Query 037248
Match_columns 199
No_of_seqs 112 out of 220
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 17:28:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037248.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037248hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2d9b_A Gtfii-I, general transc 26.1 22 0.00075 27.4 1.1 12 105-116 61-72 (109)
2 2d99_A Muscle, general transcr 20.1 34 0.0012 25.5 1.0 13 105-117 51-63 (90)
3 2i7k_A Bromodomain-containing 19.6 77 0.0026 23.5 3.0 44 90-135 11-60 (117)
4 3p1f_A CREB-binding protein; s 17.8 65 0.0022 23.6 2.2 46 90-135 14-66 (119)
5 2dat_A Possible global transcr 17.8 52 0.0018 24.4 1.7 29 105-134 36-70 (123)
6 2dzr_A General transcription f 17.3 37 0.0013 25.7 0.7 11 105-115 51-61 (99)
7 2y0m_B MALE-specific lethal 1 16.3 1.6E+02 0.0053 21.1 3.8 63 97-167 9-73 (74)
8 2y9j_Y Lipoprotein PRGK, prote 16.1 2.5E+02 0.0087 22.2 5.5 39 97-135 47-89 (170)
9 4hpq_A ATG31, KLTH0C07942P; au 15.8 48 0.0016 23.6 0.9 10 106-115 11-20 (69)
10 2d9e_A Peregrin; four-helix bu 15.7 1.8E+02 0.0061 21.4 4.2 32 103-135 22-59 (121)
No 1
>2d9b_A Gtfii-I, general transcription factor II-I, TFII-I; structural genomics, unknown function, NPPSFA; NMR {Homo sapiens} PDB: 2e3l_A
Probab=26.06 E-value=22 Score=27.41 Aligned_cols=12 Identities=33% Similarity=0.750 Sum_probs=10.4
Q ss_pred CCCCCCCCCchh
Q 037248 105 MGLPFLRPADYY 116 (199)
Q Consensus 105 ~gIpf~RP~DYF 116 (199)
.||+|.||..|=
T Consensus 61 egi~fR~P~~Yg 72 (109)
T 2d9b_A 61 EGVAFKHPENYD 72 (109)
T ss_dssp TTCCSCCTTSSC
T ss_pred CCCccCCccccC
Confidence 589999999994
No 2
>2d99_A Muscle, general transcription factor II-I repeat domain- containing protein 1; structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.07 E-value=34 Score=25.51 Aligned_cols=13 Identities=54% Similarity=0.933 Sum_probs=10.7
Q ss_pred CCCCCCCCCchhh
Q 037248 105 MGLPFLRPADYYA 117 (199)
Q Consensus 105 ~gIpf~RP~DYFA 117 (199)
.||+|.||..|=+
T Consensus 51 eGi~fr~P~~yg~ 63 (90)
T 2d99_A 51 EGLAFRRPAEYDP 63 (90)
T ss_dssp SSCCSCCTTTSCH
T ss_pred CCCccCCccccCH
Confidence 5899999999843
No 3
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=19.64 E-value=77 Score=23.46 Aligned_cols=44 Identities=16% Similarity=0.218 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCC------CchhhhhhCChHHHHHHHHHHHH
Q 037248 90 QALEGTRQAFEKLQSMGLPFLRP------ADYYAEMVKSDAHMEKVKCLLLS 135 (199)
Q Consensus 90 QAl~aV~~a~~~L~~~gIpf~RP------~DYFAEMvKSD~HM~KVr~kLl~ 135 (199)
..+..+...+... ...-||..| +||| +.+|..--+..|+.||-.
T Consensus 11 ~~l~~il~~L~~~-~~~~~F~~PVd~~~~pdY~-~iIk~PMDL~tI~~kl~~ 60 (117)
T 2i7k_A 11 EALNQLMRQLQRK-DPSAFFSFPVTDFIAPGYS-MIIKHPMDFSTMKEKIKN 60 (117)
T ss_dssp HHHHHHHHHHHTS-SGGGTSSSCCCTTTSSSHH-HHCSCCCCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhC-cccHHhcCCCCccccCCHH-HHhCCCCCHHHHHHHHHc
Confidence 4444444443332 345678888 4666 889999899999999853
No 4
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=17.82 E-value=65 Score=23.56 Aligned_cols=46 Identities=33% Similarity=0.443 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCch-------hhhhhCChHHHHHHHHHHHH
Q 037248 90 QALEGTRQAFEKLQSMGLPFLRPADY-------YAEMVKSDAHMEKVKCLLLS 135 (199)
Q Consensus 90 QAl~aV~~a~~~L~~~gIpf~RP~DY-------FAEMvKSD~HM~KVr~kLl~ 135 (199)
+++..+...+-.....+.||..|.|- |.+.+|..--+..|+.||-.
T Consensus 14 ~~l~~~l~~l~~~~~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~~ 66 (119)
T 3p1f_A 14 QALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDT 66 (119)
T ss_dssp HHHHHHHHHHHTCTTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCchhcCCCCchhccCCCHHHHhcCCCCHHHHHHHHhc
Confidence 44555555544445578999998772 55788988888999998853
No 5
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=17.78 E-value=52 Score=24.40 Aligned_cols=29 Identities=21% Similarity=0.529 Sum_probs=23.5
Q ss_pred CCCCCCCCC------chhhhhhCChHHHHHHHHHHH
Q 037248 105 MGLPFLRPA------DYYAEMVKSDAHMEKVKCLLL 134 (199)
Q Consensus 105 ~gIpf~RP~------DYFAEMvKSD~HM~KVr~kLl 134 (199)
...||..|. ||| +.+|..--+..|+.||-
T Consensus 36 ~s~~F~~pv~~~~~pdY~-~iIk~PmdL~tI~~kl~ 70 (123)
T 2dat_A 36 LSEVFIQLPSRKELPEYY-ELIRKPVDFKKIKERIR 70 (123)
T ss_dssp SGGGGTSCCCTTTSCHHH-HHCSSCCCHHHHHHHHT
T ss_pred eeHHhcCCCCcccCCCHH-HHcCCCCCHHHHHHHHh
Confidence 456899885 565 89999999999999984
No 6
>2dzr_A General transcription factor II-I repeat domain- containing protein 1; RSGI RUH-067, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=17.29 E-value=37 Score=25.75 Aligned_cols=11 Identities=36% Similarity=1.068 Sum_probs=9.6
Q ss_pred CCCCCCCCCch
Q 037248 105 MGLPFLRPADY 115 (199)
Q Consensus 105 ~gIpf~RP~DY 115 (199)
.||||.+|.-|
T Consensus 51 egIpFr~P~~y 61 (99)
T 2dzr_A 51 PGIPFRKPCTF 61 (99)
T ss_dssp TTCCSSCGGGS
T ss_pred CCCcccCCCcc
Confidence 48999999988
No 7
>2y0m_B MALE-specific lethal 1 homolog; transcription, chromatin, X chromosome, MSL complex; HET: ALY ACO; 2.70A {Mus musculus}
Probab=16.31 E-value=1.6e+02 Score=21.12 Aligned_cols=63 Identities=17% Similarity=0.180 Sum_probs=26.9
Q ss_pred HHHHHHHhCCCCCCCCCchhh--hhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Q 037248 97 QAFEKLQSMGLPFLRPADYYA--EMVKSDAHMEKVKCLLLSEQKEIEEAEERKKAREAKKLAKEIQEIGLVGR 167 (199)
Q Consensus 97 ~a~~~L~~~gIpf~RP~DYFA--EMvKSD~HM~KVr~kLl~eq~~ie~sE~aKk~Re~KKfgKqVQ~ek~~eR 167 (199)
..++......++...+++..- |-+ ||+-- +..+..-+.-|.+|+..+...+-.|...+++++|
T Consensus 9 i~iP~WR~~~l~pl~~~~~~~~~E~L-sD~~F-------~kRH~K~E~dEkrRkRwd~qrirEq~~~e~Lr~R 73 (74)
T 2y0m_B 9 LAVPSWRDHSVEPLRDPNPSDILENL-DDSVF-------SKRHAKLELDEKRRKRWDIQRIREQRILQRLQLR 73 (74)
T ss_dssp --------------------CCCCCC-CHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred eeCCCccccCCCcCCccccccCcccC-CHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555555555555443332 332 45433 3345556677888888888888888888887765
No 8
>2y9j_Y Lipoprotein PRGK, protein PRGK; protein transport, type III secretion, IR1, inner membrane R C24-fold; 6.40A {Salmonella enterica subsp}
Probab=16.10 E-value=2.5e+02 Score=22.17 Aligned_cols=39 Identities=15% Similarity=0.130 Sum_probs=26.0
Q ss_pred HHHHHHHhCCCCCCCCCch---hhhh-hCChHHHHHHHHHHHH
Q 037248 97 QAFEKLQSMGLPFLRPADY---YAEM-VKSDAHMEKVKCLLLS 135 (199)
Q Consensus 97 ~a~~~L~~~gIpf~RP~DY---FAEM-vKSD~HM~KVr~kLl~ 135 (199)
.|+-.|...|+|-..+..| |-.+ +=+=+.|+++|-...-
T Consensus 47 ~ar~~La~~GLP~~~~~g~~elf~~~~~g~T~~~e~~~~~ral 89 (170)
T 2y9j_Y 47 AAVYWIKTYQLPPRPRVEIAQMFPADSLVSSPRAEKARLYSAI 89 (170)
T ss_dssp HHHHHHHHTTCSCCCCCCTTCCTTTCSCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCCCHHHHhCCCCCCCCHHHHHHHHHHHH
Confidence 4677799999998777666 5532 3344677877755433
No 9
>4hpq_A ATG31, KLTH0C07942P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=15.80 E-value=48 Score=23.62 Aligned_cols=10 Identities=0% Similarity=-0.094 Sum_probs=7.8
Q ss_pred CCCCCCCCch
Q 037248 106 GLPFLRPADY 115 (199)
Q Consensus 106 gIpf~RP~DY 115 (199)
.+||.||.||
T Consensus 11 RlPg~Rp~gF 20 (69)
T 4hpq_A 11 RVAGRARNGF 20 (69)
T ss_dssp ECSSCCCSCC
T ss_pred EecCCCCCCC
Confidence 3789999875
No 10
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=15.66 E-value=1.8e+02 Score=21.42 Aligned_cols=32 Identities=25% Similarity=0.358 Sum_probs=25.4
Q ss_pred HhCCCCCCCCC------chhhhhhCChHHHHHHHHHHHH
Q 037248 103 QSMGLPFLRPA------DYYAEMVKSDAHMEKVKCLLLS 135 (199)
Q Consensus 103 ~~~gIpf~RP~------DYFAEMvKSD~HM~KVr~kLl~ 135 (199)
+...-||..|. ||| +.+|..--+..|+.||-.
T Consensus 22 ~~~~~~F~~pv~~~~~pdY~-~iIk~PmdL~tI~~kl~~ 59 (121)
T 2d9e_A 22 KDTGNIFSEPVPLSEVPDYL-DHIKKPMDFFTMKQNLEA 59 (121)
T ss_dssp HCSSCSSSSCCCTTTCTTHH-HHCSSCCCHHHHHHHHHT
T ss_pred CCccHhhCCcCCccccCCHH-HHcCCCcCHHHHHHHHhc
Confidence 45678999984 455 689998889999999853
Done!