Query 037247
Match_columns 196
No_of_seqs 89 out of 91
Neff 2.3
Searched_HMMs 29240
Date Mon Mar 25 17:27:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037247.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037247hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hme_A High mobility group pro 98.1 5.6E-06 1.9E-10 56.2 5.3 48 64-111 2-49 (77)
2 3nm9_A HMG-D, high mobility gr 98.0 1.2E-05 4.1E-10 54.5 5.7 45 68-112 3-47 (73)
3 1wz6_A HMG-box transcription f 98.0 1.2E-05 3.9E-10 55.5 5.5 47 64-110 3-49 (82)
4 1wxl_A Single-strand recogniti 97.9 1.5E-05 5.3E-10 54.0 5.5 45 66-110 1-45 (73)
5 2crj_A SWI/SNF-related matrix- 97.9 2.1E-05 7.1E-10 55.7 6.3 48 64-111 3-50 (92)
6 1wgf_A Upstream binding factor 97.9 1.7E-05 5.8E-10 56.1 5.3 49 62-110 14-62 (90)
7 1hry_A Human SRY; DNA, DNA-bin 97.9 1.6E-05 5.5E-10 53.8 4.9 45 66-110 2-46 (76)
8 2cs1_A PMS1 protein homolog 1; 97.9 2.9E-05 1E-09 54.9 6.1 46 65-110 4-49 (92)
9 2e6o_A HMG box-containing prot 97.9 2.4E-05 8.1E-10 54.9 5.4 48 63-110 12-59 (87)
10 1j46_A SRY, sex-determining re 97.8 3.1E-05 1.1E-09 54.0 5.8 45 66-110 2-46 (85)
11 2co9_A Thymus high mobility gr 97.8 2.7E-05 9.4E-10 56.3 5.7 48 63-110 12-59 (102)
12 1k99_A Upstream binding factor 97.8 3E-05 1E-09 56.1 5.5 49 63-111 5-53 (99)
13 1i11_A Transcription factor SO 97.8 4.7E-05 1.6E-09 52.3 5.8 44 67-110 3-46 (81)
14 2eqz_A High mobility group pro 97.8 4.1E-05 1.4E-09 53.4 5.6 48 63-110 10-59 (86)
15 1ckt_A High mobility group 1 p 97.8 4.2E-05 1.4E-09 51.0 5.3 44 68-111 1-46 (71)
16 3f27_D Transcription factor SO 97.8 3.6E-05 1.2E-09 52.8 5.2 45 66-110 4-48 (83)
17 4a3n_A Transcription factor SO 97.8 3.8E-05 1.3E-09 50.9 5.0 43 68-110 2-44 (71)
18 4euw_A Transcription factor SO 97.7 4.7E-05 1.6E-09 55.7 5.8 48 63-110 24-71 (106)
19 1gt0_D Transcription factor SO 97.7 7E-05 2.4E-09 51.2 5.7 43 68-110 2-44 (80)
20 1aab_A High mobility group pro 97.6 4.5E-05 1.5E-09 52.7 4.0 47 64-110 3-51 (83)
21 2gzk_A Sex-determining region 97.6 9.1E-05 3.1E-09 56.1 6.0 48 63-110 83-130 (159)
22 3u2b_C Transcription factor SO 97.6 0.00011 3.7E-09 49.9 5.3 42 69-110 3-44 (79)
23 2lhj_A High mobility group pro 97.6 3.6E-05 1.2E-09 54.9 2.9 51 62-112 16-68 (97)
24 2yrq_A High mobility group pro 97.6 0.0001 3.5E-09 56.9 5.6 48 64-111 97-144 (173)
25 1cg7_A Protein (NON histone pr 97.5 3.7E-05 1.3E-09 54.7 2.4 48 63-110 15-62 (93)
26 2lef_A LEF-1 HMG, protein (lym 97.5 0.00017 5.8E-09 50.2 5.6 43 68-110 2-44 (86)
27 2d7l_A WD repeat and HMG-box D 97.5 0.00024 8.3E-09 50.4 6.0 45 66-110 3-48 (81)
28 2yrq_A High mobility group pro 97.4 0.00027 9.3E-09 54.5 5.9 48 63-110 10-59 (173)
29 3tq6_A Transcription factor A, 97.2 0.00035 1.2E-08 56.6 4.5 46 66-111 7-52 (214)
30 3tmm_A Transcription factor A, 97.1 0.00048 1.7E-08 56.6 4.4 49 63-111 36-84 (238)
31 2gzk_A Sex-determining region 96.9 0.0015 5E-08 49.5 5.5 45 66-110 2-46 (159)
32 1l8y_A Upstream binding factor 96.7 0.0021 7.3E-08 47.6 5.3 41 68-109 4-44 (91)
33 3fgh_A Transcription factor A, 96.7 0.0015 5.1E-08 43.3 3.8 40 68-111 2-41 (67)
34 1v64_A Nucleolar transcription 95.9 0.011 3.6E-07 43.6 4.9 45 63-111 11-56 (108)
35 1v63_A Nucleolar transcription 95.8 0.014 4.8E-07 42.4 5.2 41 68-110 8-48 (101)
36 3tmm_A Transcription factor A, 95.4 0.0055 1.9E-07 50.3 1.9 43 65-111 143-185 (238)
37 3tq6_A Transcription factor A, 95.3 0.0062 2.1E-07 49.3 1.8 42 65-110 111-152 (214)
38 2yuk_A Myeloid/lymphoid or mix 94.7 0.0054 1.8E-07 45.1 -0.1 44 65-110 19-62 (90)
39 2cto_A Novel protein; high mob 92.0 0.071 2.4E-06 39.0 2.1 43 66-110 8-53 (93)
40 2d3o_1 Trigger factor, TF; rib 43.9 9.5 0.00032 27.7 1.6 21 140-160 36-56 (112)
41 2nsc_A Trigger factor, TF; cha 42.5 8.4 0.00029 27.8 1.1 20 140-159 37-56 (109)
42 1p9y_A Trigger factor, TF; alp 37.2 11 0.00039 27.7 1.1 20 140-159 40-59 (121)
No 1
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=98.07 E-value=5.6e-06 Score=56.20 Aligned_cols=48 Identities=25% Similarity=0.461 Sum_probs=44.0
Q ss_pred CCCccCCCCChhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCC
Q 037247 64 KPPEKRQRAPSAYNRFIKEEIRRLKTENPNMAHKEAFSTAAKNWAQCP 111 (196)
Q Consensus 64 kppEKr~R~PSAYN~FMKeEIqRiKa~nPdisHKEAFs~AAkNWa~~P 111 (196)
+-|.++.|.+|||..|+++.-..|++++|++++.|.-+.++..|+..+
T Consensus 2 kdp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 49 (77)
T 1hme_A 2 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTA 49 (77)
T ss_dssp CCSSCCCCCCCTTHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCC
Confidence 456778899999999999999999999999999999999999999653
No 2
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=97.99 E-value=1.2e-05 Score=54.54 Aligned_cols=45 Identities=24% Similarity=0.406 Sum_probs=41.8
Q ss_pred cCCCCChhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCCC
Q 037247 68 KRQRAPSAYNRFIKEEIRRLKTENPNMAHKEAFSTAAKNWAQCPP 112 (196)
Q Consensus 68 Kr~R~PSAYN~FMKeEIqRiKa~nPdisHKEAFs~AAkNWa~~P~ 112 (196)
++.|.+|||..|+++.-..|++++|+++..|.-+.++..|+..++
T Consensus 3 ~PKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls~ 47 (73)
T 3nm9_A 3 KPKRPLSAYALWLNSARESIKRENPGIKVTEVAKRGGELWRAMKD 47 (73)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHCSC
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCCc
Confidence 457889999999999999999999999999999999999998754
No 3
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=97.97 E-value=1.2e-05 Score=55.54 Aligned_cols=47 Identities=21% Similarity=0.314 Sum_probs=43.7
Q ss_pred CCCccCCCCChhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC
Q 037247 64 KPPEKRQRAPSAYNRFIKEEIRRLKTENPNMAHKEAFSTAAKNWAQC 110 (196)
Q Consensus 64 kppEKr~R~PSAYN~FMKeEIqRiKa~nPdisHKEAFs~AAkNWa~~ 110 (196)
.+|.+..|.+|||..|+++.-..|++++|++++.|.-+.++..|+..
T Consensus 3 ~~~~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l 49 (82)
T 1wz6_A 3 SGSSGARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVL 49 (82)
T ss_dssp SSCCCSCCCCCHHHHHHHHHHHHHHHHCSSSCTTHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhC
Confidence 46778889999999999999999999999999999999999999953
No 4
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=97.94 E-value=1.5e-05 Score=53.99 Aligned_cols=45 Identities=20% Similarity=0.412 Sum_probs=42.1
Q ss_pred CccCCCCChhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC
Q 037247 66 PEKRQRAPSAYNRFIKEEIRRLKTENPNMAHKEAFSTAAKNWAQC 110 (196)
Q Consensus 66 pEKr~R~PSAYN~FMKeEIqRiKa~nPdisHKEAFs~AAkNWa~~ 110 (196)
|.+..|.+|||..|+++.-..|+++||+++..|.-+.++..|+..
T Consensus 1 P~~pKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l 45 (73)
T 1wxl_A 1 SHMPKRATTAFMLWLNDTRESIKRENPGIKVTEIAKKGGEMWKEL 45 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhh
Confidence 556788999999999999999999999999999999999999975
No 5
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=97.93 E-value=2.1e-05 Score=55.72 Aligned_cols=48 Identities=17% Similarity=0.416 Sum_probs=44.2
Q ss_pred CCCccCCCCChhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCC
Q 037247 64 KPPEKRQRAPSAYNRFIKEEIRRLKTENPNMAHKEAFSTAAKNWAQCP 111 (196)
Q Consensus 64 kppEKr~R~PSAYN~FMKeEIqRiKa~nPdisHKEAFs~AAkNWa~~P 111 (196)
+-|.++.|.+|||..|+++.-..|+++||++++.|.-+.++..|+..+
T Consensus 3 kdp~~pKrP~~af~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 50 (92)
T 2crj_A 3 SGSSGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQ 50 (92)
T ss_dssp CCCSSSCCCCCHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCC
Confidence 457788899999999999999999999999999999999999999643
No 6
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=97.90 E-value=1.7e-05 Score=56.13 Aligned_cols=49 Identities=29% Similarity=0.380 Sum_probs=45.2
Q ss_pred ccCCCccCCCCChhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC
Q 037247 62 VNKPPEKRQRAPSAYNRFIKEEIRRLKTENPNMAHKEAFSTAAKNWAQC 110 (196)
Q Consensus 62 ~~kppEKr~R~PSAYN~FMKeEIqRiKa~nPdisHKEAFs~AAkNWa~~ 110 (196)
..+.|.++.|.+|||..|+++.-..|+++||++++.|.-+.++..|+..
T Consensus 14 ~~kdp~~pKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~l 62 (90)
T 1wgf_A 14 GKGGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDL 62 (90)
T ss_dssp CSSCCCCCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhC
Confidence 3567788899999999999999999999999999999999999999964
No 7
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=97.89 E-value=1.6e-05 Score=53.78 Aligned_cols=45 Identities=20% Similarity=0.412 Sum_probs=41.4
Q ss_pred CccCCCCChhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC
Q 037247 66 PEKRQRAPSAYNRFIKEEIRRLKTENPNMAHKEAFSTAAKNWAQC 110 (196)
Q Consensus 66 pEKr~R~PSAYN~FMKeEIqRiKa~nPdisHKEAFs~AAkNWa~~ 110 (196)
|.+..|.+|||..|+++.-+.|++++|++++.|.-+.++..|+..
T Consensus 2 p~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l 46 (76)
T 1hry_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKML 46 (76)
T ss_dssp -CCCCCCCCHHHHHHHHHHHHHHHHCSCCSSSHHHHHHHHHHHTC
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhHHHhC
Confidence 566788999999999999999999999999999999999999964
No 8
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.86 E-value=2.9e-05 Score=54.94 Aligned_cols=46 Identities=17% Similarity=0.263 Sum_probs=42.4
Q ss_pred CCccCCCCChhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC
Q 037247 65 PPEKRQRAPSAYNRFIKEEIRRLKTENPNMAHKEAFSTAAKNWAQC 110 (196)
Q Consensus 65 ppEKr~R~PSAYN~FMKeEIqRiKa~nPdisHKEAFs~AAkNWa~~ 110 (196)
.|.+..|.+|||..|+++.-..|+++||+++..|.-+.++..|+..
T Consensus 4 ~p~~pKrP~say~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l 49 (92)
T 2cs1_A 4 GSSGIKKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTL 49 (92)
T ss_dssp CCSSSCCCCCHHHHHHHHHHHHHHHHCCSSCHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcC
Confidence 4667788999999999999999999999999999999999999953
No 9
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=97.85 E-value=2.4e-05 Score=54.94 Aligned_cols=48 Identities=17% Similarity=0.265 Sum_probs=44.7
Q ss_pred cCCCccCCCCChhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC
Q 037247 63 NKPPEKRQRAPSAYNRFIKEEIRRLKTENPNMAHKEAFSTAAKNWAQC 110 (196)
Q Consensus 63 ~kppEKr~R~PSAYN~FMKeEIqRiKa~nPdisHKEAFs~AAkNWa~~ 110 (196)
.+.|.+..|.++||..|+++.-+.|++++|++++.|.-+.++..|+..
T Consensus 12 ~kdp~~pKrP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~l 59 (87)
T 2e6o_A 12 ATSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKM 59 (87)
T ss_dssp CCCCSSCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhC
Confidence 566788899999999999999999999999999999999999999964
No 10
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=97.84 E-value=3.1e-05 Score=54.00 Aligned_cols=45 Identities=20% Similarity=0.412 Sum_probs=41.7
Q ss_pred CccCCCCChhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC
Q 037247 66 PEKRQRAPSAYNRFIKEEIRRLKTENPNMAHKEAFSTAAKNWAQC 110 (196)
Q Consensus 66 pEKr~R~PSAYN~FMKeEIqRiKa~nPdisHKEAFs~AAkNWa~~ 110 (196)
|.+..|.+|||..|+++.-..|+++||++++.|.-+.++..|+..
T Consensus 2 p~~pKRP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~l 46 (85)
T 1j46_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKML 46 (85)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHTTS
T ss_pred cCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC
Confidence 566788999999999999999999999999999999999999953
No 11
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.83 E-value=2.7e-05 Score=56.31 Aligned_cols=48 Identities=29% Similarity=0.479 Sum_probs=44.5
Q ss_pred cCCCccCCCCChhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC
Q 037247 63 NKPPEKRQRAPSAYNRFIKEEIRRLKTENPNMAHKEAFSTAAKNWAQC 110 (196)
Q Consensus 63 ~kppEKr~R~PSAYN~FMKeEIqRiKa~nPdisHKEAFs~AAkNWa~~ 110 (196)
.+.|.++.|.+|||..|+++.-..|+++||+++..|.-+.++..|+..
T Consensus 12 ~kdp~~pKrP~say~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~l 59 (102)
T 2co9_A 12 KKDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGL 59 (102)
T ss_dssp CCCCCSCCCCCCHHHHTHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHccC
Confidence 467788899999999999999999999999999999999999999964
No 12
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=97.81 E-value=3e-05 Score=56.15 Aligned_cols=49 Identities=20% Similarity=0.401 Sum_probs=45.0
Q ss_pred cCCCccCCCCChhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCC
Q 037247 63 NKPPEKRQRAPSAYNRFIKEEIRRLKTENPNMAHKEAFSTAAKNWAQCP 111 (196)
Q Consensus 63 ~kppEKr~R~PSAYN~FMKeEIqRiKa~nPdisHKEAFs~AAkNWa~~P 111 (196)
.+.|.++.|.+|||..|+++.-..|+++||+++..|.-+.++..|+..+
T Consensus 5 ~kdp~~PKRP~saf~lF~~~~r~~ik~~~P~~~~~eisk~lg~~Wk~ls 53 (99)
T 1k99_A 5 KKHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELP 53 (99)
T ss_dssp CSSSSSCCCSCCHHHHHHHHHHHHHHTTCTTSCSHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCC
Confidence 3567788899999999999999999999999999999999999999754
No 13
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=97.77 E-value=4.7e-05 Score=52.33 Aligned_cols=44 Identities=18% Similarity=0.340 Sum_probs=40.6
Q ss_pred ccCCCCChhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC
Q 037247 67 EKRQRAPSAYNRFIKEEIRRLKTENPNMAHKEAFSTAAKNWAQC 110 (196)
Q Consensus 67 EKr~R~PSAYN~FMKeEIqRiKa~nPdisHKEAFs~AAkNWa~~ 110 (196)
.+..|.+|||..|+++.-+.|++++|++++.|.-+.++..|+..
T Consensus 3 ~~pkRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l 46 (81)
T 1i11_A 3 PHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAM 46 (81)
T ss_dssp CCSCCSCCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHTTS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhhhhC
Confidence 35678899999999999999999999999999999999999964
No 14
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.77 E-value=4.1e-05 Score=53.45 Aligned_cols=48 Identities=23% Similarity=0.367 Sum_probs=43.2
Q ss_pred cCCCccCCCCChhhhHHHHHHHHHHHhcCCCCCH--HHHHHHHHHhhccC
Q 037247 63 NKPPEKRQRAPSAYNRFIKEEIRRLKTENPNMAH--KEAFSTAAKNWAQC 110 (196)
Q Consensus 63 ~kppEKr~R~PSAYN~FMKeEIqRiKa~nPdisH--KEAFs~AAkNWa~~ 110 (196)
.+-|.++.|.+|||..|+++.-..|+++||+++. .|.-+.++..|+..
T Consensus 10 ~kdp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~l 59 (86)
T 2eqz_A 10 KGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTM 59 (86)
T ss_dssp SCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhC
Confidence 4567788899999999999999999999999974 99999999999864
No 15
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=97.77 E-value=4.2e-05 Score=51.00 Aligned_cols=44 Identities=18% Similarity=0.317 Sum_probs=40.0
Q ss_pred cCCCCChhhhHHHHHHHHHHHhcCCCCCH--HHHHHHHHHhhccCC
Q 037247 68 KRQRAPSAYNRFIKEEIRRLKTENPNMAH--KEAFSTAAKNWAQCP 111 (196)
Q Consensus 68 Kr~R~PSAYN~FMKeEIqRiKa~nPdisH--KEAFs~AAkNWa~~P 111 (196)
|+.|.+|||..|+++.-+.|+++||+++. .|.-+.++..|+..+
T Consensus 1 kPKrP~say~~F~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls 46 (71)
T 1ckt_A 1 KPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 46 (71)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCC
T ss_pred CcCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCC
Confidence 45788999999999999999999999976 999999999998654
No 16
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=97.77 E-value=3.6e-05 Score=52.82 Aligned_cols=45 Identities=24% Similarity=0.464 Sum_probs=39.9
Q ss_pred CccCCCCChhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC
Q 037247 66 PEKRQRAPSAYNRFIKEEIRRLKTENPNMAHKEAFSTAAKNWAQC 110 (196)
Q Consensus 66 pEKr~R~PSAYN~FMKeEIqRiKa~nPdisHKEAFs~AAkNWa~~ 110 (196)
+.+..|.+|||..|+++.-..|+.++|++++.|.-+.++..|+..
T Consensus 4 ~~~pKrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l 48 (83)
T 3f27_D 4 TSRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKAL 48 (83)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcC
Confidence 456678999999999999999999999999999999999999863
No 17
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=97.76 E-value=3.8e-05 Score=50.88 Aligned_cols=43 Identities=26% Similarity=0.463 Sum_probs=38.2
Q ss_pred cCCCCChhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC
Q 037247 68 KRQRAPSAYNRFIKEEIRRLKTENPNMAHKEAFSTAAKNWAQC 110 (196)
Q Consensus 68 Kr~R~PSAYN~FMKeEIqRiKa~nPdisHKEAFs~AAkNWa~~ 110 (196)
|..|.+|||..|+++.-..|+.++|++++.|.-+.++..|+..
T Consensus 2 k~krP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l 44 (71)
T 4a3n_A 2 SIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKAL 44 (71)
T ss_dssp ---CCCCHHHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHS
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcC
Confidence 4568899999999999999999999999999999999999863
No 18
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=97.75 E-value=4.7e-05 Score=55.71 Aligned_cols=48 Identities=21% Similarity=0.321 Sum_probs=41.8
Q ss_pred cCCCccCCCCChhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC
Q 037247 63 NKPPEKRQRAPSAYNRFIKEEIRRLKTENPNMAHKEAFSTAAKNWAQC 110 (196)
Q Consensus 63 ~kppEKr~R~PSAYN~FMKeEIqRiKa~nPdisHKEAFs~AAkNWa~~ 110 (196)
.+.|.+..|.+|||..|+++.-..|++++|++++.|.-+.++..|+..
T Consensus 24 ~k~~~~pKRP~naf~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~l 71 (106)
T 4euw_A 24 SKNKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLL 71 (106)
T ss_dssp ----CCCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTC
T ss_pred cCCCCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcC
Confidence 566788899999999999999999999999999999999999999853
No 19
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=97.70 E-value=7e-05 Score=51.21 Aligned_cols=43 Identities=21% Similarity=0.410 Sum_probs=40.0
Q ss_pred cCCCCChhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC
Q 037247 68 KRQRAPSAYNRFIKEEIRRLKTENPNMAHKEAFSTAAKNWAQC 110 (196)
Q Consensus 68 Kr~R~PSAYN~FMKeEIqRiKa~nPdisHKEAFs~AAkNWa~~ 110 (196)
+..|.+|||..|+++.-..|++++|+++..|.-+.++..|+..
T Consensus 2 ~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l 44 (80)
T 1gt0_D 2 RVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLL 44 (80)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHTTS
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhC
Confidence 4578899999999999999999999999999999999999853
No 20
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=97.64 E-value=4.5e-05 Score=52.67 Aligned_cols=47 Identities=19% Similarity=0.367 Sum_probs=42.2
Q ss_pred CCCccCCCCChhhhHHHHHHHHHHHhcCCCCCH--HHHHHHHHHhhccC
Q 037247 64 KPPEKRQRAPSAYNRFIKEEIRRLKTENPNMAH--KEAFSTAAKNWAQC 110 (196)
Q Consensus 64 kppEKr~R~PSAYN~FMKeEIqRiKa~nPdisH--KEAFs~AAkNWa~~ 110 (196)
+-|.++.|.+|||..|+++.-..|+++||+++. .|.-+.++..|+..
T Consensus 3 kdp~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~l 51 (83)
T 1aab_A 3 GDPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTM 51 (83)
T ss_dssp CCTTCCCCCCCHHHHHHHHHHHHHTTSCTTTCCCSSSSHHHHHHHHTTS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhC
Confidence 456778899999999999999999999999975 99999999999864
No 21
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=97.63 E-value=9.1e-05 Score=56.12 Aligned_cols=48 Identities=25% Similarity=0.437 Sum_probs=44.3
Q ss_pred cCCCccCCCCChhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC
Q 037247 63 NKPPEKRQRAPSAYNRFIKEEIRRLKTENPNMAHKEAFSTAAKNWAQC 110 (196)
Q Consensus 63 ~kppEKr~R~PSAYN~FMKeEIqRiKa~nPdisHKEAFs~AAkNWa~~ 110 (196)
.+.|.++.|.+|||..||++.-..|+.+||+++..|.-+.++..|+..
T Consensus 83 ~kdp~~pKrp~say~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~l 130 (159)
T 2gzk_A 83 FKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNT 130 (159)
T ss_dssp SCCTTCCCCCCCHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHS
T ss_pred ccccccccccccccchhhHhhHHHHHHhCCCCCHHHHHHHHHHHHHhC
Confidence 456777889999999999999999999999999999999999999964
No 22
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=97.59 E-value=0.00011 Score=49.87 Aligned_cols=42 Identities=21% Similarity=0.370 Sum_probs=39.2
Q ss_pred CCCCChhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC
Q 037247 69 RQRAPSAYNRFIKEEIRRLKTENPNMAHKEAFSTAAKNWAQC 110 (196)
Q Consensus 69 r~R~PSAYN~FMKeEIqRiKa~nPdisHKEAFs~AAkNWa~~ 110 (196)
..|.+|||..|+++.-..|++++|++++.|.-+.++..|+..
T Consensus 3 iKRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l 44 (79)
T 3u2b_C 3 IKRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLL 44 (79)
T ss_dssp CCCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhC
Confidence 467899999999999999999999999999999999999853
No 23
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=97.57 E-value=3.6e-05 Score=54.93 Aligned_cols=51 Identities=27% Similarity=0.373 Sum_probs=46.4
Q ss_pred ccCCCccCCCCChhhhHHHHHHHHHHHhcCCCCC--HHHHHHHHHHhhccCCC
Q 037247 62 VNKPPEKRQRAPSAYNRFIKEEIRRLKTENPNMA--HKEAFSTAAKNWAQCPP 112 (196)
Q Consensus 62 ~~kppEKr~R~PSAYN~FMKeEIqRiKa~nPdis--HKEAFs~AAkNWa~~P~ 112 (196)
..+.|.++.|.+|||..|+++.-..|+++||+++ +.|.-+.++..|+..++
T Consensus 16 ~~kdp~~pKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~ 68 (97)
T 2lhj_A 16 AKKDPNAPKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAWNALSD 68 (97)
T ss_dssp TTSCCCCCCCCCCSSTHHHHGGGGGHHHHCTTSTTCSSHHHHHHHHTSSSSCS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHhCCH
Confidence 3567788899999999999999999999999999 99999999999997654
No 24
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.57 E-value=0.0001 Score=56.87 Aligned_cols=48 Identities=25% Similarity=0.461 Sum_probs=44.0
Q ss_pred CCCccCCCCChhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCC
Q 037247 64 KPPEKRQRAPSAYNRFIKEEIRRLKTENPNMAHKEAFSTAAKNWAQCP 111 (196)
Q Consensus 64 kppEKr~R~PSAYN~FMKeEIqRiKa~nPdisHKEAFs~AAkNWa~~P 111 (196)
+-|.++.|.+|||..|+++....|+.++|+++..|.-+.++..|+..+
T Consensus 97 kdp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~ls 144 (173)
T 2yrq_A 97 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTA 144 (173)
T ss_dssp CCSSSCCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSC
T ss_pred cCCccccCcccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCC
Confidence 456777889999999999999999999999999999999999999753
No 25
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=97.53 E-value=3.7e-05 Score=54.66 Aligned_cols=48 Identities=27% Similarity=0.456 Sum_probs=44.0
Q ss_pred cCCCccCCCCChhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC
Q 037247 63 NKPPEKRQRAPSAYNRFIKEEIRRLKTENPNMAHKEAFSTAAKNWAQC 110 (196)
Q Consensus 63 ~kppEKr~R~PSAYN~FMKeEIqRiKa~nPdisHKEAFs~AAkNWa~~ 110 (196)
.+.|.+..|.+|||..|+++.-..|+++||+++..|.-+.++..|+..
T Consensus 15 ~kdp~~pKrP~saf~lF~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~l 62 (93)
T 1cg7_A 15 KKDPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKAL 62 (93)
T ss_dssp CCCSSCCCSCCCHHHHHHHHHTSTTTTTCTTSCHHHHTTTHHHHHHTT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhC
Confidence 456777889999999999999999999999999999999999999954
No 26
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=97.51 E-value=0.00017 Score=50.18 Aligned_cols=43 Identities=12% Similarity=0.189 Sum_probs=39.7
Q ss_pred cCCCCChhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC
Q 037247 68 KRQRAPSAYNRFIKEEIRRLKTENPNMAHKEAFSTAAKNWAQC 110 (196)
Q Consensus 68 Kr~R~PSAYN~FMKeEIqRiKa~nPdisHKEAFs~AAkNWa~~ 110 (196)
+..|.+|||..|+++.-+.|+++||++++.|.-+.++..|+..
T Consensus 2 ~pKRP~naf~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~l 44 (86)
T 2lef_A 2 HIKKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHAL 44 (86)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTS
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcC
Confidence 3567899999999999999999999999999999999999853
No 27
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.46 E-value=0.00024 Score=50.40 Aligned_cols=45 Identities=9% Similarity=0.305 Sum_probs=40.8
Q ss_pred CccCCCCChhhhHHHHHHHHHHHhcCCCCC-HHHHHHHHHHhhccC
Q 037247 66 PEKRQRAPSAYNRFIKEEIRRLKTENPNMA-HKEAFSTAAKNWAQC 110 (196)
Q Consensus 66 pEKr~R~PSAYN~FMKeEIqRiKa~nPdis-HKEAFs~AAkNWa~~ 110 (196)
|.++.|.+|||..||++.-..|+.+||+++ ..|.-+.++..|+..
T Consensus 3 ~~~PKRP~say~lF~~e~R~~ik~~~P~~~~~~eisK~lge~Wk~l 48 (81)
T 2d7l_A 3 SGSSGRPKTGFQMWLEENRSNILSDNPDFSDEADIIKEGMIRFRVL 48 (81)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHHHHCTTCCSHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHcC
Confidence 445678899999999999999999999998 999999999999853
No 28
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.38 E-value=0.00027 Score=54.48 Aligned_cols=48 Identities=19% Similarity=0.362 Sum_probs=44.2
Q ss_pred cCCCccCCCCChhhhHHHHHHHHHHHhcCCC--CCHHHHHHHHHHhhccC
Q 037247 63 NKPPEKRQRAPSAYNRFIKEEIRRLKTENPN--MAHKEAFSTAAKNWAQC 110 (196)
Q Consensus 63 ~kppEKr~R~PSAYN~FMKeEIqRiKa~nPd--isHKEAFs~AAkNWa~~ 110 (196)
.+.|.++.|.+|||..||++....|+..||+ |+..|..+.++..|+..
T Consensus 10 k~dp~~PKrp~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~l 59 (173)
T 2yrq_A 10 KGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTM 59 (173)
T ss_dssp SCCSSSCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhC
Confidence 4677888999999999999999999999999 68999999999999864
No 29
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=97.16 E-value=0.00035 Score=56.59 Aligned_cols=46 Identities=28% Similarity=0.530 Sum_probs=42.1
Q ss_pred CccCCCCChhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCC
Q 037247 66 PEKRQRAPSAYNRFIKEEIRRLKTENPNMAHKEAFSTAAKNWAQCP 111 (196)
Q Consensus 66 pEKr~R~PSAYN~FMKeEIqRiKa~nPdisHKEAFs~AAkNWa~~P 111 (196)
|.++.|.+|||..||++....|+.+||+++..|..+.++..|+..+
T Consensus 7 p~~PKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lge~Wk~Ls 52 (214)
T 3tq6_A 7 ASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELP 52 (214)
T ss_dssp HHSCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHccC
Confidence 4566789999999999999999999999999999999999999744
No 30
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=97.06 E-value=0.00048 Score=56.58 Aligned_cols=49 Identities=27% Similarity=0.477 Sum_probs=43.9
Q ss_pred cCCCccCCCCChhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCC
Q 037247 63 NKPPEKRQRAPSAYNRFIKEEIRRLKTENPNMAHKEAFSTAAKNWAQCP 111 (196)
Q Consensus 63 ~kppEKr~R~PSAYN~FMKeEIqRiKa~nPdisHKEAFs~AAkNWa~~P 111 (196)
.+-|.++.|.+|||..||++....|+.+||+++..|..+.++..|+...
T Consensus 36 ~~~p~~PKrP~say~lF~~e~r~~~k~~~P~~~~~eisk~lge~Wk~Ls 84 (238)
T 3tmm_A 36 SVLASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELP 84 (238)
T ss_dssp CHHHHSCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCC
Confidence 3446677889999999999999999999999999999999999999643
No 31
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=96.90 E-value=0.0015 Score=49.48 Aligned_cols=45 Identities=20% Similarity=0.412 Sum_probs=41.7
Q ss_pred CccCCCCChhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC
Q 037247 66 PEKRQRAPSAYNRFIKEEIRRLKTENPNMAHKEAFSTAAKNWAQC 110 (196)
Q Consensus 66 pEKr~R~PSAYN~FMKeEIqRiKa~nPdisHKEAFs~AAkNWa~~ 110 (196)
|.+..|.++||-.|++++-.+|+..||+++..|.-+.++..|+..
T Consensus 2 ~~~~Krp~~af~~~~~~~~~ki~~~~P~~~~~eisk~lg~~Wk~l 46 (159)
T 2gzk_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKML 46 (159)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHS
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHh
Confidence 567788899999999999999999999999999999999999853
No 32
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=96.75 E-value=0.0021 Score=47.59 Aligned_cols=41 Identities=12% Similarity=0.143 Sum_probs=38.3
Q ss_pred cCCCCChhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcc
Q 037247 68 KRQRAPSAYNRFIKEEIRRLKTENPNMAHKEAFSTAAKNWAQ 109 (196)
Q Consensus 68 Kr~R~PSAYN~FMKeEIqRiKa~nPdisHKEAFs~AAkNWa~ 109 (196)
|+.|.+|||+.||.+.+..+++.+|+ +..|.=+.+...|+.
T Consensus 4 kPKrP~SAy~lf~~~~r~~~k~~~p~-~~~evsK~lGe~Wk~ 44 (91)
T 1l8y_A 4 LPESPKRAEEIWQQSVIGDYLARFKN-DRVKALKAMEMTWNN 44 (91)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHTTS-THHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhc
Confidence 55778999999999999999999999 999999999999996
No 33
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=96.71 E-value=0.0015 Score=43.31 Aligned_cols=40 Identities=33% Similarity=0.636 Sum_probs=35.1
Q ss_pred cCCCCChhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCC
Q 037247 68 KRQRAPSAYNRFIKEEIRRLKTENPNMAHKEAFSTAAKNWAQCP 111 (196)
Q Consensus 68 Kr~R~PSAYN~FMKeEIqRiKa~nPdisHKEAFs~AAkNWa~~P 111 (196)
++.|.+|||..||++.-..|+..+| .|..+.++..|+..+
T Consensus 2 ~PKrP~say~~F~~~~r~~~k~~~p----~ei~k~lg~~Wk~ls 41 (67)
T 3fgh_A 2 KPKRPRSAYNVYVAERFQEAKGDSP----QEKLKTVKENWKNLS 41 (67)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSSH----HHHHHHHHHHHHTCC
T ss_pred cCCCCCCHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHhhCC
Confidence 4577899999999999999999887 599999999999643
No 34
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=95.91 E-value=0.011 Score=43.58 Aligned_cols=45 Identities=16% Similarity=0.392 Sum_probs=39.0
Q ss_pred cCCCccC-CCCChhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCC
Q 037247 63 NKPPEKR-QRAPSAYNRFIKEEIRRLKTENPNMAHKEAFSTAAKNWAQCP 111 (196)
Q Consensus 63 ~kppEKr-~R~PSAYN~FMKeEIqRiKa~nPdisHKEAFs~AAkNWa~~P 111 (196)
.|-|.++ .|.+|||..||++.-..|+ +++..|.-+.++..|+..+
T Consensus 11 ~kd~~~P~KrP~say~lF~~e~r~~~k----~~~~~eisk~lg~~Wk~Ls 56 (108)
T 1v64_A 11 DKFDGRPTKPPPNSYSLYCAELMANMK----DVPSTERMVLCSQQWKLLS 56 (108)
T ss_dssp CCTTTSCCCCCSSHHHHHHHHHHHHCT----TSCHHHHHHHHHHHHHHSC
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhCC
Confidence 3556666 7889999999999999998 8999999999999999743
No 35
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=95.82 E-value=0.014 Score=42.35 Aligned_cols=41 Identities=17% Similarity=0.378 Sum_probs=32.6
Q ss_pred cCCCCChhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC
Q 037247 68 KRQRAPSAYNRFIKEEIRRLKTENPNMAHKEAFSTAAKNWAQC 110 (196)
Q Consensus 68 Kr~R~PSAYN~FMKeEIqRiKa~nPdisHKEAFs~AAkNWa~~ 110 (196)
++.|.+|||..||++.+. +-.+|+++..|.-+.++..|+..
T Consensus 8 ~PKrP~say~lF~~e~~~--~p~~~~~~~~eisK~lge~Wk~l 48 (101)
T 1v63_A 8 PKKPPMNGYQKFSQELLS--NGELNHLPLKERMVEIGSRWQRI 48 (101)
T ss_dssp SCCCCSSSHHHHHHHHHH--HCTTTTSCHHHHHHHHHHHHTTS
T ss_pred CCCCCCCHHHHHHHHHHh--CCCCCCCCHHHHHHHHHHHHHhC
Confidence 345679999999999964 33455577899999999999953
No 36
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=95.39 E-value=0.0055 Score=50.30 Aligned_cols=43 Identities=30% Similarity=0.544 Sum_probs=38.1
Q ss_pred CCccCCCCChhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCC
Q 037247 65 PPEKRQRAPSAYNRFIKEEIRRLKTENPNMAHKEAFSTAAKNWAQCP 111 (196)
Q Consensus 65 ppEKr~R~PSAYN~FMKeEIqRiKa~nPdisHKEAFs~AAkNWa~~P 111 (196)
.|.++.|.+|||+.||++...+|+.++|+ |..+.++..|+..+
T Consensus 143 dp~~PKrP~say~lF~~e~r~~~k~~~p~----ei~k~lg~~Wk~ls 185 (238)
T 3tmm_A 143 LLGKPKRPRSAYNVYVAERFQEAKGDSPQ----EKLKTVKENWKNLS 185 (238)
T ss_dssp HTTCCCCCCCHHHHHHHHHTTTSCCSSHH----HHHHHHHHHHHTCC
T ss_pred ccCCCCCCCcHHHHHHHHHHHHHhccCHH----HHHHHHHHHHHhCC
Confidence 46677889999999999999999988876 89999999999754
No 37
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=95.26 E-value=0.0062 Score=49.25 Aligned_cols=42 Identities=31% Similarity=0.554 Sum_probs=37.5
Q ss_pred CCccCCCCChhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC
Q 037247 65 PPEKRQRAPSAYNRFIKEEIRRLKTENPNMAHKEAFSTAAKNWAQC 110 (196)
Q Consensus 65 ppEKr~R~PSAYN~FMKeEIqRiKa~nPdisHKEAFs~AAkNWa~~ 110 (196)
.|.++.|.+|||+.||++....|+.++|+ |.-+.++..|+..
T Consensus 111 dp~~PKrP~say~lF~~e~r~~~k~~~p~----ei~k~lg~~Wk~l 152 (214)
T 3tq6_A 111 LLGKPKRPRSAYNVYVAERFQEAKGDSPQ----EKLKTVKENWKNL 152 (214)
T ss_dssp HTTCCCCCCCHHHHHHHHHTTTSSCSSHH----HHHHHHHHHHHTC
T ss_pred cccCcccccchhhhhHHHHHHhhccCCHH----HHHHHHHHHHHcC
Confidence 46677889999999999999999988876 8999999999964
No 38
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=94.67 E-value=0.0054 Score=45.12 Aligned_cols=44 Identities=20% Similarity=0.230 Sum_probs=35.4
Q ss_pred CCccCCCCChhhhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccC
Q 037247 65 PPEKRQRAPSAYNRFIKEEIRRLKTENPNMAHKEAFSTAAKNWAQC 110 (196)
Q Consensus 65 ppEKr~R~PSAYN~FMKeEIqRiKa~nPdisHKEAFs~AAkNWa~~ 110 (196)
-|-.+.|.||||-.||.+.-..||.+||+|+ +.|..+|..|+..
T Consensus 19 DpnaPKRp~sAf~lf~~e~R~kik~enP~~s--~~~~eIse~Wk~l 62 (90)
T 2yuk_A 19 EEALGEMATVAPVLYTNINFPNLKEEFPDWT--TRVKQIAKLWRKA 62 (90)
T ss_dssp HHHHGGGCSSSHHHHHHHHCTTHHHHCCSHH--HHHHHHHHHHHHS
T ss_pred CCCCCCCCccHHHHHHHHhHHHHHHHCcCcc--chHHHHHHHHHcC
Confidence 3455678999999999999999999999986 2355556999863
No 39
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.99 E-value=0.071 Score=38.99 Aligned_cols=43 Identities=21% Similarity=0.416 Sum_probs=36.3
Q ss_pred CccCCCCChhhhHHHHHHHHHHHhcCCCCCHHHHHHHH---HHhhccC
Q 037247 66 PEKRQRAPSAYNRFIKEEIRRLKTENPNMAHKEAFSTA---AKNWAQC 110 (196)
Q Consensus 66 pEKr~R~PSAYN~FMKeEIqRiKa~nPdisHKEAFs~A---AkNWa~~ 110 (196)
+.++.|.+|||..||++.-.+||.+ +++-.|.=+.+ ...|+..
T Consensus 8 ~~~PKRP~sAf~lF~~e~R~~ik~e--~~~~~eisK~l~~cGe~Wk~l 53 (93)
T 2cto_A 8 MPNRKASRNAYYFFVQEKIPELRRR--GLPVARVADAIPYCSSDWALL 53 (93)
T ss_dssp CCCCCSSCCHHHHHHHTTHHHHHHH--TCCCSSHHHHTGGGHHHHHHS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHcC
Confidence 3456788999999999999999998 78888877777 9999864
No 40
>2d3o_1 Trigger factor, TF; ribosome, nascent chain, protein folding, SRP; 3.35A {Deinococcus radiodurans} PDB: 2aar_7
Probab=43.87 E-value=9.5 Score=27.69 Aligned_cols=21 Identities=43% Similarity=0.623 Sum_probs=16.7
Q ss_pred hhhccCcccccCCCcchhhhh
Q 037247 140 VHVQGNGFRERKAPRHSFRAR 160 (196)
Q Consensus 140 ~~~~~qgF~~rKvpR~s~~~~ 160 (196)
.+..+.|||-+||||.-|-.+
T Consensus 36 k~~~ipGFRkGKvP~~vi~k~ 56 (112)
T 2d3o_1 36 RDVRVPGFRPGKAPRKVIENR 56 (112)
T ss_dssp TTSCBTTBCTTCCCSTTHHHH
T ss_pred hhCCCCCcCCCCCCHHHHHHH
Confidence 467899999999999855443
No 41
>2nsc_A Trigger factor, TF; chaperone; 2.20A {Thermotoga maritima} PDB: 2nsb_A
Probab=42.47 E-value=8.4 Score=27.84 Aligned_cols=20 Identities=25% Similarity=0.562 Sum_probs=16.1
Q ss_pred hhhccCcccccCCCcchhhh
Q 037247 140 VHVQGNGFRERKAPRHSFRA 159 (196)
Q Consensus 140 ~~~~~qgF~~rKvpR~s~~~ 159 (196)
.+..+.|||-+||||.-|..
T Consensus 37 k~~~ipGFRkGKvP~~vi~k 56 (109)
T 2nsc_A 37 QRVEIPGFRKGRIPKNVLKM 56 (109)
T ss_dssp TTCCCTTSCTTCCCHHHHHH
T ss_pred ccCCCCCcCCCCCCHHHHHH
Confidence 46789999999999985443
No 42
>1p9y_A Trigger factor, TF; alpha-beta protein, isomerase; 2.15A {Escherichia coli} SCOP: d.241.2.1 PDB: 1oms_A*
Probab=37.23 E-value=11 Score=27.68 Aligned_cols=20 Identities=25% Similarity=0.383 Sum_probs=16.0
Q ss_pred hhhccCcccccCCCcchhhh
Q 037247 140 VHVQGNGFRERKAPRHSFRA 159 (196)
Q Consensus 140 ~~~~~qgF~~rKvpR~s~~~ 159 (196)
.+..+.|||-+||||.-|-.
T Consensus 40 k~v~ipGFRkGKvP~~vi~k 59 (121)
T 1p9y_A 40 KKVRIDGLRKGKVPMNIVAQ 59 (121)
T ss_dssp TTCCCTTSCTTCSCHHHHHH
T ss_pred hhCccCCcCCCCCCHHHHHH
Confidence 46789999999999975443
Done!