Query 037248
Match_columns 199
No_of_seqs 112 out of 220
Neff 4.1
Searched_HMMs 13730
Date Mon Mar 25 17:29:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037248.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/037248hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1cjxa2 d.32.1.3 (A:154-356) 4 50.6 4 0.00029 31.4 2.5 27 95-121 95-122 (203)
2 d1wdka2 a.100.1.3 (A:621-715) 39.5 5.8 0.00042 27.1 1.6 32 91-123 59-90 (95)
3 d3dwya1 a.29.2.1 (A:1084-1197) 31.5 11 0.00083 25.9 2.1 46 90-135 9-61 (114)
4 d1q60a_ d.288.1.1 (A:) General 28.6 8.7 0.00064 27.3 1.1 11 105-115 51-61 (99)
5 d1sqia2 d.32.1.3 (A:157-366) 4 22.5 19 0.0014 27.7 2.1 22 95-116 118-140 (210)
6 d7reqb1 c.1.19.1 (B:16-475) Me 17.2 36 0.0026 28.8 2.9 38 81-121 233-281 (460)
7 d1wvia_ c.108.1.14 (A:) Putati 15.4 27 0.002 25.8 1.4 29 93-121 21-56 (253)
8 d2hs5a1 a.4.5.6 (A:25-93) Puta 13.7 18 0.0013 22.8 -0.1 27 87-113 34-60 (69)
9 d1twua_ d.32.1.8 (A:) Hypothet 12.5 69 0.005 21.0 2.9 26 92-117 86-111 (137)
10 d1e6ia_ a.29.2.1 (A:) GCN5 {Ba 12.2 63 0.0046 21.7 2.6 43 91-134 7-54 (111)
No 1
>d1cjxa2 d.32.1.3 (A:154-356) 4-hydroxyphenylpyruvate dioxygenase, HppD {Pseudomonas fluorescens [TaxId: 294]}
Probab=50.56 E-value=4 Score=31.36 Aligned_cols=27 Identities=26% Similarity=0.628 Sum_probs=21.0
Q ss_pred HHHHHHHHHhCCCCCCCC-CchhhhhhC
Q 037248 95 TRQAFEKLQSMGLPFLRP-ADYYAEMVK 121 (199)
Q Consensus 95 V~~a~~~L~~~gIpf~RP-~DYFAEMvK 121 (199)
+..++..|++.||+|..| ++||-++++
T Consensus 95 I~aav~~L~~~Gv~fL~~pp~~Yy~~l~ 122 (203)
T d1cjxa2 95 LVKTWDALKKIGMRFMTAPPDTYYEMLE 122 (203)
T ss_dssp HHHHHHHHHHTTCCBCCCCCHHHHHTHH
T ss_pred HHHHHHHHHhcCCccccCchhhHHHHHH
Confidence 345678899999999875 578877764
No 2
>d1wdka2 a.100.1.3 (A:621-715) Fatty oxidation complex alpha subunit, C-terminal domain {Pseudomonas fragi [TaxId: 296]}
Probab=39.47 E-value=5.8 Score=27.07 Aligned_cols=32 Identities=16% Similarity=0.288 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCchhhhhhCCh
Q 037248 91 ALEGTRQAFEKLQSMGLPFLRPADYYAEMVKSD 123 (199)
Q Consensus 91 Al~aV~~a~~~L~~~gIpf~RP~DYFAEMvKSD 123 (199)
.+..+...+..|.+.| +..+|++...+|+|+-
T Consensus 59 G~~~~~~~~~~l~~~g-~r~~p~~~L~~~~~~g 90 (95)
T d1wdka2 59 GVAEFVALADQYAELG-ALYHPTAKLREMAKNG 90 (95)
T ss_dssp CHHHHHHHHHHTGGGC-GGGCCCHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHhhC-CCCCCCHHHHHHHHhC
Confidence 4445555566778888 8899999999999763
No 3
>d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.54 E-value=11 Score=25.93 Aligned_cols=46 Identities=33% Similarity=0.445 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCc-------hhhhhhCChHHHHHHHHHHHH
Q 037248 90 QALEGTRQAFEKLQSMGLPFLRPAD-------YYAEMVKSDAHMEKVKCLLLS 135 (199)
Q Consensus 90 QAl~aV~~a~~~L~~~gIpf~RP~D-------YFAEMvKSD~HM~KVr~kLl~ 135 (199)
+++..+...+-.-.....||..|-| =|.++||..--+..|+.+|..
T Consensus 9 ~~l~~~l~~l~~~~p~a~pF~~pvd~~~~~~pdY~~iI~~PmdL~tI~~kl~~ 61 (114)
T d3dwya1 9 QALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDT 61 (114)
T ss_dssp HHHHHHHHHHHTCTTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCcCCCccCCCCChhhccCCCHHHHcCCCCCHHHHHHHHHc
Confidence 5555544443322346789999954 156889998889999999864
No 4
>d1q60a_ d.288.1.1 (A:) General transcription factor II-I {Mouse (Mus musculus) [TaxId: 10090]}
Probab=28.56 E-value=8.7 Score=27.32 Aligned_cols=11 Identities=45% Similarity=1.129 Sum_probs=9.8
Q ss_pred CCCCCCCCCch
Q 037248 105 MGLPFLRPADY 115 (199)
Q Consensus 105 ~gIpf~RP~DY 115 (199)
.||||.||.-|
T Consensus 51 egI~Fr~P~~y 61 (99)
T d1q60a_ 51 EGVPFRRPSTF 61 (99)
T ss_dssp TTCCSCCTTTS
T ss_pred CCCcCCCCCcc
Confidence 48999999988
No 5
>d1sqia2 d.32.1.3 (A:157-366) 4-hydroxyphenylpyruvate dioxygenase, HppD {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.51 E-value=19 Score=27.69 Aligned_cols=22 Identities=27% Similarity=0.569 Sum_probs=18.1
Q ss_pred HHHHHHHHHhCCCCCCCCCc-hh
Q 037248 95 TRQAFEKLQSMGLPFLRPAD-YY 116 (199)
Q Consensus 95 V~~a~~~L~~~gIpf~RP~D-YF 116 (199)
+..|...|++.||.|..|++ ||
T Consensus 118 I~~av~~L~~~Gv~fL~~P~~YY 140 (210)
T d1sqia2 118 IITTIRHLRERGMEFLAVPSSYY 140 (210)
T ss_dssp HHHHHHHHHHHTCCBCCCCHHHH
T ss_pred HHHHHHHHHHcCCCCCCCCcchh
Confidence 45567779999999999888 77
No 6
>d7reqb1 c.1.19.1 (B:16-475) Methylmalonyl-CoA mutase beta subunit, domain 1 {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}
Probab=17.21 E-value=36 Score=28.84 Aligned_cols=38 Identities=16% Similarity=0.212 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCC-----------CCCCCchhhhhhC
Q 037248 81 LKREASFYTQALEGTRQAFEKLQSMGLP-----------FLRPADYYAEMVK 121 (199)
Q Consensus 81 l~RE~aFY~QAl~aV~~a~~~L~~~gIp-----------f~RP~DYFAEMvK 121 (199)
..-|++| +++++.+-+..|.+.|++ |.=..|||-|+.|
T Consensus 233 ~~qELA~---~LA~~~~yl~~~~~~g~~~~~~~~~i~f~~s~g~~~F~eIAK 281 (460)
T d7reqb1 233 DVAELAW---ALATGAEYVRALVEQGFTATEAFDTINFRVTATHDQFLTIAR 281 (460)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHTTCCHHHHHTTEEEEEEECSCHHHHHHH
T ss_pred HHHHHHH---HHHHHHHHHHHHHHcCCCHHHHhcceEEEEecCCcHHHHHHH
Confidence 3568887 788888888888888887 5567899988764
No 7
>d1wvia_ c.108.1.14 (A:) Putative phosphatase SMU.1415c {Streptococcus mutans [TaxId: 1309]}
Probab=15.41 E-value=27 Score=25.81 Aligned_cols=29 Identities=24% Similarity=0.428 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhCCCCC-------CCCCchhhhhhC
Q 037248 93 EGTRQAFEKLQSMGLPF-------LRPADYYAEMVK 121 (199)
Q Consensus 93 ~aV~~a~~~L~~~gIpf-------~RP~DYFAEMvK 121 (199)
..|.+++..|++.|+|| .||.+.++++++
T Consensus 21 ~~a~e~l~~l~~~g~~~~~~TN~s~~~~~~~~~~l~ 56 (253)
T d1wvia_ 21 PAGEDFVKRLQERQLPYILVTNNTTRTPEMVQEMLA 56 (253)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCCSSCHHHHHHHHH
T ss_pred ccHHHHHHHHHHCCCCEEEEeCCCCCCHHHHHHHHH
Confidence 34566777899999996 688888887664
No 8
>d2hs5a1 a.4.5.6 (A:25-93) Putative transcriptional regulator RHA1_ro03477 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=13.66 E-value=18 Score=22.81 Aligned_cols=27 Identities=19% Similarity=0.057 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCC
Q 037248 87 FYTQALEGTRQAFEKLQSMGLPFLRPA 113 (199)
Q Consensus 87 FY~QAl~aV~~a~~~L~~~gIpf~RP~ 113 (199)
-|.-+...|.+|+.+|...|+-..+|.
T Consensus 34 ~~~vSr~tvr~Al~~L~~~Gli~~~~~ 60 (69)
T d2hs5a1 34 ALDVSRNTVREAFQILIEDRLVAHELN 60 (69)
T ss_dssp HHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHCCCHHHHHHHHHHHHHCCcEEEEcC
Confidence 466788899999999999999888775
No 9
>d1twua_ d.32.1.8 (A:) Hypothetical protein YycE {Bacillus subtilis [TaxId: 1423]}
Probab=12.47 E-value=69 Score=21.02 Aligned_cols=26 Identities=19% Similarity=0.161 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHhCCCCCCCCCchhh
Q 037248 92 LEGTRQAFEKLQSMGLPFLRPADYYA 117 (199)
Q Consensus 92 l~aV~~a~~~L~~~gIpf~RP~DYFA 117 (199)
.+.+..++.+|.+.|+++.+|.+-+.
T Consensus 86 ~~dv~~~~~~l~~~G~~~~~~~~~~~ 111 (137)
T d1twua_ 86 AVELAAITSKLKHMGYQEVESENPYW 111 (137)
T ss_dssp HHHHHHHHHHHHHTTCCEECCSSHHH
T ss_pred HHHHHHHHHHHHHCCCeEeCCCCCCC
Confidence 45566778889999999999887443
No 10
>d1e6ia_ a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=12.24 E-value=63 Score=21.69 Aligned_cols=43 Identities=19% Similarity=0.455 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCc---h--hhhhhCChHHHHHHHHHHH
Q 037248 91 ALEGTRQAFEKLQSMGLPFLRPAD---Y--YAEMVKSDAHMEKVKCLLL 134 (199)
Q Consensus 91 Al~aV~~a~~~L~~~gIpf~RP~D---Y--FAEMvKSD~HM~KVr~kLl 134 (199)
.+..++..+.. +....||.+|.| | |-+.|+..--+..|+.+|-
T Consensus 7 ~l~~il~~l~~-~~~a~pF~~pvd~~~~pdY~~vI~~PmdL~tI~~kl~ 54 (111)
T d1e6ia_ 7 AIQNILTELQN-HAAAWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLE 54 (111)
T ss_dssp HHHHHHHHHHH-STTCGGGSSCCCTTTSTTHHHHCSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCChhhcCCCCchhCcCHHHHcCCchhHHHHHHHHH
Confidence 34444444433 466779999886 3 7788999888999999985
Done!