Query 037246
Match_columns 497
No_of_seqs 438 out of 3265
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 10:15:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037246.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037246hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05562 Peptidases_S53_like Pe 99.9 1.8E-27 3.8E-32 239.1 12.3 112 132-261 147-274 (275)
2 cd07479 Peptidases_S8_SKI-1_li 99.9 4.3E-27 9.3E-32 233.8 13.4 173 51-238 1-254 (255)
3 PTZ00262 subtilisin-like prote 99.9 1.9E-26 4.2E-31 249.5 12.2 98 145-266 521-618 (639)
4 cd07489 Peptidases_S8_5 Peptid 99.9 3.4E-26 7.4E-31 233.3 13.3 107 146-265 189-302 (312)
5 cd04852 Peptidases_S8_3 Peptid 99.9 5.3E-26 1.1E-30 231.5 14.2 72 161-235 236-307 (307)
6 cd07497 Peptidases_S8_14 Pepti 99.9 4.4E-26 9.6E-31 232.6 13.3 88 142-234 218-311 (311)
7 cd07475 Peptidases_S8_C5a_Pept 99.9 6.4E-26 1.4E-30 234.2 12.9 106 141-261 230-346 (346)
8 cd07476 Peptidases_S8_thiazoli 99.9 4.4E-25 9.6E-30 220.8 12.2 167 50-239 2-254 (267)
9 cd07474 Peptidases_S8_subtilis 99.9 3.3E-24 7.1E-29 216.3 14.7 107 141-259 188-295 (295)
10 cd07481 Peptidases_S8_Bacillop 99.9 5E-24 1.1E-28 212.4 13.8 89 132-235 174-264 (264)
11 cd05561 Peptidases_S8_4 Peptid 99.9 3.7E-24 8.1E-29 210.7 12.4 96 132-252 144-239 (239)
12 cd07478 Peptidases_S8_CspA-lik 99.9 7.6E-24 1.6E-28 226.6 13.2 102 134-252 347-455 (455)
13 KOG1153 Subtilisin-related pro 99.9 4.1E-24 8.8E-29 218.4 9.3 195 18-235 161-461 (501)
14 cd04843 Peptidases_S8_11 Pepti 99.9 5.3E-23 1.1E-27 206.9 14.2 89 135-234 181-276 (277)
15 cd04077 Peptidases_S8_PCSK9_Pr 99.9 3E-23 6.6E-28 205.4 12.2 164 50-236 17-255 (255)
16 cd07493 Peptidases_S8_9 Peptid 99.9 7.1E-23 1.5E-27 203.7 13.6 89 132-235 173-261 (261)
17 cd07484 Peptidases_S8_Thermita 99.9 6.9E-23 1.5E-27 203.3 12.3 172 39-237 9-259 (260)
18 cd04059 Peptidases_S8_Protein_ 99.9 7.1E-23 1.5E-27 206.9 12.6 85 133-235 206-297 (297)
19 cd07485 Peptidases_S8_Fervidol 99.9 6.8E-23 1.5E-27 205.2 12.4 87 132-233 185-273 (273)
20 KOG4266 Subtilisin kexin isozy 99.9 5.2E-22 1.1E-26 208.1 16.6 194 49-261 192-465 (1033)
21 cd07487 Peptidases_S8_1 Peptid 99.9 2.5E-22 5.5E-27 198.9 13.6 98 132-235 163-264 (264)
22 cd07483 Peptidases_S8_Subtilis 99.9 1.6E-22 3.5E-27 204.7 11.3 82 134-235 207-291 (291)
23 cd04847 Peptidases_S8_Subtilis 99.9 2.1E-22 4.6E-27 203.5 9.7 102 132-235 171-291 (291)
24 cd04842 Peptidases_S8_Kp43_pro 99.9 9.2E-22 2E-26 198.1 13.9 85 145-235 201-293 (293)
25 cd07494 Peptidases_S8_10 Pepti 99.9 1.9E-21 4E-26 197.7 13.5 78 157-239 194-287 (298)
26 cd07480 Peptidases_S8_12 Pepti 99.9 2.6E-21 5.6E-26 196.2 13.7 105 136-257 190-296 (297)
27 cd07490 Peptidases_S8_6 Peptid 99.8 3.6E-21 7.8E-26 190.0 11.5 95 132-235 151-254 (254)
28 cd07498 Peptidases_S8_15 Pepti 99.8 1.2E-20 2.6E-25 185.1 11.0 90 132-233 153-242 (242)
29 cd07492 Peptidases_S8_8 Peptid 99.8 1.9E-20 4.1E-25 181.7 10.9 60 163-235 163-222 (222)
30 cd07496 Peptidases_S8_13 Pepti 99.8 2.7E-20 5.8E-25 187.6 12.5 94 132-233 190-285 (285)
31 PF00082 Peptidase_S8: Subtila 99.8 4.4E-21 9.5E-26 191.5 6.2 117 134-261 166-282 (282)
32 cd04857 Peptidases_S8_Tripepti 99.8 6.6E-20 1.4E-24 192.3 14.4 83 142-237 326-412 (412)
33 cd07477 Peptidases_S8_Subtilis 99.8 4E-20 8.7E-25 179.5 11.9 81 132-233 149-229 (229)
34 cd07473 Peptidases_S8_Subtilis 99.8 1.2E-19 2.5E-24 179.8 11.6 83 133-235 177-259 (259)
35 cd04848 Peptidases_S8_Autotran 99.8 2.2E-19 4.7E-24 177.3 10.3 87 133-235 179-267 (267)
36 cd07482 Peptidases_S8_Lantibio 99.8 7.7E-19 1.7E-23 176.8 11.1 95 132-233 190-294 (294)
37 cd07491 Peptidases_S8_7 Peptid 99.8 1.6E-18 3.5E-23 171.6 9.7 68 132-217 162-229 (247)
38 KOG1114 Tripeptidyl peptidase 99.7 5E-16 1.1E-20 169.9 13.2 101 144-261 453-557 (1304)
39 cd00306 Peptidases_S8_S53 Pept 99.5 1.3E-13 2.8E-18 132.5 11.1 83 132-233 158-241 (241)
40 cd07488 Peptidases_S8_2 Peptid 99.5 5.7E-14 1.2E-18 139.2 7.3 106 105-225 123-232 (247)
41 COG1404 AprE Subtilisin-like s 99.3 2.3E-11 5.1E-16 128.9 13.5 106 134-261 307-420 (508)
42 KOG3526 Subtilisin-like propro 99.1 5E-11 1.1E-15 120.4 3.6 71 192-262 376-458 (629)
43 PF06280 DUF1034: Fn3-like dom 98.6 2.9E-07 6.3E-12 80.2 9.1 87 314-404 2-112 (112)
44 cd04056 Peptidases_S53 Peptida 97.5 0.00024 5.3E-09 74.4 7.8 48 158-219 249-299 (361)
45 PF14874 PapD-like: Flagellar- 96.9 0.0078 1.7E-07 51.1 9.8 90 305-403 8-97 (102)
46 PF10633 NPCBM_assoc: NPCBM-as 95.6 0.05 1.1E-06 44.0 6.9 58 323-380 5-63 (78)
47 KOG3525 Subtilisin-like propro 94.9 0.14 3E-06 55.1 9.7 69 193-261 248-324 (431)
48 PF11614 FixG_C: IG-like fold 94.5 0.49 1.1E-05 41.3 10.6 57 323-380 31-87 (118)
49 PF06030 DUF916: Bacterial pro 93.8 0.55 1.2E-05 41.7 9.6 70 322-393 26-119 (121)
50 PF00345 PapD_N: Pili and flag 89.8 3.7 8E-05 35.8 10.1 68 324-393 15-89 (122)
51 COG1470 Predicted membrane pro 87.8 3.4 7.4E-05 44.4 9.8 72 323-394 397-469 (513)
52 cd04852 Peptidases_S8_3 Peptid 84.7 0.55 1.2E-05 47.8 2.0 66 33-98 1-70 (307)
53 PF00635 Motile_Sperm: MSP (Ma 83.7 10 0.00022 31.9 9.2 54 323-379 18-71 (109)
54 cd02120 PA_subtilisin_like PA_ 82.6 1.3 2.8E-05 38.8 3.3 39 441-484 1-44 (126)
55 PF05922 Inhibitor_I9: Peptida 81.1 0.72 1.6E-05 37.0 1.0 20 17-36 63-82 (82)
56 TIGR02745 ccoG_rdxA_fixG cytoc 81.1 8.1 0.00018 41.7 9.3 56 323-379 346-401 (434)
57 COG1470 Predicted membrane pro 76.4 28 0.00062 37.7 11.3 68 323-391 284-357 (513)
58 PF07610 DUF1573: Protein of u 74.2 13 0.00029 26.8 5.9 44 329-375 2-45 (45)
59 PF07718 Coatamer_beta_C: Coat 72.1 32 0.0007 31.3 9.1 69 323-393 69-138 (140)
60 cd07491 Peptidases_S8_7 Peptid 70.6 3.7 8E-05 40.7 3.0 63 397-460 131-196 (247)
61 COG4934 Predicted protease [Po 67.7 3.3 7.1E-05 49.2 2.2 26 193-218 472-497 (1174)
62 cd04056 Peptidases_S53 Peptida 63.9 4.5 9.8E-05 42.4 2.3 44 397-440 148-202 (361)
63 cd07497 Peptidases_S8_14 Pepti 62.6 5.8 0.00013 40.8 2.7 35 400-434 166-202 (311)
64 PF07705 CARDB: CARDB; InterP 62.2 82 0.0018 25.5 9.3 52 323-378 19-72 (101)
65 smart00635 BID_2 Bacterial Ig- 55.9 43 0.00093 27.0 6.3 39 352-395 4-42 (81)
66 PF12690 BsuPI: Intracellular 49.0 54 0.0012 26.9 5.8 20 359-379 53-72 (82)
67 PF05506 DUF756: Domain of unk 48.4 1.4E+02 0.003 24.4 8.3 60 324-392 19-78 (89)
68 cd07477 Peptidases_S8_Subtilis 47.6 13 0.00027 35.7 2.2 42 398-439 120-163 (229)
69 cd07479 Peptidases_S8_SKI-1_li 47.6 14 0.0003 36.7 2.5 40 398-437 124-165 (255)
70 cd07498 Peptidases_S8_15 Pepti 47.3 16 0.00035 35.4 2.9 38 401-438 129-166 (242)
71 cd07482 Peptidases_S8_Lantibio 43.2 22 0.00048 35.4 3.3 21 59-79 1-21 (294)
72 cd07476 Peptidases_S8_thiazoli 39.9 19 0.00042 36.0 2.2 39 397-435 133-171 (267)
73 cd07484 Peptidases_S8_Thermita 39.7 22 0.00048 34.9 2.5 40 398-437 149-188 (260)
74 cd07494 Peptidases_S8_10 Pepti 37.7 21 0.00046 36.3 2.1 30 49-79 12-41 (298)
75 PRK13203 ureB urease subunit b 36.6 1.1E+02 0.0023 26.5 5.7 50 323-373 18-81 (102)
76 cd04857 Peptidases_S8_Tripepti 36.4 28 0.00061 37.4 2.9 34 400-433 274-310 (412)
77 PRK15308 putative fimbrial pro 36.2 1.8E+02 0.0039 28.9 8.2 54 324-378 32-101 (234)
78 cd00407 Urease_beta Urease bet 36.1 1.1E+02 0.0023 26.4 5.6 50 323-373 18-81 (101)
79 PF00553 CBM_2: Cellulose bind 36.0 2.6E+02 0.0057 23.4 9.1 31 324-354 14-45 (101)
80 PF04744 Monooxygenase_B: Mono 35.3 1.2E+02 0.0027 32.0 7.1 51 323-377 263-335 (381)
81 TIGR00192 urease_beta urease, 35.1 1.2E+02 0.0026 26.1 5.8 50 323-373 18-81 (101)
82 cd07473 Peptidases_S8_Subtilis 33.2 38 0.00083 33.1 3.1 44 397-440 143-191 (259)
83 PF00927 Transglut_C: Transglu 32.9 2.7E+02 0.0059 23.3 8.0 55 323-379 15-78 (107)
84 PF00699 Urease_beta: Urease b 32.9 1.3E+02 0.0028 25.9 5.6 50 323-373 17-80 (100)
85 cd04842 Peptidases_S8_Kp43_pro 32.8 36 0.00078 33.9 2.9 37 401-437 146-185 (293)
86 cd05562 Peptidases_S53_like Pe 32.3 28 0.00061 35.1 2.0 40 398-437 118-159 (275)
87 cd07490 Peptidases_S8_6 Peptid 32.3 37 0.0008 33.1 2.8 38 401-438 127-164 (254)
88 cd04059 Peptidases_S8_Protein_ 31.2 39 0.00084 33.8 2.8 31 49-79 30-60 (297)
89 cd07485 Peptidases_S8_Fervidol 31.1 48 0.001 32.9 3.4 31 49-79 1-31 (273)
90 PLN03080 Probable beta-xylosid 30.9 1.1E+02 0.0023 35.8 6.6 53 324-377 685-744 (779)
91 PF13940 Ldr_toxin: Toxin Ldr, 30.7 31 0.00068 23.5 1.3 13 202-214 14-26 (35)
92 PRK13202 ureB urease subunit b 30.5 1.6E+02 0.0036 25.4 5.9 48 325-373 21-82 (104)
93 cd07493 Peptidases_S8_9 Peptid 30.4 33 0.00071 33.8 2.1 39 398-436 143-184 (261)
94 PRK13201 ureB urease subunit b 29.2 1.5E+02 0.0033 26.7 5.7 50 323-373 18-81 (136)
95 PRK13205 ureB urease subunit b 29.0 1.5E+02 0.0032 27.4 5.7 50 323-373 18-81 (162)
96 PRK15019 CsdA-binding activato 28.9 38 0.00083 31.1 2.0 32 196-228 78-109 (147)
97 TIGR03391 FeS_syn_CsdE cystein 28.6 37 0.0008 30.8 1.9 34 195-229 72-105 (138)
98 cd05561 Peptidases_S8_4 Peptid 28.6 42 0.00091 32.9 2.5 41 397-437 115-156 (239)
99 PRK15098 beta-D-glucoside gluc 28.0 1.5E+02 0.0032 34.6 7.0 55 323-379 667-729 (765)
100 PRK09918 putative fimbrial cha 27.8 4.3E+02 0.0094 25.8 9.4 53 323-376 38-93 (230)
101 cd07487 Peptidases_S8_1 Peptid 27.8 38 0.00082 33.1 2.0 40 398-437 134-175 (264)
102 PF13598 DUF4139: Domain of un 27.8 3.1E+02 0.0067 27.8 8.8 26 323-348 242-267 (317)
103 PRK09296 cysteine desufuration 26.5 43 0.00093 30.4 1.9 32 196-228 68-99 (138)
104 cd04077 Peptidases_S8_PCSK9_Pr 26.4 50 0.0011 32.3 2.6 43 398-440 142-185 (255)
105 cd00306 Peptidases_S8_S53 Pept 25.9 56 0.0012 30.6 2.8 38 401-438 131-171 (241)
106 KOG1114 Tripeptidyl peptidase 25.8 50 0.0011 38.9 2.6 24 54-77 77-100 (1304)
107 PRK13204 ureB urease subunit b 25.6 1.9E+02 0.004 26.8 5.7 50 323-373 41-104 (159)
108 cd07496 Peptidases_S8_13 Pepti 25.2 54 0.0012 32.7 2.6 44 397-440 161-205 (285)
109 PRK15295 fimbrial assembly cha 24.8 6.2E+02 0.014 24.7 9.9 56 323-381 33-95 (226)
110 TIGR01451 B_ant_repeat conserv 24.5 2.2E+02 0.0048 21.1 5.2 38 323-362 12-50 (53)
111 PRK15211 fimbrial chaperone pr 24.4 6.2E+02 0.013 24.9 9.8 56 323-381 36-97 (229)
112 PF02657 SufE: Fe-S metabolism 23.9 54 0.0012 29.1 2.0 33 196-229 59-91 (125)
113 PRK15192 fimbrial chaperone Bc 23.7 5.8E+02 0.013 25.2 9.5 56 323-381 36-103 (234)
114 PRK13198 ureB urease subunit b 23.7 2.1E+02 0.0046 26.4 5.8 50 323-373 46-109 (158)
115 PF02368 Big_2: Bacterial Ig-l 23.5 76 0.0016 25.2 2.7 38 352-395 4-41 (79)
116 cd07474 Peptidases_S8_subtilis 23.1 55 0.0012 32.6 2.2 36 398-433 145-182 (295)
117 COG2166 sufE Cysteine desulfur 22.9 51 0.0011 30.2 1.7 34 194-228 71-104 (144)
118 PRK15299 fimbrial chaperone pr 22.8 6.1E+02 0.013 24.7 9.4 53 323-378 36-96 (227)
119 PF01345 DUF11: Domain of unkn 22.6 2E+02 0.0044 22.5 5.0 17 323-339 41-57 (76)
120 cd04848 Peptidases_S8_Autotran 22.3 56 0.0012 31.6 2.0 24 56-79 1-24 (267)
121 TIGR00845 caca sodium/calcium 22.2 7.9E+02 0.017 29.4 11.4 53 325-378 416-475 (928)
122 cd04847 Peptidases_S8_Subtilis 22.0 51 0.0011 33.1 1.7 38 400-437 134-183 (291)
123 PF02845 CUE: CUE domain; Int 21.3 60 0.0013 22.8 1.5 23 212-234 6-28 (42)
124 PRK09926 putative chaperone pr 20.6 6.7E+02 0.014 24.8 9.3 55 323-378 39-101 (246)
No 1
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=99.95 E-value=1.8e-27 Score=239.07 Aligned_cols=112 Identities=29% Similarity=0.330 Sum_probs=89.2
Q ss_pred eceeeeccCCCCCcc---------------ccCCCCCCCCCCCCccCcEEecCC-ceeeccCCCCCCCCCCCCCCCcceE
Q 037246 132 SKSEAANVSGAPGVP---------------DFSSRGPNTIIPDIVKPDISAPGV-EILAGFSPAVEPSLLPGDKRSVKYS 195 (497)
Q Consensus 132 ~~~~v~~~~~~~~~a---------------~fSs~Gp~~~~~~~~KPDI~APG~-~I~s~~~~~~~~~~~~~~~~~~~y~ 195 (497)
..++|.+.+..+..+ .|+++||.. +..+||||+|||. ++.++..+ ..|.
T Consensus 147 ~vitVgA~~~~~~~~~~s~~~~~~~~s~~~~~~~~~p~~--~~~~~~di~Apgg~~~~~~~~~-------------~~~~ 211 (275)
T cd05562 147 GAIAVGAVDYGNTPAFGSDPAPGGTPSSFDPVGIRLPTP--EVRQKPDVTAPDGVNGTVDGDG-------------DGPP 211 (275)
T ss_pred CeEEEEeeccCCCcccccccccCCCcccccCCcccCcCC--CCCcCCeEEcCCcccccCCCcC-------------Ccee
Confidence 445666666655554 344556654 6789999999965 44554433 3699
Q ss_pred EecccchhHHHHHHHhhhhhccCCCCCHHHHHHHhhccccccCCCCCCCCCCcccceeeCccCCCC
Q 037246 196 ILSGTSVACSHVTGAAAYVKSFHPDWSPSSIKSALMTTAWSINATSNPGGEFAFGAGHIDPVKAIS 261 (497)
Q Consensus 196 ~~sGTSmAaP~VAGiaALl~s~~p~lsp~~ik~~L~~tA~~i~~~~~~~~~~~~G~G~vd~~~Al~ 261 (497)
.++|||||||||||++|||+|++|+++++|||++|+++|+++.. +.++..||||+||+.+|++
T Consensus 212 ~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~---~g~d~~~G~G~vda~~Av~ 274 (275)
T cd05562 212 NFFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMGE---PGYDNASGSGLVDADRAVA 274 (275)
T ss_pred ecccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCC---CCCCCCcCcCcccHHHHhh
Confidence 99999999999999999999999999999999999999998754 3466789999999999986
No 2
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=99.94 E-value=4.3e-27 Score=233.80 Aligned_cols=173 Identities=22% Similarity=0.161 Sum_probs=123.8
Q ss_pred ccCCCCCCCeEEEEeeceecCCCCCCCCCCCCC-CCCCCceeecCCcccccCCC--------------------------
Q 037246 51 KRNPSVESDIVIGVLDSGIWPELESFNDEGLSD-PPKKWKGVCEGGKNFTCNSF-------------------------- 103 (497)
Q Consensus 51 w~~~~~G~gV~VaVlDTGI~~~Hp~f~~~~~~~-~~~~~~g~~~~G~~~~c~~~-------------------------- 103 (497)
|.++.+|+||+||||||||+.+||+|++..... ......-....||++||.+.
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~~~~~~~~~~~~~~d~~gHGT~VAGiIa~~~~~~~GvAp~a~l~~~~v~~~~ 80 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNVKERTNWTNEKTLDDGLGHGTFVAGVIASSREQCLGFAPDAEIYIFRVFTNN 80 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhccccccccCCCCCCCCCCCcHHHHHHHHHccCCCceeECCCCEEEEEEeecCC
Confidence 899999999999999999999999998531100 00000111223555543332
Q ss_pred --------------------C--------------------------CCeeEEeeccCCCCCCCCCCCCCceeEeceeee
Q 037246 104 --------------------E--------------------------GNAPLVYGKLNRTGCPEFASRNPQAYISKSEAA 137 (497)
Q Consensus 104 --------------------D--------------------------Gn~p~v~a~~~~~~C~~~s~~~p~~~i~~~~v~ 137 (497)
| |...++.+||.+..+ .+..+|......++|.
T Consensus 81 ~~~~~~~~~~a~~~a~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~~~gi~vV~aaGN~g~~~--~~~~~Pa~~~~vi~Vg 158 (255)
T cd07479 81 QVSYTSWFLDAFNYAILTKIDVLNLSIGGPDFMDKPFVDKVWELTANNIIMVSAIGNDGPLY--GTLNNPADQMDVIGVG 158 (255)
T ss_pred CCchHHHHHHHHHhhhhcCCCEEEeeccCCCCCCcHHHHHHHHHHHCCcEEEEEcCCCCCCc--ccccCcccCCCceEEe
Confidence 0 113334445544211 1112344333556777
Q ss_pred ccCCCCCccccCCCCCCCC----CCCCccCcEEecCCceeeccCCCCCCCCCCCCCCCcceEEecccchhHHHHHHHhhh
Q 037246 138 NVSGAPGVPDFSSRGPNTI----IPDIVKPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHVTGAAAY 213 (497)
Q Consensus 138 ~~~~~~~~a~fSs~Gp~~~----~~~~~KPDI~APG~~I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAGiaAL 213 (497)
+.+..+.+++|||+|+..+ .++++||||+|||.+|+++.... .|..++|||||||||||++||
T Consensus 159 a~~~~~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~~i~~~~~~~-------------~~~~~sGTS~AaP~VaG~aAl 225 (255)
T cd07479 159 GIDFDDNIARFSSRGMTTWELPGGYGRVKPDIVTYGSGVYGSKLKG-------------GCRALSGTSVASPVVAGAVAL 225 (255)
T ss_pred eeccCCccccccCCCCCcccccCCCCCcCccEEecCCCeeccccCC-------------CeEEeccHHHHHHHHHHHHHH
Confidence 7888999999999996532 25778999999999999876543 588999999999999999999
Q ss_pred hhccCC----CCCHHHHHHHhhccccccC
Q 037246 214 VKSFHP----DWSPSSIKSALMTTAWSIN 238 (497)
Q Consensus 214 l~s~~p----~lsp~~ik~~L~~tA~~i~ 238 (497)
|+|++| .++|.+||++|+++|++++
T Consensus 226 l~s~~p~~~~~~~p~~vk~~L~~sA~~~~ 254 (255)
T cd07479 226 LLSTVPEKRDLINPASMKQALIESATRLP 254 (255)
T ss_pred HHHhCccccCCCCHHHHHHHHHhhcccCC
Confidence 999998 7999999999999998875
No 3
>PTZ00262 subtilisin-like protease; Provisional
Probab=99.93 E-value=1.9e-26 Score=249.48 Aligned_cols=98 Identities=22% Similarity=0.284 Sum_probs=80.2
Q ss_pred ccccCCCCCCCCCCCCccCcEEecCCceeeccCCCCCCCCCCCCCCCcceEEecccchhHHHHHHHhhhhhccCCCCCHH
Q 037246 145 VPDFSSRGPNTIIPDIVKPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHVTGAAAYVKSFHPDWSPS 224 (497)
Q Consensus 145 ~a~fSs~Gp~~~~~~~~KPDI~APG~~I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAGiaALl~s~~p~lsp~ 224 (497)
.+.+|+||.. ++||+|||++|+++++++ .|..++|||||||||||+||||++++|+++++
T Consensus 521 ~s~~Snyg~~-------~VDIaAPG~dI~St~p~g-------------~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~ 580 (639)
T PTZ00262 521 LSPNSFYSAK-------YCQLAAPGTNIYSTFPKN-------------SYRKLNGTSMAAPHVAAIASLILSINPSLSYE 580 (639)
T ss_pred ccccccCCCC-------cceEEeCCCCeeeccCCC-------------ceeecCCCchhHHHHHHHHHHHHhhCCCCCHH
Confidence 3456677632 239999999999998864 69999999999999999999999999999999
Q ss_pred HHHHHhhccccccCCCCCCCCCCcccceeeCccCCCCCCeee
Q 037246 225 SIKSALMTTAWSINATSNPGGEFAFGAGHIDPVKAISPGLVY 266 (497)
Q Consensus 225 ~ik~~L~~tA~~i~~~~~~~~~~~~G~G~vd~~~Al~~~lv~ 266 (497)
||+++|+.||.++... .....+.|+||+.+|++..+.+
T Consensus 581 qV~~iL~~TA~~l~~~----~n~~~wgG~LDa~kAV~~Ai~~ 618 (639)
T PTZ00262 581 EVIRILKESIVQLPSL----KNKVKWGGYLDIHHAVNLAIAS 618 (639)
T ss_pred HHHHHHHHhCccCCCC----CCccccCcEEcHHHHHHHHHhc
Confidence 9999999999877542 1222234899999999876654
No 4
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.93 E-value=3.4e-26 Score=233.30 Aligned_cols=107 Identities=34% Similarity=0.437 Sum_probs=92.9
Q ss_pred cccCCCCCCCCCCCCccCcEEecCCceeeccCCCCCCCCCCCCCCCcceEEecccchhHHHHHHHhhhhhccC-CCCCHH
Q 037246 146 PDFSSRGPNTIIPDIVKPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHVTGAAAYVKSFH-PDWSPS 224 (497)
Q Consensus 146 a~fSs~Gp~~~~~~~~KPDI~APG~~I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAGiaALl~s~~-p~lsp~ 224 (497)
+.||++||+. +...||||+|||++++++++... ..|..++|||||||+|||++||++|++ |.+++.
T Consensus 189 ~~~s~~g~~~--~~~~kpdv~ApG~~i~~~~~~~~-----------~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~ 255 (312)
T cd07489 189 SYFSSWGPTN--ELYLKPDVAAPGGNILSTYPLAG-----------GGYAVLSGTSMATPYVAGAAALLIQARHGKLSPA 255 (312)
T ss_pred CCccCCCCCC--CCCcCccEEcCCCCEEEeeeCCC-----------CceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHH
Confidence 8899999987 78899999999999999887652 358999999999999999999999999 999999
Q ss_pred HHHHHhhccccccCCCCC------CCCCCcccceeeCccCCCCCCee
Q 037246 225 SIKSALMTTAWSINATSN------PGGEFAFGAGHIDPVKAISPGLV 265 (497)
Q Consensus 225 ~ik~~L~~tA~~i~~~~~------~~~~~~~G~G~vd~~~Al~~~lv 265 (497)
+|+++|++||.++..... ..+..++|+|+||+.+|++..-.
T Consensus 256 ~v~~~l~~ta~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~a~~~~~~ 302 (312)
T cd07489 256 ELRDLLASTAKPLPWSDGTSALPDLAPVAQQGAGLVNAYKALYATTT 302 (312)
T ss_pred HHHHHHHHhCccccccCCCccccCCCCHhhcCcceeeHHHHhcCCcc
Confidence 999999999998754311 13557899999999999995443
No 5
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.93 E-value=5.3e-26 Score=231.50 Aligned_cols=72 Identities=60% Similarity=0.985 Sum_probs=61.2
Q ss_pred ccCcEEecCCceeeccCCCCCCCCCCCCCCCcceEEecccchhHHHHHHHhhhhhccCCCCCHHHHHHHhhcccc
Q 037246 161 VKPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHVTGAAAYVKSFHPDWSPSSIKSALMTTAW 235 (497)
Q Consensus 161 ~KPDI~APG~~I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAGiaALl~s~~p~lsp~~ik~~L~~tA~ 235 (497)
.||||+|||.+|+++++... ..........|..++|||||||+|||++|||+|++|.++|.|||++|++||.
T Consensus 236 ~~~di~apG~~i~~~~~~~~---~~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 236 LKPDIAAPGVDILAAWTPEG---ADPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTAY 307 (307)
T ss_pred CccceeeccCceeecccCcc---ccccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 79999999999999987531 1111223457999999999999999999999999999999999999999984
No 6
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.93 E-value=4.4e-26 Score=232.63 Aligned_cols=88 Identities=30% Similarity=0.355 Sum_probs=73.5
Q ss_pred CCCccccCCCCCCCCCCCCccCcEEecCCceeeccCCCCCCCCCCCCCCCcceEEecccchhHHHHHHHhhhhhccCC--
Q 037246 142 APGVPDFSSRGPNTIIPDIVKPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHVTGAAAYVKSFHP-- 219 (497)
Q Consensus 142 ~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAGiaALl~s~~p-- 219 (497)
.+.+++||||||.. ++++||||+|||++|+++.+....... ......|..++|||||||||||++|||+|++|
T Consensus 218 ~~~~~~fSs~Gp~~--~g~~kPdv~ApG~~i~s~~~~~~~~~~---~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~ 292 (311)
T cd07497 218 SGDVVSWSSRGPSI--AGDPKPDLAAIGAFAWAPGRVLDSGGA---LDGNEAFDLFGGTSMATPMTAGSAALVISALKEK 292 (311)
T ss_pred CCCccccccCCCCc--ccCCCCceeccCcceEeecccCCCCcc---cCCCcceeeecchhhhhHHHHHHHHHHHHHhhhh
Confidence 46789999999988 899999999999999998765421000 11124699999999999999999999999876
Q ss_pred ----CCCHHHHHHHhhccc
Q 037246 220 ----DWSPSSIKSALMTTA 234 (497)
Q Consensus 220 ----~lsp~~ik~~L~~tA 234 (497)
.++|++||++|++||
T Consensus 293 ~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 293 EGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred cCCCCCCHHHHHHHHHhcC
Confidence 589999999999987
No 7
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=99.93 E-value=6.4e-26 Score=234.17 Aligned_cols=106 Identities=39% Similarity=0.469 Sum_probs=89.7
Q ss_pred CCCCccccCCCCCCCCCCCCccCcEEecCCceeeccCCCCCCCCCCCCCCCcceEEecccchhHHHHHHHhhhhhcc---
Q 037246 141 GAPGVPDFSSRGPNTIIPDIVKPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHVTGAAAYVKSF--- 217 (497)
Q Consensus 141 ~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAGiaALl~s~--- 217 (497)
..+.+++||+|||.. ...+||||+|||.+|+++...+ .|..++|||||||+|||++|||+|+
T Consensus 230 ~~~~~~~~S~~G~~~--~~~~~pdi~apG~~i~s~~~~~-------------~~~~~~GTS~AaP~VaG~aALl~~~~~~ 294 (346)
T cd07475 230 NGGQMSGFSSWGPTP--DLDLKPDITAPGGNIYSTVNDN-------------TYGYMSGTSMASPHVAGASALVKQRLKE 294 (346)
T ss_pred CCCccCCCcCCCCCc--ccCcCCeEEeCCCCeEEecCCC-------------ceEeeCcHHHHHHHHHHHHHHHHHHHHh
Confidence 678899999999987 8899999999999999987653 6899999999999999999999998
Q ss_pred -CCCCCHHH----HHHHhhccccccCCC---CCCCCCCcccceeeCccCCCC
Q 037246 218 -HPDWSPSS----IKSALMTTAWSINAT---SNPGGEFAFGAGHIDPVKAIS 261 (497)
Q Consensus 218 -~p~lsp~~----ik~~L~~tA~~i~~~---~~~~~~~~~G~G~vd~~~Al~ 261 (497)
+|.+++.+ ||++|++||.+.... .....+.++|+|+||+.+|++
T Consensus 295 ~~p~l~~~~~~~~ik~~l~~ta~~~~~~~~~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 295 KYPKLSGEELVDLVKNLLMNTATPPLDSEDTKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred hCCCCCHHHHHHHHHHHHHhcCCcccccCCCCccCCccccCcchhcHHHhhC
Confidence 78899887 778888999853222 123356788999999999985
No 8
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=99.92 E-value=4.4e-25 Score=220.83 Aligned_cols=167 Identities=22% Similarity=0.183 Sum_probs=124.2
Q ss_pred CccCCCCCCCeEEEEeeceecCCCCCCCCCCCCCCCCCC----ceeecCCcccccCCC----C-----------------
Q 037246 50 VKRNPSVESDIVIGVLDSGIWPELESFNDEGLSDPPKKW----KGVCEGGKNFTCNSF----E----------------- 104 (497)
Q Consensus 50 ~w~~~~~G~gV~VaVlDTGI~~~Hp~f~~~~~~~~~~~~----~g~~~~G~~~~c~~~----D----------------- 104 (497)
+|.++.+|+||+|||||+||+.+||+|+++.+......| ......||++++.+- +
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~~~~~~~~~~~~~~~~gHGT~VAgii~g~~~~~~~GvAp~a~i~~~~ 81 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTPLFTYAAAACQDGGASAHGTHVASLIFGQPCSSVEGIAPLCRGLNIP 81 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCccccccCccccCCCCCCCCCcHHHHHHHHhcCCCCCceeECcCCeEEEEE
Confidence 699999999999999999999999999986543332222 112234566532221 0
Q ss_pred --------------------------------------------------------CCeeEEeeccCCCCCCCCCCCCCc
Q 037246 105 --------------------------------------------------------GNAPLVYGKLNRTGCPEFASRNPQ 128 (497)
Q Consensus 105 --------------------------------------------------------Gn~p~v~a~~~~~~C~~~s~~~p~ 128 (497)
|...+++++|.+..|. ..|
T Consensus 82 v~~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G~~~~~~~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~----~~P- 156 (267)
T cd07476 82 IFAEDRRGCSQLDLARAINLALEQGAHIINISGGRLTQTGEADPILANAVAMCQQNNVLIVAAAGNEGCACL----HVP- 156 (267)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHCCCCEEEecCCcCCCCCCCCHHHHHHHHHHHHCCCEEEEecCCCCCCCC----CCc-
Confidence 1133444555442221 112
Q ss_pred eeE-eceeeeccCCCCCccccCCCCCCCCCCCCccCcEEecCCceeeccCCCCCCCCCCCCCCCcceEEecccchhHHHH
Q 037246 129 AYI-SKSEAANVSGAPGVPDFSSRGPNTIIPDIVKPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHV 207 (497)
Q Consensus 129 ~~i-~~~~v~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~V 207 (497)
+.. ..++|.+.+..+.++.||++|+.. .||||+|||.+|+++.+.+ .|..++|||||||||
T Consensus 157 a~~~~vi~Vga~~~~~~~~~~s~~g~~~-----~~~~l~ApG~~i~~~~~~~-------------~~~~~sGTS~AaP~v 218 (267)
T cd07476 157 AALPSVLAVGAMDDDGLPLKFSNWGADY-----RKKGILAPGENILGAALGG-------------EVVRRSGTSFAAAIV 218 (267)
T ss_pred ccCCceEEEEeecCCCCeeeecCCCCCC-----CCceEEecCCCceeecCCC-------------CeEEeccHHHHHHHH
Confidence 222 345666788888999999999865 3789999999999988764 599999999999999
Q ss_pred HHHhhhhhccCCC----CCHHHHHHHhhccccccCC
Q 037246 208 TGAAAYVKSFHPD----WSPSSIKSALMTTAWSINA 239 (497)
Q Consensus 208 AGiaALl~s~~p~----lsp~~ik~~L~~tA~~i~~ 239 (497)
||++|||+|++|. ++|++||++|++||.++..
T Consensus 219 aG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~ 254 (267)
T cd07476 219 AGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDP 254 (267)
T ss_pred HHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCC
Confidence 9999999999886 9999999999999998865
No 9
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.91 E-value=3.3e-24 Score=216.26 Aligned_cols=107 Identities=45% Similarity=0.645 Sum_probs=89.0
Q ss_pred CCCCccccCCCCCCCCCCCCccCcEEecCCceeeccCCCCCCCCCCCCCCCcceEEecccchhHHHHHHHhhhhhccCCC
Q 037246 141 GAPGVPDFSSRGPNTIIPDIVKPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHVTGAAAYVKSFHPD 220 (497)
Q Consensus 141 ~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAGiaALl~s~~p~ 220 (497)
.......|+++|+.. ....+||||+|||.+|.+++... ...|..++|||||||+|||++|||+|++|.
T Consensus 188 ~~~~~~~~~s~~~~~-~~~~~kpdv~apG~~i~~~~~~~-----------~~~~~~~~GTS~AaP~vaG~aAll~~~~p~ 255 (295)
T cd07474 188 EADTVGPSSSRGPPT-SDSAIKPDIVAPGVDIMSTAPGS-----------GTGYARMSGTSMAAPHVAGAAALLKQAHPD 255 (295)
T ss_pred CCCceeccCCCCCCC-CCCCcCCCEECCcCceEeeccCC-----------CCceEEeccHHHHHHHHHHHHHHHHhhCCC
Confidence 455666677766543 37889999999999999998763 136899999999999999999999999999
Q ss_pred CCHHHHHHHhhccccccCCCCC-CCCCCcccceeeCccCC
Q 037246 221 WSPSSIKSALMTTAWSINATSN-PGGEFAFGAGHIDPVKA 259 (497)
Q Consensus 221 lsp~~ik~~L~~tA~~i~~~~~-~~~~~~~G~G~vd~~~A 259 (497)
|++++||++|++||.++..... ..+...+|+|+||+.+|
T Consensus 256 l~~~~v~~~L~~tA~~~~~~~~~~~~~~~~G~G~l~~~~A 295 (295)
T cd07474 256 WSPAQIKAALMNTAKPLYDSDGVVYPVSRQGAGRVDALRA 295 (295)
T ss_pred CCHHHHHHHHHhhCcccccCCCCcCChhccCcceeccccC
Confidence 9999999999999998765422 22457899999999987
No 10
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=99.91 E-value=5e-24 Score=212.42 Aligned_cols=89 Identities=38% Similarity=0.492 Sum_probs=82.0
Q ss_pred eceeeeccCCCCCccccCCCCCCCCCCCCccCcEEecCCceeeccCCCCCCCCCCCCCCCcceEEecccchhHHHHHHHh
Q 037246 132 SKSEAANVSGAPGVPDFSSRGPNTIIPDIVKPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHVTGAA 211 (497)
Q Consensus 132 ~~~~v~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAGia 211 (497)
...+|.+++..+.++.||++||.. .+.+||||+|||.+|.++.+.+ .|..++|||||||+|||++
T Consensus 174 ~vi~Vga~~~~~~~~~~S~~g~~~--~~~~~~dv~ApG~~i~s~~~~~-------------~~~~~~GTS~AaP~vaG~a 238 (264)
T cd07481 174 ESFAVGATDRNDVLADFSSRGPST--YGRIKPDISAPGVNIRSAVPGG-------------GYGSSSGTSMAAPHVAGVA 238 (264)
T ss_pred ceEEEEecCCCCCCccccCCCCCC--CCCcCceEEECCCCeEEecCCC-------------ceEeeCcHHHHHHHHHHHH
Confidence 555677789999999999999987 6899999999999999998764 5899999999999999999
Q ss_pred hhhhccCCC--CCHHHHHHHhhcccc
Q 037246 212 AYVKSFHPD--WSPSSIKSALMTTAW 235 (497)
Q Consensus 212 ALl~s~~p~--lsp~~ik~~L~~tA~ 235 (497)
|||+|++|. ++++||+++|++||+
T Consensus 239 All~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 239 ALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 999999999 999999999999984
No 11
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.91 E-value=3.7e-24 Score=210.75 Aligned_cols=96 Identities=29% Similarity=0.444 Sum_probs=85.0
Q ss_pred eceeeeccCCCCCccccCCCCCCCCCCCCccCcEEecCCceeeccCCCCCCCCCCCCCCCcceEEecccchhHHHHHHHh
Q 037246 132 SKSEAANVSGAPGVPDFSSRGPNTIIPDIVKPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHVTGAA 211 (497)
Q Consensus 132 ~~~~v~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAGia 211 (497)
..+.|.+++..+.+++|||+|+.+ ||+|||.+|+++.+.+ .|..++|||||||||||++
T Consensus 144 ~vi~V~a~~~~~~~~~~s~~g~~~--------di~ApG~~i~~~~~~~-------------~~~~~sGTS~AaP~vaG~a 202 (239)
T cd05561 144 GVIAVTAVDARGRLYREANRGAHV--------DFAAPGVDVWVAAPGG-------------GYRYVSGTSFAAPFVTAAL 202 (239)
T ss_pred CceEEEeecCCCCccccCCCCCcc--------eEEccccceecccCCC-------------CEEEeCCHHHHHHHHHHHH
Confidence 445677788899999999999987 9999999999976653 6999999999999999999
Q ss_pred hhhhccCCCCCHHHHHHHhhccccccCCCCCCCCCCcccce
Q 037246 212 AYVKSFHPDWSPSSIKSALMTTAWSINATSNPGGEFAFGAG 252 (497)
Q Consensus 212 ALl~s~~p~lsp~~ik~~L~~tA~~i~~~~~~~~~~~~G~G 252 (497)
||++|++| ++++||+++|++||+++.. +.++..||||
T Consensus 203 All~~~~p-~~~~~i~~~L~~ta~~~g~---~~~d~~~G~G 239 (239)
T cd05561 203 ALLLQASP-LAPDDARARLAATAKDLGP---PGRDPVFGYG 239 (239)
T ss_pred HHHHhcCC-CCHHHHHHHHHHHhhccCC---CCcCCCcCCC
Confidence 99999999 9999999999999988754 3567789987
No 12
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=99.90 E-value=7.6e-24 Score=226.56 Aligned_cols=102 Identities=32% Similarity=0.426 Sum_probs=87.5
Q ss_pred eeeeccCCC-CCccccCCCCCCCCCCCCccCcEEecCCceeeccCCCCCCCCCCCCCCCcceEEecccchhHHHHHHHhh
Q 037246 134 SEAANVSGA-PGVPDFSSRGPNTIIPDIVKPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHVTGAAA 212 (497)
Q Consensus 134 ~~v~~~~~~-~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAGiaA 212 (497)
++|.+.+.. +.++.|||+||+. ++++||||+|||++|+++.+.+ .|..++|||||||||||++|
T Consensus 347 itVga~~~~~~~~~~~Ss~G~~~--~~~~kpdi~APG~~i~s~~~~~-------------~~~~~sGTS~Aap~vaG~aA 411 (455)
T cd07478 347 ITVGAYNQNNNSIAIFSGRGPTR--DGRIKPDIAAPGVNILTASPGG-------------GYTTRSGTSVAAAIVAGACA 411 (455)
T ss_pred EEEEEEeCCCCcccCccCCCcCC--CCCcCceEEecCCCEEEeecCC-------------cEEeeCcHHHHHHHHHHHHH
Confidence 355555543 4699999999987 8999999999999999998864 69999999999999999999
Q ss_pred hhhccC------CCCCHHHHHHHhhccccccCCCCCCCCCCcccce
Q 037246 213 YVKSFH------PDWSPSSIKSALMTTAWSINATSNPGGEFAFGAG 252 (497)
Q Consensus 213 Ll~s~~------p~lsp~~ik~~L~~tA~~i~~~~~~~~~~~~G~G 252 (497)
||+|++ |.+++++||++|+.+|+++... ..++.++|||
T Consensus 412 Ll~~~~~~~~~~p~~~~~~ik~~L~~tA~~~~~~--~~pn~~~GyG 455 (455)
T cd07478 412 LLLQWGIVRGNDPYLYGEKIKTYLIRGARRRPGD--EYPNPEWGYG 455 (455)
T ss_pred HHHHhchhccCCCCCCHHHHHHHHHHhCccCCCC--CCCCCCCCCC
Confidence 999875 5679999999999999988642 4467889987
No 13
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=4.1e-24 Score=218.39 Aligned_cols=195 Identities=25% Similarity=0.290 Sum_probs=143.5
Q ss_pred ccCCCCeEEEEcCccccc--------cccCCCCcCCCcc------cCc----cCCCCCCCeEEEEeeceecCCCCCCCCC
Q 037246 18 ERGMDGVVSVFPRKMLQL--------QTTRSWDFMGFAE------TVK----RNPSVESDIVIGVLDSGIWPELESFNDE 79 (497)
Q Consensus 18 l~~~p~V~~v~pd~~~~~--------~tt~s~~~~gl~~------~~w----~~~~~G~gV~VaVlDTGI~~~Hp~f~~~ 79 (497)
++++|-+..|+++..+.. |.-..|....+.. ..| .....|+||..||+||||+.+||||+++
T Consensus 161 i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~~~aG~gvtaYv~DTGVni~H~dFegR 240 (501)
T KOG1153|consen 161 IRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYEIDAGKGVTAYVLDTGVNIEHPDFEGR 240 (501)
T ss_pred eccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEeecccCCCeEEEEecccccccccccccc
Confidence 488999999999887754 3334454443332 122 2345799999999999999999999999
Q ss_pred CCCC--CCCCCceeecCCcccccCCC----------------------C-------------------------------
Q 037246 80 GLSD--PPKKWKGVCEGGKNFTCNSF----------------------E------------------------------- 104 (497)
Q Consensus 80 ~~~~--~~~~~~g~~~~G~~~~c~~~----------------------D------------------------------- 104 (497)
.+.. .|..-.-.+.+||++||++- |
T Consensus 241 a~wGa~i~~~~~~~D~nGHGTH~AG~I~sKt~GvAK~s~lvaVKVl~~dGsGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv 320 (501)
T KOG1153|consen 241 AIWGATIPPKDGDEDCNGHGTHVAGLIGSKTFGVAKNSNLVAVKVLRSDGSGTVSDVIKGVEFVVKHHEKKKKKEGKKSV 320 (501)
T ss_pred eecccccCCCCcccccCCCcceeeeeeeccccccccccceEEEEEeccCCcEeHHHHHhHHHHHHHHhhhhhcccCCCeE
Confidence 6522 11111223457899999884 1
Q ss_pred -----------------------CCeeEEeeccCCC-CCCCCCCCCCceeEeceeeeccCCCCCccccCCCCCCCCCCCC
Q 037246 105 -----------------------GNAPLVYGKLNRT-GCPEFASRNPQAYISKSEAANVSGAPGVPDFSSRGPNTIIPDI 160 (497)
Q Consensus 105 -----------------------Gn~p~v~a~~~~~-~C~~~s~~~p~~~i~~~~v~~~~~~~~~a~fSs~Gp~~~~~~~ 160 (497)
|..-+++|||... +|. .+|..+-..++|++.+..+++|.|||||+|+
T Consensus 321 ~NlSlGg~~S~aLn~AV~~A~~~Gi~fa~AAGNe~eDAC~----~SPass~~aITVGAst~~D~iA~FSN~G~CV----- 391 (501)
T KOG1153|consen 321 ANLSLGGFRSAALNMAVNAASERGIHFAVAAGNEHEDACN----SSPASSKKAITVGASTKNDTIAFFSNWGKCV----- 391 (501)
T ss_pred EEEecCCcccHHHHHHHHHHhhcCeEEEEcCCCcchhhhc----cCcccccccEEecccccccchhhhcCcccee-----
Confidence 2233445555543 885 3344444667888899999999999999999
Q ss_pred ccCcEEecCCceeeccCCCCCCCCCCCCCCCcceEEecccchhHHHHHHHhhhhhccCCC---------CCHHHHHHHhh
Q 037246 161 VKPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHVTGAAAYVKSFHPD---------WSPSSIKSALM 231 (497)
Q Consensus 161 ~KPDI~APG~~I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAGiaALl~s~~p~---------lsp~~ik~~L~ 231 (497)
||.|||++|+|+|.+.. ....+.||||||+|||||++|..++.+|. .+|.++|..+.
T Consensus 392 ---diFAPGv~IlSs~iGs~-----------~at~ilSGTSMasPhvaG~aAy~ls~~~~~~~~f~n~~~s~~~lk~~~l 457 (501)
T KOG1153|consen 392 ---DIFAPGVNILSSWIGSN-----------NATAILSGTSMASPHVAGLAAYFLSLGPLPDSSFANDAGSPSELKKRLL 457 (501)
T ss_pred ---eeecCchhhhhhhhcCc-----------cchheeecccccCcchhhhHHHhhhcCCCChHHhhhccCChHHhhhhhh
Confidence 99999999999999873 35679999999999999999999999883 37888888776
Q ss_pred cccc
Q 037246 232 TTAW 235 (497)
Q Consensus 232 ~tA~ 235 (497)
.-..
T Consensus 458 ~~~~ 461 (501)
T KOG1153|consen 458 KFKT 461 (501)
T ss_pred cccc
Confidence 6543
No 14
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.89 E-value=5.3e-23 Score=206.91 Aligned_cols=89 Identities=22% Similarity=0.209 Sum_probs=69.0
Q ss_pred eeeccCCC-C-CccccCCCCCCCCCCCCccCcEEecCCceeeccCCCCCCCCCCCCCCCcceEEecccchhHHHHHHHhh
Q 037246 135 EAANVSGA-P-GVPDFSSRGPNTIIPDIVKPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHVTGAAA 212 (497)
Q Consensus 135 ~v~~~~~~-~-~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAGiaA 212 (497)
+|.+++.. + .++.|||||+.+ ||+|||++|+++.+..... ..+.....|..++|||||||||||++|
T Consensus 181 ~VgA~~~~~~~~~~~fSn~G~~v--------di~APG~~i~s~~~~~~~~---~~~~~~~~~~~~sGTS~AaP~VaG~aA 249 (277)
T cd04843 181 MVGAGSSTTGHTRLAFSNYGSRV--------DVYGWGENVTTTGYGDLQD---LGGENQDYTDSFSGTSSASPIVAGAAA 249 (277)
T ss_pred EEEeccCCCCCccccccCCCCcc--------ceEcCCCCeEecCCCCccc---ccCCCCcceeeecccchhhHHHHHHHH
Confidence 45555543 2 389999999988 9999999999998764311 001111235789999999999999999
Q ss_pred hhhc----c-CCCCCHHHHHHHhhccc
Q 037246 213 YVKS----F-HPDWSPSSIKSALMTTA 234 (497)
Q Consensus 213 Ll~s----~-~p~lsp~~ik~~L~~tA 234 (497)
||++ + +|+|+++|||++|+.|+
T Consensus 250 Ll~s~~~~~~~p~lt~~~v~~~L~~t~ 276 (277)
T cd04843 250 SIQGIAKQKGGTPLTPIEMRELLTATG 276 (277)
T ss_pred HHHHHHhhcCCCCCCHHHHHHHHHhcC
Confidence 9974 4 49999999999999987
No 15
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=99.89 E-value=3e-23 Score=205.39 Aligned_cols=164 Identities=27% Similarity=0.347 Sum_probs=118.3
Q ss_pred CccCCCCCCCeEEEEeeceecCCCCCCCCCCCCCCCCCCc--eeecCCcccccCCC----------------------C-
Q 037246 50 VKRNPSVESDIVIGVLDSGIWPELESFNDEGLSDPPKKWK--GVCEGGKNFTCNSF----------------------E- 104 (497)
Q Consensus 50 ~w~~~~~G~gV~VaVlDTGI~~~Hp~f~~~~~~~~~~~~~--g~~~~G~~~~c~~~----------------------D- 104 (497)
.|..+.+|+||+||||||||+.+||+|.++.......... .....+|+++|.+. +
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~~~~~~~~~~~~~~~d~~~HGT~vAgiia~~~~GvAp~a~i~~~~i~~~~~ 96 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGRAIWGADFVGGDPDSDCNGHGTHVAGTVGGKTYGVAKKANLVAVKVLDCNG 96 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCCeeeeeecCCCCCCCCCCccHHHHHHHHHccccCcCCCCeEEEEEEeCCCC
Confidence 6778899999999999999999999998764211110000 12233455432221 0
Q ss_pred -------------------------------------------------CCeeEEeeccCCC-CCCCCCCCCCceeEece
Q 037246 105 -------------------------------------------------GNAPLVYGKLNRT-GCPEFASRNPQAYISKS 134 (497)
Q Consensus 105 -------------------------------------------------Gn~p~v~a~~~~~-~C~~~s~~~p~~~i~~~ 134 (497)
|..-++.++|.+. .| ...|.......
T Consensus 97 ~~~~~~~~~ai~~~~~~~~~~~~~~iin~S~g~~~~~~~~~~~~~~~~~g~liV~aaGN~g~~~~----~~~pa~~~~vi 172 (255)
T cd04077 97 SGTLSGIIAGLEWVANDATKRGKPAVANMSLGGGASTALDAAVAAAVNAGVVVVVAAGNSNQDAC----NYSPASAPEAI 172 (255)
T ss_pred CcCHHHHHHHHHHHHhcccccCCCeEEEeCCCCCCCHHHHHHHHHHHHCCCEEEEeCCCCCCCCC----CcCccCCCceE
Confidence 1133334444331 11 12232222455
Q ss_pred eeeccCCCCCccccCCCCCCCCCCCCccCcEEecCCceeeccCCCCCCCCCCCCCCCcceEEecccchhHHHHHHHhhhh
Q 037246 135 EAANVSGAPGVPDFSSRGPNTIIPDIVKPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHVTGAAAYV 214 (497)
Q Consensus 135 ~v~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAGiaALl 214 (497)
+|.+.+..+.+++||++|+.+ ||+|||.+|.++.... ...|..++|||||||+|||++|||
T Consensus 173 ~Vga~~~~~~~~~~S~~g~~~--------~i~apG~~i~~~~~~~-----------~~~~~~~~GTS~Aap~vaG~~All 233 (255)
T cd04077 173 TVGATDSDDARASFSNYGSCV--------DIFAPGVDILSAWIGS-----------DTATATLSGTSMAAPHVAGLAAYL 233 (255)
T ss_pred EEeccCCCCCccCcccCCCCC--------cEEeCCCCeEecccCC-----------CCcEEeeCcHHHHHHHHHHHHHHH
Confidence 677788899999999999988 9999999999987642 146999999999999999999999
Q ss_pred hccCCCCCHHHHHHHhhccccc
Q 037246 215 KSFHPDWSPSSIKSALMTTAWS 236 (497)
Q Consensus 215 ~s~~p~lsp~~ik~~L~~tA~~ 236 (497)
+|++|+++++|||++|++||++
T Consensus 234 ~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 234 LSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred HhhCCCCCHHHHHHHHHhhccC
Confidence 9999999999999999999964
No 16
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.89 E-value=7.1e-23 Score=203.66 Aligned_cols=89 Identities=28% Similarity=0.424 Sum_probs=79.9
Q ss_pred eceeeeccCCCCCccccCCCCCCCCCCCCccCcEEecCCceeeccCCCCCCCCCCCCCCCcceEEecccchhHHHHHHHh
Q 037246 132 SKSEAANVSGAPGVPDFSSRGPNTIIPDIVKPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHVTGAA 211 (497)
Q Consensus 132 ~~~~v~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAGia 211 (497)
..+.|.+.+..+.++.||++||.. ++++||||+|||.++.+.... ..|..++|||||||||||++
T Consensus 173 ~vi~Vga~~~~~~~~~~S~~G~~~--~~~~~pdi~a~G~~~~~~~~~-------------~~~~~~sGTS~AaP~vaG~a 237 (261)
T cd07493 173 NVLSVGAVDANGNKASFSSIGPTA--DGRLKPDVMALGTGIYVINGD-------------GNITYANGTSFSCPLIAGLI 237 (261)
T ss_pred ceEEEEEeccCCCCCccCCcCCCC--CCCcCCceEecCCCeEEEcCC-------------CcEEeeCcHHHHHHHHHHHH
Confidence 455677788888999999999987 889999999999999985433 36899999999999999999
Q ss_pred hhhhccCCCCCHHHHHHHhhcccc
Q 037246 212 AYVKSFHPDWSPSSIKSALMTTAW 235 (497)
Q Consensus 212 ALl~s~~p~lsp~~ik~~L~~tA~ 235 (497)
|||+|++|+|++.|||++|++||+
T Consensus 238 All~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 238 ACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred HHHHHHCCCCCHHHHHHHHHHhcC
Confidence 999999999999999999999984
No 17
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=99.89 E-value=6.9e-23 Score=203.29 Aligned_cols=172 Identities=24% Similarity=0.310 Sum_probs=123.7
Q ss_pred CCCCcCCCcc-cCccCCCCCCCeEEEEeeceecCCCCCCCCCCCCC----CCCCCceeecCCcccccCCC----------
Q 037246 39 RSWDFMGFAE-TVKRNPSVESDIVIGVLDSGIWPELESFNDEGLSD----PPKKWKGVCEGGKNFTCNSF---------- 103 (497)
Q Consensus 39 ~s~~~~gl~~-~~w~~~~~G~gV~VaVlDTGI~~~Hp~f~~~~~~~----~~~~~~g~~~~G~~~~c~~~---------- 103 (497)
++|.+..+.. .+|.++ +|+||+|+|||+||+++||+|....+.. ...........||+++|.+-
T Consensus 9 ~~w~~~~~~~~~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~~~~~~~~~~~~~~~~~d~~~HGT~vagii~~~~~~~~~ 87 (260)
T cd07484 9 YQWNLDQIGAPKAWDIT-GGSGVTVAVVDTGVDPTHPDLLKVKFVLGYDFVDNDSDAMDDNGHGTHVAGIIAAATNNGTG 87 (260)
T ss_pred cCCCccccChHHHHhhc-CCCCCEEEEEeCCCCCCCcccccCCcccceeccCCCCCCCCCCCcHHHHHHHHhCccCCCCc
Confidence 5676665554 899988 8999999999999999999985432211 11111112223444432210
Q ss_pred ----------------C------------------------------------------------CCeeEEeeccCCCCC
Q 037246 104 ----------------E------------------------------------------------GNAPLVYGKLNRTGC 119 (497)
Q Consensus 104 ----------------D------------------------------------------------Gn~p~v~a~~~~~~C 119 (497)
| |..-+++++|.+..
T Consensus 88 ~~Giap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iin~S~g~~~~~~~~~~~~~~a~~~gilvV~aaGN~g~~- 166 (260)
T cd07484 88 VAGVAPKAKIMPVKVLDANGSGSLADIANGIRYAADKGAKVINLSLGGGLGSTALQEAINYAWNKGVVVVAAAGNEGVS- 166 (260)
T ss_pred eEeECCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCeEEEecCCCCCCCHHHHHHHHHHHHCCCEEEEeCCCCCCC-
Confidence 0 22444455554421
Q ss_pred CCCCCCCCceeEeceeeeccCCCCCccccCCCCCCCCCCCCccCcEEecCCceeeccCCCCCCCCCCCCCCCcceEEecc
Q 037246 120 PEFASRNPQAYISKSEAANVSGAPGVPDFSSRGPNTIIPDIVKPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSG 199 (497)
Q Consensus 120 ~~~s~~~p~~~i~~~~v~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~s~~~~~~~~~~~~~~~~~~~y~~~sG 199 (497)
....|........|.+.+..+..+.||++|+.. |++|||.++.+..+.+ .|..++|
T Consensus 167 ---~~~~pa~~~~vi~Vga~~~~~~~~~~s~~g~~~--------~~~apG~~i~~~~~~~-------------~~~~~~G 222 (260)
T cd07484 167 ---SVSYPAAYPGAIAVAATDQDDKRASFSNYGKWV--------DVSAPGGGILSTTPDG-------------DYAYMSG 222 (260)
T ss_pred ---CCCCCCCCCCeEEEEeeCCCCCcCCcCCCCCCc--------eEEeCCCCcEeecCCC-------------CEEEeee
Confidence 012232222455677788899999999999887 9999999999887653 6999999
Q ss_pred cchhHHHHHHHhhhhhccCCCCCHHHHHHHhhcccccc
Q 037246 200 TSVACSHVTGAAAYVKSFHPDWSPSSIKSALMTTAWSI 237 (497)
Q Consensus 200 TSmAaP~VAGiaALl~s~~p~lsp~~ik~~L~~tA~~i 237 (497)
||||||+|||++||+++++| +++++||++|+.||+++
T Consensus 223 TS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 223 TSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred HHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 99999999999999999999 99999999999999875
No 18
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=99.89 E-value=7.1e-23 Score=206.92 Aligned_cols=85 Identities=21% Similarity=0.164 Sum_probs=72.5
Q ss_pred ceeeeccCCCCCccccCCCCCCCCCCCCccCcEEecCCc-------eeeccCCCCCCCCCCCCCCCcceEEecccchhHH
Q 037246 133 KSEAANVSGAPGVPDFSSRGPNTIIPDIVKPDISAPGVE-------ILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACS 205 (497)
Q Consensus 133 ~~~v~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~-------I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP 205 (497)
.+.|.+++..+.++.||++|+.. +++|||.. |.++.... ....|..++|||||||
T Consensus 206 vi~Vga~~~~g~~~~~s~~g~~~--------~~~a~g~~~~~~~~~i~~~~~~~----------~~~~~~~~sGTS~AaP 267 (297)
T cd04059 206 TISVSAVTANGVRASYSEVGSSV--------LASAPSGGSGNPEASIVTTDLGG----------NCNCTSSHNGTSAAAP 267 (297)
T ss_pred eEEEEeeCCCCCCcCCCCCCCcE--------EEEecCCCCCCCCCceEeCCCCC----------CCCcccccCCcchhhh
Confidence 44566688899999999999988 99999988 65554431 0135788999999999
Q ss_pred HHHHHhhhhhccCCCCCHHHHHHHhhcccc
Q 037246 206 HVTGAAAYVKSFHPDWSPSSIKSALMTTAW 235 (497)
Q Consensus 206 ~VAGiaALl~s~~p~lsp~~ik~~L~~tA~ 235 (497)
+|||++|||+|++|++++.|||++|++||+
T Consensus 268 ~VAG~aAll~~~~p~lt~~~v~~~L~~TA~ 297 (297)
T cd04059 268 LAAGVIALMLEANPNLTWRDVQHILALTAR 297 (297)
T ss_pred hhHhHHHHhhccCCCCCHHHHHHHHHHhcC
Confidence 999999999999999999999999999984
No 19
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=99.89 E-value=6.8e-23 Score=205.20 Aligned_cols=87 Identities=36% Similarity=0.483 Sum_probs=74.8
Q ss_pred eceeeeccCCCCCccccCCCCCCCCCCCCccCcEEecCC-ceeeccCCCCCCCCCCCCCCCcceEEecccchhHHHHHHH
Q 037246 132 SKSEAANVSGAPGVPDFSSRGPNTIIPDIVKPDISAPGV-EILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHVTGA 210 (497)
Q Consensus 132 ~~~~v~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~-~I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAGi 210 (497)
..+.|.+.+..+.++.||++|+.. ||+|||. .|+++.+.... .....|..++|||||||+|||+
T Consensus 185 ~vi~V~a~~~~~~~~~~S~~g~~~--------~i~apG~~~i~~~~~~~~~-------~~~~~~~~~sGTS~AaP~VaG~ 249 (273)
T cd07485 185 GVIAVAALDTNDNKASFSNYGRWV--------DIAAPGVGTILSTVPKLDG-------DGGGNYEYLSGTSMAAPHVSGV 249 (273)
T ss_pred CeEEEEeccCCCCcCccccCCCce--------EEEeCCCCccccccccccC-------CCCCCeEeeccHHHHHHHHHHH
Confidence 455677788899999999999988 9999999 88888765311 1124699999999999999999
Q ss_pred hhhhhccCCC-CCHHHHHHHhhcc
Q 037246 211 AAYVKSFHPD-WSPSSIKSALMTT 233 (497)
Q Consensus 211 aALl~s~~p~-lsp~~ik~~L~~t 233 (497)
+|||+|++|. ++++|||++|++|
T Consensus 250 aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 250 AALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhC
Confidence 9999999999 9999999999876
No 20
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=5.2e-22 Score=208.12 Aligned_cols=194 Identities=22% Similarity=0.265 Sum_probs=144.7
Q ss_pred cCccCCCCCCCeEEEEeeceecCCCCCCCCCCC-------CC-CCCCCceeecCCccc---ccCCC--------------
Q 037246 49 TVKRNPSVESDIVIGVLDSGIWPELESFNDEGL-------SD-PPKKWKGVCEGGKNF---TCNSF-------------- 103 (497)
Q Consensus 49 ~~w~~~~~G~gV~VaVlDTGI~~~Hp~f~~~~~-------~~-~~~~~~g~~~~G~~~---~c~~~-------------- 103 (497)
-+|..+++|++|+|||+|||+..+||+|..-.- .. ...--+|+++.|... .|.+-
T Consensus 192 ~LWk~GyTGa~VkvAiFDTGl~~~HPHFrnvKERTNWTNE~tLdD~lgHGTFVAGvia~~~ec~gfa~d~e~~~frvft~ 271 (1033)
T KOG4266|consen 192 HLWKKGYTGAKVKVAIFDTGLRADHPHFRNVKERTNWTNEDTLDDNLGHGTFVAGVIAGRNECLGFASDTEIYAFRVFTD 271 (1033)
T ss_pred hHHhccccCCceEEEEeecccccCCccccchhhhcCCcCccccccCcccceeEeeeeccchhhcccCCccceeEEEeecc
Confidence 599999999999999999999999999984210 00 111235666655221 34432
Q ss_pred ----------C------------------------------------CC-eeEEeeccCCCCCCCCCCCCCceeEeceee
Q 037246 104 ----------E------------------------------------GN-APLVYGKLNRTGCPEFASRNPQAYISKSEA 136 (497)
Q Consensus 104 ----------D------------------------------------Gn-~p~v~a~~~~~~C~~~s~~~p~~~i~~~~v 136 (497)
| .| .-+.+.||.|.+- ....||......+.|
T Consensus 272 ~qVSYTSWFLDAFNYAI~~kidvLNLSIGGPDfmD~PFVeKVwEltAnNvIMvSAiGNDGPLY--GTLNNPaDQsDViGV 349 (1033)
T KOG4266|consen 272 AQVSYTSWFLDAFNYAIATKIDVLNLSIGGPDFMDLPFVEKVWELTANNVIMVSAIGNDGPLY--GTLNNPADQSDVIGV 349 (1033)
T ss_pred ceeehhhHHHHHHHHHHhhhcceEeeccCCcccccchHHHHHHhhccCcEEEEEecCCCCcce--eecCCcccccceeee
Confidence 1 22 3344455555322 233456555566778
Q ss_pred eccCCCCCccccCCCCCCCC----CCCCccCcEEecCCceeeccCCCCCCCCCCCCCCCcceEEecccchhHHHHHHHhh
Q 037246 137 ANVSGAPGVPDFSSRGPNTI----IPDIVKPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHVTGAAA 212 (497)
Q Consensus 137 ~~~~~~~~~a~fSs~Gp~~~----~~~~~KPDI~APG~~I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAGiaA 212 (497)
+|.+.++.+|+|||||-+.+ ..+++||||++-|.+|...... .+...+||||.|+|.|||+++
T Consensus 350 GGIdfdD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~v~-------------~GCr~LSGTSVaSPVVAGav~ 416 (1033)
T KOG4266|consen 350 GGIDFDDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSKVS-------------TGCRSLSGTSVASPVVAGAVC 416 (1033)
T ss_pred ccccccchhhhhccCCcceeecCCcccccCCceEeeccccccCccc-------------ccchhccCCcccchhhhceee
Confidence 88999999999999997653 3689999999999999876443 357899999999999999999
Q ss_pred hhhcc----CCCCCHHHHHHHhhccccccCCCCCCCCCCcccceeeCccCCCC
Q 037246 213 YVKSF----HPDWSPSSIKSALMTTAWSINATSNPGGEFAFGAGHIDPVKAIS 261 (497)
Q Consensus 213 Ll~s~----~p~lsp~~ik~~L~~tA~~i~~~~~~~~~~~~G~G~vd~~~Al~ 261 (497)
|+.+. .--++|+.+|++|...|..++.. ..++||+|.+|..++.+
T Consensus 417 LLvS~~~qk~dl~NPASmKQaLiegA~kLpg~----NMfEQGaGkldLL~syq 465 (1033)
T KOG4266|consen 417 LLVSVEAQKKDLLNPASMKQALIEGAAKLPGP----NMFEQGAGKLDLLESYQ 465 (1033)
T ss_pred eEeeeheehhhccCHHHHHHHHHhHHhhCCCC----chhhccCcchhHHHHHH
Confidence 99773 33579999999999999998774 56899999999987755
No 21
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.88 E-value=2.5e-22 Score=198.89 Aligned_cols=98 Identities=36% Similarity=0.493 Sum_probs=81.3
Q ss_pred eceeeeccCCCCC----ccccCCCCCCCCCCCCccCcEEecCCceeeccCCCCCCCCCCCCCCCcceEEecccchhHHHH
Q 037246 132 SKSEAANVSGAPG----VPDFSSRGPNTIIPDIVKPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHV 207 (497)
Q Consensus 132 ~~~~v~~~~~~~~----~a~fSs~Gp~~~~~~~~KPDI~APG~~I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~V 207 (497)
..++|.+.+..+. ++.||++||.. ++++||||+|||.+|.+..+..... .......|..++|||||||+|
T Consensus 163 ~vi~Vga~~~~~~~~~~~~~~s~~G~~~--~~~~~~di~apG~~i~~~~~~~~~~----~~~~~~~~~~~~GTS~Aap~v 236 (264)
T cd07487 163 KVITVGAVDDNGPHDDGISYFSSRGPTG--DGRIKPDVVAPGENIVSCRSPGGNP----GAGVGSGYFEMSGTSMATPHV 236 (264)
T ss_pred CceEEEeccCCCCCCccccccccCCCCC--CCCcCCCEEccccceEecccccccc----CCCCCCceEeccccchHHHHH
Confidence 4456666666666 79999999987 8999999999999999986543110 112235789999999999999
Q ss_pred HHHhhhhhccCCCCCHHHHHHHhhcccc
Q 037246 208 TGAAAYVKSFHPDWSPSSIKSALMTTAW 235 (497)
Q Consensus 208 AGiaALl~s~~p~lsp~~ik~~L~~tA~ 235 (497)
||++||++|++|.+++++||++|++||+
T Consensus 237 aG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 237 SGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred HHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 9999999999999999999999999984
No 22
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=99.88 E-value=1.6e-22 Score=204.74 Aligned_cols=82 Identities=28% Similarity=0.391 Sum_probs=69.9
Q ss_pred eeeeccCCCC---CccccCCCCCCCCCCCCccCcEEecCCceeeccCCCCCCCCCCCCCCCcceEEecccchhHHHHHHH
Q 037246 134 SEAANVSGAP---GVPDFSSRGPNTIIPDIVKPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHVTGA 210 (497)
Q Consensus 134 ~~v~~~~~~~---~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAGi 210 (497)
.+|.+.+..+ .+++|||+|+. +|||+|||.+|+++.+.+ .|..++|||||||||||+
T Consensus 207 i~Vga~~~~~~~~~~~~~Sn~G~~-------~vdi~APG~~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~ 266 (291)
T cd07483 207 ITVGASSKKYENNLVANFSNYGKK-------NVDVFAPGERIYSTTPDN-------------EYETDSGTSMAAPVVSGV 266 (291)
T ss_pred eEEeeccccCCcccccccCCCCCC-------ceEEEeCCCCeEeccCcC-------------CeEeeccHHHHHHHHHHH
Confidence 3444444433 48999999973 249999999999997754 699999999999999999
Q ss_pred hhhhhccCCCCCHHHHHHHhhcccc
Q 037246 211 AAYVKSFHPDWSPSSIKSALMTTAW 235 (497)
Q Consensus 211 aALl~s~~p~lsp~~ik~~L~~tA~ 235 (497)
+||++|++|+|++.|||++|++||.
T Consensus 267 aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 267 AALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 9999999999999999999999983
No 23
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.87 E-value=2.1e-22 Score=203.46 Aligned_cols=102 Identities=23% Similarity=0.283 Sum_probs=76.5
Q ss_pred eceeeeccCCCCCccc--------------cCCCCCCCCCCCCccCcEEecCCceeeccCCCCCC-----CCCCCCCCCc
Q 037246 132 SKSEAANVSGAPGVPD--------------FSSRGPNTIIPDIVKPDISAPGVEILAGFSPAVEP-----SLLPGDKRSV 192 (497)
Q Consensus 132 ~~~~v~~~~~~~~~a~--------------fSs~Gp~~~~~~~~KPDI~APG~~I~s~~~~~~~~-----~~~~~~~~~~ 192 (497)
..++|.+.+..+.++. ||++||.. ++.+||||+|||++|.+........ ..........
T Consensus 171 ~vItVgA~~~~~~~~~~s~~~~~~~~~~~~fs~~Gp~~--~~~~KPDl~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (291)
T cd04847 171 NALTVGAITSDDDITDRARYSAVGPAPAGATTSSGPGS--PGPIKPDVVAFGGNLAYDPSGNAADGDLSLLTTLSSPSGG 248 (291)
T ss_pred hheeeeeeecCccCCCcccccccccccCCCccccCCCC--CCCcCCcEEeeCCceeecCCCCCccCcceeeecccCCCCC
Confidence 4456666666555554 66777766 8999999999999998764421100 0000111235
Q ss_pred ceEEecccchhHHHHHHHhhhhhccCCCCCHHHHHHHhhcccc
Q 037246 193 KYSILSGTSVACSHVTGAAAYVKSFHPDWSPSSIKSALMTTAW 235 (497)
Q Consensus 193 ~y~~~sGTSmAaP~VAGiaALl~s~~p~lsp~~ik~~L~~tA~ 235 (497)
.|..++|||||||||||++|||++++|+++|++||++|+++|+
T Consensus 249 ~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 249 GFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred cccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 7999999999999999999999999999999999999999984
No 24
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=99.87 E-value=9.2e-22 Score=198.11 Aligned_cols=85 Identities=40% Similarity=0.564 Sum_probs=70.7
Q ss_pred ccccCCCCCCCCCCCCccCcEEecCCceeeccCCCCCCCCCCCCCCCcceEEecccchhHHHHHHHhhhhhccC-----C
Q 037246 145 VPDFSSRGPNTIIPDIVKPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHVTGAAAYVKSFH-----P 219 (497)
Q Consensus 145 ~a~fSs~Gp~~~~~~~~KPDI~APG~~I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAGiaALl~s~~-----p 219 (497)
++.||++||.. ++++||||+|||.+|+++..... .........|...+|||||||+|||++|||+|++ |
T Consensus 201 ~~~~S~~G~~~--~~~~~pdv~ApG~~i~~~~~~~~----~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~ 274 (293)
T cd04842 201 VASFSSRGPTY--DGRIKPDLVAPGTGILSARSGGG----GIGDTSDSAYTSKSGTSMATPLVAGAAALLRQYFVDGYYP 274 (293)
T ss_pred cccccCcCCCC--CCCcCCCEECCCCCeEeccCCCC----CCCCCChhheeecCcHHHHHHHHHHHHHHHHHHHHhcCcC
Confidence 99999999987 88999999999999999875430 0111223579999999999999999999999985 4
Q ss_pred ---CCCHHHHHHHhhcccc
Q 037246 220 ---DWSPSSIKSALMTTAW 235 (497)
Q Consensus 220 ---~lsp~~ik~~L~~tA~ 235 (497)
.+++.++|++|++||+
T Consensus 275 ~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 275 TKFNPSAALLKALLINSAR 293 (293)
T ss_pred CCcCcCHHHHHHHHHhcCC
Confidence 6677899999999984
No 25
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.86 E-value=1.9e-21 Score=197.66 Aligned_cols=78 Identities=27% Similarity=0.421 Sum_probs=61.9
Q ss_pred CCCCccCcEE----------------ecCCceeeccCCCCCCCCCCCCCCCcceEEecccchhHHHHHHHhhhhhccCCC
Q 037246 157 IPDIVKPDIS----------------APGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHVTGAAAYVKSFHPD 220 (497)
Q Consensus 157 ~~~~~KPDI~----------------APG~~I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAGiaALl~s~~p~ 220 (497)
.+++.|||++ |||..|.+...... . .......|..++|||||||||||++|||+|++|.
T Consensus 194 ~~g~~~pd~~~~~g~~~~~~~~~~~~APG~~i~~~~~~~~--~---~~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~ 268 (298)
T cd07494 194 YPGRQVPDVCGLVGMLPHAAYLMLPVPPGSQLDRSCAAFP--D---GTPPNDGWGVFSGTSAAAPQVAGVCALMLQANPG 268 (298)
T ss_pred CCCCccCccccccCcCCcccccccccCCCcceeccccCCC--C---CCCCCCCeEeeccchHHHHHHHHHHHHHHHhCCC
Confidence 4677899984 68888865543210 0 0111246999999999999999999999999999
Q ss_pred CCHHHHHHHhhccccccCC
Q 037246 221 WSPSSIKSALMTTAWSINA 239 (497)
Q Consensus 221 lsp~~ik~~L~~tA~~i~~ 239 (497)
|+++|||++|+.||+++..
T Consensus 269 ~~~~~v~~~l~~ta~~~~~ 287 (298)
T cd07494 269 LSPERARSLLNKTARDVTK 287 (298)
T ss_pred CCHHHHHHHHHHhCcccCC
Confidence 9999999999999998755
No 26
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.86 E-value=2.6e-21 Score=196.22 Aligned_cols=105 Identities=25% Similarity=0.218 Sum_probs=76.9
Q ss_pred eeccCCCCCccccCCCCCCCCCCCCccCcEEecCCceeeccCCCCCCCCCCCCCCCcceEEecccchhHHHHHHHhhhhh
Q 037246 136 AANVSGAPGVPDFSSRGPNTIIPDIVKPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHVTGAAAYVK 215 (497)
Q Consensus 136 v~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAGiaALl~ 215 (497)
++++...+....|+++.+. ...||||+|||.+|.++.+.. .|..++|||||||+|||++||++
T Consensus 190 V~~V~~~~~~~~~~~~~~~----~~~~~dv~ApG~~i~s~~~~~-------------~~~~~sGTS~AaP~VaG~aAll~ 252 (297)
T cd07480 190 VAAVGALGRTGNFSAVANF----SNGEVDIAAPGVDIVSAAPGG-------------GYRSMSGTSMATPHVAGVAALWA 252 (297)
T ss_pred EEEECCCCCCCCccccCCC----CCCceEEEeCCCCeEeecCCC-------------cEEEeCcHHHHHHHHHHHHHHHH
Confidence 4444555555566554432 235789999999999987754 69999999999999999999999
Q ss_pred ccCCCCCHHHHHHHhhccccccCC--CCCCCCCCcccceeeCcc
Q 037246 216 SFHPDWSPSSIKSALMTTAWSINA--TSNPGGEFAFGAGHIDPV 257 (497)
Q Consensus 216 s~~p~lsp~~ik~~L~~tA~~i~~--~~~~~~~~~~G~G~vd~~ 257 (497)
|++|.+++.+++++|+........ .........+|+|++++.
T Consensus 253 ~~~p~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~g~G~~~~~ 296 (297)
T cd07480 253 EALPKAGGRALAALLQARLTAARTTQFAPGLDLPDRGVGLGLAP 296 (297)
T ss_pred HhCcccCHHHHHHHHHHHHhhcccCCCCCCCChhhcCCceeecC
Confidence 999999999988888743222111 011235677899999875
No 27
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.85 E-value=3.6e-21 Score=190.05 Aligned_cols=95 Identities=38% Similarity=0.530 Sum_probs=77.4
Q ss_pred eceeeeccCCCCCccccCCCCCC---------CCCCCCccCcEEecCCceeeccCCCCCCCCCCCCCCCcceEEecccch
Q 037246 132 SKSEAANVSGAPGVPDFSSRGPN---------TIIPDIVKPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSV 202 (497)
Q Consensus 132 ~~~~v~~~~~~~~~a~fSs~Gp~---------~~~~~~~KPDI~APG~~I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSm 202 (497)
....|.+.+..+.++.||++|.. .......|||++|||.+|+++.... .....|..++||||
T Consensus 151 ~vi~Vga~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~d~~apG~~i~~~~~~~---------~~~~~~~~~~GTS~ 221 (254)
T cd07490 151 AALSVGAVDRDDEDAWFSSFGSSGASLVSAPDSPPDEYTKPDVAAPGVDVYSARQGA---------NGDGQYTRLSGTSM 221 (254)
T ss_pred ceeEEecccccCCccCccCCcccccccccCCCCCccCCcCceEEeccCCeEccccCC---------CCCCCeeecccHHH
Confidence 44566668889999999988811 1124568999999999999865221 11246999999999
Q ss_pred hHHHHHHHhhhhhccCCCCCHHHHHHHhhcccc
Q 037246 203 ACSHVTGAAAYVKSFHPDWSPSSIKSALMTTAW 235 (497)
Q Consensus 203 AaP~VAGiaALl~s~~p~lsp~~ik~~L~~tA~ 235 (497)
|||+|||++|||+|++|+++++|||++|++||+
T Consensus 222 AaP~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 222 AAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 999999999999999999999999999999984
No 28
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.83 E-value=1.2e-20 Score=185.14 Aligned_cols=90 Identities=29% Similarity=0.383 Sum_probs=74.4
Q ss_pred eceeeeccCCCCCccccCCCCCCCCCCCCccCcEEecCCceeeccCCCCCCCCCCCCCCCcceEEecccchhHHHHHHHh
Q 037246 132 SKSEAANVSGAPGVPDFSSRGPNTIIPDIVKPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHVTGAA 211 (497)
Q Consensus 132 ~~~~v~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAGia 211 (497)
....|.+.+..+.+++||++|+.+ |++|||.++.......... .+.....|..++|||||||+|||++
T Consensus 153 ~vi~Vga~~~~~~~~~~s~~g~~~--------~~~apG~~~~~~~~~~~~~----~~~~~~~~~~~~GTS~Aap~vaG~~ 220 (242)
T cd07498 153 SVIAVAATDSNDARASYSNYGNYV--------DLVAPGVGIWTTGTGRGSA----GDYPGGGYGSFSGTSFASPVAAGVA 220 (242)
T ss_pred CeEEEEEeCCCCCccCcCCCCCCe--------EEEeCcCCcccCCcccccc----ccCCCCceEeeCcHHHHHHHHHHHH
Confidence 445677788899999999999988 9999999998875432110 1112346899999999999999999
Q ss_pred hhhhccCCCCCHHHHHHHhhcc
Q 037246 212 AYVKSFHPDWSPSSIKSALMTT 233 (497)
Q Consensus 212 ALl~s~~p~lsp~~ik~~L~~t 233 (497)
|||+|++|+|+++|||++|+.|
T Consensus 221 All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 221 ALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred HHHHHhCCCCCHHHHHHHHHhC
Confidence 9999999999999999999875
No 29
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.83 E-value=1.9e-20 Score=181.70 Aligned_cols=60 Identities=37% Similarity=0.476 Sum_probs=56.0
Q ss_pred CcEEecCCceeeccCCCCCCCCCCCCCCCcceEEecccchhHHHHHHHhhhhhccCCCCCHHHHHHHhhcccc
Q 037246 163 PDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHVTGAAAYVKSFHPDWSPSSIKSALMTTAW 235 (497)
Q Consensus 163 PDI~APG~~I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAGiaALl~s~~p~lsp~~ik~~L~~tA~ 235 (497)
+++.|||.+|.++.+.+ .|..++|||||||+|||++|||+|++|+|+++|||++|+.||+
T Consensus 163 ~~~~apg~~i~~~~~~~-------------~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 163 VEFSADGVDIIAPAPHG-------------RYLTVSGNSFAAPHVTGMVALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred ceEEeCCCCeEeecCCC-------------CEEEeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Confidence 39999999999987754 6999999999999999999999999999999999999999984
No 30
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.83 E-value=2.7e-20 Score=187.57 Aligned_cols=94 Identities=30% Similarity=0.415 Sum_probs=76.6
Q ss_pred eceeeeccCCCCCccccCCCCCCCCCCCCccCcEEecCCceeeccCCCCCCCC--CCCCCCCcceEEecccchhHHHHHH
Q 037246 132 SKSEAANVSGAPGVPDFSSRGPNTIIPDIVKPDISAPGVEILAGFSPAVEPSL--LPGDKRSVKYSILSGTSVACSHVTG 209 (497)
Q Consensus 132 ~~~~v~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~s~~~~~~~~~~--~~~~~~~~~y~~~sGTSmAaP~VAG 209 (497)
..++|.+.+..+.+++||++|+.+ ||+|||++|.++......... .........|..++|||||||+|||
T Consensus 190 ~vi~Vga~~~~~~~~~~S~~g~~v--------di~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG 261 (285)
T cd07496 190 GVIAVGATDLRGQRASYSNYGPAV--------DVSAPGGDCASDVNGDGYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAG 261 (285)
T ss_pred ceEEEeccCCCCCcccccCCCCCC--------CEEeCCCCccccCCCCccccccccccCCCCCceEeeCcHHHHHHHHHH
Confidence 455677789999999999999988 999999999988765422100 0111223568999999999999999
Q ss_pred HhhhhhccCCCCCHHHHHHHhhcc
Q 037246 210 AAAYVKSFHPDWSPSSIKSALMTT 233 (497)
Q Consensus 210 iaALl~s~~p~lsp~~ik~~L~~t 233 (497)
++||++|++|++++++||++|++|
T Consensus 262 ~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 262 VAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHhC
Confidence 999999999999999999999875
No 31
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=99.83 E-value=4.4e-21 Score=191.46 Aligned_cols=117 Identities=32% Similarity=0.443 Sum_probs=97.1
Q ss_pred eeeeccCCCCCccccCCCCCCCCCCCCccCcEEecCCceeeccCCCCCCCCCCCCCCCcceEEecccchhHHHHHHHhhh
Q 037246 134 SEAANVSGAPGVPDFSSRGPNTIIPDIVKPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHVTGAAAY 213 (497)
Q Consensus 134 ~~v~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAGiaAL 213 (497)
++|.+.+..+.++.||++|+.. .++++||||+|||.++.+.++... ...|...+|||||||+|||++||
T Consensus 166 i~Vg~~~~~~~~~~~s~~g~~~-~~~~~~~di~a~G~~i~~~~~~~~----------~~~~~~~~GTS~Aap~vag~~Al 234 (282)
T PF00082_consen 166 ITVGAVDNNGQPASYSNYGGPS-DDGRIKPDIAAPGGNILSAVPGSD----------RGSYTSFSGTSFAAPVVAGAAAL 234 (282)
T ss_dssp EEEEEEETTSSBSTTSSBSTTE-TTCTTCEEEEEECSSEEEEETTTE----------SEEEEEEESHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccc-cccccccccccccccccccccccc----------cccccccCcCCchHHHHHHHHHH
Confidence 4566677778999999998654 478999999999999988887541 13588999999999999999999
Q ss_pred hhccCCCCCHHHHHHHhhccccccCCCCCCCCCCcccceeeCccCCCC
Q 037246 214 VKSFHPDWSPSSIKSALMTTAWSINATSNPGGEFAFGAGHIDPVKAIS 261 (497)
Q Consensus 214 l~s~~p~lsp~~ik~~L~~tA~~i~~~~~~~~~~~~G~G~vd~~~Al~ 261 (497)
++|++|++++++||++|+++|.++...........+|||+||+.+|++
T Consensus 235 l~~~~p~~~~~~i~~~l~~ta~~~~~~~~~~~~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 235 LLSKYPNLTPAEIKALLINTADDLGSTNGEGYDNSYGWGLINAEKALN 282 (282)
T ss_dssp HHHHSTTSHHHHHHHHHHHHSBESSETTSSSSHHHHTTSBE-HHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHhCcccCcCCCCCCCCCccCChhCHHHHhC
Confidence 999999999999999999999988732123356788999999999863
No 32
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=99.82 E-value=6.6e-20 Score=192.34 Aligned_cols=83 Identities=28% Similarity=0.332 Sum_probs=71.5
Q ss_pred CCCccccCCCCCCCCCCCCccCcEEecCCceeeccCCCCCCCCCCCCCCCcceEEecccchhHHHHHHHhhhhhc----c
Q 037246 142 APGVPDFSSRGPNTIIPDIVKPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHVTGAAAYVKS----F 217 (497)
Q Consensus 142 ~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAGiaALl~s----~ 217 (497)
.+.++.||||||+. ++.+||||+|||++|.+. +... ...|..++|||||||||||++|||+| .
T Consensus 326 ~~~~~~fSSrGP~~--dG~~~pdI~APG~~I~s~-p~~~----------~~~~~~~sGTSmAaP~VAG~aALllSa~k~~ 392 (412)
T cd04857 326 PGNQYTWSSRGPTA--DGALGVSISAPGGAIASV-PNWT----------LQGSQLMNGTSMSSPNACGGIALLLSGLKAE 392 (412)
T ss_pred CCccccccccCCcc--cCCcCceEEeCCCcEEEc-ccCC----------CCCeEEecccHHHHHHHHHHHHHHHhhhhhc
Confidence 45688999999988 899999999999999875 2210 13689999999999999999999975 4
Q ss_pred CCCCCHHHHHHHhhcccccc
Q 037246 218 HPDWSPSSIKSALMTTAWSI 237 (497)
Q Consensus 218 ~p~lsp~~ik~~L~~tA~~i 237 (497)
+|.++|.+||++|++||+++
T Consensus 393 ~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 393 GIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred CCCCCHHHHHHHHHHhCccC
Confidence 78999999999999999864
No 33
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=99.82 E-value=4e-20 Score=179.52 Aligned_cols=81 Identities=38% Similarity=0.595 Sum_probs=73.7
Q ss_pred eceeeeccCCCCCccccCCCCCCCCCCCCccCcEEecCCceeeccCCCCCCCCCCCCCCCcceEEecccchhHHHHHHHh
Q 037246 132 SKSEAANVSGAPGVPDFSSRGPNTIIPDIVKPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHVTGAA 211 (497)
Q Consensus 132 ~~~~v~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAGia 211 (497)
...+|.+.+..+.+..||++|+.+ |+.|||.+|+++.+.. .|..++|||||||+|||++
T Consensus 149 ~vi~Vga~~~~~~~~~~s~~g~~~--------~~~apg~~i~~~~~~~-------------~~~~~~GTS~Aap~vag~~ 207 (229)
T cd07477 149 SVIAVGAVDSNNNRASFSSTGPEV--------ELAAPGVDILSTYPNN-------------DYAYLSGTSMATPHVAGVA 207 (229)
T ss_pred CEEEEEeecCCCCcCCccCCCCCc--------eEEeCCCCeEEecCCC-------------CEEEEccHHHHHHHHHHHH
Confidence 445677788899999999999977 9999999999987754 5899999999999999999
Q ss_pred hhhhccCCCCCHHHHHHHhhcc
Q 037246 212 AYVKSFHPDWSPSSIKSALMTT 233 (497)
Q Consensus 212 ALl~s~~p~lsp~~ik~~L~~t 233 (497)
|||+|++|.+++.+||++|++|
T Consensus 208 All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 208 ALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred HHHHHhCCCCCHHHHHHHHHhC
Confidence 9999999999999999999875
No 34
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.81 E-value=1.2e-19 Score=179.80 Aligned_cols=83 Identities=36% Similarity=0.550 Sum_probs=73.7
Q ss_pred ceeeeccCCCCCccccCCCCCCCCCCCCccCcEEecCCceeeccCCCCCCCCCCCCCCCcceEEecccchhHHHHHHHhh
Q 037246 133 KSEAANVSGAPGVPDFSSRGPNTIIPDIVKPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHVTGAAA 212 (497)
Q Consensus 133 ~~~v~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAGiaA 212 (497)
.+.|.+.+..+.++.||++|+.. ||+.|||.++++..+.. .|..++|||||||+|||++|
T Consensus 177 vi~Vga~~~~~~~~~~s~~g~~~-------~~~~apG~~~~~~~~~~-------------~~~~~~GTS~AaP~vaG~~A 236 (259)
T cd07473 177 IISVAATDSNDALASFSNYGKKT-------VDLAAPGVDILSTSPGG-------------GYGYMSGTSMATPHVAGAAA 236 (259)
T ss_pred eEEEEecCCCCCcCcccCCCCCC-------cEEEeccCCeEeccCCC-------------cEEEeccHhHHHHHHHHHHH
Confidence 34566688899999999999853 59999999999976543 69999999999999999999
Q ss_pred hhhccCCCCCHHHHHHHhhcccc
Q 037246 213 YVKSFHPDWSPSSIKSALMTTAW 235 (497)
Q Consensus 213 Ll~s~~p~lsp~~ik~~L~~tA~ 235 (497)
|++|++|.+++++||++|++||+
T Consensus 237 ll~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 237 LLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred HHHHhCCCCCHHHHHHHHHHhCC
Confidence 99999999999999999999984
No 35
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=99.79 E-value=2.2e-19 Score=177.27 Aligned_cols=87 Identities=28% Similarity=0.321 Sum_probs=73.9
Q ss_pred ceeeeccCCCCCcccc--CCCCCCCCCCCCccCcEEecCCceeeccCCCCCCCCCCCCCCCcceEEecccchhHHHHHHH
Q 037246 133 KSEAANVSGAPGVPDF--SSRGPNTIIPDIVKPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHVTGA 210 (497)
Q Consensus 133 ~~~v~~~~~~~~~a~f--Ss~Gp~~~~~~~~KPDI~APG~~I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAGi 210 (497)
.++|.+.+..+....| ||+|... ...+++|||.+|.++.+.. ...|..++|||||||+|||+
T Consensus 179 vi~Vga~~~~~~~~~~~~s~~~~~~-----~~~~~~apG~~i~~~~~~~-----------~~~~~~~~GTS~Aap~vaG~ 242 (267)
T cd04848 179 WIAVVAVDPNGTIASYSYSNRCGVA-----ANWCLAAPGENIYSTDPDG-----------GNGYGRVSGTSFAAPHVSGA 242 (267)
T ss_pred EEEEEEecCCCCcccccccccchhh-----hhheeecCcCceeecccCC-----------CCcccccceeEchHHHHHHH
Confidence 3567778888888888 9999754 1337999999999987631 13688999999999999999
Q ss_pred hhhhhccCCCCCHHHHHHHhhcccc
Q 037246 211 AAYVKSFHPDWSPSSIKSALMTTAW 235 (497)
Q Consensus 211 aALl~s~~p~lsp~~ik~~L~~tA~ 235 (497)
+||++|++|.++++|||++|+.||+
T Consensus 243 ~Al~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 243 AALLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred HHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 9999999999999999999999984
No 36
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=99.78 E-value=7.7e-19 Score=176.83 Aligned_cols=95 Identities=22% Similarity=0.230 Sum_probs=71.9
Q ss_pred eceeeeccCCCCCccccCCCCCCCCCCCCccCcEEecCCceeeccCCCC--C-CCC------CCCCCCCcceEEecccch
Q 037246 132 SKSEAANVSGAPGVPDFSSRGPNTIIPDIVKPDISAPGVEILAGFSPAV--E-PSL------LPGDKRSVKYSILSGTSV 202 (497)
Q Consensus 132 ~~~~v~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~s~~~~~~--~-~~~------~~~~~~~~~y~~~sGTSm 202 (497)
..++|.+++..+.++.||++|... +|++|||.++........ . ... .........|..++||||
T Consensus 190 ~vi~Vga~~~~~~~~~~S~~g~~~-------~~~~apG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~ 262 (294)
T cd07482 190 NVITVSATDNNGNLSSFSNYGNSR-------IDLAAPGGDFLLLDQYGKEKWVNNGLMTKEQILTTAPEGGYAYMYGTSL 262 (294)
T ss_pred ceEEEEeeCCCCCcCccccCCCCc-------ceEECCCCCcccccccCccccccccccccceeeecccCCceEeecchhh
Confidence 345677788899999999999754 399999999853221110 0 000 001123457999999999
Q ss_pred hHHHHHHHhhhhhccCCCCCH-HHHHHHhhcc
Q 037246 203 ACSHVTGAAAYVKSFHPDWSP-SSIKSALMTT 233 (497)
Q Consensus 203 AaP~VAGiaALl~s~~p~lsp-~~ik~~L~~t 233 (497)
|||+|||++|||+|++|.+++ .|||++|++|
T Consensus 263 AaP~VaG~aAll~~~~p~~~~~~~v~~~L~~T 294 (294)
T cd07482 263 AAPKVSGALALIIDKNPLKKPPDEAIRILYNT 294 (294)
T ss_pred hhHHHHHHHHHHHHHCCCCCcHHHHHHHHhhC
Confidence 999999999999999999999 9999999876
No 37
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.76 E-value=1.6e-18 Score=171.65 Aligned_cols=68 Identities=21% Similarity=0.181 Sum_probs=57.5
Q ss_pred eceeeeccCCCCCccccCCCCCCCCCCCCccCcEEecCCceeeccCCCCCCCCCCCCCCCcceEEecccchhHHHHHHHh
Q 037246 132 SKSEAANVSGAPGVPDFSSRGPNTIIPDIVKPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHVTGAA 211 (497)
Q Consensus 132 ~~~~v~~~~~~~~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAGia 211 (497)
....|.+.+..+.++.||++|+.+ |++|||++|+++.+.. ....|..++|||||||||||++
T Consensus 162 ~Vi~VgA~~~~g~~~~~S~~g~~v--------d~~APG~~i~s~~~~~----------~~~~~~~~sGTS~Atp~vaGva 223 (247)
T cd07491 162 RIFRIGAADEDGGADAPVGDEDRV--------DYILPGENVEARDRPP----------LSNSFVTHTGSSVATALAAGLA 223 (247)
T ss_pred CeEEEEeeCCCCCCccccCCCCcc--------eEEeCCCceecCCcCC----------CCCCeeeeccHHHHHHHHHHHH
Confidence 345677788889999999999988 9999999999986521 0136999999999999999999
Q ss_pred hhhhcc
Q 037246 212 AYVKSF 217 (497)
Q Consensus 212 ALl~s~ 217 (497)
||+++.
T Consensus 224 AL~l~~ 229 (247)
T cd07491 224 ALILYC 229 (247)
T ss_pred HHHHHH
Confidence 999975
No 38
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=5e-16 Score=169.87 Aligned_cols=101 Identities=30% Similarity=0.345 Sum_probs=85.0
Q ss_pred CccccCCCCCCCCCCCCccCcEEecCCceeeccCCCCCCCCCCCCCCCcceEEecccchhHHHHHHHhhhhhcc----CC
Q 037246 144 GVPDFSSRGPNTIIPDIVKPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHVTGAAAYVKSF----HP 219 (497)
Q Consensus 144 ~~a~fSs~Gp~~~~~~~~KPDI~APG~~I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAGiaALl~s~----~p 219 (497)
..-.+|||||+. |+-+--.|+|||+.|-+- |... ...-..|.|||||+|+++|.+|||++. +-
T Consensus 453 ~~YtWsSRgP~~--DG~lGVsi~APggAiAsV-P~~t----------lq~~qLMNGTSMsSP~acG~IAllLSgLKa~ni 519 (1304)
T KOG1114|consen 453 NPYTWSSRGPCL--DGDLGVSISAPGGAIASV-PQYT----------LQNSQLMNGTSMSSPSACGAIALLLSGLKAQNI 519 (1304)
T ss_pred CccccccCCCCc--CCCcceEEecCCccccCC-chhh----------hhhhhhhCCcccCCccccchHHHHHHHHHhcCC
Confidence 456699999998 888888999999998653 3211 124568999999999999999999654 56
Q ss_pred CCCHHHHHHHhhccccccCCCCCCCCCCcccceeeCccCCCC
Q 037246 220 DWSPSSIKSALMTTAWSINATSNPGGEFAFGAGHIDPVKAIS 261 (497)
Q Consensus 220 ~lsp~~ik~~L~~tA~~i~~~~~~~~~~~~G~G~vd~~~Al~ 261 (497)
.+||..||.+|++||.++++. ..+.+|.|+++..+|.+
T Consensus 520 ~ytpysVrrAlenTa~~l~~i----d~faqG~GmlqVdkAyE 557 (1304)
T KOG1114|consen 520 PYTPYSVRRALENTATKLGDI----DSFAQGQGMLQVDKAYE 557 (1304)
T ss_pred CCcHHHHHHHHHhcccccCcc----chhccCcceeehhHHHH
Confidence 899999999999999998875 67899999999999976
No 39
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=99.49 E-value=1.3e-13 Score=132.54 Aligned_cols=83 Identities=35% Similarity=0.473 Sum_probs=68.3
Q ss_pred eceeeeccCCCCCcc-ccCCCCCCCCCCCCccCcEEecCCceeeccCCCCCCCCCCCCCCCcceEEecccchhHHHHHHH
Q 037246 132 SKSEAANVSGAPGVP-DFSSRGPNTIIPDIVKPDISAPGVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHVTGA 210 (497)
Q Consensus 132 ~~~~v~~~~~~~~~a-~fSs~Gp~~~~~~~~KPDI~APG~~I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAGi 210 (497)
...+|.+.+..+... .++++|+.. |+.|||.++...... ....+..++|||||||+|||+
T Consensus 158 ~vi~Vga~~~~~~~~~~~~~~~~~~--------~~~apg~~~~~~~~~-----------~~~~~~~~~GTS~Aap~vaG~ 218 (241)
T cd00306 158 NVIAVGAVDRDGTPASPSSNGGAGV--------DIAAPGGDILSSPTT-----------GGGGYATLSGTSMAAPIVAGV 218 (241)
T ss_pred ceEEEEecCcCCCccCCcCCCCCCc--------eEEeCcCCccCcccC-----------CCCCeEeeccHHHHHHHHHHH
Confidence 455666677777777 788877755 999999999875111 124699999999999999999
Q ss_pred hhhhhccCCCCCHHHHHHHhhcc
Q 037246 211 AAYVKSFHPDWSPSSIKSALMTT 233 (497)
Q Consensus 211 aALl~s~~p~lsp~~ik~~L~~t 233 (497)
+||++|++|.+++.++|++|+.+
T Consensus 219 ~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 219 AALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred HHHHHHHCCCCCHHHHHHHHhhC
Confidence 99999999999999999999864
No 40
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.47 E-value=5.7e-14 Score=139.22 Aligned_cols=106 Identities=18% Similarity=0.030 Sum_probs=73.8
Q ss_pred CCeeEEeeccCCCCC-CCCCCCCCceeEeceeeeccCCCCCcc---ccCCCCCCCCCCCCccCcEEecCCceeeccCCCC
Q 037246 105 GNAPLVYGKLNRTGC-PEFASRNPQAYISKSEAANVSGAPGVP---DFSSRGPNTIIPDIVKPDISAPGVEILAGFSPAV 180 (497)
Q Consensus 105 Gn~p~v~a~~~~~~C-~~~s~~~p~~~i~~~~v~~~~~~~~~a---~fSs~Gp~~~~~~~~KPDI~APG~~I~s~~~~~~ 180 (497)
|...++.+||.+..| .......|......++|.+++..+.++ .|||++.....++..||||+|||++|++ +.
T Consensus 123 GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~~~~~s~~sn~~~~~~~~~~~~~di~APG~~i~s--~~-- 198 (247)
T cd07488 123 EVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGDRFFASDVSNAGSEINSYGRRKVLIVAPGSNYNL--PD-- 198 (247)
T ss_pred CEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCCcceecccccccCCCCCCCCceeEEEEeeeeEEC--CC--
Confidence 557777788877432 111112233222445677777777654 5566553322367889999999999998 32
Q ss_pred CCCCCCCCCCCcceEEecccchhHHHHHHHhhhhhccCCCCCHHH
Q 037246 181 EPSLLPGDKRSVKYSILSGTSVACSHVTGAAAYVKSFHPDWSPSS 225 (497)
Q Consensus 181 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAGiaALl~s~~p~lsp~~ 225 (497)
+.|..++|||||||||||++|||++++|++.+.+
T Consensus 199 -----------~~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~ 232 (247)
T cd07488 199 -----------GKDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKG 232 (247)
T ss_pred -----------CceeeecccchHHHHHHHHHHHHHHHChhhhhCc
Confidence 2588999999999999999999999998776544
No 41
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=2.3e-11 Score=128.94 Aligned_cols=106 Identities=33% Similarity=0.465 Sum_probs=81.4
Q ss_pred eeeeccCCCCCccccCCCCCC--CCCCCCccCcEEecCCceee-----ccCCCCCCCCCCCCCCCcceEEecccchhHHH
Q 037246 134 SEAANVSGAPGVPDFSSRGPN--TIIPDIVKPDISAPGVEILA-----GFSPAVEPSLLPGDKRSVKYSILSGTSVACSH 206 (497)
Q Consensus 134 ~~v~~~~~~~~~a~fSs~Gp~--~~~~~~~KPDI~APG~~I~s-----~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~ 206 (497)
+.+...+..+.++.||++|.. . +++|||.+|.+ .+++.. ..|..++||||++||
T Consensus 307 i~v~a~~~~~~~~~~s~~g~~~~~--------~~~apg~~i~~~~~~~~~~~~~-----------~~~~~~~Gts~a~p~ 367 (508)
T COG1404 307 IAVGALDLSDTVASFSNDGSPTGV--------DIAAPGVNILSLSAVNTLPGDG-----------ADYVTLSGTSMAAPH 367 (508)
T ss_pred EEEecCCCCCccccccccCCCCCc--------ceeCCCccccccccceeeeCCc-----------cceEeeccccccccH
Confidence 344445556999999999984 5 99999999988 444320 249999999999999
Q ss_pred HHHHhhhhhccCC-CCCHHHHHHHhhccccccCCCCCCCCCCcccceeeCccCCCC
Q 037246 207 VTGAAAYVKSFHP-DWSPSSIKSALMTTAWSINATSNPGGEFAFGAGHIDPVKAIS 261 (497)
Q Consensus 207 VAGiaALl~s~~p-~lsp~~ik~~L~~tA~~i~~~~~~~~~~~~G~G~vd~~~Al~ 261 (497)
|+|++||+++.+| .+++.+++..+..++.. .. .......++.|..+...+..
T Consensus 368 v~g~aal~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~ 420 (508)
T COG1404 368 VSGVAALVLSANPNELTPAQVRNLIVTTAGL-TP--LSGVDNLVGGGLANLDAAAT 420 (508)
T ss_pred HHHHHHHHHccCcccCCHHHHHHHHhhcccc-cc--CCccccccccCccccccccc
Confidence 9999999999999 89999999998888874 11 11244567777666655554
No 42
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=5e-11 Score=120.37 Aligned_cols=71 Identities=18% Similarity=0.120 Sum_probs=55.5
Q ss_pred cceEEecccchhHHHHHHHhhhhhccCCCCCHHHHHHHhhccccc--cCCC----------CCCCCCCcccceeeCccCC
Q 037246 192 VKYSILSGTSVACSHVTGAAAYVKSFHPDWSPSSIKSALMTTAWS--INAT----------SNPGGEFAFGAGHIDPVKA 259 (497)
Q Consensus 192 ~~y~~~sGTSmAaP~VAGiaALl~s~~p~lsp~~ik~~L~~tA~~--i~~~----------~~~~~~~~~G~G~vd~~~A 259 (497)
.....-||||.|||-.||+.||.++++|.|+..++..+-.-|.+. +-+. .....+..+|+|.+|+.+.
T Consensus 376 ~ct~~hsgtsaaapeaagvfalaleanp~ltwrd~qhltvltskrnslfd~~~rf~w~mngvglefnhlfgfgvldagam 455 (629)
T KOG3526|consen 376 RCTRSHSGTSAAAPEAAGVFALALEANPSLTWRDLQHLTVLTSKRNSLFDGRCRFEWQMNGVGLEFNHLFGFGVLDAGAM 455 (629)
T ss_pred ceecccCCccccCccccceeeeeeccCCCcchhhhhheeeeecccchhhcccceEEEeccccceeeecccccccccHHHH
Confidence 456789999999999999999999999999999998876666653 2221 1123567799999999877
Q ss_pred CCC
Q 037246 260 ISP 262 (497)
Q Consensus 260 l~~ 262 (497)
+.-
T Consensus 456 v~l 458 (629)
T KOG3526|consen 456 VML 458 (629)
T ss_pred HHH
Confidence 653
No 43
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=98.57 E-value=2.9e-07 Score=80.22 Aligned_cols=87 Identities=11% Similarity=0.228 Sum_probs=59.6
Q ss_pred eeeccCCCCceEEEEEEEEecCCCCeEEEEEEec--------CCC----------e-EEEEeCCeEEEeeCCcEEEEEEE
Q 037246 314 AARVQENKPFAVNFSRTVTNVGQGNSKYKAKVTV--------DPK----------I-KINVAPSDLSFKSLKEKQSFVVT 374 (497)
Q Consensus 314 ~~~~~~~~~~~~t~~~tvtN~g~~~~ty~~~v~~--------~~g----------~-~v~vsp~~lt~~~~g~s~~~~Vt 374 (497)
+|++.. ...+++++|+|.|+.+.+|++++.. ..| . .++.++.++++ +||++++++|+
T Consensus 2 ~L~d~~---~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV-~ag~s~~v~vt 77 (112)
T PF06280_consen 2 SLKDTG---NKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTV-PAGQSKTVTVT 77 (112)
T ss_dssp EEEEE----SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEEE
T ss_pred CccccC---CceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEE-CCCCEEEEEEE
Confidence 455553 3589999999999999999998761 011 1 67788999999 89999999999
Q ss_pred EEeccC---CCCCceeeEEEEEcC-cc-ccccCcE
Q 037246 375 VSGVGL---KENSMVSASLVWSDG-TY-NVRSPIV 404 (497)
Q Consensus 375 ~~~~~~---~~~~~~~G~i~~~~~-~~-av~~pI~ 404 (497)
|+++.. ....+|+|+|.|++. .+ .+++|++
T Consensus 78 i~~p~~~~~~~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 78 ITPPSGLDASNGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp EE--GGGHHTT-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred EEehhcCCcccCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 999652 236899999999864 33 5888874
No 44
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=97.50 E-value=0.00024 Score=74.39 Aligned_cols=48 Identities=23% Similarity=0.307 Sum_probs=38.4
Q ss_pred CCCccCcEEec---CCceeeccCCCCCCCCCCCCCCCcceEEecccchhHHHHHHHhhhhhccCC
Q 037246 158 PDIVKPDISAP---GVEILAGFSPAVEPSLLPGDKRSVKYSILSGTSVACSHVTGAAAYVKSFHP 219 (497)
Q Consensus 158 ~~~~KPDI~AP---G~~I~s~~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAGiaALl~s~~p 219 (497)
.+|-+|||+|. +...+.... ..+....|||+|||++||++|||.|++.
T Consensus 249 ~gR~~PDVaa~a~~~~g~~i~~~--------------g~~~~~gGTS~aaP~~Ag~~Al~n~~~~ 299 (361)
T cd04056 249 SGRGVPDVAANADPGTGYLVVVN--------------GQWYLVGGTSAAAPLFAGLIALINQARL 299 (361)
T ss_pred CCCcCCeeecccCCCCCEEEEEC--------------CeEEeeCCccHHHHHHHHHHHHHHHHhh
Confidence 47889999998 455544333 2588899999999999999999998853
No 45
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=96.93 E-value=0.0078 Score=51.05 Aligned_cols=90 Identities=18% Similarity=0.180 Sum_probs=65.9
Q ss_pred CCCCCCCceeeeccCCCCceEEEEEEEEecCCCCeEEEEEEecCCCeEEEEeCCeEEEeeCCcEEEEEEEEEeccCCCCC
Q 037246 305 PKDLNYPSMAARVQENKPFAVNFSRTVTNVGQGNSKYKAKVTVDPKIKINVAPSDLSFKSLKEKQSFVVTVSGVGLKENS 384 (497)
Q Consensus 305 ~~~lN~psi~~~~~~~~~~~~t~~~tvtN~g~~~~ty~~~v~~~~g~~v~vsp~~lt~~~~g~s~~~~Vt~~~~~~~~~~ 384 (497)
+..|+|..+.+. ...+.+++|+|.|..+..|++.......-.++++|..-.+ ++|++.+++|+|.+.. ..+
T Consensus 8 P~~ldFG~v~~g------~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l-~PG~~~~~~V~~~~~~--~~g 78 (102)
T PF14874_consen 8 PKELDFGNVFVG------QTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFL-APGESVELEVTFSPTK--PLG 78 (102)
T ss_pred CCEEEeeEEccC------CEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEE-CCCCEEEEEEEEEeCC--CCc
Confidence 456777766544 4677888999999999999997644234457777777667 7999999999999654 345
Q ss_pred ceeeEEEEEcCccccccCc
Q 037246 385 MVSASLVWSDGTYNVRSPI 403 (497)
Q Consensus 385 ~~~G~i~~~~~~~av~~pI 403 (497)
.+.+.|.+......+.+|+
T Consensus 79 ~~~~~l~i~~e~~~~~i~v 97 (102)
T PF14874_consen 79 DYEGSLVITTEGGSFEIPV 97 (102)
T ss_pred eEEEEEEEEECCeEEEEEE
Confidence 6889998875555555554
No 46
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=95.56 E-value=0.05 Score=44.02 Aligned_cols=58 Identities=17% Similarity=0.181 Sum_probs=37.9
Q ss_pred ceEEEEEEEEecCCCC-eEEEEEEecCCCeEEEEeCCeEEEeeCCcEEEEEEEEEeccC
Q 037246 323 FAVNFSRTVTNVGQGN-SKYKAKVTVDPKIKINVAPSDLSFKSLKEKQSFVVTVSGVGL 380 (497)
Q Consensus 323 ~~~t~~~tvtN~g~~~-~ty~~~v~~~~g~~v~vsp~~lt~~~~g~s~~~~Vt~~~~~~ 380 (497)
...+++++|+|.|... ...++++..|.|-.+...|.++.-.++|++++++++|+++..
T Consensus 5 ~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~ 63 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPAD 63 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-TT
T ss_pred CEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCCC
Confidence 5788899999999765 457888888999887788887754589999999999999863
No 47
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=94.90 E-value=0.14 Score=55.12 Aligned_cols=69 Identities=17% Similarity=0.106 Sum_probs=53.0
Q ss_pred ceEEecccchhHHHHHHHhhhhhccCCCCCHHHHHHHhhccccccCCCC------CC--CCCCcccceeeCccCCCC
Q 037246 193 KYSILSGTSVACSHVTGAAAYVKSFHPDWSPSSIKSALMTTAWSINATS------NP--GGEFAFGAGHIDPVKAIS 261 (497)
Q Consensus 193 ~y~~~sGTSmAaP~VAGiaALl~s~~p~lsp~~ik~~L~~tA~~i~~~~------~~--~~~~~~G~G~vd~~~Al~ 261 (497)
.-.--.|||.++|+.||+.+|.++++|.++..++..++..++....... .. .....+|+|++|+...+.
T Consensus 248 c~e~h~g~s~~~~~~a~~~~~~~~~~~~ls~~d~~~l~~~~~~~~~~~~~~~~~n~~g~~~~h~~g~~~~~~~~~~~ 324 (431)
T KOG3525|consen 248 CTEGHTGTSASAPLAAGIIALALEANPCLSWRDSQHLIVLTSRPKVLLKGKWKSNGAGGLVSHLYGFGLLDAKALVS 324 (431)
T ss_pred ccccCCCCcCccchhcchhhhhhccCccccccchhhhhhhhcchhhccCCCceEecCCceeeeeecccccCcchhhh
Confidence 3445779999999999999999999999999998888888876422210 01 133579999999987765
No 48
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=94.47 E-value=0.49 Score=41.28 Aligned_cols=57 Identities=14% Similarity=0.135 Sum_probs=41.8
Q ss_pred ceEEEEEEEEecCCCCeEEEEEEecCCCeEEEEeCCeEEEeeCCcEEEEEEEEEeccC
Q 037246 323 FAVNFSRTVTNVGQGNSKYKAKVTVDPKIKINVAPSDLSFKSLKEKQSFVVTVSGVGL 380 (497)
Q Consensus 323 ~~~t~~~tvtN~g~~~~ty~~~v~~~~g~~v~vsp~~lt~~~~g~s~~~~Vt~~~~~~ 380 (497)
-.-.++++|.|.+..+.+|++++..++++.+......+++ ++|++.++.|.+.++..
T Consensus 31 I~N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v-~~g~~~~~~v~v~~p~~ 87 (118)
T PF11614_consen 31 IRNQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITV-PPGETREVPVFVTAPPD 87 (118)
T ss_dssp EEEEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE--TT-EEEEEEEEEE-GG
T ss_pred EEEEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEE-CCCCEEEEEEEEEECHH
Confidence 5677888999999999999999998889999665588888 89999999999999874
No 49
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=93.84 E-value=0.55 Score=41.66 Aligned_cols=70 Identities=11% Similarity=0.208 Sum_probs=53.2
Q ss_pred CceEEEEEEEEecCCCCeEEEEEEec----CCC--------------e------EEEEeCCeEEEeeCCcEEEEEEEEEe
Q 037246 322 PFAVNFSRTVTNVGQGNSKYKAKVTV----DPK--------------I------KINVAPSDLSFKSLKEKQSFVVTVSG 377 (497)
Q Consensus 322 ~~~~t~~~tvtN~g~~~~ty~~~v~~----~~g--------------~------~v~vsp~~lt~~~~g~s~~~~Vt~~~ 377 (497)
...+++.++|+|.++.+.+|.+.+.. ..| + -+++ |..+++ +++++++++++++.
T Consensus 26 ~q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~-~~~Vtl-~~~~sk~V~~~i~~ 103 (121)
T PF06030_consen 26 GQKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKI-PKEVTL-PPNESKTVTFTIKM 103 (121)
T ss_pred CCEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccC-CcEEEE-CCCCEEEEEEEEEc
Confidence 36899999999999999999998541 111 1 1223 555888 89999999999999
Q ss_pred ccCCCCCceeeEEEEE
Q 037246 378 VGLKENSMVSASLVWS 393 (497)
Q Consensus 378 ~~~~~~~~~~G~i~~~ 393 (497)
+...-.+.+-|.|.|.
T Consensus 104 P~~~f~G~ilGGi~~~ 119 (121)
T PF06030_consen 104 PKKAFDGIILGGIYFS 119 (121)
T ss_pred CCCCcCCEEEeeEEEE
Confidence 8855567788888775
No 50
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=89.76 E-value=3.7 Score=35.82 Aligned_cols=68 Identities=21% Similarity=0.084 Sum_probs=48.2
Q ss_pred eEEEEEEEEecCCCCeEEEEEEec---CC----CeEEEEeCCeEEEeeCCcEEEEEEEEEeccCCCCCceeeEEEEE
Q 037246 324 AVNFSRTVTNVGQGNSKYKAKVTV---DP----KIKINVAPSDLSFKSLKEKQSFVVTVSGVGLKENSMVSASLVWS 393 (497)
Q Consensus 324 ~~t~~~tvtN~g~~~~ty~~~v~~---~~----g~~v~vsp~~lt~~~~g~s~~~~Vt~~~~~~~~~~~~~G~i~~~ 393 (497)
..+.+++|+|.|+.+..+.+.+.. .. .-.+.++|..+.+ ++|+++.++| +.....+.+....=+|.+.
T Consensus 15 ~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L-~pg~~q~vRv-~~~~~~~~~~E~~yrl~~~ 89 (122)
T PF00345_consen 15 QRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRL-EPGESQTVRV-YRGSKLPIDRESLYRLSFR 89 (122)
T ss_dssp SSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEE-ETTEEEEEEE-EECSGS-SSS-EEEEEEEE
T ss_pred CCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEe-CCCCcEEEEE-EecCCCCCCceEEEEEEEE
Confidence 346678999999988888887764 11 1257799999999 8999999999 7754444444455556664
No 51
>COG1470 Predicted membrane protein [Function unknown]
Probab=87.84 E-value=3.4 Score=44.41 Aligned_cols=72 Identities=13% Similarity=0.049 Sum_probs=59.3
Q ss_pred ceEEEEEEEEecCCCCe-EEEEEEecCCCeEEEEeCCeEEEeeCCcEEEEEEEEEeccCCCCCceeeEEEEEc
Q 037246 323 FAVNFSRTVTNVGQGNS-KYKAKVTVDPKIKINVAPSDLSFKSLKEKQSFVVTVSGVGLKENSMVSASLVWSD 394 (497)
Q Consensus 323 ~~~t~~~tvtN~g~~~~-ty~~~v~~~~g~~v~vsp~~lt~~~~g~s~~~~Vt~~~~~~~~~~~~~G~i~~~~ 394 (497)
..++....+.|.|+.+. .-++++..|.|-++.|++.++---++|+++++.+|++++.....+-|+=+|.-++
T Consensus 397 ee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~aGdY~i~i~~ks 469 (513)
T COG1470 397 EEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPEDAGAGDYRITITAKS 469 (513)
T ss_pred ccceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCCCCCCcEEEEEEEee
Confidence 46788889999998874 5778888999999999999886668999999999999998655566776666654
No 52
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=84.68 E-value=0.55 Score=47.82 Aligned_cols=66 Identities=45% Similarity=0.831 Sum_probs=58.3
Q ss_pred ccccccCCCCcCCCcc----cCccCCCCCCCeEEEEeeceecCCCCCCCCCCCCCCCCCCceeecCCccc
Q 037246 33 LQLQTTRSWDFMGFAE----TVKRNPSVESDIVIGVLDSGIWPELESFNDEGLSDPPKKWKGVCEGGKNF 98 (497)
Q Consensus 33 ~~~~tt~s~~~~gl~~----~~w~~~~~G~gV~VaVlDTGI~~~Hp~f~~~~~~~~~~~~~g~~~~G~~~ 98 (497)
++||++|+|+|+|+.. .+|.++.+|+||+|||||||||++||+|.+......+..|.+.|..+..+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~ 70 (307)
T cd04852 1 YQLHTTRSPDFLGLPGAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDF 70 (307)
T ss_pred CCccccCCHHHcCCCCCCCcccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCc
Confidence 5789999999999994 24667999999999999999999999999988888888999988887665
No 53
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=83.65 E-value=10 Score=31.93 Aligned_cols=54 Identities=20% Similarity=0.142 Sum_probs=41.1
Q ss_pred ceEEEEEEEEecCCCCeEEEEEEecCCCeEEEEeCCeEEEeeCCcEEEEEEEEEecc
Q 037246 323 FAVNFSRTVTNVGQGNSKYKAKVTVDPKIKINVAPSDLSFKSLKEKQSFVVTVSGVG 379 (497)
Q Consensus 323 ~~~t~~~tvtN~g~~~~ty~~~v~~~~g~~v~vsp~~lt~~~~g~s~~~~Vt~~~~~ 379 (497)
..++..++|+|.++....|.+....+.... |.|..-.+ .+|++.++.|++....
T Consensus 18 ~~~~~~l~l~N~s~~~i~fKiktt~~~~y~--v~P~~G~i-~p~~~~~i~I~~~~~~ 71 (109)
T PF00635_consen 18 KQQSCELTLTNPSDKPIAFKIKTTNPNRYR--VKPSYGII-EPGESVEITITFQPFD 71 (109)
T ss_dssp S-EEEEEEEEE-SSSEEEEEEEES-TTTEE--EESSEEEE--TTEEEEEEEEE-SSS
T ss_pred ceEEEEEEEECCCCCcEEEEEEcCCCceEE--ecCCCEEE-CCCCEEEEEEEEEecc
Confidence 457777899999999999999988777654 67998777 7899999999998754
No 54
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=82.60 E-value=1.3 Score=38.76 Aligned_cols=39 Identities=38% Similarity=0.438 Sum_probs=28.3
Q ss_pred eEEecCCceEEeeccccccCCCCCCcccceeecccc-----hhhhccCc
Q 037246 441 KVVLRNGKFYQFTIGNSANSFELPGSELPLVYGKDV-----ISLCRKHI 484 (497)
Q Consensus 441 ~v~lgng~~~~~~~g~s~~~~~~~~~~~~l~~~~~~-----~~~c~~~~ 484 (497)
.|+||||+++. |+||++... ..+|++|..+. ...|.+..
T Consensus 1 ~i~LGng~~i~---G~sl~~~~~--~~~~~~~~~~~~~~~~~~~C~~~~ 44 (126)
T cd02120 1 VVTLGNGKTIV---GQSLYPGNL--KTYPLVYKSANSGDVDASLCLPGS 44 (126)
T ss_pred CEEeCCCCEEE---EEEccCCCC--CccceEeccCcCCCCccccCCCCC
Confidence 47899999999 999997554 46788874441 25687554
No 55
>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P ....
Probab=81.15 E-value=0.72 Score=36.96 Aligned_cols=20 Identities=35% Similarity=0.403 Sum_probs=17.3
Q ss_pred cccCCCCeEEEEcCcccccc
Q 037246 17 PERGMDGVVSVFPRKMLQLQ 36 (497)
Q Consensus 17 ~l~~~p~V~~v~pd~~~~~~ 36 (497)
.|+++|+|.+|+||+.+++|
T Consensus 63 ~L~~~p~V~~Ve~D~~v~l~ 82 (82)
T PF05922_consen 63 KLRKDPGVKSVEPDQVVSLH 82 (82)
T ss_dssp HHHTSTTEEEEEEECEEEE-
T ss_pred HHHcCCCeEEEEeCceEecC
Confidence 46899999999999999875
No 56
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=81.14 E-value=8.1 Score=41.72 Aligned_cols=56 Identities=18% Similarity=0.149 Sum_probs=48.8
Q ss_pred ceEEEEEEEEecCCCCeEEEEEEecCCCeEEEEeCCeEEEeeCCcEEEEEEEEEecc
Q 037246 323 FAVNFSRTVTNVGQGNSKYKAKVTVDPKIKINVAPSDLSFKSLKEKQSFVVTVSGVG 379 (497)
Q Consensus 323 ~~~t~~~tvtN~g~~~~ty~~~v~~~~g~~v~vsp~~lt~~~~g~s~~~~Vt~~~~~ 379 (497)
-....++.+.|.+..+.+|.++++..+++.+....+.+++ ++|+..++.|.+..+.
T Consensus 346 i~N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v-~~g~~~~~~v~v~~~~ 401 (434)
T TIGR02745 346 VENTYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHV-KAGEKVKLPVFLRTPP 401 (434)
T ss_pred EEEEEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEE-CCCCEEEEEEEEEech
Confidence 4677888999999999999999999889888776458888 7999999999998875
No 57
>COG1470 Predicted membrane protein [Function unknown]
Probab=76.38 E-value=28 Score=37.67 Aligned_cols=68 Identities=9% Similarity=0.179 Sum_probs=49.3
Q ss_pred ceEEEEEEEEecCCCCeEEEEEEe-cCCCeEEEEeCC-----eEEEeeCCcEEEEEEEEEeccCCCCCceeeEEE
Q 037246 323 FAVNFSRTVTNVGQGNSKYKAKVT-VDPKIKINVAPS-----DLSFKSLKEKQSFVVTVSGVGLKENSMVSASLV 391 (497)
Q Consensus 323 ~~~t~~~tvtN~g~~~~ty~~~v~-~~~g~~v~vsp~-----~lt~~~~g~s~~~~Vt~~~~~~~~~~~~~G~i~ 391 (497)
.+..+++++.|.|..+.+|.++.. .|++-...+.-. ++.+ .+||+++|+|.+.++.-...+.|.=.|+
T Consensus 284 ~t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL-~~gE~kdvtleV~ps~na~pG~Ynv~I~ 357 (513)
T COG1470 284 TTASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKL-KPGEEKDVTLEVYPSLNATPGTYNVTIT 357 (513)
T ss_pred CceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEe-cCCCceEEEEEEecCCCCCCCceeEEEE
Confidence 567888899999999999999998 687765555433 3455 7899999999999876333333333333
No 58
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=74.19 E-value=13 Score=26.76 Aligned_cols=44 Identities=18% Similarity=0.064 Sum_probs=27.4
Q ss_pred EEEEecCCCCeEEEEEEecCCCeEEEEeCCeEEEeeCCcEEEEEEEE
Q 037246 329 RTVTNVGQGNSKYKAKVTVDPKIKINVAPSDLSFKSLKEKQSFVVTV 375 (497)
Q Consensus 329 ~tvtN~g~~~~ty~~~v~~~~g~~v~vsp~~lt~~~~g~s~~~~Vt~ 375 (497)
++++|.|+.+....- +...=|.. .++.+.-.+ ++||+..++|++
T Consensus 2 F~~~N~g~~~L~I~~-v~tsCgCt-~~~~~~~~i-~PGes~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDSPLVITD-VQTSCGCT-TAEYSKKPI-APGESGKIKVTY 45 (45)
T ss_pred EEEEECCCCcEEEEE-eeEccCCE-EeeCCcceE-CCCCEEEEEEEC
Confidence 678999998765543 33333332 233333345 789999998874
No 59
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=72.11 E-value=32 Score=31.33 Aligned_cols=69 Identities=9% Similarity=0.197 Sum_probs=52.1
Q ss_pred ceEEEEEEEEecCCCC-eEEEEEEecCCCeEEEEeCCeEEEeeCCcEEEEEEEEEeccCCCCCceeeEEEEE
Q 037246 323 FAVNFSRTVTNVGQGN-SKYKAKVTVDPKIKINVAPSDLSFKSLKEKQSFVVTVSGVGLKENSMVSASLVWS 393 (497)
Q Consensus 323 ~~~t~~~tvtN~g~~~-~ty~~~v~~~~g~~v~vsp~~lt~~~~g~s~~~~Vt~~~~~~~~~~~~~G~i~~~ 393 (497)
....+.+-+-|..+.. ...++.......+++--.|..+++ .|++.++++.++...+ .+.++.+|.|++.
T Consensus 69 ~DIvLDvllvNqT~~tLqNl~vElat~gdLklve~p~~~tL-~P~~~~~i~~~iKVsS-tetGvIfG~I~Yd 138 (140)
T PF07718_consen 69 YDIVLDVLLVNQTNETLQNLTVELATLGDLKLVERPQPITL-APHGFARIKATIKVSS-TETGVIFGNIVYD 138 (140)
T ss_pred eeEEEEEEEEeCChhhhhcEEEEEEecCCcEEccCCCceee-CCCcEEEEEEEEEEEe-ccCCEEEEEEEEe
Confidence 4566667777866543 344444444567888888999999 7899999999999987 4668999999985
No 60
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=70.55 E-value=3.7 Score=40.70 Aligned_cols=63 Identities=16% Similarity=0.182 Sum_probs=42.5
Q ss_pred cccccCcEEEeccCCCCCCcc-ee--eecCceeEecCCCcccccceeeEEecCCceEEeeccccccC
Q 037246 397 YNVRSPIVLYTNKGDSDPTSA-TV--SSVAPCVLTLGASHVDCQIVDKVVLRNGKFYQFTIGNSANS 460 (497)
Q Consensus 397 ~av~~pI~V~~~agn~gp~~~-~v--~n~aPw~~tv~Ast~dr~~~~~v~lgng~~~~~~~g~s~~~ 460 (497)
.+.++++++++++||+++... .. -...|++++|||.+.++++......+....+. -+|+.+..
T Consensus 131 ~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~~~g~~~~~S~~g~~vd~~-APG~~i~s 196 (247)
T cd07491 131 EALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAADEDGGADAPVGDEDRVDYI-LPGENVEA 196 (247)
T ss_pred HHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeCCCCCCccccCCCCcceEE-eCCCceec
Confidence 456789999999999987653 22 23458999999999988765544444443332 35666544
No 61
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=67.65 E-value=3.3 Score=49.24 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=22.7
Q ss_pred ceEEecccchhHHHHHHHhhhhhccC
Q 037246 193 KYSILSGTSVACSHVTGAAAYVKSFH 218 (497)
Q Consensus 193 ~y~~~sGTSmAaP~VAGiaALl~s~~ 218 (497)
......|||.|+|+.||+.|++-|..
T Consensus 472 ~~~~~GGTS~AtPltAGiiAdi~q~~ 497 (1174)
T COG4934 472 QTYVAGGTSLATPLTAGIIADIEQYI 497 (1174)
T ss_pred EEEEecccccccchHHHHHHHHHHHh
Confidence 45578899999999999999998773
No 62
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=63.90 E-value=4.5 Score=42.39 Aligned_cols=44 Identities=16% Similarity=0.200 Sum_probs=34.1
Q ss_pred cccccCcEEEeccCCCCCCccee-----------eecCceeEecCCCccccccee
Q 037246 397 YNVRSPIVLYTNKGDSDPTSATV-----------SSVAPCVLTLGASHVDCQIVD 440 (497)
Q Consensus 397 ~av~~pI~V~~~agn~gp~~~~v-----------~n~aPw~~tv~Ast~dr~~~~ 440 (497)
++..++|.|++++||+|...... -...||+++|||+++.+....
T Consensus 148 ~a~~~GitvvaAsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~~~~~ 202 (361)
T cd04056 148 QAAAQGITVLAASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYTGGTG 202 (361)
T ss_pred HHHhCCeEEEEeCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccCCCcc
Confidence 55678999999999998865422 244599999999999876554
No 63
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=62.58 E-value=5.8 Score=40.82 Aligned_cols=35 Identities=17% Similarity=0.379 Sum_probs=29.5
Q ss_pred ccCcEEEeccCCCCCCcceeee--cCceeEecCCCcc
Q 037246 400 RSPIVLYTNKGDSDPTSATVSS--VAPCVLTLGASHV 434 (497)
Q Consensus 400 ~~pI~V~~~agn~gp~~~~v~n--~aPw~~tv~Ast~ 434 (497)
+.++++++++||+|+...++.. .+|++++|||.+-
T Consensus 166 ~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~ 202 (311)
T cd07497 166 YTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATN 202 (311)
T ss_pred cCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccC
Confidence 7899999999999997666654 5689999999863
No 64
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=62.23 E-value=82 Score=25.49 Aligned_cols=52 Identities=17% Similarity=0.234 Sum_probs=32.3
Q ss_pred ceEEEEEEEEecCCCC-eEEEEEEecCCCeEEEEeCCeE-EEeeCCcEEEEEEEEEec
Q 037246 323 FAVNFSRTVTNVGQGN-SKYKAKVTVDPKIKINVAPSDL-SFKSLKEKQSFVVTVSGV 378 (497)
Q Consensus 323 ~~~t~~~tvtN~g~~~-~ty~~~v~~~~g~~v~vsp~~l-t~~~~g~s~~~~Vt~~~~ 378 (497)
...+++.+|+|.|... ..+.+.+... +..+ .-..+ .+ ++|++.++++++..+
T Consensus 19 ~~~~i~~~V~N~G~~~~~~~~v~~~~~-~~~~--~~~~i~~L-~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 19 EPVTITVTVKNNGTADAENVTVRLYLD-GNSV--STVTIPSL-APGESETVTFTWTPP 72 (101)
T ss_dssp SEEEEEEEEEE-SSS-BEEEEEEEEET-TEEE--EEEEESEB--TTEEEEEEEEEE-S
T ss_pred CEEEEEEEEEECCCCCCCCEEEEEEEC-Ccee--ccEEECCc-CCCcEEEEEEEEEeC
Confidence 5788899999999875 5566665432 3332 12223 45 689999988888886
No 65
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=55.94 E-value=43 Score=26.98 Aligned_cols=39 Identities=15% Similarity=0.335 Sum_probs=30.2
Q ss_pred EEEEeCCeEEEeeCCcEEEEEEEEEeccCCCCCceeeEEEEEcC
Q 037246 352 KINVAPSDLSFKSLKEKQSFVVTVSGVGLKENSMVSASLVWSDG 395 (497)
Q Consensus 352 ~v~vsp~~lt~~~~g~s~~~~Vt~~~~~~~~~~~~~G~i~~~~~ 395 (497)
.|+++|..+++ ..|++..|+++++.... .. ...+.|+++
T Consensus 4 ~i~i~p~~~~l-~~G~~~~l~a~~~~~~~---~~-~~~v~w~Ss 42 (81)
T smart00635 4 SVTVTPTTASV-KKGLTLQLTATVTPSSA---KV-TGKVTWTSS 42 (81)
T ss_pred EEEEeCCeeEE-eCCCeEEEEEEEECCCC---Cc-cceEEEEEC
Confidence 57889999999 68999999999765432 22 778889764
No 66
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=48.96 E-value=54 Score=26.89 Aligned_cols=20 Identities=10% Similarity=-0.006 Sum_probs=13.0
Q ss_pred eEEEeeCCcEEEEEEEEEecc
Q 037246 359 DLSFKSLKEKQSFVVTVSGVG 379 (497)
Q Consensus 359 ~lt~~~~g~s~~~~Vt~~~~~ 379 (497)
..++ ++||+.+|+.+++...
T Consensus 53 ~~~l-~pGe~~~~~~~~~~~~ 72 (82)
T PF12690_consen 53 EETL-EPGESLTYEETWDLKD 72 (82)
T ss_dssp EEEE--TT-EEEEEEEESS--
T ss_pred EEEE-CCCCEEEEEEEECCCC
Confidence 4566 7899999998887765
No 67
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=48.42 E-value=1.4e+02 Score=24.45 Aligned_cols=60 Identities=10% Similarity=0.072 Sum_probs=38.2
Q ss_pred eEEEEEEEEecCCCCeEEEEEEecCCCeEEEEeCCeEEEeeCCcEEEEEEEEEeccCCCCCceeeEEEE
Q 037246 324 AVNFSRTVTNVGQGNSKYKAKVTVDPKIKINVAPSDLSFKSLKEKQSFVVTVSGVGLKENSMVSASLVW 392 (497)
Q Consensus 324 ~~t~~~tvtN~g~~~~ty~~~v~~~~g~~v~vsp~~lt~~~~g~s~~~~Vt~~~~~~~~~~~~~G~i~~ 392 (497)
...+.++++|.|....++++.-..- -.-.|.++++ ++|++.+....+. ...+||.=.|..
T Consensus 19 ~g~l~l~l~N~g~~~~~~~v~~~~y----~~~~~~~~~v-~ag~~~~~~w~l~----~s~gwYDl~v~~ 78 (89)
T PF05506_consen 19 TGNLRLTLSNPGSAAVTFTVYDNAY----GGGGPWTYTV-AAGQTVSLTWPLA----ASGGWYDLTVTG 78 (89)
T ss_pred CCEEEEEEEeCCCCcEEEEEEeCCc----CCCCCEEEEE-CCCCEEEEEEeec----CCCCcEEEEEEc
Confidence 4588899999999888887754211 1123556777 7898877666552 245777744433
No 68
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=47.63 E-value=13 Score=35.67 Aligned_cols=42 Identities=17% Similarity=0.280 Sum_probs=32.0
Q ss_pred ccccCcEEEeccCCCCCCccee--eecCceeEecCCCcccccce
Q 037246 398 NVRSPIVLYTNKGDSDPTSATV--SSVAPCVLTLGASHVDCQIV 439 (497)
Q Consensus 398 av~~pI~V~~~agn~gp~~~~v--~n~aPw~~tv~Ast~dr~~~ 439 (497)
+.+.++++++++||.+...... -...|++++||+.+.+.+..
T Consensus 120 a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~~~~~~ 163 (229)
T cd07477 120 AYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDSNNNRA 163 (229)
T ss_pred HHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecCCCCcC
Confidence 4467899999999998765543 45568999999988765543
No 69
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=47.60 E-value=14 Score=36.69 Aligned_cols=40 Identities=18% Similarity=0.268 Sum_probs=30.1
Q ss_pred ccccCcEEEeccCCCCCCcceeeec--CceeEecCCCccccc
Q 037246 398 NVRSPIVLYTNKGDSDPTSATVSSV--APCVLTLGASHVDCQ 437 (497)
Q Consensus 398 av~~pI~V~~~agn~gp~~~~v~n~--aPw~~tv~Ast~dr~ 437 (497)
+.+.+|++++++||+++...++.+- .|++++|||.+-+.+
T Consensus 124 ~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~~~~~ 165 (255)
T cd07479 124 LTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDFDDN 165 (255)
T ss_pred HHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeeccCCc
Confidence 3468999999999999866555433 378999999865554
No 70
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=47.30 E-value=16 Score=35.42 Aligned_cols=38 Identities=16% Similarity=0.193 Sum_probs=30.5
Q ss_pred cCcEEEeccCCCCCCcceeeecCceeEecCCCcccccc
Q 037246 401 SPIVLYTNKGDSDPTSATVSSVAPCVLTLGASHVDCQI 438 (497)
Q Consensus 401 ~pI~V~~~agn~gp~~~~v~n~aPw~~tv~Ast~dr~~ 438 (497)
+++++++++||.+......-...|++++|||.+.+.+.
T Consensus 129 ~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~~~~~ 166 (242)
T cd07498 129 KGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDSNDAR 166 (242)
T ss_pred CCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCCCCCc
Confidence 78999999999987655545567999999998766543
No 71
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=43.17 E-value=22 Score=35.37 Aligned_cols=21 Identities=29% Similarity=0.624 Sum_probs=19.2
Q ss_pred CeEEEEeeceecCCCCCCCCC
Q 037246 59 DIVIGVLDSGIWPELESFNDE 79 (497)
Q Consensus 59 gV~VaVlDTGI~~~Hp~f~~~ 79 (497)
.|+||||||||+++||+|+++
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~ 21 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNS 21 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhc
Confidence 489999999999999999964
No 72
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=39.93 E-value=19 Score=35.99 Aligned_cols=39 Identities=21% Similarity=0.350 Sum_probs=30.7
Q ss_pred cccccCcEEEeccCCCCCCcceeeecCceeEecCCCccc
Q 037246 397 YNVRSPIVLYTNKGDSDPTSATVSSVAPCVLTLGASHVD 435 (497)
Q Consensus 397 ~av~~pI~V~~~agn~gp~~~~v~n~aPw~~tv~Ast~d 435 (497)
++.+.+++++.++||.++.....-...|++++|||.+-+
T Consensus 133 ~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~ 171 (267)
T cd07476 133 MCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDDD 171 (267)
T ss_pred HHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecCC
Confidence 456789999999999987654444556999999998755
No 73
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=39.71 E-value=22 Score=34.91 Aligned_cols=40 Identities=15% Similarity=0.261 Sum_probs=32.8
Q ss_pred ccccCcEEEeccCCCCCCcceeeecCceeEecCCCccccc
Q 037246 398 NVRSPIVLYTNKGDSDPTSATVSSVAPCVLTLGASHVDCQ 437 (497)
Q Consensus 398 av~~pI~V~~~agn~gp~~~~v~n~aPw~~tv~Ast~dr~ 437 (497)
+.+.++++++++||.++.....-...|++++||+.+.+-.
T Consensus 149 a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~~~~ 188 (260)
T cd07484 149 AWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQDDK 188 (260)
T ss_pred HHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCCCCC
Confidence 4568999999999999876666777899999999876543
No 74
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=37.65 E-value=21 Score=36.35 Aligned_cols=30 Identities=13% Similarity=0.341 Sum_probs=27.7
Q ss_pred cCccCCCCCCCeEEEEeeceecCCCCCCCCC
Q 037246 49 TVKRNPSVESDIVIGVLDSGIWPELESFNDE 79 (497)
Q Consensus 49 ~~w~~~~~G~gV~VaVlDTGI~~~Hp~f~~~ 79 (497)
.+|+++.+|+||+||||||||+..|| |..+
T Consensus 12 ~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~ 41 (298)
T cd07494 12 RVHQRGITGRGVRVAMVDTGFYAHPF-FESR 41 (298)
T ss_pred HHHhcCCCCCCcEEEEEeCCCcCCch-hhcC
Confidence 89999999999999999999999998 7755
No 75
>PRK13203 ureB urease subunit beta; Reviewed
Probab=36.59 E-value=1.1e+02 Score=26.45 Aligned_cols=50 Identities=14% Similarity=0.223 Sum_probs=28.2
Q ss_pred ceEEEEEEEEecCCCCeEEEEEEe---cC----------CCeEEEEe-CCeEEEeeCCcEEEEEE
Q 037246 323 FAVNFSRTVTNVGQGNSKYKAKVT---VD----------PKIKINVA-PSDLSFKSLKEKQSFVV 373 (497)
Q Consensus 323 ~~~t~~~tvtN~g~~~~ty~~~v~---~~----------~g~~v~vs-p~~lt~~~~g~s~~~~V 373 (497)
+..+.+++|+|+||.+...-.... .. -|..+.+- -..+.| .+|+++++++
T Consensus 18 gr~~~~l~V~NtGDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRF-EPG~~k~V~L 81 (102)
T PRK13203 18 GRETVTLTVANTGDRPIQVGSHYHFFEVNPALSFDREAARGMRLNIPAGTAVRF-EPGQTREVEL 81 (102)
T ss_pred CCCEEEEEEEeCCCCceEEccccchhhcCcchhccHhhhcCcccccCCCCeEeE-CCCCeEEEEE
Confidence 457788999999997643222211 10 13333321 123556 6788888766
No 76
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=36.40 E-value=28 Score=37.36 Aligned_cols=34 Identities=21% Similarity=0.460 Sum_probs=28.0
Q ss_pred ccCcEEEeccCCCCCCcceee---ecCceeEecCCCc
Q 037246 400 RSPIVLYTNKGDSDPTSATVS---SVAPCVLTLGASH 433 (497)
Q Consensus 400 ~~pI~V~~~agn~gp~~~~v~---n~aPw~~tv~Ast 433 (497)
+.+|+++++|||+||...++. +.++.+++|||..
T Consensus 274 ~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~ 310 (412)
T cd04857 274 KHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYV 310 (412)
T ss_pred hCCCEEEEECCCCCCCccccCCccccCCCeEEEccee
Confidence 579999999999999877664 3467899999963
No 77
>PRK15308 putative fimbrial protein TcfA; Provisional
Probab=36.23 E-value=1.8e+02 Score=28.86 Aligned_cols=54 Identities=9% Similarity=0.087 Sum_probs=38.9
Q ss_pred eEEEEEEEEecCCCCeEEEEEEe---cC---C----------CeEEEEeCCeEEEeeCCcEEEEEEEEEec
Q 037246 324 AVNFSRTVTNVGQGNSKYKAKVT---VD---P----------KIKINVAPSDLSFKSLKEKQSFVVTVSGV 378 (497)
Q Consensus 324 ~~t~~~tvtN~g~~~~ty~~~v~---~~---~----------g~~v~vsp~~lt~~~~g~s~~~~Vt~~~~ 378 (497)
.....++|.|.|+.+..+.+++. .| . .-.+-++|..+++ ++|+++.+++.-..+
T Consensus 32 ~~~~~v~V~N~g~~~~~vqV~v~r~~~PG~~~e~~~~~~~~~~~eLiaSP~~l~L-~pg~~q~IRli~lg~ 101 (234)
T PRK15308 32 EEATSLFVYSKSDHTQYVRTRIKRIEHPATPQEKEVPAGNDIETGLVVSPEKFAL-PAGTTRTVRVISLQA 101 (234)
T ss_pred cceEEEEEEeCCCCcEEEEEEEEEEcCCCCCCCcccccccCCCCcEEEcCceeEE-CCCCeEEEEEEEcCC
Confidence 34455789999998887777643 22 1 1257789999999 899999988765543
No 78
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=36.11 E-value=1.1e+02 Score=26.43 Aligned_cols=50 Identities=12% Similarity=0.195 Sum_probs=28.4
Q ss_pred ceEEEEEEEEecCCCCeEEEEEE---ecC----------CCeEEEEe-CCeEEEeeCCcEEEEEE
Q 037246 323 FAVNFSRTVTNVGQGNSKYKAKV---TVD----------PKIKINVA-PSDLSFKSLKEKQSFVV 373 (497)
Q Consensus 323 ~~~t~~~tvtN~g~~~~ty~~~v---~~~----------~g~~v~vs-p~~lt~~~~g~s~~~~V 373 (497)
+..+.+++|+|.||.+...-... +.. -|..+.+- -..+.| .+|+++++++
T Consensus 18 gr~~~~l~V~NtGDRpIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRF-EPG~~k~V~L 81 (101)
T cd00407 18 GREAVTLKVKNTGDRPIQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRF-EPGEEKEVEL 81 (101)
T ss_pred CCCEEEEEEEeCCCcceEEccccchhhcCccccccHHHcccceecccCCCeEEE-CCCCeEEEEE
Confidence 46778899999999764322211 110 13333331 224566 6788888766
No 79
>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) []. Structurally, cellulases and xylanases generally consist of a catalytic domain joined to a cellulose-binding domain (CBD) by a short linker sequence rich in proline and/or hydroxy-amino acids. The CBD domain is found either at the N-terminal or at the C-terminal extremity of these enzymes. As it is shown in the following schematic representation, there are two conserved cysteines in this CBD domain - one at each extremity of the domain - which have been shown [] to be involved in a disulphide bond. There are also four conserved tryptophan, two are involved in cellulose binding. The CBD of a number of bacterial cellulases has been shown to consist of about 105 amino acid residues [, ]. +-------------------------------------------------+ | | xCxxxxWxxxxxNxxxWxxxxxxxWxxxxxxxxWNxxxxxGxxxxxxxxxxCx 'C': conserved cysteine involved in a disulphide bond. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2CZN_A 2CWR_A 1HEH_C 1HEJ_C 3NDZ_E 3NDY_E 2XBD_A 1E5C_A 1XBD_A 1E5B_A ....
Probab=36.01 E-value=2.6e+02 Score=23.44 Aligned_cols=31 Identities=23% Similarity=0.204 Sum_probs=23.8
Q ss_pred eEEEEEEEEecCCCC-eEEEEEEecCCCeEEE
Q 037246 324 AVNFSRTVTNVGQGN-SKYKAKVTVDPKIKIN 354 (497)
Q Consensus 324 ~~t~~~tvtN~g~~~-~ty~~~v~~~~g~~v~ 354 (497)
-...+++|+|.++.. ..|++++..|.+.+|.
T Consensus 14 Gf~~~v~v~N~~~~~i~~W~v~~~~~~~~~i~ 45 (101)
T PF00553_consen 14 GFQGEVTVTNNGSSPINGWTVTFTFPSGQTIT 45 (101)
T ss_dssp EEEEEEEEEESSSSTEESEEEEEEESTTEEEE
T ss_pred CeEEEEEEEECCCCccCCEEEEEEeCCCCEEe
Confidence 456678999999877 4699999888766654
No 80
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=35.26 E-value=1.2e+02 Score=31.97 Aligned_cols=51 Identities=18% Similarity=0.204 Sum_probs=28.4
Q ss_pred ceEEEEEEEEecCCCCeEEEEE----Ee--cC----------------CCeEEEEeCCeEEEeeCCcEEEEEEEEEe
Q 037246 323 FAVNFSRTVTNVGQGNSKYKAK----VT--VD----------------PKIKINVAPSDLSFKSLKEKQSFVVTVSG 377 (497)
Q Consensus 323 ~~~t~~~tvtN~g~~~~ty~~~----v~--~~----------------~g~~v~vsp~~lt~~~~g~s~~~~Vt~~~ 377 (497)
.+.+++++|||.|+.+....-- +. .| .| ++|+|++= + .+||+++++|+++-
T Consensus 263 R~l~~~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~g--L~vs~~~p-I-~PGETrtl~V~a~d 335 (381)
T PF04744_consen 263 RTLTMTLTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERG--LSVSDNSP-I-APGETRTLTVEAQD 335 (381)
T ss_dssp SEEEEEEEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT---EEES--S--B--TT-EEEEEEEEE-
T ss_pred cEEEEEEEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCc--ceeCCCCC-c-CCCceEEEEEEeeh
Confidence 5788899999999976433221 11 11 13 44566542 2 68999999998864
No 81
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=35.12 E-value=1.2e+02 Score=26.10 Aligned_cols=50 Identities=16% Similarity=0.206 Sum_probs=28.3
Q ss_pred ceEEEEEEEEecCCCCeEEEEEEe---c----------CCCeEEEEe-CCeEEEeeCCcEEEEEE
Q 037246 323 FAVNFSRTVTNVGQGNSKYKAKVT---V----------DPKIKINVA-PSDLSFKSLKEKQSFVV 373 (497)
Q Consensus 323 ~~~t~~~tvtN~g~~~~ty~~~v~---~----------~~g~~v~vs-p~~lt~~~~g~s~~~~V 373 (497)
+..+.+++|+|.||.+...-.... . .-|..+.+- -..+.| .+|+++++++
T Consensus 18 gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRF-EPG~~k~V~L 81 (101)
T TIGR00192 18 GRKTVSVKVKNTGDRPIQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRF-EPGEEKSVEL 81 (101)
T ss_pred CCcEEEEEEEeCCCcceEEccccchhhcCcceeecHhhhcCcccccCCCCeEeE-CCCCeEEEEE
Confidence 457788999999997643222111 1 013333331 224566 6799888766
No 82
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=33.17 E-value=38 Score=33.06 Aligned_cols=44 Identities=9% Similarity=0.180 Sum_probs=30.4
Q ss_pred cccccCcEEEeccCCCCCCc----cee-eecCceeEecCCCccccccee
Q 037246 397 YNVRSPIVLYTNKGDSDPTS----ATV-SSVAPCVLTLGASHVDCQIVD 440 (497)
Q Consensus 397 ~av~~pI~V~~~agn~gp~~----~~v-~n~aPw~~tv~Ast~dr~~~~ 440 (497)
..++.++++++++||.+... ... ....||+++||+.+-+.+...
T Consensus 143 ~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~~~~~~~ 191 (259)
T cd07473 143 RAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDSNDALAS 191 (259)
T ss_pred HHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCCCCCcCc
Confidence 45566999999999998651 111 223589999999976654443
No 83
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=32.93 E-value=2.7e+02 Score=23.31 Aligned_cols=55 Identities=15% Similarity=0.133 Sum_probs=35.0
Q ss_pred ceEEEEEEEEecCCCC-eEEEEE-----EecCCCe---EEEEeCCeEEEeeCCcEEEEEEEEEecc
Q 037246 323 FAVNFSRTVTNVGQGN-SKYKAK-----VTVDPKI---KINVAPSDLSFKSLKEKQSFVVTVSGVG 379 (497)
Q Consensus 323 ~~~t~~~tvtN~g~~~-~ty~~~-----v~~~~g~---~v~vsp~~lt~~~~g~s~~~~Vt~~~~~ 379 (497)
...++.++++|..+.. .+-++. ++. .|+ .+......+++ ++|++.++++++....
T Consensus 15 ~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~y-tG~~~~~~~~~~~~~~l-~p~~~~~~~~~i~p~~ 78 (107)
T PF00927_consen 15 QDFTVSVSFTNPSSEPLRNVSLNLCAFTVEY-TGLTRDQFKKEKFEVTL-KPGETKSVEVTITPSQ 78 (107)
T ss_dssp SEEEEEEEEEE-SSS-EECEEEEEEEEEEEC-TTTEEEEEEEEEEEEEE--TTEEEEEEEEE-HHS
T ss_pred CCEEEEEEEEeCCcCccccceeEEEEEEEEE-CCcccccEeEEEcceee-CCCCEEEEEEEEEcee
Confidence 5788889999998877 442222 232 354 34555566777 7899999999998865
No 84
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=32.91 E-value=1.3e+02 Score=25.86 Aligned_cols=50 Identities=12% Similarity=0.187 Sum_probs=24.8
Q ss_pred ceEEEEEEEEecCCCCeEEEEEE---ec-C---------CCeEEEEe-CCeEEEeeCCcEEEEEE
Q 037246 323 FAVNFSRTVTNVGQGNSKYKAKV---TV-D---------PKIKINVA-PSDLSFKSLKEKQSFVV 373 (497)
Q Consensus 323 ~~~t~~~tvtN~g~~~~ty~~~v---~~-~---------~g~~v~vs-p~~lt~~~~g~s~~~~V 373 (497)
+..+.+++|+|+||.+...-... +. + -|..+.+- -..+.| .+|+++++++
T Consensus 17 gr~~~~l~V~N~GDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIPaGTavRF-EPG~~k~V~L 80 (100)
T PF00699_consen 17 GRERITLEVTNTGDRPIQVGSHYHFFEVNPALEFDREAAYGMRLDIPAGTAVRF-EPGDTKEVEL 80 (100)
T ss_dssp TSEEEEEEEEE-SSS-EEEETTS-GGGS-TTEES-HHHHTTEEE-SSTT-EEEE--TT-EEEEEE
T ss_pred CCcEEEEEEEeCCCcceEEccccCHHHHhHHhhhhHHHhCCcccCcCCCCeEEE-CCCCcEEEEE
Confidence 56888899999999764322111 00 0 13333331 123556 6788888766
No 85
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=32.77 E-value=36 Score=33.89 Aligned_cols=37 Identities=24% Similarity=0.307 Sum_probs=29.1
Q ss_pred cCcEEEeccCCCCCCcc---eeeecCceeEecCCCccccc
Q 037246 401 SPIVLYTNKGDSDPTSA---TVSSVAPCVLTLGASHVDCQ 437 (497)
Q Consensus 401 ~pI~V~~~agn~gp~~~---~v~n~aPw~~tv~Ast~dr~ 437 (497)
.++++++++||.+.... ..-...|++++|||.+.+..
T Consensus 146 ~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~ 185 (293)
T cd04842 146 PDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSV 185 (293)
T ss_pred CCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCc
Confidence 67899999999987654 33455689999999987765
No 86
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=32.26 E-value=28 Score=35.05 Aligned_cols=40 Identities=18% Similarity=0.375 Sum_probs=28.9
Q ss_pred cccc-CcEEEeccCCCCCCccee-eecCceeEecCCCccccc
Q 037246 398 NVRS-PIVLYTNKGDSDPTSATV-SSVAPCVLTLGASHVDCQ 437 (497)
Q Consensus 398 av~~-pI~V~~~agn~gp~~~~v-~n~aPw~~tv~Ast~dr~ 437 (497)
+++. ++++++++||+++..... -...|++++|||.+-+.+
T Consensus 118 a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~ 159 (275)
T cd05562 118 VVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNT 159 (275)
T ss_pred HHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCC
Confidence 4454 999999999999843222 234589999999976554
No 87
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=32.26 E-value=37 Score=33.06 Aligned_cols=38 Identities=16% Similarity=0.199 Sum_probs=28.5
Q ss_pred cCcEEEeccCCCCCCcceeeecCceeEecCCCcccccc
Q 037246 401 SPIVLYTNKGDSDPTSATVSSVAPCVLTLGASHVDCQI 438 (497)
Q Consensus 401 ~pI~V~~~agn~gp~~~~v~n~aPw~~tv~Ast~dr~~ 438 (497)
.++++++++||.+......-...|++++|||.+-+.+.
T Consensus 127 ~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~ 164 (254)
T cd07490 127 TGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDED 164 (254)
T ss_pred CCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCc
Confidence 48899999999987644444456899999998765443
No 88
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=31.21 E-value=39 Score=33.84 Aligned_cols=31 Identities=13% Similarity=0.215 Sum_probs=29.7
Q ss_pred cCccCCCCCCCeEEEEeeceecCCCCCCCCC
Q 037246 49 TVKRNPSVESDIVIGVLDSGIWPELESFNDE 79 (497)
Q Consensus 49 ~~w~~~~~G~gV~VaVlDTGI~~~Hp~f~~~ 79 (497)
.+|+.+.+|+||+||||||||+.+||+|.++
T Consensus 30 ~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~ 60 (297)
T cd04059 30 PAWEQGITGKGVTVAVVDDGLEITHPDLKDN 60 (297)
T ss_pred HHHhCCCCCcceEEEEEeCCcccCCHhHhhc
Confidence 7999999999999999999999999999876
No 89
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=31.13 E-value=48 Score=32.91 Aligned_cols=31 Identities=13% Similarity=0.190 Sum_probs=29.4
Q ss_pred cCccCCCCCCCeEEEEeeceecCCCCCCCCC
Q 037246 49 TVKRNPSVESDIVIGVLDSGIWPELESFNDE 79 (497)
Q Consensus 49 ~~w~~~~~G~gV~VaVlDTGI~~~Hp~f~~~ 79 (497)
.+|..+.+|+||+|+|||||||++||+|.+.
T Consensus 1 ~aw~~g~~G~gv~IaviDtGid~~Hp~~~~~ 31 (273)
T cd07485 1 AAWEFGTGGPGIIVAVVDTGVDGTHPDLQGN 31 (273)
T ss_pred CccccccCCCCcEEEEEeCCCCCCChhhccC
Confidence 4799999999999999999999999999976
No 90
>PLN03080 Probable beta-xylosidase; Provisional
Probab=30.89 E-value=1.1e+02 Score=35.83 Aligned_cols=53 Identities=17% Similarity=0.096 Sum_probs=32.1
Q ss_pred eEEEEEEEEecCCCCeEEEEE--EecCCC-----eEEEEeCCeEEEeeCCcEEEEEEEEEe
Q 037246 324 AVNFSRTVTNVGQGNSKYKAK--VTVDPK-----IKINVAPSDLSFKSLKEKQSFVVTVSG 377 (497)
Q Consensus 324 ~~t~~~tvtN~g~~~~ty~~~--v~~~~g-----~~v~vsp~~lt~~~~g~s~~~~Vt~~~ 377 (497)
..+++++|||+|+-...-.+. +..|.+ ++--+--+.+.+ ++||+++++++++.
T Consensus 685 ~~~v~v~VtNtG~~~G~evvQlYv~~p~~~~~~P~k~L~gF~kv~L-~~Ges~~V~~~l~~ 744 (779)
T PLN03080 685 RFNVHISVSNVGEMDGSHVVMLFSRSPPVVPGVPEKQLVGFDRVHT-ASGRSTETEIVVDP 744 (779)
T ss_pred eEEEEEEEEECCcccCcEEEEEEEecCccCCCCcchhccCcEeEee-CCCCEEEEEEEeCc
Confidence 478999999999865433333 222321 111112234455 78999998888876
No 91
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=30.70 E-value=31 Score=23.54 Aligned_cols=13 Identities=23% Similarity=0.358 Sum_probs=10.8
Q ss_pred hhHHHHHHHhhhh
Q 037246 202 VACSHVTGAAAYV 214 (497)
Q Consensus 202 mAaP~VAGiaALl 214 (497)
.|||.+||+++-+
T Consensus 14 LAAP~iagIi~s~ 26 (35)
T PF13940_consen 14 LAAPIIAGIIASL 26 (35)
T ss_pred hHhHHHHHHHHHH
Confidence 5899999998744
No 92
>PRK13202 ureB urease subunit beta; Reviewed
Probab=30.45 E-value=1.6e+02 Score=25.38 Aligned_cols=48 Identities=10% Similarity=0.201 Sum_probs=27.2
Q ss_pred EEEEEEEEecCCCCeEEEEEE---ecC----------CCeEEEEe-CCeEEEeeCCcEEEEEE
Q 037246 325 VNFSRTVTNVGQGNSKYKAKV---TVD----------PKIKINVA-PSDLSFKSLKEKQSFVV 373 (497)
Q Consensus 325 ~t~~~tvtN~g~~~~ty~~~v---~~~----------~g~~v~vs-p~~lt~~~~g~s~~~~V 373 (497)
.+.+++|+|+||.+...-... +.. -|..+.+- -..+.| .+|+++++++
T Consensus 21 ~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRF-EPG~~k~V~L 82 (104)
T PRK13202 21 SRLQMRIINAGDRPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRF-EPGIPQIVGL 82 (104)
T ss_pred ceEEEEEEeCCCCceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEE-CCCCeEEEEE
Confidence 677899999999764322211 111 13333331 224566 6788888766
No 93
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=30.37 E-value=33 Score=33.81 Aligned_cols=39 Identities=18% Similarity=0.280 Sum_probs=27.6
Q ss_pred ccccCcEEEeccCCCCCCc---ceeeecCceeEecCCCcccc
Q 037246 398 NVRSPIVLYTNKGDSDPTS---ATVSSVAPCVLTLGASHVDC 436 (497)
Q Consensus 398 av~~pI~V~~~agn~gp~~---~~v~n~aPw~~tv~Ast~dr 436 (497)
+...++++++++||.+... ...-...||+++|||..-+.
T Consensus 143 a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~~~ 184 (261)
T cd07493 143 AASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDANG 184 (261)
T ss_pred HHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEeccCC
Confidence 4567899999999998652 11223458999999976543
No 94
>PRK13201 ureB urease subunit beta; Reviewed
Probab=29.15 E-value=1.5e+02 Score=26.71 Aligned_cols=50 Identities=10% Similarity=0.147 Sum_probs=28.1
Q ss_pred ceEEEEEEEEecCCCCeEEEEEEe---cC----------CCeEEEEe-CCeEEEeeCCcEEEEEE
Q 037246 323 FAVNFSRTVTNVGQGNSKYKAKVT---VD----------PKIKINVA-PSDLSFKSLKEKQSFVV 373 (497)
Q Consensus 323 ~~~t~~~tvtN~g~~~~ty~~~v~---~~----------~g~~v~vs-p~~lt~~~~g~s~~~~V 373 (497)
+..+.+++|+|+|+.+...-.... .. -|..+.+- -..+.| .+|+++++++
T Consensus 18 gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRF-EPG~~k~V~L 81 (136)
T PRK13201 18 HHPETVIEVENTGDRPIQVGSHFHFYEANAALDFEREMAYGKHLDIPAGAAVRF-EPGDKKEVQL 81 (136)
T ss_pred CCCEEEEEEEeCCCcceEeccccchhhcCccccccHhhhcCcccccCCCCeEeE-CCCCeEEEEE
Confidence 457788999999997643222211 10 13333331 123556 6788888766
No 95
>PRK13205 ureB urease subunit beta; Reviewed
Probab=29.05 E-value=1.5e+02 Score=27.40 Aligned_cols=50 Identities=6% Similarity=0.124 Sum_probs=28.5
Q ss_pred ceEEEEEEEEecCCCCeEEEEEEe---cC----------CCeEEEEe-CCeEEEeeCCcEEEEEE
Q 037246 323 FAVNFSRTVTNVGQGNSKYKAKVT---VD----------PKIKINVA-PSDLSFKSLKEKQSFVV 373 (497)
Q Consensus 323 ~~~t~~~tvtN~g~~~~ty~~~v~---~~----------~g~~v~vs-p~~lt~~~~g~s~~~~V 373 (497)
+..+++++|+|+|+.+...-.... .. -|..+.+- -..+.| .+|+++++++
T Consensus 18 GR~~i~L~V~NtGDRPIQVGSHyHF~EvN~AL~FDR~~A~G~RLdIPAGTAVRF-EPGe~ktV~L 81 (162)
T PRK13205 18 GREAKTIEIINTGDRPVQIGSHFHFAEVNPSISFDRSEGYGFRLDIPSGTAVRL-EPGDARTVNL 81 (162)
T ss_pred CCcEEEEEEEeCCCCceEeccccchhhcCccccccHHHhcCcccccCCCCeEeE-CCCCeEEEEE
Confidence 567788999999997643222211 10 13333331 123566 6788888766
No 96
>PRK15019 CsdA-binding activator; Provisional
Probab=28.92 E-value=38 Score=31.11 Aligned_cols=32 Identities=16% Similarity=0.123 Sum_probs=26.6
Q ss_pred EecccchhHHHHHHHhhhhhccCCCCCHHHHHH
Q 037246 196 ILSGTSVACSHVTGAAAYVKSFHPDWSPSSIKS 228 (497)
Q Consensus 196 ~~sGTSmAaP~VAGiaALl~s~~p~lsp~~ik~ 228 (497)
.+.|.| =|++|-|.+||+.+.+-+.+|+||.+
T Consensus 78 ~f~~dS-DA~IvkGl~alL~~~~~g~tp~eIl~ 109 (147)
T PRK15019 78 HFFGDS-EGRIVRGLLAVLLTAVEGKTAAELQA 109 (147)
T ss_pred EEEeeC-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 344555 47899999999999999999999865
No 97
>TIGR03391 FeS_syn_CsdE cysteine desulfurase, sulfur acceptor subunit CsdE. Members of this protein family are CsdE, formerly called YgdK. This protein, found as a paralog to SufE in Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, works together and physically interacts with CsdA (a paralog of SufS). CsdA has cysteine desulfurase activity that is enhanced by this protein (CsdE), in which Cys-61 (numbered as in E. coli) is a sulfur acceptor site. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=28.65 E-value=37 Score=30.82 Aligned_cols=34 Identities=18% Similarity=0.130 Sum_probs=27.8
Q ss_pred EEecccchhHHHHHHHhhhhhccCCCCCHHHHHHH
Q 037246 195 SILSGTSVACSHVTGAAAYVKSFHPDWSPSSIKSA 229 (497)
Q Consensus 195 ~~~sGTSmAaP~VAGiaALl~s~~p~lsp~~ik~~ 229 (497)
-.+.|.| =|++|-|++||+.+.+-+.+|++|.+.
T Consensus 72 ~~f~~dS-Da~IvkGl~alL~~~~~g~tp~eI~~~ 105 (138)
T TIGR03391 72 LHFYGDS-EGRIVRGLLAVLLTAVEGKTPEQLLAQ 105 (138)
T ss_pred EEEEecC-ccHHHHHHHHHHHHHHcCCCHHHHHHC
Confidence 3455666 478999999999999999999998643
No 98
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=28.64 E-value=42 Score=32.85 Aligned_cols=41 Identities=17% Similarity=0.290 Sum_probs=28.6
Q ss_pred cccccCcEEEeccCCCCCCcce-eeecCceeEecCCCccccc
Q 037246 397 YNVRSPIVLYTNKGDSDPTSAT-VSSVAPCVLTLGASHVDCQ 437 (497)
Q Consensus 397 ~av~~pI~V~~~agn~gp~~~~-v~n~aPw~~tv~Ast~dr~ 437 (497)
.+.++++++++++||+++.... .-...|.+++|+|.+.+.+
T Consensus 115 ~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~~~~ 156 (239)
T cd05561 115 AAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDARGR 156 (239)
T ss_pred HHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeecCCCC
Confidence 4567889999999999874322 2223478899998765543
No 99
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=27.99 E-value=1.5e+02 Score=34.64 Aligned_cols=55 Identities=16% Similarity=0.077 Sum_probs=33.6
Q ss_pred ceEEEEEEEEecCCCCeEEEEE--EecCCCeEEE------EeCCeEEEeeCCcEEEEEEEEEecc
Q 037246 323 FAVNFSRTVTNVGQGNSKYKAK--VTVDPKIKIN------VAPSDLSFKSLKEKQSFVVTVSGVG 379 (497)
Q Consensus 323 ~~~t~~~tvtN~g~~~~ty~~~--v~~~~g~~v~------vsp~~lt~~~~g~s~~~~Vt~~~~~ 379 (497)
...+++++|+|+|+-+..-.+. +..|.+- +. .--+.+.+ ++||+++++++++...
T Consensus 667 ~~i~v~v~V~NtG~~~G~EVvQlYv~~~~~~-~~~P~k~L~gF~Kv~L-~pGes~~V~~~l~~~~ 729 (765)
T PRK15098 667 GKVTASVTVTNTGKREGATVVQLYLQDVTAS-MSRPVKELKGFEKIML-KPGETQTVSFPIDIEA 729 (765)
T ss_pred CeEEEEEEEEECCCCCccEEEEEeccCCCCC-CCCHHHhccCceeEeE-CCCCeEEEEEeecHHH
Confidence 4688999999999855332222 2233221 10 11123455 8999999998888765
No 100
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=27.80 E-value=4.3e+02 Score=25.83 Aligned_cols=53 Identities=11% Similarity=-0.059 Sum_probs=35.4
Q ss_pred ceEEEEEEEEecCCCCeEEEEEEecC---CCeEEEEeCCeEEEeeCCcEEEEEEEEE
Q 037246 323 FAVNFSRTVTNVGQGNSKYKAKVTVD---PKIKINVAPSDLSFKSLKEKQSFVVTVS 376 (497)
Q Consensus 323 ~~~t~~~tvtN~g~~~~ty~~~v~~~---~g~~v~vsp~~lt~~~~g~s~~~~Vt~~ 376 (497)
.....+++|+|.++.+......++.. ....+-|+|..+++ .+|+++.++|...
T Consensus 38 ~~~~~si~v~N~~~~p~lvQ~wv~~~~~~~~~~fivtPPl~rl-~pg~~q~vRii~~ 93 (230)
T PRK09918 38 SDGEGSINVKNTDSNPILLYTTLVDLPEDKSKLLLVTPPVARV-EPGQSQQVRFILK 93 (230)
T ss_pred CCCeEEEEEEcCCCCcEEEEEEEecCCCCCCCCEEEcCCeEEE-CCCCceEEEEEEC
Confidence 34566688899887543222223221 12357889999999 7899999988765
No 101
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=27.80 E-value=38 Score=33.06 Aligned_cols=40 Identities=28% Similarity=0.347 Sum_probs=30.1
Q ss_pred ccccCcEEEeccCCCCCCcce--eeecCceeEecCCCccccc
Q 037246 398 NVRSPIVLYTNKGDSDPTSAT--VSSVAPCVLTLGASHVDCQ 437 (497)
Q Consensus 398 av~~pI~V~~~agn~gp~~~~--v~n~aPw~~tv~Ast~dr~ 437 (497)
+.+.++++++++||.+..... .-...|.+++|||.+.+..
T Consensus 134 ~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~ 175 (264)
T cd07487 134 LWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP 175 (264)
T ss_pred HHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC
Confidence 456789999999999876642 2334589999999876654
No 102
>PF13598 DUF4139: Domain of unknown function (DUF4139)
Probab=27.78 E-value=3.1e+02 Score=27.75 Aligned_cols=26 Identities=12% Similarity=0.075 Sum_probs=17.0
Q ss_pred ceEEEEEEEEecCCCCeEEEEEEecC
Q 037246 323 FAVNFSRTVTNVGQGNSKYKAKVTVD 348 (497)
Q Consensus 323 ~~~t~~~tvtN~g~~~~ty~~~v~~~ 348 (497)
....++++|+|..+.+.+-.+....|
T Consensus 242 ~~~~~~itv~N~~~~~v~v~v~d~iP 267 (317)
T PF13598_consen 242 RTYEYTITVRNNKDEPVTVTVEDQIP 267 (317)
T ss_pred EEEEEEEEEECCCCCCEEEEEEeCCC
Confidence 45677778888887766655544433
No 103
>PRK09296 cysteine desufuration protein SufE; Provisional
Probab=26.46 E-value=43 Score=30.42 Aligned_cols=32 Identities=28% Similarity=0.310 Sum_probs=26.9
Q ss_pred EecccchhHHHHHHHhhhhhccCCCCCHHHHHH
Q 037246 196 ILSGTSVACSHVTGAAAYVKSFHPDWSPSSIKS 228 (497)
Q Consensus 196 ~~sGTSmAaP~VAGiaALl~s~~p~lsp~~ik~ 228 (497)
.+.|-| =|++|-|++||+.+.+-..+|+||.+
T Consensus 68 ~f~~dS-Da~ivkGl~alL~~~~~g~tp~eIl~ 99 (138)
T PRK09296 68 ELQGDS-DAAIVKGLIAVVFILYQQMTPQDIVN 99 (138)
T ss_pred EEEEec-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 444555 58899999999999999999999864
No 104
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=26.40 E-value=50 Score=32.27 Aligned_cols=43 Identities=23% Similarity=0.352 Sum_probs=31.2
Q ss_pred ccccCcEEEeccCCCCCCcc-eeeecCceeEecCCCccccccee
Q 037246 398 NVRSPIVLYTNKGDSDPTSA-TVSSVAPCVLTLGASHVDCQIVD 440 (497)
Q Consensus 398 av~~pI~V~~~agn~gp~~~-~v~n~aPw~~tv~Ast~dr~~~~ 440 (497)
+.+.++++++++||.+.... ..-...|++++|||.+.+.....
T Consensus 142 ~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~~~~~~~ 185 (255)
T cd04077 142 AVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDSDDARAS 185 (255)
T ss_pred HHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCCCCCccC
Confidence 45679999999999987542 22345689999999977765333
No 105
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=25.91 E-value=56 Score=30.56 Aligned_cols=38 Identities=18% Similarity=0.362 Sum_probs=30.4
Q ss_pred cCcEEEeccCCCCCCcc---eeeecCceeEecCCCcccccc
Q 037246 401 SPIVLYTNKGDSDPTSA---TVSSVAPCVLTLGASHVDCQI 438 (497)
Q Consensus 401 ~pI~V~~~agn~gp~~~---~v~n~aPw~~tv~Ast~dr~~ 438 (497)
.++++++++||.+.... ..-...|++++||+.+.+...
T Consensus 131 ~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~~~ 171 (241)
T cd00306 131 LGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDGTP 171 (241)
T ss_pred cCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCCCc
Confidence 38999999999987665 355677999999999876554
No 106
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=25.78 E-value=50 Score=38.86 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=21.1
Q ss_pred CCCCCCeEEEEeeceecCCCCCCC
Q 037246 54 PSVESDIVIGVLDSGIWPELESFN 77 (497)
Q Consensus 54 ~~~G~gV~VaVlDTGI~~~Hp~f~ 77 (497)
.+.|.||+|||+||||||.-|-++
T Consensus 77 eYDGRgV~IaIlDtGvDP~apGl~ 100 (1304)
T KOG1114|consen 77 EYDGRGVTIAILDTGVDPSAPGLQ 100 (1304)
T ss_pred CCCCCceEEEEeecCCCCCCCCce
Confidence 578999999999999999988554
No 107
>PRK13204 ureB urease subunit beta; Reviewed
Probab=25.57 E-value=1.9e+02 Score=26.84 Aligned_cols=50 Identities=12% Similarity=0.216 Sum_probs=28.4
Q ss_pred ceEEEEEEEEecCCCCeEEEEEEe---cC----------CCeEEEEe-CCeEEEeeCCcEEEEEE
Q 037246 323 FAVNFSRTVTNVGQGNSKYKAKVT---VD----------PKIKINVA-PSDLSFKSLKEKQSFVV 373 (497)
Q Consensus 323 ~~~t~~~tvtN~g~~~~ty~~~v~---~~----------~g~~v~vs-p~~lt~~~~g~s~~~~V 373 (497)
+..+++++|+|+|+.+...-..+. .. -|..+.+- -..+.| .+|+++++++
T Consensus 41 gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRF-EPG~~k~V~L 104 (159)
T PRK13204 41 GRPRTTLTVRNTGDRPIQIGSHFHFFEVNRYLEFDRSKAFGLRLDIPANTAVRF-EPGDEKEVTL 104 (159)
T ss_pred CCcEEEEEEEeCCCCceEeccccchhhcCccccccHhhhcCcccccCCCCeEeE-CCCCeeEEEE
Confidence 567788999999997643222111 10 13333331 123566 6788888766
No 108
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=25.20 E-value=54 Score=32.75 Aligned_cols=44 Identities=11% Similarity=0.188 Sum_probs=30.9
Q ss_pred cccccCcEEEeccCCCCCCc-ceeeecCceeEecCCCccccccee
Q 037246 397 YNVRSPIVLYTNKGDSDPTS-ATVSSVAPCVLTLGASHVDCQIVD 440 (497)
Q Consensus 397 ~av~~pI~V~~~agn~gp~~-~~v~n~aPw~~tv~Ast~dr~~~~ 440 (497)
.+.+.++++++++||.+... ...-...|.+++|||.+.+.+...
T Consensus 161 ~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~~~~~~ 205 (285)
T cd07496 161 DVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDLRGQRAS 205 (285)
T ss_pred HHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCCCCCccc
Confidence 34467999999999998764 112233478999999987765433
No 109
>PRK15295 fimbrial assembly chaperone SthB; Provisional
Probab=24.80 E-value=6.2e+02 Score=24.72 Aligned_cols=56 Identities=21% Similarity=0.149 Sum_probs=37.0
Q ss_pred ceEEEEEEEEecCCCCeEEEEE--EecCC-----CeEEEEeCCeEEEeeCCcEEEEEEEEEeccCC
Q 037246 323 FAVNFSRTVTNVGQGNSKYKAK--VTVDP-----KIKINVAPSDLSFKSLKEKQSFVVTVSGVGLK 381 (497)
Q Consensus 323 ~~~t~~~tvtN~g~~~~ty~~~--v~~~~-----g~~v~vsp~~lt~~~~g~s~~~~Vt~~~~~~~ 381 (497)
.....+++|+|.++.+ |-+. ++... ...+-++|.-+++ .+|+.+.++|......++
T Consensus 33 ~~~~~si~i~N~~~~p--~LvQsWv~~~~~~~~~~~pFivtPPl~rl-~p~~~q~lRI~~~~~~LP 95 (226)
T PRK15295 33 NNDESSINVENKDSKA--NLVQSWLSVVDPQVTNKQAFIITPPLFRL-DAGQKNSIRVIRSGAPLP 95 (226)
T ss_pred CCceeEEEEEeCCCCc--EEEEEEEeCCCCCCCCCCCEEEcCCeEEE-CCCCceEEEEEECCCCCC
Confidence 3466678889988754 4432 22111 2347789999999 789999999876543333
No 110
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=24.55 E-value=2.2e+02 Score=21.11 Aligned_cols=38 Identities=13% Similarity=0.162 Sum_probs=23.3
Q ss_pred ceEEEEEEEEecCCCCeE-EEEEEecCCCeEEEEeCCeEEE
Q 037246 323 FAVNFSRTVTNVGQGNSK-YKAKVTVDPKIKINVAPSDLSF 362 (497)
Q Consensus 323 ~~~t~~~tvtN~g~~~~t-y~~~v~~~~g~~v~vsp~~lt~ 362 (497)
...+++++++|.|....+ ..+.=..|.|+.. .|.++++
T Consensus 12 d~v~Yti~v~N~g~~~a~~v~v~D~lP~g~~~--v~~S~~~ 50 (53)
T TIGR01451 12 DTITYTITVTNNGNVPATNVVVTDILPSGTTF--VSNSVTV 50 (53)
T ss_pred CEEEEEEEEEECCCCceEeEEEEEcCCCCCEE--EeCcEEE
Confidence 478899999999987654 2222234566543 3555544
No 111
>PRK15211 fimbrial chaperone protein PefD; Provisional
Probab=24.39 E-value=6.2e+02 Score=24.86 Aligned_cols=56 Identities=23% Similarity=0.212 Sum_probs=37.3
Q ss_pred ceEEEEEEEEecCCCCeEEEEE--EecCC----CeEEEEeCCeEEEeeCCcEEEEEEEEEeccCC
Q 037246 323 FAVNFSRTVTNVGQGNSKYKAK--VTVDP----KIKINVAPSDLSFKSLKEKQSFVVTVSGVGLK 381 (497)
Q Consensus 323 ~~~t~~~tvtN~g~~~~ty~~~--v~~~~----g~~v~vsp~~lt~~~~g~s~~~~Vt~~~~~~~ 381 (497)
.....+++|+|.++.+ |-+. ++... ..-+-|+|.-+++ .+|+.+.++|......++
T Consensus 36 ~~~~~si~i~N~~~~p--~LvQswv~~~~~~~~~~pFivtPPlfrl-~p~~~q~lRI~~~~~~LP 97 (229)
T PRK15211 36 GRKNISFEVTNQADQT--YGGQVWIDNTTQGSSTVYMVPAPPFFKV-RPKEKQIIRIMKTDSALP 97 (229)
T ss_pred CCceEEEEEEeCCCCc--EEEEEEEecCCCCCccCCEEEcCCeEEE-CCCCceEEEEEECCCCCC
Confidence 3456678889988764 4443 32211 1347789999999 789999999876644333
No 112
>PF02657 SufE: Fe-S metabolism associated domain; InterPro: IPR003808 This entry represents the core domain of SufE and related proteins. This domain of SufE shows strong structural similarity to IscU, and the sulfur-acceptor site in SufE coincides with the location of the cysteine residues mediating Fe-S cluster assembly in IscU. Thus, a conserved core structure is implicated in mediating the interactions of both SufE and IscU with the mutually homologous cysteine desulfurase enzymes present in their respective operons [].; PDB: 1MZG_B 1WLO_A 3G0M_A 1NI7_A.
Probab=23.91 E-value=54 Score=29.13 Aligned_cols=33 Identities=18% Similarity=0.127 Sum_probs=26.3
Q ss_pred EecccchhHHHHHHHhhhhhccCCCCCHHHHHHH
Q 037246 196 ILSGTSVACSHVTGAAAYVKSFHPDWSPSSIKSA 229 (497)
Q Consensus 196 ~~sGTSmAaP~VAGiaALl~s~~p~lsp~~ik~~ 229 (497)
.+.|.|= |+.|-|++||+.+.+-+.+|+||.+.
T Consensus 59 ~f~adSd-a~ivkGl~all~~~~~g~t~~eI~~~ 91 (125)
T PF02657_consen 59 HFRADSD-ARIVKGLLALLLEVLNGQTPEEILAF 91 (125)
T ss_dssp EEEEEES-SHHHHHHHHHHHHHTTT-BHHHHHHS
T ss_pred EEEecCc-cHHHHHHHHHHHHHHcCCCHHHHHhC
Confidence 4556665 56999999999999999999998654
No 113
>PRK15192 fimbrial chaperone BcfG; Provisional
Probab=23.69 E-value=5.8e+02 Score=25.18 Aligned_cols=56 Identities=20% Similarity=0.245 Sum_probs=37.3
Q ss_pred ceEEEEEEEEecCCCCeEEEEEEec----------C--CCeEEEEeCCeEEEeeCCcEEEEEEEEEeccCC
Q 037246 323 FAVNFSRTVTNVGQGNSKYKAKVTV----------D--PKIKINVAPSDLSFKSLKEKQSFVVTVSGVGLK 381 (497)
Q Consensus 323 ~~~t~~~tvtN~g~~~~ty~~~v~~----------~--~g~~v~vsp~~lt~~~~g~s~~~~Vt~~~~~~~ 381 (497)
.....+++|+|.++.+ |-+.... + ...-+.++|.-+.+ .+++.+.++|......++
T Consensus 36 ~~k~~sv~l~N~~~~p--~LvQswv~~~~~w~~~~~~~~~~PFivtPPlfrl-~p~~~~~lRI~~~~~~LP 103 (234)
T PRK15192 36 GAPALSVPVSNHSEAS--WLIDTHILPGGRWPGTKNEGNITPFVVTPPLFML-SARQENSMRVVYTGAPLP 103 (234)
T ss_pred CCceEEEEEEeCCCCc--EEEEEEeccCccccccCCccccCCEEEcCCeEEE-CCCCceEEEEEECCCCCC
Confidence 4567778899988754 4443310 0 01236789999999 789999999877654333
No 114
>PRK13198 ureB urease subunit beta; Reviewed
Probab=23.65 E-value=2.1e+02 Score=26.42 Aligned_cols=50 Identities=12% Similarity=0.152 Sum_probs=28.3
Q ss_pred ceEEEEEEEEecCCCCeEEEEEE---ec----------CCCeEEEEe-CCeEEEeeCCcEEEEEE
Q 037246 323 FAVNFSRTVTNVGQGNSKYKAKV---TV----------DPKIKINVA-PSDLSFKSLKEKQSFVV 373 (497)
Q Consensus 323 ~~~t~~~tvtN~g~~~~ty~~~v---~~----------~~g~~v~vs-p~~lt~~~~g~s~~~~V 373 (497)
+..+.+++|+|+|+.+...-... +. .-|..+.+- -..+.| .+|+++++++
T Consensus 46 gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRF-EPG~~k~V~L 109 (158)
T PRK13198 46 NKPVTKVKVRNTGDRPIQVGSHFHFFEVNRALEFDRAAAYGKRLNISSTTAIRF-EPGDETEVPL 109 (158)
T ss_pred CCcEEEEEEEeCCCCceEeccccchhhcCccccccHhhhcCcccccCCCCeEee-CCCCeeEEEE
Confidence 56778899999999764322211 11 013333331 123556 6788888766
No 115
>PF02368 Big_2: Bacterial Ig-like domain (group 2); InterPro: IPR003343 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins as well as in some uncharacterised eukaryote proteins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 3NCX_B 3NCW_D 4AQ1_A 2ZQK_B 2ZWK_C 1F02_I 1E5U_I 1F00_I 2L04_A.
Probab=23.52 E-value=76 Score=25.20 Aligned_cols=38 Identities=18% Similarity=0.462 Sum_probs=29.6
Q ss_pred EEEEeCCeEEEeeCCcEEEEEEEEEeccCCCCCceeeEEEEEcC
Q 037246 352 KINVAPSDLSFKSLKEKQSFVVTVSGVGLKENSMVSASLVWSDG 395 (497)
Q Consensus 352 ~v~vsp~~lt~~~~g~s~~~~Vt~~~~~~~~~~~~~G~i~~~~~ 395 (497)
+|++.|..+++ ..|++..|++++....... ..+.|...
T Consensus 4 ~I~i~~~~~~l-~~G~~~~l~~~~~~~~~~~-----~~v~w~ss 41 (79)
T PF02368_consen 4 SITITPTSVTL-KVGQTQQLTATVTPSDGSN-----SKVTWSSS 41 (79)
T ss_dssp SEEETTTEEEC-ETTCEETTEEEEEEEESTT-----SCEEEEES
T ss_pred EEEEECCEEEE-ECCCEEEEEEEEEECCCcE-----eEEEEEeC
Confidence 47788999998 7899999999988876332 66778753
No 116
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=23.06 E-value=55 Score=32.61 Aligned_cols=36 Identities=33% Similarity=0.604 Sum_probs=27.2
Q ss_pred ccccCcEEEeccCCCCCCccee--eecCceeEecCCCc
Q 037246 398 NVRSPIVLYTNKGDSDPTSATV--SSVAPCVLTLGASH 433 (497)
Q Consensus 398 av~~pI~V~~~agn~gp~~~~v--~n~aPw~~tv~Ast 433 (497)
+.+.++++++++||.+...... -...|++++|||.+
T Consensus 145 ~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~ 182 (295)
T cd07474 145 AVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGAST 182 (295)
T ss_pred HHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeee
Confidence 4567899999999998755444 23458999999965
No 117
>COG2166 sufE Cysteine desulfurase SufE subunit [Posttranslational modification, protein turnover, chaperones]
Probab=22.95 E-value=51 Score=30.19 Aligned_cols=34 Identities=18% Similarity=0.056 Sum_probs=26.7
Q ss_pred eEEecccchhHHHHHHHhhhhhccCCCCCHHHHHH
Q 037246 194 YSILSGTSVACSHVTGAAAYVKSFHPDWSPSSIKS 228 (497)
Q Consensus 194 y~~~sGTSmAaP~VAGiaALl~s~~p~lsp~~ik~ 228 (497)
--.+.|=|= |++|.|.+|++...+-..+|++|..
T Consensus 71 ~~~F~gdSd-A~ivrGL~aill~~~~G~t~~eI~~ 104 (144)
T COG2166 71 TLHFFGDSD-ARIVRGLLAILLAAYSGKTAAEILA 104 (144)
T ss_pred eEEEeccch-hHHHHHHHHHHHHHHcCCCHHHHHc
Confidence 334555553 6799999999999999999999843
No 118
>PRK15299 fimbrial chaperone protein StiB; Provisional
Probab=22.80 E-value=6.1e+02 Score=24.72 Aligned_cols=53 Identities=15% Similarity=0.106 Sum_probs=35.2
Q ss_pred ceEEEEEEEEecCCCCeEEEEE--EecC------CCeEEEEeCCeEEEeeCCcEEEEEEEEEec
Q 037246 323 FAVNFSRTVTNVGQGNSKYKAK--VTVD------PKIKINVAPSDLSFKSLKEKQSFVVTVSGV 378 (497)
Q Consensus 323 ~~~t~~~tvtN~g~~~~ty~~~--v~~~------~g~~v~vsp~~lt~~~~g~s~~~~Vt~~~~ 378 (497)
.....+++|+|.++.+ |-+. ++.. ....+-++|.-+++ .+|+++.++|.....
T Consensus 36 ~~~~~sl~l~N~~~~p--~lvQsWv~~~~~~~~~~~~pfivtPPl~rl-~p~~~q~lRI~~~~~ 96 (227)
T PRK15299 36 DAKDASISISNSDNVP--YLIQSWAQSISETGASGDAPFMVTPPLFRL-NGGQKNVLRIIRTGG 96 (227)
T ss_pred CCcEEEEEEEeCCCCc--EEEEEEeecCCCCCCcCCCCEEEcCCeEEE-CCCCccEEEEEECCC
Confidence 3566678889987754 3332 2211 12347789999999 789999998876543
No 119
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=22.56 E-value=2e+02 Score=22.47 Aligned_cols=17 Identities=35% Similarity=0.462 Sum_probs=13.9
Q ss_pred ceEEEEEEEEecCCCCe
Q 037246 323 FAVNFSRTVTNVGQGNS 339 (497)
Q Consensus 323 ~~~t~~~tvtN~g~~~~ 339 (497)
...+++++|+|.|+...
T Consensus 41 d~v~ytitvtN~G~~~a 57 (76)
T PF01345_consen 41 DTVTYTITVTNTGPAPA 57 (76)
T ss_pred CEEEEEEEEEECCCCee
Confidence 47888899999998763
No 120
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=22.33 E-value=56 Score=31.65 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=22.7
Q ss_pred CCCCeEEEEeeceecCCCCCCCCC
Q 037246 56 VESDIVIGVLDSGIWPELESFNDE 79 (497)
Q Consensus 56 ~G~gV~VaVlDTGI~~~Hp~f~~~ 79 (497)
+|+||+|||||+||+++||+|.+.
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~ 24 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGR 24 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCc
Confidence 599999999999999999999976
No 121
>TIGR00845 caca sodium/calcium exchanger 1. This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family
Probab=22.18 E-value=7.9e+02 Score=29.44 Aligned_cols=53 Identities=13% Similarity=0.126 Sum_probs=29.9
Q ss_pred EEEEEEEEecC-CCCeEEEEEEe-----cCCCeEEEEeCCeEEEeeCCcE-EEEEEEEEec
Q 037246 325 VNFSRTVTNVG-QGNSKYKAKVT-----VDPKIKINVAPSDLSFKSLKEK-QSFVVTVSGV 378 (497)
Q Consensus 325 ~t~~~tvtN~g-~~~~ty~~~v~-----~~~g~~v~vsp~~lt~~~~g~s-~~~~Vt~~~~ 378 (497)
.+++++|+=.| +...+.++.+. +-+|.+......+|+| ++||+ ++++|.+.-+
T Consensus 416 GtV~VtV~R~GGdl~~tVsVdY~T~DGTA~AG~DY~~~sGTLtF-~PGEt~KtItV~IIDD 475 (928)
T TIGR00845 416 GTVALTVVRRGGDLTNTVYVDYRTEDGTANAGSDYEFTEGTLVF-KPGETQKEFRIGIIDD 475 (928)
T ss_pred cEEEEEEEEccCCCCceEEEEEEccCCccCCCCCccccCceEEE-CCCceEEEEEEEEccC
Confidence 34555554333 54444444443 2346666667789999 67887 4555555443
No 122
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=21.98 E-value=51 Score=33.08 Aligned_cols=38 Identities=18% Similarity=0.209 Sum_probs=28.5
Q ss_pred ccCcEEEeccCCCCCCcceee------------ecCceeEecCCCccccc
Q 037246 400 RSPIVLYTNKGDSDPTSATVS------------SVAPCVLTLGASHVDCQ 437 (497)
Q Consensus 400 ~~pI~V~~~agn~gp~~~~v~------------n~aPw~~tv~Ast~dr~ 437 (497)
+.++++++++||.++...... -..|.+++|||.+.+..
T Consensus 134 ~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~ 183 (291)
T cd04847 134 EYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDD 183 (291)
T ss_pred cCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCcc
Confidence 778999999999988654321 23478999999876644
No 123
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=21.25 E-value=60 Score=22.80 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=18.3
Q ss_pred hhhhccCCCCCHHHHHHHhhccc
Q 037246 212 AYVKSFHPDWSPSSIKSALMTTA 234 (497)
Q Consensus 212 ALl~s~~p~lsp~~ik~~L~~tA 234 (497)
--+++.+|+++++.|+..|...-
T Consensus 6 ~~L~~mFP~~~~~~I~~~L~~~~ 28 (42)
T PF02845_consen 6 QQLQEMFPDLDREVIEAVLQANN 28 (42)
T ss_dssp HHHHHHSSSS-HHHHHHHHHHTT
T ss_pred HHHHHHCCCCCHHHHHHHHHHcC
Confidence 45788899999999999996654
No 124
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=20.62 E-value=6.7e+02 Score=24.81 Aligned_cols=55 Identities=9% Similarity=0.077 Sum_probs=36.2
Q ss_pred ceEEEEEEEEecCCCCeEEEEEEec------CCC--eEEEEeCCeEEEeeCCcEEEEEEEEEec
Q 037246 323 FAVNFSRTVTNVGQGNSKYKAKVTV------DPK--IKINVAPSDLSFKSLKEKQSFVVTVSGV 378 (497)
Q Consensus 323 ~~~t~~~tvtN~g~~~~ty~~~v~~------~~g--~~v~vsp~~lt~~~~g~s~~~~Vt~~~~ 378 (497)
.....+++|+|.++.+.-...-++. |.. ..+-++|.-+++ .+|+.+.++|.....
T Consensus 39 ~~~~~sv~l~N~~~~p~LvQ~Wvd~~~~~~~p~~~~~pfivtPPl~rl-~p~~~q~lRIi~~~~ 101 (246)
T PRK09926 39 DQKDVNVRLENKGNNPLLVQSWLDTGDDNAEPGSIKVPFTATPPVSRI-DPKRGQTIKLMYTAS 101 (246)
T ss_pred CCceEEEEEEeCCCCcEEEEEEecCCCCccCccccCCCEEEcCCeEEE-CCCCccEEEEEeCCC
Confidence 3566678889988764322222221 111 247789999999 789999999876654
Done!