Query 037248
Match_columns 199
No_of_seqs 112 out of 220
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 10:17:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037248.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037248hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05890 Ebp2: Eukaryotic rRNA 100.0 4.9E-59 1.1E-63 410.2 17.1 148 33-181 24-174 (271)
2 KOG3080 Nucleolar protein-like 100.0 3.3E-51 7.1E-56 364.6 16.7 145 34-181 80-236 (328)
3 cd05510 Bromo_SPT7_like Bromod 52.6 24 0.00053 27.5 4.1 48 85-134 6-59 (112)
4 cd05497 Bromo_Brdt_I_like Brom 44.9 40 0.00086 25.9 4.1 32 103-135 20-59 (107)
5 PHA02585 16 small terminase pr 43.2 82 0.0018 26.9 6.0 68 72-144 39-110 (161)
6 cd05522 Bromo_Rsc1_2_II Bromod 40.7 35 0.00077 26.0 3.2 47 88-135 2-59 (104)
7 cd05496 Bromo_WDR9_II Bromodom 38.1 66 0.0014 25.4 4.5 50 84-135 3-57 (119)
8 TIGR03665 arCOG04150 arCOG0415 36.7 30 0.00065 28.7 2.5 44 93-136 50-106 (172)
9 PF02208 Sorb: Sorbin homologo 32.3 19 0.00041 24.9 0.5 19 104-122 14-35 (47)
10 PF02946 GTF2I: GTF2I-like rep 32.2 20 0.00043 27.0 0.6 13 105-117 44-56 (76)
11 cd05495 Bromo_cbp_like Bromodo 31.0 65 0.0014 24.7 3.3 40 95-135 8-58 (108)
12 PLN03086 PRLI-interacting fact 30.8 2.2E+02 0.0047 28.7 7.7 14 172-185 64-77 (567)
13 cd05498 Bromo_Brdt_II_like Bro 30.7 86 0.0019 23.3 3.9 30 105-135 20-57 (102)
14 PF10932 DUF2783: Protein of u 29.8 55 0.0012 23.7 2.5 27 108-134 6-37 (60)
15 cd05499 Bromo_BDF1_2_II Bromod 28.0 81 0.0018 23.6 3.4 31 104-135 19-57 (102)
16 KOG4650 Predicted steroid redu 27.9 46 0.00099 30.7 2.3 34 87-120 193-234 (311)
17 KOG3654 Uncharacterized CH dom 27.8 2E+02 0.0043 29.2 6.7 35 115-149 378-412 (708)
18 PF02388 FemAB: FemAB family; 27.1 4.9E+02 0.011 24.3 9.0 66 87-160 199-283 (406)
19 cd05505 Bromo_WSTF_like Bromod 27.0 86 0.0019 23.7 3.4 31 103-134 15-51 (97)
20 PRK15327 type III secretion sy 26.2 72 0.0016 30.5 3.4 96 35-131 219-343 (393)
21 cd05528 Bromo_AAA Bromodomain; 25.3 1.4E+02 0.0029 23.2 4.3 46 89-135 2-55 (112)
22 TIGR00598 rad14 DNA repair pro 25.3 1.6E+02 0.0034 25.3 4.9 31 138-168 98-128 (172)
23 PF08566 Pam17: Mitochondrial 25.1 2.2E+02 0.0047 24.5 5.7 22 101-122 124-151 (173)
24 PF10454 DUF2458: Protein of u 23.2 2.5E+02 0.0053 23.2 5.6 54 77-135 84-142 (150)
25 cd07250 HPPD_C_like C-terminal 21.6 78 0.0017 26.2 2.4 26 95-120 94-120 (191)
26 cd05515 Bromo_polybromo_V Brom 21.3 1.2E+02 0.0026 23.0 3.2 44 90-134 3-57 (105)
27 KOG0289 mRNA splicing factor [ 21.1 1.6E+02 0.0035 29.1 4.7 76 78-161 108-194 (506)
28 cd05506 Bromo_plant1 Bromodoma 20.8 1.3E+02 0.0029 22.1 3.3 32 103-135 15-54 (99)
29 cd05513 Bromo_brd7_like Bromod 20.1 1.6E+02 0.0035 22.3 3.7 31 103-134 16-52 (98)
No 1
>PF05890 Ebp2: Eukaryotic rRNA processing protein EBP2; InterPro: IPR008610 This family consists of several eukaryotic rRNA processing protein EBP2 sequences. Ebp2p is required for the maturation of 25S rRNA and 60S subunit assembly. Ebp2p may be one of the target proteins of Rrs1p for executing the signal to regulate ribosome biogenesis [].
Probab=100.00 E-value=4.9e-59 Score=410.16 Aligned_cols=148 Identities=47% Similarity=0.723 Sum_probs=138.2
Q ss_pred cCCCCCcccCHHHHHHHHHhcCCCCCCCcceeeeeccCCCcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 037248 33 AEPSKQAVYNRDGLEEKLQDIGWPENAGWIHKLTIDIDQEQE---VDVNDDLKREASFYTQALEGTRQAFEKLQSMGLPF 109 (199)
Q Consensus 33 a~~~k~~InN~~~L~~kL~eI~~~~~lpWiEtL~vt~~~~~~---vDv~DDl~RE~aFY~QAl~aV~~a~~~L~~~gIpf 109 (199)
+.+.+.+|||+++|.++|++|.|+.++||+|||+||++.+.. .|++|||+||++||+|||+||++|+++|+++||||
T Consensus 24 ~~~~k~~inn~~~L~~kl~ei~~~~~~pWiE~L~vts~~~~~~~~~d~~dD~~RE~aFy~qAl~av~~a~~~L~~~gip~ 103 (271)
T PF05890_consen 24 APEQKKAINNKEALKQKLKEIKLPKKLPWIETLDVTSPEPTDEQIKDVNDDLKRELAFYKQALEAVKEARPRLKKLGIPF 103 (271)
T ss_pred cccccccccCHHHHHHHHHHhcccCCCCCeeEEeeecCccchhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 677999999999999999999998899999999999876654 48999999999999999999999999999999999
Q ss_pred CCCCchhhhhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHhhc
Q 037248 110 LRPADYYAEMVKSDAHMEKVKCLLLSEQKEIEEAEERKKAREAKKLAKEIQEIGLVGRQEKVVVVMVEREKG 181 (199)
Q Consensus 110 ~RP~DYFAEMvKSD~HM~KVr~kLl~eq~~ie~sE~aKk~Re~KKfgKqVQ~ek~~eR~k~K~~~~~~r~~g 181 (199)
+||+||||||||||+||+|||++|+.++++|+++|++|++|++|||||+||++++++|+++|+ .+.++|+.
T Consensus 104 ~RP~DYfAEMvKSD~HM~KVr~kLl~~~~~ie~~E~~rk~Re~KKfgKqvQ~ek~~eR~keKk-~~le~Ik~ 174 (271)
T PF05890_consen 104 KRPDDYFAEMVKSDEHMEKVRQKLLKEQKRIEASEEARKQRELKKFGKQVQVEKLQERAKEKK-EMLEKIKK 174 (271)
T ss_pred cCCCcchHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999994 44444443
No 2
>KOG3080 consensus Nucleolar protein-like/EBNA1-binding protein [RNA processing and modification]
Probab=100.00 E-value=3.3e-51 Score=364.55 Aligned_cols=145 Identities=42% Similarity=0.655 Sum_probs=132.3
Q ss_pred CCCCCcccCHHHHHHHHHhcCCCCCCCcceeeeeccCC---------CccCC---CcchHHHHHHHHHHHHHHHHHHHHH
Q 037248 34 EPSKQAVYNRDGLEEKLQDIGWPENAGWIHKLTIDIDQ---------EQEVD---VNDDLKREASFYTQALEGTRQAFEK 101 (199)
Q Consensus 34 ~~~k~~InN~~~L~~kL~eI~~~~~lpWiEtL~vt~~~---------~~~vD---v~DDl~RE~aFY~QAl~aV~~a~~~ 101 (199)
++.+..||+..+|+++|.+|+ ..+||+|+|++++.- ...|. |+|||+|||+||+||++||+.|+++
T Consensus 80 e~~~d~in~~~~l~~kl~~ik--~~lew~E~ld~~~~~~~l~~ei~~~~~v~~~~~eDDf~RElaFYkQa~~aVl~A~~r 157 (328)
T KOG3080|consen 80 EGDKDAINKRDGLLDKLVAIK--NDLEWVERLDVISFVEPLTVEIDTDEAVIPNNPEDDFARELAFYKQALSAVLEAFPR 157 (328)
T ss_pred cCccchhhhhHHHHHHHHHHH--hccccccchhhhhccCccccccccCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999996 689999999998431 12333 4499999999999999999999999
Q ss_pred HHhCCCCCCCCCchhhhhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHhhc
Q 037248 102 LQSMGLPFLRPADYYAEMVKSDAHMEKVKCLLLSEQKEIEEAEERKKAREAKKLAKEIQEIGLVGRQEKVVVVMVEREKG 181 (199)
Q Consensus 102 L~~~gIpf~RP~DYFAEMvKSD~HM~KVr~kLl~eq~~ie~sE~aKk~Re~KKfgKqVQ~ek~~eR~k~K~~~~~~r~~g 181 (199)
|+.+||||.||+||||||+|||+||+|||++|+.+|++++++|++|++|++|||||+||.+++++||.+| +.+.+.++-
T Consensus 158 L~elgV~~~RP~DYfAEMaKSD~HMqKVr~~Li~eq~~ke~sE~ark~RelKKfgKqVQ~~~l~~Rq~EK-k~~lekiKk 236 (328)
T KOG3080|consen 158 LHELGVPFLRPTDYFAEMAKSDEHMQKVRQRLIKEQTAKERSEEARKQRELKKFGKQVQKAKLQERQREK-KETLEKIKK 236 (328)
T ss_pred HHHcCCCccCchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 666666665
No 3
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=52.60 E-value=24 Score=27.49 Aligned_cols=48 Identities=21% Similarity=0.450 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCCc------hhhhhhCChHHHHHHHHHHH
Q 037248 85 ASFYTQALEGTRQAFEKLQSMGLPFLRPAD------YYAEMVKSDAHMEKVKCLLL 134 (199)
Q Consensus 85 ~aFY~QAl~aV~~a~~~L~~~gIpf~RP~D------YFAEMvKSD~HM~KVr~kLl 134 (199)
..||. ++..+...+........||..|.| || +.+|..--...|+.+|-
T Consensus 6 ~~~~~-~~~~il~~l~~~~~~s~~F~~pv~~~~~pdY~-~iIk~PmdL~tI~~kl~ 59 (112)
T cd05510 6 EEFYE-SLDKVLNELKTYTEHSTPFLTKVSKREAPDYY-DIIKKPMDLGTMLKKLK 59 (112)
T ss_pred HHHHH-HHHHHHHHHHhcCccccchhcCCChhhcCCHH-HHhcCccCHHHHHHHHh
Confidence 34664 455555565544456899999976 55 99999999999999985
No 4
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=44.89 E-value=40 Score=25.94 Aligned_cols=32 Identities=25% Similarity=0.536 Sum_probs=27.0
Q ss_pred HhCCCCCCCC--------CchhhhhhCChHHHHHHHHHHHH
Q 037248 103 QSMGLPFLRP--------ADYYAEMVKSDAHMEKVKCLLLS 135 (199)
Q Consensus 103 ~~~gIpf~RP--------~DYFAEMvKSD~HM~KVr~kLl~ 135 (199)
+..+.||..| +||| +.+|..--...|+.+|-.
T Consensus 20 ~~~s~~F~~PVd~~~~~~pdY~-~iIk~PmDL~tI~~kL~~ 59 (107)
T cd05497 20 HKFAWPFQQPVDAVKLNLPDYH-KIIKTPMDLGTIKKRLEN 59 (107)
T ss_pred CCcCccccCCCCcccccCCcHH-HHHcCcccHHHHHHHHcC
Confidence 5678899998 4666 999999999999999864
No 5
>PHA02585 16 small terminase protein; Provisional
Probab=43.18 E-value=82 Score=26.87 Aligned_cols=68 Identities=22% Similarity=0.435 Sum_probs=53.5
Q ss_pred CccCCCcchH---HHHHHHHHH-HHHHHHHHHHHHHhCCCCCCCCCchhhhhhCChHHHHHHHHHHHHHHHHHHHHH
Q 037248 72 EQEVDVNDDL---KREASFYTQ-ALEGTRQAFEKLQSMGLPFLRPADYYAEMVKSDAHMEKVKCLLLSEQKEIEEAE 144 (199)
Q Consensus 72 ~~~vDv~DDl---~RE~aFY~Q-Al~aV~~a~~~L~~~gIpf~RP~DYFAEMvKSD~HM~KVr~kLl~eq~~ie~sE 144 (199)
....|+.+|. -|.++|..| .+.||..|+..-+..+-| |-..-|+.+.+ +|.-+-.+|+.-|+.++.--
T Consensus 39 ~R~~Dle~DY~~vR~~~h~q~Qm~mda~~iaLE~AknSesP--R~~EVf~~Lm~---qm~~~nk~Ll~lhK~MK~it 110 (161)
T PHA02585 39 NRKPDLEDDYSLVRRNMHFQQQMLMDAAKIALENAKNSESP--RHVEVFATLMG---QMTNTNKEILKIHKEMKDIT 110 (161)
T ss_pred ccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCc--hHHHHHHHHHH---HHHhhHHHHHHHHHHHHHhh
Confidence 3456787775 567888666 358999999888888877 77888999986 78889999999998887643
No 6
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=40.66 E-value=35 Score=25.97 Aligned_cols=47 Identities=17% Similarity=0.385 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHh-----CCCCCCCCCc------hhhhhhCChHHHHHHHHHHHH
Q 037248 88 YTQALEGTRQAFEKLQS-----MGLPFLRPAD------YYAEMVKSDAHMEKVKCLLLS 135 (199)
Q Consensus 88 Y~QAl~aV~~a~~~L~~-----~gIpf~RP~D------YFAEMvKSD~HM~KVr~kLl~ 135 (199)
|.|=..+|..++..+.. +-.||.+|++ || +.|+..--+..|+.+|-.
T Consensus 2 ~~~~~~~i~~~v~~~~d~~g~~l~~~F~~~p~~~~~pdYy-~~I~~Pmdl~tI~~kl~~ 59 (104)
T cd05522 2 YEARIKNILKGLRKERDENGRLLTLHFEKLPDKAREPEYY-QEISNPISLDDIKKKVKR 59 (104)
T ss_pred HHHHHHHHHHHHHHHhCcCCCcccHHHhcCCCccccCcHH-HHhCCCcCHHHHHHHHcc
Confidence 45677889999998866 5567887774 66 899999999999998864
No 7
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=38.10 E-value=66 Score=25.39 Aligned_cols=50 Identities=22% Similarity=0.345 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCCCch-----hhhhhCChHHHHHHHHHHHH
Q 037248 84 EASFYTQALEGTRQAFEKLQSMGLPFLRPADY-----YAEMVKSDAHMEKVKCLLLS 135 (199)
Q Consensus 84 E~aFY~QAl~aV~~a~~~L~~~gIpf~RP~DY-----FAEMvKSD~HM~KVr~kLl~ 135 (199)
|-.+++++.. ++.++-. +..+.||..|.|. |.+.+|..--+..|+.+|-.
T Consensus 3 ~~~w~~~c~~-il~~l~~-~~~s~~F~~PVd~~~~pdY~~iIk~PmDL~tIk~kL~~ 57 (119)
T cd05496 3 ESDWKKQCKE-LVNLMWD-CEDSEPFRQPVDLLKYPDYRDIIDTPMDLGTVKETLFG 57 (119)
T ss_pred HHHHHHHHHH-HHHHHHh-CCccccccCCCChhhcCcHHHHhCCcccHHHHHHHHhC
Confidence 3345555443 3333322 4567899999862 34899999999999999854
No 8
>TIGR03665 arCOG04150 arCOG04150 universal archaeal KH domain protein. This family of proteins is universal among the 41 archaeal genomes analyzed in and is not observed outside of the archaea. The proteins contain a single KH domain (pfam00013) which is likely to confer the ability to bind RNA.
Probab=36.71 E-value=30 Score=28.68 Aligned_cols=44 Identities=25% Similarity=0.336 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhCCCCCC-------CCCchhhhh------hCChHHHHHHHHHHHHH
Q 037248 93 EGTRQAFEKLQSMGLPFL-------RPADYYAEM------VKSDAHMEKVKCLLLSE 136 (199)
Q Consensus 93 ~aV~~a~~~L~~~gIpf~-------RP~DYFAEM------vKSD~HM~KVr~kLl~e 136 (199)
.++..|...+...+-.|. =.++||.+. .++..||.+++.+|+-.
T Consensus 50 ~~i~kA~~~I~~i~~gf~~e~A~~l~gd~y~~~Vi~I~~~~~~~~~~~~~~griIG~ 106 (172)
T TIGR03665 50 LAVMKAREVVKAIGRGFSPEKALKLLDDDYMLEVIDLKEYGKSPNALRRIKGRIIGE 106 (172)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHhcCCcceEEEEEhhhccCCHHHHHHHHhhhcCC
Confidence 344444444444444333 137888887 78999999999999843
No 9
>PF02208 Sorb: Sorbin homologous domain; InterPro: IPR003127 Sorbin is an active peptide present in the digestive tract, where it has pro-absorptive and anti-secretory effects in different parts of the intestine, including the ability to decrease VIP (vasoactive intestinal peptide) and cholera toxin-induced secretion. It is expressed in some intestinal and pancreatic endocrine tumours in humans []. Sorbin-homology domains are found in adaptor proteins such as vinexin, CAP/ponsin and argBP2, which regulate various cellular functions, including cell adhesion, cytoskeletal organisation, and growth factor signalling []. In addition to the sorbin domain, these proteins contain three SH3 (src homology 3) domains. The sorbin homology domain mediates the interaction of vinexin and CAP with flotillin, which is crucial for the localisation of SH3-binding proteins to the lipid raft, a region of the plasma membrane rich in cholesterol and sphingolipids that acts to concentrate certain signalling molecules. The sorbin homology domain of adaptor proteins may mediate interactions with the lipid raft that are crucial to intracellular communication [].
Probab=32.33 E-value=19 Score=24.94 Aligned_cols=19 Identities=42% Similarity=0.870 Sum_probs=15.1
Q ss_pred hCCCCC---CCCCchhhhhhCC
Q 037248 104 SMGLPF---LRPADYYAEMVKS 122 (199)
Q Consensus 104 ~~gIpf---~RP~DYFAEMvKS 122 (199)
+.|||+ .||.|+|-.|+|.
T Consensus 14 e~giP~~~vd~~kDWYktMFkq 35 (47)
T PF02208_consen 14 ESGIPLSNVDRPKDWYKTMFKQ 35 (47)
T ss_pred cCCCccccccchhHHHHHHHHH
Confidence 456665 5899999999984
No 10
>PF02946 GTF2I: GTF2I-like repeat; InterPro: IPR004212 This region of sequence similarity is found up to six times in a variety of proteins including general transcription factor II-I (GTF2I). It has been suggested that this may be a DNA binding domain [, ].; PDB: 2E3L_A 2D99_A 2DN4_A 2D9B_A 2EJE_A 1Q60_A 2DZR_A 2DN5_A 2DZQ_A 2ED2_A.
Probab=32.18 E-value=20 Score=27.02 Aligned_cols=13 Identities=46% Similarity=0.984 Sum_probs=7.7
Q ss_pred CCCCCCCCCchhh
Q 037248 105 MGLPFLRPADYYA 117 (199)
Q Consensus 105 ~gIpf~RP~DYFA 117 (199)
.||+|.||+.|=.
T Consensus 44 egi~fr~P~~Y~i 56 (76)
T PF02946_consen 44 EGIPFRRPSNYGI 56 (76)
T ss_dssp TT--SS-TTTS-H
T ss_pred CCCcCCCCCcCCH
Confidence 5999999999954
No 11
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=30.99 E-value=65 Score=24.74 Aligned_cols=40 Identities=30% Similarity=0.571 Sum_probs=29.3
Q ss_pred HHHHHHHHH---hCCCCCCCC--------CchhhhhhCChHHHHHHHHHHHH
Q 037248 95 TRQAFEKLQ---SMGLPFLRP--------ADYYAEMVKSDAHMEKVKCLLLS 135 (199)
Q Consensus 95 V~~a~~~L~---~~gIpf~RP--------~DYFAEMvKSD~HM~KVr~kLl~ 135 (199)
....+..|. ....||..| +||| +.+|..--+..|+.+|-.
T Consensus 8 ~~~il~~l~~~~~~s~~F~~PV~~~~~~~pdY~-~iIk~PmDL~tI~~kL~~ 58 (108)
T cd05495 8 LMPTLEKLYKQDPESLPFRQPVDPKLLGIPDYF-DIVKNPMDLSTIRRKLDT 58 (108)
T ss_pred HHHHHHHHHHcCcccchhcCCCCccccCCCcHH-HHhCCCCCHHHHHHHHhc
Confidence 334444553 556788887 4677 899999999999999953
No 12
>PLN03086 PRLI-interacting factor K; Provisional
Probab=30.77 E-value=2.2e+02 Score=28.66 Aligned_cols=14 Identities=21% Similarity=0.178 Sum_probs=9.2
Q ss_pred HHHHHHHhhccccc
Q 037248 172 VVVMVEREKGRRIE 185 (199)
Q Consensus 172 ~~~~~~r~~g~~~~ 185 (199)
..+-+-|..|.+|.
T Consensus 64 ~~~~~~~~~~~g~~ 77 (567)
T PLN03086 64 QQMQESLQAGRGIV 77 (567)
T ss_pred HHHHHHHHcCCCeE
Confidence 35666677887664
No 13
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=30.67 E-value=86 Score=23.31 Aligned_cols=30 Identities=27% Similarity=0.563 Sum_probs=23.8
Q ss_pred CCCCCCCCC--------chhhhhhCChHHHHHHHHHHHH
Q 037248 105 MGLPFLRPA--------DYYAEMVKSDAHMEKVKCLLLS 135 (199)
Q Consensus 105 ~gIpf~RP~--------DYFAEMvKSD~HM~KVr~kLl~ 135 (199)
...||.+|. ||| ++++..--+..|+.+|-.
T Consensus 20 ~a~~F~~pv~~~~~~~p~Y~-~~I~~Pmdl~~I~~kl~~ 57 (102)
T cd05498 20 YAWPFYKPVDPEALGLHDYH-DIIKHPMDLSTIKKKLDN 57 (102)
T ss_pred ccCcccCcCCccccCCCcHH-HHccCCCcHHHHHHHHcc
Confidence 367899874 555 899999999999999863
No 14
>PF10932 DUF2783: Protein of unknown function (DUF2783); InterPro: IPR021233 This is a bacterial family of uncharacterised protein.
Probab=29.79 E-value=55 Score=23.72 Aligned_cols=27 Identities=22% Similarity=0.564 Sum_probs=19.7
Q ss_pred CCCCCCchhhhhhC-----ChHHHHHHHHHHH
Q 037248 108 PFLRPADYYAEMVK-----SDAHMEKVKCLLL 134 (199)
Q Consensus 108 pf~RP~DYFAEMvK-----SD~HM~KVr~kLl 134 (199)
.|.+|+|||+..+- ||+.=.-+-.+|+
T Consensus 6 nl~~pD~fY~~Li~aH~gLs~e~S~~lnArLi 37 (60)
T PF10932_consen 6 NLADPDDFYEALIEAHRGLSDEQSAALNARLI 37 (60)
T ss_pred CCCChhHHHHHHHHHHhCCCHHHHHHHhHHHH
Confidence 57899999998873 6666666666665
No 15
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=28.05 E-value=81 Score=23.58 Aligned_cols=31 Identities=23% Similarity=0.576 Sum_probs=24.8
Q ss_pred hCCCCCCCCC--------chhhhhhCChHHHHHHHHHHHH
Q 037248 104 SMGLPFLRPA--------DYYAEMVKSDAHMEKVKCLLLS 135 (199)
Q Consensus 104 ~~gIpf~RP~--------DYFAEMvKSD~HM~KVr~kLl~ 135 (199)
....||.+|. ||| ++|+..--+..|+.+|-.
T Consensus 19 ~~s~~F~~pvd~~~~~~pdY~-~~I~~P~dL~~I~~kl~~ 57 (102)
T cd05499 19 AYNWPFLDPVDPVALNIPNYF-SIIKKPMDLGTISKKLQN 57 (102)
T ss_pred cccchhcCCCCccccCCCCHH-HHhcCCCCHHHHHHHHcC
Confidence 3578999884 466 899999999999988864
No 16
>KOG4650 consensus Predicted steroid reductase [General function prediction only]
Probab=27.89 E-value=46 Score=30.75 Aligned_cols=34 Identities=21% Similarity=0.306 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHhCCCC--------CCCCCchhhhhh
Q 037248 87 FYTQALEGTRQAFEKLQSMGLP--------FLRPADYYAEMV 120 (199)
Q Consensus 87 FY~QAl~aV~~a~~~L~~~gIp--------f~RP~DYFAEMv 120 (199)
|-.|-+-.-.+|+..|.+.|-| ++|-+.||+||+
T Consensus 193 ~ADqQ~~~f~~~~~~l~~~Gk~~~d~GlwrySRHPNylgEqL 234 (311)
T KOG4650|consen 193 LADQQKLSFKEARYDLENLGKGWCDVGLWRYSRHPNYLGEQL 234 (311)
T ss_pred HhhhhhhhHHhhhcCHHHcCCccccccceeeccCccHHHHHH
Confidence 4456666678899999999985 589999999996
No 17
>KOG3654 consensus Uncharacterized CH domain protein [Cytoskeleton]
Probab=27.82 E-value=2e+02 Score=29.21 Aligned_cols=35 Identities=23% Similarity=0.460 Sum_probs=26.6
Q ss_pred hhhhhhCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037248 115 YYAEMVKSDAHMEKVKCLLLSEQKEIEEAEERKKA 149 (199)
Q Consensus 115 YFAEMvKSD~HM~KVr~kLl~eq~~ie~sE~aKk~ 149 (199)
||-.=-|-...|.+-|.-||..|.+..+-.++|||
T Consensus 378 ffkdeqkaedema~kraallekqqrraeear~rkq 412 (708)
T KOG3654|consen 378 FFKDEQKAEDEMAQKRAALLEKQQRRAEEARRRKQ 412 (708)
T ss_pred eeccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555677789999999999999887665555555
No 18
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=27.11 E-value=4.9e+02 Score=24.27 Aligned_cols=66 Identities=27% Similarity=0.473 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCchhhhhhCC--------------hHHHHHHHHHHHHHHHHHHHHHHH-----H
Q 037248 87 FYTQALEGTRQAFEKLQSMGLPFLRPADYYAEMVKS--------------DAHMEKVKCLLLSEQKEIEEAEER-----K 147 (199)
Q Consensus 87 FY~QAl~aV~~a~~~L~~~gIpf~RP~DYFAEMvKS--------------D~HM~KVr~kLl~eq~~ie~sE~a-----K 147 (199)
||+.-...+ ...|+.. ||.+||-.|+.+ ++-...+..++..-+..++..+.. +
T Consensus 199 F~~l~~~T~-------~R~~f~~-r~~~Yf~~l~~~f~d~a~~~~A~l~~~~~~~~l~~~~~~~~~~i~~l~~~l~~~~k 270 (406)
T PF02388_consen 199 FYDLYKETA-------ERKGFSI-RSLEYFENLYDAFGDKAKFFLAELNGKEYLESLQEKLEKLEKEIEKLEEKLEKNPK 270 (406)
T ss_dssp HHHHHHHHH-------HHTT------HHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH-TH
T ss_pred HHHHHHHHH-------hhCCCcc-cCHHHHHHHHHhcCCCeEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 666544442 3356665 899999998764 677788888888888888777776 5
Q ss_pred HHHHhhHHHHHHH
Q 037248 148 KAREAKKLAKEIQ 160 (199)
Q Consensus 148 k~Re~KKfgKqVQ 160 (199)
+.+..+.+-+|++
T Consensus 271 ~~~k~~~~~~q~~ 283 (406)
T PF02388_consen 271 KKNKLKELEEQLA 283 (406)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHH
Confidence 5555555444443
No 19
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=26.97 E-value=86 Score=23.68 Aligned_cols=31 Identities=13% Similarity=0.356 Sum_probs=25.5
Q ss_pred HhCCCCCCCCCc------hhhhhhCChHHHHHHHHHHH
Q 037248 103 QSMGLPFLRPAD------YYAEMVKSDAHMEKVKCLLL 134 (199)
Q Consensus 103 ~~~gIpf~RP~D------YFAEMvKSD~HM~KVr~kLl 134 (199)
+..+.||..|.| || +.+|..--+..|+.+|-
T Consensus 15 ~~~s~~F~~pv~~~~~pdY~-~iIk~PmDL~tI~~kl~ 51 (97)
T cd05505 15 YRFSWPFREPVTADEAEDYK-KVITNPMDLQTMQTKCS 51 (97)
T ss_pred CCCcccccCCCChhhcccHH-HHcCCcCCHHHHHHHHc
Confidence 356889999976 66 99999888899988874
No 20
>PRK15327 type III secretion system needle complex protein PrgH; Provisional
Probab=26.18 E-value=72 Score=30.52 Aligned_cols=96 Identities=14% Similarity=0.198 Sum_probs=61.0
Q ss_pred CCCCcccCHHHHHHHHHhcCCCCCCCcc--eeeeeccCCCccC------CCcc-----h----HHHHHHHHHH-------
Q 037248 35 PSKQAVYNRDGLEEKLQDIGWPENAGWI--HKLTIDIDQEQEV------DVND-----D----LKREASFYTQ------- 90 (199)
Q Consensus 35 ~~k~~InN~~~L~~kL~eI~~~~~lpWi--EtL~vt~~~~~~v------Dv~D-----D----l~RE~aFY~Q------- 90 (199)
..+..|-+...+...++.- +....||+ .+++++.+..+.+ +... . +.+.+-||++
T Consensus 219 ~~~v~v~~~~~~~~~ie~~-L~~~~P~l~~lkv~l~~P~~Pvl~ls~~r~~l~~~~~~~l~~~l~~~~pya~~v~I~~~s 297 (393)
T PRK15327 219 DKNARVINENEENKRVSTW-LDTYYPQLAYYRLHFDEPRKPVLWLSRQRNVLSKKELEVLSQKLRALMPYADSVNITLMD 297 (393)
T ss_pred cCceEEechHHHHHHHHHH-HHhcCCCceEEEEECCCCCCCEEEEEcccccCCHHHHHHHHHHHHHhCCccceeEEEEcC
Confidence 4466677788888877775 46789999 7888887654433 1112 2 3444455543
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCc-----hhhhhhCChHHHHHHHH
Q 037248 91 ALEGTRQAFEKLQSMGLPFLRPAD-----YYAEMVKSDAHMEKVKC 131 (199)
Q Consensus 91 Al~aV~~a~~~L~~~gIpf~RP~D-----YFAEMvKSD~HM~KVr~ 131 (199)
.-+.+.+|+.-|.+.+|||.|=+. |+--=.=||.++..++.
T Consensus 298 ~~~l~~~Ae~GL~~~nv~yr~i~~~~~vtFiI~~sL~D~~l~~l~~ 343 (393)
T PRK15327 298 DVTAAGQAEAGLKQQALPYSRRDHKGSVTFVIQGALDDGEIQRARQ 343 (393)
T ss_pred HHHHHHHHHhhHHhcCCceEEEecCCcEEEEEcCCCCHHHHHHHHH
Confidence 345677888889999999987432 23333346777766654
No 21
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=25.32 E-value=1.4e+02 Score=23.24 Aligned_cols=46 Identities=24% Similarity=0.335 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHhC--CCCCCCCCc------hhhhhhCChHHHHHHHHHHHH
Q 037248 89 TQALEGTRQAFEKLQSM--GLPFLRPAD------YYAEMVKSDAHMEKVKCLLLS 135 (199)
Q Consensus 89 ~QAl~aV~~a~~~L~~~--gIpf~RP~D------YFAEMvKSD~HM~KVr~kLl~ 135 (199)
+|........+.+|.+. ..||.+|.| || +.++..--+.-|+.||-.
T Consensus 2 ~~lr~~L~~il~~l~~~~~~~~F~~pv~~~~~pdY~-~vI~~PmdL~tI~~kl~~ 55 (112)
T cd05528 2 RELRLFLRDVLKRLASDKRFNAFTKPVDEEEVPDYY-EIIKQPMDLQTILQKLDT 55 (112)
T ss_pred hHHHHHHHHHHHHHHhCCCchhhcCCCCccccCcHH-HHHcCCCCHHHHHHHHcC
Confidence 34444556666777654 689999986 66 899988888888888754
No 22
>TIGR00598 rad14 DNA repair protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=25.25 E-value=1.6e+02 Score=25.35 Aligned_cols=31 Identities=32% Similarity=0.421 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhhH
Q 037248 138 KEIEEAEERKKAREAKKLAKEIQEIGLVGRQ 168 (199)
Q Consensus 138 ~~ie~sE~aKk~Re~KKfgKqVQ~ek~~eR~ 168 (199)
...+.+++.|++|.+|||.|++.-=+.+-|.
T Consensus 98 ~E~e~Re~~k~~~kekkf~kklkelR~~~R~ 128 (172)
T TIGR00598 98 EEKERREESKEEMKEKKFEKKLKELRRAVRS 128 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888889999999987754444443
No 23
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=25.09 E-value=2.2e+02 Score=24.55 Aligned_cols=22 Identities=23% Similarity=0.318 Sum_probs=15.3
Q ss_pred HHHhCCC------CCCCCCchhhhhhCC
Q 037248 101 KLQSMGL------PFLRPADYYAEMVKS 122 (199)
Q Consensus 101 ~L~~~gI------pf~RP~DYFAEMvKS 122 (199)
+++++-| .-+-++|||-|=+.|
T Consensus 124 rIkknRvDps~qS~sNPvPDYYGEKI~S 151 (173)
T PF08566_consen 124 RIKKNRVDPSSQSFSNPVPDYYGEKIGS 151 (173)
T ss_pred HHHHcCCCccccccCCCCCchhhhhhcc
Confidence 4666665 244568999998877
No 24
>PF10454 DUF2458: Protein of unknown function (DUF2458); InterPro: IPR018858 This entry represents a family of uncharacterised proteins.
Probab=23.20 E-value=2.5e+02 Score=23.24 Aligned_cols=54 Identities=17% Similarity=0.317 Sum_probs=32.0
Q ss_pred CcchHHHHHHH-----HHHHHHHHHHHHHHHHhCCCCCCCCCchhhhhhCChHHHHHHHHHHHH
Q 037248 77 VNDDLKREASF-----YTQALEGTRQAFEKLQSMGLPFLRPADYYAEMVKSDAHMEKVKCLLLS 135 (199)
Q Consensus 77 v~DDl~RE~aF-----Y~QAl~aV~~a~~~L~~~gIpf~RP~DYFAEMvKSD~HM~KVr~kLl~ 135 (199)
...+.+.|+.= |+....-+..-...|..+||||+==+- --|+.-+...+.++|.
T Consensus 84 ~~~e~~~EL~~fD~kV~~a~~~m~~~~~~~L~~LgVPfF~~~~-----~~~~~el~~~q~rmL~ 142 (150)
T PF10454_consen 84 PEKEDEAELDKFDEKVYKASKQMSKEQQAELKELGVPFFYIKE-----DISDEELRELQKRMLQ 142 (150)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeeCCC-----CCCcHHHHHHHHHHHH
Confidence 34566777543 333444455556789999999964333 3345555555666554
No 25
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=21.65 E-value=78 Score=26.19 Aligned_cols=26 Identities=27% Similarity=0.591 Sum_probs=20.0
Q ss_pred HHHHHHHHHhCCCCCC-CCCchhhhhh
Q 037248 95 TRQAFEKLQSMGLPFL-RPADYYAEMV 120 (199)
Q Consensus 95 V~~a~~~L~~~gIpf~-RP~DYFAEMv 120 (199)
+-.++..|++.|++|. -|..||-++-
T Consensus 94 I~~~~~~L~~~Gv~~l~~P~~yy~~l~ 120 (191)
T cd07250 94 IFATVAALRARGVEFLPIPDNYYDDLE 120 (191)
T ss_pred HHHHHHHHHHcCCeeccCchhhHHHHH
Confidence 5567778999999995 6777877654
No 26
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=21.25 E-value=1.2e+02 Score=22.99 Aligned_cols=44 Identities=30% Similarity=0.451 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHhC-----CCCCCCCC------chhhhhhCChHHHHHHHHHHH
Q 037248 90 QALEGTRQAFEKLQSM-----GLPFLRPA------DYYAEMVKSDAHMEKVKCLLL 134 (199)
Q Consensus 90 QAl~aV~~a~~~L~~~-----gIpf~RP~------DYFAEMvKSD~HM~KVr~kLl 134 (199)
|....+..++..+... -.||.+|+ ||| +.++..--+..|+.+|-
T Consensus 3 ~~~~~~~~~i~~~~d~~~~~~a~~F~~~p~~~~~pdYy-~iIk~PmdL~tI~~kl~ 57 (105)
T cd05515 3 QKLWELYNAVKNYTDGRGRRLSLIFMRLPSKSEYPDYY-DVIKKPIDMEKIRSKIE 57 (105)
T ss_pred HHHHHHHHHHHHhhCcCCCcccHHhccCCCcccCCcHH-HHcCCCcCHHHHHHHHc
Confidence 3444455555555433 35788874 677 89999999999999885
No 27
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=21.13 E-value=1.6e+02 Score=29.13 Aligned_cols=76 Identities=18% Similarity=0.194 Sum_probs=53.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--------CCCCchhhhhhCChHH--H-HHHHHHHHHHHHHHHHHHHH
Q 037248 78 NDDLKREASFYTQALEGTRQAFEKLQSMGLPF--------LRPADYYAEMVKSDAH--M-EKVKCLLLSEQKEIEEAEER 146 (199)
Q Consensus 78 ~DDl~RE~aFY~QAl~aV~~a~~~L~~~gIpf--------~RP~DYFAEMvKSD~H--M-~KVr~kLl~eq~~ie~sE~a 146 (199)
+|--.|=++=...-..++++|++.|...-... ..+++=|-+|.+++++ | .-|+++|....+..
T Consensus 108 hDAAcrViaRL~kE~~eareaLa~~~~qa~a~~peav~~~~~~s~~~va~ge~~d~~g~s~~i~~~l~~~aq~l------ 181 (506)
T KOG0289|consen 108 HDAACRVIARLTKERDEAREALAKLSPQAGAIVPEAVPSLAQSSVVGVAAGESEDQPGLSPEIIQKLEDKAQVL------ 181 (506)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCcccccccccccccccccchhhhhcCCccccccCCHHHHHHHHHHHHHH------
Confidence 45556767777777888899999986543333 5678889999999999 5 45677776655543
Q ss_pred HHHHHhhHHHHHHHH
Q 037248 147 KKAREAKKLAKEIQE 161 (199)
Q Consensus 147 Kk~Re~KKfgKqVQ~ 161 (199)
-++.||+||+++.
T Consensus 182 --s~~rKkrg~k~p~ 194 (506)
T KOG0289|consen 182 --SQERKKRGKKLPE 194 (506)
T ss_pred --HHHhhhccccCCc
Confidence 2445688888874
No 28
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=20.83 E-value=1.3e+02 Score=22.10 Aligned_cols=32 Identities=28% Similarity=0.509 Sum_probs=25.3
Q ss_pred HhCCCCCCCCC--------chhhhhhCChHHHHHHHHHHHH
Q 037248 103 QSMGLPFLRPA--------DYYAEMVKSDAHMEKVKCLLLS 135 (199)
Q Consensus 103 ~~~gIpf~RP~--------DYFAEMvKSD~HM~KVr~kLl~ 135 (199)
+..+.||..|. ||| ++++..-...-|+.+|-.
T Consensus 15 ~~~~~~F~~pv~~~~~~~p~Y~-~~I~~P~dl~tI~~kL~~ 54 (99)
T cd05506 15 HKWGWVFNAPVDVVALGLPDYF-DIIKKPMDLGTVKKKLEK 54 (99)
T ss_pred CCCCccccCCCCccccCCCCHH-HHHcCCCCHHHHHHHHhc
Confidence 35578998874 355 999999999999999853
No 29
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=20.09 E-value=1.6e+02 Score=22.32 Aligned_cols=31 Identities=16% Similarity=0.180 Sum_probs=24.2
Q ss_pred HhCCCCCCCC------CchhhhhhCChHHHHHHHHHHH
Q 037248 103 QSMGLPFLRP------ADYYAEMVKSDAHMEKVKCLLL 134 (199)
Q Consensus 103 ~~~gIpf~RP------~DYFAEMvKSD~HM~KVr~kLl 134 (199)
+..+.+|..| +||| +.+|..--+..|+.+|-
T Consensus 16 ~~~~~~F~~PV~~~~~pdY~-~vIk~PmDL~tI~~kl~ 52 (98)
T cd05513 16 KDPHGFFAFPVTDFIAPGYS-SIIKHPMDFSTMKEKIK 52 (98)
T ss_pred CCccccccCcCCccccccHH-HHHcCccCHHHHHHHHh
Confidence 3557788887 3666 89999888899998884
Done!