BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037246
(497 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
pdb|3VTA|B Chain B, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
Length = 621
Score = 260 bits (664), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 139/284 (48%), Positives = 192/284 (67%), Gaps = 5/284 (1%)
Query: 122 FASRNPQAYISKSEAANVSGAPGVPDFSSRGPNTIIPDIVKPDISAPGVEILAGFSPAVE 181
++ R+P A I KS + AP V FSSRGPN D++KPDIS PGVEILA + P+V
Sbjct: 339 YSIRSPGATIFKSTTILNASAPVVVSFSSRGPNRATKDVIKPDISGPGVEILAAW-PSVA 397
Query: 182 PSLLPGDKRSVKYSILSGTSVACSHVTGAAAYVKSFHPDWSPSSIKSALMTTAWSINATS 241
P + G +R+ ++I+SGTS++C H+TG A YVK+++P WSP++IKSALMTTA +NA
Sbjct: 398 P--VGGIRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMNARF 455
Query: 242 NPGGEFAFGAGHIDPVKAISPGLVYEAFADDYVKFLCSLGYDTRKLQAITKDSSTCPSET 301
NP EFA+G+GH++P+KA+ PGLVY+A DYVKFLC GY+T+ ++ IT D S C S
Sbjct: 456 NPQAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSACTSGN 515
Query: 302 KGTPKDLNYPSMAARVQENKPFAVNFSRTVTNVGQGNSKYKAKVTVDPKIKINVAPSDLS 361
G DLNYPS V ++ F F+RT+T+V S Y+A ++ + I+V P+ LS
Sbjct: 516 TGRVWDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLS 575
Query: 362 FKSLKEKQSFVVTVSGVGLKENSMVSASLVWSDGTYNVRSPIVL 405
F L +++SF +TV G + +VSASLVWSDG + VRSPI +
Sbjct: 576 FNGLGDRKSFTLTVRGS--IKGFVVSASLVWSDGVHYVRSPITI 617
Score = 101 bits (252), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 44/65 (67%), Positives = 49/65 (75%)
Query: 37 TTRSWDFMGFAETVKRNPSVESDIVIGVLDSGIWPELESFNDEGLSDPPKKWKGVCEGGK 96
TTRSWDF+GF TV R VES+IV+GVLD+GIWPE SF+DEG S PP KWKG CE
Sbjct: 1 TTRSWDFLGFPLTVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETSN 60
Query: 97 NFTCN 101
NF CN
Sbjct: 61 NFRCN 65
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 171 bits (432), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 119/297 (40%), Positives = 161/297 (54%), Gaps = 18/297 (6%)
Query: 124 SRNPQAYISKSEA-ANVSGAPGVPDFSSRGPNTIIPDIVKPDISAPGVEILAGFSPAV-E 181
S P A I+ E + AP V S+RGP+ I KPDI APGV ILA + P V
Sbjct: 347 SVTPTATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDILAPGVLILAAYPPNVFA 406
Query: 182 PSLLPGDKRSVKYSILSGTSVACSHVTGAAAYVKSFHPDWSPSSIKSALMTTAWSINATS 241
S+ S Y + SGTS+A H G AA +K+ HP+WSPS+I+SA+MTTA ++ T
Sbjct: 407 TSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTR 466
Query: 242 NP---------GGEFAFGAGHIDPVKAISPGLVYEAFADDYVKFLCSLGYDTRKLQAITK 292
P GAGH+DP +A+ PGLVY+A DYV LCSL + + + I +
Sbjct: 467 KPIKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIAR 526
Query: 293 DSSTCPSETKGTPKDLNYPSMAARVQENKPFAV---NFSRTVTNVGQGNSKYKAKVTVDP 349
S++ DLNYPS A F + F RTVTNVG+G + YKAK+
Sbjct: 527 SSAS--HNCSNPSADLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLKAPK 584
Query: 350 KIKINVAPSDLSFKSLKEKQSFVVTVSGVGLKENSMVSASLVW--SDGTYNVRSPIV 404
I+V+P L FK+ EKQS+ +T+ +G + S S+ W +G ++VRSPIV
Sbjct: 585 NSTISVSPQILVFKNKNEKQSYTLTIRYIGDEGQSRNVGSITWVEQNGNHSVRSPIV 641
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 44/76 (57%), Gaps = 17/76 (22%)
Query: 37 TTRSWDFMGFAETVKRNPS--------VESDIVIGVLDSGIWPELESFNDEGLSDPPKKW 88
TT + DF+ K NPS + D+++ VLDSGIWPE SF D+G+ + PK+W
Sbjct: 1 TTHTSDFL------KLNPSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRW 54
Query: 89 KGVCEGGKNFT---CN 101
KG+C+ G F CN
Sbjct: 55 KGICKPGTQFNASMCN 70
>pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
pdb|3AFG|B Chain B, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
Length = 539
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 72/142 (50%), Gaps = 17/142 (11%)
Query: 145 VPDFSSRGPNTIIPDIVKPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVAC 204
+ DFSSRGP + +KP++ APG I+A + G + Y+ GT++A
Sbjct: 309 ITDFSSRGPTA--DNRLKPEVVAPGNWIIAARASGTSM----GQPINDYYTAAPGTAMAT 362
Query: 205 SHVTGAAAYVKSFHPDWSPSSIKSALMTTAWSINATSNPGGEFAFGAGHIDPVKAISPGL 264
HV G AA + HP W+P +K+AL+ TA + + + A+GAG ++ KA
Sbjct: 363 PHVAGIAALLLQAHPSWTPDKVKTALIETADIVK--PDEIADIAYGAGRVNAYKA----- 415
Query: 265 VYEAFADDYVKFLCSLGYDTRK 286
A+ D+Y K L GY + K
Sbjct: 416 ---AYYDNYAK-LTFTGYVSNK 433
>pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam
Length = 266
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 54/108 (50%), Gaps = 27/108 (25%)
Query: 148 FSSRGPNTIIPDIVKPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHV 207
FSS GP D+ APGV I S LPG K Y LSGTS+A HV
Sbjct: 180 FSSVGPEL--------DVMAPGVSIC---------STLPGGK----YGALSGTSMASPHV 218
Query: 208 TGAAAYVKSFHPDWSPSSIKSALMTTAWSINATSNPGGEFAFGAGHID 255
GAAA + S HP+W+ + ++S+L TA + G F +G G I+
Sbjct: 219 AGAAALILSKHPNWTNTQVRSSLENTATKL------GDSFYYGKGLIN 260
>pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam
pdb|3BGO|S Chain S, Azide Complex Of Engineered Subtilisin Subt_bacam
pdb|3CO0|S Chain S, Substrate Complex Of Fluoride-Sensitive Engineered
Subtilisin Subt_bacam
Length = 266
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 54/108 (50%), Gaps = 27/108 (25%)
Query: 148 FSSRGPNTIIPDIVKPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHV 207
FSS GP D+ APGV I S LPG K Y LSGT++A HV
Sbjct: 180 FSSVGPEL--------DVMAPGVSIC---------STLPGGK----YGALSGTAMASPHV 218
Query: 208 TGAAAYVKSFHPDWSPSSIKSALMTTAWSINATSNPGGEFAFGAGHID 255
GAAA + S HP+W+ + ++S+L TA + G F +G G I+
Sbjct: 219 AGAAALILSKHPNWTNTQVRSSLENTATKL------GDSFYYGKGLIN 260
>pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d,
G169a, Q206c, N218s)
Length = 275
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 55/108 (50%), Gaps = 27/108 (25%)
Query: 148 FSSRGPNTIIPDIVKPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHV 207
FSS GP + D+ APGV I S LPG+K Y SGTS+A HV
Sbjct: 189 FSSVGP--------ELDVMAPGVSIX---------STLPGNK----YGAYSGTSMASPHV 227
Query: 208 TGAAAYVKSFHPDWSPSSIKSALMTTAWSINATSNPGGEFAFGAGHID 255
GAAA + S HP+W+ + ++S+L N T+ G F +G G I+
Sbjct: 228 AGAAALILSKHPNWTNTQVRSSLE------NTTTKLGDSFYYGKGLIN 269
>pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal
Growth Mutant
Length = 266
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 55/108 (50%), Gaps = 27/108 (25%)
Query: 148 FSSRGPNTIIPDIVKPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHV 207
FSS GP + D+ APGV I S LPG+K Y SGTS+A HV
Sbjct: 180 FSSVGP--------ELDVMAPGVSIC---------STLPGNK----YGAKSGTSMASPHV 218
Query: 208 TGAAAYVKSFHPDWSPSSIKSALMTTAWSINATSNPGGEFAFGAGHID 255
GAAA + S HP+W+ + ++S+L N T+ G F +G G I+
Sbjct: 219 AGAAALILSKHPNWTNTQVRSSLE------NTTTKLGNSFYYGKGLIN 260
>pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
Length = 275
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 55/108 (50%), Gaps = 27/108 (25%)
Query: 148 FSSRGPNTIIPDIVKPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHV 207
FSS GP + D+ APGV I S LPG+K Y +GTS+A HV
Sbjct: 189 FSSVGP--------ELDVMAPGVSI---------QSTLPGNK----YGAYNGTSMASPHV 227
Query: 208 TGAAAYVKSFHPDWSPSSIKSALMTTAWSINATSNPGGEFAFGAGHID 255
GAAA + S HP+W+ + ++S+L N T+ G F +G G I+
Sbjct: 228 AGAAALILSKHPNWTNTQVRSSLQ------NTTTKLGDSFYYGKGLIN 269
>pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of
Subtilisin Bpn And Subtilisin Novo
pdb|1SBT|A Chain A, Atomic Coordinates For Subtilisin Bpn (Or Novo)
Length = 275
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 55/108 (50%), Gaps = 27/108 (25%)
Query: 148 FSSRGPNTIIPDIVKPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHV 207
FSS GP + D+ APGV I S LPG+K Y +GTS+A HV
Sbjct: 189 FSSVGP--------ELDVMAPGVSI---------QSTLPGNK----YGAYNGTSMASPHV 227
Query: 208 TGAAAYVKSFHPDWSPSSIKSALMTTAWSINATSNPGGEFAFGAGHID 255
GAAA + S HP+W+ + ++S+L N T+ G F +G G I+
Sbjct: 228 AGAAALILSKHPNWTNTQVRSSLQ------NTTTKLGDSFYYGKGLIN 269
>pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 35%
Dimethylformamide
pdb|1YJA|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 20%
Dimethylformamide
pdb|1SBH|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) Mutant (M50f,
N76d, G169a, Q206c, N218s, K256y)
pdb|1YJC|A Chain A, Subtilisin Bpn' 8397+1 (e.c. 3.4.21.14) (mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (m50f,
N76d, G169a, Q206c, N218s, And K256y) In 50%
Dimethylformamide
Length = 275
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 55/108 (50%), Gaps = 27/108 (25%)
Query: 148 FSSRGPNTIIPDIVKPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHV 207
FSS GP + D+ APGV I S LPG+K Y SGTS+A HV
Sbjct: 189 FSSVGP--------ELDVMAPGVSIX---------STLPGNK----YGAYSGTSMASPHV 227
Query: 208 TGAAAYVKSFHPDWSPSSIKSALMTTAWSINATSNPGGEFAFGAGHID 255
GAAA + S HP+W+ + ++S+L N T+ G F +G G I+
Sbjct: 228 AGAAALILSKHPNWTNTQVRSSLE------NTTTYLGDSFYYGKGLIN 269
>pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A
Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6.
Crystallization Temperature 20 C Diffraction
Temperature- 160 C
Length = 266
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 56/108 (51%), Gaps = 27/108 (25%)
Query: 148 FSSRGPNTIIPDIVKPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHV 207
FSS GP + D+ APGV I+ S LPG+K Y SGT++A HV
Sbjct: 180 FSSVGP--------ELDVMAPGVSIV---------STLPGNK----YGAKSGTAMASPHV 218
Query: 208 TGAAAYVKSFHPDWSPSSIKSALMTTAWSINATSNPGGEFAFGAGHID 255
GAAA + S HP+W+ + ++S+L N T+ G F +G G I+
Sbjct: 219 AGAAALILSKHPNWTNTQVRSSLE------NTTTKLGDSFYYGKGLIN 260
>pdb|1AQN|A Chain A, Subtilisin Mutant 8324
pdb|1AU9|A Chain A, Subtilisin Bpn' Mutant 8324 In Citrate
Length = 275
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 55/108 (50%), Gaps = 27/108 (25%)
Query: 148 FSSRGPNTIIPDIVKPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHV 207
FSS GP + D+ APGV I S LPG+K Y SGTS+A HV
Sbjct: 189 FSSVGP--------ELDVMAPGVSIC---------STLPGNK----YGAKSGTSMASPHV 227
Query: 208 TGAAAYVKSFHPDWSPSSIKSALMTTAWSINATSNPGGEFAFGAGHID 255
GAAA + S HP+W+ + ++S+L N T+ G F +G G I+
Sbjct: 228 AGAAALILSKHPNWTNTQVRSSLE------NTTTKLGDSFYYGKGLIN 269
>pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin
Bpn(Prime) Through Incremental Changes In The Free
Energy Of Unfolding
Length = 275
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 55/108 (50%), Gaps = 27/108 (25%)
Query: 148 FSSRGPNTIIPDIVKPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHV 207
FSS GP + D+ APGV I S LPG+K Y SGTS+A HV
Sbjct: 189 FSSVGP--------ELDVMAPGVSIC---------STLPGNK----YGAKSGTSMASPHV 227
Query: 208 TGAAAYVKSFHPDWSPSSIKSALMTTAWSINATSNPGGEFAFGAGHID 255
GAAA + S HP+W+ + ++S+L N T+ G F +G G I+
Sbjct: 228 AGAAALILSKHPNWTNTQVRSSLE------NTTTKLGDSFYYGKGLIN 269
>pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant
Length = 266
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 55/108 (50%), Gaps = 27/108 (25%)
Query: 148 FSSRGPNTIIPDIVKPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHV 207
FSS GP + D+ APGV I S LPG+K Y SGTS+A HV
Sbjct: 180 FSSVGP--------ELDVMAPGVSIC---------STLPGNK----YGAKSGTSMASPHV 218
Query: 208 TGAAAYVKSFHPDWSPSSIKSALMTTAWSINATSNPGGEFAFGAGHID 255
GAAA + S HP+W+ + ++S+L N T+ G F +G G I+
Sbjct: 219 AGAAALILSKHPNWTNTQVRSSLE------NTTTKLGDSFYYGKGLIN 260
>pdb|1SUA|A Chain A, Subtilisin Bpn'
Length = 266
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 56/108 (51%), Gaps = 27/108 (25%)
Query: 148 FSSRGPNTIIPDIVKPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHV 207
FSS GP + D+ APGV I+ S LPG+K Y SGT++A HV
Sbjct: 180 FSSVGP--------ELDVMAPGVSIV---------STLPGNK----YGAKSGTAMASPHV 218
Query: 208 TGAAAYVKSFHPDWSPSSIKSALMTTAWSINATSNPGGEFAFGAGHID 255
GAAA + S HP+W+ + ++S+L N T+ G F +G G I+
Sbjct: 219 AGAAALILSKHPNWTNTQVRSSLE------NTTTKLGDSFYYGKGLIN 260
>pdb|1AK9|A Chain A, Subtilisin Mutant 8321
Length = 275
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 55/108 (50%), Gaps = 27/108 (25%)
Query: 148 FSSRGPNTIIPDIVKPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHV 207
FSS GP + D+ APGV I S LPG+K Y SGTS+A HV
Sbjct: 189 FSSVGP--------ELDVMAPGVSI---------QSTLPGNK----YGAKSGTSMASPHV 227
Query: 208 TGAAAYVKSFHPDWSPSSIKSALMTTAWSINATSNPGGEFAFGAGHID 255
GAAA + S HP+W+ + ++S+L N T+ G F +G G I+
Sbjct: 228 AGAAALILSKHPNWTNTQVRSSLE------NTTTKLGDSFYYGKGLIN 269
>pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin
Bpn' And Streptomyces Subtilisin Inhibitor At 1.8
Angstroms Resolution
pdb|1SIB|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|1SBN|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|3SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|5SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|1SUP|A Chain A, Subtilisin Bpn' At 1.6 Angstroms Resolution: Analysis Of
Discrete Disorder And Comparison Of Crystal Forms
pdb|2ST1|A Chain A, The Three-dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 55/108 (50%), Gaps = 27/108 (25%)
Query: 148 FSSRGPNTIIPDIVKPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHV 207
FSS GP + D+ APGV I S LPG+K Y +GTS+A HV
Sbjct: 189 FSSVGP--------ELDVMAPGVSI---------QSTLPGNK----YGAYNGTSMASPHV 227
Query: 208 TGAAAYVKSFHPDWSPSSIKSALMTTAWSINATSNPGGEFAFGAGHID 255
GAAA + S HP+W+ + ++S+L N T+ G F +G G I+
Sbjct: 228 AGAAALILSKHPNWTNTQVRSSLE------NTTTKLGDSFYYGKGLIN 269
>pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution
pdb|1TM1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2
pdb|1TM3|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k Mutant
pdb|1TM4|E Chain E, Crystal Structure Of The Complex Of Subtilsin Bpn'with
Chymotrypsin Inhibitor 2 M59g Mutant
pdb|1TM5|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59a Mutant
pdb|1TM7|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59y Mutant
pdb|1TMG|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59f Mutant
pdb|1TO1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 Y61a Mutant
pdb|1TO2|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k, In Ph 9 Cryosoak
pdb|1Y1K|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58a Mutant
pdb|1Y33|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58p Mutant
pdb|1Y34|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60a Mutant
pdb|1Y3B|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60s Mutant
pdb|1Y3C|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R62a Mutant
pdb|1Y3D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R67a Mutant
pdb|1Y3F|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 F69a Mutant
pdb|1Y48|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R65a Mutant
pdb|1Y4A|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59r/e60s Mutant
pdb|1Y4D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59rE60S MUTANT
Length = 281
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 55/108 (50%), Gaps = 27/108 (25%)
Query: 148 FSSRGPNTIIPDIVKPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHV 207
FSS GP + D+ APGV I S LPG+K Y +GTS+A HV
Sbjct: 189 FSSVGP--------ELDVMAPGVSI---------QSTLPGNK----YGAYNGTSMASPHV 227
Query: 208 TGAAAYVKSFHPDWSPSSIKSALMTTAWSINATSNPGGEFAFGAGHID 255
GAAA + S HP+W+ + ++S+L N T+ G F +G G I+
Sbjct: 228 AGAAALILSKHPNWTNTQVRSSLE------NTTTKLGDSFYYGKGLIN 269
>pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of
Subtilisin Bpn'
Length = 275
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 55/108 (50%), Gaps = 27/108 (25%)
Query: 148 FSSRGPNTIIPDIVKPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHV 207
FSS GP + D+ APGV I S LPG+K Y +GTS+A HV
Sbjct: 189 FSSVGP--------ELDVMAPGVSI---------QSTLPGNK----YGAYNGTSMASPHV 227
Query: 208 TGAAAYVKSFHPDWSPSSIKSALMTTAWSINATSNPGGEFAFGAGHID 255
GAAA + S HP+W+ + ++S+L N T+ G F +G G I+
Sbjct: 228 AGAAALILSKHPNWTNTQVRSSLE------NTTTKLGDSFYYGKGLIN 269
>pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 54/108 (50%), Gaps = 27/108 (25%)
Query: 148 FSSRGPNTIIPDIVKPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHV 207
FSS GP + D+ APGV I S LPG+K Y SGT +A HV
Sbjct: 189 FSSVGP--------ELDVMAPGVSI---------QSTLPGNK----YGAYSGTXMASPHV 227
Query: 208 TGAAAYVKSFHPDWSPSSIKSALMTTAWSINATSNPGGEFAFGAGHID 255
GAAA + S HP+W+ + ++S+L N T+ G F +G G I+
Sbjct: 228 AGAAALILSKHPNWTNTQVRSSLE------NTTTKLGDSFYYGKGLIN 269
>pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186
Length = 275
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 54/108 (50%), Gaps = 27/108 (25%)
Query: 148 FSSRGPNTIIPDIVKPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHV 207
FSS GP + D+ APGV I S LPG+K Y SGT +A HV
Sbjct: 189 FSSVGP--------ELDVMAPGVSI---------QSTLPGNK----YGAYSGTXMASPHV 227
Query: 208 TGAAAYVKSFHPDWSPSSIKSALMTTAWSINATSNPGGEFAFGAGHID 255
GAAA + S HP+W+ + ++S+L N T+ G F +G G I+
Sbjct: 228 AGAAALILSKHPNWTNTQVRSSLE------NTTTKLGDSFYYGKGLIN 269
>pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design
pdb|1SUD|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 54/108 (50%), Gaps = 27/108 (25%)
Query: 148 FSSRGPNTIIPDIVKPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHV 207
FSS GP + D+ APGV I S LPG+K Y SGT +A HV
Sbjct: 189 FSSVGP--------ELDVMAPGVSI---------QSTLPGNK----YGAKSGTXMASPHV 227
Query: 208 TGAAAYVKSFHPDWSPSSIKSALMTTAWSINATSNPGGEFAFGAGHID 255
GAAA + S HP+W+ + ++S+L N T+ G F +G G I+
Sbjct: 228 AGAAALILSKHPNWTNTQVRSSLE------NTTTKLGDSFYYGKGLIN 269
>pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 54/108 (50%), Gaps = 27/108 (25%)
Query: 148 FSSRGPNTIIPDIVKPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHV 207
FSS GP + D+ APGV I S LPG+K Y +GTS A HV
Sbjct: 189 FSSVGP--------ELDVMAPGVSI---------QSTLPGNK----YGAYNGTSXASPHV 227
Query: 208 TGAAAYVKSFHPDWSPSSIKSALMTTAWSINATSNPGGEFAFGAGHID 255
GAAA + S HP+W+ + ++S+L N T+ G F +G G I+
Sbjct: 228 AGAAALILSKHPNWTNTQVRSSLE------NTTTKLGDSFYYGKGLIN 269
>pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant
Length = 266
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 54/108 (50%), Gaps = 27/108 (25%)
Query: 148 FSSRGPNTIIPDIVKPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHV 207
FSS GP + D+ APGV I S LPG+K Y SGT +A HV
Sbjct: 180 FSSVGP--------ELDVMAPGVSIC---------STLPGNK----YGAKSGTXMASPHV 218
Query: 208 TGAAAYVKSFHPDWSPSSIKSALMTTAWSINATSNPGGEFAFGAGHID 255
GAAA + S HP+W+ + ++S+L N T+ G F +G G I+
Sbjct: 219 AGAAALILSKHPNWTNTQVRSSLE------NTTTKLGDSFYYGKGLIN 260
>pdb|1GNS|A Chain A, Subtilisin Bpn'
Length = 263
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 53/108 (49%), Gaps = 27/108 (25%)
Query: 148 FSSRGPNTIIPDIVKPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHV 207
FSS GP D+ APGV I S LPG+K Y SGT +A HV
Sbjct: 177 FSSVGPEL--------DVMAPGVSIW---------STLPGNK----YGAKSGTXMASPHV 215
Query: 208 TGAAAYVKSFHPDWSPSSIKSALMTTAWSINATSNPGGEFAFGAGHID 255
GAAA + S HP+W+ + ++S+L N T+ G F +G G I+
Sbjct: 216 AGAAALILSKHPNWTNTQVRSSLE------NTTTKLGDSFYYGKGLIN 257
>pdb|1UBN|A Chain A, Selenosubtilisin Bpn
Length = 275
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 54/108 (50%), Gaps = 27/108 (25%)
Query: 148 FSSRGPNTIIPDIVKPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHV 207
FSS GP + D+ APGV I S LPG+K Y +GT +A HV
Sbjct: 189 FSSVGP--------ELDVMAPGVSI---------QSTLPGNK----YGAYNGTXMASPHV 227
Query: 208 TGAAAYVKSFHPDWSPSSIKSALMTTAWSINATSNPGGEFAFGAGHID 255
GAAA + S HP+W+ + ++S+L N T+ G F +G G I+
Sbjct: 228 AGAAALILSKHPNWTNTQVRSSLE------NTTTKLGDSFYYGKGLIN 269
>pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In
Complex With Subtilisin Bpn'
Length = 275
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 54/108 (50%), Gaps = 27/108 (25%)
Query: 148 FSSRGPNTIIPDIVKPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHV 207
FSS GP + D+ APGV I S LPG+K Y +GT +A HV
Sbjct: 189 FSSVGP--------ELDVMAPGVSI---------QSTLPGNK----YGAYNGTXMASPHV 227
Query: 208 TGAAAYVKSFHPDWSPSSIKSALMTTAWSINATSNPGGEFAFGAGHID 255
GAAA + S HP+W+ + ++S+L N T+ G F +G G I+
Sbjct: 228 AGAAALILSKHPNWTNTQVRSSLE------NTTTKLGDSFYYGKGLIN 269
>pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant
Length = 269
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 42/78 (53%), Gaps = 13/78 (16%)
Query: 164 DISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHVTGAAAYVKSFHPDWSP 223
DI APGV + S PG Y+ L+GTS+A HV GAAA VK +P WS
Sbjct: 191 DIVAPGVNV---------QSTYPGST----YASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 224 SSIKSALMTTAWSINATS 241
I++ L TA S+ +T+
Sbjct: 238 VQIRNHLKNTATSLGSTN 255
>pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18
Structures
Length = 269
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 42/78 (53%), Gaps = 13/78 (16%)
Query: 164 DISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHVTGAAAYVKSFHPDWSP 223
DI APGV + S PG Y+ L+GTS+A HV GAAA VK +P WS
Sbjct: 191 DIVAPGVNV---------QSTYPGST----YASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 224 SSIKSALMTTAWSINATS 241
I++ L TA S+ +T+
Sbjct: 238 VQIRNHLKNTATSLGSTN 255
>pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N
Length = 269
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 42/78 (53%), Gaps = 13/78 (16%)
Query: 164 DISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHVTGAAAYVKSFHPDWSP 223
DI APGV + S PG Y+ L+GTS+A HV GAAA VK +P WS
Sbjct: 191 DIVAPGVNV---------QSTYPGST----YASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 224 SSIKSALMTTAWSINATS 241
I++ L TA S+ +T+
Sbjct: 238 VQIRNHLKNTATSLGSTN 255
>pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin
pdb|1TK2|A Chain A, Crystal Structure Of The Complex Formed Between Alkaline
Proteinase Savinase And Gramicidin S At 1.5a Resolution
pdb|1JEA|A Chain A, Altered Topology And Flexibility In Engineered Subtilisin
pdb|1SVN|A Chain A, Savinase
pdb|3BX1|A Chain A, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|3BX1|B Chain B, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|1GCI|A Chain A, The 0.78 Angstroms Structure Of A Serine Protease-Bacillus
Lentus Subtilisin
Length = 269
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 42/78 (53%), Gaps = 13/78 (16%)
Query: 164 DISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHVTGAAAYVKSFHPDWSP 223
DI APGV + S PG Y+ L+GTS+A HV GAAA VK +P WS
Sbjct: 191 DIVAPGVNV---------QSTYPGST----YASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 224 SSIKSALMTTAWSINATS 241
I++ L TA S+ +T+
Sbjct: 238 VQIRNHLKNTATSLGSTN 255
>pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline
Protease, Subtilisin Bl, At 1.4 Angstroms Resolution
Length = 269
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 41/77 (53%), Gaps = 13/77 (16%)
Query: 164 DISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHVTGAAAYVKSFHPDWSP 223
DI APGV + S PG Y+ L+GTS+A HV GAAA VK +P WS
Sbjct: 191 DIVAPGVNV---------QSTYPGST----YASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 224 SSIKSALMTTAWSINAT 240
I++ L TA S+ +T
Sbjct: 238 VQIRNHLKNTATSLGST 254
>pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1V6C|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1WVM|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1WVM|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1Y9Z|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
pdb|1Y9Z|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
Length = 441
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 68/140 (48%), Gaps = 18/140 (12%)
Query: 131 ISKSEAANVSGAPGVPDFSSRGPNTIIPDIVKP-------DISAPGVEILAGFSPAVEPS 183
I+ ++A +GA G+ +S N+ +P + P DI+ P V + A++
Sbjct: 292 INSTKACKTAGAKGIIVYS----NSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAK 347
Query: 184 L----LPGDKRSVKYSILSGTSVACSHVTGAAAYVKSFHPDWSPSSIKSALMTTAWSINA 239
L ++ + Y +GTS+A HV+G A V S+HP+ S S +++AL TA +
Sbjct: 348 LGQSTTVSNQGNQDYEYYNGTSMATPHVSGVATLVWSYHPECSASQVRAALNATADDL-- 405
Query: 240 TSNPGGEFAFGAGHIDPVKA 259
S G + G G I+ V A
Sbjct: 406 -SVAGRDNQTGYGMINAVAA 424
>pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic
Bacterium And The Leech Inhibitor Eglin-C
Length = 275
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 45/92 (48%), Gaps = 19/92 (20%)
Query: 164 DISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHVTGAAAYVKSFHPDWSP 223
D+ APGV I S LPG Y +GTS+A HV GAAA + S HP W+
Sbjct: 197 DVMAPGVSI---------QSTLPGGT----YGAYNGTSMATPHVAGAAALILSKHPTWTN 243
Query: 224 SSIKSALMTTAWSINATSNPGGEFAFGAGHID 255
+ ++ L +TA + G F +G G I+
Sbjct: 244 AQVRDRLESTATYL------GSSFYYGKGLIN 269
>pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87)
K27rV104YN123ST274A
Length = 269
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 41/78 (52%), Gaps = 13/78 (16%)
Query: 164 DISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHVTGAAAYVKSFHPDWSP 223
DI APGV + S PG Y+ L+GT +A HV GAAA VK +P WS
Sbjct: 191 DIVAPGVNV---------QSTYPGST----YASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 224 SSIKSALMTTAWSINATS 241
I++ L TA S+ +T+
Sbjct: 238 VQIRNHLKNTATSLGSTN 255
>pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus
Lentus
Length = 269
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 41/78 (52%), Gaps = 13/78 (16%)
Query: 164 DISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHVTGAAAYVKSFHPDWSP 223
DI APGV + S PG Y+ L+GT +A HV GAAA VK +P WS
Sbjct: 191 DIVAPGVNV---------QSTYPGST----YASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 224 SSIKSALMTTAWSINATS 241
I++ L TA S+ +T+
Sbjct: 238 VQIRNHLKNTATSLGSTN 255
>pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin
Length = 269
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 41/78 (52%), Gaps = 13/78 (16%)
Query: 164 DISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHVTGAAAYVKSFHPDWSP 223
DI APGV + S PG Y+ L+GT +A HV GAAA VK +P WS
Sbjct: 191 DIVAPGVNV---------QSTYPGST----YASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 224 SSIKSALMTTAWSINATS 241
I++ L TA S+ +T+
Sbjct: 238 VQIRNHLKNTATSLGSTN 255
>pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I
Length = 269
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 40/77 (51%), Gaps = 13/77 (16%)
Query: 164 DISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHVTGAAAYVKSFHPDWSP 223
DI APGV + S PG Y+ L+GT +A HV GAAA VK +P WS
Sbjct: 191 DIVAPGVNV---------QSTYPGST----YASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 224 SSIKSALMTTAWSINAT 240
I++ L TA S+ +T
Sbjct: 238 VQIRNHLKNTATSLGST 254
>pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis
Natto
Length = 275
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 44/92 (47%), Gaps = 19/92 (20%)
Query: 164 DISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHVTGAAAYVKSFHPDWSP 223
D+ APGV I S LPG Y +GT +A HV GAAA + S HP W+
Sbjct: 197 DVMAPGVSI---------QSTLPGGT----YGAYNGTXMATPHVAGAAALILSKHPTWTN 243
Query: 224 SSIKSALMTTAWSINATSNPGGEFAFGAGHID 255
+ ++ L +TA + G F +G G I+
Sbjct: 244 AQVRDRLESTATYL------GNSFYYGKGLIN 269
>pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex
Length = 275
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 44/92 (47%), Gaps = 19/92 (20%)
Query: 164 DISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHVTGAAAYVKSFHPDWSP 223
D+ APGV I S LPG Y +GT +A HV GAAA + S HP W+
Sbjct: 197 DVMAPGVSI---------QSTLPGGT----YGAYNGTCMATPHVAGAAALILSKHPTWTN 243
Query: 224 SSIKSALMTTAWSINATSNPGGEFAFGAGHID 255
+ ++ L +TA + G F +G G I+
Sbjct: 244 AQVRDRLESTATYL------GNSFYYGKGLIN 269
>pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|B Chain B, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|C Chain C, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|4HX2|A Chain A, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
pdb|4HX2|C Chain C, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
Length = 274
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 6/62 (9%)
Query: 194 YSILSGTSVACSHVTGAAAYVKSFHPDWSPSSIKSALMTTAWSINATSNPGGEFAFGAGH 253
Y+ L+GTS+A HV GAAA + S HP+ S S +++ L +TA + G F +G G
Sbjct: 213 YATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYL------GSSFYYGKGL 266
Query: 254 ID 255
I+
Sbjct: 267 IN 268
>pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex
Formed Between Subtilisin Carlsberg And Eglin C, An
Elastase Inhibitor From The Leech Hirudo Medicinalis.
Structural Analysis, Subtilisin Structure And Interface
Geometry
pdb|2SEC|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
pdb|1OYV|A Chain A, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1OYV|B Chain B, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1R0R|E Chain E, 1.1 Angstrom Resolution Structure Of The Complex Between
The Protein Inhibitor, Omtky3, And The Serine Protease,
Subtilisin Carlsberg
pdb|1AF4|A Chain A, Crystal Structure Of Subtilisin Carlsberg In Anhydrous
Dioxane
pdb|1BE6|A Chain A, Trans-Cinnamoyl-Subtilisin In Anhydrous Acetonitrile
pdb|1BE8|A Chain A, Trans-Cinnamoyl-Subtilisin In Water
pdb|1BFK|A Chain A, Crystal Structure Of Subtilisin Carlsberg In 40%
Acetonitrile
pdb|1BFU|A Chain A, Subtilisin Carlsberg In 20% Dioxane
pdb|1SBC|A Chain A, The Refined Crystal Structure Of Subtilisin Carlsberg At
2.5 Angstroms Resolution
pdb|1SCA|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCB|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCD|A Chain A, X-Ray Crystal Structure Of Cross-Linked Subtilism
Carlsberg In Water Vs. Acetonitrile
pdb|2WUV|A Chain A, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile
pdb|2WUW|E Chain E, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile (Native
Data)
Length = 274
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 6/62 (9%)
Query: 194 YSILSGTSVACSHVTGAAAYVKSFHPDWSPSSIKSALMTTAWSINATSNPGGEFAFGAGH 253
Y+ L+GTS+A HV GAAA + S HP+ S S +++ L +TA + G F +G G
Sbjct: 213 YATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYL------GSSFYYGKGL 266
Query: 254 ID 255
I+
Sbjct: 267 IN 268
>pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By
N-(Tert-Butoxycarbonyl-Alanyl-
Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation
Of Covalent Enzyme-Inhibitor Linkage In The Form Of A
Carbamate Derivative
Length = 276
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 6/62 (9%)
Query: 194 YSILSGTSVACSHVTGAAAYVKSFHPDWSPSSIKSALMTTAWSINATSNPGGEFAFGAGH 253
Y+ L+GTS+A HV GAAA + S HP+ S S +++ L +TA + G F +G G
Sbjct: 213 YATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYL------GSSFYYGKGL 266
Query: 254 ID 255
I+
Sbjct: 267 IN 268
>pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
pdb|1YU6|B Chain B, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
Length = 275
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 6/62 (9%)
Query: 194 YSILSGTSVACSHVTGAAAYVKSFHPDWSPSSIKSALMTTAWSINATSNPGGEFAFGAGH 253
Y+ L+GTS+A HV GAAA + S HP+ S S +++ L +TA + G F +G G
Sbjct: 214 YATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYL------GSSFYYGKGL 267
Query: 254 ID 255
I+
Sbjct: 268 IN 269
>pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin
Length = 275
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 6/62 (9%)
Query: 194 YSILSGTSVACSHVTGAAAYVKSFHPDWSPSSIKSALMTTAWSINATSNPGGEFAFGAGH 253
Y+ L+GTS+A HV GAAA + S HP+ S S +++ L +TA + G F +G G
Sbjct: 214 YATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYL------GSSFYYGKGL 267
Query: 254 ID 255
I+
Sbjct: 268 IN 269
>pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar)
pdb|3UNX|A Chain A, Bond Length Analysis Of Asp, Glu And His Residues In
Subtilisin Carlsberg At 1.26a Resolution
Length = 274
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 6/62 (9%)
Query: 194 YSILSGTSVACSHVTGAAAYVKSFHPDWSPSSIKSALMTTAWSINATSNPGGEFAFGAGH 253
Y+ L+GTS+A HV GAAA + S HP+ S S +++ L +TA + G F +G G
Sbjct: 213 YATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYL------GSSFYYGKGL 266
Query: 254 ID 255
I+
Sbjct: 267 IN 268
>pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture
pdb|1MPT|A Chain A, Crystal Structure Of A New Alkaline Serine Protease
(M-Protease) From Bacillus Sp. Ksm-K16
Length = 269
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 39/78 (50%), Gaps = 13/78 (16%)
Query: 164 DISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHVTGAAAYVKSFHPDWSP 223
DI APGV + S PG Y+ L+GTS+A HV G AA VK +P WS
Sbjct: 191 DIVAPGVNV---------QSTYPGST----YASLNGTSMATPHVAGVAALVKQKNPSWSN 237
Query: 224 SSIKSALMTTAWSINATS 241
I++ L TA + T+
Sbjct: 238 VQIRNHLKNTATGLGNTN 255
>pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1SEL|B Chain B, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1AV7|A Chain A, Subtilisin Carlsberg L-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1AVT|A Chain A, Subtilisin Carlsberg D-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|1VSB|A Chain A, Subtilisin Carlsberg L-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|3VSB|A Chain A, Subtilisin Carlsberg D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
Length = 274
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 194 YSILSGTSVACSHVTGAAAYVKSFHPDWSPSSIKSALMTTAWSINATSNPGGEFAFGAGH 253
Y+ L+GT +A HV GAAA + S HP+ S S +++ L +TA + G F +G G
Sbjct: 213 YATLNGTXMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYL------GSSFYYGKGL 266
Query: 254 ID 255
I+
Sbjct: 267 IN 268
>pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N-
Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone
Length = 274
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 6/62 (9%)
Query: 194 YSILSGTSVACSHVTGAAAYVKSFHPDWSPSSIKSALMTTAWSINATSNPGGEFAFGAGH 253
Y+ L+GTS+A HV GAAA + S +P S S +++ L +TA +N G F +G G
Sbjct: 213 YTSLNGTSMASPHVAGAAALILSKYPTLSASQVRNRLSSTA------TNLGDSFYYGKGL 266
Query: 254 ID 255
I+
Sbjct: 267 IN 268
>pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 18/107 (16%)
Query: 161 VKPDISAPGVEILAGFSPAVEPSLLPGDKRSVK--YSILSGTSVACSHVTGAAAYV---- 214
V D++APG +IL+ ++ G +R V YS ++GTS+A HV+G AA V
Sbjct: 242 VDVDLAAPGQDILS--------TVDSGTRRPVSDAYSFMAGTSMATPHVSGVAALVISAA 293
Query: 215 KSFHPDWSPSSIKSALMTTAWSINATSNPGGEFAFGAGHIDPVKAIS 261
S + + +P+ +K L++T N + A G+G +D A++
Sbjct: 294 NSVNKNLTPAELKDVLVSTTSPFNGRL----DRALGSGIVDAEAAVN 336
>pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 339
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 18/107 (16%)
Query: 161 VKPDISAPGVEILAGFSPAVEPSLLPGDKRSVK--YSILSGTSVACSHVTGAAAYV---- 214
V D++APG +IL+ ++ G +R V YS ++GTS+A HV+G AA V
Sbjct: 242 VDVDLAAPGQDILS--------TVDSGTRRPVSDAYSFMAGTSMATPHVSGVAALVISAA 293
Query: 215 KSFHPDWSPSSIKSALMTTAWSINATSNPGGEFAFGAGHIDPVKAIS 261
S + + +P+ +K L++T N + A G+G +D A++
Sbjct: 294 NSVNKNLTPAELKDVLVSTTSPFNGRL----DRALGSGIVDAEAAVN 336
>pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 56/107 (52%), Gaps = 18/107 (16%)
Query: 161 VKPDISAPGVEILAGFSPAVEPSLLPGDKRSVK--YSILSGTSVACSHVTGAAAYV---- 214
V D++APG +IL+ ++ G +R V YS ++GTS+A HV+G AA V
Sbjct: 242 VDVDLAAPGQDILS--------TVDSGTRRPVSDAYSFMAGTSMATPHVSGVAALVISAA 293
Query: 215 KSFHPDWSPSSIKSALMTTAWSINATSNPGGEFAFGAGHIDPVKAIS 261
S + + +P+ +K L++T N + A G+G +D A++
Sbjct: 294 NSVNKNLTPAELKDVLVSTTSPFNGRL----DRALGSGIVDAEAAVN 336
>pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K)
pdb|1WME|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (1.50 Angstrom, 293 K)
Length = 434
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 48/98 (48%), Gaps = 8/98 (8%)
Query: 145 VPDFSSRGPNTIIPDIVKPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVAC 204
V FSSRGP +KPD+ APG IL+ S S + S KY+ + GTS+A
Sbjct: 202 VAQFSSRGPTK--DGRIKPDVMAPGTFILSARSSLAPDSSFWANHDS-KYAYMGGTSMAT 258
Query: 205 SHVTGAAA-----YVKSFHPDWSPSSIKSALMTTAWSI 237
V G A +VK+ PS +K+AL+ A I
Sbjct: 259 PIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADI 296
>pdb|1WMF|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (oxidized Form, 1.73 Angstrom)
Length = 434
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 46/98 (46%), Gaps = 8/98 (8%)
Query: 145 VPDFSSRGPNTIIPDIVKPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVAC 204
V FSSRGP +KPD+ APG IL+ S S + S KY+ GTS A
Sbjct: 202 VAQFSSRGPTK--DGRIKPDVMAPGTFILSARSSLAPDSSFWANHDS-KYAYXGGTSXAT 258
Query: 205 SHVTGAAA-----YVKSFHPDWSPSSIKSALMTTAWSI 237
V G A +VK+ PS +K+AL+ A I
Sbjct: 259 PIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADI 296
>pdb|2IXT|A Chain A, Sphericase
pdb|2IXT|B Chain B, Sphericase
pdb|3D43|A Chain A, The Crystal Structure Of Sph At 0.8a
pdb|3D43|B Chain B, The Crystal Structure Of Sph At 0.8a
Length = 310
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 17/98 (17%)
Query: 145 VPDFSSRGPNTIIPDIV----KPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGT 200
V D+SSRG + D V +ISAPG + + + Y+ +SGT
Sbjct: 203 VADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTWYNG-------------GYNTISGT 249
Query: 201 SVACSHVTGAAAYVKSFHPDWSPSSIKSALMTTAWSIN 238
S+A HV+G AA + + +P S + ++S L A S++
Sbjct: 250 SMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVD 287
>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The
C5a Peptidase From Streptococcus Pyogenes (Scpa)
Length = 936
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 29/112 (25%)
Query: 161 VKPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHVTGAAAYVK----S 216
+KPDI+APG +IL+ + + KY+ LSGTS++ V G ++ +
Sbjct: 389 IKPDIAAPGQDILSSVA-------------NNKYAKLSGTSMSAPLVAGIMGLLQKQYET 435
Query: 217 FHPDWSPSS----IKSALMTTAWSI-----NATSNPGGEFAFGAGHIDPVKA 259
+PD +PS K LM++A ++ A +P + GAG +D KA
Sbjct: 436 QYPDMTPSERLDLAKKVLMSSATALYDEDEKAYFSPRQQ---GAGAVDAKKA 484
>pdb|3LXU|X Chain X, Crystal Structure Of Tripeptidyl Peptidase 2 (Tpp Ii)
Length = 1354
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
Query: 193 KYSILSGTSVACSHVTGAAAY----VKSFHPDWSPSSIKSALMTTAWSINATSNPGGEFA 248
K + +GTS A HV GA A +K + ++SP SIK A+ TA + +P FA
Sbjct: 454 KSQLXNGTSXAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLGYV-DP---FA 509
Query: 249 FGAGHIDPVKAISPGLVYEAFADDYVKFLCSLGYDTRK 286
G G ++ KA + D+ ++F +G + K
Sbjct: 510 QGHGLLNVEKAFEHLTEHRQSKDNXLRFSVRVGNNADK 547
>pdb|1EA7|A Chain A, Sphericase
Length = 310
Score = 35.4 bits (80), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 47/98 (47%), Gaps = 17/98 (17%)
Query: 145 VPDFSSRGPNTIIPDIV----KPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGT 200
V D+SSRG + D V +ISAPG + + + Y+ +SGT
Sbjct: 203 VADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTWYNG-------------GYNTISGT 249
Query: 201 SVACSHVTGAAAYVKSFHPDWSPSSIKSALMTTAWSIN 238
+A HV+G AA + + +P S + ++S L A S++
Sbjct: 250 XMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVD 287
>pdb|1R6V|A Chain A, Crystal Structure Of Fervidolysin From Fervidobacterium
Pennivorans, A Keratinolytic Enzyme Related To
Subtilisin
Length = 671
Score = 35.4 bits (80), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Query: 165 ISAPGVEILAGFSPAVEPSLLPGDKRSV------KYSILSGTSVACSHVTGAAAYVKSFH 218
+ APGV IL+ P + G +V Y GTS+A HVTG A +
Sbjct: 340 VGAPGVTILSTV-PGEDSIGYEGHNENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQKF 398
Query: 219 PDWSPSSIKSALMTTAWSINA 239
P+ P I+ L TA+ N
Sbjct: 399 PNAKPWQIRKLLENTAFDFNG 419
>pdb|3MPG|A Chain A, Dihydroorotase From Bacillus Anthracis
pdb|3MPG|B Chain B, Dihydroorotase From Bacillus Anthracis
Length = 428
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 336 QGNSKYKAKVTVDP--KIKINVAPSDLS-FKSLKEKQSFVVTVSGVGLKENSMVSASL 390
Q K KA V V P I + A S+++ F++LKE +F T GVG+++ SM+ A++
Sbjct: 108 QNRIKEKAHVNVLPYGAITVRQAGSEMTDFETLKELGAFAFTDDGVGVQDASMMLAAM 165
>pdb|3VHQ|A Chain A, Crystal Structure Of The Ca6 Site Mutant Of
Pro-Sa-Subtilisin
Length = 398
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 29/116 (25%)
Query: 162 KPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHVTGAAAYVKSFH--- 218
+P++SAPGV+IL+ + P D Y L GT++A HV+G A +++ +
Sbjct: 298 QPEVSAPGVDILSTY---------PDDS----YETLMGTAMATPHVSGVVALIQAAYYQK 344
Query: 219 ----------PDWSPSSIKSALMTTAWSINATSNPGGEFAFGAGHIDPVKAISPGL 264
D S ++++ L TA ++ T G + +G G + A+ L
Sbjct: 345 YGKILPVGTFDDISKNTVRGILHITADALGPT---GWDADYGYGVVRAALAVQAAL 397
>pdb|2Z30|A Chain A, Crystal Structure Of Complex Form Between
Mat-Tk-Subtilisin And Tk- Propeptide
Length = 320
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 13/57 (22%)
Query: 162 KPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHVTGAAAYVKSFH 218
+P++SAPGV+IL+ + P D Y L GT++A HV+G A +++ +
Sbjct: 220 QPEVSAPGVDILSTY---------PDDS----YETLMGTAMATPHVSGVVALIQAAY 263
>pdb|2Z56|A Chain A, Crystal Structure Of G56s-Propeptide:s324a-Subtilisin
Complex
pdb|2Z57|A Chain A, Crystal Structure Of G56e-Propeptide:s324a-Subtilisin
Complex
pdb|2Z58|A Chain A, Crystal Structure Of G56w-Propeptide:s324a-Subtilisin
Complex
Length = 318
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 13/57 (22%)
Query: 162 KPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHVTGAAAYVKSFH 218
+P++SAPGV+IL+ + P D Y L GT++A HV+G A +++ +
Sbjct: 218 QPEVSAPGVDILSTY---------PDDS----YETLMGTAMATPHVSGVVALIQAAY 261
>pdb|2ZWP|A Chain A, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
pdb|2ZWP|B Chain B, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
Length = 398
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 13/57 (22%)
Query: 162 KPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHVTGAAAYVKSFH 218
+P++SAPGV+IL+ + P D Y L GT++A HV+G A +++ +
Sbjct: 298 QPEVSAPGVDILSTY---------PDDS----YETLMGTAMATPHVSGVVALIQAAY 341
>pdb|2ZWO|A Chain A, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|B Chain B, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|C Chain C, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
Length = 398
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 13/57 (22%)
Query: 162 KPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHVTGAAAYVKSFH 218
+P++SAPGV+IL+ + P D Y L GT++A HV+G A +++ +
Sbjct: 298 QPEVSAPGVDILSTY---------PDDS----YETLMGTAMATPHVSGVVALIQAAY 341
>pdb|2E1P|A Chain A, Crystal Structure Of Pro-Tk-Subtilisin
Length = 398
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 13/57 (22%)
Query: 162 KPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHVTGAAAYVKSFH 218
+P++SAPGV+IL+ + P D Y L GT++A HV+G A +++ +
Sbjct: 298 QPEVSAPGVDILSTY---------PDDS----YETLMGTAMATPHVSGVVALIQAAY 341
>pdb|2Z2Z|A Chain A, Crystal Structure Of Unautoprocessed Form Of Tk-subtilisin
Soaked By 10mm Cacl2
Length = 395
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 13/57 (22%)
Query: 162 KPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHVTGAAAYVKSFH 218
+P++SAPGV+IL+ + P D Y L GT++A HV+G A +++ +
Sbjct: 295 QPEVSAPGVDILSTY---------PDDS----YETLMGTAMATPHVSGVVALIQAAY 338
>pdb|2ZRQ|A Chain A, Crystal Structure Of S324a-Subtilisin
pdb|3A3N|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Two C-Terminal Residues
pdb|3A3O|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Five C-Terminal Residues
Length = 329
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 13/57 (22%)
Query: 162 KPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHVTGAAAYVKSFH 218
+P++SAPGV+IL S P D Y L GT++A HV+G A +++ +
Sbjct: 229 QPEVSAPGVDIL---------STYPDDS----YETLMGTAMATPHVSGVVALIQAAY 272
>pdb|3A3P|A Chain A, Crystal Structure Of Complex Between E201aSA-Subtilisin
And Tk-Propeptide
Length = 329
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 13/57 (22%)
Query: 162 KPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHVTGAAAYVKSFH 218
+P++SAPGV+IL S P D Y L GT++A HV+G A +++ +
Sbjct: 229 QPEVSAPGVDIL---------STYPDDS----YETLMGTAMATPHVSGVVALIQAAY 272
>pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
pdb|1XF1|B Chain B, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
Length = 926
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 29/112 (25%)
Query: 161 VKPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHVTGAAAYVK----S 216
+KPDI+APG +IL+ + + KY+ LSGTS + V G ++ +
Sbjct: 380 IKPDIAAPGQDILSSVA-------------NNKYAKLSGTSXSAPLVAGIXGLLQKQYET 426
Query: 217 FHPDWSPSS----IKSALMTTAWSI-----NATSNPGGEFAFGAGHIDPVKA 259
+PD +PS K L ++A ++ A +P + GAG +D KA
Sbjct: 427 QYPDXTPSERLDLAKKVLXSSATALYDEDEKAYFSPRQQ---GAGAVDAKKA 475
>pdb|3HJR|A Chain A, Crystal Structure Of Serine Protease Of Aeromonas Sobria
Length = 600
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 10/95 (10%)
Query: 155 TIIPDIVKPDISAPGVEILAGFSPAVEPSL--LPGDKR---SVKYS-ILSGTSVACSHVT 208
T P +V D+ PG ++ G++ +PS L G+ + S Y+ +++GTS A +
Sbjct: 288 TDTPAMVTTDL--PGCDM--GYNRTDDPSTNRLHGNSQLDASCDYNGVMNGTSSATPSTS 343
Query: 209 GAAAYVKSFHPDWSPSSIKSALMTTAWSINATSNP 243
GA A + S +PD S ++ L +A ++A P
Sbjct: 344 GAMALLMSAYPDLSVRDLRDLLARSATRVDAKHQP 378
>pdb|2Z2X|A Chain A, Crystal Structure Of Mature Form Of Tk-Subtilisin
Length = 318
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 13/57 (22%)
Query: 162 KPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHVTGAAAYVKSFH 218
+P++SAPGV+IL+ + P D Y L GT +A HV+G A +++ +
Sbjct: 218 QPEVSAPGVDILSTY---------PDD----SYETLMGTXMATPHVSGVVALIQAAY 261
>pdb|2Z2Y|A Chain A, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
pdb|2Z2Y|C Chain C, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
Length = 318
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 13/57 (22%)
Query: 162 KPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHVTGAAAYVKSFH 218
+P++SAPGV+IL+ + P D Y L GT +A HV+G A +++ +
Sbjct: 218 QPEVSAPGVDILSTY---------PDD----SYETLMGTCMATPHVSGVVALIQAAY 261
>pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease
Length = 280
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 18/87 (20%)
Query: 164 DISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHVTGAAAYVKSFHPDWSP 223
D+ APGV+I+ S + G++ Y+ +SGTS+A HV G AA + S +
Sbjct: 202 DVVAPGVDIV---------STITGNR----YAYMSGTSMASPHVAGLAALLAS--QGRNN 246
Query: 224 SSIKSALMTTAWSINATSNPGGEFAFG 250
I+ A+ TA I+ T G F +G
Sbjct: 247 IEIRQAIEQTADKISGT---GTYFKYG 270
>pdb|2PVX|A Chain A, Nmr And X-ray Analysis Of Structural Additivity In Metal
Binding Site-swapped Hybrids Of Rubredoxin
pdb|2PVX|B Chain B, Nmr And X-ray Analysis Of Structural Additivity In Metal
Binding Site-swapped Hybrids Of Rubredoxin
pdb|2PVX|C Chain C, Nmr And X-ray Analysis Of Structural Additivity In Metal
Binding Site-swapped Hybrids Of Rubredoxin
pdb|2PVX|D Chain D, Nmr And X-ray Analysis Of Structural Additivity In Metal
Binding Site-swapped Hybrids Of Rubredoxin
pdb|2PVX|E Chain E, Nmr And X-ray Analysis Of Structural Additivity In Metal
Binding Site-swapped Hybrids Of Rubredoxin
pdb|2PVX|F Chain F, Nmr And X-ray Analysis Of Structural Additivity In Metal
Binding Site-swapped Hybrids Of Rubredoxin
pdb|2PVX|G Chain G, Nmr And X-ray Analysis Of Structural Additivity In Metal
Binding Site-swapped Hybrids Of Rubredoxin
pdb|2PVX|H Chain H, Nmr And X-ray Analysis Of Structural Additivity In Metal
Binding Site-swapped Hybrids Of Rubredoxin
Length = 54
Score = 32.0 bits (71), Expect = 0.83, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 255 DPVKAISPGLVYEAFADDYVKFLCSLGYD 283
DP ISPG +E DD+V LC +G D
Sbjct: 19 DPDNGISPGTKFEELPDDWVCPLCGVGKD 47
>pdb|4DZT|A Chain A, Aqualysin I: The Crystal Structure Of A Serine Protease
From An Extreme Thermophile, Thermus Aquaticus Yt-1
Length = 276
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 197 LSGTSVACSHVTGAAAYVKSFHPDWSPSSIKSALMTTA 234
L+GTS+A HV G AA +P +P+S+ SA++ A
Sbjct: 218 LNGTSMATPHVAGVAALYLEQNPSATPASVASAILNGA 255
>pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like Enzyme
From A Psychrotroph Serratia Species
Length = 278
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 11/71 (15%)
Query: 164 DISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHVTGAAAYVKSFHPDWSP 223
DI APG I + + + + + +SGTS+A HV G AA +P+ SP
Sbjct: 198 DIYAPGSSITSSWYTSNSAT-----------NTISGTSMASPHVAGVAALYLDENPNLSP 246
Query: 224 SSIKSALMTTA 234
+ + + L T A
Sbjct: 247 AQVTNLLKTRA 257
>pdb|1THM|A Chain A, Crystal Structure Of Thermitase At 1.4 Angstroms
Resolution
Length = 279
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 20/97 (20%)
Query: 164 DISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHVTGAAAYVKSFHPDWSP 223
D++APG I + + + Y+ LSGTS+A HV G A + S S
Sbjct: 201 DVAAPGSSIYSTYPTST-------------YASLSGTSMATPHVAGVAGLLASQGR--SA 245
Query: 224 SSIKSALMTTAWSINATSNPGGEFAFGAGHIDPVKAI 260
S+I++A+ TA I+ T G + + G ++ KA+
Sbjct: 246 SNIRAAIENTADKISGT----GTY-WAKGRVNAYKAV 277
>pdb|3TI9|A Chain A, Crystal Structure Of The Basic Protease Bprb From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 14/101 (13%)
Query: 165 ISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHVTGAAAYV----KSFHPD 220
++APG IL+ G RS Y + +GTS+A HV+G AA V S
Sbjct: 247 LAAPGTNILSTIDVG-----QAGPVRS-SYGMKAGTSMAAPHVSGVAALVISAANSIGKT 300
Query: 221 WSPSSIKSALMTTAWSINATSNPGGEFAFGAGHIDPVKAIS 261
+PS + L+ T N + G G+G +D A++
Sbjct: 301 LTPSELSDILVRTTSRFNGRLDRG----LGSGIVDANAAVN 337
>pdb|3TI7|A Chain A, Crystal Structure Of The Basic Protease Bprv From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 14/101 (13%)
Query: 165 ISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHVTGAAAYV----KSFHPD 220
++APG IL+ G RS Y + +GTS+A HV+G AA V S
Sbjct: 247 LAAPGTNILSTIDVG-----QAGPVRS-SYGMKAGTSMAAPHVSGVAALVISAANSIGKT 300
Query: 221 WSPSSIKSALMTTAWSINATSNPGGEFAFGAGHIDPVKAIS 261
+PS + L+ T N + G G+G +D A++
Sbjct: 301 LTPSELSDILVRTTSRFNGRLDRG----LGSGIVDANAAVN 337
>pdb|1IC6|A Chain A, Structure Of A Serine Protease Proteinase K From
Tritirachium Album Limber At 0.98 A Resolution
pdb|1P7V|A Chain A, Structure Of A Complex Formed Between Proteinase K And A
Designed Heptapeptide Inhibitor Pro-Ala-Pro-Phe-Ala-Ala-
Ala At Atomic Resolution
pdb|1P7W|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Designed Heptapeptide Inhibitor
Pro-Ala-Pro-Phe-Ala-Ser-Ala At Atomic Resolution
pdb|2HD4|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Octapeptide Gly-Asp-Glu-Gln-Gly-Glu-Asn-Lys
At 2.15 A Resolution
pdb|2DQK|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Specific Lactoferrin Peptide Val-Leu-Leu-His At 1.93 A
Resolution
pdb|2HPZ|A Chain A, Crystal Structure Of Proteinase K Complex With A Synthetic
Peptide Klkllvvirlk At 1.69 A Resolution
pdb|2DUJ|A Chain A, Crystal Structure Of The Complex Formed Between Proteinase
K And A Synthetic Peptide Leu-Leu-Phe-Asn-Asp At 1.67 A
Resolution
pdb|2ID8|A Chain A, Crystal Structure Of Proteinase K
pdb|2G4V|A Chain A, Anomalous Substructure Of Proteinase K
pdb|2PQ2|A Chain A, Structure Of Serine Proteinase K Complex With A Highly
Flexible Hydrophobic Peptide At 1.8a Resolution
pdb|2PWA|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Alanine Boronic Acid At 0.83a Resolution
pdb|2PWB|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Coumarin At 1.9 A Resolution
pdb|2PYZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Auramine At 1.8a Resolution
pdb|2V8B|A Chain A, Sad Structure Solution Of Proteinase K Grown In Selenate
Solution
pdb|3DYB|A Chain A, Proteinase K- Digalacturonic Acid Complex
pdb|3GT3|A Chain A, Structure Of Proteinase K With The Mad Triangle B3c
pdb|3GT4|A Chain A, Structure Of Proteinase K With The Magic Triangle I3c
pdb|3OSZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With An
Antimicrobial Nonapeptide, At 2.26 A Resolution
pdb|3L1K|A Chain A, Sad Structure Solution Of Proteinase K Grown In Potassium
Tellurate Solution
pdb|3AJ8|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
H2o Solution Using Peg 8000
pdb|3AJ9|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
D2o Solution Using Peg 8000
pdb|3Q40|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution.
pdb|3Q5G|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4 Solution
pdb|3QMP|A Chain A, Selenium Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution And Soaked In Selenate.
pdb|4B5L|A Chain A, The 1.6 A High Energy Room Temperature Structure Of
Proteinase K At 38.4 Kev And 0.04 Mgy
pdb|4FON|A Chain A, High Energy Remote Sad Structure Solution Of Proteinase K
From The 37.8 Kev Tellurium K Edge
Length = 279
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 13/64 (20%)
Query: 164 DISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHVTGAAAYVKSFHPDWSP 223
DI PG +IL+ + + G RS+ SGTS+A HV G AAY+ + +
Sbjct: 200 DIFGPGTDILS--------TWIGGSTRSI-----SGTSMATPHVAGLAAYLMTLGKTTAA 246
Query: 224 SSIK 227
S+ +
Sbjct: 247 SACR 250
>pdb|4ABR|Z Chain Z, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 405
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 449 FYQFTIGNSANSFELPGSELPLVYGKDVISLCRKHIHKN 487
+ + + N +E PG E+P++ G +++L + +HKN
Sbjct: 149 LVEMEVRDLLNQYEFPGDEVPVIRGSALLAL--EEMHKN 185
>pdb|1EFT|A Chain A, The Crystal Structure Of Elongation Factor Ef-Tu From
Thermus Aquaticus In The Gtp Conformation
Length = 405
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 449 FYQFTIGNSANSFELPGSELPLVYGKDVISLCRKHIHKN 487
+ + + N +E PG E+P++ G +++L + +HKN
Sbjct: 149 LVEMEVRDLLNQYEFPGDEVPVIRGSALLAL--EEMHKN 185
>pdb|1TTT|A Chain A, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|B Chain B, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|C Chain C, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TUI|A Chain A, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|B Chain B, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|C Chain C, Intact Elongation Factor Tu In Complex With Gdp
pdb|1B23|P Chain P, E. Coli Cysteinyl-Trna And T. Aquaticus Elongation Factor
Ef-Tu:gtp Ternary Complex
pdb|1ZC8|Y Chain Y, Coordinates Of Tmrna, Smpb, Ef-tu And H44 Fitted Into
Cryo- Em Map Of The 70s Ribosome And Tmrna Complex
pdb|1OB5|A Chain A, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|C Chain C, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|E Chain E, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
Length = 405
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 449 FYQFTIGNSANSFELPGSELPLVYGKDVISLCRKHIHKN 487
+ + + N +E PG E+P++ G +++L + +HKN
Sbjct: 149 LVEMEVRDLLNQYEFPGDEVPVIRGSALLAL--EEMHKN 185
>pdb|1TEC|E Chain E, Crystallographic Refinement By Incorporation Of Molecular
Dynamics. The Thermostable Serine Protease Thermitase
Complexed With Eglin-C
pdb|2TEC|E Chain E, Molecular Dynamics Refinement Of A Thermitase-Eglin-C
Complex At 1.98 Angstroms Resolution And Comparison Of
Two Crystal Forms That Differ In Calcium Content
pdb|3TEC|E Chain E, Calcium Binding To Thermitase. Crystallographic Studies Of
Thermitase At 0, 5 And 100 Mm Calcium
Length = 279
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 20/97 (20%)
Query: 164 DISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHVTGAAAYVKSFHPDWSP 223
D++APG I + + + Y+ LSGTS+A HV G A + S S
Sbjct: 201 DVAAPGSWIYSTYPTST-------------YASLSGTSMATPHVAGVAGLLASQGR--SA 245
Query: 224 SSIKSALMTTAWSINATSNPGGEFAFGAGHIDPVKAI 260
S+I++A+ TA I+ T G + + G ++ KA+
Sbjct: 246 SNIRAAIENTADKISGT----GTY-WAKGRVNAYKAV 277
>pdb|1PEK|E Chain E, Structure Of The Complex Of Proteinase K With A
Substrate-analogue Hexa-peptide Inhibitor At 2.2
Angstroms Resolution
pdb|1HT3|A Chain A, Mercury Induced Modifications In The Stereochemistry Of
The Active Site Through Cys-73 In A Serine Protease:
Crystal Structure Of The Complex Of A Partially Modified
Proteinase K With Mercury At 1.8 A Resolution
pdb|1PFG|A Chain A, Strategy To Design Inhibitors: Structure Of A Complex Of
Proteinase K With A Designed Octapeptide Inhibitor
N-Ac-Pro-Ala-Pro-Phe-Dala-Ala- Ala-Ala-Nh2 At 2.5a
Resolution
Length = 279
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 13/64 (20%)
Query: 164 DISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHVTGAAAYVKSFHPDWSP 223
DI PG IL+ + + G RS+ SGTS+A HV G AAY+ + +
Sbjct: 200 DIFGPGTSILS--------TWIGGSTRSI-----SGTSMATPHVAGLAAYLMTLGKTTAA 246
Query: 224 SSIK 227
S+ +
Sbjct: 247 SACR 250
>pdb|3PRK|E Chain E, Inhibition Of Proteinase K By
Methoxysuccinyl-Ala-Ala-Pro-Ala- Chloromethyl Ketone. An
X-Ray Study At 2.2-Angstroms Resolution
pdb|1BJR|E Chain E, Complex Formed Between Proteolytically Generated
Lactoferrin Fragment And Proteinase K
pdb|1CNM|A Chain A, Enhancement Of Catalytic Efficiency Of Proteinase K
Through Exposure To Anhydrous Organic Solvent At 70
Degrees Celsius
pdb|1EGQ|A Chain A, Enhancement Of Enzyme Activity Through Three-Phase
Partitioning: Crystal Structure Of A Modified Serine
Proteinase At 1.5 A Resolution
pdb|1OYO|A Chain A, Regulation Of Protease Activity By Melanin: Crystal
Structure Of The Complex Formed Between Proteinase K And
Melanin Monomers At 2.0 Resolution
pdb|1PJ8|A Chain A, Structure Of A Ternary Complex Of Proteinase K, Mercury
And A Substrate-Analogue Hexapeptide At 2.2 A Resolution
pdb|2DP4|E Chain E, Crystal Structure Of The Complex Formed Between Proteinase
K And A Human Lactoferrin Fragment At 2.9 A Resolution
pdb|1PTK|A Chain A, Studies On The Inhibitory Action Of Mercury Upon
Proteinase K
pdb|2PKC|A Chain A, Crystal Structure Of Calcium-Free Proteinase K At 1.5
Angstroms Resolution
pdb|2PRK|A Chain A, Synchrotron X-Ray Data Collection And Restrained Least-
Squares Refinement Of The Crystal Structure Of
Proteinase K At 1.5 Angstroms Resolution
pdb|3D9Q|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id23-1 Beamline
pdb|3DDZ|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE0|X Chain X, Proteinase K By Lb Nanotemplate Method After The Second
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE2|X Chain X, Proteinase K By Lb Nanotemplate Method After The Fourth
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- Ray Dose On Esrf Id23-1 Beamline
pdb|3DE4|X Chain X, Proteinase K By Classical Hanging Drop Method After The
First Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE5|X Chain X, Roteinase K By Classical Hanging Drop Method After The
Second Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE6|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Third Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE7|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Fourth Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DVQ|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id14-2 Beamline
pdb|3DVR|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DVS|X Chain X, Proteinase K By Lb Nanotmplate Method After The Second
Step Of High Dose On Esrf Id14-2 Beamline
pdb|3DW1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DW3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X Ray Dose On Esrf Id 14-2 Beamline
pdb|3DWE|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X- Ray Dose On Esrf Id14-2 Beamline
pdb|3I2Y|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- On Id14-2 Beamline At Esrf
pdb|3I30|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X-R Id14-2 Beamline At Esrf
pdb|3I37|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dos 2 Beamline At Esrf
pdb|3I34|X Chain X, Proteinase K By Lb Nanotemplate Method After High X-Ray
Dose On Id14-2 Beamline At Esrf
pdb|3PTL|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Nonapeptide,
Lys-Gly-Glu-Ala-Asp-Ala-Leu-Ser-Leu-Asp At 1.3 A
Resolution.
pdb|4DJ5|X Chain X, Proteinase K By Langmuir-Blodgett Hanging Drop Method At
1.8a Resolution For Unique Water Distribution
Length = 279
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 13/64 (20%)
Query: 164 DISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHVTGAAAYVKSFHPDWSP 223
DI PG IL+ + + G RS+ SGTS+A HV G AAY+ + +
Sbjct: 200 DIFGPGTSILS--------TWIGGSTRSI-----SGTSMATPHVAGLAAYLMTLGKTTAA 246
Query: 224 SSIK 227
S+ +
Sbjct: 247 SACR 250
>pdb|2WV7|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 329
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 18/87 (20%)
Query: 164 DISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHVTGAAAYV-----KSFH 218
DI APGV I + + + Y+ LSGT++A HV GA A + +F
Sbjct: 226 DIVAPGVGIKSTYLDS-------------GYAELSGTAMAAPHVAGALALIINLAEDAFK 272
Query: 219 PDWSPSSIKSALMTTAWSINATSNPGG 245
S + I + L+ A I T+ G
Sbjct: 273 RSLSETEIYAQLVRRATPIGFTAQAEG 299
>pdb|2X8J|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 18/87 (20%)
Query: 164 DISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHVTGAAAYV-----KSFH 218
DI APGV I + + + Y+ LSGT++A HV GA A + +F
Sbjct: 226 DIVAPGVGIKSTYLDS-------------GYAELSGTAMAAPHVAGALALIINLAEDAFK 272
Query: 219 PDWSPSSIKSALMTTAWSINATSNPGG 245
S + I + L+ A I T+ G
Sbjct: 273 RSLSETEIYAQLVRRATPIGFTAQAEG 299
>pdb|2X8J|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 18/87 (20%)
Query: 164 DISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHVTGAAAYV-----KSFH 218
DI APGV I + + + Y+ LSGT++A HV GA A + +F
Sbjct: 226 DIVAPGVGIKSTYLDS-------------GYAELSGTAMAAPHVAGALALIINLAEDAFK 272
Query: 219 PDWSPSSIKSALMTTAWSINATSNPGG 245
S + I + L+ A I T+ G
Sbjct: 273 RSLSETEIYAQLVRRATPIGFTAQAEG 299
>pdb|4AKS|A Chain A, Patg Macrocyclase Domain
pdb|4AKS|B Chain B, Patg Macrocyclase Domain
Length = 360
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 45/103 (43%), Gaps = 23/103 (22%)
Query: 136 AANVSGAPGVPDFSSRGPNTIIPDIVKPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYS 195
AA V G P FS+ G N K I APG EIL G P E +
Sbjct: 246 AAKVDGTPC--HFSNWGGNN-----TKEGILAPGEEIL-GAQPCTEEPVR---------- 287
Query: 196 ILSGTSVACSHVTGAAAYVKSFHPDW----SPSSIKSALMTTA 234
L+GTS+A +TG +A + S ++++AL+ TA
Sbjct: 288 -LTGTSMAAPVMTGISALLMSLQVQQGKPVDAEAVRTALLKTA 329
>pdb|4AKT|A Chain A, Patg Macrocyclase In Complex With Peptide
pdb|4AKT|B Chain B, Patg Macrocyclase In Complex With Peptide
Length = 360
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 45/103 (43%), Gaps = 23/103 (22%)
Query: 136 AANVSGAPGVPDFSSRGPNTIIPDIVKPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYS 195
AA V G P FS+ G N K I APG EIL G P E +
Sbjct: 246 AAKVDGTPC--HFSNWGGNN-----TKEGILAPGEEIL-GAQPCTEEPVR---------- 287
Query: 196 ILSGTSVACSHVTGAAAYVKSFHPDW----SPSSIKSALMTTA 234
L+GTS+A +TG +A + S ++++AL+ TA
Sbjct: 288 -LTGTSMAAPVMTGISALLMSLQVQQGKPVDAEAVRTALLKTA 329
>pdb|4H6X|A Chain A, Structure Of Patellamide Maturation Protease Patg
pdb|4H6X|B Chain B, Structure Of Patellamide Maturation Protease Patg
Length = 357
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 45/103 (43%), Gaps = 23/103 (22%)
Query: 136 AANVSGAPGVPDFSSRGPNTIIPDIVKPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYS 195
AA V G P FS+ G N K I APG EIL G P E +
Sbjct: 228 AAKVDGTPC--HFSNWGGNN-----TKEGILAPGEEIL-GAQPCTEEPVR---------- 269
Query: 196 ILSGTSVACSHVTGAAAYVKSFHPDW----SPSSIKSALMTTA 234
L+GTS+A +TG +A + S ++++AL+ TA
Sbjct: 270 -LTGTSMAAPVMTGISALLMSLQVQQGKPVDAEAVRTALLKTA 311
>pdb|2XRM|A Chain A, Processed Intracellular Subtilisin From B. Clausii
Length = 311
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 18/87 (20%)
Query: 164 DISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHVTGAAAYV-----KSFH 218
DI APGV I + + + Y+ LSGT++A HV GA A + +F
Sbjct: 208 DIVAPGVGIKSTYLDS-------------GYAELSGTAMAAPHVAGALALIINLAEDAFK 254
Query: 219 PDWSPSSIKSALMTTAWSINATSNPGG 245
S + I + L+ A I T+ G
Sbjct: 255 RSLSETEIYAQLVRRATPIGFTAQAEG 281
>pdb|1T9Q|A Chain A, Crystal Structure Of V44l Cp Rubredoxin
Length = 54
Score = 28.5 bits (62), Expect = 9.9, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 255 DPVKAISPGLVYEAFADDYVKFLCSLGYD 283
DP ++PG ++ DD+V LC LG D
Sbjct: 19 DPDNGVNPGTDFKDIPDDWVCPLCGLGKD 47
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,953,040
Number of Sequences: 62578
Number of extensions: 702625
Number of successful extensions: 1556
Number of sequences better than 100.0: 109
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 1472
Number of HSP's gapped (non-prelim): 114
length of query: 497
length of database: 14,973,337
effective HSP length: 103
effective length of query: 394
effective length of database: 8,527,803
effective search space: 3359954382
effective search space used: 3359954382
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)