Query 037249
Match_columns 420
No_of_seqs 195 out of 2780
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 17:30:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037249.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037249hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 4.6E-46 1.6E-50 376.1 32.0 404 2-420 212-722 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.5E-44 5.1E-49 365.1 30.0 398 6-420 92-556 (768)
3 3t6q_A CD180 antigen; protein- 100.0 3.4E-43 1.2E-47 347.4 30.0 408 4-417 47-562 (606)
4 3t6q_A CD180 antigen; protein- 100.0 5.8E-42 2E-46 338.6 31.1 402 4-419 25-540 (606)
5 3vq2_A TLR4, TOLL-like recepto 100.0 8E-42 2.7E-46 337.6 29.1 400 6-419 48-562 (606)
6 2z63_A TOLL-like receptor 4, v 100.0 1.5E-41 5.1E-46 333.4 28.8 244 164-420 278-536 (570)
7 1ziw_A TOLL-like receptor 3; i 100.0 1.9E-40 6.6E-45 332.0 32.4 407 7-417 42-599 (680)
8 3vq2_A TLR4, TOLL-like recepto 100.0 1.3E-40 4.6E-45 328.8 27.5 399 4-419 24-537 (606)
9 1ziw_A TOLL-like receptor 3; i 100.0 1.1E-39 3.7E-44 326.5 31.7 400 4-416 17-518 (680)
10 4eco_A Uncharacterized protein 100.0 1.5E-40 5.3E-45 328.5 23.6 350 31-415 198-600 (636)
11 2z81_A CD282 antigen, TOLL-lik 100.0 4.3E-40 1.5E-44 321.4 26.0 396 4-419 18-514 (549)
12 3j0a_A TOLL-like receptor 5; m 100.0 6.3E-40 2.1E-44 334.6 26.6 402 7-419 41-543 (844)
13 2z63_A TOLL-like receptor 4, v 100.0 1.2E-38 4E-43 312.8 29.4 389 5-419 21-511 (570)
14 4ecn_A Leucine-rich repeat pro 100.0 1.5E-38 5.2E-43 319.6 25.7 350 31-416 440-841 (876)
15 2z7x_B TOLL-like receptor 1, v 100.0 7.2E-39 2.5E-43 310.6 20.9 389 5-418 14-484 (520)
16 3j0a_A TOLL-like receptor 5; m 100.0 5.1E-38 1.8E-42 320.5 27.8 400 3-418 61-563 (844)
17 3v47_A TOLL-like receptor 5B a 100.0 1.3E-37 4.4E-42 296.9 28.5 360 14-419 30-412 (455)
18 4eco_A Uncharacterized protein 100.0 8.8E-39 3E-43 315.9 20.8 333 49-420 193-583 (636)
19 4g8a_A TOLL-like receptor 4; l 100.0 2.2E-36 7.4E-41 300.5 29.1 398 4-416 44-581 (635)
20 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 6.2E-37 2.1E-41 299.4 23.5 200 204-418 277-513 (562)
21 4ecn_A Leucine-rich repeat pro 100.0 3.5E-37 1.2E-41 309.7 22.2 347 6-399 440-849 (876)
22 2z7x_B TOLL-like receptor 1, v 100.0 3.6E-36 1.2E-40 291.7 23.7 370 17-419 3-460 (520)
23 1o6v_A Internalin A; bacterial 100.0 6.1E-35 2.1E-39 278.7 30.6 346 12-416 44-389 (466)
24 2z81_A CD282 antigen, TOLL-lik 100.0 4E-35 1.4E-39 286.3 27.3 382 13-419 4-490 (549)
25 3v47_A TOLL-like receptor 5B a 100.0 4.9E-35 1.7E-39 279.0 22.8 359 2-394 42-412 (455)
26 1jl5_A Outer protein YOPM; leu 100.0 1.3E-34 4.6E-39 274.1 21.2 355 4-420 24-416 (454)
27 4g8a_A TOLL-like receptor 4; l 100.0 2.7E-33 9.1E-38 278.2 30.5 400 5-420 19-560 (635)
28 1o6v_A Internalin A; bacterial 100.0 6.2E-33 2.1E-37 264.8 30.8 329 6-391 61-389 (466)
29 3bz5_A Internalin-J, INLJ; leu 100.0 5.1E-34 1.7E-38 270.3 22.9 345 4-420 32-392 (457)
30 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2E-33 6.7E-38 274.7 26.5 373 13-419 30-489 (562)
31 4fmz_A Internalin; leucine ric 100.0 9.2E-33 3.1E-37 253.8 28.5 306 36-415 41-346 (347)
32 2id5_A Lingo-1, leucine rich r 100.0 1.2E-33 4.1E-38 270.9 22.6 319 17-391 14-334 (477)
33 3o6n_A APL1; leucine-rich repe 100.0 2.1E-32 7.3E-37 255.3 26.1 322 12-403 43-365 (390)
34 2id5_A Lingo-1, leucine rich r 100.0 9.3E-33 3.2E-37 264.7 24.1 337 4-396 24-362 (477)
35 4fmz_A Internalin; leucine ric 100.0 5.1E-32 1.7E-36 248.8 28.1 307 9-390 39-346 (347)
36 3bz5_A Internalin-J, INLJ; leu 100.0 5.4E-32 1.8E-36 256.4 23.1 325 31-416 34-369 (457)
37 3oja_B Anopheles plasmodium-re 100.0 1.9E-31 6.5E-36 262.0 25.7 318 12-398 49-366 (597)
38 1jl5_A Outer protein YOPM; leu 100.0 1.5E-31 5.1E-36 253.2 23.0 347 8-420 5-377 (454)
39 1z7x_W Ribonuclease inhibitor; 100.0 2.2E-34 7.5E-39 275.0 0.6 384 13-416 2-441 (461)
40 3o6n_A APL1; leucine-rich repe 100.0 4.3E-31 1.5E-35 246.5 22.2 310 37-416 43-353 (390)
41 2ft3_A Biglycan; proteoglycan, 100.0 2.3E-29 8E-34 229.4 22.5 300 4-388 17-331 (332)
42 3oja_B Anopheles plasmodium-re 100.0 2E-29 6.8E-34 247.7 23.1 308 38-416 50-359 (597)
43 1xku_A Decorin; proteoglycan, 100.0 1.8E-28 6.3E-33 223.4 25.2 291 15-388 32-330 (330)
44 1z7x_W Ribonuclease inhibitor; 100.0 1.1E-31 3.6E-36 256.4 1.6 371 10-407 24-460 (461)
45 3ogk_B Coronatine-insensitive 100.0 1.2E-31 4E-36 264.2 0.4 397 9-417 68-528 (592)
46 1xku_A Decorin; proteoglycan, 100.0 1.3E-27 4.3E-32 217.8 25.6 292 39-413 31-330 (330)
47 2ft3_A Biglycan; proteoglycan, 100.0 2.6E-27 8.9E-32 215.9 23.9 290 40-413 34-331 (332)
48 3ogk_B Coronatine-insensitive 100.0 4E-30 1.4E-34 253.3 4.7 388 12-412 110-548 (592)
49 1ogq_A PGIP-2, polygalacturona 100.0 4.8E-28 1.6E-32 218.5 16.4 248 40-388 51-302 (313)
50 1ogq_A PGIP-2, polygalacturona 100.0 5.6E-28 1.9E-32 218.0 15.0 189 181-416 116-306 (313)
51 2z80_A TOLL-like receptor 2, v 99.9 2.6E-27 9E-32 217.7 16.6 284 38-394 30-318 (353)
52 2p1m_B Transport inhibitor res 99.9 4.7E-29 1.6E-33 245.8 3.5 160 10-177 62-244 (594)
53 2z66_A Variable lymphocyte rec 99.9 1.5E-26 5.2E-31 208.4 16.6 183 64-289 29-212 (306)
54 2z66_A Variable lymphocyte rec 99.9 1.6E-25 5.5E-30 201.7 19.7 233 113-392 28-263 (306)
55 3o53_A Protein LRIM1, AGAP0063 99.9 1.2E-26 4.2E-31 209.8 11.7 159 226-418 119-279 (317)
56 2z80_A TOLL-like receptor 2, v 99.9 1.9E-25 6.6E-30 205.3 18.9 257 113-419 52-318 (353)
57 2p1m_B Transport inhibitor res 99.9 1.4E-27 4.8E-32 235.2 4.3 382 17-415 46-519 (594)
58 3zyj_A Leucine-rich repeat-con 99.9 9.4E-25 3.2E-29 206.7 21.4 85 329-414 207-291 (440)
59 3zyi_A Leucine-rich repeat-con 99.9 1.1E-24 3.6E-29 207.1 21.4 229 113-415 75-303 (452)
60 4fcg_A Uncharacterized protein 99.9 8.6E-25 2.9E-29 198.3 19.2 225 112-415 80-314 (328)
61 1ozn_A Reticulon 4 receptor; N 99.9 4.1E-25 1.4E-29 196.9 16.5 157 225-412 127-284 (285)
62 3zyj_A Leucine-rich repeat-con 99.9 3.2E-24 1.1E-28 203.0 23.1 248 41-366 45-292 (440)
63 3g06_A SSPH2 (leucine-rich rep 99.9 8E-24 2.7E-28 206.3 25.7 266 39-399 40-306 (622)
64 3zyi_A Leucine-rich repeat-con 99.9 2.3E-24 7.9E-29 204.7 20.5 248 16-290 56-304 (452)
65 3g06_A SSPH2 (leucine-rich rep 99.9 2.5E-23 8.7E-28 202.8 26.1 267 15-377 41-308 (622)
66 4fcg_A Uncharacterized protein 99.9 4E-24 1.4E-28 193.9 18.2 232 14-289 81-314 (328)
67 1wwl_A Monocyte differentiatio 99.9 4.5E-25 1.5E-29 199.1 9.7 110 35-150 39-162 (312)
68 1ozn_A Reticulon 4 receptor; N 99.9 1E-23 3.4E-28 187.9 18.0 201 208-417 37-240 (285)
69 3oja_A Leucine-rich immune mol 99.9 6.4E-24 2.2E-28 202.8 14.0 234 114-410 35-270 (487)
70 3o53_A Protein LRIM1, AGAP0063 99.9 8.1E-24 2.8E-28 191.3 11.3 241 10-286 30-272 (317)
71 3oja_A Leucine-rich immune mol 99.9 1E-23 3.6E-28 201.4 11.9 244 30-361 21-270 (487)
72 1wwl_A Monocyte differentiatio 99.9 7.5E-24 2.6E-28 191.1 9.0 249 111-417 41-311 (312)
73 2ca6_A RAN GTPase-activating p 99.9 6.4E-24 2.2E-28 197.6 6.3 82 329-410 244-338 (386)
74 3goz_A Leucine-rich repeat-con 99.9 2.7E-23 9.2E-28 191.5 9.3 112 18-130 2-126 (362)
75 3rfs_A Internalin B, repeat mo 99.9 2.7E-22 9.4E-27 177.1 14.7 218 116-419 22-239 (272)
76 2z62_A TOLL-like receptor 4, v 99.9 6E-22 2.1E-26 175.5 16.3 199 211-419 36-241 (276)
77 2o6q_A Variable lymphocyte rec 99.9 1.9E-21 6.3E-26 171.6 18.2 175 211-416 45-219 (270)
78 2ast_B S-phase kinase-associat 99.9 3.7E-22 1.3E-26 182.2 13.4 209 167-420 92-311 (336)
79 2z62_A TOLL-like receptor 4, v 99.9 1.7E-21 5.8E-26 172.6 16.9 209 39-265 28-238 (276)
80 2ca6_A RAN GTPase-activating p 99.9 1.3E-23 4.4E-28 195.5 3.4 280 31-387 24-340 (386)
81 3rfs_A Internalin B, repeat mo 99.9 3E-21 1E-25 170.4 16.7 189 184-420 35-223 (272)
82 2o6q_A Variable lymphocyte rec 99.9 1.9E-20 6.6E-25 165.1 20.2 203 15-265 17-219 (270)
83 1p9a_G Platelet glycoprotein I 99.9 9.4E-21 3.2E-25 168.6 17.3 201 165-415 7-208 (290)
84 3goz_A Leucine-rich repeat-con 99.9 1.1E-21 3.9E-26 180.6 9.6 71 329-399 225-306 (362)
85 1p9a_G Platelet glycoprotein I 99.8 2.6E-20 8.8E-25 165.7 17.2 205 9-265 5-209 (290)
86 1h6u_A Internalin H; cell adhe 99.8 4.6E-20 1.6E-24 165.7 16.9 194 164-416 37-231 (308)
87 4glp_A Monocyte differentiatio 99.8 9.3E-21 3.2E-25 170.7 12.0 198 205-416 93-308 (310)
88 3m19_A Variable lymphocyte rec 99.8 4.8E-20 1.7E-24 160.7 16.0 145 218-392 50-194 (251)
89 2ast_B S-phase kinase-associat 99.8 1E-20 3.5E-25 172.6 11.7 250 15-293 48-310 (336)
90 2xwt_C Thyrotropin receptor; s 99.8 6.4E-20 2.2E-24 158.7 14.6 197 39-286 31-236 (239)
91 4glp_A Monocyte differentiatio 99.8 2.1E-20 7.1E-25 168.4 11.3 234 88-392 65-309 (310)
92 1h6u_A Internalin H; cell adhe 99.8 2.3E-19 7.8E-24 161.2 17.5 195 35-290 37-231 (308)
93 2xwt_C Thyrotropin receptor; s 99.8 5.5E-20 1.9E-24 159.2 12.5 191 211-413 39-237 (239)
94 3m19_A Variable lymphocyte rec 99.8 3.1E-19 1.1E-23 155.5 15.0 160 227-417 35-194 (251)
95 2o6s_A Variable lymphocyte rec 99.8 1.2E-18 4.1E-23 147.3 11.5 155 227-419 28-182 (208)
96 2v70_A SLIT-2, SLIT homolog 2 99.8 1.2E-17 4E-22 142.2 14.4 135 228-392 33-168 (220)
97 1h6t_A Internalin B; cell adhe 99.7 1.7E-17 5.7E-22 147.7 15.3 174 185-416 41-214 (291)
98 2o6s_A Variable lymphocyte rec 99.7 5E-18 1.7E-22 143.5 10.6 161 205-403 30-190 (208)
99 4ay9_X Follicle-stimulating ho 99.7 4E-17 1.4E-21 149.4 17.4 157 91-294 13-172 (350)
100 4ay9_X Follicle-stimulating ho 99.7 4.5E-17 1.5E-21 149.1 16.7 122 17-144 12-135 (350)
101 4ezg_A Putative uncharacterize 99.7 1.6E-17 5.4E-22 139.0 12.5 154 225-417 42-196 (197)
102 3cvr_A Invasion plasmid antige 99.7 2E-17 6.8E-22 159.4 13.9 183 169-397 60-250 (571)
103 2v9t_B SLIT homolog 2 protein 99.7 5.6E-17 1.9E-21 138.1 14.4 136 227-392 32-167 (220)
104 1h6t_A Internalin B; cell adhe 99.7 4.9E-17 1.7E-21 144.6 14.0 173 36-243 43-216 (291)
105 3e6j_A Variable lymphocyte rec 99.7 9.3E-17 3.2E-21 137.6 14.4 137 227-394 40-176 (229)
106 2xot_A Amphoterin-induced prot 99.7 4.1E-17 1.4E-21 149.9 12.5 157 228-415 40-202 (361)
107 1m9s_A Internalin B; cell inva 99.7 9.1E-17 3.1E-21 156.5 15.2 174 185-416 38-211 (605)
108 3sb4_A Hypothetical leucine ri 99.7 1.1E-16 3.9E-21 145.1 14.5 132 3-145 12-156 (329)
109 1xeu_A Internalin C; cellular 99.7 5.5E-17 1.9E-21 142.1 11.5 59 329-391 128-186 (263)
110 1m9s_A Internalin B; cell inva 99.7 9.4E-17 3.2E-21 156.4 12.7 171 37-242 41-212 (605)
111 2v9t_B SLIT homolog 2 protein 99.7 1.7E-16 5.8E-21 135.1 12.7 123 214-366 43-165 (220)
112 3e6j_A Variable lymphocyte rec 99.7 4.3E-16 1.5E-20 133.5 14.9 132 14-149 40-171 (229)
113 1dce_A Protein (RAB geranylger 99.7 2.6E-18 8.8E-23 166.3 -0.5 203 134-409 346-567 (567)
114 3cvr_A Invasion plasmid antige 99.7 4.3E-16 1.5E-20 150.1 14.7 193 40-275 60-253 (571)
115 2v70_A SLIT-2, SLIT homolog 2 99.7 4.1E-16 1.4E-20 132.7 12.9 155 230-417 14-168 (220)
116 4ezg_A Putative uncharacterize 99.7 1E-15 3.4E-20 128.0 13.3 131 11-150 41-172 (197)
117 2xot_A Amphoterin-induced prot 99.7 5.9E-16 2E-20 142.2 12.5 158 205-392 41-204 (361)
118 1dce_A Protein (RAB geranylger 99.6 2.5E-17 8.5E-22 159.5 1.2 176 225-419 347-550 (567)
119 1xeu_A Internalin C; cellular 99.6 5.5E-16 1.9E-20 135.7 9.2 171 12-242 17-187 (263)
120 2ell_A Acidic leucine-rich nuc 99.6 3.7E-15 1.3E-19 121.2 11.1 86 329-415 71-160 (168)
121 2ell_A Acidic leucine-rich nuc 99.6 4.3E-15 1.5E-19 120.9 10.9 135 13-150 23-160 (168)
122 4fs7_A Uncharacterized protein 99.6 6.1E-14 2.1E-18 130.4 20.1 74 329-407 320-393 (394)
123 2je0_A Acidic leucine-rich nuc 99.6 8.6E-15 2.9E-19 116.5 9.6 82 329-411 64-149 (149)
124 1w8a_A SLIT protein; signaling 99.6 1.3E-14 4.4E-19 120.6 11.0 134 253-419 10-143 (192)
125 3sb4_A Hypothetical leucine ri 99.6 1.3E-14 4.5E-19 131.5 12.0 258 13-304 48-325 (329)
126 2je0_A Acidic leucine-rich nuc 99.6 6.4E-15 2.2E-19 117.2 8.4 126 39-176 17-148 (149)
127 1w8a_A SLIT protein; signaling 99.5 3.7E-14 1.3E-18 117.9 12.2 109 228-366 30-139 (192)
128 4b8c_D Glucose-repressible alc 99.5 6.1E-15 2.1E-19 147.2 6.5 89 329-419 270-358 (727)
129 2o6r_A Variable lymphocyte rec 99.5 5.7E-14 1.9E-18 115.2 10.9 133 229-394 9-141 (177)
130 1a9n_A U2A', U2A'; complex (nu 99.5 4.1E-14 1.4E-18 115.9 9.6 136 9-149 14-152 (176)
131 1a9n_A U2A', U2A'; complex (nu 99.5 8.4E-14 2.9E-18 114.0 10.4 81 330-413 65-151 (176)
132 4fdw_A Leucine rich hypothetic 99.5 1E-12 3.6E-17 121.6 18.5 58 329-388 323-381 (401)
133 4fs7_A Uncharacterized protein 99.5 1.8E-12 6.3E-17 120.4 19.5 81 328-412 296-376 (394)
134 4fdw_A Leucine rich hypothetic 99.5 2.5E-12 8.4E-17 119.1 19.8 115 219-366 263-383 (401)
135 4gt6_A Cell surface protein; l 99.5 3.1E-12 1.1E-16 118.9 20.4 327 35-414 59-390 (394)
136 2wfh_A SLIT homolog 2 protein 99.5 2.2E-13 7.7E-18 113.1 11.0 128 17-151 13-140 (193)
137 2wfh_A SLIT homolog 2 protein 99.5 3.8E-13 1.3E-17 111.7 12.2 129 253-416 12-140 (193)
138 4b8c_D Glucose-repressible alc 99.5 6.1E-14 2.1E-18 140.0 7.7 135 132-290 219-355 (727)
139 1ds9_A Outer arm dynein; leuci 99.5 5.5E-15 1.9E-19 123.6 -0.2 132 246-416 43-186 (198)
140 2o6r_A Variable lymphocyte rec 99.5 8.8E-13 3E-17 108.0 12.9 131 15-151 8-138 (177)
141 3un9_A NLR family member X1; l 99.4 8.9E-15 3.1E-19 134.2 0.6 163 227-415 101-283 (372)
142 3g39_A Variable lymphocyte rec 99.4 7.7E-13 2.6E-17 107.4 9.6 104 312-417 14-117 (170)
143 4gt6_A Cell surface protein; l 99.4 3.5E-11 1.2E-15 111.7 20.3 327 9-389 58-390 (394)
144 2r9u_A Variable lymphocyte rec 99.4 2.4E-12 8.2E-17 104.9 9.9 104 311-416 16-119 (174)
145 1ds9_A Outer arm dynein; leuci 99.4 1.9E-14 6.3E-19 120.4 -2.8 156 12-174 16-180 (198)
146 3un9_A NLR family member X1; l 99.4 4.2E-14 1.4E-18 129.7 -0.8 86 330-415 156-252 (372)
147 2r9u_A Variable lymphocyte rec 99.2 8.2E-11 2.8E-15 95.7 10.3 86 63-150 33-118 (174)
148 3g39_A Variable lymphocyte rec 99.2 1.1E-10 3.7E-15 94.7 11.0 104 42-150 12-115 (170)
149 2ra8_A Uncharacterized protein 99.1 1.6E-10 5.5E-15 105.0 8.6 199 185-413 134-341 (362)
150 4h09_A Hypothetical leucine ri 99.1 1.6E-08 5.5E-13 93.2 22.1 59 328-387 285-343 (379)
151 2ifg_A High affinity nerve gro 99.1 3.3E-10 1.1E-14 103.3 8.8 103 312-416 13-117 (347)
152 4h09_A Hypothetical leucine ri 99.1 6.8E-09 2.3E-13 95.8 17.6 124 222-379 235-358 (379)
153 2ra8_A Uncharacterized protein 98.9 1.5E-09 5.1E-14 98.6 7.4 164 222-416 134-321 (362)
154 3e4g_A ATP synthase subunit S, 98.9 6.2E-10 2.1E-14 89.0 3.4 84 329-413 61-150 (176)
155 2ifg_A High affinity nerve gro 98.9 2.6E-09 8.8E-14 97.3 7.6 106 17-128 11-118 (347)
156 1io0_A Tropomodulin; LRR prote 98.8 3.3E-09 1.1E-13 87.1 3.7 64 329-392 93-166 (185)
157 1io0_A Tropomodulin; LRR prote 98.6 7.2E-09 2.5E-13 85.0 0.8 118 33-150 30-164 (185)
158 3e4g_A ATP synthase subunit S, 98.5 1.4E-07 4.9E-12 75.3 5.0 85 63-148 61-150 (176)
159 3rw6_A Nuclear RNA export fact 98.4 3.7E-07 1.2E-11 78.7 6.2 80 327-408 168-257 (267)
160 3rw6_A Nuclear RNA export fact 98.2 1.1E-06 3.6E-11 75.8 5.3 68 349-419 166-237 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.8 1.1E-05 3.8E-10 65.6 3.7 85 329-413 70-168 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.8 1.6E-05 5.5E-10 64.7 4.1 62 329-390 98-170 (197)
163 3rfe_A Platelet glycoprotein I 96.8 0.0026 8.8E-08 48.2 6.1 56 311-366 12-68 (130)
164 3rfe_A Platelet glycoprotein I 96.6 0.0031 1.1E-07 47.7 5.6 58 332-391 11-69 (130)
165 2lz0_A Uncharacterized protein 75.3 3.4 0.00011 29.1 4.0 47 340-387 7-53 (100)
166 2lz0_A Uncharacterized protein 68.1 6.8 0.00023 27.5 4.3 38 57-95 14-51 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.6e-46 Score=376.07 Aligned_cols=404 Identities=27% Similarity=0.384 Sum_probs=295.9
Q ss_pred CCCCCCCccCCCCCCcEEecccCCCCCCCchhhhhccccCceeecCCCcccCCCCCCCCCCCCccEEEeecccccccccc
Q 037249 2 LVGKVNPSLLDLNHLSYLGLSFNDFQGVQIPRFIGSIRNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENFL 81 (420)
Q Consensus 2 ~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 81 (420)
+.|.+|. +.++++|++|++++|.+.+. .+..+..+++|++|++++|.+.+.+|.. .+++|++|++++|.+....+.
T Consensus 212 l~~~~~~-l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~ 287 (768)
T 3rgz_A 212 FSTGIPF-LGDCSALQHLDISGNKLSGD-FSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPD 287 (768)
T ss_dssp CCSCCCB-CTTCCSCCEEECCSSCCCSC-HHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCC
T ss_pred CCCCCcc-cccCCCCCEEECcCCcCCCc-ccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCH
Confidence 3455565 88888888888888887755 6777778888888888887776555543 566666666666665544443
Q ss_pred cccC-CCcccEEEcccccCCCccchhhhhCCCCCCcEEEccCCCCC-CCCchhhccCCCCCEEEccCCcCCCCCCCCCCC
Q 037249 82 WLSG-LSFLEQLDLCYVNLSKASDWLLVANTLPSLVELRLSNCQLH-HLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGP 159 (420)
Q Consensus 82 ~~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 159 (420)
.+.. +++|++|++++|.+.... ...+..+++|++|++++|.+. .++...+..+++|++|++++|.+.. .
T Consensus 288 ~~~~~~~~L~~L~Ls~n~l~~~~--p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~-------~ 358 (768)
T 3rgz_A 288 FLSGACDTLTGLDLSGNHFYGAV--PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG-------E 358 (768)
T ss_dssp CSCTTCTTCSEEECCSSEEEECC--CGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEE-------C
T ss_pred HHHhhcCcCCEEECcCCcCCCcc--chHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCc-------c
Confidence 3433 366666666666654321 124455666666666666665 3333335666666666666665531 1
Q ss_pred CChhhhh---------------------------ccccccccccCCC--CccccccccccCCcEEeeccCcc--------
Q 037249 160 IPSWLYR---------------------------LTHFEQLSVADRP--RRIPRSMASLCNLRTIYLSGCVS-------- 202 (420)
Q Consensus 160 ~~~~l~~---------------------------~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~l~~~~~-------- 202 (420)
++..+.. +++|+.|+++++. ..+|.++..+++|+.|++++|.+
T Consensus 359 ~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l 438 (768)
T 3rgz_A 359 LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL 438 (768)
T ss_dssp CCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGG
T ss_pred ccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHH
Confidence 2333333 4456666666665 35667777888888888888754
Q ss_pred ---cceeEEEeecCcccccchhhhhcCCCCCEEECCCcccccCCccchhhccCCcEeecCCccccCccchhhhcccCccc
Q 037249 203 ---KELEILVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNGTLFEIHFVNLTKLS 279 (420)
Q Consensus 203 ---~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~ 279 (420)
+.++.|++++|.+.+..|..+..+++|+.|++++|++.+..|..+..+++|++|++++|.+++.+|. .+..+++|+
T Consensus 439 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~ 517 (768)
T 3rgz_A 439 GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK-WIGRLENLA 517 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCG-GGGGCTTCC
T ss_pred hcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCCh-HHhcCCCCC
Confidence 5678888888888888888888888888888888888877788888888888899888888877776 677888888
Q ss_pred eEeecCCccceecCCCCCCccceeeecccceeec----------------------------------------------
Q 037249 280 VSSVNENNLTLKVNHDWVPPFQLVQLGLRSFYLD---------------------------------------------- 313 (420)
Q Consensus 280 ~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~---------------------------------------------- 313 (420)
+|++++|.+....+..+.....++.+.+..+.+.
T Consensus 518 ~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (768)
T 3rgz_A 518 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQ 597 (768)
T ss_dssp EEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECT
T ss_pred EEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccc
Confidence 8888888888777777777777775555444221
Q ss_pred -----------------cccCccccccccc--ccCCccEEEccCCccccCCcccccccccccEEeccCCccccccCcccc
Q 037249 314 -----------------LFNNSFSGSISHF--CYQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIPISLK 374 (420)
Q Consensus 314 -----------------l~~~~~~~~~~~~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~ 374 (420)
++.+.+.+..+.. .+++|++|++++|++++.+|..++.+++|+.|++++|.+++.+|..++
T Consensus 598 ~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~ 677 (768)
T 3rgz_A 598 GIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG 677 (768)
T ss_dssp TCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred cccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHh
Confidence 0011111222211 346899999999999999999999999999999999999999999999
Q ss_pred ccCCCceEeCCCcccccccchhhhhcCCCceEEEeeccccccCCCC
Q 037249 375 NCTALMILDVGENEFVGNISTWFGERFSRVVVLILRSNQFRGLLPT 420 (420)
Q Consensus 375 ~l~~L~~L~l~~n~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~ 420 (420)
.+++|++||+++|++++.+|..+.. +++|++|++++|+++|.||.
T Consensus 678 ~L~~L~~LdLs~N~l~g~ip~~l~~-l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 678 DLRGLNILDLSSNKLDGRIPQAMSA-LTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp GCTTCCEEECCSSCCEECCCGGGGG-CCCCSEEECCSSEEEEECCS
T ss_pred CCCCCCEEECCCCcccCcCChHHhC-CCCCCEEECcCCcccccCCC
Confidence 9999999999999999999999997 99999999999999999994
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.5e-44 Score=365.07 Aligned_cols=398 Identities=26% Similarity=0.331 Sum_probs=262.2
Q ss_pred CCCccCCCCCCcEEecccCCCCCCCchh--hhhccccCceeecCCCcccCCCCCCC-CCCCCccEEEeeccccccccccc
Q 037249 6 VNPSLLDLNHLSYLGLSFNDFQGVQIPR--FIGSIRNLRYLNLSDTQFVGMIPPPL-GNLSNLQSLDLSLNYLYVENFLW 82 (420)
Q Consensus 6 l~~~~~~~~~L~~L~l~~~~i~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~ 82 (420)
+|+.+.++++|++|++++|.+.+. ++. .++++++|++|++++|.+.+..|..+ .++++|++|++++|.+....+..
T Consensus 92 l~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 170 (768)
T 3rgz_A 92 SVSGFKCSASLTSLDLSRNSLSGP-VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVG 170 (768)
T ss_dssp CCCCCCCCTTCCEEECCSSEEEEE-GGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHH
T ss_pred CchhhccCCCCCEEECCCCcCCCc-CCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChh
Confidence 447889999999999999988754 565 78889999999999998887777655 78889999999998887666554
Q ss_pred ---ccCCCcccEEEcccccCCCccchhhhhCCCCCCcEEEccCCCCCCCCchhhccCCCCCEEEccCCcCCCCCCCCCCC
Q 037249 83 ---LSGLSFLEQLDLCYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGP 159 (420)
Q Consensus 83 ---~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 159 (420)
+.++++|++|++++|.+..... ...+++|++|++++|.+....+. +..+++|++|++++|.++ +.
T Consensus 171 ~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~-------~~ 238 (768)
T 3rgz_A 171 WVLSDGCGELKHLAISGNKISGDVD----VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLS-------GD 238 (768)
T ss_dssp HHHTTCCTTCCEEECCSSEEESCCB----CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCC-------SC
T ss_pred hhhhccCCCCCEEECCCCcccccCC----cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCC-------Cc
Confidence 6777888888888777665432 25677777777777777665553 677777777777777764 22
Q ss_pred CChhhhhccccccccccCCC--CccccccccccCCcEEeeccCcc------------cceeEEEeecCcccccchhhhhc
Q 037249 160 IPSWLYRLTHFEQLSVADRP--RRIPRSMASLCNLRTIYLSGCVS------------KELEILVLQSSSISGHLTEQIGH 225 (420)
Q Consensus 160 ~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~l~~~~~------------~~l~~L~l~~~~~~~~~~~~l~~ 225 (420)
.+..+..+++|+.|+++++. ...|.. .+++|++|++++|.+ +.++.|++++|.+++..+..++.
T Consensus 239 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~ 316 (768)
T 3rgz_A 239 FSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 316 (768)
T ss_dssp HHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGG
T ss_pred ccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhc
Confidence 45566666666666666665 122221 444555555554432 33444555555544444444444
Q ss_pred CCCCCEEECCCccc-------------------------ccCCccchhhcc-CCcEeecCCccccCccchhhhcc--cCc
Q 037249 226 FKNLDTLDLGNNSI-------------------------VGLVPLSLNELS-KLRILHLPDNKLNGTLFEIHFVN--LTK 277 (420)
Q Consensus 226 ~~~L~~L~l~~~~~-------------------------~~~~~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~~--~~~ 277 (420)
+++|+.|++++|.+ .+..|..+..++ +|++|++++|.+++..+. .+.. +++
T Consensus 317 l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~-~~~~~~~~~ 395 (768)
T 3rgz_A 317 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP-NLCQNPKNT 395 (768)
T ss_dssp CTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCT-TTTCSTTCC
T ss_pred CCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcCh-hhhhcccCC
Confidence 44555555554444 433344444443 455555555544433333 1111 445
Q ss_pred cceEeecCCccceecCCCCCCccceeeecccce-----------------eeccccCccccccccc--ccCCccEEEccC
Q 037249 278 LSVSSVNENNLTLKVNHDWVPPFQLVQLGLRSF-----------------YLDLFNNSFSGSISHF--CYQNLMLLTLSN 338 (420)
Q Consensus 278 L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------~l~l~~~~~~~~~~~~--~~~~L~~L~l~~ 338 (420)
|+.|++++|.+....+..+.....++.+.+..+ .+++++|.+.+..+.. .+++|++|++++
T Consensus 396 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 475 (768)
T 3rgz_A 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 475 (768)
T ss_dssp CCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred ccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecC
Confidence 555555555555554444545555555544443 4555666666555543 457778888888
Q ss_pred CccccCCcccccccccccEEeccCCccccccCccccccCCCceEeCCCcccccccchhhhhcCCCceEEEeeccccccCC
Q 037249 339 NKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVGENEFVGNISTWFGERFSRVVVLILRSNQFRGLL 418 (420)
Q Consensus 339 ~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~ 418 (420)
|++++.+|..+..+++|++|++++|++.+.+|..++.+++|++|++++|++++.+|..+.. +++|++|++++|+++|.|
T Consensus 476 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~-l~~L~~L~Ls~N~l~g~i 554 (768)
T 3rgz_A 476 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD-CRSLIWLDLNTNLFNGTI 554 (768)
T ss_dssp SCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGG-CTTCCEEECCSSEEESBC
T ss_pred CcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcC-CCCCCEEECCCCccCCcC
Confidence 8877777777888888888888888888778888888888888888888888788877776 888888888888888888
Q ss_pred CC
Q 037249 419 PT 420 (420)
Q Consensus 419 ~~ 420 (420)
|.
T Consensus 555 p~ 556 (768)
T 3rgz_A 555 PA 556 (768)
T ss_dssp CG
T ss_pred Ch
Confidence 73
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.4e-43 Score=347.38 Aligned_cols=408 Identities=20% Similarity=0.191 Sum_probs=263.0
Q ss_pred CCCCCccCCCCCCcEEecccCCCCCCCchhhhhccccCceeecCCCcccCCCCCCCCCCCCccEEEeecccccccccccc
Q 037249 4 GKVNPSLLDLNHLSYLGLSFNDFQGVQIPRFIGSIRNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENFLWL 83 (420)
Q Consensus 4 ~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 83 (420)
+..|.+|.++++|++|++++|.+... .+..|+.+++|++|++++|.+....|.+|+++++|++|++++|.+....+..+
T Consensus 47 ~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~ 125 (606)
T 3t6q_A 47 TIQNTTFSRLINLTFLDLTRCQIYWI-HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPL 125 (606)
T ss_dssp EECTTTSTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCC
T ss_pred cCChhHhccCccceEEECCCCcccee-ChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchh
Confidence 33466888899999999998888754 56778888899999999988887778888888999999999888887767778
Q ss_pred cCCCcccEEEcccccCCCccchhhhhCCCCCCcEEEccCCCCCCCCchhhccCCCCC--EEEccCCcCCCCCCCCCC---
Q 037249 84 SGLSFLEQLDLCYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPLTISNFSSLT--VLDLSFSQFDNSLIPGWG--- 158 (420)
Q Consensus 84 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~--~L~l~~~~~~~~~~~~~~--- 158 (420)
.++++|++|++++|.+..... . .+..+++|++|++++|.+..+.+..+..+++|+ +|++++|.+.......+.
T Consensus 126 ~~l~~L~~L~L~~n~l~~~~~-~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~ 203 (606)
T 3t6q_A 126 HNQKTLESLYLGSNHISSIKL-P-KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAV 203 (606)
T ss_dssp TTCTTCCEEECCSSCCCCCCC-C-TTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCE
T ss_pred ccCCcccEEECCCCcccccCc-c-cccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhcc
Confidence 888889999999888876521 1 223478888888888888877776777777777 777777765432211110
Q ss_pred ----------------------------------------------------------------CC-Chhhhhccccccc
Q 037249 159 ----------------------------------------------------------------PI-PSWLYRLTHFEQL 173 (420)
Q Consensus 159 ----------------------------------------------------------------~~-~~~l~~~~~L~~L 173 (420)
.+ +..+..+++|+.|
T Consensus 204 L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 283 (606)
T 3t6q_A 204 FQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQEL 283 (606)
T ss_dssp EEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEE
T ss_pred ccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEE
Confidence 01 1225556677777
Q ss_pred cccCCC-CccccccccccCCcEEeeccCcc-----------cceeEEEeecCcccccch-hhhhcCCCCCEEECCCcccc
Q 037249 174 SVADRP-RRIPRSMASLCNLRTIYLSGCVS-----------KELEILVLQSSSISGHLT-EQIGHFKNLDTLDLGNNSIV 240 (420)
Q Consensus 174 ~l~~~~-~~~~~~~~~~~~L~~L~l~~~~~-----------~~l~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~ 240 (420)
+++++. ..+|.++..+++|++|++++|.+ +.++.|++++|.+.+.++ ..+..+++|+.|++++|.+.
T Consensus 284 ~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 363 (606)
T 3t6q_A 284 DLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE 363 (606)
T ss_dssp ECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCC
T ss_pred eccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccc
Confidence 777776 56666777777777777777654 456666666666553332 33556666666666666665
Q ss_pred cCC--ccchhhccCCcEeecCCccccCccchhhhcccCccceEeecCCccceecCC-CCCCccceeeecccce-------
Q 037249 241 GLV--PLSLNELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLKVNH-DWVPPFQLVQLGLRSF------- 310 (420)
Q Consensus 241 ~~~--~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~~~~~~~~~~l~~~~~------- 310 (420)
+.. +..+..+++|++|++++|.+.+..+. .+..+++|+.|++++|.+....+. .+.....++.+.+..+
T Consensus 364 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 442 (606)
T 3t6q_A 364 TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE-AFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE 442 (606)
T ss_dssp EEEESTTTTTTCTTCCEEECCSCSCEEECTT-TTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCT
T ss_pred cccCcchhcccCCCCCEEECCCCcCCcCCHH-HhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCH
Confidence 543 44555666666666666665533332 455566666666666665544322 2444444443332222
Q ss_pred ----------eeccccCcccccc-c----ccccCCccEEEccCCccccCCcccccccccccEEeccCCccccccCccccc
Q 037249 311 ----------YLDLFNNSFSGSI-S----HFCYQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKN 375 (420)
Q Consensus 311 ----------~l~l~~~~~~~~~-~----~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~ 375 (420)
++++++|.+.+.. + ...+++|++|++++|++++..|..|..+++|++|++++|++++..|+.+..
T Consensus 443 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~ 522 (606)
T 3t6q_A 443 QLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH 522 (606)
T ss_dssp TTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTT
T ss_pred HHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCc
Confidence 4455555554421 1 113466666666666666555666666666666666666666666666666
Q ss_pred cCCCceEeCCCcccccccchhhhhcCCCceEEEeeccccccC
Q 037249 376 CTALMILDVGENEFVGNISTWFGERFSRVVVLILRSNQFRGL 417 (420)
Q Consensus 376 l~~L~~L~l~~n~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~ 417 (420)
++.| +|++++|++++..|..+.. +++|++|++++|+++..
T Consensus 523 l~~L-~L~L~~N~l~~~~~~~~~~-l~~L~~L~l~~N~~~c~ 562 (606)
T 3t6q_A 523 LKGI-YLNLASNHISIILPSLLPI-LSQQRTINLRQNPLDCT 562 (606)
T ss_dssp CCSC-EEECCSSCCCCCCGGGHHH-HHTSSEEECTTCCEECS
T ss_pred cccc-EEECcCCcccccCHhhccc-CCCCCEEeCCCCCcccc
Confidence 6666 6666666666555555554 66666666666666553
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5.8e-42 Score=338.58 Aligned_cols=402 Identities=19% Similarity=0.185 Sum_probs=269.5
Q ss_pred CCCCCccCCCCCCcEEecccCCCCCCCchhhhhccccCceeecCCCcccCCCCCCCCCCCCccEEEeecccccccccccc
Q 037249 4 GKVNPSLLDLNHLSYLGLSFNDFQGVQIPRFIGSIRNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENFLWL 83 (420)
Q Consensus 4 ~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 83 (420)
.++|..+.. .+++|++++|.++.. .+..++++++|++|++++|.+....|.+|+++++|++|++++|.+....+..+
T Consensus 25 ~~iP~~l~~--~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 101 (606)
T 3t6q_A 25 NEIPGTLPN--STECLEFSFNVLPTI-QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETAL 101 (606)
T ss_dssp SSCCTTSCT--TCCEEECTTCCCSEE-CTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTT
T ss_pred ccCcCCCCC--cCcEEEccCCccCcC-ChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhh
Confidence 457777754 789999999999854 47789999999999999999998889999999999999999999988888889
Q ss_pred cCCCcccEEEcccccCCCccchhhhhCCCCCCcEEEccCCCCCCCCchhhccCCCCCEEEccCCcCCCCCCCCCCCCChh
Q 037249 84 SGLSFLEQLDLCYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSW 163 (420)
Q Consensus 84 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 163 (420)
.++++|++|++++|.+..... ..+..+++|++|++++|++..+....+..+++|++|++++|.++. ..+..
T Consensus 102 ~~l~~L~~L~L~~n~i~~l~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-------~~~~~ 172 (606)
T 3t6q_A 102 SGPKALKHLFFIQTGISSIDF--IPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY-------LSKED 172 (606)
T ss_dssp SSCTTCCEEECTTSCCSCGGG--SCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCE-------ECHHH
T ss_pred cccccccEeeccccCcccCCc--chhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccc-------cChhh
Confidence 999999999999999988632 246789999999999999998754456669999999999998853 13445
Q ss_pred hhhccccc--cccccCCC-Cc-----------------------------------------------------------
Q 037249 164 LYRLTHFE--QLSVADRP-RR----------------------------------------------------------- 181 (420)
Q Consensus 164 l~~~~~L~--~L~l~~~~-~~----------------------------------------------------------- 181 (420)
+..+++|+ .|+++++. ..
T Consensus 173 ~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~ 252 (606)
T 3t6q_A 173 MSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLC 252 (606)
T ss_dssp HHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGG
T ss_pred hhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhh
Confidence 66666666 45555543 11
Q ss_pred -----------------cccccccccCCcEEeeccCcc----------cceeEEEeecCcccccchhhhhcCCCCCEEEC
Q 037249 182 -----------------IPRSMASLCNLRTIYLSGCVS----------KELEILVLQSSSISGHLTEQIGHFKNLDTLDL 234 (420)
Q Consensus 182 -----------------~~~~~~~~~~L~~L~l~~~~~----------~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 234 (420)
.+..+..+++|+.|++++|.+ +.++.|++++|.+.+..+..+..+++|+.|++
T Consensus 253 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 332 (606)
T 3t6q_A 253 EMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI 332 (606)
T ss_dssp GSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEEC
T ss_pred cCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEEC
Confidence 112244556666666666543 45666666666666666666666666777777
Q ss_pred CCcccccCC-ccchhhccCCcEeecCCccccCccc-hhhhcccCccceEeecCCccceecCCCCCCccceeeecccce--
Q 037249 235 GNNSIVGLV-PLSLNELSKLRILHLPDNKLNGTLF-EIHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLGLRSF-- 310 (420)
Q Consensus 235 ~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~-- 310 (420)
++|.+.... +..+..+++|++|++++|.+++... ...+..+++|+.|++++|.+....+..+....+++.+.+..+
T Consensus 333 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 412 (606)
T 3t6q_A 333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL 412 (606)
T ss_dssp CSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCE
T ss_pred CCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcC
Confidence 666665322 3346666777777777776653321 224666777777777777776666666666666665544433
Q ss_pred ----------------eeccccCccccccccc--ccCCccEEEccCCccccC---CcccccccccccEEeccCCcccccc
Q 037249 311 ----------------YLDLFNNSFSGSISHF--CYQNLMLLTLSNNKFTGN---LPNSLGSLTSLVSLHLHKNIFSGTI 369 (420)
Q Consensus 311 ----------------~l~l~~~~~~~~~~~~--~~~~L~~L~l~~~~l~~~---~~~~~~~~~~L~~L~l~~n~~~~~~ 369 (420)
.+++++|.+.+..+.. .+++|++|++++|++++. .+..+..+++|+.|++++|.+++..
T Consensus 413 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 492 (606)
T 3t6q_A 413 KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID 492 (606)
T ss_dssp ECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEEC
T ss_pred CCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccC
Confidence 2344444444433322 345555555555555431 1234555555555555555555455
Q ss_pred CccccccCCCceEeCCCcccccccchhhhhcCCCceEEEeeccccccCCC
Q 037249 370 PISLKNCTALMILDVGENEFVGNISTWFGERFSRVVVLILRSNQFRGLLP 419 (420)
Q Consensus 370 ~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~ 419 (420)
|..++.+++|++|++++|++++..|+.+.. ++.| +|++++|++++..|
T Consensus 493 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~-l~~L-~L~L~~N~l~~~~~ 540 (606)
T 3t6q_A 493 QHAFTSLKMMNHVDLSHNRLTSSSIEALSH-LKGI-YLNLASNHISIILP 540 (606)
T ss_dssp TTTTTTCTTCCEEECCSSCCCGGGGGGGTT-CCSC-EEECCSSCCCCCCG
T ss_pred hhhhccccCCCEEECCCCccCcCChhHhCc-cccc-EEECcCCcccccCH
Confidence 555555666666666666665555555554 5566 66666666655443
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=8e-42 Score=337.58 Aligned_cols=400 Identities=18% Similarity=0.168 Sum_probs=284.2
Q ss_pred CCCccCCCCCCcEEecccCCCCCCCchhhhhccccCceeecCCCcccCCCCCCCCCCCCccEEEeecccccccccccccC
Q 037249 6 VNPSLLDLNHLSYLGLSFNDFQGVQIPRFIGSIRNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENFLWLSG 85 (420)
Q Consensus 6 l~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 85 (420)
.+.+|.++++|++|++++|.+... .+..|..+++|++|++++|.+....|.+|+++++|++|++++|.+.......+++
T Consensus 48 ~~~~~~~l~~L~~L~Ls~n~l~~i-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 126 (606)
T 3vq2_A 48 KSYSFSNFSELQWLDLSRCEIETI-EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQ 126 (606)
T ss_dssp CTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTT
T ss_pred ChhhccCCccCcEEeCCCCccccc-CHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCC
Confidence 444777888888888888777643 4556777788888888888777666777888888888888888777666666777
Q ss_pred CCcccEEEcccccCCCccchhhhhCCCCCCcEEEccCCCCCCCCchhhccCCCCC----EEEccCCcCCCCCCCCC----
Q 037249 86 LSFLEQLDLCYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPLTISNFSSLT----VLDLSFSQFDNSLIPGW---- 157 (420)
Q Consensus 86 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~----~L~l~~~~~~~~~~~~~---- 157 (420)
+++|++|++++|.+.... +...+..+++|++|++++|++..+++..+..+.+|+ ++++++|.++......+
T Consensus 127 l~~L~~L~L~~n~l~~~~-lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~ 205 (606)
T 3vq2_A 127 LITLKKLNVAHNFIHSCK-LPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK 205 (606)
T ss_dssp CTTCCEEECCSSCCCCCC-CCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCE
T ss_pred CCCCCEEeCCCCccccee-chHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCce
Confidence 888888888887776422 123566777888888887777665554443333222 34444333321100000
Q ss_pred ---------------------------------------------------------------------CCCCh------
Q 037249 158 ---------------------------------------------------------------------GPIPS------ 162 (420)
Q Consensus 158 ---------------------------------------------------------------------~~~~~------ 162 (420)
.....
T Consensus 206 L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~ 285 (606)
T 3vq2_A 206 LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLA 285 (606)
T ss_dssp EEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGT
T ss_pred eeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCC
Confidence 00000
Q ss_pred ----------------hhhhccccccccccCCC-CccccccccccCCcEEeeccC---------cccceeEEEeecCccc
Q 037249 163 ----------------WLYRLTHFEQLSVADRP-RRIPRSMASLCNLRTIYLSGC---------VSKELEILVLQSSSIS 216 (420)
Q Consensus 163 ----------------~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~~~---------~~~~l~~L~l~~~~~~ 216 (420)
.+..+++|+.|++.++. ..+| .+ .+++|+.|++++| ..+.++.|++++|.++
T Consensus 286 ~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~ 363 (606)
T 3vq2_A 286 NVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFP-TL-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALS 363 (606)
T ss_dssp TCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCC-CC-CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEE
T ss_pred CCCEEEecCccchhhhhccccccCCEEEcccccCcccc-cC-CCCccceeeccCCcCccchhhccCCCCCEEECcCCccC
Confidence 12222334444444444 3333 22 5556666666665 2357778888888877
Q ss_pred ccc--hhhhhcCCCCCEEECCCcccccCCccchhhccCCcEeecCCccccCccchhhhcccCccceEeecCCccceecCC
Q 037249 217 GHL--TEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLKVNH 294 (420)
Q Consensus 217 ~~~--~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~ 294 (420)
+.. +..+..+++|+.|++++|.+... +..+..+++|++|++++|.+.+..+...+..+++|+.|++++|.+....+.
T Consensus 364 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 442 (606)
T 3vq2_A 364 FSGCCSYSDLGTNSLRHLDLSFNGAIIM-SANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG 442 (606)
T ss_dssp EEEECCHHHHCCSCCCEEECCSCSEEEE-CCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTT
T ss_pred CCcchhhhhccCCcccEeECCCCccccc-hhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchh
Confidence 653 67788888899999988888765 567888889999999999888666645788889999999999998887777
Q ss_pred CCCCccceeeecccceeeccccCccccc-cccc--ccCCccEEEccCCccccCCcccccccccccEEeccCCccccccCc
Q 037249 295 DWVPPFQLVQLGLRSFYLDLFNNSFSGS-ISHF--CYQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIPI 371 (420)
Q Consensus 295 ~~~~~~~~~~l~~~~~~l~l~~~~~~~~-~~~~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 371 (420)
.+.....++ .+++++|.+.+. .+.. .+++|++|++++|++++..+..+..+++|++|++++|++++..|.
T Consensus 443 ~~~~l~~L~-------~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 515 (606)
T 3vq2_A 443 IFLGLTSLN-------TLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSS 515 (606)
T ss_dssp TTTTCTTCC-------EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGG
T ss_pred hhcCCCCCC-------EEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHH
Confidence 777777766 567777887763 3432 668999999999999988888999999999999999999988899
Q ss_pred cccccCCCceEeCCCcccccccchhhhhcCC-CceEEEeeccccccCCC
Q 037249 372 SLKNCTALMILDVGENEFVGNISTWFGERFS-RVVVLILRSNQFRGLLP 419 (420)
Q Consensus 372 ~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~-~L~~L~l~~~~~~~~~~ 419 (420)
.++.+++|++|++++|+++ .+|..+.. ++ +|++|++++|++....|
T Consensus 516 ~~~~l~~L~~L~l~~N~l~-~~p~~~~~-l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 516 HYNQLYSLSTLDCSFNRIE-TSKGILQH-FPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp GTTTCTTCCEEECTTSCCC-CEESCGGG-SCTTCCEEECCSCCCCCSST
T ss_pred HccCCCcCCEEECCCCcCc-ccCHhHhh-hcccCcEEEccCCCcccCCc
Confidence 9999999999999999998 66666665 76 59999999999987543
No 6
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.5e-41 Score=333.36 Aligned_cols=244 Identities=20% Similarity=0.274 Sum_probs=185.3
Q ss_pred hhhccccccccccCCC-CccccccccccCCcEEeeccCcc--------cceeEEEeecCcccccchhhhhcCCCCCEEEC
Q 037249 164 LYRLTHFEQLSVADRP-RRIPRSMASLCNLRTIYLSGCVS--------KELEILVLQSSSISGHLTEQIGHFKNLDTLDL 234 (420)
Q Consensus 164 l~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~~~~~--------~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 234 (420)
+..+++|+.|++.++. ..+|.++..+ +|++|++++|.+ +.++.|++++|.+.+..+. ..+++|+.|++
T Consensus 278 ~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l 354 (570)
T 2z63_A 278 FNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDL 354 (570)
T ss_dssp TGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEEC
T ss_pred hcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCcccccccc--ccCCCCCEEeC
Confidence 3344555555555544 4445555555 566666655543 4566666666665544433 57788888888
Q ss_pred CCcccccCC--ccchhhccCCcEeecCCccccCccchhhhcccCccceEeecCCccceecC-CCCCCccceeeeccccee
Q 037249 235 GNNSIVGLV--PLSLNELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLKVN-HDWVPPFQLVQLGLRSFY 311 (420)
Q Consensus 235 ~~~~~~~~~--~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~~~~l~~~~~~ 311 (420)
++|.+.... +..+..+++|++|++++|.+++ .+. .+..+++|+.|++++|.+....+ ..+.....++ .
T Consensus 355 ~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~-------~ 425 (570)
T 2z63_A 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI-------Y 425 (570)
T ss_dssp CSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE-EEE-EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCC-------E
T ss_pred cCCccCccccccccccccCccCEEECCCCcccc-ccc-cccccCCCCEEEccCCccccccchhhhhcCCCCC-------E
Confidence 888887653 5567788899999999998874 333 27888999999999988876654 3455556665 6
Q ss_pred eccccCccccccccc--ccCCccEEEccCCccc-cCCcccccccccccEEeccCCccccccCccccccCCCceEeCCCcc
Q 037249 312 LDLFNNSFSGSISHF--CYQNLMLLTLSNNKFT-GNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVGENE 388 (420)
Q Consensus 312 l~l~~~~~~~~~~~~--~~~~L~~L~l~~~~l~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 388 (420)
+++++|.+.+..+.. .+++|++|++++|+++ +.+|..+..+++|++|++++|.+++..|..++.+++|++|++++|+
T Consensus 426 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 505 (570)
T 2z63_A 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ 505 (570)
T ss_dssp EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCc
Confidence 777888887766644 5789999999999997 4688899999999999999999997879999999999999999999
Q ss_pred cccccchhhhhcCCCceEEEeeccccccCCCC
Q 037249 389 FVGNISTWFGERFSRVVVLILRSNQFRGLLPT 420 (420)
Q Consensus 389 ~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~ 420 (420)
+++..+..+.. +++|++|++++|++++.+|.
T Consensus 506 l~~~~~~~~~~-l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 506 LKSVPDGIFDR-LTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CSCCCTTTTTT-CTTCCEEECCSSCBCCCTTT
T ss_pred CCCCCHHHhhc-ccCCcEEEecCCcccCCCcc
Confidence 99877777775 99999999999999998873
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.9e-40 Score=331.97 Aligned_cols=407 Identities=23% Similarity=0.212 Sum_probs=221.4
Q ss_pred CCccCCCCCCcEEecccCCCCCCCchhhhhccccCceeecCCCcccCCCCCCCCCCCCccEEEeecccccccccccccCC
Q 037249 7 NPSLLDLNHLSYLGLSFNDFQGVQIPRFIGSIRNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENFLWLSGL 86 (420)
Q Consensus 7 ~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l 86 (420)
+.+|.++++|++|++++|.+... .+..++.+++|++|++++|.+....+.+|+++++|++|++++|.+.......+.++
T Consensus 42 ~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 120 (680)
T 1ziw_A 42 AANFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120 (680)
T ss_dssp GGGGGGGTTCSEEECCSSCCCCC-CTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTC
T ss_pred HHHHhCCCcCcEEECCCCccCcc-CHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHcccc
Confidence 34577777777777777766644 45566667777777777776664434456666777777777666665555556666
Q ss_pred CcccEEEcccccCCCccchhhhhCCCCCCcEEEccCCCCCCCCchhhc--cCCCCCEEEccCCcCCCCCCCCC-------
Q 037249 87 SFLEQLDLCYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPLTIS--NFSSLTVLDLSFSQFDNSLIPGW------- 157 (420)
Q Consensus 87 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~------- 157 (420)
++|++|++++|.+..... ..+..+++|++|++++|.+....+..+. .+++|++|++++|.+.......+
T Consensus 121 ~~L~~L~Ls~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 198 (680)
T 1ziw_A 121 KNLITLDLSHNGLSSTKL--GTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLF 198 (680)
T ss_dssp TTCCEEECCSSCCSCCCC--CSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEEC
T ss_pred CCCCEEECCCCcccccCc--hhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhh
Confidence 666666666665544321 1234455555555555555544433222 23444444444443322111000
Q ss_pred ---------------------------------------------------------------CCCChhhhhcccccccc
Q 037249 158 ---------------------------------------------------------------GPIPSWLYRLTHFEQLS 174 (420)
Q Consensus 158 ---------------------------------------------------------------~~~~~~l~~~~~L~~L~ 174 (420)
...+..+..+++|+.|+
T Consensus 199 ~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 278 (680)
T 1ziw_A 199 GLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFF 278 (680)
T ss_dssp EEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred hhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEee
Confidence 00112233344444444
Q ss_pred ccCCC--CccccccccccCCcEEeeccCc--------------------ccceeEEEeecCcccccchhhhhcCCCCCEE
Q 037249 175 VADRP--RRIPRSMASLCNLRTIYLSGCV--------------------SKELEILVLQSSSISGHLTEQIGHFKNLDTL 232 (420)
Q Consensus 175 l~~~~--~~~~~~~~~~~~L~~L~l~~~~--------------------~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L 232 (420)
++++. ...+.++..+++|+.|+++++. .+.++.|++++|.+.+..+..+..+++|+.|
T Consensus 279 L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 358 (680)
T 1ziw_A 279 LEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYL 358 (680)
T ss_dssp CCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEE
T ss_pred CCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEE
Confidence 44443 2223344444445555444321 1356666677777666666666666666666
Q ss_pred ECCCcc----------------------------cccCCccchhhccCCcEeecCCccccCccchhhhcccCccceEeec
Q 037249 233 DLGNNS----------------------------IVGLVPLSLNELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVN 284 (420)
Q Consensus 233 ~l~~~~----------------------------~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~ 284 (420)
++++|. +.+..+..+..+++|+.|++++|.+++.++...+.++++|+.++++
T Consensus 359 ~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls 438 (680)
T 1ziw_A 359 SLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLS 438 (680)
T ss_dssp ECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECC
T ss_pred ECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecC
Confidence 655543 3333345566677777777777777665655567777777777777
Q ss_pred CCccceecCCCCCCccceeeecccce-------------------eeccccCccccccccc--ccCCccEEEccCCcccc
Q 037249 285 ENNLTLKVNHDWVPPFQLVQLGLRSF-------------------YLDLFNNSFSGSISHF--CYQNLMLLTLSNNKFTG 343 (420)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~l~~~~~-------------------~l~l~~~~~~~~~~~~--~~~~L~~L~l~~~~l~~ 343 (420)
+|.+.......+.....++.+.+..+ .+++++|.+.+..+.. .+++|++|++++|++++
T Consensus 439 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~ 518 (680)
T 1ziw_A 439 YNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLAR 518 (680)
T ss_dssp SCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGG
T ss_pred CCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccc
Confidence 77766655555555555554444322 4555666666554432 44566666666666553
Q ss_pred CC--------cccccccccccEEeccCCccccccCccccccCCCceEeCCCcccccccchhhhhcCCCceEEEeeccccc
Q 037249 344 NL--------PNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVGENEFVGNISTWFGERFSRVVVLILRSNQFR 415 (420)
Q Consensus 344 ~~--------~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~~L~~L~l~~~~~~ 415 (420)
.. +..+..+++|+.|++++|.+....+..+..+++|++|++++|+++...+..+. .+++|++|++++|+++
T Consensus 519 ~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~l~~L~~L~L~~N~l~ 597 (680)
T 1ziw_A 519 LWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFN-NQVSLKSLNLQKNLIT 597 (680)
T ss_dssp GGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECTTSCCC
T ss_pred cchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhC-CCCCCCEEECCCCcCC
Confidence 21 11245556666666666665533233455666666666666666533333233 2566666666666555
Q ss_pred cC
Q 037249 416 GL 417 (420)
Q Consensus 416 ~~ 417 (420)
+.
T Consensus 598 ~~ 599 (680)
T 1ziw_A 598 SV 599 (680)
T ss_dssp BC
T ss_pred cc
Confidence 43
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.3e-40 Score=328.80 Aligned_cols=399 Identities=19% Similarity=0.205 Sum_probs=280.1
Q ss_pred CCCCCccCCCCCCcEEecccCCCCCCCchhhhhccccCceeecCCCcccCCCCCCCCCCCCccEEEeecccccccccccc
Q 037249 4 GKVNPSLLDLNHLSYLGLSFNDFQGVQIPRFIGSIRNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENFLWL 83 (420)
Q Consensus 4 ~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 83 (420)
..+|..+. +++++|++++|.++.. .+..+..+++|++|++++|.++...|.+|.++++|++|++++|.+....+..+
T Consensus 24 ~~ip~~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~ 100 (606)
T 3vq2_A 24 SKVPDDIP--SSTKNIDLSFNPLKIL-KSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSF 100 (606)
T ss_dssp SSCCTTSC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSS
T ss_pred ccCCCCCC--CCcCEEECCCCCcCEe-ChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhc
Confidence 45777665 7899999999999854 45578999999999999999998788899999999999999999998888889
Q ss_pred cCCCcccEEEcccccCCCccchhhhhCCCCCCcEEEccCCCCCCCC-chhhccCCCCCEEEccCCcCCCCCCCCCC----
Q 037249 84 SGLSFLEQLDLCYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLP-PLTISNFSSLTVLDLSFSQFDNSLIPGWG---- 158 (420)
Q Consensus 84 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~---- 158 (420)
+++++|++|++++|.+...+. ..++.+++|++|++++|.+.... +..+.++++|++|++++|.++......+.
T Consensus 101 ~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 178 (606)
T 3vq2_A 101 SGLTSLENLVAVETKLASLES--FPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRE 178 (606)
T ss_dssp TTCTTCCEEECTTSCCCCSSS--SCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHH
T ss_pred CCcccCCEEEccCCccccccc--cccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhc
Confidence 999999999999999987753 24788999999999999998643 55789999999999999988643221110
Q ss_pred ----------------CCChhhhhccccccccccCCCC------------------------------------------
Q 037249 159 ----------------PIPSWLYRLTHFEQLSVADRPR------------------------------------------ 180 (420)
Q Consensus 159 ----------------~~~~~l~~~~~L~~L~l~~~~~------------------------------------------ 180 (420)
.++.......+|+.|+++++..
T Consensus 179 L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l 258 (606)
T 3vq2_A 179 NPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGL 258 (606)
T ss_dssp CTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTG
T ss_pred cccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhh
Confidence 0111111112444444444320
Q ss_pred -----------------ccccccccccCCcEEeeccCcc---------cceeEEEeecCcccccchh-------------
Q 037249 181 -----------------RIPRSMASLCNLRTIYLSGCVS---------KELEILVLQSSSISGHLTE------------- 221 (420)
Q Consensus 181 -----------------~~~~~~~~~~~L~~L~l~~~~~---------~~l~~L~l~~~~~~~~~~~------------- 221 (420)
.....+..+++|+.|+++++.+ +.++.|++++|.+. .+|.
T Consensus 259 ~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~-~lp~~~l~~L~~L~l~~ 337 (606)
T 3vq2_A 259 CDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLK-QFPTLDLPFLKSLTLTM 337 (606)
T ss_dssp GGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCS-SCCCCCCSSCCEEEEES
T ss_pred hhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCc-ccccCCCCccceeeccC
Confidence 0000133345555555555433 24555666666552 3331
Q ss_pred -------hhhcCCCCCEEECCCcccccC--CccchhhccCCcEeecCCccccCccchhhhcccCccceEeecCCccceec
Q 037249 222 -------QIGHFKNLDTLDLGNNSIVGL--VPLSLNELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLKV 292 (420)
Q Consensus 222 -------~l~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~ 292 (420)
.+..+++|+.|++++|.+... .+..+..+++|++|++++|.++ .++ ..+..+++|+.|++++|.+....
T Consensus 338 n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~-~~~~~l~~L~~L~l~~n~l~~~~ 415 (606)
T 3vq2_A 338 NKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMS-ANFMGLEELQHLDFQHSTLKRVT 415 (606)
T ss_dssp CSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EEC-CCCTTCTTCCEEECTTSEEESTT
T ss_pred CcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cch-hhccCCCCCCeeECCCCccCCcc
Confidence 233444555555555554433 1344555556666666666554 233 24555666666666666655544
Q ss_pred C-CCCCCccceeeecccceeeccccCccccccccc--ccCCccEEEccCCcccc-CCcccccccccccEEeccCCccccc
Q 037249 293 N-HDWVPPFQLVQLGLRSFYLDLFNNSFSGSISHF--CYQNLMLLTLSNNKFTG-NLPNSLGSLTSLVSLHLHKNIFSGT 368 (420)
Q Consensus 293 ~-~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~--~~~~L~~L~l~~~~l~~-~~~~~~~~~~~L~~L~l~~n~~~~~ 368 (420)
+ ..+.....++ .+++++|.+.+..+.. .+++|++|++++|++++ ..|..+..+++|++|++++|.+++.
T Consensus 416 ~~~~~~~l~~L~-------~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 488 (606)
T 3vq2_A 416 EFSAFLSLEKLL-------YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQI 488 (606)
T ss_dssp TTTTTTTCTTCC-------EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE
T ss_pred ChhhhhccccCC-------EEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCcc
Confidence 4 3444444444 5677777777766543 56889999999999886 3678888999999999999999877
Q ss_pred cCccccccCCCceEeCCCcccccccchhhhhcCCCceEEEeeccccccCCC
Q 037249 369 IPISLKNCTALMILDVGENEFVGNISTWFGERFSRVVVLILRSNQFRGLLP 419 (420)
Q Consensus 369 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~ 419 (420)
.|..++.+++|++|++++|++++..|..+.. +++|++|++++|+++ .+|
T Consensus 489 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~l~~N~l~-~~p 537 (606)
T 3vq2_A 489 SWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQ-LYSLSTLDCSFNRIE-TSK 537 (606)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCEEGGGTTT-CTTCCEEECTTSCCC-CEE
T ss_pred ChhhhcccccCCEEECCCCcCCCcCHHHccC-CCcCCEEECCCCcCc-ccC
Confidence 7888899999999999999998888888876 899999999999887 454
No 9
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.1e-39 Score=326.54 Aligned_cols=400 Identities=19% Similarity=0.196 Sum_probs=292.5
Q ss_pred CCCCCccCCCCCCcEEecccCCCCCCCchhhhhccccCceeecCCCcccCCCCCCCCCCCCccEEEeecccccccccccc
Q 037249 4 GKVNPSLLDLNHLSYLGLSFNDFQGVQIPRFIGSIRNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENFLWL 83 (420)
Q Consensus 4 ~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 83 (420)
.++|+.+. +++++|++++|.++.. .+..+.++++|++|++++|.+....|.+++++++|++|++++|.+...+...+
T Consensus 17 ~~ip~~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~ 93 (680)
T 1ziw_A 17 TQVPDDLP--TNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTF 93 (680)
T ss_dssp SSCCSCSC--TTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTT
T ss_pred cccccccC--CCCcEEECCCCCCCCc-CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhh
Confidence 45787765 7999999999999865 55678999999999999999998888889999999999999999988888789
Q ss_pred cCCCcccEEEcccccCCCccchhhhhCCCCCCcEEEccCCCCCCCCchhhccCCCCCEEEccCCcCCCCCCCCCCCCChh
Q 037249 84 SGLSFLEQLDLCYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSW 163 (420)
Q Consensus 84 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 163 (420)
+++++|++|++++|.+...+. ..+..+++|++|++++|.+....+..+..+++|++|++++|.++. ..+..
T Consensus 94 ~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-------~~~~~ 164 (680)
T 1ziw_A 94 AFCTNLTELHLMSNSIQKIKN--NPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA-------LKSEE 164 (680)
T ss_dssp TTCTTCSEEECCSSCCCCCCS--CTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCC-------BCHHH
T ss_pred ccCCCCCEEECCCCccCccCh--hHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccc-------cCHHH
Confidence 999999999999999877642 356789999999999999998888788999999999999998854 12333
Q ss_pred hh--hccccccccccCCC--Cccccccccc---------------------------cCCcEEeeccCcc----------
Q 037249 164 LY--RLTHFEQLSVADRP--RRIPRSMASL---------------------------CNLRTIYLSGCVS---------- 202 (420)
Q Consensus 164 l~--~~~~L~~L~l~~~~--~~~~~~~~~~---------------------------~~L~~L~l~~~~~---------- 202 (420)
+. .+++|+.|+++++. ...+..+..+ ++|+.|++++|.+
T Consensus 165 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~ 244 (680)
T 1ziw_A 165 LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG 244 (680)
T ss_dssp HGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGG
T ss_pred hhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhc
Confidence 33 45889999999886 3334445444 4566666666643
Q ss_pred ---cceeEEEeecCcccccchhhhhcCCCCCEEECCCcccccCCccchhhccCCcEeecCCccccCc--------cchhh
Q 037249 203 ---KELEILVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNGT--------LFEIH 271 (420)
Q Consensus 203 ---~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~--------~~~~~ 271 (420)
+.++.|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|...+. +....
T Consensus 245 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~ 324 (680)
T 1ziw_A 245 LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS 324 (680)
T ss_dssp GGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTT
T ss_pred cCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhh
Confidence 2378888888888877777788888888888888888777666777777777777776543321 11124
Q ss_pred hcccCccceEeecCCccceecCCCCCCccceeeecccce---------------------eeccccCccccccccc--cc
Q 037249 272 FVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLGLRSF---------------------YLDLFNNSFSGSISHF--CY 328 (420)
Q Consensus 272 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~---------------------~l~l~~~~~~~~~~~~--~~ 328 (420)
+..+++|+.+++++|.+....+..+.....++.+.+..+ .+++++|.+.+..+.. .+
T Consensus 325 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l 404 (680)
T 1ziw_A 325 FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWL 404 (680)
T ss_dssp TTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTC
T ss_pred cccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCC
Confidence 566778888888888777776666666666666665432 3455666666554432 44
Q ss_pred CCccEEEccCCccccCCc-ccccccccccEEeccCCccc--------------------------cccCccccccCCCce
Q 037249 329 QNLMLLTLSNNKFTGNLP-NSLGSLTSLVSLHLHKNIFS--------------------------GTIPISLKNCTALMI 381 (420)
Q Consensus 329 ~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~n~~~--------------------------~~~~~~l~~l~~L~~ 381 (420)
++|++|++++|++++.++ ..+..+++|++|++++|.+. +..|..+..+++|++
T Consensus 405 ~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~ 484 (680)
T 1ziw_A 405 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTI 484 (680)
T ss_dssp TTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCE
T ss_pred CCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCE
Confidence 666666666666654333 45555555555555555543 244566677777777
Q ss_pred EeCCCcccccccchhhhhcCCCceEEEeecccccc
Q 037249 382 LDVGENEFVGNISTWFGERFSRVVVLILRSNQFRG 416 (420)
Q Consensus 382 L~l~~n~~~~~~~~~l~~~~~~L~~L~l~~~~~~~ 416 (420)
|++++|++++..+..+.. +++|++|++++|++++
T Consensus 485 L~Ls~N~l~~i~~~~~~~-l~~L~~L~Ls~N~l~~ 518 (680)
T 1ziw_A 485 LDLSNNNIANINDDMLEG-LEKLEILDLQHNNLAR 518 (680)
T ss_dssp EECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCGG
T ss_pred EECCCCCCCcCChhhhcc-ccccCEEeCCCCCccc
Confidence 777777777555555554 7778888888887764
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.5e-40 Score=328.46 Aligned_cols=350 Identities=16% Similarity=0.225 Sum_probs=229.9
Q ss_pred chhhhhccccCceeecCCCcccCC-----------------CCCCCC--CCCCccEEEeecccccccccccccCCCcccE
Q 037249 31 IPRFIGSIRNLRYLNLSDTQFVGM-----------------IPPPLG--NLSNLQSLDLSLNYLYVENFLWLSGLSFLEQ 91 (420)
Q Consensus 31 ~~~~~~~l~~L~~L~l~~~~~~~~-----------------~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 91 (420)
+|..++++++|++|++++|.+++. +|..++ ++++|++|++++|.+....+..+.++++|+.
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 455666777777777777777654 677777 7777777777777766666666777777777
Q ss_pred EEccccc-CCC--ccchhhh---hCCCCCCcEEEccCCCCCCCCc-hhhccCCCCCEEEccCCcCCCCCCCCCCCCChhh
Q 037249 92 LDLCYVN-LSK--ASDWLLV---ANTLPSLVELRLSNCQLHHLPP-LTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSWL 164 (420)
Q Consensus 92 L~l~~~~-~~~--~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l 164 (420)
|++++|. +.. .+..... +..+++|++|++++|++..++. ..+..+++|++|++++|.+. +.++ .+
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~-------g~ip-~~ 349 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE-------GKLP-AF 349 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCE-------EECC-CC
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCc-------cchh-hh
Confidence 7777776 543 2221111 1233777777777777774443 25677777777777777764 1244 56
Q ss_pred hhccccccccccCCC-CccccccccccC-CcEEeeccCcccceeEEEeecCcccccchhhhhcC--CCCCEEECCCcccc
Q 037249 165 YRLTHFEQLSVADRP-RRIPRSMASLCN-LRTIYLSGCVSKELEILVLQSSSISGHLTEQIGHF--KNLDTLDLGNNSIV 240 (420)
Q Consensus 165 ~~~~~L~~L~l~~~~-~~~~~~~~~~~~-L~~L~l~~~~~~~l~~L~l~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~ 240 (420)
..+++|+.|+++++. ..+|.++..+++ |+.|++++|.+ + .+|..+... ++|+.|++++|.+.
T Consensus 350 ~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l-------------~-~lp~~~~~~~l~~L~~L~Ls~N~l~ 415 (636)
T 4eco_A 350 GSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKL-------------K-YIPNIFDAKSVSVMSAIDFSYNEIG 415 (636)
T ss_dssp EEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCC-------------S-SCCSCCCTTCSSCEEEEECCSSCTT
T ss_pred CCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcC-------------c-ccchhhhhcccCccCEEECcCCcCC
Confidence 666777777777766 556666777776 77777766654 3 233333333 36777777777776
Q ss_pred cCCccchh-------hccCCcEeecCCccccCccchhhhcccCccceEeecCCccceecCCCCCCcc-------ceeeec
Q 037249 241 GLVPLSLN-------ELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLKVNHDWVPPF-------QLVQLG 306 (420)
Q Consensus 241 ~~~~~~~~-------~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~-------~~~~l~ 306 (420)
+..|..+. .+++|++|++++|.++ .++...+..+++|+.|++++|.+.......+.... .++
T Consensus 416 ~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~--- 491 (636)
T 4eco_A 416 SVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLT--- 491 (636)
T ss_dssp TTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCC---
T ss_pred CcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCcc---
Confidence 66555555 5567777777777766 45554555677777777777776633333322111 233
Q ss_pred ccceeeccccCccccccccc---ccCCccEEEccCCccccCCcccccccccccEEec------cCCccccccCccccccC
Q 037249 307 LRSFYLDLFNNSFSGSISHF---CYQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHL------HKNIFSGTIPISLKNCT 377 (420)
Q Consensus 307 ~~~~~l~l~~~~~~~~~~~~---~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l------~~n~~~~~~~~~l~~l~ 377 (420)
.+++++|.++...... .+++|++|++++|++++ +|..+..+++|+.|++ ++|.+.+.+|..+..++
T Consensus 492 ----~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~ 566 (636)
T 4eco_A 492 ----SIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCP 566 (636)
T ss_dssp ----EEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCS
T ss_pred ----EEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCC
Confidence 5566666666443332 45788888888888885 7777888888888888 45666777888888888
Q ss_pred CCceEeCCCcccccccchhhhhcCCCceEEEeeccccc
Q 037249 378 ALMILDVGENEFVGNISTWFGERFSRVVVLILRSNQFR 415 (420)
Q Consensus 378 ~L~~L~l~~n~~~~~~~~~l~~~~~~L~~L~l~~~~~~ 415 (420)
+|++|++++|++ +.+|..+. ++|++|++++|+++
T Consensus 567 ~L~~L~Ls~N~l-~~ip~~~~---~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 567 SLTQLQIGSNDI-RKVNEKIT---PNISVLDIKDNPNI 600 (636)
T ss_dssp SCCEEECCSSCC-CBCCSCCC---TTCCEEECCSCTTC
T ss_pred CCCEEECCCCcC-CccCHhHh---CcCCEEECcCCCCc
Confidence 888888888888 46666543 68888888888764
No 11
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=4.3e-40 Score=321.43 Aligned_cols=396 Identities=20% Similarity=0.239 Sum_probs=282.5
Q ss_pred CCCCCccCCCCCCcEEecccCCCCCCCchhhhhccccCceeecCCCcccCCCCCCCCCCCCccEEEeecccccccccccc
Q 037249 4 GKVNPSLLDLNHLSYLGLSFNDFQGVQIPRFIGSIRNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENFLWL 83 (420)
Q Consensus 4 ~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 83 (420)
.++|+.+. ++|++|++++|.++.. .+..+..+++|++|++++|++....|.+|.++++|++|++++|.+.......+
T Consensus 18 ~~ip~~~~--~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 94 (549)
T 2z81_A 18 TSIPSGLT--AAMKSLDLSFNKITYI-GHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWF 94 (549)
T ss_dssp SSCCSCCC--TTCCEEECCSSCCCEE-CSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHH
T ss_pred ccccccCC--CCccEEECcCCccCcc-ChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHh
Confidence 35676654 6888888888887744 45677888888888888888887777788888888888888888887777778
Q ss_pred cCCCcccEEEcccccCCCccchhhhhCCCCCCcEEEccCCC-CCCCCchhhccCCCCCEEEccCCcCCCCCCCCCCC---
Q 037249 84 SGLSFLEQLDLCYVNLSKASDWLLVANTLPSLVELRLSNCQ-LHHLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGP--- 159 (420)
Q Consensus 84 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~--- 159 (420)
+++++|++|++++|.+..... ...+..+++|++|++++|. +..+++..+..+++|++|++++|.+.......+..
T Consensus 95 ~~l~~L~~L~Ls~n~l~~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 173 (549)
T 2z81_A 95 GPLSSLKYLNLMGNPYQTLGV-TSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRD 173 (549)
T ss_dssp TTCTTCCEEECTTCCCSSSCS-SCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSE
T ss_pred ccCCCCcEEECCCCcccccch-hhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhcccc
Confidence 888888888888888775421 1246678888888888887 55555556778888888888888775322221111
Q ss_pred -------------CChh-hhhccccccccccCCC-Ccc---ccc-----------------------------cccccCC
Q 037249 160 -------------IPSW-LYRLTHFEQLSVADRP-RRI---PRS-----------------------------MASLCNL 192 (420)
Q Consensus 160 -------------~~~~-l~~~~~L~~L~l~~~~-~~~---~~~-----------------------------~~~~~~L 192 (420)
++.+ +..+++|+.|+++++. ... +.. +..+++|
T Consensus 174 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L 253 (549)
T 2z81_A 174 IHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL 253 (549)
T ss_dssp EEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTC
T ss_pred CceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccc
Confidence 1112 2335677777776665 211 111 1112233
Q ss_pred cEEeeccCcc----------------------------------------------cceeEEEeecCcccccchhhhhcC
Q 037249 193 RTIYLSGCVS----------------------------------------------KELEILVLQSSSISGHLTEQIGHF 226 (420)
Q Consensus 193 ~~L~l~~~~~----------------------------------------------~~l~~L~l~~~~~~~~~~~~l~~~ 226 (420)
+.+++++|.+ ..++.+++++|.+.......+..+
T Consensus 254 ~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l 333 (549)
T 2z81_A 254 SEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHL 333 (549)
T ss_dssp CEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHC
T ss_pred cccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcC
Confidence 3333332211 245666777776664433444678
Q ss_pred CCCCEEECCCcccccCCc---cchhhccCCcEeecCCccccCccc-hhhhcccCccceEeecCCccceecCCCCCCccce
Q 037249 227 KNLDTLDLGNNSIVGLVP---LSLNELSKLRILHLPDNKLNGTLF-EIHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQL 302 (420)
Q Consensus 227 ~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~ 302 (420)
++|+.|++++|.+.+..+ ..++.+++|++|++++|.+++..+ ...+..+++|+.|++++|.+.. .+..+.....+
T Consensus 334 ~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~~L 412 (549)
T 2z81_A 334 KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MPDSCQWPEKM 412 (549)
T ss_dssp TTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC-CCSCCCCCTTC
T ss_pred ccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCcc-CChhhcccccc
Confidence 999999999999887543 346778899999999999874332 1357889999999999998874 34444445555
Q ss_pred eeecccceeeccccCcccccccccccCCccEEEccCCccccCCcccccccccccEEeccCCccccccCccccccCCCceE
Q 037249 303 VQLGLRSFYLDLFNNSFSGSISHFCYQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMIL 382 (420)
Q Consensus 303 ~~l~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 382 (420)
+ ++++++|.+.+... ..+++|++|++++|++++. +..+++|++|++++|+++ .+|. ...+++|++|
T Consensus 413 ~-------~L~Ls~N~l~~l~~-~~~~~L~~L~Ls~N~l~~~----~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L 478 (549)
T 2z81_A 413 R-------FLNLSSTGIRVVKT-CIPQTLEVLDVSNNNLDSF----SLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVM 478 (549)
T ss_dssp C-------EEECTTSCCSCCCT-TSCTTCSEEECCSSCCSCC----CCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEE
T ss_pred c-------EEECCCCCcccccc-hhcCCceEEECCCCChhhh----cccCChhcEEECCCCccC-cCCC-cccCccCCEE
Confidence 5 67777787765433 2246899999999999853 257899999999999998 7775 5689999999
Q ss_pred eCCCcccccccchhhhhcCCCceEEEeeccccccCCC
Q 037249 383 DVGENEFVGNISTWFGERFSRVVVLILRSNQFRGLLP 419 (420)
Q Consensus 383 ~l~~n~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~ 419 (420)
++++|++++..+..+.. +++|++|++++|++++..|
T Consensus 479 ~Ls~N~l~~~~~~~~~~-l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 479 KISRNQLKSVPDGIFDR-LTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp ECCSSCCCCCCTTGGGG-CTTCCEEECCSSCBCCCHH
T ss_pred ecCCCccCCcCHHHHhc-CcccCEEEecCCCccCCCc
Confidence 99999999888877876 9999999999999988765
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=6.3e-40 Score=334.60 Aligned_cols=402 Identities=21% Similarity=0.205 Sum_probs=214.2
Q ss_pred CCccCCCCCCcEEecccCCCCCCCchhhhhccccCceeecCCCcccCCCCCCCCCCCCccEEEeeccccccccc--cccc
Q 037249 7 NPSLLDLNHLSYLGLSFNDFQGVQIPRFIGSIRNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENF--LWLS 84 (420)
Q Consensus 7 ~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--~~~~ 84 (420)
|.+|.++++|++|++++|.....-.+..+.++++|++|++++|.+....|.+|+++++|++|++++|.+....+ ..+.
T Consensus 41 ~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 120 (844)
T 3j0a_A 41 ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFR 120 (844)
T ss_dssp SSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCS
T ss_pred hhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCcccc
Confidence 44444555555555544432211113344445555555555555444444445555555555555554443221 1244
Q ss_pred CCCcccEEEcccccCCCccchhhhhCCCCCCcEEEccCCCCCCCCchhhccC--CCCCEEEccCCcCCCCCCCCCCCCCh
Q 037249 85 GLSFLEQLDLCYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPLTISNF--SSLTVLDLSFSQFDNSLIPGWGPIPS 162 (420)
Q Consensus 85 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~ 162 (420)
++++|++|++++|.+..... ...++.+++|++|++++|.+....+..+..+ ++|++|++++|.+.......+.....
T Consensus 121 ~L~~L~~L~Ls~N~l~~~~~-~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 199 (844)
T 3j0a_A 121 NLKALTRLDLSKNQIRSLYL-HPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN 199 (844)
T ss_dssp SCSSCCEEEEESCCCCCCCC-CGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSC
T ss_pred ccCCCCEEECCCCccccccc-chhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCC
Confidence 44555555555554443321 1123444555555555554444444334333 44555555555443322222211111
Q ss_pred hhhhccccccccccCCC--Ccccccc------------------------------------cc--ccCCcEEeeccCcc
Q 037249 163 WLYRLTHFEQLSVADRP--RRIPRSM------------------------------------AS--LCNLRTIYLSGCVS 202 (420)
Q Consensus 163 ~l~~~~~L~~L~l~~~~--~~~~~~~------------------------------------~~--~~~L~~L~l~~~~~ 202 (420)
.+.. ..|+.|+++++. ...+..+ .. .++|+.|++++|.+
T Consensus 200 ~~~~-~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l 278 (844)
T 3j0a_A 200 PFRN-MVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFV 278 (844)
T ss_dssp TTTT-CCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCC
T ss_pred cccc-CceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcc
Confidence 1111 136777776663 1111111 11 25677888877654
Q ss_pred -----------cceeEEEeecCcccccchhhhhcCCCCCEEECCCcccccCCccchhhccCCcEeecCCccccCccchhh
Q 037249 203 -----------KELEILVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNGTLFEIH 271 (420)
Q Consensus 203 -----------~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~ 271 (420)
+.++.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+ ++...
T Consensus 279 ~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~ 357 (844)
T 3j0a_A 279 FSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAI-IQDQT 357 (844)
T ss_dssp CEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCC-CCSSC
T ss_pred cccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCc-cChhh
Confidence 567788888888887777778888888888888888877777778888888888888888763 33336
Q ss_pred hcccCccceEeecCCccceecCCCCCCccceeeecccce-------------eeccccCccccccccc---ccCCccEEE
Q 037249 272 FVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLGLRSF-------------YLDLFNNSFSGSISHF---CYQNLMLLT 335 (420)
Q Consensus 272 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------~l~l~~~~~~~~~~~~---~~~~L~~L~ 335 (420)
+..+++|+.|++++|.+..... ...++.+.+..+ .+++++|.+.+..... .+++|++|+
T Consensus 358 ~~~l~~L~~L~Ls~N~l~~i~~-----~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~ 432 (844)
T 3j0a_A 358 FKFLEKLQTLDLRDNALTTIHF-----IPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILI 432 (844)
T ss_dssp SCSCCCCCEEEEETCCSCCCSS-----CCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEE
T ss_pred hcCCCCCCEEECCCCCCCcccC-----CCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceee
Confidence 7778888888888887664321 112222222111 2344444443322110 234444455
Q ss_pred ccCCcccc------------------------------CCcccccccccccEEeccCCccccccCccccccCCCceEeCC
Q 037249 336 LSNNKFTG------------------------------NLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVG 385 (420)
Q Consensus 336 l~~~~l~~------------------------------~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 385 (420)
+++|++++ ..+..|..+++|+.|++++|.+++..+..+..+++|++|+++
T Consensus 433 Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 512 (844)
T 3j0a_A 433 LNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLN 512 (844)
T ss_dssp EESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEE
T ss_pred CCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECC
Confidence 44444432 222345566666777777776665556666667777777777
Q ss_pred CcccccccchhhhhcCCCceEEEeeccccccCCC
Q 037249 386 ENEFVGNISTWFGERFSRVVVLILRSNQFRGLLP 419 (420)
Q Consensus 386 ~n~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~ 419 (420)
+|++++..+..+. ++|+.|++++|++++.+|
T Consensus 513 ~N~l~~l~~~~~~---~~L~~L~Ls~N~l~~~~~ 543 (844)
T 3j0a_A 513 SNRLTVLSHNDLP---ANLEILDISRNQLLAPNP 543 (844)
T ss_dssp SCCCSSCCCCCCC---SCCCEEEEEEECCCCCCS
T ss_pred CCCCCccChhhhh---ccccEEECCCCcCCCCCh
Confidence 7776654444333 566777777777766655
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-38 Score=312.82 Aligned_cols=389 Identities=22% Similarity=0.230 Sum_probs=275.5
Q ss_pred CCCCccCCCCCCcEEecccCCCCCCCchhhhhccccCceeecCCCcccCCCCCCCCCCCCccEEEeeccccccccccccc
Q 037249 5 KVNPSLLDLNHLSYLGLSFNDFQGVQIPRFIGSIRNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENFLWLS 84 (420)
Q Consensus 5 ~l~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 84 (420)
++|..+. +++++|++++|.++.. .+..+..+++|++|++++|.+....+.+|+++++|++|++++|.+....+..+.
T Consensus 21 ~ip~~l~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 97 (570)
T 2z63_A 21 KIPDNLP--FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 97 (570)
T ss_dssp SCCSSSC--SSCCEEECCSCCCCEE-CTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred ccCCCcc--ccccEEEccCCccCcc-ChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhc
Confidence 3555443 4677777777776643 344566777777777777777665566677777777777777777666666677
Q ss_pred CCCcccEEEcccccCCCccchhhhhCCCCCCcEEEccCCCCCCCC-chhhccCCCCCEEEccCCcCCCCCCCCCCCCChh
Q 037249 85 GLSFLEQLDLCYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLP-PLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSW 163 (420)
Q Consensus 85 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 163 (420)
.+++|++|++++|.+...+.. .++.+++|++|++++|.+..+. +..+.++++|++|++++|.+... .+..
T Consensus 98 ~l~~L~~L~L~~n~l~~l~~~--~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~-------~~~~ 168 (570)
T 2z63_A 98 GLSSLQKLVAVETNLASLENF--PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-------YCTD 168 (570)
T ss_dssp TCTTCCEEECTTSCCCCSTTC--SCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEE-------CGGG
T ss_pred CccccccccccccccccCCCc--cccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcccee-------cHHH
Confidence 777777777777776665431 2556777777777777776532 44567777777777777766421 1223
Q ss_pred hhhcccc----ccccccCCC------------------------------------------------------------
Q 037249 164 LYRLTHF----EQLSVADRP------------------------------------------------------------ 179 (420)
Q Consensus 164 l~~~~~L----~~L~l~~~~------------------------------------------------------------ 179 (420)
+..+++| +.++++++.
T Consensus 169 ~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~ 248 (570)
T 2z63_A 169 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 248 (570)
T ss_dssp GHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCT
T ss_pred ccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcch
Confidence 3333333 333333322
Q ss_pred -----------------------CccccccccccCCcEEeeccCccc---------ceeEEEeecCcccccchhhhhcCC
Q 037249 180 -----------------------RRIPRSMASLCNLRTIYLSGCVSK---------ELEILVLQSSSISGHLTEQIGHFK 227 (420)
Q Consensus 180 -----------------------~~~~~~~~~~~~L~~L~l~~~~~~---------~l~~L~l~~~~~~~~~~~~l~~~~ 227 (420)
...+..+..+++|+.|+++++.+. .++.|++++|.+.. ++. ..++
T Consensus 249 ~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~-l~~--~~l~ 325 (570)
T 2z63_A 249 SALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQ-FPT--LKLK 325 (570)
T ss_dssp TTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSS-CCB--CBCS
T ss_pred hhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCcccc-cCc--cccc
Confidence 122344555667777777666432 45667777777663 222 3567
Q ss_pred CCCEEECCCcccccCCccchhhccCCcEeecCCccccCccc-hhhhcccCccceEeecCCccceecCCCCCCccceeeec
Q 037249 228 NLDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNGTLF-EIHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLG 306 (420)
Q Consensus 228 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~ 306 (420)
+|+.+++++|.+....+. ..+++|++|++++|.+++... ...+..+++|+.+++++|.+...... +.....++
T Consensus 326 ~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~--- 399 (570)
T 2z63_A 326 SLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLE--- 399 (570)
T ss_dssp SCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCC---
T ss_pred ccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCC---
Confidence 777888777776655333 678899999999998874331 22677899999999999988766544 55555555
Q ss_pred ccceeeccccCcccccccc---cccCCccEEEccCCccccCCcccccccccccEEeccCCccc-cccCccccccCCCceE
Q 037249 307 LRSFYLDLFNNSFSGSISH---FCYQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFS-GTIPISLKNCTALMIL 382 (420)
Q Consensus 307 ~~~~~l~l~~~~~~~~~~~---~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L 382 (420)
.+++++|.+.+..+. ..+++|++|++++|++++..+..+..+++|++|++++|.+. +.+|..+..+++|++|
T Consensus 400 ----~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L 475 (570)
T 2z63_A 400 ----HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475 (570)
T ss_dssp ----EEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred ----EEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEE
Confidence 677778887776552 25689999999999999888899999999999999999987 5788999999999999
Q ss_pred eCCCcccccccchhhhhcCCCceEEEeeccccccCCC
Q 037249 383 DVGENEFVGNISTWFGERFSRVVVLILRSNQFRGLLP 419 (420)
Q Consensus 383 ~l~~n~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~ 419 (420)
++++|++++..|..+.. +++|++|++++|++++..|
T Consensus 476 ~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~ 511 (570)
T 2z63_A 476 DLSQCQLEQLSPTAFNS-LSSLQVLNMASNQLKSVPD 511 (570)
T ss_dssp ECTTSCCCEECTTTTTT-CTTCCEEECCSSCCSCCCT
T ss_pred ECCCCccccCChhhhhc-ccCCCEEeCCCCcCCCCCH
Confidence 99999999888888886 9999999999999988765
No 14
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.5e-38 Score=319.65 Aligned_cols=350 Identities=16% Similarity=0.211 Sum_probs=235.1
Q ss_pred chhhhhccccCceeecCCCcccC-----------------CCCCCCC--CCCCccEEEeecccccccccccccCCCcccE
Q 037249 31 IPRFIGSIRNLRYLNLSDTQFVG-----------------MIPPPLG--NLSNLQSLDLSLNYLYVENFLWLSGLSFLEQ 91 (420)
Q Consensus 31 ~~~~~~~l~~L~~L~l~~~~~~~-----------------~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 91 (420)
+|..++++++|++|++++|.+++ .+|..++ ++++|++|++++|.+....+..+.++++|+.
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 56677888888888888888876 2777777 8888888888888877666677888888888
Q ss_pred EEccccc-CCC--ccchhh----hhCCCCCCcEEEccCCCCCCCCc-hhhccCCCCCEEEccCCcCCCCCCCCCCCCChh
Q 037249 92 LDLCYVN-LSK--ASDWLL----VANTLPSLVELRLSNCQLHHLPP-LTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSW 163 (420)
Q Consensus 92 L~l~~~~-~~~--~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 163 (420)
|++++|. +.. .+.... .+..+++|++|++++|.+..++. ..+..+++|++|++++|.+.. ++ .
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~--------lp-~ 590 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH--------LE-A 590 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCB--------CC-C
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCccc--------ch-h
Confidence 8888887 553 222111 23355688888888888885554 267888888888888888752 44 6
Q ss_pred hhhccccccccccCCC-CccccccccccC-CcEEeeccCcccceeEEEeecCcccccchhhhhcCC--CCCEEECCCccc
Q 037249 164 LYRLTHFEQLSVADRP-RRIPRSMASLCN-LRTIYLSGCVSKELEILVLQSSSISGHLTEQIGHFK--NLDTLDLGNNSI 239 (420)
Q Consensus 164 l~~~~~L~~L~l~~~~-~~~~~~~~~~~~-L~~L~l~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~ 239 (420)
+..+++|+.|+++++. ..+|.++..+++ |+.|++++|.+. .+|..+...+ +|+.|++++|.+
T Consensus 591 ~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~--------------~lp~~~~~~~~~~L~~L~Ls~N~l 656 (876)
T 4ecn_A 591 FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK--------------YIPNIFNAKSVYVMGSVDFSYNKI 656 (876)
T ss_dssp CCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC--------------SCCSCCCTTCSSCEEEEECCSSCT
T ss_pred hcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC--------------cCchhhhccccCCCCEEECcCCcC
Confidence 6677888888888887 667777888887 888888877652 2233333332 366666666666
Q ss_pred ccCCcc---chh--hccCCcEeecCCccccCccchhhhcccCccceEeecCCccceecCCCCCCcc-------ceeeecc
Q 037249 240 VGLVPL---SLN--ELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLKVNHDWVPPF-------QLVQLGL 307 (420)
Q Consensus 240 ~~~~~~---~~~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~-------~~~~l~~ 307 (420)
.+..|. .+. .+++|+.|++++|.++ .++...+..+++|+.|++++|.+.......+.... .++
T Consensus 657 ~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~---- 731 (876)
T 4ecn_A 657 GSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLT---- 731 (876)
T ss_dssp TTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCC----
T ss_pred CCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCcc----
Confidence 554322 111 2336666666666666 45554455666666666666666633333222211 333
Q ss_pred cceeeccccCccccccccc---ccCCccEEEccCCccccCCcccccccccccEEeccC------CccccccCccccccCC
Q 037249 308 RSFYLDLFNNSFSGSISHF---CYQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHK------NIFSGTIPISLKNCTA 378 (420)
Q Consensus 308 ~~~~l~l~~~~~~~~~~~~---~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~------n~~~~~~~~~l~~l~~ 378 (420)
.+++++|.+....... .+++|+.|++++|++++ +|..+..+++|+.|++++ |.+.+.+|..+..+++
T Consensus 732 ---~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~ 807 (876)
T 4ecn_A 732 ---TIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPS 807 (876)
T ss_dssp ---EEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSS
T ss_pred ---EEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCC
Confidence 4555566655333322 35778888888888774 677777778888887765 6666677777777888
Q ss_pred CceEeCCCcccccccchhhhhcCCCceEEEeecccccc
Q 037249 379 LMILDVGENEFVGNISTWFGERFSRVVVLILRSNQFRG 416 (420)
Q Consensus 379 L~~L~l~~n~~~~~~~~~l~~~~~~L~~L~l~~~~~~~ 416 (420)
|+.|++++|++ +.+|..+. ++|+.|++++|++..
T Consensus 808 L~~L~Ls~N~L-~~Ip~~l~---~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 808 LIQLQIGSNDI-RKVDEKLT---PQLYILDIADNPNIS 841 (876)
T ss_dssp CCEEECCSSCC-CBCCSCCC---SSSCEEECCSCTTCE
T ss_pred CCEEECCCCCC-CccCHhhc---CCCCEEECCCCCCCc
Confidence 88888888877 56666543 478888888887643
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=7.2e-39 Score=310.58 Aligned_cols=389 Identities=20% Similarity=0.193 Sum_probs=287.2
Q ss_pred CCCCccCCCCCCcEEecccCCCCCCCchhhhhccccCceeecCCCcccCCCCCCCCCCCCccEEEeeccccccccccccc
Q 037249 5 KVNPSLLDLNHLSYLGLSFNDFQGVQIPRFIGSIRNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENFLWLS 84 (420)
Q Consensus 5 ~l~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 84 (420)
.+|..+. ++|++|++++|.+... .+..+..+++|++|++++|++++..|.+|+++++|++|++++|.+...+..
T Consensus 14 ~ip~~~~--~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--- 87 (520)
T 2z7x_B 14 HVPKDLS--QKTTILNISQNYISEL-WTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--- 87 (520)
T ss_dssp SCCCSCC--TTCSEEECCSSCCCCC-CHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC---
T ss_pred ccccccc--ccccEEECCCCccccc-ChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc---
Confidence 5888776 8999999999999865 567889999999999999999877788999999999999999998865543
Q ss_pred CCCcccEEEcccccCCCccchhhhhCCCCCCcEEEccCCCCCCCCchhhccCCCC--CEEEccCCcC--CCCCCCCCCCC
Q 037249 85 GLSFLEQLDLCYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPLTISNFSSL--TVLDLSFSQF--DNSLIPGWGPI 160 (420)
Q Consensus 85 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L--~~L~l~~~~~--~~~~~~~~~~~ 160 (420)
.+++|++|++++|.+...+ ....++.+++|++|++++|.+.. ..+..+++| ++|++++|.+ .......+..+
T Consensus 88 ~l~~L~~L~L~~N~l~~~~-~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l 163 (520)
T 2z7x_B 88 PTVNLKHLDLSFNAFDALP-ICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDF 163 (520)
T ss_dssp CCCCCSEEECCSSCCSSCC-CCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTC
T ss_pred ccCCccEEeccCCcccccc-chhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccccccccccccc
Confidence 7899999999999988643 12367789999999999999876 356778888 9999999987 33222222221
Q ss_pred -------------------ChhhhhccccccccccCCC--------CccccccccccCCcEEeeccCcc-----------
Q 037249 161 -------------------PSWLYRLTHFEQLSVADRP--------RRIPRSMASLCNLRTIYLSGCVS----------- 202 (420)
Q Consensus 161 -------------------~~~l~~~~~L~~L~l~~~~--------~~~~~~~~~~~~L~~L~l~~~~~----------- 202 (420)
...+..+++|+.++++++. ......+..+++|+.|+++++.+
T Consensus 164 ~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~ 243 (520)
T 2z7x_B 164 NTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQL 243 (520)
T ss_dssp CEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHH
T ss_pred ccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHH
Confidence 1133456778888877752 11223567778888888877654
Q ss_pred ---cceeEEEeecCcccccchhhh-----hcCCCCCEEECCCccc--------------------------ccCCccchh
Q 037249 203 ---KELEILVLQSSSISGHLTEQI-----GHFKNLDTLDLGNNSI--------------------------VGLVPLSLN 248 (420)
Q Consensus 203 ---~~l~~L~l~~~~~~~~~~~~l-----~~~~~L~~L~l~~~~~--------------------------~~~~~~~~~ 248 (420)
+.++.|++++|.+++.+|..+ +.++.|+.+++++|.+ .... ...
T Consensus 244 ~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~ 321 (520)
T 2z7x_B 244 VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPS 321 (520)
T ss_dssp HHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCS
T ss_pred hhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcccccc--chh
Confidence 268888888888876666655 5555555555544444 3221 114
Q ss_pred hccCCcEeecCCccccCccchhhhcccCccceEeecCCcccee--cCCCCCCccceeeecccceeeccccCccccccccc
Q 037249 249 ELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLK--VNHDWVPPFQLVQLGLRSFYLDLFNNSFSGSISHF 326 (420)
Q Consensus 249 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~--~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~ 326 (420)
.+++|++|++++|.+++..+. .+..+++|+.|++++|.+... .+..+.....++ .+++++|.+.+..+..
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~-------~L~Ls~N~l~~~l~~~ 393 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFE-NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQ-------QLDISQNSVSYDEKKG 393 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTT-TCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCC-------EEECCSSCCBCCGGGC
T ss_pred hCCcccEEEeECCccChhhhh-hhccCCCCCEEEccCCccCccccchHHHhhCCCCC-------EEECCCCcCCcccccc
Confidence 667788888888887765554 567788888888888877652 222333444444 6777888888744422
Q ss_pred ---ccCCccEEEccCCccccCCcccccccccccEEeccCCccccccCccccccCCCceEeCCCcccccccchh-hhhcCC
Q 037249 327 ---CYQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVGENEFVGNISTW-FGERFS 402 (420)
Q Consensus 327 ---~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~-l~~~~~ 402 (420)
.+++|++|++++|++++..+..+. ++|+.|++++|+++ .+|..+..+++|++|++++|+++ .+|.. +.. ++
T Consensus 394 ~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~-l~ 468 (520)
T 2z7x_B 394 DCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDR-LT 468 (520)
T ss_dssp SCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTT-CT
T ss_pred hhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhcc-CC
Confidence 458899999999998866666554 78999999999998 88888889999999999999998 45554 554 89
Q ss_pred CceEEEeeccccccCC
Q 037249 403 RVVVLILRSNQFRGLL 418 (420)
Q Consensus 403 ~L~~L~l~~~~~~~~~ 418 (420)
+|++|++++|++++..
T Consensus 469 ~L~~L~l~~N~~~c~c 484 (520)
T 2z7x_B 469 SLQKIWLHTNPWDCSC 484 (520)
T ss_dssp TCCEEECCSSCBCCCH
T ss_pred cccEEECcCCCCcccC
Confidence 9999999999988653
No 16
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=5.1e-38 Score=320.50 Aligned_cols=400 Identities=19% Similarity=0.187 Sum_probs=308.1
Q ss_pred CCCC-CCccCCCCCCcEEecccCCCCCCCchhhhhccccCceeecCCCcccCCCCCC--CCCCCCccEEEeecccccccc
Q 037249 3 VGKV-NPSLLDLNHLSYLGLSFNDFQGVQIPRFIGSIRNLRYLNLSDTQFVGMIPPP--LGNLSNLQSLDLSLNYLYVEN 79 (420)
Q Consensus 3 ~~~l-~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~ 79 (420)
.+.+ |.+|.++++|++|++++|.+... .|..++.+++|++|++++|.+.+..+.. ++++++|++|++++|.+....
T Consensus 61 ~~~i~~~~f~~L~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~ 139 (844)
T 3j0a_A 61 PLTIDKEAFRNLPNLRILDLGSSKIYFL-HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY 139 (844)
T ss_dssp CCEECTTTTSSCTTCCEEECTTCCCCEE-CTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCC
T ss_pred ccccCHHHhcCCCCCCEEECCCCcCccc-CHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccc
Confidence 4556 77899999999999999999854 5788999999999999999998766654 899999999999999987765
Q ss_pred c-ccccCCCcccEEEcccccCCCccchhhhhCCC--CCCcEEEccCCCCCCCCchhhccCCC------CCEEEccCCcCC
Q 037249 80 F-LWLSGLSFLEQLDLCYVNLSKASDWLLVANTL--PSLVELRLSNCQLHHLPPLTISNFSS------LTVLDLSFSQFD 150 (420)
Q Consensus 80 ~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~l~~~~~------L~~L~l~~~~~~ 150 (420)
. ..+.++++|+.|++++|.+..... ..+..+ ++|+.|+++.|.+....+..+..+++ |++|++++|.+.
T Consensus 140 ~~~~~~~L~~L~~L~Ls~N~i~~~~~--~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 217 (844)
T 3j0a_A 140 LHPSFGKLNSLKSIDFSSNQIFLVCE--HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWT 217 (844)
T ss_dssp CCGGGGTCSSCCEEEEESSCCCCCCS--GGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSS
T ss_pred cchhHhhCCCCCEEECCCCcCCeeCH--HHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCc
Confidence 4 568999999999999998876522 123333 89999999999988766655555555 999999999875
Q ss_pred CCCCCCCCCC-----------------------------Chhhhh--ccccccccccCCC--CccccccccccCCcEEee
Q 037249 151 NSLIPGWGPI-----------------------------PSWLYR--LTHFEQLSVADRP--RRIPRSMASLCNLRTIYL 197 (420)
Q Consensus 151 ~~~~~~~~~~-----------------------------~~~l~~--~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~l 197 (420)
......+... ...+.. .++|+.|+++++. ...+..+..+++|+.|++
T Consensus 218 ~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 297 (844)
T 3j0a_A 218 VDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNL 297 (844)
T ss_dssp TTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEE
T ss_pred hhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEEC
Confidence 4332211100 001112 2679999998887 345678889999999999
Q ss_pred ccCcc-----------cceeEEEeecCcccccchhhhhcCCCCCEEECCCcccccCCccchhhccCCcEeecCCccccCc
Q 037249 198 SGCVS-----------KELEILVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNGT 266 (420)
Q Consensus 198 ~~~~~-----------~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 266 (420)
++|.+ +.++.|++++|.+++..+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+++.
T Consensus 298 ~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i 377 (844)
T 3j0a_A 298 AYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI 377 (844)
T ss_dssp ESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC
T ss_pred CCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc
Confidence 99865 6789999999999988888999999999999999999988777889999999999999987631
Q ss_pred cc---------------------------------------hhhhcccCccceEeecCCccceecCC-CCCCccceeeec
Q 037249 267 LF---------------------------------------EIHFVNLTKLSVSSVNENNLTLKVNH-DWVPPFQLVQLG 306 (420)
Q Consensus 267 ~~---------------------------------------~~~~~~~~~L~~l~l~~~~~~~~~~~-~~~~~~~~~~l~ 306 (420)
.. ...+..+++|+.|++++|.+...... .+.....++
T Consensus 378 ~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~--- 454 (844)
T 3j0a_A 378 HFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLE--- 454 (844)
T ss_dssp SSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCC---
T ss_pred cCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccc---
Confidence 10 00122455566666666655533221 222233333
Q ss_pred ccceeeccccCccccccc-----c--cccCCccEEEccCCccccCCcccccccccccEEeccCCccccccCccccccCCC
Q 037249 307 LRSFYLDLFNNSFSGSIS-----H--FCYQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTAL 379 (420)
Q Consensus 307 ~~~~~l~l~~~~~~~~~~-----~--~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L 379 (420)
.+++++|.+....+ . ..+++|++|++++|++++..+..|..+++|+.|++++|.+++..+..+. ++|
T Consensus 455 ----~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L 528 (844)
T 3j0a_A 455 ----QLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANL 528 (844)
T ss_dssp ----BCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCC
T ss_pred ----cccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccc
Confidence 45666666653321 1 1458999999999999988888899999999999999999966666655 899
Q ss_pred ceEeCCCcccccccchhhhhcCCCceEEEeeccccccCC
Q 037249 380 MILDVGENEFVGNISTWFGERFSRVVVLILRSNQFRGLL 418 (420)
Q Consensus 380 ~~L~l~~n~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~ 418 (420)
+.|++++|++++..|.. +.+|+.|++++|++....
T Consensus 529 ~~L~Ls~N~l~~~~~~~----~~~L~~l~l~~Np~~C~c 563 (844)
T 3j0a_A 529 EILDISRNQLLAPNPDV----FVSLSVLDITHNKFICEC 563 (844)
T ss_dssp CEEEEEEECCCCCCSCC----CSSCCEEEEEEECCCCSS
T ss_pred cEEECCCCcCCCCChhH----hCCcCEEEecCCCccccc
Confidence 99999999999888755 568999999999987643
No 17
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.3e-37 Score=296.86 Aligned_cols=360 Identities=20% Similarity=0.230 Sum_probs=247.2
Q ss_pred CCCcEEecccCCCCCCCchhhhhccccCceeecCCCcccCC-CCCCCCCCCCccEEEeecccccccccccccCCCcccEE
Q 037249 14 NHLSYLGLSFNDFQGVQIPRFIGSIRNLRYLNLSDTQFVGM-IPPPLGNLSNLQSLDLSLNYLYVENFLWLSGLSFLEQL 92 (420)
Q Consensus 14 ~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 92 (420)
++|++|++++|.++.. .+..+..+++|++|++++|.+... .+..|.++++|++|++++|.+....+..+.++++|++|
T Consensus 30 ~~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSLNSIAEL-NETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108 (455)
T ss_dssp TTCCEEECCSSCCCEE-CTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred CccCEEEecCCccCcC-ChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence 6788889988888744 467788888899999988887644 35678888889999998888887777778888888999
Q ss_pred EcccccCCCccchhhhhCCCCCCcEEEccCCCCCCCCchh-hccCCCCCEEEccCCcCCCCCCCCCCCCChhhhhc--cc
Q 037249 93 DLCYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPLT-ISNFSSLTVLDLSFSQFDNSLIPGWGPIPSWLYRL--TH 169 (420)
Q Consensus 93 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~--~~ 169 (420)
++++|.+.........+..+++|++|++++|.+....+.. +..+++|++|++++|.+... .+..+..+ .+
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~-------~~~~l~~l~~~~ 181 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI-------CEEDLLNFQGKH 181 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC-------CTTTSGGGTTCE
T ss_pred eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc-------Chhhhhcccccc
Confidence 8888887653111123677888888888888888775544 78888888888888887542 22333333 56
Q ss_pred cccccccCCC-Ccccc-ccc--cccCCcEEeeccCcccceeEEEeecCcccccchhhhhcC---CCCCEEECCCcccccC
Q 037249 170 FEQLSVADRP-RRIPR-SMA--SLCNLRTIYLSGCVSKELEILVLQSSSISGHLTEQIGHF---KNLDTLDLGNNSIVGL 242 (420)
Q Consensus 170 L~~L~l~~~~-~~~~~-~~~--~~~~L~~L~l~~~~~~~l~~L~l~~~~~~~~~~~~l~~~---~~L~~L~l~~~~~~~~ 242 (420)
++.++++++. ..++. ++. .+..+ ...+.++.|++++|.+++..+..+... ++|+.+++++|.....
T Consensus 182 L~~L~l~~n~l~~~~~~~~~~~~~~~~-------~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 254 (455)
T 3v47_A 182 FTLLRLSSITLQDMNEYWLGWEKCGNP-------FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGS 254 (455)
T ss_dssp EEEEECTTCBCTTCSTTCTTHHHHCCT-------TTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSC
T ss_pred ccccccccCcccccchhhccccccccc-------cccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccc
Confidence 6666666665 22211 110 00000 011234455555555555555555443 6777777777654321
Q ss_pred ----------Cccchhh--ccCCcEeecCCccccCccchhhhcccCccceEeecCCccceecCCCCCCccceeeecccce
Q 037249 243 ----------VPLSLNE--LSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLGLRSF 310 (420)
Q Consensus 243 ----------~~~~~~~--~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 310 (420)
.+..+.. .++|++|++++|.+++..+. .+..+++|+.|++++|.+....+..+.
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~------------- 320 (455)
T 3v47_A 255 SFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKS-VFSHFTDLEQLTLAQNEINKIDDNAFW------------- 320 (455)
T ss_dssp CTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTT-TTTTCTTCCEEECTTSCCCEECTTTTT-------------
T ss_pred ccchhhhccCcccccccccccCceEEEecCccccccchh-hcccCCCCCEEECCCCcccccChhHhc-------------
Confidence 1112222 25677777777777644443 567777777777777776654433332
Q ss_pred eeccccCcccccccccccCCccEEEccCCccccCCcccccccccccEEeccCCccccccCccccccCCCceEeCCCcccc
Q 037249 311 YLDLFNNSFSGSISHFCYQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVGENEFV 390 (420)
Q Consensus 311 ~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 390 (420)
.+++|++|++++|++++..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|+++
T Consensus 321 ----------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 384 (455)
T 3v47_A 321 ----------------GLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK 384 (455)
T ss_dssp ----------------TCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred ----------------CcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccc
Confidence 2467888888888888777788888888888888888888777888888888888888888887
Q ss_pred cccchhhhhcCCCceEEEeeccccccCCC
Q 037249 391 GNISTWFGERFSRVVVLILRSNQFRGLLP 419 (420)
Q Consensus 391 ~~~~~~l~~~~~~L~~L~l~~~~~~~~~~ 419 (420)
+..+..+.. +++|++|++++|++++.+|
T Consensus 385 ~~~~~~~~~-l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 385 SVPDGIFDR-LTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CCCTTTTTT-CTTCCEEECCSSCBCCCTT
T ss_pred cCCHhHhcc-CCcccEEEccCCCcccCCC
Confidence 655544554 8888888888888888877
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=8.8e-39 Score=315.94 Aligned_cols=333 Identities=14% Similarity=0.185 Sum_probs=243.0
Q ss_pred CcccCCCCCCCCCCCCccEEEeeccccccc-----------------cccccc--CCCcccEEEcccccCCCccchhhhh
Q 037249 49 TQFVGMIPPPLGNLSNLQSLDLSLNYLYVE-----------------NFLWLS--GLSFLEQLDLCYVNLSKASDWLLVA 109 (420)
Q Consensus 49 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-----------------~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~ 109 (420)
|++++ +|..++++++|++|++++|.+... .+..+. ++++|++|++++|.+... ....+
T Consensus 193 n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~--~p~~l 269 (636)
T 4eco_A 193 NNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK--LPTFL 269 (636)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS--CCTTT
T ss_pred CCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCcc--ChHHH
Confidence 34444 566677777777777777776652 344455 677777777777765432 12355
Q ss_pred CCCCCCcEEEccCCC-CCC-CCchhhccC------CCCCEEEccCCcCCCCCCCCCCCCCh--hhhhccccccccccCCC
Q 037249 110 NTLPSLVELRLSNCQ-LHH-LPPLTISNF------SSLTVLDLSFSQFDNSLIPGWGPIPS--WLYRLTHFEQLSVADRP 179 (420)
Q Consensus 110 ~~~~~L~~L~l~~~~-~~~-~~~~~l~~~------~~L~~L~l~~~~~~~~~~~~~~~~~~--~l~~~~~L~~L~l~~~~ 179 (420)
..+++|++|++++|+ +++ ..+..+..+ ++|++|++++|.++. ++. .+..+++|+.|+++++.
T Consensus 270 ~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~--------ip~~~~l~~l~~L~~L~L~~N~ 341 (636)
T 4eco_A 270 KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT--------FPVETSLQKMKKLGMLECLYNQ 341 (636)
T ss_dssp TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSS--------CCCHHHHTTCTTCCEEECCSCC
T ss_pred hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCc--------cCchhhhccCCCCCEEeCcCCc
Confidence 667777777777776 654 333344443 677777777776642 555 66667777777777666
Q ss_pred -C-ccccccccccCCcEEeeccCcccceeEEEeecCcccccchhhhhcCCC-CCEEECCCcccccCCccchhhcc--CCc
Q 037249 180 -R-RIPRSMASLCNLRTIYLSGCVSKELEILVLQSSSISGHLTEQIGHFKN-LDTLDLGNNSIVGLVPLSLNELS--KLR 254 (420)
Q Consensus 180 -~-~~~~~~~~~~~L~~L~l~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~~~~~--~L~ 254 (420)
. .+| .+..+++|+.|++++| .++ .+|..+..+++ |+.|++++|.+.. +|..+..++ +|+
T Consensus 342 l~g~ip-~~~~l~~L~~L~L~~N-------------~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~-lp~~~~~~~l~~L~ 405 (636)
T 4eco_A 342 LEGKLP-AFGSEIKLASLNLAYN-------------QIT-EIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMS 405 (636)
T ss_dssp CEEECC-CCEEEEEESEEECCSS-------------EEE-ECCTTSEEECTTCCEEECCSSCCSS-CCSCCCTTCSSCEE
T ss_pred Cccchh-hhCCCCCCCEEECCCC-------------ccc-cccHhhhhhcccCcEEEccCCcCcc-cchhhhhcccCccC
Confidence 2 455 6666666666666555 444 45667888899 9999999999994 467766654 899
Q ss_pred EeecCCccccCccchhhhc-------ccCccceEeecCCccceecCCCCCCccceeeecccceeeccccCccccccccc-
Q 037249 255 ILHLPDNKLNGTLFEIHFV-------NLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLGLRSFYLDLFNNSFSGSISHF- 326 (420)
Q Consensus 255 ~L~l~~~~l~~~~~~~~~~-------~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~- 326 (420)
+|++++|.+++..|. .+. .+++|+.|++++|.+.......+.....++ .+++++|.+.......
T Consensus 406 ~L~Ls~N~l~~~~p~-~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~-------~L~Ls~N~l~~i~~~~~ 477 (636)
T 4eco_A 406 AIDFSYNEIGSVDGK-NFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS-------SINLMGNMLTEIPKNSL 477 (636)
T ss_dssp EEECCSSCTTTTTTC-SSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCS-------EEECCSSCCSBCCSSSS
T ss_pred EEECcCCcCCCcchh-hhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCC-------EEECCCCCCCCcCHHHh
Confidence 999999999876665 455 778999999999998854433333344444 6778888888443322
Q ss_pred -cc-------CCccEEEccCCccccCCccccc--ccccccEEeccCCccccccCccccccCCCceEeC------CCcccc
Q 037249 327 -CY-------QNLMLLTLSNNKFTGNLPNSLG--SLTSLVSLHLHKNIFSGTIPISLKNCTALMILDV------GENEFV 390 (420)
Q Consensus 327 -~~-------~~L~~L~l~~~~l~~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l------~~n~~~ 390 (420)
.. ++|++|++++|+++ .+|..+. .+++|+.|++++|++++ +|..+..+++|++|++ ++|++.
T Consensus 478 ~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~ 555 (636)
T 4eco_A 478 KDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTL 555 (636)
T ss_dssp EETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCC
T ss_pred ccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCccc
Confidence 11 28999999999999 6787776 99999999999999995 8999999999999999 567888
Q ss_pred cccchhhhhcCCCceEEEeeccccccCCCC
Q 037249 391 GNISTWFGERFSRVVVLILRSNQFRGLLPT 420 (420)
Q Consensus 391 ~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~ 420 (420)
+.+|..+.. +++|++|++++|++ +.||.
T Consensus 556 ~~~p~~l~~-l~~L~~L~Ls~N~l-~~ip~ 583 (636)
T 4eco_A 556 REWPEGITL-CPSLTQLQIGSNDI-RKVNE 583 (636)
T ss_dssp CCCCTTGGG-CSSCCEEECCSSCC-CBCCS
T ss_pred ccChHHHhc-CCCCCEEECCCCcC-CccCH
Confidence 899999987 99999999999999 78884
No 19
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.2e-36 Score=300.51 Aligned_cols=398 Identities=23% Similarity=0.228 Sum_probs=273.1
Q ss_pred CCCCCccCCCCCCcEEecccCCCCCCCchhhhhccccCceeecCCCcccCCCCCCCCCCCCccEEEeecccccccccccc
Q 037249 4 GKVNPSLLDLNHLSYLGLSFNDFQGVQIPRFIGSIRNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENFLWL 83 (420)
Q Consensus 4 ~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 83 (420)
.++|+.+. +.+++||+++|.|+.. .+..|.++++|++|++++|+++...+.+|.++++|++|++++|++...+..+|
T Consensus 44 ~~vP~~lp--~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f 120 (635)
T 4g8a_A 44 YKIPDNLP--FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF 120 (635)
T ss_dssp SSCCSSSC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGG
T ss_pred CccCCCCC--cCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHh
Confidence 35666553 4789999999999843 34678899999999999999987777789999999999999999988888889
Q ss_pred cCCCcccEEEcccccCCCccchhhhhCCCCCCcEEEccCCCCCCCC-chhhccCCCCCEEEccCCcCCCCCCCCC-----
Q 037249 84 SGLSFLEQLDLCYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLP-PLTISNFSSLTVLDLSFSQFDNSLIPGW----- 157 (420)
Q Consensus 84 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~----- 157 (420)
.++++|++|++++|.+...+. ..++.+++|++|++++|.+..+. +..+..+++|++|++++|.++......+
T Consensus 121 ~~L~~L~~L~Ls~N~l~~l~~--~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~ 198 (635)
T 4g8a_A 121 SGLSSLQKLVAVETNLASLEN--FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 198 (635)
T ss_dssp TTCTTCCEEECTTSCCCCSTT--CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHT
T ss_pred cCCCCCCEEECCCCcCCCCCh--hhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhh
Confidence 999999999999999887753 24678999999999999987653 4567889999999999987754211110
Q ss_pred ---------------CCCCh-------------------------hhhhccccccccccCC-------------------
Q 037249 158 ---------------GPIPS-------------------------WLYRLTHFEQLSVADR------------------- 178 (420)
Q Consensus 158 ---------------~~~~~-------------------------~l~~~~~L~~L~l~~~------------------- 178 (420)
..++. .+..+..++...+...
T Consensus 199 l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~ 278 (635)
T 4g8a_A 199 MPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 278 (635)
T ss_dssp CTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGG
T ss_pred hhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccc
Confidence 00000 0111111111110000
Q ss_pred -----------C-----Cccccccccc----------------------cCCcEEeeccCcc--------cceeEEEeec
Q 037249 179 -----------P-----RRIPRSMASL----------------------CNLRTIYLSGCVS--------KELEILVLQS 212 (420)
Q Consensus 179 -----------~-----~~~~~~~~~~----------------------~~L~~L~l~~~~~--------~~l~~L~l~~ 212 (420)
. ......+..+ ..++.|++.++.+ ..++.+.+..
T Consensus 279 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~ 358 (635)
T 4g8a_A 279 CNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTS 358 (635)
T ss_dssp GGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEES
T ss_pred cchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhccccc
Confidence 0 0000111112 2344444443321 1222222222
Q ss_pred CcccccchhhhhcCCCCCEEECCCcccccC-------------------------CccchhhccCCcEeecCCccccCcc
Q 037249 213 SSISGHLTEQIGHFKNLDTLDLGNNSIVGL-------------------------VPLSLNELSKLRILHLPDNKLNGTL 267 (420)
Q Consensus 213 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-------------------------~~~~~~~~~~L~~L~l~~~~l~~~~ 267 (420)
+..... .....+++|+.+++++|.+... .+..+..+++|+.+++.++......
T Consensus 359 n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~ 436 (635)
T 4g8a_A 359 NKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS 436 (635)
T ss_dssp CCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTT
T ss_pred ccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccc
Confidence 222111 1112345555555555544321 1233455667777777776655455
Q ss_pred chhhhcccCccceEeecCCccceecCCCCCCccceeeecccceeeccccCcccc-ccccc--ccCCccEEEccCCccccC
Q 037249 268 FEIHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLGLRSFYLDLFNNSFSG-SISHF--CYQNLMLLTLSNNKFTGN 344 (420)
Q Consensus 268 ~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~-~~~~~--~~~~L~~L~l~~~~l~~~ 344 (420)
+...+..+++++.++++.|.+....+..+.....++ .+++++|.+.. ..+.. .+++|++|++++|++++.
T Consensus 437 ~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~-------~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l 509 (635)
T 4g8a_A 437 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE-------VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 509 (635)
T ss_dssp SSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCC-------EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE
T ss_pred cccccccccccccccccccccccccccccccchhhh-------hhhhhhcccccccCchhhhhccccCEEECCCCccCCc
Confidence 544677788888888888888877777776666666 56677776443 33332 568999999999999988
Q ss_pred CcccccccccccEEeccCCccccccCccccccCCCceEeCCCcccccccchhhhhcC-CCceEEEeecccccc
Q 037249 345 LPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVGENEFVGNISTWFGERF-SRVVVLILRSNQFRG 416 (420)
Q Consensus 345 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~-~~L~~L~l~~~~~~~ 416 (420)
.|..|.++++|++|+|++|++++..+..+..+++|++||+++|++++..|..+.. + ++|++|++++||++-
T Consensus 510 ~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~-l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 510 SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH-FPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTC-CCTTCCEEECTTCCBCC
T ss_pred ChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHh-hhCcCCEEEeeCCCCcc
Confidence 8899999999999999999999777888999999999999999999888888876 6 689999999999864
No 20
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=6.2e-37 Score=299.44 Aligned_cols=200 Identities=20% Similarity=0.278 Sum_probs=147.7
Q ss_pred ceeEEEeecCcccccchhhh-----hcC--------------------------CCCCEEECCCcccccCCccchhhccC
Q 037249 204 ELEILVLQSSSISGHLTEQI-----GHF--------------------------KNLDTLDLGNNSIVGLVPLSLNELSK 252 (420)
Q Consensus 204 ~l~~L~l~~~~~~~~~~~~l-----~~~--------------------------~~L~~L~l~~~~~~~~~~~~~~~~~~ 252 (420)
.++.|++++|.+++.+|..+ ..+ .+|+.|++++|.+.... ....+++
T Consensus 277 ~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~ 354 (562)
T 3a79_B 277 PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSS 354 (562)
T ss_dssp SEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCC
T ss_pred cccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCCCC
Confidence 67888888887775555433 111 34666777766665431 1256788
Q ss_pred CcEeecCCccccCccchhhhcccCccceEeecCCccceec--CCCCCCccceeeecccceeeccccCccccccccc---c
Q 037249 253 LRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLKV--NHDWVPPFQLVQLGLRSFYLDLFNNSFSGSISHF---C 327 (420)
Q Consensus 253 L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~--~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~---~ 327 (420)
|++|++++|.+++..+. .+..+++|+.|++++|.+.... +..+.....++ .+++++|.+.+..+.. .
T Consensus 355 L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~-------~L~l~~N~l~~~~~~~~~~~ 426 (562)
T 3a79_B 355 FTFLNFTQNVFTDSVFQ-GCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLE-------TLDVSLNSLNSHAYDRTCAW 426 (562)
T ss_dssp CCEEECCSSCCCTTTTT-TCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCC-------EEECTTSCCBSCCSSCCCCC
T ss_pred ceEEECCCCccccchhh-hhcccCCCCEEECCCCCcCCcccchhhhcCCCCCC-------EEECCCCcCCCccChhhhcC
Confidence 99999999988865554 6788899999999998887532 23455555555 6777888887744332 4
Q ss_pred cCCccEEEccCCccccCCcccccccccccEEeccCCccccccCccccccCCCceEeCCCcccccccchh-hhhcCCCceE
Q 037249 328 YQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVGENEFVGNISTW-FGERFSRVVV 406 (420)
Q Consensus 328 ~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~-l~~~~~~L~~ 406 (420)
+++|++|++++|++++..+..+. ++|+.|++++|+++ .+|..+..+++|++|++++|+++ .+|.. +.. +++|++
T Consensus 427 l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~-l~~L~~ 501 (562)
T 3a79_B 427 AESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDR-LTSLQY 501 (562)
T ss_dssp CTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTT-CTTCCC
T ss_pred cccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhc-CCCCCE
Confidence 58999999999999866665544 79999999999998 78877779999999999999998 55655 554 999999
Q ss_pred EEeeccccccCC
Q 037249 407 LILRSNQFRGLL 418 (420)
Q Consensus 407 L~l~~~~~~~~~ 418 (420)
|++++|++++..
T Consensus 502 L~l~~N~~~c~c 513 (562)
T 3a79_B 502 IWLHDNPWDCTC 513 (562)
T ss_dssp EECCSCCBCCCH
T ss_pred EEecCCCcCCCc
Confidence 999999998754
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.5e-37 Score=309.73 Aligned_cols=347 Identities=20% Similarity=0.220 Sum_probs=256.6
Q ss_pred CCCccCCCCCCcEEecccCCCCCC----------------Cchhhhh--ccccCceeecCCCcccCCCCCCCCCCCCccE
Q 037249 6 VNPSLLDLNHLSYLGLSFNDFQGV----------------QIPRFIG--SIRNLRYLNLSDTQFVGMIPPPLGNLSNLQS 67 (420)
Q Consensus 6 l~~~~~~~~~L~~L~l~~~~i~~~----------------~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 67 (420)
||+.+.++++|++|++++|.+++. .+|..++ ++++|++|++++|.+.+.+|..+.++++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 999999999999999999999851 1777776 9999999999999999899999999999999
Q ss_pred EEeeccc-ccc-cccccc-------cCCCcccEEEcccccCCCccchhhhhCCCCCCcEEEccCCCCCCCCchhhccCCC
Q 037249 68 LDLSLNY-LYV-ENFLWL-------SGLSFLEQLDLCYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPLTISNFSS 138 (420)
Q Consensus 68 L~l~~~~-~~~-~~~~~~-------~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 138 (420)
|++++|+ +.. ..+..+ ..+++|+.|++++|.+...+. ...+..+++|++|++++|.+..++ .+..+++
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~-~~~l~~L~~L~~L~Ls~N~l~~lp--~~~~L~~ 596 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPA-SASLQKMVKLGLLDCVHNKVRHLE--AFGTNVK 596 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCC-HHHHTTCTTCCEEECTTSCCCBCC--CCCTTSE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCC-hhhhhcCCCCCEEECCCCCcccch--hhcCCCc
Confidence 9999998 765 333333 355699999999999986553 125778999999999999999665 7899999
Q ss_pred CCEEEccCCcCCCCCCCCCCCCChhhhhccc-cccccccCCC-Ccccccccccc--CCcEEeeccCccc-----------
Q 037249 139 LTVLDLSFSQFDNSLIPGWGPIPSWLYRLTH-FEQLSVADRP-RRIPRSMASLC--NLRTIYLSGCVSK----------- 203 (420)
Q Consensus 139 L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~-~~~~~~~~~~~--~L~~L~l~~~~~~----------- 203 (420)
|++|++++|.+.. ++..+..+++ |+.|+++++. ..+|..+...+ +|+.|++++|.+.
T Consensus 597 L~~L~Ls~N~l~~--------lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~ 668 (876)
T 4ecn_A 597 LTDLKLDYNQIEE--------IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMD 668 (876)
T ss_dssp ESEEECCSSCCSC--------CCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTT
T ss_pred ceEEECcCCcccc--------chHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhc
Confidence 9999999999863 7777888998 9999999998 66777776654 4888888887651
Q ss_pred -----ceeEEEeecCcccccchhhhhcCCCCCEEECCCcccccCCccchh-------hccCCcEeecCCccccCccchhh
Q 037249 204 -----ELEILVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLN-------ELSKLRILHLPDNKLNGTLFEIH 271 (420)
Q Consensus 204 -----~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~l~~~~~~~~ 271 (420)
.++.|++++|.++......+..+++|+.|++++|.+.......+. ++++|+.|++++|.++ .++. .
T Consensus 669 ~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~-~ 746 (876)
T 4ecn_A 669 DYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSD-D 746 (876)
T ss_dssp TCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCG-G
T ss_pred cccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchH-H
Confidence 355555555555533333334455555555555555533211111 1225555555555554 3333 2
Q ss_pred hc--ccCccceEeecCCccceecCCCCCCccceeeecccceeeccccCccccccccc-ccCCccEEEccC------Cccc
Q 037249 272 FV--NLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLGLRSFYLDLFNNSFSGSISHF-CYQNLMLLTLSN------NKFT 342 (420)
Q Consensus 272 ~~--~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~------~~l~ 342 (420)
+. .+++|+.|++++|. +.+..... .+++|+.|++++ |++.
T Consensus 747 l~~~~l~~L~~L~Ls~N~-------------------------------L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~ 795 (876)
T 4ecn_A 747 FRATTLPYLSNMDVSYNC-------------------------------FSSFPTQPLNSSQLKAFGIRHQRDAEGNRIL 795 (876)
T ss_dssp GSTTTCTTCCEEECCSSC-------------------------------CSSCCCGGGGCTTCCEEECCCCBCTTCCBCC
T ss_pred hhhccCCCcCEEEeCCCC-------------------------------CCccchhhhcCCCCCEEECCCCCCccccccc
Confidence 22 45555555555544 44422221 468899999976 7778
Q ss_pred cCCcccccccccccEEeccCCccccccCccccccCCCceEeCCCcccccccchhhhh
Q 037249 343 GNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVGENEFVGNISTWFGE 399 (420)
Q Consensus 343 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~ 399 (420)
+.+|..+..+++|+.|++++|.+. .+|..+. ++|+.|||++|++....+..+..
T Consensus 796 ~~ip~~l~~L~~L~~L~Ls~N~L~-~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~ 849 (876)
T 4ecn_A 796 RQWPTGITTCPSLIQLQIGSNDIR-KVDEKLT--PQLYILDIADNPNISIDVTSVCP 849 (876)
T ss_dssp CCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--SSSCEEECCSCTTCEEECGGGHH
T ss_pred ccChHHHhcCCCCCEEECCCCCCC-ccCHhhc--CCCCEEECCCCCCCccChHHccc
Confidence 889999999999999999999994 8888765 79999999999997766655543
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.6e-36 Score=291.68 Aligned_cols=370 Identities=20% Similarity=0.184 Sum_probs=284.4
Q ss_pred cEEecccCCCCCCCchhhhhccccCceeecCCCcccCCCCCCCCCCCCccEEEeecccccccccccccCCCcccEEEccc
Q 037249 17 SYLGLSFNDFQGVQIPRFIGSIRNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENFLWLSGLSFLEQLDLCY 96 (420)
Q Consensus 17 ~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 96 (420)
++|+++++.++ .+|..+. ++|++|++++|.+....|.+|.++++|++|++++|++....+..+.++++|++|++++
T Consensus 3 ~~l~ls~n~l~--~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLI--HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCS--SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCCCcc--ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 57999999998 4666555 8999999999999877677899999999999999999988888899999999999999
Q ss_pred ccCCCccchhhhhCCCCCCcEEEccCCCCCCC-CchhhccCCCCCEEEccCCcCCCCCCCCCCCCChhhhhcccc--ccc
Q 037249 97 VNLSKASDWLLVANTLPSLVELRLSNCQLHHL-PPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSWLYRLTHF--EQL 173 (420)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L--~~L 173 (420)
|.+...+.. .+++|++|++++|.+..+ .+..+..+++|++|++++|.+.. ..+..+++| +.|
T Consensus 79 N~l~~lp~~-----~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----------~~~~~l~~L~L~~L 143 (520)
T 2z7x_B 79 NKLVKISCH-----PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----------SSVLPIAHLNISKV 143 (520)
T ss_dssp SCCCEEECC-----CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----------GGGGGGTTSCEEEE
T ss_pred CceeecCcc-----ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch----------hhccccccceeeEE
Confidence 999876642 799999999999999875 34688999999999999998853 345566677 888
Q ss_pred cccCCCC----cccccc--------------------------ccccCCcEEeeccCc-----------------cccee
Q 037249 174 SVADRPR----RIPRSM--------------------------ASLCNLRTIYLSGCV-----------------SKELE 206 (420)
Q Consensus 174 ~l~~~~~----~~~~~~--------------------------~~~~~L~~L~l~~~~-----------------~~~l~ 206 (420)
+++++.- ..|..+ ..+++|+.+++++|. .+.++
T Consensus 144 ~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~ 223 (520)
T 2z7x_B 144 LLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLS 223 (520)
T ss_dssp EEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCC
T ss_pred EeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchh
Confidence 8877642 223333 346777888887764 36778
Q ss_pred EEEeecCcccccchhhhh---cCCCCCEEECCCcccccCCccch-----hhccCCcEeecCCccccCccchhh-------
Q 037249 207 ILVLQSSSISGHLTEQIG---HFKNLDTLDLGNNSIVGLVPLSL-----NELSKLRILHLPDNKLNGTLFEIH------- 271 (420)
Q Consensus 207 ~L~l~~~~~~~~~~~~l~---~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~l~~~~~~~~------- 271 (420)
.|+++++.+.+.....+. ..++|+.|++++|.+.+..|..+ +.+++|+.+++++|.+ .+|...
T Consensus 224 ~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~ 301 (520)
T 2z7x_B 224 NLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSN 301 (520)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHT
T ss_pred hccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhccccc
Confidence 888888777653332221 24689999999999886666666 5566666666655554 222100
Q ss_pred ------------------hcccCccceEeecCCccceecCCCCCCccceeeecccceeeccccCcccccc--cc--cccC
Q 037249 272 ------------------FVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLGLRSFYLDLFNNSFSGSI--SH--FCYQ 329 (420)
Q Consensus 272 ------------------~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~--~~--~~~~ 329 (420)
...+++|+.|++++|.+....+..+.....++ ++++++|.+.+.. +. ..++
T Consensus 302 ~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~-------~L~L~~N~l~~l~~~~~~~~~l~ 374 (520)
T 2z7x_B 302 MNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELE-------TLILQMNQLKELSKIAEMTTQMK 374 (520)
T ss_dssp CCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCC-------EEECCSSCCCBHHHHHHHHTTCT
T ss_pred CceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCC-------EEEccCCccCccccchHHHhhCC
Confidence 15778888888888888776666666666555 6777888887632 22 2668
Q ss_pred CccEEEccCCccccCCcc-cccccccccEEeccCCccccccCccccccCCCceEeCCCcccccccchhhhhcCCCceEEE
Q 037249 330 NLMLLTLSNNKFTGNLPN-SLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVGENEFVGNISTWFGERFSRVVVLI 408 (420)
Q Consensus 330 ~L~~L~l~~~~l~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~~L~~L~ 408 (420)
+|++|++++|++++.+|. .+..+++|+.|++++|.+++..|..+. ++|++|++++|+++ .+|..+.. +++|++|+
T Consensus 375 ~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~-l~~L~~L~ 450 (520)
T 2z7x_B 375 SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVK-LEALQELN 450 (520)
T ss_dssp TCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGG-CTTCCEEE
T ss_pred CCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhc-CCCCCEEE
Confidence 999999999999864554 478889999999999999877776664 79999999999998 78887775 99999999
Q ss_pred eeccccccCCC
Q 037249 409 LRSNQFRGLLP 419 (420)
Q Consensus 409 l~~~~~~~~~~ 419 (420)
+++|+++ .+|
T Consensus 451 L~~N~l~-~l~ 460 (520)
T 2z7x_B 451 VASNQLK-SVP 460 (520)
T ss_dssp CCSSCCC-CCC
T ss_pred CCCCcCC-ccC
Confidence 9999997 465
No 23
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=6.1e-35 Score=278.72 Aligned_cols=346 Identities=25% Similarity=0.307 Sum_probs=257.3
Q ss_pred CCCCCcEEecccCCCCCCCchhhhhccccCceeecCCCcccCCCCCCCCCCCCccEEEeecccccccccccccCCCcccE
Q 037249 12 DLNHLSYLGLSFNDFQGVQIPRFIGSIRNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENFLWLSGLSFLEQ 91 (420)
Q Consensus 12 ~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 91 (420)
.+++++.|+++++.+.. ++ .+..+++|++|++++|.+... +. +.++++|++|++++|.+..... +.++++|++
T Consensus 44 ~l~~l~~L~l~~~~i~~--l~-~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKS--ID-GVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP--LANLTNLTG 116 (466)
T ss_dssp HHHTCCEEECCSSCCCC--CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred HhccccEEecCCCCCcc--Cc-chhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence 36788888888888763 44 367788899999988888744 33 7888889999998888776654 788888899
Q ss_pred EEcccccCCCccchhhhhCCCCCCcEEEccCCCCCCCCchhhccCCCCCEEEccCCcCCCCCCCCCCCCChhhhhccccc
Q 037249 92 LDLCYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSWLYRLTHFE 171 (420)
Q Consensus 92 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~ 171 (420)
|++++|.+...+. +..+++|++|++++|.+..++ .+..+++|++|++++ .+.. . ..+..+++|+
T Consensus 117 L~L~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~~-~~~~--------~-~~~~~l~~L~ 180 (466)
T 1o6v_A 117 LTLFNNQITDIDP----LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFGN-QVTD--------L-KPLANLTTLE 180 (466)
T ss_dssp EECCSSCCCCCGG----GTTCTTCSEEEEEEEEECCCG--GGTTCTTCSEEEEEE-SCCC--------C-GGGTTCTTCC
T ss_pred EECCCCCCCCChH----HcCCCCCCEEECCCCccCCCh--hhccCCcccEeecCC-cccC--------c-hhhccCCCCC
Confidence 9998888777642 677888889988888887765 477888888888863 3321 2 2377788888
Q ss_pred cccccCCCCccccccccccCCcEEeeccCcccceeEEEeecCcccccchhhhhcCCCCCEEECCCcccccCCccchhhcc
Q 037249 172 QLSVADRPRRIPRSMASLCNLRTIYLSGCVSKELEILVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELS 251 (420)
Q Consensus 172 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 251 (420)
.|+++++.-.....+..+++|+.|++++|.+ .+..+ ++.+++|+.|++++|.+.+. ..+..++
T Consensus 181 ~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l-------------~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~ 243 (466)
T 1o6v_A 181 RLDISSNKVSDISVLAKLTNLESLIATNNQI-------------SDITP--LGILTNLDELSLNGNQLKDI--GTLASLT 243 (466)
T ss_dssp EEECCSSCCCCCGGGGGCTTCSEEECCSSCC-------------CCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCT
T ss_pred EEECcCCcCCCChhhccCCCCCEEEecCCcc-------------ccccc--ccccCCCCEEECCCCCcccc--hhhhcCC
Confidence 8888888733334567777788777777654 22222 55677788888887777764 3566777
Q ss_pred CCcEeecCCccccCccchhhhcccCccceEeecCCccceecCCCCCCccceeeecccceeeccccCcccccccccccCCc
Q 037249 252 KLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLGLRSFYLDLFNNSFSGSISHFCYQNL 331 (420)
Q Consensus 252 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~L 331 (420)
+|++|++++|.+++..+ +..+++|+.|++++|.+....+ +.....++ .+++++|.+.+..+...+++|
T Consensus 244 ~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~-------~L~L~~n~l~~~~~~~~l~~L 311 (466)
T 1o6v_A 244 NLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISNISP--LAGLTALT-------NLELNENQLEDISPISNLKNL 311 (466)
T ss_dssp TCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCCCCGG--GTTCTTCS-------EEECCSSCCSCCGGGGGCTTC
T ss_pred CCCEEECCCCccccchh---hhcCCCCCEEECCCCccCcccc--ccCCCccC-------eEEcCCCcccCchhhcCCCCC
Confidence 78888888877764332 6677778888887777765443 33333443 566677777776665577899
Q ss_pred cEEEccCCccccCCcccccccccccEEeccCCccccccCccccccCCCceEeCCCcccccccchhhhhcCCCceEEEeec
Q 037249 332 MLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVGENEFVGNISTWFGERFSRVVVLILRS 411 (420)
Q Consensus 332 ~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~~L~~L~l~~ 411 (420)
++|++++|++++..+ +..+++|++|++++|.+.+. ..+..+++|++|++++|++++..| +.. +++|+.|++++
T Consensus 312 ~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~-l~~L~~L~l~~ 384 (466)
T 1o6v_A 312 TYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LAN-LTRITQLGLND 384 (466)
T ss_dssp SEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTT-CTTCCEEECCC
T ss_pred CEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhc-CCCCCEEeccC
Confidence 999999999986544 78899999999999998844 478889999999999999987777 554 89999999999
Q ss_pred ccccc
Q 037249 412 NQFRG 416 (420)
Q Consensus 412 ~~~~~ 416 (420)
|++++
T Consensus 385 n~~~~ 389 (466)
T 1o6v_A 385 QAWTN 389 (466)
T ss_dssp EEEEC
T ss_pred CcccC
Confidence 99887
No 24
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=4e-35 Score=286.32 Aligned_cols=382 Identities=18% Similarity=0.144 Sum_probs=245.2
Q ss_pred CCCCcEEecccCCCCCCCchhhhhccccCceeecCCCcccCCCCCCCCCCCCccEEEeecccccccccccccCCCcccEE
Q 037249 13 LNHLSYLGLSFNDFQGVQIPRFIGSIRNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENFLWLSGLSFLEQL 92 (420)
Q Consensus 13 ~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 92 (420)
|+...+.+.+++.++ .+|..+. ++|++|++++|+++...|.+|.++++|++|++++|.+....+.++.++++|++|
T Consensus 4 C~~~~~c~~~~~~l~--~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 79 (549)
T 2z81_A 4 CDASGVCDGRSRSFT--SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHL 79 (549)
T ss_dssp ECTTSEEECTTSCCS--SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCceEECCCCccc--cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEE
Confidence 344445677777777 4565543 799999999999987788899999999999999999998888889999999999
Q ss_pred EcccccCCCccchhhhhCCCCCCcEEEccCCCCCCCC-chhhccCCCCCEEEccCCcCCCCCCCCCCCCChhhhhccccc
Q 037249 93 DLCYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLP-PLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSWLYRLTHFE 171 (420)
Q Consensus 93 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~ 171 (420)
++++|.+...+. ..+..+++|++|++++|.+.... +..+..+++|++|++++|.... .-.+..+..+++|+
T Consensus 80 ~Ls~n~l~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~------~~~~~~~~~l~~L~ 151 (549)
T 2z81_A 80 DLSDNHLSSLSS--SWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFS------EIRRIDFAGLTSLN 151 (549)
T ss_dssp ECTTSCCCSCCH--HHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCC------EECTTTTTTCCEEE
T ss_pred ECCCCccCccCH--HHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCcccc------ccCHhhhhcccccC
Confidence 999999987753 35788999999999999998653 3468899999999999997422 11224677788899
Q ss_pred cccccCCC--CccccccccccCCcEEeeccCc-----------ccceeEEEeecCccccc--------------------
Q 037249 172 QLSVADRP--RRIPRSMASLCNLRTIYLSGCV-----------SKELEILVLQSSSISGH-------------------- 218 (420)
Q Consensus 172 ~L~l~~~~--~~~~~~~~~~~~L~~L~l~~~~-----------~~~l~~L~l~~~~~~~~-------------------- 218 (420)
+|+++++. ...+.++..+++|++|+++++. .+.++.|++++|.+++.
T Consensus 152 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~ 231 (549)
T 2z81_A 152 ELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFR 231 (549)
T ss_dssp EEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEE
T ss_pred eeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceecc
Confidence 99988877 3466677777777777766654 24566666666665542
Q ss_pred -------ch----hhhhcCCCCCEEECCCcccccCC-----------------------------------ccchhhccC
Q 037249 219 -------LT----EQIGHFKNLDTLDLGNNSIVGLV-----------------------------------PLSLNELSK 252 (420)
Q Consensus 219 -------~~----~~l~~~~~L~~L~l~~~~~~~~~-----------------------------------~~~~~~~~~ 252 (420)
.+ ..+..+++|+.+++++|.+.+.. +..+...++
T Consensus 232 ~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~ 311 (549)
T 2z81_A 232 GSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEK 311 (549)
T ss_dssp SCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTT
T ss_pred ccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhccc
Confidence 11 11223344444444444332210 000111234
Q ss_pred CcEeecCCccccCccchhhhcccCccceEeecCCccceec---CCCCCCccceeeecccceeeccccCccccccc----c
Q 037249 253 LRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLKV---NHDWVPPFQLVQLGLRSFYLDLFNNSFSGSIS----H 325 (420)
Q Consensus 253 L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~---~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~----~ 325 (420)
|+.|++++|.+. .+|...+..+++|+.|++++|.+.... ...+.....++ .+++++|.+++..+ .
T Consensus 312 L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~-------~L~Ls~N~l~~~~~~~~~~ 383 (549)
T 2z81_A 312 VKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQ-------TLVLSQNHLRSMQKTGEIL 383 (549)
T ss_dssp CCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCC-------EEECTTSCCCCHHHHHHHG
T ss_pred ceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCc-------EEEccCCcccccccchhhh
Confidence 555555555544 344433345666666666666555432 11222233333 34444444444321 1
Q ss_pred cccCCccEEEccCCccccCCcccccccccccEEeccCCccccccCcc------------------ccccCCCceEeCCCc
Q 037249 326 FCYQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIPIS------------------LKNCTALMILDVGEN 387 (420)
Q Consensus 326 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~------------------l~~l~~L~~L~l~~n 387 (420)
..+++|++|++++|+++ .+|..+..+++|++|++++|.+. .++.. +..+++|++|++++|
T Consensus 384 ~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N 461 (549)
T 2z81_A 384 LTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRN 461 (549)
T ss_dssp GGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSS
T ss_pred hcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchhcCCceEEECCCCChhhhcccCChhcEEECCCC
Confidence 13455555555555555 34444444455555555555443 22211 236789999999999
Q ss_pred ccccccchhhhhcCCCceEEEeeccccccCCC
Q 037249 388 EFVGNISTWFGERFSRVVVLILRSNQFRGLLP 419 (420)
Q Consensus 388 ~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~ 419 (420)
+++ .+|. .. .+++|++|++++|++++.+|
T Consensus 462 ~l~-~ip~-~~-~l~~L~~L~Ls~N~l~~~~~ 490 (549)
T 2z81_A 462 KLK-TLPD-AS-LFPVLLVMKISRNQLKSVPD 490 (549)
T ss_dssp CCS-SCCC-GG-GCTTCCEEECCSSCCCCCCT
T ss_pred ccC-cCCC-cc-cCccCCEEecCCCccCCcCH
Confidence 887 5665 33 38899999999999988766
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=4.9e-35 Score=279.01 Aligned_cols=359 Identities=18% Similarity=0.157 Sum_probs=273.4
Q ss_pred CCCCCCCccCCCCCCcEEecccCCCCCCCchhhhhccccCceeecCCCcccCCCCCCCCCCCCccEEEeeccccccccc-
Q 037249 2 LVGKVNPSLLDLNHLSYLGLSFNDFQGVQIPRFIGSIRNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENF- 80 (420)
Q Consensus 2 ~~~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~- 80 (420)
+.+..|.++.++++|++|++++|.+...-.+..+..+++|++|++++|++....|..|+++++|++|++++|.+....+
T Consensus 42 i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 121 (455)
T 3v47_A 42 IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLS 121 (455)
T ss_dssp CCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHH
T ss_pred cCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccC
Confidence 3445688999999999999999988644346678999999999999999988889999999999999999999876333
Q ss_pred -ccccCCCcccEEEcccccCCCccchhhhhCCCCCCcEEEccCCCCCCCCchhhccC--CCCCEEEccCCcCCCCCCCCC
Q 037249 81 -LWLSGLSFLEQLDLCYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPLTISNF--SSLTVLDLSFSQFDNSLIPGW 157 (420)
Q Consensus 81 -~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~ 157 (420)
..+..+++|++|++++|.+..... ...+..+++|++|++++|.+....+..+..+ .+++.++++++.+.......+
T Consensus 122 ~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~ 200 (455)
T 3v47_A 122 GNFFKPLTSLEMLVLRDNNIKKIQP-ASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWL 200 (455)
T ss_dssp SSTTTTCTTCCEEECCSSBCCSCCC-CGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCT
T ss_pred cccccCcccCCEEECCCCccCccCc-ccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhc
Confidence 348899999999999999987632 1236789999999999999998877677665 789999999998865221110
Q ss_pred C-CCChhhhhccccccccccCCC--Cccccccccc---cCCcEEeeccCcccceeEEEeecCcccccchhhhhc--CCCC
Q 037249 158 G-PIPSWLYRLTHFEQLSVADRP--RRIPRSMASL---CNLRTIYLSGCVSKELEILVLQSSSISGHLTEQIGH--FKNL 229 (420)
Q Consensus 158 ~-~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~~---~~L~~L~l~~~~~~~l~~L~l~~~~~~~~~~~~l~~--~~~L 229 (420)
. .....+..+++|+.|+++++. ...+..+... ++++.|++++|..... .+..+.+.+.....+.. .++|
T Consensus 201 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~L 277 (455)
T 3v47_A 201 GWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGS---SFGHTNFKDPDNFTFKGLEASGV 277 (455)
T ss_dssp THHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSC---CTTCCSSCCCCTTTTGGGTTSCC
T ss_pred cccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccc---ccchhhhccCcccccccccccCc
Confidence 0 000113345788888888886 3344444433 6778888877643211 01111222222222222 3689
Q ss_pred CEEECCCcccccCCccchhhccCCcEeecCCccccCccchhhhcccCccceEeecCCccceecCCCCCCccceeeecccc
Q 037249 230 DTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLGLRS 309 (420)
Q Consensus 230 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 309 (420)
+.+++++|.+.+..+..++.+++|++|++++|.+++..+. .+..+++|+.|++++|.+....+..+.
T Consensus 278 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~------------ 344 (455)
T 3v47_A 278 KTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDN-AFWGLTHLLKLNLSQNFLGSIDSRMFE------------ 344 (455)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCCEECGGGGT------------
T ss_pred eEEEecCccccccchhhcccCCCCCEEECCCCcccccChh-HhcCcccCCEEECCCCccCCcChhHhc------------
Confidence 9999999999988888899999999999999998854444 788899999999998877643322221
Q ss_pred eeeccccCcccccccccccCCccEEEccCCccccCCcccccccccccEEeccCCccccccCccccccCCCceEeCCCccc
Q 037249 310 FYLDLFNNSFSGSISHFCYQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVGENEF 389 (420)
Q Consensus 310 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 389 (420)
.+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++
T Consensus 345 -----------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 345 -----------------NLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp -----------------TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred -----------------CcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCc
Confidence 247899999999999977788999999999999999999966666778999999999999999
Q ss_pred ccccc
Q 037249 390 VGNIS 394 (420)
Q Consensus 390 ~~~~~ 394 (420)
++..|
T Consensus 408 ~~~~~ 412 (455)
T 3v47_A 408 DCSCP 412 (455)
T ss_dssp CCCTT
T ss_pred ccCCC
Confidence 88877
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.3e-34 Score=274.07 Aligned_cols=355 Identities=24% Similarity=0.257 Sum_probs=251.0
Q ss_pred CCCCCccCCCCCCcEEecccCCCCCCCchhhhhcccc-------------CceeecCCCcccCCCCCCCCCCCCccEEEe
Q 037249 4 GKVNPSLLDLNHLSYLGLSFNDFQGVQIPRFIGSIRN-------------LRYLNLSDTQFVGMIPPPLGNLSNLQSLDL 70 (420)
Q Consensus 4 ~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~-------------L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 70 (420)
|++|+++.++++|++|++++|.+.+. +|..++.+.+ +++|++++|.+++ +|.. .++|++|++
T Consensus 24 ~~iP~~i~~L~~L~~L~l~~n~~~~~-~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~---~~~L~~L~l 98 (454)
T 1jl5_A 24 TEMPVEAENVKSKTEYYNAWSEWERN-APPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL---PPHLESLVA 98 (454)
T ss_dssp ----------CCHHHHHHHHHHHHHT-SCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC---CTTCSEEEC
T ss_pred hhCChhHhcccchhhhhccCCccccc-CCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCC---cCCCCEEEc
Confidence 77888888888999998888876554 6666666655 4888888888763 4442 368899999
Q ss_pred ecccccccccccccCCCcccEEEcccccCCCccchhhhhCCCCCCcEEEccCCCCCCCCchhhccCCCCCEEEccCCcCC
Q 037249 71 SLNYLYVENFLWLSGLSFLEQLDLCYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQFD 150 (420)
Q Consensus 71 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 150 (420)
++|.+...+. ...+|+.|++++|.+...+.. .++|++|++++|++..++ .+..+++|++|++++|.++
T Consensus 99 ~~n~l~~lp~----~~~~L~~L~l~~n~l~~l~~~------~~~L~~L~L~~n~l~~lp--~~~~l~~L~~L~l~~N~l~ 166 (454)
T 1jl5_A 99 SCNSLTELPE----LPQSLKSLLVDNNNLKALSDL------PPLLEYLGVSNNQLEKLP--ELQNSSFLKIIDVDNNSLK 166 (454)
T ss_dssp CSSCCSSCCC----CCTTCCEEECCSSCCSCCCSC------CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCS
T ss_pred cCCcCCcccc----ccCCCcEEECCCCccCcccCC------CCCCCEEECcCCCCCCCc--ccCCCCCCCEEECCCCcCc
Confidence 9888776432 347899999999988776531 268999999999998866 4899999999999999886
Q ss_pred CCCCCCCCCCChhhhhccccccccccCCC-CccccccccccCCcEEeeccCccc-------ceeEEEeecCcccccchhh
Q 037249 151 NSLIPGWGPIPSWLYRLTHFEQLSVADRP-RRIPRSMASLCNLRTIYLSGCVSK-------ELEILVLQSSSISGHLTEQ 222 (420)
Q Consensus 151 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~~~~~~-------~l~~L~l~~~~~~~~~~~~ 222 (420)
. ++.. ..+|+.|+++++. ..+| .++.+++|+.|++++|.+. .++.|++++|.+. .++ .
T Consensus 167 ~--------lp~~---~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~-~lp-~ 232 (454)
T 1jl5_A 167 K--------LPDL---PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILE-ELP-E 232 (454)
T ss_dssp C--------CCCC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCS-SCC-C
T ss_pred c--------cCCC---cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCC-ccc-c
Confidence 4 2322 2489999999988 5555 6889999999999999763 6889999999988 445 3
Q ss_pred hhcCCCCCEEECCCcccccCCccchhhccCCcEeecCCccccCccchhhhcccCccceEeecCCccceecCCCCCCccce
Q 037249 223 IGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQL 302 (420)
Q Consensus 223 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~ 302 (420)
+..+++|+.|++++|++.+. +.. +++|++|++++|.+++ ++. ..++|+.+++++|.+...... ...+
T Consensus 233 ~~~l~~L~~L~l~~N~l~~l-~~~---~~~L~~L~l~~N~l~~-l~~----~~~~L~~L~ls~N~l~~l~~~----~~~L 299 (454)
T 1jl5_A 233 LQNLPFLTTIYADNNLLKTL-PDL---PPSLEALNVRDNYLTD-LPE----LPQSLTFLDVSENIFSGLSEL----PPNL 299 (454)
T ss_dssp CTTCTTCCEEECCSSCCSSC-CSC---CTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSEESCC----CTTC
T ss_pred cCCCCCCCEEECCCCcCCcc-ccc---ccccCEEECCCCcccc-cCc----ccCcCCEEECcCCccCcccCc----CCcC
Confidence 88899999999999999875 332 4789999999999874 443 247899999999988764321 1233
Q ss_pred eeecccceeeccccCcccccccccccCCccEEEccCCccccCCcccccccccccEEeccCCccccccCccccccCCCceE
Q 037249 303 VQLGLRSFYLDLFNNSFSGSISHFCYQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMIL 382 (420)
Q Consensus 303 ~~l~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 382 (420)
+ .+++++|.+.+.... .++|++|++++|++++ +|.. +++|+.|++++|.++ .+|. .+++|++|
T Consensus 300 ~-------~L~l~~N~l~~i~~~--~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L 362 (454)
T 1jl5_A 300 Y-------YLNASSNEIRSLCDL--PPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQL 362 (454)
T ss_dssp C-------EEECCSSCCSEECCC--CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEE
T ss_pred C-------EEECcCCcCCcccCC--cCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEE
Confidence 3 677788888764321 2589999999999984 5543 589999999999998 6666 47899999
Q ss_pred eCCCccccc--ccchhhhhcC-------------CCceEEEeecccccc--CCCC
Q 037249 383 DVGENEFVG--NISTWFGERF-------------SRVVVLILRSNQFRG--LLPT 420 (420)
Q Consensus 383 ~l~~n~~~~--~~~~~l~~~~-------------~~L~~L~l~~~~~~~--~~~~ 420 (420)
++++|++++ .+|..+.. + ++|++|++++|++++ .||.
T Consensus 363 ~L~~N~l~~l~~ip~~l~~-L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~ 416 (454)
T 1jl5_A 363 HVEYNPLREFPDIPESVED-LRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPE 416 (454)
T ss_dssp ECCSSCCSSCCCCCTTCCE-EECCC------------------------------
T ss_pred ECCCCCCCcCCCChHHHHh-hhhcccccccccccCcCCEEECCCCcCCccccchh
Confidence 999999988 67777664 5 789999999999988 7773
No 27
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.7e-33 Score=278.24 Aligned_cols=400 Identities=19% Similarity=0.169 Sum_probs=280.4
Q ss_pred CCCCccCCCCCC---cEEecccCCCCCCCchhhhhccccCceeecCCCcccCCCCCCCCCCCCccEEEeecccccccccc
Q 037249 5 KVNPSLLDLNHL---SYLGLSFNDFQGVQIPRFIGSIRNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENFL 81 (420)
Q Consensus 5 ~l~~~~~~~~~L---~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 81 (420)
++|++...|... +..+.++..++ .+|..+. +++++||+++|+++...+.+|.++++|++|++++|.+...+..
T Consensus 19 ~~p~~~~~c~~~~~~~~~~c~~~~l~--~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~ 94 (635)
T 4g8a_A 19 SIPESWEPCVEVVPNITYQCMELNFY--KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 94 (635)
T ss_dssp ------CCSEEEETTTEEECTTSCCS--SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCCCccccCCCCEEECCCCCcC--ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChh
Confidence 467766665432 34566665666 4554442 5799999999999977778899999999999999999999888
Q ss_pred cccCCCcccEEEcccccCCCccchhhhhCCCCCCcEEEccCCCCCCCCchhhccCCCCCEEEccCCcCCCCCCCCCCCCC
Q 037249 82 WLSGLSFLEQLDLCYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIP 161 (420)
Q Consensus 82 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 161 (420)
+|.++++|++|++++|++...+. ..+.++++|++|++++|++..+++..+.++++|++|++++|.+.. ...+
T Consensus 95 ~f~~L~~L~~L~Ls~N~l~~l~~--~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~------~~~~ 166 (635)
T 4g8a_A 95 AYQSLSHLSTLILTGNPIQSLAL--GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS------FKLP 166 (635)
T ss_dssp TTTTCTTCCEEECTTCCCCEECG--GGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC------CCCC
T ss_pred HhcCCCCCCEEEccCCcCCCCCH--HHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCcccc------CCCc
Confidence 99999999999999999987753 357889999999999999999988889999999999999999864 3356
Q ss_pred hhhhhccccccccccCCC-C-ccccccccccCCc----EEeeccCcc---------------------------------
Q 037249 162 SWLYRLTHFEQLSVADRP-R-RIPRSMASLCNLR----TIYLSGCVS--------------------------------- 202 (420)
Q Consensus 162 ~~l~~~~~L~~L~l~~~~-~-~~~~~~~~~~~L~----~L~l~~~~~--------------------------------- 202 (420)
..+..+++|+.|+++++. . ..+..+..+.+++ .++++.+.+
T Consensus 167 ~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~ 246 (635)
T 4g8a_A 167 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQ 246 (635)
T ss_dssp GGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHH
T ss_pred hhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhc
Confidence 788889999999998886 2 2233443332221 222222211
Q ss_pred -----------------------------------------------------------cceeEEEeecCcccccchhhh
Q 037249 203 -----------------------------------------------------------KELEILVLQSSSISGHLTEQI 223 (420)
Q Consensus 203 -----------------------------------------------------------~~l~~L~l~~~~~~~~~~~~l 223 (420)
..++.+.+.++.+.. ...+
T Consensus 247 ~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~--~~~~ 324 (635)
T 4g8a_A 247 GLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIER--VKDF 324 (635)
T ss_dssp TTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEE--CGGG
T ss_pred CCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccc--cccc
Confidence 011112222221111 1123
Q ss_pred hcCCCCCEEECCCcccccCCc-------------------cchhhccCCcEeecCCccccCccc-hhhhcccCccceEee
Q 037249 224 GHFKNLDTLDLGNNSIVGLVP-------------------LSLNELSKLRILHLPDNKLNGTLF-EIHFVNLTKLSVSSV 283 (420)
Q Consensus 224 ~~~~~L~~L~l~~~~~~~~~~-------------------~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~~~L~~l~l 283 (420)
.....++.+++.+|.+..... .....+++|+.+++++|.+..... ...+..+.+|+.+++
T Consensus 325 ~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~ 404 (635)
T 4g8a_A 325 SYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDL 404 (635)
T ss_dssp GSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEEC
T ss_pred ccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhc
Confidence 344566777777766544321 122346778888888877642211 113445666777766
Q ss_pred cCCccceecCCCCCCccceeeecccce------------------eeccccCccccccccc--ccCCccEEEccCCccc-
Q 037249 284 NENNLTLKVNHDWVPPFQLVQLGLRSF------------------YLDLFNNSFSGSISHF--CYQNLMLLTLSNNKFT- 342 (420)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~l~~~~~------------------~l~l~~~~~~~~~~~~--~~~~L~~L~l~~~~l~- 342 (420)
..+...... ..+.....++.+.+..+ .++++.|.+.+..+.. .++++++|++++|.+.
T Consensus 405 ~~~~~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~ 483 (635)
T 4g8a_A 405 SFNGVITMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 483 (635)
T ss_dssp CSCSEEEEC-SCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGG
T ss_pred ccccccccc-ccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhccccc
Confidence 666554332 23334444444433322 4667777777666544 5689999999999854
Q ss_pred cCCcccccccccccEEeccCCccccccCccccccCCCceEeCCCcccccccchhhhhcCCCceEEEeeccccccCCCC
Q 037249 343 GNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVGENEFVGNISTWFGERFSRVVVLILRSNQFRGLLPT 420 (420)
Q Consensus 343 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~ 420 (420)
...|..|..+++|++|++++|++++..|..|+.+++|++|+|++|++++..+..+.. +++|++|++++|++++..|.
T Consensus 484 ~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~-l~~L~~L~Ls~N~l~~~~~~ 560 (635)
T 4g8a_A 484 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC-LNSLQVLDYSLNHIMTSKKQ 560 (635)
T ss_dssp GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTT-CTTCCEEECTTSCCCBCCSS
T ss_pred ccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhC-CCCCCEEECCCCcCCCCCHH
Confidence 457788999999999999999999888999999999999999999999877777775 99999999999999988763
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=6.2e-33 Score=264.83 Aligned_cols=329 Identities=29% Similarity=0.377 Sum_probs=249.3
Q ss_pred CCCccCCCCCCcEEecccCCCCCCCchhhhhccccCceeecCCCcccCCCCCCCCCCCCccEEEeecccccccccccccC
Q 037249 6 VNPSLLDLNHLSYLGLSFNDFQGVQIPRFIGSIRNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENFLWLSG 85 (420)
Q Consensus 6 l~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 85 (420)
+| .+..+++|++|++++|.+.+. +. +..+++|++|++++|.+....+ +.++++|++|++++|.+...+. +..
T Consensus 61 l~-~~~~l~~L~~L~Ls~n~l~~~--~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~ 132 (466)
T 1o6v_A 61 ID-GVEYLNNLTQINFSNNQLTDI--TP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKN 132 (466)
T ss_dssp CT-TGGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTT
T ss_pred Cc-chhhhcCCCEEECCCCccCCc--hh-hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH--HcC
Confidence 54 478899999999999998844 43 8899999999999999885443 8999999999999999877654 889
Q ss_pred CCcccEEEcccccCCCccchhhhhCCCCCCcEEEccCCCCCCCCchhhccCCCCCEEEccCCcCCCCCCCCCCCCChhhh
Q 037249 86 LSFLEQLDLCYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSWLY 165 (420)
Q Consensus 86 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~ 165 (420)
+++|++|++++|.+...+ .+..+++|++|++++ .+.... .+..+++|++|++++|.+.. + ..+.
T Consensus 133 l~~L~~L~l~~n~l~~~~----~~~~l~~L~~L~l~~-~~~~~~--~~~~l~~L~~L~l~~n~l~~--------~-~~l~ 196 (466)
T 1o6v_A 133 LTNLNRLELSSNTISDIS----ALSGLTSLQQLSFGN-QVTDLK--PLANLTTLERLDISSNKVSD--------I-SVLA 196 (466)
T ss_dssp CTTCSEEEEEEEEECCCG----GGTTCTTCSEEEEEE-SCCCCG--GGTTCTTCCEEECCSSCCCC--------C-GGGG
T ss_pred CCCCCEEECCCCccCCCh----hhccCCcccEeecCC-cccCch--hhccCCCCCEEECcCCcCCC--------C-hhhc
Confidence 999999999999988765 367899999999974 455444 38899999999999998854 2 4578
Q ss_pred hccccccccccCCCCccccccccccCCcEEeeccCcccceeEEEeecCcccccchhhhhcCCCCCEEECCCcccccCCcc
Q 037249 166 RLTHFEQLSVADRPRRIPRSMASLCNLRTIYLSGCVSKELEILVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPL 245 (420)
Q Consensus 166 ~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 245 (420)
.+++|+.|+++++.-.....++.+++|+.|++++|.+..+ ..+..+++|+.|++++|.+.+..+
T Consensus 197 ~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~---------------~~l~~l~~L~~L~l~~n~l~~~~~- 260 (466)
T 1o6v_A 197 KLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI---------------GTLASLTNLTDLDLANNQISNLAP- 260 (466)
T ss_dssp GCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC---------------GGGGGCTTCSEEECCSSCCCCCGG-
T ss_pred cCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccc---------------hhhhcCCCCCEEECCCCccccchh-
Confidence 8999999999998832222377788999999988765321 235566777777777777766532
Q ss_pred chhhccCCcEeecCCccccCccchhhhcccCccceEeecCCccceecCCCCCCccceeeecccceeeccccCcccccccc
Q 037249 246 SLNELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLGLRSFYLDLFNNSFSGSISH 325 (420)
Q Consensus 246 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~ 325 (420)
+..+++|++|++++|.+++..+ +..+++|+.|++++|.+....+ +.....++ .+++++|.+.+..+.
T Consensus 261 -~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~-------~L~L~~n~l~~~~~~ 327 (466)
T 1o6v_A 261 -LSGLTKLTELKLGANQISNISP---LAGLTALTNLELNENQLEDISP--ISNLKNLT-------YLTLYFNNISDISPV 327 (466)
T ss_dssp -GTTCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCSCCGG--GGGCTTCS-------EEECCSSCCSCCGGG
T ss_pred -hhcCCCCCEEECCCCccCcccc---ccCCCccCeEEcCCCcccCchh--hcCCCCCC-------EEECcCCcCCCchhh
Confidence 5666777777777777664322 5667777777777776654433 22222332 566667777766665
Q ss_pred cccCCccEEEccCCccccCCcccccccccccEEeccCCccccccCccccccCCCceEeCCCccccc
Q 037249 326 FCYQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVGENEFVG 391 (420)
Q Consensus 326 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 391 (420)
..+++|++|++++|++++. ..+..+++|+.|++++|++.+..| +..+++|+.|++++|++++
T Consensus 328 ~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 328 SSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp GGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred ccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 5678899999999988843 467888899999999998886655 7888899999999988876
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=5.1e-34 Score=270.31 Aligned_cols=345 Identities=18% Similarity=0.137 Sum_probs=229.1
Q ss_pred CCCCCccCCCCCCcEEecccCCCCCCCchhhhhccccCceeecCCCcccCCCCCCCCCCCCccEEEeecccccccccccc
Q 037249 4 GKVNPSLLDLNHLSYLGLSFNDFQGVQIPRFIGSIRNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENFLWL 83 (420)
Q Consensus 4 ~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 83 (420)
+.-+..+.++++|++|++++|.+++ ++ .++.+++|++|++++|.+++ ++ ++.+++|++|++++|.+...+ +
T Consensus 32 ~~~~~~~~~l~~L~~L~Ls~n~l~~--~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~~---~ 102 (457)
T 3bz5_A 32 ATDTISEEQLATLTSLDCHNSSITD--MT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNLD---V 102 (457)
T ss_dssp TTSEEEHHHHTTCCEEECCSSCCCC--CT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC---C
T ss_pred cccccChhHcCCCCEEEccCCCccc--Ch-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCceee---c
Confidence 3445578889999999999999884 44 68899999999999999885 34 889999999999999987763 7
Q ss_pred cCCCcccEEEcccccCCCccchhhhhCCCCCCcEEEccCCCCCCCCchhhccCCCCCEEEccCCcCCCCCCCCCCCCChh
Q 037249 84 SGLSFLEQLDLCYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSW 163 (420)
Q Consensus 84 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 163 (420)
.++++|++|++++|.+...+ +..+++|++|++++|++..++ +..+++|++|++++|.... .+ .
T Consensus 103 ~~l~~L~~L~L~~N~l~~l~-----~~~l~~L~~L~l~~N~l~~l~---l~~l~~L~~L~l~~n~~~~-------~~--~ 165 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNKLTKLD-----VSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKIT-------KL--D 165 (457)
T ss_dssp TTCTTCCEEECCSSCCSCCC-----CTTCTTCCEEECTTSCCSCCC---CTTCTTCCEEECTTCSCCC-------CC--C
T ss_pred CCCCcCCEEECCCCcCCeec-----CCCCCcCCEEECCCCccceec---cccCCcCCEEECCCCCccc-------cc--c
Confidence 88999999999999988753 678999999999999998863 6789999999999995432 12 3
Q ss_pred hhhccccccccccCCC-CccccccccccCCcEEeeccCcc--------cceeEEEeecCcccccchhhhhcCCCCCEEEC
Q 037249 164 LYRLTHFEQLSVADRP-RRIPRSMASLCNLRTIYLSGCVS--------KELEILVLQSSSISGHLTEQIGHFKNLDTLDL 234 (420)
Q Consensus 164 l~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~~~~~--------~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 234 (420)
+..+++|+.|+++++. ..++ +..+++|+.|++++|.+ +.++.|++++|.+++. | +..+++|+.|++
T Consensus 166 ~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l 240 (457)
T 3bz5_A 166 VTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDC 240 (457)
T ss_dssp CTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEEC
T ss_pred cccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCccccc-C--ccccCCCCEEEe
Confidence 5678899999999988 4454 77888899998888765 3445555555555542 2 444555555555
Q ss_pred CCcccccCCccchhhcc-------CCcEeecCCccccCccchhhhcccCccceEeecCCccceecCCCCCCccceeeecc
Q 037249 235 GNNSIVGLVPLSLNELS-------KLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLGL 307 (420)
Q Consensus 235 ~~~~~~~~~~~~~~~~~-------~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~ 307 (420)
++|++.+..+..+..+. +|+.|++++|.+.+.++ +..+++|+.|++++|......+... ..++.
T Consensus 241 ~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~---~~~l~~L~~L~Ls~n~~l~~l~~~~---~~L~~--- 311 (457)
T 3bz5_A 241 SVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ---AEGCRKIKELDVTHNTQLYLLDCQA---AGITE--- 311 (457)
T ss_dssp CSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE---CTTCTTCCCCCCTTCTTCCEEECTT---CCCSC---
T ss_pred eCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc---ccccccCCEEECCCCcccceeccCC---CcceE---
Confidence 55555544222222111 22333333333333332 2344555555555554332222111 11111
Q ss_pred cceeeccccCcccccccccccCCccEEEccCCccccCCcccccccccccEEeccCCccccccCccccccCCCceEeCCCc
Q 037249 308 RSFYLDLFNNSFSGSISHFCYQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVGEN 387 (420)
Q Consensus 308 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 387 (420)
++++ ..++|++|++++|++++. .+..+++|+.|++++|++.+ ++.|..|++++|
T Consensus 312 ----L~l~-----------~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n 365 (457)
T 3bz5_A 312 ----LDLS-----------QNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNN 365 (457)
T ss_dssp ----CCCT-----------TCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGT
T ss_pred ----echh-----------hcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--------ccccccccccCC
Confidence 1111 225777888888887753 26777788888888887763 234555556666
Q ss_pred ccccccchhhhhcCCCceEEEeeccccccCCCC
Q 037249 388 EFVGNISTWFGERFSRVVVLILRSNQFRGLLPT 420 (420)
Q Consensus 388 ~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~ 420 (420)
.+.+. . .+..|+.+++++|+++|.||.
T Consensus 366 ~l~g~-----~-~~~~l~~l~l~~N~l~g~ip~ 392 (457)
T 3bz5_A 366 NFEAE-----G-QTITMPKETLTNNSLTIAVSP 392 (457)
T ss_dssp SEEEE-----E-EEEECCCBCCBTTBEEEECCT
T ss_pred cEEec-----c-eeeecCccccccCcEEEEcCh
Confidence 55543 1 245666777777777777773
No 30
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2e-33 Score=274.70 Aligned_cols=373 Identities=20% Similarity=0.192 Sum_probs=257.3
Q ss_pred CCCCcEEecccCCCCCCCchhhhhccccCceeecCCCcccCCCCCCCCCCCCccEEEeecccccccccccccCCCcccEE
Q 037249 13 LNHLSYLGLSFNDFQGVQIPRFIGSIRNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENFLWLSGLSFLEQL 92 (420)
Q Consensus 13 ~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 92 (420)
+...++++++++.++ .+|..+. +++++|++++|.+....+.+|.++++|++|++++|.+....+.++.++++|++|
T Consensus 30 ~~~~~~l~ls~~~L~--~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 105 (562)
T 3a79_B 30 NELESMVDYSNRNLT--HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL 105 (562)
T ss_dssp ---CCEEECTTSCCC--SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred cCCCcEEEcCCCCCc--cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEE
Confidence 344467788877776 3554443 677888888887776555677778888888888887777767777777888888
Q ss_pred EcccccCCCccchhhhhCCCCCCcEEEccCCCCCCCC-chhhccCCCCCEEEccCCcCCCCCCCCCCCCChhhhhcccc-
Q 037249 93 DLCYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLP-PLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSWLYRLTHF- 170 (420)
Q Consensus 93 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L- 170 (420)
++++|.+...+.. .+++|++|++++|++..++ +..+.++++|++|++++|.+.. ..+..+++|
T Consensus 106 ~Ls~N~l~~lp~~-----~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~----------~~~~~l~~L~ 170 (562)
T 3a79_B 106 DVSHNRLQNISCC-----PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ----------LDLLPVAHLH 170 (562)
T ss_dssp ECTTSCCCEECSC-----CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT----------TTTGGGTTSC
T ss_pred ECCCCcCCccCcc-----ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc----------Cchhhhhhce
Confidence 8888777765532 5777888888888777654 3567777888888888777643 122333444
Q ss_pred -ccccccCCCC----cccccc--------------------------ccccCCcEEeeccCc---------------ccc
Q 037249 171 -EQLSVADRPR----RIPRSM--------------------------ASLCNLRTIYLSGCV---------------SKE 204 (420)
Q Consensus 171 -~~L~l~~~~~----~~~~~~--------------------------~~~~~L~~L~l~~~~---------------~~~ 204 (420)
+.|+++++.- ..+..+ ..+++|+.++++++. .+.
T Consensus 171 L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~ 250 (562)
T 3a79_B 171 LSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPT 250 (562)
T ss_dssp EEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSS
T ss_pred eeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCc
Confidence 6666666531 223333 234566666666652 245
Q ss_pred eeEEEeecCcccccchhh---hhcCCCCCEEECCCcccccCCccch-----hhc--------------------------
Q 037249 205 LEILVLQSSSISGHLTEQ---IGHFKNLDTLDLGNNSIVGLVPLSL-----NEL-------------------------- 250 (420)
Q Consensus 205 l~~L~l~~~~~~~~~~~~---l~~~~~L~~L~l~~~~~~~~~~~~~-----~~~-------------------------- 250 (420)
++.+++.++.+.+..... ....++|++|++++|.+.+..|..+ ..+
T Consensus 251 L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~ 330 (562)
T 3a79_B 251 LLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAE 330 (562)
T ss_dssp CEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHT
T ss_pred ceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhcc
Confidence 555666555544321111 1123488999999998875555443 222
Q ss_pred cCCcEeecCCccccCccchhhhcccCccceEeecCCccceecCCCCCCccceeeecccceeeccccCccccccc----cc
Q 037249 251 SKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLGLRSFYLDLFNNSFSGSIS----HF 326 (420)
Q Consensus 251 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~----~~ 326 (420)
.+|++|++++|.+.... ....+++|+.|++++|.+....+..+.....++ ++++++|.+.+... ..
T Consensus 331 ~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~-------~L~L~~N~l~~~~~~~~~~~ 400 (562)
T 3a79_B 331 MNIKMLSISDTPFIHMV---CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQ-------TLILQRNGLKNFFKVALMTK 400 (562)
T ss_dssp CCCSEEEEESSCCCCCC---CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCC-------EEECCSSCCCBTTHHHHTTT
T ss_pred CcceEEEccCCCccccc---CccCCCCceEEECCCCccccchhhhhcccCCCC-------EEECCCCCcCCcccchhhhc
Confidence 34666666666654211 125788999999999998876677776666666 67788888887432 22
Q ss_pred ccCCccEEEccCCccccCCc-ccccccccccEEeccCCccccccCccccccCCCceEeCCCcccccccchhhhhcCCCce
Q 037249 327 CYQNLMLLTLSNNKFTGNLP-NSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVGENEFVGNISTWFGERFSRVV 405 (420)
Q Consensus 327 ~~~~L~~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~~L~ 405 (420)
.+++|++|++++|++++.+| ..+..+++|++|++++|.+++..|..+. ++|++|++++|+++ .+|..+. .+++|+
T Consensus 401 ~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~-~l~~L~ 476 (562)
T 3a79_B 401 NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVT-HLQALQ 476 (562)
T ss_dssp TCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTT-SSCCCS
T ss_pred CCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhc-CCCCCC
Confidence 66899999999999997344 4688899999999999999877776654 79999999999997 7787777 499999
Q ss_pred EEEeeccccccCCC
Q 037249 406 VLILRSNQFRGLLP 419 (420)
Q Consensus 406 ~L~l~~~~~~~~~~ 419 (420)
+|++++|+++ .||
T Consensus 477 ~L~L~~N~l~-~l~ 489 (562)
T 3a79_B 477 ELNVASNQLK-SVP 489 (562)
T ss_dssp EEECCSSCCC-CCC
T ss_pred EEECCCCCCC-CCC
Confidence 9999999998 565
No 31
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=9.2e-33 Score=253.77 Aligned_cols=306 Identities=19% Similarity=0.237 Sum_probs=208.8
Q ss_pred hccccCceeecCCCcccCCCCCCCCCCCCccEEEeecccccccccccccCCCcccEEEcccccCCCccchhhhhCCCCCC
Q 037249 36 GSIRNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENFLWLSGLSFLEQLDLCYVNLSKASDWLLVANTLPSL 115 (420)
Q Consensus 36 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 115 (420)
..+++|++|+++++.+.. ++ .+..+++|++|++++|.+...+. +..+++|++|++++|.+...+ .+..+++|
T Consensus 41 ~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~----~~~~l~~L 112 (347)
T 4fmz_A 41 EELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDIS----ALQNLTNL 112 (347)
T ss_dssp HHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG----GGTTCTTC
T ss_pred hhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCch----HHcCCCcC
Confidence 455666666666666542 33 25566666666666666554433 556666666666666665543 34566666
Q ss_pred cEEEccCCCCCCCCchhhccCCCCCEEEccCCcCCCCCCCCCCCCChhhhhccccccccccCCCCccccccccccCCcEE
Q 037249 116 VELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSWLYRLTHFEQLSVADRPRRIPRSMASLCNLRTI 195 (420)
Q Consensus 116 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L 195 (420)
++|++++|.+...+. +..+++|++|++++|.... ....+..+++|+.|+++++.......+..+++|++|
T Consensus 113 ~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~--------~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L 182 (347)
T 4fmz_A 113 RELYLNEDNISDISP--LANLTKMYSLNLGANHNLS--------DLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSL 182 (347)
T ss_dssp SEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCC--------CCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEE
T ss_pred CEEECcCCcccCchh--hccCCceeEEECCCCCCcc--------cccchhhCCCCcEEEecCCCcCCchhhccCCCCCEE
Confidence 666666666665543 5666666666666664322 223355566666666666552222226677777777
Q ss_pred eeccCcccceeEEEeecCcccccchhhhhcCCCCCEEECCCcccccCCccchhhccCCcEeecCCccccCccchhhhccc
Q 037249 196 YLSGCVSKELEILVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNGTLFEIHFVNL 275 (420)
Q Consensus 196 ~l~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 275 (420)
++++|.+.. ..+ +..+++|+.+++++|.+.+..+ +..+++|++|++++|.+++..+ +..+
T Consensus 183 ~l~~n~l~~-------------~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~---~~~l 242 (347)
T 4fmz_A 183 SLNYNQIED-------------ISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP---LANL 242 (347)
T ss_dssp ECTTSCCCC-------------CGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG---GTTC
T ss_pred EccCCcccc-------------ccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc---hhcC
Confidence 777765432 211 6677888888888888887633 7778888888888888874332 6778
Q ss_pred CccceEeecCCccceecCCCCCCccceeeecccceeeccccCcccccccccccCCccEEEccCCccccCCcccccccccc
Q 037249 276 TKLSVSSVNENNLTLKVNHDWVPPFQLVQLGLRSFYLDLFNNSFSGSISHFCYQNLMLLTLSNNKFTGNLPNSLGSLTSL 355 (420)
Q Consensus 276 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L 355 (420)
++|+.|++++|.+... .....+++|++|++++|++++. ..+..+++|
T Consensus 243 ~~L~~L~l~~n~l~~~-------------------------------~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L 289 (347)
T 4fmz_A 243 SQLTWLEIGTNQISDI-------------------------------NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQL 289 (347)
T ss_dssp TTCCEEECCSSCCCCC-------------------------------GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTC
T ss_pred CCCCEEECCCCccCCC-------------------------------hhHhcCCCcCEEEccCCccCCC--hhhcCCCCC
Confidence 8888888887766521 1112347899999999999843 468899999
Q ss_pred cEEeccCCccccccCccccccCCCceEeCCCcccccccchhhhhcCCCceEEEeeccccc
Q 037249 356 VSLHLHKNIFSGTIPISLKNCTALMILDVGENEFVGNISTWFGERFSRVVVLILRSNQFR 415 (420)
Q Consensus 356 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~~L~~L~l~~~~~~ 415 (420)
+.|++++|.+.+..++.++.+++|++|++++|++++..| +.. +++|++|++++|+++
T Consensus 290 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~-l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 290 NSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LAS-LSKMDSADFANQVIK 346 (347)
T ss_dssp SEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGG-CTTCSEESSSCC---
T ss_pred CEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhh-hhccceeehhhhccc
Confidence 999999999998888889999999999999999987666 554 999999999999986
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.2e-33 Score=270.87 Aligned_cols=319 Identities=16% Similarity=0.123 Sum_probs=181.4
Q ss_pred cEEecccCCCCCCCchhhhhccccCceeecCCCcccCCCCCCCCCCCCccEEEeecccccccccccccCCCcccEEEccc
Q 037249 17 SYLGLSFNDFQGVQIPRFIGSIRNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENFLWLSGLSFLEQLDLCY 96 (420)
Q Consensus 17 ~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 96 (420)
+.++.++..++ .+|..+ .+++++|++++|.++...+..|.++++|++|++++|.+....+..+.++++|+.|++++
T Consensus 14 ~~v~c~~~~l~--~ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFV--AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCS--SCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC--cCCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 45666666655 344433 25677777777777766666777777777777777777766666677777777777777
Q ss_pred ccCCCccchhhhhCCCCCCcEEEccCCCCCCCCchhhccCCCCCEEEccCCcCCCCCCCCCCCCChhhhhcccccccccc
Q 037249 97 VNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSWLYRLTHFEQLSVA 176 (420)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 176 (420)
|.+...+. ..+..+++|++|++++|.+....+..+..+++|++|++++|.+... .+..+..+++|+.|+++
T Consensus 90 n~l~~~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-------~~~~~~~l~~L~~L~l~ 160 (477)
T 2id5_A 90 NRLKLIPL--GVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYI-------SHRAFSGLNSLEQLTLE 160 (477)
T ss_dssp SCCCSCCT--TSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEE-------CTTSSTTCTTCCEEEEE
T ss_pred CcCCccCc--ccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCcccee-------ChhhccCCCCCCEEECC
Confidence 77766542 2345677777777777777766666677777777777777766421 11223333444444444
Q ss_pred CCC-Cccc-cccccccCCcEEeeccCcccceeEEEeecCcccccchhhhhcCCCCCEEECCCcccccCCccchhhccCCc
Q 037249 177 DRP-RRIP-RSMASLCNLRTIYLSGCVSKELEILVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLR 254 (420)
Q Consensus 177 ~~~-~~~~-~~~~~~~~L~~L~l~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 254 (420)
++. ..++ ..+..+++|+.|++++|.+ .+..+..+..+++|+.|++++|...+..+.......+|+
T Consensus 161 ~n~l~~~~~~~l~~l~~L~~L~l~~n~i-------------~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 227 (477)
T 2id5_A 161 KCNLTSIPTEALSHLHGLIVLRLRHLNI-------------NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLT 227 (477)
T ss_dssp SCCCSSCCHHHHTTCTTCCEEEEESCCC-------------CEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCS
T ss_pred CCcCcccChhHhcccCCCcEEeCCCCcC-------------cEeChhhcccCcccceeeCCCCccccccCcccccCcccc
Confidence 333 1111 2334444444444444332 223333444555555555555554443333333344555
Q ss_pred EeecCCccccCccchhhhcccCccceEeecCCccceecCCCCCCccceeeecccceeeccccCcccccccccccCCccEE
Q 037249 255 ILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLGLRSFYLDLFNNSFSGSISHFCYQNLMLL 334 (420)
Q Consensus 255 ~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~L~~L 334 (420)
+|++++|.++ .++...+..+++|+.|++++|.+.......+. .+++|++|
T Consensus 228 ~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-----------------------------~l~~L~~L 277 (477)
T 2id5_A 228 SLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLH-----------------------------ELLRLQEI 277 (477)
T ss_dssp EEEEESSCCC-SCCHHHHTTCTTCCEEECCSSCCCEECTTSCT-----------------------------TCTTCCEE
T ss_pred EEECcCCccc-ccCHHHhcCccccCeeECCCCcCCccChhhcc-----------------------------ccccCCEE
Confidence 5555555554 33333455555555555555554432222221 12456666
Q ss_pred EccCCccccCCcccccccccccEEeccCCccccccCccccccCCCceEeCCCccccc
Q 037249 335 TLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVGENEFVG 391 (420)
Q Consensus 335 ~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 391 (420)
++++|++++..+..|..+++|+.|++++|.+++..+..+..+++|++|++++|++..
T Consensus 278 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 278 QLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp ECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred ECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence 666666665556666666666666666666664444455666666666666666553
No 33
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.1e-32 Score=255.29 Aligned_cols=322 Identities=20% Similarity=0.198 Sum_probs=236.1
Q ss_pred CCCCCcEEecccCCCCCCCch-hhhhccccCceeecCCCcccCCCCCCCCCCCCccEEEeecccccccccccccCCCccc
Q 037249 12 DLNHLSYLGLSFNDFQGVQIP-RFIGSIRNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENFLWLSGLSFLE 90 (420)
Q Consensus 12 ~~~~L~~L~l~~~~i~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 90 (420)
.++++++|+++++.+. .+| ..+..+++|++|++++|.+....+.+|..+++|++|++++|.+....+..+.++++|+
T Consensus 43 ~l~~l~~l~l~~~~l~--~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMR--KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESCEES--EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred ccCCceEEEecCCchh--hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence 4688899999998887 444 3467889999999999998876777889999999999999998888888888899999
Q ss_pred EEEcccccCCCccchhhhhCCCCCCcEEEccCCCCCCCCchhhccCCCCCEEEccCCcCCCCCCCCCCCCChhhhhcccc
Q 037249 91 QLDLCYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSWLYRLTHF 170 (420)
Q Consensus 91 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L 170 (420)
+|++++|.+...+. ..+..+++|++|++++|.+..+.+..+..+++|++|++++|.++. + .+..+++|
T Consensus 121 ~L~L~~n~l~~l~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--------~--~~~~l~~L 188 (390)
T 3o6n_A 121 VLVLERNDLSSLPR--GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH--------V--DLSLIPSL 188 (390)
T ss_dssp EEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB--------C--CGGGCTTC
T ss_pred EEECCCCccCcCCH--HHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc--------c--cccccccc
Confidence 99999998887653 235678999999999999988887778889999999999988754 1 23445666
Q ss_pred ccccccCCCCccccccccccCCcEEeeccCcccceeEEEeecCcccccchhhhhcCCCCCEEECCCcccccCCccchhhc
Q 037249 171 EQLSVADRPRRIPRSMASLCNLRTIYLSGCVSKELEILVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNEL 250 (420)
Q Consensus 171 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 250 (420)
+.++++++.-. .+...++|+.|++++|.+ ..... ...++|+.|++++|.+.+. ..+..+
T Consensus 189 ~~L~l~~n~l~---~~~~~~~L~~L~l~~n~l-------------~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~~l 247 (390)
T 3o6n_A 189 FHANVSYNLLS---TLAIPIAVEELDASHNSI-------------NVVRG---PVNVELTILKLQHNNLTDT--AWLLNY 247 (390)
T ss_dssp SEEECCSSCCS---EEECCSSCSEEECCSSCC-------------CEEEC---CCCSSCCEEECCSSCCCCC--GGGGGC
T ss_pred ceeeccccccc---ccCCCCcceEEECCCCee-------------eeccc---cccccccEEECCCCCCccc--HHHcCC
Confidence 66666655411 112223455555555443 32211 1236788888888888764 467778
Q ss_pred cCCcEeecCCccccCccchhhhcccCccceEeecCCccceecCCCCCCccceeeecccceeeccccCcccccccccccCC
Q 037249 251 SKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLGLRSFYLDLFNNSFSGSISHFCYQN 330 (420)
Q Consensus 251 ~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~ 330 (420)
++|++|++++|.+++..+. .+..+++|+.|++++|.+....... ..+++
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~------------------------------~~l~~ 296 (390)
T 3o6n_A 248 PGLVEVDLSYNELEKIMYH-PFVKMQRLERLYISNNRLVALNLYG------------------------------QPIPT 296 (390)
T ss_dssp TTCSEEECCSSCCCEEESG-GGTTCSSCCEEECCSSCCCEEECSS------------------------------SCCTT
T ss_pred CCccEEECCCCcCCCcChh-HccccccCCEEECCCCcCcccCccc------------------------------CCCCC
Confidence 8888888888887754444 6777888888888877765321110 12468
Q ss_pred ccEEEccCCccccCCcccccccccccEEeccCCccccccCccccccCCCceEeCCCcccccccchhhhhcCCC
Q 037249 331 LMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVGENEFVGNISTWFGERFSR 403 (420)
Q Consensus 331 L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~~ 403 (420)
|++|++++|+++ .+|..+..+++|++|++++|+++ .++ +..+++|++|++++|++.+.....+.+.+.+
T Consensus 297 L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~-~~~--~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~ 365 (390)
T 3o6n_A 297 LKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWDCNSLRALFRNVAR 365 (390)
T ss_dssp CCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC-CCC--CCTTCCCSEEECCSSCEEHHHHHHHTTTCCT
T ss_pred CCEEECCCCcce-ecCccccccCcCCEEECCCCccc-eeC--chhhccCCEEEcCCCCccchhHHHHHHHHHh
Confidence 999999999988 56777888899999999999987 333 6778899999999998887666555443443
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=9.3e-33 Score=264.73 Aligned_cols=337 Identities=20% Similarity=0.173 Sum_probs=269.7
Q ss_pred CCCCCccCCCCCCcEEecccCCCCCCCchhhhhccccCceeecCCCcccCCCCCCCCCCCCccEEEeecccccccccccc
Q 037249 4 GKVNPSLLDLNHLSYLGLSFNDFQGVQIPRFIGSIRNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENFLWL 83 (420)
Q Consensus 4 ~~l~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 83 (420)
..+|..+. +.+++|++++|.++.. .+..+..+++|++|++++|.+....|.+|.++++|++|++++|.+...+...+
T Consensus 24 ~~ip~~~~--~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 100 (477)
T 2id5_A 24 VAVPEGIP--TETRLLDLGKNRIKTL-NQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVF 100 (477)
T ss_dssp SSCCSCCC--TTCSEEECCSSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSS
T ss_pred CcCCCCCC--CCCcEEECCCCccceE-CHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccc
Confidence 35677664 5899999999999854 46788999999999999999998889999999999999999999998888888
Q ss_pred cCCCcccEEEcccccCCCccchhhhhCCCCCCcEEEccCCCCCCCCchhhccCCCCCEEEccCCcCCCCCCCCCCCCChh
Q 037249 84 SGLSFLEQLDLCYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSW 163 (420)
Q Consensus 84 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 163 (420)
.++++|++|++++|.+..... ..+..+++|++|++++|.+..+.+..+..+++|++|++++|.++. ..+..
T Consensus 101 ~~l~~L~~L~Ls~n~i~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------~~~~~ 171 (477)
T 2id5_A 101 TGLSNLTKLDISENKIVILLD--YMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS-------IPTEA 171 (477)
T ss_dssp TTCTTCCEEECTTSCCCEECT--TTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS-------CCHHH
T ss_pred cCCCCCCEEECCCCccccCCh--hHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc-------cChhH
Confidence 999999999999999877632 356789999999999999998888889999999999999998864 13346
Q ss_pred hhhccccccccccCCC-C-ccccccccccCCcEEeeccCcccceeEEEeecCcccccchhhhhcCCCCCEEECCCccccc
Q 037249 164 LYRLTHFEQLSVADRP-R-RIPRSMASLCNLRTIYLSGCVSKELEILVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVG 241 (420)
Q Consensus 164 l~~~~~L~~L~l~~~~-~-~~~~~~~~~~~L~~L~l~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 241 (420)
+..+++|+.|++.++. . ..+..+..+++|+.|++++|.. .+.++.......+|+.|++++|.+..
T Consensus 172 l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~-------------~~~~~~~~~~~~~L~~L~l~~n~l~~ 238 (477)
T 2id5_A 172 LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY-------------LDTMTPNCLYGLNLTSLSITHCNLTA 238 (477)
T ss_dssp HTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTT-------------CCEECTTTTTTCCCSEEEEESSCCCS
T ss_pred hcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcc-------------ccccCcccccCccccEEECcCCcccc
Confidence 8889999999999987 3 3345677888888888877643 23344444455689999999999998
Q ss_pred CCccchhhccCCcEeecCCccccCccchhhhcccCccceEeecCCccceecCCCCCCccceeeecccceeeccccCcccc
Q 037249 242 LVPLSLNELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLGLRSFYLDLFNNSFSG 321 (420)
Q Consensus 242 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~ 321 (420)
..+..+..+++|+.|++++|.++ .++...+..+++|+.|++++|.+....+..+.
T Consensus 239 ~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~------------------------ 293 (477)
T 2id5_A 239 VPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFR------------------------ 293 (477)
T ss_dssp CCHHHHTTCTTCCEEECCSSCCC-EECTTSCTTCTTCCEEECCSSCCSEECTTTBT------------------------
T ss_pred cCHHHhcCccccCeeECCCCcCC-ccChhhccccccCCEEECCCCccceECHHHhc------------------------
Confidence 76667889999999999999998 45444788999999999999988765443333
Q ss_pred cccccccCCccEEEccCCccccCCcccccccccccEEeccCCccccccCccccccCCCceEeCCCcccccccchh
Q 037249 322 SISHFCYQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVGENEFVGNISTW 396 (420)
Q Consensus 322 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 396 (420)
.+++|++|++++|++++..+..|..+++|+.|++++|++..... ...-......+++.++......|..
T Consensus 294 -----~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~-~~~~~~~~~~~~~~~~~~~C~~p~~ 362 (477)
T 2id5_A 294 -----GLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCR-LLWVFRRRWRLNFNRQQPTCATPEF 362 (477)
T ss_dssp -----TCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG-GHHHHTTTTSSCCTTCCCBEEESGG
T ss_pred -----CcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccc-hHhHHhhhhccccCccCceeCCchH
Confidence 24689999999999997777889999999999999999873322 1111233444556666555555544
No 35
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=5.1e-32 Score=248.81 Aligned_cols=307 Identities=26% Similarity=0.307 Sum_probs=251.8
Q ss_pred ccCCCCCCcEEecccCCCCCCCchhhhhccccCceeecCCCcccCCCCCCCCCCCCccEEEeecccccccccccccCCCc
Q 037249 9 SLLDLNHLSYLGLSFNDFQGVQIPRFIGSIRNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENFLWLSGLSF 88 (420)
Q Consensus 9 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 88 (420)
.+..+++|++|+++++.+.. ++ .+..+++|++|++++|.+.. ++. +..+++|++|++++|.+... ..+..+++
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~--~~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~~--~~~~~l~~ 111 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVAS--IQ-GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITDI--SALQNLTN 111 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCC--CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCC--GGGTTCTT
T ss_pred cchhcccccEEEEeCCcccc--ch-hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccCc--hHHcCCCc
Confidence 34578999999999999874 33 47889999999999999884 444 89999999999999998765 35889999
Q ss_pred ccEEEcccccCCCccchhhhhCCCCCCcEEEccCCCCCCCCchhhccCCCCCEEEccCCcCCCCCCCCCCCCChhhhhcc
Q 037249 89 LEQLDLCYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSWLYRLT 168 (420)
Q Consensus 89 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~ 168 (420)
|++|++++|.+...+. +..+++|++|++++|......+ .+..+++|++|++++|.+.. ++. +..++
T Consensus 112 L~~L~l~~n~i~~~~~----~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~--------~~~-~~~l~ 177 (347)
T 4fmz_A 112 LRELYLNEDNISDISP----LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKD--------VTP-IANLT 177 (347)
T ss_dssp CSEEECTTSCCCCCGG----GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCC--------CGG-GGGCT
T ss_pred CCEEECcCCcccCchh----hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCC--------chh-hccCC
Confidence 9999999999887753 6789999999999996554444 48899999999999998854 333 78899
Q ss_pred ccccccccCCC-CccccccccccCCcEEeeccCcccceeEEEeecCcccccchhhhhcCCCCCEEECCCcccccCCccch
Q 037249 169 HFEQLSVADRP-RRIPRSMASLCNLRTIYLSGCVSKELEILVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSL 247 (420)
Q Consensus 169 ~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 247 (420)
+|+.|+++++. ..++. +..+++|+.+++++|.+. +..+ +..+++|+.|++++|.+.+..+ +
T Consensus 178 ~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~-------------~~~~--~~~~~~L~~L~l~~n~l~~~~~--~ 239 (347)
T 4fmz_A 178 DLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQIT-------------DITP--VANMTRLNSLKIGNNKITDLSP--L 239 (347)
T ss_dssp TCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCC-------------CCGG--GGGCTTCCEEECCSSCCCCCGG--G
T ss_pred CCCEEEccCCccccccc-ccCCCccceeecccCCCC-------------CCch--hhcCCcCCEEEccCCccCCCcc--h
Confidence 99999999998 44443 778888888888876553 2222 7788999999999999998743 8
Q ss_pred hhccCCcEeecCCccccCccchhhhcccCccceEeecCCccceecCCCCCCccceeeecccceeeccccCcccccccccc
Q 037249 248 NELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLGLRSFYLDLFNNSFSGSISHFC 327 (420)
Q Consensus 248 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~ 327 (420)
..+++|++|++++|.+++ ++ .+..+++|+.+++++|.+... .....
T Consensus 240 ~~l~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~l~~n~l~~~-------------------------------~~~~~ 285 (347)
T 4fmz_A 240 ANLSQLTWLEIGTNQISD-IN--AVKDLTKLKMLNVGSNQISDI-------------------------------SVLNN 285 (347)
T ss_dssp TTCTTCCEEECCSSCCCC-CG--GGTTCTTCCEEECCSSCCCCC-------------------------------GGGGG
T ss_pred hcCCCCCEEECCCCccCC-Ch--hHhcCCCcCEEEccCCccCCC-------------------------------hhhcC
Confidence 889999999999999874 32 578899999999998876531 11123
Q ss_pred cCCccEEEccCCccccCCcccccccccccEEeccCCccccccCccccccCCCceEeCCCcccc
Q 037249 328 YQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVGENEFV 390 (420)
Q Consensus 328 ~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 390 (420)
+++|++|++++|++++..+..+..+++|++|++++|++++..| +..+++|++|++++|+++
T Consensus 286 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 286 LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 5789999999999998888899999999999999999996555 889999999999999885
No 36
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=5.4e-32 Score=256.43 Aligned_cols=325 Identities=21% Similarity=0.155 Sum_probs=229.1
Q ss_pred chhhhhccccCceeecCCCcccCCCCCCCCCCCCccEEEeecccccccccccccCCCcccEEEcccccCCCccchhhhhC
Q 037249 31 IPRFIGSIRNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENFLWLSGLSFLEQLDLCYVNLSKASDWLLVAN 110 (420)
Q Consensus 31 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 110 (420)
.+..++.+++|++|++++|.+.+ +| .+..+++|++|++++|.+...+ +..+++|++|++++|.+...+ +.
T Consensus 34 ~~~~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~-----~~ 103 (457)
T 3bz5_A 34 DTISEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD-----VT 103 (457)
T ss_dssp SEEEHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC-----CT
T ss_pred cccChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCceee-----cC
Confidence 34467789999999999999985 45 6899999999999999987763 788999999999999988763 67
Q ss_pred CCCCCcEEEccCCCCCCCCchhhccCCCCCEEEccCCcCCCCCCCCCCCCChhhhhccccccccccCCCCcccccccccc
Q 037249 111 TLPSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSWLYRLTHFEQLSVADRPRRIPRSMASLC 190 (420)
Q Consensus 111 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 190 (420)
.+++|++|++++|++..++ +..+++|++|++++|.++. + .+..+++|+.|+++++...-...+..++
T Consensus 104 ~l~~L~~L~L~~N~l~~l~---~~~l~~L~~L~l~~N~l~~--------l--~l~~l~~L~~L~l~~n~~~~~~~~~~l~ 170 (457)
T 3bz5_A 104 PLTKLTYLNCDTNKLTKLD---VSQNPLLTYLNCARNTLTE--------I--DVSHNTQLTELDCHLNKKITKLDVTPQT 170 (457)
T ss_dssp TCTTCCEEECCSSCCSCCC---CTTCTTCCEEECTTSCCSC--------C--CCTTCTTCCEEECTTCSCCCCCCCTTCT
T ss_pred CCCcCCEEECCCCcCCeec---CCCCCcCCEEECCCCccce--------e--ccccCCcCCEEECCCCCcccccccccCC
Confidence 8999999999999998864 7889999999999999865 2 2667889999999998522222577788
Q ss_pred CCcEEeeccCcccceeEEEeecCcccccchhhhhcCCCCCEEECCCcccccCCccchhhccCCcEeecCCccccCccchh
Q 037249 191 NLRTIYLSGCVSKELEILVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNGTLFEI 270 (420)
Q Consensus 191 ~L~~L~l~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~ 270 (420)
+|+.|++++|.+.. . + +..+++|+.|++++|.+.+. .++.+++|++|++++|.+++ ++
T Consensus 171 ~L~~L~ls~n~l~~-------------l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip-- 228 (457)
T 3bz5_A 171 QLTTLDCSFNKITE-------------L-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID-- 228 (457)
T ss_dssp TCCEEECCSSCCCC-------------C-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--
T ss_pred cCCEEECCCCccce-------------e-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--
Confidence 88888888876532 1 1 33445555555555555543 24455555555555555553 22
Q ss_pred hhcccCccceEeecCCccceecCCCCCCccceeeecccce---eeccccCcccccccccccCCccEEEccCCccccCCcc
Q 037249 271 HFVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLGLRSF---YLDLFNNSFSGSISHFCYQNLMLLTLSNNKFTGNLPN 347 (420)
Q Consensus 271 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~---~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 347 (420)
+..+++|+.|++++|.+.......+ ..++.+.+..+ .+++++|.+.+.++...+++|++|++++|...+.+|.
T Consensus 229 -~~~l~~L~~L~l~~N~l~~~~~~~l---~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~ 304 (457)
T 3bz5_A 229 -VTPLTQLTYFDCSVNPLTELDVSTL---SKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDC 304 (457)
T ss_dssp -CTTCTTCSEEECCSSCCSCCCCTTC---TTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEEC
T ss_pred -ccccCCCCEEEeeCCcCCCcCHHHC---CCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceecc
Confidence 4455555555555555554332222 22222211111 5777888877777766678888999988875544332
Q ss_pred --------cccccccccEEeccCCccccccCccccccCCCceEeCCCcccccccchhhhhcCCCceEEEeecccccc
Q 037249 348 --------SLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVGENEFVGNISTWFGERFSRVVVLILRSNQFRG 416 (420)
Q Consensus 348 --------~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~~L~~L~l~~~~~~~ 416 (420)
.+.++++|+.|++++|.+++ + .++.+++|+.|++++|++++ ++.|..|++++|.++|
T Consensus 305 ~~~~L~~L~l~~~~~L~~L~L~~N~l~~-l--~l~~l~~L~~L~l~~N~l~~---------l~~L~~L~l~~n~l~g 369 (457)
T 3bz5_A 305 QAAGITELDLSQNPKLVYLYLNNTELTE-L--DVSHNTKLKSLSCVNAHIQD---------FSSVGKIPALNNNFEA 369 (457)
T ss_dssp TTCCCSCCCCTTCTTCCEEECTTCCCSC-C--CCTTCTTCSEEECCSSCCCB---------CTTGGGSSGGGTSEEE
T ss_pred CCCcceEechhhcccCCEEECCCCcccc-c--ccccCCcCcEEECCCCCCCC---------ccccccccccCCcEEe
Confidence 25667788888888888875 3 27788888888888888874 3455566677776655
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.9e-31 Score=262.04 Aligned_cols=318 Identities=19% Similarity=0.177 Sum_probs=220.0
Q ss_pred CCCCCcEEecccCCCCCCCchhhhhccccCceeecCCCcccCCCCCCCCCCCCccEEEeecccccccccccccCCCcccE
Q 037249 12 DLNHLSYLGLSFNDFQGVQIPRFIGSIRNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENFLWLSGLSFLEQ 91 (420)
Q Consensus 12 ~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 91 (420)
.+++++.++++++.+... .+..+..+++|++|++++|.+.+..+..|+.+++|++|++++|.+...++..++.+++|+.
T Consensus 49 ~l~~l~~l~l~~~~l~~l-p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKL-PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCEESEE-CTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeCCCCCCc-CHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 356778888888877632 3344677888888888888887666777888888888888888888777777788888888
Q ss_pred EEcccccCCCccchhhhhCCCCCCcEEEccCCCCCCCCchhhccCCCCCEEEccCCcCCCCCCCCCCCCChhhhhccccc
Q 037249 92 LDLCYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSWLYRLTHFE 171 (420)
Q Consensus 92 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~ 171 (420)
|++++|.+...+. ..+..+++|++|++++|.+..+++..+..+++|++|++++|.+.. + .+..+++|+
T Consensus 128 L~L~~n~l~~l~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--------~--~~~~l~~L~ 195 (597)
T 3oja_B 128 LVLERNDLSSLPR--GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH--------V--DLSLIPSLF 195 (597)
T ss_dssp EECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB--------C--CGGGCTTCS
T ss_pred EEeeCCCCCCCCH--HHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC--------c--Chhhhhhhh
Confidence 8888888776653 235678888888888888888777777888888888888887753 1 133445556
Q ss_pred cccccCCCCccccccccccCCcEEeeccCcccceeEEEeecCcccccchhhhhcCCCCCEEECCCcccccCCccchhhcc
Q 037249 172 QLSVADRPRRIPRSMASLCNLRTIYLSGCVSKELEILVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELS 251 (420)
Q Consensus 172 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 251 (420)
.|+++++.- ..+...++|+.|++++|.+ ....+. ..++|+.|++++|.+.+. ..+..++
T Consensus 196 ~L~l~~n~l---~~l~~~~~L~~L~ls~n~l-------------~~~~~~---~~~~L~~L~L~~n~l~~~--~~l~~l~ 254 (597)
T 3oja_B 196 HANVSYNLL---STLAIPIAVEELDASHNSI-------------NVVRGP---VNVELTILKLQHNNLTDT--AWLLNYP 254 (597)
T ss_dssp EEECCSSCC---SEEECCTTCSEEECCSSCC-------------CEEECS---CCSCCCEEECCSSCCCCC--GGGGGCT
T ss_pred hhhcccCcc---ccccCCchhheeeccCCcc-------------cccccc---cCCCCCEEECCCCCCCCC--hhhccCC
Confidence 665555431 1122233455555544443 221111 125677788887777753 5667777
Q ss_pred CCcEeecCCccccCccchhhhcccCccceEeecCCccceecCCCCCCccceeeecccceeeccccCcccccccccccCCc
Q 037249 252 KLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLGLRSFYLDLFNNSFSGSISHFCYQNL 331 (420)
Q Consensus 252 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~L 331 (420)
+|+.|++++|.+++..+. .+..+++|+.|++++|.+....... ..+++|
T Consensus 255 ~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~l~~~~------------------------------~~l~~L 303 (597)
T 3oja_B 255 GLVEVDLSYNELEKIMYH-PFVKMQRLERLYISNNRLVALNLYG------------------------------QPIPTL 303 (597)
T ss_dssp TCSEEECCSSCCCEEESG-GGTTCSSCCEEECTTSCCCEEECSS------------------------------SCCTTC
T ss_pred CCCEEECCCCccCCCCHH-HhcCccCCCEEECCCCCCCCCCccc------------------------------ccCCCC
Confidence 788888887777754444 6677777777777777665321100 124688
Q ss_pred cEEEccCCccccCCcccccccccccEEeccCCccccccCccccccCCCceEeCCCcccccccchhhh
Q 037249 332 MLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVGENEFVGNISTWFG 398 (420)
Q Consensus 332 ~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~ 398 (420)
++|++++|.++ .+|..+..+++|+.|++++|.+.+ .+ +..+++|+.|++++|++.+.....+.
T Consensus 304 ~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~-~~--~~~~~~L~~L~l~~N~~~~~~~~~~~ 366 (597)
T 3oja_B 304 KVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHTLKNLTLSHNDWDCNSLRALF 366 (597)
T ss_dssp CEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC--CCTTCCCSEEECCSSCEEHHHHHHHT
T ss_pred cEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCC-cC--hhhcCCCCEEEeeCCCCCChhHHHHH
Confidence 88999998888 677777888889999999888873 33 66778888899998888766554443
No 38
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.5e-31 Score=253.20 Aligned_cols=347 Identities=22% Similarity=0.218 Sum_probs=242.4
Q ss_pred CccCCCCCCcEEecccCCCCCCCchhhhhccccCceeecCCCcccCCCCCCCCCCCCc-------------cEEEeeccc
Q 037249 8 PSLLDLNHLSYLGLSFNDFQGVQIPRFIGSIRNLRYLNLSDTQFVGMIPPPLGNLSNL-------------QSLDLSLNY 74 (420)
Q Consensus 8 ~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L-------------~~L~l~~~~ 74 (420)
++-...++|++|++++|.+. .+|..++++++|++|++++|.+.+.+|..++++.+| ++|+++++.
T Consensus 5 p~~~~~~~L~~L~l~~n~l~--~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~ 82 (454)
T 1jl5_A 5 PRNVSNTFLQEPLRHSSNLT--EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG 82 (454)
T ss_dssp -------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC
T ss_pred ccccccccchhhhcccCchh--hCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc
Confidence 34445689999999999994 589999999999999999999998999999998875 999999998
Q ss_pred ccccccccccCCCcccEEEcccccCCCccchhhhhCCCCCCcEEEccCCCCCCCCchhhccCCCCCEEEccCCcCCCCCC
Q 037249 75 LYVENFLWLSGLSFLEQLDLCYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSLI 154 (420)
Q Consensus 75 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 154 (420)
+...+. -.++|+.|++++|.+...+. ..++|++|++++|++..++.. .++|++|++++|.++.
T Consensus 83 l~~lp~----~~~~L~~L~l~~n~l~~lp~------~~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n~l~~--- 145 (454)
T 1jl5_A 83 LSSLPE----LPPHLESLVASCNSLTELPE------LPQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQLEK--- 145 (454)
T ss_dssp CSCCCS----CCTTCSEEECCSSCCSSCCC------CCTTCCEEECCSSCCSCCCSC----CTTCCEEECCSSCCSS---
T ss_pred cccCCC----CcCCCCEEEccCCcCCcccc------ccCCCcEEECCCCccCcccCC----CCCCCEEECcCCCCCC---
Confidence 766443 23789999999998887653 247899999999988876531 2789999999998864
Q ss_pred CCCCCCChhhhhccccccccccCCC-CccccccccccCCcEEeeccCcc---------cceeEEEeecCcccccchhhhh
Q 037249 155 PGWGPIPSWLYRLTHFEQLSVADRP-RRIPRSMASLCNLRTIYLSGCVS---------KELEILVLQSSSISGHLTEQIG 224 (420)
Q Consensus 155 ~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~~~~~---------~~l~~L~l~~~~~~~~~~~~l~ 224 (420)
++ .+..+++|+.|+++++. ..+|..+ ++|++|++++|.+ +.++.|++++|.+++. +.
T Consensus 146 -----lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l-~~--- 212 (454)
T 1jl5_A 146 -----LP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKL-PD--- 212 (454)
T ss_dssp -----CC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSC-CC---
T ss_pred -----Cc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcC-CC---
Confidence 44 47788999999999987 5555543 4888999988865 5677788888887752 22
Q ss_pred cCCCCCEEECCCcccccCCccchhhccCCcEeecCCccccCccchhhhcccCccceEeecCCccceecCCCCCCccceee
Q 037249 225 HFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQ 304 (420)
Q Consensus 225 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~ 304 (420)
..++|+.|++++|.+... | .++.+++|++|++++|.+++ ++. ..++|+.|++++|.+..... . ...++
T Consensus 213 ~~~~L~~L~l~~n~l~~l-p-~~~~l~~L~~L~l~~N~l~~-l~~----~~~~L~~L~l~~N~l~~l~~-~---~~~L~- 280 (454)
T 1jl5_A 213 LPLSLESIVAGNNILEEL-P-ELQNLPFLTTIYADNNLLKT-LPD----LPPSLEALNVRDNYLTDLPE-L---PQSLT- 280 (454)
T ss_dssp CCTTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSS-CCS----CCTTCCEEECCSSCCSCCCC-C---CTTCC-
T ss_pred CcCcccEEECcCCcCCcc-c-ccCCCCCCCEEECCCCcCCc-ccc----cccccCEEECCCCcccccCc-c---cCcCC-
Confidence 125788888888888744 4 47778888888888888773 332 24788888888888765322 1 12233
Q ss_pred ecccceeeccccCcccccccccccCCccEEEccCCccccCCccccccc-ccccEEeccCCccccccCccccccCCCceEe
Q 037249 305 LGLRSFYLDLFNNSFSGSISHFCYQNLMLLTLSNNKFTGNLPNSLGSL-TSLVSLHLHKNIFSGTIPISLKNCTALMILD 383 (420)
Q Consensus 305 l~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 383 (420)
.+++++|.+.+.... .++|++|++++|++++ ++ .+ ++|++|++++|.+. .+|.. +++|++|+
T Consensus 281 ------~L~ls~N~l~~l~~~--~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~ 343 (454)
T 1jl5_A 281 ------FLDVSENIFSGLSEL--PPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLI-ELPAL---PPRLERLI 343 (454)
T ss_dssp ------EEECCSSCCSEESCC--CTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCS-CCCCC---CTTCCEEE
T ss_pred ------EEECcCCccCcccCc--CCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCccc-ccccc---CCcCCEEE
Confidence 677888887774322 2689999999998874 22 23 58999999999998 46654 58999999
Q ss_pred CCCcccccccchhhhhcCCCceEEEeecccccc--CCCC
Q 037249 384 VGENEFVGNISTWFGERFSRVVVLILRSNQFRG--LLPT 420 (420)
Q Consensus 384 l~~n~~~~~~~~~l~~~~~~L~~L~l~~~~~~~--~~~~ 420 (420)
+++|.++ .+|. .+++|++|++++|++++ .+|.
T Consensus 344 L~~N~l~-~lp~----~l~~L~~L~L~~N~l~~l~~ip~ 377 (454)
T 1jl5_A 344 ASFNHLA-EVPE----LPQNLKQLHVEYNPLREFPDIPE 377 (454)
T ss_dssp CCSSCCS-CCCC----CCTTCCEEECCSSCCSSCCCCCT
T ss_pred CCCCccc-cccc----hhhhccEEECCCCCCCcCCCChH
Confidence 9999998 4565 37899999999999999 7774
No 39
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.98 E-value=2.2e-34 Score=275.00 Aligned_cols=384 Identities=21% Similarity=0.205 Sum_probs=261.1
Q ss_pred CCCCcEEecccCCCCCCCchhhhhccccCceeecCCCcccCC----CCCCCCCCCCccEEEeecccccccccccc-cCCC
Q 037249 13 LNHLSYLGLSFNDFQGVQIPRFIGSIRNLRYLNLSDTQFVGM----IPPPLGNLSNLQSLDLSLNYLYVENFLWL-SGLS 87 (420)
Q Consensus 13 ~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~l~ 87 (420)
.++|++|+++++.+++......+..+++|++|++++|.+... ++..+..+++|++|++++|.+.......+ ..++
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 357899999999988665555578899999999999998742 45667788999999999999876555443 3344
Q ss_pred ----cccEEEcccccCCCcc--chhhhhCCCCCCcEEEccCCCCCCCCchhhc-----cCCCCCEEEccCCcCCCCCCCC
Q 037249 88 ----FLEQLDLCYVNLSKAS--DWLLVANTLPSLVELRLSNCQLHHLPPLTIS-----NFSSLTVLDLSFSQFDNSLIPG 156 (420)
Q Consensus 88 ----~L~~L~l~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~~~~~ 156 (420)
+|++|++++|.+.... .+...+..+++|++|++++|.+.+.....+. ..++|++|++++|.++....
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~-- 159 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC-- 159 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH--
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH--
Confidence 7999999999887642 3455778899999999999988654443332 35689999999998764211
Q ss_pred CCCCChhhhhccccccccccCCC--Cccccccc-----cccCCcEEeeccCcccceeEEEeecCcccccchhhhhcCCCC
Q 037249 157 WGPIPSWLYRLTHFEQLSVADRP--RRIPRSMA-----SLCNLRTIYLSGCVSKELEILVLQSSSISGHLTEQIGHFKNL 229 (420)
Q Consensus 157 ~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~-----~~~~L~~L~l~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L 229 (420)
..++..+..+++|+.|+++++. ...+..+. ..++|++|++++|.+.... ...++..+..+++|
T Consensus 160 -~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~---------~~~l~~~l~~~~~L 229 (461)
T 1z7x_W 160 -EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDN---------CRDLCGIVASKASL 229 (461)
T ss_dssp -HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTH---------HHHHHHHHHHCTTC
T ss_pred -HHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHH---------HHHHHHHHHhCCCc
Confidence 1234556677888888888876 11112221 2347777777766442100 00245666777888
Q ss_pred CEEECCCcccccCCcc-----chhhccCCcEeecCCccccCc----cchhhhcccCccceEeecCCccceecCCCCC---
Q 037249 230 DTLDLGNNSIVGLVPL-----SLNELSKLRILHLPDNKLNGT----LFEIHFVNLTKLSVSSVNENNLTLKVNHDWV--- 297 (420)
Q Consensus 230 ~~L~l~~~~~~~~~~~-----~~~~~~~L~~L~l~~~~l~~~----~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~--- 297 (420)
++|++++|.+.+.... .+..+++|++|++++|.+++. ++. .+..+++|+.|++++|.+.......+.
T Consensus 230 ~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 308 (461)
T 1z7x_W 230 RELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR-VLRAKESLKELSLAGNELGDEGARLLCETL 308 (461)
T ss_dssp CEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH-HHHHCTTCCEEECTTCCCHHHHHHHHHHHH
T ss_pred cEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHH-HHhhCCCcceEECCCCCCchHHHHHHHHHh
Confidence 8888888877654221 122467888888888877643 222 455678888888888876543221111
Q ss_pred --CccceeeecccceeeccccCcccccc----ccc--ccCCccEEEccCCccccCCcccccc-----cccccEEeccCCc
Q 037249 298 --PPFQLVQLGLRSFYLDLFNNSFSGSI----SHF--CYQNLMLLTLSNNKFTGNLPNSLGS-----LTSLVSLHLHKNI 364 (420)
Q Consensus 298 --~~~~~~~l~~~~~~l~l~~~~~~~~~----~~~--~~~~L~~L~l~~~~l~~~~~~~~~~-----~~~L~~L~l~~n~ 364 (420)
...+++ .+++++|.+++.. +.. .+++|++|++++|++++..+..+.. .++|++|++++|.
T Consensus 309 ~~~~~~L~-------~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 381 (461)
T 1z7x_W 309 LEPGCQLE-------SLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD 381 (461)
T ss_dssp TSTTCCCC-------EEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred ccCCccce-------eeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC
Confidence 112333 5566666665542 111 3478999999999887554444432 6789999999998
Q ss_pred ccc----ccCccccccCCCceEeCCCcccccccchhhhhcC----CCceEEEeecccccc
Q 037249 365 FSG----TIPISLKNCTALMILDVGENEFVGNISTWFGERF----SRVVVLILRSNQFRG 416 (420)
Q Consensus 365 ~~~----~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~----~~L~~L~l~~~~~~~ 416 (420)
+++ .++..+..+++|++|++++|++++.....+.+.+ ..|+.|.+.++.+..
T Consensus 382 i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 382 VSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp CCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred CChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence 885 6677788889999999999998877666665444 358888888876643
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.98 E-value=4.3e-31 Score=246.46 Aligned_cols=310 Identities=19% Similarity=0.191 Sum_probs=241.5
Q ss_pred ccccCceeecCCCcccCCCCCCCCCCCCccEEEeecccccccccccccCCCcccEEEcccccCCCccchhhhhCCCCCCc
Q 037249 37 SIRNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENFLWLSGLSFLEQLDLCYVNLSKASDWLLVANTLPSLV 116 (420)
Q Consensus 37 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 116 (420)
.++++++++++++.+....+..+..+++|++|++++|.+.......+..+++|++|++++|.+...+. ..+..+++|+
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP--HVFQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCC
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCH--HHhcCCCCCC
Confidence 46889999999998874444446888999999999999888877788899999999999998877642 3567889999
Q ss_pred EEEccCCCCCCCCchhhccCCCCCEEEccCCcCCCCCCCCCCCCChhhhhccccccccccCCC-CccccccccccCCcEE
Q 037249 117 ELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSWLYRLTHFEQLSVADRP-RRIPRSMASLCNLRTI 195 (420)
Q Consensus 117 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L 195 (420)
+|++++|++..++...+..+++|++|++++|.+.. ..+..+..+++|+.|+++++. ... .+..+++|+.+
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~-------~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~l~~L~~L 191 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER-------IEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHA 191 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB-------CCTTTTSSCTTCCEEECCSSCCSBC--CGGGCTTCSEE
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCc-------cChhhccCCCCCCEEECCCCcCCcc--cccccccccee
Confidence 99999999988887777889999999999998753 133456677888888888876 332 35566777777
Q ss_pred eeccCcccceeEEEeecCcccccchhhhhcCCCCCEEECCCcccccCCccchhhccCCcEeecCCccccCccchhhhccc
Q 037249 196 YLSGCVSKELEILVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNGTLFEIHFVNL 275 (420)
Q Consensus 196 ~l~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 275 (420)
+++++.+..+ ...+.|+.|++++|.+... +.. ..++|+.|++++|.+++. ..+..+
T Consensus 192 ~l~~n~l~~~------------------~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~---~~l~~l 247 (390)
T 3o6n_A 192 NVSYNLLSTL------------------AIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT---AWLLNY 247 (390)
T ss_dssp ECCSSCCSEE------------------ECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC---GGGGGC
T ss_pred eccccccccc------------------CCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc---HHHcCC
Confidence 7777654322 1235788999999888765 222 247899999999988743 257788
Q ss_pred CccceEeecCCccceecCCCCCCccceeeecccceeeccccCcccccccccccCCccEEEccCCccccCCcccccccccc
Q 037249 276 TKLSVSSVNENNLTLKVNHDWVPPFQLVQLGLRSFYLDLFNNSFSGSISHFCYQNLMLLTLSNNKFTGNLPNSLGSLTSL 355 (420)
Q Consensus 276 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L 355 (420)
++|+.|++++|.+....+..+. .+++|++|++++|+++ .++..+..+++|
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~-----------------------------~l~~L~~L~L~~n~l~-~~~~~~~~l~~L 297 (390)
T 3o6n_A 248 PGLVEVDLSYNELEKIMYHPFV-----------------------------KMQRLERLYISNNRLV-ALNLYGQPIPTL 297 (390)
T ss_dssp TTCSEEECCSSCCCEEESGGGT-----------------------------TCSSCCEEECCSSCCC-EEECSSSCCTTC
T ss_pred CCccEEECCCCcCCCcChhHcc-----------------------------ccccCCEEECCCCcCc-ccCcccCCCCCC
Confidence 8898888888877644322221 2478999999999998 466677889999
Q ss_pred cEEeccCCccccccCccccccCCCceEeCCCcccccccchhhhhcCCCceEEEeecccccc
Q 037249 356 VSLHLHKNIFSGTIPISLKNCTALMILDVGENEFVGNISTWFGERFSRVVVLILRSNQFRG 416 (420)
Q Consensus 356 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~~L~~L~l~~~~~~~ 416 (420)
++|++++|++. .+|..+..+++|++|++++|++++.. +. .+++|++|++++|+++.
T Consensus 298 ~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~---~~-~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 298 KVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LS-THHTLKNLTLSHNDWDC 353 (390)
T ss_dssp CEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CC-TTCCCSEEECCSSCEEH
T ss_pred CEEECCCCcce-ecCccccccCcCCEEECCCCccceeC---ch-hhccCCEEEcCCCCccc
Confidence 99999999998 77778899999999999999997553 33 48999999999999864
No 41
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=2.3e-29 Score=229.44 Aligned_cols=300 Identities=20% Similarity=0.220 Sum_probs=185.5
Q ss_pred CCCCCccCCC------CCCcEEecccCCCCCCCchhhhhccccCceeecCCCcccCCCCCCCCCCCCccEEEeecccccc
Q 037249 4 GKVNPSLLDL------NHLSYLGLSFNDFQGVQIPRFIGSIRNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYV 77 (420)
Q Consensus 4 ~~l~~~~~~~------~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 77 (420)
+++|..+... .+++.++++++.+. .+|..+ .+++++|++++|.+....+..|.++++|++|++++|.+..
T Consensus 17 ~~lp~~~~~~cp~~c~c~l~~l~~~~~~l~--~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~ 92 (332)
T 2ft3_A 17 DSLPPTYSAMCPFGCHCHLRVVQCSDLGLK--AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK 92 (332)
T ss_dssp --------CCCCSSCEEETTEEECCSSCCS--SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred ccCCCcccCCCCCCCcccCCEEECCCCCcc--ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCc
Confidence 4566654433 26899999998877 455544 3789999999999887777789999999999999999888
Q ss_pred cccccccCCCcccEEEcccccCCCccchhhhhCCCCCCcEEEccCCCCCCCCchhhccCCCCCEEEccCCcCCCCCCCCC
Q 037249 78 ENFLWLSGLSFLEQLDLCYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSLIPGW 157 (420)
Q Consensus 78 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 157 (420)
..+..+.++++|++|++++|.+...+. .+ .++|++|++++|++..+++..+..+++|++|++++|.++...
T Consensus 93 ~~~~~~~~l~~L~~L~L~~n~l~~l~~---~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~---- 163 (332)
T 2ft3_A 93 IHEKAFSPLRKLQKLYISKNHLVEIPP---NL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSG---- 163 (332)
T ss_dssp ECGGGSTTCTTCCEEECCSSCCCSCCS---SC--CTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGG----
T ss_pred cCHhHhhCcCCCCEEECCCCcCCccCc---cc--cccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCC----
Confidence 878888999999999999998887654 12 378999999999999888877889999999999998875310
Q ss_pred CCCChhhhhccccccccccCCC-CccccccccccCCcEEeeccCcccceeEEEeecCcccccchhhhhcCCCCCEEECCC
Q 037249 158 GPIPSWLYRLTHFEQLSVADRP-RRIPRSMASLCNLRTIYLSGCVSKELEILVLQSSSISGHLTEQIGHFKNLDTLDLGN 236 (420)
Q Consensus 158 ~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 236 (420)
..+..+..+ +|+.|+++++. ..+|..+. ++|+.|++++
T Consensus 164 -~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~---------------------------------------~~L~~L~l~~ 202 (332)
T 2ft3_A 164 -FEPGAFDGL-KLNYLRISEAKLTGIPKDLP---------------------------------------ETLNELHLDH 202 (332)
T ss_dssp -SCTTSSCSC-CCSCCBCCSSBCSSCCSSSC---------------------------------------SSCSCCBCCS
T ss_pred -CCcccccCC-ccCEEECcCCCCCccCcccc---------------------------------------CCCCEEECCC
Confidence 112222222 44444444443 22222211 3455555555
Q ss_pred cccccCCccchhhccCCcEeecCCccccCccchhhhcccCccceEeecCCccceecCCCCCCccceeeecccceeecccc
Q 037249 237 NSIVGLVPLSLNELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLGLRSFYLDLFN 316 (420)
Q Consensus 237 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~ 316 (420)
|.+.+..+..+..+++|++|++++|.+++..+ ..+..+++|+.|++++|.+..... .+
T Consensus 203 n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~lp~-~l-------------------- 260 (332)
T 2ft3_A 203 NKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN-GSLSFLPTLRELHLDNNKLSRVPA-GL-------------------- 260 (332)
T ss_dssp SCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCT-TGGGGCTTCCEEECCSSCCCBCCT-TG--------------------
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCcCCh-hHhhCCCCCCEEECCCCcCeecCh-hh--------------------
Confidence 55555444455555555555555555543222 244555555555555555442110 00
Q ss_pred CcccccccccccCCccEEEccCCccccCCcccccc------cccccEEeccCCccc--cccCccccccCCCceEeCCCcc
Q 037249 317 NSFSGSISHFCYQNLMLLTLSNNKFTGNLPNSLGS------LTSLVSLHLHKNIFS--GTIPISLKNCTALMILDVGENE 388 (420)
Q Consensus 317 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~------~~~L~~L~l~~n~~~--~~~~~~l~~l~~L~~L~l~~n~ 388 (420)
..+++|++|++++|++++..+..|.. .++|+.|++++|++. ...|..+..+++|+.+++++|+
T Consensus 261 ---------~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 261 ---------PDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp ---------GGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ---------hcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 01245666666666666444444432 356677777777665 4555666777777777777764
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=2e-29 Score=247.71 Aligned_cols=308 Identities=19% Similarity=0.167 Sum_probs=209.0
Q ss_pred cccCceeecCCCcccCCCCCCCCCCCCccEEEeecccccccccccccCCCcccEEEcccccCCCccchhhhhCCCCCCcE
Q 037249 38 IRNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENFLWLSGLSFLEQLDLCYVNLSKASDWLLVANTLPSLVE 117 (420)
Q Consensus 38 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 117 (420)
+.+++.++++++.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+...+. ..++.+++|++
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~ 127 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP--HVFQNVPLLTV 127 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCH--HHHcCCCCCCE
Confidence 3455555555555543333334455555555555555555444445555555555555555544321 13344555555
Q ss_pred EEccCCCCCCCCchhhccCCCCCEEEccCCcCCCCCCCCCCCCChhhhhccccccccccCCCCccccccccccCCcEEee
Q 037249 118 LRLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSWLYRLTHFEQLSVADRPRRIPRSMASLCNLRTIYL 197 (420)
Q Consensus 118 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l 197 (420)
|++++|.+..+++..+..+++|++|++++|.+. ...+..+..+++|+.|++
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~-----------------------------~~~~~~~~~l~~L~~L~L 178 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-----------------------------RIEDDTFQATTSLQNLQL 178 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-----------------------------BCCTTTTTTCTTCCEEEC
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCC-----------------------------CCChhhhhcCCcCcEEEC
Confidence 555555555554444455555555555555442 233456778888888888
Q ss_pred ccCcccceeEEEeecCcccccchhhhhcCCCCCEEECCCcccccCCccchhhccCCcEeecCCccccCccchhhhcccCc
Q 037249 198 SGCVSKELEILVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNGTLFEIHFVNLTK 277 (420)
Q Consensus 198 ~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~ 277 (420)
++|.+.. . .+..+++|+.+++++|.+... ...++|+.|++++|.++ .++. ...++
T Consensus 179 ~~N~l~~-------------~---~~~~l~~L~~L~l~~n~l~~l-----~~~~~L~~L~ls~n~l~-~~~~---~~~~~ 233 (597)
T 3oja_B 179 SSNRLTH-------------V---DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSIN-VVRG---PVNVE 233 (597)
T ss_dssp TTSCCSB-------------C---CGGGCTTCSEEECCSSCCSEE-----ECCTTCSEEECCSSCCC-EEEC---SCCSC
T ss_pred cCCCCCC-------------c---ChhhhhhhhhhhcccCccccc-----cCCchhheeeccCCccc-cccc---ccCCC
Confidence 8876532 1 245678999999999988754 33468999999999987 3333 12378
Q ss_pred cceEeecCCccceecCCCCCCccceeeecccceeeccccCccccccccc--ccCCccEEEccCCccccCCcccccccccc
Q 037249 278 LSVSSVNENNLTLKVNHDWVPPFQLVQLGLRSFYLDLFNNSFSGSISHF--CYQNLMLLTLSNNKFTGNLPNSLGSLTSL 355 (420)
Q Consensus 278 L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~L 355 (420)
|+.|++++|.+... ..+.....++ .+++++|.+.+..+.. .+++|++|++++|.+++ ++..+..+++|
T Consensus 234 L~~L~L~~n~l~~~--~~l~~l~~L~-------~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L 303 (597)
T 3oja_B 234 LTILKLQHNNLTDT--AWLLNYPGLV-------EVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTL 303 (597)
T ss_dssp CCEEECCSSCCCCC--GGGGGCTTCS-------EEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTC
T ss_pred CCEEECCCCCCCCC--hhhccCCCCC-------EEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCC
Confidence 99999999988753 2233333333 6888899998886654 67999999999999984 66677889999
Q ss_pred cEEeccCCccccccCccccccCCCceEeCCCcccccccchhhhhcCCCceEEEeecccccc
Q 037249 356 VSLHLHKNIFSGTIPISLKNCTALMILDVGENEFVGNISTWFGERFSRVVVLILRSNQFRG 416 (420)
Q Consensus 356 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~~L~~L~l~~~~~~~ 416 (420)
+.|++++|.+. .+|..+..+++|++|++++|.+++.. +. .+++|++|++++|++++
T Consensus 304 ~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~-~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 304 KVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LS-THHTLKNLTLSHNDWDC 359 (597)
T ss_dssp CEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CC-TTCCCSEEECCSSCEEH
T ss_pred cEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hh-hcCCCCEEEeeCCCCCC
Confidence 99999999999 78888899999999999999997553 33 48899999999999875
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.8e-28 Score=223.36 Aligned_cols=291 Identities=19% Similarity=0.194 Sum_probs=182.7
Q ss_pred CCcEEecccCCCCCCCchhhhhccccCceeecCCCcccCCCCCCCCCCCCccEEEeecccccccccccccCCCcccEEEc
Q 037249 15 HLSYLGLSFNDFQGVQIPRFIGSIRNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENFLWLSGLSFLEQLDL 94 (420)
Q Consensus 15 ~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 94 (420)
++++++++++.+. .+|..+. +++++|++++|.++...+..|.++++|++|++++|.+....+..+..+++|++|++
T Consensus 32 ~l~~l~~~~~~l~--~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLE--KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCC--SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCcc--ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 7888888888776 4554443 67888999998888666667888889999999888888777777888888999999
Q ss_pred ccccCCCccchhhhhCCCCCCcEEEccCCCCCCCCchhhccCCCCCEEEccCCcCCCCCCCCCCCCChhhhhcccccccc
Q 037249 95 CYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSWLYRLTHFEQLS 174 (420)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 174 (420)
++|.+...+. . ..++|++|++++|.+..+++..+..+++|++|++++|.+...
T Consensus 108 s~n~l~~l~~---~--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------------- 160 (330)
T 1xku_A 108 SKNQLKELPE---K--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS---------------------- 160 (330)
T ss_dssp CSSCCSBCCS---S--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGG----------------------
T ss_pred CCCcCCccCh---h--hcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCcc----------------------
Confidence 8888876653 1 237888888888888888877788888888888888876421
Q ss_pred ccCCCCccccccccccCCcEEeeccCcccceeEEEeecCcccccchhhhhcCCCCCEEECCCcccccCCccchhhccCCc
Q 037249 175 VADRPRRIPRSMASLCNLRTIYLSGCVSKELEILVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLR 254 (420)
Q Consensus 175 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 254 (420)
...+..+..+++|+.|++++|.+..+ +..+ .++|+.|++++|.+.+..+..+..+++|+
T Consensus 161 -----~~~~~~~~~l~~L~~L~l~~n~l~~l--------------~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 219 (330)
T 1xku_A 161 -----GIENGAFQGMKKLSYIRIADTNITTI--------------PQGL--PPSLTELHLDGNKITKVDAASLKGLNNLA 219 (330)
T ss_dssp -----GBCTTGGGGCTTCCEEECCSSCCCSC--------------CSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCC
T ss_pred -----CcChhhccCCCCcCEEECCCCccccC--------------Cccc--cccCCEEECCCCcCCccCHHHhcCCCCCC
Confidence 01233444555555555555443211 1111 14555566666555555455555555666
Q ss_pred EeecCCccccCccchhhhcccCccceEeecCCccceecCCCCCCccceeeecccceeeccccCcccccccccccCCccEE
Q 037249 255 ILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLGLRSFYLDLFNNSFSGSISHFCYQNLMLL 334 (420)
Q Consensus 255 ~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~L~~L 334 (420)
+|++++|.+++..+ ..+..+++|+.|++++|.+..... .+. .+++|++|
T Consensus 220 ~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~lp~-~l~-----------------------------~l~~L~~L 268 (330)
T 1xku_A 220 KLGLSFNSISAVDN-GSLANTPHLRELHLNNNKLVKVPG-GLA-----------------------------DHKYIQVV 268 (330)
T ss_dssp EEECCSSCCCEECT-TTGGGSTTCCEEECCSSCCSSCCT-TTT-----------------------------TCSSCCEE
T ss_pred EEECCCCcCceeCh-hhccCCCCCCEEECCCCcCccCCh-hhc-----------------------------cCCCcCEE
Confidence 66666665553222 245555566666666655542111 010 12456666
Q ss_pred EccCCccccCCccccc------ccccccEEeccCCcccc--ccCccccccCCCceEeCCCcc
Q 037249 335 TLSNNKFTGNLPNSLG------SLTSLVSLHLHKNIFSG--TIPISLKNCTALMILDVGENE 388 (420)
Q Consensus 335 ~l~~~~l~~~~~~~~~------~~~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~ 388 (420)
++++|++++..+..|. ..++++.|++++|++.. ..|..+..+++++.+++++|+
T Consensus 269 ~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 269 YLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp ECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 6666666644444442 23667777777777652 445566777777777777763
No 44
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=1.1e-31 Score=256.43 Aligned_cols=371 Identities=17% Similarity=0.108 Sum_probs=243.6
Q ss_pred cCCCCCCcEEecccCCCCCC---CchhhhhccccCceeecCCCcccCCCCCCC-CCCC----CccEEEeecccccccc--
Q 037249 10 LLDLNHLSYLGLSFNDFQGV---QIPRFIGSIRNLRYLNLSDTQFVGMIPPPL-GNLS----NLQSLDLSLNYLYVEN-- 79 (420)
Q Consensus 10 ~~~~~~L~~L~l~~~~i~~~---~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l-~~l~----~L~~L~l~~~~~~~~~-- 79 (420)
+..+++|++|++++|.+.+. .++..+..+++|++|++++|.+....+..+ ..++ +|++|++++|.+...+
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~ 103 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG 103 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHH
Confidence 66788999999999988743 246677788999999999998865322222 2233 7999999999987544
Q ss_pred --cccccCCCcccEEEcccccCCCcc--chhhh-hCCCCCCcEEEccCCCCCCCC----chhhccCCCCCEEEccCCcCC
Q 037249 80 --FLWLSGLSFLEQLDLCYVNLSKAS--DWLLV-ANTLPSLVELRLSNCQLHHLP----PLTISNFSSLTVLDLSFSQFD 150 (420)
Q Consensus 80 --~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~-~~~~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~ 150 (420)
...+..+++|++|++++|.+.... .+... ....++|++|++++|++.... +..+..+++|++|++++|.+.
T Consensus 104 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 183 (461)
T 1z7x_W 104 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 183 (461)
T ss_dssp HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcc
Confidence 556788999999999999876532 11112 233568999999999888654 334567899999999999875
Q ss_pred CCCCCCCCCCChhhh-hccccccccccCCC-C-----ccccccccccCCcEEeeccCcc----------------cceeE
Q 037249 151 NSLIPGWGPIPSWLY-RLTHFEQLSVADRP-R-----RIPRSMASLCNLRTIYLSGCVS----------------KELEI 207 (420)
Q Consensus 151 ~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~-~-----~~~~~~~~~~~L~~L~l~~~~~----------------~~l~~ 207 (420)
+... ..+...+. ..++|+.|+++++. . .++..+..+++|++|++++|.+ +.++.
T Consensus 184 ~~~~---~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~ 260 (461)
T 1z7x_W 184 EAGV---RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRT 260 (461)
T ss_dssp HHHH---HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCE
T ss_pred hHHH---HHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceE
Confidence 3110 00111111 24589999999987 2 2466778889999999998864 35666
Q ss_pred EEeecCccccc----chhhhhcCCCCCEEECCCcccccCCccchhhc-----cCCcEeecCCccccCccch---hhhccc
Q 037249 208 LVLQSSSISGH----LTEQIGHFKNLDTLDLGNNSIVGLVPLSLNEL-----SKLRILHLPDNKLNGTLFE---IHFVNL 275 (420)
Q Consensus 208 L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~l~~~~~~---~~~~~~ 275 (420)
|++++|.+++. ++..+..+++|++|++++|.+.+..+..+... ++|++|++++|.+++.... ..+..+
T Consensus 261 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 340 (461)
T 1z7x_W 261 LWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQN 340 (461)
T ss_dssp EECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHC
T ss_pred EECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhC
Confidence 66666666543 34445556666666666666654333333221 4666666666666543211 134455
Q ss_pred CccceEeecCCccceecCCCCCCccceeeecccceeeccccCcccccccccccCCccEEEccCCcccc----CCcccccc
Q 037249 276 TKLSVSSVNENNLTLKVNHDWVPPFQLVQLGLRSFYLDLFNNSFSGSISHFCYQNLMLLTLSNNKFTG----NLPNSLGS 351 (420)
Q Consensus 276 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~----~~~~~~~~ 351 (420)
++|+.|++++|.+.......+. .... ...++|++|++++|++++ .++..+..
T Consensus 341 ~~L~~L~Ls~n~i~~~~~~~l~-----------------------~~l~-~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 396 (461)
T 1z7x_W 341 RFLLELQISNNRLEDAGVRELC-----------------------QGLG-QPGSVLRVLWLADCDVSDSSCSSLAATLLA 396 (461)
T ss_dssp SSCCEEECCSSBCHHHHHHHHH-----------------------HHHT-STTCCCCEEECTTSCCCHHHHHHHHHHHHH
T ss_pred CCccEEEccCCccccccHHHHH-----------------------HHHc-CCCCceEEEECCCCCCChhhHHHHHHHHHh
Confidence 6666666666654422110000 0000 014689999999999985 67788889
Q ss_pred cccccEEeccCCccccccCcccc-----ccCCCceEeCCCcccccccc---hhhhhcCCCceEE
Q 037249 352 LTSLVSLHLHKNIFSGTIPISLK-----NCTALMILDVGENEFVGNIS---TWFGERFSRVVVL 407 (420)
Q Consensus 352 ~~~L~~L~l~~n~~~~~~~~~l~-----~l~~L~~L~l~~n~~~~~~~---~~l~~~~~~L~~L 407 (420)
+++|++|++++|++.+.....+. ...+|+.|++.++.+..... +.+.+..|+|+.+
T Consensus 397 ~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~l~~~~p~l~i~ 460 (461)
T 1z7x_W 397 NHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 460 (461)
T ss_dssp CCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEEE
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHHHHHHhccCCCcEee
Confidence 99999999999999855433332 13468888887776654443 3455557888765
No 45
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=1.2e-31 Score=264.24 Aligned_cols=397 Identities=13% Similarity=0.057 Sum_probs=231.3
Q ss_pred ccCCCCCCcEEecccCCCC-----------CC---CchhhhhccccCceeecCCCcccCCCCCCCCC-CCC-ccEEEeec
Q 037249 9 SLLDLNHLSYLGLSFNDFQ-----------GV---QIPRFIGSIRNLRYLNLSDTQFVGMIPPPLGN-LSN-LQSLDLSL 72 (420)
Q Consensus 9 ~~~~~~~L~~L~l~~~~i~-----------~~---~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~-l~~-L~~L~l~~ 72 (420)
.+.++++|++|+++++..- +. .+......+++|++|++++|.+++..+..+.. +++ |++|++++
T Consensus 68 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~ 147 (592)
T 3ogk_B 68 LSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDK 147 (592)
T ss_dssp HHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEES
T ss_pred HHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcC
Confidence 3456777888888764310 00 01222336788888888888765443333433 334 88888877
Q ss_pred cc-ccccccc-cccCCCcccEEEcccccCCCccc--hhhhhCCCCCCcEEEccCCCCCCCCc----hhhccCCCCCEEEc
Q 037249 73 NY-LYVENFL-WLSGLSFLEQLDLCYVNLSKASD--WLLVANTLPSLVELRLSNCQLHHLPP----LTISNFSSLTVLDL 144 (420)
Q Consensus 73 ~~-~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l 144 (420)
|. +...... ....+++|++|++++|.+..... +......+++|++|+++++.+..+.. ..+..+++|++|++
T Consensus 148 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L 227 (592)
T 3ogk_B 148 CSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKV 227 (592)
T ss_dssp CEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEEC
T ss_pred CCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEec
Confidence 75 2222221 22467788888888876644321 22344567788888888877763332 23356788888888
Q ss_pred cCCcCCCCCCCCCCCCChhhhhccccccccccCCC-----CccccccccccCCcEEeeccCc----------ccceeEEE
Q 037249 145 SFSQFDNSLIPGWGPIPSWLYRLTHFEQLSVADRP-----RRIPRSMASLCNLRTIYLSGCV----------SKELEILV 209 (420)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-----~~~~~~~~~~~~L~~L~l~~~~----------~~~l~~L~ 209 (420)
+++.+.. ++..+..+++|+.|+++... ......+..+++|+.+.++++. .+.++.|+
T Consensus 228 ~~~~~~~--------l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~ 299 (592)
T 3ogk_B 228 GDFEILE--------LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLD 299 (592)
T ss_dssp SSCBGGG--------GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEE
T ss_pred cCccHHH--------HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEe
Confidence 8776643 56667777777777776433 1233455566667777666542 24667777
Q ss_pred eecCcccccch-hhhhcCCCCCEEECCCcccccC-CccchhhccCCcEeecCC-----------ccccCccchhhhcccC
Q 037249 210 LQSSSISGHLT-EQIGHFKNLDTLDLGNNSIVGL-VPLSLNELSKLRILHLPD-----------NKLNGTLFEIHFVNLT 276 (420)
Q Consensus 210 l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~-----------~~l~~~~~~~~~~~~~ 276 (420)
+++|.+++... ..+..+++|+.|+++ +.+.+. .+.....+++|++|++++ +.+++.........++
T Consensus 300 Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (592)
T 3ogk_B 300 LLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQ 378 (592)
T ss_dssp ETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCT
T ss_pred cCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCc
Confidence 77776554333 345677777777777 333322 223334567777777773 3444332222344577
Q ss_pred ccceEeecCCccceecCCCCCC-ccceeeecccceeeccccCcccccc-----cc--cccCCccEEEccCCc--cccCCc
Q 037249 277 KLSVSSVNENNLTLKVNHDWVP-PFQLVQLGLRSFYLDLFNNSFSGSI-----SH--FCYQNLMLLTLSNNK--FTGNLP 346 (420)
Q Consensus 277 ~L~~l~l~~~~~~~~~~~~~~~-~~~~~~l~~~~~~l~l~~~~~~~~~-----~~--~~~~~L~~L~l~~~~--l~~~~~ 346 (420)
+|+.|++..+.++......... +..++.+.+..+. ..+.+++.. +. ..+++|++|++++|. +++..+
T Consensus 379 ~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~---~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~ 455 (592)
T 3ogk_B 379 ELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLD---REERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL 455 (592)
T ss_dssp TCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECS---CCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH
T ss_pred cCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecC---CCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH
Confidence 7777777666555433222211 2334433222110 234444321 11 135778888887554 554444
Q ss_pred cccc-ccccccEEeccCCccccc-cCccccccCCCceEeCCCcccccccchhhhhcCCCceEEEeeccccccC
Q 037249 347 NSLG-SLTSLVSLHLHKNIFSGT-IPISLKNCTALMILDVGENEFVGNISTWFGERFSRVVVLILRSNQFRGL 417 (420)
Q Consensus 347 ~~~~-~~~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~ 417 (420)
..+. .+++|+.|++++|++++. .+..+..+++|++|++++|.+++.....+...+++|++|++++|++++.
T Consensus 456 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 456 SYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 4433 477788888888877642 3344567788888888888877666665555578888888888877654
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=1.3e-27 Score=217.81 Aligned_cols=292 Identities=22% Similarity=0.169 Sum_probs=205.5
Q ss_pred ccCceeecCCCcccCCCCCCCCCCCCccEEEeecccccccccccccCCCcccEEEcccccCCCccchhhhhCCCCCCcEE
Q 037249 39 RNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENFLWLSGLSFLEQLDLCYVNLSKASDWLLVANTLPSLVEL 118 (420)
Q Consensus 39 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 118 (420)
.+++.++++++.++ .+|..+ .+++++|++++|.+.......+.++++|++|++++|.+.... ...+..+++|++|
T Consensus 31 c~l~~l~~~~~~l~-~lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L 105 (330)
T 1xku_A 31 CHLRVVQCSDLGLE-KVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS--PGAFAPLVKLERL 105 (330)
T ss_dssp EETTEEECTTSCCC-SCCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBC--TTTTTTCTTCCEE
T ss_pred CCCeEEEecCCCcc-ccCccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeC--HHHhcCCCCCCEE
Confidence 36888888888876 566544 367888888888877776666777777777777777776552 1245667777777
Q ss_pred EccCCCCCCCCchhhccCCCCCEEEccCCcCCCCCCCCCCCCChhhhhccccccccccCCCCccccccccccCCcEEeec
Q 037249 119 RLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSWLYRLTHFEQLSVADRPRRIPRSMASLCNLRTIYLS 198 (420)
Q Consensus 119 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~ 198 (420)
++++|++..++... .++|++|++++|.+.. ..+..+..+++|+.|+++
T Consensus 106 ~Ls~n~l~~l~~~~---~~~L~~L~l~~n~l~~-----------------------------~~~~~~~~l~~L~~L~l~ 153 (330)
T 1xku_A 106 YLSKNQLKELPEKM---PKTLQELRVHENEITK-----------------------------VRKSVFNGLNQMIVVELG 153 (330)
T ss_dssp ECCSSCCSBCCSSC---CTTCCEEECCSSCCCB-----------------------------BCHHHHTTCTTCCEEECC
T ss_pred ECCCCcCCccChhh---cccccEEECCCCcccc-----------------------------cCHhHhcCCccccEEECC
Confidence 77777776555422 2567777777766532 122345666777777777
Q ss_pred cCcccceeEEEeecCcccccchhhhhcCCCCCEEECCCcccccCCccchhhccCCcEeecCCccccCccchhhhcccCcc
Q 037249 199 GCVSKELEILVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNGTLFEIHFVNLTKL 278 (420)
Q Consensus 199 ~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L 278 (420)
+|.+.. .+..+..+..+++|+.|++++|.+... |..+. ++|++|++++|.+++..+. .+..+++|
T Consensus 154 ~n~l~~-----------~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~~--~~L~~L~l~~n~l~~~~~~-~~~~l~~L 218 (330)
T 1xku_A 154 TNPLKS-----------SGIENGAFQGMKKLSYIRIADTNITTI-PQGLP--PSLTELHLDGNKITKVDAA-SLKGLNNL 218 (330)
T ss_dssp SSCCCG-----------GGBCTTGGGGCTTCCEEECCSSCCCSC-CSSCC--TTCSEEECTTSCCCEECTG-GGTTCTTC
T ss_pred CCcCCc-----------cCcChhhccCCCCcCEEECCCCccccC-Ccccc--ccCCEEECCCCcCCccCHH-HhcCCCCC
Confidence 665422 124456677888899999999888865 33332 7889999999888744333 67888888
Q ss_pred ceEeecCCccceecCCCCCCccceeeecccceeeccccCcccccccccccCCccEEEccCCccccCCcccccccccccEE
Q 037249 279 SVSSVNENNLTLKVNHDWVPPFQLVQLGLRSFYLDLFNNSFSGSISHFCYQNLMLLTLSNNKFTGNLPNSLGSLTSLVSL 358 (420)
Q Consensus 279 ~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L 358 (420)
+.|++++|.+....+..+. .+++|++|++++|+++ .+|..+..+++|++|
T Consensus 219 ~~L~Ls~n~l~~~~~~~~~-----------------------------~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L 268 (330)
T 1xku_A 219 AKLGLSFNSISAVDNGSLA-----------------------------NTPHLRELHLNNNKLV-KVPGGLADHKYIQVV 268 (330)
T ss_dssp CEEECCSSCCCEECTTTGG-----------------------------GSTTCCEEECCSSCCS-SCCTTTTTCSSCCEE
T ss_pred CEEECCCCcCceeChhhcc-----------------------------CCCCCCEEECCCCcCc-cCChhhccCCCcCEE
Confidence 8888888877643322111 2478999999999999 788889999999999
Q ss_pred eccCCccccccCccccc------cCCCceEeCCCccccc--ccchhhhhcCCCceEEEeeccc
Q 037249 359 HLHKNIFSGTIPISLKN------CTALMILDVGENEFVG--NISTWFGERFSRVVVLILRSNQ 413 (420)
Q Consensus 359 ~l~~n~~~~~~~~~l~~------l~~L~~L~l~~n~~~~--~~~~~l~~~~~~L~~L~l~~~~ 413 (420)
++++|++++..+..+.. .+.++.|++++|++.. ..|..+. ++++++.+++++|+
T Consensus 269 ~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~-~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 269 YLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFR-CVYVRAAVQLGNYK 330 (330)
T ss_dssp ECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGT-TCCCGGGEEC----
T ss_pred ECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccc-cccceeEEEecccC
Confidence 99999999666656543 4789999999998864 3444544 48999999999985
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=2.6e-27 Score=215.86 Aligned_cols=290 Identities=22% Similarity=0.241 Sum_probs=204.3
Q ss_pred cCceeecCCCcccCCCCCCCCCCCCccEEEeecccccccccccccCCCcccEEEcccccCCCccchhhhhCCCCCCcEEE
Q 037249 40 NLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENFLWLSGLSFLEQLDLCYVNLSKASDWLLVANTLPSLVELR 119 (420)
Q Consensus 40 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 119 (420)
+++.++++++.++ .+|..+ .+++++|++++|.+.......+.++++|++|++++|.+.... ...+..+++|++|+
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIH--EKAFSPLRKLQKLY 108 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC--GGGSTTCTTCCEEE
T ss_pred cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccC--HhHhhCcCCCCEEE
Confidence 6888888888876 566655 368888888888887776667778888888888887776552 23566777888888
Q ss_pred ccCCCCCCCCchhhccCCCCCEEEccCCcCCCCCCCCCCCCChhhhhccccccccccCCCCccccccccccCCcEEeecc
Q 037249 120 LSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSWLYRLTHFEQLSVADRPRRIPRSMASLCNLRTIYLSG 199 (420)
Q Consensus 120 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~ 199 (420)
+++|++..++.... ++|++|++++|.+.. + .+..+..+++|+.|++++
T Consensus 109 L~~n~l~~l~~~~~---~~L~~L~l~~n~i~~--------~---------------------~~~~~~~l~~L~~L~l~~ 156 (332)
T 2ft3_A 109 ISKNHLVEIPPNLP---SSLVELRIHDNRIRK--------V---------------------PKGVFSGLRNMNCIEMGG 156 (332)
T ss_dssp CCSSCCCSCCSSCC---TTCCEEECCSSCCCC--------C---------------------CSGGGSSCSSCCEEECCS
T ss_pred CCCCcCCccCcccc---ccCCEEECCCCccCc--------c---------------------CHhHhCCCccCCEEECCC
Confidence 88877776655322 677777777776642 1 122355666777777766
Q ss_pred CcccceeEEEeecCcccccchhhhhcCCCCCEEECCCcccccCCccchhhccCCcEeecCCccccCccchhhhcccCccc
Q 037249 200 CVSKELEILVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNGTLFEIHFVNLTKLS 279 (420)
Q Consensus 200 ~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~ 279 (420)
|.+.. .+..+..+..+ +|+.|++++|.+.+. |..+. ++|++|++++|.+++..+. .+..+++|+
T Consensus 157 n~l~~-----------~~~~~~~~~~l-~L~~L~l~~n~l~~l-~~~~~--~~L~~L~l~~n~i~~~~~~-~l~~l~~L~ 220 (332)
T 2ft3_A 157 NPLEN-----------SGFEPGAFDGL-KLNYLRISEAKLTGI-PKDLP--ETLNELHLDHNKIQAIELE-DLLRYSKLY 220 (332)
T ss_dssp CCCBG-----------GGSCTTSSCSC-CCSCCBCCSSBCSSC-CSSSC--SSCSCCBCCSSCCCCCCTT-SSTTCTTCS
T ss_pred Ccccc-----------CCCCcccccCC-ccCEEECcCCCCCcc-Ccccc--CCCCEEECCCCcCCccCHH-HhcCCCCCC
Confidence 65421 11334445555 788888888888765 33332 6888888888888744333 677788888
Q ss_pred eEeecCCccceecCCCCCCccceeeecccceeeccccCcccccccccccCCccEEEccCCccccCCcccccccccccEEe
Q 037249 280 VSSVNENNLTLKVNHDWVPPFQLVQLGLRSFYLDLFNNSFSGSISHFCYQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLH 359 (420)
Q Consensus 280 ~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ 359 (420)
.|++++|.+....+..+ ..+++|++|++++|+++ .+|..+..+++|+.|+
T Consensus 221 ~L~L~~N~l~~~~~~~~-----------------------------~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~ 270 (332)
T 2ft3_A 221 RLGLGHNQIRMIENGSL-----------------------------SFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVY 270 (332)
T ss_dssp CCBCCSSCCCCCCTTGG-----------------------------GGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEE
T ss_pred EEECCCCcCCcCChhHh-----------------------------hCCCCCCEEECCCCcCe-ecChhhhcCccCCEEE
Confidence 88877776653222111 13578999999999999 7888899999999999
Q ss_pred ccCCccccccCccccc------cCCCceEeCCCcccc--cccchhhhhcCCCceEEEeeccc
Q 037249 360 LHKNIFSGTIPISLKN------CTALMILDVGENEFV--GNISTWFGERFSRVVVLILRSNQ 413 (420)
Q Consensus 360 l~~n~~~~~~~~~l~~------l~~L~~L~l~~n~~~--~~~~~~l~~~~~~L~~L~l~~~~ 413 (420)
+++|++++..+..+.. .+.|+.|++++|++. +..+..+.. +++|+.+++++|+
T Consensus 271 l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~-l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 271 LHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRC-VTDRLAIQFGNYK 331 (332)
T ss_dssp CCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTT-BCCSTTEEC----
T ss_pred CCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccc-cchhhhhhccccc
Confidence 9999999666666654 478999999999886 455555554 9999999999984
No 48
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=4e-30 Score=253.30 Aligned_cols=388 Identities=12% Similarity=0.023 Sum_probs=273.2
Q ss_pred CCCCCcEEecccCCCCCCCchhhhhc-ccc-CceeecCCCcc-cCC-CCCCCCCCCCccEEEeecccccccccc----cc
Q 037249 12 DLNHLSYLGLSFNDFQGVQIPRFIGS-IRN-LRYLNLSDTQF-VGM-IPPPLGNLSNLQSLDLSLNYLYVENFL----WL 83 (420)
Q Consensus 12 ~~~~L~~L~l~~~~i~~~~~~~~~~~-l~~-L~~L~l~~~~~-~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~----~~ 83 (420)
++++|++|++++|.+++. ....+.. +++ |++|++++|.. ... ++.....+++|++|++++|.+...+.. .+
T Consensus 110 ~~~~L~~L~L~~~~i~~~-~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~ 188 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDL-DLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA 188 (592)
T ss_dssp HCTTCCEEEEESCBCCHH-HHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHH
T ss_pred hCCCCCeEEeeccEecHH-HHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHH
Confidence 789999999999988754 4445544 455 99999999872 211 222234789999999999987655422 34
Q ss_pred cCCCcccEEEcccccCCCc--cchhhhhCCCCCCcEEEccCCCCCCCCchhhccCCCCCEEEccCCcCCCCCCCCCCCCC
Q 037249 84 SGLSFLEQLDLCYVNLSKA--SDWLLVANTLPSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIP 161 (420)
Q Consensus 84 ~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 161 (420)
..+++|+.|+++++.+... ..+...+..+++|++|++++|.+..++ ..+..+++|++|++++...... .....
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~----~~~~~ 263 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV-GFFKAAANLEEFCGGSLNEDIG----MPEKY 263 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGH-HHHHHCTTCCEEEECBCCCCTT----CTTSS
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHH-HHHhhhhHHHhhcccccccccc----hHHHH
Confidence 6789999999999988733 334445678999999999999887755 4688899999999986432110 12234
Q ss_pred hhhhhccccccccccCCC-CccccccccccCCcEEeeccCcc------------cceeEEEeecCcccccchhhhhcCCC
Q 037249 162 SWLYRLTHFEQLSVADRP-RRIPRSMASLCNLRTIYLSGCVS------------KELEILVLQSSSISGHLTEQIGHFKN 228 (420)
Q Consensus 162 ~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~~~~~------------~~l~~L~l~~~~~~~~~~~~l~~~~~ 228 (420)
..+..+++|+.+++.+.. ..++..+..+++|++|++++|.+ +.++.|+++++...+.++.....+++
T Consensus 264 ~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~ 343 (592)
T 3ogk_B 264 MNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQ 343 (592)
T ss_dssp SCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTT
T ss_pred HHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCC
Confidence 456667888888887765 66777788888999999988864 67888888844333444555577899
Q ss_pred CCEEECCC-----------cccccCC-ccchhhccCCcEeecCCccccCccchhhhcccCccceEeec----CCccceec
Q 037249 229 LDTLDLGN-----------NSIVGLV-PLSLNELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVN----ENNLTLKV 292 (420)
Q Consensus 229 L~~L~l~~-----------~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~----~~~~~~~~ 292 (420)
|++|++++ +.+++.. ......+++|++|+++.+.+++.........+++|+.|+++ .+.++...
T Consensus 344 L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p 423 (592)
T 3ogk_B 344 LKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLP 423 (592)
T ss_dssp CCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCC
T ss_pred CCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCch
Confidence 99999993 4454332 22245688999999987788765555333458899999996 33443210
Q ss_pred -----CCCCCCccceeeecccceeeccccCc--cccccccc---ccCCccEEEccCCcccc-CCcccccccccccEEecc
Q 037249 293 -----NHDWVPPFQLVQLGLRSFYLDLFNNS--FSGSISHF---CYQNLMLLTLSNNKFTG-NLPNSLGSLTSLVSLHLH 361 (420)
Q Consensus 293 -----~~~~~~~~~~~~l~~~~~~l~l~~~~--~~~~~~~~---~~~~L~~L~l~~~~l~~-~~~~~~~~~~~L~~L~l~ 361 (420)
...+..+.+++ .++++.|. +++..... .+++|++|++++|++++ .++..+..+++|++|+++
T Consensus 424 ~~~~~~~~~~~~~~L~-------~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~ 496 (592)
T 3ogk_B 424 LDNGVRSLLIGCKKLR-------RFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMR 496 (592)
T ss_dssp CHHHHHHHHHHCTTCC-------EEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEE
T ss_pred HHHHHHHHHHhCCCCC-------EEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeecc
Confidence 00112233444 34443222 33222211 36889999999999985 345556889999999999
Q ss_pred CCcccccc-CccccccCCCceEeCCCcccccccchhhhhcCCCceEEEeecc
Q 037249 362 KNIFSGTI-PISLKNCTALMILDVGENEFVGNISTWFGERFSRVVVLILRSN 412 (420)
Q Consensus 362 ~n~~~~~~-~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~~L~~L~l~~~ 412 (420)
+|.+++.. +..+..+++|++|++++|++++.+...+++.+|.+....+..+
T Consensus 497 ~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 497 GCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp SCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred CCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 99987543 4445689999999999999999888888888998887766543
No 49
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.95 E-value=4.8e-28 Score=218.50 Aligned_cols=248 Identities=27% Similarity=0.355 Sum_probs=131.3
Q ss_pred cCceeecCCCcccC--CCCCCCCCCCCccEEEeec-ccccccccccccCCCcccEEEcccccCCCccchhhhhCCCCCCc
Q 037249 40 NLRYLNLSDTQFVG--MIPPPLGNLSNLQSLDLSL-NYLYVENFLWLSGLSFLEQLDLCYVNLSKASDWLLVANTLPSLV 116 (420)
Q Consensus 40 ~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 116 (420)
++++|+++++.+.+ .+|..+.++++|++|++++ |.+....+..+.+ +++|+
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~--------------------------l~~L~ 104 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK--------------------------LTQLH 104 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGG--------------------------CTTCS
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhc--------------------------CCCCC
Confidence 45555555555554 4555555555555555553 4444333333444 44555
Q ss_pred EEEccCCCCCCCCchhhccCCCCCEEEccCCcCCCCCCCCCCCCChhhhhccccccccccCCCCccccccccccCCcEEe
Q 037249 117 ELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSWLYRLTHFEQLSVADRPRRIPRSMASLCNLRTIY 196 (420)
Q Consensus 117 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~ 196 (420)
+|++++|.+....+..+..+++|++|++++|.+.. ..|..+..+++|++|+
T Consensus 105 ~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-----------------------------~~p~~~~~l~~L~~L~ 155 (313)
T 1ogq_A 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG-----------------------------TLPPSISSLPNLVGIT 155 (313)
T ss_dssp EEEEEEECCEEECCGGGGGCTTCCEEECCSSEEES-----------------------------CCCGGGGGCTTCCEEE
T ss_pred EEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCC-----------------------------cCChHHhcCCCCCeEE
Confidence 55555554443333345555555555555555431 1223333334444444
Q ss_pred eccCcccceeEEEeecCcccccchhhhhcCC-CCCEEECCCcccccCCccchhhccCCcEeecCCccccCccchhhhccc
Q 037249 197 LSGCVSKELEILVLQSSSISGHLTEQIGHFK-NLDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNGTLFEIHFVNL 275 (420)
Q Consensus 197 l~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 275 (420)
+++|. +++..+..+..++ .|+.|++++|.+.+..|..+..++ |++|++++|.+++..+. .+..+
T Consensus 156 L~~N~-------------l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~-~~~~l 220 (313)
T 1ogq_A 156 FDGNR-------------ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASV-LFGSD 220 (313)
T ss_dssp CCSSC-------------CEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGG-GCCTT
T ss_pred CcCCc-------------ccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCH-HHhcC
Confidence 33322 2223344444454 566666666666555555555554 66666666666543333 44555
Q ss_pred CccceEeecCCccceecCCCCCCccceeeecccceeeccccCcccccccccccCCccEEEccCCccccCCcccccccccc
Q 037249 276 TKLSVSSVNENNLTLKVNHDWVPPFQLVQLGLRSFYLDLFNNSFSGSISHFCYQNLMLLTLSNNKFTGNLPNSLGSLTSL 355 (420)
Q Consensus 276 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L 355 (420)
++|+.|++++|.+....+. ...+++|++|++++|++++.+|..+..+++|
T Consensus 221 ~~L~~L~L~~N~l~~~~~~------------------------------~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 270 (313)
T 1ogq_A 221 KNTQKIHLAKNSLAFDLGK------------------------------VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270 (313)
T ss_dssp SCCSEEECCSSEECCBGGG------------------------------CCCCTTCCEEECCSSCCEECCCGGGGGCTTC
T ss_pred CCCCEEECCCCceeeecCc------------------------------ccccCCCCEEECcCCcccCcCChHHhcCcCC
Confidence 5555555555444311110 0012467777777777766667777777777
Q ss_pred cEEeccCCccccccCccccccCCCceEeCCCcc
Q 037249 356 VSLHLHKNIFSGTIPISLKNCTALMILDVGENE 388 (420)
Q Consensus 356 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 388 (420)
++|++++|++++.+|.. ..+++|+.+++++|+
T Consensus 271 ~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 271 HSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp CEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred CEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 77777777777666654 667777777777775
No 50
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.95 E-value=5.6e-28 Score=218.04 Aligned_cols=189 Identities=26% Similarity=0.364 Sum_probs=137.1
Q ss_pred ccccccccccCCcEEeeccCcccceeEEEeecCcccccchhhhhcCCCCCEEECCCcccccCCccchhhcc-CCcEeecC
Q 037249 181 RIPRSMASLCNLRTIYLSGCVSKELEILVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELS-KLRILHLP 259 (420)
Q Consensus 181 ~~~~~~~~~~~L~~L~l~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~ 259 (420)
..|..+..+++|++|++++|. +++..+..+..+++|++|++++|++.+..|..+..++ +|++|+++
T Consensus 116 ~~p~~~~~l~~L~~L~Ls~N~-------------l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~ 182 (313)
T 1ogq_A 116 AIPDFLSQIKTLVTLDFSYNA-------------LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS 182 (313)
T ss_dssp ECCGGGGGCTTCCEEECCSSE-------------EESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECC
T ss_pred cCCHHHhCCCCCCEEeCCCCc-------------cCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECc
Confidence 345556666666666665543 3335566666777777777777777655566666666 67777777
Q ss_pred CccccCccchhhhcccCccceEeecCCccceecCCCCCCccceeeecccceeeccccCcccccccccccCCccEEEccCC
Q 037249 260 DNKLNGTLFEIHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLGLRSFYLDLFNNSFSGSISHFCYQNLMLLTLSNN 339 (420)
Q Consensus 260 ~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~ 339 (420)
+|.+++..+. .+..++ |+.|++++|.+....+..+. .+++|++|++++|
T Consensus 183 ~N~l~~~~~~-~~~~l~-L~~L~Ls~N~l~~~~~~~~~-----------------------------~l~~L~~L~L~~N 231 (313)
T 1ogq_A 183 RNRLTGKIPP-TFANLN-LAFVDLSRNMLEGDASVLFG-----------------------------SDKNTQKIHLAKN 231 (313)
T ss_dssp SSEEEEECCG-GGGGCC-CSEEECCSSEEEECCGGGCC-----------------------------TTSCCSEEECCSS
T ss_pred CCeeeccCCh-HHhCCc-ccEEECcCCcccCcCCHHHh-----------------------------cCCCCCEEECCCC
Confidence 7776655554 455554 66666666665432221111 3578999999999
Q ss_pred ccccCCcccccccccccEEeccCCccccccCccccccCCCceEeCCCcccccccchhhhhcCCCceEEEeeccc-ccc
Q 037249 340 KFTGNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVGENEFVGNISTWFGERFSRVVVLILRSNQ-FRG 416 (420)
Q Consensus 340 ~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~~L~~L~l~~~~-~~~ 416 (420)
++++..+. +..+++|++|++++|.+.+.+|..+..+++|++|++++|++++.+|.. . .+++|+.+++++|+ +.|
T Consensus 232 ~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~-~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 232 SLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-G-NLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp EECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-T-TGGGSCGGGTCSSSEEES
T ss_pred ceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-c-cccccChHHhcCCCCccC
Confidence 99865554 788999999999999999899999999999999999999999888876 4 48999999999998 444
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=2.6e-27 Score=217.73 Aligned_cols=284 Identities=19% Similarity=0.181 Sum_probs=181.0
Q ss_pred cccCceeecCCCcccCCCCCCCCCCCCccEEEeecccccccccccccCCCcccEEEcccccCCCccchhhhhCCCCCCcE
Q 037249 38 IRNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENFLWLSGLSFLEQLDLCYVNLSKASDWLLVANTLPSLVE 117 (420)
Q Consensus 38 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 117 (420)
|+.....+.+++.++ .+|..+. ++|++|++++|.+.......+.++++|+.|++++|.+..... ..+..+++|++
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~ 104 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEE--DSFSSLGSLEH 104 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECT--TTTTTCTTCCE
T ss_pred CCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCH--hhcCCCCCCCE
Confidence 444445566666655 4454332 366666666666665555556666666666666666654421 24556677777
Q ss_pred EEccCCCCCCCCchhhccCCCCCEEEccCCcCCCCCCCCCCCCChhhhhccccccccccCCCCccccccccccCCcEEee
Q 037249 118 LRLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSWLYRLTHFEQLSVADRPRRIPRSMASLCNLRTIYL 197 (420)
Q Consensus 118 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l 197 (420)
|++++|++..++...+..+++|++|++++|.+.. ++. ...+..+++|+.|++
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--------l~~--------------------~~~~~~l~~L~~L~l 156 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT--------LGE--------------------TSLFSHLTKLQILRV 156 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS--------SCS--------------------SCSCTTCTTCCEEEE
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc--------cCc--------------------hhhhccCCCCcEEEC
Confidence 7777777777666556777777777777776642 110 013444555555555
Q ss_pred ccCcccceeEEEeecCcccccchhhhhcCCCCCEEECCCcccccCCccchhhccCCcEeecCCccccCccchhhhcccCc
Q 037249 198 SGCVSKELEILVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNGTLFEIHFVNLTK 277 (420)
Q Consensus 198 ~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~ 277 (420)
++|. .+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.++ .++...+..+++
T Consensus 157 ~~n~------------~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~ 223 (353)
T 2z80_A 157 GNMD------------TFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSS 223 (353)
T ss_dssp EESS------------SCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTT
T ss_pred CCCc------------cccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhccc
Confidence 5442 122233445566677777777777777666677777778888888877765 444445556778
Q ss_pred cceEeecCCccceecCCCCCCccceeeecccceeeccccCcccccccccccCCccEEEccCCcccc----CCcccccccc
Q 037249 278 LSVSSVNENNLTLKVNHDWVPPFQLVQLGLRSFYLDLFNNSFSGSISHFCYQNLMLLTLSNNKFTG----NLPNSLGSLT 353 (420)
Q Consensus 278 L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~----~~~~~~~~~~ 353 (420)
|+.|++++|.+.......+... .....++.++++++.+++ .+|..+..++
T Consensus 224 L~~L~L~~n~l~~~~~~~l~~~--------------------------~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~ 277 (353)
T 2z80_A 224 VECLELRDTDLDTFHFSELSTG--------------------------ETNSLIKKFTFRNVKITDESLFQVMKLLNQIS 277 (353)
T ss_dssp EEEEEEESCBCTTCCCC--------------------------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCT
T ss_pred ccEEECCCCccccccccccccc--------------------------cccchhhccccccccccCcchhhhHHHHhccc
Confidence 8888887777654322111100 012457777777777663 4677788899
Q ss_pred cccEEeccCCccccccCcc-ccccCCCceEeCCCcccccccc
Q 037249 354 SLVSLHLHKNIFSGTIPIS-LKNCTALMILDVGENEFVGNIS 394 (420)
Q Consensus 354 ~L~~L~l~~n~~~~~~~~~-l~~l~~L~~L~l~~n~~~~~~~ 394 (420)
+|++|++++|.++ .+|.. +..+++|++|++++|++.+..+
T Consensus 278 ~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 278 GLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp TCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 9999999999998 56655 5889999999999999887665
No 52
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.95 E-value=4.7e-29 Score=245.79 Aligned_cols=160 Identities=18% Similarity=0.151 Sum_probs=93.7
Q ss_pred cCCCCCCcEEecccCC-CCCCC-------------chhhhhccccCceeecCCCcccCCCCCCCC-CCCCccEEEeecc-
Q 037249 10 LLDLNHLSYLGLSFND-FQGVQ-------------IPRFIGSIRNLRYLNLSDTQFVGMIPPPLG-NLSNLQSLDLSLN- 73 (420)
Q Consensus 10 ~~~~~~L~~L~l~~~~-i~~~~-------------~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~- 73 (420)
+.++++|++|+++++. +.+.. +......+++|++|++++|.+++..+..+. .+++|++|++++|
T Consensus 62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~ 141 (594)
T 2p1m_B 62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE 141 (594)
T ss_dssp HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE
T ss_pred HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC
Confidence 4567788888887764 21111 123344677888888888876654444443 5778888888877
Q ss_pred ccccccccc-ccCCCcccEEEcccccCCCcc--chhhhhCCCCCCcEEEccCCCCCCCCchh----hccCCCCCEEEccC
Q 037249 74 YLYVENFLW-LSGLSFLEQLDLCYVNLSKAS--DWLLVANTLPSLVELRLSNCQLHHLPPLT----ISNFSSLTVLDLSF 146 (420)
Q Consensus 74 ~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----l~~~~~L~~L~l~~ 146 (420)
.+....... +..+++|++|++++|.+.... .+......+++|++|++++|. ..+.... ...+++|++|++++
T Consensus 142 ~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~ 220 (594)
T 2p1m_B 142 GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNR 220 (594)
T ss_dssp EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCT
T ss_pred CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCC
Confidence 344332322 346788888888877755432 122233467788888888775 2222222 24467888888877
Q ss_pred CcCCCCCCCCCCCCChhhhhccccccccccC
Q 037249 147 SQFDNSLIPGWGPIPSWLYRLTHFEQLSVAD 177 (420)
Q Consensus 147 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 177 (420)
|... ..++..+..+++|+.|++..
T Consensus 221 ~~~~-------~~l~~~~~~~~~L~~L~l~~ 244 (594)
T 2p1m_B 221 AVPL-------EKLATLLQRAPQLEELGTGG 244 (594)
T ss_dssp TSCH-------HHHHHHHHHCTTCSEEECSB
T ss_pred CCcH-------HHHHHHHhcCCcceEccccc
Confidence 6211 11444555566666665443
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=1.5e-26 Score=208.38 Aligned_cols=183 Identities=22% Similarity=0.197 Sum_probs=94.4
Q ss_pred CccEEEeecccccccccccccCCCcccEEEcccccCCCccchhhhhCCCCCCcEEEccCCCCCCCCchhhccCCCCCEEE
Q 037249 64 NLQSLDLSLNYLYVENFLWLSGLSFLEQLDLCYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPLTISNFSSLTVLD 143 (420)
Q Consensus 64 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 143 (420)
+|++|++++|.+...+...+.++++|+.|++++|.+.........+..+++|++|++++|.+..++. .+..+++|++|+
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~-~~~~l~~L~~L~ 107 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLD 107 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEE-EEETCTTCCEEE
T ss_pred CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChh-hcCCCCCCCEEE
Confidence 4444444444444333333444444444444444443322111223346666666666666655443 355666677777
Q ss_pred ccCCcCCCCCCCCCCCCChhhhhccccccccccCCCCccccccccccCCcEEeeccCcccceeEEEeecCcccccchhhh
Q 037249 144 LSFSQFDNSLIPGWGPIPSWLYRLTHFEQLSVADRPRRIPRSMASLCNLRTIYLSGCVSKELEILVLQSSSISGHLTEQI 223 (420)
Q Consensus 144 l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~L~l~~~~~~~~~~~~l 223 (420)
+++|.+... + ....+..+++|+.|++++|.+ .+..+..+
T Consensus 108 l~~n~l~~~--------~--------------------~~~~~~~l~~L~~L~l~~n~l-------------~~~~~~~~ 146 (306)
T 2z66_A 108 FQHSNLKQM--------S--------------------EFSVFLSLRNLIYLDISHTHT-------------RVAFNGIF 146 (306)
T ss_dssp CTTSEEESS--------T--------------------TTTTTTTCTTCCEEECTTSCC-------------EECSTTTT
T ss_pred CCCCccccc--------c--------------------cchhhhhccCCCEEECCCCcC-------------Cccchhhc
Confidence 766665320 0 012234444555555544432 22344455
Q ss_pred hcCCCCCEEECCCccccc-CCccchhhccCCcEeecCCccccCccchhhhcccCccceEeecCCccc
Q 037249 224 GHFKNLDTLDLGNNSIVG-LVPLSLNELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLT 289 (420)
Q Consensus 224 ~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~ 289 (420)
..+++|+.|++++|.+.+ ..+..+..+++|++|++++|.+++..+. .+..+++|+.|++++|.+.
T Consensus 147 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~ 212 (306)
T 2z66_A 147 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT-AFNSLSSLQVLNMSHNNFF 212 (306)
T ss_dssp TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTSCCS
T ss_pred ccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHH-HhcCCCCCCEEECCCCccC
Confidence 566677777777777665 3455666667777777777766533232 4455555555555555443
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=1.6e-25 Score=201.68 Aligned_cols=233 Identities=20% Similarity=0.221 Sum_probs=148.0
Q ss_pred CCCcEEEccCCCCCCCCchhhccCCCCCEEEccCCcCCCCCCCCCCCCChhhhhccccccccccCCC-CccccccccccC
Q 037249 113 PSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSWLYRLTHFEQLSVADRP-RRIPRSMASLCN 191 (420)
Q Consensus 113 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~ 191 (420)
+++++|++++|++..++...+..+++|++|++++|.+... +..+..+..+++|+.|+++++. ..++..+..+++
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-----~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~ 102 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFK-----GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ 102 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEE-----EEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTT
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcc-----cCcccccccccccCEEECCCCccccChhhcCCCCC
Confidence 4666666666666666655566666666676666665320 0012334444555555555554 344555666667
Q ss_pred CcEEeeccCcccceeEEEeecCcccccch-hhhhcCCCCCEEECCCcccccCCccchhhccCCcEeecCCccccCccchh
Q 037249 192 LRTIYLSGCVSKELEILVLQSSSISGHLT-EQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNGTLFEI 270 (420)
Q Consensus 192 L~~L~l~~~~~~~l~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~ 270 (420)
|++|++++|.+. +..+ ..+..+++|+.|++++|.+....+..+..+++|++|++++|.+++.....
T Consensus 103 L~~L~l~~n~l~-------------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 169 (306)
T 2z66_A 103 LEHLDFQHSNLK-------------QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 169 (306)
T ss_dssp CCEEECTTSEEE-------------SSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECS
T ss_pred CCEEECCCCccc-------------ccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchh
Confidence 777776665432 2222 34566777777777777777666666777777777777777776422222
Q ss_pred hhcccCccceEeecCCccceecCCCCCCccceeeecccceeeccccCcccccccccccCCccEEEccCCccccCCccccc
Q 037249 271 HFVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLGLRSFYLDLFNNSFSGSISHFCYQNLMLLTLSNNKFTGNLPNSLG 350 (420)
Q Consensus 271 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~ 350 (420)
.+..+++|+.|++++|.+....+..+. .+++|++|++++|++++..+..+.
T Consensus 170 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~-----------------------------~l~~L~~L~L~~N~l~~~~~~~~~ 220 (306)
T 2z66_A 170 IFTELRNLTFLDLSQCQLEQLSPTAFN-----------------------------SLSSLQVLNMSHNNFFSLDTFPYK 220 (306)
T ss_dssp CCTTCTTCCEEECTTSCCCEECTTTTT-----------------------------TCTTCCEEECTTSCCSBCCSGGGT
T ss_pred HHhhCcCCCEEECCCCCcCCcCHHHhc-----------------------------CCCCCCEEECCCCccCccChhhcc
Confidence 566677777777777666543332222 235788888888888766666677
Q ss_pred ccccccEEeccCCccccccCccccccC-CCceEeCCCcccccc
Q 037249 351 SLTSLVSLHLHKNIFSGTIPISLKNCT-ALMILDVGENEFVGN 392 (420)
Q Consensus 351 ~~~~L~~L~l~~n~~~~~~~~~l~~l~-~L~~L~l~~n~~~~~ 392 (420)
.+++|+.|++++|.+.+..+..+..++ +|++|++++|++.+.
T Consensus 221 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 221 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp TCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred CcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 788888888888888777777777774 788888888877654
No 55
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=1.2e-26 Score=209.77 Aligned_cols=159 Identities=21% Similarity=0.221 Sum_probs=122.4
Q ss_pred CCCCCEEECCCcccccCCccchhhccCCcEeecCCccccCccchhhhcccCccceEeecCCccceecCCCCCCccceeee
Q 037249 226 FKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQL 305 (420)
Q Consensus 226 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l 305 (420)
+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+......+++|+.|++++|.+......
T Consensus 119 ~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~----------- 187 (317)
T 3o53_A 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ----------- 187 (317)
T ss_dssp CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-----------
T ss_pred cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc-----------
Confidence 567888888888888876777888888999999988887554443345788888888888877643211
Q ss_pred cccceeeccccCcccccccccccCCccEEEccCCccccCCcccccccccccEEeccCCccccccCccccccCCCceEeCC
Q 037249 306 GLRSFYLDLFNNSFSGSISHFCYQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVG 385 (420)
Q Consensus 306 ~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 385 (420)
..+++|++|++++|++++ ++..+..+++|+.|++++|.++ .+|..+..+++|+.|+++
T Consensus 188 --------------------~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~ 245 (317)
T 3o53_A 188 --------------------VVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLR 245 (317)
T ss_dssp --------------------CCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECT
T ss_pred --------------------cccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEcc
Confidence 124689999999999984 4455888999999999999998 678888889999999999
Q ss_pred Ccccc-cccchhhhhcCCCceEEEeecc-ccccCC
Q 037249 386 ENEFV-GNISTWFGERFSRVVVLILRSN-QFRGLL 418 (420)
Q Consensus 386 ~n~~~-~~~~~~l~~~~~~L~~L~l~~~-~~~~~~ 418 (420)
+|++. +..+.++.. +++|+.|++++| .++|..
T Consensus 246 ~N~~~~~~~~~~~~~-~~~L~~l~l~~~~~l~~~~ 279 (317)
T 3o53_A 246 GNGFHCGTLRDFFSK-NQRVQTVAKQTVKKLTGQN 279 (317)
T ss_dssp TCCCBHHHHHHHHHT-CHHHHHHHHHHHHHHHSSS
T ss_pred CCCccCcCHHHHHhc-cccceEEECCCchhccCCc
Confidence 99988 556666665 888888888854 444443
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=1.9e-25 Score=205.29 Aligned_cols=257 Identities=17% Similarity=0.157 Sum_probs=157.3
Q ss_pred CCCcEEEccCCCCCCCCchhhccCCCCCEEEccCCcCCCCCCCCCCCCChhhhhccccccccccCCCCccccccccccCC
Q 037249 113 PSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSWLYRLTHFEQLSVADRPRRIPRSMASLCNL 192 (420)
Q Consensus 113 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L 192 (420)
++|++|++++|.+..++...+..+++|++|++++|.++. ..+..+..+++|
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-----------------------------~~~~~~~~l~~L 102 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT-----------------------------IEEDSFSSLGSL 102 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCE-----------------------------ECTTTTTTCTTC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCc-----------------------------cCHhhcCCCCCC
Confidence 355555555555555554445555555555555555431 112234444445
Q ss_pred cEEeeccCcccceeEEEeecCcccccchhhhhcCCCCCEEECCCcccccCCc-cchhhccCCcEeecCCccccCccchhh
Q 037249 193 RTIYLSGCVSKELEILVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVP-LSLNELSKLRILHLPDNKLNGTLFEIH 271 (420)
Q Consensus 193 ~~L~l~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~ 271 (420)
++|++++|.+ ++..+..+..+++|++|++++|++.+... ..+..+++|++|++++|...+.++...
T Consensus 103 ~~L~Ls~n~l-------------~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 169 (353)
T 2z80_A 103 EHLDLSYNYL-------------SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKD 169 (353)
T ss_dssp CEEECCSSCC-------------SSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTT
T ss_pred CEEECCCCcC-------------CcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHH
Confidence 5544444332 22333445556666666666666655432 345556666666666663222333335
Q ss_pred hcccCccceEeecCCccceecCCCCCCccceeeecccceeeccccCccccccccc--ccCCccEEEccCCccccCCcccc
Q 037249 272 FVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLGLRSFYLDLFNNSFSGSISHF--CYQNLMLLTLSNNKFTGNLPNSL 349 (420)
Q Consensus 272 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~--~~~~L~~L~l~~~~l~~~~~~~~ 349 (420)
+.++++|+.+++++|.+....+..+.....++ ++++++|.+....... .+++|++|++++|++++..+..+
T Consensus 170 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~-------~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 242 (353)
T 2z80_A 170 FAGLTFLEELEIDASDLQSYEPKSLKSIQNVS-------HLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSEL 242 (353)
T ss_dssp TTTCCEEEEEEEEETTCCEECTTTTTTCSEEE-------EEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC--
T ss_pred ccCCCCCCEEECCCCCcCccCHHHHhccccCC-------eecCCCCccccchhhhhhhcccccEEECCCCcccccccccc
Confidence 55666666666666666655555555555544 3444455554333322 35899999999999986544333
Q ss_pred ---cccccccEEeccCCcccc----ccCccccccCCCceEeCCCcccccccchhhhhcCCCceEEEeeccccccCCC
Q 037249 350 ---GSLTSLVSLHLHKNIFSG----TIPISLKNCTALMILDVGENEFVGNISTWFGERFSRVVVLILRSNQFRGLLP 419 (420)
Q Consensus 350 ---~~~~~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~ 419 (420)
...+.++.++++++.+.+ .+|+.+..+++|++|++++|+++ .+|..+...+++|++|++++|++++..|
T Consensus 243 ~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 243 STGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp ----CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 346778888888888764 46778899999999999999998 6676654459999999999999988754
No 57
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=1.4e-27 Score=235.22 Aligned_cols=382 Identities=13% Similarity=0.090 Sum_probs=240.3
Q ss_pred cEEecccCCCCCCCchhhhhccccCceeecCCCcccCC---CCCC------------CCCCCCccEEEeecccccccccc
Q 037249 17 SYLGLSFNDFQGVQIPRFIGSIRNLRYLNLSDTQFVGM---IPPP------------LGNLSNLQSLDLSLNYLYVENFL 81 (420)
Q Consensus 17 ~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~---~~~~------------l~~l~~L~~L~l~~~~~~~~~~~ 81 (420)
+.+++..+... .....+.++++|++|+++++..... .|.. ...+++|++|+++++.+......
T Consensus 46 ~~l~~~~~~~~--~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~ 123 (594)
T 2p1m_B 46 RKVFIGNCYAV--SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLE 123 (594)
T ss_dssp CEEEESSTTSS--CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHH
T ss_pred eEEeecccccc--CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHH
Confidence 34566554332 3445677899999999999863211 2211 23578999999999988777666
Q ss_pred ccc-CCCcccEEEcccccCCCccchhhhhCCCCCCcEEEccCCCCCCCCchhh----ccCCCCCEEEccCCc--CCCCCC
Q 037249 82 WLS-GLSFLEQLDLCYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPLTI----SNFSSLTVLDLSFSQ--FDNSLI 154 (420)
Q Consensus 82 ~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l----~~~~~L~~L~l~~~~--~~~~~~ 154 (420)
.+. .+++|++|++++|..............+++|++|++++|.+.+.....+ ..+++|++|+++++. +..
T Consensus 124 ~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~--- 200 (594)
T 2p1m_B 124 LIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSF--- 200 (594)
T ss_dssp HHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCH---
T ss_pred HHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCH---
Confidence 664 6899999999998433222234455679999999999998776554333 367899999999986 211
Q ss_pred CCCCCCChhhhhccccccccccCCC--CccccccccccCCcEEeeccCc-------------------------------
Q 037249 155 PGWGPIPSWLYRLTHFEQLSVADRP--RRIPRSMASLCNLRTIYLSGCV------------------------------- 201 (420)
Q Consensus 155 ~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~~~~L~~L~l~~~~------------------------------- 201 (420)
..+......+++|+.|++.++. ..++..+..+++|++|.++.+.
T Consensus 201 ---~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~ 277 (594)
T 2p1m_B 201 ---SALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAV 277 (594)
T ss_dssp ---HHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCC
T ss_pred ---HHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccc
Confidence 1123344567999999999884 4466677778888888765442
Q ss_pred ----------ccceeEEEeecCcccccc-hhhhhcCCCCCEEECCCcccccC-CccchhhccCCcEeecCC---------
Q 037249 202 ----------SKELEILVLQSSSISGHL-TEQIGHFKNLDTLDLGNNSIVGL-VPLSLNELSKLRILHLPD--------- 260 (420)
Q Consensus 202 ----------~~~l~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~--------- 260 (420)
.+.++.|++++|.+++.. ...+..+++|+.|++++| +.+. .+.....+++|++|++.+
T Consensus 278 ~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~ 356 (594)
T 2p1m_B 278 PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPN 356 (594)
T ss_dssp GGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCS
T ss_pred hhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccC
Confidence 145566666666544322 222445566666666655 2221 111222356666666622
Q ss_pred ccccCccchhhhcccCccceEeecCCccceecCCCCC-Cccceeeecccceeeccc--c----Ccccccc-----c--cc
Q 037249 261 NKLNGTLFEIHFVNLTKLSVSSVNENNLTLKVNHDWV-PPFQLVQLGLRSFYLDLF--N----NSFSGSI-----S--HF 326 (420)
Q Consensus 261 ~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~-~~~~~~~l~~~~~~l~l~--~----~~~~~~~-----~--~~ 326 (420)
+.+++........++++|+.|.+..+.++........ .++.++ .++++ + +.+++.. + ..
T Consensus 357 ~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~-------~L~L~~~~~~~~~~l~~~~~~~~~~~l~~ 429 (594)
T 2p1m_B 357 VALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMT-------RFRLCIIEPKAPDYLTLEPLDIGFGAIVE 429 (594)
T ss_dssp SCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCC-------EEEEEESSTTCCCTTTCCCTHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcc-------eeEeecccCCCcccccCCchhhHHHHHHh
Confidence 2333222221223466666666655555432221111 122333 33333 2 3333211 1 11
Q ss_pred ccCCccEEEccCCccccCCcccccc-cccccEEeccCCccccccCccc-cccCCCceEeCCCcccccccchhhhhcCCCc
Q 037249 327 CYQNLMLLTLSNNKFTGNLPNSLGS-LTSLVSLHLHKNIFSGTIPISL-KNCTALMILDVGENEFVGNISTWFGERFSRV 404 (420)
Q Consensus 327 ~~~~L~~L~l~~~~l~~~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~l-~~l~~L~~L~l~~n~~~~~~~~~l~~~~~~L 404 (420)
.+++|++|++++ .+++..+..+.. +++|+.|++++|.+++..+..+ ..+++|++|++++|++++..+..+...+++|
T Consensus 430 ~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L 508 (594)
T 2p1m_B 430 HCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETM 508 (594)
T ss_dssp HCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGS
T ss_pred hCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCC
Confidence 457888888877 666544445544 7889999999999876665555 6689999999999998777776666668999
Q ss_pred eEEEeeccccc
Q 037249 405 VVLILRSNQFR 415 (420)
Q Consensus 405 ~~L~l~~~~~~ 415 (420)
++|++++|+++
T Consensus 509 ~~L~l~~~~~~ 519 (594)
T 2p1m_B 509 RSLWMSSCSVS 519 (594)
T ss_dssp SEEEEESSCCB
T ss_pred CEEeeeCCCCC
Confidence 99999999874
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=9.4e-25 Score=206.69 Aligned_cols=85 Identities=19% Similarity=0.217 Sum_probs=43.6
Q ss_pred CCccEEEccCCccccCCcccccccccccEEeccCCccccccCccccccCCCceEeCCCcccccccchhhhhcCCCceEEE
Q 037249 329 QNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVGENEFVGNISTWFGERFSRVVVLI 408 (420)
Q Consensus 329 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~~L~~L~ 408 (420)
++|++|++++|++++..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|+++...+..+.. +++|+.|+
T Consensus 207 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~ 285 (440)
T 3zyj_A 207 IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTP-LHHLERIH 285 (440)
T ss_dssp SSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSS-CTTCCEEE
T ss_pred cccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcc-ccCCCEEE
Confidence 34555555555555444455555555555555555555444445555555555555555554333333332 55555555
Q ss_pred eecccc
Q 037249 409 LRSNQF 414 (420)
Q Consensus 409 l~~~~~ 414 (420)
+++|++
T Consensus 286 L~~Np~ 291 (440)
T 3zyj_A 286 LHHNPW 291 (440)
T ss_dssp CCSSCE
T ss_pred cCCCCc
Confidence 555554
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=1.1e-24 Score=207.08 Aligned_cols=229 Identities=21% Similarity=0.174 Sum_probs=134.2
Q ss_pred CCCcEEEccCCCCCCCCchhhccCCCCCEEEccCCcCCCCCCCCCCCCChhhhhccccccccccCCCCccccccccccCC
Q 037249 113 PSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSWLYRLTHFEQLSVADRPRRIPRSMASLCNL 192 (420)
Q Consensus 113 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L 192 (420)
+++++|++++|.+..+.+..+.++++|++|++++|.+.. ..+..+..+++|
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~-----------------------------~~~~~~~~l~~L 125 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQ-----------------------------IEVGAFNGLASL 125 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-----------------------------ECTTTTTTCTTC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCC-----------------------------cChhhccCcccC
Confidence 456666666666665555556666666666666665532 112334444555
Q ss_pred cEEeeccCcccceeEEEeecCcccccchhhhhcCCCCCEEECCCcccccCCccchhhccCCcEeecCCccccCccchhhh
Q 037249 193 RTIYLSGCVSKELEILVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNGTLFEIHF 272 (420)
Q Consensus 193 ~~L~l~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~ 272 (420)
+.|++++|.+ ++..+..+..+++|++|++++|.+....+..+..+++|+.|++++|...+.++...+
T Consensus 126 ~~L~L~~n~l-------------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~ 192 (452)
T 3zyi_A 126 NTLELFDNWL-------------TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAF 192 (452)
T ss_dssp CEEECCSSCC-------------SBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTT
T ss_pred CEEECCCCcC-------------CccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhc
Confidence 5555544332 223334455566666666666666655555566666666666666543335554456
Q ss_pred cccCccceEeecCCccceecCCCCCCccceeeecccceeeccccCcccccccccccCCccEEEccCCccccCCccccccc
Q 037249 273 VNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLGLRSFYLDLFNNSFSGSISHFCYQNLMLLTLSNNKFTGNLPNSLGSL 352 (420)
Q Consensus 273 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~ 352 (420)
.++++|+.|++++|.+.... ....+++|++|++++|++++..+..|..+
T Consensus 193 ~~l~~L~~L~L~~n~l~~~~-------------------------------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 241 (452)
T 3zyi_A 193 EGLFNLKYLNLGMCNIKDMP-------------------------------NLTPLVGLEELEMSGNHFPEIRPGSFHGL 241 (452)
T ss_dssp TTCTTCCEEECTTSCCSSCC-------------------------------CCTTCTTCCEEECTTSCCSEECGGGGTTC
T ss_pred cCCCCCCEEECCCCcccccc-------------------------------cccccccccEEECcCCcCcccCcccccCc
Confidence 66666666666666554221 01123567777777777766666667777
Q ss_pred ccccEEeccCCccccccCccccccCCCceEeCCCcccccccchhhhhcCCCceEEEeeccccc
Q 037249 353 TSLVSLHLHKNIFSGTIPISLKNCTALMILDVGENEFVGNISTWFGERFSRVVVLILRSNQFR 415 (420)
Q Consensus 353 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~~L~~L~l~~~~~~ 415 (420)
++|+.|++++|.+.+..+..+..+++|+.|++++|+++...+..+.. +++|+.|++++|++.
T Consensus 242 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 242 SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTP-LRYLVELHLHHNPWN 303 (452)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTT-CTTCCEEECCSSCEE
T ss_pred cCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcc-ccCCCEEEccCCCcC
Confidence 77777777777776666666666777777777777766444444443 667777777777654
No 60
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=8.6e-25 Score=198.32 Aligned_cols=225 Identities=20% Similarity=0.271 Sum_probs=146.3
Q ss_pred CCCCcEEEccCCCCCCCCchhhccCCCCCEEEccCCcCCCCCCCCCCCCChhhhhccccccccccCCC-Ccccccccccc
Q 037249 112 LPSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSWLYRLTHFEQLSVADRP-RRIPRSMASLC 190 (420)
Q Consensus 112 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~ 190 (420)
.++++.|+++++.+..++. .+..+++|++|++++|.+.. ++..+..+++|+.|+++++. ..+|.
T Consensus 80 ~~~l~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~n~l~~--------lp~~~~~l~~L~~L~Ls~n~l~~lp~------ 144 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPD-QAFRLSHLQHMTIDAAGLME--------LPDTMQQFAGLETLTLARNPLRALPA------ 144 (328)
T ss_dssp STTCCEEEEESSCCSSCCS-CGGGGTTCSEEEEESSCCCC--------CCSCGGGGTTCSEEEEESCCCCCCCG------
T ss_pred ccceeEEEccCCCchhcCh-hhhhCCCCCEEECCCCCccc--------hhHHHhccCCCCEEECCCCccccCcH------
Confidence 5678888888888876655 46668888888888887742 33344444444444444443 33333
Q ss_pred CCcEEeeccCcccceeEEEeecCcccccchhhhhcCCCCCEEECCCcccccCCccchh---------hccCCcEeecCCc
Q 037249 191 NLRTIYLSGCVSKELEILVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLN---------ELSKLRILHLPDN 261 (420)
Q Consensus 191 ~L~~L~l~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~---------~~~~L~~L~l~~~ 261 (420)
.+..+++|+.|++++|.+.+..|..+. .+++|++|++++|
T Consensus 145 -------------------------------~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n 193 (328)
T 4fcg_A 145 -------------------------------SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT 193 (328)
T ss_dssp -------------------------------GGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE
T ss_pred -------------------------------HHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC
Confidence 444555555555555444444343332 3666777777777
Q ss_pred cccCccchhhhcccCccceEeecCCccceecCCCCCCccceeeecccceeeccccCcccccccccccCCccEEEccCCcc
Q 037249 262 KLNGTLFEIHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLGLRSFYLDLFNNSFSGSISHFCYQNLMLLTLSNNKF 341 (420)
Q Consensus 262 ~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l 341 (420)
.++ .++. .+..+++|+.|++++|.+..... ....+++|++|++++|.+
T Consensus 194 ~l~-~lp~-~l~~l~~L~~L~L~~N~l~~l~~------------------------------~l~~l~~L~~L~Ls~n~~ 241 (328)
T 4fcg_A 194 GIR-SLPA-SIANLQNLKSLKIRNSPLSALGP------------------------------AIHHLPKLEELDLRGCTA 241 (328)
T ss_dssp CCC-CCCG-GGGGCTTCCEEEEESSCCCCCCG------------------------------GGGGCTTCCEEECTTCTT
T ss_pred CcC-cchH-hhcCCCCCCEEEccCCCCCcCch------------------------------hhccCCCCCEEECcCCcc
Confidence 666 4554 46666677766666665542110 001235777888888777
Q ss_pred ccCCcccccccccccEEeccCCccccccCccccccCCCceEeCCCcccccccchhhhhcCCCceEEEeeccccc
Q 037249 342 TGNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVGENEFVGNISTWFGERFSRVVVLILRSNQFR 415 (420)
Q Consensus 342 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~~L~~L~l~~~~~~ 415 (420)
.+.+|..+..+++|++|++++|.+.+.+|..++.+++|++|++++|++.+.+|+.+.+ +++|+.+++..+.+.
T Consensus 242 ~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~-L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 242 LRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ-LPANCIILVPPHLQA 314 (328)
T ss_dssp CCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGG-SCTTCEEECCGGGSC
T ss_pred hhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhh-ccCceEEeCCHHHHH
Confidence 7777777888888888888888777777877888888888888888887788888776 888888887776543
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=4.1e-25 Score=196.87 Aligned_cols=157 Identities=20% Similarity=0.208 Sum_probs=86.4
Q ss_pred cCCCCCEEECCCcccccCCccchhhccCCcEeecCCccccCccchhhhcccCccceEeecCCccceecCCCCCCccceee
Q 037249 225 HFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQ 304 (420)
Q Consensus 225 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~ 304 (420)
.+++|+.|++++|.+....+..++.+++|++|++++|.++ .++...+..+++|+.|++++|.+....+..+.
T Consensus 127 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~------- 198 (285)
T 1ozn_A 127 GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFR------- 198 (285)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTT-------
T ss_pred CCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc-ccCHHHhcCccccCEEECCCCcccccCHhHcc-------
Confidence 3344444444444444443334445555555555555554 23222344555555555555544433222221
Q ss_pred ecccceeeccccCcccccccccccCCccEEEccCCccccCCcccccccccccEEeccCCccccccCccccccCCCceEeC
Q 037249 305 LGLRSFYLDLFNNSFSGSISHFCYQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDV 384 (420)
Q Consensus 305 l~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 384 (420)
.+++|++|++++|++++..+..+..+++|+.|++++|++....+ .......++.++.
T Consensus 199 ----------------------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~-~~~~~~~l~~~~~ 255 (285)
T 1ozn_A 199 ----------------------DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR-ARPLWAWLQKFRG 255 (285)
T ss_dssp ----------------------TCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG-GHHHHHHHHHCCS
T ss_pred ----------------------CcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC-cHHHHHHHHhccc
Confidence 12567778888888876666677888888888888888763222 1122345666667
Q ss_pred CCcccccccchhhhh-cCCCceEEEeecc
Q 037249 385 GENEFVGNISTWFGE-RFSRVVVLILRSN 412 (420)
Q Consensus 385 ~~n~~~~~~~~~l~~-~~~~L~~L~l~~~ 412 (420)
+.+.+....|+.+.. .+..++..++.+|
T Consensus 256 ~~~~~~c~~p~~l~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 256 SSSEVPCSLPQRLAGRDLKRLAANDLQGC 284 (285)
T ss_dssp EECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred ccCccccCCchHhCCcChhhcCHHHhccC
Confidence 777777777776532 3445555555555
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=3.2e-24 Score=203.00 Aligned_cols=248 Identities=21% Similarity=0.222 Sum_probs=160.1
Q ss_pred CceeecCCCcccCCCCCCCCCCCCccEEEeecccccccccccccCCCcccEEEcccccCCCccchhhhhCCCCCCcEEEc
Q 037249 41 LRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENFLWLSGLSFLEQLDLCYVNLSKASDWLLVANTLPSLVELRL 120 (420)
Q Consensus 41 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 120 (420)
.+.++.++..++ .+|..+. ++++.|++++|.+.......+.++++|+.|++++|.+..... ..+..+++|++|++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~--~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEI--GAFNGLANLNTLEL 119 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECG--GGGTTCSSCCEEEC
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccCh--hhccCCccCCEEEC
Confidence 456777777765 5665443 577888888888777777777777888888888777766532 35667778888888
Q ss_pred cCCCCCCCCchhhccCCCCCEEEccCCcCCCCCCCCCCCCChhhhhccccccccccCCCCccccccccccCCcEEeeccC
Q 037249 121 SNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSWLYRLTHFEQLSVADRPRRIPRSMASLCNLRTIYLSGC 200 (420)
Q Consensus 121 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~ 200 (420)
++|++..++...+..+++|++|++++|.+.. ..+..+..+++|+.|++++|
T Consensus 120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~-----------------------------~~~~~~~~l~~L~~L~l~~~ 170 (440)
T 3zyj_A 120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIES-----------------------------IPSYAFNRIPSLRRLDLGEL 170 (440)
T ss_dssp CSSCCSSCCTTTSCSCSSCCEEECCSCCCCE-----------------------------ECTTTTTTCTTCCEEECCCC
T ss_pred CCCcCCeeCHhHhhccccCceeeCCCCcccc-----------------------------cCHHHhhhCcccCEeCCCCC
Confidence 8888777777667777888888887777642 11223455666666666653
Q ss_pred cccceeEEEeecCcccccchhhhhcCCCCCEEECCCcccccCCccchhhccCCcEeecCCccccCccchhhhcccCccce
Q 037249 201 VSKELEILVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNGTLFEIHFVNLTKLSV 280 (420)
Q Consensus 201 ~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~ 280 (420)
.. +....+..+..+++|+.|++++|.+.+. + .+..+++|++|++++|.+++..+. .+.++++|+.
T Consensus 171 ~~------------l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~ 235 (440)
T 3zyj_A 171 KR------------LSYISEGAFEGLSNLRYLNLAMCNLREI-P-NLTPLIKLDELDLSGNHLSAIRPG-SFQGLMHLQK 235 (440)
T ss_dssp TT------------CCEECTTTTTTCSSCCEEECTTSCCSSC-C-CCTTCSSCCEEECTTSCCCEECTT-TTTTCTTCCE
T ss_pred CC------------cceeCcchhhcccccCeecCCCCcCccc-c-ccCCCcccCEEECCCCccCccChh-hhccCccCCE
Confidence 21 2223334566677778888887777755 3 456677777777777777643333 5666667776
Q ss_pred EeecCCccceecCCCCCCccceeeecccceeeccccCcccccccccccCCccEEEccCCccccCCcccccccccccEEec
Q 037249 281 SSVNENNLTLKVNHDWVPPFQLVQLGLRSFYLDLFNNSFSGSISHFCYQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHL 360 (420)
Q Consensus 281 l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l 360 (420)
|++++|.+....+..+.. +++|++|++++|++++..+..|..+++|+.|++
T Consensus 236 L~L~~n~l~~~~~~~~~~-----------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 286 (440)
T 3zyj_A 236 LWMIQSQIQVIERNAFDN-----------------------------LQSLVEINLAHNNLTLLPHDLFTPLHHLERIHL 286 (440)
T ss_dssp EECTTCCCCEECTTSSTT-----------------------------CTTCCEEECTTSCCCCCCTTTTSSCTTCCEEEC
T ss_pred EECCCCceeEEChhhhcC-----------------------------CCCCCEEECCCCCCCccChhHhccccCCCEEEc
Confidence 666666655433322221 245666667766666555555666666666766
Q ss_pred cCCccc
Q 037249 361 HKNIFS 366 (420)
Q Consensus 361 ~~n~~~ 366 (420)
++|++.
T Consensus 287 ~~Np~~ 292 (440)
T 3zyj_A 287 HHNPWN 292 (440)
T ss_dssp CSSCEE
T ss_pred CCCCcc
Confidence 666654
No 63
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=8e-24 Score=206.29 Aligned_cols=266 Identities=23% Similarity=0.238 Sum_probs=159.4
Q ss_pred ccCceeecCCCcccCCCCCCCCCCCCccEEEeecccccccccccccCCCcccEEEcccccCCCccchhhhhCCCCCCcEE
Q 037249 39 RNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENFLWLSGLSFLEQLDLCYVNLSKASDWLLVANTLPSLVEL 118 (420)
Q Consensus 39 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 118 (420)
.++++|+++++.++ .+|..+. ++|++|++++|.+...+. .+++|++|++++|.+...+. .+++|++|
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~------~l~~L~~L 106 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV------LPPGLLEL 106 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCCC------CCTTCCEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCC------CCCCCCEE
Confidence 34666777766665 5555443 566777777666654332 45666666666666665442 45667777
Q ss_pred EccCCCCCCCCchhhccCCCCCEEEccCCcCCCCCCCCCCCCChhhhhccccccccccCCC-CccccccccccCCcEEee
Q 037249 119 RLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSWLYRLTHFEQLSVADRP-RRIPRSMASLCNLRTIYL 197 (420)
Q Consensus 119 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l 197 (420)
++++|.+..++. .+++|++|++++|.++. ++.. +++|+.|++++|. ..++. ..++|+.|++
T Consensus 107 ~Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~--------lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L 168 (622)
T 3g06_A 107 SIFSNPLTHLPA----LPSGLCKLWIFGNQLTS--------LPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWA 168 (622)
T ss_dssp EECSCCCCCCCC----CCTTCCEEECCSSCCSC--------CCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEEC
T ss_pred ECcCCcCCCCCC----CCCCcCEEECCCCCCCc--------CCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEEC
Confidence 777776666553 45666777776666543 2211 1344444444443 22222 1234444444
Q ss_pred ccCcccceeEEEeecCcccccchhhhhcCCCCCEEECCCcccccCCccchhhccCCcEeecCCccccCccchhhhcccCc
Q 037249 198 SGCVSKELEILVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNGTLFEIHFVNLTK 277 (420)
Q Consensus 198 ~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~ 277 (420)
++|.+ ++. + ..+++|+.|++++|.+.+. +.. .++|+.|++++|.++ .++. ..++
T Consensus 169 ~~N~l-------------~~l-~---~~~~~L~~L~Ls~N~l~~l-~~~---~~~L~~L~L~~N~l~-~l~~----~~~~ 222 (622)
T 3g06_A 169 YNNQL-------------TSL-P---MLPSGLQELSVSDNQLASL-PTL---PSELYKLWAYNNRLT-SLPA----LPSG 222 (622)
T ss_dssp CSSCC-------------SCC-C---CCCTTCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCS-SCCC----CCTT
T ss_pred CCCCC-------------CCC-c---ccCCCCcEEECCCCCCCCC-CCc---cchhhEEECcCCccc-ccCC----CCCC
Confidence 44433 221 1 2345667777777766653 222 356677777777665 3332 2355
Q ss_pred cceEeecCCccceecCCCCCCccceeeecccceeeccccCcccccccccccCCccEEEccCCccccCCcccccccccccE
Q 037249 278 LSVSSVNENNLTLKVNHDWVPPFQLVQLGLRSFYLDLFNNSFSGSISHFCYQNLMLLTLSNNKFTGNLPNSLGSLTSLVS 357 (420)
Q Consensus 278 L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~ 357 (420)
|+.|++++|.+. +.. ..+++|++|++++|+++ .+|. .+++|+.
T Consensus 223 L~~L~Ls~N~L~-------------------------------~lp--~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~ 265 (622)
T 3g06_A 223 LKELIVSGNRLT-------------------------------SLP--VLPSELKELMVSGNRLT-SLPM---LPSGLLS 265 (622)
T ss_dssp CCEEECCSSCCS-------------------------------CCC--CCCTTCCEEECCSSCCS-CCCC---CCTTCCE
T ss_pred CCEEEccCCccC-------------------------------cCC--CCCCcCcEEECCCCCCC-cCCc---ccccCcE
Confidence 666666665544 211 12367888999998888 4554 5688889
Q ss_pred EeccCCccccccCccccccCCCceEeCCCcccccccchhhhh
Q 037249 358 LHLHKNIFSGTIPISLKNCTALMILDVGENEFVGNISTWFGE 399 (420)
Q Consensus 358 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~ 399 (420)
|++++|.++ .+|..+..+++|+.|++++|++++..+..+..
T Consensus 266 L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~ 306 (622)
T 3g06_A 266 LSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE 306 (622)
T ss_dssp EECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHH
T ss_pred EeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHh
Confidence 999999888 77888888889999999999888877776553
No 64
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.92 E-value=2.3e-24 Score=204.74 Aligned_cols=248 Identities=21% Similarity=0.211 Sum_probs=186.6
Q ss_pred CcEEecccCCCCCCCchhhhhccccCceeecCCCcccCCCCCCCCCCCCccEEEeecccccccccccccCCCcccEEEcc
Q 037249 16 LSYLGLSFNDFQGVQIPRFIGSIRNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENFLWLSGLSFLEQLDLC 95 (420)
Q Consensus 16 L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 95 (420)
.+.++.++..++ .+|..+. +++++|++++|.+....+..|.++++|++|++++|.+.......+.++++|+.|+++
T Consensus 56 ~~~v~c~~~~l~--~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 56 FSKVVCTRRGLS--EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SCEEECCSSCCS--SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CcEEEECCCCcC--ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 456777777666 4554443 678888888888887777888888888888888888888777778888888888888
Q ss_pred cccCCCccchhhhhCCCCCCcEEEccCCCCCCCCchhhccCCCCCEEEccCCcCCCCCCCCCCCCChhhhhccccccccc
Q 037249 96 YVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSWLYRLTHFEQLSV 175 (420)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l 175 (420)
+|.+...+. ..+..+++|++|++++|.+..++...+..+++|++|+++++.... .-....+..+++|+.|++
T Consensus 132 ~n~l~~~~~--~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~------~i~~~~~~~l~~L~~L~L 203 (452)
T 3zyi_A 132 DNWLTVIPS--GAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLE------YISEGAFEGLFNLKYLNL 203 (452)
T ss_dssp SSCCSBCCT--TTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCC------EECTTTTTTCTTCCEEEC
T ss_pred CCcCCccCh--hhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCcc------ccChhhccCCCCCCEEEC
Confidence 888876643 346678888888988888888877778888888888888753221 111234666778888888
Q ss_pred cCCC-CccccccccccCCcEEeeccCcccceeEEEeecCcccccchhhhhcCCCCCEEECCCcccccCCccchhhccCCc
Q 037249 176 ADRP-RRIPRSMASLCNLRTIYLSGCVSKELEILVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLR 254 (420)
Q Consensus 176 ~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 254 (420)
+++. ..+ ..+..+++|+.|++++| .+++..+..+..+++|+.|++++|.+....+..+..+++|+
T Consensus 204 ~~n~l~~~-~~~~~l~~L~~L~Ls~N-------------~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 269 (452)
T 3zyi_A 204 GMCNIKDM-PNLTPLVGLEELEMSGN-------------HFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLV 269 (452)
T ss_dssp TTSCCSSC-CCCTTCTTCCEEECTTS-------------CCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCccccc-ccccccccccEEECcCC-------------cCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCC
Confidence 7776 333 34556666666666654 44556677788888899999999988887777888888999
Q ss_pred EeecCCccccCccchhhhcccCccceEeecCCccce
Q 037249 255 ILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTL 290 (420)
Q Consensus 255 ~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~ 290 (420)
.|++++|.++ .++...+..+++|+.+++++|++..
T Consensus 270 ~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 270 ELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp EEECCSSCCS-CCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred EEECCCCcCC-ccChHHhccccCCCEEEccCCCcCC
Confidence 9999998887 4554467788889999988887654
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=2.5e-23 Score=202.78 Aligned_cols=267 Identities=23% Similarity=0.224 Sum_probs=211.8
Q ss_pred CCcEEecccCCCCCCCchhhhhccccCceeecCCCcccCCCCCCCCCCCCccEEEeecccccccccccccCCCcccEEEc
Q 037249 15 HLSYLGLSFNDFQGVQIPRFIGSIRNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENFLWLSGLSFLEQLDL 94 (420)
Q Consensus 15 ~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 94 (420)
.++.|+++++.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|.+...+. .+++|++|++
T Consensus 41 ~l~~L~ls~n~L~--~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGLT--TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSLPV----LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSCCS--CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSCCCC----CCTTCCEEEE
T ss_pred CCcEEEecCCCcC--ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCcCCC----CCCCCCEEEC
Confidence 5889999999988 5666554 89999999999988 5565 57899999999999876543 7799999999
Q ss_pred ccccCCCccchhhhhCCCCCCcEEEccCCCCCCCCchhhccCCCCCEEEccCCcCCCCCCCCCCCCChhhhhcccccccc
Q 037249 95 CYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSWLYRLTHFEQLS 174 (420)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 174 (420)
++|.+...+. .+++|++|++++|++..++. .+++|++|++++|.++. ++. .+++|+.|+
T Consensus 109 s~N~l~~l~~------~l~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~--------l~~---~~~~L~~L~ 167 (622)
T 3g06_A 109 FSNPLTHLPA------LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLAS--------LPA---LPSELCKLW 167 (622)
T ss_dssp CSCCCCCCCC------CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSC--------CCC---CCTTCCEEE
T ss_pred cCCcCCCCCC------CCCCcCEEECCCCCCCcCCC----CCCCCCEEECcCCcCCC--------cCC---ccCCCCEEE
Confidence 9999888764 57899999999999988775 25899999999998864 332 246788999
Q ss_pred ccCCC-CccccccccccCCcEEeeccCcccceeEEEeecCcccccchhhhhcCCCCCEEECCCcccccCCccchhhccCC
Q 037249 175 VADRP-RRIPRSMASLCNLRTIYLSGCVSKELEILVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKL 253 (420)
Q Consensus 175 l~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 253 (420)
++++. ..++ ..+++|+.|++++|.+..+ +. ..++|+.|++++|.+... +.. +++|
T Consensus 168 L~~N~l~~l~---~~~~~L~~L~Ls~N~l~~l--------------~~---~~~~L~~L~L~~N~l~~l-~~~---~~~L 223 (622)
T 3g06_A 168 AYNNQLTSLP---MLPSGLQELSVSDNQLASL--------------PT---LPSELYKLWAYNNRLTSL-PAL---PSGL 223 (622)
T ss_dssp CCSSCCSCCC---CCCTTCCEEECCSSCCSCC--------------CC---CCTTCCEEECCSSCCSSC-CCC---CTTC
T ss_pred CCCCCCCCCc---ccCCCCcEEECCCCCCCCC--------------CC---ccchhhEEECcCCccccc-CCC---CCCC
Confidence 98887 5555 4457778888777665321 11 247899999999999875 332 4789
Q ss_pred cEeecCCccccCccchhhhcccCccceEeecCCccceecCCCCCCccceeeecccceeeccccCcccccccccccCCccE
Q 037249 254 RILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLGLRSFYLDLFNNSFSGSISHFCYQNLML 333 (420)
Q Consensus 254 ~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~L~~ 333 (420)
+.|++++|.+++ ++ ..+++|+.|++++|.+..... .+++|+.
T Consensus 224 ~~L~Ls~N~L~~-lp----~~l~~L~~L~Ls~N~L~~lp~---------------------------------~~~~L~~ 265 (622)
T 3g06_A 224 KELIVSGNRLTS-LP----VLPSELKELMVSGNRLTSLPM---------------------------------LPSGLLS 265 (622)
T ss_dssp CEEECCSSCCSC-CC----CCCTTCCEEECCSSCCSCCCC---------------------------------CCTTCCE
T ss_pred CEEEccCCccCc-CC----CCCCcCcEEECCCCCCCcCCc---------------------------------ccccCcE
Confidence 999999999984 44 456889999998887763211 2368999
Q ss_pred EEccCCccccCCcccccccccccEEeccCCccccccCccccccC
Q 037249 334 LTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCT 377 (420)
Q Consensus 334 L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~ 377 (420)
|++++|+++ .+|..+..+++|+.|++++|++.+..|..+..++
T Consensus 266 L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 266 LSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp EECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred EeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 999999999 7788999999999999999999988877766544
No 66
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=4e-24 Score=193.94 Aligned_cols=232 Identities=17% Similarity=0.209 Sum_probs=136.0
Q ss_pred CCCcEEecccCCCCCCCchhhhhccccCceeecCCCcccCCCCCCCCCCCCccEEEeecccccccccccccCCCcccEEE
Q 037249 14 NHLSYLGLSFNDFQGVQIPRFIGSIRNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENFLWLSGLSFLEQLD 93 (420)
Q Consensus 14 ~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 93 (420)
+++++|+++++.+. .+|..+.++++|++|++++|.+. .+|..++++++|++|++++|.+... +..+.++++|++|+
T Consensus 81 ~~l~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 81 PGRVALELRSVPLP--QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRAL-PASIASLNRLRELS 156 (328)
T ss_dssp TTCCEEEEESSCCS--SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCC-CGGGGGCTTCCEEE
T ss_pred cceeEEEccCCCch--hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccC-cHHHhcCcCCCEEE
Confidence 45566666666555 35555555666666666666655 5555566666666666666655522 33355555666666
Q ss_pred cccccCCCc-cchhhhhCCCCCCcEEEccCCCCCCCCchhhccCCCCCEEEccCCcCCCCCCCCCCCCChhhhhcccccc
Q 037249 94 LCYVNLSKA-SDWLLVANTLPSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSWLYRLTHFEQ 172 (420)
Q Consensus 94 l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~ 172 (420)
+++|..... +. .+.. ..+ ...+..+++|++|++++|.++. ++..+..+++|+.
T Consensus 157 L~~n~~~~~~p~---~~~~------~~~---------~~~~~~l~~L~~L~L~~n~l~~--------lp~~l~~l~~L~~ 210 (328)
T 4fcg_A 157 IRACPELTELPE---PLAS------TDA---------SGEHQGLVNLQSLRLEWTGIRS--------LPASIANLQNLKS 210 (328)
T ss_dssp EEEETTCCCCCS---CSEE------EC----------CCCEEESTTCCEEEEEEECCCC--------CCGGGGGCTTCCE
T ss_pred CCCCCCccccCh---hHhh------ccc---------hhhhccCCCCCEEECcCCCcCc--------chHhhcCCCCCCE
Confidence 655433221 11 1110 000 0011234555555555554432 3444444555555
Q ss_pred ccccCCC-CccccccccccCCcEEeeccCcccceeEEEeecCcccccchhhhhcCCCCCEEECCCcccccCCccchhhcc
Q 037249 173 LSVADRP-RRIPRSMASLCNLRTIYLSGCVSKELEILVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELS 251 (420)
Q Consensus 173 L~l~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 251 (420)
|+++++. ..++..+..+++|+.|++++|. +.+.++..+..+++|+.|++++|.+.+..|..+..++
T Consensus 211 L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~-------------~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~ 277 (328)
T 4fcg_A 211 LKIRNSPLSALGPAIHHLPKLEELDLRGCT-------------ALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT 277 (328)
T ss_dssp EEEESSCCCCCCGGGGGCTTCCEEECTTCT-------------TCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCT
T ss_pred EEccCCCCCcCchhhccCCCCCEEECcCCc-------------chhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCC
Confidence 5555444 3455566667777777766543 3345566677778888888888877777777788888
Q ss_pred CCcEeecCCccccCccchhhhcccCccceEeecCCccc
Q 037249 252 KLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLT 289 (420)
Q Consensus 252 ~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~ 289 (420)
+|++|++++|.+.+.+|. .+..+++|+.+++..+.+.
T Consensus 278 ~L~~L~L~~n~~~~~iP~-~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 278 QLEKLDLRGCVNLSRLPS-LIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TCCEEECTTCTTCCCCCG-GGGGSCTTCEEECCGGGSC
T ss_pred CCCEEeCCCCCchhhccH-HHhhccCceEEeCCHHHHH
Confidence 888888888887777776 6778888888877765543
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.91 E-value=4.5e-25 Score=199.09 Aligned_cols=110 Identities=21% Similarity=0.200 Sum_probs=68.2
Q ss_pred hhccccCceeecCCCcccCCCCCCCCCCCCccEEEeeccccccccc-cccc-------CCCcccEEEcccccCCCc-cch
Q 037249 35 IGSIRNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENF-LWLS-------GLSFLEQLDLCYVNLSKA-SDW 105 (420)
Q Consensus 35 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~-------~l~~L~~L~l~~~~~~~~-~~~ 105 (420)
++..++|+++++++|.+ .+|..+... |++|++++|.+..... ..+. ++++|++|++++|.+... +.
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~- 113 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP- 113 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC-
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH-
Confidence 34556677777777776 455544332 6677777776643222 1122 567777777777777643 22
Q ss_pred hhhhCCCCCCcEEEccCCCCCCCCchhhccC-----CCCCEEEccCCcCC
Q 037249 106 LLVANTLPSLVELRLSNCQLHHLPPLTISNF-----SSLTVLDLSFSQFD 150 (420)
Q Consensus 106 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~-----~~L~~L~l~~~~~~ 150 (420)
...+..+++|++|++++|++... +..+..+ ++|++|++++|.+.
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~ 162 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSL 162 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCC
T ss_pred HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCc
Confidence 11126677888888888887777 3455555 77888888887764
No 68
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.91 E-value=1e-23 Score=187.87 Aligned_cols=201 Identities=22% Similarity=0.208 Sum_probs=157.0
Q ss_pred EEeecCcccccchhhhhcCCCCCEEECCCcccccCCccchhhccCCcEeecCCcc-ccCccchhhhcccCccceEeecCC
Q 037249 208 LVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNK-LNGTLFEIHFVNLTKLSVSSVNEN 286 (420)
Q Consensus 208 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~~L~~l~l~~~ 286 (420)
|+++++.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|. +. .++...+..+++|++|++++|
T Consensus 37 L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~-~~~~~~~~~l~~L~~L~l~~n 115 (285)
T 1ozn_A 37 IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR-SVDPATFHGLGRLHTLHLDRC 115 (285)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC-CCCTTTTTTCTTCCEEECTTS
T ss_pred EEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcc-ccCHHHhcCCcCCCEEECCCC
Confidence 3333444455555667778888888888888887767778888888888888886 55 443336778888888888888
Q ss_pred ccceecCCCCCCccceeeecccceeeccccCccccccccc--ccCCccEEEccCCccccCCcccccccccccEEeccCCc
Q 037249 287 NLTLKVNHDWVPPFQLVQLGLRSFYLDLFNNSFSGSISHF--CYQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNI 364 (420)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~ 364 (420)
.+....+..+.....++ ++++++|.+.+..+.. .+++|++|++++|++++..+..+..+++|+.|++++|.
T Consensus 116 ~l~~~~~~~~~~l~~L~-------~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 188 (285)
T 1ozn_A 116 GLQELGPGLFRGLAALQ-------YLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR 188 (285)
T ss_dssp CCCCCCTTTTTTCTTCC-------EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred cCCEECHhHhhCCcCCC-------EEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCc
Confidence 88776666666666666 5666777777665542 56899999999999986666678899999999999999
Q ss_pred cccccCccccccCCCceEeCCCcccccccchhhhhcCCCceEEEeeccccccC
Q 037249 365 FSGTIPISLKNCTALMILDVGENEFVGNISTWFGERFSRVVVLILRSNQFRGL 417 (420)
Q Consensus 365 ~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~ 417 (420)
+.+..|..+..+++|++|++++|.+++..+..+.. +++|++|++++|+++..
T Consensus 189 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 189 VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAP-LRALQYLRLNDNPWVCD 240 (285)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTT-CTTCCEEECCSSCEECS
T ss_pred ccccCHhHccCcccccEeeCCCCcCCcCCHHHccc-CcccCEEeccCCCccCC
Confidence 99777889999999999999999998766666765 99999999999998754
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=6.4e-24 Score=202.81 Aligned_cols=234 Identities=20% Similarity=0.217 Sum_probs=157.0
Q ss_pred CCcEEEccCCCCCCCCchhhccCCCCCEEEccCCcCCCCCCCCCCCCChhhhhccccccccccCCC-CccccccccccCC
Q 037249 114 SLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSWLYRLTHFEQLSVADRP-RRIPRSMASLCNL 192 (420)
Q Consensus 114 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~L 192 (420)
+|++|++++|.+..+++..+..+++|++|++++|.++. .+. +..+++|+.|+++++. ..++ ..++|
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--------~~~-l~~l~~L~~L~Ls~N~l~~l~----~~~~L 101 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE--------TLD-LESLSTLRTLDLNNNYVQELL----VGPSI 101 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEE--------EEE-CTTCTTCCEEECCSSEEEEEE----ECTTC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCC--------Ccc-cccCCCCCEEEecCCcCCCCC----CCCCc
Confidence 45555555555555444445555555555555554431 111 3333333333333332 1111 22556
Q ss_pred cEEeeccCcccceeEEEeecCcccccchhhhhcCCCCCEEECCCcccccCCccchhhccCCcEeecCCccccCccchhhh
Q 037249 193 RTIYLSGCVSKELEILVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNGTLFEIHF 272 (420)
Q Consensus 193 ~~L~l~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~ 272 (420)
+.|++++|.+ ++..+. .+++|+.|++++|.+.+..+..++.+++|+.|++++|.+++..+....
T Consensus 102 ~~L~L~~N~l-------------~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~ 165 (487)
T 3oja_A 102 ETLHAANNNI-------------SRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA 165 (487)
T ss_dssp CEEECCSSCC-------------CCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGG
T ss_pred CEEECcCCcC-------------CCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHh
Confidence 6666665544 333322 357899999999999888777888899999999999998866665344
Q ss_pred cccCccceEeecCCccceecCCCCCCccceeeecccceeeccccCcccccccccccCCccEEEccCCccccCCccccccc
Q 037249 273 VNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLGLRSFYLDLFNNSFSGSISHFCYQNLMLLTLSNNKFTGNLPNSLGSL 352 (420)
Q Consensus 273 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~ 352 (420)
..+++|+.|++++|.+..... ...+++|++|++++|.+++ +|..+..+
T Consensus 166 ~~l~~L~~L~Ls~N~l~~~~~-------------------------------~~~l~~L~~L~Ls~N~l~~-~~~~~~~l 213 (487)
T 3oja_A 166 ASSDTLEHLNLQYNFIYDVKG-------------------------------QVVFAKLKTLDLSSNKLAF-MGPEFQSA 213 (487)
T ss_dssp GGTTTCCEEECTTSCCCEEEC-------------------------------CCCCTTCCEEECCSSCCCE-ECGGGGGG
T ss_pred hhCCcccEEecCCCccccccc-------------------------------cccCCCCCEEECCCCCCCC-CCHhHcCC
Confidence 478899988888887764321 1124789999999999995 44458899
Q ss_pred ccccEEeccCCccccccCccccccCCCceEeCCCcccc-cccchhhhhcCCCceEEEee
Q 037249 353 TSLVSLHLHKNIFSGTIPISLKNCTALMILDVGENEFV-GNISTWFGERFSRVVVLILR 410 (420)
Q Consensus 353 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~l~~~~~~L~~L~l~ 410 (420)
++|+.|++++|.+. .+|..+..+++|+.|++++|++. +..|.++.. ++.|+.++++
T Consensus 214 ~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~-l~~L~~l~~~ 270 (487)
T 3oja_A 214 AGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK-NQRVQTVAKQ 270 (487)
T ss_dssp TTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHHHTT-CHHHHHHHHH
T ss_pred CCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHHHHh-CCCCcEEecc
Confidence 99999999999999 67888899999999999999987 455566665 8888877775
No 70
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.90 E-value=8.1e-24 Score=191.26 Aligned_cols=241 Identities=20% Similarity=0.177 Sum_probs=142.3
Q ss_pred cCCCCCCcEEecccCCCCCCCchhhhhccccCceeecCCCcccCCCCCCCCCCCCccEEEeecccccccccccccCCCcc
Q 037249 10 LLDLNHLSYLGLSFNDFQGVQIPRFIGSIRNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENFLWLSGLSFL 89 (420)
Q Consensus 10 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 89 (420)
+..+++|++|++++|.+... .+..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.... ..++|
T Consensus 30 ~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L 101 (317)
T 3o53_A 30 RQSAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSI 101 (317)
T ss_dssp HTTGGGCSEEECTTSCCCCC-CHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTC
T ss_pred hccCCCCCEEECcCCccCcC-CHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCc
Confidence 34455666677766666644 44566666667777776666654332 566666777777666654332 23666
Q ss_pred cEEEcccccCCCccchhhhhCCCCCCcEEEccCCCCCCCCchhhccCCCCCEEEccCCcCCCCCCCCCCCCChhh-hhcc
Q 037249 90 EQLDLCYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSWL-YRLT 168 (420)
Q Consensus 90 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l-~~~~ 168 (420)
+.|++++|.+..... ..+++|++|++++|++..+.+..+..+++|++|++++|.+... .+..+ ..++
T Consensus 102 ~~L~l~~n~l~~~~~-----~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-------~~~~~~~~l~ 169 (317)
T 3o53_A 102 ETLHAANNNISRVSC-----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV-------NFAELAASSD 169 (317)
T ss_dssp CEEECCSSCCSEEEE-----CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE-------EGGGGGGGTT
T ss_pred CEEECCCCccCCcCc-----cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc-------cHHHHhhccC
Confidence 666666666655432 2356666667766666666555566666666666666665420 11222 2445
Q ss_pred ccccccccCCC-CccccccccccCCcEEeeccCcccceeEEEeecCcccccchhhhhcCCCCCEEECCCcccccCCccch
Q 037249 169 HFEQLSVADRP-RRIPRSMASLCNLRTIYLSGCVSKELEILVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSL 247 (420)
Q Consensus 169 ~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 247 (420)
+|+.|+++++. ..++ ....+++|++|++++ |.+++..+ .+..+++|+.|++++|++... |..+
T Consensus 170 ~L~~L~L~~N~l~~~~-~~~~l~~L~~L~Ls~-------------N~l~~l~~-~~~~l~~L~~L~L~~N~l~~l-~~~~ 233 (317)
T 3o53_A 170 TLEHLNLQYNFIYDVK-GQVVFAKLKTLDLSS-------------NKLAFMGP-EFQSAAGVTWISLRNNKLVLI-EKAL 233 (317)
T ss_dssp TCCEEECTTSCCCEEE-CCCCCTTCCEEECCS-------------SCCCEECG-GGGGGTTCSEEECTTSCCCEE-CTTC
T ss_pred cCCEEECCCCcCcccc-cccccccCCEEECCC-------------CcCCcchh-hhcccCcccEEECcCCcccch-hhHh
Confidence 55666655554 2221 112244444444444 44443333 366777888888888887754 5566
Q ss_pred hhccCCcEeecCCccccCccchhhhcccCccceEeecCC
Q 037249 248 NELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNEN 286 (420)
Q Consensus 248 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~ 286 (420)
..+++|+.|++++|++........+..++.|+.+++.++
T Consensus 234 ~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp CCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 777788888888888763233336667777777777644
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=1e-23 Score=201.37 Aligned_cols=244 Identities=21% Similarity=0.203 Sum_probs=157.0
Q ss_pred Cchhhhhcc----ccCceeecCCCcccCCCCCCCCCCCCccEEEeecccccccccccccCCCcccEEEcccccCCCccch
Q 037249 30 QIPRFIGSI----RNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENFLWLSGLSFLEQLDLCYVNLSKASDW 105 (420)
Q Consensus 30 ~~~~~~~~l----~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 105 (420)
.++..+..+ ++|++|++++|.+....|..|..+++|++|++++|.+....+ +..+++|+.|++++|.+...+.
T Consensus 21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~- 97 (487)
T 3oja_A 21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV- 97 (487)
T ss_dssp THHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-
T ss_pred hhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-
Confidence 456555544 489999999999887777788899999999999998765544 7788888888888887765542
Q ss_pred hhhhCCCCCCcEEEccCCCCCCCCchhhccCCCCCEEEccCCcCCCCCCCCCCCCChhhhhccccccccccCCCCccccc
Q 037249 106 LLVANTLPSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSWLYRLTHFEQLSVADRPRRIPRS 185 (420)
Q Consensus 106 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 185 (420)
.++|++|++++|.+..+++. .+++|++|++++|.+.. ..+..
T Consensus 98 ------~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~-----------------------------~~~~~ 139 (487)
T 3oja_A 98 ------GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITM-----------------------------LRDLD 139 (487)
T ss_dssp ------CTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCS-----------------------------GGGBC
T ss_pred ------CCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCC-----------------------------CCchh
Confidence 37788888888877766542 35677777777777642 12334
Q ss_pred cccccCCcEEeeccCcccceeEEEeecCcccccchhhhh-cCCCCCEEECCCcccccCCccchhhccCCcEeecCCcccc
Q 037249 186 MASLCNLRTIYLSGCVSKELEILVLQSSSISGHLTEQIG-HFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKLN 264 (420)
Q Consensus 186 ~~~~~~L~~L~l~~~~~~~l~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 264 (420)
+..+++|+.|++++|. +++..+..+. .+++|+.|++++|.+.+.. ....+++|+.|++++|.++
T Consensus 140 ~~~l~~L~~L~Ls~N~-------------l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~ 204 (487)
T 3oja_A 140 EGCRSRVQYLDLKLNE-------------IDTVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLA 204 (487)
T ss_dssp GGGGSSEEEEECTTSC-------------CCEEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCC
T ss_pred hcCCCCCCEEECCCCC-------------CCCcChHHHhhhCCcccEEecCCCcccccc--ccccCCCCCEEECCCCCCC
Confidence 5556666666665543 3334444443 5677777777777777652 2234677777777777776
Q ss_pred CccchhhhcccCccceEeecCCccceecCCCCCCccceeeecccceeeccccCcccccccccccCCccEEEccCCccc-c
Q 037249 265 GTLFEIHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLGLRSFYLDLFNNSFSGSISHFCYQNLMLLTLSNNKFT-G 343 (420)
Q Consensus 265 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~ 343 (420)
+ ++. .+..+++|+.|++++|.+...+.. +. .+++|+.|++++|.+. +
T Consensus 205 ~-~~~-~~~~l~~L~~L~Ls~N~l~~lp~~-l~-----------------------------~l~~L~~L~l~~N~l~c~ 252 (487)
T 3oja_A 205 F-MGP-EFQSAAGVTWISLRNNKLVLIEKA-LR-----------------------------FSQNLEHFDLRGNGFHCG 252 (487)
T ss_dssp E-ECG-GGGGGTTCSEEECTTSCCCEECTT-CC-----------------------------CCTTCCEEECTTCCBCHH
T ss_pred C-CCH-hHcCCCCccEEEecCCcCcccchh-hc-----------------------------cCCCCCEEEcCCCCCcCc
Confidence 3 333 355666666666666655431110 00 1245666666666655 4
Q ss_pred CCcccccccccccEEecc
Q 037249 344 NLPNSLGSLTSLVSLHLH 361 (420)
Q Consensus 344 ~~~~~~~~~~~L~~L~l~ 361 (420)
.+|.++..++.|+.++++
T Consensus 253 ~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 253 TLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred chHHHHHhCCCCcEEecc
Confidence 445555566666666554
No 72
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.89 E-value=7.5e-24 Score=191.06 Aligned_cols=249 Identities=19% Similarity=0.186 Sum_probs=151.2
Q ss_pred CCCCCcEEEccCCCCCCCCchhhccCCCCCEEEccCCcCCCCCCCCCCCCChhhh-------hccccccccccCCC--Cc
Q 037249 111 TLPSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSWLY-------RLTHFEQLSVADRP--RR 181 (420)
Q Consensus 111 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~-------~~~~L~~L~l~~~~--~~ 181 (420)
..++|++|++++|.+ .++. .+... +++|+++++.+.. ..++..+. .+++|++|+++++. ..
T Consensus 41 ~~~~L~~l~l~~n~l-~~p~-~~~~~--L~~L~L~~n~l~~------~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 110 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE-ADLG-QFTDI--IKSLSLKRLTVRA------ARIPSRILFGALRVLGISGLQELTLENLEVTGT 110 (312)
T ss_dssp EEEECTTHHHHCCTT-CCCH-HHHHH--HHHCCCCEEEEEE------EECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSC
T ss_pred cCCCceeEeeccccc-ccHH-HHHHH--HhhcccccccccC------CCcCHHHHHHHHHhcCcCCccEEEccCCcccch
Confidence 345566666666666 3333 22222 5666666665532 11333332 35555556555554 23
Q ss_pred ccccc--ccccCCcEEeeccCcccceeEEEeecCcccccchhhhhcC-----CCCCEEECCCcccccCCccchhhccCCc
Q 037249 182 IPRSM--ASLCNLRTIYLSGCVSKELEILVLQSSSISGHLTEQIGHF-----KNLDTLDLGNNSIVGLVPLSLNELSKLR 254 (420)
Q Consensus 182 ~~~~~--~~~~~L~~L~l~~~~~~~l~~L~l~~~~~~~~~~~~l~~~-----~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 254 (420)
.|..+ ..+++|++|++++|.+ ++. +..+..+ ++|++|++++|++.+..+..++.+++|+
T Consensus 111 ~~~~~~~~~l~~L~~L~Ls~N~l-------------~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 176 (312)
T 1wwl_A 111 APPPLLEATGPDLNILNLRNVSW-------------ATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALS 176 (312)
T ss_dssp CCCCSSSCCSCCCSEEEEESCBC-------------SSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCC
T ss_pred hHHHHHHhcCCCccEEEccCCCC-------------cch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCC
Confidence 44433 4455555555444332 222 3333333 5666666666666655555566666666
Q ss_pred EeecCCccccCccc---hhhhcccCccceEeecCCccceecCCCCCCccceeeecccceeeccccCcccccccc--cccC
Q 037249 255 ILHLPDNKLNGTLF---EIHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLGLRSFYLDLFNNSFSGSISH--FCYQ 329 (420)
Q Consensus 255 ~L~l~~~~l~~~~~---~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~--~~~~ 329 (420)
+|++++|.+.+..+ ...+..+++|+.|++++|.+.... ..... ..++
T Consensus 177 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~----------------------------~~~~~~~~~l~ 228 (312)
T 1wwl_A 177 TLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS----------------------------GVCSALAAARV 228 (312)
T ss_dssp EEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHH----------------------------HHHHHHHHTTC
T ss_pred EEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchH----------------------------HHHHHHHhcCC
Confidence 66666666543311 111245566666665555443100 11111 1347
Q ss_pred CccEEEccCCccccCCc-ccccccccccEEeccCCccccccCccccccCCCceEeCCCcccccccchhhhhcCCCceEEE
Q 037249 330 NLMLLTLSNNKFTGNLP-NSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVGENEFVGNISTWFGERFSRVVVLI 408 (420)
Q Consensus 330 ~L~~L~l~~~~l~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~~L~~L~ 408 (420)
+|++|++++|++++..+ ..+..+++|++|++++|.++ .+|..+. ++|++|++++|++++. |. +.. +++|++|+
T Consensus 229 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~-l~~L~~L~ 302 (312)
T 1wwl_A 229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDE-LPQVGNLS 302 (312)
T ss_dssp CCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTT-SCEEEEEE
T ss_pred CCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-Hhh-CCCCCEEe
Confidence 99999999999997664 55677899999999999999 8887776 8999999999999866 55 554 99999999
Q ss_pred eeccccccC
Q 037249 409 LRSNQFRGL 417 (420)
Q Consensus 409 l~~~~~~~~ 417 (420)
+++|++++.
T Consensus 303 L~~N~l~~~ 311 (312)
T 1wwl_A 303 LKGNPFLDS 311 (312)
T ss_dssp CTTCTTTCC
T ss_pred ccCCCCCCC
Confidence 999999863
No 73
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=6.4e-24 Score=197.57 Aligned_cols=82 Identities=21% Similarity=0.210 Sum_probs=56.6
Q ss_pred CCccEEEccCCccccC----Cccccc--ccccccEEeccCCcccc----ccCccc-cccCCCceEeCCCcccccccc--h
Q 037249 329 QNLMLLTLSNNKFTGN----LPNSLG--SLTSLVSLHLHKNIFSG----TIPISL-KNCTALMILDVGENEFVGNIS--T 395 (420)
Q Consensus 329 ~~L~~L~l~~~~l~~~----~~~~~~--~~~~L~~L~l~~n~~~~----~~~~~l-~~l~~L~~L~l~~n~~~~~~~--~ 395 (420)
++|++|++++|++++. ++..+. .+++|+.|++++|.+.+ .+|..+ .++++|++|++++|++++..+ .
T Consensus 244 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~ 323 (386)
T 2ca6_A 244 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVD 323 (386)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHH
T ss_pred CCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHH
Confidence 5788888888887743 345553 37888888888888875 366666 557888888888888877764 5
Q ss_pred hhhhcCCCceEEEee
Q 037249 396 WFGERFSRVVVLILR 410 (420)
Q Consensus 396 ~l~~~~~~L~~L~l~ 410 (420)
.+.+.+++++.+.+.
T Consensus 324 ~l~~~l~~~~~~~l~ 338 (386)
T 2ca6_A 324 EIREVFSTRGRGELD 338 (386)
T ss_dssp HHHHHHHHHTCCEEC
T ss_pred HHHHHhhhcCcchhh
Confidence 555555555544443
No 74
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=2.7e-23 Score=191.47 Aligned_cols=112 Identities=19% Similarity=0.148 Sum_probs=62.0
Q ss_pred EEecccCCCCCCCchhhhhccccCceeecCCCcccCCCC----CCCCCCC-CccEEEeecccccccccccccCC-----C
Q 037249 18 YLGLSFNDFQGVQIPRFIGSIRNLRYLNLSDTQFVGMIP----PPLGNLS-NLQSLDLSLNYLYVENFLWLSGL-----S 87 (420)
Q Consensus 18 ~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~l-----~ 87 (420)
+.+++++.+++. .+..+...++|++|++++|.+....+ ..+..++ +|++|++++|.+.......+..+ +
T Consensus 2 ~~~ls~n~~~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLHPGSNP-VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECCCCTTCCH-HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred ccccccccchHH-HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 356777777644 55555555568888888887765444 4566666 77777777777666555444332 5
Q ss_pred cccEEEcccccCCCcc--chhhhhCCC-CCCcEEEccCCCCCCCCc
Q 037249 88 FLEQLDLCYVNLSKAS--DWLLVANTL-PSLVELRLSNCQLHHLPP 130 (420)
Q Consensus 88 ~L~~L~l~~~~~~~~~--~~~~~~~~~-~~L~~L~l~~~~~~~~~~ 130 (420)
+|++|++++|.+.... .+...+..+ ++|++|++++|.+.....
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 126 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSS 126 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHH
Confidence 5555555555544331 111122223 445555555554444433
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=2.7e-22 Score=177.11 Aligned_cols=218 Identities=21% Similarity=0.216 Sum_probs=112.5
Q ss_pred cEEEccCCCCCCCCchhhccCCCCCEEEccCCcCCCCCCCCCCCCChhhhhccccccccccCCCCccccccccccCCcEE
Q 037249 116 VELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSWLYRLTHFEQLSVADRPRRIPRSMASLCNLRTI 195 (420)
Q Consensus 116 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L 195 (420)
..+.+.++.+.+.. ....+++|+.|+++++.+.. ...+..+++|+.|
T Consensus 22 ~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-------------------------------~~~l~~l~~L~~L 68 (272)
T 3rfs_A 22 IKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-------------------------------VQGIQYLPNVRYL 68 (272)
T ss_dssp HHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCC-------------------------------CTTGGGCTTCCEE
T ss_pred HHHHhcCccccccc--ccccccceeeeeeCCCCccc-------------------------------ccccccCCCCcEE
Confidence 33445555444433 35667788888888777643 1123444455555
Q ss_pred eeccCcccceeEEEeecCcccccchhhhhcCCCCCEEECCCcccccCCccchhhccCCcEeecCCccccCccchhhhccc
Q 037249 196 YLSGCVSKELEILVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNGTLFEIHFVNL 275 (420)
Q Consensus 196 ~l~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 275 (420)
++++|.+.. ...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ ++...+..+
T Consensus 69 ~l~~n~l~~---------------~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l 132 (272)
T 3rfs_A 69 ALGGNKLHD---------------ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKL 132 (272)
T ss_dssp ECTTSCCCC---------------CGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTC
T ss_pred ECCCCCCCC---------------chhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCc-cCHHHhccC
Confidence 555443321 1134455556666666655555544445555566666666665552 222245555
Q ss_pred CccceEeecCCccceecCCCCCCccceeeecccceeeccccCcccccccccccCCccEEEccCCccccCCcccccccccc
Q 037249 276 TKLSVSSVNENNLTLKVNHDWVPPFQLVQLGLRSFYLDLFNNSFSGSISHFCYQNLMLLTLSNNKFTGNLPNSLGSLTSL 355 (420)
Q Consensus 276 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L 355 (420)
++|+.|++++|.+....+..+. .+++|++|++++|++++..+..+..+++|
T Consensus 133 ~~L~~L~L~~n~l~~~~~~~~~-----------------------------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 183 (272)
T 3rfs_A 133 TNLTYLNLAHNQLQSLPKGVFD-----------------------------KLTNLTELDLSYNQLQSLPEGVFDKLTQL 183 (272)
T ss_dssp TTCCEEECCSSCCCCCCTTTTT-----------------------------TCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCEEECCCCccCccCHHHhc-----------------------------cCccCCEEECCCCCcCccCHHHhcCCccC
Confidence 5565555555554432221111 12455555555555554444445555555
Q ss_pred cEEeccCCccccccCccccccCCCceEeCCCcccccccchhhhhcCCCceEEEeeccccccCCC
Q 037249 356 VSLHLHKNIFSGTIPISLKNCTALMILDVGENEFVGNISTWFGERFSRVVVLILRSNQFRGLLP 419 (420)
Q Consensus 356 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~ 419 (420)
+.|++++|.+.+..+..+..+++|++|++++|++.+ .++.|+.+++++|.++|.||
T Consensus 184 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--------~~~~l~~l~~~~n~~~g~ip 239 (272)
T 3rfs_A 184 KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--------TCPGIRYLSEWINKHSGVVR 239 (272)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC--------CTTTTHHHHHHHHHTGGGBB
T ss_pred CEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc--------cCcHHHHHHHHHHhCCCccc
Confidence 555555555554444445555555555555555542 13445555555555555554
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.88 E-value=6e-22 Score=175.50 Aligned_cols=199 Identities=22% Similarity=0.175 Sum_probs=145.7
Q ss_pred ecCcccccchhhhhcCCCCCEEECCCcccccCCccchhhccCCcEeecCCccccCccchhhhcccCccceEeecCCccce
Q 037249 211 QSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTL 290 (420)
Q Consensus 211 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~ 290 (420)
++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++ .+...+.++++|+.|++++|.+..
T Consensus 36 s~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~ 114 (276)
T 2z62_A 36 SFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLVAVETNLAS 114 (276)
T ss_dssp TTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTSCCCC
T ss_pred CCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc-cChhhhcCCccccEEECCCCCccc
Confidence 3344444455566777788888888887777666667777888888888887763 333367777888888888877776
Q ss_pred ecCCCCCCccceeeecccceeeccccCcccccc-ccc--ccCCccEEEccCCccccCCccccccccccc----EEeccCC
Q 037249 291 KVNHDWVPPFQLVQLGLRSFYLDLFNNSFSGSI-SHF--CYQNLMLLTLSNNKFTGNLPNSLGSLTSLV----SLHLHKN 363 (420)
Q Consensus 291 ~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~-~~~--~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~----~L~l~~n 363 (420)
.....+.....++ .+++++|.+.+.. +.. .+++|++|++++|++++..+..+..+++|+ .|++++|
T Consensus 115 ~~~~~~~~l~~L~-------~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 115 LENFPIGHLKTLK-------ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp STTCCCTTCTTCC-------EEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred cCchhcccCCCCC-------EEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 6555555555555 5566667766532 322 568999999999999977777888888887 8999999
Q ss_pred ccccccCccccccCCCceEeCCCcccccccchhhhhcCCCceEEEeeccccccCCC
Q 037249 364 IFSGTIPISLKNCTALMILDVGENEFVGNISTWFGERFSRVVVLILRSNQFRGLLP 419 (420)
Q Consensus 364 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~ 419 (420)
.+.+..+ ......+|++|++++|.+++..+..+.. +++|++|++++|++++..|
T Consensus 188 ~l~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 188 PMNFIQP-GAFKEIRLKELALDTNQLKSVPDGIFDR-LTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CCCEECT-TSSCSCCEEEEECCSSCCSCCCTTTTTT-CCSCCEEECCSSCBCCCTT
T ss_pred cccccCc-cccCCCcccEEECCCCceeecCHhHhcc-cccccEEEccCCcccccCC
Confidence 9984444 4444568999999999998655544554 9999999999999988765
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.88 E-value=1.9e-21 Score=171.64 Aligned_cols=175 Identities=23% Similarity=0.255 Sum_probs=112.1
Q ss_pred ecCcccccchhhhhcCCCCCEEECCCcccccCCccchhhccCCcEeecCCccccCccchhhhcccCccceEeecCCccce
Q 037249 211 QSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTL 290 (420)
Q Consensus 211 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~ 290 (420)
++|.+++..+..+..+++|++|++++|.+....+..+..+++|++|++++|.++ .++...+..+++|+.|++++|.+..
T Consensus 45 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~ 123 (270)
T 2o6q_A 45 QSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKS 123 (270)
T ss_dssp CSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCC-CCCTTTTTTCSSCCEEECCSSCCCC
T ss_pred cCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCC-cCCHhHcccccCCCEEECCCCccCe
Confidence 334444444555667777777777777777665555566777777777777766 3443356677777777777776654
Q ss_pred ecCCCCCCccceeeecccceeeccccCcccccccccccCCccEEEccCCccccCCcccccccccccEEeccCCccccccC
Q 037249 291 KVNHDWVPPFQLVQLGLRSFYLDLFNNSFSGSISHFCYQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIP 370 (420)
Q Consensus 291 ~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 370 (420)
..+..+. .+++|++|++++|++++..+..|..+++|++|++++|.+.+..+
T Consensus 124 ~~~~~~~-----------------------------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 124 LPPRVFD-----------------------------SLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp CCTTTTT-----------------------------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred eCHHHhC-----------------------------cCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 4433333 23567777777777775555556677777777777777775555
Q ss_pred ccccccCCCceEeCCCcccccccchhhhhcCCCceEEEeecccccc
Q 037249 371 ISLKNCTALMILDVGENEFVGNISTWFGERFSRVVVLILRSNQFRG 416 (420)
Q Consensus 371 ~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~~L~~L~l~~~~~~~ 416 (420)
..+..+++|++|++++|++++..+..+.. +++|++|++++|++..
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 175 GAFDKLTELKTLKLDNNQLKRVPEGAFDS-LEKLKMLQLQENPWDC 219 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTT-CTTCCEEECCSSCBCC
T ss_pred hHhccCCCcCEEECCCCcCCcCCHHHhcc-ccCCCEEEecCCCeeC
Confidence 55667777777777777776444444443 7777777777777654
No 78
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=3.7e-22 Score=182.22 Aligned_cols=209 Identities=15% Similarity=0.189 Sum_probs=142.7
Q ss_pred ccccccccccCCC---CccccccccccCCcEEeeccCcccceeEEEeecCcccccchhhhhcCCCCCEEECCCc-ccccC
Q 037249 167 LTHFEQLSVADRP---RRIPRSMASLCNLRTIYLSGCVSKELEILVLQSSSISGHLTEQIGHFKNLDTLDLGNN-SIVGL 242 (420)
Q Consensus 167 ~~~L~~L~l~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~ 242 (420)
+++|+.|+++++. ..++..+..+++|++|++++|. +++..+..+..+++|++|++++| .+.+.
T Consensus 92 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~-------------l~~~~~~~l~~~~~L~~L~L~~~~~l~~~ 158 (336)
T 2ast_B 92 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR-------------LSDPIVNTLAKNSNLVRLNLSGCSGFSEF 158 (336)
T ss_dssp CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB-------------CCHHHHHHHTTCTTCSEEECTTCBSCCHH
T ss_pred CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcc-------------cCHHHHHHHhcCCCCCEEECCCCCCCCHH
Confidence 3444444444443 1145556677777777777654 34456677778888888888888 56642
Q ss_pred -CccchhhccCCcEeecCCc-cccCccchhhhcccC-ccceEeecCCccceecCCCCCCccceeeecccceeeccccCcc
Q 037249 243 -VPLSLNELSKLRILHLPDN-KLNGTLFEIHFVNLT-KLSVSSVNENNLTLKVNHDWVPPFQLVQLGLRSFYLDLFNNSF 319 (420)
Q Consensus 243 -~~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~~~~-~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~ 319 (420)
.+..+..+++|++|++++| .+++......+..++ +|+.|++++|......
T Consensus 159 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~--------------------------- 211 (336)
T 2ast_B 159 ALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK--------------------------- 211 (336)
T ss_dssp HHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCH---------------------------
T ss_pred HHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCH---------------------------
Confidence 3555777888999999888 776542233577788 8888888887421000
Q ss_pred cccccc--cccCCccEEEccCCc-cccCCcccccccccccEEeccCCc-cccccCccccccCCCceEeCCCcccccccch
Q 037249 320 SGSISH--FCYQNLMLLTLSNNK-FTGNLPNSLGSLTSLVSLHLHKNI-FSGTIPISLKNCTALMILDVGENEFVGNIST 395 (420)
Q Consensus 320 ~~~~~~--~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 395 (420)
+.++. ..+++|++|++++|. +++..+..+..+++|++|++++|. +.......++.+++|++|++++| +++....
T Consensus 212 -~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~ 289 (336)
T 2ast_B 212 -SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQ 289 (336)
T ss_dssp -HHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHH
T ss_pred -HHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHH
Confidence 00111 135789999999998 776777788899999999999995 44344446788999999999999 6665555
Q ss_pred hhhhcCCCceEEEeeccccccCCCC
Q 037249 396 WFGERFSRVVVLILRSNQFRGLLPT 420 (420)
Q Consensus 396 ~l~~~~~~L~~L~l~~~~~~~~~~~ 420 (420)
.+.+.++. |++++|++++.+|.
T Consensus 290 ~l~~~l~~---L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 290 LLKEALPH---LQINCSHFTTIARP 311 (336)
T ss_dssp HHHHHSTT---SEESCCCSCCTTCS
T ss_pred HHHhhCcc---eEEecccCccccCC
Confidence 55543444 45899999988873
No 79
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.87 E-value=1.7e-21 Score=172.59 Aligned_cols=209 Identities=19% Similarity=0.174 Sum_probs=107.7
Q ss_pred ccCceeecCCCcccCCCCCCCCCCCCccEEEeecccccccccccccCCCcccEEEcccccCCCccchhhhhCCCCCCcEE
Q 037249 39 RNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENFLWLSGLSFLEQLDLCYVNLSKASDWLLVANTLPSLVEL 118 (420)
Q Consensus 39 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 118 (420)
++|++|++++|.++...+..+.++++|++|++++|.+.......+..+++|+.|++++|.+..... ..+..+++|++|
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L 105 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL--GAFSGLSSLQKL 105 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT--TTTTTCTTCCEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccCh--hhhcCCccccEE
Confidence 356666666666654444456666666666666666655555555666666666666665554431 234556666666
Q ss_pred EccCCCCCCCCchhhccCCCCCEEEccCCcCCCCCCCCCCCCChhhhhccccccccccCCC-Cc-cccccccccCCcEEe
Q 037249 119 RLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSWLYRLTHFEQLSVADRP-RR-IPRSMASLCNLRTIY 196 (420)
Q Consensus 119 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~-~~~~~~~~~~L~~L~ 196 (420)
++++|.+..+....+..+++|++|++++|.+.. ..++..+..+++|+.|+++++. .. .+..+..+++|+.+.
T Consensus 106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~ 179 (276)
T 2z62_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQS------FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179 (276)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC------CCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCC
T ss_pred ECCCCCccccCchhcccCCCCCEEECcCCccce------ecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccc
Confidence 666666665555455666666666666666542 1123334444444444444433 11 123333444443111
Q ss_pred eccCcccceeEEEeecCcccccchhhhhcCCCCCEEECCCcccccCCccchhhccCCcEeecCCccccC
Q 037249 197 LSGCVSKELEILVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNG 265 (420)
Q Consensus 197 l~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 265 (420)
+ .+++++|.+++..+..+ ...+|+.|++++|.+.+..+..+..+++|++|++++|++++
T Consensus 180 l---------~L~ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 180 L---------SLDLSLNPMNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp E---------EEECCSSCCCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred e---------eeecCCCcccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 0 12222233332222222 22356666666666665544445566666666666666653
No 80
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=1.3e-23 Score=195.52 Aligned_cols=280 Identities=17% Similarity=0.118 Sum_probs=142.1
Q ss_pred chhhhhccccCceeecCCCcccCC----CCCCCCCCCCccEEEeecccccccccccccCCCcccEEEcccccCCCccchh
Q 037249 31 IPRFIGSIRNLRYLNLSDTQFVGM----IPPPLGNLSNLQSLDLSLNYLYVENFLWLSGLSFLEQLDLCYVNLSKASDWL 106 (420)
Q Consensus 31 ~~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 106 (420)
+...+..+++|++|++++|.+... ++..+..+++|++|++++|.+........ .....+.
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~----------------~~~~~l~ 87 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIP----------------EALRLLL 87 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSH----------------HHHHHHH
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchh----------------HHHHHHH
Confidence 444555666677777777666543 22335566666666666653321110000 0001112
Q ss_pred hhhCCCCCCcEEEccCCCCCCC----CchhhccCCCCCEEEccCCcCCCCCCCCCCCCChhhhhccccccccccCCCCcc
Q 037249 107 LVANTLPSLVELRLSNCQLHHL----PPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSWLYRLTHFEQLSVADRPRRI 182 (420)
Q Consensus 107 ~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 182 (420)
..+..+++|++|++++|.+... .+..+..+++|++|++++|.+... .+..+.
T Consensus 88 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~-------~~~~l~----------------- 143 (386)
T 2ca6_A 88 QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQ-------AGAKIA----------------- 143 (386)
T ss_dssp HHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHH-------HHHHHH-----------------
T ss_pred HHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHH-------HHHHHH-----------------
Confidence 2345667777777777766652 223456677777777777765320 001111
Q ss_pred ccccccc---------cCCcEEeeccCcccceeEEEeecCcccccch---hhhhcCCCCCEEECCCcccccC-----Ccc
Q 037249 183 PRSMASL---------CNLRTIYLSGCVSKELEILVLQSSSISGHLT---EQIGHFKNLDTLDLGNNSIVGL-----VPL 245 (420)
Q Consensus 183 ~~~~~~~---------~~L~~L~l~~~~~~~l~~L~l~~~~~~~~~~---~~l~~~~~L~~L~l~~~~~~~~-----~~~ 245 (420)
..+..+ ++|++|++++|.+.. ..++ ..+..+++|++|++++|.+.+. .+.
T Consensus 144 -~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~------------~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~ 210 (386)
T 2ca6_A 144 -RALQELAVNKKAKNAPPLRSIICGRNRLEN------------GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLE 210 (386)
T ss_dssp -HHHHHHHHHHHHHTCCCCCEEECCSSCCTG------------GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHT
T ss_pred -HHHHHHhhhhhcccCCCCcEEECCCCCCCc------------HHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHH
Confidence 111111 445555554443310 1122 3455566666666666666521 122
Q ss_pred chhhccCCcEeecCCcccc----CccchhhhcccCccceEeecCCccceecCCCCCCccceeeecccceeeccccCcccc
Q 037249 246 SLNELSKLRILHLPDNKLN----GTLFEIHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLGLRSFYLDLFNNSFSG 321 (420)
Q Consensus 246 ~~~~~~~L~~L~l~~~~l~----~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~ 321 (420)
.+..+++|++|++++|.++ ..++. .+..+++|+.|++++|.+.......+ ..
T Consensus 211 ~l~~~~~L~~L~Ls~n~l~~~g~~~l~~-~l~~~~~L~~L~L~~n~i~~~~~~~l-----------------------~~ 266 (386)
T 2ca6_A 211 GLAYCQELKVLDLQDNTFTHLGSSALAI-ALKSWPNLRELGLNDCLLSARGAAAV-----------------------VD 266 (386)
T ss_dssp TGGGCTTCCEEECCSSCCHHHHHHHHHH-HGGGCTTCCEEECTTCCCCHHHHHHH-----------------------HH
T ss_pred HhhcCCCccEEECcCCCCCcHHHHHHHH-HHccCCCcCEEECCCCCCchhhHHHH-----------------------HH
Confidence 4555666666666666664 22222 45566666666666665442110000 00
Q ss_pred cccccccCCccEEEccCCcccc----CCcccc-cccccccEEeccCCccccccC--ccc-cccCCCceEeCCCc
Q 037249 322 SISHFCYQNLMLLTLSNNKFTG----NLPNSL-GSLTSLVSLHLHKNIFSGTIP--ISL-KNCTALMILDVGEN 387 (420)
Q Consensus 322 ~~~~~~~~~L~~L~l~~~~l~~----~~~~~~-~~~~~L~~L~l~~n~~~~~~~--~~l-~~l~~L~~L~l~~n 387 (420)
.+....+++|++|++++|.+++ .++..+ .++++|+.|++++|++.+..+ ..+ ..++.++.+++...
T Consensus 267 ~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~~~ 340 (386)
T 2ca6_A 267 AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDEL 340 (386)
T ss_dssp HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEECCC
T ss_pred HHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchhhhc
Confidence 0000113678888888888875 366665 557888888888888875552 232 23455555555443
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=3e-21 Score=170.43 Aligned_cols=189 Identities=23% Similarity=0.245 Sum_probs=148.9
Q ss_pred cccccccCCcEEeeccCcccceeEEEeecCcccccchhhhhcCCCCCEEECCCcccccCCccchhhccCCcEeecCCccc
Q 037249 184 RSMASLCNLRTIYLSGCVSKELEILVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKL 263 (420)
Q Consensus 184 ~~~~~~~~L~~L~l~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 263 (420)
.....+++|+.|+++++.+.. ...+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+
T Consensus 35 ~~~~~l~~L~~L~l~~~~i~~---------------~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l 97 (272)
T 3rfs_A 35 VTQNELNSIDQIIANNSDIKS---------------VQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQL 97 (272)
T ss_dssp ECHHHHTTCCEEECTTSCCCC---------------CTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCC
T ss_pred cccccccceeeeeeCCCCccc---------------ccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCcc
Confidence 344566777777777665432 12366788899999998888864 4677888899999998888
Q ss_pred cCccchhhhcccCccceEeecCCccceecCCCCCCccceeeecccceeeccccCcccccccccccCCccEEEccCCcccc
Q 037249 264 NGTLFEIHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLGLRSFYLDLFNNSFSGSISHFCYQNLMLLTLSNNKFTG 343 (420)
Q Consensus 264 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 343 (420)
++ ++...+..+++|++|++++|.+....+..+. .+++|++|++++|++++
T Consensus 98 ~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----------------------------~l~~L~~L~L~~n~l~~ 147 (272)
T 3rfs_A 98 QS-LPNGVFDKLTNLKELVLVENQLQSLPDGVFD-----------------------------KLTNLTYLNLAHNQLQS 147 (272)
T ss_dssp CC-CCTTTTTTCTTCCEEECTTSCCCCCCTTTTT-----------------------------TCTTCCEEECCSSCCCC
T ss_pred Cc-cChhHhcCCcCCCEEECCCCcCCccCHHHhc-----------------------------cCCCCCEEECCCCccCc
Confidence 74 4443677888888888888876643332222 24789999999999997
Q ss_pred CCcccccccccccEEeccCCccccccCccccccCCCceEeCCCcccccccchhhhhcCCCceEEEeeccccccCCCC
Q 037249 344 NLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVGENEFVGNISTWFGERFSRVVVLILRSNQFRGLLPT 420 (420)
Q Consensus 344 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~ 420 (420)
..+..+..+++|+.|++++|.+++..+..++.+++|++|++++|++++..+..+.. +++|++|++++|++++..|.
T Consensus 148 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~l~~N~~~~~~~~ 223 (272)
T 3rfs_A 148 LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDR-LTSLQYIWLHDNPWDCTCPG 223 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT-CTTCCEEECCSSCBCCCTTT
T ss_pred cCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhC-CcCCCEEEccCCCccccCcH
Confidence 77777899999999999999999777777899999999999999999777766665 99999999999999998773
No 82
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.86 E-value=1.9e-20 Score=165.11 Aligned_cols=203 Identities=24% Similarity=0.290 Sum_probs=120.6
Q ss_pred CCcEEecccCCCCCCCchhhhhccccCceeecCCCcccCCCCCCCCCCCCccEEEeecccccccccccccCCCcccEEEc
Q 037249 15 HLSYLGLSFNDFQGVQIPRFIGSIRNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENFLWLSGLSFLEQLDL 94 (420)
Q Consensus 15 ~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 94 (420)
..+.++++++.++ .+|..+. +++++|++++|.+....+.+|.++++|++|++++|.+.......+..+++|++|++
T Consensus 17 ~~~~l~~~~~~l~--~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLT--AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCS--SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCC--ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 3566777776666 3443332 46777777777766555556677777777777777666555555566666666666
Q ss_pred ccccCCCccchhhhhCCCCCCcEEEccCCCCCCCCchhhccCCCCCEEEccCCcCCCCCCCCCCCCChhhhhcccccccc
Q 037249 95 CYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSWLYRLTHFEQLS 174 (420)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 174 (420)
++|.+...+. ..+..+++|++|++++|.+..+++..+..+++|++|++++|.+.. +
T Consensus 93 ~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--------~-------------- 148 (270)
T 2o6q_A 93 TDNKLQALPI--GVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS--------L-------------- 148 (270)
T ss_dssp CSSCCCCCCT--TTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--------C--------------
T ss_pred CCCcCCcCCH--hHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCc--------c--------------
Confidence 6666655432 234556666666666666666665555666666666666665532 1
Q ss_pred ccCCCCccccccccccCCcEEeeccCcccceeEEEeecCcccccchhhhhcCCCCCEEECCCcccccCCccchhhccCCc
Q 037249 175 VADRPRRIPRSMASLCNLRTIYLSGCVSKELEILVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLR 254 (420)
Q Consensus 175 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 254 (420)
.+..+..+++|+.|++++|.+ ++..+..+..+++|+.|++++|.+....+..+..+++|+
T Consensus 149 -------~~~~~~~l~~L~~L~L~~n~l-------------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 208 (270)
T 2o6q_A 149 -------PKGVFDKLTSLKELRLYNNQL-------------KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLK 208 (270)
T ss_dssp -------CTTTTTTCTTCCEEECCSSCC-------------SCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred -------CHhHccCCcccceeEecCCcC-------------cEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCC
Confidence 112234455555555554433 223344455666667777776666665555566666677
Q ss_pred EeecCCccccC
Q 037249 255 ILHLPDNKLNG 265 (420)
Q Consensus 255 ~L~l~~~~l~~ 265 (420)
.|++++|++..
T Consensus 209 ~L~l~~N~~~c 219 (270)
T 2o6q_A 209 MLQLQENPWDC 219 (270)
T ss_dssp EEECCSSCBCC
T ss_pred EEEecCCCeeC
Confidence 77777666543
No 83
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.86 E-value=9.4e-21 Score=168.56 Aligned_cols=201 Identities=20% Similarity=0.159 Sum_probs=123.5
Q ss_pred hhccccccccccCCC-CccccccccccCCcEEeeccCcccceeEEEeecCcccccchhhhhcCCCCCEEECCCcccccCC
Q 037249 165 YRLTHFEQLSVADRP-RRIPRSMASLCNLRTIYLSGCVSKELEILVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLV 243 (420)
Q Consensus 165 ~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 243 (420)
..+++++.+++.++. ..+|..+. ++++.|++++ |.+++..+..+..+++|+.|++++|.+....
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~-------------N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 71 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSE-------------NLLYTFSLATLMPYTRLTQLNLDRAELTKLQ 71 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTT-------------SCCSEEEGGGGTTCTTCCEEECTTSCCCEEE
T ss_pred cccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCC-------------CcCCccCHHHhhcCCCCCEEECCCCccCccc
Confidence 344556666665554 44444332 3444444444 4455555667777888888888888877653
Q ss_pred ccchhhccCCcEeecCCccccCccchhhhcccCccceEeecCCccceecCCCCCCccceeeecccceeeccccCcccccc
Q 037249 244 PLSLNELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLGLRSFYLDLFNNSFSGSI 323 (420)
Q Consensus 244 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~ 323 (420)
+ .+.+++|++|++++|.++ .++. .+..+++|+.|++++|++....+..+...
T Consensus 72 ~--~~~l~~L~~L~Ls~N~l~-~l~~-~~~~l~~L~~L~l~~N~l~~l~~~~~~~l------------------------ 123 (290)
T 1p9a_G 72 V--DGTLPVLGTLDLSHNQLQ-SLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGL------------------------ 123 (290)
T ss_dssp C--CSCCTTCCEEECCSSCCS-SCCC-CTTTCTTCCEEECCSSCCCCCCSSTTTTC------------------------
T ss_pred C--CCCCCcCCEEECCCCcCC-cCch-hhccCCCCCEEECCCCcCcccCHHHHcCC------------------------
Confidence 2 256778888888888876 4554 56677788888888777765444444333
Q ss_pred cccccCCccEEEccCCccccCCcccccccccccEEeccCCccccccCccccccCCCceEeCCCcccccccchhhhhcCCC
Q 037249 324 SHFCYQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVGENEFVGNISTWFGERFSR 403 (420)
Q Consensus 324 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~~ 403 (420)
++|++|++++|++++..+..|..+++|+.|++++|+++...+..+..+++|+.|++++|+++ .+|..+.. +++
T Consensus 124 -----~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~-~~~ 196 (290)
T 1p9a_G 124 -----GELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFG-SHL 196 (290)
T ss_dssp -----TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTT-TCC
T ss_pred -----CCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcc-ccc
Confidence 45666666666666555555566666666666666666333344555666666666666665 45555554 556
Q ss_pred ceEEEeeccccc
Q 037249 404 VVVLILRSNQFR 415 (420)
Q Consensus 404 L~~L~l~~~~~~ 415 (420)
|+++++++|++.
T Consensus 197 L~~l~L~~Np~~ 208 (290)
T 1p9a_G 197 LPFAFLHGNPWL 208 (290)
T ss_dssp CSEEECCSCCBC
T ss_pred CCeEEeCCCCcc
Confidence 666666666653
No 84
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.85 E-value=1.1e-21 Score=180.56 Aligned_cols=71 Identities=18% Similarity=0.200 Sum_probs=55.7
Q ss_pred CCccEEEccCCccccCCc----ccccccccccEEeccCCcccc-------ccCccccccCCCceEeCCCcccccccchhh
Q 037249 329 QNLMLLTLSNNKFTGNLP----NSLGSLTSLVSLHLHKNIFSG-------TIPISLKNCTALMILDVGENEFVGNISTWF 397 (420)
Q Consensus 329 ~~L~~L~l~~~~l~~~~~----~~~~~~~~L~~L~l~~n~~~~-------~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l 397 (420)
++|++|++++|++++..+ ..+..+++|+.|++++|.+.. .++..+..+++|++||+++|++.+..+..+
T Consensus 225 ~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~ 304 (362)
T 3goz_A 225 NHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPI 304 (362)
T ss_dssp TTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHH
T ss_pred CCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHH
Confidence 589999999999986544 445778999999999998442 334467788999999999999988766554
Q ss_pred hh
Q 037249 398 GE 399 (420)
Q Consensus 398 ~~ 399 (420)
.+
T Consensus 305 ~~ 306 (362)
T 3goz_A 305 SN 306 (362)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 85
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.85 E-value=2.6e-20 Score=165.73 Aligned_cols=205 Identities=20% Similarity=0.206 Sum_probs=139.4
Q ss_pred ccCCCCCCcEEecccCCCCCCCchhhhhccccCceeecCCCcccCCCCCCCCCCCCccEEEeecccccccccccccCCCc
Q 037249 9 SLLDLNHLSYLGLSFNDFQGVQIPRFIGSIRNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENFLWLSGLSF 88 (420)
Q Consensus 9 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 88 (420)
.+.++++++.++++++.++ .+|..+. +++++|++++|.+....+..|..+++|++|++++|.+...... ..+++
T Consensus 5 ~~~~l~~l~~l~~~~~~l~--~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~ 78 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLT--ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPV 78 (290)
T ss_dssp EEECSTTCCEEECTTSCCS--SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTT
T ss_pred cccccCCccEEECCCCCCC--cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCc
Confidence 3677788888888888776 3444443 6788888888887766666777888888888888877655442 56777
Q ss_pred ccEEEcccccCCCccchhhhhCCCCCCcEEEccCCCCCCCCchhhccCCCCCEEEccCCcCCCCCCCCCCCCChhhhhcc
Q 037249 89 LEQLDLCYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSWLYRLT 168 (420)
Q Consensus 89 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~ 168 (420)
|+.|++++|.+...+. .+..+++|++|++++|+++.+++..+..+++|++|++++|.++. +
T Consensus 79 L~~L~Ls~N~l~~l~~---~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~--------~-------- 139 (290)
T 1p9a_G 79 LGTLDLSHNQLQSLPL---LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT--------L-------- 139 (290)
T ss_dssp CCEEECCSSCCSSCCC---CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC--------C--------
T ss_pred CCEEECCCCcCCcCch---hhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCc--------c--------
Confidence 7788887777776553 44567777777777777777776667777777777777776642 1
Q ss_pred ccccccccCCCCccccccccccCCcEEeeccCcccceeEEEeecCcccccchhhhhcCCCCCEEECCCcccccCCccchh
Q 037249 169 HFEQLSVADRPRRIPRSMASLCNLRTIYLSGCVSKELEILVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLN 248 (420)
Q Consensus 169 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 248 (420)
.+..+..+++|+.|++++|.+ +...+..+..+++|+.|++++|++... |..+.
T Consensus 140 -------------~~~~~~~l~~L~~L~L~~N~l-------------~~l~~~~~~~l~~L~~L~L~~N~l~~i-p~~~~ 192 (290)
T 1p9a_G 140 -------------PPGLLTPTPKLEKLSLANNNL-------------TELPAGLLNGLENLDTLLLQENSLYTI-PKGFF 192 (290)
T ss_dssp -------------CTTTTTTCTTCCEEECTTSCC-------------SCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTT
T ss_pred -------------ChhhcccccCCCEEECCCCcC-------------CccCHHHhcCcCCCCEEECCCCcCCcc-Chhhc
Confidence 122344556666666665543 333444556677778888888777754 55566
Q ss_pred hccCCcEeecCCccccC
Q 037249 249 ELSKLRILHLPDNKLNG 265 (420)
Q Consensus 249 ~~~~L~~L~l~~~~l~~ 265 (420)
.+++|+.|++++|++..
T Consensus 193 ~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 193 GSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp TTCCCSEEECCSCCBCC
T ss_pred ccccCCeEEeCCCCccC
Confidence 66777777777777653
No 86
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=4.6e-20 Score=165.74 Aligned_cols=194 Identities=19% Similarity=0.272 Sum_probs=129.6
Q ss_pred hhhccccccccccCCC-CccccccccccCCcEEeeccCcccceeEEEeecCcccccchhhhhcCCCCCEEECCCcccccC
Q 037249 164 LYRLTHFEQLSVADRP-RRIPRSMASLCNLRTIYLSGCVSKELEILVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVGL 242 (420)
Q Consensus 164 l~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 242 (420)
...+++|+.|++.++. ..++ .+..+++|+.|++++|.+. +..+ +..+++|+.|++++|.+.+.
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~-------------~~~~--~~~l~~L~~L~L~~n~l~~~ 100 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQIT-------------DLAP--LKNLTKITELELSGNPLKNV 100 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCC-------------CCGG--GTTCCSCCEEECCSCCCSCC
T ss_pred HHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCC-------------CChh--HccCCCCCEEEccCCcCCCc
Confidence 3445666666666655 2232 4555556666655554432 2222 55666777777777766654
Q ss_pred CccchhhccCCcEeecCCccccCccchhhhcccCccceEeecCCccceecCCCCCCccceeeecccceeeccccCccccc
Q 037249 243 VPLSLNELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLGLRSFYLDLFNNSFSGS 322 (420)
Q Consensus 243 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~ 322 (420)
..+..+++|++|++++|.+++ ++ .+..+++|+.|++++|.+. +.
T Consensus 101 --~~~~~l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~l~~n~l~-------------------------------~~ 144 (308)
T 1h6u_A 101 --SAIAGLQSIKTLDLTSTQITD-VT--PLAGLSNLQVLYLDLNQIT-------------------------------NI 144 (308)
T ss_dssp --GGGTTCTTCCEEECTTSCCCC-CG--GGTTCTTCCEEECCSSCCC-------------------------------CC
T ss_pred --hhhcCCCCCCEEECCCCCCCC-ch--hhcCCCCCCEEECCCCccC-------------------------------cC
Confidence 246666677777777776653 22 2566666766666666554 33
Q ss_pred ccccccCCccEEEccCCccccCCcccccccccccEEeccCCccccccCccccccCCCceEeCCCcccccccchhhhhcCC
Q 037249 323 ISHFCYQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVGENEFVGNISTWFGERFS 402 (420)
Q Consensus 323 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~ 402 (420)
.+...+++|++|++++|++++ ++. +..+++|+.|++++|.+.+..+ +..+++|++|++++|++.+..+ +.. ++
T Consensus 145 ~~l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~-l~ 217 (308)
T 1h6u_A 145 SPLAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LAN-TS 217 (308)
T ss_dssp GGGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTT-CT
T ss_pred ccccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccC-CC
Confidence 333345789999999999884 333 8888999999999999884333 7888999999999999876553 554 89
Q ss_pred CceEEEeecccccc
Q 037249 403 RVVVLILRSNQFRG 416 (420)
Q Consensus 403 ~L~~L~l~~~~~~~ 416 (420)
+|++|++++|++++
T Consensus 218 ~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 218 NLFIVTLTNQTITN 231 (308)
T ss_dssp TCCEEEEEEEEEEC
T ss_pred CCCEEEccCCeeec
Confidence 99999999998865
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=9.3e-21 Score=170.66 Aligned_cols=198 Identities=20% Similarity=0.130 Sum_probs=143.7
Q ss_pred eeEEEeecCcccccchhhh--hcCCCCCEEECCCcccccCCc----cchhhccCCcEeecCCccccCccchhhhcccCcc
Q 037249 205 LEILVLQSSSISGHLTEQI--GHFKNLDTLDLGNNSIVGLVP----LSLNELSKLRILHLPDNKLNGTLFEIHFVNLTKL 278 (420)
Q Consensus 205 l~~L~l~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L 278 (420)
++.|++++|.+.+..+..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+++..+. .+..+++|
T Consensus 93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L 171 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCE-QVRAFPAL 171 (310)
T ss_dssp CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTT-SCCCCTTC
T ss_pred eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHH-HhccCCCC
Confidence 5555555666666666665 777888888888888876433 2234577888888888888643333 67788888
Q ss_pred ceEeecCCcccee---c-CCCCCCccceeeecccceeeccccCcccccccc-----cccCCccEEEccCCccccCCcccc
Q 037249 279 SVSSVNENNLTLK---V-NHDWVPPFQLVQLGLRSFYLDLFNNSFSGSISH-----FCYQNLMLLTLSNNKFTGNLPNSL 349 (420)
Q Consensus 279 ~~l~l~~~~~~~~---~-~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~-----~~~~~L~~L~l~~~~l~~~~~~~~ 349 (420)
++|++++|++... . ...+.....++ ++++++|.++..... ..+++|++|++++|++++..|..+
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~-------~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~ 244 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQ-------NLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSA 244 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCC-------SCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCC
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCC-------EEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhH
Confidence 8888888875431 1 12223334444 566777777643331 245899999999999997767777
Q ss_pred ccc---ccccEEeccCCccccccCccccccCCCceEeCCCcccccccchhhhhcCCCceEEEeecccccc
Q 037249 350 GSL---TSLVSLHLHKNIFSGTIPISLKNCTALMILDVGENEFVGNISTWFGERFSRVVVLILRSNQFRG 416 (420)
Q Consensus 350 ~~~---~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~~L~~L~l~~~~~~~ 416 (420)
..+ ++|++|++++|+++ .+|..+. ++|++|++++|++++. |. +. .+++|++|++++|+++.
T Consensus 245 ~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~-~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 245 PRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PD-ELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp SSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TT-SCCCCSCEECSSTTTSC
T ss_pred HhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hh-hCCCccEEECcCCCCCC
Confidence 666 79999999999999 7787774 8999999999999854 33 34 48999999999999976
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.84 E-value=4.8e-20 Score=160.70 Aligned_cols=145 Identities=21% Similarity=0.206 Sum_probs=75.8
Q ss_pred cchhhhhcCCCCCEEECCCcccccCCccchhhccCCcEeecCCccccCccchhhhcccCccceEeecCCccceecCCCCC
Q 037249 218 HLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLKVNHDWV 297 (420)
Q Consensus 218 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ 297 (420)
..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.++ .++...+..+++|+.|++++|.+.......+.
T Consensus 50 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 128 (251)
T 3m19_A 50 LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFD 128 (251)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccc-ccChhHhcccCCCCEEEcCCCcCCCcChhHhc
Confidence 33444445555555555555555544444455555555555555554 22222444455555555544444322211111
Q ss_pred CccceeeecccceeeccccCcccccccccccCCccEEEccCCccccCCcccccccccccEEeccCCccccccCccccccC
Q 037249 298 PPFQLVQLGLRSFYLDLFNNSFSGSISHFCYQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCT 377 (420)
Q Consensus 298 ~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~ 377 (420)
.+++|++|++++|++++..+..|..+++|+.|++++|.+.+..+..+..++
T Consensus 129 -----------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 179 (251)
T 3m19_A 129 -----------------------------RLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLG 179 (251)
T ss_dssp -----------------------------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred -----------------------------cCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCC
Confidence 134566666666666644444566666666666666666644455566666
Q ss_pred CCceEeCCCcccccc
Q 037249 378 ALMILDVGENEFVGN 392 (420)
Q Consensus 378 ~L~~L~l~~n~~~~~ 392 (420)
+|+.|++++|++...
T Consensus 180 ~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 180 KLQTITLFGNQFDCS 194 (251)
T ss_dssp TCCEEECCSCCBCTT
T ss_pred CCCEEEeeCCceeCC
Confidence 666666666666544
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=1e-20 Score=172.59 Aligned_cols=250 Identities=20% Similarity=0.208 Sum_probs=160.8
Q ss_pred CCcEEecccCCCCCCCchhhhhcc--ccCceeecCCCcccCCCCCCCCCCCCccEEEeeccccccc-ccccccCCCcccE
Q 037249 15 HLSYLGLSFNDFQGVQIPRFIGSI--RNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVE-NFLWLSGLSFLEQ 91 (420)
Q Consensus 15 ~L~~L~l~~~~i~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~ 91 (420)
.++.++++++.+. +..+..+ +++++++++++.+.+..+. +..+++|++|++++|.+... ....+..+++|++
T Consensus 48 ~~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 48 LWQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TSSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hheeeccccccCC----HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 4778899888765 3455666 8899999999988765554 55788999999999887654 4445678888999
Q ss_pred EEcccccCCCccchhhhhCCCCCCcEEEccCC-CCCCC-CchhhccCCCCCEEEccCC-cCCCCCCCCCCCCChhhhhcc
Q 037249 92 LDLCYVNLSKASDWLLVANTLPSLVELRLSNC-QLHHL-PPLTISNFSSLTVLDLSFS-QFDNSLIPGWGPIPSWLYRLT 168 (420)
Q Consensus 92 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~l~~~~ 168 (420)
|++++|.+... ....+..+++|++|++++| .+++. .+..+..+++|++|++++| .+++ ..++..+..++
T Consensus 123 L~L~~~~l~~~--~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~------~~~~~~~~~l~ 194 (336)
T 2ast_B 123 LSLEGLRLSDP--IVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE------KHVQVAVAHVS 194 (336)
T ss_dssp EECTTCBCCHH--HHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCH------HHHHHHHHHSC
T ss_pred EeCcCcccCHH--HHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcCh------HHHHHHHHhcc
Confidence 99988876533 2345667888999999888 56542 2334677888888888888 6643 11344566666
Q ss_pred -ccccccccCCC-----CccccccccccCCcEEeeccCcccceeEEEeecCcccccchhhhhcCCCCCEEECCCcc-ccc
Q 037249 169 -HFEQLSVADRP-----RRIPRSMASLCNLRTIYLSGCVSKELEILVLQSSSISGHLTEQIGHFKNLDTLDLGNNS-IVG 241 (420)
Q Consensus 169 -~L~~L~l~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~ 241 (420)
+|+.|+++++. ..++..+..+++|+.|++++|.. +++..+..+..+++|+.|++++|. +.+
T Consensus 195 ~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~------------l~~~~~~~l~~l~~L~~L~l~~~~~~~~ 262 (336)
T 2ast_B 195 ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM------------LKNDCFQEFFQLNYLQHLSLSRCYDIIP 262 (336)
T ss_dssp TTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTT------------CCGGGGGGGGGCTTCCEEECTTCTTCCG
T ss_pred cCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCc------------CCHHHHHHHhCCCCCCEeeCCCCCCCCH
Confidence 77777777663 23344555666666666665541 233444556667777777777774 222
Q ss_pred CCccchhhccCCcEeecCCccccCccchhhhcccCccceEeecCCccceecC
Q 037249 242 LVPLSLNELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLKVN 293 (420)
Q Consensus 242 ~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~ 293 (420)
.....+..+++|++|++++| +++.... .+. ..+..|++++|.++...+
T Consensus 263 ~~~~~l~~~~~L~~L~l~~~-i~~~~~~-~l~--~~l~~L~l~~n~l~~~~~ 310 (336)
T 2ast_B 263 ETLLELGEIPTLKTLQVFGI-VPDGTLQ-LLK--EALPHLQINCSHFTTIAR 310 (336)
T ss_dssp GGGGGGGGCTTCCEEECTTS-SCTTCHH-HHH--HHSTTSEESCCCSCCTTC
T ss_pred HHHHHHhcCCCCCEEeccCc-cCHHHHH-HHH--hhCcceEEecccCccccC
Confidence 22224566777777777777 4432221 111 224444566666554433
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.83 E-value=6.4e-20 Score=158.75 Aligned_cols=197 Identities=19% Similarity=0.223 Sum_probs=113.4
Q ss_pred ccCceeecCCCcccCCCCCCCCCCCCccEEEeeccc-ccccccccccCCCcccEEEccc-ccCCCccchhhhhCCCCCCc
Q 037249 39 RNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNY-LYVENFLWLSGLSFLEQLDLCY-VNLSKASDWLLVANTLPSLV 116 (420)
Q Consensus 39 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~~~L~ 116 (420)
+++++|++++|+++...+.+|..+++|++|++++|. +......++.++++|++|++++ |.+...+. ..+..+++|+
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~--~~f~~l~~L~ 108 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP--DALKELPLLK 108 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT--TSEECCTTCC
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH--HHhCCCCCCC
Confidence 367777777777665555566677777777777775 6666665666777777777776 66655432 2345667777
Q ss_pred EEEccCCCCCCCCchhhccCCCCC---EEEccCC-cCCCCCCCCCCCCChhhhhccccccccccCCCCccccccccccCC
Q 037249 117 ELRLSNCQLHHLPPLTISNFSSLT---VLDLSFS-QFDNSLIPGWGPIPSWLYRLTHFEQLSVADRPRRIPRSMASLCNL 192 (420)
Q Consensus 117 ~L~l~~~~~~~~~~~~l~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L 192 (420)
+|++++|.+..++. +..+++|+ +|++++| .++. ++ +..+..+++|
T Consensus 109 ~L~l~~n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~--------i~---------------------~~~~~~l~~L 157 (239)
T 2xwt_C 109 FLGIFNTGLKMFPD--LTKVYSTDIFFILEITDNPYMTS--------IP---------------------VNAFQGLCNE 157 (239)
T ss_dssp EEEEEEECCCSCCC--CTTCCBCCSEEEEEEESCTTCCE--------EC---------------------TTTTTTTBSS
T ss_pred EEeCCCCCCccccc--cccccccccccEEECCCCcchhh--------cC---------------------cccccchhcc
Confidence 77777777666553 55666666 7777776 5532 11 1223444455
Q ss_pred c-EEeeccCcccceeEEEeecCcccccchhhhhcCCCCCEEECCCcc-cccCCccchhhc-cCCcEeecCCccccCccch
Q 037249 193 R-TIYLSGCVSKELEILVLQSSSISGHLTEQIGHFKNLDTLDLGNNS-IVGLVPLSLNEL-SKLRILHLPDNKLNGTLFE 269 (420)
Q Consensus 193 ~-~L~l~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~-~~L~~L~l~~~~l~~~~~~ 269 (420)
+ .|++++|.+.. ..+..+.. ++|+.|++++|+ +....+..+..+ ++|+.|++++|.++ .++.
T Consensus 158 ~~~L~l~~n~l~~-------------i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~ 222 (239)
T 2xwt_C 158 TLTLKLYNNGFTS-------------VQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPS 222 (239)
T ss_dssp EEEEECCSCCCCE-------------ECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCC
T ss_pred eeEEEcCCCCCcc-------------cCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCCh
Confidence 5 55554443321 11122222 456666666663 655545556666 66666666666665 3333
Q ss_pred hhhcccCccceEeecCC
Q 037249 270 IHFVNLTKLSVSSVNEN 286 (420)
Q Consensus 270 ~~~~~~~~L~~l~l~~~ 286 (420)
. .+++|+.|++.++
T Consensus 223 ~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 223 K---GLEHLKELIARNT 236 (239)
T ss_dssp T---TCTTCSEEECTTC
T ss_pred h---HhccCceeeccCc
Confidence 1 4556666665554
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.83 E-value=2.1e-20 Score=168.40 Aligned_cols=234 Identities=19% Similarity=0.185 Sum_probs=155.9
Q ss_pred cccEEEcccccCCCcc--chhhhhCCCCCCcEEEccCCCCCCCCchhh--ccCCCCCEEEccCCcCCCCCCCCCCCCChh
Q 037249 88 FLEQLDLCYVNLSKAS--DWLLVANTLPSLVELRLSNCQLHHLPPLTI--SNFSSLTVLDLSFSQFDNSLIPGWGPIPSW 163 (420)
Q Consensus 88 ~L~~L~l~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 163 (420)
.++.+.+.++.+.... ... ....+++|++|++++|.+.+..+..+ ..+++|++|++++|.+... .+ .
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~-------~~-~ 135 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGAL-RVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATG-------RS-W 135 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHH-HHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSST-------TS-S
T ss_pred ceeEEEEeCCcCCHHHHHHHH-HhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccch-------hh-h
Confidence 3555555555443221 111 11234568888888888776666555 7778888888888877420 00 0
Q ss_pred hhhccccccccccCCCCccccccccccCCcEEeeccCcccceeEEEeecCcccccchhhhhcCCCCCEEECCCcccccC-
Q 037249 164 LYRLTHFEQLSVADRPRRIPRSMASLCNLRTIYLSGCVSKELEILVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVGL- 242 (420)
Q Consensus 164 l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~- 242 (420)
+ ....+..+++|++|++++| .+.+..+..++.+++|++|++++|++.+.
T Consensus 136 ~-----------------~~~~~~~~~~L~~L~Ls~n-------------~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 185 (310)
T 4glp_A 136 L-----------------AELQQWLKPGLKVLSIAQA-------------HSPAFSCEQVRAFPALTSLDLSDNPGLGER 185 (310)
T ss_dssp H-----------------HHHHTTBCSCCCEEEEECC-------------SSCCCCTTSCCCCTTCCEEECCSCTTCHHH
T ss_pred h-----------------HHHHhhhccCCCEEEeeCC-------------CcchhhHHHhccCCCCCEEECCCCCCccch
Confidence 0 0012234556666666554 44556667778888999999999986542
Q ss_pred --C-ccchhhccCCcEeecCCccccCccch---hhhcccCccceEeecCCccceecCCCCCCccceeeecccceeecccc
Q 037249 243 --V-PLSLNELSKLRILHLPDNKLNGTLFE---IHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLGLRSFYLDLFN 316 (420)
Q Consensus 243 --~-~~~~~~~~~L~~L~l~~~~l~~~~~~---~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~ 316 (420)
. +..++.+++|++|++++|.++ .++. ..+..+++|+.|++++|.+....+..+....
T Consensus 186 ~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~---------------- 248 (310)
T 4glp_A 186 GLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM---------------- 248 (310)
T ss_dssp HHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC----------------
T ss_pred hhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc----------------
Confidence 1 233467889999999999986 3332 1356789999999999887754333222111
Q ss_pred CcccccccccccCCccEEEccCCccccCCcccccccccccEEeccCCccccccCccccccCCCceEeCCCcccccc
Q 037249 317 NSFSGSISHFCYQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVGENEFVGN 392 (420)
Q Consensus 317 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 392 (420)
.+++|++|++++|+++ .+|..+. ++|+.|++++|+++ .+|. +..+++|+.|++++|++++.
T Consensus 249 ----------~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~-~~~~-~~~l~~L~~L~L~~N~l~~~ 309 (310)
T 4glp_A 249 ----------WSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLN-RAPQ-PDELPEVDNLTLDGNPFLVP 309 (310)
T ss_dssp ----------CCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCC-SCCC-TTSCCCCSCEECSSTTTSCC
T ss_pred ----------CcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCC-CCch-hhhCCCccEEECcCCCCCCC
Confidence 1258999999999999 6676664 89999999999998 4443 67889999999999999764
No 92
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.82 E-value=2.3e-19 Score=161.18 Aligned_cols=195 Identities=25% Similarity=0.350 Sum_probs=119.0
Q ss_pred hhccccCceeecCCCcccCCCCCCCCCCCCccEEEeecccccccccccccCCCcccEEEcccccCCCccchhhhhCCCCC
Q 037249 35 IGSIRNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENFLWLSGLSFLEQLDLCYVNLSKASDWLLVANTLPS 114 (420)
Q Consensus 35 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 114 (420)
...+++|++|++++|.+.. ++ .+..+++|++|++++|.+..... +..+++|++|++++|.+...+ .+..+++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~----~~~~l~~ 108 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS----AIAGLQS 108 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG----GGTTCTT
T ss_pred HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch----hhcCCCC
Confidence 3456777777777777653 33 46677777777777777665544 667777777777777766553 3556777
Q ss_pred CcEEEccCCCCCCCCchhhccCCCCCEEEccCCcCCCCCCCCCCCCChhhhhccccccccccCCCCccccccccccCCcE
Q 037249 115 LVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSWLYRLTHFEQLSVADRPRRIPRSMASLCNLRT 194 (420)
Q Consensus 115 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~ 194 (420)
|++|++++|++..++. +..+++|++|++++|.++. ++. +..+++|+.
T Consensus 109 L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~--------~~~-----------------------l~~l~~L~~ 155 (308)
T 1h6u_A 109 IKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITN--------ISP-----------------------LAGLTNLQY 155 (308)
T ss_dssp CCEEECTTSCCCCCGG--GTTCTTCCEEECCSSCCCC--------CGG-----------------------GGGCTTCCE
T ss_pred CCEEECCCCCCCCchh--hcCCCCCCEEECCCCccCc--------Ccc-----------------------ccCCCCccE
Confidence 7777777777776543 6677777777777776642 111 334445555
Q ss_pred EeeccCcccceeEEEeecCcccccchhhhhcCCCCCEEECCCcccccCCccchhhccCCcEeecCCccccCccchhhhcc
Q 037249 195 IYLSGCVSKELEILVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNGTLFEIHFVN 274 (420)
Q Consensus 195 L~l~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~ 274 (420)
|++++|.+. +..+ +..+++|+.|++++|.+.+..+ +..+++|++|++++|.+++.. .+..
T Consensus 156 L~l~~n~l~-------------~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~---~l~~ 215 (308)
T 1h6u_A 156 LSIGNAQVS-------------DLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS---PLAN 215 (308)
T ss_dssp EECCSSCCC-------------CCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG---GGTT
T ss_pred EEccCCcCC-------------CChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc---cccC
Confidence 555544332 1111 4555666666666666665422 555666666666666665332 2556
Q ss_pred cCccceEeecCCccce
Q 037249 275 LTKLSVSSVNENNLTL 290 (420)
Q Consensus 275 ~~~L~~l~l~~~~~~~ 290 (420)
+++|+.+++++|++..
T Consensus 216 l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 216 TSNLFIVTLTNQTITN 231 (308)
T ss_dssp CTTCCEEEEEEEEEEC
T ss_pred CCCCCEEEccCCeeec
Confidence 6666666666666543
No 93
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.82 E-value=5.5e-20 Score=159.16 Aligned_cols=191 Identities=16% Similarity=0.159 Sum_probs=118.2
Q ss_pred ecCcccccchhhhhcCCCCCEEECCCcc-cccCCccchhhccCCcEeecCC-ccccCccchhhhcccCccceEeecCCcc
Q 037249 211 QSSSISGHLTEQIGHFKNLDTLDLGNNS-IVGLVPLSLNELSKLRILHLPD-NKLNGTLFEIHFVNLTKLSVSSVNENNL 288 (420)
Q Consensus 211 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~-~~l~~~~~~~~~~~~~~L~~l~l~~~~~ 288 (420)
++|.+++..+..+..+++|+.|++++|+ +....+..+..+++|++|++++ |.++ .++...+.++++|+.|++++|.+
T Consensus 39 ~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~~L~l~~n~l 117 (239)
T 2xwt_C 39 IETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKFLGIFNTGL 117 (239)
T ss_dssp ESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCCEEEEEEECC
T ss_pred eCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCCEEeCCCCCC
Confidence 3334444444455556666666666664 5554444555566666666665 5555 33333555666666666666655
Q ss_pred ceecCCCCCCccceeeecccceeeccccC-ccccccccc--ccCCcc-EEEccCCccccCCcccccccccccEEeccCCc
Q 037249 289 TLKVNHDWVPPFQLVQLGLRSFYLDLFNN-SFSGSISHF--CYQNLM-LLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNI 364 (420)
Q Consensus 289 ~~~~~~~~~~~~~~~~l~~~~~~l~l~~~-~~~~~~~~~--~~~~L~-~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~ 364 (420)
..... +.....++.+. .+++++| .+.+..+.. .+++|+ +|++++|+++...+..+.. ++|++|++++|+
T Consensus 118 ~~lp~--~~~l~~L~~L~----~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~ 190 (239)
T 2xwt_C 118 KMFPD--LTKVYSTDIFF----ILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNK 190 (239)
T ss_dssp CSCCC--CTTCCBCCSEE----EEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCT
T ss_pred ccccc--ccccccccccc----EEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCC
Confidence 54222 33333333211 4455555 555444422 457899 9999999988434444554 899999999995
Q ss_pred -cccccCcccccc-CCCceEeCCCcccccccchhhhhcCCCceEEEeeccc
Q 037249 365 -FSGTIPISLKNC-TALMILDVGENEFVGNISTWFGERFSRVVVLILRSNQ 413 (420)
Q Consensus 365 -~~~~~~~~l~~l-~~L~~L~l~~n~~~~~~~~~l~~~~~~L~~L~l~~~~ 413 (420)
++...+..+..+ ++|++|++++|+++. +|.. .+++|+.|+++++.
T Consensus 191 ~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 191 YLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp TCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT---TCTTCSEEECTTC-
T ss_pred CcccCCHHHhhccccCCcEEECCCCcccc-CChh---HhccCceeeccCcc
Confidence 885556778888 999999999999874 4433 37889999988873
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.81 E-value=3.1e-19 Score=155.55 Aligned_cols=160 Identities=23% Similarity=0.242 Sum_probs=137.3
Q ss_pred CCCCEEECCCcccccCCccchhhccCCcEeecCCccccCccchhhhcccCccceEeecCCccceecCCCCCCccceeeec
Q 037249 227 KNLDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLG 306 (420)
Q Consensus 227 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~ 306 (420)
+.++.|++++|.+.+..+..+..+++|++|++++|.+++.. ...+..+++|+.|++++|.+.......+.
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--------- 104 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS-AGVFDDLTELGTLGLANNQLASLPLGVFD--------- 104 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCCCCCCTTTTT---------
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccC-HhHhccCCcCCEEECCCCcccccChhHhc---------
Confidence 57999999999999988888999999999999999998544 44788999999999999988754433322
Q ss_pred ccceeeccccCcccccccccccCCccEEEccCCccccCCcccccccccccEEeccCCccccccCccccccCCCceEeCCC
Q 037249 307 LRSFYLDLFNNSFSGSISHFCYQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVGE 386 (420)
Q Consensus 307 ~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 386 (420)
.+++|++|++++|++++..+..|..+++|++|++++|.+.+..+..++.+++|++|++++
T Consensus 105 --------------------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 164 (251)
T 3m19_A 105 --------------------HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLST 164 (251)
T ss_dssp --------------------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred --------------------ccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCC
Confidence 236899999999999977777789999999999999999966666899999999999999
Q ss_pred cccccccchhhhhcCCCceEEEeeccccccC
Q 037249 387 NEFVGNISTWFGERFSRVVVLILRSNQFRGL 417 (420)
Q Consensus 387 n~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~ 417 (420)
|++++..+..+.. +++|++|++++|+++..
T Consensus 165 N~l~~~~~~~~~~-l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 165 NQLQSVPHGAFDR-LGKLQTITLFGNQFDCS 194 (251)
T ss_dssp SCCSCCCTTTTTT-CTTCCEEECCSCCBCTT
T ss_pred CcCCccCHHHHhC-CCCCCEEEeeCCceeCC
Confidence 9998766666665 99999999999999876
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.77 E-value=1.2e-18 Score=147.34 Aligned_cols=155 Identities=25% Similarity=0.229 Sum_probs=72.6
Q ss_pred CCCCEEECCCcccccCCccchhhccCCcEeecCCccccCccchhhhcccCccceEeecCCccceecCCCCCCccceeeec
Q 037249 227 KNLDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLG 306 (420)
Q Consensus 227 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~ 306 (420)
++++.|++++|.+.+..+..+..+++|++|++++|.++ .++...+..+++|++|++++|.+.......+..
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-------- 98 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDK-------- 98 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT--------
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCCcCCccCHhHhcC--------
Confidence 34555555555555544444555555555555555554 233324455555555555555544322221111
Q ss_pred ccceeeccccCcccccccccccCCccEEEccCCccccCCcccccccccccEEeccCCccccccCccccccCCCceEeCCC
Q 037249 307 LRSFYLDLFNNSFSGSISHFCYQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVGE 386 (420)
Q Consensus 307 ~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 386 (420)
+++|++|++++|++++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++
T Consensus 99 ---------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 157 (208)
T 2o6s_A 99 ---------------------LTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHD 157 (208)
T ss_dssp ---------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred ---------------------ccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecC
Confidence 23444555555544433333344445555555555544433333344445555555555
Q ss_pred cccccccchhhhhcCCCceEEEeeccccccCCC
Q 037249 387 NEFVGNISTWFGERFSRVVVLILRSNQFRGLLP 419 (420)
Q Consensus 387 n~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~ 419 (420)
|++.+ .++.|+.|+++.|.++|.||
T Consensus 158 N~~~~--------~~~~l~~L~~~~n~~~g~ip 182 (208)
T 2o6s_A 158 NPWDC--------TCPGIRYLSEWINKHSGVVR 182 (208)
T ss_dssp CCBCC--------CTTTTHHHHHHHHHCTTTBB
T ss_pred CCeec--------CCCCHHHHHHHHHhCCceee
Confidence 54432 13344444444444444444
No 96
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.75 E-value=1.2e-17 Score=142.23 Aligned_cols=135 Identities=23% Similarity=0.236 Sum_probs=78.3
Q ss_pred CCCEEECCCcccccCCc-cchhhccCCcEeecCCccccCccchhhhcccCccceEeecCCccceecCCCCCCccceeeec
Q 037249 228 NLDTLDLGNNSIVGLVP-LSLNELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLG 306 (420)
Q Consensus 228 ~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~ 306 (420)
.++.|++++|.+....+ ..+..+++|++|++++|.++ .++...+..+++|+.|++++|.+....+..+.
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--------- 102 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLENVQHKMFK--------- 102 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCGGGGT---------
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC-EECHHHhCCCCCCCEEECCCCccCccCHhHhc---------
Confidence 45666666666665532 33556666666666666665 23333455666666665555554422211111
Q ss_pred ccceeeccccCcccccccccccCCccEEEccCCccccCCcccccccccccEEeccCCccccccCccccccCCCceEeCCC
Q 037249 307 LRSFYLDLFNNSFSGSISHFCYQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVGE 386 (420)
Q Consensus 307 ~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 386 (420)
.+++|++|++++|++++..+..|..+++|+.|++++|.+++..|..+..+++|++|++++
T Consensus 103 --------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 103 --------------------GLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLA 162 (220)
T ss_dssp --------------------TCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred --------------------CCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecC
Confidence 235666666666666655566666666666666666666655566666666666666666
Q ss_pred cccccc
Q 037249 387 NEFVGN 392 (420)
Q Consensus 387 n~~~~~ 392 (420)
|++...
T Consensus 163 N~l~c~ 168 (220)
T 2v70_A 163 NPFNCN 168 (220)
T ss_dssp CCEECS
T ss_pred cCCcCC
Confidence 666544
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=1.7e-17 Score=147.67 Aligned_cols=174 Identities=27% Similarity=0.292 Sum_probs=132.1
Q ss_pred ccccccCCcEEeeccCcccceeEEEeecCcccccchhhhhcCCCCCEEECCCcccccCCccchhhccCCcEeecCCcccc
Q 037249 185 SMASLCNLRTIYLSGCVSKELEILVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKLN 264 (420)
Q Consensus 185 ~~~~~~~L~~L~l~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 264 (420)
....+++|+.|++++|.+.. . ..+..+++|+.|++++|.+.+..+ +..+++|++|++++|.++
T Consensus 41 ~~~~l~~L~~L~l~~~~i~~-------------~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 103 (291)
T 1h6t_A 41 TQNELNSIDQIIANNSDIKS-------------V--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK 103 (291)
T ss_dssp CHHHHHTCCEEECTTSCCCC-------------C--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred chhhcCcccEEEccCCCccc-------------C--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC
Confidence 44567777877777765532 2 236778999999999999998744 888999999999999987
Q ss_pred CccchhhhcccCccceEeecCCccceecCCCCCCccceeeecccceeeccccCcccccccccccCCccEEEccCCccccC
Q 037249 265 GTLFEIHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLGLRSFYLDLFNNSFSGSISHFCYQNLMLLTLSNNKFTGN 344 (420)
Q Consensus 265 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 344 (420)
+ ++ .+..+++|+.|++++|.+... .....+++|++|++++|++++.
T Consensus 104 ~-~~--~l~~l~~L~~L~L~~n~i~~~-------------------------------~~l~~l~~L~~L~l~~n~l~~~ 149 (291)
T 1h6t_A 104 D-LS--SLKDLKKLKSLSLEHNGISDI-------------------------------NGLVHLPQLESLYLGNNKITDI 149 (291)
T ss_dssp C-GG--GGTTCTTCCEEECTTSCCCCC-------------------------------GGGGGCTTCCEEECCSSCCCCC
T ss_pred C-Ch--hhccCCCCCEEECCCCcCCCC-------------------------------hhhcCCCCCCEEEccCCcCCcc
Confidence 4 33 478899999999988877632 1111346788888888888843
Q ss_pred CcccccccccccEEeccCCccccccCccccccCCCceEeCCCcccccccchhhhhcCCCceEEEeecccccc
Q 037249 345 LPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVGENEFVGNISTWFGERFSRVVVLILRSNQFRG 416 (420)
Q Consensus 345 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~~L~~L~l~~~~~~~ 416 (420)
..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+++. + .+.. +++|+.|++++|+++.
T Consensus 150 --~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~-l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 150 --TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAG-LKNLDVLELFSQECLN 214 (291)
T ss_dssp --GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTT-CTTCSEEEEEEEEEEC
T ss_pred --hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhcc-CCCCCEEECcCCcccC
Confidence 577888888888888888885443 78888888888888888753 3 3554 8888888888888764
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.75 E-value=5e-18 Score=143.51 Aligned_cols=161 Identities=25% Similarity=0.280 Sum_probs=128.7
Q ss_pred eeEEEeecCcccccchhhhhcCCCCCEEECCCcccccCCccchhhccCCcEeecCCccccCccchhhhcccCccceEeec
Q 037249 205 LEILVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVN 284 (420)
Q Consensus 205 l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~ 284 (420)
++.|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.++ .++...+..+++|+.|+++
T Consensus 30 l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 30 TTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp CSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC-ccCHhHhcCccCCCEEEcC
Confidence 344444455556566667889999999999999999887777889999999999999998 4554468899999999999
Q ss_pred CCccceecCCCCCCccceeeecccceeeccccCcccccccccccCCccEEEccCCccccCCcccccccccccEEeccCCc
Q 037249 285 ENNLTLKVNHDWVPPFQLVQLGLRSFYLDLFNNSFSGSISHFCYQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNI 364 (420)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~ 364 (420)
+|.+.......+. .+++|++|++++|++++..+..+..+++|+.|++++|+
T Consensus 109 ~N~l~~~~~~~~~-----------------------------~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 109 TNQLQSLPDGVFD-----------------------------KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp SSCCCCCCTTTTT-----------------------------TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CCcCcccCHhHhc-----------------------------cCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC
Confidence 9887644332222 24689999999999997666678899999999999998
Q ss_pred cccccCccccccCCCceEeCCCcccccccchhhhhcCCC
Q 037249 365 FSGTIPISLKNCTALMILDVGENEFVGNISTWFGERFSR 403 (420)
Q Consensus 365 ~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~~ 403 (420)
+. +.+++|++|+++.|++++.+|+.++. ++.
T Consensus 160 ~~-------~~~~~l~~L~~~~n~~~g~ip~~~~~-l~~ 190 (208)
T 2o6s_A 160 WD-------CTCPGIRYLSEWINKHSGVVRNSAGS-VAP 190 (208)
T ss_dssp BC-------CCTTTTHHHHHHHHHCTTTBBCTTSS-BCT
T ss_pred ee-------cCCCCHHHHHHHHHhCCceeeccCcc-ccC
Confidence 76 35678999999999999999988775 554
No 99
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.74 E-value=4e-17 Score=149.43 Aligned_cols=157 Identities=18% Similarity=0.191 Sum_probs=86.5
Q ss_pred EEEcccccCCCccchhhhhCCCCCCcEEEccCCCCCCCCchhhccCCCCCEEEccCCcCCCCCCCCCCCCChhhhhcccc
Q 037249 91 QLDLCYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSWLYRLTHF 170 (420)
Q Consensus 91 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L 170 (420)
.++.++++++.++. .+ .+++++|++++|+++.+++..|.++++|++|++++|.+.+
T Consensus 13 ~v~C~~~~Lt~iP~---~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~------------------- 68 (350)
T 4ay9_X 13 VFLCQESKVTEIPS---DL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE------------------- 68 (350)
T ss_dssp EEEEESTTCCSCCT---TC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCC-------------------
T ss_pred EEEecCCCCCccCc---Cc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCC-------------------
Confidence 34444444554442 11 3467777777777777766667777777777777776532
Q ss_pred ccccccCCCCcc-ccccccccCCcEEeeccCcccceeEEEeecCcccccchhhhhcCCCCCEEECCCcccccCCccchhh
Q 037249 171 EQLSVADRPRRI-PRSMASLCNLRTIYLSGCVSKELEILVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNE 249 (420)
Q Consensus 171 ~~L~l~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 249 (420)
.+ +.++..++++.++.. +..|.++...+..+..+++|+.|++++|.+....+..+..
T Consensus 69 ----------~i~~~~f~~L~~l~~~l~------------~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~ 126 (350)
T 4ay9_X 69 ----------VIEADVFSNLPKLHEIRI------------EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 126 (350)
T ss_dssp ----------EECTTSBCSCTTCCEEEE------------EEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCC
T ss_pred ----------ccChhHhhcchhhhhhhc------------ccCCcccccCchhhhhccccccccccccccccCCchhhcc
Confidence 11 122334444433222 2223444445556666677777777777776654444555
Q ss_pred ccCCcEeecCCc-cccCccchhhhcccC-ccceEeecCCccceecCC
Q 037249 250 LSKLRILHLPDN-KLNGTLFEIHFVNLT-KLSVSSVNENNLTLKVNH 294 (420)
Q Consensus 250 ~~~L~~L~l~~~-~l~~~~~~~~~~~~~-~L~~l~l~~~~~~~~~~~ 294 (420)
...+..+++.++ .+. .++...+..+. .++.|++++|.+......
T Consensus 127 ~~~l~~l~l~~~~~i~-~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~ 172 (350)
T 4ay9_X 127 SLQKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKNGIQEIHNS 172 (350)
T ss_dssp BSSCEEEEEESCTTCC-EECTTSSTTSBSSCEEEECCSSCCCEECTT
T ss_pred cchhhhhhhccccccc-cccccchhhcchhhhhhccccccccCCChh
Confidence 556666766554 343 44443444443 466666666666544433
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.74 E-value=4.5e-17 Score=149.08 Aligned_cols=122 Identities=21% Similarity=0.176 Sum_probs=60.9
Q ss_pred cEEecccCCCCCCCchhhhhccccCceeecCCCcccCCCCCCCCCCCCccEEEeeccccc-ccccccccCCCcccE-EEc
Q 037249 17 SYLGLSFNDFQGVQIPRFIGSIRNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLY-VENFLWLSGLSFLEQ-LDL 94 (420)
Q Consensus 17 ~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~-L~l 94 (420)
+.++.+++.++ ++|..+ .+++++|++++|+++...+.+|+++++|++|++++|.+. ..+..+|.++++++. +.+
T Consensus 12 ~~v~C~~~~Lt--~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT--EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC--SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC--ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 45666666555 344433 245666666666666433445666666666666666642 233344555555443 233
Q ss_pred ccccCCCccchhhhhCCCCCCcEEEccCCCCCCCCchhhccCCCCCEEEc
Q 037249 95 CYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPLTISNFSSLTVLDL 144 (420)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 144 (420)
.+|++...+. ..+..+++|++|++++|++..+++..+....++..+++
T Consensus 88 ~~N~l~~l~~--~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l 135 (350)
T 4ay9_X 88 KANNLLYINP--EAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDI 135 (350)
T ss_dssp EETTCCEECT--TSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEE
T ss_pred cCCcccccCc--hhhhhccccccccccccccccCCchhhcccchhhhhhh
Confidence 3344443321 13344555555555555554444433333334444444
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=1.6e-17 Score=139.03 Aligned_cols=154 Identities=16% Similarity=0.204 Sum_probs=110.5
Q ss_pred cCCCCCEEECCCcccccCCccchhhccCCcEeecCCccccCccchhhhcccCccceEeecCCccceecCCCCCCccceee
Q 037249 225 HFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQ 304 (420)
Q Consensus 225 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~ 304 (420)
.+++|+.|++++|.+.+. + .+..+++|++|++++|.++ .++ .+..+++|++|++++|.+....+..+.
T Consensus 42 ~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~l~~n~~~-~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~------- 109 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDL-T-GIEYAHNIKDLTINNIHAT-NYN--PISGLSNLERLRIMGKDVTSDKIPNLS------- 109 (197)
T ss_dssp HHHTCCEEEEESSCCSCC-T-TGGGCTTCSEEEEESCCCS-CCG--GGTTCTTCCEEEEECTTCBGGGSCCCT-------
T ss_pred hcCCccEEeccCCCccCh-H-HHhcCCCCCEEEccCCCCC-cch--hhhcCCCCCEEEeECCccCcccChhhc-------
Confidence 445677777777777644 3 5667777777777777654 222 466677777777777766543222222
Q ss_pred ecccceeeccccCcccccccccccCCccEEEccCCccccCCcccccccccccEEeccCCc-cccccCccccccCCCceEe
Q 037249 305 LGLRSFYLDLFNNSFSGSISHFCYQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNI-FSGTIPISLKNCTALMILD 383 (420)
Q Consensus 305 l~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~ 383 (420)
.+++|++|++++|++++..+..+..+++|++|++++|. +. .++ .+..+++|++|+
T Consensus 110 ----------------------~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~ 165 (197)
T 4ezg_A 110 ----------------------GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLN 165 (197)
T ss_dssp ----------------------TCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEE
T ss_pred ----------------------CCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEE
Confidence 23689999999999987778889999999999999998 65 555 688999999999
Q ss_pred CCCcccccccchhhhhcCCCceEEEeeccccccC
Q 037249 384 VGENEFVGNISTWFGERFSRVVVLILRSNQFRGL 417 (420)
Q Consensus 384 l~~n~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~ 417 (420)
+++|++++.. .+.. +++|++|++++|++++.
T Consensus 166 l~~n~i~~~~--~l~~-l~~L~~L~l~~N~i~~~ 196 (197)
T 4ezg_A 166 IQFDGVHDYR--GIED-FPKLNQLYAFSQTIGGK 196 (197)
T ss_dssp CTTBCCCCCT--TGGG-CSSCCEEEECBC-----
T ss_pred CCCCCCcChH--Hhcc-CCCCCEEEeeCcccCCc
Confidence 9999998633 4554 99999999999998753
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.73 E-value=2e-17 Score=159.39 Aligned_cols=183 Identities=20% Similarity=0.249 Sum_probs=91.3
Q ss_pred ccccccccCCC-CccccccccccCCcEEeeccCcccceeEEEeecCcccccchhhhhcCCCCCEEECCCcccccCCccch
Q 037249 169 HFEQLSVADRP-RRIPRSMASLCNLRTIYLSGCVSKELEILVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSL 247 (420)
Q Consensus 169 ~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 247 (420)
+++.|+++++. ..+|..+ +++|+.|++++|.+ + .+| ..+++|+.|++++|.+..+ |. +
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l-------------~-~ip---~~l~~L~~L~Ls~N~l~~i-p~-l 118 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNAL-------------I-SLP---ELPASLEYLDACDNRLSTL-PE-L 118 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCC-------------S-CCC---CCCTTCCEEECCSSCCSCC-CC-C
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCC-------------c-ccc---cccCCCCEEEccCCCCCCc-ch-h
Confidence 66666666665 4455443 24555555555443 3 122 2356777777777777764 44 4
Q ss_pred hhccCCcEeecCCccccCccchhhhcccCccceEeecCCccceecCCCCCCccceeeecccceeeccccCcccccccccc
Q 037249 248 NELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLGLRSFYLDLFNNSFSGSISHFC 327 (420)
Q Consensus 248 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~ 327 (420)
.. +|++|++++|.+++ ++. .+++|+.|++++|.+..... ....++ .+++++|.+++... ..
T Consensus 119 ~~--~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~-------~L~Ls~N~L~~lp~-l~ 179 (571)
T 3cvr_A 119 PA--SLKHLDVDNNQLTM-LPE----LPALLEYINADNNQLTMLPE----LPTSLE-------VLSVRNNQLTFLPE-LP 179 (571)
T ss_dssp CT--TCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSCCCC----CCTTCC-------EEECCSSCCSCCCC-CC
T ss_pred hc--CCCEEECCCCcCCC-CCC----cCccccEEeCCCCccCcCCC----cCCCcC-------EEECCCCCCCCcch-hh
Confidence 33 77777777777764 443 56777777777776654222 111111 34444444444222 11
Q ss_pred cCCccEEEccCCccccCCcccccccccc-------cEEeccCCccccccCccccccCCCceEeCCCcccccccchhh
Q 037249 328 YQNLMLLTLSNNKFTGNLPNSLGSLTSL-------VSLHLHKNIFSGTIPISLKNCTALMILDVGENEFVGNISTWF 397 (420)
Q Consensus 328 ~~~L~~L~l~~~~l~~~~~~~~~~~~~L-------~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l 397 (420)
++|+.|++++|+++ .+|. +.. +| +.|++++|.++ .+|..+..+++|+.|++++|++++..|..+
T Consensus 180 -~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 180 -ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESL 250 (571)
T ss_dssp -TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred -CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence 44444444444444 2333 222 33 44444444444 344444444444444444444444444443
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.73 E-value=5.6e-17 Score=138.05 Aligned_cols=136 Identities=21% Similarity=0.258 Sum_probs=100.8
Q ss_pred CCCCEEECCCcccccCCccchhhccCCcEeecCCccccCccchhhhcccCccceEeecCCccceecCCCCCCccceeeec
Q 037249 227 KNLDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLG 306 (420)
Q Consensus 227 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~ 306 (420)
+.++.|++++|.+....+..+..+++|++|++++|.+++..+. .|.++++|++|++++|.+.......|.
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~-~~~~l~~L~~L~Ls~N~l~~l~~~~f~--------- 101 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPD-AFQGLRSLNSLVLYGNKITELPKSLFE--------- 101 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTT-TTTTCSSCCEEECCSSCCCCCCTTTTT---------
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHH-HhhCCcCCCEEECCCCcCCccCHhHcc---------
Confidence 5788888888888877666777788888888888887743333 677788888888777776643322222
Q ss_pred ccceeeccccCcccccccccccCCccEEEccCCccccCCcccccccccccEEeccCCccccccCccccccCCCceEeCCC
Q 037249 307 LRSFYLDLFNNSFSGSISHFCYQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVGE 386 (420)
Q Consensus 307 ~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 386 (420)
.+++|++|++++|++++..+..|..+++|+.|++++|.+++..+..+..+++|++|++++
T Consensus 102 --------------------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 102 --------------------GLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp --------------------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred --------------------CCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCC
Confidence 236788888888888877777888888888888888888866666778888888888888
Q ss_pred cccccc
Q 037249 387 NEFVGN 392 (420)
Q Consensus 387 n~~~~~ 392 (420)
|++...
T Consensus 162 N~~~c~ 167 (220)
T 2v9t_B 162 NPFICD 167 (220)
T ss_dssp SCEECS
T ss_pred CCcCCC
Confidence 877543
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.72 E-value=4.9e-17 Score=144.63 Aligned_cols=173 Identities=23% Similarity=0.272 Sum_probs=111.9
Q ss_pred hccccCceeecCCCcccCCCCCCCCCCCCccEEEeecccccccccccccCCCcccEEEcccccCCCccchhhhhCCCCCC
Q 037249 36 GSIRNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENFLWLSGLSFLEQLDLCYVNLSKASDWLLVANTLPSL 115 (420)
Q Consensus 36 ~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 115 (420)
..+++|++|++++|.+.. ++ .+..+++|++|++++|.+..... +..+++|+.|++++|.+...+ .+..+++|
T Consensus 43 ~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~----~l~~l~~L 114 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLS----SLKDLKKL 114 (291)
T ss_dssp HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGG----GGTTCTTC
T ss_pred hhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCCh----hhccCCCC
Confidence 456666666666666653 22 35666666666666666655443 566666666666666665543 25566677
Q ss_pred cEEEccCCCCCCCCchhhccCCCCCEEEccCCcCCCCCCCCCCCCChhhhhccccccccccCCC-CccccccccccCCcE
Q 037249 116 VELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSWLYRLTHFEQLSVADRP-RRIPRSMASLCNLRT 194 (420)
Q Consensus 116 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~ 194 (420)
++|++++|++..++ .+..+++|++|++++|.++. + ..+..+++|+.|+++++. ..++. +..+++|+.
T Consensus 115 ~~L~L~~n~i~~~~--~l~~l~~L~~L~l~~n~l~~--------~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~ 182 (291)
T 1h6t_A 115 KSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITD--------I-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQN 182 (291)
T ss_dssp CEEECTTSCCCCCG--GGGGCTTCCEEECCSSCCCC--------C-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCE
T ss_pred CEEECCCCcCCCCh--hhcCCCCCCEEEccCCcCCc--------c-hhhccCCCCCEEEccCCccccchh-hcCCCccCE
Confidence 77777777666653 45666677777777766643 2 456666677777776666 33333 777788888
Q ss_pred EeeccCcccceeEEEeecCcccccchhhhhcCCCCCEEECCCcccccCC
Q 037249 195 IYLSGCVSKELEILVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLV 243 (420)
Q Consensus 195 L~l~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 243 (420)
|++++|.+.. . + .+..+++|+.|++++|++....
T Consensus 183 L~L~~N~i~~-------------l-~-~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 183 LYLSKNHISD-------------L-R-ALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp EECCSSCCCB-------------C-G-GGTTCTTCSEEEEEEEEEECCC
T ss_pred EECCCCcCCC-------------C-h-hhccCCCCCEEECcCCcccCCc
Confidence 8888776532 1 2 3678899999999999988753
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.72 E-value=9.3e-17 Score=137.62 Aligned_cols=137 Identities=27% Similarity=0.266 Sum_probs=109.5
Q ss_pred CCCCEEECCCcccccCCccchhhccCCcEeecCCccccCccchhhhcccCccceEeecCCccceecCCCCCCccceeeec
Q 037249 227 KNLDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLG 306 (420)
Q Consensus 227 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~ 306 (420)
++|+.|++++|.+.+..+..+..+++|++|++++|.+. .++...+..+++|+.|++++|.+.......+.
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--------- 109 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFD--------- 109 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT---------
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEECCCCcCCccChhHhC---------
Confidence 77999999999999887888888899999999999886 55554678888888888888877643332222
Q ss_pred ccceeeccccCcccccccccccCCccEEEccCCccccCCcccccccccccEEeccCCccccccCccccccCCCceEeCCC
Q 037249 307 LRSFYLDLFNNSFSGSISHFCYQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVGE 386 (420)
Q Consensus 307 ~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 386 (420)
.+++|++|++++|+++ .+|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++
T Consensus 110 --------------------~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 168 (229)
T 3e6j_A 110 --------------------RLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFG 168 (229)
T ss_dssp --------------------TCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred --------------------cchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeC
Confidence 2367889999999988 6778888899999999999998865566788889999999999
Q ss_pred cccccccc
Q 037249 387 NEFVGNIS 394 (420)
Q Consensus 387 n~~~~~~~ 394 (420)
|++....+
T Consensus 169 N~~~c~c~ 176 (229)
T 3e6j_A 169 NPWDCECR 176 (229)
T ss_dssp SCBCTTBG
T ss_pred CCccCCcc
Confidence 98876543
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.71 E-value=4.1e-17 Score=149.94 Aligned_cols=157 Identities=24% Similarity=0.219 Sum_probs=88.7
Q ss_pred CCCEEECCCcccccCCccchh-hccCCcEeecCCccccCccchhhhcccCccceEeecCCccceecCCCCCCccceeeec
Q 037249 228 NLDTLDLGNNSIVGLVPLSLN-ELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLG 306 (420)
Q Consensus 228 ~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~ 306 (420)
.++.|++++|.+.+..+..+. .+++|+.|++++|.++ .++...|..+++|+.|++++|.+.......+..
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-------- 110 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSD-------- 110 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTT--------
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECCCCcCCcCCHHHhCC--------
Confidence 466666666666665555554 5666666666666665 333335666666666666666655433322222
Q ss_pred ccceeeccccCcccccccccccCCccEEEccCCccccCCcccccccccccEEeccCCccccccCccc---cccCCCceEe
Q 037249 307 LRSFYLDLFNNSFSGSISHFCYQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIPISL---KNCTALMILD 383 (420)
Q Consensus 307 ~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l---~~l~~L~~L~ 383 (420)
+++|++|++++|++++..+..|..+++|+.|++++|.++...+..+ ..+++|+.|+
T Consensus 111 ---------------------l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~ 169 (361)
T 2xot_A 111 ---------------------LQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLD 169 (361)
T ss_dssp ---------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEE
T ss_pred ---------------------CcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEE
Confidence 2456666666666665555566666666666666666663222223 4466666666
Q ss_pred CCCcccccccchhhhhcCCC--ceEEEeeccccc
Q 037249 384 VGENEFVGNISTWFGERFSR--VVVLILRSNQFR 415 (420)
Q Consensus 384 l~~n~~~~~~~~~l~~~~~~--L~~L~l~~~~~~ 415 (420)
+++|+++...+..+.. ++. ++.|++++|++.
T Consensus 170 L~~N~l~~l~~~~~~~-l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 170 LSSNKLKKLPLTDLQK-LPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCSSCCCCCCHHHHHH-SCHHHHTTEECCSSCEE
T ss_pred CCCCCCCccCHHHhhh-ccHhhcceEEecCCCcc
Confidence 6666665444444443 554 356666666654
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.71 E-value=9.1e-17 Score=156.48 Aligned_cols=174 Identities=27% Similarity=0.301 Sum_probs=119.3
Q ss_pred ccccccCCcEEeeccCcccceeEEEeecCcccccchhhhhcCCCCCEEECCCcccccCCccchhhccCCcEeecCCcccc
Q 037249 185 SMASLCNLRTIYLSGCVSKELEILVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKLN 264 (420)
Q Consensus 185 ~~~~~~~L~~L~l~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 264 (420)
.+..+++|+.|++++|.+..+ + .+..+++|+.|+|++|.+.+..+ +..+++|+.|++++|.+.
T Consensus 38 ~~~~L~~L~~L~l~~n~i~~l--------------~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~ 100 (605)
T 1m9s_A 38 TQNELNSIDQIIANNSDIKSV--------------Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK 100 (605)
T ss_dssp CHHHHTTCCCCBCTTCCCCCC--------------T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred chhcCCCCCEEECcCCCCCCC--------------h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC
Confidence 356777888888877765321 2 46788999999999999988744 788999999999999987
Q ss_pred CccchhhhcccCccceEeecCCccceecCCCCCCccceeeecccceeeccccCcccccccccccCCccEEEccCCccccC
Q 037249 265 GTLFEIHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLGLRSFYLDLFNNSFSGSISHFCYQNLMLLTLSNNKFTGN 344 (420)
Q Consensus 265 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 344 (420)
+ ++ .+..+++|+.|++++|.+.... ....+++|+.|+|++|++++.
T Consensus 101 ~-l~--~l~~l~~L~~L~Ls~N~l~~l~-------------------------------~l~~l~~L~~L~Ls~N~l~~l 146 (605)
T 1m9s_A 101 D-LS--SLKDLKKLKSLSLEHNGISDIN-------------------------------GLVHLPQLESLYLGNNKITDI 146 (605)
T ss_dssp C-CT--TSTTCTTCCEEECTTSCCCCCG-------------------------------GGGGCTTCSEEECCSSCCCCC
T ss_pred C-Ch--hhccCCCCCEEEecCCCCCCCc-------------------------------cccCCCccCEEECCCCccCCc
Confidence 4 33 5788899999999888776321 111235666677777666632
Q ss_pred CcccccccccccEEeccCCccccccCccccccCCCceEeCCCcccccccchhhhhcCCCceEEEeecccccc
Q 037249 345 LPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVGENEFVGNISTWFGERFSRVVVLILRSNQFRG 416 (420)
Q Consensus 345 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~~L~~L~l~~~~~~~ 416 (420)
..+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|++.+. ..+.. +++|+.|++++|++++
T Consensus 147 --~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~-l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 147 --TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAG-LKNLDVLELFSQECLN 211 (605)
T ss_dssp --GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTT-CTTCSEEECCSEEEEC
T ss_pred --hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHcc-CCCCCEEEccCCcCcC
Confidence 456666667777777666664433 66666677777777666543 23443 6667777777666654
No 108
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.71 E-value=1.1e-16 Score=145.10 Aligned_cols=132 Identities=15% Similarity=0.162 Sum_probs=70.5
Q ss_pred CCCCCCccCC--CCCCcEEecccCCCCCCCchhhhhc-cccCceeecCCCccc--CCCCCCCCCCCCccEEEeecccccc
Q 037249 3 VGKVNPSLLD--LNHLSYLGLSFNDFQGVQIPRFIGS-IRNLRYLNLSDTQFV--GMIPPPLGNLSNLQSLDLSLNYLYV 77 (420)
Q Consensus 3 ~~~l~~~~~~--~~~L~~L~l~~~~i~~~~~~~~~~~-l~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~ 77 (420)
+|+++..+.. ++.|+.|.++++ +... -...+.. +++|++||+++|++. .... +.++.++.+.+..+.+
T Consensus 12 ~g~l~~~l~~~~~~~l~~L~l~g~-i~~~-~~~~l~~~l~~L~~LdLs~n~i~~~~~~~---~~~~~~~~~~~~~~~I-- 84 (329)
T 3sb4_A 12 PGTLISMMTEEEANSITHLTLTGK-LNAE-DFRHLRDEFPSLKVLDISNAEIKMYSGKA---GTYPNGKFYIYMANFV-- 84 (329)
T ss_dssp TTCGGGGSCHHHHHHCSEEEEEEE-ECHH-HHHHHHHSCTTCCEEEEEEEEECCEEESS---SSSGGGCCEEECTTEE--
T ss_pred CCcHHhhccchhhCceeEEEEecc-ccHH-HHHHHHHhhccCeEEecCcceeEEecCcc---cccccccccccccccc--
Confidence 4555555554 667777777764 2211 1223333 666777777777765 1111 1222234444444432
Q ss_pred cccccccC--------CCcccEEEcccccCCCccchhhhhCCCCCCcEEEccCCCCCCCCchhhccCCCCCEEEcc
Q 037249 78 ENFLWLSG--------LSFLEQLDLCYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPLTISNFSSLTVLDLS 145 (420)
Q Consensus 78 ~~~~~~~~--------l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 145 (420)
+..+|.+ +++|+.+++.+ .+..++. ..+..|++|+.+++.++.+..+++..|..+.++.++...
T Consensus 85 -~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~--~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~ 156 (329)
T 3sb4_A 85 -PAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIED--AAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLG 156 (329)
T ss_dssp -CTTTTEEEETTEEEECTTCCC-CBCT-TCCEECT--TTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTT
T ss_pred -CHHHhcccccccccccCCCcEEECCc-cccchhH--HHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCc
Confidence 3334455 66677776666 5554432 245566677777776666666666666665555555443
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=5.5e-17 Score=142.06 Aligned_cols=59 Identities=31% Similarity=0.388 Sum_probs=30.2
Q ss_pred CCccEEEccCCccccCCcccccccccccEEeccCCccccccCccccccCCCceEeCCCccccc
Q 037249 329 QNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVGENEFVG 391 (420)
Q Consensus 329 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 391 (420)
++|++|++++|++++. + .+..+++|+.|++++|.+.+. ..+..+++|+.|++++|++++
T Consensus 128 ~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 128 KNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp TTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred ccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence 4555555555555522 2 445555555555555555432 344555555555555555543
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.69 E-value=9.4e-17 Score=156.37 Aligned_cols=171 Identities=23% Similarity=0.281 Sum_probs=78.1
Q ss_pred ccccCceeecCCCcccCCCCCCCCCCCCccEEEeecccccccccccccCCCcccEEEcccccCCCccchhhhhCCCCCCc
Q 037249 37 SIRNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENFLWLSGLSFLEQLDLCYVNLSKASDWLLVANTLPSLV 116 (420)
Q Consensus 37 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 116 (420)
.+++|++|++++|.+.. ++ .+..+++|+.|++++|.+..... +..+++|+.|++++|.+...+ .+..+++|+
T Consensus 41 ~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~----~l~~l~~L~ 112 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS----SLKDLKKLK 112 (605)
T ss_dssp HHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT----TSTTCTTCC
T ss_pred cCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh----hhccCCCCC
Confidence 34444445554444432 22 24444455555554444443332 444444555555544444332 233444555
Q ss_pred EEEccCCCCCCCCchhhccCCCCCEEEccCCcCCCCCCCCCCCCChhhhhccccccccccCCC-CccccccccccCCcEE
Q 037249 117 ELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSWLYRLTHFEQLSVADRP-RRIPRSMASLCNLRTI 195 (420)
Q Consensus 117 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L 195 (420)
+|++++|.+..++ .+..+++|+.|++++|.+.. + ..+..+++|+.|+++++. ..++. +..+++|+.|
T Consensus 113 ~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~--------l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L 180 (605)
T 1m9s_A 113 SLSLEHNGISDIN--GLVHLPQLESLYLGNNKITD--------I-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNL 180 (605)
T ss_dssp EEECTTSCCCCCG--GGGGCTTCSEEECCSSCCCC--------C-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred EEEecCCCCCCCc--cccCCCccCEEECCCCccCC--------c-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEE
Confidence 5555555444432 24444555555555554432 1 334444455555554444 22222 4455555555
Q ss_pred eeccCcccceeEEEeecCcccccchhhhhcCCCCCEEECCCcccccC
Q 037249 196 YLSGCVSKELEILVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVGL 242 (420)
Q Consensus 196 ~l~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 242 (420)
++++|.+.. . ..+..+++|+.|++++|++...
T Consensus 181 ~Ls~N~i~~-------------l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 181 YLSKNHISD-------------L--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp ECCSSCCCB-------------C--GGGTTCTTCSEEECCSEEEECC
T ss_pred ECcCCCCCC-------------C--hHHccCCCCCEEEccCCcCcCC
Confidence 555544321 1 1244555566666666555543
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.69 E-value=1.7e-16 Score=135.07 Aligned_cols=123 Identities=28% Similarity=0.360 Sum_probs=64.0
Q ss_pred cccccchhhhhcCCCCCEEECCCcccccCCccchhhccCCcEeecCCccccCccchhhhcccCccceEeecCCccceecC
Q 037249 214 SISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLKVN 293 (420)
Q Consensus 214 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~ 293 (420)
.+.+..+..+..+++|+.|++++|.+....+..+..+++|++|++++|.++ .++...+..+++|+.|++++|.+....+
T Consensus 43 ~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~ 121 (220)
T 2v9t_B 43 TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRV 121 (220)
T ss_dssp CCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred cCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC-ccCHhHccCCCCCCEEECCCCCCCEeCH
Confidence 333334444555555666666666555555555555555666666665555 3333345555555555555555443322
Q ss_pred CCCCCccceeeecccceeeccccCcccccccccccCCccEEEccCCccccCCcccccccccccEEeccCCccc
Q 037249 294 HDWVPPFQLVQLGLRSFYLDLFNNSFSGSISHFCYQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFS 366 (420)
Q Consensus 294 ~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~ 366 (420)
..+.. +++|++|++++|++++..+..|..+++|+.|++++|++.
T Consensus 122 ~~~~~-----------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 122 DAFQD-----------------------------LHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TTTTT-----------------------------CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred HHcCC-----------------------------CCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 22211 245555566666555444445555555666666555554
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.69 E-value=4.3e-16 Score=133.47 Aligned_cols=132 Identities=27% Similarity=0.278 Sum_probs=66.6
Q ss_pred CCCcEEecccCCCCCCCchhhhhccccCceeecCCCcccCCCCCCCCCCCCccEEEeecccccccccccccCCCcccEEE
Q 037249 14 NHLSYLGLSFNDFQGVQIPRFIGSIRNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENFLWLSGLSFLEQLD 93 (420)
Q Consensus 14 ~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 93 (420)
++|++|++++|.+... .+..+..+++|++|++++|.+....+..|..+++|++|++++|.+.......+..+++|+.|+
T Consensus 40 ~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 40 TNAQILYLHDNQITKL-EPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp TTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEcCCCccCcc-CHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence 4555555555555433 344445555555555555555433333445555555555555555544444445555555555
Q ss_pred cccccCCCccchhhhhCCCCCCcEEEccCCCCCCCCchhhccCCCCCEEEccCCcC
Q 037249 94 LCYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQF 149 (420)
Q Consensus 94 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 149 (420)
+++|.+...+. .+..+++|++|++++|++..++...+..+++|++|++++|.+
T Consensus 119 Ls~N~l~~lp~---~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 119 MCCNKLTELPR---GIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp CCSSCCCSCCT---TGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred ccCCcccccCc---ccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence 55555554432 234455555555555555555444445555555555555544
No 113
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.68 E-value=2.6e-18 Score=166.35 Aligned_cols=203 Identities=18% Similarity=0.222 Sum_probs=119.2
Q ss_pred ccCCCCCEEEccCCcCCCCCCCCCCCCChhhhhccccccccccCCC---------------CccccccccccCCcEEe-e
Q 037249 134 SNFSSLTVLDLSFSQFDNSLIPGWGPIPSWLYRLTHFEQLSVADRP---------------RRIPRSMASLCNLRTIY-L 197 (420)
Q Consensus 134 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~---------------~~~~~~~~~~~~L~~L~-l 197 (420)
..+++|+.|++++|.++. +|..+..+++|+.|+++++. ...|..++.+++|+.|+ +
T Consensus 346 ~~~~~L~~L~Ls~n~L~~--------Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l 417 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTV--------LQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM 417 (567)
T ss_dssp STTTTSSSCCCCHHHHHH--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGG
T ss_pred ccCccceeccCChhhHHh--------hHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcch
Confidence 456667777777776643 66667777777777664432 12233444455555555 3
Q ss_pred ccCcccceeEEEeecCcccccchhhhhcCCCCCEEECCCcccccCCccchhhccCCcEeecCCccccCccchhhhcccCc
Q 037249 198 SGCVSKELEILVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNGTLFEIHFVNLTK 277 (420)
Q Consensus 198 ~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~ 277 (420)
+.+.+..+..+.+.+|.++...+ ..|+.|++++|.+.+. |. ++.+++|+.|++++|.++ .+|. .+..
T Consensus 418 ~~n~~~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N~l~-~lp~-~~~~--- 484 (567)
T 1dce_A 418 RAAYLDDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHNRLR-ALPP-ALAA--- 484 (567)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSSC-CC-GGGGTTCCEEECCSSCCC-CCCG-GGGG---
T ss_pred hhcccchhhhhhhhcccccccCc------cCceEEEecCCCCCCC-cC-ccccccCcEeecCccccc-ccch-hhhc---
Confidence 44333333333333333322111 1345555555555443 32 444555555555555444 3332 2222
Q ss_pred cceEeecCCccceecCCCCCCccceeeecccceeeccccCcccccccccccCCccEEEccCCccccCCcccccccccccE
Q 037249 278 LSVSSVNENNLTLKVNHDWVPPFQLVQLGLRSFYLDLFNNSFSGSISHFCYQNLMLLTLSNNKFTGNLPNSLGSLTSLVS 357 (420)
Q Consensus 278 L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~ 357 (420)
+++|++|++++|++++ +| .+..+++|+.
T Consensus 485 --------------------------------------------------l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~ 512 (567)
T 1dce_A 485 --------------------------------------------------LRCLEVLQASDNALEN-VD-GVANLPRLQE 512 (567)
T ss_dssp --------------------------------------------------CTTCCEEECCSSCCCC-CG-GGTTCSSCCE
T ss_pred --------------------------------------------------CCCCCEEECCCCCCCC-Cc-ccCCCCCCcE
Confidence 3567777777887774 55 7788888888
Q ss_pred EeccCCcccccc-CccccccCCCceEeCCCcccccccch--hhhhcCCCceEEEe
Q 037249 358 LHLHKNIFSGTI-PISLKNCTALMILDVGENEFVGNIST--WFGERFSRVVVLIL 409 (420)
Q Consensus 358 L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~n~~~~~~~~--~l~~~~~~L~~L~l 409 (420)
|++++|.+++.. |..++.+++|+.|++++|++++..+. .+...+++|+.|++
T Consensus 513 L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 513 LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp EECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred EECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 888888888555 88888888888888888888766542 23444888888864
No 114
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.67 E-value=4.3e-16 Score=150.11 Aligned_cols=193 Identities=22% Similarity=0.251 Sum_probs=119.0
Q ss_pred cCceeecCCCcccCCCCCCCCCCCCccEEEeecccccccccccccCCCcccEEEcccccCCCccchhhhhCCCCCCcEEE
Q 037249 40 NLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENFLWLSGLSFLEQLDLCYVNLSKASDWLLVANTLPSLVELR 119 (420)
Q Consensus 40 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 119 (420)
++++|++++|.+.+ +|..+ .++|++|++++|.+...+ ..+++|+.|++++|.+..++. +.. +|++|+
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~----l~~--~L~~L~ 126 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLPE----LPA--SLKHLD 126 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC----CCT--TCCEEE
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCcch----hhc--CCCEEE
Confidence 67777777776653 55444 256777777777665433 345667777777776666543 211 677777
Q ss_pred ccCCCCCCCCchhhccCCCCCEEEccCCcCCCCCCCCCCCCChhhhhccccccccccCCC-CccccccccccCCcEEeec
Q 037249 120 LSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSWLYRLTHFEQLSVADRP-RRIPRSMASLCNLRTIYLS 198 (420)
Q Consensus 120 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~ 198 (420)
+++|.++.++. .+++|++|++++|.++. ++. .+++|+.|++++|. ..+|. +. ++|+.|+++
T Consensus 127 Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~--------lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls 188 (571)
T 3cvr_A 127 VDNNQLTMLPE----LPALLEYINADNNQLTM--------LPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVS 188 (571)
T ss_dssp CCSSCCSCCCC----CCTTCCEEECCSSCCSC--------CCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECC
T ss_pred CCCCcCCCCCC----cCccccEEeCCCCccCc--------CCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECc
Confidence 77777766554 46677777777776643 232 34667777777766 44555 44 677777777
Q ss_pred cCcccceeEEEeecCcccccchhhhhcCCCCCEEECCCcccccCCccchhhccCCcEeecCCccccCccchhhhccc
Q 037249 199 GCVSKELEILVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNGTLFEIHFVNL 275 (420)
Q Consensus 199 ~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 275 (420)
+|.+..+.. +.. ......+.|+.|++++|.+..+ |..+..+++|+.|++++|++++..+. .+..+
T Consensus 189 ~N~L~~lp~--~~~--------~L~~~~~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~L~~N~l~~~~p~-~l~~l 253 (571)
T 3cvr_A 189 TNLLESLPA--VPV--------RNHHSEETEIFFRCRENRITHI-PENILSLDPTCTIILEDNPLSSRIRE-SLSQQ 253 (571)
T ss_dssp SSCCSSCCC--CC----------------CCEEEECCSSCCCCC-CGGGGGSCTTEEEECCSSSCCHHHHH-HHHHH
T ss_pred CCCCCchhh--HHH--------hhhcccccceEEecCCCcceec-CHHHhcCCCCCEEEeeCCcCCCcCHH-HHHHh
Confidence 766543221 000 0011123348999999999865 66677799999999999998876665 44443
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.67 E-value=4.1e-16 Score=132.66 Aligned_cols=155 Identities=18% Similarity=0.168 Sum_probs=102.5
Q ss_pred CEEECCCcccccCCccchhhccCCcEeecCCccccCccchhhhcccCccceEeecCCccceecCCCCCCccceeeecccc
Q 037249 230 DTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLGLRS 309 (420)
Q Consensus 230 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 309 (420)
+.++++++.+..+ |..+ .+.+++|++++|.+++..+...+..+++|+.|++++|.+....+..+..
T Consensus 14 ~~l~~s~n~l~~i-P~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~----------- 79 (220)
T 2v70_A 14 TTVDCSNQKLNKI-PEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG----------- 79 (220)
T ss_dssp TEEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT-----------
T ss_pred CEeEeCCCCcccC-ccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC-----------
Confidence 3666666666654 3333 2356777777777764434335667777777777777766443332222
Q ss_pred eeeccccCcccccccccccCCccEEEccCCccccCCcccccccccccEEeccCCccccccCccccccCCCceEeCCCccc
Q 037249 310 FYLDLFNNSFSGSISHFCYQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVGENEF 389 (420)
Q Consensus 310 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 389 (420)
+++|++|++++|++++..+..|..+++|++|++++|.+.+..|..+..+++|++|++++|.+
T Consensus 80 ------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 141 (220)
T 2v70_A 80 ------------------ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQI 141 (220)
T ss_dssp ------------------CTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCC
T ss_pred ------------------CCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcC
Confidence 25677777777777766666677777777777777777766667777777777777777777
Q ss_pred ccccchhhhhcCCCceEEEeeccccccC
Q 037249 390 VGNISTWFGERFSRVVVLILRSNQFRGL 417 (420)
Q Consensus 390 ~~~~~~~l~~~~~~L~~L~l~~~~~~~~ 417 (420)
++..|..+.. +++|++|++++|+++..
T Consensus 142 ~~~~~~~~~~-l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 142 TTVAPGAFDT-LHSLSTLNLLANPFNCN 168 (220)
T ss_dssp CCBCTTTTTT-CTTCCEEECCSCCEECS
T ss_pred CEECHHHhcC-CCCCCEEEecCcCCcCC
Confidence 7666666665 77777777777777654
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.66 E-value=1e-15 Score=128.03 Aligned_cols=131 Identities=23% Similarity=0.331 Sum_probs=71.1
Q ss_pred CCCCCCcEEecccCCCCCCCchhhhhccccCceeecCCCcccCCCCCCCCCCCCccEEEeecccccccccccccCCCccc
Q 037249 11 LDLNHLSYLGLSFNDFQGVQIPRFIGSIRNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENFLWLSGLSFLE 90 (420)
Q Consensus 11 ~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 90 (420)
.++++|++|++++|.+. .++ .+..+++|++|++++|.+. . +..+..+++|++|++++|.+....+..+..+++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~--~l~-~l~~l~~L~~L~l~~n~~~-~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT--DLT-GIEYAHNIKDLTINNIHAT-N-YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHTCCEEEEESSCCS--CCT-TGGGCTTCSEEEEESCCCS-C-CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhcCCccEEeccCCCcc--ChH-HHhcCCCCCEEEccCCCCC-c-chhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 44555666666666555 233 4555666666666666443 1 22455566666666666665554444555566666
Q ss_pred EEEcccccCCCccchhhhhCCCCCCcEEEccCCC-CCCCCchhhccCCCCCEEEccCCcCC
Q 037249 91 QLDLCYVNLSKASDWLLVANTLPSLVELRLSNCQ-LHHLPPLTISNFSSLTVLDLSFSQFD 150 (420)
Q Consensus 91 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~ 150 (420)
.|++++|.+.... ...+..+++|++|++++|. +..++ .+..+++|++|++++|.++
T Consensus 116 ~L~Ls~n~i~~~~--~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~ 172 (197)
T 4ezg_A 116 LLDISHSAHDDSI--LTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVH 172 (197)
T ss_dssp EEECCSSBCBGGG--HHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCC
T ss_pred EEEecCCccCcHh--HHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCc
Confidence 6666665554421 2234455666666666655 44443 3555556666666555553
No 117
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.65 E-value=5.9e-16 Score=142.20 Aligned_cols=158 Identities=23% Similarity=0.237 Sum_probs=122.4
Q ss_pred eeEEEeecCcccccchhhhh-cCCCCCEEECCCcccccCCccchhhccCCcEeecCCccccCccchhhhcccCccceEee
Q 037249 205 LEILVLQSSSISGHLTEQIG-HFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSV 283 (420)
Q Consensus 205 l~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l 283 (420)
++.|++++|.+++..+..+. .+++|+.|++++|.+....+..+..+++|++|++++|.++ .++...|..+++|+.|++
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L 119 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLL 119 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEEC
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCC-cCCHHHhCCCcCCCEEEC
Confidence 34445555566666666676 8999999999999999887788999999999999999997 555557899999999999
Q ss_pred cCCccceecCCCCCCccceeeecccceeeccccCcccccccccccCCccEEEccCCccccCCcccc---cccccccEEec
Q 037249 284 NENNLTLKVNHDWVPPFQLVQLGLRSFYLDLFNNSFSGSISHFCYQNLMLLTLSNNKFTGNLPNSL---GSLTSLVSLHL 360 (420)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~---~~~~~L~~L~l 360 (420)
++|.+....+..+.. +++|++|++++|++++..+..| ..+++|+.|++
T Consensus 120 ~~N~i~~~~~~~~~~-----------------------------l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L 170 (361)
T 2xot_A 120 YNNHIVVVDRNAFED-----------------------------MAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDL 170 (361)
T ss_dssp CSSCCCEECTTTTTT-----------------------------CTTCCEEECCSSCCCSCCGGGTC----CTTCCEEEC
T ss_pred CCCcccEECHHHhCC-----------------------------cccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEEC
Confidence 999887654444432 3678999999999985444455 56899999999
Q ss_pred cCCccccccCccccccCC--CceEeCCCcccccc
Q 037249 361 HKNIFSGTIPISLKNCTA--LMILDVGENEFVGN 392 (420)
Q Consensus 361 ~~n~~~~~~~~~l~~l~~--L~~L~l~~n~~~~~ 392 (420)
++|.+....+..+..++. ++.|++++|++...
T Consensus 171 ~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 171 SSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp CSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred CCCCCCccCHHHhhhccHhhcceEEecCCCccCC
Confidence 999998555567777876 48899999887643
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.64 E-value=2.5e-17 Score=159.49 Aligned_cols=176 Identities=17% Similarity=0.100 Sum_probs=126.6
Q ss_pred cCCCCCEEECCCcccccCCccchhhccCCcEeecCCcc-------------ccCccchhhhcccCccceEe-ecCCc---
Q 037249 225 HFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNK-------------LNGTLFEIHFVNLTKLSVSS-VNENN--- 287 (420)
Q Consensus 225 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------------l~~~~~~~~~~~~~~L~~l~-l~~~~--- 287 (420)
.++.|+.|++++|.+... |..++.+++|+.|++++|. ..+..+. .+..+++|+.|+ ++.+.
T Consensus 347 ~~~~L~~L~Ls~n~L~~L-p~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~-~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 347 TDEQLFRCELSVEKSTVL-QSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKE-TLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp TTTTSSSCCCCHHHHHHH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHH-HHHHHHHHHHHCGGGHHHHHH
T ss_pred cCccceeccCChhhHHhh-HHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHH-HHHHHHhcccCcchhhcccch
Confidence 345566666666666533 5566666666666665543 2222222 445555555555 33332
Q ss_pred ----------cceecCCCCCCccceeeecccceeeccccCcccccccccccCCccEEEccCCccccCCcccccccccccE
Q 037249 288 ----------LTLKVNHDWVPPFQLVQLGLRSFYLDLFNNSFSGSISHFCYQNLMLLTLSNNKFTGNLPNSLGSLTSLVS 357 (420)
Q Consensus 288 ----------~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~ 357 (420)
+...... .++ .+++++|.+++......+++|+.|++++|+++ .+|..+..+++|+.
T Consensus 425 L~~l~l~~n~i~~l~~~------~L~-------~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~ 490 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYA------DVR-------VLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEV 490 (567)
T ss_dssp HHHHHHHHHHHHHHHHT------TCS-------EEECTTSCCSSCCCGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCE
T ss_pred hhhhhhhcccccccCcc------Cce-------EEEecCCCCCCCcCccccccCcEeecCccccc-ccchhhhcCCCCCE
Confidence 2211110 111 57777888777654346789999999999999 78899999999999
Q ss_pred EeccCCccccccCccccccCCCceEeCCCccccccc-chhhhhcCCCceEEEeeccccccCCC
Q 037249 358 LHLHKNIFSGTIPISLKNCTALMILDVGENEFVGNI-STWFGERFSRVVVLILRSNQFRGLLP 419 (420)
Q Consensus 358 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~l~~~~~~L~~L~l~~~~~~~~~~ 419 (420)
|++++|.++ .+| .++.+++|++|++++|.+++.. |..+.. +++|++|++++|++++..|
T Consensus 491 L~Ls~N~l~-~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~-l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 491 LQASDNALE-NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVS-CPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp EECCSSCCC-CCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGG-CTTCCEEECTTSGGGGSSS
T ss_pred EECCCCCCC-CCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhc-CCCCCEEEecCCcCCCCcc
Confidence 999999999 467 8999999999999999999876 888887 9999999999999998765
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.63 E-value=5.5e-16 Score=135.67 Aligned_cols=171 Identities=18% Similarity=0.231 Sum_probs=120.3
Q ss_pred CCCCCcEEecccCCCCCCCchhhhhccccCceeecCCCcccCCCCCCCCCCCCccEEEeecccccccccccccCCCcccE
Q 037249 12 DLNHLSYLGLSFNDFQGVQIPRFIGSIRNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENFLWLSGLSFLEQ 91 (420)
Q Consensus 12 ~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 91 (420)
.+.++..++++.+.+++ ++ .+..+++|++|++++|.+. .++ .+..+++|++|++++|.+..... +..+++|+.
T Consensus 17 ~l~~l~~l~l~~~~i~~--~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~ 89 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTD--LV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEE 89 (263)
T ss_dssp HHHHHHHHHHTCSCTTS--EE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCE
T ss_pred HHHHHHHHHhcCCCccc--cc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCE
Confidence 45566677788877763 33 5677888888888888876 444 57788888888888888776655 778888888
Q ss_pred EEcccccCCCccchhhhhCCCCCCcEEEccCCCCCCCCchhhccCCCCCEEEccCCcCCCCCCCCCCCCChhhhhccccc
Q 037249 92 LDLCYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSWLYRLTHFE 171 (420)
Q Consensus 92 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~ 171 (420)
|++++|.+...+. +.. ++|++|++++|++..++ .+..+++|++|++++|.+++ +
T Consensus 90 L~L~~N~l~~l~~----~~~-~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~~--------~----------- 143 (263)
T 1xeu_A 90 LSVNRNRLKNLNG----IPS-ACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKS--------I----------- 143 (263)
T ss_dssp EECCSSCCSCCTT----CCC-SSCCEEECCSSCCSBSG--GGTTCTTCCEEECTTSCCCB--------C-----------
T ss_pred EECCCCccCCcCc----ccc-CcccEEEccCCccCCCh--hhcCcccccEEECCCCcCCC--------C-----------
Confidence 8888888877653 222 78888888888887764 47778888888888887743 1
Q ss_pred cccccCCCCccccccccccCCcEEeeccCcccceeEEEeecCcccccchhhhhcCCCCCEEECCCcccccC
Q 037249 172 QLSVADRPRRIPRSMASLCNLRTIYLSGCVSKELEILVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVGL 242 (420)
Q Consensus 172 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 242 (420)
..+..+++|+.|++++|.+.. . ..+..+++|+.|++++|.+...
T Consensus 144 ------------~~l~~l~~L~~L~L~~N~i~~-------------~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 144 ------------VMLGFLSKLEVLDLHGNEITN-------------T--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp ------------GGGGGCTTCCEEECTTSCCCB-------------C--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ------------hHHccCCCCCEEECCCCcCcc-------------h--HHhccCCCCCEEeCCCCcccCC
Confidence 134555666666666655432 1 3455667777777777777655
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.61 E-value=3.7e-15 Score=121.20 Aligned_cols=86 Identities=23% Similarity=0.181 Sum_probs=63.7
Q ss_pred CCccEEEccCCccccCCcccccccccccEEeccCCcccccc-CccccccCCCceEeCCCcccccccc---hhhhhcCCCc
Q 037249 329 QNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTI-PISLKNCTALMILDVGENEFVGNIS---TWFGERFSRV 404 (420)
Q Consensus 329 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~n~~~~~~~---~~l~~~~~~L 404 (420)
++|++|++++|++++.+|..+..+++|+.|++++|.+.+.. +..+..+++|++|++++|++++..+ ..+.. +++|
T Consensus 71 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~-l~~L 149 (168)
T 2ell_A 71 PKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKL-LPQL 149 (168)
T ss_dssp SSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTT-CSSC
T ss_pred CCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHh-CccC
Confidence 56778888888887556777777888888888888887432 2677788888888888888875544 24444 8888
Q ss_pred eEEEeeccccc
Q 037249 405 VVLILRSNQFR 415 (420)
Q Consensus 405 ~~L~l~~~~~~ 415 (420)
++|++++|.+.
T Consensus 150 ~~L~l~~n~~~ 160 (168)
T 2ell_A 150 TYLDGYDREDQ 160 (168)
T ss_dssp CEETTEETTSC
T ss_pred cEecCCCCChh
Confidence 88888888764
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=4.3e-15 Score=120.85 Aligned_cols=135 Identities=24% Similarity=0.239 Sum_probs=87.7
Q ss_pred CCCCcEEecccCCCCCCCchhhhhccccCceeecCCCcccCCCCCCCCCCCCccEEEeecccccccccccccCCCcccEE
Q 037249 13 LNHLSYLGLSFNDFQGVQIPRFIGSIRNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENFLWLSGLSFLEQL 92 (420)
Q Consensus 13 ~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 92 (420)
.++|++|++++|.+....++..+..+++|++|++++|.+... ..+..+++|++|++++|.+....+..+..+++|+.|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 366777777777765334566666777777777777776643 556777777777777777665444445556777777
Q ss_pred EcccccCCCccchhhhhCCCCCCcEEEccCCCCCCCCc---hhhccCCCCCEEEccCCcCC
Q 037249 93 DLCYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPP---LTISNFSSLTVLDLSFSQFD 150 (420)
Q Consensus 93 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~~~~L~~L~l~~~~~~ 150 (420)
++++|.+...+. ...+..+++|++|++++|.+...+. ..+..+++|++|++++|...
T Consensus 101 ~Ls~N~l~~~~~-~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLKDIST-LEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCCSSGG-GGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccCcchh-HHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 777776665532 1345566777777777776666654 35666677777777666553
No 122
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.60 E-value=6.1e-14 Score=130.40 Aligned_cols=74 Identities=12% Similarity=0.128 Sum_probs=46.9
Q ss_pred CCccEEEccCCccccCCcccccccccccEEeccCCccccccCccccccCCCceEeCCCcccccccchhhhhcCCCceEE
Q 037249 329 QNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVGENEFVGNISTWFGERFSRVVVL 407 (420)
Q Consensus 329 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~~L~~L 407 (420)
.+|+.+++.++ ++.....+|.++.+|+.+++..+ ++.....+|..|++|+.+++..+ +. .....+. ++++|+.+
T Consensus 320 ~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~-~c~~L~~I 393 (394)
T 4fs7_A 320 TSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFE-DTTKFKWI 393 (394)
T ss_dssp TTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBC-TTCEEEEE
T ss_pred CCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-Ehhheec-CCCCCcEE
Confidence 46677777543 44345567888888888888766 55455667888888888888655 21 1222333 36666653
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.57 E-value=8.6e-15 Score=116.47 Aligned_cols=82 Identities=23% Similarity=0.182 Sum_probs=66.1
Q ss_pred CCccEEEccCCccccCCcccccccccccEEeccCCccccc-cCccccccCCCceEeCCCcccccccc---hhhhhcCCCc
Q 037249 329 QNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGT-IPISLKNCTALMILDVGENEFVGNIS---TWFGERFSRV 404 (420)
Q Consensus 329 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~---~~l~~~~~~L 404 (420)
++|++|++++|++++.+|..+..+++|+.|++++|.+.+. .+..+..+++|++|++++|++++..+ ..+.. +++|
T Consensus 64 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~-l~~L 142 (149)
T 2je0_A 64 NKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKL-LPQL 142 (149)
T ss_dssp TTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHH-CTTC
T ss_pred CCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHH-CCCc
Confidence 5788888888888866777778899999999999998853 34788889999999999999986655 34554 8999
Q ss_pred eEEEeec
Q 037249 405 VVLILRS 411 (420)
Q Consensus 405 ~~L~l~~ 411 (420)
++|++++
T Consensus 143 ~~L~l~d 149 (149)
T 2je0_A 143 TYLDGYD 149 (149)
T ss_dssp CEETTBC
T ss_pred ccccCCC
Confidence 9988764
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.57 E-value=1.3e-14 Score=120.62 Aligned_cols=134 Identities=18% Similarity=0.167 Sum_probs=102.4
Q ss_pred CcEeecCCccccCccchhhhcccCccceEeecCCccceecCCCCCCccceeeecccceeeccccCcccccccccccCCcc
Q 037249 253 LRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLGLRSFYLDLFNNSFSGSISHFCYQNLM 332 (420)
Q Consensus 253 L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~L~ 332 (420)
.+.++++++.++ .+|. .+. ++++.|++++|.+........ ...+++|+
T Consensus 10 ~~~l~~s~~~l~-~ip~-~~~--~~l~~L~l~~n~i~~~~~~~~----------------------------~~~l~~L~ 57 (192)
T 1w8a_A 10 GTTVDCTGRGLK-EIPR-DIP--LHTTELLLNDNELGRISSDGL----------------------------FGRLPHLV 57 (192)
T ss_dssp TTEEECTTSCCS-SCCS-CCC--TTCSEEECCSCCCCSBCCSCS----------------------------GGGCTTCC
T ss_pred CCEEEcCCCCcC-cCcc-CCC--CCCCEEECCCCcCCccCCccc----------------------------cccCCCCC
Confidence 378888888875 5554 222 277777777776653222100 11357899
Q ss_pred EEEccCCccccCCcccccccccccEEeccCCccccccCccccccCCCceEeCCCcccccccchhhhhcCCCceEEEeecc
Q 037249 333 LLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVGENEFVGNISTWFGERFSRVVVLILRSN 412 (420)
Q Consensus 333 ~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~~L~~L~l~~~ 412 (420)
+|++++|++++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|++++..|..+.. +++|++|++++|
T Consensus 58 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~L~~N 136 (192)
T 1w8a_A 58 KLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEH-LNSLTSLNLASN 136 (192)
T ss_dssp EEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTT-CTTCCEEECTTC
T ss_pred EEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhc-CCCCCEEEeCCC
Confidence 9999999998777888999999999999999998777777888999999999999998887877776 899999999999
Q ss_pred ccccCCC
Q 037249 413 QFRGLLP 419 (420)
Q Consensus 413 ~~~~~~~ 419 (420)
++++..|
T Consensus 137 ~l~c~c~ 143 (192)
T 1w8a_A 137 PFNCNCH 143 (192)
T ss_dssp CBCCSGG
T ss_pred CccCcCc
Confidence 9887643
No 125
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.57 E-value=1.3e-14 Score=131.47 Aligned_cols=258 Identities=11% Similarity=0.041 Sum_probs=152.1
Q ss_pred CCCCcEEecccCCCCCCCchhhhhccccCceeecCCCcccCCCCCCCCC--------CCCccEEEeeccccccccccccc
Q 037249 13 LNHLSYLGLSFNDFQGVQIPRFIGSIRNLRYLNLSDTQFVGMIPPPLGN--------LSNLQSLDLSLNYLYVENFLWLS 84 (420)
Q Consensus 13 ~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~--------l~~L~~L~l~~~~~~~~~~~~~~ 84 (420)
+++|+.||+++|.+...... -+.++.++.+.+..+.+. ..+|.+ |++|++|+++. .+...+..+|.
T Consensus 48 l~~L~~LdLs~n~i~~~~~~--~~~~~~~~~~~~~~~~I~---~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~ 121 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGK--AGTYPNGKFYIYMANFVP---AYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFK 121 (329)
T ss_dssp CTTCCEEEEEEEEECCEEES--SSSSGGGCCEEECTTEEC---TTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTT
T ss_pred hccCeEEecCcceeEEecCc--cccccccccccccccccC---HHHhcccccccccccCCCcEEECCc-cccchhHHHhh
Confidence 78899999999988722111 122333455555555432 356777 89999999988 77888888889
Q ss_pred CCCcccEEEcccccCCCccchhhhhCCCCCCcEEEccCC----CCCCCCchhhccCCCCC-EEEccCCcCCCCCCCCCCC
Q 037249 85 GLSFLEQLDLCYVNLSKASDWLLVANTLPSLVELRLSNC----QLHHLPPLTISNFSSLT-VLDLSFSQFDNSLIPGWGP 159 (420)
Q Consensus 85 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~----~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~ 159 (420)
.|++|+.++++.+.+..++. ..+..+.++..+..... ....+....+..+..|+ .+.+.... .
T Consensus 122 ~~~~L~~l~l~~n~i~~i~~--~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~----------~ 189 (329)
T 3sb4_A 122 GCDNLKICQIRKKTAPNLLP--EALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMG----------K 189 (329)
T ss_dssp TCTTCCEEEBCCSSCCEECT--TSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTC----------C
T ss_pred cCcccceEEcCCCCccccch--hhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCC----------c
Confidence 99999999999888776643 34566777777766552 22333344566666666 44443221 1
Q ss_pred CChhhh----hccccccccccCCCC--ccccccccccCCcEEeeccCcccceeEEEeecCcccccchhhhhcCCCCCEEE
Q 037249 160 IPSWLY----RLTHFEQLSVADRPR--RIPRSMASLCNLRTIYLSGCVSKELEILVLQSSSISGHLTEQIGHFKNLDTLD 233 (420)
Q Consensus 160 ~~~~l~----~~~~L~~L~l~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 233 (420)
++..+. ...++..+.+.+.-. ........|++|+.++++++ .++......|.++++|+.++
T Consensus 190 l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n-------------~i~~I~~~aF~~~~~L~~l~ 256 (329)
T 3sb4_A 190 LEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKT-------------NATTIPDFTFAQKKYLLKIK 256 (329)
T ss_dssp HHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTB-------------CCCEECTTTTTTCTTCCEEE
T ss_pred HHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCC-------------CcceecHhhhhCCCCCCEEE
Confidence 222211 122233333322210 00000112444555444443 33445555667777777777
Q ss_pred CCCcccccCCccchhhccCCc-EeecCCccccCccchhhhcccCccceEeecCCccceecCCCCCCccceee
Q 037249 234 LGNNSIVGLVPLSLNELSKLR-ILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQ 304 (420)
Q Consensus 234 l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~ 304 (420)
+.++ +..+...+|.+|++|+ .+++.+ .++ .+....|.+|++|+.+++.++.+.......|..+.+++.
T Consensus 257 l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ 325 (329)
T 3sb4_A 257 LPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKL 325 (329)
T ss_dssp CCTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCE
T ss_pred CCcc-cceehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhh
Confidence 7776 5555566777777777 777776 444 455557777777777777777777666666666655443
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.56 E-value=6.4e-15 Score=117.24 Aligned_cols=126 Identities=21% Similarity=0.213 Sum_probs=62.6
Q ss_pred ccCceeecCCCccc-CCCCCCCCCCCCccEEEeecccccccccccccCCCcccEEEcccccCCCccchhhhhCCCCCCcE
Q 037249 39 RNLRYLNLSDTQFV-GMIPPPLGNLSNLQSLDLSLNYLYVENFLWLSGLSFLEQLDLCYVNLSKASDWLLVANTLPSLVE 117 (420)
Q Consensus 39 ~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 117 (420)
+++++|++++|.+. +.+|..+..+++|++|++++|.+... ..+..+++|+.|++++|.+... ....+..+++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~--~~~~~~~l~~L~~ 92 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGG--LEVLAEKCPNLTH 92 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSC--THHHHHHCTTCCE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccch--HHHHhhhCCCCCE
Confidence 44555555555544 33444445555555555555554433 3344555555555555555442 1123334555555
Q ss_pred EEccCCCCCCCC-chhhccCCCCCEEEccCCcCCCCCCCCCCCCC----hhhhhcccccccccc
Q 037249 118 LRLSNCQLHHLP-PLTISNFSSLTVLDLSFSQFDNSLIPGWGPIP----SWLYRLTHFEQLSVA 176 (420)
Q Consensus 118 L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~----~~l~~~~~L~~L~l~ 176 (420)
|++++|.+.+++ +..+..+++|++|++++|.++. .+ ..+..+++|+.|+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~--------~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN--------LNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG--------STTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc--------hHHHHHHHHHHCCCcccccCC
Confidence 666555555432 1345555666666666655532 22 245555566655553
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.55 E-value=3.7e-14 Score=117.86 Aligned_cols=109 Identities=26% Similarity=0.330 Sum_probs=57.2
Q ss_pred CCCEEECCCcccccCCcc-chhhccCCcEeecCCccccCccchhhhcccCccceEeecCCccceecCCCCCCccceeeec
Q 037249 228 NLDTLDLGNNSIVGLVPL-SLNELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLG 306 (420)
Q Consensus 228 ~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~ 306 (420)
.++.|++++|.+....+. .++.+++|++|++++|.+++..+. .+.++++|+.|++++|.+....+..+.
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~--------- 99 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPN-AFEGASHIQELQLGENKIKEISNKMFL--------- 99 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTT-TTTTCTTCCEEECCSCCCCEECSSSST---------
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHh-HcCCcccCCEEECCCCcCCccCHHHhc---------
Confidence 566666666666655432 355666666666666666543333 455555555555555554432222111
Q ss_pred ccceeeccccCcccccccccccCCccEEEccCCccccCCcccccccccccEEeccCCccc
Q 037249 307 LRSFYLDLFNNSFSGSISHFCYQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFS 366 (420)
Q Consensus 307 ~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~ 366 (420)
.+++|++|++++|++++..|..+..+++|+.|++++|++.
T Consensus 100 --------------------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 100 --------------------GLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp --------------------TCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred --------------------CCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 1234555555555555444555555555555555555554
No 128
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.53 E-value=6.1e-15 Score=147.19 Aligned_cols=89 Identities=30% Similarity=0.407 Sum_probs=48.3
Q ss_pred CCccEEEccCCccccCCcccccccccccEEeccCCccccccCccccccCCCceEeCCCcccccccchhhhhcCCCceEEE
Q 037249 329 QNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVGENEFVGNISTWFGERFSRVVVLI 408 (420)
Q Consensus 329 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~~L~~L~ 408 (420)
++|++|+|++|.++ .+|..|..+++|+.|+|++|.+. .+|..|+.+++|++|+|++|.+++..|..+...-..+..++
T Consensus 270 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~ 347 (727)
T 4b8c_D 270 SNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFY 347 (727)
T ss_dssp TTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHh
Confidence 45556666666655 45555666666666666666665 55555666666666666666665555554433111122244
Q ss_pred eeccccccCCC
Q 037249 409 LRSNQFRGLLP 419 (420)
Q Consensus 409 l~~~~~~~~~~ 419 (420)
+++|.+++.+|
T Consensus 348 l~~N~l~~~~p 358 (727)
T 4b8c_D 348 LRDNRPEIPLP 358 (727)
T ss_dssp HHHCCCCCCCC
T ss_pred hccCcccCcCc
Confidence 55555555444
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.52 E-value=5.7e-14 Score=115.20 Aligned_cols=133 Identities=21% Similarity=0.202 Sum_probs=93.4
Q ss_pred CCEEECCCcccccCCccchhhccCCcEeecCCccccCccchhhhcccCccceEeecCCccceecCCCCCCccceeeeccc
Q 037249 229 LDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLGLR 308 (420)
Q Consensus 229 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~ 308 (420)
.+.++++++.+... |..+ .++|++|++++|.++ .++...+..+++|++|++++|.+.......+.
T Consensus 9 ~~~l~~~~~~l~~~-p~~~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~----------- 73 (177)
T 2o6r_A 9 GTEIRCNSKGLTSV-PTGI--PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFD----------- 73 (177)
T ss_dssp TTEEECCSSCCSSC-CTTC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTT-----------
T ss_pred CCEEEecCCCCccC-CCCC--CCCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHcc-----------
Confidence 46788888877765 3322 367888888888877 44444667778888888877776533322221
Q ss_pred ceeeccccCcccccccccccCCccEEEccCCccccCCcccccccccccEEeccCCccccccCccccccCCCceEeCCCcc
Q 037249 309 SFYLDLFNNSFSGSISHFCYQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVGENE 388 (420)
Q Consensus 309 ~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 388 (420)
.+++|++|++++|++++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|+
T Consensus 74 ------------------~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 74 ------------------KLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp ------------------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ------------------CCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 23678888888888886666667788888888888888875555556778888888888888
Q ss_pred cccccc
Q 037249 389 FVGNIS 394 (420)
Q Consensus 389 ~~~~~~ 394 (420)
+.+..+
T Consensus 136 ~~~~~~ 141 (177)
T 2o6r_A 136 WDCSCP 141 (177)
T ss_dssp BCCCHH
T ss_pred eeccCc
Confidence 776554
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.52 E-value=4.1e-14 Score=115.88 Aligned_cols=136 Identities=18% Similarity=0.117 Sum_probs=95.8
Q ss_pred ccCCCCCCcEEecccCCCCCCCchhhhhccccCceeecCCCcccCCCCCCCCCCCCccEEEeecccccccccccccCCCc
Q 037249 9 SLLDLNHLSYLGLSFNDFQGVQIPRFIGSIRNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENFLWLSGLSF 88 (420)
Q Consensus 9 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 88 (420)
.+.++++|+.|++++|.+. .++......++|++|++++|.+... ..+..+++|++|++++|.+...+...+..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~--~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP--VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCC--SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCc--hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 4667888888888888887 3443333334888888888888754 56788888888888888877666555577778
Q ss_pred ccEEEcccccCCCccchhhhhCCCCCCcEEEccCCCCCCCCch---hhccCCCCCEEEccCCcC
Q 037249 89 LEQLDLCYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPL---TISNFSSLTVLDLSFSQF 149 (420)
Q Consensus 89 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~~~~L~~L~l~~~~~ 149 (420)
|+.|++++|.+...+. ...+..+++|++|++++|.+...+.. .+..+++|++|+++++..
T Consensus 90 L~~L~L~~N~i~~~~~-~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 90 LTELILTNNSLVELGD-LDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCEEECCSCCCCCGGG-GGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCEEECCCCcCCcchh-hHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 8888888877766543 12455677777777777777665543 366677777777776654
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.50 E-value=8.4e-14 Score=114.00 Aligned_cols=81 Identities=20% Similarity=0.166 Sum_probs=37.6
Q ss_pred CccEEEccCCccccCCcccccccccccEEeccCCccccccCc--cccccCCCceEeCCCcccccccchh----hhhcCCC
Q 037249 330 NLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIPI--SLKNCTALMILDVGENEFVGNISTW----FGERFSR 403 (420)
Q Consensus 330 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~--~l~~l~~L~~L~l~~n~~~~~~~~~----l~~~~~~ 403 (420)
+|++|++++|++++..+..+..+++|+.|++++|.+. .+|. .+..+++|+.|++++|++.. .|.. +.. +++
T Consensus 65 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~-l~~ 141 (176)
T 1a9n_A 65 RLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYK-VPQ 141 (176)
T ss_dssp SCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHH-CTT
T ss_pred CCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHH-CCc
Confidence 4445555555554332233344555555555555554 3333 44455555555555555542 2222 332 555
Q ss_pred ceEEEeeccc
Q 037249 404 VVVLILRSNQ 413 (420)
Q Consensus 404 L~~L~l~~~~ 413 (420)
|++|++++|.
T Consensus 142 L~~Ld~~~n~ 151 (176)
T 1a9n_A 142 VRVLDFQKVK 151 (176)
T ss_dssp CSEETTEECC
T ss_pred cceeCCCcCC
Confidence 5555555544
No 132
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.50 E-value=1e-12 Score=121.61 Aligned_cols=58 Identities=9% Similarity=0.097 Sum_probs=28.1
Q ss_pred CCccEEEccCCccccCCcccccccccccEEeccCCccccccCccccccC-CCceEeCCCcc
Q 037249 329 QNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCT-ALMILDVGENE 388 (420)
Q Consensus 329 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~-~L~~L~l~~n~ 388 (420)
.+|+.+.+..+ ++.....+|.++ +|+.+++.+|.........+..++ .++.|.+..+.
T Consensus 323 ~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 323 RKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp CSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred CCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 34555555333 332334455555 555555555555433334444443 45555555443
No 133
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.49 E-value=1.8e-12 Score=120.38 Aligned_cols=81 Identities=19% Similarity=0.097 Sum_probs=62.7
Q ss_pred cCCccEEEccCCccccCCcccccccccccEEeccCCccccccCccccccCCCceEeCCCcccccccchhhhhcCCCceEE
Q 037249 328 YQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVGENEFVGNISTWFGERFSRVVVL 407 (420)
Q Consensus 328 ~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~~L~~L 407 (420)
+.+|+.+.+.++ ++.....+|.++.+|+.+++..+ ++.....+|..|.+|+.+++..+ ++......+. +|++|+.+
T Consensus 296 ~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~-~C~~L~~i 371 (394)
T 4fs7_A 296 CSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQ-GCINLKKV 371 (394)
T ss_dssp CTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBT-TCTTCCEE
T ss_pred cccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhh-CCCCCCEE
Confidence 367888888765 55455678999999999999755 66466778999999999999877 6544444455 59999999
Q ss_pred Eeecc
Q 037249 408 ILRSN 412 (420)
Q Consensus 408 ~l~~~ 412 (420)
++..+
T Consensus 372 ~lp~~ 376 (394)
T 4fs7_A 372 ELPKR 376 (394)
T ss_dssp EEEGG
T ss_pred EECCC
Confidence 99765
No 134
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.48 E-value=2.5e-12 Score=119.12 Aligned_cols=115 Identities=9% Similarity=0.066 Sum_probs=62.8
Q ss_pred chhhhhcCCCCCEEECCCcccc-----cCCccchhhccCCcEeecCCccccCccchhhhcccCccceEeecCCccceecC
Q 037249 219 LTEQIGHFKNLDTLDLGNNSIV-----GLVPLSLNELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLKVN 293 (420)
Q Consensus 219 ~~~~l~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~ 293 (420)
....|.++++|+.+.+.++.+. .+...+|.+|++|+.+.+.++ ++ .+....|.+|++|+.+.+..+ +.....
T Consensus 263 ~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~-~I~~~aF~~c~~L~~l~lp~~-l~~I~~ 339 (401)
T 4fdw_A 263 ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IR-ILGQGLLGGNRKVTQLTIPAN-VTQINF 339 (401)
T ss_dssp CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCCSCCEEEECTT-CCEECT
T ss_pred ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eE-EEhhhhhcCCCCccEEEECcc-ccEEcH
Confidence 3444555555555555554433 233445555555555555532 33 344445555555555555333 222222
Q ss_pred CCCCCccceeeecccceeeccccCcccccccccccCCccEEEccCCccccCCcccccccc-cccEEeccCCccc
Q 037249 294 HDWVPPFQLVQLGLRSFYLDLFNNSFSGSISHFCYQNLMLLTLSNNKFTGNLPNSLGSLT-SLVSLHLHKNIFS 366 (420)
Q Consensus 294 ~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~-~L~~L~l~~n~~~ 366 (420)
..|. .+ +|+.++++++.+.......|..++ +++.|.+..+.+.
T Consensus 340 ~aF~-----------------------------~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 340 SAFN-----------------------------NT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp TSSS-----------------------------SS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred HhCC-----------------------------CC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 2222 23 688888888877755566777774 7888888876543
No 135
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.48 E-value=3.1e-12 Score=118.86 Aligned_cols=327 Identities=13% Similarity=0.098 Sum_probs=168.7
Q ss_pred hhccc-cCceeecCCCcccCCCCCCCCCCCCccEEEeeccc---ccccccccccCCCcccEEEcccccCCCccchhhhhC
Q 037249 35 IGSIR-NLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNY---LYVENFLWLSGLSFLEQLDLCYVNLSKASDWLLVAN 110 (420)
Q Consensus 35 ~~~l~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~---~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 110 (420)
|..+. .|+.+.+... ++.+-..+|.+|.+|+.+.+..+. +...+..+|..+.+|+.+.+..+ +..... ..+.
T Consensus 59 F~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~--~aF~ 134 (394)
T 4gt6_A 59 FCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDS--EAFH 134 (394)
T ss_dssp TTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECT--TTTT
T ss_pred ccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehh--hhhh
Confidence 44443 4677776543 444445667777777777776543 55555666667777776655443 222221 2445
Q ss_pred CCCCCcEEEccCCCCCCCCchhhccCCCCCEEEccCCcCCCCCCCCCCCCChhhhhccccccccccCCC-Cccccccccc
Q 037249 111 TLPSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSWLYRLTHFEQLSVADRP-RRIPRSMASL 189 (420)
Q Consensus 111 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~ 189 (420)
.+.+|+.+.+.. .+..+....+..+..|+.+.+..+- +. +.........|+.+.+.... .....++..|
T Consensus 135 ~c~~L~~i~lp~-~~~~I~~~~F~~c~~L~~i~~~~~~-~~--------I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c 204 (394)
T 4gt6_A 135 HCEELDTVTIPE-GVTSVADGMFSYCYSLHTVTLPDSV-TA--------IEERAFTGTALTQIHIPAKVTRIGTNAFSEC 204 (394)
T ss_dssp TCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTTC-CE--------ECTTTTTTCCCSEEEECTTCCEECTTTTTTC
T ss_pred hhcccccccccc-eeeeecccceeccccccccccccee-eE--------eccccccccceeEEEECCcccccccchhhhc
Confidence 677777777754 3444555566677777777775441 11 11111223455555554443 2223445556
Q ss_pred cCCcEEeeccCcccceeEEEeecCcccccchhhhhcCCCCCEEECCCcccccCCccchhhccCCcEeecCCccccCccch
Q 037249 190 CNLRTIYLSGCVSKELEILVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNGTLFE 269 (420)
Q Consensus 190 ~~L~~L~l~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 269 (420)
.+++...................+.........+.....+..+.+... +......+|.++..|+.+.+.+... .+..
T Consensus 205 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~~--~I~~ 281 (394)
T 4gt6_A 205 FALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPDSVV--SIGT 281 (394)
T ss_dssp TTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTTCC--EECT
T ss_pred cccceecccccccccccceeecccccccccccccccccccceEEcCCc-ceEcccceeeecccccEEecccccc--eecC
Confidence 666665554433222111111111111110111112233444444322 2223345667777777777765532 3444
Q ss_pred hhhcccCccceEeecCCccceecCCCCCCccceeeecccceeeccccCcccccccccccCCccEEEccCCccccCCcccc
Q 037249 270 IHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLGLRSFYLDLFNNSFSGSISHFCYQNLMLLTLSNNKFTGNLPNSL 349 (420)
Q Consensus 270 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~ 349 (420)
..|.++++|+.+.+.. .+.......|..+ .+|+.+++..+ ++.....+|
T Consensus 282 ~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c-----------------------------~~L~~i~lp~~-v~~I~~~aF 330 (394)
T 4gt6_A 282 GAFMNCPALQDIEFSS-RITELPESVFAGC-----------------------------ISLKSIDIPEG-ITQILDDAF 330 (394)
T ss_dssp TTTTTCTTCCEEECCT-TCCEECTTTTTTC-----------------------------TTCCEEECCTT-CCEECTTTT
T ss_pred cccccccccccccCCC-cccccCceeecCC-----------------------------CCcCEEEeCCc-ccEehHhHh
Confidence 4667777777777642 2333333334333 46777777654 443455678
Q ss_pred cccccccEEeccCCccccccCccccccCCCceEeCCCcccccccchhhhhcCCCceEEEeecccc
Q 037249 350 GSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVGENEFVGNISTWFGERFSRVVVLILRSNQF 414 (420)
Q Consensus 350 ~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~~L~~L~l~~~~~ 414 (420)
.+|.+|+++.|..+ ++.....+|..|.+|+.+++.++.... ..+.. +..|+.+.+..+.+
T Consensus 331 ~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~-~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 331 AGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAIST-DSGLQNLPVAPGSI 390 (394)
T ss_dssp TTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBC-CCCC----------
T ss_pred hCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhc-cCCCCEEEeCCCCE
Confidence 88888888888654 554556678888888888888875431 23333 67888887776644
No 136
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.47 E-value=2.2e-13 Score=113.06 Aligned_cols=128 Identities=24% Similarity=0.286 Sum_probs=107.7
Q ss_pred cEEecccCCCCCCCchhhhhccccCceeecCCCcccCCCCCCCCCCCCccEEEeecccccccccccccCCCcccEEEccc
Q 037249 17 SYLGLSFNDFQGVQIPRFIGSIRNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENFLWLSGLSFLEQLDLCY 96 (420)
Q Consensus 17 ~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 96 (420)
++++++++.++ .+|..+ .+++++|++++|.++ .+|..|..+++|++|++++|.+.......|..+++|+.|++++
T Consensus 13 ~~l~~~~~~l~--~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK--VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS--SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC--cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 67889888887 455444 368999999999987 6778889999999999999999888888888999999999999
Q ss_pred ccCCCccchhhhhCCCCCCcEEEccCCCCCCCCchhhccCCCCCEEEccCCcCCC
Q 037249 97 VNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDN 151 (420)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 151 (420)
|.+...+. ..+..+++|++|++++|.+..++...+..+++|++|++++|.+..
T Consensus 88 N~l~~i~~--~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 88 NRLRCIPP--RTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp SCCCBCCT--TTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CccCEeCH--HHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 98887753 356788999999999999998888778889999999999998754
No 137
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.47 E-value=3.8e-13 Score=111.69 Aligned_cols=129 Identities=20% Similarity=0.252 Sum_probs=96.6
Q ss_pred CcEeecCCccccCccchhhhcccCccceEeecCCccceecCCCCCCccceeeecccceeeccccCcccccccccccCCcc
Q 037249 253 LRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLGLRSFYLDLFNNSFSGSISHFCYQNLM 332 (420)
Q Consensus 253 L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~L~ 332 (420)
-+.++++++.++ .+|.. + .++++.|++++|.+.... ..+ ..+++|+
T Consensus 12 ~~~l~~~~~~l~-~ip~~-~--~~~l~~L~L~~n~i~~ip-~~~-----------------------------~~l~~L~ 57 (193)
T 2wfh_A 12 DTVVRCSNKGLK-VLPKG-I--PRDVTELYLDGNQFTLVP-KEL-----------------------------SNYKHLT 57 (193)
T ss_dssp TTEEECTTSCCS-SCCSC-C--CTTCCEEECCSSCCCSCC-GGG-----------------------------GGCTTCC
T ss_pred CCEEEcCCCCCC-cCCCC-C--CCCCCEEECCCCcCchhH-HHh-----------------------------hcccCCC
Confidence 367888888876 55542 2 257777777777665211 111 1347899
Q ss_pred EEEccCCccccCCcccccccccccEEeccCCccccccCccccccCCCceEeCCCcccccccchhhhhcCCCceEEEeecc
Q 037249 333 LLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVGENEFVGNISTWFGERFSRVVVLILRSN 412 (420)
Q Consensus 333 ~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~~L~~L~l~~~ 412 (420)
+|++++|++++..+..|..+++|++|++++|.++...+..+..+++|++|++++|.++...+..+.. +++|++|++++|
T Consensus 58 ~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~L~~N 136 (193)
T 2wfh_A 58 LIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFND-LSALSHLAIGAN 136 (193)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTT-CTTCCEEECCSS
T ss_pred EEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhc-CccccEEEeCCC
Confidence 9999999998777778889999999999999998777778888999999999999988554445554 889999999999
Q ss_pred cccc
Q 037249 413 QFRG 416 (420)
Q Consensus 413 ~~~~ 416 (420)
++..
T Consensus 137 ~~~C 140 (193)
T 2wfh_A 137 PLYC 140 (193)
T ss_dssp CEEC
T ss_pred Ceec
Confidence 8864
No 138
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.46 E-value=6.1e-14 Score=140.00 Aligned_cols=135 Identities=20% Similarity=0.283 Sum_probs=78.2
Q ss_pred hhccCCCCCEEEccCCcCCCCCCCCCCCCChhhhhccccccccccCCC-CccccccccccCCcEEeeccCcccceeEEEe
Q 037249 132 TISNFSSLTVLDLSFSQFDNSLIPGWGPIPSWLYRLTHFEQLSVADRP-RRIPRSMASLCNLRTIYLSGCVSKELEILVL 210 (420)
Q Consensus 132 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~l~~L~l 210 (420)
.+..++.|+.|++++|.+.. ++..+..+++|+.|+++++. ..+|..+..+++|+.|++++|.+
T Consensus 219 ~~~~l~~L~~L~Ls~n~l~~--------l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l-------- 282 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQIFN--------ISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRL-------- 282 (727)
T ss_dssp ---CCCCCCEEECTTSCCSC--------CCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCC--------
T ss_pred hhccCCCCcEEECCCCCCCC--------CChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcC--------
Confidence 44555556666666555532 44444455555555555554 44566666677777777666544
Q ss_pred ecCcccccchhhhhcCCCCCEEECCCcccccCCccchhhccCCcEeecCCccccCccchhhhccc-CccceEeecCCccc
Q 037249 211 QSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNGTLFEIHFVNL-TKLSVSSVNENNLT 289 (420)
Q Consensus 211 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~-~~L~~l~l~~~~~~ 289 (420)
+ .+|..++.+++|+.|+|++|.+..+ |..++.+++|+.|++++|.+++.++. .+... ..+..+++++|.+.
T Consensus 283 -----~-~lp~~~~~l~~L~~L~L~~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~~~~~~~~l~l~~N~l~ 354 (727)
T 4b8c_D 283 -----T-SLPAELGSCFQLKYFYFFDNMVTTL-PWEFGNLCNLQFLGVEGNPLEKQFLK-ILTEKSVTGLIFYLRDNRPE 354 (727)
T ss_dssp -----S-SCCSSGGGGTTCSEEECCSSCCCCC-CSSTTSCTTCCCEECTTSCCCSHHHH-HHHHHHHHHHHHHHHHCCCC
T ss_pred -----C-ccChhhcCCCCCCEEECCCCCCCcc-ChhhhcCCCccEEeCCCCccCCCChH-HHhhcchhhhHHhhccCccc
Confidence 2 3355566777777777777777644 55677777777777777777765554 22222 12223555565554
Q ss_pred e
Q 037249 290 L 290 (420)
Q Consensus 290 ~ 290 (420)
.
T Consensus 355 ~ 355 (727)
T 4b8c_D 355 I 355 (727)
T ss_dssp C
T ss_pred C
Confidence 3
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.45 E-value=5.5e-15 Score=123.62 Aligned_cols=132 Identities=17% Similarity=0.126 Sum_probs=81.7
Q ss_pred chhhccCCcEeecCCccccCccchhhhcccCccceEeecCCccceecCCCCCCccceeeecccceeeccccCcccccccc
Q 037249 246 SLNELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLGLRSFYLDLFNNSFSGSISH 325 (420)
Q Consensus 246 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~ 325 (420)
.+..+++|++|++++|.+++ ++ .+..+++|+.|++++|.+.... ..
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~--~~~~l~~L~~L~l~~n~l~~l~-------------------------------~~ 88 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS--SLSGMENLRILSLGRNLIKKIE-------------------------------NL 88 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC--CHHHHTTCCEEEEEEEEECSCS-------------------------------SH
T ss_pred HHhcCCCCCEEECCCCCCcc-cc--ccccCCCCCEEECCCCCccccc-------------------------------ch
Confidence 55556666666666666553 33 4555666666666665543110 00
Q ss_pred c-ccCCccEEEccCCccccCCcccccccccccEEeccCCccccccC-ccccccCCCceEeCCCcccccccchh-------
Q 037249 326 F-CYQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIP-ISLKNCTALMILDVGENEFVGNISTW------- 396 (420)
Q Consensus 326 ~-~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~------- 396 (420)
. .+++|++|++++|++++ ++ .+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|++.+..|..
T Consensus 89 ~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~ 166 (198)
T 1ds9_A 89 DAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYR 166 (198)
T ss_dssp HHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHH
T ss_pred hhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHH
Confidence 0 12567777777777774 33 57777888888888888773222 36777888888888888876654431
Q ss_pred ---hhhcCCCceEEEeecccccc
Q 037249 397 ---FGERFSRVVVLILRSNQFRG 416 (420)
Q Consensus 397 ---l~~~~~~L~~L~l~~~~~~~ 416 (420)
+.. +++|++|+ +++++.
T Consensus 167 ~~~~~~-l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 167 IEVVKR-LPNLKKLD--GMPVDV 186 (198)
T ss_dssp HHHHHH-CSSCSEEC--CGGGTT
T ss_pred HHHHHh-CCCcEEEC--CcccCH
Confidence 443 78888776 666653
No 140
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.45 E-value=8.8e-13 Score=108.03 Aligned_cols=131 Identities=21% Similarity=0.183 Sum_probs=108.8
Q ss_pred CCcEEecccCCCCCCCchhhhhccccCceeecCCCcccCCCCCCCCCCCCccEEEeecccccccccccccCCCcccEEEc
Q 037249 15 HLSYLGLSFNDFQGVQIPRFIGSIRNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENFLWLSGLSFLEQLDL 94 (420)
Q Consensus 15 ~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 94 (420)
..+.++++++.+. .+|..+ .++|++|++++|++....+..+..+++|++|++++|.+.......+..+++|+.|++
T Consensus 8 ~~~~l~~~~~~l~--~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 8 SGTEIRCNSKGLT--SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp ETTEEECCSSCCS--SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEecCCCCc--cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEEC
Confidence 3578899888877 344333 378999999999998666667889999999999999998887777889999999999
Q ss_pred ccccCCCccchhhhhCCCCCCcEEEccCCCCCCCCchhhccCCCCCEEEccCCcCCC
Q 037249 95 CYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDN 151 (420)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 151 (420)
++|.+...+. ..+..+++|++|++++|.+..+++..+..+++|++|++++|.+..
T Consensus 84 ~~N~l~~~~~--~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 84 HENKLQSLPN--GVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CSSCCCCCCT--TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCccccCH--HHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 9999887653 245678999999999999998888777889999999999998753
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.44 E-value=8.9e-15 Score=134.20 Aligned_cols=163 Identities=15% Similarity=0.098 Sum_probs=106.8
Q ss_pred CCCCEEECCCcccccCCccch-hhccCCcEeecCCccccCccchh---hh-cccCccceEeecCCccceecCCCCCCccc
Q 037249 227 KNLDTLDLGNNSIVGLVPLSL-NELSKLRILHLPDNKLNGTLFEI---HF-VNLTKLSVSSVNENNLTLKVNHDWVPPFQ 301 (420)
Q Consensus 227 ~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~---~~-~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ 301 (420)
++|+.|++++|.+.+.....+ ..+++|++|++++|.+++..... .+ ...++|+.|++++|.++......+
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l----- 175 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVL----- 175 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHH-----
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHH-----
Confidence 688889999888875433333 34678888999888886443331 11 245778888888877653211000
Q ss_pred eeeecccceeeccccCcccccccc-cccCCccEEEccCCccccC----CcccccccccccEEeccCCcccccc----Ccc
Q 037249 302 LVQLGLRSFYLDLFNNSFSGSISH-FCYQNLMLLTLSNNKFTGN----LPNSLGSLTSLVSLHLHKNIFSGTI----PIS 372 (420)
Q Consensus 302 ~~~l~~~~~~l~l~~~~~~~~~~~-~~~~~L~~L~l~~~~l~~~----~~~~~~~~~~L~~L~l~~n~~~~~~----~~~ 372 (420)
... ...++|++|++++|.+++. +...+...++|++|++++|.+++.. +..
T Consensus 176 ---------------------~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~ 234 (372)
T 3un9_A 176 ---------------------MEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA 234 (372)
T ss_dssp ---------------------HHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred ---------------------HHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence 000 1246899999999998743 3566777889999999999988543 344
Q ss_pred ccccCCCceEeCCCcccccccchhhhhcC-CC---ceEEE--eeccccc
Q 037249 373 LKNCTALMILDVGENEFVGNISTWFGERF-SR---VVVLI--LRSNQFR 415 (420)
Q Consensus 373 l~~l~~L~~L~l~~n~~~~~~~~~l~~~~-~~---L~~L~--l~~~~~~ 415 (420)
+..+++|++||+++|.+++.+...+.... +. |+.+. +.++.++
T Consensus 235 L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 235 AREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 55679999999999999888887776521 12 66666 6666554
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.41 E-value=7.7e-13 Score=107.44 Aligned_cols=104 Identities=19% Similarity=0.181 Sum_probs=73.9
Q ss_pred eccccCcccccccccccCCccEEEccCCccccCCcccccccccccEEeccCCccccccCccccccCCCceEeCCCccccc
Q 037249 312 LDLFNNSFSGSISHFCYQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVGENEFVG 391 (420)
Q Consensus 312 l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 391 (420)
++++++.++.... ...++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|++++|+++.
T Consensus 14 l~~s~n~l~~ip~-~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~ 92 (170)
T 3g39_A 14 VDCSGKSLASVPT-GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92 (170)
T ss_dssp EECTTSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred EEeCCCCcCccCc-cCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCE
Confidence 4444444444322 123678888888888886667778888888888888888885555567788888888888888875
Q ss_pred ccchhhhhcCCCceEEEeeccccccC
Q 037249 392 NISTWFGERFSRVVVLILRSNQFRGL 417 (420)
Q Consensus 392 ~~~~~l~~~~~~L~~L~l~~~~~~~~ 417 (420)
..+..+.. +++|++|++++|+++..
T Consensus 93 ~~~~~~~~-l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 93 IPRGAFDN-LKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CCTTTTTT-CTTCCEEECCSSCBCTT
T ss_pred eCHHHhcC-CCCCCEEEeCCCCCCCC
Confidence 55545554 88888888888887654
No 143
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.38 E-value=3.5e-11 Score=111.75 Aligned_cols=327 Identities=9% Similarity=0.068 Sum_probs=200.3
Q ss_pred ccCCCC-CCcEEecccCCCCCCCchhhhhccccCceeecCCCc---ccCCCCCCCCCCCCccEEEeeccccccccccccc
Q 037249 9 SLLDLN-HLSYLGLSFNDFQGVQIPRFIGSIRNLRYLNLSDTQ---FVGMIPPPLGNLSNLQSLDLSLNYLYVENFLWLS 84 (420)
Q Consensus 9 ~~~~~~-~L~~L~l~~~~i~~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 84 (420)
+|.+++ .|+.+.+... ++.. -..+|..|.+|+.+.+..+. ++..-..+|..|.+|+.+.+..+ +...+..++.
T Consensus 58 aF~~~~~~L~sI~iP~s-vt~I-g~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~ 134 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDT-VTEI-GSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFH 134 (394)
T ss_dssp TTTTCCSCCCEEEECTT-CCEE-CTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTT
T ss_pred hccCCCCcCEEEEECCC-eeEE-hHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhh
Confidence 688885 5999999765 4422 34568889999999987653 44344577889999998877654 5556677788
Q ss_pred CCCcccEEEcccccCCCccchhhhhCCCCCCcEEEccCCCCCCCCchhhccCCCCCEEEccCCcCCCCCCCCCCCCChhh
Q 037249 85 GLSFLEQLDLCYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPLTISNFSSLTVLDLSFSQFDNSLIPGWGPIPSWL 164 (420)
Q Consensus 85 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l 164 (420)
.+.+|+.+.+... ...... ..+..+..|+.+.+..+ +..+....+.. ..|+.+.+..+-..- -...+
T Consensus 135 ~c~~L~~i~lp~~-~~~I~~--~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~i--------~~~af 201 (394)
T 4gt6_A 135 HCEELDTVTIPEG-VTSVAD--GMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTRI--------GTNAF 201 (394)
T ss_dssp TCTTCCEEECCTT-CCEECT--TTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCEE--------CTTTT
T ss_pred hhcccccccccce-eeeecc--cceecccccccccccce-eeEeccccccc-cceeEEEECCccccc--------ccchh
Confidence 9999999998754 233322 25667899999998764 55555555653 568888886543211 12334
Q ss_pred hhccccccccccCCC-Ccccccccccc-CCcEEeeccCcccceeEEEeecCcccccchhhhhcCCCCCEEECCCcccccC
Q 037249 165 YRLTHFEQLSVADRP-RRIPRSMASLC-NLRTIYLSGCVSKELEILVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVGL 242 (420)
Q Consensus 165 ~~~~~L~~L~l~~~~-~~~~~~~~~~~-~L~~L~l~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 242 (420)
..+..++........ ......+.... ....-............+.+. +.++......+..+..|+.+.+..... .+
T Consensus 202 ~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~~~-~I 279 (394)
T 4gt6_A 202 SECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKMPDSVV-SI 279 (394)
T ss_dssp TTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECCTTCC-EE
T ss_pred hhccccceecccccccccccceeecccccccccccccccccccceEEcC-CcceEcccceeeecccccEEecccccc-ee
Confidence 455555555443332 11111111111 111111111111112222221 123334455677889999999976543 34
Q ss_pred CccchhhccCCcEeecCCccccCccchhhhcccCccceEeecCCccceecCCCCCCccceeeecccceeeccccCccccc
Q 037249 243 VPLSLNELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLGLRSFYLDLFNNSFSGS 322 (420)
Q Consensus 243 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~ 322 (420)
...++.++++|+.+.+... ++ .++...|.+|.+|+.+.+..+ +......+|..+
T Consensus 280 ~~~aF~~c~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C----------------------- 333 (394)
T 4gt6_A 280 GTGAFMNCPALQDIEFSSR-IT-ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGC----------------------- 333 (394)
T ss_dssp CTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC-----------------------
T ss_pred cCcccccccccccccCCCc-cc-ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCC-----------------------
Confidence 4567889999999999743 44 566668999999999998754 444444444443
Q ss_pred ccccccCCccEEEccCCccccCCcccccccccccEEeccCCccccccCccccccCCCceEeCCCccc
Q 037249 323 ISHFCYQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVGENEF 389 (420)
Q Consensus 323 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 389 (420)
.+|+++.+..+ ++.....+|.+|++|+.+++.++... ..++..+..|+.+.+..+.+
T Consensus 334 ------~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 334 ------EQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp ------TTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred ------CCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence 56888888654 55456678999999999999988643 14677788999998877644
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.36 E-value=2.4e-12 Score=104.85 Aligned_cols=104 Identities=18% Similarity=0.171 Sum_probs=71.2
Q ss_pred eeccccCcccccccccccCCccEEEccCCccccCCcccccccccccEEeccCCccccccCccccccCCCceEeCCCcccc
Q 037249 311 YLDLFNNSFSGSISHFCYQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVGENEFV 390 (420)
Q Consensus 311 ~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 390 (420)
.++++++.+..... ...++|++|++++|++++..+..|..+++|+.|++++|++++..+..+..+++|++|++++|++.
T Consensus 16 ~l~~~~n~l~~iP~-~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~ 94 (174)
T 2r9u_A 16 LVNCQNIRLASVPA-GIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK 94 (174)
T ss_dssp EEECCSSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EEEeCCCCCCccCC-CcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccc
Confidence 34444444433322 22367888888888888666777888888888888888887544445677888888888888887
Q ss_pred cccchhhhhcCCCceEEEeecccccc
Q 037249 391 GNISTWFGERFSRVVVLILRSNQFRG 416 (420)
Q Consensus 391 ~~~~~~l~~~~~~L~~L~l~~~~~~~ 416 (420)
...+..+.. +++|++|++++|++..
T Consensus 95 ~l~~~~~~~-l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 95 SIPRGAFDN-LKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCTTTTTT-CTTCSEEECCSSCBCT
T ss_pred eeCHHHhcc-ccCCCEEEeCCCCccc
Confidence 544444554 7888888888887764
No 145
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.36 E-value=1.9e-14 Score=120.39 Aligned_cols=156 Identities=18% Similarity=0.178 Sum_probs=104.2
Q ss_pred CCCCCcEEecccCCCCCC-----CchhhhhccccCceeecCCCcccCCCCCCCCCCCCccEEEeecccccccccccccCC
Q 037249 12 DLNHLSYLGLSFNDFQGV-----QIPRFIGSIRNLRYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENFLWLSGL 86 (420)
Q Consensus 12 ~~~~L~~L~l~~~~i~~~-----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l 86 (420)
....++.++++.+.+.+. .++..+..+++|++|++++|.+.. +| .+..+++|++|++++|.+...+ ..+..+
T Consensus 16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~-~~~~~~ 92 (198)
T 1ds9_A 16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIE-NLDAVA 92 (198)
T ss_dssp HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCS-SHHHHH
T ss_pred hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccccc-chhhcC
Confidence 344555555555554432 233477888888888888888874 56 6778888888888888876443 334556
Q ss_pred CcccEEEcccccCCCccchhhhhCCCCCCcEEEccCCCCCCCCc-hhhccCCCCCEEEccCCcCCCCCCCC---CCCCCh
Q 037249 87 SFLEQLDLCYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPP-LTISNFSSLTVLDLSFSQFDNSLIPG---WGPIPS 162 (420)
Q Consensus 87 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~ 162 (420)
++|+.|++++|.+...+ .+..+++|++|++++|++..++. ..+..+++|++|++++|.+....... ......
T Consensus 93 ~~L~~L~L~~N~l~~l~----~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~ 168 (198)
T 1ds9_A 93 DTLEELWISYNQIASLS----GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIE 168 (198)
T ss_dssp HHCSEEEEEEEECCCHH----HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHH
T ss_pred CcCCEEECcCCcCCcCC----ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHH
Confidence 78888888888887654 35567888888888888876554 45778888888888888764310000 000112
Q ss_pred hhhhcccccccc
Q 037249 163 WLYRLTHFEQLS 174 (420)
Q Consensus 163 ~l~~~~~L~~L~ 174 (420)
.+..+++|+.|+
T Consensus 169 ~~~~l~~L~~Ld 180 (198)
T 1ds9_A 169 VVKRLPNLKKLD 180 (198)
T ss_dssp HHHHCSSCSEEC
T ss_pred HHHhCCCcEEEC
Confidence 366778888776
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.36 E-value=4.2e-14 Score=129.71 Aligned_cols=86 Identities=23% Similarity=0.203 Sum_probs=41.7
Q ss_pred CccEEEccCCccccC----CcccccccccccEEeccCCcccccc----CccccccCCCceEeCCCcccccccchhhhh--
Q 037249 330 NLMLLTLSNNKFTGN----LPNSLGSLTSLVSLHLHKNIFSGTI----PISLKNCTALMILDVGENEFVGNISTWFGE-- 399 (420)
Q Consensus 330 ~L~~L~l~~~~l~~~----~~~~~~~~~~L~~L~l~~n~~~~~~----~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~-- 399 (420)
+|++|++++|.+++. ++..+..+++|++|++++|.+.+.. ++.+..+++|++|++++|.+++.....++.
T Consensus 156 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L 235 (372)
T 3un9_A 156 QITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAA 235 (372)
T ss_dssp CCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHH
T ss_pred ccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHH
Confidence 455555555555421 2233344555555555555554322 333444555555555555555443333322
Q ss_pred -cCCCceEEEeeccccc
Q 037249 400 -RFSRVVVLILRSNQFR 415 (420)
Q Consensus 400 -~~~~L~~L~l~~~~~~ 415 (420)
.+++|++|++++|+++
T Consensus 236 ~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 236 REHPSLELLHLYFNELS 252 (372)
T ss_dssp HHCSSCCEEECTTSSCC
T ss_pred HhCCCCCEEeccCCCCC
Confidence 1355555555555554
No 147
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.20 E-value=8.2e-11 Score=95.72 Aligned_cols=86 Identities=26% Similarity=0.223 Sum_probs=46.0
Q ss_pred CCccEEEeecccccccccccccCCCcccEEEcccccCCCccchhhhhCCCCCCcEEEccCCCCCCCCchhhccCCCCCEE
Q 037249 63 SNLQSLDLSLNYLYVENFLWLSGLSFLEQLDLCYVNLSKASDWLLVANTLPSLVELRLSNCQLHHLPPLTISNFSSLTVL 142 (420)
Q Consensus 63 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 142 (420)
++|++|++++|.+....+..+.++++|+.|++++|.+...+. ..+..+++|++|++++|++..+++..+..+++|++|
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~--~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L 110 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPT--GVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHI 110 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEE
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccCh--hHhCCcchhhEEECCCCccceeCHHHhccccCCCEE
Confidence 344444444444444433344444444444444444444332 123456666666666666666665556666777777
Q ss_pred EccCCcCC
Q 037249 143 DLSFSQFD 150 (420)
Q Consensus 143 ~l~~~~~~ 150 (420)
++++|.+.
T Consensus 111 ~L~~N~~~ 118 (174)
T 2r9u_A 111 YLYNNPWD 118 (174)
T ss_dssp ECCSSCBC
T ss_pred EeCCCCcc
Confidence 77777664
No 148
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.20 E-value=1.1e-10 Score=94.69 Aligned_cols=104 Identities=25% Similarity=0.236 Sum_probs=58.9
Q ss_pred ceeecCCCcccCCCCCCCCCCCCccEEEeecccccccccccccCCCcccEEEcccccCCCccchhhhhCCCCCCcEEEcc
Q 037249 42 RYLNLSDTQFVGMIPPPLGNLSNLQSLDLSLNYLYVENFLWLSGLSFLEQLDLCYVNLSKASDWLLVANTLPSLVELRLS 121 (420)
Q Consensus 42 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 121 (420)
++++++++.++ .+|..+ .++|++|++++|.+.......+..+++|++|++++|.+...+. ..+..+++|++|+++
T Consensus 12 ~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~--~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPA--GVFDKLTQLTQLSLN 86 (170)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT--TTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccCh--hhccCCCCCCEEECC
Confidence 44445444444 233333 2445555555555544444444555555555555555554432 234556777777777
Q ss_pred CCCCCCCCchhhccCCCCCEEEccCCcCC
Q 037249 122 NCQLHHLPPLTISNFSSLTVLDLSFSQFD 150 (420)
Q Consensus 122 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 150 (420)
+|++..+++..+..+++|++|++++|++.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 77777766666777777777777777764
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.10 E-value=1.6e-10 Score=105.05 Aligned_cols=199 Identities=11% Similarity=0.137 Sum_probs=122.7
Q ss_pred ccccccCCcEEeeccCcccceeEEEeecCcccccchhhhhcCCCCCEEECCCcccccCCccchhhccCCcEeecCCcccc
Q 037249 185 SMASLCNLRTIYLSGCVSKELEILVLQSSSISGHLTEQIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKLN 264 (420)
Q Consensus 185 ~~~~~~~L~~L~l~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 264 (420)
.+..+++|+.|.+........ .++.+. .+.+...+..+|+|+.|.++++.-... +. + .+++|++|++..|.++
T Consensus 134 s~~~l~~L~~L~l~~~~~e~~---~is~~~-~~~L~~ll~~~P~L~~L~L~g~~~l~l-~~-~-~~~~L~~L~L~~~~l~ 206 (362)
T 2ra8_A 134 NKEKFAHFEGLFWGDIDFEEQ---EISWIE-QVDLSPVLDAMPLLNNLKIKGTNNLSI-GK-K-PRPNLKSLEIISGGLP 206 (362)
T ss_dssp THHHHTTCSEEEECCCCTTTC---CGGGCB-CCBCHHHHHTCTTCCEEEEECCBTCBC-CS-C-BCTTCSEEEEECSBCC
T ss_pred hhhhcchhhheeecCcchhhc---cccccc-ccCHHHHHhcCCCCcEEEEeCCCCcee-cc-c-cCCCCcEEEEecCCCC
Confidence 344566777777754322110 000000 123556677889999999988732222 22 3 3789999999988876
Q ss_pred Cccchhhh--cccCccceEeecCCccceecCCCCCCccceeeecccceeeccccCcccccccccccCCccEEEccCCccc
Q 037249 265 GTLFEIHF--VNLTKLSVSSVNENNLTLKVNHDWVPPFQLVQLGLRSFYLDLFNNSFSGSISHFCYQNLMLLTLSNNKFT 342 (420)
Q Consensus 265 ~~~~~~~~--~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 342 (420)
..... .+ ..+|+|+.|+++.+.......... . .+........+++|+.|++++|.++
T Consensus 207 ~~~l~-~l~~~~lp~L~~L~L~~~~~~~~~~~~~---~-----------------~l~~~l~~~~~p~Lr~L~L~~~~i~ 265 (362)
T 2ra8_A 207 DSVVE-DILGSDLPNLEKLVLYVGVEDYGFDGDM---N-----------------VFRPLFSKDRFPNLKWLGIVDAEEQ 265 (362)
T ss_dssp HHHHH-HHHHSBCTTCCEEEEECBCGGGTCCSCG---G-----------------GTGGGSCTTTCTTCCEEEEESCTTH
T ss_pred hHHHH-HHHHccCCCCcEEEEeccccccccchhH---H-----------------HHHHHHhcCCCCCcCEEeCCCCCCc
Confidence 44333 23 368999999885321100000000 0 0001111123689999999999987
Q ss_pred cCCcccc---cccccccEEeccCCccccc----cCccccccCCCceEeCCCcccccccchhhhhcCCCceEEEeeccc
Q 037249 343 GNLPNSL---GSLTSLVSLHLHKNIFSGT----IPISLKNCTALMILDVGENEFVGNISTWFGERFSRVVVLILRSNQ 413 (420)
Q Consensus 343 ~~~~~~~---~~~~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~~L~~L~l~~~~ 413 (420)
+..+..+ ..+++|+.|+|+.|.+.+. ++..+..+++|+.|++++|.+++.....+.+.+ ...+++++++
T Consensus 266 ~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 266 NVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred hHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 5333333 3578999999999998864 344556789999999999999888777777644 3557777664
No 150
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.10 E-value=1.6e-08 Score=93.24 Aligned_cols=59 Identities=20% Similarity=0.267 Sum_probs=41.8
Q ss_pred cCCccEEEccCCccccCCcccccccccccEEeccCCccccccCccccccCCCceEeCCCc
Q 037249 328 YQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVGEN 387 (420)
Q Consensus 328 ~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 387 (420)
+.+|+.+.+.++.++.....+|.++.+|+.+.+..+ ++.....+|..|.+|+++.+..+
T Consensus 285 c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 285 CSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp CTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred ccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 357777888777776555677888888888888654 44345567778888888887654
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.06 E-value=3.3e-10 Score=103.26 Aligned_cols=103 Identities=18% Similarity=0.114 Sum_probs=78.9
Q ss_pred eccccC-cccccccccccCCccEEEccC-CccccCCcccccccccccEEeccCCccccccCccccccCCCceEeCCCccc
Q 037249 312 LDLFNN-SFSGSISHFCYQNLMLLTLSN-NKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVGENEF 389 (420)
Q Consensus 312 l~l~~~-~~~~~~~~~~~~~L~~L~l~~-~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 389 (420)
++.+++ .++.......+.+|++|+|++ |.+++..+..|..+++|+.|+|++|.+++..|..|..+++|+.|+|++|++
T Consensus 13 v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 92 (347)
T 2ifg_A 13 LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92 (347)
T ss_dssp EECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred EEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc
Confidence 445555 555544422446799999996 999877778899999999999999999977788889999999999999999
Q ss_pred ccccchhhhhcCCCceEEEeecccccc
Q 037249 390 VGNISTWFGERFSRVVVLILRSNQFRG 416 (420)
Q Consensus 390 ~~~~~~~l~~~~~~L~~L~l~~~~~~~ 416 (420)
+. +|......++ |+.|++.+|++..
T Consensus 93 ~~-~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 93 ES-LSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SC-CCSTTTCSCC-CCEEECCSSCCCC
T ss_pred ce-eCHHHcccCC-ceEEEeeCCCccC
Confidence 85 4444444355 9999999998863
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.05 E-value=6.8e-09 Score=95.76 Aligned_cols=124 Identities=11% Similarity=0.141 Sum_probs=68.4
Q ss_pred hhhcCCCCCEEECCCcccccCCccchhhccCCcEeecCCccccCccchhhhcccCccceEeecCCccceecCCCCCCccc
Q 037249 222 QIGHFKNLDTLDLGNNSIVGLVPLSLNELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLKVNHDWVPPFQ 301 (420)
Q Consensus 222 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ 301 (420)
.+..+..|+.+.+..+ +..+...++.++.+|+.+.+..+ ++ .+....|.+|++|+.+.+.++.+.......|..
T Consensus 235 ~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~--- 308 (379)
T 4h09_A 235 AFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMD--- 308 (379)
T ss_dssp TTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEECCTTCCEECTTTTTT---
T ss_pred cccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-eccccccccccccccccccccccceehhhhhcC---
Confidence 3444455555555443 23233344455555555555433 22 333334555555555555554444444434433
Q ss_pred eeeecccceeeccccCcccccccccccCCccEEEccCCccccCCcccccccccccEEeccCCccccccCccccccCCC
Q 037249 302 LVQLGLRSFYLDLFNNSFSGSISHFCYQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTAL 379 (420)
Q Consensus 302 ~~~l~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L 379 (420)
+.+|+.+.+..+ ++.....+|.+|.+|+++.+..+ ++.....+|..+..+
T Consensus 309 --------------------------c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~ 358 (379)
T 4h09_A 309 --------------------------CVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSIT 358 (379)
T ss_dssp --------------------------CTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSCC
T ss_pred --------------------------CCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCCC
Confidence 356778877654 55455678999999999999765 554555677766543
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.92 E-value=1.5e-09 Score=98.64 Aligned_cols=164 Identities=12% Similarity=0.076 Sum_probs=101.6
Q ss_pred hhhcCCCCCEEECCCccccc---------CCccchhhccCCcEeecCCccccCccchhhhcccCccceEeecCCccceec
Q 037249 222 QIGHFKNLDTLDLGNNSIVG---------LVPLSLNELSKLRILHLPDNKLNGTLFEIHFVNLTKLSVSSVNENNLTLKV 292 (420)
Q Consensus 222 ~l~~~~~L~~L~l~~~~~~~---------~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~L~~l~l~~~~~~~~~ 292 (420)
....+++|+.|.+....... .+...+..+|+|+.|.+++|.-. .++ .+ .+++|+.|++..+.+....
T Consensus 134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~--~~-~~~~L~~L~L~~~~l~~~~ 209 (362)
T 2ra8_A 134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIG--KK-PRPNLKSLEIISGGLPDSV 209 (362)
T ss_dssp THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCC--SC-BCTTCSEEEEECSBCCHHH
T ss_pred hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eec--cc-cCCCCcEEEEecCCCChHH
Confidence 34566788888876542211 12233455677888887766311 111 12 2667777776655443211
Q ss_pred CCCCCCccceeeecccceeeccccCcccccccccccCCccEEEccCC--ccc-c----CCcccc--cccccccEEeccCC
Q 037249 293 NHDWVPPFQLVQLGLRSFYLDLFNNSFSGSISHFCYQNLMLLTLSNN--KFT-G----NLPNSL--GSLTSLVSLHLHKN 363 (420)
Q Consensus 293 ~~~~~~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~--~l~-~----~~~~~~--~~~~~L~~L~l~~n 363 (420)
. ..+....+++|++|+|+.+ ... + .+...+ ..+++|+.|++++|
T Consensus 210 l---------------------------~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~ 262 (362)
T 2ra8_A 210 V---------------------------EDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA 262 (362)
T ss_dssp H---------------------------HHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC
T ss_pred H---------------------------HHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC
Confidence 0 0011113588999998632 211 1 111222 35899999999999
Q ss_pred ccccccCcccc---ccCCCceEeCCCcccccccchhhhh---cCCCceEEEeecccccc
Q 037249 364 IFSGTIPISLK---NCTALMILDVGENEFVGNISTWFGE---RFSRVVVLILRSNQFRG 416 (420)
Q Consensus 364 ~~~~~~~~~l~---~l~~L~~L~l~~n~~~~~~~~~l~~---~~~~L~~L~l~~~~~~~ 416 (420)
.+.+..+..+. .+++|++|+|+.|.+.+.++..+.. ++++|+.|++++|.++.
T Consensus 263 ~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 263 EEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp TTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 98755544443 5789999999999999877666543 37999999999998864
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.90 E-value=6.2e-10 Score=88.98 Aligned_cols=84 Identities=8% Similarity=0.054 Sum_probs=71.2
Q ss_pred CCccEEEccCCccccCCcccccccccccEEeccCCc-cccccCcccccc----CCCceEeCCCc-ccccccchhhhhcCC
Q 037249 329 QNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNI-FSGTIPISLKNC----TALMILDVGEN-EFVGNISTWFGERFS 402 (420)
Q Consensus 329 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~l~~l----~~L~~L~l~~n-~~~~~~~~~l~~~~~ 402 (420)
..|+.||+++|.+++.....+..+++|++|+|++|. +++.....+... ++|++|+|++| ++++.+...+.+ ++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~-~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH-FR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG-CT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc-CC
Confidence 469999999999987767778899999999999995 877666677663 58999999998 499988888886 89
Q ss_pred CceEEEeeccc
Q 037249 403 RVVVLILRSNQ 413 (420)
Q Consensus 403 ~L~~L~l~~~~ 413 (420)
+|++|++++|+
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 99999999996
No 155
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.88 E-value=2.6e-09 Score=97.35 Aligned_cols=106 Identities=22% Similarity=0.163 Sum_probs=85.5
Q ss_pred cEEecccC-CCCCCCchhhhhccccCceeecCC-CcccCCCCCCCCCCCCccEEEeecccccccccccccCCCcccEEEc
Q 037249 17 SYLGLSFN-DFQGVQIPRFIGSIRNLRYLNLSD-TQFVGMIPPPLGNLSNLQSLDLSLNYLYVENFLWLSGLSFLEQLDL 94 (420)
Q Consensus 17 ~~L~l~~~-~i~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 94 (420)
..++++++ .++ .+|. +..+.+|++|++++ |.+....+..|..+++|++|+|++|.+....+..|.++++|+.|+|
T Consensus 11 ~~v~~~~~n~l~--~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 11 SGLRCTRDGALD--SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp SCEECCSSCCCT--TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred CEEEcCCCCCCC--ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence 35688877 777 5777 88888999999986 8888666678899999999999999998888888899999999999
Q ss_pred ccccCCCccchhhhhCCCCCCcEEEccCCCCCCC
Q 037249 95 CYVNLSKASDWLLVANTLPSLVELRLSNCQLHHL 128 (420)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 128 (420)
++|.+...+.. .+..++ |+.|++.+|.+...
T Consensus 88 ~~N~l~~~~~~--~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 88 SFNALESLSWK--TVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp CSSCCSCCCST--TTCSCC-CCEEECCSSCCCCC
T ss_pred CCCccceeCHH--HcccCC-ceEEEeeCCCccCC
Confidence 99998877532 333344 99999999988643
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.77 E-value=3.3e-09 Score=87.07 Aligned_cols=64 Identities=22% Similarity=0.262 Sum_probs=38.7
Q ss_pred CCccEEEccCCccccC----CcccccccccccEEec--cCCcccccc----CccccccCCCceEeCCCcccccc
Q 037249 329 QNLMLLTLSNNKFTGN----LPNSLGSLTSLVSLHL--HKNIFSGTI----PISLKNCTALMILDVGENEFVGN 392 (420)
Q Consensus 329 ~~L~~L~l~~~~l~~~----~~~~~~~~~~L~~L~l--~~n~~~~~~----~~~l~~l~~L~~L~l~~n~~~~~ 392 (420)
++|++|+|++|.+++. +..++...++|++|++ ++|.+.... .+.+...++|++|++++|.+.+.
T Consensus 93 ~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~ 166 (185)
T 1io0_A 93 NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR 166 (185)
T ss_dssp SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred CCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence 4577777777777632 3445566666777777 666666432 33444556677777777766543
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.59 E-value=7.2e-09 Score=85.01 Aligned_cols=118 Identities=15% Similarity=0.106 Sum_probs=74.8
Q ss_pred hhhhccccCceeecCCC-cccCC----CCCCCCCCCCccEEEeeccccccccccc----ccCCCcccEEEcccccCCCc-
Q 037249 33 RFIGSIRNLRYLNLSDT-QFVGM----IPPPLGNLSNLQSLDLSLNYLYVENFLW----LSGLSFLEQLDLCYVNLSKA- 102 (420)
Q Consensus 33 ~~~~~l~~L~~L~l~~~-~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~----~~~l~~L~~L~l~~~~~~~~- 102 (420)
..+...+.|++|++++| .+... +...+...++|++|++++|.+...+... +...+.|++|++++|.+...
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 34455677788888777 66432 3344566677888888888776654433 33456777777777777654
Q ss_pred -cchhhhhCCCCCCcEEEc--cCCCCCCCCch----hhccCCCCCEEEccCCcCC
Q 037249 103 -SDWLLVANTLPSLVELRL--SNCQLHHLPPL----TISNFSSLTVLDLSFSQFD 150 (420)
Q Consensus 103 -~~~~~~~~~~~~L~~L~l--~~~~~~~~~~~----~l~~~~~L~~L~l~~~~~~ 150 (420)
..+...+...+.|++|++ ++|.+.+.... .+...++|++|++++|.+.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 223445566777888888 67777654322 3344577888888777663
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.46 E-value=1.4e-07 Score=75.31 Aligned_cols=85 Identities=19% Similarity=0.318 Sum_probs=59.6
Q ss_pred CCccEEEeecccccccccccccCCCcccEEEcccccCCCccchhhhhCC----CCCCcEEEccCCC-CCCCCchhhccCC
Q 037249 63 SNLQSLDLSLNYLYVENFLWLSGLSFLEQLDLCYVNLSKASDWLLVANT----LPSLVELRLSNCQ-LHHLPPLTISNFS 137 (420)
Q Consensus 63 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~-~~~~~~~~l~~~~ 137 (420)
.+|++||++++.++..+...+..+++|+.|++++|...++..+ ..+.. +++|++|++++|. +++.....+.+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL-~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCL-ERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHH-HHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHH-HHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 4688888888877777777777788888888888764444332 23333 3468888888874 7666655667788
Q ss_pred CCCEEEccCCc
Q 037249 138 SLTVLDLSFSQ 148 (420)
Q Consensus 138 ~L~~L~l~~~~ 148 (420)
+|++|+++++.
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 88888888775
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.39 E-value=3.7e-07 Score=78.67 Aligned_cols=80 Identities=23% Similarity=0.272 Sum_probs=63.4
Q ss_pred ccCCccEEEccCCcccc--CCcccccccccccEEeccCCccccccCccccccC--CCceEeCCCcccccccch------h
Q 037249 327 CYQNLMLLTLSNNKFTG--NLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCT--ALMILDVGENEFVGNIST------W 396 (420)
Q Consensus 327 ~~~~L~~L~l~~~~l~~--~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~--~L~~L~l~~n~~~~~~~~------~ 396 (420)
.+++|++|+|++|++++ .++..+..+++|+.|+|++|.+.+. ..+..+. +|++|++++|++.+..|. .
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 46899999999999986 3456777999999999999999844 3445555 999999999999876552 2
Q ss_pred hhhcCCCceEEE
Q 037249 397 FGERFSRVVVLI 408 (420)
Q Consensus 397 l~~~~~~L~~L~ 408 (420)
+...+|+|+.|+
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 344599999886
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.22 E-value=1.1e-06 Score=75.77 Aligned_cols=68 Identities=19% Similarity=0.277 Sum_probs=56.1
Q ss_pred ccccccccEEeccCCcccc--ccCccccccCCCceEeCCCcccccccchhhhhcCC--CceEEEeeccccccCCC
Q 037249 349 LGSLTSLVSLHLHKNIFSG--TIPISLKNCTALMILDVGENEFVGNISTWFGERFS--RVVVLILRSNQFRGLLP 419 (420)
Q Consensus 349 ~~~~~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~~~~--~L~~L~l~~~~~~~~~~ 419 (420)
..++++|+.|+|++|.+.+ .++..+..+++|+.|+|++|.+.+. +.+.. +. +|++|++++|++++.+|
T Consensus 166 ~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~-l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 166 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDK-IKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGG-GTTSCCSEEECTTSTTGGGCS
T ss_pred HhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhh-cccCCcceEEccCCcCccccC
Confidence 3678999999999999986 4456778999999999999999865 22332 43 99999999999998776
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.81 E-value=1.1e-05 Score=65.65 Aligned_cols=85 Identities=9% Similarity=0.099 Sum_probs=41.0
Q ss_pred CCccEEEccCCcccc----CCcccccccccccEEeccCCcccccc----CccccccCCCceEeCCCc---ccccccchhh
Q 037249 329 QNLMLLTLSNNKFTG----NLPNSLGSLTSLVSLHLHKNIFSGTI----PISLKNCTALMILDVGEN---EFVGNISTWF 397 (420)
Q Consensus 329 ~~L~~L~l~~~~l~~----~~~~~~~~~~~L~~L~l~~n~~~~~~----~~~l~~l~~L~~L~l~~n---~~~~~~~~~l 397 (420)
..|+.|+|++|++++ .+.+++.....|++|+|++|.|.... .+++...+.|++|++++| .+.+.+...+
T Consensus 70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~i 149 (197)
T 1pgv_A 70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDM 149 (197)
T ss_dssp SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHH
T ss_pred CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHH
Confidence 456666666666552 22334445555666666666655322 233344455666666543 3333322222
Q ss_pred hh---cCCCceEEEeeccc
Q 037249 398 GE---RFSRVVVLILRSNQ 413 (420)
Q Consensus 398 ~~---~~~~L~~L~l~~~~ 413 (420)
++ .-+.|+.|+++.|.
T Consensus 150 a~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 150 MMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHCSSCCEEECCCCC
T ss_pred HHHHHhCCCcCeEeccCCC
Confidence 21 13556666655544
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.78 E-value=1.6e-05 Score=64.69 Aligned_cols=62 Identities=15% Similarity=0.205 Sum_probs=48.3
Q ss_pred CCccEEEccCCcccc----CCcccccccccccEEeccCCc---ccc----ccCccccccCCCceEeCCCcccc
Q 037249 329 QNLMLLTLSNNKFTG----NLPNSLGSLTSLVSLHLHKNI---FSG----TIPISLKNCTALMILDVGENEFV 390 (420)
Q Consensus 329 ~~L~~L~l~~~~l~~----~~~~~~~~~~~L~~L~l~~n~---~~~----~~~~~l~~l~~L~~L~l~~n~~~ 390 (420)
..|++|+|++|.|++ .+.+++.....|++|+|++|. +.. .+.+.+...++|+.|+++.|.+.
T Consensus 98 ~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 98 PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred CccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 579999999999984 344667778889999998763 342 24456678899999999988664
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.77 E-value=0.0026 Score=48.16 Aligned_cols=56 Identities=23% Similarity=0.271 Sum_probs=36.9
Q ss_pred eeccccCccc-ccccccccCCccEEEccCCccccCCcccccccccccEEeccCCccc
Q 037249 311 YLDLFNNSFS-GSISHFCYQNLMLLTLSNNKFTGNLPNSLGSLTSLVSLHLHKNIFS 366 (420)
Q Consensus 311 ~l~l~~~~~~-~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~~~ 366 (420)
.++.+++.++ ..+|....++|++|+|++|+|+...+..|..+++|+.|+|.+|++.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4666666665 2333333456777888888777555666777777777777777664
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.62 E-value=0.0031 Score=47.67 Aligned_cols=58 Identities=22% Similarity=0.269 Sum_probs=46.1
Q ss_pred cEEEccCCccc-cCCcccccccccccEEeccCCccccccCccccccCCCceEeCCCccccc
Q 037249 332 MLLTLSNNKFT-GNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVGENEFVG 391 (420)
Q Consensus 332 ~~L~l~~~~l~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 391 (420)
.+++.++++++ ..+|..+. ++|+.|+|++|.++...+..|..+++|++|+|++|++..
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 47888888886 34554443 579999999999996666678899999999999997753
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=75.30 E-value=3.4 Score=29.07 Aligned_cols=47 Identities=19% Similarity=0.147 Sum_probs=32.1
Q ss_pred ccccCCcccccccccccEEeccCCccccccCccccccCCCceEeCCCc
Q 037249 340 KFTGNLPNSLGSLTSLVSLHLHKNIFSGTIPISLKNCTALMILDVGEN 387 (420)
Q Consensus 340 ~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 387 (420)
.++..-..+|.+|.+|+++.|..+- +.....+|..|.+|+.+.+.+.
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~v-~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPNI-GLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTTS-SCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCch-heEcHHHHhccCCccEEEEcCC
Confidence 3444455677788888888887653 3255667778888888887654
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=68.12 E-value=6.8 Score=27.45 Aligned_cols=38 Identities=18% Similarity=0.141 Sum_probs=17.5
Q ss_pred CCCCCCCCccEEEeecccccccccccccCCCcccEEEcc
Q 037249 57 PPLGNLSNLQSLDLSLNYLYVENFLWLSGLSFLEQLDLC 95 (420)
Q Consensus 57 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 95 (420)
.+|.+|..|+.+.+..+ +..++..+|..|.+|+.+.+.
T Consensus 14 ~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred HHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 44555555555555432 233334444444444444443
Done!