BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037248
(199 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LUJ5|EBP2_ARATH Probable rRNA-processing protein EBP2 homolog OS=Arabidopsis
thaliana GN=At3g22660 PE=2 SV=1
Length = 293
Score = 203 bits (516), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 98/146 (67%), Positives = 119/146 (81%), Gaps = 2/146 (1%)
Query: 17 EDEDLSDLNEEEDV--KLAEPSKQAVYNRDGLEEKLQDIGWPENAGWIHKLTIDIDQEQE 74
E E LSD + E ++ KLAEP+K A+YNRDGL +KLQDI WPE+ W HKLT++IDQ
Sbjct: 25 EAESLSDSDTENEITEKLAEPTKTAIYNRDGLLDKLQDISWPEDVDWTHKLTVEIDQGGA 84
Query: 75 VDVNDDLKREASFYTQALEGTRQAFEKLQSMGLPFLRPADYYAEMVKSDAHMEKVKCLLL 134
VDVNDDL RE +FYTQALEGTR+AF KL MG+ FLRPA+YYAEMVKSD HMEKVK LL
Sbjct: 85 VDVNDDLARETAFYTQALEGTREAFGKLNEMGVNFLRPANYYAEMVKSDVHMEKVKSRLL 144
Query: 135 SEQKEIEEAEERKKAREAKKLAKEIQ 160
E+K+IEE+EER+KAR+ K++AKE+Q
Sbjct: 145 HEKKQIEESEERRKARDNKRMAKEVQ 170
>sp|O13802|EBP2_SCHPO Probable rRNA-processing protein ebp2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ebp2 PE=1 SV=1
Length = 333
Score = 87.4 bits (215), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 84/155 (54%), Gaps = 3/155 (1%)
Query: 7 ESTFSDEDGFEDEDLSDLNEEEDVKLAEPSKQAVYNRDGLEEKLQDIGWPENAGWIHKLT 66
ES SDE E DL + EED L K A+ N LE + I +P++ ++
Sbjct: 63 ESEGSDE--VELSDLEGIELEEDADLIRKRKLAINNTVALENIYERIKYPDDISFVENQA 120
Query: 67 IDIDQEQEV-DVNDDLKREASFYTQALEGTRQAFEKLQSMGLPFLRPADYYAEMVKSDAH 125
+ + + +V DDL RE +FY Q + + AF KL+ + RP DY+AEM+KSD H
Sbjct: 121 VTTKEPIIIENVEDDLARELAFYKQGVSSVKAAFAKLREANVLISRPHDYFAEMLKSDDH 180
Query: 126 MEKVKCLLLSEQKEIEEAEERKKAREAKKLAKEIQ 160
MEKV+ L+ E + +++ KK RE KK K++Q
Sbjct: 181 MEKVRQELIKEATAKKLSQQAKKQRELKKFGKQVQ 215
>sp|P36049|EBP2_YEAST rRNA-processing protein EBP2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=EBP2 PE=1 SV=1
Length = 427
Score = 87.0 bits (214), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 90/155 (58%), Gaps = 4/155 (2%)
Query: 18 DEDLSDLNEEEDVKLAEPSKQAVYNRDGLEEKLQDIG--WPENAGWIHK-LTIDIDQEQE 74
D LSD+ + D + K V N ++ L+ + W +++ H+ +T + + ++
Sbjct: 173 DVPLSDVEFDSDADVVPHHKLTVNNTKAMKHALERVQLPWKKHSFQEHQSVTSETNTDEH 232
Query: 75 V-DVNDDLKREASFYTQALEGTRQAFEKLQSMGLPFLRPADYYAEMVKSDAHMEKVKCLL 133
+ D+ DD +RE +FY Q+L+ A ++L+ + +PF RP DY+AEMVKSD HM+K+K L
Sbjct: 233 IKDIYDDTERELAFYKQSLDAVLVARDELKRLKVPFKRPLDYFAEMVKSDEHMDKIKGKL 292
Query: 134 LSEQKEIEEAEERKKAREAKKLAKEIQEIGLVGRQ 168
+ E + + EE ++ R+ KK K++Q L RQ
Sbjct: 293 IEEASDKKAREEARRQRQLKKFGKQVQNATLQKRQ 327
>sp|Q09958|EBP2_CAEEL Probable rRNA-processing protein EBP2 homolog OS=Caenorhabditis
elegans GN=C18A3.3 PE=1 SV=2
Length = 340
Score = 80.9 bits (198), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 80/136 (58%), Gaps = 7/136 (5%)
Query: 37 KQAVYNRDG-LEEKLQDIGWPENAGWIHKLTIDIDQEQEVDV---NDDLKREASFYTQAL 92
K+ + N+ ++EKL +I ++ W+ L + + E+D NDD +RE +FY QA
Sbjct: 82 KRPIINKSAEMKEKLAEIT--KDLPWVETLEV-VTPHSEMDKKVENDDFQRELNFYKQAE 138
Query: 93 EGTRQAFEKLQSMGLPFLRPADYYAEMVKSDAHMEKVKCLLLSEQKEIEEAEERKKAREA 152
+ + A+ +L ++G+ LRP DYYAEM KSD HM+KV+ LL Q+ E E ++ RE
Sbjct: 139 KAVQIAYPRLLNLGIKVLRPTDYYAEMAKSDTHMQKVRKRLLGIQEMKERQEAFRRIREE 198
Query: 153 KKLAKEIQEIGLVGRQ 168
KK A ++Q+ L +
Sbjct: 199 KKFAVKVQKEVLAAKN 214
>sp|Q99848|EBP2_HUMAN Probable rRNA-processing protein EBP2 OS=Homo sapiens GN=EBNA1BP2
PE=1 SV=2
Length = 306
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 81/157 (51%), Gaps = 16/157 (10%)
Query: 34 EPSKQAVYNRDGLEEKL----QDIGW-----------PENAGWIHKLTIDIDQEQEVDVN 78
E K+AV + +GL++ L +D+ W PE G + DQ+ VD
Sbjct: 41 EGPKKAVNDVNGLKQCLAEFKRDLEWVERLDVTLGPVPEIGGSEAPAPQNKDQK-AVDPE 99
Query: 79 DDLKREASFYTQALEGTRQAFEKLQSMGLPFLRPADYYAEMVKSDAHMEKVKCLLLSEQK 138
DD +RE SFY QA +L + +P RP DY+AEM KSD M+K++ L ++Q
Sbjct: 100 DDFQREMSFYRQAQAAVLAVLPRLHQLKVPTKRPTDYFAEMAKSDLQMQKIRQKLQTKQA 159
Query: 139 EIEEAEERKKAREAKKLAKEIQEIGLVGRQEKVVVVM 175
+E +E+ K+ R +K K++Q L RQ++ +M
Sbjct: 160 AMERSEKAKQLRALRKYGKKVQTEVLQKRQQEKAHMM 196
>sp|Q9D903|EBP2_MOUSE Probable rRNA-processing protein EBP2 OS=Mus musculus GN=Ebna1bp2
PE=2 SV=1
Length = 306
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 86/163 (52%), Gaps = 19/163 (11%)
Query: 29 DVKLAEPSKQAVYNRDGLEEKLQDIGWPENAGWIHKLTIDI----------------DQE 72
+V L +P K+AV + GL++ L + + + W+ +L + + DQ+
Sbjct: 37 NVVLEKP-KKAVNDVSGLKQCLAE--FRRDLEWVERLDVTLGPVPEVSETQPTPQNQDQK 93
Query: 73 QEVDVNDDLKREASFYTQALEGTRQAFEKLQSMGLPFLRPADYYAEMVKSDAHMEKVKCL 132
+ V+ DD +RE SFY QA +L + +P RP DY+AEM KSD M+K++
Sbjct: 94 KGVNPEDDFQREMSFYRQAQAAVLAVLPRLHQLQVPTKRPTDYFAEMAKSDQQMQKIRQK 153
Query: 133 LLSEQKEIEEAEERKKAREAKKLAKEIQEIGLVGRQEKVVVVM 175
L ++Q +E++E+ K+ R +K K++Q L RQ + +M
Sbjct: 154 LQTKQAAMEKSEKAKQLRALRKYGKKVQTEVLQKRQREKAHMM 196
>sp|Q9I8J6|EBP2_XENLA Probable rRNA-processing protein EBP2 OS=Xenopus laevis GN=ebna1bp2
PE=2 SV=1
Length = 312
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 80/156 (51%), Gaps = 17/156 (10%)
Query: 34 EPSKQAVYNRDGLEEKLQDIGWPENAGWIHKLTIDID-------QEQEVDVN-------D 79
E K+ + GL++ L+D+ W+ +L + +D Q + D N D
Sbjct: 44 EGKKKPFNDASGLKQSLKDLK--NELPWVERLDVTVDPVVDTTGQNGQTDPNTSDINAED 101
Query: 80 DLKREASFYTQALEGTRQAFEKLQSMGLPFLRPADYYAEMVKSDAHMEKVKCLLLSEQKE 139
D +RE FY QA + +L+ + + RP DY+AEM K+D HM+K++ L +Q
Sbjct: 102 DFQREMCFYRQAQAAVLYSLPRLRKLKVATKRPDDYFAEMAKTDQHMQKIRHKLQLKQAS 161
Query: 140 IEEAEERKKAREAKKLAKEIQEIGLVGRQ-EKVVVV 174
+E++E+ K+ R +K K++Q L RQ EK +V
Sbjct: 162 MEKSEKAKQLRALRKYGKKVQVEVLQKRQKEKSAMV 197
>sp|Q9V9Z9|EBP2_DROME Probable rRNA-processing protein EBP2 homolog OS=Drosophila
melanogaster GN=CG1542 PE=2 SV=1
Length = 307
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 57/95 (60%), Gaps = 6/95 (6%)
Query: 77 VNDDLKREASFYTQALEGTRQAFEKLQSMGLPFLRPADYYAEMVKSDAHMEKVKCLLLSE 136
V +D KRE F+ QA +A +L +G+ RP DY+AEM KSD HM+KV+ L+++
Sbjct: 114 VLNDFKREMLFHRQAQSAVLEAIPRLHELGIKTRRPDDYFAEMAKSDEHMQKVRANLMAK 173
Query: 137 QKEIEEAEERKKAREAKKLAKEIQEIGLVGRQEKV 171
Q+ ++E K+ RE +K+ K ++ +Q KV
Sbjct: 174 QQGQAKSERIKQIREQRKMGK------MLAKQTKV 202
>sp|Q9Y6N6|LAMC3_HUMAN Laminin subunit gamma-3 OS=Homo sapiens GN=LAMC3 PE=1 SV=3
Length = 1575
Score = 35.0 bits (79), Expect = 0.29, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 15/82 (18%)
Query: 89 TQALEGTRQAFEKLQSMGLPFLRPADYYAEMVKSDAHMEKVKCLLLSEQKEIEEAEE--- 145
T + G R L+ M L F RP D A K+D+ ++ LL +K+ ++AE
Sbjct: 1329 TVTVMGARTLLADLEGMKLQFPRPKDQAALQRKADSVSDR---LLADTRKKTKQAERMLG 1385
Query: 146 ---------RKKAREAKKLAKE 158
+KK REA+ LAK+
Sbjct: 1386 NAAPLSSSAKKKGREAEVLAKD 1407
>sp|Q09933|DIS1_SCHPO Phosphoprotein p93 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=dis1 PE=1 SV=1
Length = 882
Score = 30.4 bits (67), Expect = 8.8, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 127 EKVKCLLLSEQKEIEEAEERKKAREAKKLAKEIQEIGLVGRQEKVVVVMVEREKGRRIET 186
EKV+ LL E+K I + +E + A E ++L +EI ++ + + K V E+E +
Sbjct: 690 EKVELDLLREEKAIRQVQEAEDALERERLFREINDLQIQNAEMKEQV--YEKESTISQKE 747
Query: 187 LEIPSLALE 195
+EI SL E
Sbjct: 748 VEITSLRNE 756
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.131 0.357
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,090,046
Number of Sequences: 539616
Number of extensions: 3190298
Number of successful extensions: 16567
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 246
Number of HSP's that attempted gapping in prelim test: 16077
Number of HSP's gapped (non-prelim): 646
length of query: 199
length of database: 191,569,459
effective HSP length: 112
effective length of query: 87
effective length of database: 131,132,467
effective search space: 11408524629
effective search space used: 11408524629
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 58 (26.9 bits)