BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037249
(420 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 126/481 (26%), Positives = 188/481 (39%), Gaps = 79/481 (16%)
Query: 1 MLVGKVNPSLLDLNHLSYLGLSFNDFQGVQIPRFI-GSIRNLRYLNLSDTQFVGMIPP-- 57
VG + P L L L YL L+ N F G +IP F+ G+ L L+LS F G +PP
Sbjct: 258 QFVGPIPP--LPLKSLQYLSLAENKFTG-EIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 314
Query: 58 --PXXXXXXXXXXXXXXXXXYVENFLWLSGLSFLE----------------------QLD 93
++ L + GL L+ LD
Sbjct: 315 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 374
Query: 94 LCYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSL 153
L N S L N +L EL L N P T+SN S L L LSF+
Sbjct: 375 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS--- 431
Query: 154 IPGWGPIPSWLYRLTHFEQLSV--ADRPRRIPRSMASLCNLRTIYL-------------S 198
G IPS L L+ L + IP+ + + L T+ L S
Sbjct: 432 ----GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 487
Query: 199 GCVSKELEILVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHL 258
C + L + L ++ ++G + + IG +NL L L NNS G +P L + L L L
Sbjct: 488 NCTN--LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 545
Query: 259 PDNKLNGTLFEIHFVNLTKLSVSSVN-------ENNLTLKVNHDW--VPPFQLVQLGLRS 309
N NGT+ F K++ + + +N+ K H + FQ G+RS
Sbjct: 546 NTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQ----GIRS 601
Query: 310 FYLDLFNNSFSGSISHFCYQ-----------NLMLLTLSNNKFTGNLPNSLGSLTSLVSL 358
L+ + +I+ Y ++M L +S N +G +P +GS+ L L
Sbjct: 602 EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFIL 661
Query: 359 HLHKNIFSGTIPISLKNCTALMILDVGENEFVGNISTWFGERFSRVVVLILRSNQFRGLL 418
+L N SG+IP + + L ILD+ N+ G I + + + L +N G +
Sbjct: 662 NLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM-SALTMLTEIDLSNNNLSGPI 720
Query: 419 P 419
P
Sbjct: 721 P 721
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 107/376 (28%), Positives = 161/376 (42%), Gaps = 44/376 (11%)
Query: 8 PSLLDLNHLSYLGLSFNDFQGVQIPRFIGSIRNLRYLNLSDTQFVGMIPPPXXXXXXXXX 67
P L D + L +L +S N G R I + L+ LN+S QFVG IPP
Sbjct: 217 PFLGDCSALQHLDISGNKLSG-DFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLS 275
Query: 68 XXXXXXXXYVENFLWLSGLSFLEQLDLCYVNLSKASDWLLVANTLPSLVELRLSNCQLHH 127
+ +FL L LDL + A + +L + L +N
Sbjct: 276 LAENKFTGEIPDFLS-GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS-GE 333
Query: 128 LPPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSWLYRLT-HFEQLSVADRPRRIPRSM 186
LP T+ L VLDLSF++F G +P L L+ L ++ P +
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNEFS-------GELPESLTNLSASLLTLDLSSNNFSGPI-L 385
Query: 187 ASLCNLRTIYLSGCVSKELEILVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLS 246
+LC L+ L LQ++ +G + + + L +L L N + G +P S
Sbjct: 386 PNLCQ--------NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS 437
Query: 247 LNELSKLRILHLPDNKLNGTL-FEIHFVNLTKLSVSSVNE------NNLTLKVNHDWVPP 299
L LSKLR L L N L G + E+ +V + + N+ + L+ N +W+
Sbjct: 438 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWI-- 495
Query: 300 FQLVQLGLRSFYLDLFNNSFSGSISHFC--YQNLMLLTLSNNKFTGNLPNSLGSLTSLVS 357
L NN +G I + +NL +L LSNN F+GN+P LG SL+
Sbjct: 496 -------------SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW 542
Query: 358 LHLHKNIFSGTIPISL 373
L L+ N+F+GTIP ++
Sbjct: 543 LDLNTNLFNGTIPAAM 558
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 97/198 (48%), Gaps = 22/198 (11%)
Query: 229 LDTLDLGNNSIVG--LVPLSLNE-LSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNE 285
L+ LDL NSI G +V L++ +L+ L + NK++G + VNL L VSS
Sbjct: 153 LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSS--- 209
Query: 286 NNLTLKVNHDWVPPFQLVQLGLRSFYLDLFNNSFSGSISHF---CYQNLMLLTLSNNKFT 342
NN + + PF L+ +LD+ N SG S C + L LL +S+N+F
Sbjct: 210 NNFSTGI------PFLGDCSALQ--HLDISGNKLSGDFSRAISTCTE-LKLLNISSNQFV 260
Query: 343 GNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKN-CTALMILDVGENEFVGNISTWFGERF 401
G +P L SL L L +N F+G IP L C L LD+ N F G + +FG
Sbjct: 261 GPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC- 317
Query: 402 SRVVVLILRSNQFRGLLP 419
S + L L SN F G LP
Sbjct: 318 SLLESLALSSNNFSGELP 335
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 103/229 (44%), Gaps = 32/229 (13%)
Query: 218 HLTEQIGHFK---NLDTLDLGNNSIVGLVPL--SLNELSKLRILHLPDN------KLNGT 266
H+ + FK +L +LDL NS+ G V SL S L+ L++ N K++G
Sbjct: 88 HINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGG 147
Query: 267 LFEIHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLGLRSF-------------YLD 313
L +++ + + LS +S++ N+ V D + + + +LD
Sbjct: 148 L-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLD 206
Query: 314 LFNNSFSGSISHF--CYQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIP- 370
+ +N+FS I C L L +S NK +G+ ++ + T L L++ N F G IP
Sbjct: 207 VSSNNFSTGIPFLGDCSA-LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP 265
Query: 371 ISLKNCTALMILDVGENEFVGNISTWFGERFSRVVVLILRSNQFRGLLP 419
+ LK +L L + EN+F G I + + L L N F G +P
Sbjct: 266 LPLK---SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 6/80 (7%)
Query: 197 LSGCVSKELE------ILVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNEL 250
LSG + KE+ IL L + ISG + +++G + L+ LDL +N + G +P +++ L
Sbjct: 644 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 703
Query: 251 SKLRILHLPDNKLNGTLFEI 270
+ L + L +N L+G + E+
Sbjct: 704 TMLTEIDLSNNNLSGPIPEM 723
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 126/481 (26%), Positives = 188/481 (39%), Gaps = 79/481 (16%)
Query: 1 MLVGKVNPSLLDLNHLSYLGLSFNDFQGVQIPRFI-GSIRNLRYLNLSDTQFVGMIPP-- 57
VG + P L L L YL L+ N F G +IP F+ G+ L L+LS F G +PP
Sbjct: 255 QFVGPIPP--LPLKSLQYLSLAENKFTG-EIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 311
Query: 58 --PXXXXXXXXXXXXXXXXXYVENFLWLSGLSFLE----------------------QLD 93
++ L + GL L+ LD
Sbjct: 312 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 371
Query: 94 LCYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSL 153
L N S L N +L EL L N P T+SN S L L LSF+
Sbjct: 372 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS--- 428
Query: 154 IPGWGPIPSWLYRLTHFEQLSV--ADRPRRIPRSMASLCNLRTIYL-------------S 198
G IPS L L+ L + IP+ + + L T+ L S
Sbjct: 429 ----GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 484
Query: 199 GCVSKELEILVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHL 258
C + L + L ++ ++G + + IG +NL L L NNS G +P L + L L L
Sbjct: 485 NCTN--LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDL 542
Query: 259 PDNKLNGTLFEIHFVNLTKLSVSSVN-------ENNLTLKVNHDW--VPPFQLVQLGLRS 309
N NGT+ F K++ + + +N+ K H + FQ G+RS
Sbjct: 543 NTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQ----GIRS 598
Query: 310 FYLDLFNNSFSGSISHFCYQ-----------NLMLLTLSNNKFTGNLPNSLGSLTSLVSL 358
L+ + +I+ Y ++M L +S N +G +P +GS+ L L
Sbjct: 599 EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFIL 658
Query: 359 HLHKNIFSGTIPISLKNCTALMILDVGENEFVGNISTWFGERFSRVVVLILRSNQFRGLL 418
+L N SG+IP + + L ILD+ N+ G I + + + L +N G +
Sbjct: 659 NLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM-SALTMLTEIDLSNNNLSGPI 717
Query: 419 P 419
P
Sbjct: 718 P 718
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 107/376 (28%), Positives = 161/376 (42%), Gaps = 44/376 (11%)
Query: 8 PSLLDLNHLSYLGLSFNDFQGVQIPRFIGSIRNLRYLNLSDTQFVGMIPPPXXXXXXXXX 67
P L D + L +L +S N G R I + L+ LN+S QFVG IPP
Sbjct: 214 PFLGDCSALQHLDISGNKLSG-DFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLS 272
Query: 68 XXXXXXXXYVENFLWLSGLSFLEQLDLCYVNLSKASDWLLVANTLPSLVELRLSNCQLHH 127
+ +FL L LDL + A + +L + L +N
Sbjct: 273 LAENKFTGEIPDFLS-GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS-GE 330
Query: 128 LPPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSWLYRLT-HFEQLSVADRPRRIPRSM 186
LP T+ L VLDLSF++F G +P L L+ L ++ P +
Sbjct: 331 LPMDTLLKMRGLKVLDLSFNEFS-------GELPESLTNLSASLLTLDLSSNNFSGPI-L 382
Query: 187 ASLCNLRTIYLSGCVSKELEILVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLS 246
+LC L+ L LQ++ +G + + + L +L L N + G +P S
Sbjct: 383 PNLCQ--------NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS 434
Query: 247 LNELSKLRILHLPDNKLNGTL-FEIHFVNLTKLSVSSVNE------NNLTLKVNHDWVPP 299
L LSKLR L L N L G + E+ +V + + N+ + L+ N +W+
Sbjct: 435 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWI-- 492
Query: 300 FQLVQLGLRSFYLDLFNNSFSGSISHFC--YQNLMLLTLSNNKFTGNLPNSLGSLTSLVS 357
L NN +G I + +NL +L LSNN F+GN+P LG SL+
Sbjct: 493 -------------SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW 539
Query: 358 LHLHKNIFSGTIPISL 373
L L+ N+F+GTIP ++
Sbjct: 540 LDLNTNLFNGTIPAAM 555
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 97/198 (48%), Gaps = 22/198 (11%)
Query: 229 LDTLDLGNNSIVG--LVPLSLNE-LSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNE 285
L+ LDL NSI G +V L++ +L+ L + NK++G + VNL L VSS
Sbjct: 150 LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSS--- 206
Query: 286 NNLTLKVNHDWVPPFQLVQLGLRSFYLDLFNNSFSGSISHF---CYQNLMLLTLSNNKFT 342
NN + + PF L+ +LD+ N SG S C + L LL +S+N+F
Sbjct: 207 NNFSTGI------PFLGDCSALQ--HLDISGNKLSGDFSRAISTCTE-LKLLNISSNQFV 257
Query: 343 GNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKN-CTALMILDVGENEFVGNISTWFGERF 401
G +P L SL L L +N F+G IP L C L LD+ N F G + +FG
Sbjct: 258 GPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC- 314
Query: 402 SRVVVLILRSNQFRGLLP 419
S + L L SN F G LP
Sbjct: 315 SLLESLALSSNNFSGELP 332
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 103/229 (44%), Gaps = 32/229 (13%)
Query: 218 HLTEQIGHFK---NLDTLDLGNNSIVGLVPL--SLNELSKLRILHLPDN------KLNGT 266
H+ + FK +L +LDL NS+ G V SL S L+ L++ N K++G
Sbjct: 85 HINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGG 144
Query: 267 LFEIHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLGLRSF-------------YLD 313
L +++ + + LS +S++ N+ V D + + + +LD
Sbjct: 145 L-KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLD 203
Query: 314 LFNNSFSGSISHF--CYQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIP- 370
+ +N+FS I C L L +S NK +G+ ++ + T L L++ N F G IP
Sbjct: 204 VSSNNFSTGIPFLGDCSA-LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP 262
Query: 371 ISLKNCTALMILDVGENEFVGNISTWFGERFSRVVVLILRSNQFRGLLP 419
+ LK +L L + EN+F G I + + L L N F G +P
Sbjct: 263 LPLK---SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 308
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 6/80 (7%)
Query: 197 LSGCVSKELE------ILVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNEL 250
LSG + KE+ IL L + ISG + +++G + L+ LDL +N + G +P +++ L
Sbjct: 641 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 700
Query: 251 SKLRILHLPDNKLNGTLFEI 270
+ L + L +N L+G + E+
Sbjct: 701 TMLTEIDLSNNNLSGPIPEM 720
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 61/231 (26%), Positives = 105/231 (45%), Gaps = 25/231 (10%)
Query: 178 RPRRIPRSMASLCNLRTIYLSG----------CVSK--ELEILVLQSSSISGHLTEQIGH 225
+P IP S+A+L L +Y+ G ++K +L L + +++SG + + +
Sbjct: 64 KPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ 123
Query: 226 FKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVS-SVN 284
K L TLD N++ G +P S++ L L + N+++G + + + + +KL S +++
Sbjct: 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD-SYGSFSKLFTSMTIS 182
Query: 285 ENNLTLKVNHDWVPPFQLVQLGLRSFYLDLFNNSFSGSISHF--CYQNLMLLTLSNNKFT 342
N LT K+ P F + L ++DL N G S +N + L+ N
Sbjct: 183 RNRLTGKI----PPTFANLNLA----FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234
Query: 343 GNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVGENEFVGNI 393
+L +G +L L L N GT+P L L L+V N G I
Sbjct: 235 FDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284
Score = 35.0 bits (79), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 2 LVGKVNPSLLDLNHLSYLGLSFNDFQGVQIPRFIGSIRNLRYLNLSDTQFVGMIPP 57
LVG + P++ L L YL ++ + G IP F+ I+ L L+ S G +PP
Sbjct: 89 LVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLVTLDFSYNALSGTLPP 143
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 108/261 (41%), Gaps = 42/261 (16%)
Query: 112 LPSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSWLYRLTHFE 171
L SL +L S+ Q+ L PL +N ++L LD+S ++ + S L +LT+ E
Sbjct: 150 LTSLQQLSFSSNQVTDLKPL--ANLTTLERLDISSNKVSD---------ISVLAKLTNLE 198
Query: 172 QLSVADRPRRIPRSMASLCNLRTIYLSGCVSKELEILVLQSSSISGHLTEQIGHFKNLDT 231
L + + L NL + L+G K++ L NL
Sbjct: 199 SLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTL---------------ASLTNLTD 243
Query: 232 LDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLK 291
LDL NN I L PLS L+KL L L N+++ LT L+ +NEN L
Sbjct: 244 LDLANNQISNLAPLS--GLTKLTELKLGANQISNI---SPLAGLTALTNLELNENQL--- 295
Query: 292 VNHDWVPPFQLVQLGLRSFYLDLFNNSFSGSISHFCYQNLMLLTLSNNKFTGNLPNSLGS 351
D P L L YL L+ N+ S L L SNNK + +SL +
Sbjct: 296 --EDISPISNLKNL----TYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSD--VSSLAN 347
Query: 352 LTSLVSLHLHKNIFSGTIPIS 372
LT++ L N S P++
Sbjct: 348 LTNINWLSAGHNQISDLTPLA 368
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 80/296 (27%), Positives = 122/296 (41%), Gaps = 63/296 (21%)
Query: 112 LPSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSWLYRLTHFE 171
L SL +L S+ Q+ L PL +N ++L LD+S ++ + S L +LT+ E
Sbjct: 150 LTSLQQLNFSSNQVTDLKPL--ANLTTLERLDISSNKVSD---------ISVLAKLTNLE 198
Query: 172 QLSVADRPRRIPRSMASLCNLRTIYLSGCVSKELEILVLQSSSISGHLTEQIGHFKNLDT 231
L + + L NL + L+G K++ L NL
Sbjct: 199 SLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTL---------------ASLTNLTD 243
Query: 232 LDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENN---- 287
LDL NN I L PLS L+KL L L N+++ LT L+ +NEN
Sbjct: 244 LDLANNQISNLAPLS--GLTKLTELKLGANQISNI---SPLAGLTALTNLELNENQLEDI 298
Query: 288 -----------LTLKVNH--DWVPPFQLVQLGLRSFYLDLFNNSFSGSISHFCYQNLMLL 334
LTL N+ D P L +L R F+ +NN S S N+ L
Sbjct: 299 SPISNLKNLTYLTLYFNNISDISPVSSLTKLQ-RLFF---YNNKVSDVSSLANLTNINWL 354
Query: 335 TLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSG---------TIPISLKNCTALMI 381
+ +N+ + P L +LT + L L+ ++ +IP ++KN T +I
Sbjct: 355 SAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI 408
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 81/214 (37%), Gaps = 43/214 (20%)
Query: 206 EILVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNG 265
++ LQ+ + + + + NL ++ NN + + PL
Sbjct: 42 QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLK------------------- 82
Query: 266 TLFEIHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLGLRSFYLDLFNNSFSGSISH 325
NLTKL +N N + D P L L L LFNN +
Sbjct: 83 --------NLTKLVDILMNNNQI-----ADITPLANLTNL----TGLTLFNNQITDIDPL 125
Query: 326 FCYQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVG 385
NL L LS+N + ++L LTSL L+ N + P L N T L LD+
Sbjct: 126 KNLTNLNRLELSSNTISD--ISALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDIS 181
Query: 386 ENEFVGNISTWFGERFSRVVVLILRSNQFRGLLP 419
N+ V +IS + + + LI +NQ + P
Sbjct: 182 SNK-VSDISVL--AKLTNLESLIATNNQISDITP 212
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 80/296 (27%), Positives = 122/296 (41%), Gaps = 63/296 (21%)
Query: 112 LPSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSWLYRLTHFE 171
L SL +L S+ Q+ L PL +N ++L LD+S ++ + S L +LT+ E
Sbjct: 150 LTSLQQLSFSSNQVTDLKPL--ANLTTLERLDISSNKVSD---------ISVLAKLTNLE 198
Query: 172 QLSVADRPRRIPRSMASLCNLRTIYLSGCVSKELEILVLQSSSISGHLTEQIGHFKNLDT 231
L + + L NL + L+G K++ L NL
Sbjct: 199 SLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTL---------------ASLTNLTD 243
Query: 232 LDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENN---- 287
LDL NN I L PLS L+KL L L N+++ LT L+ +NEN
Sbjct: 244 LDLANNQISNLAPLS--GLTKLTELKLGANQISNI---SPLAGLTALTNLELNENQLEDI 298
Query: 288 -----------LTLKVNH--DWVPPFQLVQLGLRSFYLDLFNNSFSGSISHFCYQNLMLL 334
LTL N+ D P L +L R F+ +NN S S N+ L
Sbjct: 299 SPISNLKNLTYLTLYFNNISDISPVSSLTKLQ-RLFF---YNNKVSDVSSLANLTNINWL 354
Query: 335 TLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSG---------TIPISLKNCTALMI 381
+ +N+ + P L +LT + L L+ ++ +IP ++KN T +I
Sbjct: 355 SAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI 408
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 103/382 (26%), Positives = 157/382 (41%), Gaps = 82/382 (21%)
Query: 97 VNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPL--------------TISNFSSLTVL 142
+N ++ +D +AN L +L L L N Q+ + PL TIS+ S+L+ L
Sbjct: 97 MNNNQIADITPLAN-LTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGL 155
Query: 143 ----DLSFSQFDNSLIPGWGPIPSWLYRLTHFEQLSVADRPRRIPRSMASLCNLRTIYLS 198
LSF L P L LT E+L ++ +A L NL ++ +
Sbjct: 156 TSLQQLSFGNQVTDLKP--------LANLTTLERLDISSNKVSDISVLAKLTNLESLIAT 207
Query: 199 GCVSKE---LEILV-LQSSSISGHLTEQIG---HFKNLDTLDLGNNSIVGLVPLSLNELS 251
+ L IL L S++G+ + IG NL LDL NN I L PLS L+
Sbjct: 208 NNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS--GLT 265
Query: 252 KLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENN---------------LTLKVNH-- 294
KL L L N+++ LT L+ +NEN LTL N+
Sbjct: 266 KLTELKLGANQISNI---SPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNIS 322
Query: 295 DWVPPFQLVQLGLRSFYLDLFNNSFSGSISHFCYQNLMLLTLSNNKFTGNLPNSLGSLTS 354
D P L +L R F+ +NN S S N+ L+ +N+ + P L +LT
Sbjct: 323 DISPVSSLTKLQ-RLFF---YNNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTR 376
Query: 355 LVSLHLHKNIFSG---------TIPISLKNCTALMIL-----DVG---ENEFVGNISTWF 397
+ L L+ ++ +IP ++KN T +I D G E + N+ ++
Sbjct: 377 ITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYT 436
Query: 398 GE---RFSRVVVLILRSNQFRG 416
E FS+ V + + F G
Sbjct: 437 NEVSYTFSQPVTIGKGTTTFSG 458
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 107/261 (40%), Gaps = 43/261 (16%)
Query: 112 LPSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSWLYRLTHFE 171
L SL +L N Q+ L PL +N ++L LD+S ++ + S L +LT+ E
Sbjct: 150 LTSLQQLNFGN-QVTDLKPL--ANLTTLERLDISSNKVSD---------ISVLAKLTNLE 197
Query: 172 QLSVADRPRRIPRSMASLCNLRTIYLSGCVSKELEILVLQSSSISGHLTEQIGHFKNLDT 231
L + + L NL + L+G K++ L NL
Sbjct: 198 SLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTL---------------ASLTNLTD 242
Query: 232 LDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLK 291
LDL NN I L PLS L+KL L L N+++ LT L+ +NEN L
Sbjct: 243 LDLANNQISNLAPLS--GLTKLTELKLGANQISNI---SPLAGLTALTNLELNENQL--- 294
Query: 292 VNHDWVPPFQLVQLGLRSFYLDLFNNSFSGSISHFCYQNLMLLTLSNNKFTGNLPNSLGS 351
D P L L YL L+ N+ S L L SNNK + +SL +
Sbjct: 295 --EDISPISNLKNL----TYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSD--VSSLAN 346
Query: 352 LTSLVSLHLHKNIFSGTIPIS 372
LT++ L N S P++
Sbjct: 347 LTNINWLSAGHNQISDLTPLA 367
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 80/296 (27%), Positives = 121/296 (40%), Gaps = 64/296 (21%)
Query: 112 LPSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSWLYRLTHFE 171
L SL +L N Q+ L PL +N ++L LD+S ++ + S L +LT+ E
Sbjct: 150 LTSLQQLNFGN-QVTDLKPL--ANLTTLERLDISSNKVSD---------ISVLAKLTNLE 197
Query: 172 QLSVADRPRRIPRSMASLCNLRTIYLSGCVSKELEILVLQSSSISGHLTEQIGHFKNLDT 231
L + + L NL + L+G K++ L NL
Sbjct: 198 SLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTL---------------ASLTNLTD 242
Query: 232 LDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENN---- 287
LDL NN I L PLS L+KL L L N+++ LT L+ +NEN
Sbjct: 243 LDLANNQISNLAPLS--GLTKLTELKLGANQISNI---SPLAGLTALTNLELNENQLEDI 297
Query: 288 -----------LTLKVNH--DWVPPFQLVQLGLRSFYLDLFNNSFSGSISHFCYQNLMLL 334
LTL N+ D P L +L R F+ +NN S S N+ L
Sbjct: 298 SPISNLKNLTYLTLYFNNISDISPVSSLTKLQ-RLFF---YNNKVSDVSSLANLTNINWL 353
Query: 335 TLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSG---------TIPISLKNCTALMI 381
+ +N+ + P L +LT + L L+ ++ +IP ++KN T +I
Sbjct: 354 SAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI 407
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 90/312 (28%), Positives = 130/312 (41%), Gaps = 50/312 (16%)
Query: 86 LSFLEQLDLCYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPL-------------- 131
L L +L +N ++ +D +AN L +L L L N Q+ + PL
Sbjct: 85 LKNLTKLVDILMNNNQIADITPLAN-LTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSN 143
Query: 132 TISNFSSLTVL----DLSFSQFDNSLIPGWGPIPSWLYRLTHFEQLSVADRPRRIPRSMA 187
TIS+ S+L+ L LSF L P L LT E+L ++ +A
Sbjct: 144 TISDISALSGLTSLQQLSFGNQVTDLKP--------LANLTTLERLDISSNKVSDISVLA 195
Query: 188 SLCNLRTIYLSGCVSKE---LEILV-LQSSSISGHLTEQIG---HFKNLDTLDLGNNSIV 240
L NL ++ + + L IL L S++G+ + IG NL LDL NN I
Sbjct: 196 KLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQIS 255
Query: 241 GLVPLSLNELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLKVNHDWVPPF 300
L PLS L+KL L L N+++ LT L+ +NEN L D P
Sbjct: 256 NLAPLS--GLTKLTELKLGANQISNI---SPLAGLTALTNLELNENQL-----EDISPIS 305
Query: 301 QLVQLGLRSFYLDLFNNSFSGSISHFCYQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHL 360
L L YL L+ N+ S L L +NNK + +SL +LT++ L
Sbjct: 306 NLKNL----TYLTLYFNNISDISPVSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSA 359
Query: 361 HKNIFSGTIPIS 372
N S P++
Sbjct: 360 GHNQISDLTPLA 371
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 89/209 (42%), Gaps = 33/209 (15%)
Query: 114 SLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSWLYRLTHFE-- 171
SLVELR+ + ++ +P S ++ +++ + +NS G+ P +L +
Sbjct: 124 SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS---GFEPGAFDGLKLNYLRIS 180
Query: 172 QLSVADRPRRIPRSMASLCNLRTIYLSGCVSKELEILVLQSSSISGHLTEQIGHFKNLDT 231
+ + P+ +P ++ L L + I E + + L
Sbjct: 181 EAKLTGIPKDLPETLNEL-------------------HLDHNKIQAIELEDLLRYSKLYR 221
Query: 232 LDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLK 291
L LG+N I + SL+ L LR LHL +NKL + +L L V ++ NN+T
Sbjct: 222 LGLGHNQIRMIENGSLSFLPTLRELHLDNNKL--SRVPAGLPDLKLLQVVYLHTNNITKV 279
Query: 292 VNHDWVPPFQLVQLGLRSFY---LDLFNN 317
+D+ P V G++ Y + LFNN
Sbjct: 280 GVNDFCP----VGFGVKRAYYNGISLFNN 304
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 35.0 bits (79), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 99/245 (40%), Gaps = 32/245 (13%)
Query: 190 CNLRTIYLSGC----VSKEL----EILVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVG 241
C+LR + S V K+L +L LQ++ I+ + KNL TL L NN I
Sbjct: 31 CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 90
Query: 242 LVPLSLNELSKLRILHLPDN-------KLNGTLFE--IHFVNLTKLSVSSVNENNLTLKV 292
+ P + L KL L+L N K+ TL E +H +TK+ S N N + V
Sbjct: 91 ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV 150
Query: 293 NHDWVP---------PFQLVQLGLRSF-YLDLFNNSFSGSISHFCYQNLMLLTLSNNKFT 342
P FQ G++ Y+ + + + + +I +L L L NK T
Sbjct: 151 ELGTNPLKSSGIENGAFQ----GMKKLSYIRIADTNIT-TIPQGLPPSLTELHLDGNKIT 205
Query: 343 GNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVGENEFVGNISTWFGERFS 402
SL L +L L L N S SL N L L + N+ V ++
Sbjct: 206 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYI 265
Query: 403 RVVVL 407
+VV L
Sbjct: 266 QVVYL 270
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 99/245 (40%), Gaps = 32/245 (13%)
Query: 190 CNLRTIYLSGC----VSKEL----EILVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVG 241
C+LR + S V K+L +L LQ++ I+ + KNL TL L NN I
Sbjct: 31 CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 90
Query: 242 LVPLSLNELSKLRILHLPDN-------KLNGTLFE--IHFVNLTKLSVSSVNENNLTLKV 292
+ P + L KL L+L N K+ TL E +H +TK+ S N N + V
Sbjct: 91 ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV 150
Query: 293 NHDWVP---------PFQLVQLGLRSF-YLDLFNNSFSGSISHFCYQNLMLLTLSNNKFT 342
P FQ G++ Y+ + + + + +I +L L L NK T
Sbjct: 151 ELGTNPLKSSGIENGAFQ----GMKKLSYIRIADTNIT-TIPQGLPPSLTELHLDGNKIT 205
Query: 343 GNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVGENEFVGNISTWFGERFS 402
SL L +L L L N S SL N L L + N+ V ++
Sbjct: 206 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYI 265
Query: 403 RVVVL 407
+VV L
Sbjct: 266 QVVYL 270
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 11/94 (11%)
Query: 108 VANTLPSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSWLY-R 166
V + L +L ELRL QL LPP + + LT L L +++ + +P ++ +
Sbjct: 104 VFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS--------LPKGVFDK 155
Query: 167 LTHFEQLSVADRP-RRIPR-SMASLCNLRTIYLS 198
LT ++L + + +R+P + L L+T+ L
Sbjct: 156 LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLD 189
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 232 LDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNL 288
LDL +N + L + + L+KLR+L+L DNKL TL F L L V +N L
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKL 97
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 73/146 (50%), Gaps = 32/146 (21%)
Query: 136 FSSLTVLDLSFSQFDNSLIPGWGPIPSWLYRLTHFEQLSVADRPRRIPRSMASLCNLRTI 195
F++L L LS +Q + L P L LT E+LSV +R R L NL I
Sbjct: 62 FTNLKELHLSHNQISD-LSP--------LKDLTKLEELSV-NRNR--------LKNLNGI 103
Query: 196 YLSGCVSKELEILVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRI 255
S C+S+ L L ++ + T+ + H KNL+ L + NN + +V L LSKL +
Sbjct: 104 P-SACLSR----LFLDNNELRD--TDSLIHLKNLEILSIRNNKLKSIVMLGF--LSKLEV 154
Query: 256 LHLPDNKLNGT-----LFEIHFVNLT 276
L L N++ T L ++++++LT
Sbjct: 155 LDLHGNEITNTGGLTRLKKVNWIDLT 180
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 56/119 (47%), Gaps = 15/119 (12%)
Query: 250 LSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLGLRS 309
+ L+ LHL N+++ +LTKL SVN N L N + +P L +L
Sbjct: 62 FTNLKELHLSHNQISDL---SPLKDLTKLEELSVNRNRLK---NLNGIPSACLSRL---- 111
Query: 310 FYLDLFNNSFSGSISHFCYQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGT 368
+LD NN + S +NL +L++ NNK + LG L+ L L LH N + T
Sbjct: 112 -FLD--NNELRDTDSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT 165
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 32.0 bits (71), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 89 LEQLDLCYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQ 148
L QL+L L+K L V TLP L L LS+ QL LP L +LTVLD+SF++
Sbjct: 57 LTQLNLDRAELTK----LQVDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNR 111
Query: 149 F 149
Sbjct: 112 L 112
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 89 LEQLDLCYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQ 148
L QL+L L+K L V TLP L L LS+ QL LP L +LTVLD+SF++
Sbjct: 57 LTQLNLDRAELTK----LQVDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNR 111
Query: 149 F 149
Sbjct: 112 L 112
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 89 LEQLDLCYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQ 148
L QL+L L+K L V TLP L L LS+ QL LP L +LTVLD+SF++
Sbjct: 57 LTQLNLDRAELTK----LQVDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNR 111
Query: 149 F 149
Sbjct: 112 L 112
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 208 LVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNGTL 267
L L +S++G + + H K L L++ +N+I + P L LS+ I++L N L+ T
Sbjct: 504 LDLSHNSLTGDSMDALSHLKGL-YLNMASNNIRIIPPHLLPALSQQSIINLSHNPLDCTC 562
Query: 268 FEIHFVNLTKLSVSSVNENNLTLKVNHDWVPP 299
IHF+ K ++ + ++ T N PP
Sbjct: 563 SNIHFITWYKENLHKLEDSEETTCAN----PP 590
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 31.6 bits (70), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 89 LEQLDLCYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQ 148
L QL+L L+K L V TLP L L LS+ QL LP L +LTVLD+SF++
Sbjct: 58 LTQLNLDRCELTK----LQVDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNR 112
Query: 149 F 149
Sbjct: 113 L 113
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 89 LEQLDLCYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQ 148
L QL+L L+K L V TLP L L LS+ QL LP L +LTVLD+SF++
Sbjct: 57 LTQLNLDRCELTK----LQVDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNR 111
Query: 149 F 149
Sbjct: 112 L 112
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 89 LEQLDLCYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQ 148
L QL+L L+K L V TLP L L LS+ QL LP L +LTVLD+SF++
Sbjct: 57 LTQLNLDRCELTK----LQVDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNR 111
Query: 149 F 149
Sbjct: 112 L 112
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 89 LEQLDLCYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQ 148
L QL+L L+K L V TLP L L LS+ QL LP L +LTVLD+SF++
Sbjct: 57 LTQLNLDRCELTK----LQVDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNR 111
Query: 149 F 149
Sbjct: 112 L 112
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 89 LEQLDLCYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQ 148
L QL+L L+K L V TLP L L LS+ QL LP L +LTVLD+SF++
Sbjct: 57 LTQLNLDRCELTK----LQVDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNR 111
Query: 149 F 149
Sbjct: 112 L 112
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 89 LEQLDLCYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQ 148
L QL+L L+K L V TLP L L LS+ QL LP L +LTVLD+SF++
Sbjct: 57 LTQLNLDRCELTK----LQVDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNR 111
Query: 149 F 149
Sbjct: 112 L 112
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 89 LEQLDLCYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQ 148
L QL+L L+K L V TLP L L LS+ QL LP L +LTVLD+SF++
Sbjct: 57 LTQLNLDRCELTK----LQVDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNR 111
Query: 149 F 149
Sbjct: 112 L 112
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 112 LPSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQF 149
L +L L LS CQL L P ++ SSL VL++S + F
Sbjct: 493 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530
Score = 28.1 bits (61), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 13 LNHLSYLGLSFNDFQGVQIPRFIGSIRNLRYLNLSDTQFVGMIP 56
L+ L L ++ N FQ +P +RNL +L+LS Q + P
Sbjct: 468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 511
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 7 NPSLLDLNHLSYLGLSFNDFQGVQIPRFIGSIRNLRYLNLSDTQF 51
N S + L +L LSFNDF + + + G++ L +L LS +F
Sbjct: 114 NISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF 158
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 112 LPSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQF 149
L +L L LS CQL L P ++ SSL VL++S + F
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 112 LPSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQF 149
L +L L LS CQL L P ++ SSL VL++S + F
Sbjct: 174 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 13 LNHLSYLGLSFNDFQGVQIPRFIGSIRNLRYLNLSDTQFVGMIP 56
L+ L L ++ N FQ +P +RNL +L+LS Q + P
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 192
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 9/69 (13%)
Query: 112 LPSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSWLY-RLTHF 170
L +L L LS CQL L P ++ SSL VL+++ +Q + +P ++ RLT
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS--------VPDGIFDRLTSL 520
Query: 171 EQLSVADRP 179
+++ + P
Sbjct: 521 QKIWLHTNP 529
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 205 LEILVLQSSSISGHLTEQI-GHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKL 263
LE+L + +S + I +NL LDL + L P + N LS L++L++ N+L
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506
>pdb|3PZF|A Chain A, 1.75a Resolution Structure Of Serpin-2 From Anopheles
Gambiae
Length = 397
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 6/100 (6%)
Query: 216 SGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNGTLFEIHFVNL 275
+ EQ G F ++ DLG + + +P N+L+ IL PDN +N L I+ +L
Sbjct: 212 NAQYMEQNGQFYYDNSADLG--AQILRLPYRGNKLAMYFILPNPDNTVNQVLDRINSASL 269
Query: 276 TK-LSVSSVNENNLTL-KVNHDWVPPFQ--LVQLGLRSFY 311
+ L NE N+TL K D+ L Q+G+R +
Sbjct: 270 HQALWYMEENEVNVTLPKFKFDFSEQLNEPLQQVGIREIF 309
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 44/104 (42%), Gaps = 8/104 (7%)
Query: 225 HFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVN 284
H LD L LG N + L + L+KL+ L L N+L ++ F LT L S++
Sbjct: 105 HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLS 163
Query: 285 ENNLTLKVNHDWVPPFQLVQLGLRSFYLDLFNNSFSGSISHFCY 328
N L VP +LG + + LF N F S Y
Sbjct: 164 TNQL------QSVPHGAFDRLG-KLQTITLFGNQFDCSRCEILY 200
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 108 VANTLPS-LVELRLSNCQLHHLPPLTISNFSSLTVLDLSFS 147
+ + LPS + L L++ QL LPP + +S L +LD F+
Sbjct: 19 IPDDLPSNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFN 59
>pdb|2VDW|B Chain B, Guanosine N7 Methyl-Transferase Sub-Complex (D1-D12) Of
The Vaccinia Virus Mrna Capping Enzyme
pdb|2VDW|D Chain D, Guanosine N7 Methyl-Transferase Sub-Complex (D1-D12) Of
The Vaccinia Virus Mrna Capping Enzyme
pdb|2VDW|F Chain F, Guanosine N7 Methyl-Transferase Sub-Complex (D1-D12) Of
The Vaccinia Virus Mrna Capping Enzyme
pdb|2VDW|H Chain H, Guanosine N7 Methyl-Transferase Sub-Complex (D1-D12) Of
The Vaccinia Virus Mrna Capping Enzyme
Length = 287
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 28/66 (42%)
Query: 156 GWGPIPSWLYRLTHFEQLSVADRPRRIPRSMASLCNLRTIYLSGCVSKELEILVLQSSSI 215
G P+PS Y +F Q+S + R+P M L + + K EIL + S
Sbjct: 30 GKSPLPSLEYGANYFLQISRVNDLNRMPTDMLKLFTHDIMLPESDLDKVYEILKINSVKY 89
Query: 216 SGHLTE 221
G T+
Sbjct: 90 YGRSTK 95
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 44/104 (42%), Gaps = 8/104 (7%)
Query: 225 HFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVN 284
H LD L LG N + L + L+KL+ L L N+L ++ F LT L S++
Sbjct: 105 HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLS 163
Query: 285 ENNLTLKVNHDWVPPFQLVQLGLRSFYLDLFNNSFSGSISHFCY 328
N L VP +LG + + LF N F S Y
Sbjct: 164 TNQL------QSVPHGAFDRLG-KLQTITLFGNQFDCSRCETLY 200
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,511,624
Number of Sequences: 62578
Number of extensions: 435186
Number of successful extensions: 1176
Number of sequences better than 100.0: 85
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 61
Number of HSP's that attempted gapping in prelim test: 849
Number of HSP's gapped (non-prelim): 249
length of query: 420
length of database: 14,973,337
effective HSP length: 101
effective length of query: 319
effective length of database: 8,652,959
effective search space: 2760293921
effective search space used: 2760293921
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)