 28999999999999999999843
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=98.69 E-value=3.2e-08 Score=76.48 Aligned_cols=50 Identities=26% Similarity=0.426 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCC--CCCChhhHHHHHHHHHHHHHHHHHH
Q 037241 102 WTERERRKKMRNMFANLHSLLPQLP--PKADKSSIVDEAVSYIKTLQQTLRK 151 (306)
Q Consensus 102 ~~Er~RR~~~~~~~~~Lr~lvP~~~--~k~~k~~iL~~ai~YIk~Lq~~~~~ 151 (306)
..||.|-..||+.|..||.+||..+ .|++|..+|..||+||.+|++-++.
T Consensus 31 ~~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 31 DDPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 4457888999999999999999874 7999999999999999999987654
No 19
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=96.52 E-value=0.016 Score=43.04 Aligned_cols=51 Identities=12% Similarity=0.102 Sum_probs=42.3
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEEEEEEEcC
Q 037241 237 EAHISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYMIQVHVNG 287 (306)
Q Consensus 237 ~~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~i~akv~~ 287 (306)
.+.|.|.|+.+||+|.+|..+|-++|++|++.+.....+..+..|.+.+.+
T Consensus 5 ~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~~ 55 (91)
T 1zpv_A 5 KAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDE 55 (91)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESS
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeCC
Confidence 357899999999999999999999999999999988776544446666553
No 20
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=95.97 E-value=0.025 Score=48.55 Aligned_cols=50 Identities=14% Similarity=0.218 Sum_probs=42.8
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEEEEEEEc
Q 037241 237 EAHISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYMIQVHVN 286 (306)
Q Consensus 237 ~~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~i~akv~ 286 (306)
.+.|.|.|+.|+|++..|..+|.++|++|+.+++.+..+.++..+.+...
T Consensus 5 ~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~ 54 (195)
T 2nyi_A 5 SFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLN 54 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES
T ss_pred EEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEec
Confidence 46799999999999999999999999999999999888776555655543
No 21
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=95.77 E-value=0.034 Score=47.31 Aligned_cols=49 Identities=8% Similarity=0.210 Sum_probs=42.5
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEEEEEEE
Q 037241 237 EAHISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYMIQVHV 285 (306)
Q Consensus 237 ~~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~i~akv 285 (306)
.+.|.|.|+.+||++..|..+|.++|++|+.+++....+.++..|.+..
T Consensus 6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~ 54 (192)
T 1u8s_A 6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISG 54 (192)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEec
Confidence 4679999999999999999999999999999999987776666665554
No 22
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=95.61 E-value=0.047 Score=39.81 Aligned_cols=50 Identities=20% Similarity=0.205 Sum_probs=40.4
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEEEEEEEcC
Q 037241 238 AHISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYMIQVHVNG 287 (306)
Q Consensus 238 ~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~i~akv~~ 287 (306)
+.|.|.+..++|+|.+|..+|.+.+++|.+.++...++.....|.+.+..
T Consensus 6 ~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~~ 55 (88)
T 2ko1_A 6 AGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVKN 55 (88)
T ss_dssp EEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEESS
T ss_pred EEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEECC
Confidence 46888999999999999999999999999999987666333346666543
No 23
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=93.98 E-value=0.15 Score=43.56 Aligned_cols=38 Identities=16% Similarity=0.298 Sum_probs=35.3
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeC
Q 037241 237 EAHISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDL 274 (306)
Q Consensus 237 ~~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~ 274 (306)
.+.|.|.|+.++|++..|..+|-++|++|+.++..+..
T Consensus 93 ~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~ 130 (195)
T 2nyi_A 93 EYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLP 130 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred EEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecc
Confidence 46799999999999999999999999999999998765
No 24
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=92.37 E-value=0.39 Score=40.57 Aligned_cols=38 Identities=13% Similarity=0.157 Sum_probs=34.5
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeC
Q 037241 237 EAHISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDL 274 (306)
Q Consensus 237 ~~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~ 274 (306)
.+.|.|.|+.++|++..|..+|-+++++|..+...+..
T Consensus 93 ~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~ 130 (192)
T 1u8s_A 93 TVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTIS 130 (192)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred eEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhccc
Confidence 35689999999999999999999999999999988764
No 25
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=89.71 E-value=0.66 Score=38.83 Aligned_cols=49 Identities=10% Similarity=0.150 Sum_probs=37.8
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEEEEEEEc
Q 037241 238 AHISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYMIQVHVN 286 (306)
Q Consensus 238 ~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~i~akv~ 286 (306)
..|.|.+..++|+|.+|..+|.+.|++|.+.++....+.-+..|+..+.
T Consensus 4 ~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~ 52 (164)
T 2f1f_A 4 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV 52 (164)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe
Confidence 4688899999999999999999999999999997655422333333443
No 26
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=89.40 E-value=1 Score=38.73 Aligned_cols=47 Identities=19% Similarity=0.316 Sum_probs=37.6
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCC--eEEEEEEEE
Q 037241 238 AHISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLT--RRMYMIQVH 284 (306)
Q Consensus 238 ~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~--~v~~~i~ak 284 (306)
..|.|..+.+||.|.+|..+|...|++|.+.++....+ ....+|.+.
T Consensus 30 ~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~ 78 (193)
T 2fgc_A 30 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVK 78 (193)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEE
T ss_pred EEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEE
Confidence 57888899999999999999999999999999975444 333445443
No 27
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=89.04 E-value=1.1 Score=42.30 Aligned_cols=50 Identities=20% Similarity=0.296 Sum_probs=42.6
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEEEEEEEc
Q 037241 237 EAHISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYMIQVHVN 286 (306)
Q Consensus 237 ~~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~i~akv~ 286 (306)
.+.|.|.|+.|+|+...|...|-++|.+|+.++-....+.++-.+.+.+.
T Consensus 12 ~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~ 61 (415)
T 3p96_A 12 SVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCP 61 (415)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEEC
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEec
Confidence 46799999999999999999999999999999988877765555666554
No 28
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=88.82 E-value=0.78 Score=37.34 Aligned_cols=35 Identities=9% Similarity=0.199 Sum_probs=32.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEee
Q 037241 239 HISICSPKKPGMFSTICYVLEKHKIEVISAQVSSD 273 (306)
Q Consensus 239 ~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~ 273 (306)
.|+|.|..|+|+|.+|+.+|.+.++++..+++...
T Consensus 2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~ 36 (190)
T 2jhe_A 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI 36 (190)
T ss_dssp EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT
T ss_pred EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC
Confidence 47899999999999999999999999999999765
No 29
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=87.72 E-value=1.5 Score=39.95 Aligned_cols=50 Identities=20% Similarity=0.409 Sum_probs=38.9
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEee-CCeEEEEEEEEEc
Q 037241 236 DEAHISICSPKKPGMFSTICYVLEKHKIEVISAQVSSD-LTRRMYMIQVHVN 286 (306)
Q Consensus 236 ~~~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~-~~~v~~~i~akv~ 286 (306)
..+.|.|.|+.++|+...|...|-++|++|+.++-... ....|++ ++.+.
T Consensus 6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffm-r~~~~ 56 (287)
T 3nrb_A 6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFM-RVSVE 56 (287)
T ss_dssp TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEE-EEEEE
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEE-EEEEE
Confidence 34679999999999999999999999999999988643 3344444 34443
No 30
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=87.31 E-value=0.72 Score=38.67 Aligned_cols=47 Identities=13% Similarity=0.137 Sum_probs=37.5
Q ss_pred EEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCC--eEEEEEEEE
Q 037241 238 AHISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLT--RRMYMIQVH 284 (306)
Q Consensus 238 ~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~--~v~~~i~ak 284 (306)
..|.|....++|+|.+|..+|...|++|.+.++....+ ....+|.+.
T Consensus 5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~ 53 (165)
T 2pc6_A 5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTN 53 (165)
T ss_dssp EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEE
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEe
Confidence 46888999999999999999999999999999976553 333445444
No 31
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=87.00 E-value=1.5 Score=39.92 Aligned_cols=50 Identities=16% Similarity=0.375 Sum_probs=38.9
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEee-CCeEEEE-EEEEE
Q 037241 236 DEAHISICSPKKPGMFSTICYVLEKHKIEVISAQVSSD-LTRRMYM-IQVHV 285 (306)
Q Consensus 236 ~~~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~-~~~v~~~-i~akv 285 (306)
..+.|.|.|+.|+|+...|...|-++|++|+.++-.+. ....|++ +.+.+
T Consensus 5 ~~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~ 56 (288)
T 3obi_A 5 HQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNA 56 (288)
T ss_dssp CEEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEE
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEc
Confidence 34679999999999999999999999999999987642 2334444 44444
No 32
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=86.85 E-value=1.6 Score=39.74 Aligned_cols=36 Identities=11% Similarity=0.061 Sum_probs=33.5
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEe
Q 037241 237 EAHISICSPKKPGMFSTICYVLEKHKIEVISAQVSS 272 (306)
Q Consensus 237 ~~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~ 272 (306)
.+.|.|.|+.++|+...|...|-++|++|+.++-.+
T Consensus 8 ~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~ 43 (286)
T 3n0v_A 8 TWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFD 43 (286)
T ss_dssp CEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred cEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeec
Confidence 467999999999999999999999999999999874
No 33
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=86.13 E-value=1.7 Score=39.74 Aligned_cols=37 Identities=16% Similarity=0.317 Sum_probs=33.9
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEe
Q 037241 236 DEAHISICSPKKPGMFSTICYVLEKHKIEVISAQVSS 272 (306)
Q Consensus 236 ~~~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~ 272 (306)
..+.|.|.|+.|+|+...|...|-++|++|+.++-..
T Consensus 9 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~ 45 (292)
T 3lou_A 9 HQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFD 45 (292)
T ss_dssp CEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEe
Confidence 3567999999999999999999999999999999875
No 34
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=85.63 E-value=1.9 Score=39.56 Aligned_cols=49 Identities=18% Similarity=0.329 Sum_probs=38.8
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeC-CeEEEEEEEEEc
Q 037241 237 EAHISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDL-TRRMYMIQVHVN 286 (306)
Q Consensus 237 ~~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~-~~v~~~i~akv~ 286 (306)
.+.|.|.|+.|+|+...|...|-++|++|+.++-.... ...|++ ++.+.
T Consensus 22 ~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfM-r~~~~ 71 (302)
T 3o1l_A 22 TFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFM-RHEIR 71 (302)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEE-EEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEE-EEEEe
Confidence 46799999999999999999999999999999987642 334443 34443
No 35
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=84.70 E-value=1.5 Score=38.38 Aligned_cols=51 Identities=14% Similarity=0.172 Sum_probs=36.6
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeC----CeEEEEEEEEEcCc
Q 037241 237 EAHISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDL----TRRMYMIQVHVNGA 288 (306)
Q Consensus 237 ~~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~----~~v~~~i~akv~~~ 288 (306)
.+.|.|.+..|+|+|.+|+.+|-+++.+|.+.+..... +.. ..++.++...
T Consensus 4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~-A~I~IEV~d~ 58 (223)
T 1y7p_A 4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGK-ALIYFEIEGG 58 (223)
T ss_dssp CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTE-EEEEEEECSS
T ss_pred eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCE-EEEEEEECCC
Confidence 35788999999999999999999999999999998865 433 3333666643
No 36
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=72.20 E-value=11 Score=29.68 Aligned_cols=37 Identities=22% Similarity=0.353 Sum_probs=31.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCC
Q 037241 239 HISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLT 275 (306)
Q Consensus 239 ~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~ 275 (306)
.|.|..+.+||.|.+|+.+|.+.|++|....+....+
T Consensus 8 ~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~ 44 (144)
T 2f06_A 8 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAENAD 44 (144)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSS
T ss_pred EEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCC
Confidence 5777889999999999999999999998877654434
No 37
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=71.98 E-value=12 Score=29.56 Aligned_cols=44 Identities=14% Similarity=0.181 Sum_probs=32.3
Q ss_pred EEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEEEEE
Q 037241 240 ISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYMIQV 283 (306)
Q Consensus 240 I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~i~a 283 (306)
|-+..+.+||.+.+|+.+|.+.|+.|...-++..+....+.|..
T Consensus 75 v~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~ 118 (144)
T 2f06_A 75 VGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRP 118 (144)
T ss_dssp EEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEE
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEe
Confidence 55567799999999999999999999665544234555555533
No 38
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=69.82 E-value=15 Score=29.93 Aligned_cols=49 Identities=12% Similarity=0.122 Sum_probs=36.1
Q ss_pred EEEeCCeEEEEEEcCC---CCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEEE
Q 037241 231 LNICGDEAHISICSPK---KPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYMI 281 (306)
Q Consensus 231 V~i~g~~~~I~I~c~~---r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~i 281 (306)
+.+..+-+.|.|.... ++|++.+++.+|.+.++.|...+ +....+.+.|
T Consensus 97 i~~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~is--tse~~is~vv 148 (167)
T 2re1_A 97 IDGDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMIS--TSEIKVSVLI 148 (167)
T ss_dssp EEEESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEE--ECSSEEEEEE
T ss_pred EEecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEE--cccCEEEEEE
Confidence 4455566678887654 89999999999999999998854 4455554444
No 39
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=68.93 E-value=14 Score=25.51 Aligned_cols=46 Identities=22% Similarity=0.269 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 037241 104 ERERRKKMRNMFANLHSLLPQLPPKADKSSIVDEAVSYIKTLQQTLRKLQKQKLERLQGV 163 (306)
Q Consensus 104 Er~RR~~~~~~~~~Lr~lvP~~~~k~~k~~iL~~ai~YIk~Lq~~~~~L~~~~~~~~~~~ 163 (306)
||++|.....+.++.++= ..-..||..|+.+++.|+.+...|...+
T Consensus 1 Ekr~rrrerNR~AA~rcR--------------~rKk~~~~~Le~~v~~L~~~n~~L~~ei 46 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCR--------------NRRRELTDTLQAETDQLEDEKSALQTEI 46 (63)
T ss_dssp CHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666651 2234778888888888888777765433
No 40
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=68.25 E-value=5.8 Score=32.55 Aligned_cols=41 Identities=24% Similarity=0.304 Sum_probs=33.1
Q ss_pred EEEeCCeEEEEEE-cCCCCChHHHHHHHHHhCCCEEEEEEEE
Q 037241 231 LNICGDEAHISIC-SPKKPGMFSTICYVLEKHKIEVISAQVS 271 (306)
Q Consensus 231 V~i~g~~~~I~I~-c~~r~glL~~Il~aLe~l~LdVvsa~is 271 (306)
|....+.++|.|. .+.++|.+.+|+.+|.++++.|.....+
T Consensus 19 Ia~~~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s 60 (167)
T 2re1_A 19 IAFDKNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQN 60 (167)
T ss_dssp EEEECCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC
T ss_pred EEecCCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcC
Confidence 4556677788888 5789999999999999999888776543
No 41
>1cn3_F Fragment of coat protein VP2; viral coat protein VP1, viral coat protein VP2, viral entry, viral protein; 2.20A {Polyomavirus}
Probab=67.72 E-value=2.8 Score=23.89 Aligned_cols=6 Identities=33% Similarity=0.639 Sum_probs=2.2
Q ss_pred CCCCCc
Q 037241 13 GGLLHE 18 (306)
Q Consensus 13 ~~~~~~ 18 (306)
|--.|.
T Consensus 8 gaashq 13 (29)
T 1cn3_F 8 GAASHQ 13 (29)
T ss_dssp TTTCCC
T ss_pred cccccc
Confidence 333343
No 42
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=66.04 E-value=15 Score=30.32 Aligned_cols=40 Identities=18% Similarity=0.240 Sum_probs=30.5
Q ss_pred EEEeCCeEEEEEE-cCCCCChHHHHHHHHHhCCCEEEEEEE
Q 037241 231 LNICGDEAHISIC-SPKKPGMFSTICYVLEKHKIEVISAQV 270 (306)
Q Consensus 231 V~i~g~~~~I~I~-c~~r~glL~~Il~aLe~l~LdVvsa~i 270 (306)
|....+.++|.|. .+.++|.+.+|+..|.+.++.|.....
T Consensus 9 Ia~~~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~ 49 (178)
T 2dtj_A 9 VATDKSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQ 49 (178)
T ss_dssp EEEECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEE
T ss_pred EEecCCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEc
Confidence 4455677788884 578899999999999999955555443
No 43
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=62.47 E-value=14 Score=23.10 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037241 135 VDEAVSYIKTLQQTLRKLQKQKLERL 160 (306)
Q Consensus 135 L~~ai~YIk~Lq~~~~~L~~~~~~~~ 160 (306)
+.+--+||+.|+++..+|..-++.+.
T Consensus 5 vkelknyiqeleernaelknlkehlk 30 (46)
T 3he4_B 5 VKELKNYIQELEERNAELKNLKEHLK 30 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHhHHHHHH
Confidence 45667899999999999998877664
No 44
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=55.90 E-value=10 Score=26.03 Aligned_cols=22 Identities=18% Similarity=0.300 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 037241 140 SYIKTLQQTLRKLQKQKLERLQ 161 (306)
Q Consensus 140 ~YIk~Lq~~~~~L~~~~~~~~~ 161 (306)
.||..|+++++.|+..+..|..
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~~ 65 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLKA 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999887753
No 45
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=55.75 E-value=7.4 Score=24.87 Aligned_cols=25 Identities=16% Similarity=0.425 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccc
Q 037241 140 SYIKTLQQTLRKLQKQKLERLQGVA 164 (306)
Q Consensus 140 ~YIk~Lq~~~~~L~~~~~~~~~~~~ 164 (306)
.|+-.|+.++++|+....+|...++
T Consensus 3 aYl~eLE~r~k~le~~naeLEervs 27 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEERLS 27 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4888999999999888888765554
No 46
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=55.59 E-value=12 Score=25.31 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Q 037241 140 SYIKTLQQTLRKLQKQKLERLQG 162 (306)
Q Consensus 140 ~YIk~Lq~~~~~L~~~~~~~~~~ 162 (306)
.||..|+.+|..|+.+...|...
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~ 44 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEE 44 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999888877643
No 47
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=54.52 E-value=28 Score=21.61 Aligned_cols=31 Identities=23% Similarity=0.288 Sum_probs=26.6
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037241 129 ADKSSIVDEAVSYIKTLQQTLRKLQKQKLER 159 (306)
Q Consensus 129 ~~k~~iL~~ai~YIk~Lq~~~~~L~~~~~~~ 159 (306)
+.-...|+++-+-|..|+.+++.|+.++-+|
T Consensus 4 ~ee~mTLeEtkeQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 4 MEERMSLEETKEQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446779999999999999999999998765
No 48
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=50.35 E-value=24 Score=28.45 Aligned_cols=36 Identities=19% Similarity=0.457 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhcCCCCC---CCCChhhHHHHHHHHHHHH
Q 037241 110 KMRNMFANLHSLLPQLP---PKADKSSIVDEAVSYIKTL 145 (306)
Q Consensus 110 ~~~~~~~~Lr~lvP~~~---~k~~k~~iL~~ai~YIk~L 145 (306)
-|.-.|..|..+||-.+ .+.-|--||..|.++++.|
T Consensus 95 tId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 95 TIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEAL 133 (138)
T ss_dssp CHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHH
Confidence 36778999999999764 6788999999999998876
No 49
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=50.08 E-value=21 Score=20.34 Aligned_cols=19 Identities=16% Similarity=0.267 Sum_probs=15.2
Q ss_pred CChhhHHHHHHHHHHHHHH
Q 037241 129 ADKSSIVDEAVSYIKTLQQ 147 (306)
Q Consensus 129 ~~k~~iL~~ai~YIk~Lq~ 147 (306)
+....+|-+|.+|+...++
T Consensus 2 ~~nvq~LLeAAeyLErrEr 20 (26)
T 1pd7_B 2 RMNIQMLLEAADYLERRER 20 (26)
T ss_dssp CCSTHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 4567889999999987665
No 50
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=46.30 E-value=48 Score=26.74 Aligned_cols=40 Identities=13% Similarity=0.081 Sum_probs=31.9
Q ss_pred EEEEeCCeEEEEEEcCC---CCChHHHHHHHHHhCCCEEEEEE
Q 037241 230 VLNICGDEAHISICSPK---KPGMFSTICYVLEKHKIEVISAQ 269 (306)
Q Consensus 230 ~V~i~g~~~~I~I~c~~---r~glL~~Il~aLe~l~LdVvsa~ 269 (306)
.+.+..+-+.|.|.... +||++.+++.+|.+.+++|.-.+
T Consensus 88 ~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is 130 (167)
T 2dt9_A 88 EAILRPDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIA 130 (167)
T ss_dssp EEEEECSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEE
T ss_pred cEEEeCCEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEE
Confidence 55666677778887653 89999999999999999995554
No 51
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=45.93 E-value=27 Score=25.57 Aligned_cols=28 Identities=25% Similarity=0.304 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 037241 134 IVDEAVSYIKTLQQTLRKLQKQKLERLQ 161 (306)
Q Consensus 134 iL~~ai~YIk~Lq~~~~~L~~~~~~~~~ 161 (306)
=+..||+-|.-||..+++|+.++..+..
T Consensus 14 KIq~avdtI~lLqmEieELKekN~~L~~ 41 (81)
T 2jee_A 14 KVQQAIDTITLLQMEIEELKEKNNSLSQ 41 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788999999999999999988877643
No 52
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=44.13 E-value=29 Score=28.18 Aligned_cols=40 Identities=23% Similarity=0.339 Sum_probs=30.5
Q ss_pred EEEeCCeEEEEEEc-CCCCChHHHHHHHHHhCCCEEEEEEE
Q 037241 231 LNICGDEAHISICS-PKKPGMFSTICYVLEKHKIEVISAQV 270 (306)
Q Consensus 231 V~i~g~~~~I~I~c-~~r~glL~~Il~aLe~l~LdVvsa~i 270 (306)
|....+.+.|.|.. +.++|.+.+|+.+|.+.++.|...+.
T Consensus 10 Ia~~~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q 50 (167)
T 2dt9_A 10 VALDLDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQ 50 (167)
T ss_dssp EEEECSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEB
T ss_pred EEEeCCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEc
Confidence 44556666777764 67899999999999999888776554
No 53
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=43.40 E-value=22 Score=25.28 Aligned_cols=20 Identities=15% Similarity=0.237 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 037241 140 SYIKTLQQTLRKLQKQKLER 159 (306)
Q Consensus 140 ~YIk~Lq~~~~~L~~~~~~~ 159 (306)
.||+.|+.+|.+|+.....+
T Consensus 29 ~~i~~LE~~v~~le~~~~~l 48 (70)
T 1gd2_E 29 DHLKALETQVVTLKELHSST 48 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777655543
No 54
>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1
Probab=43.26 E-value=44 Score=25.71 Aligned_cols=49 Identities=12% Similarity=0.181 Sum_probs=35.5
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhC---CCEEEEEEEEeeCCeEEEEEEEEEc
Q 037241 237 EAHISICSPKKPGMFSTICYVLEKH---KIEVISAQVSSDLTRRMYMIQVHVN 286 (306)
Q Consensus 237 ~~~I~I~c~~r~glL~~Il~aLe~l---~LdVvsa~is~~~~~v~~~i~akv~ 286 (306)
++.|+|.....+++...|.++++.+ ..++ ...-|..+..+-++|.+.|.
T Consensus 36 ~y~~KvIG~a~~~~~~~V~~vv~~~~p~d~~~-~~r~Ss~GkY~Svtv~v~v~ 87 (109)
T 1rwu_A 36 PFTYKVMGQALPELVDQVVEVVQRHAPGDYTP-TVKPSSKGNYHSVSITINAT 87 (109)
T ss_dssp CEEEEEEEECCTTHHHHHHHHHHHHSSSCCCE-EEEESSCSSEEEEEEEECCS
T ss_pred CceEEEEEECcHHHHHHHHHHHHHhCCCCCCc-eecCCCCCeEEEEEEEEEEC
Confidence 4568888888899999999999988 6776 55666655555555554443
No 55
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=43.12 E-value=41 Score=30.29 Aligned_cols=53 Identities=11% Similarity=0.189 Sum_probs=40.7
Q ss_pred eEEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCCe-EEEEEEEEEcCcc
Q 037241 237 EAHISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLTR-RMYMIQVHVNGAS 289 (306)
Q Consensus 237 ~~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~~-v~~~i~akv~~~~ 289 (306)
...|-+..+.+||.|.++|..|...||+.....+-...+. --|.|.+.+++..
T Consensus 200 ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~eg~~ 253 (283)
T 2qmx_A 200 KTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFIGHR 253 (283)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEESCT
T ss_pred eEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEecCC
Confidence 3345555568999999999999999999999998876543 4466777777543
No 56
>1vjl_A Hypothetical protein TM0160; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.90A {Thermotoga maritima} SCOP: d.257.1.1 PDB: 1sj5_A
Probab=42.96 E-value=1.3e+02 Score=24.65 Aligned_cols=38 Identities=18% Similarity=0.217 Sum_probs=29.5
Q ss_pred CCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEE-EEEE
Q 037241 247 KPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYM-IQVH 284 (306)
Q Consensus 247 r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~-i~ak 284 (306)
||-..-=+.++|+.++..|..+.|+...+.+||. |..+
T Consensus 66 RPlThDLl~~il~~lg~~v~~V~I~~l~dgtfyA~L~l~ 104 (164)
T 1vjl_A 66 RPLTHDLLLSVLESLEARVDKVIIHSLKDNTFYATLVIR 104 (164)
T ss_dssp SCCHHHHHHHHHHHTTEEEEEEEEEEEETTEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHcCCEEEEEEEEEeECCEEEEEEEEe
Confidence 5543333447889999999999999988888888 7776
No 57
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=42.63 E-value=13 Score=25.75 Aligned_cols=20 Identities=5% Similarity=0.202 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 037241 140 SYIKTLQQTLRKLQKQKLER 159 (306)
Q Consensus 140 ~YIk~Lq~~~~~L~~~~~~~ 159 (306)
.||..|+++++.|+..+..+
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999888754
No 58
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=42.62 E-value=38 Score=27.83 Aligned_cols=50 Identities=12% Similarity=0.169 Sum_probs=36.0
Q ss_pred EEEEeCCeEEEEEEcC---CCCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEEE
Q 037241 230 VLNICGDEAHISICSP---KKPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYMI 281 (306)
Q Consensus 230 ~V~i~g~~~~I~I~c~---~r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~i 281 (306)
.+.+..+-+.|.|... ..+|++.+++.+|.+.+++|.-.+ +....+.+.|
T Consensus 88 ~v~~~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~is--tSe~~Is~vV 140 (178)
T 2dtj_A 88 NVLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS--TSEIRISVLI 140 (178)
T ss_dssp EEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE--EETTEEEEEE
T ss_pred eEEEeCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEE--cCCCeEEEEE
Confidence 3556677777887754 578999999999999999997754 3344444444
No 59
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=41.35 E-value=63 Score=30.37 Aligned_cols=40 Identities=18% Similarity=0.240 Sum_probs=33.3
Q ss_pred EEEeCCeEEEEEE-cCCCCChHHHHHHHHHhCCCEEEEEEE
Q 037241 231 LNICGDEAHISIC-SPKKPGMFSTICYVLEKHKIEVISAQV 270 (306)
Q Consensus 231 V~i~g~~~~I~I~-c~~r~glL~~Il~aLe~l~LdVvsa~i 270 (306)
+....+.++|.|. .+.++|.+.+|+.+|.++++.|.....
T Consensus 258 i~~~~~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q 298 (421)
T 3ab4_A 258 VATDKSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQ 298 (421)
T ss_dssp EEEECSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEE
T ss_pred EEeeCCEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEc
Confidence 4566777888888 678899999999999999998877653
No 60
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=41.32 E-value=26 Score=29.87 Aligned_cols=54 Identities=15% Similarity=0.170 Sum_probs=36.5
Q ss_pred EEEeCCeEEEEEE-cCCCCChHHHHHHHHHhCCCEEEEEE--EEee-CCeEEEEEEEE
Q 037241 231 LNICGDEAHISIC-SPKKPGMFSTICYVLEKHKIEVISAQ--VSSD-LTRRMYMIQVH 284 (306)
Q Consensus 231 V~i~g~~~~I~I~-c~~r~glL~~Il~aLe~l~LdVvsa~--is~~-~~~v~~~i~ak 284 (306)
|....+.+.|.|. .+.+||++.+|+.+|.+.++.|--.. ++.. ......+|++.
T Consensus 29 Ia~~~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~ 86 (200)
T 4go7_X 29 VAHDRSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCS 86 (200)
T ss_dssp EEEECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEE
T ss_pred EEccCCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecc
Confidence 3455677788875 67899999999999999987765543 3322 23444445554
No 61
>2rrl_A FLIK, flagellar HOOK-length control protein; FLHB, bacterial flagella motor, P transport; NMR {Salmonella typhimurium}
Probab=40.98 E-value=60 Score=26.99 Aligned_cols=48 Identities=17% Similarity=0.331 Sum_probs=40.1
Q ss_pred cccEEEEEeCCeEEEEEEcCCC------CChHHHHHHHHHhCCCEEEEEEEEee
Q 037241 226 SSNVVLNICGDEAHISICSPKK------PGMFSTICYVLEKHKIEVISAQVSSD 273 (306)
Q Consensus 226 ~~~V~V~i~g~~~~I~I~c~~r------~glL~~Il~aLe~l~LdVvsa~is~~ 273 (306)
..+|.|++.++.+.|.|..... ..-|.++-+.|++.||.+..++|+..
T Consensus 100 ~l~V~l~~~~~q~~v~f~a~~~~vReaLe~~lp~LRe~La~qGi~L~~v~Vs~~ 153 (169)
T 2rrl_A 100 QVHISLKLDDNQAQLQMVSPHSHVRAALEAALPMLRTQLAESGIQLGQSSISSE 153 (169)
T ss_dssp CEEEEEEEETTEEEEEEECCSSHHHHHHHHTHHHHHHHHHTTTCEEEEEEEESS
T ss_pred cEEEEEEEECCEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHcCCCeeeEEEecC
Confidence 3468888899999999998874 34578888999999999999999753
No 62
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=38.64 E-value=64 Score=26.67 Aligned_cols=39 Identities=15% Similarity=0.263 Sum_probs=30.0
Q ss_pred EEEeCCeEEEEEE-cCCCCChHHHHHHHHHhCCCEEEEEE
Q 037241 231 LNICGDEAHISIC-SPKKPGMFSTICYVLEKHKIEVISAQ 269 (306)
Q Consensus 231 V~i~g~~~~I~I~-c~~r~glL~~Il~aLe~l~LdVvsa~ 269 (306)
|....+.+.|.|. .+.++|.+.+|+.+|.+.++.|....
T Consensus 10 Ia~~~~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~ 49 (181)
T 3s1t_A 10 VAHDRSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVL 49 (181)
T ss_dssp EEEECSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEE
T ss_pred EEecCCEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEE
Confidence 3445566677765 45789999999999999998887654
No 63
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=37.31 E-value=33 Score=23.38 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Q 037241 139 VSYIKTLQQTLRKLQKQKLERLQG 162 (306)
Q Consensus 139 i~YIk~Lq~~~~~L~~~~~~~~~~ 162 (306)
-.||..|+.+++.|+.+...|...
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~~ 44 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELAST 44 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367777777777777777766543
No 64
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=37.29 E-value=1.7e+02 Score=26.83 Aligned_cols=44 Identities=18% Similarity=0.274 Sum_probs=36.4
Q ss_pred CCCChHHHHHHHHHhCCCEEEEEEEEeeCCeE-EEEEEEEEcCcc
Q 037241 246 KKPGMFSTICYVLEKHKIEVISAQVSSDLTRR-MYMIQVHVNGAS 289 (306)
Q Consensus 246 ~r~glL~~Il~aLe~l~LdVvsa~is~~~~~v-~~~i~akv~~~~ 289 (306)
.+||.|.++|..|...||+.....+-...+.. -|.|.+.+++..
T Consensus 217 ~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~~ 261 (329)
T 3luy_A 217 TGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTLDAAP 261 (329)
T ss_dssp CSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEESSCT
T ss_pred CCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEEeCCc
Confidence 47999999999999999999999988776654 456888887643
No 65
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=36.87 E-value=74 Score=28.99 Aligned_cols=51 Identities=12% Similarity=0.266 Sum_probs=38.6
Q ss_pred EEEEEEcC-CCCChHHHHHHHHHhCCCEEEEEEEEeeCCe-EEEEEEEEEcCc
Q 037241 238 AHISICSP-KKPGMFSTICYVLEKHKIEVISAQVSSDLTR-RMYMIQVHVNGA 288 (306)
Q Consensus 238 ~~I~I~c~-~r~glL~~Il~aLe~l~LdVvsa~is~~~~~-v~~~i~akv~~~ 288 (306)
..|-+..+ .+||.|.++|..|...||+.....+-...+. --|.|.+.+++.
T Consensus 202 TSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~ 254 (313)
T 3mwb_A 202 TTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDADGH 254 (313)
T ss_dssp EEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEEESC
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEEeCC
Confidence 45566665 7999999999999999999999998765443 235566666643
No 66
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=36.78 E-value=34 Score=23.59 Aligned_cols=22 Identities=14% Similarity=0.231 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 037241 140 SYIKTLQQTLRKLQKQKLERLQ 161 (306)
Q Consensus 140 ~YIk~Lq~~~~~L~~~~~~~~~ 161 (306)
.||..|+.+++.|+.++..|..
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ 51 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLEN 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777777666643
No 67
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=36.77 E-value=33 Score=23.10 Aligned_cols=24 Identities=8% Similarity=0.414 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCC
Q 037241 102 WTERERRKKMRNMFANLHSLLPQL 125 (306)
Q Consensus 102 ~~Er~RR~~~~~~~~~Lr~lvP~~ 125 (306)
.++|-+|...++-+.+|+.+.|++
T Consensus 3 ~a~~i~~~e~~~~~~~L~~MFP~l 26 (54)
T 1p3q_Q 3 LIKKIEENERKDTLNTLQNMFPDM 26 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHcccC
Confidence 467889999999999999999997
No 68
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=35.07 E-value=46 Score=28.14 Aligned_cols=29 Identities=21% Similarity=0.180 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 037241 133 SIVDEAVSYIKTLQQTLRKLQKQKLERLQ 161 (306)
Q Consensus 133 ~iL~~ai~YIk~Lq~~~~~L~~~~~~~~~ 161 (306)
.+|+-+++-|..|+.+++.|+++.++|..
T Consensus 145 elid~~ld~~~~L~~~n~~LqkeNeRL~~ 173 (184)
T 3w03_C 145 ELICYCLDTIAENQAKNEHLQKENERLLR 173 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777778899999999999999998864
No 69
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=34.97 E-value=64 Score=26.64 Aligned_cols=50 Identities=16% Similarity=0.209 Sum_probs=36.1
Q ss_pred EEEEeCCeEEEEEEc---CCCCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEEE
Q 037241 230 VLNICGDEAHISICS---PKKPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYMI 281 (306)
Q Consensus 230 ~V~i~g~~~~I~I~c---~~r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~i 281 (306)
.|.+..+-+.|.|.. ...+|++.+++++|.+.+++|.-.+ +..-.+.+.|
T Consensus 89 ~v~~~~~va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~Is--tSei~Is~vV 141 (181)
T 3s1t_A 89 QLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS--TSEIRISVLC 141 (181)
T ss_dssp EEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE--EETTEEEEEE
T ss_pred eEEEeCCEEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEE--cCCCEEEEEE
Confidence 455666767777664 3589999999999999999988777 3344444444
No 70
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=34.20 E-value=50 Score=18.26 Aligned_cols=19 Identities=32% Similarity=0.424 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 037241 132 SSIVDEAVSYIKTLQQTLR 150 (306)
Q Consensus 132 ~~iL~~ai~YIk~Lq~~~~ 150 (306)
.+-|-+|-+|+.+|.++++
T Consensus 3 vsgliearkyleqlhrklk 21 (26)
T 1xkm_B 3 VSGLIEARKYLEQLHRKLK 21 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 3557788889888887765
No 71
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=32.00 E-value=46 Score=22.54 Aligned_cols=22 Identities=9% Similarity=0.205 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q 037241 140 SYIKTLQQTLRKLQKQKLERLQ 161 (306)
Q Consensus 140 ~YIk~Lq~~~~~L~~~~~~~~~ 161 (306)
.|+..|+.+++.|+.+...|..
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~ 43 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQS 43 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5777777777777777666653
No 72
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=31.52 E-value=70 Score=28.46 Aligned_cols=51 Identities=16% Similarity=0.270 Sum_probs=39.1
Q ss_pred CeEEEEEEc---CCCCChHHHHHHHHHhCCCEEEEEEEEeeCCe-EEEEEEEEEc
Q 037241 236 DEAHISICS---PKKPGMFSTICYVLEKHKIEVISAQVSSDLTR-RMYMIQVHVN 286 (306)
Q Consensus 236 ~~~~I~I~c---~~r~glL~~Il~aLe~l~LdVvsa~is~~~~~-v~~~i~akv~ 286 (306)
+...|-+.. +.+||.|.++|..|...||+.....+-...+. --|.|.+.++
T Consensus 185 ~ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e 239 (267)
T 2qmw_A 185 NATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQAD 239 (267)
T ss_dssp SCSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEES
T ss_pred CeEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEEe
Confidence 344566666 78999999999999999999999998765543 3355666665
No 73
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=31.23 E-value=53 Score=24.67 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 037241 135 VDEAVSYIKTLQQTLRKLQKQK 156 (306)
Q Consensus 135 L~~ai~YIk~Lq~~~~~L~~~~ 156 (306)
.+.|=+||.+|.++++.|+...
T Consensus 65 ~e~a~e~vp~L~~~i~vle~~~ 86 (94)
T 3fx7_A 65 DEAAQEQIAWLKERIRVLEEDY 86 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHhHHHHHHHHHhHHHH
Confidence 5577799999999999998764
No 74
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=31.20 E-value=16 Score=25.76 Aligned_cols=21 Identities=19% Similarity=0.270 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 037241 139 VSYIKTLQQTLRKLQKQKLER 159 (306)
Q Consensus 139 i~YIk~Lq~~~~~L~~~~~~~ 159 (306)
-.||..|+.+++.||..+..+
T Consensus 57 ~~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 479999999999998877654
No 75
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=30.84 E-value=53 Score=22.09 Aligned_cols=28 Identities=7% Similarity=0.001 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037241 133 SIVDEAVSYIKTLQQTLRKLQKQKLERL 160 (306)
Q Consensus 133 ~iL~~ai~YIk~Lq~~~~~L~~~~~~~~ 160 (306)
..|+..++-+..|.+++++|+.+.+++.
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~ 54 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNELD 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588888888899999999988887653
No 76
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=30.34 E-value=38 Score=24.60 Aligned_cols=20 Identities=25% Similarity=0.273 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 037241 140 SYIKTLQQTLRKLQKQKLER 159 (306)
Q Consensus 140 ~YIk~Lq~~~~~L~~~~~~~ 159 (306)
.||..|+++++.|+..+.++
T Consensus 48 ~~~~~Le~rl~~le~~l~~~ 67 (96)
T 1pyi_A 48 SYVFFLEDRLAVMMRVLKEY 67 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 59999999999999988765
No 77
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=27.70 E-value=52 Score=23.35 Aligned_cols=21 Identities=14% Similarity=0.246 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 037241 140 SYIKTLQQTLRKLQKQKLERL 160 (306)
Q Consensus 140 ~YIk~Lq~~~~~L~~~~~~~~ 160 (306)
.||..|+++++.|+..+..+.
T Consensus 45 ~~~~~L~~r~~~le~~l~~l~ 65 (89)
T 3coq_A 45 AHLTEVESRLERLEQLFLLIF 65 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 699999999999999988763
No 78
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=27.68 E-value=1.6e+02 Score=27.53 Aligned_cols=49 Identities=12% Similarity=0.188 Sum_probs=33.7
Q ss_pred EEEeCCeEEEEEEcC---CCCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEEE
Q 037241 231 LNICGDEAHISICSP---KKPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYMI 281 (306)
Q Consensus 231 V~i~g~~~~I~I~c~---~r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~i 281 (306)
|.+..+-+.|.|... ..+|++.+++.+|.+.+++|.-.+ +....+.+.|
T Consensus 338 v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is--~Se~~is~vV 389 (421)
T 3ab4_A 338 VLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS--TSEIRISVLI 389 (421)
T ss_dssp EEEECCEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCCEEE--EETTEEEEEE
T ss_pred EEEeCCeEEEEEEccCcccCccHHHHHHHHHHHCCCCEEEEE--cCCCeEEEEE
Confidence 444455556666653 579999999999999999997443 3354444444
No 79
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=27.40 E-value=67 Score=19.68 Aligned_cols=19 Identities=16% Similarity=0.274 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 037241 142 IKTLQQTLRKLQKQKLERL 160 (306)
Q Consensus 142 Ik~Lq~~~~~L~~~~~~~~ 160 (306)
+.+|+.+|++|-.++..|.
T Consensus 3 MnQLE~KVEeLl~~~~~Le 21 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLK 21 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHH
Confidence 4566666666666655543
No 80
>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10
Probab=26.88 E-value=1.5e+02 Score=28.84 Aligned_cols=38 Identities=16% Similarity=0.232 Sum_probs=30.7
Q ss_pred EeCCeEEEEEEc---CCCCChHHHHHHHHHhCCCEEEEEEE
Q 037241 233 ICGDEAHISICS---PKKPGMFSTICYVLEKHKIEVISAQV 270 (306)
Q Consensus 233 i~g~~~~I~I~c---~~r~glL~~Il~aLe~l~LdVvsa~i 270 (306)
...+-+.|.|.. ...+|++.+|+.+|.++++.|.....
T Consensus 337 ~~~~~~~I~i~~~~m~~~~g~~~~if~~la~~~I~vd~I~s 377 (510)
T 2cdq_A 337 LKRNVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVAT 377 (510)
T ss_dssp EEEEEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEEE
T ss_pred ccCCeEEEEEEcCCCCCcccHHHHHHHHHHHcCCcEEEEEe
Confidence 344556788885 45899999999999999999988853
No 81
>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}
Probab=26.76 E-value=38 Score=27.11 Aligned_cols=40 Identities=10% Similarity=-0.042 Sum_probs=30.0
Q ss_pred EEEeCCeEEEEEEcC---CCCChHHHHHHHHHhCCCEEEEEEE
Q 037241 231 LNICGDEAHISICSP---KKPGMFSTICYVLEKHKIEVISAQV 270 (306)
Q Consensus 231 V~i~g~~~~I~I~c~---~r~glL~~Il~aLe~l~LdVvsa~i 270 (306)
|....+-+.|.|... ..+|.+.+|+.+|.++++.|...+.
T Consensus 12 Ia~~~~va~Iti~~~~m~~~~g~~~~if~~La~~~I~vd~I~~ 54 (157)
T 3mah_A 12 VAAKDGITVIKVKSSNKLLSWHFMRKLFEIFEFYQEPVDMVAT 54 (157)
T ss_dssp EEEEEEEEEEEEEECTTSCHHHHHHHHHHHHHHTTCCCSCEEC
T ss_pred EEecCCEEEEEEEeCCCCCchhHHHHHHHHHHHcCCCEEEEEe
Confidence 344455667887744 4678999999999999988876653
No 82
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=26.21 E-value=79 Score=26.59 Aligned_cols=29 Identities=21% Similarity=0.180 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 037241 133 SIVDEAVSYIKTLQQTLRKLQKQKLERLQ 161 (306)
Q Consensus 133 ~iL~~ai~YIk~Lq~~~~~L~~~~~~~~~ 161 (306)
.++.-+++-|..|+.++..|++|+++|.+
T Consensus 154 ELi~~~L~~i~~L~a~N~hLqkENeRL~~ 182 (186)
T 3q4f_C 154 ELICYCLDTIAENQAKNEHLQKENERLLR 182 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666699999999999999999864
No 83
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Probab=25.86 E-value=1.2e+02 Score=28.66 Aligned_cols=57 Identities=16% Similarity=0.281 Sum_probs=41.3
Q ss_pred ccEEEEEeCCeEEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEEEEE
Q 037241 227 SNVVLNICGDEAHISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYMIQV 283 (306)
Q Consensus 227 ~~V~V~i~g~~~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~i~a 283 (306)
++|.+-.+.....|.+.-...||+|.+|-.+|-++|++|..-...+.++..+.+|-+
T Consensus 333 p~~~~~~~~~~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~y~~~d~ 389 (416)
T 3k5p_A 333 PQVQLPPRPTGTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVGYLVMEA 389 (416)
T ss_dssp CCCCCCCCSSSEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEE
T ss_pred CCcCCCCCCCceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCceEEEEEEe
Confidence 344443344445677777889999999999999999999988877766655444533
No 84
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=25.81 E-value=77 Score=19.04 Aligned_cols=19 Identities=11% Similarity=0.225 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 037241 142 IKTLQQTLRKLQKQKLERL 160 (306)
Q Consensus 142 Ik~Lq~~~~~L~~~~~~~~ 160 (306)
+++|+.+|++|-.++..+.
T Consensus 2 MnQLEdKVEell~~~~~le 20 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNT 20 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHH
Confidence 4566666666666665553
No 85
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.22 E-value=1e+02 Score=22.89 Aligned_cols=24 Identities=13% Similarity=0.167 Sum_probs=20.7
Q ss_pred CChHHHHHHHHHhCCCEEEEEEEEe
Q 037241 248 PGMFSTICYVLEKHKIEVISAQVSS 272 (306)
Q Consensus 248 ~glL~~Il~aLe~l~LdVvsa~is~ 272 (306)
+.++..|++.|..+| +|+.+.+..
T Consensus 26 ~~l~~~L~~~F~~~G-~Vi~vr~~~ 49 (91)
T 2dnr_A 26 DALIDELLQQFASFG-EVILIRFVE 49 (91)
T ss_dssp HHHHHHHHHHHHTTC-CEEEEEECS
T ss_pred HHHHHHHHHHHHhCC-CeEEEEEec
Confidence 347899999999999 999998865
No 86
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT DOMA amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Probab=23.71 E-value=80 Score=30.23 Aligned_cols=41 Identities=22% Similarity=0.203 Sum_probs=31.1
Q ss_pred EEeCCeEEEEEEc---CCCCChHHHHHHHHHhCCCEEEEEEEEe
Q 037241 232 NICGDEAHISICS---PKKPGMFSTICYVLEKHKIEVISAQVSS 272 (306)
Q Consensus 232 ~i~g~~~~I~I~c---~~r~glL~~Il~aLe~l~LdVvsa~is~ 272 (306)
....+-+.|.|.. ..++|++.+|+.+|.++++.|...+-.+
T Consensus 313 a~~~~~a~Isv~g~~m~~~~G~~a~if~~La~~~InV~~IsQ~t 356 (473)
T 3c1m_A 313 STIKNVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGS 356 (473)
T ss_dssp EEEEEEEEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred hccCCeEEEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEEecC
Confidence 3344556788874 4567999999999999999998877433
No 87
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=23.59 E-value=90 Score=18.75 Aligned_cols=19 Identities=11% Similarity=0.223 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 037241 142 IKTLQQTLRKLQKQKLERL 160 (306)
Q Consensus 142 Ik~Lq~~~~~L~~~~~~~~ 160 (306)
+.+|+.+|++|-.++..|.
T Consensus 2 MnQLEdKvEeLl~~~~~Le 20 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXE 20 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHH
Confidence 3566666666666665553
No 88
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Probab=23.28 E-value=2.9e+02 Score=26.56 Aligned_cols=52 Identities=19% Similarity=0.268 Sum_probs=37.5
Q ss_pred CeEEEEEEcCCCCChHHHHHHHHHhCCCEEEEEEEEeeCCeEEEEEEEEEcC
Q 037241 236 DEAHISICSPKKPGMFSTICYVLEKHKIEVISAQVSSDLTRRMYMIQVHVNG 287 (306)
Q Consensus 236 ~~~~I~I~c~~r~glL~~Il~aLe~l~LdVvsa~is~~~~~v~~~i~akv~~ 287 (306)
....|-+.-+.+||.+.+|...|-+++++|-+.++......-..++...+..
T Consensus 453 ~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~vd~ 504 (529)
T 1ygy_A 453 QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQ 504 (529)
T ss_dssp CSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESS
T ss_pred CccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEECC
Confidence 3445556677899999999999999999999999987543222233335543
No 89
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=22.79 E-value=2.3e+02 Score=20.74 Aligned_cols=44 Identities=14% Similarity=0.197 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037241 108 RKKMRNMFANLHSLLPQLPPKADKSSIVDEAVSYIKTLQQTLRKLQKQKLERL 160 (306)
Q Consensus 108 R~~~~~~~~~Lr~lvP~~~~k~~k~~iL~~ai~YIk~Lq~~~~~L~~~~~~~~ 160 (306)
|.+..+.+..|+.-+ ..-|..=++-|+.|+..++.++..+..|.
T Consensus 35 rqkekEqL~~LKkkl---------~~el~~h~~ei~~le~~i~rhk~~i~~l~ 78 (84)
T 1gmj_A 35 RARAKEQLAALKKHK---------ENEISHHAKEIERLQKEIERHKQSIKKLK 78 (84)
T ss_dssp HHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 667778888887644 33355556667777777777766666553
No 90
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=22.30 E-value=50 Score=28.15 Aligned_cols=45 Identities=16% Similarity=0.451 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 037241 107 RRKKMRNMFANLHSLLPQLPPKADKSSIVDEAVSYIKTLQQTLRKLQ 153 (306)
Q Consensus 107 RR~~~~~~~~~Lr~lvP~~~~k~~k~~iL~~ai~YIk~Lq~~~~~L~ 153 (306)
=|..++.-...|+.|+-. .-.....++.+||+|++.|-.-...|+
T Consensus 52 v~~Dl~~F~~QL~qL~~~--~i~~Tre~v~d~l~YLkkLD~l~~~Lq 96 (204)
T 2jqq_A 52 TQSDLQKFMTQLDHLIKD--DISNTQEIIKDVLEYLKKLDEIYGSLR 96 (204)
T ss_dssp HHHHHHHHHHHHHHHHHH--SCSTTHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHhh--hhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666777776643 233458999999999999987665544
No 91
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=22.26 E-value=20 Score=32.44 Aligned_cols=12 Identities=42% Similarity=0.487 Sum_probs=0.0
Q ss_pred CCCCCCCCcCCC
Q 037241 10 GGEGGLLHEGFF 21 (306)
Q Consensus 10 ~~~~~~~~~~~~ 21 (306)
||.||++-.+-.
T Consensus 193 ~~~~~~~~~~~~ 204 (279)
T 3p8c_D 193 GGSGGSGGSGGS 204 (279)
T ss_dssp ------------
T ss_pred CCCCCCCCCCcc
Confidence 444444443333
No 92
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=21.96 E-value=1e+02 Score=18.66 Aligned_cols=19 Identities=11% Similarity=0.165 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 037241 142 IKTLQQTLRKLQKQKLERL 160 (306)
Q Consensus 142 Ik~Lq~~~~~L~~~~~~~~ 160 (306)
+.+|+.+|++|-.++++|.
T Consensus 3 MnQLE~kVEeLl~~n~~Le 21 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLE 21 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHH
Confidence 4456666666666666554
No 93
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=21.21 E-value=1.3e+02 Score=17.51 Aligned_cols=18 Identities=22% Similarity=0.338 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 037241 142 IKTLQQTLRKLQKQKLER 159 (306)
Q Consensus 142 Ik~Lq~~~~~L~~~~~~~ 159 (306)
++.|+.-+++|++..++|
T Consensus 8 ~r~l~~ivq~lq~r~drl 25 (32)
T 2akf_A 8 VRNLNAIVQKLQERLDRL 25 (32)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555555555544
No 94
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=21.09 E-value=50 Score=18.57 Aligned_cols=20 Identities=20% Similarity=0.212 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 037241 142 IKTLQQTLRKLQKQKLERLQ 161 (306)
Q Consensus 142 Ik~Lq~~~~~L~~~~~~~~~ 161 (306)
|+.|+++..+|+++...+..
T Consensus 2 irrlkqknarlkqeiaaley 21 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALEY 21 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHH
Confidence 56777888888877766543
No 95
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=20.85 E-value=2.2e+02 Score=19.75 Aligned_cols=52 Identities=10% Similarity=0.114 Sum_probs=33.5
Q ss_pred HHHHHHHHH---HHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037241 102 WTERERRKK---MRNMFANLHSLLPQLPPKADKSSIVDEAVSYIKTLQQTLRKLQKQKLER 159 (306)
Q Consensus 102 ~~Er~RR~~---~~~~~~~Lr~lvP~~~~k~~k~~iL~~ai~YIk~Lq~~~~~L~~~~~~~ 159 (306)
.+++.|.+- .+.+|..|...+... ..-|..+-.-|..|..+++.|+.+.+.+
T Consensus 21 ia~knr~EaE~~y~~k~eel~~~~~~~------~~~l~~~k~Ei~elrr~iq~L~~el~sl 75 (77)
T 3trt_A 21 VAAKNLQEAEEWYKSKFADLSEAANRN------NDALRQAKQESTEYRRQVQSLTMEVDAL 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhh------HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444554432 344566666544322 3446667777999999999999998765
No 96
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=20.75 E-value=72 Score=19.53 Aligned_cols=17 Identities=12% Similarity=0.278 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 037241 143 KTLQQTLRKLQKQKLER 159 (306)
Q Consensus 143 k~Lq~~~~~L~~~~~~~ 159 (306)
++|+.+|++|..++..|
T Consensus 4 nQLE~kVEeLl~~~~~L 20 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHL 20 (36)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHH
Confidence 45555555555555544
Done!