Query 037249
Match_columns 420
No_of_seqs 195 out of 2780
Neff 10.8
Searched_HMMs 46136
Date Fri Mar 29 10:18:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037249.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037249hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 6.2E-44 1.3E-48 370.6 26.3 406 3-420 153-589 (968)
2 PLN00113 leucine-rich repeat r 100.0 7.7E-43 1.7E-47 362.4 27.0 412 2-420 105-565 (968)
3 KOG4194 Membrane glycoprotein 100.0 8.4E-34 1.8E-38 255.3 6.2 348 17-385 81-447 (873)
4 KOG4194 Membrane glycoprotein 100.0 4.5E-32 9.7E-37 244.2 4.1 337 9-362 97-448 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 6.4E-33 1.4E-37 239.1 -6.1 387 5-415 59-541 (565)
6 KOG0444 Cytoskeletal regulator 100.0 1.9E-30 4.2E-35 235.8 -0.4 337 5-390 23-375 (1255)
7 KOG0444 Cytoskeletal regulator 100.0 1.3E-30 2.9E-35 236.8 -1.6 367 11-415 4-375 (1255)
8 KOG0472 Leucine-rich repeat pr 99.9 4.8E-30 1E-34 221.5 -7.8 361 6-396 129-546 (565)
9 KOG0618 Serine/threonine phosp 99.9 1E-28 2.3E-33 233.7 -4.1 374 13-415 44-465 (1081)
10 KOG0618 Serine/threonine phosp 99.9 3.5E-27 7.5E-32 223.4 -2.6 360 4-413 58-487 (1081)
11 PLN03210 Resistant to P. syrin 99.9 1.1E-21 2.3E-26 205.1 23.6 276 87-388 611-904 (1153)
12 PLN03210 Resistant to P. syrin 99.9 2.6E-21 5.6E-26 202.2 22.2 328 8-365 552-905 (1153)
13 KOG4237 Extracellular matrix p 99.8 1.4E-22 3.1E-27 175.1 -1.6 372 16-412 69-498 (498)
14 PRK15387 E3 ubiquitin-protein 99.8 4.1E-19 8.9E-24 173.4 16.0 124 227-397 342-465 (788)
15 cd00116 LRR_RI Leucine-rich re 99.8 2.7E-19 5.8E-24 163.2 4.5 290 18-414 2-319 (319)
16 PRK15387 E3 ubiquitin-protein 99.8 1.1E-17 2.5E-22 163.4 15.2 265 14-374 201-466 (788)
17 KOG4237 Extracellular matrix p 99.7 1.8E-19 4E-24 156.1 -3.0 283 66-390 70-359 (498)
18 PRK15370 E3 ubiquitin-protein 99.7 4.1E-16 8.9E-21 153.4 13.6 246 114-415 179-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 1.7E-17 3.8E-22 151.3 1.4 266 6-287 15-318 (319)
20 PRK15370 E3 ubiquitin-protein 99.7 6.6E-16 1.4E-20 152.0 12.2 120 228-390 305-428 (754)
21 KOG0617 Ras suppressor protein 99.5 3.5E-15 7.6E-20 115.2 -2.5 151 39-202 33-185 (264)
22 KOG0617 Ras suppressor protein 99.4 7.5E-15 1.6E-19 113.4 -2.2 175 206-416 36-213 (264)
23 KOG1909 Ran GTPase-activating 99.4 7.7E-14 1.7E-18 119.8 -0.1 192 8-202 24-253 (382)
24 KOG1909 Ran GTPase-activating 99.3 7.4E-13 1.6E-17 113.9 3.5 138 227-389 157-310 (382)
25 KOG3207 Beta-tubulin folding c 99.3 2E-12 4.3E-17 114.4 2.7 92 185-287 141-233 (505)
26 KOG3207 Beta-tubulin folding c 99.2 2.5E-12 5.4E-17 113.7 1.3 112 61-178 119-232 (505)
27 KOG1259 Nischarin, modulator o 99.2 5.9E-12 1.3E-16 106.2 1.6 129 251-416 284-413 (490)
28 PF14580 LRR_9: Leucine-rich r 99.2 2E-11 4.4E-16 98.4 4.4 130 38-177 18-149 (175)
29 PF14580 LRR_9: Leucine-rich r 99.2 4.4E-11 9.5E-16 96.5 5.3 79 329-408 64-146 (175)
30 PLN03150 hypothetical protein; 99.0 8.9E-10 1.9E-14 108.4 8.4 109 311-419 422-532 (623)
31 KOG2120 SCF ubiquitin ligase, 99.0 1.1E-11 2.3E-16 104.5 -4.4 69 221-289 204-273 (419)
32 PLN03150 hypothetical protein; 99.0 5.6E-10 1.2E-14 109.8 6.8 90 330-420 419-508 (623)
33 PF13855 LRR_8: Leucine rich r 99.0 5.6E-10 1.2E-14 74.0 4.0 59 330-388 2-60 (61)
34 KOG4658 Apoptotic ATPase [Sign 99.0 4.7E-10 1E-14 112.9 5.0 84 328-412 769-856 (889)
35 KOG0532 Leucine-rich repeat (L 99.0 4.7E-11 1E-15 109.2 -2.1 124 229-388 145-271 (722)
36 KOG4341 F-box protein containi 99.0 3.5E-11 7.7E-16 106.0 -2.8 80 328-407 371-457 (483)
37 COG4886 Leucine-rich repeat (L 98.9 8.2E-10 1.8E-14 103.7 5.3 63 329-394 232-294 (394)
38 PF13855 LRR_8: Leucine rich r 98.9 1E-09 2.3E-14 72.7 3.9 61 353-414 1-61 (61)
39 KOG2120 SCF ubiquitin ligase, 98.9 5.2E-11 1.1E-15 100.5 -3.9 155 40-200 186-348 (419)
40 KOG1259 Nischarin, modulator o 98.9 6.1E-10 1.3E-14 94.3 2.4 63 225-289 350-412 (490)
41 KOG4341 F-box protein containi 98.9 1.5E-10 3.2E-15 102.2 -1.8 282 88-414 139-438 (483)
42 KOG4658 Apoptotic ATPase [Sign 98.9 3.8E-09 8.2E-14 106.5 7.0 111 10-122 567-677 (889)
43 COG4886 Leucine-rich repeat (L 98.9 6.2E-09 1.3E-13 97.8 7.8 176 60-264 113-290 (394)
44 KOG0532 Leucine-rich repeat (L 98.8 1.9E-10 4.1E-15 105.4 -2.6 168 208-415 80-247 (722)
45 KOG2982 Uncharacterized conser 98.8 4.7E-09 1E-13 88.9 3.3 195 64-264 46-262 (418)
46 KOG0531 Protein phosphatase 1, 98.8 1.1E-09 2.4E-14 103.1 -0.8 150 37-202 70-220 (414)
47 KOG0531 Protein phosphatase 1, 98.8 1E-09 2.2E-14 103.3 -1.1 63 85-151 70-132 (414)
48 KOG2982 Uncharacterized conser 98.7 1.2E-08 2.5E-13 86.5 2.4 179 206-392 74-264 (418)
49 COG5238 RNA1 Ran GTPase-activa 98.6 1.3E-08 2.8E-13 85.1 1.1 243 10-264 26-316 (388)
50 KOG1859 Leucine-rich repeat pr 98.6 1.3E-09 2.8E-14 102.8 -5.8 126 229-390 166-292 (1096)
51 KOG1859 Leucine-rich repeat pr 98.5 7.5E-09 1.6E-13 97.8 -3.6 124 64-202 165-291 (1096)
52 COG5238 RNA1 Ran GTPase-activa 98.4 8.7E-08 1.9E-12 80.3 0.3 89 327-415 212-316 (388)
53 KOG3665 ZYG-1-like serine/thre 98.2 4E-07 8.7E-12 89.7 2.0 133 15-150 123-263 (699)
54 PF12799 LRR_4: Leucine Rich r 98.2 1.9E-06 4.1E-11 52.2 3.2 36 354-390 2-37 (44)
55 KOG1644 U2-associated snRNP A' 98.1 5.4E-06 1.2E-10 66.7 5.6 105 39-146 42-149 (233)
56 KOG4579 Leucine-rich repeat (L 98.0 3.6E-07 7.8E-12 68.6 -2.1 86 328-417 76-161 (177)
57 PF12799 LRR_4: Leucine Rich r 97.9 9.7E-06 2.1E-10 49.0 3.3 37 329-366 1-37 (44)
58 KOG4579 Leucine-rich repeat (L 97.9 9.8E-07 2.1E-11 66.3 -1.6 84 328-414 52-135 (177)
59 KOG1644 U2-associated snRNP A' 97.9 1.5E-05 3.3E-10 64.2 4.3 100 311-411 46-149 (233)
60 KOG3665 ZYG-1-like serine/thre 97.9 9.6E-06 2.1E-10 80.2 3.5 132 11-144 145-282 (699)
61 KOG1947 Leucine rich repeat pr 97.8 5E-06 1.1E-10 80.4 0.8 63 86-148 242-306 (482)
62 KOG2739 Leucine-rich acidic nu 97.7 2.5E-05 5.5E-10 65.7 3.2 82 61-143 63-149 (260)
63 PRK15386 type III secretion pr 97.7 0.00019 4.1E-09 65.7 8.4 75 186-287 48-123 (426)
64 PRK15386 type III secretion pr 97.6 0.00019 4.1E-09 65.7 7.7 139 223-388 48-188 (426)
65 PF13306 LRR_5: Leucine rich r 97.5 0.00029 6.2E-09 54.6 6.8 122 9-139 7-128 (129)
66 KOG1947 Leucine rich repeat pr 97.5 1.4E-05 3.1E-10 77.3 -0.9 64 110-179 240-306 (482)
67 KOG2123 Uncharacterized conser 97.4 4.9E-06 1.1E-10 70.3 -4.6 97 88-196 20-123 (388)
68 PF13306 LRR_5: Leucine rich r 97.4 0.00081 1.8E-08 52.0 7.3 14 348-361 76-89 (129)
69 KOG2739 Leucine-rich acidic nu 97.3 0.00011 2.4E-09 61.9 2.1 98 314-411 50-152 (260)
70 KOG2123 Uncharacterized conser 97.2 1.4E-05 3.1E-10 67.6 -4.5 101 38-143 18-123 (388)
71 KOG3864 Uncharacterized conser 96.0 0.0011 2.3E-08 53.8 -1.3 35 353-387 151-186 (221)
72 KOG4308 LRR-containing protein 95.9 0.00011 2.4E-09 69.6 -8.4 283 6-292 107-448 (478)
73 KOG4308 LRR-containing protein 95.8 8.6E-05 1.9E-09 70.4 -9.5 71 219-289 107-185 (478)
74 PF13516 LRR_6: Leucine Rich r 95.6 0.0059 1.3E-07 31.3 1.1 23 376-398 1-23 (24)
75 KOG3864 Uncharacterized conser 95.2 0.0062 1.3E-07 49.6 0.5 84 63-146 101-185 (221)
76 PF00560 LRR_1: Leucine Rich R 95.1 0.012 2.5E-07 29.5 1.1 18 355-373 2-19 (22)
77 PF13504 LRR_7: Leucine rich r 94.1 0.035 7.5E-07 25.7 1.3 8 356-363 4-11 (17)
78 smart00368 LRR_RI Leucine rich 93.4 0.046 9.9E-07 29.2 1.2 24 377-400 2-25 (28)
79 smart00367 LRR_CC Leucine-rich 89.3 0.22 4.7E-06 26.0 1.1 23 376-398 1-24 (26)
80 KOG0473 Leucine-rich repeat pr 88.5 0.016 3.5E-07 48.3 -5.3 59 330-390 66-124 (326)
81 smart00369 LRR_TYP Leucine-ric 87.7 0.6 1.3E-05 24.2 2.2 21 113-133 2-22 (26)
82 smart00370 LRR Leucine-rich re 87.7 0.6 1.3E-05 24.2 2.2 21 113-133 2-22 (26)
83 KOG4242 Predicted myosin-I-bin 87.3 5.4 0.00012 37.5 9.2 61 331-391 415-482 (553)
84 KOG3763 mRNA export factor TAP 83.2 0.46 1E-05 45.1 0.7 68 84-151 215-284 (585)
85 KOG3763 mRNA export factor TAP 79.2 1.3 2.9E-05 42.1 2.1 81 328-408 217-307 (585)
86 smart00364 LRR_BAC Leucine-ric 77.5 1.6 3.5E-05 22.7 1.2 16 354-370 3-18 (26)
87 smart00365 LRR_SD22 Leucine-ri 74.6 2.6 5.7E-05 21.9 1.6 15 376-390 1-15 (26)
88 KOG0473 Leucine-rich repeat pr 72.9 0.17 3.6E-06 42.5 -4.8 86 9-98 37-122 (326)
89 KOG4242 Predicted myosin-I-bin 41.9 72 0.0016 30.4 5.8 17 13-29 164-180 (553)
90 PF07723 LRR_2: Leucine Rich R 23.6 65 0.0014 16.6 1.5 7 90-96 3-9 (26)
91 TIGR00864 PCC polycystin catio 21.0 56 0.0012 38.4 1.8 32 335-366 1-32 (2740)
92 smart00446 LRRcap occurring C- 20.3 41 0.00088 17.6 0.3 14 373-386 9-22 (26)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=6.2e-44 Score=370.58 Aligned_cols=406 Identities=32% Similarity=0.439 Sum_probs=254.9
Q ss_pred CCCCCCccCCCCCCcEEecccCCCCCCCchhhhhccccCceeecCCCcccCCCCCCCCCCCCccEEEeeccccccccccc
Q 037249 3 VGKVNPSLLDLNHLSYLGLSFNDFQGVQIPRFIGSIRNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENFLW 82 (420)
Q Consensus 3 ~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 82 (420)
.|.+|+.+.++++|++|++++|.+... +|..+.++++|++|++++|.+.+.+|..++++++|++|++++|.+....+..
T Consensus 153 ~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 231 (968)
T PLN00113 153 SGEIPNDIGSFSSLKVLDLGGNVLVGK-IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE 231 (968)
T ss_pred cccCChHHhcCCCCCEEECccCccccc-CChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh
Confidence 345555556666666666665555433 4555555566666666666555555555555556666666555555444444
Q ss_pred ccCCCcccEEEcccccCCCccchhhhhCCCCCCcEEEccCCCCCCCCchhhccCCCCCEEEccCCcCCCCCCCCCCCCCh
Q 037249 83 LSGLSFLEQLDLCYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPS 162 (420)
Q Consensus 83 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 162 (420)
+.++++|++|++++|.+... ....+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. +.++.
T Consensus 232 l~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-------~~~p~ 302 (968)
T PLN00113 232 IGGLTSLNHLDLVYNNLTGP--IPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS-------GEIPE 302 (968)
T ss_pred HhcCCCCCEEECcCceeccc--cChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec-------cCCCh
Confidence 55556666666655554422 1224445555666666655555444444555555666666555543 22444
Q ss_pred hhhhccccccccccCCC--CccccccccccCCcEEeeccCcc-----------cceeEEEeecCcccccchhhhhcCCCC
Q 037249 163 WLYRLTHFEQLSVADRP--RRIPRSMASLCNLRTIYLSGCVS-----------KELEILVLQSSSISGHLTEQIGHFKNL 229 (420)
Q Consensus 163 ~l~~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~l~~~~~-----------~~l~~L~l~~~~~~~~~~~~l~~~~~L 229 (420)
.+..+++|+.|++.++. ...|.++..+++|+.|++++|.+ +.++.|++++|.+.+..+..+..+++|
T Consensus 303 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L 382 (968)
T PLN00113 303 LVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNL 382 (968)
T ss_pred hHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCC
Confidence 55555555555555554 33445555555555555555543 245555555555555555555555555
Q ss_pred CEEECCCcccccCCccchhhccCCcEeecCCccccCccchhhhcccCccceEeecCCccceecCCCCCCccceeeecccc
Q 037249 230 DTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLGLRS 309 (420)
Q Consensus 230 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 309 (420)
+.+++++|.+.+..|..++.+++|+.|++++|.+++..+. .+..+++|+.+++++|.+....+..+.....++.+.+..
T Consensus 383 ~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 461 (968)
T PLN00113 383 FKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPS-EFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLAR 461 (968)
T ss_pred CEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECCh-hHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcC
Confidence 5555555555555555555566666666666665554444 455566666666666655554444444444444444333
Q ss_pred e----------------eeccccCccccccccc--ccCCccEEEccCCccccCCcccccccccccEEeccCCccccccCc
Q 037249 310 F----------------YLDLFNNSFSGSISHF--CYQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIPI 371 (420)
Q Consensus 310 ~----------------~l~l~~~~~~~~~~~~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 371 (420)
+ .+++++|.+.+..+.. .+++|++|++++|++.+.+|..+..+++|+.|++++|.+++.+|.
T Consensus 462 n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 541 (968)
T PLN00113 462 NKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPA 541 (968)
T ss_pred ceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCCh
Confidence 2 5777888887776654 567889999999999888888888999999999999999888888
Q ss_pred cccccCCCceEeCCCcccccccchhhhhcCCCceEEEeeccccccCCCC
Q 037249 372 SLKNCTALMILDVGENEFVGNISTWFGERFSRVVVLILRSNQFRGLLPT 420 (420)
Q Consensus 372 ~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~ 420 (420)
.++.+++|++|++++|++++.+|..+.. +++|++|++++|++++.+|.
T Consensus 542 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 542 SFSEMPVLSQLDLSQNQLSGEIPKNLGN-VESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred hHhCcccCCEEECCCCcccccCChhHhc-CcccCEEeccCCcceeeCCC
Confidence 8999999999999999999888988886 89999999999999998884
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=7.7e-43 Score=362.42 Aligned_cols=412 Identities=31% Similarity=0.452 Sum_probs=267.0
Q ss_pred CCCCCCCccC-CCCCCcEEecccCCCCCCCchhhhhccccCceeecCCCcccCCCCCCCCCCCCccEEEeeccccccccc
Q 037249 2 LVGKVNPSLL-DLNHLSYLGLSFNDFQGVQIPRFIGSIRNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENF 80 (420)
Q Consensus 2 ~~~~l~~~~~-~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 80 (420)
+.|.+|..+. .+++|++|++++|.+.+. .|. +.+++|++|++++|.+.+.+|..++++++|++|++++|.+....+
T Consensus 105 ~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~-~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p 181 (968)
T PLN00113 105 LSGPIPDDIFTTSSSLRYLNLSNNNFTGS-IPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIP 181 (968)
T ss_pred cCCcCChHHhccCCCCCEEECcCCccccc-cCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCC
Confidence 4567777644 778888888877766533 221 335556666666666555555555556666666666655544444
Q ss_pred ccccCCCcccEEEcccccCCCccchhhhhCCCCCCcEEEccCCCCCCCCchhhccCCCCCEEEccCCcCCCCCCCC----
Q 037249 81 LWLSGLSFLEQLDLCYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSLIPG---- 156 (420)
Q Consensus 81 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~---- 156 (420)
..+.++++|++|++++|.+... ....+..+++|++|++++|.+....+..+..+++|++|++++|.+.......
T Consensus 182 ~~~~~l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 259 (968)
T PLN00113 182 NSLTNLTSLEFLTLASNQLVGQ--IPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNL 259 (968)
T ss_pred hhhhhCcCCCeeeccCCCCcCc--CChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCC
Confidence 4455555555555555554322 1123444555555555555554444444455555555555555443100000
Q ss_pred -------------CCCCChhhhhccccccccccCCC--CccccccccccCCcEEeeccCcc-----------cceeEEEe
Q 037249 157 -------------WGPIPSWLYRLTHFEQLSVADRP--RRIPRSMASLCNLRTIYLSGCVS-----------KELEILVL 210 (420)
Q Consensus 157 -------------~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~l~~~~~-----------~~l~~L~l 210 (420)
.+.++..+..+++|+.|+++++. ..+|.++..+++|+.|++++|.+ +.++.|++
T Consensus 260 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 339 (968)
T PLN00113 260 KNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQL 339 (968)
T ss_pred CCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEEC
Confidence 01234445555555555555554 33455555555566665555532 34555666
Q ss_pred ecCcccccchhhhhcCCCCCEEECCCcccccCCccchhhccCCcEeecCCccccCccchhhhcccCccceEeecCCccce
Q 037249 211 QSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTL 290 (420)
Q Consensus 211 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~ 290 (420)
++|.+.+..|..++.+++|+.+++++|.+.+..|..+..+++|+.|++++|.+.+..+. .+..+++|+.+++++|.+..
T Consensus 340 ~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~-~~~~~~~L~~L~L~~n~l~~ 418 (968)
T PLN00113 340 WSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPK-SLGACRSLRRVRLQDNSFSG 418 (968)
T ss_pred cCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCH-HHhCCCCCCEEECcCCEeee
Confidence 66666555566666666666666666666555555555566666666666666655554 56677888888888888877
Q ss_pred ecCCCCCCccceeeecccce-----------------eeccccCccccccccc-ccCCccEEEccCCccccCCccccccc
Q 037249 291 KVNHDWVPPFQLVQLGLRSF-----------------YLDLFNNSFSGSISHF-CYQNLMLLTLSNNKFTGNLPNSLGSL 352 (420)
Q Consensus 291 ~~~~~~~~~~~~~~l~~~~~-----------------~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~~~~~ 352 (420)
..+..+.....++.+.+..+ .+++++|.+.+..+.. ..++|+.|++++|++++..|..+..+
T Consensus 419 ~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l 498 (968)
T PLN00113 419 ELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSL 498 (968)
T ss_pred ECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhh
Confidence 77666666666665555443 4566666666655544 45788999999999988888899999
Q ss_pred ccccEEeccCCccccccCccccccCCCceEeCCCcccccccchhhhhcCCCceEEEeeccccccCCCC
Q 037249 353 TSLVSLHLHKNIFSGTIPISLKNCTALMILDVGENEFVGNISTWFGERFSRVVVLILRSNQFRGLLPT 420 (420)
Q Consensus 353 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~ 420 (420)
++|+.|++++|.+.+.+|+.+..+++|++|++++|.+++..|..+.. +++|++|++++|++++.+|.
T Consensus 499 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~p~ 565 (968)
T PLN00113 499 SELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSE-MPVLSQLDLSQNQLSGEIPK 565 (968)
T ss_pred hccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhC-cccCCEEECCCCcccccCCh
Confidence 99999999999999899999999999999999999999999999886 99999999999999999884
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=8.4e-34 Score=255.32 Aligned_cols=348 Identities=24% Similarity=0.252 Sum_probs=261.5
Q ss_pred cEEecccCCCCCCCchhhhhccccCceeecCCCcccCCCCCCCCCCCCccEEEeecccccccccccccCCCcccEEEccc
Q 037249 17 SYLGLSFNDFQGVQIPRFIGSIRNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENFLWLSGLSFLEQLDLCY 96 (420)
Q Consensus 17 ~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 96 (420)
+.||+++|.+... -+..|.++++|+.+.+..|.++ .+|...+...+|+.|+|.+|.|+....+.+.-++.|+.|+++.
T Consensus 81 ~~LdlsnNkl~~i-d~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 81 QTLDLSNNKLSHI-DFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR 158 (873)
T ss_pred eeeeccccccccC-cHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence 4599999988866 5667788999999999999987 7888767777899999999999988888888899999999999
Q ss_pred ccCCCccchhhhhCCCCCCcEEEccCCCCCCCCchhhccCCCCCEEEccCCcCCCCCCCCCCCCCh-hhhhccccccccc
Q 037249 97 VNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPS-WLYRLTHFEQLSV 175 (420)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~l~~~~~L~~L~l 175 (420)
|.+..++. ..+..-.++++|+++.|.++++....|..+.+|.+|.++.|+++. +|. .+.++++|+.|++
T Consensus 159 N~is~i~~--~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNritt--------Lp~r~Fk~L~~L~~LdL 228 (873)
T KOG4194|consen 159 NLISEIPK--PSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITT--------LPQRSFKRLPKLESLDL 228 (873)
T ss_pred chhhcccC--CCCCCCCCceEEeeccccccccccccccccchheeeecccCcccc--------cCHHHhhhcchhhhhhc
Confidence 99888753 244556789999999999999988889999999999999999875 554 4556999999999
Q ss_pred cCCCCcc--ccccccccCCcEEeeccCcc-----------cceeEEEeecCcccccchhhhhcCCCCCEEECCCcccccC
Q 037249 176 ADRPRRI--PRSMASLCNLRTIYLSGCVS-----------KELEILVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVGL 242 (420)
Q Consensus 176 ~~~~~~~--~~~~~~~~~L~~L~l~~~~~-----------~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 242 (420)
..+.-.+ -..|..+++|+.|.+.+|.+ .+++.|++..|.+...-..++-++..|+.|++++|.+..+
T Consensus 229 nrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~ri 308 (873)
T KOG4194|consen 229 NRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRI 308 (873)
T ss_pred cccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhhee
Confidence 9888333 34667888999999988876 4667778888877776667777788888888888888877
Q ss_pred CccchhhccCCcEeecCCccccCccchhhhcccCccceEeecCCccceecCCCCCCccceeeecccceeeccccCccccc
Q 037249 243 VPLSLNELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLGLRSFYLDLFNNSFSGS 322 (420)
Q Consensus 243 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~ 322 (420)
.+.....+++|++|++++|.++ .++..+|..+..|++|+++.|.+.-.....|.....++ .+++.+|.+.+.
T Consensus 309 h~d~WsftqkL~~LdLs~N~i~-~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~-------~LdLr~N~ls~~ 380 (873)
T KOG4194|consen 309 HIDSWSFTQKLKELDLSSNRIT-RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLH-------KLDLRSNELSWC 380 (873)
T ss_pred ecchhhhcccceeEeccccccc-cCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhh-------hhcCcCCeEEEE
Confidence 7777777788888888888887 66666778888888888888877765555555555544 334444444433
Q ss_pred ccc-----cccCCccEEEccCCccccCCcccccccccccEEeccCCccccccCccccccCCCceEeCC
Q 037249 323 ISH-----FCYQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVG 385 (420)
Q Consensus 323 ~~~-----~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 385 (420)
+.+ ..+++|+.|++.+|++......+|.++++|+.|++.+|.+....+++|... .|++|-+.
T Consensus 381 IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 381 IEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred EecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence 322 134666666666666664444566666666666666666665566666655 66666553
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.97 E-value=4.5e-32 Score=244.25 Aligned_cols=337 Identities=23% Similarity=0.262 Sum_probs=287.9
Q ss_pred ccCCCCCCcEEecccCCCCCCCchhhhhccccCceeecCCCcccCCCCCCCCCCCCccEEEeecccccccccccccCCCc
Q 037249 9 SLLDLNHLSYLGLSFNDFQGVQIPRFIGSIRNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENFLWLSGLSF 88 (420)
Q Consensus 9 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 88 (420)
-|.++++|+.+++.+|.++ .+|.......+|+.|++..|.|+.+-.+.++.++-||+||||.|.++......+..-.+
T Consensus 97 ~f~nl~nLq~v~l~~N~Lt--~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~n 174 (873)
T KOG4194|consen 97 FFYNLPNLQEVNLNKNELT--RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVN 174 (873)
T ss_pred HHhcCCcceeeeeccchhh--hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCC
Confidence 3578999999999999887 67877777888999999999999877788999999999999999999988888888899
Q ss_pred ccEEEcccccCCCccchhhhhCCCCCCcEEEccCCCCCCCCchhhccCCCCCEEEccCCcCCCCCCCCCCCCChhhhhcc
Q 037249 89 LEQLDLCYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSWLYRLT 168 (420)
Q Consensus 89 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~ 168 (420)
+++|++++|++++... ..+..+.+|..|.+++|+++.++...|.++++|+.|++..|.+... -...+++++
T Consensus 175 i~~L~La~N~It~l~~--~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv-------e~ltFqgL~ 245 (873)
T KOG4194|consen 175 IKKLNLASNRITTLET--GHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV-------EGLTFQGLP 245 (873)
T ss_pred ceEEeecccccccccc--ccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee-------hhhhhcCch
Confidence 9999999999998854 3566788999999999999999999999999999999999988531 134577889
Q ss_pred ccccccccCCC--CccccccccccCCcEEeeccCcc-----------cceeEEEeecCcccccchhhhhcCCCCCEEECC
Q 037249 169 HFEQLSVADRP--RRIPRSMASLCNLRTIYLSGCVS-----------KELEILVLQSSSISGHLTEQIGHFKNLDTLDLG 235 (420)
Q Consensus 169 ~L~~L~l~~~~--~~~~~~~~~~~~L~~L~l~~~~~-----------~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 235 (420)
+|+.|.+..+. .--...|..+.++++|++..|.+ ..++.|+++.|.|..+.++.+.-.++|++|+|+
T Consensus 246 Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs 325 (873)
T KOG4194|consen 246 SLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLS 325 (873)
T ss_pred hhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecc
Confidence 99999998888 33456778899999999999866 678889999999999889999999999999999
Q ss_pred CcccccCCccchhhccCCcEeecCCccccCccchhhhcccCccceEeecCCccceecCCCCCCccceeeecccceeeccc
Q 037249 236 NNSIVGLVPLSLNELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLGLRSFYLDLF 315 (420)
Q Consensus 236 ~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~ 315 (420)
+|++.+..+..+..+..|++|+++.|.++ -+.+..|..+++|++||++.|.+.......-.....+..+. .+++.
T Consensus 326 ~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~-~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lr----kL~l~ 400 (873)
T KOG4194|consen 326 SNRITRLDEGSFRVLSQLEELNLSHNSID-HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLR----KLRLT 400 (873)
T ss_pred ccccccCChhHHHHHHHhhhhcccccchH-HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhh----heeec
Confidence 99999998889999999999999999987 45555889999999999999998865544333333333333 68888
Q ss_pred cCccccccccc--ccCCccEEEccCCccccCCcccccccccccEEeccC
Q 037249 316 NNSFSGSISHF--CYQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHK 362 (420)
Q Consensus 316 ~~~~~~~~~~~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 362 (420)
+|++..+.... .+++|++|||.+|.+-..-+++|..+ .|++|.+..
T Consensus 401 gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 401 GNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred CceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence 99988776543 78999999999999988889999999 999998863
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.96 E-value=6.4e-33 Score=239.14 Aligned_cols=387 Identities=28% Similarity=0.373 Sum_probs=301.5
Q ss_pred CCCCccCCCCCCcEEecccCCCCCCCchhhhhccccCceeecCCCcccCCCCCCCCCCCCccEEEeeccccccccccccc
Q 037249 5 KVNPSLLDLNHLSYLGLSFNDFQGVQIPRFIGSIRNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENFLWLS 84 (420)
Q Consensus 5 ~l~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 84 (420)
.+.+++.++..+.+|++.+|... .+|.+++++..++.++.+.|++. .+|+.+..+..++.++.+.|.+...... ++
T Consensus 59 ~l~~dl~nL~~l~vl~~~~n~l~--~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~el~~~-i~ 134 (565)
T KOG0472|consen 59 VLREDLKNLACLTVLNVHDNKLS--QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELKELPDS-IG 134 (565)
T ss_pred hccHhhhcccceeEEEeccchhh--hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccccceeecCch-HH
Confidence 36678889999999999999877 78889999999999999999986 7888899999999999999987655443 67
Q ss_pred CCCcccEEEcccccCCCccchhhhhCCCCCCcEEEccCCCCCCCCchhhccCCCCCEEEccCCcCCCCCCCCCCCCChhh
Q 037249 85 GLSFLEQLDLCYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSWL 164 (420)
Q Consensus 85 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l 164 (420)
.+..++.++..+|++...++ .+..+.++..+++.++++...++..+. ++.|++++...|.++. +|..+
T Consensus 135 ~~~~l~dl~~~~N~i~slp~---~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~t--------lP~~l 202 (565)
T KOG0472|consen 135 RLLDLEDLDATNNQISSLPE---DMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLET--------LPPEL 202 (565)
T ss_pred HHhhhhhhhccccccccCch---HHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhhc--------CChhh
Confidence 78889999999999988765 556788888899999999988886665 9999999999888854 89999
Q ss_pred hhccccccccccCCCCccccccccccCCcEEeeccCcc-----------cceeEEEeecCcccccchhhhhcCCCCCEEE
Q 037249 165 YRLTHFEQLSVADRPRRIPRSMASLCNLRTIYLSGCVS-----------KELEILVLQSSSISGHLTEQIGHFKNLDTLD 233 (420)
Q Consensus 165 ~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~-----------~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 233 (420)
+.+.+|+.|.+..+.-.+.+.|.+|..|++|+++.+.+ ..+..||+++|.+. ..|+.+..+++|++||
T Consensus 203 g~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLD 281 (565)
T KOG0472|consen 203 GGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLD 281 (565)
T ss_pred cchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhc
Confidence 99999999999999855444899999999999998865 67889999999998 5788888999999999
Q ss_pred CCCcccccCCccchhhccCCcEeecCCccccCccchh-----------------------------------------hh
Q 037249 234 LGNNSIVGLVPLSLNELSKLRILHLPDNKLNGTLFEI-----------------------------------------HF 272 (420)
Q Consensus 234 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~-----------------------------------------~~ 272 (420)
+++|.++.. |..++++ .|+.|-+.||++. .+... ..
T Consensus 282 lSNN~is~L-p~sLgnl-hL~~L~leGNPlr-TiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~ 358 (565)
T KOG0472|consen 282 LSNNDISSL-PYSLGNL-HLKFLALEGNPLR-TIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDI 358 (565)
T ss_pred ccCCccccC-Ccccccc-eeeehhhcCCchH-HHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccch
Confidence 999999976 7788988 9999999999864 11110 01
Q ss_pred cccCccceEeecCCccceecCCCCCCcc--ceeeecccce-----------------eeccccCccccccccc--ccCCc
Q 037249 273 VNLTKLSVSSVNENNLTLKVNHDWVPPF--QLVQLGLRSF-----------------YLDLFNNSFSGSISHF--CYQNL 331 (420)
Q Consensus 273 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~--~~~~l~~~~~-----------------~l~l~~~~~~~~~~~~--~~~~L 331 (420)
....+.+.|++++-+++.+++..|.... -+..+.++.+ .+.++.|.+. +++.. .+++|
T Consensus 359 ~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kL 437 (565)
T KOG0472|consen 359 YAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKL 437 (565)
T ss_pred hhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcc
Confidence 1223556666666666655544443322 2333333333 2233333322 33322 56899
Q ss_pred cEEEccCCccccCCcccccccccccEEeccCCccc-----------------------cccCccccccCCCceEeCCCcc
Q 037249 332 MLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFS-----------------------GTIPISLKNCTALMILDVGENE 388 (420)
Q Consensus 332 ~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~-----------------------~~~~~~l~~l~~L~~L~l~~n~ 388 (420)
+.|++++|-+. .+|..++.+-.||.|+++.|++. ...+..+..+..|.+||+.+|.
T Consensus 438 t~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNd 516 (565)
T KOG0472|consen 438 TFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNND 516 (565)
T ss_pred eeeecccchhh-hcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCc
Confidence 99999999887 78888888888999999988776 1223346678899999999999
Q ss_pred cccccchhhhhcCCCceEEEeeccccc
Q 037249 389 FVGNISTWFGERFSRVVVLILRSNQFR 415 (420)
Q Consensus 389 ~~~~~~~~l~~~~~~L~~L~l~~~~~~ 415 (420)
+. .+|..+++ |.+|++|.++||+|.
T Consensus 517 lq-~IPp~Lgn-mtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 517 LQ-QIPPILGN-MTNLRHLELDGNPFR 541 (565)
T ss_pred hh-hCChhhcc-ccceeEEEecCCccC
Confidence 96 78888886 999999999999997
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=1.9e-30 Score=235.81 Aligned_cols=337 Identities=24% Similarity=0.344 Sum_probs=190.0
Q ss_pred CCCCccCCCCCCcEEecccCCCCCCCchhhhhccccCceeecCCCcccCCCCCCCCCCCCccEEEeecccccccc-cccc
Q 037249 5 KVNPSLLDLNHLSYLGLSFNDFQGVQIPRFIGSIRNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVEN-FLWL 83 (420)
Q Consensus 5 ~l~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~ 83 (420)
..|.+...|+.+++|.+....+. .+|+.++++.+|++|.++.|++. .+...++.++.|+.+.+..|.+...+ +..+
T Consensus 23 ~FP~~v~qMt~~~WLkLnrt~L~--~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~di 99 (1255)
T KOG0444|consen 23 RFPHDVEQMTQMTWLKLNRTKLE--QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDI 99 (1255)
T ss_pred cCchhHHHhhheeEEEechhhhh--hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchh
Confidence 35666666666666666655554 46666666666666666666654 33334555666666666665533221 2234
Q ss_pred cCCCcccEEEcccccCCCccchhhhhCCCCCCcEEEccCCCCCCCCchhhccCCCCCEEEccCCcCCCCCCCCCCCCChh
Q 037249 84 SGLSFLEQLDLCYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSW 163 (420)
Q Consensus 84 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 163 (420)
.++..|..|++++|.+...+. .+..-+++-.|++++|++..++...+.++..|-.|++++|++.. +|..
T Consensus 100 F~l~dLt~lDLShNqL~EvP~---~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~--------LPPQ 168 (1255)
T KOG0444|consen 100 FRLKDLTILDLSHNQLREVPT---NLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEM--------LPPQ 168 (1255)
T ss_pred cccccceeeecchhhhhhcch---hhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhh--------cCHH
Confidence 455666666666666655543 44455666666666666666666566666666666666666633 6666
Q ss_pred hhhccccccccccCCC--CccccccccccCCcEEeeccCcc------------cceeEEEeecCcccccchhhhhcCCCC
Q 037249 164 LYRLTHFEQLSVADRP--RRIPRSMASLCNLRTIYLSGCVS------------KELEILVLQSSSISGHLTEQIGHFKNL 229 (420)
Q Consensus 164 l~~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~l~~~~~------------~~l~~L~l~~~~~~~~~~~~l~~~~~L 229 (420)
+.++..|+.|.+++++ ..-...+.++++|+.|.+++.+- .++..++++.|++. .+|+.+-++++|
T Consensus 169 ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~L 247 (1255)
T KOG0444|consen 169 IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNL 247 (1255)
T ss_pred HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhh
Confidence 6666666666666665 22222333444455555554321 23333334444333 344444455555
Q ss_pred CEEECCCcccccCCccchhhccCCcEeecCCccccCccchhhhcccCccceEeecCCccceecCCCCCCccceeeecccc
Q 037249 230 DTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLGLRS 309 (420)
Q Consensus 230 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 309 (420)
+.|+|++|+++.. ....+...+|++|+++.|+++ .+|. .+..++.|+.|...+|++..
T Consensus 248 rrLNLS~N~iteL-~~~~~~W~~lEtLNlSrNQLt-~LP~-avcKL~kL~kLy~n~NkL~F------------------- 305 (1255)
T KOG0444|consen 248 RRLNLSGNKITEL-NMTEGEWENLETLNLSRNQLT-VLPD-AVCKLTKLTKLYANNNKLTF------------------- 305 (1255)
T ss_pred heeccCcCceeee-eccHHHHhhhhhhccccchhc-cchH-HHhhhHHHHHHHhccCcccc-------------------
Confidence 5555555555443 223344445555555555554 3333 34445555555444444432
Q ss_pred eeeccccCccccccccc-ccCCccEEEccCCccccCCcccccccccccEEeccCCccccccCccccccCCCceEeCCCcc
Q 037249 310 FYLDLFNNSFSGSISHF-CYQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVGENE 388 (420)
Q Consensus 310 ~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 388 (420)
.|.++.. .+.+|+.+..++|.+. ..|+.+..|..|++|.++.|++. .+|++|.-++.|+.||+..|+
T Consensus 306 ----------eGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 306 ----------EGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred ----------cCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCc
Confidence 1222111 2346777777777776 67777777778888888877777 777777777788888887776
Q ss_pred cc
Q 037249 389 FV 390 (420)
Q Consensus 389 ~~ 390 (420)
-.
T Consensus 374 nL 375 (1255)
T KOG0444|consen 374 NL 375 (1255)
T ss_pred Cc
Confidence 54
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=1.3e-30 Score=236.85 Aligned_cols=367 Identities=25% Similarity=0.326 Sum_probs=280.4
Q ss_pred CCCCCCcEEecccCCCCCCCchhhhhccccCceeecCCCcccCCCCCCCCCCCCccEEEeecccccccccccccCCCccc
Q 037249 11 LDLNHLSYLGLSFNDFQGVQIPRFIGSIRNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENFLWLSGLSFLE 90 (420)
Q Consensus 11 ~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 90 (420)
+-++-.+-+|+++|.+++..+|.....+.+++.|.+...++. .+|+.++.+.+|++|.+.+|++...- ..+..++.|+
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~vh-GELs~Lp~LR 81 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLISVH-GELSDLPRLR 81 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHhhh-hhhccchhhH
Confidence 446778899999999998889999999999999999999986 89999999999999999999975543 3478899999
Q ss_pred EEEcccccCCCccchhhhhCCCCCCcEEEccCCCCCCCCchhhccCCCCCEEEccCCcCCCCCCCCCCCCCh-hhhhccc
Q 037249 91 QLDLCYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPS-WLYRLTH 169 (420)
Q Consensus 91 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~l~~~~~ 169 (420)
.+.+.+|++.... ++..+-.+..|..|++++|++..++. .+...+++-.|++++|.+.+ +|. .+.++..
T Consensus 82 sv~~R~N~LKnsG-iP~diF~l~dLt~lDLShNqL~EvP~-~LE~AKn~iVLNLS~N~Iet--------IPn~lfinLtD 151 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSG-IPTDIFRLKDLTILDLSHNQLREVPT-NLEYAKNSIVLNLSYNNIET--------IPNSLFINLTD 151 (1255)
T ss_pred HHhhhccccccCC-CCchhcccccceeeecchhhhhhcch-hhhhhcCcEEEEcccCcccc--------CCchHHHhhHh
Confidence 9999999887653 23345578999999999999998865 67888999999999999965 555 4557889
Q ss_pred cccccccCCC-CccccccccccCCcEEeeccCcccceeEEEeecCcccccchhhhhcCCCCCEEECCCccc-ccCCccch
Q 037249 170 FEQLSVADRP-RRIPRSMASLCNLRTIYLSGCVSKELEILVLQSSSISGHLTEQIGHFKNLDTLDLGNNSI-VGLVPLSL 247 (420)
Q Consensus 170 L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~~~~~~~ 247 (420)
|-.|+++++. ..+|+.+..+.+|++|.+++|.+.. .-...+..+.+|+.|.+++.+- .+-+|..+
T Consensus 152 LLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~h-------------fQLrQLPsmtsL~vLhms~TqRTl~N~Ptsl 218 (1255)
T KOG0444|consen 152 LLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNH-------------FQLRQLPSMTSLSVLHMSNTQRTLDNIPTSL 218 (1255)
T ss_pred HhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhH-------------HHHhcCccchhhhhhhcccccchhhcCCCch
Confidence 9999999998 8899999999999999999986521 1112233344555555555332 22335556
Q ss_pred hhccCCcEeecCCccccCccchhhhcccCccceEeecCCccceecCCCCCCccceeeecccceeeccccCccccccccc-
Q 037249 248 NELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLGLRSFYLDLFNNSFSGSISHF- 326 (420)
Q Consensus 248 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~- 326 (420)
..+.+|..++++.|.+. ..|. .+-.+++|+.|++++|.++......- ..+.+. .+++|.|+++..+...
T Consensus 219 d~l~NL~dvDlS~N~Lp-~vPe-cly~l~~LrrLNLS~N~iteL~~~~~----~W~~lE----tLNlSrNQLt~LP~avc 288 (1255)
T KOG0444|consen 219 DDLHNLRDVDLSENNLP-IVPE-CLYKLRNLRRLNLSGNKITELNMTEG----EWENLE----TLNLSRNQLTVLPDAVC 288 (1255)
T ss_pred hhhhhhhhccccccCCC-cchH-HHhhhhhhheeccCcCceeeeeccHH----HHhhhh----hhccccchhccchHHHh
Confidence 66666666666666655 4444 44556666666666666554221100 011111 4566666666555443
Q ss_pred ccCCccEEEccCCccc-cCCcccccccccccEEeccCCccccccCccccccCCCceEeCCCcccccccchhhhhcCCCce
Q 037249 327 CYQNLMLLTLSNNKFT-GNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVGENEFVGNISTWFGERFSRVV 405 (420)
Q Consensus 327 ~~~~L~~L~l~~~~l~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~~L~ 405 (420)
.+++|+.|...+|+++ +-+|..++.+.+|+++..++|.+. ..|+.+..|++|+.|.++.|++. ..|+.+.- ++.|+
T Consensus 289 KL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHl-L~~l~ 365 (1255)
T KOG0444|consen 289 KLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHL-LPDLK 365 (1255)
T ss_pred hhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhh-cCCcc
Confidence 5688999999999987 357888999999999999999998 89999999999999999999987 78998886 99999
Q ss_pred EEEeeccccc
Q 037249 406 VLILRSNQFR 415 (420)
Q Consensus 406 ~L~l~~~~~~ 415 (420)
.|+++.|+-.
T Consensus 366 vLDlreNpnL 375 (1255)
T KOG0444|consen 366 VLDLRENPNL 375 (1255)
T ss_pred eeeccCCcCc
Confidence 9999999754
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.94 E-value=4.8e-30 Score=221.49 Aligned_cols=361 Identities=25% Similarity=0.279 Sum_probs=242.2
Q ss_pred CCCccCCCCCCcEEecccCCCCCCCchhhhhccccCceeecCCCcccCCCCCCCCCCCCccEEEeecccccccccccccC
Q 037249 6 VNPSLLDLNHLSYLGLSFNDFQGVQIPRFIGSIRNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENFLWLSG 85 (420)
Q Consensus 6 l~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 85 (420)
+|+.+.++-.+..++-.+|.++ ++|..+..+..+..+++.+|++.. .|...-+++.|++||.-.|-+...+++ ++.
T Consensus 129 l~~~i~~~~~l~dl~~~~N~i~--slp~~~~~~~~l~~l~~~~n~l~~-l~~~~i~m~~L~~ld~~~N~L~tlP~~-lg~ 204 (565)
T KOG0472|consen 129 LPDSIGRLLDLEDLDATNNQIS--SLPEDMVNLSKLSKLDLEGNKLKA-LPENHIAMKRLKHLDCNSNLLETLPPE-LGG 204 (565)
T ss_pred cCchHHHHhhhhhhhccccccc--cCchHHHHHHHHHHhhccccchhh-CCHHHHHHHHHHhcccchhhhhcCChh-hcc
Confidence 3444444444444444444444 344444444444555555554442 222222255555555555554444333 566
Q ss_pred CCcccEEEcccccCCCccchhhhhCCCCCCcEEEccCCCCCCCCchhhccCCCCCEEEccCCcCCCCCCCCCCCCChhhh
Q 037249 86 LSFLEQLDLCYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSWLY 165 (420)
Q Consensus 86 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~ 165 (420)
+.+|+-|++..|++...+ .+.+|..|.++.++.|++..++.+...+++++..|++..|++.+ +|..++
T Consensus 205 l~~L~~LyL~~Nki~~lP----ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke--------~Pde~c 272 (565)
T KOG0472|consen 205 LESLELLYLRRNKIRFLP----EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKE--------VPDEIC 272 (565)
T ss_pred hhhhHHHHhhhcccccCC----CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccccccc--------CchHHH
Confidence 667777777777777666 35677888888888888888877777789999999999999965 899999
Q ss_pred hccccccccccCCC-CccccccccccCCcEEeeccCcc------------------------------------------
Q 037249 166 RLTHFEQLSVADRP-RRIPRSMASLCNLRTIYLSGCVS------------------------------------------ 202 (420)
Q Consensus 166 ~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~~~~~------------------------------------------ 202 (420)
.+.+|++|+++++. ..+|..++++ +|+.|-+.|+.+
T Consensus 273 lLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~ 351 (565)
T KOG0472|consen 273 LLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLP 351 (565)
T ss_pred HhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCC
Confidence 99999999999999 7889999999 899999999866
Q ss_pred ----------cceeEEEeecCcccccchhhhhcCC--CCCEEECCCcccccCCccchhhccCCc-EeecCCccccCccch
Q 037249 203 ----------KELEILVLQSSSISGHLTEQIGHFK--NLDTLDLGNNSIVGLVPLSLNELSKLR-ILHLPDNKLNGTLFE 269 (420)
Q Consensus 203 ----------~~l~~L~l~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~l~~~~~~ 269 (420)
...+.|++++-+++.++.+.|...+ -...++++.|++.+. |..+..+..+. .+.+++|.+. ..+.
T Consensus 352 ~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~el-Pk~L~~lkelvT~l~lsnn~is-fv~~ 429 (565)
T KOG0472|consen 352 SESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCEL-PKRLVELKELVTDLVLSNNKIS-FVPL 429 (565)
T ss_pred CCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhh-hhhhHHHHHHHHHHHhhcCccc-cchH
Confidence 2345566666666655555554332 367788888887765 55555454433 3444444442 3333
Q ss_pred hhhcccCccceEeecCCccceecCCCCCCccceeeecccceeeccccCccccccccc-ccCCccEEEccCCccccCCccc
Q 037249 270 IHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLGLRSFYLDLFNNSFSGSISHF-CYQNLMLLTLSNNKFTGNLPNS 348 (420)
Q Consensus 270 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~ 348 (420)
.+..+++|..|++++|.+.+.+.. +.....++ .++++.|.|...+... ..+.++++-.++|++....+..
T Consensus 430 -~l~~l~kLt~L~L~NN~Ln~LP~e-~~~lv~Lq-------~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~ 500 (565)
T KOG0472|consen 430 -ELSQLQKLTFLDLSNNLLNDLPEE-MGSLVRLQ-------TLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSG 500 (565)
T ss_pred -HHHhhhcceeeecccchhhhcchh-hhhhhhhh-------eecccccccccchHHHhhHHHHHHHHhccccccccChHH
Confidence 677778888888887776654332 22222233 5677777666554433 2356777777889998666666
Q ss_pred ccccccccEEeccCCccccccCccccccCCCceEeCCCcccccccchh
Q 037249 349 LGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVGENEFVGNISTW 396 (420)
Q Consensus 349 ~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 396 (420)
+.++.+|..||+.+|.+. .+|..++++.+|+.|+++||+|. ..+..
T Consensus 501 l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr-~Pr~~ 546 (565)
T KOG0472|consen 501 LKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR-QPRHQ 546 (565)
T ss_pred hhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC-CCHHH
Confidence 899999999999999998 88889999999999999999996 44433
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.93 E-value=1e-28 Score=233.67 Aligned_cols=374 Identities=26% Similarity=0.291 Sum_probs=231.7
Q ss_pred CCCCcEEecccCCCCCCCchhhhhccccCceeecCCCcccCCCCCCCCCCCCccEEEeecccccccccccccCCCcccEE
Q 037249 13 LNHLSYLGLSFNDFQGVQIPRFIGSIRNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENFLWLSGLSFLEQL 92 (420)
Q Consensus 13 ~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 92 (420)
.-+|+.||+++|.+. .+|..+..+++|+.|+++.|.+. .+|.+..++.+|++++|.+|.+...+. .+..+.+|+.|
T Consensus 44 ~v~L~~l~lsnn~~~--~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~~lP~-~~~~lknl~~L 119 (1081)
T KOG0618|consen 44 RVKLKSLDLSNNQIS--SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQSLPA-SISELKNLQYL 119 (1081)
T ss_pred eeeeEEeeccccccc--cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhhcCch-hHHhhhccccc
Confidence 334777777777666 56666777777777777777766 566667777777777777777654433 25667777777
Q ss_pred EcccccCCCccchhhhhCCCCCCcEEEccC-------------------CCCCCCCchhhccCCCCCEEEccCCcCCCCC
Q 037249 93 DLCYVNLSKASDWLLVANTLPSLVELRLSN-------------------CQLHHLPPLTISNFSSLTVLDLSFSQFDNSL 153 (420)
Q Consensus 93 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-------------------~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 153 (420)
++++|.+...+.. +..+..+..+..++ +.+.+.....+..+.+ .+++.+|.+..
T Consensus 120 dlS~N~f~~~Pl~---i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~-- 192 (1081)
T KOG0618|consen 120 DLSFNHFGPIPLV---IEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEV-- 192 (1081)
T ss_pred ccchhccCCCchh---HHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhh--
Confidence 7777777666542 22222233333332 2222222212222222 35555555421
Q ss_pred CCCCCCCChhhhhccccccccccCCCCccccccccccCCcEEeeccCcc---------cceeEEEeecCcccccchhhhh
Q 037249 154 IPGWGPIPSWLYRLTHFEQLSVADRPRRIPRSMASLCNLRTIYLSGCVS---------KELEILVLQSSSISGHLTEQIG 224 (420)
Q Consensus 154 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~---------~~l~~L~l~~~~~~~~~~~~l~ 224 (420)
..+..+.+|+.+....+. +....-..++++.|+...|.+ ..++.++++++.+++. |++++
T Consensus 193 --------~dls~~~~l~~l~c~rn~--ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~l-p~wi~ 261 (1081)
T KOG0618|consen 193 --------LDLSNLANLEVLHCERNQ--LSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNL-PEWIG 261 (1081)
T ss_pred --------hhhhhccchhhhhhhhcc--cceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcc-hHHHH
Confidence 223334444444433332 011111334566666666654 5678888888888854 48899
Q ss_pred cCCCCCEEECCCcccccCCccchhhccCCcEeecCCccccCccchhhhcccCccceEeecCCccceecCCCCCCccc-ee
Q 037249 225 HFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQ-LV 303 (420)
Q Consensus 225 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~-~~ 303 (420)
.+.+|+.++..+|.+... |..+....+|+.|.+..|.+....+ .....++|++|++..|++...++..+..... +.
T Consensus 262 ~~~nle~l~~n~N~l~~l-p~ri~~~~~L~~l~~~~nel~yip~--~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~ 338 (1081)
T KOG0618|consen 262 ACANLEALNANHNRLVAL-PLRISRITSLVSLSAAYNELEYIPP--FLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLN 338 (1081)
T ss_pred hcccceEecccchhHHhh-HHHHhhhhhHHHHHhhhhhhhhCCC--cccccceeeeeeehhccccccchHHHhhhhHHHH
Confidence 999999999999988654 6666667778888888887763333 3556788888888888877655433322221 11
Q ss_pred eecccce-----------------eeccccCccccc-cccc-ccCCccEEEccCCccccCCcccccccccccEEeccCCc
Q 037249 304 QLGLRSF-----------------YLDLFNNSFSGS-ISHF-CYQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNI 364 (420)
Q Consensus 304 ~l~~~~~-----------------~l~l~~~~~~~~-~~~~-~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~ 364 (420)
.+....+ .+.+.+|.++.. +|.. ++.+|+.|+|++|++......++.+++.|++|++|||.
T Consensus 339 ~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNk 418 (1081)
T KOG0618|consen 339 TLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNK 418 (1081)
T ss_pred HHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccch
Confidence 1111111 567778887753 3333 78999999999999985555678899999999999999
Q ss_pred cccccCccccccCCCceEeCCCcccccccchhhhhcCCCceEEEeeccccc
Q 037249 365 FSGTIPISLKNCTALMILDVGENEFVGNISTWFGERFSRVVVLILRSNQFR 415 (420)
Q Consensus 365 ~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~~L~~L~l~~~~~~ 415 (420)
++ .+|+.+..++.|++|...+|.+. ..| .+++ ++.|+.+|++.|.++
T Consensus 419 L~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~-l~qL~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 419 LT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQ-LPQLKVLDLSCNNLS 465 (1081)
T ss_pred hh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhh-cCcceEEecccchhh
Confidence 88 66666666666666666666664 344 4444 666666666666554
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.92 E-value=3.5e-27 Score=223.45 Aligned_cols=360 Identities=26% Similarity=0.336 Sum_probs=212.3
Q ss_pred CCCCCccCCCCCCcEEecccCCCCCCCchhhhhccccCceeecCCCcccCCCCCCCCCCCCccEEEeeccccccccc---
Q 037249 4 GKVNPSLLDLNHLSYLGLSFNDFQGVQIPRFIGSIRNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENF--- 80 (420)
Q Consensus 4 ~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--- 80 (420)
+..|..+..+.+|+.|+++.|.|. ..|..+.++.+|+++.+.+|... ..|..+..+.+|++|+++.|++...+.
T Consensus 58 ~~fp~~it~l~~L~~ln~s~n~i~--~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~ 134 (1081)
T KOG0618|consen 58 SSFPIQITLLSHLRQLNLSRNYIR--SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFGPIPLVIE 134 (1081)
T ss_pred ccCCchhhhHHHHhhcccchhhHh--hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccCCCchhHH
Confidence 456666777777777777777666 45566666777777777666655 566666777777777777665433221
Q ss_pred ------------------------------------ccccCCCcccE-EEcccccCCCccchhhhhCCCCCCcEEEccCC
Q 037249 81 ------------------------------------LWLSGLSFLEQ-LDLCYVNLSKASDWLLVANTLPSLVELRLSNC 123 (420)
Q Consensus 81 ------------------------------------~~~~~l~~L~~-L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 123 (420)
........+++ +++++|.+... .+..+.+|+.+....+
T Consensus 135 ~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~-----dls~~~~l~~l~c~rn 209 (1081)
T KOG0618|consen 135 VLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVL-----DLSNLANLEVLHCERN 209 (1081)
T ss_pred hhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhh-----hhhhccchhhhhhhhc
Confidence 00011123344 66666665521 2334555555555554
Q ss_pred CCCCCCch------------------hhccCCCCCEEEccCCcCCCCCCCCCCCCChhhhhccccccccccCCC-Ccccc
Q 037249 124 QLHHLPPL------------------TISNFSSLTVLDLSFSQFDNSLIPGWGPIPSWLYRLTHFEQLSVADRP-RRIPR 184 (420)
Q Consensus 124 ~~~~~~~~------------------~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~ 184 (420)
++...... .-....++++++++.+.++. +|+|+..+.+|+.+++..+. ..+|.
T Consensus 210 ~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~--------lp~wi~~~~nle~l~~n~N~l~~lp~ 281 (1081)
T KOG0618|consen 210 QLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSN--------LPEWIGACANLEALNANHNRLVALPL 281 (1081)
T ss_pred ccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhc--------chHHHHhcccceEecccchhHHhhHH
Confidence 44322110 00112345555555555533 55666666666666665555 44555
Q ss_pred ccccccCCcEEeeccCcc----------cceeEEEeecCcccccchhhhhcCCC-CCEEECCCcccccCCccchhhccCC
Q 037249 185 SMASLCNLRTIYLSGCVS----------KELEILVLQSSSISGHLTEQIGHFKN-LDTLDLGNNSIVGLVPLSLNELSKL 253 (420)
Q Consensus 185 ~~~~~~~L~~L~l~~~~~----------~~l~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~L 253 (420)
.+...++|+.+.+.+|++ ..++.|++..|.+.......+..... ++.++.+.+++.......-...+.|
T Consensus 282 ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~L 361 (1081)
T KOG0618|consen 282 RISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAAL 361 (1081)
T ss_pred HHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHH
Confidence 555555555555555533 45556666666655433333333332 5555555555554422222235668
Q ss_pred cEeecCCccccCccchhhhcccCccceEeecCCccceecCCCCCCccceeeecccceeeccccCcccccccccccCCccE
Q 037249 254 RILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLGLRSFYLDLFNNSFSGSISHFCYQNLML 333 (420)
Q Consensus 254 ~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~L~~ 333 (420)
+.|.+.+|.+++.... .+.+.++|++|++++|++...+...+. .++.|++
T Consensus 362 q~LylanN~Ltd~c~p-~l~~~~hLKVLhLsyNrL~~fpas~~~-----------------------------kle~Lee 411 (1081)
T KOG0618|consen 362 QELYLANNHLTDSCFP-VLVNFKHLKVLHLSYNRLNSFPASKLR-----------------------------KLEELEE 411 (1081)
T ss_pred HHHHHhcCcccccchh-hhccccceeeeeecccccccCCHHHHh-----------------------------chHHhHH
Confidence 8888888888765544 777888888888888877643333222 2356778
Q ss_pred EEccCCccccCCcccccccccccEEeccCCccccccCccccccCCCceEeCCCcccccccchhhhhcCCCceEEEeeccc
Q 037249 334 LTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVGENEFVGNISTWFGERFSRVVVLILRSNQ 413 (420)
Q Consensus 334 L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~~L~~L~l~~~~ 413 (420)
|++|+|+++ .+|+++..+..|+.|...+|++. ..| .+.++++|+.+|++.|+++......-.. -+.|++|+++||.
T Consensus 412 L~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 412 LNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYLDLSGNT 487 (1081)
T ss_pred Hhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC-CcccceeeccCCc
Confidence 888888887 67777788888888888888877 677 6677788888888888776544333222 2678888888875
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=1.1e-21 Score=205.06 Aligned_cols=276 Identities=22% Similarity=0.229 Sum_probs=143.1
Q ss_pred CcccEEEcccccCCCccchhhhhCCCCCCcEEEccCCC-CCCCCchhhccCCCCCEEEccCCcCCCCCCCCCCCCChhhh
Q 037249 87 SFLEQLDLCYVNLSKASDWLLVANTLPSLVELRLSNCQ-LHHLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSWLY 165 (420)
Q Consensus 87 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~ 165 (420)
.+|+.|++.++.+...+. .+..+++|+.|+++++. +..++ .+..+++|++|++++|... ..++..+.
T Consensus 611 ~~L~~L~L~~s~l~~L~~---~~~~l~~Lk~L~Ls~~~~l~~ip--~ls~l~~Le~L~L~~c~~L-------~~lp~si~ 678 (1153)
T PLN03210 611 ENLVKLQMQGSKLEKLWD---GVHSLTGLRNIDLRGSKNLKEIP--DLSMATNLETLKLSDCSSL-------VELPSSIQ 678 (1153)
T ss_pred cCCcEEECcCcccccccc---ccccCCCCCEEECCCCCCcCcCC--ccccCCcccEEEecCCCCc-------cccchhhh
Confidence 444444444444433322 22344445555554432 22222 2334444555555444221 12344444
Q ss_pred hccccccccccCCC--CccccccccccCCcEEeeccCcc--------cceeEEEeecCcccccchhhhhcCCCCCEEECC
Q 037249 166 RLTHFEQLSVADRP--RRIPRSMASLCNLRTIYLSGCVS--------KELEILVLQSSSISGHLTEQIGHFKNLDTLDLG 235 (420)
Q Consensus 166 ~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~l~~~~~--------~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 235 (420)
.+++|+.|++++|. ..+|..+ .+++|+.|++++|.. .+++.|+++++.+.. +|..+ .+++|+.|.+.
T Consensus 679 ~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~-lP~~~-~l~~L~~L~l~ 755 (1153)
T PLN03210 679 YLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEE-FPSNL-RLENLDELILC 755 (1153)
T ss_pred ccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCcccc-ccccc-ccccccccccc
Confidence 44455555554443 3333333 344555555554421 234455555555442 23222 45666666666
Q ss_pred Cccccc-------CCccchhhccCCcEeecCCccccCccchhhhcccCccceEeecCCccceecCCCCCCccceeeeccc
Q 037249 236 NNSIVG-------LVPLSLNELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLGLR 308 (420)
Q Consensus 236 ~~~~~~-------~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~ 308 (420)
++.... ..+.....+++|+.|++++|.....+|. .+.++++|+.|++++|......+... ....++
T Consensus 756 ~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~-si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~----- 828 (1153)
T PLN03210 756 EMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPS-SIQNLHKLEHLEIENCINLETLPTGI-NLESLE----- 828 (1153)
T ss_pred ccchhhccccccccchhhhhccccchheeCCCCCCccccCh-hhhCCCCCCEEECCCCCCcCeeCCCC-CccccC-----
Confidence 543211 1111222346777777777765556665 56777777777777765433332222 222333
Q ss_pred ceeeccccCcccccccccccCCccEEEccCCccccCCcccccccccccEEeccCCccccccCccccccCCCceEeCCCcc
Q 037249 309 SFYLDLFNNSFSGSISHFCYQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVGENE 388 (420)
Q Consensus 309 ~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 388 (420)
.+++++|.....++.. ..+|++|++++|.++ .+|.++..+++|+.|++++|.-...+|..+..+++|+.+++++|.
T Consensus 829 --~L~Ls~c~~L~~~p~~-~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 829 --SLDLSGCSRLRTFPDI-STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred --EEECCCCCcccccccc-ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 3444444332222221 257888888888877 677777888888888888875444677777778888888888874
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=2.6e-21 Score=202.24 Aligned_cols=328 Identities=17% Similarity=0.155 Sum_probs=222.0
Q ss_pred CccCCCCCCcEEecccCCCCC-----CCchhhhhccc-cCceeecCCCcccCCCCCCCCCCCCccEEEeecccccccccc
Q 037249 8 PSLLDLNHLSYLGLSFNDFQG-----VQIPRFIGSIR-NLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENFL 81 (420)
Q Consensus 8 ~~~~~~~~L~~L~l~~~~i~~-----~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 81 (420)
.+|..|++|+.|.+..+.... ..+|..+..++ +|+.|.+.++.+. .+|..+ ...+|++|+++++.+.... .
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~~L~-~ 628 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLEKLW-D 628 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCccccccc-c
Confidence 468889999999886553211 12555565553 5888888888775 566666 4678888888888765543 2
Q ss_pred cccCCCcccEEEccccc-CCCccchhhhhCCCCCCcEEEccCCCCCCCCchhhccCCCCCEEEccCCcCCCCCCCCCCCC
Q 037249 82 WLSGLSFLEQLDLCYVN-LSKASDWLLVANTLPSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGPI 160 (420)
Q Consensus 82 ~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 160 (420)
.+..+++|+.++++++. +...+ .+..+++|++|++++|......+..+..+++|+.|++++|... ..+
T Consensus 629 ~~~~l~~Lk~L~Ls~~~~l~~ip----~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L-------~~L 697 (1153)
T PLN03210 629 GVHSLTGLRNIDLRGSKNLKEIP----DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENL-------EIL 697 (1153)
T ss_pred ccccCCCCCEEECCCCCCcCcCC----ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCc-------Ccc
Confidence 35678888888888764 33333 2556788888888887544444446778888888888876432 123
Q ss_pred ChhhhhccccccccccCCC--CccccccccccCCcEEeeccCcc---------cceeEEEeecCcc-------cccchhh
Q 037249 161 PSWLYRLTHFEQLSVADRP--RRIPRSMASLCNLRTIYLSGCVS---------KELEILVLQSSSI-------SGHLTEQ 222 (420)
Q Consensus 161 ~~~l~~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~l~~~~~---------~~l~~L~l~~~~~-------~~~~~~~ 222 (420)
+..+ .+++|+.|++++|. ..+|.. ..+|+.|+++++.+ +.+..|.+..+.. ....+..
T Consensus 698 p~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~ 773 (1153)
T PLN03210 698 PTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLM 773 (1153)
T ss_pred CCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhh
Confidence 3333 56778888888775 333322 34677777777764 2334444443221 1111222
Q ss_pred hhcCCCCCEEECCCcccccCCccchhhccCCcEeecCCccccCccchhhhcccCccceEeecCCccceecCCCCCCccce
Q 037249 223 IGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQL 302 (420)
Q Consensus 223 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~ 302 (420)
....++|+.|++++|.....+|..++++++|+.|++++|.....+|.. + ++++|+.|++++|......+... ..+
T Consensus 774 ~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~-~-~L~sL~~L~Ls~c~~L~~~p~~~---~nL 848 (1153)
T PLN03210 774 TMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG-I-NLESLESLDLSGCSRLRTFPDIS---TNI 848 (1153)
T ss_pred hhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCC-C-CccccCEEECCCCCccccccccc---ccc
Confidence 334578999999999877777888999999999999998654466652 2 78999999999986543322211 122
Q ss_pred eeecccceeeccccCccccccccc-ccCCccEEEccCCccccCCcccccccccccEEeccCCcc
Q 037249 303 VQLGLRSFYLDLFNNSFSGSISHF-CYQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIF 365 (420)
Q Consensus 303 ~~l~~~~~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~ 365 (420)
+ .+++++|.+...+... .+++|++|++++|.-...++..+..+++|+.+++++|.-
T Consensus 849 ~-------~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~ 905 (1153)
T PLN03210 849 S-------DLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGA 905 (1153)
T ss_pred C-------EeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcc
Confidence 2 6778888887655433 679999999999764446777788999999999999963
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.84 E-value=1.4e-22 Score=175.11 Aligned_cols=372 Identities=22% Similarity=0.232 Sum_probs=210.3
Q ss_pred CcEEecccCCCCCCCchhhhhccccCceeecCCCcccCCCCCCCCCCCCccEEEeec-ccccccccccccCCCcccEEEc
Q 037249 16 LSYLGLSFNDFQGVQIPRFIGSIRNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSL-NYLYVENFLWLSGLSFLEQLDL 94 (420)
Q Consensus 16 L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l 94 (420)
-..+++..|.|+.. .+..|+.+++||+||++.|.|+.+.|.+|..++.+..|.+-+ |+|+.....+|+++..++.|.+
T Consensus 69 tveirLdqN~I~~i-P~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 69 TVEIRLDQNQISSI-PPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred ceEEEeccCCcccC-ChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 34567777777744 456677788888888888888777777888777777665555 7777777777888888888777
Q ss_pred ccccCCCccchhhhhCCCCCCcEEEccCCCCCCCCchhhccCCCCCEEEccCCcCCCCCCCCCCCCChhhhh-------c
Q 037249 95 CYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSWLYR-------L 167 (420)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~-------~ 167 (420)
.-+++.-.. ...+..++++..|.+.+|.+..+....+..+..++.+.+..|.+..+.--.| ....... .
T Consensus 148 Nan~i~Cir--~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~w--la~~~a~~~ietsga 223 (498)
T KOG4237|consen 148 NANHINCIR--QDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPW--LADDLAMNPIETSGA 223 (498)
T ss_pred Chhhhcchh--HHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccch--hhhHHhhchhhcccc
Confidence 777766553 2356677788888888887777777677777778888777776433222111 1110000 0
Q ss_pred cccccccccCCC--CccccccccccCCcEEeeccCcccceeEEEeecCcc-cccchhhhhcCCCCCEEECCCcccccCCc
Q 037249 168 THFEQLSVADRP--RRIPRSMASLCNLRTIYLSGCVSKELEILVLQSSSI-SGHLTEQIGHFKNLDTLDLGNNSIVGLVP 244 (420)
Q Consensus 168 ~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~l~~L~l~~~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 244 (420)
.-..-..+.+.. ..-+.-+ ...++.+ ..=-.+.|.. ..-...-|.++++|+++++++|+++++-+
T Consensus 224 rc~~p~rl~~~Ri~q~~a~kf--~c~~esl----------~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~ 291 (498)
T KOG4237|consen 224 RCVSPYRLYYKRINQEDARKF--LCSLESL----------PSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIED 291 (498)
T ss_pred eecchHHHHHHHhcccchhhh--hhhHHhH----------HHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhh
Confidence 000000000000 0000000 0000100 0000011111 11223346667777777777777776666
Q ss_pred cchhhccCCcEeecCCccccCccchhhhcccCccceEeecCCccceecCCCCCCccceeeecccceeecc----------
Q 037249 245 LSLNELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLGLRSFYLDL---------- 314 (420)
Q Consensus 245 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l---------- 314 (420)
.+|.+...++.|.+..|++. .+....|.++..|++|++.+|+++...+..|.....+..+.+-.+.+..
T Consensus 292 ~aFe~~a~l~eL~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~W 370 (498)
T KOG4237|consen 292 GAFEGAAELQELYLTRNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEW 370 (498)
T ss_pred hhhcchhhhhhhhcCcchHH-HHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHH
Confidence 67777777777777777765 3444466777777777777777777766666666666544443331100
Q ss_pred -ccCcccccccccccCCccEEEccCCcccc------------------------------------CCcccccccccccE
Q 037249 315 -FNNSFSGSISHFCYQNLMLLTLSNNKFTG------------------------------------NLPNSLGSLTSLVS 357 (420)
Q Consensus 315 -~~~~~~~~~~~~~~~~L~~L~l~~~~l~~------------------------------------~~~~~~~~~~~L~~ 357 (420)
..+..++..+-.....++.+.+++..+.+ .+|..+. ....+
T Consensus 371 lr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP--~d~te 448 (498)
T KOG4237|consen 371 LRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIP--VDVTE 448 (498)
T ss_pred HhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCCC--chhHH
Confidence 01111111221123455566665543321 1111111 22356
Q ss_pred EeccCCccccccCccccccCCCceEeCCCcccccccchhhhhcCCCceEEEeecc
Q 037249 358 LHLHKNIFSGTIPISLKNCTALMILDVGENEFVGNISTWFGERFSRVVVLILRSN 412 (420)
Q Consensus 358 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~~L~~L~l~~~ 412 (420)
|.+.+|.++ .+|.. .+.+| .+|+++|++....-..+. ++.+|.+|.+++|
T Consensus 449 lyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~-n~tql~tlilsyn 498 (498)
T KOG4237|consen 449 LYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFS-NMTQLSTLILSYN 498 (498)
T ss_pred Hhcccchhc-ccCHH--HHhhh-hcccccCceehhhccccc-chhhhheeEEecC
Confidence 777777777 66655 56677 888888888744444444 4888888888775
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.81 E-value=4.1e-19 Score=173.41 Aligned_cols=124 Identities=25% Similarity=0.273 Sum_probs=84.0
Q ss_pred CCCCEEECCCcccccCCccchhhccCCcEeecCCccccCccchhhhcccCccceEeecCCccceecCCCCCCccceeeec
Q 037249 227 KNLDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLG 306 (420)
Q Consensus 227 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~ 306 (420)
.+|+.|++++|++... |.. .++|+.|++++|.++ .+|. ..++|+.|++++|.+....
T Consensus 342 ~~Lq~LdLS~N~Ls~L-P~l---p~~L~~L~Ls~N~L~-~LP~----l~~~L~~LdLs~N~Lt~LP-------------- 398 (788)
T PRK15387 342 SGLQELSVSDNQLASL-PTL---PSELYKLWAYNNRLT-SLPA----LPSGLKELIVSGNRLTSLP-------------- 398 (788)
T ss_pred cccceEecCCCccCCC-CCC---Ccccceehhhccccc-cCcc----cccccceEEecCCcccCCC--------------
Confidence 3577777777777754 322 246777777777766 3442 1235666666666554211
Q ss_pred ccceeeccccCcccccccccccCCccEEEccCCccccCCcccccccccccEEeccCCccccccCccccccCCCceEeCCC
Q 037249 307 LRSFYLDLFNNSFSGSISHFCYQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVGE 386 (420)
Q Consensus 307 ~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 386 (420)
.. ..+|+.|++++|+++ .+|.. ..+|+.|++++|.++ .+|..+..+++|+.|++++
T Consensus 399 -----------------~l--~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~ 454 (788)
T PRK15387 399 -----------------VL--PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEG 454 (788)
T ss_pred -----------------Cc--ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCC
Confidence 10 246888899998888 45543 346788899998888 7888888888999999999
Q ss_pred cccccccchhh
Q 037249 387 NEFVGNISTWF 397 (420)
Q Consensus 387 n~~~~~~~~~l 397 (420)
|++++..+..+
T Consensus 455 N~Ls~~~~~~L 465 (788)
T PRK15387 455 NPLSERTLQAL 465 (788)
T ss_pred CCCCchHHHHH
Confidence 98887777665
No 15
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.76 E-value=2.7e-19 Score=163.22 Aligned_cols=290 Identities=21% Similarity=0.204 Sum_probs=156.6
Q ss_pred EEecccCCCCCCCchhhhhccccCceeecCCCcccCC----CCCCCCCCCCccEEEeecccccccccccccCCCcccEEE
Q 037249 18 YLGLSFNDFQGVQIPRFIGSIRNLRYLNLSDTQFVGM----IPPPLGNLSNLQSLDLSLNYLYVENFLWLSGLSFLEQLD 93 (420)
Q Consensus 18 ~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 93 (420)
.|++..+.+++......+..+.+|++++++++.++.. ++..+...+++++++++++.+.....
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~------------- 68 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPR------------- 68 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcch-------------
Confidence 4677777777666677777788888888888876432 33345566667777776665431000
Q ss_pred cccccCCCccchhhhhCCCCCCcEEEccCCCCCCCCchhhccCC---CCCEEEccCCcCCCCCCCCCCCCChhhhhcccc
Q 037249 94 LCYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPLTISNFS---SLTVLDLSFSQFDNSLIPGWGPIPSWLYRLTHF 170 (420)
Q Consensus 94 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~---~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L 170 (420)
........+..+++|++|++++|.+....+..+..+. +|++|++++|.+.+...
T Consensus 69 -------~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~---------------- 125 (319)
T cd00116 69 -------GLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGL---------------- 125 (319)
T ss_pred -------HHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHH----------------
Confidence 0011122344566777777777766544443343333 37777777776642000
Q ss_pred ccccccCCCCccccccccc-cCCcEEeeccCcccceeEEEeecCcccccchhhhhcCCCCCEEECCCcccccCC----cc
Q 037249 171 EQLSVADRPRRIPRSMASL-CNLRTIYLSGCVSKELEILVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLV----PL 245 (420)
Q Consensus 171 ~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~----~~ 245 (420)
..+...+..+ ++|+.|++++|.+..- ....+...+..++.|++|++++|.+.+.. +.
T Consensus 126 ---------~~l~~~l~~~~~~L~~L~L~~n~l~~~---------~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 187 (319)
T cd00116 126 ---------RLLAKGLKDLPPALEKLVLGRNRLEGA---------SCEALAKALRANRDLKELNLANNGIGDAGIRALAE 187 (319)
T ss_pred ---------HHHHHHHHhCCCCceEEEcCCCcCCch---------HHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHH
Confidence 0011122233 4555555555443210 00123334455566667777666665321 12
Q ss_pred chhhccCCcEeecCCccccCccchh---hhcccCccceEeecCCccceecCCCCCCccceeeecccceeeccccCccccc
Q 037249 246 SLNELSKLRILHLPDNKLNGTLFEI---HFVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLGLRSFYLDLFNNSFSGS 322 (420)
Q Consensus 246 ~~~~~~~L~~L~l~~~~l~~~~~~~---~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~ 322 (420)
.+..+++|++|++++|.+++..... .+..+
T Consensus 188 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~----------------------------------------------- 220 (319)
T cd00116 188 GLKANCNLEVLDLNNNGLTDEGASALAETLASL----------------------------------------------- 220 (319)
T ss_pred HHHhCCCCCEEeccCCccChHHHHHHHHHhccc-----------------------------------------------
Confidence 2333456777777766655322110 12222
Q ss_pred ccccccCCccEEEccCCccccCCccccc-----ccccccEEeccCCcccc----ccCccccccCCCceEeCCCccccccc
Q 037249 323 ISHFCYQNLMLLTLSNNKFTGNLPNSLG-----SLTSLVSLHLHKNIFSG----TIPISLKNCTALMILDVGENEFVGNI 393 (420)
Q Consensus 323 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~-----~~~~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~l~~n~~~~~~ 393 (420)
++|++|++++|.+++.....+. ..+.|++|++++|.++. .+.+.+..+++|+++++++|++++..
T Consensus 221 ------~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~ 294 (319)
T cd00116 221 ------KSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEG 294 (319)
T ss_pred ------CCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHH
Confidence 4566666666655532221111 23677777777777652 23344556678888888888887664
Q ss_pred chhhhh---cC-CCceEEEeecccc
Q 037249 394 STWFGE---RF-SRVVVLILRSNQF 414 (420)
Q Consensus 394 ~~~l~~---~~-~~L~~L~l~~~~~ 414 (420)
...+++ .. +.|+.+++.++++
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 295 AQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHHHHHhhcCCchhhcccCCCCC
Confidence 444332 23 5788888888765
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.76 E-value=1.1e-17 Score=163.40 Aligned_cols=265 Identities=23% Similarity=0.228 Sum_probs=191.7
Q ss_pred CCCcEEecccCCCCCCCchhhhhccccCceeecCCCcccCCCCCCCCCCCCccEEEeecccccccccccccCCCcccEEE
Q 037249 14 NHLSYLGLSFNDFQGVQIPRFIGSIRNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENFLWLSGLSFLEQLD 93 (420)
Q Consensus 14 ~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 93 (420)
..-..|+++.+.++ .+|..+. ++|+.|++++|+++ .+|. ..++|++|++++|++...+. ..++|+.|+
T Consensus 201 ~~~~~LdLs~~~Lt--sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~LtsLP~----lp~sL~~L~ 268 (788)
T PRK15387 201 NGNAVLNVGESGLT--TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSLPV----LPPGLLELS 268 (788)
T ss_pred CCCcEEEcCCCCCC--cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccCcccC----cccccceee
Confidence 34567999999887 5777665 58999999999988 4664 25789999999999876543 246899999
Q ss_pred cccccCCCccchhhhhCCCCCCcEEEccCCCCCCCCchhhccCCCCCEEEccCCcCCCCCCCCCCCCChhhhhccccccc
Q 037249 94 LCYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSWLYRLTHFEQL 173 (420)
Q Consensus 94 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L 173 (420)
+++|.+...+.. .++|+.|++++|++..++. ..++|+.|++++|.+.. ++.. ...|+.|
T Consensus 269 Ls~N~L~~Lp~l------p~~L~~L~Ls~N~Lt~LP~----~p~~L~~LdLS~N~L~~--------Lp~l---p~~L~~L 327 (788)
T PRK15387 269 IFSNPLTHLPAL------PSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLAS--------LPAL---PSELCKL 327 (788)
T ss_pred ccCCchhhhhhc------hhhcCEEECcCCccccccc----cccccceeECCCCcccc--------CCCC---ccccccc
Confidence 999988776542 3578899999999987764 24789999999998864 3321 2356777
Q ss_pred cccCCC-CccccccccccCCcEEeeccCcccceeEEEeecCcccccchhhhhcCCCCCEEECCCcccccCCccchhhccC
Q 037249 174 SVADRP-RRIPRSMASLCNLRTIYLSGCVSKELEILVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSK 252 (420)
Q Consensus 174 ~l~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 252 (420)
++.+|. ..+|... .+|+.|++++|.+ +. +|.. .++|+.|++++|.+... |.. ..+
T Consensus 328 ~Ls~N~L~~LP~lp---~~Lq~LdLS~N~L-------------s~-LP~l---p~~L~~L~Ls~N~L~~L-P~l---~~~ 383 (788)
T PRK15387 328 WAYNNQLTSLPTLP---SGLQELSVSDNQL-------------AS-LPTL---PSELYKLWAYNNRLTSL-PAL---PSG 383 (788)
T ss_pred ccccCccccccccc---cccceEecCCCcc-------------CC-CCCC---CcccceehhhccccccC-ccc---ccc
Confidence 777766 4444311 3556666655544 32 2221 25688889999998864 432 357
Q ss_pred CcEeecCCccccCccchhhhcccCccceEeecCCccceecCCCCCCccceeeecccceeeccccCcccccccccccCCcc
Q 037249 253 LRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLGLRSFYLDLFNNSFSGSISHFCYQNLM 332 (420)
Q Consensus 253 L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~L~ 332 (420)
|+.|++++|.++ .+|. ..++|+.|++++|.+...+. .+.+|+
T Consensus 384 L~~LdLs~N~Lt-~LP~----l~s~L~~LdLS~N~LssIP~---------------------------------l~~~L~ 425 (788)
T PRK15387 384 LKELIVSGNRLT-SLPV----LPSELKELMVSGNRLTSLPM---------------------------------LPSGLL 425 (788)
T ss_pred cceEEecCCccc-CCCC----cccCCCEEEccCCcCCCCCc---------------------------------chhhhh
Confidence 999999999987 3443 13578888888877653110 024688
Q ss_pred EEEccCCccccCCcccccccccccEEeccCCccccccCcccc
Q 037249 333 LLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIPISLK 374 (420)
Q Consensus 333 ~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~ 374 (420)
.|++++|+++ .+|..+..+++|+.|++++|++.+..+..+.
T Consensus 426 ~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~ 466 (788)
T PRK15387 426 SLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 466 (788)
T ss_pred hhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHH
Confidence 9999999998 7888899999999999999999977666553
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.72 E-value=1.8e-19 Score=156.08 Aligned_cols=283 Identities=20% Similarity=0.140 Sum_probs=146.3
Q ss_pred cEEEeecccccccccccccCCCcccEEEcccccCCCccchhhhhCCCCCCcEEEccC-CCCCCCCchhhccCCCCCEEEc
Q 037249 66 QSLDLSLNYLYVENFLWLSGLSFLEQLDLCYVNLSKASDWLLVANTLPSLVELRLSN-CQLHHLPPLTISNFSSLTVLDL 144 (420)
Q Consensus 66 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l 144 (420)
..++|..|.|..++..+|..+++|+.+++++|.++.+.. ..+.+++++..|-+.+ |+|++++...|..+..++.|.+
T Consensus 70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p--~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAP--DAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred eEEEeccCCcccCChhhccchhhhceecccccchhhcCh--HhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 334444444444444444444444444444444444421 2333444443333322 4444444444444444444444
Q ss_pred cCCcCCCCCCCCCCCCChhhhhccccccccccCCC-Ccccc-ccccccCCcEEeeccCccc---ceeEEEeecCcccccc
Q 037249 145 SFSQFDNSLIPGWGPIPSWLYRLTHFEQLSVADRP-RRIPR-SMASLCNLRTIYLSGCVSK---ELEILVLQSSSISGHL 219 (420)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~-~~~~~~~L~~L~l~~~~~~---~l~~L~l~~~~~~~~~ 219 (420)
.-+++.. .....+..++.+..|.+.++. ..++. .+..+.+++.+.+..+.+- +++++. .+....
T Consensus 148 Nan~i~C-------ir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla----~~~a~~ 216 (498)
T KOG4237|consen 148 NANHINC-------IRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLA----DDLAMN 216 (498)
T ss_pred Chhhhcc-------hhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhh----hHHhhc
Confidence 4444321 122334444444444444443 22332 4555555555555544320 000000 001122
Q ss_pred hhhhhcCCCCCEEECCCcccccCCccchhh-ccCCcEeecCCccccCccchhhhcccCccceEeecCCccceecCCCCCC
Q 037249 220 TEQIGHFKNLDTLDLGNNSIVGLVPLSLNE-LSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLKVNHDWVP 298 (420)
Q Consensus 220 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~ 298 (420)
+..++.+....-..+.+.++..+.+..+.. ..++..=-.+.|...+..|...|..+++|+++++++|.++.+.+..|..
T Consensus 217 ~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~ 296 (498)
T KOG4237|consen 217 PIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEG 296 (498)
T ss_pred hhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcc
Confidence 233334444444445555555443333321 1122211223444555667667888888888888888777555444443
Q ss_pred ccceeeecccceeeccccCcccccccccccCCccEEEccCCccccCCcccccccccccEEeccCCccccccCccccccCC
Q 037249 299 PFQLVQLGLRSFYLDLFNNSFSGSISHFCYQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTA 378 (420)
Q Consensus 299 ~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~ 378 (420)
. ..+++|.+..|++...-...|.++..|+.|++.+|+|+...|.+|..+.+
T Consensus 297 ~-----------------------------a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~ 347 (498)
T KOG4237|consen 297 A-----------------------------AELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFS 347 (498)
T ss_pred h-----------------------------hhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccce
Confidence 2 45777778888877445567788888888888888888777888888888
Q ss_pred CceEeCCCcccc
Q 037249 379 LMILDVGENEFV 390 (420)
Q Consensus 379 L~~L~l~~n~~~ 390 (420)
|.+|++-.|++.
T Consensus 348 l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 348 LSTLNLLSNPFN 359 (498)
T ss_pred eeeeehccCccc
Confidence 888888777653
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.68 E-value=4.1e-16 Score=153.44 Aligned_cols=246 Identities=26% Similarity=0.331 Sum_probs=138.0
Q ss_pred CCcEEEccCCCCCCCCchhhccCCCCCEEEccCCcCCCCCCCCCCCCChhhhhccccccccccCCC-CccccccccccCC
Q 037249 114 SLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSWLYRLTHFEQLSVADRP-RRIPRSMASLCNL 192 (420)
Q Consensus 114 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~L 192 (420)
+...|+++++.++.++.. + .++++.|++++|.++. ++..+. .+|+.|+++++. ..+|..+. ++|
T Consensus 179 ~~~~L~L~~~~LtsLP~~-I--p~~L~~L~Ls~N~Lts--------LP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L 243 (754)
T PRK15370 179 NKTELRLKILGLTTIPAC-I--PEQITTLILDNNELKS--------LPENLQ--GNIKTLYANSNQLTSIPATLP--DTI 243 (754)
T ss_pred CceEEEeCCCCcCcCCcc-c--ccCCcEEEecCCCCCc--------CChhhc--cCCCEEECCCCccccCChhhh--ccc
Confidence 445566666665555431 2 2456666666666543 333222 355566555554 33343221 245
Q ss_pred cEEeeccCcccceeEEEeecCcccccchhhhhcCCCCCEEECCCcccccCCccchhhccCCcEeecCCccccCccchhhh
Q 037249 193 RTIYLSGCVSKELEILVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNGTLFEIHF 272 (420)
Q Consensus 193 ~~L~l~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~ 272 (420)
+.|++++|.+ . .+|..+. .+|+.|++++|.+... |..+. ++|+.|++++|.++ .+|. .+
T Consensus 244 ~~L~Ls~N~L-------------~-~LP~~l~--s~L~~L~Ls~N~L~~L-P~~l~--~sL~~L~Ls~N~Lt-~LP~-~l 302 (754)
T PRK15370 244 QEMELSINRI-------------T-ELPERLP--SALQSLDLFHNKISCL-PENLP--EELRYLSVYDNSIR-TLPA-HL 302 (754)
T ss_pred cEEECcCCcc-------------C-cCChhHh--CCCCEEECcCCccCcc-ccccC--CCCcEEECCCCccc-cCcc-cc
Confidence 5555544433 2 1222222 3566666666666643 33332 46667777766665 2332 11
Q ss_pred cccCccceEeecCCccceecCCCCCCccceeeecccceeeccccCcccccccccccCCccEEEccCCccccCCccccccc
Q 037249 273 VNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLGLRSFYLDLFNNSFSGSISHFCYQNLMLLTLSNNKFTGNLPNSLGSL 352 (420)
Q Consensus 273 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~ 352 (420)
.++|+.|++++|.+........ ..++ .+++++|.+++.. ....++|+.|++++|+++ .+|..+.
T Consensus 303 --p~sL~~L~Ls~N~Lt~LP~~l~---~sL~-------~L~Ls~N~Lt~LP-~~l~~sL~~L~Ls~N~L~-~LP~~lp-- 366 (754)
T PRK15370 303 --PSGITHLNVQSNSLTALPETLP---PGLK-------TLEAGENALTSLP-ASLPPELQVLDVSKNQIT-VLPETLP-- 366 (754)
T ss_pred --hhhHHHHHhcCCccccCCcccc---ccce-------eccccCCccccCC-hhhcCcccEEECCCCCCC-cCChhhc--
Confidence 1356666666666653321111 1222 4555566655532 222367888888888887 4565543
Q ss_pred ccccEEeccCCccccccCccccccCCCceEeCCCcccccccchhhhh---cCCCceEEEeeccccc
Q 037249 353 TSLVSLHLHKNIFSGTIPISLKNCTALMILDVGENEFVGNISTWFGE---RFSRVVVLILRSNQFR 415 (420)
Q Consensus 353 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~---~~~~L~~L~l~~~~~~ 415 (420)
++|+.|+|++|.+. .+|..+. ++|+.|++++|++. .+|..+.. .++.+..|++.+|+++
T Consensus 367 ~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 367 PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 68888888888888 6666654 36888888888886 55554332 2577888888888875
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.66 E-value=1.7e-17 Score=151.28 Aligned_cols=266 Identities=22% Similarity=0.158 Sum_probs=181.3
Q ss_pred CCCccCCCCCCcEEecccCCCCCC---CchhhhhccccCceeecCCCcccC------CCCCCCCCCCCccEEEeeccccc
Q 037249 6 VNPSLLDLNHLSYLGLSFNDFQGV---QIPRFIGSIRNLRYLNLSDTQFVG------MIPPPLGNLSNLQSLDLSLNYLY 76 (420)
Q Consensus 6 l~~~~~~~~~L~~L~l~~~~i~~~---~~~~~~~~l~~L~~L~l~~~~~~~------~~~~~l~~l~~L~~L~l~~~~~~ 76 (420)
.+..+..++.|++|+++++.+++. .++..+...+++++++++++.+.. .++..+.++++|+.|++++|.+.
T Consensus 15 ~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 94 (319)
T cd00116 15 ATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALG 94 (319)
T ss_pred hHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCC
Confidence 344456677799999999988543 244556677889999999987652 13345677899999999999876
Q ss_pred ccccccccCC---CcccEEEcccccCCCc--cchhhhhCCC-CCCcEEEccCCCCCCCCc----hhhccCCCCCEEEccC
Q 037249 77 VENFLWLSGL---SFLEQLDLCYVNLSKA--SDWLLVANTL-PSLVELRLSNCQLHHLPP----LTISNFSSLTVLDLSF 146 (420)
Q Consensus 77 ~~~~~~~~~l---~~L~~L~l~~~~~~~~--~~~~~~~~~~-~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~ 146 (420)
......+..+ ++|++|++++|++... ......+..+ ++|+.|++++|.++.... ..+..+++|++|++++
T Consensus 95 ~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~ 174 (319)
T cd00116 95 PDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLAN 174 (319)
T ss_pred hhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcC
Confidence 5444444444 4599999999988743 1223345566 899999999999874322 2456678999999999
Q ss_pred CcCCCCCCCCCCCCChhhhhccccccccccCCC------CccccccccccCCcEEeeccCcccceeEEEeecCcccccch
Q 037249 147 SQFDNSLIPGWGPIPSWLYRLTHFEQLSVADRP------RRIPRSMASLCNLRTIYLSGCVSKELEILVLQSSSISGHLT 220 (420)
Q Consensus 147 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~------~~~~~~~~~~~~L~~L~l~~~~~~~l~~L~l~~~~~~~~~~ 220 (420)
|.+.+... ..++..+..+++|+.|+++++. ..+...+..+++|+.|++++|.+. +...
T Consensus 175 n~l~~~~~---~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~-------------~~~~ 238 (319)
T cd00116 175 NGIGDAGI---RALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT-------------DAGA 238 (319)
T ss_pred CCCchHHH---HHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc-------------hHHH
Confidence 98864211 1233445566789999998876 123445566778888888776543 2111
Q ss_pred hhh-h----cCCCCCEEECCCcccccCC----ccchhhccCCcEeecCCccccCccchh---hhccc-CccceEeecCCc
Q 037249 221 EQI-G----HFKNLDTLDLGNNSIVGLV----PLSLNELSKLRILHLPDNKLNGTLFEI---HFVNL-TKLSVSSVNENN 287 (420)
Q Consensus 221 ~~l-~----~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~l~~~~~~~---~~~~~-~~L~~l~l~~~~ 287 (420)
..+ . ..+.|+.|++++|.+++.. ...+..+++|+.+++++|.+.+..... .+... +.++.+++.++.
T Consensus 239 ~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 239 AALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 111 1 2478999999999987432 234455688999999999988542221 33334 688888887764
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.66 E-value=6.6e-16 Score=151.99 Aligned_cols=120 Identities=27% Similarity=0.353 Sum_probs=63.1
Q ss_pred CCCEEECCCcccccCCccchhhccCCcEeecCCccccCccchhhhcccCccceEeecCCccceecCCCCCCccceeeecc
Q 037249 228 NLDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLGL 307 (420)
Q Consensus 228 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~ 307 (420)
+|+.|++++|.+... |..+ .++|+.|++++|.++ .+|. .+ .++|+.|++++|++....
T Consensus 305 sL~~L~Ls~N~Lt~L-P~~l--~~sL~~L~Ls~N~Lt-~LP~-~l--~~sL~~L~Ls~N~L~~LP--------------- 362 (754)
T PRK15370 305 GITHLNVQSNSLTAL-PETL--PPGLKTLEAGENALT-SLPA-SL--PPELQVLDVSKNQITVLP--------------- 362 (754)
T ss_pred hHHHHHhcCCccccC-Cccc--cccceeccccCCccc-cCCh-hh--cCcccEEECCCCCCCcCC---------------
Confidence 456666666666543 2222 246666666666665 2433 12 246666666666544211
Q ss_pred cceeeccccCcccccccccccCCccEEEccCCccccCCcccccccccccEEeccCCccccccCcccc----ccCCCceEe
Q 037249 308 RSFYLDLFNNSFSGSISHFCYQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIPISLK----NCTALMILD 383 (420)
Q Consensus 308 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~----~l~~L~~L~ 383 (420)
....++|++|++++|+++ .+|..+. .+|+.|++++|++. .+|+.+. .++.+..++
T Consensus 363 -----------------~~lp~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~ 421 (754)
T PRK15370 363 -----------------ETLPPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRII 421 (754)
T ss_pred -----------------hhhcCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEE
Confidence 001135666666666666 3444333 35666666666665 4444332 235566666
Q ss_pred CCCcccc
Q 037249 384 VGENEFV 390 (420)
Q Consensus 384 l~~n~~~ 390 (420)
+.+|++.
T Consensus 422 L~~Npls 428 (754)
T PRK15370 422 VEYNPFS 428 (754)
T ss_pred eeCCCcc
Confidence 6666654
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.45 E-value=3.5e-15 Score=115.17 Aligned_cols=151 Identities=26% Similarity=0.365 Sum_probs=66.5
Q ss_pred ccCceeecCCCcccCCCCCCCCCCCCccEEEeecccccccccccccCCCcccEEEcccccCCCccchhhhhCCCCCCcEE
Q 037249 39 RNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENFLWLSGLSFLEQLDLCYVNLSKASDWLLVANTLPSLVEL 118 (420)
Q Consensus 39 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 118 (420)
.+++.|.++.|+++ .+|..++.+.+|+.|++++|.+...+.. +..+++|++|+++-|+....+. .++.+|.|+.|
T Consensus 33 s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmnrl~~lpr---gfgs~p~levl 107 (264)
T KOG0617|consen 33 SNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMNRLNILPR---GFGSFPALEVL 107 (264)
T ss_pred hhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhhcChh-hhhchhhhheecchhhhhcCcc---ccCCCchhhhh
Confidence 34444444444444 3333344444444444444444333222 3444444444444444433322 33444444444
Q ss_pred EccCCCCC-CCCchhhccCCCCCEEEccCCcCCCCCCCCCCCCChhhhhccccccccccCCC-CccccccccccCCcEEe
Q 037249 119 RLSNCQLH-HLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSWLYRLTHFEQLSVADRP-RRIPRSMASLCNLRTIY 196 (420)
Q Consensus 119 ~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~ 196 (420)
++.+|.+. ...+..|-.+..|+.|+++.|.++ .+|..++++.+|+.|.+.+++ -.+|..++.+..|++|+
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe--------~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelh 179 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE--------ILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELH 179 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcc--------cCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHh
Confidence 44444432 122233334444444444444442 244444455555555544444 44555555555555555
Q ss_pred eccCcc
Q 037249 197 LSGCVS 202 (420)
Q Consensus 197 l~~~~~ 202 (420)
+.++++
T Consensus 180 iqgnrl 185 (264)
T KOG0617|consen 180 IQGNRL 185 (264)
T ss_pred ccccee
Confidence 555443
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.43 E-value=7.5e-15 Score=113.38 Aligned_cols=175 Identities=31% Similarity=0.434 Sum_probs=119.3
Q ss_pred eEEEeecCcccccchhhhhcCCCCCEEECCCcccccCCccchhhccCCcEeecCCccccCccchhhhcccCccceEeecC
Q 037249 206 EILVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNE 285 (420)
Q Consensus 206 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~ 285 (420)
+.|.+++|.++ .+|-.+..+.+|+.|++.+|++.+. |..++.++.|+.|++.-|.+. ..|. .|+++|-|++||+..
T Consensus 36 TrLtLSHNKl~-~vppnia~l~nlevln~~nnqie~l-p~~issl~klr~lnvgmnrl~-~lpr-gfgs~p~levldlty 111 (264)
T KOG0617|consen 36 TRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIEEL-PTSISSLPKLRILNVGMNRLN-ILPR-GFGSFPALEVLDLTY 111 (264)
T ss_pred hhhhcccCcee-ecCCcHHHhhhhhhhhcccchhhhc-Chhhhhchhhhheecchhhhh-cCcc-ccCCCchhhhhhccc
Confidence 34444445555 3444566677788888888877765 667777778888887777765 4554 677777788777777
Q ss_pred CccceecCCCCCCccceeeecccceeeccccCcccccccccccCCccEEEccCCccccCCcccccccccccEEeccCCcc
Q 037249 286 NNLTLKVNHDWVPPFQLVQLGLRSFYLDLFNNSFSGSISHFCYQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIF 365 (420)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~ 365 (420)
|.+... .+-+|-| .++.|+-|.+++|.+. .+|..++.+++||-|.+.+|.+
T Consensus 112 nnl~e~---------------------~lpgnff-------~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndl 162 (264)
T KOG0617|consen 112 NNLNEN---------------------SLPGNFF-------YMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDL 162 (264)
T ss_pred cccccc---------------------cCCcchh-------HHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCch
Confidence 765521 1111110 2367888888888887 7788888899999999999888
Q ss_pred ccccCccccccCCCceEeCCCcccccccchhhhhcCC---CceEEEeecccccc
Q 037249 366 SGTIPISLKNCTALMILDVGENEFVGNISTWFGERFS---RVVVLILRSNQFRG 416 (420)
Q Consensus 366 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~---~L~~L~l~~~~~~~ 416 (420)
. .+|..++.+..|++|.|.+|+++ .+|..++. +. +=+...+.+|++..
T Consensus 163 l-~lpkeig~lt~lrelhiqgnrl~-vlppel~~-l~l~~~k~v~r~E~NPwv~ 213 (264)
T KOG0617|consen 163 L-SLPKEIGDLTRLRELHIQGNRLT-VLPPELAN-LDLVGNKQVMRMEENPWVN 213 (264)
T ss_pred h-hCcHHHHHHHHHHHHhcccceee-ecChhhhh-hhhhhhHHHHhhhhCCCCC
Confidence 8 88888888899999999999886 66666554 32 22334455555543
No 23
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.36 E-value=7.7e-14 Score=119.81 Aligned_cols=192 Identities=26% Similarity=0.270 Sum_probs=126.5
Q ss_pred CccCCCCCCcEEecccCCCCCC---CchhhhhccccCceeecCCCc---ccCCCCC-------CCCCCCCccEEEeeccc
Q 037249 8 PSLLDLNHLSYLGLSFNDFQGV---QIPRFIGSIRNLRYLNLSDTQ---FVGMIPP-------PLGNLSNLQSLDLSLNY 74 (420)
Q Consensus 8 ~~~~~~~~L~~L~l~~~~i~~~---~~~~~~~~l~~L~~L~l~~~~---~~~~~~~-------~l~~l~~L~~L~l~~~~ 74 (420)
+.+..+..++.+++++|.+... .+.+.+.+-++|+..++++-- ....+|. ++..+++|++|+||.|.
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 3456788899999999988654 123445567888888887642 1122333 34567899999999999
Q ss_pred ccccccccc----cCCCcccEEEcccccCCCccc-----------hhhhhCCCCCCcEEEccCCCCCCCCch----hhcc
Q 037249 75 LYVENFLWL----SGLSFLEQLDLCYVNLSKASD-----------WLLVANTLPSLVELRLSNCQLHHLPPL----TISN 135 (420)
Q Consensus 75 ~~~~~~~~~----~~l~~L~~L~l~~~~~~~~~~-----------~~~~~~~~~~L~~L~l~~~~~~~~~~~----~l~~ 135 (420)
+....+..+ .++..|++|.+.+|.+..... .......-+.|+++...+|++.+.+.. .+..
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~ 183 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQS 183 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHh
Confidence 887766544 678899999999998876532 112345567899999999888766543 4566
Q ss_pred CCCCCEEEccCCcCCCCCCCCCCCCChhhhhccccccccccCCC------CccccccccccCCcEEeeccCcc
Q 037249 136 FSSLTVLDLSFSQFDNSLIPGWGPIPSWLYRLTHFEQLSVADRP------RRIPRSMASLCNLRTIYLSGCVS 202 (420)
Q Consensus 136 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~------~~~~~~~~~~~~L~~L~l~~~~~ 202 (420)
.+.|+.+.+..|.+...++ ..+...+..+++|+.|++.+|. ..+...+..+++|+++.+++|-+
T Consensus 184 ~~~leevr~~qN~I~~eG~---~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll 253 (382)
T KOG1909|consen 184 HPTLEEVRLSQNGIRPEGV---TALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLL 253 (382)
T ss_pred ccccceEEEecccccCchh---HHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccc
Confidence 7888999988888754322 1233455566666666666554 22334444555555555555543
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.33 E-value=7.4e-13 Score=113.86 Aligned_cols=138 Identities=17% Similarity=0.159 Sum_probs=67.6
Q ss_pred CCCCEEECCCcccccCC----ccchhhccCCcEeecCCccccCccc---hhhhcccCccceEeecCCccceecCCCCCCc
Q 037249 227 KNLDTLDLGNNSIVGLV----PLSLNELSKLRILHLPDNKLNGTLF---EIHFVNLTKLSVSSVNENNLTLKVNHDWVPP 299 (420)
Q Consensus 227 ~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~ 299 (420)
+.|+.+....|++.+.. ...++..+.|+.+.++.|.+..+.. ...+..|++|++||+++|.++.........
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak- 235 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK- 235 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH-
Confidence 34555555555544332 2233444556666666555432222 124555666666666666554322110000
Q ss_pred cceeeecccceeeccccCcccccccccccCCccEEEccCCccccCCcc----cc-cccccccEEeccCCcccccc----C
Q 037249 300 FQLVQLGLRSFYLDLFNNSFSGSISHFCYQNLMLLTLSNNKFTGNLPN----SL-GSLTSLVSLHLHKNIFSGTI----P 370 (420)
Q Consensus 300 ~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~----~~-~~~~~L~~L~l~~n~~~~~~----~ 370 (420)
....+++|++|++++|-+...... ++ ...|+|++|.+.+|.++... .
T Consensus 236 ------------------------aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la 291 (382)
T KOG1909|consen 236 ------------------------ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALA 291 (382)
T ss_pred ------------------------HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHH
Confidence 000124566666666666533222 22 23566777777777665322 2
Q ss_pred ccccccCCCceEeCCCccc
Q 037249 371 ISLKNCTALMILDVGENEF 389 (420)
Q Consensus 371 ~~l~~l~~L~~L~l~~n~~ 389 (420)
.++...|.|..|+|++|++
T Consensus 292 ~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 292 ACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHhcchhhHHhcCCcccc
Confidence 2334466777777777766
No 25
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=2e-12 Score=114.39 Aligned_cols=92 Identities=20% Similarity=0.199 Sum_probs=65.5
Q ss_pred ccccccCCcEEeeccCcccceeEEEeecCcccccchhhhhcCCCCCEEECCCcccccCCcc-chhhccCCcEeecCCccc
Q 037249 185 SMASLCNLRTIYLSGCVSKELEILVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPL-SLNELSKLRILHLPDNKL 263 (420)
Q Consensus 185 ~~~~~~~L~~L~l~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~l 263 (420)
....|++++.|+++++-+.+.. .+......+|+|+.|+++.|++.-.... ....++.|+.|.++.|.+
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw~-----------~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGl 209 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNWF-----------PVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGL 209 (505)
T ss_pred hhhhCCcceeecchhhhHHhHH-----------HHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCC
Confidence 5567788888888776543322 4456667889999999999987643211 223568899999999998
Q ss_pred cCccchhhhcccCccceEeecCCc
Q 037249 264 NGTLFEIHFVNLTKLSVSSVNENN 287 (420)
Q Consensus 264 ~~~~~~~~~~~~~~L~~l~l~~~~ 287 (420)
+-.-.......+|+|+.|.+..|.
T Consensus 210 s~k~V~~~~~~fPsl~~L~L~~N~ 233 (505)
T KOG3207|consen 210 SWKDVQWILLTFPSLEVLYLEANE 233 (505)
T ss_pred CHHHHHHHHHhCCcHHHhhhhccc
Confidence 743333356688999999998885
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=2.5e-12 Score=113.74 Aligned_cols=112 Identities=23% Similarity=0.194 Sum_probs=58.0
Q ss_pred CCCCccEEEeeccccccccc-ccccCCCcccEEEcccccCCCccchhhhhCCCCCCcEEEccCCCCCCCCch-hhccCCC
Q 037249 61 NLSNLQSLDLSLNYLYVENF-LWLSGLSFLEQLDLCYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPL-TISNFSS 138 (420)
Q Consensus 61 ~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~ 138 (420)
++.+|+.+.+.++.+...+. .....|++++.|+++.|-+..+..+......+|+|+.|+++.|++...... .-..+++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 34555555555555433332 234455666666666665555555555555666666666666655422211 1134556
Q ss_pred CCEEEccCCcCCCCCCCCCCCCChhhhhccccccccccCC
Q 037249 139 LTVLDLSFSQFDNSLIPGWGPIPSWLYRLTHFEQLSVADR 178 (420)
Q Consensus 139 L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 178 (420)
|+.|.+++|.++. ..+...+..+|+++.|.+..+
T Consensus 199 lK~L~l~~CGls~------k~V~~~~~~fPsl~~L~L~~N 232 (505)
T KOG3207|consen 199 LKQLVLNSCGLSW------KDVQWILLTFPSLEVLYLEAN 232 (505)
T ss_pred hheEEeccCCCCH------HHHHHHHHhCCcHHHhhhhcc
Confidence 6666666665532 334444445555555555555
No 27
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.18 E-value=5.9e-12 Score=106.23 Aligned_cols=129 Identities=22% Similarity=0.219 Sum_probs=67.5
Q ss_pred cCCcEeecCCccccCccchhhhcccCccceEeecCCccceecCCCCCCccceeeecccceeeccccCcccccccccccCC
Q 037249 251 SKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLGLRSFYLDLFNNSFSGSISHFCYQN 330 (420)
Q Consensus 251 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~ 330 (420)
..|+++|+++|.++ .+.+ +..-.|.++.|+++.|.+.....- ..+++
T Consensus 284 q~LtelDLS~N~I~-~iDE-SvKL~Pkir~L~lS~N~i~~v~nL-------------------------------a~L~~ 330 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDE-SVKLAPKLRRLILSQNRIRTVQNL-------------------------------AELPQ 330 (490)
T ss_pred hhhhhccccccchh-hhhh-hhhhccceeEEeccccceeeehhh-------------------------------hhccc
Confidence 44566666666554 3322 344455666666655555432211 11245
Q ss_pred ccEEEccCCccccCCcccccccccccEEeccCCccccccCccccccCCCceEeCCCcccccccc-hhhhhcCCCceEEEe
Q 037249 331 LMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVGENEFVGNIS-TWFGERFSRVVVLIL 409 (420)
Q Consensus 331 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~~~~~L~~L~l 409 (420)
|+.||+++|.++ ....+=..+-+++.|.+++|.+. ....++++-+|..||+++|+|..... ..+++ +|-|+++.+
T Consensus 331 L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~-LPCLE~l~L 406 (490)
T KOG1259|consen 331 LQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGN-LPCLETLRL 406 (490)
T ss_pred ceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHh--hhhhhHhhhhheeccccccchhhHHHhccccc-ccHHHHHhh
Confidence 666666666655 34444445556666666666553 22245556666666666666543322 23443 666666666
Q ss_pred ecccccc
Q 037249 410 RSNQFRG 416 (420)
Q Consensus 410 ~~~~~~~ 416 (420)
.+||+.+
T Consensus 407 ~~NPl~~ 413 (490)
T KOG1259|consen 407 TGNPLAG 413 (490)
T ss_pred cCCCccc
Confidence 6666654
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.18 E-value=2e-11 Score=98.37 Aligned_cols=130 Identities=32% Similarity=0.360 Sum_probs=39.4
Q ss_pred cccCceeecCCCcccCCCCCCCC-CCCCccEEEeecccccccccccccCCCcccEEEcccccCCCccchhhhhCCCCCCc
Q 037249 38 IRNLRYLNLSDTQFVGMIPPPLG-NLSNLQSLDLSLNYLYVENFLWLSGLSFLEQLDLCYVNLSKASDWLLVANTLPSLV 116 (420)
Q Consensus 38 l~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 116 (420)
...+++|+++++.|+.+ +.++ .+.+|+.|++++|.+.... .+..++.|+.|++++|.+....+. ....+++|+
T Consensus 18 ~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~i~~~--l~~~lp~L~ 91 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISSISEG--LDKNLPNLQ 91 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--T--T----TT--EEE--SS---S-CHH--HHHH-TT--
T ss_pred ccccccccccccccccc--cchhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCccccc--hHHhCCcCC
Confidence 34456666666665522 2233 3556666666666655433 255566666666666666655321 112356666
Q ss_pred EEEccCCCCCCCCc-hhhccCCCCCEEEccCCcCCCCCCCCCCCCChhhhhccccccccccC
Q 037249 117 ELRLSNCQLHHLPP-LTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSWLYRLTHFEQLSVAD 177 (420)
Q Consensus 117 ~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 177 (420)
+|++++|++.++.. ..+..+++|+.|++.+|++... -.+-...+..+|+|+.||-..
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~----~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK----KNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS----TTHHHHHHHH-TT-SEETTEE
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch----hhHHHHHHHHcChhheeCCEE
Confidence 66666666655433 2455666777777777666431 011233455667777766543
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.15 E-value=4.4e-11 Score=96.46 Aligned_cols=79 Identities=24% Similarity=0.267 Sum_probs=29.4
Q ss_pred CCccEEEccCCccccCCcccc-cccccccEEeccCCccccc-cCccccccCCCceEeCCCcccccccc--hhhhhcCCCc
Q 037249 329 QNLMLLTLSNNKFTGNLPNSL-GSLTSLVSLHLHKNIFSGT-IPISLKNCTALMILDVGENEFVGNIS--TWFGERFSRV 404 (420)
Q Consensus 329 ~~L~~L~l~~~~l~~~~~~~~-~~~~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~--~~l~~~~~~L 404 (420)
+.|++|++++|++++ +...+ ..+++|++|++++|++... ....+..+|+|+.|++.+|++++..- ..+...+|+|
T Consensus 64 ~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~L 142 (175)
T PF14580_consen 64 PRLKTLDLSNNRISS-ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSL 142 (175)
T ss_dssp TT--EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-
T ss_pred hhhhhcccCCCCCCc-cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChh
Confidence 456666666666663 32233 3466677777776666521 12345566677777777776654321 1222236666
Q ss_pred eEEE
Q 037249 405 VVLI 408 (420)
Q Consensus 405 ~~L~ 408 (420)
+.||
T Consensus 143 k~LD 146 (175)
T PF14580_consen 143 KVLD 146 (175)
T ss_dssp SEET
T ss_pred heeC
Confidence 6664
No 30
>PLN03150 hypothetical protein; Provisional
Probab=99.00 E-value=8.9e-10 Score=108.42 Aligned_cols=109 Identities=35% Similarity=0.457 Sum_probs=81.8
Q ss_pred eeccccCccccccccc--ccCCccEEEccCCccccCCcccccccccccEEeccCCccccccCccccccCCCceEeCCCcc
Q 037249 311 YLDLFNNSFSGSISHF--CYQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVGENE 388 (420)
Q Consensus 311 ~l~l~~~~~~~~~~~~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 388 (420)
.+++++|.+.+..+.. .+++|+.|+|++|.+++.+|..+..+++|+.|++++|.+.+.+|+.++++++|+.|++++|.
T Consensus 422 ~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~ 501 (623)
T PLN03150 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS 501 (623)
T ss_pred EEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCc
Confidence 5677777777766654 56788888888888877777778888888888888888887788888888888888888888
Q ss_pred cccccchhhhhcCCCceEEEeeccccccCCC
Q 037249 389 FVGNISTWFGERFSRVVVLILRSNQFRGLLP 419 (420)
Q Consensus 389 ~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~ 419 (420)
+++.+|..+.....++..+++.+|+....+|
T Consensus 502 l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 502 LSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred ccccCChHHhhccccCceEEecCCccccCCC
Confidence 8888887776544566777777776544433
No 31
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=1.1e-11 Score=104.53 Aligned_cols=69 Identities=13% Similarity=0.120 Sum_probs=45.6
Q ss_pred hhhhcCCCCCEEECCCcccccCCccchhhccCCcEeecCCcc-ccCccchhhhcccCccceEeecCCccc
Q 037249 221 EQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNK-LNGTLFEIHFVNLTKLSVSSVNENNLT 289 (420)
Q Consensus 221 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~~L~~l~l~~~~~~ 289 (420)
..++.+.+|+.+.+.|+++.+-+...+++..+|+.++++.|. ++.......+.+|+.|..|++++|...
T Consensus 204 ~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~ 273 (419)
T KOG2120|consen 204 GILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLF 273 (419)
T ss_pred HHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhcc
Confidence 345666777777777777776666666667777777777663 553333335667777777777777554
No 32
>PLN03150 hypothetical protein; Provisional
Probab=99.00 E-value=5.6e-10 Score=109.83 Aligned_cols=90 Identities=33% Similarity=0.527 Sum_probs=86.1
Q ss_pred CccEEEccCCccccCCcccccccccccEEeccCCccccccCccccccCCCceEeCCCcccccccchhhhhcCCCceEEEe
Q 037249 330 NLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVGENEFVGNISTWFGERFSRVVVLIL 409 (420)
Q Consensus 330 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~~L~~L~l 409 (420)
.++.|+|++|.+.+.+|..+..+++|+.|++++|.+.+.+|..++.+++|+.|++++|++++.+|+.+.. +++|++|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~-L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQ-LTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhc-CCCCCEEEC
Confidence 4889999999999999999999999999999999999999999999999999999999999999999997 999999999
Q ss_pred eccccccCCCC
Q 037249 410 RSNQFRGLLPT 420 (420)
Q Consensus 410 ~~~~~~~~~~~ 420 (420)
++|+++|.+|.
T Consensus 498 s~N~l~g~iP~ 508 (623)
T PLN03150 498 NGNSLSGRVPA 508 (623)
T ss_pred cCCcccccCCh
Confidence 99999999984
No 33
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.98 E-value=5.6e-10 Score=74.02 Aligned_cols=59 Identities=37% Similarity=0.482 Sum_probs=33.1
Q ss_pred CccEEEccCCccccCCcccccccccccEEeccCCccccccCccccccCCCceEeCCCcc
Q 037249 330 NLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVGENE 388 (420)
Q Consensus 330 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 388 (420)
+|++|++++|+++...+.+|.++++|++|++++|.+....++.|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45556666665554444555555555555555555554444555555555555555554
No 34
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.97 E-value=4.7e-10 Score=112.87 Aligned_cols=84 Identities=20% Similarity=0.184 Sum_probs=43.2
Q ss_pred cCCccEEEccCCccccCCcccccccccccEEeccCCccccc-cCccccccCCCceEeCCCcccccccch---hhhhcCCC
Q 037249 328 YQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGT-IPISLKNCTALMILDVGENEFVGNIST---WFGERFSR 403 (420)
Q Consensus 328 ~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~---~l~~~~~~ 403 (420)
.++|+.|.+..|...+.+......+..++.+.+.-+.+.+. .....+.++++..+.+.+=.+.....+ .+.+ +|.
T Consensus 769 ~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~-~P~ 847 (889)
T KOG4658|consen 769 APHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGK-LPL 847 (889)
T ss_pred cCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCccchhheehhcCccccc-Ccc
Confidence 36788888888876655555555555566555555544433 233444445544444443332111111 1122 666
Q ss_pred ceEEEeecc
Q 037249 404 VVVLILRSN 412 (420)
Q Consensus 404 L~~L~l~~~ 412 (420)
+.++.+.+|
T Consensus 848 ~~~~~i~~~ 856 (889)
T KOG4658|consen 848 LSTLTIVGC 856 (889)
T ss_pred ccccceecc
Confidence 666666665
No 35
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.96 E-value=4.7e-11 Score=109.22 Aligned_cols=124 Identities=25% Similarity=0.348 Sum_probs=75.1
Q ss_pred CCEEECCCcccccCCccchhhccCCcEeecCCccccCccchhhhcccCccceEeecCCccceecCCCCCCccceeeeccc
Q 037249 229 LDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLGLR 308 (420)
Q Consensus 229 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~ 308 (420)
|+.+-+++|+++.. |..++..+.|..|+.+.|.+. .++. .+..+.+|+.++++.|.+......
T Consensus 145 Lkvli~sNNkl~~l-p~~ig~~~tl~~ld~s~nei~-slps-ql~~l~slr~l~vrRn~l~~lp~E-------------- 207 (722)
T KOG0532|consen 145 LKVLIVSNNKLTSL-PEEIGLLPTLAHLDVSKNEIQ-SLPS-QLGYLTSLRDLNVRRNHLEDLPEE-------------- 207 (722)
T ss_pred ceeEEEecCccccC-CcccccchhHHHhhhhhhhhh-hchH-HhhhHHHHHHHHHhhhhhhhCCHH--------------
Confidence 44555555555533 444444555555555555554 2332 344555555555555444321110
Q ss_pred ceeeccccCcccccccccccCCccEEEccCCccccCCcccccccccccEEeccCCccccccCccc---cccCCCceEeCC
Q 037249 309 SFYLDLFNNSFSGSISHFCYQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIPISL---KNCTALMILDVG 385 (420)
Q Consensus 309 ~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l---~~l~~L~~L~l~ 385 (420)
.+.-.|.+||+++|+++ .+|-+|.++..|++|.|..|+++ ..|..| ++..=-|+|++.
T Consensus 208 -----------------l~~LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~q 268 (722)
T KOG0532|consen 208 -----------------LCSLPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQ 268 (722)
T ss_pred -----------------HhCCceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecch
Confidence 01124888999999998 78889999999999999999998 666554 344456777777
Q ss_pred Ccc
Q 037249 386 ENE 388 (420)
Q Consensus 386 ~n~ 388 (420)
-|+
T Consensus 269 A~q 271 (722)
T KOG0532|consen 269 ACQ 271 (722)
T ss_pred hcc
Confidence 773
No 36
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.96 E-value=3.5e-11 Score=106.03 Aligned_cols=80 Identities=21% Similarity=0.269 Sum_probs=45.4
Q ss_pred cCCccEEEccCCcc-ccC----CcccccccccccEEeccCCc-cccccCccccccCCCceEeCCCc-ccccccchhhhhc
Q 037249 328 YQNLMLLTLSNNKF-TGN----LPNSLGSLTSLVSLHLHKNI-FSGTIPISLKNCTALMILDVGEN-EFVGNISTWFGER 400 (420)
Q Consensus 328 ~~~L~~L~l~~~~l-~~~----~~~~~~~~~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~n-~~~~~~~~~l~~~ 400 (420)
++.|+.|.++.|.. ++. ....-.....|+.+.+++|+ +++...+.+.+|+.|+.+++-++ .++....+.+..+
T Consensus 371 C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~ 450 (483)
T KOG4341|consen 371 CPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATH 450 (483)
T ss_pred CchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhh
Confidence 45666666666642 222 11222345666777777775 33444556666777777777776 3554555555555
Q ss_pred CCCceEE
Q 037249 401 FSRVVVL 407 (420)
Q Consensus 401 ~~~L~~L 407 (420)
+|++++.
T Consensus 451 lp~i~v~ 457 (483)
T KOG4341|consen 451 LPNIKVH 457 (483)
T ss_pred Cccceeh
Confidence 6666554
No 37
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.94 E-value=8.2e-10 Score=103.70 Aligned_cols=63 Identities=40% Similarity=0.552 Sum_probs=30.6
Q ss_pred CCccEEEccCCccccCCcccccccccccEEeccCCccccccCccccccCCCceEeCCCcccccccc
Q 037249 329 QNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVGENEFVGNIS 394 (420)
Q Consensus 329 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 394 (420)
.++..+.+.+|++. ..+..+..+++++.|++++|.+. .++. ++...+++.|++++|.+.+..+
T Consensus 232 ~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 232 KNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred ccccccccCCceee-eccchhccccccceecccccccc-cccc-ccccCccCEEeccCccccccch
Confidence 34444445555544 22444455555555555555554 2222 4455555555555555544333
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.93 E-value=1e-09 Score=72.73 Aligned_cols=61 Identities=26% Similarity=0.321 Sum_probs=54.1
Q ss_pred ccccEEeccCCccccccCccccccCCCceEeCCCcccccccchhhhhcCCCceEEEeecccc
Q 037249 353 TSLVSLHLHKNIFSGTIPISLKNCTALMILDVGENEFVGNISTWFGERFSRVVVLILRSNQF 414 (420)
Q Consensus 353 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~~L~~L~l~~~~~ 414 (420)
|+|++|++++|.+....++.|..+++|++|++++|.+....+..+.. +++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~-l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSN-LPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTT-STTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcC-CCCCCEEeCcCCcC
Confidence 68999999999999666678999999999999999998666666665 99999999999986
No 39
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=5.2e-11 Score=100.47 Aligned_cols=155 Identities=22% Similarity=0.193 Sum_probs=71.7
Q ss_pred cCceeecCCCcccCC-CCCCCCCCCCccEEEeecccccccccccccCCCcccEEEcccccCCCccchhhhhCCCCCCcEE
Q 037249 40 NLRYLNLSDTQFVGM-IPPPLGNLSNLQSLDLSLNYLYVENFLWLSGLSFLEQLDLCYVNLSKASDWLLVANTLPSLVEL 118 (420)
Q Consensus 40 ~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 118 (420)
+|+++|++...++.. +...++.|.+|+.|.+.++++.+.....+++-.+|+.++++.+..-+.......+..|+.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 355555555544321 1112344555555555555554444444455555555555555443333333345555666666
Q ss_pred EccCCCCCCCCchh-hc-cCCCCCEEEccCCcC--CCCCCCCCCCCChhhhhccccccccccCCC---CccccccccccC
Q 037249 119 RLSNCQLHHLPPLT-IS-NFSSLTVLDLSFSQF--DNSLIPGWGPIPSWLYRLTHFEQLSVADRP---RRIPRSMASLCN 191 (420)
Q Consensus 119 ~l~~~~~~~~~~~~-l~-~~~~L~~L~l~~~~~--~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~---~~~~~~~~~~~~ 191 (420)
++++|.+....... +. --++|+.|+++|+.- .. ..+.....++++|.+|+++++- ......+-.++.
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~------sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~ 339 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQK------SHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNY 339 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhh------hHHHHHHHhCCceeeeccccccccCchHHHHHHhcch
Confidence 66665443222111 11 124555555555421 00 1122233445666666665554 122223344556
Q ss_pred CcEEeeccC
Q 037249 192 LRTIYLSGC 200 (420)
Q Consensus 192 L~~L~l~~~ 200 (420)
|+++.+++|
T Consensus 340 L~~lSlsRC 348 (419)
T KOG2120|consen 340 LQHLSLSRC 348 (419)
T ss_pred heeeehhhh
Confidence 666666655
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.90 E-value=6.1e-10 Score=94.27 Aligned_cols=63 Identities=30% Similarity=0.309 Sum_probs=28.9
Q ss_pred cCCCCCEEECCCcccccCCccchhhccCCcEeecCCccccCccchhhhcccCccceEeecCCccc
Q 037249 225 HFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLT 289 (420)
Q Consensus 225 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~ 289 (420)
++.++++|.+++|.+.+. ..++++-+|..||+++|++..--...+++++|-|+.+.+.+|++.
T Consensus 350 KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 350 KLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 334444555555544433 334444455555555555432111224445555555555555443
No 41
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.89 E-value=1.5e-10 Score=102.20 Aligned_cols=282 Identities=16% Similarity=0.133 Sum_probs=164.4
Q ss_pred cccEEEcccccCCCccchhhhhCCCCCCcEEEccCCC-CCCCCchhh-ccCCCCCEEEccCCc-CCCCCCCCCCCCChhh
Q 037249 88 FLEQLDLCYVNLSKASDWLLVANTLPSLVELRLSNCQ-LHHLPPLTI-SNFSSLTVLDLSFSQ-FDNSLIPGWGPIPSWL 164 (420)
Q Consensus 88 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l-~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~l 164 (420)
.|+.|.+.++.-.....+......++++++|.+.+|. +++..-..+ ..|++|+++++..+. +++ ..+....
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~------~~Lk~la 212 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITD------VSLKYLA 212 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHH------HHHHHHH
Confidence 4677777777666665555556667777777777664 222221122 456777777776643 221 0111233
Q ss_pred hhccccccccccCCCCc----cccccccccCCcEEeeccCcccceeEEEeecCcccccchhhhhcCCCCCEEECCCcc-c
Q 037249 165 YRLTHFEQLSVADRPRR----IPRSMASLCNLRTIYLSGCVSKELEILVLQSSSISGHLTEQIGHFKNLDTLDLGNNS-I 239 (420)
Q Consensus 165 ~~~~~L~~L~l~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~ 239 (420)
..+++|++++++.++.. +......+..++++...+|.-..++. +...-..+..+.++++..|. +
T Consensus 213 ~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~-----------l~~~~~~~~~i~~lnl~~c~~l 281 (483)
T KOG4341|consen 213 EGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEA-----------LLKAAAYCLEILKLNLQHCNQL 281 (483)
T ss_pred HhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHH-----------HHHHhccChHhhccchhhhccc
Confidence 35677777777776622 22334455566666666664322111 11111233445556655553 3
Q ss_pred ccCC-ccchhhccCCcEeecCCcc-ccCccchhhhcccCccceEeecCCccceecCCCCCCccceeeecccceeeccccC
Q 037249 240 VGLV-PLSLNELSKLRILHLPDNK-LNGTLFEIHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLGLRSFYLDLFNN 317 (420)
Q Consensus 240 ~~~~-~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~ 317 (420)
++.. ...-.++..|+.++.++|. +++......-.++.+|+++.+..++.-. +.
T Consensus 282 TD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fs-------------------------d~ 336 (483)
T KOG4341|consen 282 TDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFS-------------------------DR 336 (483)
T ss_pred cchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhh-------------------------hh
Confidence 3321 1122356788999998885 4444334344578899999888876311 11
Q ss_pred cccccccccccCCccEEEccCCccc--cCCcccccccccccEEeccCCc-cccccCccc----cccCCCceEeCCCcc-c
Q 037249 318 SFSGSISHFCYQNLMLLTLSNNKFT--GNLPNSLGSLTSLVSLHLHKNI-FSGTIPISL----KNCTALMILDVGENE-F 389 (420)
Q Consensus 318 ~~~~~~~~~~~~~L~~L~l~~~~l~--~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~l----~~l~~L~~L~l~~n~-~ 389 (420)
.++.. ..+.+.|+.+++..+... +.+...-.+++.|+++.+++|. +++.....+ .....|..+-+++++ +
T Consensus 337 ~ft~l--~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i 414 (483)
T KOG4341|consen 337 GFTML--GRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLI 414 (483)
T ss_pred hhhhh--hcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCc
Confidence 11100 012368999999998754 2244445689999999999996 554433333 346789999999996 4
Q ss_pred ccccchhhhhcCCCceEEEeecccc
Q 037249 390 VGNISTWFGERFSRVVVLILRSNQF 414 (420)
Q Consensus 390 ~~~~~~~l~~~~~~L~~L~l~~~~~ 414 (420)
++...+.+.. ++.|+.+++.+|+-
T Consensus 415 ~d~~Le~l~~-c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 415 TDATLEHLSI-CRNLERIELIDCQD 438 (483)
T ss_pred hHHHHHHHhh-Ccccceeeeechhh
Confidence 5555555665 99999999999854
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.86 E-value=3.8e-09 Score=106.47 Aligned_cols=111 Identities=32% Similarity=0.321 Sum_probs=82.1
Q ss_pred cCCCCCCcEEecccCCCCCCCchhhhhccccCceeecCCCcccCCCCCCCCCCCCccEEEeecccccccccccccCCCcc
Q 037249 10 LLDLNHLSYLGLSFNDFQGVQIPRFIGSIRNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENFLWLSGLSFL 89 (420)
Q Consensus 10 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 89 (420)
|..++.|++||+++|.-.. .+|..++.+-+||+|+++++.+. .+|..++++..|.+|++..+.-....+.....+.+|
T Consensus 567 f~~m~~LrVLDLs~~~~l~-~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~L 644 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLS-KLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSL 644 (889)
T ss_pred HhhCcceEEEECCCCCccC-cCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccc
Confidence 7789999999999874322 58999999999999999999887 788889999999999998776333334555668899
Q ss_pred cEEEcccccCCCccchhhhhCCCCCCcEEEccC
Q 037249 90 EQLDLCYVNLSKASDWLLVANTLPSLVELRLSN 122 (420)
Q Consensus 90 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 122 (420)
|+|.+..............+..+.+|+.+.+..
T Consensus 645 r~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 645 RVLRLPRSALSNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred cEEEeeccccccchhhHHhhhcccchhhheeec
Confidence 999888766444333344455666666666544
No 43
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.85 E-value=6.2e-09 Score=97.81 Aligned_cols=176 Identities=36% Similarity=0.461 Sum_probs=91.3
Q ss_pred CCCCCccEEEeecccccccccccccCC-CcccEEEcccccCCCccchhhhhCCCCCCcEEEccCCCCCCCCchhhccCCC
Q 037249 60 GNLSNLQSLDLSLNYLYVENFLWLSGL-SFLEQLDLCYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPLTISNFSS 138 (420)
Q Consensus 60 ~~l~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 138 (420)
..++.++.|++.++.+...... .... ++|+.|+++++.+...+ ..+..+++|+.|++++|++..++. .....+.
T Consensus 113 ~~~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N~i~~l~---~~~~~l~~L~~L~l~~N~l~~l~~-~~~~~~~ 187 (394)
T COG4886 113 LELTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDNKIESLP---SPLRNLPNLKNLDLSFNDLSDLPK-LLSNLSN 187 (394)
T ss_pred hcccceeEEecCCcccccCccc-cccchhhcccccccccchhhhh---hhhhccccccccccCCchhhhhhh-hhhhhhh
Confidence 3345556666655555444332 2223 25666666666555542 134456666666666666655553 1225566
Q ss_pred CCEEEccCCcCCCCCCCCCCCCChhhhhccccccccccCCC-CccccccccccCCcEEeeccCcccceeEEEeecCcccc
Q 037249 139 LTVLDLSFSQFDNSLIPGWGPIPSWLYRLTHFEQLSVADRP-RRIPRSMASLCNLRTIYLSGCVSKELEILVLQSSSISG 217 (420)
Q Consensus 139 L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~l~~L~l~~~~~~~ 217 (420)
|+.|++++|.+.+ ++........|+.+.++++. ...+..+..+.++..+.+..+++..
T Consensus 188 L~~L~ls~N~i~~--------l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~------------- 246 (394)
T COG4886 188 LNNLDLSGNKISD--------LPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLED------------- 246 (394)
T ss_pred hhheeccCCcccc--------CchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeee-------------
Confidence 6666666666543 44444444455555555553 4444444444444444443333211
Q ss_pred cchhhhhcCCCCCEEECCCcccccCCccchhhccCCcEeecCCcccc
Q 037249 218 HLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKLN 264 (420)
Q Consensus 218 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 264 (420)
.+..++.++.++++++++|.+.+... ++...+++.++++++.+.
T Consensus 247 -~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 247 -LPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred -ccchhccccccceecccccccccccc--ccccCccCEEeccCcccc
Confidence 13344555556666666666665522 555566666666666655
No 44
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.85 E-value=1.9e-10 Score=105.39 Aligned_cols=168 Identities=30% Similarity=0.391 Sum_probs=95.4
Q ss_pred EEeecCcccccchhhhhcCCCCCEEECCCcccccCCccchhhccCCcEeecCCccccCccchhhhcccCccceEeecCCc
Q 037249 208 LVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENN 287 (420)
Q Consensus 208 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~ 287 (420)
.+++.|.+. .+|..+..+..|+.+.++.|.+..+ |..+.++..|..++++.|++. ..|. .+..++ |+.+-+++|+
T Consensus 80 aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r~i-p~~i~~L~~lt~l~ls~NqlS-~lp~-~lC~lp-Lkvli~sNNk 154 (722)
T KOG0532|consen 80 ADLSRNRFS-ELPEEACAFVSLESLILYHNCIRTI-PEAICNLEALTFLDLSSNQLS-HLPD-GLCDLP-LKVLIVSNNK 154 (722)
T ss_pred hhccccccc-cCchHHHHHHHHHHHHHHhccceec-chhhhhhhHHHHhhhccchhh-cCCh-hhhcCc-ceeEEEecCc
Confidence 344445544 4566666667777777777777654 667777777888888888775 3433 333333 6777777777
Q ss_pred cceecCCCCCCccceeeecccceeeccccCcccccccccccCCccEEEccCCccccCCcccccccccccEEeccCCcccc
Q 037249 288 LTLKVNHDWVPPFQLVQLGLRSFYLDLFNNSFSGSISHFCYQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSG 367 (420)
Q Consensus 288 ~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~ 367 (420)
++......- ..++|..||.+.|.+. .+|..++++.+|+.|+++.|++.
T Consensus 155 l~~lp~~ig------------------------------~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~- 202 (722)
T KOG0532|consen 155 LTSLPEEIG------------------------------LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE- 202 (722)
T ss_pred cccCCcccc------------------------------cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-
Confidence 664332221 1244555555555554 34444555555555555555555
Q ss_pred ccCccccccCCCceEeCCCcccccccchhhhhcCCCceEEEeeccccc
Q 037249 368 TIPISLKNCTALMILDVGENEFVGNISTWFGERFSRVVVLILRSNQFR 415 (420)
Q Consensus 368 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~~L~~L~l~~~~~~ 415 (420)
.+|+.+. .-.|..||++.|+++ .+|..|.+ |..|++|-|.+||++
T Consensus 203 ~lp~El~-~LpLi~lDfScNkis-~iPv~fr~-m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 203 DLPEELC-SLPLIRLDFSCNKIS-YLPVDFRK-MRHLQVLQLENNPLQ 247 (722)
T ss_pred hCCHHHh-CCceeeeecccCcee-ecchhhhh-hhhheeeeeccCCCC
Confidence 4444444 334555555555554 45555554 555555555555553
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.76 E-value=4.7e-09 Score=88.89 Aligned_cols=195 Identities=22% Similarity=0.228 Sum_probs=116.0
Q ss_pred CccEEEeecccccccccc-cc-cCCCcccEEEcccccCCCccchhhhhCCCCCCcEEEccCCCCCCCCchhhccCCCCCE
Q 037249 64 NLQSLDLSLNYLYVENFL-WL-SGLSFLEQLDLCYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPLTISNFSSLTV 141 (420)
Q Consensus 64 ~L~~L~l~~~~~~~~~~~-~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 141 (420)
-++.+.+-++.+...+.. .+ ..+..++.+++.+|.++++.++.+.+.++|.|++|+++.|.+.......=....+|+.
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 444555666666554432 12 5678899999999999999998889999999999999999886543311146778999
Q ss_pred EEccCCcCCCCCCCCCCCCChhhhhccccccccccCCC----Ccccccccc-ccCCcEEeeccCcc-------------c
Q 037249 142 LDLSFSQFDNSLIPGWGPIPSWLYRLTHFEQLSVADRP----RRIPRSMAS-LCNLRTIYLSGCVS-------------K 203 (420)
Q Consensus 142 L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~----~~~~~~~~~-~~~L~~L~l~~~~~-------------~ 203 (420)
+.+.|+.+. |..+...+..++.++.|+++.+. ..-...... -+.++++.+.+|.. +
T Consensus 126 lVLNgT~L~------w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fp 199 (418)
T KOG2982|consen 126 LVLNGTGLS------WTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFP 199 (418)
T ss_pred EEEcCCCCC------hhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcc
Confidence 999888764 35566677778888888887763 000111111 12455555555533 3
Q ss_pred ceeEEEeecCcccc-cchhhhhcCCCCCEEECCCcccccCC-ccchhhccCCcEeecCCcccc
Q 037249 204 ELEILVLQSSSISG-HLTEQIGHFKNLDTLDLGNNSIVGLV-PLSLNELSKLRILHLPDNKLN 264 (420)
Q Consensus 204 ~l~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~ 264 (420)
++..+.+..|.+.. ........+|.+.-|+++.+.+.++. ...+.+++.|..|.++++++.
T Consensus 200 nv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 200 NVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred cchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 33333333333221 11222333444445555555555431 123444556666666666544
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.76 E-value=1.1e-09 Score=103.07 Aligned_cols=150 Identities=29% Similarity=0.347 Sum_probs=83.2
Q ss_pred ccccCceeecCCCcccCCCCCCCCCCCCccEEEeecccccccccccccCCCcccEEEcccccCCCccchhhhhCCCCCCc
Q 037249 37 SIRNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENFLWLSGLSFLEQLDLCYVNLSKASDWLLVANTLPSLV 116 (420)
Q Consensus 37 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 116 (420)
.+..++.+.++.+.+.. .-..+..+.+|+.|++.+|.+...... +..+++|++|++++|.+..+.. +..++.|+
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~~i~~----l~~l~~L~ 143 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNKITKLEG----LSTLTLLK 143 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcccc-hhhhhcchheeccccccccccc----hhhccchh
Confidence 34555555566655542 222355566666666666665443321 4556667777777766666542 33455566
Q ss_pred EEEccCCCCCCCCchhhccCCCCCEEEccCCcCCCCCCCCCCCCChh-hhhccccccccccCCCCccccccccccCCcEE
Q 037249 117 ELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSW-LYRLTHFEQLSVADRPRRIPRSMASLCNLRTI 195 (420)
Q Consensus 117 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L 195 (420)
.|++.+|.+..+. .+..++.|+.+++++|.+.. +... ...+.+++.+++.++......++..+..+..+
T Consensus 144 ~L~l~~N~i~~~~--~~~~l~~L~~l~l~~n~i~~--------ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~ 213 (414)
T KOG0531|consen 144 ELNLSGNLISDIS--GLESLKSLKLLDLSYNRIVD--------IENDELSELISLEELDLGGNSIREIEGLDLLKKLVLL 213 (414)
T ss_pred hheeccCcchhcc--CCccchhhhcccCCcchhhh--------hhhhhhhhccchHHHhccCCchhcccchHHHHHHHHh
Confidence 7777777666554 34446666777777666643 1111 35566666666666664444444444444444
Q ss_pred eeccCcc
Q 037249 196 YLSGCVS 202 (420)
Q Consensus 196 ~l~~~~~ 202 (420)
.+..+.+
T Consensus 214 ~l~~n~i 220 (414)
T KOG0531|consen 214 SLLDNKI 220 (414)
T ss_pred hcccccc
Confidence 4444443
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.75 E-value=1e-09 Score=103.30 Aligned_cols=63 Identities=29% Similarity=0.375 Sum_probs=36.5
Q ss_pred CCCcccEEEcccccCCCccchhhhhCCCCCCcEEEccCCCCCCCCchhhccCCCCCEEEccCCcCCC
Q 037249 85 GLSFLEQLDLCYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDN 151 (420)
Q Consensus 85 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 151 (420)
.+..++.+.+..+.+.... ..+..+++++.|++.+|++..+.. .+..+++|++|++++|.++.
T Consensus 70 ~l~~l~~l~l~~n~i~~~~---~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~ 132 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKIL---NHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITK 132 (414)
T ss_pred HhHhHHhhccchhhhhhhh---cccccccceeeeeccccchhhccc-chhhhhcchheecccccccc
Confidence 3445555555555554421 124556677777777776665543 15566777777777776643
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.65 E-value=1.2e-08 Score=86.55 Aligned_cols=179 Identities=20% Similarity=0.154 Sum_probs=100.4
Q ss_pred eEEEeecCcccc--cchhhhhcCCCCCEEECCCcccccCCccchhhccCCcEeecCCccccCccchhhhcccCccceEee
Q 037249 206 EILVLQSSSISG--HLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSV 283 (420)
Q Consensus 206 ~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l 283 (420)
+.+++.+|.+++ .+...+.++|.|+.|+++.|.+...+...-....+|++|.+.+..+.-......+..+|.++.+++
T Consensus 74 ~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHm 153 (418)
T KOG2982|consen 74 KELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHM 153 (418)
T ss_pred hhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhh
Confidence 333344444432 456677889999999999998876532221345689999999887654444446778899999999
Q ss_pred cCCccceecCCCC---CCccceeeecccceeeccccCccccccccc----ccCCccEEEccCCccccC-Ccccccccccc
Q 037249 284 NENNLTLKVNHDW---VPPFQLVQLGLRSFYLDLFNNSFSGSISHF----CYQNLMLLTLSNNKFTGN-LPNSLGSLTSL 355 (420)
Q Consensus 284 ~~~~~~~~~~~~~---~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~----~~~~L~~L~l~~~~l~~~-~~~~~~~~~~L 355 (420)
+.|.........- .+...+.. +.+..|...-+.... .|+++..+-+..|.+.+. -...+..+|.+
T Consensus 154 S~N~~rq~n~Dd~c~e~~s~~v~t-------lh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~ 226 (418)
T KOG2982|consen 154 SDNSLRQLNLDDNCIEDWSTEVLT-------LHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSL 226 (418)
T ss_pred ccchhhhhccccccccccchhhhh-------hhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcc
Confidence 8885543221111 11112221 222222222111111 246666666666655422 22334555566
Q ss_pred cEEeccCCcccccc--CccccccCCCceEeCCCcccccc
Q 037249 356 VSLHLHKNIFSGTI--PISLKNCTALMILDVGENEFVGN 392 (420)
Q Consensus 356 ~~L~l~~n~~~~~~--~~~l~~l~~L~~L~l~~n~~~~~ 392 (420)
.-|+++.+.+. .+ .+++..+++|..|.++++++.+.
T Consensus 227 ~~LnL~~~~id-swasvD~Ln~f~~l~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 227 SCLNLGANNID-SWASVDALNGFPQLVDLRVSENPLSDP 264 (418)
T ss_pred hhhhhcccccc-cHHHHHHHcCCchhheeeccCCccccc
Confidence 66666666665 32 24556667777777777766544
No 49
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.59 E-value=1.3e-08 Score=85.12 Aligned_cols=243 Identities=20% Similarity=0.150 Sum_probs=146.9
Q ss_pred cCCCCCCcEEecccCCCCCCCchhh----hhccccCceeecCCCccc---CC-------CCCCCCCCCCccEEEeecccc
Q 037249 10 LLDLNHLSYLGLSFNDFQGVQIPRF----IGSIRNLRYLNLSDTQFV---GM-------IPPPLGNLSNLQSLDLSLNYL 75 (420)
Q Consensus 10 ~~~~~~L~~L~l~~~~i~~~~~~~~----~~~l~~L~~L~l~~~~~~---~~-------~~~~l~~l~~L~~L~l~~~~~ 75 (420)
+..+..+..+++|+|.|... ...+ +.+-.+|+..+++.-... .. +..++-+||+|+.+++|.|.+
T Consensus 26 l~~~d~~~evdLSGNtigtE-A~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTE-AMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHhhcceeEEeccCCcccHH-HHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 34577888999999998765 3333 344577888887754211 11 223567899999999999997
Q ss_pred cccccc----cccCCCcccEEEcccccCCCccc-----------hhhhhCCCCCCcEEEccCCCCCCCCch----hhccC
Q 037249 76 YVENFL----WLSGLSFLEQLDLCYVNLSKASD-----------WLLVANTLPSLVELRLSNCQLHHLPPL----TISNF 136 (420)
Q Consensus 76 ~~~~~~----~~~~l~~L~~L~l~~~~~~~~~~-----------~~~~~~~~~~L~~L~l~~~~~~~~~~~----~l~~~ 136 (420)
+...+. .+++...|.+|.+++|.+..+.. .......-|.|++.....|++..-+.. .+..-
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh 184 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESH 184 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhh
Confidence 765543 35778899999999998766521 112235678899999999988765543 22333
Q ss_pred CCCCEEEccCCcCCCCCCCCCCCCChhhhhccccccccccCCC------CccccccccccCCcEEeeccCcccceeEEEe
Q 037249 137 SSLTVLDLSFSQFDNSLIPGWGPIPSWLYRLTHFEQLSVADRP------RRIPRSMASLCNLRTIYLSGCVSKELEILVL 210 (420)
Q Consensus 137 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~------~~~~~~~~~~~~L~~L~l~~~~~~~l~~L~l 210 (420)
..|+++.+..|.+...++.. -....+..+++|+.|++.++. ..+...+..++.|++|.+.+|-++.
T Consensus 185 ~~lk~vki~qNgIrpegv~~--L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~------ 256 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVTM--LAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN------ 256 (388)
T ss_pred cCceeEEeeecCcCcchhHH--HHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc------
Confidence 68999999999886532221 112245566777777777665 2234455556667777777664421
Q ss_pred ecCcccccchhhh--hcCCCCCEEECCCcccccCCccc-------hhhccCCcEeecCCcccc
Q 037249 211 QSSSISGHLTEQI--GHFKNLDTLDLGNNSIVGLVPLS-------LNELSKLRILHLPDNKLN 264 (420)
Q Consensus 211 ~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~~~~~-------~~~~~~L~~L~l~~~~l~ 264 (420)
.-...+...+ ...|+|..|...+|.+....... -..+|-|..|.+.+|.+.
T Consensus 257 ---~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 257 ---EGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred ---ccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 0000111111 22366667766666554321110 123455666666666654
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.58 E-value=1.3e-09 Score=102.84 Aligned_cols=126 Identities=29% Similarity=0.288 Sum_probs=77.8
Q ss_pred CCEEECCCcccccCCccchhhccCCcEeecCCccccCccchhhhcccCccceEeecCCccceecCCCCCCccceeeeccc
Q 037249 229 LDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLGLR 308 (420)
Q Consensus 229 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~ 308 (420)
|...+.++|++.-+ ...+.-++.|+.|+++.|+++..- .+..|+.|+.||++.|.+.......-.
T Consensus 166 L~~a~fsyN~L~~m-D~SLqll~ale~LnLshNk~~~v~---~Lr~l~~LkhLDlsyN~L~~vp~l~~~----------- 230 (1096)
T KOG1859|consen 166 LATASFSYNRLVLM-DESLQLLPALESLNLSHNKFTKVD---NLRRLPKLKHLDLSYNCLRHVPQLSMV----------- 230 (1096)
T ss_pred HhhhhcchhhHHhH-HHHHHHHHHhhhhccchhhhhhhH---HHHhcccccccccccchhccccccchh-----------
Confidence 55666677776643 455666777888888888776322 566777777777777776532211110
Q ss_pred ceeeccccCcccccccccccCCccEEEccCCccccCCcccccccccccEEeccCCccccc-cCccccccCCCceEeCCCc
Q 037249 309 SFYLDLFNNSFSGSISHFCYQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGT-IPISLKNCTALMILDVGEN 387 (420)
Q Consensus 309 ~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n 387 (420)
+ .+|+.|++++|.++. ...+.++.+|+.||+++|-+.+- -.+.+..+..|+.|++.||
T Consensus 231 -------g------------c~L~~L~lrnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 231 -------G------------CKLQLLNLRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGN 289 (1096)
T ss_pred -------h------------hhheeeeecccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCC
Confidence 0 247777777777762 23456777777777777766521 1123445667777777777
Q ss_pred ccc
Q 037249 388 EFV 390 (420)
Q Consensus 388 ~~~ 390 (420)
++-
T Consensus 290 Pl~ 292 (1096)
T KOG1859|consen 290 PLC 292 (1096)
T ss_pred ccc
Confidence 763
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.48 E-value=7.5e-09 Score=97.79 Aligned_cols=124 Identities=25% Similarity=0.289 Sum_probs=62.5
Q ss_pred CccEEEeecccccccccccccCCCcccEEEcccccCCCccchhhhhCCCCCCcEEEccCCCCCCCCchhhccCCCCCEEE
Q 037249 64 NLQSLDLSLNYLYVENFLWLSGLSFLEQLDLCYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPLTISNFSSLTVLD 143 (420)
Q Consensus 64 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 143 (420)
.|.+.++++|.+...+ ..+.-++.++.|++++|++.... .+..|++|++||++.|++..++......|. |+.|.
T Consensus 165 ~L~~a~fsyN~L~~mD-~SLqll~ale~LnLshNk~~~v~----~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~ 238 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMD-ESLQLLPALESLNLSHNKFTKVD----NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLN 238 (1096)
T ss_pred hHhhhhcchhhHHhHH-HHHHHHHHhhhhccchhhhhhhH----HHHhcccccccccccchhccccccchhhhh-heeee
Confidence 3444555555543322 22344455666666666555432 445566666666666665555543333333 66666
Q ss_pred ccCCcCCCCCCCCCCCCChhhhhccccccccccCCC---CccccccccccCCcEEeeccCcc
Q 037249 144 LSFSQFDNSLIPGWGPIPSWLYRLTHFEQLSVADRP---RRIPRSMASLCNLRTIYLSGCVS 202 (420)
Q Consensus 144 l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~---~~~~~~~~~~~~L~~L~l~~~~~ 202 (420)
+++|.+++ ...+.++.+|+.|++++|. ..-...++.+..|+.|.+.||.+
T Consensus 239 lrnN~l~t---------L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 239 LRNNALTT---------LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ecccHHHh---------hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 66665542 3445555566666665554 11222334444555555655544
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.36 E-value=8.7e-08 Score=80.32 Aligned_cols=89 Identities=26% Similarity=0.259 Sum_probs=63.1
Q ss_pred ccCCccEEEccCCcccc----CCcccccccccccEEeccCCccccccCccc------cccCCCceEeCCCcccccc----
Q 037249 327 CYQNLMLLTLSNNKFTG----NLPNSLGSLTSLVSLHLHKNIFSGTIPISL------KNCTALMILDVGENEFVGN---- 392 (420)
Q Consensus 327 ~~~~L~~L~l~~~~l~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l------~~l~~L~~L~l~~n~~~~~---- 392 (420)
.+++|+.||+.+|-++- .+..++..++.|++|.+.+|-++......+ ...|.|+.|...+|.+-+.
T Consensus 212 y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~ 291 (388)
T COG5238 212 YSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILD 291 (388)
T ss_pred HhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeee
Confidence 34789999999998872 234556677889999999998875554333 1368888998888855332
Q ss_pred --cchhhhhcCCCceEEEeeccccc
Q 037249 393 --ISTWFGERFSRVVVLILRSNQFR 415 (420)
Q Consensus 393 --~~~~l~~~~~~L~~L~l~~~~~~ 415 (420)
.++....++|-|..|.+.+|.|.
T Consensus 292 ~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 292 ISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred echhhhhhcccHHHHHHHHccCcch
Confidence 33444556788888888888775
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.24 E-value=4e-07 Score=89.75 Aligned_cols=133 Identities=23% Similarity=0.199 Sum_probs=77.1
Q ss_pred CCcEEecccCCCCCCCchhhhh-ccccCceeecCCCcccCC-CCCCCCCCCCccEEEeecccccccccccccCCCcccEE
Q 037249 15 HLSYLGLSFNDFQGVQIPRFIG-SIRNLRYLNLSDTQFVGM-IPPPLGNLSNLQSLDLSLNYLYVENFLWLSGLSFLEQL 92 (420)
Q Consensus 15 ~L~~L~l~~~~i~~~~~~~~~~-~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 92 (420)
+|++||+++...-....+..++ .+|.|++|.+.+-.+... ......++|+|+.||+|++.+... ..++++++|+.|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L 200 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL 200 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence 5667777765533333444444 567777777776554322 112235667777777777766544 336677777777
Q ss_pred EcccccCCCccchhhhhCCCCCCcEEEccCCCCCCCCc---hh---hccCCCCCEEEccCCcCC
Q 037249 93 DLCYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPP---LT---ISNFSSLTVLDLSFSQFD 150 (420)
Q Consensus 93 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~---l~~~~~L~~L~l~~~~~~ 150 (420)
.+.+-.+.....+ ..+-.+++|+.||++......... .. -..+|+|+.|+.+++.+.
T Consensus 201 ~mrnLe~e~~~~l-~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 201 SMRNLEFESYQDL-IDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred hccCCCCCchhhH-HHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 7776666654432 234457777777777654433221 00 133677777777777664
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.17 E-value=1.9e-06 Score=52.16 Aligned_cols=36 Identities=28% Similarity=0.416 Sum_probs=17.3
Q ss_pred cccEEeccCCccccccCccccccCCCceEeCCCcccc
Q 037249 354 SLVSLHLHKNIFSGTIPISLKNCTALMILDVGENEFV 390 (420)
Q Consensus 354 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 390 (420)
+|++|++++|+++ .+|..++++++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4455555555555 33334555555555555555554
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.12 E-value=5.4e-06 Score=66.71 Aligned_cols=105 Identities=22% Similarity=0.202 Sum_probs=58.3
Q ss_pred ccCceeecCCCcccCCCCCCCCCCCCccEEEeecccccccccccccCCCcccEEEcccccCCCccchhhhhCCCCCCcEE
Q 037249 39 RNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENFLWLSGLSFLEQLDLCYVNLSKASDWLLVANTLPSLVEL 118 (420)
Q Consensus 39 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 118 (420)
.+...+|+++|.+. .+ ..|..++.|.+|.+.+|+|+.+++..-.-+++|+.|.+.+|.+....+ ...+..||+|++|
T Consensus 42 d~~d~iDLtdNdl~-~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~d-l~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR-KL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGD-LDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchh-hc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhh-cchhccCCcccee
Confidence 34556666666654 22 225556666666666666666665544455666666666666655543 2344556666666
Q ss_pred EccCCCCCCCCc---hhhccCCCCCEEEccC
Q 037249 119 RLSNCQLHHLPP---LTISNFSSLTVLDLSF 146 (420)
Q Consensus 119 ~l~~~~~~~~~~---~~l~~~~~L~~L~l~~ 146 (420)
.+-+|.+..... ..+..+|+|+.|++..
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhh
Confidence 666655543321 2345556666666544
No 56
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.05 E-value=3.6e-07 Score=68.61 Aligned_cols=86 Identities=22% Similarity=0.300 Sum_probs=61.3
Q ss_pred cCCccEEEccCCccccCCcccccccccccEEeccCCccccccCccccccCCCceEeCCCcccccccchhhhhcCCCceEE
Q 037249 328 YQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVGENEFVGNISTWFGERFSRVVVL 407 (420)
Q Consensus 328 ~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~~L~~L 407 (420)
++.+++|++++|.+. .+|.-+..++.|+.|+++.|++. ..|+.+..+.++..||..+|.+-....+.+-...+.|..
T Consensus 76 f~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~eid~dl~~s~~~al~~- 152 (177)
T KOG4579|consen 76 FPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARAEIDVDLFYSSLPALIK- 152 (177)
T ss_pred cchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccccCcHHHhccccHHHHH-
Confidence 457888899999988 67767899999999999999988 778888888899999998887653333322222333333
Q ss_pred EeeccccccC
Q 037249 408 ILRSNQFRGL 417 (420)
Q Consensus 408 ~l~~~~~~~~ 417 (420)
++++++.+.
T Consensus 153 -lgnepl~~~ 161 (177)
T KOG4579|consen 153 -LGNEPLGDE 161 (177)
T ss_pred -hcCCccccc
Confidence 355565543
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.95 E-value=9.7e-06 Score=49.05 Aligned_cols=37 Identities=46% Similarity=0.618 Sum_probs=31.7
Q ss_pred CCccEEEccCCccccCCcccccccccccEEeccCCccc
Q 037249 329 QNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFS 366 (420)
Q Consensus 329 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~ 366 (420)
++|++|++++|+++ .++..+.++++|+.|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 47999999999999 56667999999999999999998
No 58
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.93 E-value=9.8e-07 Score=66.34 Aligned_cols=84 Identities=20% Similarity=0.154 Sum_probs=69.1
Q ss_pred cCCccEEEccCCccccCCcccccccccccEEeccCCccccccCccccccCCCceEeCCCcccccccchhhhhcCCCceEE
Q 037249 328 YQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVGENEFVGNISTWFGERFSRVVVL 407 (420)
Q Consensus 328 ~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~~L~~L 407 (420)
...|+..++++|.+.+..+..-..++-++.|++++|.++ .+|+.++..+.|+.|+++.|++. ..|+.+++ +-++-.|
T Consensus 52 ~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~-L~~l~~L 128 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAP-LIKLDML 128 (177)
T ss_pred CceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHH-HHhHHHh
Confidence 367888999999998444444456678999999999999 88888999999999999999996 88888887 8888888
Q ss_pred Eeecccc
Q 037249 408 ILRSNQF 414 (420)
Q Consensus 408 ~l~~~~~ 414 (420)
+.-+|..
T Consensus 129 ds~~na~ 135 (177)
T KOG4579|consen 129 DSPENAR 135 (177)
T ss_pred cCCCCcc
Confidence 8777754
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.88 E-value=1.5e-05 Score=64.17 Aligned_cols=100 Identities=21% Similarity=0.141 Sum_probs=74.4
Q ss_pred eeccccCcccccccccccCCccEEEccCCccccCCcccccccccccEEeccCCccccc-cCccccccCCCceEeCCCccc
Q 037249 311 YLDLFNNSFSGSISHFCYQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGT-IPISLKNCTALMILDVGENEF 389 (420)
Q Consensus 311 ~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~ 389 (420)
.+++++|.+........++.|.+|.+.+|+|+..-|..-..+++|+.|.+.+|.+... ..+-++.||+|++|.+-+|++
T Consensus 46 ~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv 125 (233)
T KOG1644|consen 46 AIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPV 125 (233)
T ss_pred eecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCch
Confidence 4566666666555555678999999999999966665556778999999999988732 234577899999999999988
Q ss_pred ccccch---hhhhcCCCceEEEeec
Q 037249 390 VGNIST---WFGERFSRVVVLILRS 411 (420)
Q Consensus 390 ~~~~~~---~l~~~~~~L~~L~l~~ 411 (420)
...--- .+.+ +|+|++|+..+
T Consensus 126 ~~k~~YR~yvl~k-lp~l~~LDF~k 149 (233)
T KOG1644|consen 126 EHKKNYRLYVLYK-LPSLRTLDFQK 149 (233)
T ss_pred hcccCceeEEEEe-cCcceEeehhh
Confidence 754331 2343 88999998654
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.87 E-value=9.6e-06 Score=80.17 Aligned_cols=132 Identities=22% Similarity=0.241 Sum_probs=96.2
Q ss_pred CCCCCCcEEecccCCCCCCCchhhhhccccCceeecCCCcccCCCCCCCCCCCCccEEEeecccccc-cccccccCCCcc
Q 037249 11 LDLNHLSYLGLSFNDFQGVQIPRFIGSIRNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYV-ENFLWLSGLSFL 89 (420)
Q Consensus 11 ~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L 89 (420)
..+|.|+.|.+.+-.+....+...+.++|+|+.||++++.+... ..++++++|++|.+.+-.+.. .....+..+.+|
T Consensus 145 ~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L 222 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKL 222 (699)
T ss_pred hhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCC
Confidence 36899999999998776555777788999999999999998744 568899999999887766543 344557789999
Q ss_pred cEEEcccccCCCccc----hhhhhCCCCCCcEEEccCCCCCCCCchh-hccCCCCCEEEc
Q 037249 90 EQLDLCYVNLSKASD----WLLVANTLPSLVELRLSNCQLHHLPPLT-ISNFSSLTVLDL 144 (420)
Q Consensus 90 ~~L~l~~~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l 144 (420)
+.||+|......... ....-..+|+|+.||.+++.+....... +..-++|+.+.+
T Consensus 223 ~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~ 282 (699)
T KOG3665|consen 223 RVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAA 282 (699)
T ss_pred CeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhh
Confidence 999999876655431 1223346899999999988765433322 233455555543
No 61
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.83 E-value=5e-06 Score=80.44 Aligned_cols=63 Identities=32% Similarity=0.325 Sum_probs=26.1
Q ss_pred CCcccEEEcccccCCCccchhhhhCCCCCCcEEEccCCC-CCCCCchh-hccCCCCCEEEccCCc
Q 037249 86 LSFLEQLDLCYVNLSKASDWLLVANTLPSLVELRLSNCQ-LHHLPPLT-ISNFSSLTVLDLSFSQ 148 (420)
Q Consensus 86 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~-l~~~~~L~~L~l~~~~ 148 (420)
+++|+.++++++.......+......|++|++|.+..|. +++..... ...++.|++|+++++.
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 345555555554422222222222235555555544443 33222222 2334555555555443
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.72 E-value=2.5e-05 Score=65.66 Aligned_cols=82 Identities=28% Similarity=0.291 Sum_probs=35.5
Q ss_pred CCCCccEEEeeccc--ccccccccccCCCcccEEEcccccCCCccchhhhhCCCCCCcEEEccCCCCCCCCc---hhhcc
Q 037249 61 NLSNLQSLDLSLNY--LYVENFLWLSGLSFLEQLDLCYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPP---LTISN 135 (420)
Q Consensus 61 ~l~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~ 135 (420)
.+++|++|.++.|. +.....-...++++|+++++++|++..... ...+..+++|..|++..|..+.+.. ..+.-
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lst-l~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~l 141 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLST-LRPLKELENLKSLDLFNCSVTNLDDYREKVFLL 141 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccc-cchhhhhcchhhhhcccCCccccccHHHHHHHH
Confidence 34455555555552 221111112334555555555555544321 2234445555555555554433221 23344
Q ss_pred CCCCCEEE
Q 037249 136 FSSLTVLD 143 (420)
Q Consensus 136 ~~~L~~L~ 143 (420)
+++|++|+
T Consensus 142 l~~L~~LD 149 (260)
T KOG2739|consen 142 LPSLKYLD 149 (260)
T ss_pred hhhhcccc
Confidence 45555554
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.68 E-value=0.00019 Score=65.71 Aligned_cols=75 Identities=13% Similarity=0.181 Sum_probs=42.2
Q ss_pred cccccCCcEEeeccCcccceeEEEeecCcccccchhhhhcCCCCCEEECCCcccccCCccchhhccCCcEeecCCc-ccc
Q 037249 186 MASLCNLRTIYLSGCVSKELEILVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLPDN-KLN 264 (420)
Q Consensus 186 ~~~~~~L~~L~l~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~ 264 (420)
+..+.+++.|++++|.+.. +|. --.+|+.|.+++|.-....|..+ .++|++|++++| .+.
T Consensus 48 ~~~~~~l~~L~Is~c~L~s--------------LP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~ 108 (426)
T PRK15386 48 IEEARASGRLYIKDCDIES--------------LPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS 108 (426)
T ss_pred HHHhcCCCEEEeCCCCCcc--------------cCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc
Confidence 3446667777776664322 221 11358888888765444445433 357888888887 343
Q ss_pred CccchhhhcccCccceEeecCCc
Q 037249 265 GTLFEIHFVNLTKLSVSSVNENN 287 (420)
Q Consensus 265 ~~~~~~~~~~~~~L~~l~l~~~~ 287 (420)
.+| ++|+.|++..+.
T Consensus 109 -sLP-------~sLe~L~L~~n~ 123 (426)
T PRK15386 109 -GLP-------ESVRSLEIKGSA 123 (426)
T ss_pred -ccc-------cccceEEeCCCC
Confidence 333 356666665443
No 64
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.63 E-value=0.00019 Score=65.73 Aligned_cols=139 Identities=15% Similarity=0.081 Sum_probs=82.9
Q ss_pred hhcCCCCCEEECCCcccccCCccchhhccCCcEeecCCccccCccchhhhcccCccceEeecCCccceecCCCCCCccce
Q 037249 223 IGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQL 302 (420)
Q Consensus 223 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~ 302 (420)
+..+++++.|++++|.+... |. -.++|++|.+++|.-...+|. .+ .++|+.|++++|......+ ..+
T Consensus 48 ~~~~~~l~~L~Is~c~L~sL-P~---LP~sLtsL~Lsnc~nLtsLP~-~L--P~nLe~L~Ls~Cs~L~sLP------~sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESL-PV---LPNELTEITIENCNNLTTLPG-SI--PEGLEKLTVCHCPEISGLP------ESV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCccc-CC---CCCCCcEEEccCCCCcccCCc-hh--hhhhhheEccCcccccccc------ccc
Confidence 55678999999999977765 42 234799999998763335554 22 2589999999884222111 123
Q ss_pred eeecccceeeccccCcccccccccccCCccEEEccCCccc--cCCcccccccccccEEeccCCccccccCccccccCCCc
Q 037249 303 VQLGLRSFYLDLFNNSFSGSISHFCYQNLMLLTLSNNKFT--GNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALM 380 (420)
Q Consensus 303 ~~l~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~--~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 380 (420)
+ .+++..+...... .-+++|++|.+.+++.. ...+.. -.++|+.|++++|... ..|+.+. .+|+
T Consensus 115 e-------~L~L~~n~~~~L~--~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk 180 (426)
T PRK15386 115 R-------SLEIKGSATDSIK--NVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQ 180 (426)
T ss_pred c-------eEEeCCCCCcccc--cCcchHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCc
Confidence 2 2333333222111 11257888888654321 011211 1268899999988866 4555444 5888
Q ss_pred eEeCCCcc
Q 037249 381 ILDVGENE 388 (420)
Q Consensus 381 ~L~l~~n~ 388 (420)
.|+++.+.
T Consensus 181 ~L~ls~n~ 188 (426)
T PRK15386 181 SITLHIEQ 188 (426)
T ss_pred EEEecccc
Confidence 88887763
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.55 E-value=0.00029 Score=54.59 Aligned_cols=122 Identities=11% Similarity=0.176 Sum_probs=51.0
Q ss_pred ccCCCCCCcEEecccCCCCCCCchhhhhccccCceeecCCCcccCCCCCCCCCCCCccEEEeecccccccccccccCCCc
Q 037249 9 SLLDLNHLSYLGLSFNDFQGVQIPRFIGSIRNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENFLWLSGLSF 88 (420)
Q Consensus 9 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 88 (420)
+|..+++|+.+.+.. .+... -...|..+++|+.+.+..+ +...-..+|.++++++.+.+.. .+...+..++..+++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I-~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKI-GENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE--TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-CeeEe-Chhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 567777777777764 23311 2234556667777777654 4434445566676677777754 334444455666666
Q ss_pred ccEEEcccccCCCccchhhhhCCCCCCcEEEccCCCCCCCCchhhccCCCC
Q 037249 89 LEQLDLCYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPLTISNFSSL 139 (420)
Q Consensus 89 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 139 (420)
++.+.+..+ +...+. ..+..+ .++.+.+.. .+..+....+.++++|
T Consensus 83 l~~i~~~~~-~~~i~~--~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGS--SSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp ECEEEETTT--BEEHT--TTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccccCcc-ccEEch--hhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 666666543 332221 134444 666666554 3444444455555544
No 66
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.54 E-value=1.4e-05 Score=77.29 Aligned_cols=64 Identities=19% Similarity=0.251 Sum_probs=30.9
Q ss_pred CCCCCCcEEEccCCC-CCCCCchhhc-cCCCCCEEEccCCc-CCCCCCCCCCCCChhhhhccccccccccCCC
Q 037249 110 NTLPSLVELRLSNCQ-LHHLPPLTIS-NFSSLTVLDLSFSQ-FDNSLIPGWGPIPSWLYRLTHFEQLSVADRP 179 (420)
Q Consensus 110 ~~~~~L~~L~l~~~~-~~~~~~~~l~-~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 179 (420)
..+.+|+.|+++++. +++.....+. .|+.|++|.+.++. +++ ..+......++.|+.|+++++.
T Consensus 240 ~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~------~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 240 SICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTD------EGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccch------hHHHHHHHhcCcccEEeeecCc
Confidence 344555566665554 4443333332 25556666554444 332 2233444455555555555554
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.44 E-value=4.9e-06 Score=70.30 Aligned_cols=97 Identities=20% Similarity=0.236 Sum_probs=43.6
Q ss_pred cccEEEcccccCCCccchhhhhCCCCCCcEEEccCCCCCCCCchhhccCCCCCEEEccCCcCCCCCCCCCCCCChhhhhc
Q 037249 88 FLEQLDLCYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSWLYRL 167 (420)
Q Consensus 88 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~ 167 (420)
+.++|+..++.+.++. ....|+.|+.|.++-|+++.+. .+..|.+|++|+|..|.+.+ -.-..++.++
T Consensus 20 ~vkKLNcwg~~L~DIs----ic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~s------ldEL~YLknl 87 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDIS----ICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIES------LDELEYLKNL 87 (388)
T ss_pred HhhhhcccCCCccHHH----HHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhccccc------HHHHHHHhcC
Confidence 4444444444444332 2334555555555555544443 24445555555555444432 0012234445
Q ss_pred cccccccccCCCCc-------cccccccccCCcEEe
Q 037249 168 THFEQLSVADRPRR-------IPRSMASLCNLRTIY 196 (420)
Q Consensus 168 ~~L~~L~l~~~~~~-------~~~~~~~~~~L~~L~ 196 (420)
++|+.|++..|+.. -...+..+|||++|+
T Consensus 88 psLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 88 PSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred chhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 55555555554411 122345566666665
No 68
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.36 E-value=0.00081 Score=52.02 Aligned_cols=14 Identities=14% Similarity=0.344 Sum_probs=5.6
Q ss_pred cccccccccEEecc
Q 037249 348 SLGSLTSLVSLHLH 361 (420)
Q Consensus 348 ~~~~~~~L~~L~l~ 361 (420)
+|..+++|+.+++.
T Consensus 76 ~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 76 AFSNCTNLKNIDIP 89 (129)
T ss_dssp TTTT-TTECEEEET
T ss_pred cccccccccccccC
Confidence 33344444444443
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.33 E-value=0.00011 Score=61.91 Aligned_cols=98 Identities=18% Similarity=0.072 Sum_probs=58.6
Q ss_pred cccCcccccccccccCCccEEEccCC--ccccCCcccccccccccEEeccCCcccc-ccCccccccCCCceEeCCCcccc
Q 037249 314 LFNNSFSGSISHFCYQNLMLLTLSNN--KFTGNLPNSLGSLTSLVSLHLHKNIFSG-TIPISLKNCTALMILDVGENEFV 390 (420)
Q Consensus 314 l~~~~~~~~~~~~~~~~L~~L~l~~~--~l~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~ 390 (420)
+.+..++.......+++|++|.++.| ++...++-....+|+|++|++++|++.. .-...+..++.|.+||+.+|..+
T Consensus 50 ~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 50 VINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred hhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCcc
Confidence 34444444444445677888888888 5554444444556888888888887652 11224456677778888887665
Q ss_pred cccc--hhhhhcCCCceEEEeec
Q 037249 391 GNIS--TWFGERFSRVVVLILRS 411 (420)
Q Consensus 391 ~~~~--~~l~~~~~~L~~L~l~~ 411 (420)
..-- +.++..+++|++|+-..
T Consensus 130 ~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 130 NLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred ccccHHHHHHHHhhhhccccccc
Confidence 4211 23455567777775443
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.19 E-value=1.4e-05 Score=67.57 Aligned_cols=101 Identities=22% Similarity=0.180 Sum_probs=61.7
Q ss_pred cccCceeecCCCcccCCCCCCCCCCCCccEEEeecccccccccccccCCCcccEEEcccccCCCccchhhhhCCCCCCcE
Q 037249 38 IRNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENFLWLSGLSFLEQLDLCYVNLSKASDWLLVANTLPSLVE 117 (420)
Q Consensus 38 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 117 (420)
+.+.+.|++-+|.+.++. ...+++-|++|.|+-|+|+...+ +..|.+|++|.|..|.+..+.+ .+.+.++|+|+.
T Consensus 18 l~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldE-L~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDE-LEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHH-HHHHhcCchhhh
Confidence 455667777777766431 13567777777777777665544 5667777777777777776655 345666777777
Q ss_pred EEccCCCCCCCCc-----hhhccCCCCCEEE
Q 037249 118 LRLSNCQLHHLPP-----LTISNFSSLTVLD 143 (420)
Q Consensus 118 L~l~~~~~~~~~~-----~~l~~~~~L~~L~ 143 (420)
|.|..|....... ..+.-+|+|++|+
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 7776654432221 1334456666653
No 71
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.97 E-value=0.0011 Score=53.85 Aligned_cols=35 Identities=20% Similarity=0.048 Sum_probs=18.4
Q ss_pred ccccEEeccCCc-cccccCccccccCCCceEeCCCc
Q 037249 353 TSLVSLHLHKNI-FSGTIPISLKNCTALMILDVGEN 387 (420)
Q Consensus 353 ~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~n 387 (420)
++|+.|+|++|+ |+......+.++++|+.|.+.+=
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDL 186 (221)
T ss_pred cchheeeccCCCeechhHHHHHHHhhhhHHHHhcCc
Confidence 555555555553 55444445555555555555444
No 72
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.92 E-value=0.00011 Score=69.59 Aligned_cols=283 Identities=24% Similarity=0.221 Sum_probs=157.8
Q ss_pred CCCccCCCCCCcEEecccCCCCCCCchhhhhcc----ccCceeecCCCcccCC----CCCCCCCCCCccEEEeecccccc
Q 037249 6 VNPSLLDLNHLSYLGLSFNDFQGVQIPRFIGSI----RNLRYLNLSDTQFVGM----IPPPLGNLSNLQSLDLSLNYLYV 77 (420)
Q Consensus 6 l~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~l----~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~ 77 (420)
+-+++...+.|+.|+++.|.+.+.........+ ..++++++..|.++.. +...+.....++.++++.|.+..
T Consensus 107 l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~ 186 (478)
T KOG4308|consen 107 LAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIE 186 (478)
T ss_pred HHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccch
Confidence 345667778888888888887755333222222 3467777777777644 33445567888888888887643
Q ss_pred cccc----ccc----CCCcccEEEcccccCCCc--cchhhhhCCCCC-CcEEEccCCCCCCCCchh----hccC-CCCCE
Q 037249 78 ENFL----WLS----GLSFLEQLDLCYVNLSKA--SDWLLVANTLPS-LVELRLSNCQLHHLPPLT----ISNF-SSLTV 141 (420)
Q Consensus 78 ~~~~----~~~----~l~~L~~L~l~~~~~~~~--~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~----l~~~-~~L~~ 141 (420)
.+.. .+. ...+++.|++.++.++.. ..+...+...+. +..+++..|.+.+..... +..+ +++++
T Consensus 187 ~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~ 266 (478)
T KOG4308|consen 187 LGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRV 266 (478)
T ss_pred hhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhh
Confidence 3221 122 356788888888877644 223334555565 667888888877653322 2333 67789
Q ss_pred EEccCCcCCCCCCCCCCCCChhhhhccccccccccCCCCc------cccccccccCCcEEeeccCcc-------------
Q 037249 142 LDLSFSQFDNSLIPGWGPIPSWLYRLTHFEQLSVADRPRR------IPRSMASLCNLRTIYLSGCVS------------- 202 (420)
Q Consensus 142 L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~------~~~~~~~~~~L~~L~l~~~~~------------- 202 (420)
++++.|.+.+.... .+...+..+++++.+.+.++... ..........+..+.+.++..
T Consensus 267 l~l~~nsi~~~~~~---~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 343 (478)
T KOG4308|consen 267 LDLSRNSITEKGVR---DLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGTGKGTRGGTSVLAEAD 343 (478)
T ss_pred hhhhcCCccccchH---HHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccccCccchhHHHHHHHHH
Confidence 99999988764442 35566777788888888887611 112222333444555554322
Q ss_pred ---cceeEEEeecCcccccch----hhhhcC-CCCCEEECCCcccccC----CccchhhccCCcEeecCCccccCccchh
Q 037249 203 ---KELEILVLQSSSISGHLT----EQIGHF-KNLDTLDLGNNSIVGL----VPLSLNELSKLRILHLPDNKLNGTLFEI 270 (420)
Q Consensus 203 ---~~l~~L~l~~~~~~~~~~----~~l~~~-~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~l~~~~~~~ 270 (420)
........+.+...+... .....- ..+..+++..+.+.+. .+......+.+..++++.|...++....
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~n~~~~~~~~~ 423 (478)
T KOG4308|consen 344 AQRQLLSELGISGNRVGEEGLALLVLAKSNPKSELLRLSLNSQVIEGRGALRLAAQLASNEKLEILDLSLNSLHDEGAEV 423 (478)
T ss_pred HHhhhhHHHHhhhccchHHHHHHHhhhhcccCcccchhhhhccccccHHHHHhhhhhhhcchhhhhhhhcCccchhhHHH
Confidence 011111112222221111 111111 2244555555444332 2333445667788888777654433332
Q ss_pred h----hcccCccceEeecCCccceec
Q 037249 271 H----FVNLTKLSVSSVNENNLTLKV 292 (420)
Q Consensus 271 ~----~~~~~~L~~l~l~~~~~~~~~ 292 (420)
. -.+. .++.+.++.+..+...
T Consensus 424 l~~~~~~~~-~~~~~~l~~~~~~~~~ 448 (478)
T KOG4308|consen 424 LTEQLSRNG-SLKALRLSRNPITALG 448 (478)
T ss_pred HHHhhhhcc-cchhhhhccChhhhcc
Confidence 1 1234 7777777777766543
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.84 E-value=8.6e-05 Score=70.37 Aligned_cols=71 Identities=20% Similarity=0.143 Sum_probs=43.4
Q ss_pred chhhhhcCCCCCEEECCCcccccCCccch----hhc-cCCcEeecCCccccCccchh---hhcccCccceEeecCCccc
Q 037249 219 LTEQIGHFKNLDTLDLGNNSIVGLVPLSL----NEL-SKLRILHLPDNKLNGTLFEI---HFVNLTKLSVSSVNENNLT 289 (420)
Q Consensus 219 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~----~~~-~~L~~L~l~~~~l~~~~~~~---~~~~~~~L~~l~l~~~~~~ 289 (420)
+...+...+.|+.+++++|.+.+.....+ ... +.++.|.+..|.+++..... .+.....++.++++.|.+.
T Consensus 107 l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~ 185 (478)
T KOG4308|consen 107 LAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLI 185 (478)
T ss_pred HHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccc
Confidence 34455666778888888887775422222 122 45677777778776544432 3444677777777777765
No 74
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=95.64 E-value=0.0059 Score=31.30 Aligned_cols=23 Identities=17% Similarity=0.229 Sum_probs=14.5
Q ss_pred cCCCceEeCCCcccccccchhhh
Q 037249 376 CTALMILDVGENEFVGNISTWFG 398 (420)
Q Consensus 376 l~~L~~L~l~~n~~~~~~~~~l~ 398 (420)
+++|++|+|++|++++.++..++
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHhC
Confidence 46778888888887777666554
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.24 E-value=0.0062 Score=49.56 Aligned_cols=84 Identities=20% Similarity=0.217 Sum_probs=54.3
Q ss_pred CCccEEEeecccccccccccccCCCcccEEEcccccCCCccchhhhhCCCCCCcEEEccCC-CCCCCCchhhccCCCCCE
Q 037249 63 SNLQSLDLSLNYLYVENFLWLSGLSFLEQLDLCYVNLSKASDWLLVANTLPSLVELRLSNC-QLHHLPPLTISNFSSLTV 141 (420)
Q Consensus 63 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~ 141 (420)
..++.+|-++..|...+.+.+..++.++.|.+.+|....+..+-..-+-.++|+.|+++.| +|++-....+..+++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 3577788888888777777777888888888777766555332222234567777777765 455554445566666666
Q ss_pred EEccC
Q 037249 142 LDLSF 146 (420)
Q Consensus 142 L~l~~ 146 (420)
|.+.+
T Consensus 181 L~l~~ 185 (221)
T KOG3864|consen 181 LHLYD 185 (221)
T ss_pred HHhcC
Confidence 66544
No 76
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.08 E-value=0.012 Score=29.46 Aligned_cols=18 Identities=39% Similarity=0.506 Sum_probs=8.1
Q ss_pred ccEEeccCCccccccCccc
Q 037249 355 LVSLHLHKNIFSGTIPISL 373 (420)
Q Consensus 355 L~~L~l~~n~~~~~~~~~l 373 (420)
|++|++++|.++ .+|..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 444444444444 344333
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.11 E-value=0.035 Score=25.69 Aligned_cols=8 Identities=38% Similarity=0.513 Sum_probs=2.9
Q ss_pred cEEeccCC
Q 037249 356 VSLHLHKN 363 (420)
Q Consensus 356 ~~L~l~~n 363 (420)
+.|+|++|
T Consensus 4 ~~L~l~~n 11 (17)
T PF13504_consen 4 RTLDLSNN 11 (17)
T ss_dssp SEEEETSS
T ss_pred CEEECCCC
Confidence 33333333
No 78
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=93.42 E-value=0.046 Score=29.19 Aligned_cols=24 Identities=21% Similarity=0.219 Sum_probs=18.3
Q ss_pred CCCceEeCCCcccccccchhhhhc
Q 037249 377 TALMILDVGENEFVGNISTWFGER 400 (420)
Q Consensus 377 ~~L~~L~l~~n~~~~~~~~~l~~~ 400 (420)
++|++|||++|.+.+.+...+++.
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~~ 25 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAEA 25 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHHH
Confidence 578888888888887777766653
No 79
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=89.32 E-value=0.22 Score=25.96 Aligned_cols=23 Identities=17% Similarity=0.211 Sum_probs=13.5
Q ss_pred cCCCceEeCCCc-ccccccchhhh
Q 037249 376 CTALMILDVGEN-EFVGNISTWFG 398 (420)
Q Consensus 376 l~~L~~L~l~~n-~~~~~~~~~l~ 398 (420)
+++|+.|+|++| .+++.+...++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 456677777776 36655544443
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.48 E-value=0.016 Score=48.34 Aligned_cols=59 Identities=29% Similarity=0.265 Sum_probs=28.5
Q ss_pred CccEEEccCCccccCCcccccccccccEEeccCCccccccCccccccCCCceEeCCCcccc
Q 037249 330 NLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVGENEFV 390 (420)
Q Consensus 330 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 390 (420)
.+.+|+++.|++. ..|..+.....+..++...|... ..|..+.+.|.+++++.-+|.+.
T Consensus 66 ~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 66 RLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred HHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcch
Confidence 3444455544444 34444444444444444444444 44445555555555555555443
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.72 E-value=0.6 Score=24.17 Aligned_cols=21 Identities=57% Similarity=0.773 Sum_probs=11.9
Q ss_pred CCCcEEEccCCCCCCCCchhh
Q 037249 113 PSLVELRLSNCQLHHLPPLTI 133 (420)
Q Consensus 113 ~~L~~L~l~~~~~~~~~~~~l 133 (420)
++|++|++++|++..++...+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 455666666666665554433
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.72 E-value=0.6 Score=24.17 Aligned_cols=21 Identities=57% Similarity=0.773 Sum_probs=11.9
Q ss_pred CCCcEEEccCCCCCCCCchhh
Q 037249 113 PSLVELRLSNCQLHHLPPLTI 133 (420)
Q Consensus 113 ~~L~~L~l~~~~~~~~~~~~l 133 (420)
++|++|++++|++..++...+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 455666666666665554433
No 83
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=87.27 E-value=5.4 Score=37.48 Aligned_cols=61 Identities=23% Similarity=0.183 Sum_probs=31.9
Q ss_pred ccEEEccCCcccc---CCcccccccccccEEeccCCcccc----ccCccccccCCCceEeCCCccccc
Q 037249 331 LMLLTLSNNKFTG---NLPNSLGSLTSLVSLHLHKNIFSG----TIPISLKNCTALMILDVGENEFVG 391 (420)
Q Consensus 331 L~~L~l~~~~l~~---~~~~~~~~~~~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~l~~n~~~~ 391 (420)
++.+.++.|.+.- ........-+.+++|+++||.... .+|.+.+..-.++....+.|....
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~~ 482 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPED 482 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCccc
Confidence 5566666666551 111233445667777777775542 334444444555555555555443
No 84
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=83.19 E-value=0.46 Score=45.07 Aligned_cols=68 Identities=18% Similarity=0.096 Sum_probs=46.1
Q ss_pred cCCCcccEEEcccccCCCccchhhhhCCCCCCcEEEccCC--CCCCCCchhhccCCCCCEEEccCCcCCC
Q 037249 84 SGLSFLEQLDLCYVNLSKASDWLLVANTLPSLVELRLSNC--QLHHLPPLTISNFSSLTVLDLSFSQFDN 151 (420)
Q Consensus 84 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 151 (420)
.+.+.+..+++++|++.....+.......|+|..|+|++| .+.......-.+...|++|.+.||++.+
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 4567788888888888887666656667888888888888 4433322111233457888888888754
No 85
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=79.17 E-value=1.3 Score=42.15 Aligned_cols=81 Identities=22% Similarity=0.222 Sum_probs=48.7
Q ss_pred cCCccEEEccCCcccc--CCcccccccccccEEeccCCccccccCccccc--cCCCceEeCCCcccccccc------hhh
Q 037249 328 YQNLMLLTLSNNKFTG--NLPNSLGSLTSLVSLHLHKNIFSGTIPISLKN--CTALMILDVGENEFVGNIS------TWF 397 (420)
Q Consensus 328 ~~~L~~L~l~~~~l~~--~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~--l~~L~~L~l~~n~~~~~~~------~~l 397 (420)
++.+..+++++|++.. .+...-...|+|..|+|++|...-.....+.+ ...|++|-+.||++..... ..+
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~~i 296 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVSAI 296 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHHHH
Confidence 4677888888887651 22223345688888888888321112223332 3568888888888755432 134
Q ss_pred hhcCCCceEEE
Q 037249 398 GERFSRVVVLI 408 (420)
Q Consensus 398 ~~~~~~L~~L~ 408 (420)
.+.+|+|..|+
T Consensus 297 ~~~FPKL~~LD 307 (585)
T KOG3763|consen 297 RELFPKLLRLD 307 (585)
T ss_pred HHhcchheeec
Confidence 44577777664
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=77.50 E-value=1.6 Score=22.69 Aligned_cols=16 Identities=31% Similarity=0.617 Sum_probs=8.3
Q ss_pred cccEEeccCCccccccC
Q 037249 354 SLVSLHLHKNIFSGTIP 370 (420)
Q Consensus 354 ~L~~L~l~~n~~~~~~~ 370 (420)
+|+.|++++|+++ .+|
T Consensus 3 ~L~~L~vs~N~Lt-~LP 18 (26)
T smart00364 3 SLKELNVSNNQLT-SLP 18 (26)
T ss_pred ccceeecCCCccc-cCc
Confidence 4555555555555 444
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=74.59 E-value=2.6 Score=21.95 Aligned_cols=15 Identities=33% Similarity=0.377 Sum_probs=11.0
Q ss_pred cCCCceEeCCCcccc
Q 037249 376 CTALMILDVGENEFV 390 (420)
Q Consensus 376 l~~L~~L~l~~n~~~ 390 (420)
+.+|+.|++++|+|.
T Consensus 1 L~~L~~L~L~~NkI~ 15 (26)
T smart00365 1 LTNLEELDLSQNKIK 15 (26)
T ss_pred CCccCEEECCCCccc
Confidence 356788888888775
No 88
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=72.88 E-value=0.17 Score=42.49 Aligned_cols=86 Identities=13% Similarity=0.080 Sum_probs=49.9
Q ss_pred ccCCCCCCcEEecccCCCCCCCchhhhhccccCceeecCCCcccCCCCCCCCCCCCccEEEeecccccccccccccCCCc
Q 037249 9 SLLDLNHLSYLGLSFNDFQGVQIPRFIGSIRNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENFLWLSGLSF 88 (420)
Q Consensus 9 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 88 (420)
.+..++..+.||++.+..- .+-.-++-+..+.+|+++.+.+. ..|..++....++++++..|.....+. .+...+.
T Consensus 37 ei~~~kr~tvld~~s~r~v--n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~p~-s~~k~~~ 112 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV--NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQPK-SQKKEPH 112 (326)
T ss_pred hhhccceeeeehhhhhHHH--hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhCCc-cccccCC
Confidence 3556667777777777543 33344555566667777766654 455666666666666665555443332 2455566
Q ss_pred ccEEEccccc
Q 037249 89 LEQLDLCYVN 98 (420)
Q Consensus 89 L~~L~l~~~~ 98 (420)
++++++-.+.
T Consensus 113 ~k~~e~k~~~ 122 (326)
T KOG0473|consen 113 PKKNEQKKTE 122 (326)
T ss_pred cchhhhccCc
Confidence 6666555544
No 89
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=41.92 E-value=72 Score=30.41 Aligned_cols=17 Identities=18% Similarity=-0.082 Sum_probs=11.3
Q ss_pred CCCCcEEecccCCCCCC
Q 037249 13 LNHLSYLGLSFNDFQGV 29 (420)
Q Consensus 13 ~~~L~~L~l~~~~i~~~ 29 (420)
-+.+++++++.+.+.+.
T Consensus 164 npr~r~~dls~npi~dk 180 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDK 180 (553)
T ss_pred cchhhhhccCCCccccc
Confidence 34567788888766544
No 90
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=23.58 E-value=65 Score=16.62 Aligned_cols=7 Identities=29% Similarity=0.216 Sum_probs=2.6
Q ss_pred cEEEccc
Q 037249 90 EQLDLCY 96 (420)
Q Consensus 90 ~~L~l~~ 96 (420)
+.|.+..
T Consensus 3 KtL~L~~ 9 (26)
T PF07723_consen 3 KTLHLDS 9 (26)
T ss_pred eEEEeeE
Confidence 3333333
No 91
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=20.97 E-value=56 Score=38.44 Aligned_cols=32 Identities=28% Similarity=0.330 Sum_probs=21.4
Q ss_pred EccCCccccCCcccccccccccEEeccCCccc
Q 037249 335 TLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFS 366 (420)
Q Consensus 335 ~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~ 366 (420)
||++|+|+...+..|..+++|+.|+|++|++.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 46667776555566667777777777777665
No 92
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=20.30 E-value=41 Score=17.56 Aligned_cols=14 Identities=21% Similarity=0.233 Sum_probs=9.1
Q ss_pred ccccCCCceEeCCC
Q 037249 373 LKNCTALMILDVGE 386 (420)
Q Consensus 373 l~~l~~L~~L~l~~ 386 (420)
+..+|+|+.||...
T Consensus 9 i~~LPqL~~LD~~~ 22 (26)
T smart00446 9 IRLLPQLRKLDXXX 22 (26)
T ss_pred HHHCCccceecccc
Confidence 45677777777643
Done!