BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037247
(196 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LDT3|YAB4_ARATH Axial regulator YABBY 4 OS=Arabidopsis thaliana GN=YAB4 PE=1 SV=2
Length = 231
Score = 124 bits (312), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 67/120 (55%), Positives = 80/120 (66%), Gaps = 2/120 (1%)
Query: 42 SILTSSDNEEEDTGSVINHVVNKPPEKRQRAPSAYNRFIKEEIRRLKTENPNMAHKEAFS 101
++++SSDNE+ED V VVNKPPEKRQRAPSAYN FIKEEIRRLK +NP+MAHKEAFS
Sbjct: 109 TLVSSSDNEDEDVSRVY-QVVNKPPEKRQRAPSAYNCFIKEEIRRLKAQNPSMAHKEAFS 167
Query: 102 TAAKNWAQCPPIQHK-GDGESCGGQEEEKRAWNFEATDRVHVQGNGFRERKAPRHSFRAR 160
AAKNWA PP +K + C +E+ + NGFRERKA RHS +
Sbjct: 168 LAAKNWAHFPPAHNKRAASDQCFCEEDNNAILPCNVFEDHEESNNGFRERKAQRHSIWGK 227
>sp|Q10FZ7|YAB2_ORYSJ Protein YABBY 2 OS=Oryza sativa subsp. japonica GN=YAB2 PE=2 SV=1
Length = 186
Score = 87.0 bits (214), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 41/56 (73%), Positives = 47/56 (83%), Gaps = 1/56 (1%)
Query: 64 KPPEKRQRAPSAYNRFIKEEIRRLKTENPNMAHKEAFSTAAKNWAQCPPIQHKGDG 119
+PPEKRQR PSAYNRFIKEEIRR+K NP+++H+EAFSTAAKNWA P I H G G
Sbjct: 108 RPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHFPNI-HFGLG 162
>sp|Q8GW46|YAB5_ARATH Axial regulator YABBY 5 OS=Arabidopsis thaliana GN=YAB5 PE=2 SV=1
Length = 164
Score = 86.7 bits (213), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 38/54 (70%), Positives = 47/54 (87%)
Query: 61 VVNKPPEKRQRAPSAYNRFIKEEIRRLKTENPNMAHKEAFSTAAKNWAQCPPIQ 114
+VN+PPEKRQR PSAYN+FIKEEI+R+K NP+++H+EAFSTAAKNWA P I
Sbjct: 97 IVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIH 150
>sp|Q8L556|YAB3_ORYSJ Protein YABBY 3 OS=Oryza sativa subsp. japonica GN=YAB3 PE=2 SV=1
Length = 313
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/54 (68%), Positives = 46/54 (85%)
Query: 61 VVNKPPEKRQRAPSAYNRFIKEEIRRLKTENPNMAHKEAFSTAAKNWAQCPPIQ 114
V+N+PPEKRQR PSAYNRFIK+EI+R+K NP+++H+EAFS AAKNWA P I
Sbjct: 211 VINRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIH 264
>sp|Q2QM17|YAB6_ORYSJ Protein YABBY 6 OS=Oryza sativa subsp. japonica GN=YAB6 PE=2 SV=1
Length = 207
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/50 (76%), Positives = 44/50 (88%)
Query: 64 KPPEKRQRAPSAYNRFIKEEIRRLKTENPNMAHKEAFSTAAKNWAQCPPI 113
+PPEKRQR PSAYNRFIKEEIRR+K NP+++H+EAFSTAAKNWA P I
Sbjct: 124 RPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNI 173
>sp|Q9XFB0|YAB2_ARATH Putative axial regulator YABBY 2 OS=Arabidopsis thaliana GN=YAB2
PE=2 SV=1
Length = 184
Score = 85.1 bits (209), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/70 (61%), Positives = 51/70 (72%), Gaps = 2/70 (2%)
Query: 64 KPPEKRQRAPSAYNRFIKEEIRRLKTENPNMAHKEAFSTAAKNWAQCPPIQH--KGDGES 121
+PPEKRQR PSAYNRFIKEEI+R+K NP ++H+EAFSTAAKNWA P I K DG
Sbjct: 107 RPPEKRQRVPSAYNRFIKEEIQRIKACNPEISHREAFSTAAKNWAHFPHIHFGLKLDGNK 166
Query: 122 CGGQEEEKRA 131
G Q ++ A
Sbjct: 167 KGKQLDQSVA 176
>sp|O22152|YAB1_ARATH Axial regulator YABBY 1 OS=Arabidopsis thaliana GN=YAB1 PE=1 SV=1
Length = 229
Score = 84.3 bits (207), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 38/52 (73%), Positives = 45/52 (86%)
Query: 62 VNKPPEKRQRAPSAYNRFIKEEIRRLKTENPNMAHKEAFSTAAKNWAQCPPI 113
VN+PPEKRQR PSAYNRFIKEEI+R+K NP+++H+EAFS AAKNWA P I
Sbjct: 134 VNRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHI 185
>sp|Q7XIM7|YAB1_ORYSJ Protein YABBY 1 OS=Oryza sativa subsp. japonica GN=YAB1 PE=2 SV=1
Length = 169
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 36/48 (75%), Positives = 42/48 (87%)
Query: 64 KPPEKRQRAPSAYNRFIKEEIRRLKTENPNMAHKEAFSTAAKNWAQCP 111
+PPEKRQR PSAYNRFIKEEI+R+KT NP ++H+EAFS AAKNWA P
Sbjct: 104 RPPEKRQRVPSAYNRFIKEEIQRIKTSNPEISHREAFSAAAKNWAHLP 151
>sp|Q6H668|YAB4_ORYSJ Protein YABBY 4 OS=Oryza sativa subsp. japonica GN=YAB4 PE=2 SV=1
Length = 256
Score = 81.6 bits (200), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 36/52 (69%), Positives = 44/52 (84%)
Query: 63 NKPPEKRQRAPSAYNRFIKEEIRRLKTENPNMAHKEAFSTAAKNWAQCPPIQ 114
N+PPEKRQR PSAYNRFIK+EI+R+K NP+++H+EAFS AAKNWA P I
Sbjct: 158 NRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIH 209
>sp|A2X7Q3|YAB4_ORYSI Protein YABBY 4 OS=Oryza sativa subsp. indica GN=YAB4 PE=2 SV=1
Length = 256
Score = 81.6 bits (200), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 36/52 (69%), Positives = 44/52 (84%)
Query: 63 NKPPEKRQRAPSAYNRFIKEEIRRLKTENPNMAHKEAFSTAAKNWAQCPPIQ 114
N+PPEKRQR PSAYNRFIK+EI+R+K NP+++H+EAFS AAKNWA P I
Sbjct: 158 NRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIH 209
>sp|Q9XFB1|YAB3_ARATH Axial regulator YABBY 3 OS=Arabidopsis thaliana GN=YAB3 PE=1 SV=1
Length = 240
Score = 76.6 bits (187), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 34/48 (70%), Positives = 40/48 (83%)
Query: 67 EKRQRAPSAYNRFIKEEIRRLKTENPNMAHKEAFSTAAKNWAQCPPIQ 114
EKRQR PSAYNRFIKEEI+R+K NP+++H+EAFS AAKNWA P I
Sbjct: 151 EKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIH 198
>sp|Q76EJ0|YABDL_ORYSJ Protein DROOPING LEAF OS=Oryza sativa subsp. japonica GN=DL PE=1
SV=1
Length = 194
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 50/70 (71%), Gaps = 4/70 (5%)
Query: 43 ILTSSDNEEEDTGSVINHVVNKPPEKRQRAPSAYNRFIKEEIRRLKTENPNMAHKEAFST 102
+++ + NE GS V KPPEK+ R PSAYNRF++EEI+R+K P++ H+EAFS
Sbjct: 83 LVSPTSNE----GSPRAPFVVKPPEKKHRLPSAYNRFMREEIQRIKAAKPDIPHREAFSM 138
Query: 103 AAKNWAQCPP 112
AAKNWA+C P
Sbjct: 139 AAKNWAKCDP 148
>sp|Q0JBF0|YAB5_ORYSJ Protein YABBY 5 OS=Oryza sativa subsp. japonica GN=YAB5 PE=2 SV=1
Length = 266
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/51 (66%), Positives = 41/51 (80%)
Query: 63 NKPPEKRQRAPSAYNRFIKEEIRRLKTENPNMAHKEAFSTAAKNWAQCPPI 113
N+ EKRQR PSAYNRFIK+EI+R+K NP++ H+EAFS AAKNWA P I
Sbjct: 164 NRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNWAHFPHI 214
>sp|Q01JG2|YAB5_ORYSI Protein YABBY 5 OS=Oryza sativa subsp. indica GN=YAB5 PE=2 SV=2
Length = 266
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/51 (66%), Positives = 41/51 (80%)
Query: 63 NKPPEKRQRAPSAYNRFIKEEIRRLKTENPNMAHKEAFSTAAKNWAQCPPI 113
N+ EKRQR PSAYNRFIK+EI+R+K NP++ H+EAFS AAKNWA P I
Sbjct: 164 NRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNWAHFPHI 214
>sp|A2PZN8|YAB7_ORYSJ Protein YABBY 7 OS=Oryza sativa subsp. japonica GN=YAB7 PE=2 SV=1
Length = 169
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/55 (61%), Positives = 43/55 (78%)
Query: 68 KRQRAPSAYNRFIKEEIRRLKTENPNMAHKEAFSTAAKNWAQCPPIQHKGDGESC 122
++QR PSAYN F+KEEI+R+K+ PN+ HK+AFSTAAKNWA P IQ K +SC
Sbjct: 115 RKQRTPSAYNCFVKEEIKRIKSMEPNITHKQAFSTAAKNWAHLPRIQQKRGRDSC 169
>sp|Q8L925|CRC_ARATH Protein CRABS CLAW OS=Arabidopsis thaliana GN=CRC PE=1 SV=2
Length = 181
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/51 (64%), Positives = 43/51 (84%)
Query: 62 VNKPPEKRQRAPSAYNRFIKEEIRRLKTENPNMAHKEAFSTAAKNWAQCPP 112
V KPPEK+QR PSAYNRF+++EI+R+K+ NP + H+EAFS AAKNWA+ P
Sbjct: 108 VVKPPEKKQRLPSAYNRFMRDEIQRIKSANPEIPHREAFSAAAKNWAKYIP 158
>sp|Q2TBV6|CC124_BOVIN Coiled-coil domain-containing protein 124 OS=Bos taurus GN=CCDC124
PE=2 SV=1
Length = 223
Score = 39.3 bits (90), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 56 SVINHVVNKPPEKRQRAPSAYNRFIKEEIRRLKTENPNMAHKEAFSTAAKNWAQCP 111
SV V++ PE+R RA AY F + ++ RLK ENPNM + K W + P
Sbjct: 155 SVTEEAVDRHPERRMRA--AYTAFEEAQLPRLKQENPNMRLSQLKQMLKKEWLRSP 208
>sp|Q5R8X8|CC124_PONAB Coiled-coil domain-containing protein 124 OS=Pongo abelii
GN=CCDC124 PE=2 SV=1
Length = 223
Score = 37.4 bits (85), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 56 SVINHVVNKPPEKRQRAPSAYNRFIKEEIRRLKTENPNMAHKEAFSTAAKNWAQCP 111
SV ++ PE+RQRA A+ F + ++ RLK ENPNM + K W + P
Sbjct: 155 SVAEEAADRHPERRQRA--AFTAFEEAQLPRLKQENPNMRLSQLKQLLKKEWLRSP 208
>sp|Q96CT7|CC124_HUMAN Coiled-coil domain-containing protein 124 OS=Homo sapiens
GN=CCDC124 PE=1 SV=1
Length = 223
Score = 35.4 bits (80), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 56 SVINHVVNKPPEKRQRAPSAYNRFIKEEIRRLKTENPNMAHKEAFSTAAKNWAQCP 111
SV ++ PE+R RA A+ F + ++ RLK ENPNM + K W + P
Sbjct: 155 SVAEEAADRHPERRMRA--AFTAFEEAQLPRLKQENPNMRLSQLKQLLKKEWLRSP 208
>sp|P47150|RT07_YEAST 37S ribosomal protein S7, mitochondrial OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RSM7 PE=1 SV=1
Length = 247
Score = 33.9 bits (76), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 18/88 (20%)
Query: 3 LYLLYTPFQKFPHSSKMPKEEFRKEEVQADQKAFNKFSPSILTSSDNEEEDTGSVINHVV 62
LYL+Y + R++ +QA +K+ ++ +P ++T + N TG V+
Sbjct: 138 LYLVYC--------------QTRQDPIQALEKSLDELAPLMMTKTFN----TGVAKASVI 179
Query: 63 NKPPEKRQRAPSAYNRFIKEEIRRLKTE 90
P KRQR A+N ++ +R+ ++
Sbjct: 180 PVPLNKRQRNRIAWNWIVQSANQRVSSD 207
>sp|Q9D8X2|CC124_MOUSE Coiled-coil domain-containing protein 124 OS=Mus musculus
GN=Ccdc124 PE=2 SV=1
Length = 217
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 52 EDTGSVINHV--VNKPPEKRQRAPSAYNRFIKEEIRRLKTENPNMAHKEAFSTAAKNWAQ 109
ED +V++ ++ PE+R RA A+ F + ++ RLK ENPNM + K W +
Sbjct: 143 EDAIAVLSVAEEADRHPERRMRA--AFTAFEEVQLPRLKQENPNMRLSQLKQLLKKEWLR 200
Query: 110 CP 111
P
Sbjct: 201 SP 202
>sp|Q9HCM3|K1549_HUMAN UPF0606 protein KIAA1549 OS=Homo sapiens GN=KIAA1549 PE=1 SV=4
Length = 1950
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 44 LTSSDNEEEDTGSVINHV--VNKPPEKRQRAPSAYNRFIKEEIRRLKTENPNMAHKEA 99
L SS NE+ + S+ HV +++PPE +R PS + I + P+ A + A
Sbjct: 1452 LPSSGNEQHSSASIFEHVDRISRPPEASRRVPSKIQLIAMQPIPAPPVQRPSPADRVA 1509
>sp|B8H8Y9|RSMG_ARTCA Ribosomal RNA small subunit methyltransferase G OS=Arthrobacter
chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 /
JCM 12360) GN=rsmG PE=3 SV=1
Length = 216
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 27 EEVQADQKAFNKFS---PSILTSSDNEEEDTGSVINHVVNKPPEK 68
EE++ KA K S+LT DN E+ +V+ VVNKP +K
Sbjct: 171 EEIEKAAKAIRKLGGVETSVLTVGDNLLEEPTTVVRIVVNKPQKK 215
>sp|Q6PHE8|CC124_DANRE Coiled-coil domain-containing protein 124 OS=Danio rerio GN=ccdc124
PE=2 SV=1
Length = 216
Score = 31.6 bits (70), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 36 FNKFSPSILTSSDNEEEDTGSVIN--HVVNKPPEKRQRAPSAYNRFIKEEIRRLKTENPN 93
N+ P T ED +V++ +++ PE+R +A AY F + + R+K ENPN
Sbjct: 127 VNRIVPEEGTVEARTIEDAIAVLSTKEDLDRHPERRMKA--AYTAFEEANMPRVKMENPN 184
Query: 94 MAHKEAFSTAAKNWAQCP 111
M + K W + P
Sbjct: 185 MRLSQLKQQLKKEWTKSP 202
>sp|P0CO24|NHP6_CRYNJ Non-histone chromosomal protein 6 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=NHP6 PE=3 SV=1
Length = 116
Score = 30.8 bits (68), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 45 TSSDNEEEDTGSVINHVVNKPPEKRQRAPSAYNRFIKEEIRRLKTENP 92
S+ + ++ T S K P K +RA SAY F+++ R+KTENP
Sbjct: 4 VSTKDSKKSTASDAKKRTKKDPNKPKRALSAYMFFVQDYRERIKTENP 51
>sp|P0CO25|NHP6_CRYNB Non-histone chromosomal protein 6 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=NHP6 PE=3
SV=1
Length = 116
Score = 30.8 bits (68), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 45 TSSDNEEEDTGSVINHVVNKPPEKRQRAPSAYNRFIKEEIRRLKTENP 92
S+ + ++ T S K P K +RA SAY F+++ R+KTENP
Sbjct: 4 VSTKDSKKSTASDAKKRTKKDPNKPKRALSAYMFFVQDYRERIKTENP 51
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.128 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,073,593
Number of Sequences: 539616
Number of extensions: 3328195
Number of successful extensions: 6854
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 6804
Number of HSP's gapped (non-prelim): 78
length of query: 196
length of database: 191,569,459
effective HSP length: 111
effective length of query: 85
effective length of database: 131,672,083
effective search space: 11192127055
effective search space used: 11192127055
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.9 bits)