BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037245
(215 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 74/161 (45%), Gaps = 15/161 (9%)
Query: 24 ELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLR 83
+LL R G + ++R + ++ + G T LH+A R H I E+L + + +
Sbjct: 5 KLLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAR-EGHLEIVEVLLKAGADVN 62
Query: 84 KHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVR 143
+ G TPLH+AAR G IV +L + D +G TPLH A R
Sbjct: 63 AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN------------AKDKDGYTPLHLAAR 110
Query: 144 NKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIA 184
H +V +L+K + +K +TP +AID+ DIA
Sbjct: 111 EGHLEIVEVLLKA-GADVNAQDKFGKTPFDLAIDNGNEDIA 150
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 72/161 (44%), Gaps = 15/161 (9%)
Query: 24 ELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLR 83
+LL R G + ++R + ++ + G T LH+A R H I E+L + + +
Sbjct: 5 KLLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAR-EGHLEIVEVLLKAGADVN 62
Query: 84 KHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVR 143
+ G TPLH+AAR G IV +L + D +G TPLH A R
Sbjct: 63 AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN------------AKDKDGYTPLHLAAR 110
Query: 144 NKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIA 184
H +V +L+K + +K +TP +AI DIA
Sbjct: 111 EGHLEIVEVLLKA-GADVNAQDKFGKTPFDLAIREGHEDIA 150
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 76/161 (47%), Gaps = 15/161 (9%)
Query: 24 ELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLR 83
+LL R G + ++R + ++ + G+T LH+A R H I E+L + + +
Sbjct: 17 KLLEAARAGQDDEVRILMANGADV-NAEDTYGDTPLHLAARV-GHLEIVEVLLKNGADVN 74
Query: 84 KHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVR 143
+ G TPLH+AA+ G IV +L Y G + + + G+TPLH A
Sbjct: 75 ALDFSGSTPLHLAAKRGHLEIVEVLLKY------GADVNADDTI------GSTPLHLAAD 122
Query: 144 NKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIA 184
H +V +L+K + +K +T I+ID+ D+A
Sbjct: 123 TGHLEIVEVLLKY-GADVNAQDKFGKTAFDISIDNGNEDLA 162
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 73/161 (45%), Gaps = 15/161 (9%)
Query: 24 ELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLR 83
+LL R G + ++R + ++ + G T LH+A R H I E+L + + +
Sbjct: 17 KLLEAARAGQDDEVRILMANGADV-NAKDKDGYTPLHLAAR-EGHLEIVEVLLKAGADVN 74
Query: 84 KHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVR 143
+ G TPLH+AAR G IV +L + D +G TPLH A R
Sbjct: 75 AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN------------AKDKDGYTPLHLAAR 122
Query: 144 NKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIA 184
H +V +L+K + +K +T I+ID+ D+A
Sbjct: 123 EGHLEIVEVLLKA-GADVNAQDKFGKTAFDISIDNGNEDLA 162
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 76/161 (47%), Gaps = 15/161 (9%)
Query: 24 ELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLR 83
+LL R G + ++R + ++ +T G T LH+A H I E+L + + +
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNAT-DNDGYTPLHLAAS-NGHLEIVEVLLKNGADVN 74
Query: 84 KHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVR 143
+L G TPLH+AA G IV +L + + D++G+TPLH A +
Sbjct: 75 ASDLTGITPLHLAAATGHLEIVEVLLKHGADV------------NAYDNDGHTPLHLAAK 122
Query: 144 NKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIA 184
H +V +L+K + +K +T I+ID+ D+A
Sbjct: 123 YGHLEIVEVLLKH-GADVNAQDKFGKTAFDISIDNGNEDLA 162
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 77/161 (47%), Gaps = 15/161 (9%)
Query: 24 ELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLR 83
+LL R G + ++R + ++ + G T LH+A F H I E+L + + +
Sbjct: 17 KLLEAARAGQDDEVRILMANGADV-NARDFTGWTPLHLAAHF-GHLEIVEVLLKNGADVN 74
Query: 84 KHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVR 143
+ G TPLH+AAR G IV +L NG + + +D G TPLH A +
Sbjct: 75 AKDSLGVTPLHLAARRGHLEIVEVLL------KNGAD------VNASDSHGFTPLHLAAK 122
Query: 144 NKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIA 184
H +V +L+ K+ + +K +T I+ID+ D+A
Sbjct: 123 RGHLEIVEVLL-KNGADVNAQDKFGKTAFDISIDNGNEDLA 162
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 75/161 (46%), Gaps = 15/161 (9%)
Query: 24 ELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLR 83
+LL R G + ++R + ++ +T G T LH+A + H I E+L + + +
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNAT-DASGLTPLHLAATY-GHLEIVEVLLKHGADVN 74
Query: 84 KHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVR 143
++ G TPLH+AA +G IV +L + + D G+TPLH A
Sbjct: 75 AIDIXGSTPLHLAALIGHLEIVEVLLKHGADV------------NAVDTWGDTPLHLAAI 122
Query: 144 NKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIA 184
H +V +L+K + +K +T I+ID+ D+A
Sbjct: 123 MGHLEIVEVLLKHGA-DVNAQDKFGKTAFDISIDNGNEDLA 162
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 75/161 (46%), Gaps = 15/161 (9%)
Query: 24 ELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLR 83
+LL R G + ++R + ++ +T G T LH+A + H I E+L + + +
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNAT-DASGLTPLHLAATY-GHLEIVEVLLKHGADVN 74
Query: 84 KHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVR 143
++ G TPLH+AA +G IV +L + + D G+TPLH A
Sbjct: 75 AIDIMGSTPLHLAALIGHLEIVEVLLKHGADV------------NAVDTWGDTPLHLAAI 122
Query: 144 NKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIA 184
H +V +L+K + +K +T I+ID+ D+A
Sbjct: 123 MGHLEIVEVLLKHGA-DVNAQDKFGKTAFDISIDNGNEDLA 162
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 15/161 (9%)
Query: 24 ELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLR 83
+LL R G + ++R + ++ + G T LH+A + H I E+L + + +
Sbjct: 17 KLLEAARAGQDDEVRILMANGADV-NAEDDSGKTPLHLA-AIKGHLEIVEVLLKHGADVN 74
Query: 84 KHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVR 143
+ G+TPLH+AA G IV +L NG + + TD G TPLH A
Sbjct: 75 AADKMGDTPLHLAALYGHLEIVEVLLK------NGAD------VNATDTYGFTPLHLAAD 122
Query: 144 NKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIA 184
H +V +L+K + +K +T I+ID+ D+A
Sbjct: 123 AGHLEIVEVLLKY-GADVNAQDKFGKTAFDISIDNGNEDLA 162
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 15/161 (9%)
Query: 24 ELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLR 83
+LL R G + ++R + ++ + G T LH+A + H I E+L + + +
Sbjct: 17 KLLEAARAGQDDEVRILMANGADV-NAADNTGTTPLHLA-AYSGHLEIVEVLLKHGADVD 74
Query: 84 KHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVR 143
++ G TPLH+AA G IV +L NG + + D +G TPLH A +
Sbjct: 75 ASDVFGYTPLHLAAYWGHLEIVEVLLK------NGAD------VNAMDSDGMTPLHLAAK 122
Query: 144 NKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIA 184
+ +V +L+K + +K +T I+ID+ D+A
Sbjct: 123 WGYLEIVEVLLKHGA-DVNAQDKFGKTAFDISIDNGNEDLA 162
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 58/115 (50%), Gaps = 3/115 (2%)
Query: 24 ELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLR 83
+LL R G + ++R + ++ + M G T LH+A + R H I E+L + + +
Sbjct: 17 KLLEATRAGQDDEVRILMANGADV-NAMDDAGVTPLHLAAK-RGHLEIVEVLLKHGADVN 74
Query: 84 KHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPL 138
++ G TPLH+AA VG IV +L Y A N + ++ I+ D GN L
Sbjct: 75 ASDIWGRTPLHLAATVGHLEIVEVLLEY-GADVNAQDKFGKTAFDISIDNGNEDL 128
Score = 33.9 bits (76), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 13/96 (13%)
Query: 89 GETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 148
G TPLH+AA+ G IV +L + + +D G TPLH A H
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVN------------ASDIWGRTPLHLAATVGHLE 94
Query: 149 VVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIA 184
+V +L++ + +K +T I+ID+ D+A
Sbjct: 95 IVEVLLEYGA-DVNAQDKFGKTAFDISIDNGNEDLA 129
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 131 DDEGNTPLHNAVRNKHENVVRMLVK 155
DD G TPLH A + H +V +L+K
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLK 68
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 58/115 (50%), Gaps = 3/115 (2%)
Query: 24 ELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLR 83
+LL R G + ++R + ++ + M G T LH+A + R H I E+L + + +
Sbjct: 17 KLLEATRAGQDDEVRILMANGADV-NAMDDAGVTPLHLAAK-RGHLEIVEVLLKHGADVN 74
Query: 84 KHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPL 138
++ G TPLH+AA VG IV +L Y A N + ++ I+ D GN L
Sbjct: 75 ARDIWGRTPLHLAATVGHLEIVEVLLEY-GADVNAQDKFGKTAFDISIDNGNEDL 128
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 13/96 (13%)
Query: 89 GETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 148
G TPLH+AA+ G IV +L + + D G TPLH A H
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVN------------ARDIWGRTPLHLAATVGHLE 94
Query: 149 VVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIA 184
+V +L++ + +K +T I+ID+ D+A
Sbjct: 95 IVEVLLEYGA-DVNAQDKFGKTAFDISIDNGNEDLA 129
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 131 DDEGNTPLHNAVRNKHENVVRMLVK 155
DD G TPLH A + H +V +L+K
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLK 68
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 75/161 (46%), Gaps = 15/161 (9%)
Query: 24 ELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLR 83
+LL R G + ++R + ++ + G T LH+A + H I E+L + + +
Sbjct: 17 KLLEAARAGRDDEVRILMANGADV-NAADVVGWTPLHLA-AYWGHLEIVEVLLKNGADVN 74
Query: 84 KHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVR 143
++ G TPLH+AA G IV +L NG + + DD G TPLH A
Sbjct: 75 AYDTLGSTPLHLAAHFGHLEIVEVLL------KNGADVNAK------DDNGITPLHLAAN 122
Query: 144 NKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIA 184
H +V +L+K + +K +T I+I++ D+A
Sbjct: 123 RGHLEIVEVLLKYGA-DVNAQDKFGKTAFDISINNGNEDLA 162
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 75/161 (46%), Gaps = 15/161 (9%)
Query: 24 ELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLR 83
+LL R G + ++R + ++ +T G+T LH+A + H I E+L + + +
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNAT-DWLGHTPLHLAAK-TGHLEIVEVLLKYGADVN 74
Query: 84 KHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVR 143
+ G TPLH+AA G IV +L + + D EG TPLH A
Sbjct: 75 AWDNYGATPLHLAADNGHLEIVEVLLKHGADV------------NAKDYEGFTPLHLAAY 122
Query: 144 NKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIA 184
+ H +V +L+K + +K +T I+ID+ D+A
Sbjct: 123 DGHLEIVEVLLKY-GADVNAQDKFGKTAFDISIDNGNEDLA 162
Score = 30.4 bits (67), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 130 TDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIID 189
TD G+TPLH A + H +V +L+K + N TPL +A D+ +I ++
Sbjct: 43 TDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYG-ATPLHLAADNGHLEIVEVLLK 101
Query: 190 QRPDSLDHRLPEELTLLHSAV 210
D ++ + E T LH A
Sbjct: 102 HGAD-VNAKDYEGFTPLHLAA 121
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 73/161 (45%), Gaps = 15/161 (9%)
Query: 24 ELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLR 83
+LL R G + ++R + ++ + +G+T LH+A + H I E+L + + +
Sbjct: 17 KLLEAARAGQDDEVRILMANGADV-NAHDDQGSTPLHLA-AWIGHPEIVEVLLKHGADVN 74
Query: 84 KHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVR 143
+ G TPLH+AA G IV +L Y + D G TPLH A
Sbjct: 75 ARDTDGWTPLHLAADNGHLEIVEVLLKYGADVN------------AQDAYGLTPLHLAAD 122
Query: 144 NKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIA 184
H +V +L+K + +K +T I+ID+ D+A
Sbjct: 123 RGHLEIVEVLLKH-GADVNAQDKFGKTAFDISIDNGNEDLA 162
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 73/161 (45%), Gaps = 15/161 (9%)
Query: 24 ELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLR 83
+LL R G + ++R + ++ + + G T LH+A H I E+L + + +
Sbjct: 17 KLLEAARAGQDDEVRILIANGADV-NAVDNTGLTPLHLA-AVSGHLEIVEVLLKHGADVD 74
Query: 84 KHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVR 143
++ G TPLH+AA G IV +L Y + D G+TPLH A
Sbjct: 75 AADVYGFTPLHLAAMTGHLEIVEVLLKYGADV------------NAFDMTGSTPLHLAAD 122
Query: 144 NKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIA 184
H +V +L+K + +K +T I+ID+ D+A
Sbjct: 123 EGHLEIVEVLLKYGA-DVNAQDKFGKTAFDISIDNGNEDLA 162
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 55 GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
G T LH+A H I E+L + + + ++ G TPLH+AA G IV +L Y A
Sbjct: 80 GFTPLHLA-AMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKY-GA 137
Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRN 144
N + ++ I+ D GN L + RN
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLAKSCRN 167
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 3/115 (2%)
Query: 24 ELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLR 83
+LL R G + ++R + ++ + M G T LH+A + R H I E+L + + +
Sbjct: 17 KLLEATRAGQDDEVRILMANGADV-NAMDDAGVTPLHLAAK-RGHLEIVEVLLKHGADVN 74
Query: 84 KHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPL 138
+ G TPLH+AA VG IV +L Y A N + ++ I+ D GN L
Sbjct: 75 ASDSWGRTPLHLAATVGHLEIVEVLLEY-GADVNAQDKFGKTAFDISIDNGNEDL 128
Score = 35.0 bits (79), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 13/96 (13%)
Query: 89 GETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 148
G TPLH+AA+ G IV +L + + +D G TPLH A H
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVN------------ASDSWGRTPLHLAATVGHLE 94
Query: 149 VVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIA 184
+V +L++ + +K +T I+ID+ D+A
Sbjct: 95 IVEVLLEY-GADVNAQDKFGKTAFDISIDNGNEDLA 129
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 131 DDEGNTPLHNAVRNKHENVVRMLVK 155
DD G TPLH A + H +V +L+K
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLK 68
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 65/132 (49%), Gaps = 14/132 (10%)
Query: 25 LLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRK 84
L+ G++ +++ + ++ ++ S G T LH A + HK I ++L + + +
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSD-GRTPLHYAAK-EGHKEIVKLLISKGADVNA 65
Query: 85 HNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRN 144
+ G TPLH AA+ G IV + I+ G + + D +G TPLH A +
Sbjct: 66 KDSDGRTPLHYAAKEGHKEIVKLL------ISKGAD------VNAKDSDGRTPLHYAAKE 113
Query: 145 KHENVVRMLVKK 156
H+ +V++L+ K
Sbjct: 114 GHKEIVKLLISK 125
Score = 33.9 bits (76), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 112 VPAITNGTESEPESLLR------ITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYIN 165
+ A NG + + L+ +D +G TPLH A + H+ +V++L+ K + +
Sbjct: 9 IEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKG-ADVNAKD 67
Query: 166 KAEQTPLAIAIDSSLTDIACFIIDQRPD 193
+TPL A +I +I + D
Sbjct: 68 SDGRTPLHYAAKEGHKEIVKLLISKGAD 95
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 74/151 (49%), Gaps = 15/151 (9%)
Query: 25 LLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRK 84
L+ G++ +++ + ++ ++ S G T LH+A HK + ++L Q +
Sbjct: 8 LIEAAENGNKDRVKDLLENGADVNASDSD-GKTPLHLAAE-NGHKEVVKLLLSQGADPNA 65
Query: 85 HNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRN 144
+ G+TPLH+AA G +V +L+ ++P + D +G TPLH A N
Sbjct: 66 KDSDGKTPLHLAAENGHKEVVKLLLSQG--------ADPNA----KDSDGKTPLHLAAEN 113
Query: 145 KHENVVRMLVKKDRIPLGYINKAEQTPLAIA 175
H+ VV++L+ + P + +TPL +A
Sbjct: 114 GHKEVVKLLLSQGADP-NTSDSDGRTPLDLA 143
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 17/124 (13%)
Query: 89 GETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 148
G+TPLH+AA G +V +L+ ++P + D +G TPLH A N H+
Sbjct: 37 GKTPLHLAAENGHKEVVKLLLSQG--------ADPNA----KDSDGKTPLHLAAENGHKE 84
Query: 149 VVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPD----SLDHRLPEELT 204
VV++L+ + P + +TPL +A ++ ++ ++ Q D D R P +L
Sbjct: 85 VVKLLLSQGADPNAKDSDG-KTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLA 143
Query: 205 LLHS 208
H
Sbjct: 144 REHG 147
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 112 VPAITNGTESEPESLLR------ITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYIN 165
+ A NG + + LL +D +G TPLH A N H+ VV++L+ + P +
Sbjct: 9 IEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDS 68
Query: 166 KAEQTPLAIAIDSSLTDIACFIIDQRPD 193
+TPL +A ++ ++ ++ Q D
Sbjct: 69 DG-KTPLHLAAENGHKEVVKLLLSQGAD 95
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 3/115 (2%)
Query: 24 ELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLR 83
+LL R G + ++R + ++ + +GNT LH+A + +H I E+L + + +
Sbjct: 17 KLLEAARAGQDDEVRILMANGADV-NANDRKGNTPLHLAADY-DHLEIVEVLLKHGADVN 74
Query: 84 KHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPL 138
H+ G TPLH+AA G IV +L + A N + ++ I+ D GN L
Sbjct: 75 AHDNDGSTPLHLAALFGHLEIVEVLLKH-GADVNAQDKFGKTAFDISIDNGNEDL 128
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 13/97 (13%)
Query: 88 KGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHE 147
KG TPLH+AA IV +L + + D++G+TPLH A H
Sbjct: 46 KGNTPLHLAADYDHLEIVEVLLKHGADVN------------AHDNDGSTPLHLAALFGHL 93
Query: 148 NVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIA 184
+V +L+K + +K +T I+ID+ D+A
Sbjct: 94 EIVEVLLKH-GADVNAQDKFGKTAFDISIDNGNEDLA 129
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 72/161 (44%), Gaps = 15/161 (9%)
Query: 24 ELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLR 83
+LL R G + ++R + ++ + G T LH+ + H I E+L + + +
Sbjct: 17 KLLEAARAGQDDEVRILMANGADV-NANDWFGITPLHLVVN-NGHLEIIEVLLKYAADVN 74
Query: 84 KHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVR 143
+ G TPLH+AA G IV +L Y + D +G TPLH A
Sbjct: 75 ASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVN------------AMDYQGYTPLHLAAE 122
Query: 144 NKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIA 184
+ H +V +L+K + +K +T I+ID+ D+A
Sbjct: 123 DGHLEIVEVLLKYGA-DVNAQDKFGKTAFDISIDNGNEDLA 162
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 65/135 (48%), Gaps = 14/135 (10%)
Query: 55 GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
G T LH+A R H + ++L + + + + G TPLH+AAR G +V +L
Sbjct: 2 GRTPLHLAAR-NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL----- 55
Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAI 174
E + + D G TPLH A RN H VV++L++ + +K +TPL +
Sbjct: 56 -------EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHL 107
Query: 175 AIDSSLTDIACFIID 189
A + ++ +++
Sbjct: 108 AARNGHLEVVKLLLE 122
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 13/105 (12%)
Query: 89 GETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 148
G TPLH+AAR G +V +L E + + D G TPLH A RN H
Sbjct: 2 GRTPLHLAARNGHLEVVKLLL------------EAGADVNAKDKNGRTPLHLAARNGHLE 49
Query: 149 VVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPD 193
VV++L++ + +K +TPL +A + ++ +++ D
Sbjct: 50 VVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 93
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 75/161 (46%), Gaps = 15/161 (9%)
Query: 24 ELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLR 83
+LL R G + ++R + ++ + G T LH+A F H I E+L + + +
Sbjct: 17 KLLEAARAGRDDEVRILMANGADV-NAEDASGWTPLHLA-AFNGHLEIVEVLLKNGADVN 74
Query: 84 KHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVR 143
+ G TPL +AA G IV +L NG + + D EG+TPLH A
Sbjct: 75 AVDHAGMTPLRLAALFGHLEIVEVLL------KNGAD------VNANDMEGHTPLHLAAM 122
Query: 144 NKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIA 184
H +V +L+ K+ + +K +T I+ID+ D+A
Sbjct: 123 FGHLEIVEVLL-KNGADVNAQDKFGKTAFDISIDNGNEDLA 162
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 60/119 (50%), Gaps = 14/119 (11%)
Query: 57 TVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAIT 116
T LH+A F H I + L Q+ + N+K ETPLH+AAR G + +L
Sbjct: 16 TPLHVA-SFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLL------- 67
Query: 117 NGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIA 175
+++ + + DD+ TPLH A R H N+V++L++ + P A TPL IA
Sbjct: 68 ---QNKAKVNAKAKDDQ--TPLHCAARIGHTNMVKLLLENNANP-NLATTAGHTPLHIA 120
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 67/160 (41%), Gaps = 19/160 (11%)
Query: 57 TVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAIT 116
T LHMA R H + + L Q + + +TPLH AAR+G +V +L
Sbjct: 49 TPLHMAAR-AGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLE------ 101
Query: 117 NGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAI 176
+ P + G+TPLH A R H V L++K+ + K TPL +A
Sbjct: 102 --NNANP----NLATTAGHTPLHIAAREGHVETVLALLEKEA-SQACMTKKGFTPLHVAA 154
Query: 177 DSSLTDIACFII--DQRPDSLDHRLPEELTLLHSAVMRQN 214
+A ++ D P++ LT LH AV N
Sbjct: 155 KYGKVRVAELLLERDAHPNAAG---KNGLTPLHVAVHHNN 191
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 17/139 (12%)
Query: 55 GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
G T LH+ + H + ++L + ++ G TPLH+A+ G+ +V +L +
Sbjct: 278 GLTPLHLVAQ-EGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQAD 336
Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAI 174
+ T+ G +PLH A + H ++V +L+K P ++ TPLAI
Sbjct: 337 VNAKTKL------------GYSPLHQAAQQGHTDIVTLLLKNGASP-NEVSSDGTTPLAI 383
Query: 175 AID---SSLTDIACFIIDQ 190
A S+TD+ + D+
Sbjct: 384 AKRLGYISVTDVLKVVTDE 402
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 72/162 (44%), Gaps = 25/162 (15%)
Query: 49 STMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTI 108
+ M+ +G T LH+A ++ +V E+L ++D+ G TPLH+A + IV +
Sbjct: 140 ACMTKKGFTPLHVAAKYGKVRV-AELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLL 198
Query: 109 L------------NYVPAITNGTESEPE---SLLRITDD------EGNTPLHNAVRNKHE 147
L Y P +++ E SLL+ +G TPLH A + H
Sbjct: 199 LPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHA 258
Query: 148 NVVRMLV-KKDRIPLGYINKAEQTPLAIAIDSSLTDIACFII 188
+V +L+ K+ LG NK+ TPL + +A +I
Sbjct: 259 EMVALLLSKQANGNLG--NKSGLTPLHLVAQEGHVPVADVLI 298
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 14/139 (10%)
Query: 55 GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
G T LH+A + +N + L Q +++G TPLH+AA+ G +V+ +L+
Sbjct: 212 GYTPLHIAAK-QNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQ-- 268
Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAI 174
NG + + G TPLH + H V +L+K + + + TPL +
Sbjct: 269 -ANG---------NLGNKSGLTPLHLVAQEGHVPVADVLIKHG-VMVDATTRMGYTPLHV 317
Query: 175 AIDSSLTDIACFIIDQRPD 193
A + F++ + D
Sbjct: 318 ASHYGNIKLVKFLLQHQAD 336
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 14/136 (10%)
Query: 55 GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
G T LH A HK I ++L + + + G TPLH AA G IV +L+
Sbjct: 37 GRTPLHYAAE-NGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLS---- 91
Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAI 174
++P + D +G TPLH A N H+ +V++L+ K P + +TPL +
Sbjct: 92 ----KGADPNA----KDSDGRTPLHYAAENGHKEIVKLLLSKGADP-NTSDSDGRTPLDL 142
Query: 175 AIDSSLTDIACFIIDQ 190
A + +I + Q
Sbjct: 143 AREHGNEEIVKLLEKQ 158
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 56/124 (45%), Gaps = 17/124 (13%)
Query: 89 GETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 148
G TPLH AA G IV +L+ ++P + D +G TPLH A N H+
Sbjct: 37 GRTPLHYAAENGHKEIVKLLLS--------KGADPNA----KDSDGRTPLHYAAENGHKE 84
Query: 149 VVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPD----SLDHRLPEELT 204
+V++L+ K P + +TPL A ++ +I ++ + D D R P +L
Sbjct: 85 IVKLLLSKGADPNAKDSDG-RTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLA 143
Query: 205 LLHS 208
H
Sbjct: 144 REHG 147
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 112 VPAITNGTESEPESLLR------ITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYIN 165
+ A NG + + LL +D +G TPLH A N H+ +V++L+ K P +
Sbjct: 9 IEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDS 68
Query: 166 KAEQTPLAIAIDSSLTDIACFIIDQRPD 193
+TPL A ++ +I ++ + D
Sbjct: 69 DG-RTPLHYAAENGHKEIVKLLLSKGAD 95
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 13/101 (12%)
Query: 55 GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
G T LH+A R H + ++L + + + + G TPLH+AAR G +V +L
Sbjct: 2 GRTPLHLAAR-NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL----- 55
Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVK 155
E + + D G TPLH A RN H VV++L++
Sbjct: 56 -------EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 13/101 (12%)
Query: 89 GETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 148
G TPLH+AAR G +V +L E + + D G TPLH A RN H
Sbjct: 2 GRTPLHLAARNGHLEVVKLLL------------EAGADVNAKDKNGRTPLHLAARNGHLE 49
Query: 149 VVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIID 189
VV++L++ + +K +TPL +A + ++ +++
Sbjct: 50 VVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 74/161 (45%), Gaps = 15/161 (9%)
Query: 24 ELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLR 83
+LL R G + ++R + ++ ++ G T LH+A F H I E+L + + +
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNAS-DHVGWTPLHLAAYF-GHLEIVEVLLKNGADVN 74
Query: 84 KHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVR 143
+ G TPLH+AA G +V +L NG + + D G TPLH A
Sbjct: 75 ADDSLGVTPLHLAADRGHLEVVEVLL------KNGAD------VNANDHNGFTPLHLAAN 122
Query: 144 NKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIA 184
H +V +L+K + +K +T I+ID+ D+A
Sbjct: 123 IGHLEIVEVLLKH-GADVNAQDKFGKTAFDISIDNGNEDLA 162
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 64/132 (48%), Gaps = 14/132 (10%)
Query: 25 LLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRK 84
L+ G++ +++ + ++ ++ S G T LH A HK + ++L + + +
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSD-GRTPLHHAAE-NGHKEVVKLLISKGADVNA 65
Query: 85 HNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRN 144
+ G TPLH AA G +V + I+ G + + D +G TPLH+A N
Sbjct: 66 KDSDGRTPLHHAAENGHKEVVKLL------ISKGAD------VNAKDSDGRTPLHHAAEN 113
Query: 145 KHENVVRMLVKK 156
H+ VV++L+ K
Sbjct: 114 GHKEVVKLLISK 125
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 112 VPAITNGTESEPESLLR------ITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYIN 165
+ A NG + + L+ +D +G TPLH+A N H+ VV++L+ K + +
Sbjct: 9 IEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKG-ADVNAKD 67
Query: 166 KAEQTPLAIAIDSSLTDIACFIIDQRPD 193
+TPL A ++ ++ +I + D
Sbjct: 68 SDGRTPLHHAAENGHKEVVKLLISKGAD 95
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 71/161 (44%), Gaps = 15/161 (9%)
Query: 24 ELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLR 83
+LL R G + ++R + + + G T LHMA H I E+L + + +
Sbjct: 5 KLLEAARAGQDDEVRILMANGADA-NAYDHYGRTPLHMAAAV-GHLEIVEVLLRNGADVN 62
Query: 84 KHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVR 143
+ G TPLH+AA +G IV +L Y G + + D G TPL+ A
Sbjct: 63 AVDTNGTTPLHLAASLGHLEIVEVLLKY------GADVNAK------DATGITPLYLAAY 110
Query: 144 NKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIA 184
H +V +L+K + +K +T I+ID D+A
Sbjct: 111 WGHLEIVEVLLKHGA-DVNAQDKFGKTAFDISIDIGNEDLA 150
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/204 (20%), Positives = 85/204 (41%), Gaps = 36/204 (17%)
Query: 20 TMDHELLNVLRRGDEH---------QIRPIAGRMQN-IFSTMSPRGNTVLHMAIRFRNHK 69
T+ E L + R D H R ++ R+ + + + GNT LH ++ N
Sbjct: 66 TVLQEWLRLACRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFP 125
Query: 70 VIPEILRQQDSLLRKHNLKGETPLHIAA-----------------RVGD---PAIVSTIL 109
V+ ++L + K N G +P+ + A R+G+ A +
Sbjct: 126 VVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQT 185
Query: 110 NYVPAITNGTESEPESLL------RITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGY 163
+ A+++G ++LL + DD+G+T L A + H+ + +L+ +
Sbjct: 186 ALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISL 245
Query: 164 INKAEQTPLAIAIDSSLTDIACFI 187
++ T L +A+D+ ++IA +
Sbjct: 246 TDRDGSTALMVALDAGQSEIASML 269
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 48/113 (42%), Gaps = 15/113 (13%)
Query: 51 MSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKG---ETPLHIAARVGDPAIVST 107
++ G++ LH+AI + E++RQ L N + +TPLH+A P I
Sbjct: 4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 63
Query: 108 ILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIP 160
+L G +PE + D GNTPLH A V +L + P
Sbjct: 64 LL--------GAGCDPE----LRDFRGNTPLHLACEQGCLASVGVLTQSCTTP 104
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 61/142 (42%), Gaps = 17/142 (11%)
Query: 57 TVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAIT 116
T LH+A+ N I E L + +G TPLH+A G A V +
Sbjct: 47 TPLHLAV-ITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVL------TQ 99
Query: 117 NGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGY-INKAE----QTP 171
+ T S+L+ T+ G+T LH A + + +V +LV LG +N E +T
Sbjct: 100 SCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVS-----LGADVNAQEPCNGRTA 154
Query: 172 LAIAIDSSLTDIACFIIDQRPD 193
L +A+D D+ ++ D
Sbjct: 155 LHLAVDLQNPDLVSLLLKCGAD 176
Score = 30.8 bits (68), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 18/108 (16%)
Query: 54 RGNTVLHMAIRFRNHKVIPEILRQQ------DSLLRKHNLKGETPLHIAARVGDPAIVST 107
RGNT LH+A + +L Q S+L+ N G T LH+A+ G IV
Sbjct: 77 RGNTPLHLACE-QGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVEL 135
Query: 108 ILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVK 155
+++ + A N E G T LH AV ++ ++V +L+K
Sbjct: 136 LVS-LGADVNAQEP----------CNGRTALHLAVDLQNPDLVSLLLK 172
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 15/142 (10%)
Query: 55 GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
G++ + AI N +++ +L K+ L+ E PLH AA + D IV +L
Sbjct: 31 GHSASYYAIADNNVRLVCTLLNAG---ALKNLLENEFPLHQAATLEDTKIVKILL----- 82
Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAI 174
+G + DD+GNT L+ AV + + V++ VKK+ Y +T
Sbjct: 83 -FSGLDDSQ------FDDKGNTALYYAVDSGNXQTVKLFVKKNWRLXFYGKTGWKTSFYH 135
Query: 175 AIDSSLTDIACFIIDQRPDSLD 196
A+ + I + + + P + D
Sbjct: 136 AVXLNDVSIVSYFLSEIPSTFD 157
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 31/66 (46%)
Query: 49 STMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTI 108
S +GNT L+ A+ N + + +++ L +T + A + D +IVS
Sbjct: 89 SQFDDKGNTALYYAVDSGNXQTVKLFVKKNWRLXFYGKTGWKTSFYHAVXLNDVSIVSYF 148
Query: 109 LNYVPA 114
L+ +P+
Sbjct: 149 LSEIPS 154
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 48/113 (42%), Gaps = 15/113 (13%)
Query: 51 MSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKG---ETPLHIAARVGDPAIVST 107
++ G++ LH+AI + E++RQ L N + +TPLH+A P I
Sbjct: 1 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 60
Query: 108 ILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIP 160
+L G +PE + D GNTPLH A V +L + P
Sbjct: 61 LL--------GAGCDPE----LRDFRGNTPLHLACEQGCLASVGVLTQSCTTP 101
Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 61/142 (42%), Gaps = 17/142 (11%)
Query: 57 TVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAIT 116
T LH+A+ N I E L + +G TPLH+A G A V +
Sbjct: 44 TPLHLAV-ITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVL------TQ 96
Query: 117 NGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGY-INKAE----QTP 171
+ T S+L+ T+ G+T LH A + + +V +LV LG +N E +T
Sbjct: 97 SCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVS-----LGADVNAQEPCNGRTA 151
Query: 172 LAIAIDSSLTDIACFIIDQRPD 193
L +A+D D+ ++ D
Sbjct: 152 LHLAVDLQNPDLVSLLLKCGAD 173
Score = 30.4 bits (67), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 18/108 (16%)
Query: 54 RGNTVLHMAIRFRNHKVIPEILRQQ------DSLLRKHNLKGETPLHIAARVGDPAIVST 107
RGNT LH+A + +L Q S+L+ N G T LH+A+ G IV
Sbjct: 74 RGNTPLHLACE-QGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVEL 132
Query: 108 ILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVK 155
+++ + A N E G T LH AV ++ ++V +L+K
Sbjct: 133 LVS-LGADVNAQEP----------CNGRTALHLAVDLQNPDLVSLLLK 169
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 76/163 (46%), Gaps = 20/163 (12%)
Query: 24 ELLNVLRRGDEHQIRPIAGRMQNI--FSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSL 81
+LL R G + ++R + M N F+T G + LH+A ++ + +LR S
Sbjct: 5 KLLEAARAGQDDEVRIL---MANGAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGVSR 60
Query: 82 LRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNA 141
+ + TPLH+AA G IV +L + G + + +L++T LH A
Sbjct: 61 DARTKVD-RTPLHMAASEGHANIVEVLLKH------GADVNAKDMLKMT------ALHWA 107
Query: 142 VRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIA 184
+ H+ VV +L+K + +K +T I+ID+ D+A
Sbjct: 108 TEHNHQEVVELLIKYG-ADVHTQSKFCKTAFDISIDNGNEDLA 149
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 61/155 (39%), Gaps = 15/155 (9%)
Query: 18 PATMDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQ 77
P MD ++ R G+ +R +N + G + LH A R + E+L
Sbjct: 3 PEFMD-DIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACR-EGRSAVVEMLIM 60
Query: 78 QDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTP 137
+ + + N +TPLH+AA G IV +L Y I ++ GN P
Sbjct: 61 RGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADIN------------AVNEHGNVP 108
Query: 138 LHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPL 172
LH A + V LV + + NK + P+
Sbjct: 109 LHYACFWGQDQVAEDLVANGAL-VSICNKYGEMPV 142
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 50/109 (45%), Gaps = 19/109 (17%)
Query: 72 PEILRQQDSLLRKHN--LK---GETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESL 126
PEI R+ LLR N LK G +H AAR G + T+L + ++
Sbjct: 50 PEIARRL--LLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEF------------QAD 95
Query: 127 LRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIA 175
+ I D+EGN PLH A + H VV LVK +G+ N T +A
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 50/109 (45%), Gaps = 19/109 (17%)
Query: 72 PEILRQQDSLLRKHN--LK---GETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESL 126
PEI R+ LLR N LK G +H AAR G + T+L + ++
Sbjct: 50 PEIARRL--LLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEF------------QAD 95
Query: 127 LRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIA 175
+ I D+EGN PLH A + H VV LVK +G+ N T +A
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 13/102 (12%)
Query: 52 SPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNY 111
S GNT LH A + + + + ++L + + + + G TPLH+AA+ G IV +L
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLL-SKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL-- 62
Query: 112 VPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRML 153
G + S +GNTP H A +N H +V++L
Sbjct: 63 ----AKGADVNARS------KDGNTPEHLAKKNGHHEIVKLL 94
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 133 EGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRP 192
+GNTPLHNA +N H V+ L+ K + +K TPL +A + +I ++ +
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKG-ADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 193 D----SLDHRLPEELT 204
D S D PE L
Sbjct: 67 DVNARSKDGNTPEHLA 82
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 40.0 bits (92), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 50/109 (45%), Gaps = 19/109 (17%)
Query: 72 PEILRQQDSLLRKHN--LK---GETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESL 126
PEI R+ LLR N LK G +H AAR G + T+L + ++
Sbjct: 50 PEIARRL--LLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEF------------QAD 95
Query: 127 LRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIA 175
+ I D+EGN PLH A + H VV LVK +G+ N T +A
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 40.0 bits (92), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 50/109 (45%), Gaps = 19/109 (17%)
Query: 72 PEILRQQDSLLRKHN--LK---GETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESL 126
PEI R+ LLR N LK G +H AAR G + T+L + ++
Sbjct: 50 PEIARRL--LLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEF------------QAD 95
Query: 127 LRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIA 175
+ I D+EGN PLH A + H VV LVK +G+ N T +A
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 67/145 (46%), Gaps = 17/145 (11%)
Query: 32 GDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGET 91
G + ++ + G+ + + ++ G T LH A H++ +L + K + + T
Sbjct: 84 GRDEIVKALLGKGAQV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEA-T 141
Query: 92 PLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVR 151
+H AA G+ ++ +L Y A TN I D EGNTPLH A + +
Sbjct: 142 AMHRAAAKGNLKMIHILL-YYKASTN-----------IQDTEGNTPLHLACDEERVEEAK 189
Query: 152 MLVKKDRIPLGYI-NKAEQTPLAIA 175
+LV + YI NK E+TPL +A
Sbjct: 190 LLVSQGASI--YIENKEEKTPLQVA 212
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 42/98 (42%), Gaps = 14/98 (14%)
Query: 57 TVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAIT 116
T LH A H I E L Q + + G +PLHIAA G IV +L
Sbjct: 42 TALHWACS-AGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLG------ 94
Query: 117 NGTESEPESLLRITDDEGNTPLHNAV-RNKHENVVRML 153
G + + + G TPLH A +N+HE V +L
Sbjct: 95 KGAQ------VNAVNQNGCTPLHYAASKNRHEIAVMLL 126
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 45/125 (36%), Gaps = 37/125 (29%)
Query: 124 ESLLRITDDEGNTPLHNAVRNKHENVVRMLVK-----------------------KDRIP 160
+SL TD + T LH A H +V L++ +D I
Sbjct: 30 KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIV 89
Query: 161 LGYINKAEQ---------TPLAIAIDSSLTDIACFIID--QRPDSLDHRLPEELTLLHSA 209
+ K Q TPL A + +IA +++ PD+ DH E T +H A
Sbjct: 90 KALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHY---EATAMHRA 146
Query: 210 VMRQN 214
+ N
Sbjct: 147 AAKGN 151
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 67/145 (46%), Gaps = 17/145 (11%)
Query: 32 GDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGET 91
G + ++ + G+ + + ++ G T LH A H++ +L + K + + T
Sbjct: 85 GRDEIVKALLGKGAQV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEA-T 142
Query: 92 PLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVR 151
+H AA G+ ++ +L Y A TN I D EGNTPLH A + +
Sbjct: 143 AMHRAAAKGNLKMIHILL-YYKASTN-----------IQDTEGNTPLHLACDEERVEEAK 190
Query: 152 MLVKKDRIPLGYI-NKAEQTPLAIA 175
+LV + YI NK E+TPL +A
Sbjct: 191 LLVSQGASI--YIENKEEKTPLQVA 213
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 42/98 (42%), Gaps = 14/98 (14%)
Query: 57 TVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAIT 116
T LH A H I E L Q + + G +PLHIAA G IV +L
Sbjct: 43 TALHWACS-AGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLG------ 95
Query: 117 NGTESEPESLLRITDDEGNTPLHNAV-RNKHENVVRML 153
G + + + G TPLH A +N+HE V +L
Sbjct: 96 KGAQ------VNAVNQNGCTPLHYAASKNRHEIAVMLL 127
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 54/155 (34%), Gaps = 43/155 (27%)
Query: 100 GDPAIVSTILNYVPAITNGTESEPESLLRI------TDDEGNTPLHNAVRNKHENVVRML 153
G VS ++ A + E ES+L TD + T LH A H +V L
Sbjct: 1 GSEGCVSNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFL 60
Query: 154 VK-----------------------KDRIPLGYINKAEQ---------TPLAIAIDSSLT 181
++ +D I + K Q TPL A +
Sbjct: 61 LQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRH 120
Query: 182 DIACFIID--QRPDSLDHRLPEELTLLHSAVMRQN 214
+IA +++ PD+ DH E T +H A + N
Sbjct: 121 EIAVMLLEGGANPDAKDHY---EATAMHRAAAKGN 152
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 13/96 (13%)
Query: 89 GETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 148
G TPLH+AA++G IV +L Y G + E D+ G TPLH A H
Sbjct: 47 GLTPLHLAAQLGHLEIVEVLLKY------GADVNAE------DNFGITPLHLAAIRGHLE 94
Query: 149 VVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIA 184
+V +L+K + +K +T I+ID+ D+A
Sbjct: 95 IVEVLLKHGA-DVNAQDKFGKTAFDISIDNGNEDLA 129
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 3/115 (2%)
Query: 24 ELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLR 83
+LL R G + ++R + ++ + + G T LH+A + H I E+L + + +
Sbjct: 17 KLLEAARAGQDDEVRILMANGADV-NALDEDGLTPLHLAAQL-GHLEIVEVLLKYGADVN 74
Query: 84 KHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPL 138
+ G TPLH+AA G IV +L + A N + ++ I+ D GN L
Sbjct: 75 AEDNFGITPLHLAAIRGHLEIVEVLLKH-GADVNAQDKFGKTAFDISIDNGNEDL 128
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 50/109 (45%), Gaps = 19/109 (17%)
Query: 72 PEILRQQDSLLRKHN--LK---GETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESL 126
PEI R+ LLR N LK G +H AAR G + T+L E ++
Sbjct: 50 PEIARRL--LLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLL------------ENQAD 95
Query: 127 LRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIA 175
+ I D+EGN PLH A + H VV LVK +G+ N T +A
Sbjct: 96 VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 68/171 (39%), Gaps = 33/171 (19%)
Query: 55 GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNL------KGETPLHIAARVGDPAIVSTI 108
G LH ++ F+ H++ +L + +++ NL G TP HIA VG+ +V ++
Sbjct: 36 GRIPLHWSVSFQAHEITSFLLSKMENV----NLDDYPDDSGWTPFHIACSVGNLEVVKSL 91
Query: 109 LNY-----VPAITNGTES------------------EPESLLRITDDEGNTPLHNAVRNK 145
+ + ITN + E + +RI D PLH A
Sbjct: 92 YDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVG 151
Query: 146 HENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLD 196
++ +L + + + +K TPL A+ D A ++++ D
Sbjct: 152 SLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYD 202
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 56/135 (41%), Gaps = 10/135 (7%)
Query: 56 NTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAI 115
N LH A + E+L + SLL + + G PLH + I S +L
Sbjct: 3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLL------ 56
Query: 116 TNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIP-LGYINKAEQTPLAI 174
++ E +L DD G TP H A + VV+ L + P L I T L +
Sbjct: 57 ---SKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHL 113
Query: 175 AIDSSLTDIACFIID 189
A+ +++ F+I+
Sbjct: 114 AVGKKWFEVSQFLIE 128
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 58/149 (38%), Gaps = 14/149 (9%)
Query: 24 ELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLR 83
++ R G+ +R +N + G + LH A R + E+L + + +
Sbjct: 3 DIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACR-EGRSAVVEMLIMRGARIN 61
Query: 84 KHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVR 143
N +TPLH+AA G IV +L Y I ++ GN PLH A
Sbjct: 62 VMNRGDDTPLHLAASHGHRDIVQKLLQYKADIN------------AVNEHGNVPLHYACF 109
Query: 144 NKHENVVRMLVKKDRIPLGYINKAEQTPL 172
+ V LV + + NK + P+
Sbjct: 110 WGQDQVAEDLVANGAL-VSICNKYGEMPV 137
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 68/171 (39%), Gaps = 33/171 (19%)
Query: 55 GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNL------KGETPLHIAARVGDPAIVSTI 108
G LH ++ F+ H++ +L + +++ NL G TP HIA VG+ +V ++
Sbjct: 36 GRIPLHWSVSFQAHEITSFLLSKMENV----NLDDYPDDSGWTPFHIACSVGNLEVVKSL 91
Query: 109 LNY-----VPAITNGTES------------------EPESLLRITDDEGNTPLHNAVRNK 145
+ + ITN + E + +RI D PLH A
Sbjct: 92 YDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVG 151
Query: 146 HENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLD 196
++ +L + + + +K TPL A+ D A ++++ D
Sbjct: 152 SLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYD 202
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 56/135 (41%), Gaps = 10/135 (7%)
Query: 56 NTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAI 115
N LH A + E+L + SLL + + G PLH + I S +L
Sbjct: 3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLL------ 56
Query: 116 TNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIP-LGYINKAEQTPLAI 174
++ E +L DD G TP H A + VV+ L + P L I T L +
Sbjct: 57 ---SKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHL 113
Query: 175 AIDSSLTDIACFIID 189
A+ +++ F+I+
Sbjct: 114 AVGKKWFEVSQFLIE 128
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 13/111 (11%)
Query: 74 ILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDE 133
IL + + ++ G TPLH+AA +G IV +L NG + + T +
Sbjct: 32 ILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLL------KNGAD------VNATGNT 79
Query: 134 GNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIA 184
G TPLH A H +V +L+K + +K +T I+ID+ D+A
Sbjct: 80 GRTPLHLAAWADHLEIVEVLLKH-GADVNAQDKFGKTAFDISIDNGNEDLA 129
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 3/115 (2%)
Query: 24 ELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLR 83
+LL R G + ++R + ++ + G+T LH+A H I E+L + + +
Sbjct: 17 KLLEAARAGQDDEVRILTANGADVNAN-DYWGHTPLHLAAML-GHLEIVEVLLKNGADVN 74
Query: 84 KHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPL 138
G TPLH+AA IV +L + A N + ++ I+ D GN L
Sbjct: 75 ATGNTGRTPLHLAAWADHLEIVEVLLKH-GADVNAQDKFGKTAFDISIDNGNEDL 128
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 68/171 (39%), Gaps = 33/171 (19%)
Query: 55 GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNL------KGETPLHIAARVGDPAIVSTI 108
G LH ++ F+ H++ +L + +++ NL G TP HIA VG+ +V ++
Sbjct: 36 GRIPLHWSVSFQAHEITSFLLSKMENV----NLDDYPDDSGWTPFHIACSVGNLEVVKSL 91
Query: 109 LNY-----VPAITNGTES------------------EPESLLRITDDEGNTPLHNAVRNK 145
+ + ITN + E + +RI D PLH A
Sbjct: 92 YDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVG 151
Query: 146 HENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLD 196
++ +L + + + +K TPL A+ D A ++++ D
Sbjct: 152 SLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYD 202
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 56/135 (41%), Gaps = 10/135 (7%)
Query: 56 NTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAI 115
N LH A + E+L + SLL + + G PLH + I S +L
Sbjct: 3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLL------ 56
Query: 116 TNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIP-LGYINKAEQTPLAI 174
++ E +L DD G TP H A + VV+ L + P L I T L +
Sbjct: 57 ---SKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHL 113
Query: 175 AIDSSLTDIACFIID 189
A+ +++ F+I+
Sbjct: 114 AVGKKWFEVSQFLIE 128
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 13/101 (12%)
Query: 54 RGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVP 113
RG T+LH+A + E L Q S + G TPLH A G +V +L +
Sbjct: 9 RGETLLHIA-SIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQH-- 65
Query: 114 AITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLV 154
++L+ T + ++PLH+A +N H ++V++L+
Sbjct: 66 ----------KALVNTTGYQNDSPLHDAAKNGHVDIVKLLL 96
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 49/105 (46%), Gaps = 17/105 (16%)
Query: 86 NLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNK 145
N +GET LHIA+ GD V +L NG S+P + D G TPLH A +
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQ------NG--SDP----NVKDHAGWTPLHEACNHG 54
Query: 146 HENVVRMLVKKDRI--PLGYINKAEQTPLAIAIDSSLTDIACFII 188
H VV +L++ + GY N +PL A + DI ++
Sbjct: 55 HLKVVELLLQHKALVNTTGYQN---DSPLHDAAKNGHVDIVKLLL 96
Score = 33.9 bits (76), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 55 GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNY 111
G T LH A + KV+ E+L Q +L+ + ++PLH AA+ G IV +L+Y
Sbjct: 43 GWTPLHEACNHGHLKVV-ELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSY 98
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 12/106 (11%)
Query: 70 VIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRI 129
VI + + Q SL + + GET LH+AAR +L E + I
Sbjct: 38 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLL------------EASADANI 85
Query: 130 TDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIA 175
D+ G TPLH AV + V ++L++ L TPL +A
Sbjct: 86 QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILA 131
Score = 30.0 bits (66), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 64/154 (41%), Gaps = 17/154 (11%)
Query: 55 GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
G T LH A+ V ++R + + L G TPL +AAR+ ++ ++N
Sbjct: 90 GRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLIN---- 145
Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAI 174
+ + DD G + LH A + + +L+ K+ N E+TPL +
Sbjct: 146 --------SHADVNAVDDLGKSALHWAAAVNNVDAAVVLL-KNGANKDMQNNREETPLFL 196
Query: 175 AIDSSLTDIACFIIDQRP--DSLDH--RLPEELT 204
A + A ++D D DH RLP ++
Sbjct: 197 AAREGSYETAKVLLDHFANRDITDHMDRLPRDIA 230
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 47/118 (39%), Gaps = 3/118 (2%)
Query: 89 GETPLHIAARVGDPAIV--STILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH 146
G TPL IA+ G S PA+ + + SL TD G T LH A R
Sbjct: 10 GFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSR 69
Query: 147 ENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELT 204
+ + L++ + +TPL A+ + + +I R LD R+ + T
Sbjct: 70 SDAAKRLLEA-SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTT 126
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 12/106 (11%)
Query: 70 VIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRI 129
VI + + Q SL + + GET LH+AAR +L E + I
Sbjct: 39 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLL------------EASADANI 86
Query: 130 TDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIA 175
D+ G TPLH AV + V ++L++ L TPL +A
Sbjct: 87 QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILA 132
Score = 30.0 bits (66), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 64/154 (41%), Gaps = 17/154 (11%)
Query: 55 GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
G T LH A+ V ++R + + L G TPL +AAR+ ++ ++N
Sbjct: 91 GRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLIN---- 146
Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAI 174
+ + DD G + LH A + + +L+ K+ N E+TPL +
Sbjct: 147 --------SHADVNAVDDLGKSALHWAAAVNNVDAAVVLL-KNGANKDMQNNREETPLFL 197
Query: 175 AIDSSLTDIACFIIDQRP--DSLDH--RLPEELT 204
A + A ++D D DH RLP ++
Sbjct: 198 AAREGSYETAKVLLDHFANRDITDHMDRLPRDIA 231
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 47/118 (39%), Gaps = 3/118 (2%)
Query: 89 GETPLHIAARVGDPAIV--STILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKH 146
G TPL IA+ G S PA+ + + SL TD G T LH A R
Sbjct: 11 GFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSR 70
Query: 147 ENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELT 204
+ + L++ + +TPL A+ + + +I R LD R+ + T
Sbjct: 71 SDAAKRLLEA-SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTT 127
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 12/106 (11%)
Query: 70 VIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRI 129
VI + + Q SL + + GET LH+AAR +L E + I
Sbjct: 6 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLL------------EASADANI 53
Query: 130 TDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIA 175
D+ G TPLH AV + V ++L++ L TPL +A
Sbjct: 54 QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILA 99
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 64/154 (41%), Gaps = 17/154 (11%)
Query: 55 GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
G T LH A+ V ++R + + L G TPL +AAR+ ++ ++N
Sbjct: 58 GRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLIN---- 113
Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAI 174
+ + DD G + LH A + + +L+ K+ N E+TPL +
Sbjct: 114 --------SHADVNAVDDLGKSALHWAAAVNNVDAAVVLL-KNGANKDMQNNREETPLFL 164
Query: 175 AIDSSLTDIACFIIDQRP--DSLDH--RLPEELT 204
A + A ++D D DH RLP ++
Sbjct: 165 AAREGSYETAKVLLDHFANRDITDHMDRLPRDIA 198
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 1/93 (1%)
Query: 112 VPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTP 171
PA+ + + SL TD G T LH A R + + L++ + +TP
Sbjct: 3 APAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEA-SADANIQDNMGRTP 61
Query: 172 LAIAIDSSLTDIACFIIDQRPDSLDHRLPEELT 204
L A+ + + +I R LD R+ + T
Sbjct: 62 LHAAVSADAQGVFQILIRNRATDLDARMHDGTT 94
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 12/127 (9%)
Query: 67 NHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESL 126
NH + L + +L+ + +G T LH+AA+ G +V +L +NG
Sbjct: 55 NHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLL------SNGQMD----- 103
Query: 127 LRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACF 186
+ DD G TP+ A KH ++V++L+ K + + E L A S DIA
Sbjct: 104 VNCQDDGGWTPMIWATEYKHVDLVKLLLSKGS-DINIRDNEENICLHWAAFSGCVDIAEI 162
Query: 187 IIDQRPD 193
++ + D
Sbjct: 163 LLAAKCD 169
Score = 35.0 bits (79), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 54/142 (38%), Gaps = 22/142 (15%)
Query: 91 TPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRIT-------------------- 130
+PLH AA G I ++ I +E + L+
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP 72
Query: 131 -DDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIID 189
D EG+T LH A + H VV+ L+ ++ + + TP+ A + D+ ++
Sbjct: 73 KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLS 132
Query: 190 QRPDSLDHRLPEELTLLHSAVM 211
+ D ++ R EE LH A
Sbjct: 133 KGSD-INIRDNEENICLHWAAF 153
Score = 33.9 bits (76), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 36/89 (40%), Gaps = 13/89 (14%)
Query: 56 NTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAI 115
N LH A F I EIL L N+ G++PLHIAAR V L+ +
Sbjct: 145 NICLHWA-AFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDV 203
Query: 116 TNGTESEPESLLRITDDEGNTPLHNAVRN 144
T + + EG TPL A N
Sbjct: 204 T------------LKNKEGETPLQCASLN 220
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 59/145 (40%), Gaps = 24/145 (16%)
Query: 53 PRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYV 112
G+T LH+A + +++V+ +L + + G TP+ A +V +L+
Sbjct: 75 AEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKG 134
Query: 113 PAIT---------------NGTESEPESLLRITDD------EGNTPLHNAVR-NKHENVV 150
I +G E LL D G++PLH A R N+++ VV
Sbjct: 135 SDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVV 194
Query: 151 RMLVKKDRIPLGYINKAEQTPLAIA 175
L + + L NK +TPL A
Sbjct: 195 LFLSRDSDVTLK--NKEGETPLQCA 217
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 52/125 (41%), Gaps = 12/125 (9%)
Query: 69 KVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLR 128
VI + + Q SL + + GET LH+AAR +L E +
Sbjct: 2 SVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLL------------EASADAX 49
Query: 129 ITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFII 188
I D+ G TPLH AV + V ++L++ L TPL +A +L + +I
Sbjct: 50 IQDNMGRTPLHAAVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLI 109
Query: 189 DQRPD 193
+ D
Sbjct: 110 NSHAD 114
Score = 30.8 bits (68), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 64/154 (41%), Gaps = 17/154 (11%)
Query: 55 GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
G T LH A+ V +LR + + L G TPL +AAR+ ++ ++N
Sbjct: 55 GRTPLHAAVSADAQGVFQILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLIN---- 110
Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAI 174
+ + DD G + LH A + + +L+ K+ N E+TPL +
Sbjct: 111 --------SHADVNAVDDLGKSALHWAAAVNNVDAAVVLL-KNGANKDMQNNKEETPLFL 161
Query: 175 AIDSSLTDIACFIIDQRP--DSLDH--RLPEELT 204
A + A ++D D DH RLP ++
Sbjct: 162 AAREGSYETAKVLLDHFANRDITDHMDRLPRDIA 195
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 3/115 (2%)
Query: 24 ELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLR 83
+LL R G + ++R + ++ + G T LH+A +H I E+L + + +
Sbjct: 17 KLLEAARAGQDDEVRILMANGADV-NAEDKVGLTPLHLA-AMNDHLEIVEVLLKNGADVN 74
Query: 84 KHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPL 138
+ GETPLH+ A G IV +L + A N + ++ I+ D GN L
Sbjct: 75 AIDAIGETPLHLVAMYGHLEIVEVLLKH-GADVNAQDKFGKTAFDISIDNGNEDL 128
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 13/96 (13%)
Query: 89 GETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 148
G TPLH+AA IV +L NG + + D G TPLH H
Sbjct: 47 GLTPLHLAAMNDHLEIVEVLL------KNGAD------VNAIDAIGETPLHLVAMYGHLE 94
Query: 149 VVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIA 184
+V +L+K + +K +T I+ID+ D+A
Sbjct: 95 IVEVLLKHGA-DVNAQDKFGKTAFDISIDNGNEDLA 129
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 13/96 (13%)
Query: 59 LHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNG 118
LH+A + + H + + L ++ K +L G TPL A G +V+ +L + +I
Sbjct: 123 LHLACQ-QGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASIN-- 179
Query: 119 TESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLV 154
++++GNT LH AV KH VV +L+
Sbjct: 180 ----------ASNNKGNTALHEAVIEKHVFVVELLL 205
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 56/129 (43%), Gaps = 20/129 (15%)
Query: 89 GETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 148
G +PLH+AA G ++ +L + G + +++ PLH A + H
Sbjct: 86 GSSPLHVAALHGRADLIPLLLKH--GANAGARNADQAV----------PLHLACQQGHFQ 133
Query: 149 VVRMLVKKDRIPLGYINKAE---QTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTL 205
VV+ L+ + P NK + TPL A ++ ++ Q S++ + T
Sbjct: 134 VVKCLLDSNAKP----NKKDLSGNTPLIYACSGGHHELVALLL-QHGASINASNNKGNTA 188
Query: 206 LHSAVMRQN 214
LH AV+ ++
Sbjct: 189 LHEAVIEKH 197
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 41/98 (41%), Gaps = 14/98 (14%)
Query: 57 TVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAIT 116
T LH A H I E L Q + + G +PLHIAA G IV +L
Sbjct: 42 TALHWACS-AGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALL------V 94
Query: 117 NGTESEPESLLRITDDEGNTPLHNAV-RNKHENVVRML 153
G + + G TPLH A +N+HE V +L
Sbjct: 95 KGAH------VNAVNQNGCTPLHYAASKNRHEIAVMLL 126
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 57/137 (41%), Gaps = 18/137 (13%)
Query: 80 SLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLH 139
SL + + T LH A G IV +L + + DD G +PLH
Sbjct: 31 SLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND------------KDDAGWSPLH 78
Query: 140 NAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIID--QRPDSLDH 197
A + +V+ L+ K + +N+ TPL A + +IA +++ PD+ DH
Sbjct: 79 IAASAGXDEIVKALLVKGA-HVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH 137
Query: 198 RLPEELTLLHSAVMRQN 214
+ T +H A + N
Sbjct: 138 Y---DATAMHRAAAKGN 151
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 57/128 (44%), Gaps = 16/128 (12%)
Query: 49 STMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTI 108
+ ++ G T LH A H++ +L + K + T +H AA G+ +V +
Sbjct: 100 NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDA-TAMHRAAAKGNLKMVHIL 158
Query: 109 LNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYI-NKA 167
L Y A TN I D EGNTPLH A + + LV + YI NK
Sbjct: 159 LFY-KASTN-----------IQDTEGNTPLHLACDEERVEEAKFLVTQGASI--YIENKE 204
Query: 168 EQTPLAIA 175
E+TPL +A
Sbjct: 205 EKTPLQVA 212
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 124 ESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDI 183
+SL TD + T LH A H +V L++ +P+ + A +PL IA + +I
Sbjct: 30 KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG-VPVNDKDDAGWSPLHIAASAGXDEI 88
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 57/137 (41%), Gaps = 18/137 (13%)
Query: 80 SLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLH 139
SL + + T LH A G IV +L + + DD G +PLH
Sbjct: 31 SLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND------------KDDAGWSPLH 78
Query: 140 NAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIID--QRPDSLDH 197
A + +V+ L+ K + +N+ TPL A + +IA +++ PD+ DH
Sbjct: 79 IAASAGRDEIVKALLVKG-AHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH 137
Query: 198 RLPEELTLLHSAVMRQN 214
+ T +H A + N
Sbjct: 138 Y---DATAMHRAAAKGN 151
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 41/98 (41%), Gaps = 14/98 (14%)
Query: 57 TVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAIT 116
T LH A H I E L Q + + G +PLHIAA G IV +L
Sbjct: 42 TALHWACS-AGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALL------V 94
Query: 117 NGTESEPESLLRITDDEGNTPLHNAV-RNKHENVVRML 153
G + + G TPLH A +N+HE V +L
Sbjct: 95 KGAH------VNAVNQNGCTPLHYAASKNRHEIAVMLL 126
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 57/128 (44%), Gaps = 16/128 (12%)
Query: 49 STMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTI 108
+ ++ G T LH A H++ +L + K + T +H AA G+ +V +
Sbjct: 100 NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDA-TAMHRAAAKGNLKMVHIL 158
Query: 109 LNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYI-NKA 167
L Y A TN I D EGNTPLH A + + LV + YI NK
Sbjct: 159 LFY-KASTN-----------IQDTEGNTPLHLACDEERVEEAKFLVTQGASI--YIENKE 204
Query: 168 EQTPLAIA 175
E+TPL +A
Sbjct: 205 EKTPLQVA 212
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 124 ESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDI 183
+SL TD + T LH A H +V L++ +P+ + A +PL IA + +I
Sbjct: 30 KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG-VPVNDKDDAGWSPLHIAASAGRDEI 88
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 119 TESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDS 178
T E E+++ TD+EG TPL A + VV L++ P + K ++ L++A
Sbjct: 37 TRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ-LLGKGRESALSLACSK 95
Query: 179 SLTDIACFIIDQRPD 193
TDI ++D D
Sbjct: 96 GYTDIVKMLLDCGVD 110
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 119 TESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDS 178
T E E+++ TD+EG TPL A + VV L++ P + K ++ L++A
Sbjct: 21 TRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ-LLGKGRESALSLACSK 79
Query: 179 SLTDIACFIIDQRPD 193
TDI ++D D
Sbjct: 80 GYTDIVKMLLDCGVD 94
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 119 TESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDS 178
T E E+++ TD+EG TPL A + VV L++ P + K ++ L++A
Sbjct: 19 TRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ-LLGKGRESALSLACSK 77
Query: 179 SLTDIACFIIDQRPD 193
TDI ++D D
Sbjct: 78 GYTDIVKMLLDCGVD 92
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 59/125 (47%), Gaps = 12/125 (9%)
Query: 89 GETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHEN 148
G+TPLHIA G+ V ++N G E L I ++ TPLH AV +
Sbjct: 9 GDTPLHIAVVQGNLPAVHRLVNLFQ--QGGRE------LDIYNNLRQTPLHLAVITTLPS 60
Query: 149 VVRMLVKKDRIPLGYINKAEQTPLAIAID-SSLTDIACFIIDQRPDSLD--HRLPEELTL 205
VVR+LV P+ +++ QT +A + S T + + P +LD R + LT
Sbjct: 61 VVRLLVTAGASPMA-LDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTA 119
Query: 206 LHSAV 210
LH AV
Sbjct: 120 LHVAV 124
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 130 TDDEGNTPLHNAVRNKHENVVRMLV---KKDRIPLGYINKAEQTPLAIAIDSSLTDIACF 186
D++G+TPLH AV + V LV ++ L N QTPL +A+ ++L +
Sbjct: 5 ADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRL 64
Query: 187 II--DQRPDSLD 196
++ P +LD
Sbjct: 65 LVTAGASPMALD 76
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 41/101 (40%), Gaps = 14/101 (13%)
Query: 57 TVLHMAIRF--RNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
T LH+A+R R I + L Q L K KG T LH + + +L +
Sbjct: 171 TALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKAS 230
Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVK 155
I I ++ G TPL A R KHE+ +L +
Sbjct: 231 I------------EIANESGETPLDIAKRLKHEHCEELLTQ 259
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 58/132 (43%), Gaps = 14/132 (10%)
Query: 24 ELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLR 83
+LL G + ++R + ++ +T G T LH+A +++ E+L + + +
Sbjct: 9 KLLEAAAAGQDDEVRILMANGADVNAT-DDNGLTPLHLAAANGQLEIV-EVLLKNGADVN 66
Query: 84 KHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVR 143
+ G TPLH+AA G IV +L + + D G TPLH A
Sbjct: 67 ASDSAGITPLHLAAYDGHLEIVEVLLKHGADV------------NAYDRAGWTPLHLAAL 114
Query: 144 NKHENVVRMLVK 155
+ +V +L+K
Sbjct: 115 SGQLEIVEVLLK 126
Score = 33.5 bits (75), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 55 GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNY 111
G T LH+A + H I E+L + + + ++ G TPLH+AA G IV +L +
Sbjct: 72 GITPLHLA-AYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKH 127
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 35.0 bits (79), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 13/92 (14%)
Query: 84 KHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVR 143
+H G T LH+AA G ++ ++ + + I D +G TPLH A
Sbjct: 194 RHAKSGGTALHVAAAKGYTEVLKLLI------------QARYDVNIKDYDGWTPLHAAAH 241
Query: 144 NKHENVVRMLVKKDRIPLGYINKAEQTPLAIA 175
E R+LV ++ + +NK QT +A
Sbjct: 242 WGKEEACRILV-ENLCDMEAVNKVGQTAFDVA 272
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 34.7 bits (78), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 74/168 (44%), Gaps = 16/168 (9%)
Query: 55 GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVG-DPAIVSTILNYVP 113
G+T LH+A R R H +L+ + S R +T L + D + ++ P
Sbjct: 78 GHTALHLACRVRAHTCACVLLQPRPSHPRD---ASDTYLTQSQDCTPDTSHAPAAVDSQP 134
Query: 114 AITNGTESEPESL---LRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAE-- 168
N E E L + +G+TPLH AV +K +VR+L R +NK E
Sbjct: 135 NPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLL----RDAGADLNKPEPT 190
Query: 169 --QTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQN 214
+TPL +A+++ + ++ D R+ T L SA++R N
Sbjct: 191 CGRTPLHLAVEAQAASVLELLLKAGADPT-ARMYGGRTPLGSALLRPN 237
Score = 31.2 bits (69), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 48/111 (43%), Gaps = 14/111 (12%)
Query: 47 IFSTMSPRGNTVLHMAIRFRNHKVIPEIL--RQQDSLLRKHNLKGETPLHIAARVGDPAI 104
+F ++ G+T LH+A+ ++ + +L L N G+T LH+AA +G+ +
Sbjct: 1 VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST 60
Query: 105 VSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVK 155
V + + + + G+T LH A R + +L++
Sbjct: 61 VEKLYAAGAGVL------------VAERGGHTALHLACRVRAHTCACVLLQ 99
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 34.7 bits (78), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 74/168 (44%), Gaps = 16/168 (9%)
Query: 55 GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVG-DPAIVSTILNYVP 113
G+T LH+A R R H +L+ + S R +T L + D + ++ P
Sbjct: 78 GHTALHLACRVRAHTCACVLLQPRPSHPRD---ASDTYLTQSQDCTPDTSHAPAAVDSQP 134
Query: 114 AITNGTESEPESL---LRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAE-- 168
N E E L + +G+TPLH AV +K +VR+L R +NK E
Sbjct: 135 NPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLL----RDAGADLNKPEPT 190
Query: 169 --QTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLLHSAVMRQN 214
+TPL +A+++ + ++ D R+ T L SA++R N
Sbjct: 191 CGRTPLHLAVEAQAASVLELLLKAGADPT-ARMYGGRTPLGSALLRPN 237
Score = 31.2 bits (69), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 48/111 (43%), Gaps = 14/111 (12%)
Query: 47 IFSTMSPRGNTVLHMAIRFRNHKVIPEIL--RQQDSLLRKHNLKGETPLHIAARVGDPAI 104
+F ++ G+T LH+A+ ++ + +L L N G+T LH+AA +G+ +
Sbjct: 1 VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST 60
Query: 105 VSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVK 155
V + + + + G+T LH A R + +L++
Sbjct: 61 VEKLYAAGAGVL------------VAERGGHTALHLACRVRAHTCACVLLQ 99
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 34.3 bits (77), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 43/106 (40%), Gaps = 12/106 (11%)
Query: 70 VIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRI 129
VI + + Q SL + + G T LH+AA +L E + I
Sbjct: 38 VISDFIYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLL------------EASADANI 85
Query: 130 TDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIA 175
D+ G TPLH AV + V ++L++ L TPL +A
Sbjct: 86 QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILA 131
Score = 30.0 bits (66), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 64/154 (41%), Gaps = 17/154 (11%)
Query: 55 GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
G T LH A+ V ++R + + L G TPL +AAR+ ++ ++N
Sbjct: 90 GRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLIN---- 145
Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAI 174
+ + DD G + LH A + + +L+ K+ N E+TPL +
Sbjct: 146 --------SHADVNAVDDLGKSALHWAAAVNNVDAAVVLL-KNGANKDMQNNREETPLFL 196
Query: 175 AIDSSLTDIACFIIDQRP--DSLDH--RLPEELT 204
A + A ++D D DH RLP ++
Sbjct: 197 AAREGSYETAKVLLDHFANRDITDHMDRLPRDIA 230
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 34.3 bits (77), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 65/145 (44%), Gaps = 16/145 (11%)
Query: 31 RGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGE 90
RGD ++R + R ++ G T L + + F + V E+L+Q S + G
Sbjct: 18 RGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSPAVALELLKQGASP-NVQDASGT 75
Query: 91 TPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVV 150
+P+H AAR G L+ + + E + + D G+ P+H A+R H +VV
Sbjct: 76 SPVHDAARTG-------FLDTLKVLV-----EHGADVNALDSTGSLPIHLAIREGHSSVV 123
Query: 151 RMLVKKDRIPLGYINKAEQTPLAIA 175
L + L + + + TPL +A
Sbjct: 124 SFLAPES--DLHHRDASGLTPLELA 146
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 34.3 bits (77), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 65/145 (44%), Gaps = 16/145 (11%)
Query: 31 RGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGE 90
RGD ++R + R ++ G T L + + F + V E+L+Q S + G
Sbjct: 20 RGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSPAVALELLKQGASP-NVQDASGT 77
Query: 91 TPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVV 150
+P+H AAR G L+ + + E + + D G+ P+H A+R H +VV
Sbjct: 78 SPVHDAARTG-------FLDTLKVLV-----EHGADVNALDSTGSLPIHLAIREGHSSVV 125
Query: 151 RMLVKKDRIPLGYINKAEQTPLAIA 175
L + L + + + TPL +A
Sbjct: 126 SFLAPES--DLHHRDASGLTPLELA 148
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 33.9 bits (76), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Query: 16 ELPATMDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEIL 75
E ++D+ L +RG+ +R + + + G+T L+ A + ++ +
Sbjct: 68 EQAESIDNPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHKDIVEXLF 126
Query: 76 RQQDSLLRKHNLKGETPLHIAARVGDPAIVSTIL 109
Q + L + N G+T LH AA G IV +L
Sbjct: 127 TQPNIELNQQNKLGDTALHAAAWKGYADIVQLLL 160
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 33.9 bits (76), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 131 DDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIA 184
D G+TPLH A RN H VV++L++ + +K +T I+ID+ D+A
Sbjct: 36 DKNGSTPLHLAARNGHLEVVKLLLEA-GADVNAQDKFGKTAFDISIDNGNEDLA 88
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 89 GETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPL 138
G TPLH+AAR G +V +L A N + ++ I+ D GN L
Sbjct: 39 GSTPLHLAARNGHLEVVKLLLE-AGADVNAQDKFGKTAFDISIDNGNEDL 87
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 33.9 bits (76), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 131 DDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIA 184
D G+TPLH A RN H VV++L++ + +K +T I+ID+ D+A
Sbjct: 54 DKNGSTPLHLAARNGHLEVVKLLLEA-GADVXAQDKFGKTAFDISIDNGNEDLA 106
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 33.5 bits (75), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 11/100 (11%)
Query: 59 LHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNG 118
L +A + + + + ++L+ + + + GET LHIAA + ++ P +
Sbjct: 7 LLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV-- 64
Query: 119 TESEPESLLRITDD--EGNTPLHNAVRNKHENVVRMLVKK 156
EP +T + EG T LH AV N++ N+VR L+ +
Sbjct: 65 --FEP-----MTSELYEGQTALHIAVINQNVNLVRALLAR 97
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 33.5 bits (75), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 21/107 (19%)
Query: 71 IPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNY--------------VPAIT 116
+ E LR+ D+L+ K + +G TPL A+ G+ V +L + + +
Sbjct: 18 LKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLAS 77
Query: 117 NGTESEPESLL-------RITDDEGNTPLHNAVRNKHENVVRMLVKK 156
G ++ LL I D G TPL AVR H V L+ +
Sbjct: 78 TGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLAR 124
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 9/56 (16%)
Query: 70 VIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYV--PAITNGTESEP 123
+I +L QDS G+T L+IAAR+G+ +IV +L+Y P I N + P
Sbjct: 271 IIANMLNAQDS-------NGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRP 319
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 55 GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
G T LH AI N+ ++ + L + + + G TPLH AA D I ++ + A
Sbjct: 54 GITALHNAICGANYSIV-DFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAA 112
Query: 115 ITNGTESEPESLLRITD 131
I T S+ + D
Sbjct: 113 IFATTLSDGATAFEKCD 129
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 10/86 (11%)
Query: 90 ETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENV 149
E LH+A +V + A + +++++ I NG + ++ +GNT LH A +
Sbjct: 172 ELVLHLAVKVANQASLP-LVDFI--IQNGGHLDAKAA------DGNTALHYAALYNQPDC 222
Query: 150 VRMLVKKDRIPLGYINKAEQTPLAIA 175
+++L+ K R +G +N+A +T L IA
Sbjct: 223 LKLLL-KGRALVGTVNEAGETALDIA 247
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 32.3 bits (72), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 10/86 (11%)
Query: 90 ETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENV 149
E LH+A +V + A + +++++ I NG + ++ +GNT LH A +
Sbjct: 191 ELVLHLAVKVANQASLP-LVDFI--IQNGGHLDAKAA------DGNTALHYAALYNQPDC 241
Query: 150 VRMLVKKDRIPLGYINKAEQTPLAIA 175
+++L+ K R +G +N+A +T L IA
Sbjct: 242 LKLLL-KGRALVGTVNEAGETALDIA 266
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 131 DDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIID 189
+DEG T LHNAV H +V+ LV+ + + + TPL A + + F+++
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQFG-VNVNAADSDGWTPLHCAASCNNVQVCKFLVE 124
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 31/56 (55%)
Query: 54 RGNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTIL 109
+G T LH A + N ++ ++ ++ S K + G+TP+ +AA+ G +V ++
Sbjct: 278 KGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLI 333
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 129 ITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFII 188
+ +DEG T LHNAV H +V+ LV+ + + + TPL A + + F++
Sbjct: 65 LPNDEGITALHNAVCAGHTEIVKFLVQFG-VNVNAADSDGWTPLHCAASCNNVQVCKFLV 123
Query: 189 D 189
+
Sbjct: 124 E 124
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 48/112 (42%), Gaps = 24/112 (21%)
Query: 54 RGNTVLHMAIRFRNHKVIPEIL--------RQQDSLLRKHN----LKGETPLHIAARVGD 101
RG++ LH+AI R+ + + ++ R +K GE PL +AA
Sbjct: 94 RGHSALHIAIEKRSLQCVKLLVENGANVHARACGRFFQKGQGTCFYFGELPLSLAACTKQ 153
Query: 102 PAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVR---NKHENVV 150
+VS +L +P SL + TD +GNT LH V N EN+
Sbjct: 154 WDVVSYLLE--------NPHQPASL-QATDSQGNTVLHALVXISDNSAENIA 196
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 3/118 (2%)
Query: 21 MDHELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDS 80
+ +LL R G + ++R + ++ + G T L++A H I E+L + +
Sbjct: 14 LGKKLLEAARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATA-HGHLEIVEVLLKNGA 71
Query: 81 LLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPL 138
+ + G TPLH+AA +G I +L + A N + ++ I+ GN L
Sbjct: 72 DVNAVDAIGFTPLHLAAFIGHLEIAEVLLKH-GADVNAQDKFGKTAFDISIGNGNEDL 128
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 59/162 (36%), Gaps = 17/162 (10%)
Query: 3 EFGT---DYKEPTMDQELPATMDH-ELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTV 58
EFG D +P+ L ELL R G+E ++ + + R +T
Sbjct: 2 EFGKSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTP 61
Query: 59 LHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNG 118
LH+A + +++ ++L Q + + + G PLH A G + +L + +
Sbjct: 62 LHLAAGYNRVRIV-QLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVN-- 118
Query: 119 TESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIP 160
D TPLH A V +L+ P
Sbjct: 119 ----------AMDLWQFTPLHEAASKNRVEVCSLLLSHGADP 150
Score = 31.2 bits (69), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 40/103 (38%), Gaps = 13/103 (12%)
Query: 91 TPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVV 150
TPLH+AA IV +L + + D G PLHNA H V
Sbjct: 60 TPLHLAAGYNRVRIVQLLLQHGADV------------HAKDKGGLVPLHNACSYGHYEVT 107
Query: 151 RMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFIIDQRPD 193
+L+K + ++ + TPL A + ++ ++ D
Sbjct: 108 ELLLKHGAC-VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGAD 149
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 55/141 (39%), Gaps = 17/141 (12%)
Query: 23 HELLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGN-TVLHMAIRFRN--HKVIPEILRQQD 79
H LL R D +++ I + P+ + T LH A+ + K + E+L ++
Sbjct: 180 HSLLQAAREADLAKVKKTLAL--EIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKG 237
Query: 80 SLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLH 139
+ + + N TPLH+AA ++ + + + + D G T LH
Sbjct: 238 ANVNEKNKDFMTPLHVAAERAHNDVMEVLHKH------------GAKMNALDSLGQTALH 285
Query: 140 NAVRNKHENVVRMLVKKDRIP 160
A H R+L+ P
Sbjct: 286 RAALAGHLQTCRLLLSYGSDP 306
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 30.8 bits (68), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 21/107 (19%)
Query: 71 IPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNY--------------VPAIT 116
+ E LR+ D+L+ K + +G TPL A+ G+ V +L + + +
Sbjct: 18 LKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLAS 77
Query: 117 NGTESEPESLL-------RITDDEGNTPLHNAVRNKHENVVRMLVKK 156
G ++ LL I D G TPL AV H V L+ +
Sbjct: 78 TGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEALLAR 124
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 30.8 bits (68), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 12/65 (18%)
Query: 91 TPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVV 150
TPLH AA ++V +L + + D G PLHNA H V
Sbjct: 48 TPLHFAAGYNRVSVVEYLLQHGADV------------HAKDKGGLVPLHNACSYGHYEVA 95
Query: 151 RMLVK 155
+LVK
Sbjct: 96 ELLVK 100
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 30.8 bits (68), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 12/65 (18%)
Query: 91 TPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVV 150
TPLH AA ++V +L + + D G PLHNA H V
Sbjct: 46 TPLHFAAGYNRVSVVEYLLQHGADV------------HAKDKGGLVPLHNACSYGHYEVA 93
Query: 151 RMLVK 155
+LVK
Sbjct: 94 ELLVK 98
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 30.8 bits (68), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 12/65 (18%)
Query: 91 TPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVV 150
TPLH AA ++V +L + + D G PLHNA H V
Sbjct: 44 TPLHFAAGYNRVSVVEYLLQHGADV------------HAKDKGGLVPLHNACSYGHYEVA 91
Query: 151 RMLVK 155
+LVK
Sbjct: 92 ELLVK 96
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 30.4 bits (67), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 55 GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTIL 109
G T L +I F + + L + + + NL+GETPL +A++ G IV +L
Sbjct: 101 GKTPLMWSIIF-GYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLL 154
Score = 26.6 bits (57), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Query: 102 PAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPL 161
P +V+ +L AI E+ + L D EG+T L AV+N + L+ K +
Sbjct: 38 PLMVACMLGMENAIDKLVENFDK--LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGS-NV 94
Query: 162 GYINKAEQTPLAIAIDSSLTDIACFIIDQRPDSLDHRLPEELTLL 206
+ + +TPL +I ++++ F+++ + D L E L+
Sbjct: 95 NTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLI 139
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 30.4 bits (67), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 129 ITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIACFII 188
+ + G TPL AV KH +V+ L++++ I + + +T L +A++ L IA +
Sbjct: 234 VRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLC 293
Query: 189 DQRPDSLD 196
+R S D
Sbjct: 294 -KRGASTD 300
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 131 DDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAI-AIDSSLTDIACFI 187
++ G TPLHNAV+ E++V +L++ P+ K TP + AI S+ + F+
Sbjct: 56 EEGGWTPLHNAVQMSREDIVELLLRHGADPV-LRKKNGATPFILAAIAGSVKLLKLFL 112
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 30.4 bits (67), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%)
Query: 129 ITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIAIDSSLTDIA 184
+ + G TPL AV KH +V+ L++++ I + + +T L +A++ L IA
Sbjct: 214 VRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIA 269
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 131 DDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTP-LAIAIDSSLTDIACFI 187
++ G TPLHNAV+ E++V +L++ P+ K TP L AI S+ + F+
Sbjct: 36 EEGGWTPLHNAVQMSREDIVELLLRHGADPV-LRKKNGATPFLLAAIAGSVKLLKLFL 92
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 30.0 bits (66), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 89 GETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPL 138
G TPLH+AAR G IV +L A N + ++ I+ D GN L
Sbjct: 35 GYTPLHLAAREGHLEIVEVLLK-AGADVNAQDKFGKTAFDISIDNGNEDL 83
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 18/106 (16%)
Query: 91 TPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVV 150
+P+H AAR G V++++ Y G S L TPL+ A N+ V
Sbjct: 159 SPIHEAARRGHVECVNSLIAY-----GGNIDHKISHL-------GTPLYLACENQQRACV 206
Query: 151 RMLVKKDRIPLGYIN--KAEQTPLAIAIDSSLTDIACFIIDQRPDS 194
+ L++ +N K + +PL + ++ ++AC ++D D+
Sbjct: 207 KKLLESG----ADVNQGKGQDSPLHAVVRTASEELACLLMDFGADT 248
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 18/106 (16%)
Query: 91 TPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVV 150
+P+H AAR G V++++ Y G S L TPL+ A N+ V
Sbjct: 103 SPIHEAARRGHVECVNSLIAY-----GGNIDHKISHL-------GTPLYLACENQQRACV 150
Query: 151 RMLVKKDRIPLGYIN--KAEQTPLAIAIDSSLTDIACFIIDQRPDS 194
+ L++ +N K + +PL ++ ++AC ++D D+
Sbjct: 151 KKLLESG----ADVNQGKGQDSPLHAVARTASEELACLLMDFGADT 192
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 45/117 (38%), Gaps = 22/117 (18%)
Query: 55 GNTVLHMAIRFRNHKVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPA 114
G T LH A+ V +LR + + L G TPL +AAR+ +V ++
Sbjct: 84 GRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLIT---- 139
Query: 115 ITNGTESEPESLLRITDDEGNTPLHNAVRNKHENVVRMLV----------KKDRIPL 161
++ + D+ G T LH A + V +L+ KD PL
Sbjct: 140 --------ADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPL 188
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 12/107 (11%)
Query: 69 KVIPEILRQQDSLLRKHNLKGETPLHIAARVGDPAIVSTILNYVPAITNGTESEPESLLR 128
+VI ++L Q L + GET LH+AAR +L+ G ++ +
Sbjct: 31 QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDA------GADANSQ---- 80
Query: 129 ITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGYINKAEQTPLAIA 175
D+ G TPLH AV V ++L++ L TPL +A
Sbjct: 81 --DNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILA 125
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 73/183 (39%), Gaps = 24/183 (13%)
Query: 25 LLNVLRRGDEHQIRPIAGRMQNIFSTMSPRGNTVLHMAIRFRNHKVIPEILRQQDSLLRK 84
LL+V R+ D + A + + +G T LH+AI RN ++ ++ +
Sbjct: 76 LLDVARKTDSLKQFVNASYTDSYY-----KGQTALHIAIERRNXTLVTLLVENGADVQAA 130
Query: 85 HN-------------LKGETPLHIAARVGDPAIVSTIL--NYVPAITNGTESEPESLLR- 128
N GE PL +AA AIV +L ++ PA + +S ++L
Sbjct: 131 ANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHA 190
Query: 129 ITDDEGNTPLHNAVRNKHENVVRMLVKKDRIPLGY---INKAEQTPLAIAIDSSLTDIAC 185
+ + NT + N + +L K L N+ TPLA+A S +
Sbjct: 191 LVEVADNTVDNTKFVTSXYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLA 250
Query: 186 FII 188
+I+
Sbjct: 251 YIL 253
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,432,260
Number of Sequences: 62578
Number of extensions: 256383
Number of successful extensions: 899
Number of sequences better than 100.0: 101
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 553
Number of HSP's gapped (non-prelim): 231
length of query: 215
length of database: 14,973,337
effective HSP length: 95
effective length of query: 120
effective length of database: 9,028,427
effective search space: 1083411240
effective search space used: 1083411240
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)