BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037250
(277 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|296081887|emb|CBI20892.3| unnamed protein product [Vitis vinifera]
Length = 293
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 196/283 (69%), Positives = 224/283 (79%), Gaps = 23/283 (8%)
Query: 1 MAQFQFQLA----TVK--PHHSFSFMPIAPLSISHKPFNFLPKSSTIKCLSNSPKLNLPI 54
M QFQ LA T+K P S S +PI + F+ LP SS+++ P LPI
Sbjct: 1 MGQFQQLLAHRPCTIKLMPMPSASLLPI------NAAFSKLPTSSSLRF--TPPTRLLPI 52
Query: 55 KLRPLRHPSLTLRSRLVCNMSGSDMISQLELDKPEERRKPKKSVNGVFWIILLNLGLYVA 114
P SR VC M+GSD+ SQ+EL K + KP++ VNG+FWIILLNLG++VA
Sbjct: 53 SAAP---------SRFVCKMNGSDLTSQMELGKSGGKWKPQRQVNGIFWIILLNLGIFVA 103
Query: 115 DHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGL 174
DH+FQVR+IK+LYLYHN+PAWYQFVTA FCHANWNHLSSNLFFLYIFG+LVEEEEGNFGL
Sbjct: 104 DHLFQVRAIKTLYLYHNWPAWYQFVTATFCHANWNHLSSNLFFLYIFGRLVEEEEGNFGL 163
Query: 175 WLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQF 234
WLSYI TGA AN VSWL+LP+NAVSVGASGAVFGLFAISVLVK+SWDWRKILEVLILGQF
Sbjct: 164 WLSYILTGAGANLVSWLVLPRNAVSVGASGAVFGLFAISVLVKISWDWRKILEVLILGQF 223
Query: 235 VVEKVMEAAQASAGMSGTFIGGYSVQSINHIAHLSGALFGVFL 277
V+EKVMEAAQAS G+SGTF+GGYS+QSINHIAHLSGAL GV L
Sbjct: 224 VIEKVMEAAQASTGLSGTFLGGYSIQSINHIAHLSGALIGVLL 266
>gi|255551048|ref|XP_002516572.1| conserved hypothetical protein [Ricinus communis]
gi|223544392|gb|EEF45913.1| conserved hypothetical protein [Ricinus communis]
Length = 308
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 186/245 (75%), Positives = 203/245 (82%), Gaps = 3/245 (1%)
Query: 35 LPKSSTIKCLSNS-PKLNLPIKLRPLRHPSL-TLRSRLVCNMSGSDMISQLELDKPEERR 92
+P +S I+ S S PK N P P PS L SR VC MSGSDMI LELDKPE RR
Sbjct: 40 VPMASHIRPFSMSLPKTNFP-AYPPCLLPSFPALHSRFVCKMSGSDMIRPLELDKPEGRR 98
Query: 93 KPKKSVNGVFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLS 152
KP+K NG+FWIILLNLG+YVADH FQVR IKSLYLYHN P WYQF++A FCHA+W HLS
Sbjct: 99 KPQKQANGIFWIILLNLGIYVADHFFQVRGIKSLYLYHNRPTWYQFISATFCHASWEHLS 158
Query: 153 SNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFAI 212
SNLFFLYIFGKLVEEEEGNF LWLSYI TG AN VSWL+LP+NAVSVGASGAVFGLFAI
Sbjct: 159 SNLFFLYIFGKLVEEEEGNFALWLSYILTGVGANLVSWLVLPRNAVSVGASGAVFGLFAI 218
Query: 213 SVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQSINHIAHLSGAL 272
SVLVK++WDWRKILEVLILGQFV+EKVMEAAQASA +SGTF GGY +QS+NHIAHLSGAL
Sbjct: 219 SVLVKITWDWRKILEVLILGQFVIEKVMEAAQASAALSGTFRGGYPMQSVNHIAHLSGAL 278
Query: 273 FGVFL 277
GV L
Sbjct: 279 IGVVL 283
>gi|22327066|ref|NP_680221.1| rhomboid-like protein 11 [Arabidopsis thaliana]
gi|30102632|gb|AAP21234.1| At5g25752 [Arabidopsis thaliana]
gi|110736074|dbj|BAF00010.1| hypothetical protein [Arabidopsis thaliana]
gi|332006096|gb|AED93479.1| rhomboid-like protein 11 [Arabidopsis thaliana]
Length = 280
Score = 367 bits (941), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 175/240 (72%), Positives = 197/240 (82%), Gaps = 4/240 (1%)
Query: 32 FNFLPKSSTIKCLSNSPKLNLPIKLRPLRHPSLTLRSRLVCNMSGSDMISQLELDKPEER 91
F F P S + P++ RPL RS++ C S SD+ Q ELDK ++
Sbjct: 19 FRFPPLHRRRAASSPTNSTQPPLQFRPL----TVSRSQITCRFSQSDITPQFELDKAKDN 74
Query: 92 RKPKKSVNGVFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHL 151
RKP+K NG+FWIIL+NLG+Y+ADH FQVR IKSLYLYHNFPAWYQFVTA FCHANWNHL
Sbjct: 75 RKPQKRANGIFWIILINLGIYLADHFFQVRGIKSLYLYHNFPAWYQFVTATFCHANWNHL 134
Query: 152 SSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFA 211
SSNLFFLYIFGKLVEEEEGNFGLWLSY+FTG AN VSWL+LP+NAVSVGASGAVFGLFA
Sbjct: 135 SSNLFFLYIFGKLVEEEEGNFGLWLSYLFTGVGANLVSWLVLPRNAVSVGASGAVFGLFA 194
Query: 212 ISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQSINHIAHLSGA 271
ISVLVKMSWDWRKILEVLILGQFV+E+VMEAAQASAG+SGT GGYS+Q++NHIAHLSGA
Sbjct: 195 ISVLVKMSWDWRKILEVLILGQFVIERVMEAAQASAGLSGTIYGGYSLQTVNHIAHLSGA 254
>gi|297812787|ref|XP_002874277.1| rhomboid family protein [Arabidopsis lyrata subsp. lyrata]
gi|297320114|gb|EFH50536.1| rhomboid family protein [Arabidopsis lyrata subsp. lyrata]
Length = 281
Score = 365 bits (938), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 172/210 (81%), Positives = 190/210 (90%), Gaps = 1/210 (0%)
Query: 63 SLTL-RSRLVCNMSGSDMISQLELDKPEERRKPKKSVNGVFWIILLNLGLYVADHVFQVR 121
SLT+ RS++ C S SD+ Q ELDK ++ RKP+K NG+FWIIL+NLG+YVADH FQVR
Sbjct: 44 SLTVSRSQITCRFSQSDITPQFELDKAQDNRKPQKRANGIFWIILINLGIYVADHFFQVR 103
Query: 122 SIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFT 181
IKSLYLYHNFPAWYQFVTA FCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSY+FT
Sbjct: 104 GIKSLYLYHNFPAWYQFVTATFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYLFT 163
Query: 182 GAAANFVSWLILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVME 241
G AN VSWL+LP+NAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVE+VME
Sbjct: 164 GVGANLVSWLVLPRNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVERVME 223
Query: 242 AAQASAGMSGTFIGGYSVQSINHIAHLSGA 271
AAQASAG+SGT GGYS+Q++NHIAHLSGA
Sbjct: 224 AAQASAGLSGTIYGGYSLQTVNHIAHLSGA 253
>gi|225430025|ref|XP_002281548.1| PREDICTED: putative rhomboid protease ydcA-like [Vitis vinifera]
Length = 222
Score = 347 bits (891), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 163/195 (83%), Positives = 182/195 (93%)
Query: 83 LELDKPEERRKPKKSVNGVFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAA 142
+EL K + KP++ VNG+FWIILLNLG++VADH+FQVR+IK+LYLYHN+PAWYQFVTA
Sbjct: 1 MELGKSGGKWKPQRQVNGIFWIILLNLGIFVADHLFQVRAIKTLYLYHNWPAWYQFVTAT 60
Query: 143 FCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGA 202
FCHANWNHLSSNLFFLYIFG+LVEEEEGNFGLWLSYI TGA AN VSWL+LP+NAVSVGA
Sbjct: 61 FCHANWNHLSSNLFFLYIFGRLVEEEEGNFGLWLSYILTGAGANLVSWLVLPRNAVSVGA 120
Query: 203 SGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQSI 262
SGAVFGLFAISVLVK+SWDWRKILEVLILGQFV+EKVMEAAQAS G+SGTF+GGYS+QSI
Sbjct: 121 SGAVFGLFAISVLVKISWDWRKILEVLILGQFVIEKVMEAAQASTGLSGTFLGGYSIQSI 180
Query: 263 NHIAHLSGALFGVFL 277
NHIAHLSGAL GV L
Sbjct: 181 NHIAHLSGALIGVLL 195
>gi|224141791|ref|XP_002324247.1| predicted protein [Populus trichocarpa]
gi|222865681|gb|EEF02812.1| predicted protein [Populus trichocarpa]
Length = 226
Score = 346 bits (887), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 162/194 (83%), Positives = 178/194 (91%)
Query: 78 DMISQLELDKPEERRKPKKSVNGVFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQ 137
DM QLEL KPEERRKP+K VNG+FWIIL+NLG++VADH+FQVR IKSLYLYHN+PAWYQ
Sbjct: 1 DMTRQLELGKPEERRKPEKRVNGIFWIILINLGMFVADHIFQVRHIKSLYLYHNWPAWYQ 60
Query: 138 FVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNA 197
FVTA FCHA+W HLSSNLFFLYIFGKLVEEEEGNF LWLSYI TG AN VSWL+LP+NA
Sbjct: 61 FVTATFCHASWEHLSSNLFFLYIFGKLVEEEEGNFALWLSYILTGVGANLVSWLVLPRNA 120
Query: 198 VSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGY 257
VSVGASGAVFGLFAISVLVK++WDWRKILEVLILGQFV+EKVMEAAQASA M+G F GGY
Sbjct: 121 VSVGASGAVFGLFAISVLVKITWDWRKILEVLILGQFVIEKVMEAAQASAAMTGPFRGGY 180
Query: 258 SVQSINHIAHLSGA 271
VQ++NHIAHLSGA
Sbjct: 181 PVQTVNHIAHLSGA 194
>gi|359811335|ref|NP_001240965.1| uncharacterized protein LOC100781449 [Glycine max]
gi|255635279|gb|ACU17993.1| unknown [Glycine max]
Length = 281
Score = 332 bits (852), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 166/245 (67%), Positives = 194/245 (79%), Gaps = 8/245 (3%)
Query: 30 KPFNFLPKSSTIKCLSNSPKLNLPIKLRPLRHPSLTLRSRLV---CNMSGSDMISQLELD 86
KPF+ LP ++ + P LN +L R + CN + SD++SQLEL
Sbjct: 22 KPFHSLP---PLRTFTPKPSLNAKSHHHHHPLLTLLRSHRTLAPCCNSNKSDIMSQLELG 78
Query: 87 KPEERRKPKKSVNGVFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHA 146
KPE++ KP+K VNG+FWIILLN+ ++VADH F+V IK+LYLYHN+P+WYQFVTA FCHA
Sbjct: 79 KPEQKGKPEKRVNGIFWIILLNIAIFVADHFFRVNGIKALYLYHNWPSWYQFVTATFCHA 138
Query: 147 NWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAV 206
NW HLSSNLFFLYIFGKLVEEEEGNF LWLSYI TG AN VSWL+LP+N VSVGASGAV
Sbjct: 139 NWKHLSSNLFFLYIFGKLVEEEEGNFALWLSYILTGVGANLVSWLVLPRNTVSVGASGAV 198
Query: 207 FGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQSINHIA 266
FGLF+ISVLVKMSWDWRKILEVLILGQFV+EKVMEAAQAS +SG GGY++QS+NHIA
Sbjct: 199 FGLFSISVLVKMSWDWRKILEVLILGQFVIEKVMEAAQASTSLSGR--GGYALQSVNHIA 256
Query: 267 HLSGA 271
HLSGA
Sbjct: 257 HLSGA 261
>gi|388504724|gb|AFK40428.1| unknown [Lotus japonicus]
Length = 284
Score = 330 bits (845), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 160/225 (71%), Positives = 181/225 (80%), Gaps = 6/225 (2%)
Query: 53 PIKLRPLRHPS-----LTLRSRLVCN-MSGSDMISQLELDKPEERRKPKKSVNGVFWIIL 106
P LRH L RS C+ + SD++ QLEL KPE +RKP+K +G+FW+IL
Sbjct: 40 PFTRTALRHSHHSLSLLRFRSPTHCSKIKNSDLVPQLELGKPENKRKPEKRASGIFWVIL 99
Query: 107 LNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVE 166
LN+G++VAD FQV IK++YLYHN P+WYQFVTA FCHANW HLSSNLFFLYI GKLVE
Sbjct: 100 LNIGIFVADKFFQVNGIKAMYLYHNRPSWYQFVTATFCHANWKHLSSNLFFLYISGKLVE 159
Query: 167 EEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKIL 226
EEEGNF LWL YI TG AN VSWLILP++ VSVGASGAVFGLF ISVLVKMSWDWRKIL
Sbjct: 160 EEEGNFALWLCYILTGVGANLVSWLILPRDIVSVGASGAVFGLFTISVLVKMSWDWRKIL 219
Query: 227 EVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQSINHIAHLSGA 271
EVLILGQFVVEKVMEAAQAS ++GTF GGYS+QS+NHIAHLSGA
Sbjct: 220 EVLILGQFVVEKVMEAAQASTSLTGTFRGGYSLQSVNHIAHLSGA 264
>gi|449437036|ref|XP_004136298.1| PREDICTED: putative rhomboid protease YdcA-like [Cucumis sativus]
Length = 220
Score = 324 bits (831), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 155/190 (81%), Positives = 171/190 (90%), Gaps = 1/190 (0%)
Query: 82 QLELDKPEERRKPKKSVNGVFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTA 141
QLEL KP + RK +K VNG+FWIILLN+G+YVADHVFQVR+I +LYLYH+ PAWYQF TA
Sbjct: 2 QLELGKPLQNRKTEKRVNGIFWIILLNIGIYVADHVFQVRNIGALYLYHSRPAWYQFFTA 61
Query: 142 AFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVG 201
FCHANWNHLSSNLFFLYIFGKLVEEEEGNF LWLSYI TG AN VSWLILP+NAVSVG
Sbjct: 62 TFCHANWNHLSSNLFFLYIFGKLVEEEEGNFALWLSYILTGVGANIVSWLILPRNAVSVG 121
Query: 202 ASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQS 261
ASGAVFGLF ISVLVKMSWDWRKILEVLILGQFV+EKVMEAAQAS +SG+F GYS+Q+
Sbjct: 122 ASGAVFGLFTISVLVKMSWDWRKILEVLILGQFVIEKVMEAAQASTALSGSF-RGYSLQN 180
Query: 262 INHIAHLSGA 271
+NH+AHLSGA
Sbjct: 181 VNHVAHLSGA 190
>gi|357436521|ref|XP_003588536.1| Rhomboid family protein (ISS) [Medicago truncatula]
gi|355477584|gb|AES58787.1| Rhomboid family protein (ISS) [Medicago truncatula]
Length = 302
Score = 323 bits (829), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 179/293 (61%), Positives = 207/293 (70%), Gaps = 38/293 (12%)
Query: 1 MAQFQFQLATVKPHHSF---SFMPIAP-LSISHKPFNFLPKSSTIKCLSNSPKLNLPIKL 56
+A F+F + KP H F SF + P SI + P + T CLS+ NLP
Sbjct: 6 VATFKFNNSFYKPIHHFRTPSFSSVPPTFSIKNFP------NITYPCLSHHSLFNLP--- 56
Query: 57 RPLRHPSLTLRSRLVCNMSGSDMISQLELDKPE-ERRKPKKSVNGVFWIILLNLGLYVAD 115
PSLTL + N + SDMISQLE+ KPE +R+P K VNG+FWIILLN+G++VAD
Sbjct: 57 ----SPSLTLCNN---NNNKSDMISQLEVAKPELNKREPVKRVNGIFWIILLNIGIFVAD 109
Query: 116 HVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGK------------ 163
H FQV IK+LYL+H+ P W+QF+TA FCHANW HLSSNLFFLYIFGK
Sbjct: 110 HFFQVGGIKALYLFHSRPDWFQFLTATFCHANWKHLSSNLFFLYIFGKAVIRMNVCYFVA 169
Query: 164 -----LVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFAISVLVKM 218
LVEEE G+F LWLSYI TG AN VSWLILP+N VSVGASGAVFGLF ISVLVKM
Sbjct: 170 FATGKLVEEEGGSFALWLSYILTGVGANLVSWLILPRNTVSVGASGAVFGLFTISVLVKM 229
Query: 219 SWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQSINHIAHLSGA 271
SWDWRKILEVLILGQFVVEKVMEAAQAS + GTF GGY++Q++NHIAHLSGA
Sbjct: 230 SWDWRKILEVLILGQFVVEKVMEAAQASTSLPGTFRGGYALQNVNHIAHLSGA 282
>gi|449517251|ref|XP_004165659.1| PREDICTED: LOW QUALITY PROTEIN: putative rhomboid protease
YdcA-like [Cucumis sativus]
Length = 220
Score = 322 bits (826), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 154/190 (81%), Positives = 170/190 (89%), Gaps = 1/190 (0%)
Query: 82 QLELDKPEERRKPKKSVNGVFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTA 141
QLEL KP + RK +K VNG+FWIILLN+G+YVADHVFQVR+I +LYLYH+ PAWYQF TA
Sbjct: 2 QLELGKPLQNRKTEKRVNGIFWIILLNIGIYVADHVFQVRNIGALYLYHSRPAWYQFFTA 61
Query: 142 AFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVG 201
FCHANWNHLSSN FFLYIFGKLVEEEEGNF LWLSYI TG AN VSWLILP+NAVSVG
Sbjct: 62 TFCHANWNHLSSNXFFLYIFGKLVEEEEGNFALWLSYILTGVGANIVSWLILPRNAVSVG 121
Query: 202 ASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQS 261
ASGAVFGLF ISVLVKMSWDWRKILEVLILGQFV+EKVMEAAQAS +SG+F GYS+Q+
Sbjct: 122 ASGAVFGLFTISVLVKMSWDWRKILEVLILGQFVIEKVMEAAQASTALSGSF-RGYSLQN 180
Query: 262 INHIAHLSGA 271
+NH+AHLSGA
Sbjct: 181 VNHVAHLSGA 190
>gi|326521496|dbj|BAK00324.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 278
Score = 303 bits (776), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 150/231 (64%), Positives = 182/231 (78%), Gaps = 22/231 (9%)
Query: 60 RH-PSLTLRSRLV------------CNMSGSDMISQLELDKPEERRKPKKSVNGVFWIIL 106
RH PS+++ RLV C M SD++S+LEL K +++ + N +FWI+L
Sbjct: 30 RHAPSISITRRLVAVVAAARRDLLRCGMRHSDLVSELELAKDTKQQGGR--ANAIFWILL 87
Query: 107 LNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVE 166
LNLGLYVADH+ Q+R IK+LYLYH FP+WYQFVT+ FCHANWNHLSSNLFF+YIFGKLVE
Sbjct: 88 LNLGLYVADHLLQIRQIKALYLYHAFPSWYQFVTSTFCHANWNHLSSNLFFVYIFGKLVE 147
Query: 167 EEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKIL 226
EEEGNF LW+SYIFTGA AN +SWL+LP ++VS+GASGAVFGLF ISVLVKMSWDWRKIL
Sbjct: 148 EEEGNFALWMSYIFTGAGANLISWLVLPTSSVSLGASGAVFGLFTISVLVKMSWDWRKIL 207
Query: 227 EVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQSINHIAHLSGALFGVFL 277
EVLILGQFVV+KVMEAA+A T + G ++Q +N+IAH+SGAL G L
Sbjct: 208 EVLILGQFVVDKVMEAARA------TTVTGTALQ-VNNIAHVSGALIGAAL 251
>gi|357134247|ref|XP_003568729.1| PREDICTED: uncharacterized protein LOC100841940 [Brachypodium
distachyon]
Length = 279
Score = 298 bits (762), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 144/211 (68%), Positives = 171/211 (81%), Gaps = 9/211 (4%)
Query: 67 RSRLVCNMSGSDMISQLELDKPEERRKPKKSVNGVFWIILLNLGLYVADHVFQVRSIKSL 126
R L C M SD++S+LEL K +R+ + N +FWI+L+N GLYVADH Q+R IK+L
Sbjct: 49 RDLLRCGMRRSDLVSELELAKGRQRQGGR--ANAIFWILLINFGLYVADHFLQIRQIKAL 106
Query: 127 YLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAAN 186
YLYH +P+WYQFVT+ FCHANWNHLSSNLFF+YIFGKLVEEEEGNF LW+SYI TGA AN
Sbjct: 107 YLYHAYPSWYQFVTSTFCHANWNHLSSNLFFVYIFGKLVEEEEGNFALWMSYILTGAGAN 166
Query: 187 FVSWLILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQAS 246
+SWL+LP ++VS+GASGAVFGLF ISVLVKMSWDWRKILEVLILGQFVV+KVMEAA+A
Sbjct: 167 LISWLVLPTSSVSLGASGAVFGLFTISVLVKMSWDWRKILEVLILGQFVVDKVMEAARA- 225
Query: 247 AGMSGTFIGGYSVQSINHIAHLSGALFGVFL 277
T + G +VQ +N+IAHLSGAL G L
Sbjct: 226 -----TTVTGAAVQ-VNNIAHLSGALIGAAL 250
>gi|116792140|gb|ABK26248.1| unknown [Picea sitchensis]
Length = 305
Score = 295 bits (754), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 146/217 (67%), Positives = 169/217 (77%), Gaps = 2/217 (0%)
Query: 63 SLTLRSRLVCN--MSGSDMISQLELDKPEERRKPKKSVNGVFWIILLNLGLYVADHVFQV 120
+L LR+R + SDMISQLELDK E ++ V+ +FW++LLN+G+YVADH+ Q
Sbjct: 65 TLQLRTRAGSDPQRRTSDMISQLELDKSESLSTRRRPVSAIFWLLLLNIGIYVADHLLQF 124
Query: 121 RSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIF 180
IK LYLYH+ P WYQF TA FCH NW+HLSSNLFFLYIFGKLVEEE G F LWLSY+
Sbjct: 125 VPIKWLYLYHDLPQWYQFFTATFCHVNWSHLSSNLFFLYIFGKLVEEEGGGFALWLSYLV 184
Query: 181 TGAAANFVSWLILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVM 240
TGA AN VSWLILP+ VS+GASGAVFGLFA+SVLVK+SWDWRKILEVLILGQFV+EKVM
Sbjct: 185 TGAGANLVSWLILPRTVVSIGASGAVFGLFAVSVLVKISWDWRKILEVLILGQFVIEKVM 244
Query: 241 EAAQASAGMSGTFIGGYSVQSINHIAHLSGALFGVFL 277
+AAQAS G V++INHIAHLSGAL GV L
Sbjct: 245 DAAQASTQFVGNNSRILGVENINHIAHLSGALVGVAL 281
>gi|115462695|ref|NP_001054947.1| Os05g0220600 [Oryza sativa Japonica Group]
gi|46981237|gb|AAT07555.1| unknown protein [Oryza sativa Japonica Group]
gi|46981306|gb|AAT07624.1| unknown protein [Oryza sativa Japonica Group]
gi|113578498|dbj|BAF16861.1| Os05g0220600 [Oryza sativa Japonica Group]
gi|125551299|gb|EAY97008.1| hypothetical protein OsI_18930 [Oryza sativa Indica Group]
gi|215707124|dbj|BAG93584.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222630649|gb|EEE62781.1| hypothetical protein OsJ_17584 [Oryza sativa Japonica Group]
Length = 276
Score = 292 bits (748), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 141/208 (67%), Positives = 173/208 (83%), Gaps = 13/208 (6%)
Query: 72 CNMSGSDMISQLEL--DKPEERRKPKKSVNGVFWIILLNLGLYVADHVFQVRSIKSLYLY 129
C M SD+++ LEL DK + R+P NG+FWI+LLN+G+YVADH+FQ+ IK++YLY
Sbjct: 53 CGMRRSDLVADLELAKDKQWQGRRP----NGIFWILLLNVGIYVADHLFQIEHIKAMYLY 108
Query: 130 HNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVS 189
H FP+W+QFVT+ FCHANWNHLSSNLFF+YIFGKLVEEEEG+F LW+SYI TGA +N +S
Sbjct: 109 HAFPSWFQFVTSTFCHANWNHLSSNLFFVYIFGKLVEEEEGSFALWMSYILTGAGSNLIS 168
Query: 190 WLILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGM 249
WL+LP ++VS+GASGAVFGLF ISVLVKMSWDWRKILEVLILGQFVV+KVMEAA+A
Sbjct: 169 WLVLPTSSVSLGASGAVFGLFTISVLVKMSWDWRKILEVLILGQFVVDKVMEAARA---- 224
Query: 250 SGTFIGGYSVQSINHIAHLSGALFGVFL 277
T + G+S+Q +N+IAHLSGAL G L
Sbjct: 225 --TTVTGHSLQ-VNNIAHLSGALIGAAL 249
>gi|242089963|ref|XP_002440814.1| hypothetical protein SORBIDRAFT_09g007300 [Sorghum bicolor]
gi|241946099|gb|EES19244.1| hypothetical protein SORBIDRAFT_09g007300 [Sorghum bicolor]
Length = 270
Score = 288 bits (738), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 151/248 (60%), Positives = 184/248 (74%), Gaps = 13/248 (5%)
Query: 31 PFNFL-PKSSTIKCLSNSPKLNLPIKLRPLRHPSLTLRSRLVCNMSGSDMISQLELDKPE 89
P FL P SS LS+ P+ +L + + +R R L S ++ +LE+ + +
Sbjct: 13 PRTFLKPLSSPF--LSSLPRRHL-VPVSAVRVAPAVRRGLLQYATKRSGLVEELEIARDK 69
Query: 90 ERRKPKKSVNGVFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWN 149
+ R + NG+FWI+LLN G+YVADH+ Q+R IKSLYLYH FP W+QFVT+ FCHANWN
Sbjct: 70 QPRS--RRANGIFWILLLNFGIYVADHLLQIRQIKSLYLYHAFPTWFQFVTSTFCHANWN 127
Query: 150 HLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGL 209
HLSSNLFF+YIFGKLVEEEEGNF LW+SYI TGA AN +SWL+LP ++VS+GASGAVFGL
Sbjct: 128 HLSSNLFFVYIFGKLVEEEEGNFALWMSYILTGAGANLISWLVLPTSSVSLGASGAVFGL 187
Query: 210 FAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQSINHIAHLS 269
F ISVLVKMSWDWRKILEVLILGQFVV+KVMEAA+A T I G S Q +N+IAH+S
Sbjct: 188 FTISVLVKMSWDWRKILEVLILGQFVVDKVMEAARA------TTITGQSFQ-VNNIAHVS 240
Query: 270 GALFGVFL 277
GAL G L
Sbjct: 241 GALIGAAL 248
>gi|226493649|ref|NP_001149969.1| LOC100283596 [Zea mays]
gi|195635797|gb|ACG37367.1| rhomboid family protein [Zea mays]
gi|413949430|gb|AFW82079.1| rhomboid family protein [Zea mays]
Length = 273
Score = 285 bits (728), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 137/201 (68%), Positives = 166/201 (82%), Gaps = 9/201 (4%)
Query: 77 SDMISQLELDKPEERRKPKKSVNGVFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPAWY 136
S ++ +LE+ K E++ + NG+FWI+LLN G+Y+ADH+FQ+R IKSLYLYH FP+W+
Sbjct: 57 SSLVEELEIAK--EKQPHSRRANGIFWILLLNFGIYMADHLFQIRQIKSLYLYHAFPSWF 114
Query: 137 QFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKN 196
QFVT+ FCHANWNHLSSNLFF+YIFGKLVEEEEGNF LW+SYI TGA AN +SWL LP +
Sbjct: 115 QFVTSTFCHANWNHLSSNLFFVYIFGKLVEEEEGNFALWMSYILTGAGANLISWLALPTS 174
Query: 197 AVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGG 256
+VS+GASGAVFGLF ISVLVKMSWDWRKILEVLILGQFVV+KV+EAA+A T I G
Sbjct: 175 SVSLGASGAVFGLFTISVLVKMSWDWRKILEVLILGQFVVDKVLEAARA------TTITG 228
Query: 257 YSVQSINHIAHLSGALFGVFL 277
S Q +N++AH+SGAL G L
Sbjct: 229 QSFQ-VNNVAHVSGALIGAAL 248
>gi|168035774|ref|XP_001770384.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678415|gb|EDQ64874.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 224
Score = 265 bits (678), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 137/199 (68%), Positives = 161/199 (80%), Gaps = 5/199 (2%)
Query: 80 ISQLELDKPEERRKPKKSVNGVFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFV 139
ISQLEL+ +K K S NG+F ++L+N + ADH ++ ++SLYLYH+FP WYQF
Sbjct: 13 ISQLELESSGNPKK-KASFNGIFTLLLINFVAFAADHWLKLPFVRSLYLYHDFPRWYQFF 71
Query: 140 TAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVS 199
T+ F HA+W HLSSNLFFLYIFGKLVEEEEG+F +WLSYIFTG AN VSWLILP+ VS
Sbjct: 72 TSTFIHASWAHLSSNLFFLYIFGKLVEEEEGSFAVWLSYIFTGVGANLVSWLILPRTVVS 131
Query: 200 VGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSG-TFIGGYS 258
VGASGAVFGLFAISVLVK+S+DWRKILEVLILGQFVV+KVMEAAQAS ++G TF+G
Sbjct: 132 VGASGAVFGLFAISVLVKLSFDWRKILEVLILGQFVVDKVMEAAQASTQLAGRTFMGA-- 189
Query: 259 VQSINHIAHLSGALFGVFL 277
+INHIAHLSGAL GV L
Sbjct: 190 -SNINHIAHLSGALVGVLL 207
>gi|223950233|gb|ACN29200.1| unknown [Zea mays]
Length = 183
Score = 251 bits (641), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 122/165 (73%), Positives = 141/165 (85%), Gaps = 7/165 (4%)
Query: 113 VADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNF 172
+ADH+FQ+R IKSLYLYH FP+W+QFVT+ FCHANWNHLSSNLFF+YIFGKLVEEEEGNF
Sbjct: 1 MADHLFQIRQIKSLYLYHAFPSWFQFVTSTFCHANWNHLSSNLFFVYIFGKLVEEEEGNF 60
Query: 173 GLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILG 232
LW+SYI TGA AN +SWL LP ++VS+GASGAVFGLF ISVLVKMSWDWRKILEVLILG
Sbjct: 61 ALWMSYILTGAGANLISWLALPTSSVSLGASGAVFGLFTISVLVKMSWDWRKILEVLILG 120
Query: 233 QFVVEKVMEAAQASAGMSGTFIGGYSVQSINHIAHLSGALFGVFL 277
QFVV+KV+EAA+A T I G S Q +N++AH+SGAL G L
Sbjct: 121 QFVVDKVLEAARA------TTITGQSFQ-VNNVAHVSGALIGAAL 158
>gi|302772887|ref|XP_002969861.1| hypothetical protein SELMODRAFT_146877 [Selaginella moellendorffii]
gi|300162372|gb|EFJ28985.1| hypothetical protein SELMODRAFT_146877 [Selaginella moellendorffii]
Length = 248
Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 135/259 (52%), Positives = 165/259 (63%), Gaps = 30/259 (11%)
Query: 20 MPIAPLSISHKPFNFLPKSSTIKCLSNSPKLNLPIKLRPLRHPSLTLRSRLVCNMSGSDM 79
M I L + + P+SS + L+ LR +LR+R +
Sbjct: 5 MTILALRAPAQALSIAPRSSRLLLLNRG---------MALRGDRSSLRAR-------ASK 48
Query: 80 ISQLELD-KPEERRKPKKSVNGVFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQF 138
S LEL+ K E+RRKP ++ + L NLG+Y DH +V +K LYLYHN P WYQF
Sbjct: 49 YSNLELEEKGEKRRKPGNALYLLL---LANLGVYALDHWLEVPGMKLLYLYHNSPRWYQF 105
Query: 139 VTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAV 198
+TA FCH NW H+SSNLFFLY+FGKLVEEEEG FGLW SYI TG AN +SWL+LP N V
Sbjct: 106 ITATFCHGNWGHISSNLFFLYMFGKLVEEEEGGFGLWASYIVTGVGANLLSWLLLPGNVV 165
Query: 199 SVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYS 258
S+GASGAVFGLFAISVLVK+SWDWRK+LEVL+LGQFVV KV+E Q S
Sbjct: 166 SIGASGAVFGLFAISVLVKLSWDWRKLLEVLVLGQFVVNKVVEETQMLQAAS-------- 217
Query: 259 VQSINHIAHLSGALFGVFL 277
S+NH+AH +GA+ GV L
Sbjct: 218 --SVNHVAHCAGAMVGVLL 234
>gi|145352382|ref|XP_001420528.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580762|gb|ABO98821.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 228
Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 103/196 (52%), Positives = 135/196 (68%), Gaps = 15/196 (7%)
Query: 93 KPKKSVNGVFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLS 152
+ + +GVF ++ +N L+ DH + +K+LYL H P W+QF T+ FCHANW HLS
Sbjct: 27 RRTAAYDGVFALLFINFALFACDHWAHMAFVKTLYLNHAKPTWWQFATSTFCHANWAHLS 86
Query: 153 SNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKN-----------AVSVG 201
SN+FFLYIFGKLVEEEEG FG+W+SY+ TG AN SWL+LPK+ VS+G
Sbjct: 87 SNIFFLYIFGKLVEEEEGAFGVWMSYLVTGIGANVASWLLLPKSVGGVLGIGGAATVSLG 146
Query: 202 ASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQS 261
ASGAVFGLFA+SVLVK+SW+WR++LEV+ILGQFVV++ + A+ M G +
Sbjct: 147 ASGAVFGLFAVSVLVKLSWNWRRLLEVVILGQFVVDRFLSEAK----MVAAAGSGVGAGN 202
Query: 262 INHIAHLSGALFGVFL 277
+NH+AHL GA GV L
Sbjct: 203 VNHVAHLGGAFAGVLL 218
>gi|386828855|ref|ZP_10115962.1| putative membrane protein [Beggiatoa alba B18LD]
gi|386429739|gb|EIJ43567.1| putative membrane protein [Beggiatoa alba B18LD]
Length = 195
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 97/185 (52%), Positives = 132/185 (71%), Gaps = 11/185 (5%)
Query: 93 KPKKSVNGVFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLS 152
+P++ NGVF +I++NLG Y+ DH+ Q+ ++ LYL H+ P WYQFVT+ FCHA+W HLS
Sbjct: 8 QPQQRYNGVFTLIIINLGFYILDHILQL-PLERLYLNHHHPEWYQFVTSLFCHASWQHLS 66
Query: 153 SNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFAI 212
NLFFLY+FGKL+EE+EG G+ +SY+ G AN +SWL+ S+GASGAVFGLF++
Sbjct: 67 GNLFFLYLFGKLIEEQEGASGVVISYLICGIGANIMSWLLQSGYFSSLGASGAVFGLFSV 126
Query: 213 SVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQSINHIAHLSGAL 272
SVL+++SWDWR++LEVLILGQFV+ +V++ Q G IN +AHL GA
Sbjct: 127 SVLIRLSWDWRRLLEVLILGQFVLIQVIQETQQLGQADG----------INRVAHLGGAF 176
Query: 273 FGVFL 277
GV L
Sbjct: 177 IGVLL 181
>gi|434393813|ref|YP_007128760.1| Rhomboid family protein [Gloeocapsa sp. PCC 7428]
gi|428265654|gb|AFZ31600.1| Rhomboid family protein [Gloeocapsa sp. PCC 7428]
Length = 200
Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 103/195 (52%), Positives = 134/195 (68%), Gaps = 11/195 (5%)
Query: 83 LELDKPEERRKPKKSVNGVFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAA 142
L+ D+P PK++ NGVF +I++NL ++VAD V + I++LYL H PAWYQF T+
Sbjct: 2 LKKDQPLTTY-PKQNYNGVFTLIIINLVVFVADRVLGIPFIQNLYLNHASPAWYQFFTSM 60
Query: 143 FCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGA 202
FCHANW H+S NLFFLYIFG++VEEEEG G+ SYI G + +S+ S+GA
Sbjct: 61 FCHANWAHISGNLFFLYIFGRIVEEEEGVIGVVSSYIICGLGGSLMSYFFHGGAVYSLGA 120
Query: 203 SGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQSI 262
SGAVFGLFA+SVL+K+SW WRKILEVLILGQFV+E+V+ + + G +
Sbjct: 121 SGAVFGLFAVSVLIKLSWHWRKILEVLILGQFVIERVVFELRQTGIQDG----------V 170
Query: 263 NHIAHLSGALFGVFL 277
+HIAHL GAL GV L
Sbjct: 171 DHIAHLGGALVGVAL 185
>gi|384253784|gb|EIE27258.1| rhomboid-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 199
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 96/186 (51%), Positives = 131/186 (70%), Gaps = 4/186 (2%)
Query: 92 RKPKKSVNGVFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHL 151
+ S GVFW++L+NL LY AD+VF+ + SLYL+H P W+QF+TAAFCHA+W+HL
Sbjct: 2 KPSSSSAVGVFWLLLVNLVLYAADYVFKAPWVSSLYLWHRAPHWWQFLTAAFCHASWDHL 61
Query: 152 SSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFA 211
SSNLF LY FGK+VEEEEG LW +YI A+ S+ P S+GASGAVFGLFA
Sbjct: 62 SSNLFMLYTFGKIVEEEEGPGALWFTYIVCSVGASAASFFADPAATYSLGASGAVFGLFA 121
Query: 212 ISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQSINHIAHLSGA 271
++VL+K+ ++++K++E L+LGQFVV++V++ SA G IG + HIAHL+GA
Sbjct: 122 VAVLLKLRFNFQKLVECLVLGQFVVKQVLQEV-VSAQNGGAMIGA---SKVGHIAHLAGA 177
Query: 272 LFGVFL 277
+ GV L
Sbjct: 178 VMGVAL 183
>gi|428777216|ref|YP_007169003.1| rhomboid family protein [Halothece sp. PCC 7418]
gi|428691495|gb|AFZ44789.1| Rhomboid family protein [Halothece sp. PCC 7418]
Length = 372
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 91/179 (50%), Positives = 121/179 (67%), Gaps = 10/179 (5%)
Query: 99 NGVFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFL 158
NG+F ++ +N +++ DH ++ + YL H+ AWYQ +T+ FCHANW HLSSNLFFL
Sbjct: 188 NGLFALLAINFIIFILDHTISLQFFDTFYLDHDDVAWYQLITSMFCHANWQHLSSNLFFL 247
Query: 159 YIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFAISVLVKM 218
Y+FGKLVEEEEG G+ SY+ G AN +S + P VS+GASGAVFGLF +SVL+K+
Sbjct: 248 YLFGKLVEEEEGVMGIVGSYLICGLGANLMSLMFQPSYVVSLGASGAVFGLFTVSVLLKL 307
Query: 219 SWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQSINHIAHLSGALFGVFL 277
W WR++LEV+ILGQFV+++V+ Q + G IN IAHL GAL GV L
Sbjct: 308 GWHWRRLLEVIILGQFVLQRVLFELQNLDRVDG----------INRIAHLGGALMGVIL 356
>gi|224029145|gb|ACN33648.1| unknown [Zea mays]
Length = 168
Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 95/129 (73%), Positives = 108/129 (83%), Gaps = 7/129 (5%)
Query: 149 NHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFG 208
NHLSSNLFF+YIFGKLVEEEEGNF LW+SYI TGA AN +SWL LP ++VS+GASGAVFG
Sbjct: 22 NHLSSNLFFVYIFGKLVEEEEGNFALWMSYILTGAGANLISWLALPTSSVSLGASGAVFG 81
Query: 209 LFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQSINHIAHL 268
LF ISVLVKMSWDWRKILEVLILGQFVV+KV+EAA+A T I G S Q +N++AH+
Sbjct: 82 LFTISVLVKMSWDWRKILEVLILGQFVVDKVLEAARA------TTITGQSFQ-VNNVAHV 134
Query: 269 SGALFGVFL 277
SGAL G L
Sbjct: 135 SGALIGAAL 143
>gi|443312945|ref|ZP_21042559.1| putative membrane protein [Synechocystis sp. PCC 7509]
gi|442777095|gb|ELR87374.1| putative membrane protein [Synechocystis sp. PCC 7509]
Length = 201
Score = 187 bits (474), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 96/193 (49%), Positives = 132/193 (68%), Gaps = 11/193 (5%)
Query: 86 DKPEERRKPKKSVNGVFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCH 145
D + K K + NGVF +I++NL +++AD + I++LYL + P+WYQF TA FCH
Sbjct: 5 DNQTGKNKLKNTYNGVFALIIINLVIFIADKGLNLGFIRNLYLNFSSPSWYQFFTAMFCH 64
Query: 146 ANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNA-VSVGASG 204
ANW H+S NLFFLYIFGKLVEEEEG G+ SY+ G A+ +S+L +A S+GASG
Sbjct: 65 ANWAHISGNLFFLYIFGKLVEEEEGVIGVVSSYLICGLGASVMSFLFHGSSAGYSLGASG 124
Query: 205 AVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQSINH 264
AVFGLF +SVL+K+SW WR++LEV+ILGQFVVE+++ + + G ++H
Sbjct: 125 AVFGLFVVSVLIKLSWHWRRVLEVIILGQFVVERILFEFRQTGITDG----------VDH 174
Query: 265 IAHLSGALFGVFL 277
+AH+ GAL GV L
Sbjct: 175 VAHIGGALVGVAL 187
>gi|412987965|emb|CCO19361.1| predicted protein [Bathycoccus prasinos]
Length = 328
Score = 183 bits (465), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 99/191 (51%), Positives = 129/191 (67%), Gaps = 18/191 (9%)
Query: 99 NGVFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFL 158
NGVF ++ N + DH Q+ +K YL H P W+QFVT FCHA+W+HLSSN+FFL
Sbjct: 134 NGVFALLFFNFLFFALDHWLQLPMMKMFYLNHVDPTWWQFVTCTFCHASWDHLSSNIFFL 193
Query: 159 YIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKN-----------AVSVGASGAVF 207
YIFGKL+EEEEG FG+W SY+ TG A+ SWL+LPK+ VS+GASGAVF
Sbjct: 194 YIFGKLIEEEEGAFGVWCSYVATGTGASLASWLMLPKSVGGVLGMGAAATVSLGASGAVF 253
Query: 208 GLFAISVLVKMSWDWRKILEVLILGQFVVEKVM-EAAQASAGMSGTFIGGYSVQSINHIA 266
GLFA+SVLVK+ ++W++ILEV++LGQFV+E+ + EAA +NH+A
Sbjct: 254 GLFAVSVLVKLKFEWKRILEVVVLGQFVMERFLNEAAMIGKVGG------VGAGGVNHVA 307
Query: 267 HLSGALFGVFL 277
HL+GAL GV L
Sbjct: 308 HLAGALAGVVL 318
>gi|303284387|ref|XP_003061484.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226456814|gb|EEH54114.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 369
Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 102/253 (40%), Positives = 139/253 (54%), Gaps = 68/253 (26%)
Query: 88 PEERRKPKKSVNG--VFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCH 145
P R + + NG VF ++L+N+ +VAD+ ++ +++LYL H P W+QFVT+ FCH
Sbjct: 111 PARRARSSRDGNGDGVFALLLVNVAAFVADNWLRLPVMRALYLNHMHPQWWQFVTSIFCH 170
Query: 146 ANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNA-------- 197
ANW HLS N+FFLY+FG++VEEEEG FG+W SY+FTG A S+L+LPK A
Sbjct: 171 ANWAHLSGNIFFLYVFGRIVEEEEGTFGVWFSYLFTGVGAGVASYLVLPKAAGGMLGLGA 230
Query: 198 ---VSVGASGAVF----------------------------------------------- 207
VS+GASGAVF
Sbjct: 231 AATVSLGASGAVFGASLGLSTRGARRRLVVFSLRWIRSAADAGATVPPSLSLSPPSVRPS 290
Query: 208 ---GLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQSINH 264
GLFAISVL KM ++RK+LE +ILGQFV+E+ + A+ + + GG +NH
Sbjct: 291 VPPGLFAISVLTKMKMNFRKLLEAVILGQFVIERFLSEARMA-----SAAGGVGAGGVNH 345
Query: 265 IAHLSGALFGVFL 277
+AHL+GAL GV L
Sbjct: 346 VAHLAGALVGVLL 358
>gi|452821942|gb|EME28966.1| hypothetical protein Gasu_35410 [Galdieria sulphuraria]
Length = 300
Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 86/176 (48%), Positives = 121/176 (68%), Gaps = 3/176 (1%)
Query: 100 GVFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLY 159
GVF +IL+NL L+VA + L L H+ P W+QFVT +FCH +W HLS+NLFFL
Sbjct: 106 GVFVLILVNLLLFVASRFIWPNLLALLVLTHSGPRWWQFVTYSFCHESWAHLSNNLFFLL 165
Query: 160 IFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFAISVLVKMS 219
IFGKLVEEEEG FG+ +SY + +SW++LPK++VSVGASGAVFGLF I VL + S
Sbjct: 166 IFGKLVEEEEGAFGIIMSYCICAFGSALLSWMVLPKHSVSVGASGAVFGLFTICVLTRFS 225
Query: 220 WDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQSINHIAHLSGALFGV 275
W+W+++LE LILGQ+V + + + +A S ++ ++NHI H++G+ G+
Sbjct: 226 WNWKRLLEFLILGQYVYQILGREVRLAASSSSH---KWTAVAVNHIGHIAGSATGI 278
>gi|307110898|gb|EFN59133.1| hypothetical protein CHLNCDRAFT_49978 [Chlorella variabilis]
Length = 259
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 81/170 (47%), Positives = 111/170 (65%), Gaps = 5/170 (2%)
Query: 99 NGVFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFL 158
NGVF ++L+N GLY ++ + ++ +L L H P W+QFVT+ F HANW HLSSN F L
Sbjct: 72 NGVFLVLLINFGLYAGANLLHLPALSNLALSHWKPQWWQFVTSTFMHANWQHLSSNAFAL 131
Query: 159 YIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP-KNAVSVGASGAVFGLFAISVLVK 217
+FG+ VEEEEG GLWL+Y+ G S+L P +S+GASGAVFGLF ++V+ K
Sbjct: 132 LVFGRQVEEEEGALGLWLTYLVAGVGGAVASYLSSPHTRTISLGASGAVFGLFMVAVITK 191
Query: 218 MSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQSINHIAH 267
RK+LE++ILG FVV++V+ Q +AG G +GG V H+AH
Sbjct: 192 FKPSLRKLLELVILGSFVVQQVLGELQMAAG-GGLTVGGMQV---GHVAH 237
>gi|147812175|emb|CAN61519.1| hypothetical protein VITISV_033968 [Vitis vinifera]
Length = 292
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 108/277 (38%), Positives = 130/277 (46%), Gaps = 92/277 (33%)
Query: 1 MAQFQFQLATVKPHHSFSFMPIAPLSISHKPFNFLPKSSTIKCLSNSPKLNLPIKLRPLR 60
M QFQ LA MP A L + F+ LP SS+++ P LP P
Sbjct: 1 MGQFQQLLAHRPCTIKLMPMPSASLLPINAAFSKLPTSSSLR--XTPPTRLLPXSAAP-- 56
Query: 61 HPSLTLRSRLVCNMSGS---------------------------------------DMIS 81
SR VC M+GS D+ S
Sbjct: 57 -------SRFVCKMNGSVSSVLISNFVSLENHIDXCFMLSPVYFTVYLTXSMFXMYDLTS 109
Query: 82 QLELDKPEERRKPKKSVNGVFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTA 141
Q+EL K + KP++ VNG+FWIILLNLG++VADH+FQ
Sbjct: 110 QMELGKSGGKWKPQRQVNGIFWIILLNLGIFVADHLFQ---------------------- 147
Query: 142 AFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVG 201
NW ++ + G FTGA AN VSWL+LP+NAVSVG
Sbjct: 148 ----ENW----------------LKRRKETLGCGFLIFFTGAGANLVSWLVLPRNAVSVG 187
Query: 202 ASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEK 238
ASGAVFGLFAISVLVK+SWDWRKILEVLILGQFV+EK
Sbjct: 188 ASGAVFGLFAISVLVKISWDWRKILEVLILGQFVIEK 224
>gi|159486905|ref|XP_001701477.1| rhomboid-like protease [Chlamydomonas reinhardtii]
gi|158271659|gb|EDO97474.1| rhomboid-like protease [Chlamydomonas reinhardtii]
Length = 283
Score = 154 bits (388), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 86/214 (40%), Positives = 132/214 (61%), Gaps = 11/214 (5%)
Query: 69 RLVCNMSGSDMISQLELDKPEERRKPKKSVNGVFWIILLNLGLYVADHVFQVRSIKSLYL 128
++VC S + + + P + NGVF ++LL + +++AD++ + + L+L
Sbjct: 66 KIVCQASSTPV--PYNNNSPRSPEVFSAAGNGVFVLMLLCVLVFIADNLLHLPGMSLLHL 123
Query: 129 YHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFV 188
H P W+Q+ T FCHAN+ HLS NLF L +FGK+VEE EG G+ L+++ G A
Sbjct: 124 NHYKPQWWQWGTHLFCHANFAHLSGNLFNLCVFGKMVEETEGAVGVSLAFLVCGIGAAIA 183
Query: 189 SWLILPKNA-----VSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAA 243
++ + P A VSVGASGA+FGLFA+SV ++ W+ +++LE +LGQFVV +V+E A
Sbjct: 184 AFFLTPALAHGRITVSVGASGAIFGLFAVSVATRLRWNLKQLLEAAVLGQFVVRQVLEEA 243
Query: 244 QASAGMSGTFIGGYSVQSINHIAHLSGALFGVFL 277
+ A G +GG +V +H+AHL+GA GV L
Sbjct: 244 KNQA-TGGLVLGGLAV---SHVAHLAGAAVGVAL 273
>gi|440797340|gb|ELR18431.1| peptidase, S54 (rhomboid) subfamily protein, partial [Acanthamoeba
castellanii str. Neff]
Length = 244
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 78/185 (42%), Positives = 120/185 (64%), Gaps = 14/185 (7%)
Query: 99 NGVFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFL 158
NGVF ++ +NL ++ DH+ ++ ++ YLY + P +Q VT+ FCHA++ HLSSNLFF+
Sbjct: 43 NGVFGLLCVNLAVFCLDHLVELEGMRGFYLYQHNPWVHQLVTSLFCHASYAHLSSNLFFI 102
Query: 159 YIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWL----ILPKNAV-SVGASGAVFGLFAIS 213
+IFG++VEE G++G+ ++ G AN ++ L + P V ++GASG VFGLF +S
Sbjct: 103 FIFGRIVEERRGSWGIVAVFLTCGICANLLTLLTPYDVKPGVVVYNLGASGGVFGLFVVS 162
Query: 214 VLVKMSWDWRKILEVLILGQFVVEKVMEAAQA---SAGMSGTFIGGYSVQSINHIAHLSG 270
VL ++ R ++EVL+LGQFV+ +++E Q+ SA SG + +IN AHL G
Sbjct: 163 VLDRLELRPRSLVEVLVLGQFVLNRIVEELQSLSRSAATSGDRV------NINRTAHLGG 216
Query: 271 ALFGV 275
AL GV
Sbjct: 217 ALTGV 221
>gi|302806924|ref|XP_002985193.1| hypothetical protein SELMODRAFT_49801 [Selaginella moellendorffii]
gi|300147021|gb|EFJ13687.1| hypothetical protein SELMODRAFT_49801 [Selaginella moellendorffii]
Length = 81
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 65/81 (80%), Positives = 72/81 (88%)
Query: 158 LYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFAISVLVK 217
LY+FGKLVEEEEG FGLW SYI TG AN +SWL+LP N VS+GASGAVFGLFAISVLVK
Sbjct: 1 LYMFGKLVEEEEGGFGLWASYIVTGVGANLLSWLLLPGNVVSIGASGAVFGLFAISVLVK 60
Query: 218 MSWDWRKILEVLILGQFVVEK 238
+SWDWRK+LEVL+LGQFVV K
Sbjct: 61 LSWDWRKLLEVLVLGQFVVNK 81
>gi|302845889|ref|XP_002954482.1| hypothetical protein VOLCADRAFT_106417 [Volvox carteri f.
nagariensis]
gi|300260154|gb|EFJ44375.1| hypothetical protein VOLCADRAFT_106417 [Volvox carteri f.
nagariensis]
Length = 275
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 64/139 (46%), Positives = 91/139 (65%), Gaps = 8/139 (5%)
Query: 133 PAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLI 192
P W+QF+T FCH NW HLS NLF L +FGK+VEE EG G+ L+++ G A ++L
Sbjct: 113 PQWWQFLTHMFCHGNWAHLSGNLFNLCVFGKMVEETEGALGVVLTFLLCGVGAALATFLA 172
Query: 193 LPKN----AVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAG 248
P + VSVGASGA+FGLFA+SV ++ W+ +++LE +LGQFVV +V++ A+
Sbjct: 173 TPASNGHVTVSVGASGAIFGLFAVSVATRLRWNLKQLLEAAVLGQFVVRQVLDEARHQVA 232
Query: 249 MSGTFIGGYSVQSINHIAH 267
G +GG +V +H AH
Sbjct: 233 -GGLMMGGMAV---SHAAH 247
>gi|406876561|gb|EKD26088.1| hypothetical protein ACD_79C01375G0003 [uncultured bacterium]
Length = 189
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 109/187 (58%), Gaps = 11/187 (5%)
Query: 91 RRKPKKSVNGVFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNH 150
+ P GVF ++ +N+ +++ +F + L+L + WYQ +T+ FCH ++H
Sbjct: 2 QNTPNNKYTGVFTLVTINIVIFILMKLFS-NELSFLFLNTSDVRWYQLLTSIFCHLEYSH 60
Query: 151 LSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLF 210
LS NLFFLYIFG+L+EE+EG G+ +SY+ G AN + ++ + +GASGA+FGLF
Sbjct: 61 LSGNLFFLYIFGRLIEEQEGTMGVVVSYLICGIGANLFTLVLNFHSGYYIGASGAIFGLF 120
Query: 211 AISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQSINHIAHLSG 270
IS+L+K + I+E+ IL FV+ ++ ++ + +I+H +H+ G
Sbjct: 121 TISMLIKFKPRFTNIIEIFILTPFVLGYIITELKSLN----------NSDNISHESHIYG 170
Query: 271 ALFGVFL 277
++ GV L
Sbjct: 171 SIVGVLL 177
>gi|298715786|emb|CBJ28264.1| rhomboid-like protease [Ectocarpus siliculosus]
Length = 473
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/192 (36%), Positives = 109/192 (56%), Gaps = 17/192 (8%)
Query: 95 KKSVNGVFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSN 154
K+ + V +++L GL+ + +F V + L L H P W+Q +T+ H + +HL N
Sbjct: 267 KRGLMAVHFLVLSCFGLFSLNTLFGVDRLFGLSLNHQRPRWWQSITSLLLHGDQHHLMGN 326
Query: 155 LFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFAISV 214
+F L IFGK+ EE+ G+ G+ +S++ G A++FVS +I+P+ A S GASGA+FGL+++ V
Sbjct: 327 MFNLIIFGKMAEEDMGSVGMLMSFVACGVASSFVSLMIMPQTARSCGASGAIFGLYSVCV 386
Query: 215 LVKM-------SWDW--RKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQSINHI 265
L KM S D RK++E + G FVV+ V+ M GG V+ I+H
Sbjct: 387 LGKMFNLGRRSSSDGRLRKLIEAAVFGWFVVDSVISE------MRMVVAGG--VKGIDHA 438
Query: 266 AHLSGALFGVFL 277
AH G G L
Sbjct: 439 AHFGGVFAGAVL 450
>gi|297812783|ref|XP_002874275.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297320112|gb|EFH50534.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 103
Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 58/81 (71%), Positives = 67/81 (82%)
Query: 158 LYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFAISVLVK 217
L++ GK+VEEE+GNFGLWLSY+FTG AN VSW LP N+VS GASGAVFGLF ISV VK
Sbjct: 5 LWLTGKIVEEEKGNFGLWLSYLFTGVGANLVSWFTLPPNSVSAGASGAVFGLFVISVRVK 64
Query: 218 MSWDWRKILEVLILGQFVVEK 238
MS WRK LE LILGQFV+++
Sbjct: 65 MSPGWRKFLEFLILGQFVMKR 85
>gi|15239484|ref|NP_197946.1| Rhomboid-related intramembrane serine protease family protein
[Arabidopsis thaliana]
gi|332006094|gb|AED93477.1| Rhomboid-related intramembrane serine protease family protein
[Arabidopsis thaliana]
Length = 102
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/85 (67%), Positives = 69/85 (81%)
Query: 158 LYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFAISVLVK 217
L++ GK+VEEE+GNFGLWLSY+FTG AN VSW LP N+ GASGAVFGLF ISVLVK
Sbjct: 5 LWLTGKIVEEEKGNFGLWLSYLFTGVGANMVSWFTLPPNSFFSGASGAVFGLFVISVLVK 64
Query: 218 MSWDWRKILEVLILGQFVVEKVMEA 242
MS W K LEVLILGQFV+++ +++
Sbjct: 65 MSRGWSKFLEVLILGQFVMKRFIDS 89
>gi|428168079|gb|EKX37028.1| hypothetical protein GUITHDRAFT_116754 [Guillardia theta CCMP2712]
Length = 148
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 81/152 (53%), Gaps = 29/152 (19%)
Query: 123 IKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTG 182
+ LY H P +Q+ T+ CHAN HLSSNLF L +FGKLVEEE G +GL L Y G
Sbjct: 3 MSGLYFNHMHPQLHQYFTSTLCHANAQHLSSNLFPLLVFGKLVEEEMGGWGLLLCYALCG 62
Query: 183 AAANFVSWLILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEA 242
AN S + LP + + +GASGAVFGLF I+V W K+ K+ A
Sbjct: 63 ILANVASIIFLPSSTLGLGASGAVFGLFTIAV-------WEKL------------KMEVA 103
Query: 243 AQASAGMSGTFIGGYSVQSINHIAHLSGALFG 274
A G++G +NH+AHL GA G
Sbjct: 104 ITAKGGIAG----------VNHVAHLGGAFAG 125
>gi|297812785|ref|XP_002874276.1| hypothetical protein ARALYDRAFT_910630 [Arabidopsis lyrata subsp.
lyrata]
gi|297320113|gb|EFH50535.1| hypothetical protein ARALYDRAFT_910630 [Arabidopsis lyrata subsp.
lyrata]
Length = 132
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/95 (54%), Positives = 64/95 (67%), Gaps = 14/95 (14%)
Query: 54 IKLRPLRHPSLTLRSRLVCNMSGSDMISQLELDKPEERRKPKKSVNGVFWIILLNLGLYV 113
I LRPL +RSR S +D+ Q EL+KP+ K NG+F IIL+NL +++
Sbjct: 52 IVLRPL----TVVRSR----SSETDITPQFELEKPQ------KQANGIFLIILINLAIFM 97
Query: 114 ADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANW 148
A H FQVR IKS+YLY +FPAWYQFVTA FCHANW
Sbjct: 98 AQHFFQVRGIKSMYLYSDFPAWYQFVTATFCHANW 132
>gi|308809555|ref|XP_003082087.1| rhomboid family protein (ISS) [Ostreococcus tauri]
gi|116060554|emb|CAL55890.1| rhomboid family protein (ISS), partial [Ostreococcus tauri]
Length = 150
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 48/109 (44%), Positives = 65/109 (59%), Gaps = 5/109 (4%)
Query: 62 PSLTLRSRLVCNMSGSDMISQLELDKPEERRKP----KKSVNGVFWIILLNLGLYVADHV 117
P L RL+ +G D +L R+ + +GVF ++ +N L+ DH
Sbjct: 41 PGLPDAERLMAKYAG-DAARELGRGVARATRRTSGTSRVGYDGVFALLFINFALFAMDHW 99
Query: 118 FQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVE 166
+ ++K+LYL H P W+QFVT+ FCHANW HLSSN+FFLYIFGKLVE
Sbjct: 100 LAIGAVKTLYLNHARPTWWQFVTSTFCHANWAHLSSNIFFLYIFGKLVE 148
>gi|417643203|ref|ZP_12293263.1| peptidase, S54 family [Staphylococcus warneri VCU121]
gi|330685982|gb|EGG97605.1| peptidase, S54 family [Staphylococcus epidermidis VCU121]
Length = 405
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 82/277 (29%), Positives = 126/277 (45%), Gaps = 34/277 (12%)
Query: 26 SISHKP-----FNFLPKSSTIKCLSNSPKLNLPIKL----RPLRH--PSLTLRSRLVCNM 74
++ +KP + F KS T L + L L K+ R L P++ L +
Sbjct: 72 NVGYKPSSIQFYYFTDKSITTDALDGTYPLKLKFKIINEDRDLERAMPNVFLTKLFKRDD 131
Query: 75 SGSDMISQLE-------LDKPEERRKPKKSV----NGVFWI-ILLNLGLYVADHVFQVRS 122
S IS LDK +R P + N + W+ ++L + + V
Sbjct: 132 SKKTAISYRNKVLSNNILDKHMQRFSPVTYILIISNVILWLCMILYFNRFSDIKLLDVGG 191
Query: 123 IKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTG 182
+ + H WY+ VT+ F H N+ H+ N+ LYIFGK+VE G++ + Y+F G
Sbjct: 192 LVHFNVVH--GEWYRLVTSMFLHFNFEHILMNMLSLYIFGKIVESVLGSWKMLAIYLFAG 249
Query: 183 AAANFVSWLILPKNAVSVGASGAVFGL----FAISVLVKMSWDWRKILEVLILGQFVV-- 236
NFVS L +SVGASGA+FGL FAI L K ++D R I ++LI ++
Sbjct: 250 IFGNFVS-LSFNTTTISVGASGAIFGLIGSIFAILYLSK-TFDKRVIGQLLIALVILIGL 307
Query: 237 EKVMEAAQASAGMSGTFIGGYSVQSINHIAHLSGALF 273
M A + G FIGG + I + +++ +F
Sbjct: 308 SLFMSNINVMAHLGG-FIGGLLITLIGYYFNVNRNIF 343
>gi|418621400|ref|ZP_13184176.1| peptidase, S54 family [Staphylococcus epidermidis VCU123]
gi|374829344|gb|EHR93148.1| peptidase, S54 family [Staphylococcus epidermidis VCU123]
Length = 394
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 74/249 (29%), Positives = 122/249 (48%), Gaps = 26/249 (10%)
Query: 36 PKSSTIKCLSNSPKLN-LPIKLRPLRHPSLTLRSRLVCNMSGSDMISQLELDKPEERRKP 94
P K +SN LN LPI L+ R + +++Q +DK +R P
Sbjct: 100 PIKLKFKIISNEQSLNSLPINFLLLKMLINNEDKRTYLHYK-RKVLTQNLVDKHMQRFTP 158
Query: 95 KKS----VNGVFWI-ILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWN 149
+N V W+ ++L L + + +V + + H WY+ +++ F H N+
Sbjct: 159 ITYTLILINIVIWLCMILYLNRFSDVKLLEVGGLVHFNVVHG--EWYRLISSMFLHFNFE 216
Query: 150 HLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGL 209
H+ N+ L+IFGK+VE G++ + + YI +G NFVS L +SVGASGA+FGL
Sbjct: 217 HILMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVS-LSFNTTTISVGASGAIFGL 275
Query: 210 F-AISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQSINHIAHL 268
+I V++ +S ++ K + +GQ ++ V+ S MS +IN +AHL
Sbjct: 276 IGSIFVIMYLSKNFNKKM----IGQLLIALVVLIV-FSLFMS----------NINIMAHL 320
Query: 269 SGALFGVFL 277
G + GV +
Sbjct: 321 GGFISGVLI 329
>gi|420172602|ref|ZP_14679101.1| rhomboid family protein [Staphylococcus epidermidis NIHLM067]
gi|394241763|gb|EJD87172.1| rhomboid family protein [Staphylococcus epidermidis NIHLM067]
Length = 486
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 121/249 (48%), Gaps = 26/249 (10%)
Query: 36 PKSSTIKCLSNSPKLN-LPIKLRPLRHPSLTLRSRLVCNMSGSDMISQLELDKPEERRKP 94
P K +SN LN LPI L+ R + +++Q +DK +R P
Sbjct: 100 PIKLKFKIISNEQSLNSLPINFLLLKMLINNEDKRTYLHYK-RKVLTQNLVDKHMQRFTP 158
Query: 95 KKS----VNGVFWI-ILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWN 149
+N V W+ ++L L + + +V + + H WY+ +++ F H N+
Sbjct: 159 ITYTLILINIVIWLCMILYLNRFSDVKLLEVGGLVHFNVVH--GEWYRLISSMFLHFNFE 216
Query: 150 HLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGL 209
H+ N+ L+IFGK+VE G++ + + YI +G NFVS L +SVGASGA+FGL
Sbjct: 217 HILMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVS-LSFNTTTISVGASGAIFGL 275
Query: 210 F-AISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQSINHIAHL 268
+I V++ +S ++ K + +GQ ++ V+ + + +IN +AHL
Sbjct: 276 IGSIFVIMYLSKNFNKKM----IGQLLIALVV-----------LIVFSLFMSNINIMAHL 320
Query: 269 SGALFGVFL 277
G + GV +
Sbjct: 321 GGFIIGVLI 329
>gi|418606637|ref|ZP_13169907.1| peptidase, S54 family [Staphylococcus epidermidis VCU057]
gi|374407413|gb|EHQ78275.1| peptidase, S54 family [Staphylococcus epidermidis VCU057]
Length = 477
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 121/249 (48%), Gaps = 26/249 (10%)
Query: 36 PKSSTIKCLSNSPKLN-LPIKLRPLRHPSLTLRSRLVCNMSGSDMISQLELDKPEERRKP 94
P K +SN LN LPI L+ R + +++Q +DK +R P
Sbjct: 100 PIKLKFKIISNEQSLNSLPINFLLLKMLINNEDKRTYLHYK-RKVLTQNLVDKHMQRFTP 158
Query: 95 KKS----VNGVFWI-ILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWN 149
+N V W+ ++L L + + +V + + H WY+ +++ F H N+
Sbjct: 159 ITYTLILINIVIWLCMILYLNRFSDVKLLEVGGLVHFNVVH--GEWYRLISSMFLHFNFE 216
Query: 150 HLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGL 209
H+ N+ L+IFGK+VE G++ + + YI +G NFVS L +SVGASGA+FGL
Sbjct: 217 HILMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVS-LSFNTTTISVGASGAIFGL 275
Query: 210 F-AISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQSINHIAHL 268
+I V++ +S ++ K + +GQ ++ V+ + + +IN +AHL
Sbjct: 276 IGSIFVIMYLSKNFNKKM----IGQLLIALVV-----------LIVFSLFMSNINIMAHL 320
Query: 269 SGALFGVFL 277
G + GV +
Sbjct: 321 GGFISGVLI 329
>gi|27468153|ref|NP_764790.1| hypothetical protein SE1235 [Staphylococcus epidermidis ATCC 12228]
gi|57867074|ref|YP_188690.1| rhomboid family protein [Staphylococcus epidermidis RP62A]
gi|251810965|ref|ZP_04825438.1| S54 family peptidase [Staphylococcus epidermidis BCM-HMP0060]
gi|282876025|ref|ZP_06284892.1| peptidase, S54 (rhomboid) family protein [Staphylococcus
epidermidis SK135]
gi|293366490|ref|ZP_06613167.1| rhomboid family protein [Staphylococcus epidermidis
M23864:W2(grey)]
gi|417646984|ref|ZP_12296833.1| peptidase, S54 family [Staphylococcus epidermidis VCU144]
gi|417656060|ref|ZP_12305751.1| peptidase, S54 family [Staphylococcus epidermidis VCU028]
gi|417659640|ref|ZP_12309240.1| peptidase, S54 family [Staphylococcus epidermidis VCU045]
gi|417908746|ref|ZP_12552503.1| peptidase, S54 family [Staphylococcus epidermidis VCU037]
gi|417912278|ref|ZP_12555973.1| peptidase, S54 family [Staphylococcus epidermidis VCU105]
gi|417913747|ref|ZP_12557410.1| peptidase, S54 family [Staphylococcus epidermidis VCU109]
gi|418609437|ref|ZP_13172589.1| peptidase, S54 family [Staphylococcus epidermidis VCU065]
gi|418612797|ref|ZP_13175821.1| peptidase, S54 family [Staphylococcus epidermidis VCU117]
gi|418616300|ref|ZP_13179225.1| peptidase, S54 family [Staphylococcus epidermidis VCU120]
gi|418625262|ref|ZP_13187915.1| peptidase, S54 family [Staphylococcus epidermidis VCU125]
gi|418626366|ref|ZP_13188978.1| peptidase, S54 family [Staphylococcus epidermidis VCU126]
gi|418629382|ref|ZP_13191890.1| peptidase, S54 family [Staphylococcus epidermidis VCU127]
gi|418665219|ref|ZP_13226669.1| peptidase, S54 family [Staphylococcus epidermidis VCU081]
gi|419771673|ref|ZP_14297719.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-K]
gi|420165544|ref|ZP_14672235.1| rhomboid family protein [Staphylococcus epidermidis NIHLM088]
gi|420170258|ref|ZP_14676819.1| rhomboid family protein [Staphylococcus epidermidis NIHLM070]
gi|420183211|ref|ZP_14689344.1| rhomboid family protein [Staphylococcus epidermidis NIHLM049]
gi|420194847|ref|ZP_14700644.1| rhomboid family protein [Staphylococcus epidermidis NIHLM021]
gi|420197429|ref|ZP_14703153.1| rhomboid family protein [Staphylococcus epidermidis NIHLM020]
gi|420201679|ref|ZP_14707289.1| rhomboid family protein [Staphylococcus epidermidis NIHLM018]
gi|420206132|ref|ZP_14711642.1| rhomboid family protein [Staphylococcus epidermidis NIHLM008]
gi|420209055|ref|ZP_14714493.1| rhomboid family protein [Staphylococcus epidermidis NIHLM003]
gi|420214009|ref|ZP_14719289.1| rhomboid family protein [Staphylococcus epidermidis NIH05005]
gi|420221664|ref|ZP_14726591.1| peptidase, S54 family [Staphylococcus epidermidis NIH08001]
gi|420225746|ref|ZP_14730573.1| peptidase, S54 family [Staphylococcus epidermidis NIH06004]
gi|420227336|ref|ZP_14732107.1| peptidase, S54 family [Staphylococcus epidermidis NIH05003]
gi|420229653|ref|ZP_14734358.1| peptidase, S54 family [Staphylococcus epidermidis NIH04003]
gi|420234711|ref|ZP_14739271.1| peptidase, S54 family [Staphylococcus epidermidis NIH051475]
gi|421606956|ref|ZP_16048207.1| rhomboid family protein [Staphylococcus epidermidis AU12-03]
gi|27315699|gb|AAO04834.1|AE016748_68 conserved hypothetical protein [Staphylococcus epidermidis ATCC
12228]
gi|57637732|gb|AAW54520.1| rhomboid family protein [Staphylococcus epidermidis RP62A]
gi|251805475|gb|EES58132.1| S54 family peptidase [Staphylococcus epidermidis BCM-HMP0060]
gi|281295050|gb|EFA87577.1| peptidase, S54 (rhomboid) family protein [Staphylococcus
epidermidis SK135]
gi|291319259|gb|EFE59628.1| rhomboid family protein [Staphylococcus epidermidis
M23864:W2(grey)]
gi|329725333|gb|EGG61816.1| peptidase, S54 family [Staphylococcus epidermidis VCU144]
gi|329735277|gb|EGG71569.1| peptidase, S54 family [Staphylococcus epidermidis VCU045]
gi|329737310|gb|EGG73564.1| peptidase, S54 family [Staphylococcus epidermidis VCU028]
gi|341651289|gb|EGS75094.1| peptidase, S54 family [Staphylococcus epidermidis VCU105]
gi|341654769|gb|EGS78507.1| peptidase, S54 family [Staphylococcus epidermidis VCU109]
gi|341656107|gb|EGS79830.1| peptidase, S54 family [Staphylococcus epidermidis VCU037]
gi|374407651|gb|EHQ78503.1| peptidase, S54 family [Staphylococcus epidermidis VCU065]
gi|374409194|gb|EHQ79994.1| peptidase, S54 family [Staphylococcus epidermidis VCU081]
gi|374817874|gb|EHR82049.1| peptidase, S54 family [Staphylococcus epidermidis VCU117]
gi|374821126|gb|EHR85193.1| peptidase, S54 family [Staphylococcus epidermidis VCU120]
gi|374825404|gb|EHR89340.1| peptidase, S54 family [Staphylococcus epidermidis VCU125]
gi|374832800|gb|EHR96505.1| peptidase, S54 family [Staphylococcus epidermidis VCU126]
gi|374834085|gb|EHR97745.1| peptidase, S54 family [Staphylococcus epidermidis VCU127]
gi|383360492|gb|EID37887.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-K]
gi|394235345|gb|EJD80917.1| rhomboid family protein [Staphylococcus epidermidis NIHLM088]
gi|394240596|gb|EJD86019.1| rhomboid family protein [Staphylococcus epidermidis NIHLM070]
gi|394249674|gb|EJD94887.1| rhomboid family protein [Staphylococcus epidermidis NIHLM049]
gi|394263907|gb|EJE08628.1| rhomboid family protein [Staphylococcus epidermidis NIHLM021]
gi|394266236|gb|EJE10882.1| rhomboid family protein [Staphylococcus epidermidis NIHLM020]
gi|394271947|gb|EJE16426.1| rhomboid family protein [Staphylococcus epidermidis NIHLM018]
gi|394277971|gb|EJE22288.1| rhomboid family protein [Staphylococcus epidermidis NIHLM008]
gi|394279283|gb|EJE23591.1| rhomboid family protein [Staphylococcus epidermidis NIHLM003]
gi|394283931|gb|EJE28092.1| rhomboid family protein [Staphylococcus epidermidis NIH05005]
gi|394290290|gb|EJE34154.1| peptidase, S54 family [Staphylococcus epidermidis NIH08001]
gi|394293180|gb|EJE36903.1| peptidase, S54 family [Staphylococcus epidermidis NIH06004]
gi|394297267|gb|EJE40870.1| peptidase, S54 family [Staphylococcus epidermidis NIH05003]
gi|394298947|gb|EJE42502.1| peptidase, S54 family [Staphylococcus epidermidis NIH04003]
gi|394303954|gb|EJE47364.1| peptidase, S54 family [Staphylococcus epidermidis NIH051475]
gi|406657425|gb|EKC83813.1| rhomboid family protein [Staphylococcus epidermidis AU12-03]
Length = 486
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 121/249 (48%), Gaps = 26/249 (10%)
Query: 36 PKSSTIKCLSNSPKLN-LPIKLRPLRHPSLTLRSRLVCNMSGSDMISQLELDKPEERRKP 94
P K +SN LN LPI L+ R + +++Q +DK +R P
Sbjct: 100 PIKLKFKIISNEQSLNSLPINFLLLKMLINNEDKRTYLHYK-RKVLTQNLVDKHMQRFTP 158
Query: 95 KKS----VNGVFWI-ILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWN 149
+N V W+ ++L L + + +V + + H WY+ +++ F H N+
Sbjct: 159 ITYTLILINIVIWLCMILYLNRFSDVKLLEVGGLVHFNVVH--GEWYRLISSMFLHFNFE 216
Query: 150 HLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGL 209
H+ N+ L+IFGK+VE G++ + + YI +G NFVS L +SVGASGA+FGL
Sbjct: 217 HILMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVS-LSFNTTTISVGASGAIFGL 275
Query: 210 F-AISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQSINHIAHL 268
+I V++ +S ++ K + +GQ ++ V+ + + +IN +AHL
Sbjct: 276 IGSIFVIMYLSKNFNKKM----IGQLLIALVV-----------LIVFSLFMSNINIMAHL 320
Query: 269 SGALFGVFL 277
G + GV +
Sbjct: 321 GGFISGVLI 329
>gi|420187246|ref|ZP_14693267.1| rhomboid family protein [Staphylococcus epidermidis NIHLM039]
gi|394256225|gb|EJE01158.1| rhomboid family protein [Staphylococcus epidermidis NIHLM039]
Length = 486
Score = 74.7 bits (182), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 121/249 (48%), Gaps = 26/249 (10%)
Query: 36 PKSSTIKCLSNSPKLN-LPIKLRPLRHPSLTLRSRLVCNMSGSDMISQLELDKPEERRKP 94
P K +SN LN LPI L+ R + +++Q +DK +R P
Sbjct: 100 PIKLKFKIISNEQSLNSLPINFLLLKMLINNEDKRTYLHYK-RKVLTQNLVDKHMQRFTP 158
Query: 95 KKS----VNGVFWI-ILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWN 149
+N V W+ ++L L + + +V + + H WY+ +++ F H N+
Sbjct: 159 ITYTLILINIVIWLCMILYLNRFSDVKLLEVGGLVHFNVVH--GEWYRLISSMFLHFNFE 216
Query: 150 HLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGL 209
H+ N+ L+IFGK+VE G++ + + YI +G NFVS L +SVGASGA+FGL
Sbjct: 217 HILMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVS-LSFNTTTISVGASGAIFGL 275
Query: 210 F-AISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQSINHIAHL 268
+I V++ +S ++ K + +GQ ++ V+ + + +IN +AHL
Sbjct: 276 IGSIFVIMYLSKNFNKKM----IGQLLIALVV-----------LIVFSLFMSNINIMAHL 320
Query: 269 SGALFGVFL 277
G + GV +
Sbjct: 321 GGFISGVLI 329
>gi|420211212|ref|ZP_14716586.1| rhomboid family protein [Staphylococcus epidermidis NIHLM001]
gi|394281665|gb|EJE25891.1| rhomboid family protein [Staphylococcus epidermidis NIHLM001]
Length = 486
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 121/249 (48%), Gaps = 26/249 (10%)
Query: 36 PKSSTIKCLSNSPKLN-LPIKLRPLRHPSLTLRSRLVCNMSGSDMISQLELDKPEERRKP 94
P K +SN LN LPI L+ R + +++Q +DK +R P
Sbjct: 100 PIKLKFKIISNEQSLNSLPINFLLLKMLINNEDKRTYLHYK-RKVLTQNLVDKHMQRFTP 158
Query: 95 KKS----VNGVFWI-ILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWN 149
+N V W+ ++L L + + +V + + H WY+ +++ F H N+
Sbjct: 159 ITYTLILINIVIWLCMILYLNRFSDVKLLEVGGLVHFNVVH--GEWYRLISSMFLHFNFE 216
Query: 150 HLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGL 209
H+ N+ L+IFGK+VE G++ + + YI +G NFVS L +SVGASGA+FGL
Sbjct: 217 HILMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVS-LSFNTTTISVGASGAIFGL 275
Query: 210 F-AISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQSINHIAHL 268
+I V++ +S ++ K + +GQ ++ V+ + + +IN +AHL
Sbjct: 276 IGSIFVIMYLSKNFNKKM----IGQLLIALVV-----------LIVFSLFMSNINIMAHL 320
Query: 269 SGALFGVFL 277
G + GV +
Sbjct: 321 GGFISGVLI 329
>gi|418327645|ref|ZP_12938790.1| peptidase, S54 family [Staphylococcus epidermidis 14.1.R1.SE]
gi|365232769|gb|EHM73752.1| peptidase, S54 family [Staphylococcus epidermidis 14.1.R1.SE]
Length = 234
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 110/208 (52%), Gaps = 28/208 (13%)
Query: 78 DMISQLELDKPEERRKPKKS----VNGVFWI-ILLNLGLYVADHVFQVRSIKSLYLYHNF 132
+++Q +DK +R P +N V W+ ++L L + + +V + + H
Sbjct: 17 KVLTQNLVDKHMQRFTPITYTLILINIVIWLCMILYLNRFSDVKLLEVGGLVHFNVVH-- 74
Query: 133 PAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLI 192
WY+ +++ F H N+ H+ N+ L+IFGK+VE G++ + + YI +G NFVS L
Sbjct: 75 GEWYRLISSMFLHFNFEHILMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVS-LS 133
Query: 193 LPKNAVSVGASGAVFGLF-AISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSG 251
+ +SVGASGA+FGL +I V++ +S ++ K + +GQ ++ V+
Sbjct: 134 FNTSTISVGASGAIFGLIGSIFVIMYLSKNFNKKM----IGQLLIALVVLI--------- 180
Query: 252 TFIGGYSV--QSINHIAHLSGALFGVFL 277
G+S+ +IN +AHL G + GV +
Sbjct: 181 ----GFSLFMSNINIMAHLGGFISGVLI 204
>gi|239637639|ref|ZP_04678611.1| rhomboid family protein [Staphylococcus warneri L37603]
gi|239596857|gb|EEQ79382.1| rhomboid family protein [Staphylococcus warneri L37603]
Length = 484
Score = 74.3 bits (181), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 130/287 (45%), Gaps = 28/287 (9%)
Query: 2 AQFQFQLATVKPHHSFSFMPIAPLSISHKPFNFLPKSSTIKCLSNSPKLNLPIKLRPLRH 61
FQF T K + S PL + F + + ++ + + L K +
Sbjct: 78 TSFQFYYFTDKTLTTDSLDETYPLKL---KFKIIKEDRDLERVLPNVILTKLFKRNDSKK 134
Query: 62 PSLTLRSRLVCNMSGSDMISQLELDKPEERRKPKKSV----NGVFWI-ILLNLGLYVADH 116
S++ R++++ N LDK +R P + N W+ ++L +
Sbjct: 135 TSVSYRNKVLSNNI---------LDKHMQRFSPITYILIISNVALWLCMILYFNRFSDIK 185
Query: 117 VFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWL 176
+ V + + H WY+ VT+ F H N+ H+ N+ LYIFGK+VE G++ +
Sbjct: 186 LLDVGGLVHFNVVH--GEWYRLVTSMFLHYNFEHILMNMLSLYIFGKIVESVLGSWKMLA 243
Query: 177 SYIFTGAAANFVSWLILPKNAVSVGASGAVFGL----FAISVLVKMSWDWRKILEVLILG 232
Y+F G NFVS L +SVGASGA+FGL FAI L K ++D + I ++LI
Sbjct: 244 IYLFAGIFGNFVS-LSFNTTTISVGASGAIFGLIGSIFAILYLSK-TFDKKVIGQLLIAL 301
Query: 233 QFVV--EKVMEAAQASAGMSGTFIGGYSVQSINHIAHLSGALFGVFL 277
++ M A + G F+GG + I + +++ +F + L
Sbjct: 302 VILIGLSLFMSNINVMAHLGG-FVGGLLITLIGYYFNVNRNIFWILL 347
>gi|418630551|ref|ZP_13193032.1| peptidase, S54 family [Staphylococcus epidermidis VCU128]
gi|374837741|gb|EHS01304.1| peptidase, S54 family [Staphylococcus epidermidis VCU128]
Length = 486
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 76/273 (27%), Positives = 132/273 (48%), Gaps = 31/273 (11%)
Query: 15 HSFSFMPIAPLSISHKPFNF-LPKSSTIKCLSNSPKL-NLPIKLRPLRHPSLTLRSRLVC 72
S+ F +S + N P K LSN L +LPI L+ + +
Sbjct: 78 ESYEFYYFTDKELSKENLNEEKPTKLKFKILSNEQSLKSLPINFLLLKML-INNEDKKTY 136
Query: 73 NMSGSDMISQLELDKPEERRKPKKS----VNGVFWI-ILLNLGLYVADHVFQVRSIKSLY 127
+++Q +DK +R P +N V W+ ++L L + + +V +
Sbjct: 137 LYYKRKVLTQNLVDKHMQRFTPITYTLILINIVIWLCMILYLNRFSDVKLLEVGGLVHFN 196
Query: 128 LYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANF 187
+ H WY+ +++ F H N+ H+ N+ L+IFGK+VE G++ + + YI +G NF
Sbjct: 197 VVH--GEWYRLISSMFLHFNFEHILMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNF 254
Query: 188 VSWLILPKNAVSVGASGAVFGLF-AISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQAS 246
VS L + +SVGASGA+FGL +I V++ +S ++ K + +GQ ++ V+
Sbjct: 255 VS-LSFNTSTISVGASGAIFGLIGSIFVIMYLSKNFNKKM----IGQLLIALVV------ 303
Query: 247 AGMSGTFIGGYSV--QSINHIAHLSGALFGVFL 277
+ G+S+ +IN +AHL G + GV +
Sbjct: 304 -------LIGFSLFMSNINIMAHLGGFISGVLI 329
>gi|445059551|ref|YP_007384955.1| hypothetical protein A284_05970 [Staphylococcus warneri SG1]
gi|443425608|gb|AGC90511.1| hypothetical protein A284_05970 [Staphylococcus warneri SG1]
Length = 484
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 80/145 (55%), Gaps = 9/145 (6%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ VT+ F H N+ H+ N+ LYIFGK+VE G++ + Y+F G NFVS L
Sbjct: 202 WYRLVTSMFLHFNFEHILMNMLSLYIFGKIVESVLGSWKMLAIYLFAGIFGNFVS-LSFN 260
Query: 195 KNAVSVGASGAVFGL----FAISVLVKMSWDWRKILEVLILGQFVV--EKVMEAAQASAG 248
+SVGASGA+FGL FAI L K ++D R I ++LI ++ M A
Sbjct: 261 TTTISVGASGAIFGLIGSIFAILYLSK-TFDKRVIGQLLIALVILIGLSLFMSNINVMAH 319
Query: 249 MSGTFIGGYSVQSINHIAHLSGALF 273
+ G FIGG + I + +++ +F
Sbjct: 320 LGG-FIGGLLITLIGYYFNVNRNIF 343
>gi|420199483|ref|ZP_14705161.1| rhomboid family protein [Staphylococcus epidermidis NIHLM031]
gi|394272265|gb|EJE16734.1| rhomboid family protein [Staphylococcus epidermidis NIHLM031]
Length = 486
Score = 73.9 bits (180), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 125/251 (49%), Gaps = 30/251 (11%)
Query: 36 PKSSTIKCLSNSPKL-NLPIKLRPLRHPSLTLRSRLVCNMSGSDMISQLELDKPEERRKP 94
P K LSN L +LPI L+ + + +++Q +DK +R P
Sbjct: 100 PTKLKFKILSNEQSLKSLPINFLLLKMLINNEDKKTYLHYK-RKVLTQNLVDKHMQRFTP 158
Query: 95 KKS----VNGVFWI-ILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWN 149
+N V W+ ++L L + + +V + + H WY+ +++ F H N+
Sbjct: 159 ITYTLILINIVIWLCMILYLNRFSDVKLLEVGGLVHFNVVH--GEWYRLISSMFLHFNFE 216
Query: 150 HLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGL 209
H+ N+ L+IFGK+VE G++ + + YI +G NFVS L + +SVGASGA+FGL
Sbjct: 217 HILMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVS-LSFNTSTISVGASGAIFGL 275
Query: 210 F-AISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYS--VQSINHIA 266
+I V++ +S ++ K + +GQ ++ V+ + G+S + +IN +A
Sbjct: 276 IGSIFVIMYLSKNFNKKM----IGQLLIALVV-------------LIGFSLFMSNINIMA 318
Query: 267 HLSGALFGVFL 277
HL G + GV +
Sbjct: 319 HLGGFISGVLI 329
>gi|416125288|ref|ZP_11595886.1| rhomboid family protein [Staphylococcus epidermidis FRI909]
gi|420178246|ref|ZP_14684579.1| rhomboid family protein [Staphylococcus epidermidis NIHLM057]
gi|420180055|ref|ZP_14686315.1| rhomboid family protein [Staphylococcus epidermidis NIHLM053]
gi|319400885|gb|EFV89104.1| rhomboid family protein [Staphylococcus epidermidis FRI909]
gi|394246872|gb|EJD92124.1| rhomboid family protein [Staphylococcus epidermidis NIHLM057]
gi|394251487|gb|EJD96572.1| rhomboid family protein [Staphylococcus epidermidis NIHLM053]
Length = 486
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 125/251 (49%), Gaps = 30/251 (11%)
Query: 36 PKSSTIKCLSNSPKL-NLPIKLRPLRHPSLTLRSRLVCNMSGSDMISQLELDKPEERRKP 94
P K LSN L +LPI L+ + + +++Q +DK +R P
Sbjct: 100 PTKLKFKILSNEQSLKSLPINFLLLKML-INNEDKKTYLHYKRKVLTQNLVDKHMQRFTP 158
Query: 95 KKS----VNGVFWI-ILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWN 149
+N V W+ ++L L + + +V + + H WY+ +++ F H N+
Sbjct: 159 ITYTLILINIVIWLCMILYLNRFSDVKLLEVGGLVHFNVVH--GEWYRLISSMFLHFNFE 216
Query: 150 HLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGL 209
H+ N+ L+IFGK+VE G++ + + YI +G NFVS L + +SVGASGA+FGL
Sbjct: 217 HILMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVS-LSFNTSTISVGASGAIFGL 275
Query: 210 F-AISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSV--QSINHIA 266
+I V++ +S ++ K + +GQ ++ V+ + G+S+ +IN +A
Sbjct: 276 IGSIFVIMYLSKNFNKKM----IGQLLIALVV-------------LIGFSLFMSNINIMA 318
Query: 267 HLSGALFGVFL 277
HL G + GV +
Sbjct: 319 HLGGFISGVLI 329
>gi|418614697|ref|ZP_13177659.1| peptidase, S54 family [Staphylococcus epidermidis VCU118]
gi|374819233|gb|EHR83361.1| peptidase, S54 family [Staphylococcus epidermidis VCU118]
Length = 486
Score = 73.6 bits (179), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 125/251 (49%), Gaps = 30/251 (11%)
Query: 36 PKSSTIKCLSNSPKL-NLPIKLRPLRHPSLTLRSRLVCNMSGSDMISQLELDKPEERRKP 94
P K LSN L +LPI L+ + + +++Q +DK +R P
Sbjct: 100 PTKLKFKILSNEQSLKSLPINFLLLKML-INNEDKKTYLHYKRKVLTQNLVDKHMQRFTP 158
Query: 95 KKS----VNGVFWI-ILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWN 149
+N V W+ ++L L + + +V + + H WY+ +++ F H N+
Sbjct: 159 ITYTLILINIVIWLCMILYLNRFSDVKLLEVGGLVHFNVVH--GEWYRLISSMFLHFNFE 216
Query: 150 HLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGL 209
H+ N+ L+IFGK+VE G++ + + YI +G NFVS L + +SVGASGA+FGL
Sbjct: 217 HILMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVS-LSFNTSTISVGASGAIFGL 275
Query: 210 F-AISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYS--VQSINHIA 266
+I V++ +S ++ K + +GQ ++ V+ + G+S + +IN +A
Sbjct: 276 IGSIFVIMYLSKNFNKKM----IGQLLIALVV-------------LIGFSLFMSNINIMA 318
Query: 267 HLSGALFGVFL 277
HL G + GV +
Sbjct: 319 HLGGFISGVLI 329
>gi|418633195|ref|ZP_13195612.1| peptidase, S54 family [Staphylococcus epidermidis VCU129]
gi|420190163|ref|ZP_14696107.1| rhomboid family protein [Staphylococcus epidermidis NIHLM037]
gi|420204465|ref|ZP_14710023.1| rhomboid family protein [Staphylococcus epidermidis NIHLM015]
gi|374840014|gb|EHS03521.1| peptidase, S54 family [Staphylococcus epidermidis VCU129]
gi|394259054|gb|EJE03924.1| rhomboid family protein [Staphylococcus epidermidis NIHLM037]
gi|394273475|gb|EJE17906.1| rhomboid family protein [Staphylococcus epidermidis NIHLM015]
Length = 486
Score = 73.6 bits (179), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 71/251 (28%), Positives = 125/251 (49%), Gaps = 30/251 (11%)
Query: 36 PKSSTIKCLSNSPKL-NLPIKLRPLRHPSLTLRSRLVCNMSGSDMISQLELDKPEERRKP 94
P K LSN L +LPI ++ + + +++Q +DK +R P
Sbjct: 100 PTKLKFKILSNEQSLKSLPINFLLIKML-INNEDKKTYLYYKRKVLTQNLVDKHMQRFTP 158
Query: 95 KKS----VNGVFWI-ILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWN 149
+N V W+ ++L L + + +V + + H WY+ +++ F H N+
Sbjct: 159 ITYTLILINIVIWLCMILYLNRFSDVKLLEVGGLVHFNVVH--GEWYRLISSMFLHFNFE 216
Query: 150 HLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGL 209
H+ N+ L+IFGK+VE G++ + + YI +G NFVS L + +SVGASGA+FGL
Sbjct: 217 HILMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVS-LSFNTSTISVGASGAIFGL 275
Query: 210 F-AISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYS--VQSINHIA 266
+I V++ +S ++ K + +GQ ++ V+ + G+S + +IN +A
Sbjct: 276 IGSIFVIMYLSKNFNKKM----IGQLLIALVV-------------LIGFSLFMSNINIMA 318
Query: 267 HLSGALFGVFL 277
HL G + GV +
Sbjct: 319 HLGGFISGVLI 329
>gi|242242821|ref|ZP_04797266.1| rhomboid family protein [Staphylococcus epidermidis W23144]
gi|420174687|ref|ZP_14681135.1| rhomboid family protein [Staphylococcus epidermidis NIHLM061]
gi|420192300|ref|ZP_14698160.1| rhomboid family protein [Staphylococcus epidermidis NIHLM023]
gi|242233722|gb|EES36034.1| rhomboid family protein [Staphylococcus epidermidis W23144]
gi|394244591|gb|EJD89926.1| rhomboid family protein [Staphylococcus epidermidis NIHLM061]
gi|394261511|gb|EJE06308.1| rhomboid family protein [Staphylococcus epidermidis NIHLM023]
Length = 486
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 75/273 (27%), Positives = 132/273 (48%), Gaps = 31/273 (11%)
Query: 15 HSFSFMPIAPLSISHKPFNF-LPKSSTIKCLSNSPKL-NLPIKLRPLRHPSLTLRSRLVC 72
S+ F +S + N P K LSN L +LPI ++ + +
Sbjct: 78 ESYEFYYFTDKELSKENLNEEKPTKLKFKILSNEQSLKSLPINFLLIKML-INNEDKKTY 136
Query: 73 NMSGSDMISQLELDKPEERRKPKKS----VNGVFWI-ILLNLGLYVADHVFQVRSIKSLY 127
+++Q +DK +R P +N V W+ ++L L + + +V +
Sbjct: 137 LYYKRKVLTQNLVDKHMQRFTPITYTLILINIVIWLCMILYLNRFSDVKLLEVGGLVHFN 196
Query: 128 LYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANF 187
+ H WY+ +++ F H N+ H+ N+ L+IFGK+VE G++ + + YI +G NF
Sbjct: 197 VVH--GEWYRLISSMFLHFNFEHILMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNF 254
Query: 188 VSWLILPKNAVSVGASGAVFGLF-AISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQAS 246
VS L + +SVGASGA+FGL +I V++ +S ++ K + +GQ ++ V+
Sbjct: 255 VS-LSFNTSTISVGASGAIFGLIGSIFVIMYLSKNFNKKM----IGQLLIALVV------ 303
Query: 247 AGMSGTFIGGYSV--QSINHIAHLSGALFGVFL 277
+ G+S+ +IN +AHL G + GV +
Sbjct: 304 -------LIGFSLFMSNINIMAHLGGFISGVLI 329
>gi|420163079|ref|ZP_14669826.1| rhomboid family protein [Staphylococcus epidermidis NIHLM095]
gi|420167946|ref|ZP_14674598.1| rhomboid family protein [Staphylococcus epidermidis NIHLM087]
gi|394234768|gb|EJD80342.1| rhomboid family protein [Staphylococcus epidermidis NIHLM095]
gi|394237974|gb|EJD83460.1| rhomboid family protein [Staphylococcus epidermidis NIHLM087]
Length = 486
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 121/249 (48%), Gaps = 26/249 (10%)
Query: 36 PKSSTIKCLSNSPKL-NLPIKLRPLRHPSLTLRSRLVCNMSGSDMISQLELDKPEERRKP 94
P K +SN L +LPI L+ R + +++Q +DK +R P
Sbjct: 100 PTKLKFKIISNEQSLKSLPINFLLLKMLINNEDKRTYLHYK-RKVLTQNLVDKHMQRFTP 158
Query: 95 KKS----VNGVFWI-ILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWN 149
+N V W+ ++L L + + +V + + H WY+ +++ F H N+
Sbjct: 159 ITYTLILINIVIWLCMILYLNRFSDVKLLEVGGLVHFNVVH--GEWYRLISSMFLHFNFE 216
Query: 150 HLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGL 209
H+ N+ L+IFGK+VE G++ + + YI +G NFVS L +SVGASGA+FGL
Sbjct: 217 HILMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVS-LSFNTTTISVGASGAIFGL 275
Query: 210 F-AISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQSINHIAHL 268
+I V++ +S ++ K + +GQ ++ V+ + + +IN +AHL
Sbjct: 276 IGSIFVIMYLSKNFNKKM----IGQLLIALVV-----------LIVFSLFMSNINIMAHL 320
Query: 269 SGALFGVFL 277
G + GV +
Sbjct: 321 GGFISGVLI 329
>gi|418411961|ref|ZP_12985227.1| hypothetical protein HMPREF9281_00831 [Staphylococcus epidermidis
BVS058A4]
gi|410891544|gb|EKS39341.1| hypothetical protein HMPREF9281_00831 [Staphylococcus epidermidis
BVS058A4]
Length = 486
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 121/249 (48%), Gaps = 26/249 (10%)
Query: 36 PKSSTIKCLSNSPKL-NLPIKLRPLRHPSLTLRSRLVCNMSGSDMISQLELDKPEERRKP 94
P K +SN L +LPI L+ R + +++Q +DK +R P
Sbjct: 100 PTKLKFKIISNEQSLKSLPINFLLLKMLINNEDKRTYLHYK-RKVLTQNLVDKHMQRFTP 158
Query: 95 KKS----VNGVFWI-ILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWN 149
+N V W+ ++L L + + +V + + H WY+ +++ F H N+
Sbjct: 159 ITYTLILINIVIWLCMILYLNRFSDVKLLEVGGLVHFNVVH--GEWYRLISSMFLHFNFE 216
Query: 150 HLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGL 209
H+ N+ L+IFGK+VE G++ + + YI +G NFVS L +SVGASGA+FGL
Sbjct: 217 HILMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVS-LSFNTTTISVGASGAIFGL 275
Query: 210 F-AISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQSINHIAHL 268
+I V++ +S ++ K + +GQ ++ V+ + + +IN +AHL
Sbjct: 276 IGSIFVIMYLSKNFNKKM----IGQLLIALVV-----------LIVFSLFMSNINIMAHL 320
Query: 269 SGALFGVFL 277
G + GV +
Sbjct: 321 GGFISGVLI 329
>gi|418605748|ref|ZP_13169055.1| peptidase, S54 family [Staphylococcus epidermidis VCU041]
gi|420220495|ref|ZP_14725454.1| rhomboid family protein [Staphylococcus epidermidis NIH04008]
gi|420232065|ref|ZP_14736707.1| peptidase, S54 family [Staphylococcus epidermidis NIH051668]
gi|374401451|gb|EHQ72524.1| peptidase, S54 family [Staphylococcus epidermidis VCU041]
gi|394285848|gb|EJE29914.1| rhomboid family protein [Staphylococcus epidermidis NIH04008]
gi|394301787|gb|EJE45241.1| peptidase, S54 family [Staphylococcus epidermidis NIH051668]
Length = 486
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/249 (28%), Positives = 120/249 (48%), Gaps = 26/249 (10%)
Query: 36 PKSSTIKCLSNSPKLN-LPIKLRPLRHPSLTLRSRLVCNMSGSDMISQLELDKPEERRKP 94
P K +SN LN LPI L+ R + +++Q +DK +R P
Sbjct: 100 PIKLKFKIISNEQSLNSLPINFLLLKMLINNEDKRTYLHYK-RKVLTQNLVDKHMQRFTP 158
Query: 95 KKS----VNGVFWI-ILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWN 149
+N V W+ ++L L + + +V + + H WY+ +++ F H N+
Sbjct: 159 ITYTLILINIVIWLCMILYLNRFSDVKLLEVGGLVHFNVVH--GEWYRLISSMFLHFNFE 216
Query: 150 HLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGL 209
H+ N+ L+IFGK+VE G++ + + YI +G NFVS L +SVGASG +FGL
Sbjct: 217 HILMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVS-LSFNTTTISVGASGTIFGL 275
Query: 210 F-AISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQSINHIAHL 268
+I V++ +S ++ K + +GQ ++ V+ + + +IN +AHL
Sbjct: 276 IGSIFVIMYLSKNFNKKM----IGQLLIALVV-----------LIVFSLFMSNINIMAHL 320
Query: 269 SGALFGVFL 277
G + GV +
Sbjct: 321 GGFISGVLI 329
>gi|418325502|ref|ZP_12936708.1| peptidase, S54 family [Staphylococcus epidermidis VCU071]
gi|365228104|gb|EHM69289.1| peptidase, S54 family [Staphylococcus epidermidis VCU071]
Length = 486
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 122/250 (48%), Gaps = 28/250 (11%)
Query: 36 PKSSTIKCLSNSPKL-NLPIKLRPLRHPSLTLRSRLVCNMSGSDMISQLELDKPEERRKP 94
P K +SN L +LPI L+ R + +++Q +DK +R P
Sbjct: 100 PIKLKFKIISNEQSLKSLPINFLLLKMLINNEDKRTYLHYK-RKVLTQNLVDKHMQRFTP 158
Query: 95 KKS----VNGVFWI-ILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWN 149
+N V W+ ++L L + + +V + + H WY+ +++ F H N+
Sbjct: 159 ITYTLILINIVIWLCMILYLNRFSDVKLLEVGGLVHFNVVH--GEWYRLISSMFLHFNFE 216
Query: 150 HLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGL 209
H+ N+ L+IFGK+VE G++ + + YI +G NFVS L +SVGASGA+FGL
Sbjct: 217 HILMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVS-LSFNTTTISVGASGAIFGL 275
Query: 210 F-AISVLVKMSWDW-RKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQSINHIAH 267
+I V++ +S ++ +K++ L++ FV+ + + +IN +AH
Sbjct: 276 IGSIFVIMYLSKNFNKKMIGQLLIALFVL----------------IVFSLFMSNINIMAH 319
Query: 268 LSGALFGVFL 277
L G + GV +
Sbjct: 320 LGGFISGVLI 329
>gi|420184523|ref|ZP_14690632.1| rhomboid family protein [Staphylococcus epidermidis NIHLM040]
gi|394257174|gb|EJE02096.1| rhomboid family protein [Staphylococcus epidermidis NIHLM040]
Length = 486
Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 122/250 (48%), Gaps = 28/250 (11%)
Query: 36 PKSSTIKCLSNSPKL-NLPIKLRPLRHPSLTLRSRLVCNMSGSDMISQLELDKPEERRKP 94
P K +SN L +LPI L+ R + +++Q +DK +R P
Sbjct: 100 PIKLKFKIISNEQSLKSLPINFLLLKMLINNEDKRTYLHYK-RKVLTQNLVDKHMQRFTP 158
Query: 95 KKS----VNGVFWI-ILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWN 149
+N V W+ ++L L + + +V + + H WY+ +++ F H N+
Sbjct: 159 ITYTLILINIVIWLCMILYLNRFSDVKLLEVGGLVHFNVVH--GEWYRLISSMFLHFNFE 216
Query: 150 HLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGL 209
H+ N+ L+IFGK+VE G++ + + YI +G NFVS L +SVGASGA+FGL
Sbjct: 217 HILMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVS-LSFNTTTISVGASGAIFGL 275
Query: 210 F-AISVLVKMSWDW-RKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQSINHIAH 267
+I V++ +S ++ +K++ L++ FV+ + + +IN +AH
Sbjct: 276 IGSIFVIMYLSKNFNKKMIGQLLIALFVL----------------IVFSLFMSNINIMAH 319
Query: 268 LSGALFGVFL 277
L G + GV +
Sbjct: 320 LGGFISGVLI 329
>gi|420216660|ref|ZP_14721861.1| rhomboid family protein, partial [Staphylococcus epidermidis
NIH05001]
gi|394291537|gb|EJE35341.1| rhomboid family protein, partial [Staphylococcus epidermidis
NIH05001]
Length = 326
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 81/144 (56%), Gaps = 17/144 (11%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ +++ F H N+ H+ N+ L+IFGK+VE G++ + + YI +G NFVS L
Sbjct: 42 WYRLISSMFLHFNFEHILMNMLSLFIFGKIVESIIGSWRMLIIYIISGLYGNFVS-LSFN 100
Query: 195 KNAVSVGASGAVFGLF-AISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTF 253
+SVGASGA+FGL +I V++ +S ++ K + +GQ ++ V+
Sbjct: 101 TTTISVGASGAIFGLIGSIFVIMYLSKNFNKKM----IGQLLIALVV-----------LI 145
Query: 254 IGGYSVQSINHIAHLSGALFGVFL 277
+ + +IN +AHL G + GV +
Sbjct: 146 VFSLFMSNINIMAHLGGFISGVLI 169
>gi|418635278|ref|ZP_13197657.1| peptidase, S54 family [Staphylococcus lugdunensis VCU139]
gi|374842000|gb|EHS05452.1| peptidase, S54 family [Staphylococcus lugdunensis VCU139]
Length = 485
Score = 70.5 bits (171), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 81/146 (55%), Gaps = 21/146 (14%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ +T+ F H N+ H+ N+ L+IFGK+VE G + + YI +G NF+S L
Sbjct: 201 WYRLITSMFLHFNFEHILMNMLSLFIFGKIVEAIIGPMKMLILYIISGLFGNFLS-LSFN 259
Query: 195 KNAVSVGASGAVFGLF-AISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTF 253
+ VS GASGA+FGL AI V++ +S K+ ++GQ ++ V+
Sbjct: 260 TDTVSAGASGAIFGLIGAIIVMMIIS----KVYSRKMIGQLLIALVI------------- 302
Query: 254 IGGYS--VQSINHIAHLSGALFGVFL 277
+ G+S + ++N +AHL G + G+ L
Sbjct: 303 LIGFSLLLSNVNIMAHLGGFISGLLL 328
>gi|294084232|ref|YP_003550990.1| rhomboid family protein [Candidatus Puniceispirillum marinum
IMCC1322]
gi|292663805|gb|ADE38906.1| Rhomboid family protein [Candidatus Puniceispirillum marinum
IMCC1322]
Length = 293
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 74/158 (46%), Gaps = 22/158 (13%)
Query: 133 PAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLI 192
PAW T+ F H W H+ N+ +L+IFG VE+ G+ L Y G AA F LI
Sbjct: 69 PAWMTIFTSMFLHGGWMHIGGNMLYLWIFGDNVEDAMGSLKFILFYALCGVAAAFSQGLI 128
Query: 193 LPKNAVS-VGASGAVFGLFAISVLVKMSWDWRKILEV------------LILGQFVVEKV 239
P++ + +GASG + G+ +++ R ++ + L+LG ++ +
Sbjct: 129 APESTIPMIGASGGIAGILGAYIMLHPKASVRTLMVIFVFFRFINLPAWLVLGVWIAGQF 188
Query: 240 MEAAQASAGMSGTFIGGYSVQSINHIAHLSGALFGVFL 277
+ QA +G G + ++AH+ G L G+ L
Sbjct: 189 VAVPQALSGNEG---------GVAYMAHIGGFLAGMAL 217
>gi|73662516|ref|YP_301297.1| hypothetical protein SSP1207 [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|72495031|dbj|BAE18352.1| conserved hypothetical protein [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
Length = 485
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 80/144 (55%), Gaps = 17/144 (11%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ +T+ F H N+ H+ N+ L+IFGK+VE G++ +++ Y+ G NF S L
Sbjct: 201 WYRLITSIFLHYNFEHILMNMLSLFIFGKIVESIVGHWRMFVIYLVAGLFGNFAS-LSFN 259
Query: 195 KNAVSVGASGAVFGLF-AISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTF 253
+ VSVGASGA+FGL AI + + + + L +GQ ++ V+ G+S
Sbjct: 260 TDTVSVGASGAIFGLIGAIFTFMYIGKQFNRKL----IGQLLIVLVI-----MIGLS--- 307
Query: 254 IGGYSVQSINHIAHLSGALFGVFL 277
+Q+IN +AH+ G + G+ +
Sbjct: 308 ---LFMQNINIVAHIGGFIGGLLI 328
>gi|418576075|ref|ZP_13140221.1| hypothetical protein SSME_12770 [Staphylococcus saprophyticus
subsp. saprophyticus KACC 16562]
gi|379325137|gb|EHY92269.1| hypothetical protein SSME_12770 [Staphylococcus saprophyticus
subsp. saprophyticus KACC 16562]
Length = 489
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 80/144 (55%), Gaps = 17/144 (11%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ +T+ F H N+ H+ N+ L+IFGK+VE G++ +++ Y+ G NF S L
Sbjct: 205 WYRLITSIFLHYNFEHILMNMLSLFIFGKIVESIVGHWRMFVIYLVAGLFGNFAS-LSFN 263
Query: 195 KNAVSVGASGAVFGLF-AISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTF 253
+ VSVGASGA+FGL AI + + + + L +GQ ++ V+ G+S
Sbjct: 264 TDTVSVGASGAIFGLIGAIFTFMYIGKQFNRKL----IGQLLIVLVI-----MIGLS--- 311
Query: 254 IGGYSVQSINHIAHLSGALFGVFL 277
+Q+IN +AH+ G + G+ +
Sbjct: 312 ---LFMQNINIVAHIGGFIGGLLI 332
>gi|170290879|ref|YP_001737695.1| rhomboid family protein [Candidatus Korarchaeum cryptofilum OPF8]
gi|170174959|gb|ACB08012.1| Rhomboid family protein [Candidatus Korarchaeum cryptofilum OPF8]
Length = 227
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 77/154 (50%), Gaps = 23/154 (14%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFV-----SW 190
Y+ +T+ F H W HL N+ +L+IFG VE G + Y+F+G +ANF S+
Sbjct: 61 YRLITSIFLHGGWIHLIGNMLYLFIFGDNVEAALGRINYLIFYLFSGISANFAHMIASSF 120
Query: 191 LILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAA------- 243
L +P + +VGASGA+ G+ ++ + +I+ V++LG V + + A
Sbjct: 121 LGMPLDLPAVGASGAISGILGAYLIF---YPRARIITVILLGYLVTLRPISAKYFLIFWF 177
Query: 244 --QASAGMSGTFIGGYSVQSINHIAHLSGALFGV 275
Q G+ G +G + + AH+ G L G+
Sbjct: 178 ILQLIPGILGEAVG------VAYWAHIGGFLVGI 205
>gi|242373854|ref|ZP_04819428.1| S54 family peptidase [Staphylococcus epidermidis M23864:W1]
gi|242348408|gb|EES40010.1| S54 family peptidase [Staphylococcus epidermidis M23864:W1]
Length = 303
Score = 67.8 bits (164), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 74/142 (52%), Gaps = 12/142 (8%)
Query: 85 LDKPEERRKPKKS----VNGVFWI-ILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFV 139
LDK R P +N V W+ ++L L + + V + + H WY+ +
Sbjct: 149 LDKHMHRFTPATYLLIIINVVIWLCMILYLNRFSDVKLLDVGGLVHFNVVHG--EWYRLI 206
Query: 140 TAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVS 199
T+ F H N+ H+ N+ L+IFGK+VE G++ + + Y +G NFVS L + +S
Sbjct: 207 TSMFLHFNFEHILMNMLSLFIFGKIVESIVGSWRMLIIYFISGLFGNFVS-LSFNTSTIS 265
Query: 200 VGASGAVFGL----FAISVLVK 217
VGASGA+FGL FAI L K
Sbjct: 266 VGASGAIFGLIGAIFAIMYLSK 287
>gi|449137772|ref|ZP_21773083.1| Peptidase S54, rhomboid [Rhodopirellula europaea 6C]
gi|448883627|gb|EMB14149.1| Peptidase S54, rhomboid [Rhodopirellula europaea 6C]
Length = 256
Score = 67.4 bits (163), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 119 QVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSY 178
+++ I+ PAW +T F H W H N++FLYIFG VE+ G+FG L Y
Sbjct: 74 EIQEIRQEIGPPAVPAWATLITCMFLHGGWMHFLGNMWFLYIFGDNVEDRLGHFGFALLY 133
Query: 179 IFTGAAANFVSWLILPKNAV-SVGASGAVFGLFA 211
I TG A L P + V ++GASGA+ G+
Sbjct: 134 IGTGVLAGLAHLLSDPASPVPTLGASGAIAGVMG 167
>gi|421612328|ref|ZP_16053438.1| Peptidase S54, rhomboid [Rhodopirellula baltica SH28]
gi|408496892|gb|EKK01441.1| Peptidase S54, rhomboid [Rhodopirellula baltica SH28]
Length = 256
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 119 QVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSY 178
+++ I+ PAW +T F H W H N++FLYIFG VE+ G+FG L Y
Sbjct: 74 EIQEIRQEIGPPAVPAWATLITCMFLHGGWMHFLGNMWFLYIFGDNVEDRLGHFGYALLY 133
Query: 179 IFTGAAANFVSWLILPKNAV-SVGASGAVFGLFA 211
I TG A L P + V ++GASGA+ G+
Sbjct: 134 IGTGVLAGLAHLLSDPASPVPTLGASGAIAGVMG 167
>gi|159481476|ref|XP_001698805.1| rhomboid-like protein [Chlamydomonas reinhardtii]
gi|158273516|gb|EDO99305.1| rhomboid-like protein [Chlamydomonas reinhardtii]
Length = 334
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 50/91 (54%)
Query: 99 NGVFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFL 158
G+ +I +N ++ + ++ I L LY+ AW+QF T++F HAN HLS N+F L
Sbjct: 93 RGLAALIAVNALIFAGAALAKLPPIAGLALYNANGAWWQFATSSFVHANVAHLSRNMFLL 152
Query: 159 YIFGKLVEEEEGNFGLWLSYIFTGAAANFVS 189
+IFG + E G+W +Y+ AN +
Sbjct: 153 WIFGSALRREVTGPGVWFTYVVCALGANMAA 183
>gi|403380902|ref|ZP_10922959.1| rhomboid family protein [Paenibacillus sp. JC66]
Length = 201
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 77/137 (56%), Gaps = 10/137 (7%)
Query: 133 PAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLI 192
P W+++ + F H + HL N F LY+F +E G+F L Y+ +G + + +S+L+
Sbjct: 59 PEWWRYFASMFLHFGFMHLLMNCFALYVFAPPLERMIGSFRYLLFYLLSGFSGSLISYLL 118
Query: 193 LPKNAVSVGASGAVFGLFA----ISVLVKMSWD---WRKILEVLILGQFVVEKVMEAAQA 245
+ + VS GASGAV+G+FA +++ K D + I +LI+G ++ ++ +
Sbjct: 119 MSERTVSAGASGAVYGVFAAYLFLAIFRKDVLDAQSGQTIKTILIVG--LIYSLLPGV-S 175
Query: 246 SAGMSGTFIGGYSVQSI 262
G G FIGG+++ +I
Sbjct: 176 FFGHLGGFIGGFALMAI 192
>gi|32477568|ref|NP_870562.1| hypothetical protein RB12526 [Rhodopirellula baltica SH 1]
gi|417300552|ref|ZP_12087760.1| Peptidase S54, rhomboid [Rhodopirellula baltica WH47]
gi|32448122|emb|CAD77639.1| probable membrane protein [Rhodopirellula baltica SH 1]
gi|327543116|gb|EGF29552.1| Peptidase S54, rhomboid [Rhodopirellula baltica WH47]
Length = 256
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 119 QVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSY 178
+++ I+ PAW +T F H W H N++FLYIFG VE+ G+FG L Y
Sbjct: 74 EIQEIRQEIGPPAVPAWATLITCMFLHGGWMHFLGNMWFLYIFGDNVEDRLGHFGYALLY 133
Query: 179 IFTGAAANFVSWLILPKNAV-SVGASGAVFGLFA 211
I TG A L P + V ++GASGA+ G+
Sbjct: 134 IGTGVLAGLAHLLSDPGSPVPTLGASGAIAGVMG 167
>gi|418619999|ref|ZP_13182810.1| peptidase, S54 family [Staphylococcus hominis VCU122]
gi|374823562|gb|EHR87557.1| peptidase, S54 family [Staphylococcus hominis VCU122]
Length = 485
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 74/139 (53%), Gaps = 7/139 (5%)
Query: 134 AWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLIL 193
WY+ +T+ F H N+ H+ N+ L+IFGK+VE G + + Y+ +G NF S L
Sbjct: 200 EWYRLITSMFLHFNFEHILMNMLSLFIFGKIVETIVGPYKMLGIYLISGLFGNFAS-LSF 258
Query: 194 PKNAVSVGASGAVFGLF-AISVLVKMSWDWRKI----LEVLILGQFVVEKVMEAAQASAG 248
+ +SVGASGA+FGL AI ++ +S + K L V++L V M A
Sbjct: 259 NISTISVGASGAIFGLIGAILTMMYLSKTFNKKMIIQLLVVVLILIFVSLFMSNINLMAH 318
Query: 249 MSGTFIGGYSVQSINHIAH 267
+ G FIGG+ + I + H
Sbjct: 319 LGG-FIGGFLITLIGYYFH 336
>gi|228476169|ref|ZP_04060877.1| rhomboid family protein [Staphylococcus hominis SK119]
gi|228269992|gb|EEK11472.1| rhomboid family protein [Staphylococcus hominis SK119]
Length = 485
Score = 67.0 bits (162), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 74/139 (53%), Gaps = 7/139 (5%)
Query: 134 AWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLIL 193
WY+ +T+ F H N+ H+ N+ L+IFGK+VE G + + Y+ +G NF S L
Sbjct: 200 EWYRLITSMFLHFNFEHILMNMLSLFIFGKIVETIVGPYKMLGIYLISGLFGNFAS-LSF 258
Query: 194 PKNAVSVGASGAVFGLF-AISVLVKMSWDWRKI----LEVLILGQFVVEKVMEAAQASAG 248
+ +SVGASGA+FGL AI ++ +S + K L V++L V M A
Sbjct: 259 NISTISVGASGAIFGLIGAILTMMYLSKTFNKKMIIQLLVVVLILIFVSLFMSNINLMAH 318
Query: 249 MSGTFIGGYSVQSINHIAH 267
+ G FIGG+ + I + H
Sbjct: 319 LGG-FIGGFLITLIGYYFH 336
>gi|314936330|ref|ZP_07843677.1| rhomboid family protein [Staphylococcus hominis subsp. hominis C80]
gi|313654949|gb|EFS18694.1| rhomboid family protein [Staphylococcus hominis subsp. hominis C80]
Length = 485
Score = 67.0 bits (162), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 49/139 (35%), Positives = 74/139 (53%), Gaps = 7/139 (5%)
Query: 134 AWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLIL 193
WY+ +T+ F H N+ H+ N+ L+IFGK+VE G + + Y+ +G NF S L
Sbjct: 200 EWYRLITSMFLHFNFEHILMNMLSLFIFGKIVETIVGPYKMLGIYLISGLFGNFAS-LSF 258
Query: 194 PKNAVSVGASGAVFGLF-AISVLVKMSWDWRKI----LEVLILGQFVVEKVMEAAQASAG 248
+ +SVGASGA+FGL AI ++ +S + K L V++L V M A
Sbjct: 259 NISTISVGASGAIFGLIGAILTMMYLSKTFNKKMIIQLLVVVLILIFVSLFMSNINLMAH 318
Query: 249 MSGTFIGGYSVQSINHIAH 267
+ G FIGG+ + I + H
Sbjct: 319 LGG-FIGGFLITLIGYYFH 336
>gi|70726368|ref|YP_253282.1| hypothetical protein SH1367 [Staphylococcus haemolyticus JCSC1435]
gi|68447092|dbj|BAE04676.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 485
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 87/176 (49%), Gaps = 13/176 (7%)
Query: 43 CLSNSPKLNLPIKLRPLRHPSLTLRSRLVCNMSGSDMISQLELDKPEERRKPKKS----V 98
C+SN+ L+ I L ++L N ++SQ +DK R P +
Sbjct: 107 CISNNNDLHKLIHNNILTKLMFRQDNKL-SNYYKRRVLSQNPIDKHMLRFTPMTYGLIII 165
Query: 99 NGVFWIILLNLGLYVADHVFQVRSIKSLYLYH---NFPAWYQFVTAAFCHANWNHLSSNL 155
N + W+I++ LY+ +H V+ + L H WY+ +T+ F H N+ H+ N+
Sbjct: 166 NVLIWLIMI---LYL-NHFSDVKLLDLGGLVHFNVVHGEWYRLITSMFLHFNFEHILMNM 221
Query: 156 FFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFA 211
L+IFGK+VE G + Y+ +G NF+S L + VSVGASGA+FGL
Sbjct: 222 LSLFIFGKIVESIVGPLRMLGIYVISGLLGNFIS-LSFNLHTVSVGASGAIFGLIG 276
>gi|404417227|ref|ZP_10999031.1| hypothetical protein SARL_05123 [Staphylococcus arlettae CVD059]
gi|403490425|gb|EJY95966.1| hypothetical protein SARL_05123 [Staphylococcus arlettae CVD059]
Length = 480
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 80/144 (55%), Gaps = 17/144 (11%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ +++ F H N+ H+ N+ L+IFGK+VE G++ + + ++F+G ANF S L
Sbjct: 202 WYRLISSIFLHYNFEHILMNMLSLFIFGKIVESIVGHWRMLVIFLFSGLFANFAS-LSFN 260
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFI 254
+ +SVGASGA+FGL I L + KI E ++GQ ++ V+ I
Sbjct: 261 IDTISVGASGAIFGL--IGSLFGFMY-ISKIFERKLVGQLLIALVI------------LI 305
Query: 255 G-GYSVQSINHIAHLSGALFGVFL 277
G + +IN AH+ G + G+F+
Sbjct: 306 GISLFMDNINVWAHIGGFIGGLFI 329
>gi|386319193|ref|YP_006015356.1| rhomboid family protein [Staphylococcus pseudintermedius ED99]
gi|323464364|gb|ADX76517.1| rhomboid family protein [Staphylococcus pseudintermedius ED99]
Length = 479
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 59/99 (59%), Gaps = 4/99 (4%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ +T+ F H + HL N+ L+IFGKLVE G + +YI +G N +S L L
Sbjct: 201 WYRLITSMFLHIEFQHLLLNMLSLFIFGKLVEAFIGPLKMLGTYILSGIIGNLIS-LALI 259
Query: 195 KNAVSVGASGAVFGLFAISV---LVKMSWDWRKILEVLI 230
++S+GASGA+FGL + ++ +D + IL+++I
Sbjct: 260 TTSLSLGASGAIFGLMGALIALMIISRRFDQKVILQMVI 298
>gi|319892596|ref|YP_004149471.1| membrane peptidase [Staphylococcus pseudintermedius HKU10-03]
gi|317162292|gb|ADV05835.1| Putative membrane peptidase, contains TPR repeat domain protein
[Staphylococcus pseudintermedius HKU10-03]
Length = 479
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 59/99 (59%), Gaps = 4/99 (4%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ +T+ F H + HL N+ L+IFGKLVE G + +YI +G N +S L L
Sbjct: 201 WYRLITSMFLHIEFQHLLLNMLSLFIFGKLVEAFIGPLKMLGTYILSGIIGNLIS-LALI 259
Query: 195 KNAVSVGASGAVFGLFAISV---LVKMSWDWRKILEVLI 230
++S+GASGA+FGL + ++ +D + IL+++I
Sbjct: 260 TTSLSLGASGAIFGLMGALIALMIISRRFDQKVILQMVI 298
>gi|440717940|ref|ZP_20898412.1| Peptidase S54, rhomboid [Rhodopirellula baltica SWK14]
gi|436436909|gb|ELP30600.1| Peptidase S54, rhomboid [Rhodopirellula baltica SWK14]
Length = 242
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 119 QVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSY 178
+++ I+ PAW +T F H W H N++FLYIFG VE+ G+FG L Y
Sbjct: 60 EIQEIRQEIGPPAVPAWATLITCMFLHGGWMHFLGNMWFLYIFGDNVEDRLGHFGYALLY 119
Query: 179 IFTGAAANFVSWLILPKNAV-SVGASGAVFGLFA 211
I TG A L P + V ++GASGA+ G+
Sbjct: 120 IGTGVLAGLAHLLSDPGSPVPTLGASGAIAGVMG 153
>gi|418324201|ref|ZP_12935451.1| peptidase, S54 family [Staphylococcus pettenkoferi VCU012]
gi|365227449|gb|EHM68645.1| peptidase, S54 family [Staphylococcus pettenkoferi VCU012]
Length = 479
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ +T+ F H N+ HL N+ L+IFGK+VE G++ + + Y+F G NF S L
Sbjct: 201 WYRLITSMFLHFNFEHLLMNMLSLFIFGKIVESIVGHWRMLVIYLFAGLFGNFAS-LSFN 259
Query: 195 KNAVSVGASGAVFGL 209
+ VS GASGA+FGL
Sbjct: 260 THTVSAGASGAIFGL 274
>gi|354567593|ref|ZP_08986761.1| Peptidase S54, rhomboid domain protein [Fischerella sp. JSC-11]
gi|353542051|gb|EHC11515.1| Peptidase S54, rhomboid domain protein [Fischerella sp. JSC-11]
Length = 224
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 69/130 (53%), Gaps = 5/130 (3%)
Query: 115 DHVFQVRSIKSLYLYHNFPA-WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFG 173
+ Q+ ++ + L NF W T+ F H NW HL SN+ FL++FG +E+ G+F
Sbjct: 40 NQFLQLYAVIPVQLTTNFAGEWTTLFTSQFLHGNWWHLISNMLFLFVFGNNIEDRLGHFK 99
Query: 174 LWLSYIFTGAAANFVSWLILPKNAV-SVGASGAVFGLFAISVLVKMSWDWRKILEVLILG 232
+ Y+ GA A W I + + S+GASGA+FG+ ++ ++ +++ ++ LG
Sbjct: 100 YLIFYLSCGAFAALCQWFISMNSQIPSLGASGAIFGILGAYII---AFPHSRVVTLIFLG 156
Query: 233 QFVVEKVMEA 242
FV + A
Sbjct: 157 IFVTTVRIPA 166
>gi|315658175|ref|ZP_07911047.1| rhomboid family protein [Staphylococcus lugdunensis M23590]
gi|315496504|gb|EFU84827.1| rhomboid family protein [Staphylococcus lugdunensis M23590]
Length = 489
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 73/279 (26%), Positives = 127/279 (45%), Gaps = 54/279 (19%)
Query: 31 PFNFLPKSSTIKCLSNSPKLNLPIK----LRPLRHPSLTLRS-------------RLVCN 73
FNF PK+ S+ P +PI+ L+PL+ + S R + N
Sbjct: 76 KFNFQPKTCDFYYFSDKP---VPIEDLQELQPLKISVKIIASEADAQQCIPNKFLRRLFN 132
Query: 74 MSGSD--------MISQLELDKPEERRKPKK----SVNGVFWI-ILLNLGLYVADHVFQV 120
S +++Q LDK + P ++N V W+ ++L L + + ++
Sbjct: 133 KKDSKTTAYYKKRVLNQNPLDKYMAKFSPATYSLITINIVIWLSMILLLNRFSNIKLLEM 192
Query: 121 RSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIF 180
+ + H WY+ +T+ F H N+ H+ N+ L+IFGK+VE G + + YI
Sbjct: 193 GGLVHFNVVHG--EWYRLITSMFLHFNFEHILMNMLSLFIFGKIVEAIIGPMKMLILYII 250
Query: 181 TGAAANFVSWLILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVM 240
+G NF+S L + VS GASGA+FGL + + + K+ ++GQ ++ V+
Sbjct: 251 SGLFGNFLS-LSFNTDTVSAGASGAIFGLIGAIIAMMII---SKVYSRKMIGQLLIALVI 306
Query: 241 EAAQASAGMSGTFIGGYS--VQSINHIAHLSGALFGVFL 277
+ G+S + ++N +AHL G + G+ L
Sbjct: 307 -------------LIGFSLLLSNVNIMAHLGGFISGLLL 332
>gi|289550680|ref|YP_003471584.1| membrane peptidase [Staphylococcus lugdunensis HKU09-01]
gi|385784306|ref|YP_005760479.1| rhomboid family protein [Staphylococcus lugdunensis N920143]
gi|418413982|ref|ZP_12987198.1| hypothetical protein HMPREF9308_00363 [Staphylococcus lugdunensis
ACS-027-V-Sch2]
gi|289180212|gb|ADC87457.1| Putative membrane peptidase [Staphylococcus lugdunensis HKU09-01]
gi|339894562|emb|CCB53844.1| rhomboid family protein [Staphylococcus lugdunensis N920143]
gi|410877620|gb|EKS25512.1| hypothetical protein HMPREF9308_00363 [Staphylococcus lugdunensis
ACS-027-V-Sch2]
Length = 485
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 77/145 (53%), Gaps = 19/145 (13%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ +T+ F H N+ H+ N+ L+IFGK+VE G + + YI +G NF+S L
Sbjct: 201 WYRLITSMFLHFNFEHILMNMLSLFIFGKIVEAIIGPMKMLILYIISGLFGNFLS-LSFN 259
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFI 254
+ VS GASGA+FGL + + + K+ ++GQ ++ V+ +
Sbjct: 260 TDTVSAGASGAIFGLIGAIIAMMII---SKVYSRKMIGQLLIALVI-------------L 303
Query: 255 GGYS--VQSINHIAHLSGALFGVFL 277
G+S + ++N +AHL G + G+ L
Sbjct: 304 IGFSLLLSNVNIMAHLGGFISGLLL 328
>gi|434407760|ref|YP_007150645.1| putative membrane protein [Cylindrospermum stagnale PCC 7417]
gi|428262015|gb|AFZ27965.1| putative membrane protein [Cylindrospermum stagnale PCC 7417]
Length = 223
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 87/178 (48%), Gaps = 23/178 (12%)
Query: 115 DHVFQVRSIKSLYLYHNFPA-WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFG 173
+ FQ+ ++ L NF W +T+ F H W HL SN+ FL++FG +E+ G+F
Sbjct: 40 EQFFQMYAVIPQELSTNFAGEWTTLITSQFLHGGWWHLISNMVFLWVFGNNIEDRLGHFK 99
Query: 174 LWLSYIFTGAAANFVSWLILPKNAV-SVGASGAVFGLFAISVL-------VKMSWDWRKI 225
+ Y+ GA+A W I +A+ S+GASGA+ G+ +L V + + I
Sbjct: 100 YLIFYLICGASAALCQWFIGMNSAIPSLGASGAIAGVLGAYILWFPQASVVTLVFLGFFI 159
Query: 226 LEV-----LILGQFVVEKVMEA---AQASAGMSGTFIGGYSVQSINHIAHLSGALFGV 275
+ +I+G F ++ ++ QA+A MS + + AH+ G +FG+
Sbjct: 160 TTIRVSAWIIIGLFFIQNLISGFATLQAAANMS------VESGGVAYWAHIGGFVFGI 211
>gi|145596990|ref|YP_001161287.1| rhomboid family protein [Salinispora tropica CNB-440]
gi|145306327|gb|ABP56909.1| Rhomboid family protein [Salinispora tropica CNB-440]
Length = 303
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ VTA F H HL N++ L+I G+ +E G Y+ G N ++LI
Sbjct: 139 WYRLVTAMFLHYGVIHLLLNMYALWILGRTLEASLGPARFLALYLVAGLGGNVAAYLISA 198
Query: 195 KNAVSVGASGAVFGLFAISVLV--KMSWDWRKILEVLIL 231
NA + GAS A+FGLFA +V +M D ++L +L++
Sbjct: 199 PNAATAGASTAIFGLFAALFVVGRRMGRDVSQVLPILVI 237
>gi|224476658|ref|YP_002634264.1| hypothetical protein Sca_1171 [Staphylococcus carnosus subsp.
carnosus TM300]
gi|222421265|emb|CAL28079.1| putative membrane protein [Staphylococcus carnosus subsp. carnosus
TM300]
Length = 486
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 134 AWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLIL 193
WY+ VT+ F H N+ H+ N+ L+IFGKLVE G++ + Y+ +G N VS L +
Sbjct: 200 EWYRLVTSMFLHFNFEHILMNMLSLFIFGKLVEAIVGHWKMLGIYLISGIFGNLVS-LAI 258
Query: 194 PKNAVSVGASGAVFGL 209
+++SVGASGA+FGL
Sbjct: 259 DNSSISVGASGAIFGL 274
>gi|223043140|ref|ZP_03613187.1| rhomboid family protein [Staphylococcus capitis SK14]
gi|417907800|ref|ZP_12551567.1| peptidase, S54 family [Staphylococcus capitis VCU116]
gi|222443351|gb|EEE49449.1| rhomboid family protein [Staphylococcus capitis SK14]
gi|341594887|gb|EGS37565.1| peptidase, S54 family [Staphylococcus capitis VCU116]
Length = 487
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 83/151 (54%), Gaps = 14/151 (9%)
Query: 85 LDKPEERRKPKKSV----NGVFWI-ILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFV 139
LD+ +R P V N + W+ ++L L + + +V + + H WY+ +
Sbjct: 149 LDRHMQRFTPATYVLIITNVIIWLCMILYLNRFSDVKLLEVGGLVHFNVVH--GEWYRLI 206
Query: 140 TAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVS 199
++ F H N+ H+ N+ L+IFGK+VE G++ + + Y +G NFVS L + +S
Sbjct: 207 SSMFLHFNFEHILMNMLSLFIFGKIVESIVGSWRMLVIYFVSGLFGNFVS-LSFNTSTIS 265
Query: 200 VGASGAVFGL----FAISVLVKMSWDWRKIL 226
VGASGA+FGL FAI L K ++D RK++
Sbjct: 266 VGASGAIFGLIGSIFAIMYLSK-TFD-RKVI 294
>gi|314933721|ref|ZP_07841086.1| rhomboid family protein [Staphylococcus caprae C87]
gi|313653871|gb|EFS17628.1| rhomboid family protein [Staphylococcus caprae C87]
Length = 487
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/151 (33%), Positives = 83/151 (54%), Gaps = 14/151 (9%)
Query: 85 LDKPEERRKPKKSV----NGVFWI-ILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFV 139
LD+ +R P V N + W+ ++L L + + +V + + H WY+ +
Sbjct: 149 LDRHMQRFTPATYVLIITNVIIWLCMILYLNRFSDVKLLEVGGLVHFNVVH--GEWYRLI 206
Query: 140 TAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVS 199
++ F H N+ H+ N+ L+IFGK+VE G++ + + Y +G NFVS L + +S
Sbjct: 207 SSMFLHFNFEHILMNMLSLFIFGKIVESIVGSWRMLVIYFVSGLFGNFVS-LSFNTSTIS 265
Query: 200 VGASGAVFGL----FAISVLVKMSWDWRKIL 226
VGASGA+FGL FAI L K ++D RK++
Sbjct: 266 VGASGAIFGLIGSIFAIMYLSK-TFD-RKVI 294
>gi|427707669|ref|YP_007050046.1| rhomboid family protein [Nostoc sp. PCC 7107]
gi|427360174|gb|AFY42896.1| Rhomboid family protein [Nostoc sp. PCC 7107]
Length = 225
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 86/169 (50%), Gaps = 27/169 (15%)
Query: 128 LYHNFPA-WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAAN 186
L +NF W +T+ F H W HL SN+ FL++FG +E+ G+F + Y+ GA A
Sbjct: 53 LTYNFDGEWITLITSQFLHGGWWHLISNMVFLWVFGNNIEDRLGHFKYLIFYLTCGALAA 112
Query: 187 FVSWLILPKNAV-SVGASGAVFGLFA----------ISVLVKMSWDWRKIL--EVLILGQ 233
W I + + S+GASGA+ G+ I+ L+ + + I ++++G
Sbjct: 113 LCQWAIGMNSPIPSLGASGAISGVLGAYLIRFPHARITTLIFLGFFATTISVPALVVIGI 172
Query: 234 FVVEKV---MEAAQASAGMSGTFIGGYSVQS--INHIAHLSGALFGVFL 277
F V+ V + + QA+A M SVQS + + AH+ G +FGV L
Sbjct: 173 FFVQNVISGLASLQAAANM--------SVQSGGVAYWAHIGGFVFGVIL 213
>gi|418952134|ref|ZP_13504176.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-160]
gi|375369792|gb|EHS73653.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-160]
Length = 303
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 79/152 (51%), Gaps = 15/152 (9%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ VT+ F H ++ H+ N+ L+IFGK+VE G++ + Y G NFVS L
Sbjct: 141 WYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVS-LSFN 199
Query: 195 KNAVSVGASGAVFGLF-AISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMS--- 250
+SVGASGA+FGL +I ++ +S + K + LGQ ++ V+ S MS
Sbjct: 200 TTTISVGASGAIFGLIGSIFAMMYVSKTFNKKM----LGQLLISLVILVG-VSLFMSNIN 254
Query: 251 -----GTFIGGYSVQSINHIAHLSGALFGVFL 277
G FIGG + I + ++ +F + L
Sbjct: 255 IVAHIGGFIGGLLITLIGYYYKVNRNIFWILL 286
>gi|417897083|ref|ZP_12541026.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21235]
gi|341840349|gb|EGS81869.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21235]
Length = 372
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 79/152 (51%), Gaps = 15/152 (9%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ VT+ F H ++ H+ N+ L+IFGK+VE G++ + Y G NFVS L
Sbjct: 202 WYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVS-LSFN 260
Query: 195 KNAVSVGASGAVFGLF-AISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMS--- 250
+SVGASGA+FGL +I ++ +S + K + LGQ ++ V+ S MS
Sbjct: 261 TTTISVGASGAIFGLIGSIFAMMYVSKTFNKKM----LGQLLIALVILVG-VSLFMSNIN 315
Query: 251 -----GTFIGGYSVQSINHIAHLSGALFGVFL 277
G FIGG + I + ++ +F + L
Sbjct: 316 IVAHIGGFIGGLLITLIGYYYKVNRNIFWILL 347
>gi|418309099|ref|ZP_12920674.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21194]
gi|365235250|gb|EHM76170.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21194]
Length = 364
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 79/152 (51%), Gaps = 15/152 (9%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ VT+ F H ++ H+ N+ L+IFGK+VE G++ + Y G NFVS L
Sbjct: 202 WYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVS-LSFN 260
Query: 195 KNAVSVGASGAVFGLF-AISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMS--- 250
+SVGASGA+FGL +I ++ +S + K + LGQ ++ V+ S MS
Sbjct: 261 TTTISVGASGAIFGLIGSIFAMMYVSKTFNKKM----LGQLLIALVILVG-VSLFMSNIN 315
Query: 251 -----GTFIGGYSVQSINHIAHLSGALFGVFL 277
G FIGG + I + ++ +F + L
Sbjct: 316 IVAHIGGFIGGLLITLIGYYYKVNRNIFWILL 347
>gi|82751152|ref|YP_416893.1| hypothetical protein SAB1421c [Staphylococcus aureus RF122]
gi|82656683|emb|CAI81110.1| probable membrane protein [Staphylococcus aureus RF122]
Length = 487
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 79/152 (51%), Gaps = 15/152 (9%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ VT+ F H ++ H+ N+ L+IFGK+VE G++ + Y G NFVS L
Sbjct: 202 WYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVS-LSFN 260
Query: 195 KNAVSVGASGAVFGLF-AISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMS--- 250
+SVGASGA+FGL +I ++ +S + K + LGQ ++ V+ S MS
Sbjct: 261 TTTISVGASGAIFGLIGSIFAMMYVSKTFNKKM----LGQLLIALVILVG-VSLFMSNIN 315
Query: 251 -----GTFIGGYSVQSINHIAHLSGALFGVFL 277
G FIGG + I + ++ +F + L
Sbjct: 316 IVAHIGGFIGGLLITLIGYYYKVNRNIFWILL 347
>gi|379021331|ref|YP_005297993.1| putative membrane peptidase, contains TPRrepeat domain
[Staphylococcus aureus subsp. aureus M013]
gi|418562599|ref|ZP_13127056.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21262]
gi|359830640|gb|AEV78618.1| Putative membrane peptidase, contains TPRrepeat domain
[Staphylococcus aureus subsp. aureus M013]
gi|371973703|gb|EHO91051.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21262]
Length = 487
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 79/152 (51%), Gaps = 15/152 (9%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ VT+ F H ++ H+ N+ L+IFGK+VE G++ + Y G NFVS L
Sbjct: 202 WYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVS-LSFN 260
Query: 195 KNAVSVGASGAVFGLF-AISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMS--- 250
+SVGASGA+FGL +I ++ +S + K + LGQ ++ V+ S MS
Sbjct: 261 TTTISVGASGAIFGLIGSIFAMMYVSKTFNKKM----LGQLLISLVILVG-VSLFMSNIN 315
Query: 251 -----GTFIGGYSVQSINHIAHLSGALFGVFL 277
G FIGG + I + ++ +F + L
Sbjct: 316 IVAHIGGFIGGLLITLIGYYYKVNRNIFWILL 347
>gi|418430534|ref|ZP_13003445.1| hypothetical protein MQE_01426 [Staphylococcus aureus subsp. aureus
VRS3a]
gi|387718274|gb|EIK06258.1| hypothetical protein MQE_01426 [Staphylococcus aureus subsp. aureus
VRS3a]
Length = 487
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 79/152 (51%), Gaps = 15/152 (9%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ VT+ F H ++ H+ N+ L+IFGK+VE G++ + Y G NFVS L
Sbjct: 202 WYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVS-LSFN 260
Query: 195 KNAVSVGASGAVFGLF-AISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMS--- 250
+SVGASGA+FGL +I ++ +S + K + LGQ ++ V+ S MS
Sbjct: 261 TTTISVGASGAIFGLIGSIFAMMYVSKTFNKKM----LGQLLIALVILVG-VSLFMSNIN 315
Query: 251 -----GTFIGGYSVQSINHIAHLSGALFGVFL 277
G FIGG + I + ++ +F + L
Sbjct: 316 IVAHIGGFIGGLLITLIGYYYKVNRNIFWILL 347
>gi|221140031|ref|ZP_03564524.1| peptidase [Staphylococcus aureus subsp. aureus str. JKD6009]
gi|384862151|ref|YP_005744871.1| peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus str. JKD6008]
gi|302751380|gb|ADL65557.1| peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus str. JKD6008]
Length = 487
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 79/152 (51%), Gaps = 15/152 (9%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ VT+ F H ++ H+ N+ L+IFGK+VE G++ + Y G NFVS L
Sbjct: 202 WYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVS-LSFN 260
Query: 195 KNAVSVGASGAVFGLF-AISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMS--- 250
+SVGASGA+FGL +I ++ +S + K + LGQ ++ V+ S MS
Sbjct: 261 TTTISVGASGAIFGLIGSIFAMMYVSKTFNKKM----LGQLLIALVILVG-VSLFMSNIN 315
Query: 251 -----GTFIGGYSVQSINHIAHLSGALFGVFL 277
G FIGG + I + ++ +F + L
Sbjct: 316 IVAHIGGFIGGLLITLIGYYYKVNRNIFWILL 347
>gi|258443587|ref|ZP_05691926.1| rhomboid family protein [Staphylococcus aureus A8115]
gi|282893050|ref|ZP_06301284.1| peptidase [Staphylococcus aureus A8117]
gi|443635576|ref|ZP_21119704.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21236]
gi|257850993|gb|EEV74936.1| rhomboid family protein [Staphylococcus aureus A8115]
gi|282764368|gb|EFC04494.1| peptidase [Staphylococcus aureus A8117]
gi|443409217|gb|ELS67715.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21236]
Length = 487
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 79/152 (51%), Gaps = 15/152 (9%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ VT+ F H ++ H+ N+ L+IFGK+VE G++ + Y G NFVS L
Sbjct: 202 WYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVS-LSFN 260
Query: 195 KNAVSVGASGAVFGLF-AISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMS--- 250
+SVGASGA+FGL +I ++ +S + K + LGQ ++ V+ S MS
Sbjct: 261 TTTISVGASGAIFGLIGSIFAMMYVSKTFNKKM----LGQLLIALVILVG-VSLFMSNIN 315
Query: 251 -----GTFIGGYSVQSINHIAHLSGALFGVFL 277
G FIGG + I + ++ +F + L
Sbjct: 316 IVAHIGGFIGGLLITLIGYYYKVNRNIFWILL 347
>gi|418906494|ref|ZP_13460520.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC345D]
gi|418928899|ref|ZP_13482785.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1612]
gi|377738811|gb|EHT62820.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1612]
gi|377763399|gb|EHT87255.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC345D]
Length = 470
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 79/152 (51%), Gaps = 15/152 (9%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ VT+ F H ++ H+ N+ L+IFGK+VE G++ + Y G NFVS L
Sbjct: 185 WYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVS-LSFN 243
Query: 195 KNAVSVGASGAVFGLF-AISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMS--- 250
+SVGASGA+FGL +I ++ +S + K + LGQ ++ V+ S MS
Sbjct: 244 TTTISVGASGAIFGLIGSIFAMMYVSKTFNKKM----LGQLLIALVILVG-VSLFMSNIN 298
Query: 251 -----GTFIGGYSVQSINHIAHLSGALFGVFL 277
G FIGG + I + ++ +F + L
Sbjct: 299 IVAHIGGFIGGLLITLIGYYYKVNRNIFWILL 330
>gi|418313141|ref|ZP_12924635.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21334]
gi|365236412|gb|EHM77301.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21334]
Length = 487
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 79/152 (51%), Gaps = 15/152 (9%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ VT+ F H ++ H+ N+ L+IFGK+VE G++ + Y G NFVS L
Sbjct: 202 WYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVS-LSFN 260
Query: 195 KNAVSVGASGAVFGLF-AISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMS--- 250
+SVGASGA+FGL +I ++ +S + K + LGQ ++ V+ S MS
Sbjct: 261 TTTISVGASGAIFGLIGSIFAMMYVSKTFNKKM----LGQLLIALVILVG-VSLFMSNIN 315
Query: 251 -----GTFIGGYSVQSINHIAHLSGALFGVFL 277
G FIGG + I + ++ +F + L
Sbjct: 316 IVAHIGGFIGGLLITLIGYYYKVNRNIFWILL 347
>gi|384867478|ref|YP_005747674.1| rhomboid family protein [Staphylococcus aureus subsp. aureus TCH60]
gi|417901080|ref|ZP_12544957.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21266]
gi|418652792|ref|ZP_13214755.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-99]
gi|418955633|ref|ZP_13507570.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-189]
gi|312437983|gb|ADQ77054.1| rhomboid family protein [Staphylococcus aureus subsp. aureus TCH60]
gi|341846239|gb|EGS87436.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21266]
gi|375020960|gb|EHS14467.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-99]
gi|375370719|gb|EHS74517.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-189]
Length = 426
Score = 64.7 bits (156), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 79/152 (51%), Gaps = 15/152 (9%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ VT+ F H ++ H+ N+ L+IFGK+VE G++ + Y G NFVS L
Sbjct: 141 WYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVS-LSFN 199
Query: 195 KNAVSVGASGAVFGLF-AISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMS--- 250
+SVGASGA+FGL +I ++ +S + K + LGQ ++ V+ S MS
Sbjct: 200 TTTISVGASGAIFGLIGSIFAMMYVSKTFNKKM----LGQLLIALVILVG-VSLFMSNIN 254
Query: 251 -----GTFIGGYSVQSINHIAHLSGALFGVFL 277
G FIGG + I + ++ +F + L
Sbjct: 255 IVAHIGGFIGGLLITLIGYYYKVNRNIFWILL 286
>gi|344940121|ref|ZP_08779409.1| Rhomboid family protein [Methylobacter tundripaludum SV96]
gi|344261313|gb|EGW21584.1| Rhomboid family protein [Methylobacter tundripaludum SV96]
Length = 229
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 132 FPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWL 191
F + F+T+ F H NW HL N++FL+IFG VE+ G + Y+ G A F+ WL
Sbjct: 62 FDGYLSFLTSLFLHGNWPHLIMNMWFLWIFGDNVEDRMGRLPFLVFYLACGLLATFLQWL 121
Query: 192 ILPKNAVS-VGASGAVFGLFA 211
P A+ VGASGA+ G+ A
Sbjct: 122 FDPNLAIPVVGASGAIAGVLA 142
>gi|418931854|ref|ZP_13485689.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1750]
gi|377713032|gb|EHT37245.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1750]
Length = 470
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 79/152 (51%), Gaps = 15/152 (9%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ VT+ F H ++ H+ N+ L+IFGK+VE G++ + Y G NFVS L
Sbjct: 185 WYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVS-LSFN 243
Query: 195 KNAVSVGASGAVFGLF-AISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMS--- 250
+SVGASGA+FGL +I ++ +S + K + LGQ ++ V+ S MS
Sbjct: 244 TTTISVGASGAIFGLIGSIFAMMYVSKTFNKKM----LGQLLIALVILVG-VSLFMSNIN 298
Query: 251 -----GTFIGGYSVQSINHIAHLSGALFGVFL 277
G FIGG + I + ++ +F + L
Sbjct: 299 IVAHIGGFIGGLLITLIGYYYKVNRNIFWILL 330
>gi|386831159|ref|YP_006237813.1| hypothetical protein SAEMRSA15_14690 [Staphylococcus aureus subsp.
aureus HO 5096 0412]
gi|417798923|ref|ZP_12446077.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21310]
gi|418654972|ref|ZP_13216857.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-105]
gi|334275085|gb|EGL93386.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21310]
gi|375038535|gb|EHS31510.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-105]
gi|385196551|emb|CCG16180.1| putative membrane protein [Staphylococcus aureus subsp. aureus HO
5096 0412]
Length = 487
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 79/152 (51%), Gaps = 15/152 (9%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ VT+ F H ++ H+ N+ L+IFGK+VE G++ + Y G NFVS L
Sbjct: 202 WYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVS-LSFN 260
Query: 195 KNAVSVGASGAVFGLF-AISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMS--- 250
+SVGASGA+FGL +I ++ +S + K + LGQ ++ V+ S MS
Sbjct: 261 TTTISVGASGAIFGLIGSIFAMMYVSKTFNKKM----LGQLLIALVILVG-VSLFMSNIN 315
Query: 251 -----GTFIGGYSVQSINHIAHLSGALFGVFL 277
G FIGG + I + ++ +F + L
Sbjct: 316 IVAHIGGFIGGLLITLIGYYYKVNRNIFWILL 347
>gi|15924539|ref|NP_372073.1| hypothetical protein SAV1549 [Staphylococcus aureus subsp. aureus
Mu50]
gi|15927129|ref|NP_374662.1| hypothetical protein SA1379 [Staphylococcus aureus subsp. aureus
N315]
gi|57651942|ref|YP_186446.1| rhomboid family protein [Staphylococcus aureus subsp. aureus COL]
gi|87160848|ref|YP_494204.1| rhomboid family peptidase [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|151221664|ref|YP_001332486.1| peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus str. Newman]
gi|156979867|ref|YP_001442126.1| hypothetical protein SAHV_1536 [Staphylococcus aureus subsp. aureus
Mu3]
gi|161509778|ref|YP_001575437.1| peptidase [Staphylococcus aureus subsp. aureus USA300_TCH1516]
gi|253314920|ref|ZP_04838133.1| rhomboid family peptidase [Staphylococcus aureus subsp. aureus str.
CF-Marseille]
gi|255006335|ref|ZP_05144936.2| rhomboid family peptidase [Staphylococcus aureus subsp. aureus
Mu50-omega]
gi|257425674|ref|ZP_05602098.1| rhomboid family peptidase [Staphylococcus aureus subsp. aureus
55/2053]
gi|257428335|ref|ZP_05604733.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
65-1322]
gi|257430972|ref|ZP_05607352.1| peptidase [Staphylococcus aureus subsp. aureus 68-397]
gi|257433660|ref|ZP_05610018.1| rhomboid family peptidase [Staphylococcus aureus subsp. aureus
E1410]
gi|257436574|ref|ZP_05612618.1| peptidase [Staphylococcus aureus subsp. aureus M876]
gi|258437381|ref|ZP_05689365.1| peptidase [Staphylococcus aureus A9299]
gi|258450622|ref|ZP_05698684.1| peptidase [Staphylococcus aureus A5948]
gi|262049127|ref|ZP_06022004.1| hypothetical protein SAD30_0284 [Staphylococcus aureus D30]
gi|262051211|ref|ZP_06023435.1| hypothetical protein SA930_1642 [Staphylococcus aureus 930918-3]
gi|269203177|ref|YP_003282446.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ED98]
gi|282911187|ref|ZP_06318989.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282914356|ref|ZP_06322142.1| rhomboid family protein [Staphylococcus aureus subsp. aureus M899]
gi|282916819|ref|ZP_06324577.1| peptidase [Staphylococcus aureus subsp. aureus D139]
gi|282919325|ref|ZP_06327060.1| peptidase [Staphylococcus aureus subsp. aureus C427]
gi|282920098|ref|ZP_06327823.1| peptidase [Staphylococcus aureus A9765]
gi|282924650|ref|ZP_06332318.1| peptidase [Staphylococcus aureus subsp. aureus C101]
gi|283770625|ref|ZP_06343517.1| peptidase [Staphylococcus aureus subsp. aureus H19]
gi|284024608|ref|ZP_06379006.1| rhomboid family protein [Staphylococcus aureus subsp. aureus 132]
gi|293503430|ref|ZP_06667277.1| peptidase [Staphylococcus aureus subsp. aureus 58-424]
gi|293510447|ref|ZP_06669153.1| rhomboid family protein [Staphylococcus aureus subsp. aureus M809]
gi|293530987|ref|ZP_06671669.1| rhomboid family protein [Staphylococcus aureus subsp. aureus M1015]
gi|294848580|ref|ZP_06789326.1| peptidase [Staphylococcus aureus A9754]
gi|304380862|ref|ZP_07363522.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ATCC
BAA-39]
gi|384547782|ref|YP_005737035.1| membrane protein [Staphylococcus aureus subsp. aureus ED133]
gi|384870090|ref|YP_005752804.1| Peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus T0131]
gi|385781834|ref|YP_005758005.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
11819-97]
gi|387143156|ref|YP_005731549.1| hypothetical protein SATW20_15450 [Staphylococcus aureus subsp.
aureus TW20]
gi|415686263|ref|ZP_11450400.1| S54 family peptidase [Staphylococcus aureus subsp. aureus CGS01]
gi|416840018|ref|ZP_11903337.1| rhomboid family peptidase [Staphylococcus aureus O11]
gi|416845827|ref|ZP_11906228.1| rhomboid family peptidase [Staphylococcus aureus O46]
gi|417654442|ref|ZP_12304161.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21193]
gi|417797331|ref|ZP_12444527.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21305]
gi|417892437|ref|ZP_12536486.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21201]
gi|417905331|ref|ZP_12549142.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21269]
gi|418277349|ref|ZP_12891936.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21178]
gi|418285050|ref|ZP_12897750.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21209]
gi|418316423|ref|ZP_12927861.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21340]
gi|418319401|ref|ZP_12930781.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21232]
gi|418321319|ref|ZP_12932665.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus VCU006]
gi|418569512|ref|ZP_13133838.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21283]
gi|418574454|ref|ZP_13138623.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21333]
gi|418579474|ref|ZP_13143569.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1114]
gi|418599967|ref|ZP_13163441.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21343]
gi|418641900|ref|ZP_13204105.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-24]
gi|418645086|ref|ZP_13207214.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-55]
gi|418646803|ref|ZP_13208896.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-88]
gi|418650585|ref|ZP_13212603.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-91]
gi|418658392|ref|ZP_13220120.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-111]
gi|418875489|ref|ZP_13429745.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC93]
gi|418903856|ref|ZP_13457897.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1770]
gi|418912160|ref|ZP_13466141.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG547]
gi|418914647|ref|ZP_13468619.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|418925809|ref|ZP_13479711.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG2018]
gi|418948536|ref|ZP_13500834.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-157]
gi|419773145|ref|ZP_14299156.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus CO-23]
gi|421148571|ref|ZP_15608231.1| peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus str. Newbould 305]
gi|422742667|ref|ZP_16796670.1| peptidase, S54 family protein [Staphylococcus aureus subsp. aureus
MRSA177]
gi|424768990|ref|ZP_18196227.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus CM05]
gi|424785384|ref|ZP_18212187.1| rhomboid family serine protease [Staphylococcus aureus CN79]
gi|440707269|ref|ZP_20887968.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21282]
gi|443640018|ref|ZP_21124018.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21196]
gi|448743065|ref|ZP_21724979.1| Integral membrane protein (Rhomboid family) [Staphylococcus aureus
KT/Y21]
gi|13701347|dbj|BAB42641.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
N315]
gi|14247320|dbj|BAB57711.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
Mu50]
gi|57286128|gb|AAW38222.1| rhomboid family protein [Staphylococcus aureus subsp. aureus COL]
gi|87126822|gb|ABD21336.1| peptidase, rhomboid family [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|150374464|dbj|BAF67724.1| peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus str. Newman]
gi|156722002|dbj|BAF78419.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
Mu3]
gi|160368587|gb|ABX29558.1| S54 family peptidase [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|257271368|gb|EEV03514.1| rhomboid family peptidase [Staphylococcus aureus subsp. aureus
55/2053]
gi|257275176|gb|EEV06663.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
65-1322]
gi|257278402|gb|EEV09038.1| peptidase [Staphylococcus aureus subsp. aureus 68-397]
gi|257281753|gb|EEV11890.1| rhomboid family peptidase [Staphylococcus aureus subsp. aureus
E1410]
gi|257283925|gb|EEV14048.1| peptidase [Staphylococcus aureus subsp. aureus M876]
gi|257848586|gb|EEV72574.1| peptidase [Staphylococcus aureus A9299]
gi|257861780|gb|EEV84579.1| peptidase [Staphylococcus aureus A5948]
gi|259160848|gb|EEW45868.1| hypothetical protein SA930_1642 [Staphylococcus aureus 930918-3]
gi|259162796|gb|EEW47361.1| hypothetical protein SAD30_0284 [Staphylococcus aureus D30]
gi|262075467|gb|ACY11440.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ED98]
gi|269941039|emb|CBI49423.1| putative membrane protein [Staphylococcus aureus subsp. aureus
TW20]
gi|282313485|gb|EFB43880.1| peptidase [Staphylococcus aureus subsp. aureus C101]
gi|282317135|gb|EFB47509.1| peptidase [Staphylococcus aureus subsp. aureus C427]
gi|282319306|gb|EFB49658.1| peptidase [Staphylococcus aureus subsp. aureus D139]
gi|282321537|gb|EFB51862.1| rhomboid family protein [Staphylococcus aureus subsp. aureus M899]
gi|282324882|gb|EFB55192.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282594446|gb|EFB99431.1| peptidase [Staphylococcus aureus A9765]
gi|283460772|gb|EFC07862.1| peptidase [Staphylococcus aureus subsp. aureus H19]
gi|290920255|gb|EFD97321.1| rhomboid family protein [Staphylococcus aureus subsp. aureus M1015]
gi|291095096|gb|EFE25361.1| peptidase [Staphylococcus aureus subsp. aureus 58-424]
gi|291466811|gb|EFF09331.1| rhomboid family protein [Staphylococcus aureus subsp. aureus M809]
gi|294824606|gb|EFG41029.1| peptidase [Staphylococcus aureus A9754]
gi|298694831|gb|ADI98053.1| probable membrane protein [Staphylococcus aureus subsp. aureus
ED133]
gi|304340589|gb|EFM06523.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ATCC
BAA-39]
gi|315198756|gb|EFU29084.1| S54 family peptidase [Staphylococcus aureus subsp. aureus CGS01]
gi|320144103|gb|EFW35872.1| peptidase, S54 family protein [Staphylococcus aureus subsp. aureus
MRSA177]
gi|323440447|gb|EGA98159.1| rhomboid family peptidase [Staphylococcus aureus O11]
gi|323443221|gb|EGB00839.1| rhomboid family peptidase [Staphylococcus aureus O46]
gi|329314225|gb|AEB88638.1| Peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus T0131]
gi|329730828|gb|EGG67206.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21193]
gi|334266823|gb|EGL85293.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21305]
gi|341843607|gb|EGS84829.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21269]
gi|341857602|gb|EGS98414.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21201]
gi|364522823|gb|AEW65573.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
11819-97]
gi|365172061|gb|EHM62806.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21209]
gi|365173639|gb|EHM64128.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21178]
gi|365225551|gb|EHM66794.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus VCU006]
gi|365240520|gb|EHM81292.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21232]
gi|365241107|gb|EHM81862.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21340]
gi|371979181|gb|EHO96416.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21333]
gi|371985641|gb|EHP02702.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21283]
gi|374395556|gb|EHQ66819.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21343]
gi|375018355|gb|EHS11935.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-24]
gi|375023919|gb|EHS17364.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-55]
gi|375027871|gb|EHS21229.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-91]
gi|375032097|gb|EHS25352.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-88]
gi|375038662|gb|EHS31625.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-111]
gi|375371869|gb|EHS75629.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-157]
gi|377697501|gb|EHT21856.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1114]
gi|377722417|gb|EHT46543.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG547]
gi|377742871|gb|EHT66856.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1770]
gi|377744878|gb|EHT68855.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG2018]
gi|377758149|gb|EHT82037.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|377769561|gb|EHT93329.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC93]
gi|383972969|gb|EID88990.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus CO-23]
gi|394331714|gb|EJE57797.1| peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus str. Newbould 305]
gi|402348381|gb|EJU83373.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus CM05]
gi|408423672|emb|CCJ11083.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408425662|emb|CCJ13049.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408427649|emb|CCJ15012.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408429638|emb|CCJ26803.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408431625|emb|CCJ18940.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408433619|emb|CCJ20904.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408435611|emb|CCJ22871.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|408437595|emb|CCJ24838.1| Putative uncharacterized protein [Staphylococcus aureus subsp.
aureus ST228]
gi|421956794|gb|EKU09123.1| rhomboid family serine protease [Staphylococcus aureus CN79]
gi|436506025|gb|ELP41864.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21282]
gi|443406293|gb|ELS64877.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21196]
gi|445563752|gb|ELY19909.1| Integral membrane protein (Rhomboid family) [Staphylococcus aureus
KT/Y21]
Length = 487
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 79/152 (51%), Gaps = 15/152 (9%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ VT+ F H ++ H+ N+ L+IFGK+VE G++ + Y G NFVS L
Sbjct: 202 WYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVS-LSFN 260
Query: 195 KNAVSVGASGAVFGLF-AISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMS--- 250
+SVGASGA+FGL +I ++ +S + K + LGQ ++ V+ S MS
Sbjct: 261 TTTISVGASGAIFGLIGSIFAMMYVSKTFNKKM----LGQLLIALVILVG-VSLFMSNIN 315
Query: 251 -----GTFIGGYSVQSINHIAHLSGALFGVFL 277
G FIGG + I + ++ +F + L
Sbjct: 316 IVAHIGGFIGGLLITLIGYYYKVNRNIFWILL 347
>gi|21283230|ref|NP_646318.1| hypothetical protein MW1501 [Staphylococcus aureus subsp. aureus
MW2]
gi|49486385|ref|YP_043606.1| hypothetical protein SAS1487 [Staphylococcus aureus subsp. aureus
MSSA476]
gi|253732202|ref|ZP_04866367.1| S54 family peptidase [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|297207732|ref|ZP_06924167.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|300911813|ref|ZP_07129256.1| rhomboid family protein [Staphylococcus aureus subsp. aureus TCH70]
gi|418934519|ref|ZP_13488341.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC128]
gi|418988616|ref|ZP_13536288.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1835]
gi|448740624|ref|ZP_21722600.1| Integral membrane protein (Rhomboid family) [Staphylococcus aureus
KT/314250]
gi|21204670|dbj|BAB95366.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MW2]
gi|49244828|emb|CAG43288.1| putative membrane protein [Staphylococcus aureus subsp. aureus
MSSA476]
gi|253723991|gb|EES92720.1| S54 family peptidase [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|296887749|gb|EFH26647.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|300886059|gb|EFK81261.1| rhomboid family protein [Staphylococcus aureus subsp. aureus TCH70]
gi|377717709|gb|EHT41884.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1835]
gi|377770613|gb|EHT94374.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC128]
gi|445548591|gb|ELY16841.1| Integral membrane protein (Rhomboid family) [Staphylococcus aureus
KT/314250]
Length = 487
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 79/152 (51%), Gaps = 15/152 (9%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ VT+ F H ++ H+ N+ L+IFGK+VE G++ + Y G NFVS L
Sbjct: 202 WYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVS-LSFN 260
Query: 195 KNAVSVGASGAVFGLF-AISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMS--- 250
+SVGASGA+FGL +I ++ +S + K + LGQ ++ V+ S MS
Sbjct: 261 TTTISVGASGAIFGLIGSIFAMMYVSKTFNKKM----LGQLLIALVILVG-VSLFMSNIN 315
Query: 251 -----GTFIGGYSVQSINHIAHLSGALFGVFL 277
G FIGG + I + ++ +F + L
Sbjct: 316 IVAHIGGFIGGLLITLIGYYYKVNRNIFWILL 347
>gi|253733201|ref|ZP_04867366.1| S54 family peptidase [Staphylococcus aureus subsp. aureus TCH130]
gi|417897863|ref|ZP_12541789.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21259]
gi|253728741|gb|EES97470.1| S54 family peptidase [Staphylococcus aureus subsp. aureus TCH130]
gi|341849365|gb|EGS90508.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21259]
Length = 487
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 79/152 (51%), Gaps = 15/152 (9%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ VT+ F H ++ H+ N+ L+IFGK+VE G++ + Y G NFVS L
Sbjct: 202 WYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVS-LSFN 260
Query: 195 KNAVSVGASGAVFGLF-AISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMS--- 250
+SVGASGA+FGL +I ++ +S + K + LGQ ++ V+ S MS
Sbjct: 261 TTTISVGASGAIFGLIGSIFAMMYVSKTFNKKM----LGQLLIALVILVG-VSLFMSNIN 315
Query: 251 -----GTFIGGYSVQSINHIAHLSGALFGVFL 277
G FIGG + I + ++ +F + L
Sbjct: 316 IVAHIGGFIGGLLITLIGYYYKVNRNIFWILL 347
>gi|384550376|ref|YP_005739628.1| peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus JKD6159]
gi|302333225|gb|ADL23418.1| peptidase, rhomboid family protein [Staphylococcus aureus subsp.
aureus JKD6159]
Length = 487
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 79/152 (51%), Gaps = 15/152 (9%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ VT+ F H ++ H+ N+ L+IFGK+VE G++ + Y G NFVS L
Sbjct: 202 WYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVS-LSFN 260
Query: 195 KNAVSVGASGAVFGLF-AISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMS--- 250
+SVGASGA+FGL +I ++ +S + K + LGQ ++ V+ S MS
Sbjct: 261 TTTISVGASGAIFGLIGSIFAMMYVSKTFNKKM----LGQLLIALVILVG-VSLFMSNIN 315
Query: 251 -----GTFIGGYSVQSINHIAHLSGALFGVFL 277
G FIGG + I + ++ +F + L
Sbjct: 316 IVAHIGGFIGGLLITLIGYYYKVNRNIFWILL 347
>gi|258423202|ref|ZP_05686095.1| conserved hypothetical protein [Staphylococcus aureus A9635]
gi|417889989|ref|ZP_12534068.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21200]
gi|418284049|ref|ZP_12896781.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21202]
gi|418558986|ref|ZP_13123533.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21252]
gi|418889364|ref|ZP_13443497.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1524]
gi|257846652|gb|EEV70673.1| conserved hypothetical protein [Staphylococcus aureus A9635]
gi|341855682|gb|EGS96526.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21200]
gi|365164913|gb|EHM56743.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21202]
gi|371976336|gb|EHO93626.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21252]
gi|377752872|gb|EHT76790.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1524]
Length = 487
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 79/152 (51%), Gaps = 15/152 (9%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ VT+ F H ++ H+ N+ L+IFGK+VE G++ + Y G NFVS L
Sbjct: 202 WYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVS-LSFN 260
Query: 195 KNAVSVGASGAVFGLF-AISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMS--- 250
+SVGASGA+FGL +I ++ +S + K + LGQ ++ V+ S MS
Sbjct: 261 TTTISVGASGAIFGLIGSIFAMMYVSKTFNKKM----LGQLLIALVILVG-VSLFMSNIN 315
Query: 251 -----GTFIGGYSVQSINHIAHLSGALFGVFL 277
G FIGG + I + ++ +F + L
Sbjct: 316 IVAHIGGFIGGLLITLIGYYYKVNRNIFWILL 347
>gi|296275094|ref|ZP_06857601.1| rhomboid family protein [Staphylococcus aureus subsp. aureus MR1]
Length = 487
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 79/152 (51%), Gaps = 15/152 (9%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ VT+ F H ++ H+ N+ L+IFGK+VE G++ + Y G NFVS L
Sbjct: 202 WYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVS-LSFN 260
Query: 195 KNAVSVGASGAVFGLF-AISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMS--- 250
+SVGASGA+FGL +I ++ +S + K + LGQ ++ V+ S MS
Sbjct: 261 TTTISVGASGAIFGLIGSIFAMMYVSKTFNKKM----LGQLLIALVILVG-VSLFMSNIN 315
Query: 251 -----GTFIGGYSVQSINHIAHLSGALFGVFL 277
G FIGG + I + ++ +F + L
Sbjct: 316 IVAHIGGFIGGLLITLIGYYYKVNRNIFWILL 347
>gi|148268033|ref|YP_001246976.1| rhomboid family protein [Staphylococcus aureus subsp. aureus JH9]
gi|150394101|ref|YP_001316776.1| rhomboid family protein [Staphylococcus aureus subsp. aureus JH1]
gi|257793625|ref|ZP_05642604.1| rhomboid family protein [Staphylococcus aureus A9781]
gi|258411075|ref|ZP_05681355.1| rhomboid family protein [Staphylococcus aureus A9763]
gi|258420121|ref|ZP_05683076.1| rhomboid family protein [Staphylococcus aureus A9719]
gi|258446794|ref|ZP_05694948.1| rhomboid family protein [Staphylococcus aureus A6300]
gi|258448708|ref|ZP_05696820.1| rhomboid family protein [Staphylococcus aureus A6224]
gi|258453525|ref|ZP_05701503.1| rhomboid family protein [Staphylococcus aureus A5937]
gi|282928182|ref|ZP_06335787.1| rhomboid family protein [Staphylococcus aureus A10102]
gi|295406672|ref|ZP_06816477.1| rhomboid family protein [Staphylococcus aureus A8819]
gi|297245746|ref|ZP_06929611.1| rhomboid family protein [Staphylococcus aureus A8796]
gi|384864770|ref|YP_005750129.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ECT-R
2]
gi|387150692|ref|YP_005742256.1| Putative membrane peptidase, contains TPR repeat domain
[Staphylococcus aureus 04-02981]
gi|415692667|ref|ZP_11454587.1| Rhomboid family protein [Staphylococcus aureus subsp. aureus CGS03]
gi|417651337|ref|ZP_12301100.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21172]
gi|418424698|ref|ZP_12997812.1| hypothetical protein MQA_00546 [Staphylococcus aureus subsp. aureus
VRS1]
gi|418427692|ref|ZP_13000697.1| hypothetical protein MQC_00501 [Staphylococcus aureus subsp. aureus
VRS2]
gi|418433677|ref|ZP_13006269.1| hypothetical protein MQG_01236 [Staphylococcus aureus subsp. aureus
VRS4]
gi|418437172|ref|ZP_13008968.1| hypothetical protein MQI_01256 [Staphylococcus aureus subsp. aureus
VRS5]
gi|418440072|ref|ZP_13011773.1| hypothetical protein MQK_01111 [Staphylococcus aureus subsp. aureus
VRS6]
gi|418443090|ref|ZP_13014689.1| hypothetical protein MQM_01203 [Staphylococcus aureus subsp. aureus
VRS7]
gi|418446152|ref|ZP_13017626.1| hypothetical protein MQO_01783 [Staphylococcus aureus subsp. aureus
VRS8]
gi|418449166|ref|ZP_13020552.1| hypothetical protein MQQ_01563 [Staphylococcus aureus subsp. aureus
VRS9]
gi|418451979|ref|ZP_13023313.1| hypothetical protein MQS_00457 [Staphylococcus aureus subsp. aureus
VRS10]
gi|418454973|ref|ZP_13026232.1| hypothetical protein MQU_01088 [Staphylococcus aureus subsp. aureus
VRS11a]
gi|418457851|ref|ZP_13029050.1| hypothetical protein MQW_01368 [Staphylococcus aureus subsp. aureus
VRS11b]
gi|418640342|ref|ZP_13202574.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-3]
gi|418878467|ref|ZP_13432702.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1165]
gi|418881233|ref|ZP_13435450.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1213]
gi|418884081|ref|ZP_13438274.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1769]
gi|418895312|ref|ZP_13449407.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1057]
gi|418991477|ref|ZP_13539138.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1096]
gi|419784633|ref|ZP_14310396.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-M]
gi|147741102|gb|ABQ49400.1| Rhomboid family protein [Staphylococcus aureus subsp. aureus JH9]
gi|149946553|gb|ABR52489.1| Rhomboid family protein [Staphylococcus aureus subsp. aureus JH1]
gi|257787597|gb|EEV25937.1| rhomboid family protein [Staphylococcus aureus A9781]
gi|257840225|gb|EEV64689.1| rhomboid family protein [Staphylococcus aureus A9763]
gi|257843832|gb|EEV68226.1| rhomboid family protein [Staphylococcus aureus A9719]
gi|257854369|gb|EEV77318.1| rhomboid family protein [Staphylococcus aureus A6300]
gi|257857986|gb|EEV80875.1| rhomboid family protein [Staphylococcus aureus A6224]
gi|257864256|gb|EEV87006.1| rhomboid family protein [Staphylococcus aureus A5937]
gi|282589989|gb|EFB95071.1| rhomboid family protein [Staphylococcus aureus A10102]
gi|285817231|gb|ADC37718.1| Putative membrane peptidase, contains TPR repeat domain
[Staphylococcus aureus 04-02981]
gi|294968419|gb|EFG44443.1| rhomboid family protein [Staphylococcus aureus A8819]
gi|297177397|gb|EFH36649.1| rhomboid family protein [Staphylococcus aureus A8796]
gi|312829937|emb|CBX34779.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ECT-R
2]
gi|315129827|gb|EFT85817.1| Rhomboid family protein [Staphylococcus aureus subsp. aureus CGS03]
gi|329727521|gb|EGG63977.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21172]
gi|375014906|gb|EHS08577.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-3]
gi|377694589|gb|EHT18954.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1165]
gi|377695118|gb|EHT19482.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1057]
gi|377714416|gb|EHT38617.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1769]
gi|377723599|gb|EHT47724.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1096]
gi|377730976|gb|EHT55034.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1213]
gi|383363843|gb|EID41169.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus IS-M]
gi|387717980|gb|EIK05975.1| hypothetical protein MQC_00501 [Staphylococcus aureus subsp. aureus
VRS2]
gi|387719477|gb|EIK07422.1| hypothetical protein MQA_00546 [Staphylococcus aureus subsp. aureus
VRS1]
gi|387724901|gb|EIK12532.1| hypothetical protein MQG_01236 [Staphylococcus aureus subsp. aureus
VRS4]
gi|387727160|gb|EIK14692.1| hypothetical protein MQI_01256 [Staphylococcus aureus subsp. aureus
VRS5]
gi|387730222|gb|EIK17629.1| hypothetical protein MQK_01111 [Staphylococcus aureus subsp. aureus
VRS6]
gi|387735290|gb|EIK22419.1| hypothetical protein MQO_01783 [Staphylococcus aureus subsp. aureus
VRS8]
gi|387736766|gb|EIK23854.1| hypothetical protein MQM_01203 [Staphylococcus aureus subsp. aureus
VRS7]
gi|387736929|gb|EIK24015.1| hypothetical protein MQQ_01563 [Staphylococcus aureus subsp. aureus
VRS9]
gi|387744860|gb|EIK31624.1| hypothetical protein MQS_00457 [Staphylococcus aureus subsp. aureus
VRS10]
gi|387745026|gb|EIK31788.1| hypothetical protein MQU_01088 [Staphylococcus aureus subsp. aureus
VRS11a]
gi|387746619|gb|EIK33348.1| hypothetical protein MQW_01368 [Staphylococcus aureus subsp. aureus
VRS11b]
Length = 487
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 79/152 (51%), Gaps = 15/152 (9%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ VT+ F H ++ H+ N+ L+IFGK+VE G++ + Y G NFVS L
Sbjct: 202 WYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVS-LSFN 260
Query: 195 KNAVSVGASGAVFGLF-AISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMS--- 250
+SVGASGA+FGL +I ++ +S + K + LGQ ++ V+ S MS
Sbjct: 261 TTTISVGASGAIFGLIGSIFAMMYVSKTFNKKM----LGQLLIALVILVG-VSLFMSNIN 315
Query: 251 -----GTFIGGYSVQSINHIAHLSGALFGVFL 277
G FIGG + I + ++ +F + L
Sbjct: 316 IVAHIGGFIGGLLITLIGYYYKVNRNIFWILL 347
>gi|417649370|ref|ZP_12299174.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21189]
gi|440735000|ref|ZP_20914611.1| rhomboid family peptidase [Staphylococcus aureus subsp. aureus DSM
20231]
gi|329728476|gb|EGG64913.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21189]
gi|436431095|gb|ELP28449.1| rhomboid family peptidase [Staphylococcus aureus subsp. aureus DSM
20231]
Length = 487
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 79/152 (51%), Gaps = 15/152 (9%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ VT+ F H ++ H+ N+ L+IFGK+VE G++ + Y G NFVS L
Sbjct: 202 WYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVS-LSFN 260
Query: 195 KNAVSVGASGAVFGLF-AISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMS--- 250
+SVGASGA+FGL +I ++ +S + K + LGQ ++ V+ S MS
Sbjct: 261 TTTISVGASGAIFGLIGSIFAMMYVSKTFNKKM----LGQLLIALVILVG-VSLFMSNIN 315
Query: 251 -----GTFIGGYSVQSINHIAHLSGALFGVFL 277
G FIGG + I + ++ +F + L
Sbjct: 316 IVAHIGGFIGGLLITLIGYYYKVNRNIFWILL 347
>gi|49483798|ref|YP_041022.1| hypothetical protein SAR1626 [Staphylococcus aureus subsp. aureus
MRSA252]
gi|282904131|ref|ZP_06312019.1| rhomboid family protein [Staphylococcus aureus subsp. aureus C160]
gi|282905958|ref|ZP_06313813.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282908868|ref|ZP_06316686.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|283958313|ref|ZP_06375764.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
A017934/97]
gi|295428127|ref|ZP_06820759.1| hypothetical protein SIAG_00655 [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|297590907|ref|ZP_06949545.1| rhomboid family protein [Staphylococcus aureus subsp. aureus MN8]
gi|415682351|ref|ZP_11447667.1| hypothetical protein CGSSa00_07270 [Staphylococcus aureus subsp.
aureus CGS00]
gi|417887902|ref|ZP_12532021.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21195]
gi|418564826|ref|ZP_13129247.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21264]
gi|418582476|ref|ZP_13146554.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1605]
gi|418597192|ref|ZP_13160725.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21342]
gi|418601009|ref|ZP_13164457.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21345]
gi|418901054|ref|ZP_13455110.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1214]
gi|418909401|ref|ZP_13463397.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG149]
gi|418923231|ref|ZP_13477147.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1233]
gi|418982555|ref|ZP_13530263.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1242]
gi|418986221|ref|ZP_13533906.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1500]
gi|49241927|emb|CAG40621.1| putative membrane protein [Staphylococcus aureus subsp. aureus
MRSA252]
gi|282327132|gb|EFB57427.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282331250|gb|EFB60764.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282595749|gb|EFC00713.1| rhomboid family protein [Staphylococcus aureus subsp. aureus C160]
gi|283790462|gb|EFC29279.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
A017934/97]
gi|295128485|gb|EFG58119.1| hypothetical protein SIAG_00655 [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|297575793|gb|EFH94509.1| rhomboid family protein [Staphylococcus aureus subsp. aureus MN8]
gi|315195451|gb|EFU25838.1| hypothetical protein CGSSa00_07270 [Staphylococcus aureus subsp.
aureus CGS00]
gi|341856931|gb|EGS97758.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21195]
gi|371975963|gb|EHO93255.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21264]
gi|374395428|gb|EHQ66695.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21342]
gi|374400256|gb|EHQ71375.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21345]
gi|377702451|gb|EHT26773.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1214]
gi|377704265|gb|EHT28575.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1500]
gi|377704836|gb|EHT29145.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1242]
gi|377710886|gb|EHT35124.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1605]
gi|377735190|gb|EHT59226.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1233]
gi|377752048|gb|EHT75972.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG149]
Length = 487
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 79/152 (51%), Gaps = 15/152 (9%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ VT+ F H ++ H+ N+ L+IFGK+VE G++ + Y G NFVS L
Sbjct: 202 WYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVS-LSFN 260
Query: 195 KNAVSVGASGAVFGLF-AISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMS--- 250
+SVGASGA+FGL +I ++ +S + K + LGQ ++ V+ S MS
Sbjct: 261 TTTISVGASGAIFGLIGSIFAMMYVSKTFNKKM----LGQLLIALVILVG-VSLFMSNIN 315
Query: 251 -----GTFIGGYSVQSINHIAHLSGALFGVFL 277
G FIGG + I + ++ +F + L
Sbjct: 316 IVAHIGGFIGGLLITLIGYYYKVNRNIFWILL 347
>gi|379014757|ref|YP_005290993.1| putative rhomboid family protein, truncated, partial
[Staphylococcus aureus subsp. aureus VC40]
gi|374363454|gb|AEZ37559.1| putative rhomboid family protein, truncated [Staphylococcus aureus
subsp. aureus VC40]
Length = 423
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 79/152 (51%), Gaps = 15/152 (9%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ VT+ F H ++ H+ N+ L+IFGK+VE G++ + Y G NFVS L
Sbjct: 202 WYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVS-LSFN 260
Query: 195 KNAVSVGASGAVFGLF-AISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMS--- 250
+SVGASGA+FGL +I ++ +S + K + LGQ ++ V+ S MS
Sbjct: 261 TTTISVGASGAIFGLIGSIFAMMYVSKTFNKKM----LGQLLIALVILVG-VSLFMSNIN 315
Query: 251 -----GTFIGGYSVQSINHIAHLSGALFGVFL 277
G FIGG + I + ++ +F + L
Sbjct: 316 IVAHIGGFIGGLLITLIGYYYKVNRNIFWILL 347
>gi|418892279|ref|ZP_13446392.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1176]
gi|377730573|gb|EHT54640.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1176]
Length = 487
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 79/152 (51%), Gaps = 15/152 (9%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ VT+ F H ++ H+ N+ L+IFGK+VE G++ + Y G NFVS L
Sbjct: 202 WYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVS-LSFN 260
Query: 195 KNAVSVGASGAVFGLF-AISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMS--- 250
+SVGASGA+FGL +I ++ +S + K + LGQ ++ V+ S MS
Sbjct: 261 TTTISVGASGAIFGLIGSIFAMMYVSKTFNKKM----LGQLLIALVILVG-VSLFMSNIN 315
Query: 251 -----GTFIGGYSVQSINHIAHLSGALFGVFL 277
G FIGG + I + ++ +F + L
Sbjct: 316 IVAHIGGFIGGLLITLIGYYYKVNRNIFWILL 347
>gi|418920630|ref|ZP_13474562.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC348]
gi|377764356|gb|EHT88209.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIGC348]
Length = 370
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 77/144 (53%), Gaps = 17/144 (11%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ VT+ F H ++ H+ N+ L+IFGK+VE G++ + Y G NFVS L
Sbjct: 85 WYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVS-LSFN 143
Query: 195 KNAVSVGASGAVFGLF-AISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTF 253
+SVGASGA+FGL +I ++ +S + K + LGQ ++ V+ S MS
Sbjct: 144 TTTISVGASGAIFGLIGSIFAMMYVSKTFNKKM----LGQLLIALVILVG-VSLFMS--- 195
Query: 254 IGGYSVQSINHIAHLSGALFGVFL 277
+IN +AH+ G + G+ +
Sbjct: 196 -------NINIVAHIGGFIGGLLI 212
>gi|387780641|ref|YP_005755439.1| hypothetical protein SARLGA251_14550 [Staphylococcus aureus subsp.
aureus LGA251]
gi|344177743|emb|CCC88222.1| putative membrane protein [Staphylococcus aureus subsp. aureus
LGA251]
Length = 487
Score = 64.3 bits (155), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 79/152 (51%), Gaps = 15/152 (9%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ VT+ F H ++ H+ N+ L+IFGK+VE G++ + Y G NFVS L
Sbjct: 202 WYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVS-LSFN 260
Query: 195 KNAVSVGASGAVFGLF-AISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMS--- 250
+SVGASGA+FGL +I ++ +S + K + LGQ ++ V+ S MS
Sbjct: 261 TTTISVGASGAIFGLIGSIFAMMYVSKTFNKKM----LGQLLIALVILVG-VSLFMSNIN 315
Query: 251 -----GTFIGGYSVQSINHIAHLSGALFGVFL 277
G FIGG + I + ++ +F + L
Sbjct: 316 IVAHIGGFIGGLLITLIGYYYKVNRNIFWILL 347
>gi|386729250|ref|YP_006195633.1| integral membrane protein (Rhomboid family) [Staphylococcus aureus
subsp. aureus 71193]
gi|387602889|ref|YP_005734410.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ST398]
gi|404478900|ref|YP_006710330.1| hypothetical protein C248_1592 [Staphylococcus aureus 08BA02176]
gi|418309989|ref|ZP_12921539.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21331]
gi|418978272|ref|ZP_13526073.1| Integral membrane protein (Rhomboid family) [Staphylococcus aureus
subsp. aureus DR10]
gi|283470827|emb|CAQ50038.1| rhomboid family protein [Staphylococcus aureus subsp. aureus ST398]
gi|365237446|gb|EHM78292.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21331]
gi|379993888|gb|EIA15333.1| Integral membrane protein (Rhomboid family) [Staphylococcus aureus
subsp. aureus DR10]
gi|384230543|gb|AFH69790.1| Integral membrane protein (Rhomboid family) [Staphylococcus aureus
subsp. aureus 71193]
gi|404440389|gb|AFR73582.1| putative membrane protein [Staphylococcus aureus 08BA02176]
Length = 487
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 79/152 (51%), Gaps = 15/152 (9%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ VT+ F H ++ H+ N+ L+IFGK+VE G++ + Y G NFVS L
Sbjct: 202 WYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVS-LSFN 260
Query: 195 KNAVSVGASGAVFGLF-AISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMS--- 250
+SVGASGA+FGL +I ++ +S + K + LGQ ++ V+ S MS
Sbjct: 261 TTTISVGASGAIFGLIGSIFAMMYVSKTFNKKM----LGQLLIALVILVG-VSLFMSNIN 315
Query: 251 -----GTFIGGYSVQSINHIAHLSGALFGVFL 277
G FIGG + I + ++ +F + L
Sbjct: 316 IVAHIGGFIGGLLITLIGYYYKVNRNVFWILL 347
>gi|88195357|ref|YP_500161.1| rhomboid family protein, partial [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|87202915|gb|ABD30725.1| rhomboid family protein [Staphylococcus aureus subsp. aureus NCTC
8325]
Length = 336
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 77/144 (53%), Gaps = 17/144 (11%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ VT+ F H ++ H+ N+ L+IFGK+VE G++ + Y G NFVS L
Sbjct: 202 WYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVS-LSFN 260
Query: 195 KNAVSVGASGAVFGLF-AISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTF 253
+SVGASGA+FGL +I ++ +S + K + LGQ ++ V+ S MS
Sbjct: 261 TTTISVGASGAIFGLIGSIFAMMYVSKTFNKKM----LGQLLIALVILVG-VSLFMS--- 312
Query: 254 IGGYSVQSINHIAHLSGALFGVFL 277
+IN +AH+ G + G+ +
Sbjct: 313 -------NINIVAHIGGFIGGLLI 329
>gi|390961805|ref|YP_006425639.1| integral membrane protein rhomboid-like protein [Thermococcus sp.
CL1]
gi|390520113|gb|AFL95845.1| integral membrane protein rhomboid-like protein [Thermococcus sp.
CL1]
Length = 203
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 72/141 (51%), Gaps = 18/141 (12%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W+Q VTA F H H+ N++FL + G+ +E G L + Y+ +G A N ++ +LP
Sbjct: 59 WWQLVTAMFVHVGILHIGFNMYFLLMMGRQLEGIIGPKRLVMVYLVSGLAGNLLTLFLLP 118
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFI 254
N+VS GASGA+FG I+ LI+ VV M+ A +A + F+
Sbjct: 119 ANSVSAGASGALFG----------------IVGTLIIITGVVGGNMQGALINAFV--LFL 160
Query: 255 GGYSVQSINHIAHLSGALFGV 275
+ S+N AHL G L G+
Sbjct: 161 INSIMPSVNVYAHLGGLLVGM 181
>gi|379795908|ref|YP_005325906.1| putative serine protease [Staphylococcus aureus subsp. aureus
MSHR1132]
gi|356872898|emb|CCE59237.1| putative serine protease [Staphylococcus aureus subsp. aureus
MSHR1132]
Length = 487
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 80/152 (52%), Gaps = 15/152 (9%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ +T+ F H ++ H+ N+ L+IFGK+VE G++ + Y G NFVS L
Sbjct: 202 WYRIITSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLGIYFIAGLFGNFVS-LSFN 260
Query: 195 KNAVSVGASGAVFGLF-AISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMS--- 250
+SVGASGA+FGL AI ++ +S + K + LGQ ++ V+ S MS
Sbjct: 261 TTTISVGASGAIFGLIGAIFAMMYVSKTFNKKM----LGQLMIALVILIG-VSLFMSNIN 315
Query: 251 -----GTFIGGYSVQSINHIAHLSGALFGVFL 277
G F+GG + I + +++ LF + L
Sbjct: 316 IVAHIGGFVGGLLITLIGYYFNVNRKLFWILL 347
>gi|422746158|ref|ZP_16800091.1| peptidase, S54 family protein [Staphylococcus aureus subsp. aureus
MRSA131]
gi|320140566|gb|EFW32420.1| peptidase, S54 family protein [Staphylococcus aureus subsp. aureus
MRSA131]
Length = 487
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 77/144 (53%), Gaps = 17/144 (11%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ VT+ F H ++ H+ N+ L+IFGK+VE G++ + Y G NFVS L
Sbjct: 202 WYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVS-LSFN 260
Query: 195 KNAVSVGASGAVFGLF-AISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTF 253
+SVGASGA+FGL +I ++ +S + K + LGQ ++ V+ S MS
Sbjct: 261 TTTISVGASGAIFGLIGSIFAMMYVSKTFNKKM----LGQLLIALVILVG-VSLFMS--- 312
Query: 254 IGGYSVQSINHIAHLSGALFGVFL 277
+IN +AH+ G + G+ +
Sbjct: 313 -------NINIVAHIGGFIGGLLI 329
>gi|414160916|ref|ZP_11417179.1| hypothetical protein HMPREF9310_01553 [Staphylococcus simulans
ACS-120-V-Sch1]
gi|410876595|gb|EKS24493.1| hypothetical protein HMPREF9310_01553 [Staphylococcus simulans
ACS-120-V-Sch1]
Length = 485
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/147 (34%), Positives = 77/147 (52%), Gaps = 7/147 (4%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
Y+ +++ F H N+ H+ N+ L+IFGKLVE G++ + Y +G N VS L L
Sbjct: 202 YRLISSMFIHFNFEHILMNMLSLFIFGKLVEAIAGHWKMLGIYFISGIFGNIVS-LALDT 260
Query: 196 NAVSVGASGAVFG----LFAISVLVKMSWDWRKILEVL-ILGQFVVEKVMEAAQASAGMS 250
N++SVGASGA+FG LFAI L K + + +L+++ +L V + A
Sbjct: 261 NSISVGASGAIFGLIGSLFAIMYLSK-QYTPKMLLQLVGVLALLTVFSLFMANVNIYAHL 319
Query: 251 GTFIGGYSVQSINHIAHLSGALFGVFL 277
G FIGG I + + LF + L
Sbjct: 320 GGFIGGLLATFIGYYFNKDRKLFWILL 346
>gi|418886814|ref|ZP_13440962.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1150]
gi|377725767|gb|EHT49880.1| rhomboid family protein [Staphylococcus aureus subsp. aureus
CIG1150]
Length = 314
Score = 63.9 bits (154), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 77/144 (53%), Gaps = 17/144 (11%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ VT+ F H ++ H+ N+ L+IFGK+VE G++ + Y G NFVS L
Sbjct: 29 WYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVS-LSFN 87
Query: 195 KNAVSVGASGAVFGLF-AISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTF 253
+SVGASGA+FGL +I ++ +S + K + LGQ ++ V+ S MS
Sbjct: 88 TTTISVGASGAIFGLIGSIFAMMYVSKTFNKKM----LGQLLIALVILVG-VSLFMS--- 139
Query: 254 IGGYSVQSINHIAHLSGALFGVFL 277
+IN +AH+ G + G+ +
Sbjct: 140 -------NINIVAHIGGFIGGLLI 156
>gi|357400681|ref|YP_004912606.1| hypothetical protein SCAT_3097 [Streptomyces cattleya NRRL 8057 =
DSM 46488]
gi|386356736|ref|YP_006054982.1| hypothetical protein SCATT_30890 [Streptomyces cattleya NRRL 8057 =
DSM 46488]
gi|337767090|emb|CCB75801.1| conserved membrane protein of unknown function [Streptomyces
cattleya NRRL 8057 = DSM 46488]
gi|365807244|gb|AEW95460.1| hypothetical protein SCATT_30890 [Streptomyces cattleya NRRL 8057 =
DSM 46488]
Length = 282
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 81/171 (47%), Gaps = 23/171 (13%)
Query: 87 KPEERRKPKKSVNG----------VFWIILLNLGLYVADHVFQVRSIKSLYLYHNFP--- 133
+PE + + +++ G +I +N+ +++A ++ L LY +P
Sbjct: 48 RPERQAQRPRTMTGGAVAANPRLITMILIGINVAVFLAVQAVGDSLVQDLILYGAWPPVD 107
Query: 134 --------AWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAA 185
WY+ +TA F H N H+ N+ L+ G +E G Y+ +
Sbjct: 108 PTSGVAEGQWYRLLTATFLHQNVMHIGFNMLSLWWIGPGLEVALGRVRFLAVYLLSALGG 167
Query: 186 NFVSWLILPKNAVSVGASGAVFGLFAIS--VLVKMSWDWRKILEVLILGQF 234
+ +S+L+ NA S+GASGAVFGL + ++ ++ +D R I+ +++L F
Sbjct: 168 SALSFLLANPNAGSLGASGAVFGLLGATFVLMRRLRYDSRPIVAIIVLNLF 218
>gi|238061764|ref|ZP_04606473.1| rhomboid family protein [Micromonospora sp. ATCC 39149]
gi|237883575|gb|EEP72403.1| rhomboid family protein [Micromonospora sp. ATCC 39149]
Length = 303
Score = 63.5 bits (153), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ VTA F H HL N++ L++ G+ +E G Y+ G N ++L
Sbjct: 139 WYRLVTAMFLHYGVVHLLLNMWALWVLGRSLEANLGPLRFLALYLIAGFGGNVAAYLFSA 198
Query: 195 KNAVSVGASGAVFGLFAISVLV--KMSWDWRKILEVLIL 231
+NA + GAS A+FGLFA +++ +M D +L VL++
Sbjct: 199 ENATTAGASTAIFGLFAALIVIERRMGRDISSVLPVLVI 237
>gi|430805416|ref|ZP_19432531.1| intramembrane serine protease [Cupriavidus sp. HMR-1]
gi|429502334|gb|ELA00646.1| intramembrane serine protease [Cupriavidus sp. HMR-1]
Length = 533
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 88/184 (47%), Gaps = 13/184 (7%)
Query: 97 SVNGVFWIILLNLG--LYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSN 154
+VN + W+I+L+ G L A + +L W++ +TA F H + HL++N
Sbjct: 180 AVNVLVWLIMLSRGAALDGAAPKMLIDWGGNLGALTQDGQWWRLLTATFLHGSLKHLAAN 239
Query: 155 LFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFAISV 214
+ LY+ GK VE G L Y+ G + +S + +VSVGASGAVFG+
Sbjct: 240 MVVLYLLGKHVERFFGTRSFLLIYVGAGLLGSALSLYFAAQTSVSVGASGAVFGIG--GA 297
Query: 215 LVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSG-TFIGGYSVQSINHIAHLSGALF 273
L+ + R+ L I + V + V+ M G + G+ +++ AH+ G +
Sbjct: 298 LLVAALLHRRELPQNIRNRLVSDAVI--------MIGYSLAQGFLSTRVDNAAHVGGLIG 349
Query: 274 GVFL 277
GV L
Sbjct: 350 GVLL 353
>gi|75907992|ref|YP_322288.1| rhomboid-like protein [Anabaena variabilis ATCC 29413]
gi|75701717|gb|ABA21393.1| Rhomboid-like protein [Anabaena variabilis ATCC 29413]
Length = 223
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 22/159 (13%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W T+ F H W HL SN+ FL++FG +EE G+F + Y+ GA A W I
Sbjct: 61 WPTLFTSQFLHGGWWHLISNMVFLWVFGNNIEERLGHFKYLIFYLACGALAALCQWFIGM 120
Query: 195 KNAV-SVGASGAVFGLFA----------ISVLVKMSWDWRKIL--EVLILGQFVVEKVME 241
+ + S+GASGA+ G+ ++ LV + + I ++I+G F V+ V+
Sbjct: 121 SSTIPSLGASGAISGVLGAYLIRFPQARVTTLVFLGFFVTTISVPALVIIGIFFVQNVIS 180
Query: 242 ---AAQASAGMSGTFIGGYSVQSINHIAHLSGALFGVFL 277
+ QA+A MS + + AH+ G +FG+ L
Sbjct: 181 GLVSLQAAANMS------VQTGGVAYWAHIGGFVFGIIL 213
>gi|212224193|ref|YP_002307429.1| integral membrane protein [Thermococcus onnurineus NA1]
gi|212009150|gb|ACJ16532.1| integral membrane protein [Thermococcus onnurineus NA1]
Length = 202
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 48/84 (57%)
Query: 134 AWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLIL 193
AW+Q TA F H H+ N++FL + G +E G L +Y+ G N V+ +L
Sbjct: 57 AWWQLFTAMFVHVGILHIVFNMYFLLMLGSQLERLFGGRVLVFTYLAAGLVGNLVTLFLL 116
Query: 194 PKNAVSVGASGAVFGLFAISVLVK 217
P N++S GASGA+FG+ + ++V
Sbjct: 117 PPNSISAGASGALFGIVGVLIMVS 140
>gi|159040476|ref|YP_001539729.1| rhomboid family protein [Salinispora arenicola CNS-205]
gi|157919311|gb|ABW00739.1| Rhomboid family protein [Salinispora arenicola CNS-205]
Length = 303
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ +TA F H HL N++ L+I G+ +E G Y+ +G N ++LI
Sbjct: 139 WYRLITAMFLHYGVIHLLLNMYALWILGRNLEASLGPARFLALYLISGLGGNVAAYLISA 198
Query: 195 KNAVSVGASGAVFGLFAISVLV--KMSWDWRKILEVLIL 231
NA + GAS A+FGLFA +V ++ D ++L +L++
Sbjct: 199 PNAATAGASTAIFGLFAALFVVGRRLGRDVSQVLPILVI 237
>gi|294813767|ref|ZP_06772410.1| Putative membrane protein [Streptomyces clavuligerus ATCC 27064]
gi|326442188|ref|ZP_08216922.1| hypothetical protein SclaA2_14039 [Streptomyces clavuligerus ATCC
27064]
gi|294326366|gb|EFG08009.1| Putative membrane protein [Streptomyces clavuligerus ATCC 27064]
Length = 301
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 56/100 (56%), Gaps = 4/100 (4%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ +TA F H +H+ NL L+ G++VE G Y+ +G + +++L+
Sbjct: 138 WYRLLTAVFLHQELSHILFNLLGLWFLGRMVEPALGRRRFLALYLLSGLGGSTLAYLVAE 197
Query: 195 KNAVSVGASGAVFGLFAISVLV--KMSWDWRKILEVLILG 232
N S+GASGA+FGL V++ ++ D R + VLILG
Sbjct: 198 PNQPSLGASGAIFGLMGAFVVLARRVQLDMRPV--VLILG 235
>gi|340502629|gb|EGR29302.1| rhomboid family protein, putative [Ichthyophthirius multifiliis]
Length = 255
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 78/146 (53%), Gaps = 10/146 (6%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
++FVTAAF HAN+ H+ N+ +IF +E G F ++ +I + N S +
Sbjct: 91 WRFVTAAFLHANFLHIFFNMISTFIFVSSLEHTYGFFTVFYIWILSAIGGNIFSADFATQ 150
Query: 196 NAVSVGASGAVFGLFAISV-LVKMSWDWRKILE-----VLILGQFVVEKVMEAAQASAGM 249
N+++VGAS A+FG+ + + + ++W+ + LE VL + +V V + ++G+
Sbjct: 151 NSIAVGASTALFGMIGLYLAYLILNWNALRFLEDLRCFVLCMAILIVSMVFLLSSGNSGI 210
Query: 250 SGTFIGGYSVQSINHIAHLSGALFGV 275
+GG Q+I++ H G + G+
Sbjct: 211 ----MGGEKEQNIDNYGHFGGFITGI 232
>gi|17231423|ref|NP_487971.1| hypothetical protein alr3931 [Nostoc sp. PCC 7120]
gi|17133065|dbj|BAB75630.1| alr3931 [Nostoc sp. PCC 7120]
Length = 223
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 22/159 (13%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W T+ F H W HL SN+ FL++FG +EE G+F + Y+ GA A W I
Sbjct: 61 WPTLFTSQFLHGGWWHLISNMVFLWVFGNNIEERLGHFKYLIFYLACGALAALCQWFIGM 120
Query: 195 KNAV-SVGASGAVFGLFA----------ISVLVKMSWDWRKIL--EVLILGQFVVEKVME 241
+ + S+GASGA+ G+ ++ L+ + + I ++I+G F V+ V+
Sbjct: 121 SSTIPSLGASGAISGVLGAYLIRFPQARVTTLIFLGFFVTTISVPALVIIGIFFVQNVIS 180
Query: 242 ---AAQASAGMSGTFIGGYSVQSINHIAHLSGALFGVFL 277
+ QA+A MS + + AH+ G +FG+ L
Sbjct: 181 GLVSLQAAANMS------VQTGGVAYWAHIGGFVFGIIL 213
>gi|294630362|ref|ZP_06708922.1| membrane protein [Streptomyces sp. e14]
gi|292833695|gb|EFF92044.1| membrane protein [Streptomyces sp. e14]
Length = 282
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 60/99 (60%), Gaps = 2/99 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ +TA F HAN+ H+ N+ L+ G +E G Y +G A + +++L+
Sbjct: 119 WYRLITAMFLHANYFHILFNMLSLWWIGGPLEAALGRARYLALYFVSGLAGSALTYLLAA 178
Query: 195 KNAVSVGASGAVFGLF-AISVLV-KMSWDWRKILEVLIL 231
N S+GASGA+FGLF A +VL+ ++ +D R ++ +L++
Sbjct: 179 PNQPSLGASGAIFGLFGATAVLMRRLRYDMRPVIALLVI 217
>gi|302832039|ref|XP_002947584.1| hypothetical protein VOLCADRAFT_103525 [Volvox carteri f.
nagariensis]
gi|300266932|gb|EFJ51117.1| hypothetical protein VOLCADRAFT_103525 [Volvox carteri f.
nagariensis]
Length = 329
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 73/150 (48%), Gaps = 6/150 (4%)
Query: 99 NGVFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFL 158
+G+ +I LN ++ ++ + L LY+ AW+Q+ T+AF HAN LS N+F L
Sbjct: 91 SGMAALIALNGVIFAGAAFAKLPPLAGLALYNAGGAWWQYGTSAFVHANLTQLSRNMFLL 150
Query: 159 YIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNA------VSVGASGAVFGLFAI 212
+++G + G G+W +Y+ +N V+ L A + V ASG G+
Sbjct: 151 WLWGSALRRVVGGPGVWFTYVICALGSNMVAAYTLGAKAKAGTALLGVAASGGCAGVALA 210
Query: 213 SVLVKMSWDWRKILEVLILGQFVVEKVMEA 242
++ + R ++ V + QF + ++ A
Sbjct: 211 ALALTARPSLRWLMAVGLAVQFTLPALLAA 240
>gi|52144990|ref|YP_081838.1| rhomboid-like protein [Bacillus cereus E33L]
gi|51978459|gb|AAU20009.1| conserved hypothetical protein; probable rhomboid-like protein
[Bacillus cereus E33L]
Length = 190
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 66/138 (47%), Gaps = 11/138 (7%)
Query: 129 YHNFPA---WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAA 185
YH + A W++ +T+ F H + H SN L++ G +E++ G+F + + +G
Sbjct: 38 YHEYIANGEWWRLITSLFVHVDLQHFLSNSICLFVLGSSIEKQLGHFSFIIIFFLSGILG 97
Query: 186 NFVSWLILPKNAVSVGASGAVFGLFAISVLVKMSWDWRK-------ILEVLILGQFVVEK 238
N S+LI+P + GASG +FGL + + S +R I V+I +
Sbjct: 98 NIFSYLIMPHEYIHSGASGGIFGLLGAQLFLMYS-RYRSSNPKDIAIFSVMICILLLFTF 156
Query: 239 VMEAAQASAGMSGTFIGG 256
+A + ++G IGG
Sbjct: 157 FNPSANPISHLTGLIIGG 174
>gi|152999493|ref|YP_001365174.1| rhomboid family protein [Shewanella baltica OS185]
gi|151364111|gb|ABS07111.1| Rhomboid family protein [Shewanella baltica OS185]
Length = 547
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 52/91 (57%), Gaps = 5/91 (5%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T+ F H HL+ NL+ L+ G +E G + L+L+Y+ TG A+ S +
Sbjct: 375 WWRLITSTFIHGGLAHLALNLYGLFFVGSFLEPVLGKWRLFLAYLITGVLASIAS-ICWY 433
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWRKI 225
VSVGASGA+ GL I V+ W W+KI
Sbjct: 434 DATVSVGASGAIMGLLGILVI----WAWKKI 460
>gi|126175582|ref|YP_001051731.1| rhomboid family protein [Shewanella baltica OS155]
gi|386342329|ref|YP_006038695.1| rhomboid family protein [Shewanella baltica OS117]
gi|125998787|gb|ABN62862.1| Rhomboid family protein [Shewanella baltica OS155]
gi|334864730|gb|AEH15201.1| Rhomboid family protein [Shewanella baltica OS117]
Length = 541
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 52/91 (57%), Gaps = 5/91 (5%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T+ F H HL+ NL+ L+ G +E G + L+L+Y+ TG A+ S +
Sbjct: 375 WWRLITSTFIHGGLAHLALNLYGLFFVGSFLEPVLGKWRLFLAYLITGVLASIAS-ICWY 433
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWRKI 225
VSVGASGA+ GL I V+ W W+KI
Sbjct: 434 DATVSVGASGAIMGLLGILVI----WAWKKI 460
>gi|83951094|ref|ZP_00959827.1| rhomboid family protein [Roseovarius nubinhibens ISM]
gi|83838993|gb|EAP78289.1| rhomboid family protein [Roseovarius nubinhibens ISM]
Length = 257
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
++ F+T+ F H W HL N+ FL+IFG +E+E G+FG L Y+ +G A V + P
Sbjct: 61 YHGFLTSMFMHGGWMHLLGNMLFLWIFGDNMEDEMGHFGFALFYLVSGLGAGLVHYASGP 120
Query: 195 KNAV-SVGASGAVFGLFAISVLV 216
+ V +VGASGA+ G+ +L+
Sbjct: 121 GSLVPTVGASGAIAGVMGGYLLL 143
>gi|49476749|ref|YP_034576.1| rhomboid-like protein [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|118475997|ref|YP_893148.1| rhomboid family protein [Bacillus thuringiensis str. Al Hakam]
gi|196036042|ref|ZP_03103443.1| rhomboid family protein [Bacillus cereus W]
gi|196041125|ref|ZP_03108421.1| rhomboid family protein [Bacillus cereus NVH0597-99]
gi|196046176|ref|ZP_03113403.1| rhomboid family protein [Bacillus cereus 03BB108]
gi|218901442|ref|YP_002449276.1| rhomboid family protein [Bacillus cereus AH820]
gi|225862291|ref|YP_002747669.1| rhomboid family protein [Bacillus cereus 03BB102]
gi|376264269|ref|YP_005116981.1| rhomboid family protein [Bacillus cereus F837/76]
gi|49328305|gb|AAT58951.1| conserved hypothetical protein, probable rhomboid-like protein
[Bacillus thuringiensis serovar konkukian str. 97-27]
gi|118415222|gb|ABK83641.1| rhomboid family protein [Bacillus thuringiensis str. Al Hakam]
gi|195991411|gb|EDX55378.1| rhomboid family protein [Bacillus cereus W]
gi|196022921|gb|EDX61601.1| rhomboid family protein [Bacillus cereus 03BB108]
gi|196028060|gb|EDX66671.1| rhomboid family protein [Bacillus cereus NVH0597-99]
gi|218538397|gb|ACK90795.1| rhomboid family protein [Bacillus cereus AH820]
gi|225790775|gb|ACO30992.1| rhomboid family protein [Bacillus cereus 03BB102]
gi|364510069|gb|AEW53468.1| Rhomboid family protein [Bacillus cereus F837/76]
Length = 190
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 129 YHNFPA---WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAA 185
YH + A W++ +T+ F H + H SN L++ G +E++ G F + + +G
Sbjct: 38 YHEYIANGEWWRLITSLFVHVDLQHFLSNSICLFVLGSSIEKQLGRFSFIIIFFLSGILG 97
Query: 186 NFVSWLILPKNAVSVGASGAVFGLFA 211
N S+LI+P + GASG +FGL
Sbjct: 98 NIFSYLIMPHEYIHAGASGGIFGLLG 123
>gi|423553832|ref|ZP_17530159.1| hypothetical protein IGW_04463 [Bacillus cereus ISP3191]
gi|401182652|gb|EJQ89784.1| hypothetical protein IGW_04463 [Bacillus cereus ISP3191]
Length = 190
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 129 YHNFPA---WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAA 185
YH + A W++ +T+ F H + H SN L++ G +E++ G F + + +G
Sbjct: 38 YHEYIANGEWWRLITSLFVHVDLQHFLSNSICLFVLGSSIEKQLGRFSFIIIFFLSGILG 97
Query: 186 NFVSWLILPKNAVSVGASGAVFGLFA 211
N S+LI+P + GASG +FGL
Sbjct: 98 NIFSYLIMPHEYIHAGASGGIFGLLG 123
>gi|56697844|ref|YP_168215.1| rhomboid family protein [Ruegeria pomeroyi DSS-3]
gi|56679581|gb|AAV96247.1| rhomboid family protein [Ruegeria pomeroyi DSS-3]
Length = 247
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 73/151 (48%), Gaps = 11/151 (7%)
Query: 134 AWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLIL 193
W VT+ F H W HL N+ FL+IFG +E+E G+ G L Y+ G A + L
Sbjct: 60 GWQTLVTSIFLHGGWMHLGGNMLFLWIFGDNLEDEMGHLGFALFYLAAGIGAGLIHVLSG 119
Query: 194 PKNAV-SVGASGAVFGLFAISVLVKMSWDWRKILEVLIL--GQFVVEKVMEAAQASAGMS 250
P + V ++GASGA+ G+ +L+ R +++L++ F + + A +
Sbjct: 120 PGSMVPTIGASGAIAGVMGGYLLLFP----RARVDILLILFVYFRIFTIPAFVMLGAWLG 175
Query: 251 GTFIGGYS----VQSINHIAHLSGALFGVFL 277
F+GG+S + + AH G G+ L
Sbjct: 176 FQFLGGFSSDPDTGGVAYWAHTGGFAVGLVL 206
>gi|160874113|ref|YP_001553429.1| rhomboid family protein [Shewanella baltica OS195]
gi|378707356|ref|YP_005272250.1| rhomboid family protein [Shewanella baltica OS678]
gi|418024255|ref|ZP_12663238.1| Peptidase S54, rhomboid domain protein [Shewanella baltica OS625]
gi|160859635|gb|ABX48169.1| Rhomboid family protein [Shewanella baltica OS195]
gi|315266345|gb|ADT93198.1| Rhomboid family protein [Shewanella baltica OS678]
gi|353536215|gb|EHC05774.1| Peptidase S54, rhomboid domain protein [Shewanella baltica OS625]
Length = 541
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 52/91 (57%), Gaps = 5/91 (5%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T+ F H HL+ NL+ L+ G +E G + L+L+Y+ TG A+ S +
Sbjct: 375 WWRLITSTFIHGGLAHLALNLYGLFFVGSFLEPVLGKWRLFLAYLITGILASIAS-ICWY 433
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWRKI 225
VSVGASGA+ GL I V+ W W+KI
Sbjct: 434 DATVSVGASGAIMGLLGILVI----WAWKKI 460
>gi|30260425|ref|NP_842802.1| rhomboid family protein [Bacillus anthracis str. Ames]
gi|47525506|ref|YP_016855.1| rhomboid family protein [Bacillus anthracis str. 'Ames Ancestor']
gi|49183268|ref|YP_026520.1| rhomboid family protein [Bacillus anthracis str. Sterne]
gi|165871540|ref|ZP_02216186.1| rhomboid family protein [Bacillus anthracis str. A0488]
gi|167640337|ref|ZP_02398602.1| rhomboid family protein [Bacillus anthracis str. A0193]
gi|170707901|ref|ZP_02898351.1| rhomboid family protein [Bacillus anthracis str. A0389]
gi|177653388|ref|ZP_02935598.1| rhomboid family protein [Bacillus anthracis str. A0174]
gi|190567414|ref|ZP_03020328.1| rhomboid family protein [Bacillus anthracis str. Tsiankovskii-I]
gi|227812917|ref|YP_002812926.1| rhomboid family protein [Bacillus anthracis str. CDC 684]
gi|229604752|ref|YP_002864876.1| rhomboid family protein [Bacillus anthracis str. A0248]
gi|254734931|ref|ZP_05192643.1| rhomboid family protein [Bacillus anthracis str. Western North
America USA6153]
gi|254754913|ref|ZP_05206948.1| rhomboid family protein [Bacillus anthracis str. Vollum]
gi|254756956|ref|ZP_05208984.1| rhomboid family protein [Bacillus anthracis str. Australia 94]
gi|421511441|ref|ZP_15958311.1| rhomboid family protein [Bacillus anthracis str. UR-1]
gi|30253746|gb|AAP24288.1| rhomboid family protein [Bacillus anthracis str. Ames]
gi|47500654|gb|AAT29330.1| rhomboid family protein [Bacillus anthracis str. 'Ames Ancestor']
gi|49177195|gb|AAT52571.1| rhomboid family protein [Bacillus anthracis str. Sterne]
gi|164712644|gb|EDR18175.1| rhomboid family protein [Bacillus anthracis str. A0488]
gi|167511739|gb|EDR87120.1| rhomboid family protein [Bacillus anthracis str. A0193]
gi|170127259|gb|EDS96136.1| rhomboid family protein [Bacillus anthracis str. A0389]
gi|172081428|gb|EDT66501.1| rhomboid family protein [Bacillus anthracis str. A0174]
gi|190561541|gb|EDV15512.1| rhomboid family protein [Bacillus anthracis str. Tsiankovskii-I]
gi|227004612|gb|ACP14355.1| rhomboid family protein [Bacillus anthracis str. CDC 684]
gi|229269160|gb|ACQ50797.1| rhomboid family protein [Bacillus anthracis str. A0248]
gi|401818519|gb|EJT17719.1| rhomboid family protein [Bacillus anthracis str. UR-1]
Length = 190
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 129 YHNFPA---WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAA 185
YH + A W++ +T+ F H + H SN L++ G +E++ G F + + +G
Sbjct: 38 YHEYIANGEWWRLITSLFVHVDLQHFLSNSICLFVLGSSIEKQLGRFSFIIIFFLSGILG 97
Query: 186 NFVSWLILPKNAVSVGASGAVFGLFA 211
N S+LI+P + GASG +FGL
Sbjct: 98 NIFSYLIMPHEYIHAGASGGIFGLLG 123
>gi|408376496|ref|ZP_11174101.1| rhomboid family protein [Agrobacterium albertimagni AOL15]
gi|407749963|gb|EKF61474.1| rhomboid family protein [Agrobacterium albertimagni AOL15]
Length = 285
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 133 PAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLI 192
P +VT +F H +W HL SN+ FL++FG VE+ G+F Y+ AA FV L+
Sbjct: 70 PEGATYVTYSFLHGSWLHLGSNMLFLWVFGDNVEDAMGHFKFLFFYLACAAAGAFVHALV 129
Query: 193 LPKN-AVSVGASGAVFGLFA 211
+P + A +GASGAV G+ A
Sbjct: 130 VPASQAPLIGASGAVSGVVA 149
>gi|329938622|ref|ZP_08288018.1| integral membrane protein [Streptomyces griseoaurantiacus M045]
gi|329302113|gb|EGG46005.1| integral membrane protein [Streptomyces griseoaurantiacus M045]
Length = 303
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 61/99 (61%), Gaps = 2/99 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+Y+ +TA F H + H+ N+ L+ G +E+ G Y+ +G A + +S+L+
Sbjct: 140 YYRLLTAMFLHGGYAHIIFNMLSLWWLGAPLEKALGRARFLALYLVSGLAGSALSYLLAA 199
Query: 195 KNAVSVGASGAVFGLF-AISVLV-KMSWDWRKILEVLIL 231
N S+GASGA+FGLF A +VLV ++++D R ++ +L++
Sbjct: 200 ANQPSLGASGAIFGLFGATAVLVRRLNYDMRPVIALLVI 238
>gi|167634174|ref|ZP_02392496.1| rhomboid family protein [Bacillus anthracis str. A0442]
gi|170687776|ref|ZP_02878991.1| rhomboid family protein [Bacillus anthracis str. A0465]
gi|254686591|ref|ZP_05150450.1| rhomboid family protein [Bacillus anthracis str. CNEVA-9066]
gi|254723569|ref|ZP_05185356.1| rhomboid family protein [Bacillus anthracis str. A1055]
gi|254739716|ref|ZP_05197409.1| rhomboid family protein [Bacillus anthracis str. Kruger B]
gi|421641042|ref|ZP_16081606.1| rhomboid family protein [Bacillus anthracis str. BF1]
gi|167530488|gb|EDR93203.1| rhomboid family protein [Bacillus anthracis str. A0442]
gi|170668303|gb|EDT19051.1| rhomboid family protein [Bacillus anthracis str. A0465]
gi|403391827|gb|EJY89099.1| rhomboid family protein [Bacillus anthracis str. BF1]
Length = 190
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 129 YHNFPA---WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAA 185
YH + A W++ +T+ F H + H SN L++ G +E++ G F + + +G
Sbjct: 38 YHEYIANGEWWRLITSLFVHVDLQHFLSNSICLFVLGSSIEKQLGRFSFIIIFFLSGILG 97
Query: 186 NFVSWLILPKNAVSVGASGAVFGLFA 211
N S+LI+P + GASG +FGL
Sbjct: 98 NIFSYLIMPHEYIHAGASGGIFGLLG 123
>gi|386734109|ref|YP_006207290.1| rhomboid family protein [Bacillus anthracis str. H9401]
gi|384383961|gb|AFH81622.1| Rhomboid family protein [Bacillus anthracis str. H9401]
Length = 190
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 129 YHNFPA---WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAA 185
YH + A W++ +T+ F H + H SN L++ G +E++ G F + + +G
Sbjct: 38 YHEYIANGEWWRLITSLFVHVDLQHFLSNSICLFVLGSSIEKQLGRFSFIIIFFLSGILG 97
Query: 186 NFVSWLILPKNAVSVGASGAVFGLFA 211
N S+LI+P + GASG +FGL
Sbjct: 98 NIFSYLIMPHEYIHAGASGGIFGLLG 123
>gi|119513449|ref|ZP_01632477.1| Rhomboid-like protein [Nodularia spumigena CCY9414]
gi|119461900|gb|EAW42909.1| Rhomboid-like protein [Nodularia spumigena CCY9414]
Length = 223
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 62/123 (50%), Gaps = 5/123 (4%)
Query: 115 DHVFQVRSIKSLYLYHNFP-AWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFG 173
+ F + ++ L NF W T+ F H W HL SN+ FL++FG +E+ G+F
Sbjct: 40 EQFFGIYAVIPRELTTNFALEWTTLFTSQFLHGGWWHLISNMVFLWVFGNNIEDRMGHFK 99
Query: 174 LWLSYIFTGAAANFVSWLILPKNAV-SVGASGAVFGLFAISVLVKMSWDWRKILEVLILG 232
+ Y+ GA A W I + + S+GASGA+ G+ V+ + KI +L LG
Sbjct: 100 YLIFYLACGALAGLCQWFISMDSTIPSLGASGAIAGILGAYVI---RFPQSKIFTLLFLG 156
Query: 233 QFV 235
FV
Sbjct: 157 FFV 159
>gi|154483847|ref|ZP_02026295.1| hypothetical protein EUBVEN_01551 [Eubacterium ventriosum ATCC
27560]
gi|149735338|gb|EDM51224.1| peptidase, S54 family [Eubacterium ventriosum ATCC 27560]
Length = 201
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 100/202 (49%), Gaps = 24/202 (11%)
Query: 85 LDKPEERRKPKKS-----VNGVFWIILLNLG-LYVADHVFQVRSIKSLYLYHNFPAWYQF 138
+++PE+R+ P + +N V ++++ G ++++ + + ++ N WY+
Sbjct: 1 MNEPEQRKIPYVTAVLVAINVVVFLVMEFFGSTESGEYMYAHGASYAPDIFEN-GQWYRI 59
Query: 139 VTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVS---WLILPK 195
+T+ F H HL +N+ LYI G +EE G ++Y G A +S +I +
Sbjct: 60 LTSMFMHFGAEHLINNMVMLYILGYQIEENFGRVKYLITYFICGIAGGIISSGIEMITGE 119
Query: 196 NAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIG 255
++S GASGA+FG+F VL+ M + RK L + + ++ ++ +
Sbjct: 120 YSISAGASGAIFGIFG--VLLVMIFKSRKQLGQVSAPRLILLFIL------------MVF 165
Query: 256 GYSVQSINHIAHLSGALFGVFL 277
G + ++ +AHL GA+ GV +
Sbjct: 166 GNMQEGVDWMAHLGGAVTGVVI 187
>gi|256389276|ref|YP_003110840.1| rhomboid family protein [Catenulispora acidiphila DSM 44928]
gi|256355502|gb|ACU68999.1| Rhomboid family protein [Catenulispora acidiphila DSM 44928]
Length = 356
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 4/94 (4%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVS-WLIL 193
WY+ VT+ F HAN H++SN+ L+ G ++E G L Y+ G A S W +
Sbjct: 143 WYRLVTSMFLHANLIHIASNMISLFFIGPMLEAMLGRLRFVLVYLIGGLAGAVTSYWFMT 202
Query: 194 PKNAVSVGASGAVFGLFAISVLVKMSWDWRKILE 227
P + S+GASGA+ +F V++ + RKIL+
Sbjct: 203 PLSPASLGASGAISAVFGCLVVIGLR---RKILD 233
>gi|299538296|ref|ZP_07051581.1| hypothetical protein BFZC1_19855 [Lysinibacillus fusiformis ZC1]
gi|424736343|ref|ZP_18164803.1| hypothetical protein C518_0957 [Lysinibacillus fusiformis ZB2]
gi|298726498|gb|EFI67088.1| hypothetical protein BFZC1_19855 [Lysinibacillus fusiformis ZC1]
gi|422949946|gb|EKU44319.1| hypothetical protein C518_0957 [Lysinibacillus fusiformis ZB2]
Length = 207
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 92/205 (44%), Gaps = 26/205 (12%)
Query: 79 MISQLELDKPEERRKPKKSVNGVFWIILLNLGLYVADHVFQVRSIKSLY-LYHNF----P 133
M S+ E K + P S +I +NL LYV + + ++ Y + NF
Sbjct: 1 MFSRTENFKQYTKYYPVVST-----LIAINLTLYVLSLIPSIGTLLWNYGIQANFLIQSG 55
Query: 134 AWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLIL 193
W++ +A F HA + H+ N+F LY+FG +E+ G Y+ +G N +++
Sbjct: 56 EWWRVFSAIFLHAGFMHVFFNMFSLYLFGPELEKIAGKARFITIYLVSGIVGNMATYIFY 115
Query: 194 PKNAVSVGASGAVFGLF-AISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGT 252
+ S+GASGA+FG+F A LV + +L LIL V+ +M Q
Sbjct: 116 DSSYASLGASGAIFGIFGAFGALVYYTRRTMPMLRKLILPIIVISVIMTFLQP------- 168
Query: 253 FIGGYSVQSINHIAHLSGALFGVFL 277
++N AHL G + G L
Sbjct: 169 --------NVNVFAHLGGLVTGFIL 185
>gi|386312683|ref|YP_006008848.1| rhomboid family protein [Shewanella putrefaciens 200]
gi|319425308|gb|ADV53382.1| Rhomboid family protein [Shewanella putrefaciens 200]
Length = 523
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 71/136 (52%), Gaps = 13/136 (9%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ VT++F H HL NL+ L+ G +E G + L L Y+ +G A+ S L
Sbjct: 372 WWRLVTSSFIHGGLAHLVLNLYGLFFVGTFIEPLLGKWRLLLVYLVSGILASVAS-LCWY 430
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFI 254
+SVGASGA+ GLF I V+ W W+++ I F++ + A +A + F+
Sbjct: 431 DATISVGASGAIMGLFGILVI----WVWKRVFAKEI--HFILS-INVAIFVTASVVSGFL 483
Query: 255 GGYSVQSINHIAHLSG 270
GG +++ AH+ G
Sbjct: 484 GG-----VDNAAHIGG 494
>gi|373950714|ref|ZP_09610675.1| Rhomboid family protein [Shewanella baltica OS183]
gi|386323452|ref|YP_006019569.1| rhomboid family protein [Shewanella baltica BA175]
gi|333817597|gb|AEG10263.1| Rhomboid family protein [Shewanella baltica BA175]
gi|373887314|gb|EHQ16206.1| Rhomboid family protein [Shewanella baltica OS183]
Length = 538
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 52/91 (57%), Gaps = 5/91 (5%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T+ F H HL+ NL+ L+ G +E G + L+L+Y+ TG A+ S +
Sbjct: 375 WWRLITSTFIHGGLAHLALNLYGLFFVGSFLEPVLGKWRLFLAYLITGILASIAS-ICWY 433
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWRKI 225
VSVGASGA+ GL I V+ W W+KI
Sbjct: 434 DATVSVGASGAIMGLLGILVI----WAWKKI 460
>gi|425737376|ref|ZP_18855649.1| hypothetical protein C273_03260 [Staphylococcus massiliensis S46]
gi|425482724|gb|EKU49880.1| hypothetical protein C273_03260 [Staphylococcus massiliensis S46]
Length = 484
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 75/146 (51%), Gaps = 21/146 (14%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T+ F H N+ H+ N+ L+IFGKL+E G++ ++ Y+ +G N V+ P
Sbjct: 202 WHRLITSMFLHLNFEHILFNMLSLFIFGKLLESILGSWRMFGVYMLSGIIGNLVTLAFSP 261
Query: 195 KNAVSVGASGAVFGLFA---ISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSG 251
+ S+GASGA+FGL +++ +D R I ++L+ +V
Sbjct: 262 -DTFSLGASGAIFGLIGSLIACMIISQKFDQRTIGQLLLALLIMV--------------- 305
Query: 252 TFIGGYSVQSINHIAHLSGALFGVFL 277
+ + +IN +AH+ G L GV +
Sbjct: 306 --VISLFISNINVLAHIGGLLGGVLV 329
>gi|120600057|ref|YP_964631.1| rhomboid family protein [Shewanella sp. W3-18-1]
gi|120560150|gb|ABM26077.1| Rhomboid family protein [Shewanella sp. W3-18-1]
Length = 523
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 71/136 (52%), Gaps = 13/136 (9%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ VT++F H HL NL+ L+ G +E G + L L Y+ +G A+ S L
Sbjct: 372 WWRLVTSSFIHGGLAHLVLNLYGLFFVGTFIEPLLGKWRLLLVYLVSGILASVAS-LCWY 430
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFI 254
+SVGASGA+ GLF I V+ W W+++ I F++ + A +A + F+
Sbjct: 431 DATISVGASGAIMGLFGILVI----WVWKRVFAKEI--HFILS-INVAIFVTASVVSGFL 483
Query: 255 GGYSVQSINHIAHLSG 270
GG +++ AH+ G
Sbjct: 484 GG-----VDNAAHIGG 494
>gi|308172329|ref|YP_003919034.1| hypothetical protein BAMF_0438 [Bacillus amyloliquefaciens DSM 7]
gi|384158053|ref|YP_005540126.1| hypothetical protein BAMTA208_02230 [Bacillus amyloliquefaciens
TA208]
gi|384162858|ref|YP_005544237.1| hypothetical protein LL3_00461 [Bacillus amyloliquefaciens LL3]
gi|384167079|ref|YP_005548457.1| hypothetical protein BAXH7_00463 [Bacillus amyloliquefaciens XH7]
gi|307605193|emb|CBI41564.1| conserved hypothetical protein [Bacillus amyloliquefaciens DSM 7]
gi|328552141|gb|AEB22633.1| hypothetical protein BAMTA208_02230 [Bacillus amyloliquefaciens
TA208]
gi|328910413|gb|AEB62009.1| hypothetical protein LL3_00461 [Bacillus amyloliquefaciens LL3]
gi|341826358|gb|AEK87609.1| hypothetical protein BAXH7_00463 [Bacillus amyloliquefaciens XH7]
Length = 199
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 49/84 (58%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ VT F HAN+ HL N L++F +E+ G + YI +G N ++L+ P
Sbjct: 58 WWRLVTPMFLHANFTHLLFNSMSLFLFAPPLEQMLGKVRFLIVYIASGIIGNIGTYLVEP 117
Query: 195 KNAVSVGASGAVFGLFAISVLVKM 218
+ V VGASGA+FGLF + V + +
Sbjct: 118 LDYVHVGASGAIFGLFGVYVFLTV 141
>gi|417800856|ref|ZP_12447962.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21318]
gi|334277580|gb|EGL95806.1| peptidase, S54 family [Staphylococcus aureus subsp. aureus 21318]
Length = 289
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ VT+ F H ++ H+ N+ L+IFGK+VE G++ + Y G NFVS L
Sbjct: 202 WYRIVTSMFLHFSFEHILMNMLSLFIFGKIVEAIIGSWRMLTVYFIAGLFGNFVS-LSFN 260
Query: 195 KNAVSVGASGAVFGL 209
+SVGASGA+FGL
Sbjct: 261 TTTISVGASGAIFGL 275
>gi|374710297|ref|ZP_09714731.1| hypothetical protein SinuC_08740 [Sporolactobacillus inulinus CASD]
Length = 204
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 48/84 (57%)
Query: 131 NFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSW 190
N AW+Q VT F H ++H+ N F LYIFG +E+ G F ++++ TG AN +
Sbjct: 61 NGGAWWQLVTPIFLHITFSHILFNAFSLYIFGPALEQLIGRFRYLIAFLSTGVIANIAAL 120
Query: 191 LILPKNAVSVGASGAVFGLFAISV 214
+ P V GASGA+FGL I +
Sbjct: 121 FLEPIGFVHYGASGALFGLLGIYI 144
>gi|419758894|ref|ZP_14285206.1| membrane-associated serine protease [Oenococcus oeni AWRIB304]
gi|419857800|ref|ZP_14380503.1| membrane-associated serine protease [Oenococcus oeni AWRIB202]
gi|421185357|ref|ZP_15642768.1| membrane-associated serine protease [Oenococcus oeni AWRIB318]
gi|421188834|ref|ZP_15646166.1| membrane-associated serine protease [Oenococcus oeni AWRIB419]
gi|421189623|ref|ZP_15646937.1| membrane-associated serine protease [Oenococcus oeni AWRIB422]
gi|421190919|ref|ZP_15648203.1| membrane-associated serine protease [Oenococcus oeni AWRIB548]
gi|421193560|ref|ZP_15650806.1| membrane-associated serine protease [Oenococcus oeni AWRIB553]
gi|421195397|ref|ZP_15652605.1| membrane-associated serine protease [Oenococcus oeni AWRIB568]
gi|421197510|ref|ZP_15654685.1| membrane-associated serine protease [Oenococcus oeni AWRIB576]
gi|399904349|gb|EJN91805.1| membrane-associated serine protease [Oenococcus oeni AWRIB304]
gi|399964167|gb|EJN98821.1| membrane-associated serine protease [Oenococcus oeni AWRIB419]
gi|399964538|gb|EJN99179.1| membrane-associated serine protease [Oenococcus oeni AWRIB318]
gi|399971719|gb|EJO05958.1| membrane-associated serine protease [Oenococcus oeni AWRIB553]
gi|399972713|gb|EJO06912.1| membrane-associated serine protease [Oenococcus oeni AWRIB422]
gi|399973615|gb|EJO07780.1| membrane-associated serine protease [Oenococcus oeni AWRIB548]
gi|399975119|gb|EJO09187.1| membrane-associated serine protease [Oenococcus oeni AWRIB576]
gi|399975822|gb|EJO09857.1| membrane-associated serine protease [Oenococcus oeni AWRIB568]
gi|410497271|gb|EKP88746.1| membrane-associated serine protease [Oenococcus oeni AWRIB202]
Length = 241
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 52/91 (57%), Gaps = 3/91 (3%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ T F H++ H+ SN+F L IFG VE+ G L Y+ +G N ++ + P
Sbjct: 72 WYRLFTPIFLHSSLMHIFSNMFTLIIFGPFVEKLFGKTKYLLIYLLSGLWGNLLTLIFDP 131
Query: 195 K-NAVSVGASGAVFGLFAISVLVKMSWDWRK 224
N VSVGASGA+FGLF ++ ++W R
Sbjct: 132 NPNIVSVGASGALFGLFG--AMISIAWFNRN 160
>gi|443287776|ref|ZP_21026871.1| Rhomboid family protein [Micromonospora lupini str. Lupac 08]
gi|385882192|emb|CCH21804.1| Rhomboid family protein [Micromonospora lupini str. Lupac 08]
Length = 303
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ VTA F H HL N++ L++ G+ +E G Y+ G N ++L
Sbjct: 139 WYRLVTAMFLHYGVIHLLLNMWALWVLGRSLEANLGPLRFGALYLIAGLGGNVAAYLFSA 198
Query: 195 KNAVSVGASGAVFGLFAISVLV--KMSWDWRKILEVLIL 231
+N+ + GAS AVFGLFA +++ K+ D +++ +L++
Sbjct: 199 QNSATAGASTAVFGLFAALIIIERKLGRDISQVIPILVI 237
>gi|116490957|ref|YP_810501.1| membrane-associated serine protease [Oenococcus oeni PSU-1]
gi|290890431|ref|ZP_06553506.1| hypothetical protein AWRIB429_0896 [Oenococcus oeni AWRIB429]
gi|419859592|ref|ZP_14382246.1| membrane-associated serine protease [Oenococcus oeni DSM 20252 =
AWRIB129]
gi|116091682|gb|ABJ56836.1| Membrane-associated serine protease [Oenococcus oeni PSU-1]
gi|290479827|gb|EFD88476.1| hypothetical protein AWRIB429_0896 [Oenococcus oeni AWRIB429]
gi|410496609|gb|EKP88092.1| membrane-associated serine protease [Oenococcus oeni DSM 20252 =
AWRIB129]
Length = 236
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 52/91 (57%), Gaps = 3/91 (3%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ T F H++ H+ SN+F L IFG VE+ G L Y+ +G N ++ + P
Sbjct: 67 WYRLFTPIFLHSSLMHIFSNMFTLIIFGPFVEKLFGKTKYLLIYLLSGLWGNLLTLIFDP 126
Query: 195 K-NAVSVGASGAVFGLFAISVLVKMSWDWRK 224
N VSVGASGA+FGLF ++ ++W R
Sbjct: 127 NPNIVSVGASGALFGLFG--AMISIAWFNRN 155
>gi|23098073|ref|NP_691539.1| hypothetical protein OB0618 [Oceanobacillus iheyensis HTE831]
gi|22776298|dbj|BAC12574.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length = 258
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 88/179 (49%), Gaps = 20/179 (11%)
Query: 104 IILLNLGLYVADHVFQVRSIKSLYLYH-NFPA------WYQFVTAAFCHANWNHLSSNLF 156
++++N+ L+ + + Q++ + + +Y F A W++ +T F H H+ N F
Sbjct: 22 LVIINITLWAINDLLQLQIGRFIEVYGIGFNAAIEAGQWWRLITPIFLHGGLMHMLFNSF 81
Query: 157 FLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFAISVLV 216
L +FG +E+ G F L+Y+ T AN + + P + +GASGA+FGLF I V +
Sbjct: 82 SLVLFGPALEQMLGRFKFILAYLGTAITANIAIFFLQPMSYAHLGASGAIFGLFGIYVFM 141
Query: 217 KMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQSINHIAHLSGALFGV 275
M +RK L + Q M A G+ TFI +I+ + HL G L G+
Sbjct: 142 VM---YRKDL----IDQ--SSSQMIAVIVGIGLVMTFIR----PNISILGHLFGFLSGI 187
>gi|146292013|ref|YP_001182437.1| rhomboid family protein [Shewanella putrefaciens CN-32]
gi|145563703|gb|ABP74638.1| Rhomboid family protein [Shewanella putrefaciens CN-32]
Length = 523
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 71/136 (52%), Gaps = 13/136 (9%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ VT++F H HL NL+ L+ G +E G + L L Y+ +G A+ S L
Sbjct: 372 WWRLVTSSFIHGGLAHLVLNLYGLFFVGTFIEPLLGKWRLLLVYLVSGILASVAS-LCWY 430
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFI 254
+SVGASGA+ GLF I V+ W W+++ I F++ + A +A + F+
Sbjct: 431 DATISVGASGAIMGLFGILVI----WVWKRVFAKEI--HFIL-SINVAIFVTASVVSGFL 483
Query: 255 GGYSVQSINHIAHLSG 270
GG +++ AH+ G
Sbjct: 484 GG-----VDNAAHIGG 494
>gi|421186400|ref|ZP_15643793.1| membrane-associated serine protease [Oenococcus oeni AWRIB418]
gi|399967353|gb|EJO01835.1| membrane-associated serine protease [Oenococcus oeni AWRIB418]
Length = 241
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 52/91 (57%), Gaps = 3/91 (3%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ T F H++ H+ SN+F L IFG VE+ G L Y+ +G N ++ + P
Sbjct: 72 WYRLFTPIFLHSSLMHIFSNMFTLIIFGPFVEKLFGKTKYLLIYLLSGLWGNLLTLIFDP 131
Query: 195 K-NAVSVGASGAVFGLFAISVLVKMSWDWRK 224
N VSVGASGA+FGLF ++ ++W R
Sbjct: 132 NPNIVSVGASGALFGLFG--AMISIAWFNRN 160
>gi|403238266|ref|ZP_10916852.1| S54 family peptidase [Bacillus sp. 10403023]
Length = 239
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 71/140 (50%), Gaps = 13/140 (9%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+++ VT F H+ + H+ N F L +FG +E G + Y+ TG AAN ++ I P
Sbjct: 58 YWRLVTPIFVHSGFGHMLFNSFSLVLFGPALESMLGKVKFTVVYLLTGVAANLATYYIEP 117
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFI 254
VG+SGA+FGLF I + + + +RK L + Q + ++ G+ TFI
Sbjct: 118 LEFAHVGSSGAIFGLFGIYLYMVV---FRKDLINHMNAQLITTILV------IGLVMTFI 168
Query: 255 GGYSVQSINHIAHLSGALFG 274
++N +AHL G L G
Sbjct: 169 N----SNVNIVAHLFGFLAG 184
>gi|196228586|ref|ZP_03127452.1| Rhomboid family protein [Chthoniobacter flavus Ellin428]
gi|196226867|gb|EDY21371.1| Rhomboid family protein [Chthoniobacter flavus Ellin428]
Length = 223
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 17/155 (10%)
Query: 134 AWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLIL 193
WY T+ F H W HL N++FL+IFG+ VE+ G L Y+ G AA ++
Sbjct: 58 TWYYVFTSMFMHGGWMHLIGNMWFLWIFGRNVEDNCGAIRYLLFYLLCGVAATLSFTIVD 117
Query: 194 PKNAVS-VGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVME----------- 241
P + + VGASGA+ G+ +L ++L ++ LG F+ ++ME
Sbjct: 118 PHSKIPLVGASGAISGILGAYLLHHPR---ARVLTLVPLGPFI--RLMEIPAWMFFLVWI 172
Query: 242 AAQASAGMSGTFIGGYSVQSINHIAHLSGALFGVF 276
Q ++ + + G + + AH+ G + G+F
Sbjct: 173 GLQIASQILASHTHGVQTSGVAYAAHIGGFIAGMF 207
>gi|386384848|ref|ZP_10070191.1| hypothetical protein STSU_17454 [Streptomyces tsukubaensis
NRRL18488]
gi|385667692|gb|EIF91092.1| hypothetical protein STSU_17454 [Streptomyces tsukubaensis
NRRL18488]
Length = 299
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 64/115 (55%), Gaps = 6/115 (5%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ +T+ F H + +H++ N+ L+ G++VE G + Y+ +G + +L+
Sbjct: 135 WYRLLTSVFLHQDLSHIAFNMLALWFLGRMVEPALGRSRFLVLYLLSGLGGDVFVYLLSE 194
Query: 195 KNAVSVGASGAVFGL---FAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQAS 246
N ++GASGA+FGL FA+ +L +M+ D R + LI+ VV V+ + S
Sbjct: 195 PNQATIGASGAIFGLVGAFAV-LLRRMNLDLRPV--GLIIAISVVLTVVRPGEIS 246
>gi|411003693|ref|ZP_11380022.1| hypothetical protein SgloC_12861 [Streptomyces globisporus C-1027]
Length = 301
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 58/97 (59%), Gaps = 2/97 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ VT+ F H HL N+ L+ G +E G Y+ +G A + +++L+
Sbjct: 137 WYRLVTSMFLHQEVVHLGFNMLGLWWLGGQLEAALGRSRYLALYLLSGLAGSALTYLLAA 196
Query: 195 KNAVSVGASGAVFGLF-AISVLV-KMSWDWRKILEVL 229
+N S+GASGAV+GLF A +VL+ +M++D R +L +L
Sbjct: 197 QNQPSLGASGAVYGLFGATAVLMRRMNYDMRPVLILL 233
>gi|154249662|ref|YP_001410487.1| rhomboid family protein [Fervidobacterium nodosum Rt17-B1]
gi|154153598|gb|ABS60830.1| Rhomboid family protein [Fervidobacterium nodosum Rt17-B1]
Length = 224
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 65/133 (48%), Gaps = 16/133 (12%)
Query: 90 ERRKPKKSVNGVFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPA----------WYQFV 139
ER+ P ++IL+N + + +VF+ IKS Y F A WY+ +
Sbjct: 3 ERKNPAY-----LYLILVNSLILLIFYVFKTFFIKSDLAYLLFGAQYGPLIKSGQWYRII 57
Query: 140 TAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVS 199
TA F H + HL+ N++ LYI G E G + Y TG N V+ I ++S
Sbjct: 58 TAMFMHGGFLHLAFNMYALYIIGNYAEGIYGTYRFITYYFITGIVGN-VATHIFYYGSLS 116
Query: 200 VGASGAVFGLFAI 212
VGASGA+FGL +
Sbjct: 117 VGASGAIFGLVGV 129
>gi|423515085|ref|ZP_17491566.1| hypothetical protein IG7_00155 [Bacillus cereus HuA2-4]
gi|401168048|gb|EJQ75316.1| hypothetical protein IG7_00155 [Bacillus cereus HuA2-4]
Length = 182
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 64/129 (49%), Gaps = 8/129 (6%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T+ H + H SN +L++FG +E++ G+F + + +G N S++I+P
Sbjct: 47 WWRVITSLLVHVDLQHFLSNSIYLFVFGSSIEKQLGHFSFIIIFFLSGILGNISSYIIMP 106
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWRK-------ILEVLILGQFVVEKVMEAAQASA 247
+ GASG +FGL + + S +R I ++IL + +A +
Sbjct: 107 LEYIHAGASGGIFGLLGAQLFLLYS-RYRSSKPRDIAIFSIMILILLLFTFFNPSANPIS 165
Query: 248 GMSGTFIGG 256
++G IGG
Sbjct: 166 HLTGLIIGG 174
>gi|15894241|ref|NP_347590.1| hypothetical protein CA_C0954 [Clostridium acetobutylicum ATCC 824]
gi|337736171|ref|YP_004635618.1| hypothetical protein SMB_G0971 [Clostridium acetobutylicum DSM
1731]
gi|384457680|ref|YP_005670100.1| hypothetical protein CEA_G0966 [Clostridium acetobutylicum EA 2018]
gi|15023857|gb|AAK78930.1|AE007610_10 Uncharacterized membrane protein [Clostridium acetobutylicum ATCC
824]
gi|325508369|gb|ADZ20005.1| Conserved hypothetical protein [Clostridium acetobutylicum EA 2018]
gi|336291944|gb|AEI33078.1| hypothetical protein SMB_G0971 [Clostridium acetobutylicum DSM
1731]
Length = 328
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 80/161 (49%), Gaps = 17/161 (10%)
Query: 70 LVCNMSGSDM--ISQLELDKPEERRKPKKSVNGVFWI-ILLNLGLY------------VA 114
L +G+++ I L L++ + R + +K V WI I++N +Y ++
Sbjct: 110 LYAEETGTNIAEIITLFLNELQSREQEQKKDMRVTWILIVINFIVYGISAWLSGNPVAIS 169
Query: 115 DHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGL 174
+ V K+ L N +Y+ +T F HA H+ +N++ LY G ++E G
Sbjct: 170 NQVLNFMGAKNSVLIDN-GQYYRLITCMFLHAGITHIGANMYSLYSMGYMLENIYGKLRY 228
Query: 175 WLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFAISVL 215
Y +G A+F S+ I + ++SVGASGA+FGL +++
Sbjct: 229 TAIYFISGITASFFSY-IFSRESLSVGASGAIFGLLGAAIV 268
>gi|220905674|ref|YP_002480985.1| rhomboid family protein [Cyanothece sp. PCC 7425]
gi|219862285|gb|ACL42624.1| Rhomboid family protein [Cyanothece sp. PCC 7425]
Length = 237
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 75/159 (47%), Gaps = 16/159 (10%)
Query: 132 FPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWL 191
FPAW +T+ F H + H++ N+ FL+IFG VE++ G+F Y+ G A+ W
Sbjct: 65 FPAWITLITSQFLHGGFLHIAGNMLFLWIFGNNVEDQLGHFKYLFFYLACGVLASLTQWF 124
Query: 192 ILPKNAV-SVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVE------------K 238
+ V S+GASGA+ G+ +L + ++L ++ LG F+
Sbjct: 125 FSAYSTVPSLGASGAIAGVMGAYIL---RFPQARVLTLVPLGFFLTTFRIPAIFFLGFWF 181
Query: 239 VMEAAQASAGMSGTFIGGYSVQSINHIAHLSGALFGVFL 277
V +A A ++ G + I + AH G +FG L
Sbjct: 182 VQQALYGLASLNAPANIGMNAGGIAYWAHAGGFVFGAIL 220
>gi|301051972|ref|YP_003790183.1| rhomboid family protein [Bacillus cereus biovar anthracis str. CI]
gi|300374141|gb|ADK03045.1| rhomboid family protein [Bacillus cereus biovar anthracis str. CI]
Length = 156
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 129 YHNFPA---WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAA 185
YH + A W++ +T+ F H + H SN L++ G +E++ G F + + +G
Sbjct: 4 YHEYIANGEWWRLITSLFVHVDLQHFLSNSICLFVLGSSIEKQLGRFSFIIIFFLSGILG 63
Query: 186 NFVSWLILPKNAVSVGASGAVFGLFA 211
N S+LI+P + GASG +FGL
Sbjct: 64 NIFSYLIMPHEYIHAGASGGIFGLLG 89
>gi|65317677|ref|ZP_00390636.1| COG0705: Uncharacterized membrane protein (homolog of Drosophila
rhomboid) [Bacillus anthracis str. A2012]
Length = 167
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 129 YHNFPA---WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAA 185
YH + A W++ +T+ F H + H SN L++ G +E++ G F + + +G
Sbjct: 15 YHEYIANGEWWRLITSLFVHVDLQHFLSNSICLFVLGSSIEKQLGRFSFIIIFFLSGILG 74
Query: 186 NFVSWLILPKNAVSVGASGAVFGLFA 211
N S+LI+P + GASG +FGL
Sbjct: 75 NIFSYLIMPHEYIHAGASGGIFGLLG 100
>gi|392418856|ref|YP_006455461.1| putative membrane protein [Mycobacterium chubuense NBB4]
gi|390618632|gb|AFM19782.1| putative membrane protein [Mycobacterium chubuense NBB4]
Length = 285
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 57/98 (58%), Gaps = 2/98 (2%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
Y+ +TAAF H + H+ N++ LY+ G +E G Y+ + + +++L+ P
Sbjct: 112 YRLLTAAFLHYGFTHILFNMWALYVVGAPLEAALGRLRYGALYLLSALGGSVLAYLLSPL 171
Query: 196 NAVSVGASGAVFGLFAISVLV--KMSWDWRKILEVLIL 231
N+ + GASGAVFGLF +V K++ D R ++ +++L
Sbjct: 172 NSATAGASGAVFGLFGALFVVGRKLNMDVRGVVVIIVL 209
>gi|304384713|ref|ZP_07367059.1| rhomboid family integral membrane protein [Pediococcus acidilactici
DSM 20284]
gi|418068986|ref|ZP_12706266.1| membrane-associated serine protease [Pediococcus acidilactici
MA18/5M]
gi|304328907|gb|EFL96127.1| rhomboid family integral membrane protein [Pediococcus acidilactici
DSM 20284]
gi|357537719|gb|EHJ21742.1| membrane-associated serine protease [Pediococcus acidilactici
MA18/5M]
Length = 229
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 72/144 (50%), Gaps = 12/144 (8%)
Query: 134 AWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLIL 193
W T+ F H + HL N+ LY G+L+E+ G+ L Y+ +G AN VS
Sbjct: 60 GWASLFTSMFVHIGFEHLLFNMITLYFIGRLLEQVIGHGRFLLIYLLSGIFANVVSLAFA 119
Query: 194 PKNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTF 253
N++S GASGA+FG+ I V + M+ +R + +G+ ++ + A +GM GT
Sbjct: 120 APNSISAGASGAIFGI--IGVWIMMAEQYRNYPFLAGMGRQML--IFSALGIVSGMFGT- 174
Query: 254 IGGYSVQSINHIAHLSGALFGVFL 277
+I+ AHL G + G L
Sbjct: 175 -------NIDIFAHLGGLVAGFLL 191
>gi|187934985|ref|YP_001884978.1| rhomboid family protein [Clostridium botulinum B str. Eklund 17B]
gi|187723138|gb|ACD24359.1| rhomboid family protein [Clostridium botulinum B str. Eklund 17B]
Length = 321
Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 74/160 (46%), Gaps = 39/160 (24%)
Query: 133 PAWYQ-----FVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGL--WLSYIFTGAAA 185
P YQ +T AF H HL SN++ LYI G VE FGL +L FT A
Sbjct: 177 PLIYQGEIWRLITCAFLHGGIAHLLSNMYSLYILGPQVERI---FGLKKYLCIYFTSAIT 233
Query: 186 NFVSWLILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQA 245
+ + ++L +N+VSVGASGA+FGL LG ++ + E +
Sbjct: 234 SSLLSVLLNENSVSVGASGAIFGL---------------------LGAILIFSIKERHRI 272
Query: 246 SAGMSGTFIG--------GYSVQSINHIAHLSGALFGVFL 277
G +G G++++ I+++ H+ G L G+ +
Sbjct: 273 KKGYILNLVGIIILILMSGFTIRGIDNLGHIGGFLGGLIM 312
>gi|427439986|ref|ZP_18924515.1| rhomboid family integral membrane protein [Pediococcus lolii NGRI
0510Q]
gi|425787818|dbj|GAC45303.1| rhomboid family integral membrane protein [Pediococcus lolii NGRI
0510Q]
Length = 229
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 72/144 (50%), Gaps = 12/144 (8%)
Query: 134 AWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLIL 193
W T+ F H + HL N+ LY G+L+E+ G+ L Y+ +G AN VS
Sbjct: 60 GWASLFTSMFVHIGFEHLLFNMITLYFIGRLLEQVIGHGRFLLIYLLSGIFANVVSLAFA 119
Query: 194 PKNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTF 253
N++S GASGA+FG+ I V + M+ +R + +G+ ++ + A +GM GT
Sbjct: 120 APNSISAGASGAIFGI--IGVWIMMAEQYRNYPFLAGMGRQML--IFSALGIVSGMFGT- 174
Query: 254 IGGYSVQSINHIAHLSGALFGVFL 277
+I+ AHL G + G L
Sbjct: 175 -------NIDIFAHLGGLVAGFLL 191
>gi|372325402|ref|ZP_09519991.1| GlpG-like protein [Oenococcus kitaharae DSM 17330]
gi|366984210|gb|EHN59609.1| GlpG-like protein [Oenococcus kitaharae DSM 17330]
Length = 234
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 70/144 (48%), Gaps = 13/144 (9%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ T F HA+ H+ SN+ L I G VE+ G L Y+ TG N ++++ P
Sbjct: 63 WYRAFTPIFLHASLMHIFSNMLTLVIVGPFVEKLFGKGKFLLIYLITGVWGNLLTFIFDP 122
Query: 195 K-NAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTF 253
N VSVGASGA+FGLF V++ W R FV + + A A +
Sbjct: 123 NPNVVSVGASGALFGLFG--VMIVSGWYNRN--------NFVFRRQLIIFAALAVFN--L 170
Query: 254 IGGYSVQSINHIAHLSGALFGVFL 277
IG + S++ AH+ G + G L
Sbjct: 171 IGNLNDPSVDIWAHIGGLISGSLL 194
>gi|383786745|ref|YP_005471314.1| hypothetical protein [Fervidobacterium pennivorans DSM 9078]
gi|383109592|gb|AFG35195.1| putative membrane protein [Fervidobacterium pennivorans DSM 9078]
Length = 233
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 66/135 (48%), Gaps = 17/135 (12%)
Query: 85 LDKPEERRKPKKSVNGVFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPA---------- 134
LDK RR+ +II+++ + +A +V Q + Y Y F A
Sbjct: 5 LDKIASRRQLYM------YIIMIDSIILLAFYVVQTFFVSEPYAYLLFGAQYGPLVDQGE 58
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ VTA F H + HL+ N++ LYI G E G + +I TG A N +
Sbjct: 59 WWRIVTAMFMHGGFLHLAFNMYALYILGSYAEGIYGTYRFLSYFILTGIAGNIATHFFY- 117
Query: 195 KNAVSVGASGAVFGL 209
+++SVGASGA+FGL
Sbjct: 118 HDSLSVGASGAIFGL 132
>gi|443626016|ref|ZP_21110448.1| putative membrane protein [Streptomyces viridochromogenes Tue57]
gi|443340440|gb|ELS54650.1| putative membrane protein [Streptomyces viridochromogenes Tue57]
Length = 313
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 60/99 (60%), Gaps = 2/99 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ +T+ F H ++ H+ N+ L+ G +E G Y+ +G A + +++LI
Sbjct: 150 WYRLLTSMFLHGSYIHILFNMLSLWWIGGPLEAALGRVRYIALYLVSGLAGSALTYLIAA 209
Query: 195 KNAVSVGASGAVFGLF-AISVLV-KMSWDWRKILEVLIL 231
N S+GASGA+FGLF A +VL+ ++ +D R ++ +L++
Sbjct: 210 ANQPSLGASGAIFGLFGATAVLMRRLQYDMRPVIALLVI 248
>gi|383636302|ref|ZP_09950708.1| hypothetical protein SchaN1_02019 [Streptomyces chartreusis NRRL
12338]
Length = 296
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 60/99 (60%), Gaps = 2/99 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ VT+ F H H++ N+ L+ G +E G Y+ +G A + +++L+
Sbjct: 132 WYRLVTSMFTHQEIWHIAFNMLSLWWLGGPLEAALGRVRYLALYLVSGLAGSTLAYLLTS 191
Query: 195 KNAVSVGASGAVFGLF-AISVLV-KMSWDWRKILEVLIL 231
N ++GASGA+FGLF A +VL+ ++++D R I+ +L++
Sbjct: 192 PNTATLGASGAIFGLFGATAVLMRRLNYDMRPIIALLVI 230
>gi|429503970|ref|YP_007185154.1| rhomboid protease [Bacillus amyloliquefaciens subsp. plantarum
AS43.3]
gi|429485560|gb|AFZ89484.1| rhomboid protease [Bacillus amyloliquefaciens subsp. plantarum
AS43.3]
Length = 199
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 48/84 (57%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ VT F HAN+ HL N L++F +E+ G + YI +G N ++L P
Sbjct: 58 WWRLVTPMFLHANFTHLLFNSMSLFLFAPPLEQMLGKVRFLIVYIVSGIIGNIGTYLAEP 117
Query: 195 KNAVSVGASGAVFGLFAISVLVKM 218
+ V VGASGA+FGLF + V + +
Sbjct: 118 LDYVHVGASGAIFGLFGVYVFLTV 141
>gi|455648311|gb|EMF27191.1| hypothetical protein H114_20747 [Streptomyces gancidicus BKS 13-15]
Length = 295
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 59/99 (59%), Gaps = 2/99 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ VT+ F H H+ N+ L++ G +E+ G Y+ +G A + +++L+
Sbjct: 132 WYRLVTSMFTHEEIWHIGFNMLSLWLLGGPLEQHLGRARYLALYLISGLAGSALTYLLAG 191
Query: 195 KNAVSVGASGAVFGLF-AISVLV-KMSWDWRKILEVLIL 231
S+GASGAVFGLF A +VL+ ++ +D R I+ +L++
Sbjct: 192 GGTASLGASGAVFGLFGATAVLMRRLRYDMRPIVALLVI 230
>gi|302559651|ref|ZP_07311993.1| rhomboid family protein [Streptomyces griseoflavus Tu4000]
gi|302477269|gb|EFL40362.1| rhomboid family protein [Streptomyces griseoflavus Tu4000]
Length = 295
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 75/142 (52%), Gaps = 20/142 (14%)
Query: 107 LNLGLYVADHVFQVRS--IKSLYLYHNFP-------------AWYQFVTAAFCHANWNHL 151
+NL +++A QVR ++ LYL +P WY+ T+ F H H+
Sbjct: 92 INLAVFLA---VQVRPSLVRDLYLIGTWPPAPFLPTQGVAEGEWYRLFTSMFTHQEIWHI 148
Query: 152 SSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLF- 210
+ N+ L+ G +E+ G Y+ +G A +++L+ S+GASGA+FGLF
Sbjct: 149 AFNMLSLWWLGGPLEQALGRVRYLTLYLISGLAGGALTYLLASGTTASLGASGAIFGLFG 208
Query: 211 AISVLV-KMSWDWRKILEVLIL 231
A +VL+ ++++D R ++ +L++
Sbjct: 209 ATAVLMRRLNYDMRPVIALLVI 230
>gi|376283529|ref|YP_005156739.1| hypothetical protein CD31A_0026 [Corynebacterium diphtheriae 31A]
gi|371577044|gb|AEX40712.1| putative membrane protein [Corynebacterium diphtheriae 31A]
Length = 205
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
Query: 129 YHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFV 188
Y + W + V F H+ HL+ N+F L+ FG+ +E G+ L+YI +G A+
Sbjct: 60 YSHGLGWLRMVGTVFLHSGPTHLALNMFMLFFFGREIEHYLGSGRFTLAYIVSGIGASAT 119
Query: 189 SWLILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILE 227
L+ P A +VGASGAV+GL AI V MS+ R+ L
Sbjct: 120 VLLMDPL-APTVGASGAVYGLMAI--FVSMSYRLRRDLT 155
>gi|451794589|gb|AGF64638.1| hypothetical protein SHJGH_4975 [Streptomyces hygroscopicus subsp.
jinggangensis TL01]
Length = 295
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 56/99 (56%), Gaps = 2/99 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+FVT+ F H + H+ N+ L+ G +E G Y +G A +++L+
Sbjct: 132 WYRFVTSMFAHQEYWHIGFNMLSLWWIGGPLEAALGRARYLAVYFVSGLAGGALTYLLTS 191
Query: 195 KNAVSVGASGAVFGLFAISVLV--KMSWDWRKILEVLIL 231
S+GASGA+FGLF + ++ ++++D R ++ +L++
Sbjct: 192 PQTASLGASGAIFGLFGATAVLMRRLNYDMRPVIALLVI 230
>gi|270290405|ref|ZP_06196630.1| membrane-associated serine protease [Pediococcus acidilactici 7_4]
gi|270281186|gb|EFA27019.1| membrane-associated serine protease [Pediococcus acidilactici 7_4]
Length = 222
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 72/144 (50%), Gaps = 12/144 (8%)
Query: 134 AWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLIL 193
W T+ F H + HL N+ LY G+L+E+ G+ L Y+ +G AN VS
Sbjct: 53 GWASLFTSMFVHIGFEHLLFNMITLYFIGRLLEQVIGHGRFLLIYLLSGIFANVVSLAFA 112
Query: 194 PKNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTF 253
N++S GASGA+FG+ I V + M+ +R + +G+ ++ + A +GM GT
Sbjct: 113 APNSISAGASGAIFGI--IGVWIMMAEQYRNYPFLAGMGRQML--IFSALGIVSGMFGT- 167
Query: 254 IGGYSVQSINHIAHLSGALFGVFL 277
+I+ AHL G + G L
Sbjct: 168 -------NIDIFAHLGGLVAGFLL 184
>gi|326778165|ref|ZP_08237430.1| Peptidase S54, rhomboid domain protein [Streptomyces griseus
XylebKG-1]
gi|326658498|gb|EGE43344.1| Peptidase S54, rhomboid domain protein [Streptomyces griseus
XylebKG-1]
Length = 300
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 59/99 (59%), Gaps = 2/99 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ VT+ F H H++ N+ L+ G +E G Y+ +G A + +++LI
Sbjct: 137 WYRLVTSMFLHQEVVHIAFNMLGLWWLGGQLEAALGRSRYLALYLLSGLAGSALTYLIAA 196
Query: 195 KNAVSVGASGAVFGLF-AISVLV-KMSWDWRKILEVLIL 231
N S+GASGAV+GLF A +VL+ +M++D R +L +L +
Sbjct: 197 PNQGSLGASGAVYGLFGATAVLMRRMNYDMRPVLVLLAI 235
>gi|419861887|ref|ZP_14384511.1| hypothetical protein W5M_11313 [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
gi|387981722|gb|EIK55267.1| hypothetical protein W5M_11313 [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
Length = 205
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
Query: 129 YHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFV 188
Y + W + V F H+ HL+ N+F L+ FG+ +E G+ L+YI +G A+
Sbjct: 60 YSHGLGWLRMVGTVFLHSGPTHLALNMFMLFFFGREIEHYLGSGRFTLAYIVSGIGASAT 119
Query: 189 SWLILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILE 227
L+ P A +VGASGAV+GL AI V MS+ R+ L
Sbjct: 120 VLLMDPL-APTVGASGAVYGLMAI--FVAMSYRLRRDLT 155
>gi|376247391|ref|YP_005139335.1| hypothetical protein CDHC04_0024 [Corynebacterium diphtheriae HC04]
gi|372113959|gb|AEX80017.1| putative membrane protein [Corynebacterium diphtheriae HC04]
Length = 205
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
Query: 129 YHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFV 188
Y + W + V F H+ HL+ N+F L+ FG+ +E G+ L+YI +G A+
Sbjct: 60 YSHGLGWLRMVGTVFLHSGPTHLALNMFMLFFFGREIEHYLGSGRFTLAYIVSGIGASAT 119
Query: 189 SWLILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILE 227
L+ P A +VGASGAV+GL AI V MS+ R+ L
Sbjct: 120 VLLMDPL-APTVGASGAVYGLMAI--FVAMSYRLRRDLT 155
>gi|386841294|ref|YP_006246352.1| hypothetical protein SHJG_5211 [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|374101595|gb|AEY90479.1| hypothetical protein SHJG_5211 [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
Length = 281
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 56/99 (56%), Gaps = 2/99 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+FVT+ F H + H+ N+ L+ G +E G Y +G A +++L+
Sbjct: 118 WYRFVTSMFAHQEYWHIGFNMLSLWWIGGPLEAALGRARYLAVYFVSGLAGGALTYLLTS 177
Query: 195 KNAVSVGASGAVFGLFAISVLV--KMSWDWRKILEVLIL 231
S+GASGA+FGLF + ++ ++++D R ++ +L++
Sbjct: 178 PQTASLGASGAIFGLFGATAVLMRRLNYDMRPVIALLVI 216
>gi|376244587|ref|YP_005134826.1| hypothetical protein CDHC01_0025 [Corynebacterium diphtheriae HC01]
gi|372107217|gb|AEX73278.1| putative membrane protein [Corynebacterium diphtheriae HC01]
Length = 205
Score = 60.8 bits (146), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 55/98 (56%), Gaps = 3/98 (3%)
Query: 129 YHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFV 188
Y + W + V F H+ HL+ N+F L+ FG+ +E G+ L+YI +G A+
Sbjct: 60 YSHGLGWLRMVGTVFLHSGPTHLALNMFMLFFFGREIEHYLGSGRFTLAYIVSGIGASAT 119
Query: 189 SWLILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKIL 226
L+ P A +VGASGAV+GL AI V MS+ R+ L
Sbjct: 120 VLLMDPL-APTVGASGAVYGLMAI--FVAMSYRLRRDL 154
>gi|38232669|ref|NP_938436.1| hypothetical protein DIP0027 [Corynebacterium diphtheriae NCTC
13129]
gi|376253148|ref|YP_005141607.1| hypothetical protein CDPW8_0020 [Corynebacterium diphtheriae PW8]
gi|376256043|ref|YP_005143934.1| hypothetical protein CDVA01_0025 [Corynebacterium diphtheriae VA01]
gi|376286557|ref|YP_005159123.1| hypothetical protein CDBH8_0029 [Corynebacterium diphtheriae BH8]
gi|376292146|ref|YP_005163820.1| hypothetical protein CDHC02_0028 [Corynebacterium diphtheriae HC02]
gi|38198927|emb|CAE48538.1| Putative membrane protein [Corynebacterium diphtheriae]
gi|371583891|gb|AEX47556.1| putative membrane protein [Corynebacterium diphtheriae BH8]
gi|372109469|gb|AEX75529.1| putative membrane protein [Corynebacterium diphtheriae HC02]
gi|372116232|gb|AEX68702.1| putative membrane protein [Corynebacterium diphtheriae PW8]
gi|372118560|gb|AEX82294.1| putative membrane protein [Corynebacterium diphtheriae VA01]
Length = 205
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
Query: 129 YHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFV 188
Y + W + V F H+ HL+ N+F L+ FG+ +E G+ L+YI +G A+
Sbjct: 60 YSHGLGWLRMVGTVFLHSGPTHLALNMFMLFFFGREIEHYLGSGRFTLAYIVSGIGASAT 119
Query: 189 SWLILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILE 227
L+ P A +VGASGAV+GL AI V MS+ R+ L
Sbjct: 120 VLLMDPL-APTVGASGAVYGLMAI--FVAMSYRLRRDLT 155
>gi|423398825|ref|ZP_17376026.1| hypothetical protein ICU_04519 [Bacillus cereus BAG2X1-1]
gi|423409727|ref|ZP_17386876.1| hypothetical protein ICY_04412 [Bacillus cereus BAG2X1-3]
gi|401646009|gb|EJS63643.1| hypothetical protein ICU_04519 [Bacillus cereus BAG2X1-1]
gi|401652842|gb|EJS70394.1| hypothetical protein ICY_04412 [Bacillus cereus BAG2X1-3]
Length = 190
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 65/132 (49%), Gaps = 8/132 (6%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T+ H + H SN L++ G +E++ G+F L + +G + N S++I+P
Sbjct: 47 WWRLITSLLVHVDLQHFLSNSICLFVLGSSIEKQLGHFSFILIFFLSGISGNISSYIIMP 106
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWRK-------ILEVLILGQFVVEKVMEAAQASA 247
+ GASG++FGL + + S +R I ++IL + +A +
Sbjct: 107 LEYIHAGASGSIFGLLGAQLFLLYS-RYRSSRPKEIAIFSIMILILLLFTFFNPSANPIS 165
Query: 248 GMSGTFIGGYSV 259
++G IGG S
Sbjct: 166 HLTGLIIGGVST 177
>gi|392972219|ref|ZP_10337611.1| rhomboid family protein [Staphylococcus equorum subsp. equorum Mu2]
gi|392509932|emb|CCI60913.1| rhomboid family protein [Staphylococcus equorum subsp. equorum Mu2]
Length = 391
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 77/143 (53%), Gaps = 15/143 (10%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ +++ F H ++ H+ N+ L+IFGK+VE G++ + + YI G NF S L
Sbjct: 107 WYRLISSIFLHYDFEHILMNMLSLFIFGKIVESIVGHWRMIVIYIVAGLFGNFAS-LSFN 165
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFI 254
+ VS GASGA+FGL I + + ++ LI GQ ++ V+ G+S
Sbjct: 166 IDTVSAGASGAIFGL--IGAIFGFMYVGKQFNRKLI-GQLLIVLVI-----MIGLS---- 213
Query: 255 GGYSVQSINHIAHLSGALFGVFL 277
+Q+IN +AH+ G + G+ +
Sbjct: 214 --LFMQNINIVAHIGGFVGGLLI 234
>gi|376250196|ref|YP_005137077.1| hypothetical protein CDHC03_0028 [Corynebacterium diphtheriae HC03]
gi|372111700|gb|AEX77759.1| putative membrane protein [Corynebacterium diphtheriae HC03]
Length = 205
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
Query: 129 YHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFV 188
Y + W + V F H+ HL+ N+F L+ FG+ +E G+ L+YI +G A+
Sbjct: 60 YSHGLGWLRMVGTVFLHSGPTHLALNMFMLFFFGREIEHYLGSGRFTLAYIVSGIGASAT 119
Query: 189 SWLILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILE 227
L+ P A +VGASGAV+GL AI V MS+ R+ L
Sbjct: 120 VLLMDPL-APTVGASGAVYGLMAI--FVAMSYRLRRDLT 155
>gi|375289754|ref|YP_005124294.1| hypothetical protein CD241_0025 [Corynebacterium diphtheriae 241]
gi|371579425|gb|AEX43092.1| putative membrane protein [Corynebacterium diphtheriae 241]
Length = 204
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 55/98 (56%), Gaps = 3/98 (3%)
Query: 129 YHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFV 188
Y + W + V F H+ HL+ N+F L+ FG+ +E G+ L+YI +G A+
Sbjct: 59 YSHGLGWLRMVGTVFLHSGPTHLALNMFMLFFFGREIEHYLGSGRFTLAYIVSGIGASAT 118
Query: 189 SWLILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKIL 226
L+ P A +VGASGAV+GL AI V MS+ R+ L
Sbjct: 119 VLLMDPL-APTVGASGAVYGLMAI--FVAMSYRLRRDL 153
>gi|331092038|ref|ZP_08340869.1| hypothetical protein HMPREF9477_01512 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330402239|gb|EGG81810.1| hypothetical protein HMPREF9477_01512 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 203
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 77/147 (52%), Gaps = 18/147 (12%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+Y+ +T+ F H + HL +N+ L+ G ++EEE G+F L Y +G A N +S +
Sbjct: 53 YYRLITSIFLHFGFAHLMNNMVMLFFLGSILEEEIGSFKYLLLYFVSGVAGNILSAFMDL 112
Query: 195 KNA---VSVGASGAVFGLF-AISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMS 250
K +S GASGA+FG+ A+ ++V + + L+ G+ +V V+ +
Sbjct: 113 KTGEFVISAGASGAIFGVIGALLIIVTKNHGHLRTLD----GRGMVFMVVCSLYH----- 163
Query: 251 GTFIGGYSVQSINHIAHLSGALFGVFL 277
G++ ++++AH+ G L G+ L
Sbjct: 164 -----GFTSTGVDNMAHIGGLLSGILL 185
>gi|182437510|ref|YP_001825229.1| hypothetical protein SGR_3717 [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|178466026|dbj|BAG20546.1| putative membrane protein [Streptomyces griseus subsp. griseus NBRC
13350]
Length = 285
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 59/99 (59%), Gaps = 2/99 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ VT+ F H H++ N+ L+ G +E G Y+ +G A + +++LI
Sbjct: 122 WYRLVTSMFLHQEVVHIAFNMLGLWWLGGQLEAALGRSRYLALYLLSGLAGSALTYLIAA 181
Query: 195 KNAVSVGASGAVFGLF-AISVLV-KMSWDWRKILEVLIL 231
N S+GASGAV+GLF A +VL+ +M++D R +L +L +
Sbjct: 182 PNQGSLGASGAVYGLFGATAVLMRRMNYDMRPVLVLLAI 220
>gi|428297986|ref|YP_007136292.1| Peptidase S54, rhomboid domain-containing protein [Calothrix sp.
PCC 6303]
gi|428234530|gb|AFZ00320.1| Peptidase S54, rhomboid domain protein [Calothrix sp. PCC 6303]
Length = 223
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 79/157 (50%), Gaps = 20/157 (12%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W T+ F H W HL SN+ FL++FG +E+ G+ + Y+ GA A WL
Sbjct: 61 WTTLFTSQFLHGGWWHLISNMVFLWVFGNNIEDRMGHLKYLIFYLCCGALAALCQWLFGV 120
Query: 195 KNAV-SVGASGAVFGLFAISVL----VKMS--------WDWRKILEVLILGQFVVEKVME 241
+ + S+GASGA+ G+ ++ VK+ + +I +++G F+V+ V+
Sbjct: 121 NSVIPSLGASGAISGVLGAYLIRFPQVKVMTLAFLGFFFTTLRIPAFVLIGLFIVQNVIS 180
Query: 242 A-AQASAGMSGTFIGGYSVQSINHIAHLSGALFGVFL 277
AQ ++ MS GG + + AH+ G +FG+ L
Sbjct: 181 GLAQVASQMSVD--GG----GVAYWAHIGGFVFGIIL 211
>gi|335430608|ref|ZP_08557497.1| rhomboid family protein [Haloplasma contractile SSD-17B]
gi|335431252|ref|ZP_08558135.1| rhomboid family protein [Haloplasma contractile SSD-17B]
gi|334886957|gb|EGM25302.1| rhomboid family protein [Haloplasma contractile SSD-17B]
gi|334887825|gb|EGM26144.1| rhomboid family protein [Haloplasma contractile SSD-17B]
Length = 214
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 69/128 (53%), Gaps = 7/128 (5%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFF-LYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLIL 193
+Y+F+TA F H N+ H+ N+FF L I G +E G+ ++ Y TG A+++ +L+
Sbjct: 69 FYRFLTAMFLHGNFLHILFNMFFGLIILGAALEGLIGSTRFFIVYFLTGIASSYGVYLLS 128
Query: 194 PKNAVSVGASGAVFGLFAISVLV------KMSWDWRKILEVLILGQFVVEKVMEAAQASA 247
V+VGASGA++G+ + + + + ++ RK++ LI+ ++ V+
Sbjct: 129 GPYTVTVGASGAIYGILGVLLFMIVFKKTLVPYNDRKLIAQLIILNVILSFVLSGISLEG 188
Query: 248 GMSGTFIG 255
+SG G
Sbjct: 189 HLSGLIAG 196
>gi|326792345|ref|YP_004310166.1| peptidase S9 prolyl oligopeptidase active site domain-containing
protein [Clostridium lentocellum DSM 5427]
gi|326543109|gb|ADZ84968.1| Peptidase S54, rhomboid domain [Clostridium lentocellum DSM 5427]
Length = 518
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 68/143 (47%), Gaps = 16/143 (11%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+++F+T F H + HL N + LYI G LVE G SY+ G N S+L +P
Sbjct: 230 YWRFITPIFLHGSLMHLLVNCYSLYIIGSLVERLYGRGRFITSYLIAGILGNLCSFLFVP 289
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFI 254
SVGASGA+FGL I + + R + + G ++ ++ +
Sbjct: 290 --GPSVGASGAIFGLMGILLYFGLE---RPLQFKVYFGSSIITTILI----------NLV 334
Query: 255 GGYSVQSINHIAHLSGALFGVFL 277
G+S I++ AHL G L G FL
Sbjct: 335 YGFSSTGIDNFAHL-GGLIGGFL 356
>gi|254459891|ref|ZP_05073307.1| peptidase, S54 (rhomboid) family [Rhodobacterales bacterium
HTCC2083]
gi|206676480|gb|EDZ40967.1| peptidase, S54 (rhomboid) family [Rhodobacteraceae bacterium
HTCC2083]
Length = 255
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
Y VT+ F H H+ N+ FL+IFG +E+E G+ G + Y+ +G A W++ P
Sbjct: 70 YTLVTSQFLHGGIMHIGGNMLFLWIFGDNMEDEMGHIGFLIFYLVSGVFAALAQWIVEPS 129
Query: 196 NA-VSVGASGAVFGLFA 211
+ V++GASGA+ G+
Sbjct: 130 STIVTIGASGAIAGVMG 146
>gi|160878203|ref|YP_001557171.1| rhomboid family protein [Clostridium phytofermentans ISDg]
gi|160426869|gb|ABX40432.1| Rhomboid family protein [Clostridium phytofermentans ISDg]
Length = 396
Score = 60.5 bits (145), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 75/149 (50%), Gaps = 22/149 (14%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVS----- 189
+Y+ +T F HAN +HL +N+ L I G +E G F L Y +G A S
Sbjct: 249 YYRLLTYQFLHANISHLVNNMLILAIMGSTLERHVGKFKYLLIYFLSGIVAGIASMSYNM 308
Query: 190 WLILPKNAVSVGASGAVFGLF-AISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAG 248
W L N S+GASGAVFG+ AI+++V ++ + LE + Q ++ +
Sbjct: 309 WKGLFSN--SIGASGAVFGVIGAIALIVVVN---KGRLETIGTRQIIIFIAL-------- 355
Query: 249 MSGTFIGGYSVQSINHIAHLSGALFGVFL 277
+ GG++ Q +++ AH+ G L G F+
Sbjct: 356 ---SLYGGFTSQGVDNAAHVGGLLAGFFI 381
>gi|172037867|ref|YP_001804368.1| S54 family peptidase [Cyanothece sp. ATCC 51142]
gi|354556353|ref|ZP_08975649.1| Peptidase S54, rhomboid domain protein [Cyanothece sp. ATCC 51472]
gi|171699321|gb|ACB52302.1| putative peptidase, S54 (Rhomboid) family [Cyanothece sp. ATCC
51142]
gi|353551790|gb|EHC21190.1| Peptidase S54, rhomboid domain protein [Cyanothece sp. ATCC 51472]
Length = 233
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 60/116 (51%), Gaps = 4/116 (3%)
Query: 128 LYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANF 187
YH P W T+ F HA + H++ N+ FL+IFG VE++ G+ + Y+ G A
Sbjct: 62 FYHPIPEWMTLFTSQFLHAGFLHIAGNMLFLWIFGNNVEDKLGHVKYLIFYLTCGVLAGL 121
Query: 188 VSWLILPKNAV-SVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEA 242
W P + V S+GASGA+ G+ +L + ++L ++ LG F+ + A
Sbjct: 122 SQWYFAPYSEVPSLGASGAIAGVMGAYIL---RFPQAQVLTLIPLGIFITTIRIPA 174
>gi|375292001|ref|YP_005126540.1| hypothetical protein CDB402_0026 [Corynebacterium diphtheriae INCA
402]
gi|376241724|ref|YP_005132576.1| hypothetical protein CDCE8392_0024 [Corynebacterium diphtheriae
CDCE 8392]
gi|376289234|ref|YP_005161481.1| hypothetical protein CDC7B_0026 [Corynebacterium diphtheriae C7
(beta)]
gi|371581672|gb|AEX45338.1| putative membrane protein [Corynebacterium diphtheriae INCA 402]
gi|372102630|gb|AEX66227.1| putative membrane protein [Corynebacterium diphtheriae C7 (beta)]
gi|372104966|gb|AEX71028.1| putative membrane protein [Corynebacterium diphtheriae CDCE 8392]
Length = 214
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
Query: 129 YHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFV 188
Y + W + V F H+ HL+ N+F L+ FG+ +E G+ L+YI +G A+
Sbjct: 69 YSHGLGWLRMVGTVFLHSGPTHLALNMFMLFFFGREIEHYLGSGRFTLAYIVSGIGASAT 128
Query: 189 SWLILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILE 227
L+ P A +VGASGAV+GL AI V MS+ R+ L
Sbjct: 129 VLLMDPL-APTVGASGAVYGLMAI--FVAMSYRLRRDLT 164
>gi|357390844|ref|YP_004905685.1| putative peptidase S54 family protein [Kitasatospora setae KM-6054]
gi|311897321|dbj|BAJ29729.1| putative peptidase S54 family protein [Kitasatospora setae KM-6054]
Length = 307
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 77/167 (46%), Gaps = 25/167 (14%)
Query: 78 DMISQLELDKPEERRKPKKSVNGVFWI--------ILLNLGLYV---ADHVFQVRSIKSL 126
+ + E + R+P+ S G+ + +L+ + L V +V Q L
Sbjct: 61 ECVHGAEARQERAARQPRTSAGGLLALGDGALVTKVLIGINLLVFLFTQYVDQSWQKNPL 120
Query: 127 YLYHNFPA-------------WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFG 173
+Y PA WY+ V+A F H H+++N+F L++ G +E G
Sbjct: 121 GMYSWAPAPWERHGVAEGPLEWYRLVSAQFVHGGLMHIAANVFSLWVLGPQLERVLGRAR 180
Query: 174 LWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLF-AISVLVKMS 219
Y+ +G A N + +L+ + +VGASGA+FGL A +VL +++
Sbjct: 181 YLTLYLVSGIAGNALGYLLTGADMWAVGASGAIFGLLGATAVLFRVT 227
>gi|451348178|ref|YP_007446809.1| rhomboid protease [Bacillus amyloliquefaciens IT-45]
gi|449851936|gb|AGF28928.1| rhomboid protease [Bacillus amyloliquefaciens IT-45]
Length = 199
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 48/84 (57%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ VT F HAN+ HL N L++F +E+ G + YI +G N ++L P
Sbjct: 58 WWRLVTPMFLHANFTHLLFNSMSLFLFAPPLEQMLGKVRFLIVYIASGIIGNIGTYLAEP 117
Query: 195 KNAVSVGASGAVFGLFAISVLVKM 218
+ V VGASGA+FGLF + V + +
Sbjct: 118 LDYVHVGASGAIFGLFGVYVFLTV 141
>gi|154684964|ref|YP_001420125.1| hypothetical protein RBAM_004950 [Bacillus amyloliquefaciens FZB42]
gi|375361124|ref|YP_005129163.1| Rhomboid-like protease 4 [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|384264056|ref|YP_005419763.1| putative RNA binding protein containing S1 RNA binding domain,YdcI
[Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|387896968|ref|YP_006327264.1| rhomboid protease [Bacillus amyloliquefaciens Y2]
gi|421732888|ref|ZP_16172004.1| rhomboid protease [Bacillus amyloliquefaciens subsp. plantarum M27]
gi|452854498|ref|YP_007496181.1| Putative rhomboid protease ydcA [Bacillus amyloliquefaciens subsp.
plantarum UCMB5036]
gi|154350815|gb|ABS72894.1| YdcA [Bacillus amyloliquefaciens FZB42]
gi|371567118|emb|CCF03968.1| Rhomboid-like protease 4 [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|380497409|emb|CCG48447.1| putative RNA binding protein containing S1 RNA binding domain,YdcI
[Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|387171078|gb|AFJ60539.1| Rhomboid protease [Bacillus amyloliquefaciens Y2]
gi|407073249|gb|EKE46246.1| rhomboid protease [Bacillus amyloliquefaciens subsp. plantarum M27]
gi|452078758|emb|CCP20509.1| Putative rhomboid protease ydcA [Bacillus amyloliquefaciens subsp.
plantarum UCMB5036]
Length = 199
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 48/84 (57%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ VT F HAN+ HL N L++F +E+ G + YI +G N ++L P
Sbjct: 58 WWRLVTPMFLHANFTHLLFNSMSLFLFAPPLEQMLGKVRFLIVYIASGIIGNIGTYLAEP 117
Query: 195 KNAVSVGASGAVFGLFAISVLVKM 218
+ V VGASGA+FGLF + V + +
Sbjct: 118 LDYVHVGASGAIFGLFGVYVFLTV 141
>gi|311742190|ref|ZP_07716000.1| rhomboid family protein [Aeromicrobium marinum DSM 15272]
gi|311314683|gb|EFQ84590.1| rhomboid family protein [Aeromicrobium marinum DSM 15272]
Length = 283
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
Query: 134 AWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLIL 193
+++ +T+AF HA HL N++ LY+FG VE G+ +Y+ + V +L+
Sbjct: 121 GYWRLLTSAFLHAGVLHLLFNMYALYLFGPFVERALGSARYVAAYLTMAVFSGAVVYLLT 180
Query: 194 PKNAVSVGASGAVFGLF--AISVLVKMSWDWRKILEVL 229
+VGASGAVFGLF A+ +LV+ D R +L +L
Sbjct: 181 DPRTFTVGASGAVFGLFGYALVLLVRAKQDVRTLLVLL 218
>gi|196228587|ref|ZP_03127453.1| Rhomboid family protein [Chthoniobacter flavus Ellin428]
gi|196226868|gb|EDY21372.1| Rhomboid family protein [Chthoniobacter flavus Ellin428]
Length = 246
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 73/156 (46%), Gaps = 18/156 (11%)
Query: 134 AWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLIL 193
W T+ F H W HL N++FL+IFG +EE G G Y+ +G AA L+
Sbjct: 85 CWRYVFTSMFMHGGWAHLLGNMWFLWIFGDDIEEHCGAVGYLFLYLLSGVAAVLAFTLVA 144
Query: 194 PKNAVS-VGASGAVFGLFA----------ISVLVKMSWDW-RKILEVLILGQFVVEKVME 241
P+ V VGASGA+ G+ I LV + W R I + L ++V +V+
Sbjct: 145 PQGEVPLVGASGAISGVLGAYFLQRPDAQIKTLVFFPYIWIRNIPGLFFLLYWIVLQVV- 203
Query: 242 AAQASAGMSGTFIGGYSVQSINHIAHLSGALFGVFL 277
+Q A + GG + + AH+ G + G+ L
Sbjct: 204 -SQILAARAHNIEGG----GVAYAAHIGGFIAGLVL 234
>gi|373471259|ref|ZP_09562320.1| peptidase, S54 family [Lachnospiraceae bacterium oral taxon 082
str. F0431]
gi|371760666|gb|EHO49340.1| peptidase, S54 family [Lachnospiraceae bacterium oral taxon 082
str. F0431]
Length = 210
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 77/146 (52%), Gaps = 16/146 (10%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVS-W--L 191
+Y+ +T+ F H H+++N+ L + G +E+ G+F ++ Y+ +G AN S W
Sbjct: 55 YYRLITSMFMHFGIEHIANNMLILVLLGGKLEDIMGHFKFFIIYMLSGILANLASDWAQT 114
Query: 192 ILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSG 251
+ AVS GASGA+FG+ ++L + KI + L L Q VV S G+
Sbjct: 115 MTGDFAVSAGASGAIFGVVG-ALLASLVLSKGKI-KNLSLYQIVV---------SLGL-- 161
Query: 252 TFIGGYSVQSINHIAHLSGALFGVFL 277
G+ +++IAH+ GA+ GVF+
Sbjct: 162 MLYAGFKTTGVDNIAHVGGAVSGVFI 187
>gi|339629315|ref|YP_004720958.1| S54 family peptidase [Sulfobacillus acidophilus TPY]
gi|379006560|ref|YP_005256011.1| rhomboid family protein [Sulfobacillus acidophilus DSM 10332]
gi|339287104|gb|AEJ41215.1| S54 family peptidase [Sulfobacillus acidophilus TPY]
gi|361052822|gb|AEW04339.1| Rhomboid family protein [Sulfobacillus acidophilus DSM 10332]
Length = 193
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 13/132 (9%)
Query: 102 FWIILLNLGLYVA-----DHVFQVRSIKSLYLYH-------NFPAWYQFVTAAFCHANWN 149
FW+ L + + VA +H +Q +I + L + +W + + F H +W
Sbjct: 7 FWMTWLIIAVTVAVFLFVEHGYQPGAITAAKLAQWGGVVGWPYTSWRSLIFSTFLHVSWV 66
Query: 150 HLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGL 209
H+ SN+ LY+ G VE G + + Y+ GAAAN + + P N V+VGASGA+F L
Sbjct: 67 HIGSNMVSLYVIGPWVELALGPWEYLVFYLLGGAAANLTTAWLQPANVVAVGASGAIFAL 126
Query: 210 FAISVLVKMSWD 221
+ V+ +W
Sbjct: 127 IG-YLAVRWTWG 137
>gi|254424935|ref|ZP_05038653.1| peptidase, S54 (rhomboid) family, putative [Synechococcus sp. PCC
7335]
gi|196192424|gb|EDX87388.1| peptidase, S54 (rhomboid) family, putative [Synechococcus sp. PCC
7335]
Length = 248
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 76/165 (46%), Gaps = 25/165 (15%)
Query: 129 YHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFV 188
Y + W ++A F HA + H+ N+ +L+IFG VE++ G+ Y+ G A+
Sbjct: 63 YPHVSEWGTLLSAEFLHAGFFHVGGNMLYLWIFGNNVEDQLGHLKFLCFYLVCGVLASLC 122
Query: 189 SWLILPKNAV-SVGASGAVFGLFA----------ISVLVKMSWDWRKILEVLILGQFVVE 237
W + P++ V S+GASGA+ G+ + V + + ++ +L LG + VE
Sbjct: 123 QWYVAPESTVPSLGASGAIAGVMGAYIFRFPEVRVLTFVPIFFTAFRVPALLFLGFWFVE 182
Query: 238 KVME-----AAQASAGMSGTFIGGYSVQSINHIAHLSGALFGVFL 277
+ + A A GM G + + AH G +FG L
Sbjct: 183 QALYGFASLGASADVGMGG---------GVAYWAHAGGFVFGALL 218
>gi|385263597|ref|ZP_10041684.1| Rhomboid family protein [Bacillus sp. 5B6]
gi|385148093|gb|EIF12030.1| Rhomboid family protein [Bacillus sp. 5B6]
Length = 199
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 48/84 (57%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ VT F HAN+ HL N L++F +E+ G + YI +G N ++L P
Sbjct: 58 WWRLVTPMFLHANFTHLLFNSMSLFLFAPPLEQMLGKVRFLIVYIASGLIGNIGTYLAEP 117
Query: 195 KNAVSVGASGAVFGLFAISVLVKM 218
+ V VGASGA+FGLF + V + +
Sbjct: 118 LDYVHVGASGAIFGLFGVYVFLTV 141
>gi|302543949|ref|ZP_07296291.1| rhomboid family protein [Streptomyces hygroscopicus ATCC 53653]
gi|302461567|gb|EFL24660.1| rhomboid family protein [Streptomyces himastatinicus ATCC 53653]
Length = 292
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 60/99 (60%), Gaps = 2/99 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ +TAAF H H++ N+ L+ G +E G Y+ +G + +S+L+
Sbjct: 128 WYRLLTAAFLHQQPLHIAFNMLSLWWIGAPLEAALGRARYLTLYLLSGLGGSALSYLLAA 187
Query: 195 KNAVSVGASGAVFGLF-AISVLV-KMSWDWRKILEVLIL 231
+N S+GASGAVFGL A +VL+ ++++D R ++ +L+L
Sbjct: 188 QNQPSLGASGAVFGLLGATAVLMRRLNYDMRPVIALLVL 226
>gi|118579007|ref|YP_900257.1| rhomboid family protein [Pelobacter propionicus DSM 2379]
gi|118501717|gb|ABK98199.1| Rhomboid family protein [Pelobacter propionicus DSM 2379]
Length = 249
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 130 HNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVS 189
H AW T+ F H NW H+ SN+ FL++FG +E+ G + Y+ G AA V
Sbjct: 80 HPLLAWPTIFTSMFLHGNWLHIGSNMLFLWVFGDNIEDTLGRLRFSVFYLLCGLAAALVQ 139
Query: 190 WLILPKNAVS-VGASGAVFGLFAISVLV 216
L P + + VGASGAV G+ +L+
Sbjct: 140 ILSDPASTIPMVGASGAVAGVLGAYLLL 167
>gi|386347650|ref|YP_006045899.1| rhomboid family protein [Spirochaeta thermophila DSM 6578]
gi|339412617|gb|AEJ62182.1| Rhomboid family protein [Spirochaeta thermophila DSM 6578]
Length = 231
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 137 QFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKN 196
QF+TA F H W HL SN+ LYIFG VE+ G+ + Y+ +G AA+ V + P +
Sbjct: 63 QFLTAMFLHGGWAHLFSNMLALYIFGDNVEDRLGSGRYLIFYLLSGIAASVVHIALFPHS 122
Query: 197 AVS-VGASGAVFGLFAISVLV 216
V VGASGA+ G+ A VL+
Sbjct: 123 TVPMVGASGAISGVLAAYVLM 143
>gi|427731898|ref|YP_007078135.1| hypothetical protein Nos7524_4800 [Nostoc sp. PCC 7524]
gi|427367817|gb|AFY50538.1| putative membrane protein [Nostoc sp. PCC 7524]
Length = 223
Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 22/159 (13%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W T+ F H W HL SN+ FL++FG +EE G+ L Y+ GA A W I
Sbjct: 61 WTTLFTSQFLHGGWWHLISNMVFLWVFGNNIEERLGHLKYLLFYLGCGALAALCQWFIGM 120
Query: 195 KNAV-SVGASGAVFGLFA----------ISVLVKMSW--DWRKILEVLILGQFVVEKV-- 239
+ + S+GASGA+ G+ ++ LV + + I ++++G F ++ V
Sbjct: 121 SSTIPSLGASGAISGVLGAYIIRFPHARVTTLVFLGFFVTTINIPALVLIGIFFLQNVIS 180
Query: 240 -MEAAQASAGMSGTFIGGYSVQSINHIAHLSGALFGVFL 277
+ + QA+A MS + + AH+ G +FG+ L
Sbjct: 181 GLASLQAAANMS------VETGGVAYWAHIGGFVFGMIL 213
>gi|407985614|ref|ZP_11166204.1| rhomboid family protein [Mycobacterium hassiacum DSM 44199]
gi|407372772|gb|EKF21798.1| rhomboid family protein [Mycobacterium hassiacum DSM 44199]
Length = 221
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 57/99 (57%), Gaps = 2/99 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ +T+ F H HL N++ LY+ G +E G Y+ + + +L+ P
Sbjct: 103 WYRLLTSTFLHFGPVHLLFNMWALYVVGPPLESALGRLRFTALYLAGALGGSVLVYLLAP 162
Query: 195 KNAVSVGASGAVFGLFAISVLV--KMSWDWRKILEVLIL 231
NA + GASGAVFGLFA ++++ +++ D R +L ++++
Sbjct: 163 LNAATAGASGAVFGLFAATLVIGRRLNLDVRWVLALIVI 201
>gi|116492498|ref|YP_804233.1| membrane-associated serine protease [Pediococcus pentosaceus ATCC
25745]
gi|421894340|ref|ZP_16324829.1| rhomboid family protein [Pediococcus pentosaceus IE-3]
gi|116102648|gb|ABJ67791.1| Membrane-associated serine protease [Pediococcus pentosaceus ATCC
25745]
gi|385272644|emb|CCG90201.1| rhomboid family protein [Pediococcus pentosaceus IE-3]
Length = 229
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 77/148 (52%), Gaps = 14/148 (9%)
Query: 128 LYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANF 187
L N + T+ F H + H+ N+ LY G+L+E G++ L YIF+G AN
Sbjct: 54 LVQNGQGLWTIFTSMFIHIGFEHILFNMIALYFIGRLLERMIGHWKFVLIYIFSGLFANL 113
Query: 188 VSWLILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILG-QFVVEKVMEAAQAS 246
S + N++S GASGA+FG+ I V + M+ +R+ ++ +G Q ++ V+
Sbjct: 114 ASLALSNPNSISAGASGAIFGI--IGVWLMMAEQYREYPALIDMGKQMLLFSVLGLI--- 168
Query: 247 AGMSGTFIGGYSVQSINHIAHLSGALFG 274
+G+ GT ++N IAHL G + G
Sbjct: 169 SGLLGT--------NMNIIAHLGGLVSG 188
>gi|374340237|ref|YP_005096973.1| hypothetical protein Marpi_1272 [Marinitoga piezophila KA3]
gi|372101771|gb|AEX85675.1| putative membrane protein [Marinitoga piezophila KA3]
Length = 235
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 72/151 (47%), Gaps = 15/151 (9%)
Query: 124 KSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGA 183
K + +YH +++F+TA F H H+S NL+ LY G +VE G + Y+ +G
Sbjct: 53 KLITIYHQ---YFRFITALFVHGGILHISFNLYALYYLGNIVERVYGPYKFLTIYLASGI 109
Query: 184 AANFVSWLILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAA 243
++ + +P NA SVGASGA+FGL + D +L + + A
Sbjct: 110 GGGILTQIFIP-NAFSVGASGAIFGLIGLLFGAGFRDDTPPML----------KPMTGTA 158
Query: 244 QASAGMSGTFIGGYSVQSINHIAHLSGALFG 274
+ F+ G++ IN+ AH+ G L G
Sbjct: 159 LLPVILINLFL-GFTSSGINNFAHIGGLLVG 188
>gi|282882140|ref|ZP_06290781.1| rhomboid family integral membrane protein [Peptoniphilus lacrimalis
315-B]
gi|281298170|gb|EFA90625.1| rhomboid family integral membrane protein [Peptoniphilus lacrimalis
315-B]
Length = 237
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 64/127 (50%), Gaps = 2/127 (1%)
Query: 101 VFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYI 160
VF I+ L G D + + ++ + +Y W++ + F H + HL N++FLYI
Sbjct: 31 VFLIMTLCGGSQNIDVLVKFNAMNKILVYQG--QWWRLICPTFIHIGFAHLLMNMYFLYI 88
Query: 161 FGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFAISVLVKMSW 220
G + E G+ + YI G NFVS+ +S GAS +++GLF +++ + + +
Sbjct: 89 VGSIFENLYGSLRYLIIYIACGLMGNFVSYAFSNPYTISAGASTSLYGLFGLAIGLMIRY 148
Query: 221 DWRKILE 227
K+L
Sbjct: 149 KDDKVLS 155
>gi|374988154|ref|YP_004963649.1| hypothetical protein SBI_05398 [Streptomyces bingchenggensis BCW-1]
gi|297158806|gb|ADI08518.1| hypothetical protein SBI_05398 [Streptomyces bingchenggensis BCW-1]
Length = 295
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 58/99 (58%), Gaps = 2/99 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ VTA F H H++ N+ L+ G +E G Y+ G + +S+L+
Sbjct: 131 WYRLVTAMFLHQQAYHIAFNMLSLWWLGGPLEAALGRARYLAVYLLAGLGGSALSYLLAA 190
Query: 195 KNAVSVGASGAVFGLF-AISVLV-KMSWDWRKILEVLIL 231
+N S+GASGA+FGL A +VL+ ++++D R ++ +L+L
Sbjct: 191 QNQPSLGASGAIFGLLGATAVLMRRLNYDMRPVIALLVL 229
>gi|126438092|ref|YP_001073783.1| rhomboid family protein [Mycobacterium sp. JLS]
gi|126237892|gb|ABO01293.1| Rhomboid family protein [Mycobacterium sp. JLS]
Length = 289
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ T+AF H HL N++ LY+ G +E G Y + + + +L+ P
Sbjct: 115 WYRLATSAFLHYGAMHLLFNMWALYVVGPPLEMWLGRLRFGALYALSALGGSVLVYLLSP 174
Query: 195 KNAVSVGASGAVFGLFAISVLV--KMSWDWRKILEVLIL 231
NA + GASGAVFGLF +V K++ D R I ++IL
Sbjct: 175 INAATAGASGAVFGLFGAMFVVARKLNLDIRGIAAIIIL 213
>gi|108802111|ref|YP_642308.1| rhomboid-like protein [Mycobacterium sp. MCS]
gi|119871264|ref|YP_941216.1| rhomboid family protein [Mycobacterium sp. KMS]
gi|108772530|gb|ABG11252.1| Rhomboid-like protein [Mycobacterium sp. MCS]
gi|119697353|gb|ABL94426.1| Rhomboid family protein [Mycobacterium sp. KMS]
Length = 289
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ T+AF H HL N++ LY+ G +E G Y + + + +L+ P
Sbjct: 115 WYRLATSAFLHYGAMHLLFNMWALYVVGPPLEMWLGRLRFGALYALSALGGSVLVYLLSP 174
Query: 195 KNAVSVGASGAVFGLFAISVLV--KMSWDWRKILEVLIL 231
NA + GASGAVFGLF +V K++ D R I ++IL
Sbjct: 175 INAATAGASGAVFGLFGAMFVVARKLNLDIRGIAAIIIL 213
>gi|403046456|ref|ZP_10901925.1| hypothetical protein SOJ_15340 [Staphylococcus sp. OJ82]
gi|402763152|gb|EJX17245.1| hypothetical protein SOJ_15340 [Staphylococcus sp. OJ82]
Length = 485
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/143 (32%), Positives = 77/143 (53%), Gaps = 15/143 (10%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ +++ F H ++ H+ N+ L+IFGK+VE G++ + + YI G NF S L
Sbjct: 201 WYRLISSIFLHYDFEHILMNMLSLFIFGKIVESIVGHWRMIVIYIVAGLFGNFAS-LSFN 259
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFI 254
+ VS GASGA+FGL I + + ++ LI GQ ++ V+ G+S
Sbjct: 260 IDTVSAGASGAIFGL--IGAIFGFMYVGKQFNRKLI-GQLLIVLVI-----MIGLS---- 307
Query: 255 GGYSVQSINHIAHLSGALFGVFL 277
+Q+IN +AH+ G + G+ +
Sbjct: 308 --LFMQNINIVAHIGGFVGGLLI 328
>gi|325107091|ref|YP_004268159.1| rhomboid family protein [Planctomyces brasiliensis DSM 5305]
gi|324967359|gb|ADY58137.1| Rhomboid family protein [Planctomyces brasiliensis DSM 5305]
Length = 261
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 138 FVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNA 197
F+T F H W HL N+ FLYIFG VE+ G+ G Y+ G A W +P +
Sbjct: 92 FITCMFLHGGWMHLLGNMLFLYIFGDNVEDCFGHLGYLGFYLLAGILAGVAHWASMPDSM 151
Query: 198 V-SVGASGAVFGLFA 211
+ +VGASGA+ G+
Sbjct: 152 IPTVGASGAIAGVMG 166
>gi|255264303|ref|ZP_05343645.1| rhomboid family protein [Thalassiobium sp. R2A62]
gi|255106638|gb|EET49312.1| rhomboid family protein [Thalassiobium sp. R2A62]
Length = 246
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 137 QFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKN 196
VT+ F H + HL+ N+ FL+IFG +E+E G+ G + Y+F G AN L P +
Sbjct: 63 SLVTSTFLHGGFMHLAGNMLFLWIFGDNLEDELGHVGFLIFYLFCGILANVAQILPDPSS 122
Query: 197 AV-SVGASGAVFGLFA 211
AV +VGASGA+ G+
Sbjct: 123 AVPTVGASGAIAGIMG 138
>gi|163938239|ref|YP_001643123.1| rhomboid family protein [Bacillus weihenstephanensis KBAB4]
gi|423514497|ref|ZP_17491004.1| hypothetical protein IG3_05970 [Bacillus cereus HuA2-1]
gi|163860436|gb|ABY41495.1| Rhomboid family protein [Bacillus weihenstephanensis KBAB4]
gi|402442072|gb|EJV74014.1| hypothetical protein IG3_05970 [Bacillus cereus HuA2-1]
Length = 182
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 63/129 (48%), Gaps = 8/129 (6%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T+ H + H SN L++FG +E++ G+F + + +G N S++I+P
Sbjct: 47 WWRVITSLLVHVDLQHFLSNSICLFVFGSSIEKQLGHFSFIIIFFLSGILGNISSYIIMP 106
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWRK-------ILEVLILGQFVVEKVMEAAQASA 247
+ GASG +FGL + + S +R I ++IL + +A +
Sbjct: 107 LEYIHAGASGGIFGLLGAQLFLLYS-RYRSSKPRDIAIFSIMILILLLFTFFNPSANPIS 165
Query: 248 GMSGTFIGG 256
++G IGG
Sbjct: 166 HLTGLIIGG 174
>gi|333025703|ref|ZP_08453767.1| putative rhomboid family protein [Streptomyces sp. Tu6071]
gi|332745555|gb|EGJ75996.1| putative rhomboid family protein [Streptomyces sp. Tu6071]
Length = 341
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 60/122 (49%), Gaps = 12/122 (9%)
Query: 112 YVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGN 171
Y ADH+ V + WY+ +TAAF H H++ N+ L+ G +E G
Sbjct: 165 YGADHLVGVAEGE----------WYRLLTAAFLHQEIWHIAVNMLSLWFLGPAIESMLGR 214
Query: 172 FGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLF-AISVLV-KMSWDWRKILEVL 229
Y+ + S+L NA S+GASGA+FGLF A +LV ++ D R + +L
Sbjct: 215 ARFLALYLIAAVGGSVASYLFAAPNAASLGASGAIFGLFGATGILVLRVRADVRPFVALL 274
Query: 230 IL 231
++
Sbjct: 275 VI 276
>gi|423421597|ref|ZP_17398686.1| hypothetical protein IE3_05069 [Bacillus cereus BAG3X2-1]
gi|401097259|gb|EJQ05287.1| hypothetical protein IE3_05069 [Bacillus cereus BAG3X2-1]
Length = 190
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 44/77 (57%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T+ F H + H SN L++ G +E++ G+F + + +G N S++I+P
Sbjct: 47 WWRVITSLFVHVDLQHFLSNSICLFVLGSSIEKQLGHFSFIIIFFLSGIIGNISSYIIMP 106
Query: 195 KNAVSVGASGAVFGLFA 211
+ + GASG +FGL
Sbjct: 107 LDYIHAGASGGIFGLLG 123
>gi|255282943|ref|ZP_05347498.1| putative small hydrophobic molecule transporter protein [Bryantella
formatexigens DSM 14469]
gi|255266482|gb|EET59687.1| peptidase, S54 family [Marvinbryantia formatexigens DSM 14469]
Length = 205
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 67/144 (46%), Gaps = 14/144 (9%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLI-L 193
+Y+ T F H W HL N+ L+ G ++EE G + Y+ G A N +S+L +
Sbjct: 60 YYRLFTCMFLHFGWQHLFYNMLLLWFAGDMLEERSGPVRYLVIYLAGGVAGNVLSFLTGM 119
Query: 194 PKNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTF 253
+ VS GASGAVF + I LV + R +E + + V+ AQ
Sbjct: 120 ERQVVSAGASGAVFAV--IGALVWLVVKNRGKVEGIDNRGLCMMAVLSLAQ--------- 168
Query: 254 IGGYSVQSINHIAHLSGALFGVFL 277
G+ ++H+AHL G + G L
Sbjct: 169 --GFMDAGVDHMAHLGGFIGGFLL 190
>gi|423393314|ref|ZP_17370540.1| hypothetical protein ICG_05162 [Bacillus cereus BAG1X1-3]
gi|401630233|gb|EJS48040.1| hypothetical protein ICG_05162 [Bacillus cereus BAG1X1-3]
Length = 190
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 44/77 (57%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T+ F H + H SN L++ G +E++ G+F + + +G N S++I+P
Sbjct: 47 WWRVITSLFVHVDLQHFLSNSICLFVLGSSIEKQLGHFSFIIIFFLSGIIGNISSYIIMP 106
Query: 195 KNAVSVGASGAVFGLFA 211
+ + GASG +FGL
Sbjct: 107 LDYIHAGASGGIFGLLG 123
>gi|394994552|ref|ZP_10387265.1| YdcA, partial [Bacillus sp. 916]
gi|393804581|gb|EJD65987.1| YdcA, partial [Bacillus sp. 916]
Length = 184
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 48/84 (57%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ VT F HAN+ HL N L++F +E+ G + YI +G N ++L P
Sbjct: 58 WWRLVTPMFLHANFTHLLFNSMSLFLFAPPLEQMLGKVRFLVVYIASGIIGNIGTYLAEP 117
Query: 195 KNAVSVGASGAVFGLFAISVLVKM 218
+ V VGASGA+FGLF + V + +
Sbjct: 118 LDYVHVGASGAIFGLFGVYVFLTV 141
>gi|163815124|ref|ZP_02206505.1| hypothetical protein COPEUT_01280 [Coprococcus eutactus ATCC 27759]
gi|158449533|gb|EDP26528.1| peptidase, S54 family [Coprococcus eutactus ATCC 27759]
Length = 333
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 98/204 (48%), Gaps = 25/204 (12%)
Query: 85 LDKPE--ERRKPKKSVNGVFWII-----LLNLGLYVA-DHVFQVRSIK-SLYLYHNFPAW 135
+DK + R+ + ++ +F ++ L+N+ +Y+A +++Q + ++Y +
Sbjct: 125 IDKKTVVDNRRSQHNLMRMFGVVTPIFLLMNILVYLACVYIYQPTELAVNVYAISEKRQY 184
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
Y+F+T+ F H HL N+ L G +E G + YI TG AA F S++
Sbjct: 185 YRFLTSMFTHFGITHLLGNMVILIALGARIENIIGRLNYVIVYIVTGLAAAFASYINFFC 244
Query: 196 NAV---SVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGT 252
N + S GASGA+FGL + V++ R ++ L L ++ ++ T
Sbjct: 245 NDIYDYSAGASGAIFGLLGVLVVIAFYNKGR--VKDLSLMNMIILFIL-----------T 291
Query: 253 FIGGYSVQSINHIAHLSGALFGVF 276
+ G + I+++AH +G + G+
Sbjct: 292 LVDGLMSEGIDNVAHAAGFMAGIL 315
>gi|94312789|ref|YP_585998.1| intramembrane serine protease [Cupriavidus metallidurans CH34]
gi|93356641|gb|ABF10729.1| putative intramembrane serine protease [Cupriavidus metallidurans
CH34]
Length = 554
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 86/184 (46%), Gaps = 13/184 (7%)
Query: 97 SVNGVFWIILLNLG--LYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSN 154
+VN + W+I+L+ G L A + +L W++ +TA F H + HL++N
Sbjct: 201 AVNVLIWLIMLSRGAALDGAAPKMLIDWGGNLGALTQDGQWWRLLTATFLHGSLKHLAAN 260
Query: 155 LFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFAISV 214
+ LY+ G VE G L Y+ G + +S + +VSVGASGAVFG+
Sbjct: 261 MVVLYLLGTHVERFFGTRSFLLIYVGAGLLGSALSLYFAAQASVSVGASGAVFGIG--GA 318
Query: 215 LVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSG-TFIGGYSVQSINHIAHLSGALF 273
L+ + R+ L I + V + V+ M G + G+ +++ AH+ G +
Sbjct: 319 LLVAALLHRRELPQSIRNRLVSDAVI--------MIGYSLAQGFLSTRVDNAAHVGGLIG 370
Query: 274 GVFL 277
G L
Sbjct: 371 GALL 374
>gi|222099054|ref|YP_002533622.1| Rhomboid family protein precursor [Thermotoga neapolitana DSM 4359]
gi|221571444|gb|ACM22256.1| Rhomboid family protein precursor [Thermotoga neapolitana DSM 4359]
Length = 236
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +TA F H H+ N + LY FG +VE+ G+ SY FTG N ++ I
Sbjct: 55 WFRLITALFVHGGILHILFNSYALYYFGLIVEDIYGSEKFLFSYFFTGVVGN-IATHIFY 113
Query: 195 KNAVSVGASGAVFGLFAI 212
+ +SVGASGA+FGL +
Sbjct: 114 HDTISVGASGAIFGLIGV 131
>gi|318057482|ref|ZP_07976205.1| hypothetical protein SSA3_06048 [Streptomyces sp. SA3_actG]
Length = 341
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 60/122 (49%), Gaps = 12/122 (9%)
Query: 112 YVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGN 171
Y ADH+ V + WY+ +TAAF H H++ N+ L+ G +E G
Sbjct: 165 YGADHLVGVAEGE----------WYRLLTAAFLHQEIWHIAVNMLSLWFLGPAIESMLGR 214
Query: 172 FGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLF-AISVLV-KMSWDWRKILEVL 229
Y+ + S+L NA S+GASGA+FGLF A +LV ++ D R + +L
Sbjct: 215 ARFLALYLIAAVGGSVASYLFAAPNAASLGASGAIFGLFGATGILVLRVRADVRPFVALL 274
Query: 230 IL 231
++
Sbjct: 275 VI 276
>gi|291438500|ref|ZP_06577890.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
gi|291341395|gb|EFE68351.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
Length = 296
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 76/142 (53%), Gaps = 20/142 (14%)
Query: 107 LNLGLYVADHVFQVRS--IKSLYLYHNFPA-------------WYQFVTAAFCHANWNHL 151
+NL ++VA Q+R ++ LYL +P WY+ T+ F H H+
Sbjct: 92 INLAVFVA---VQIRPSLLRDLYLIGVWPPAPFLPTEGVADGEWYRLFTSMFTHEAIWHI 148
Query: 152 SSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLF- 210
+ N+ L+ G +E+ G Y+ +G A + +++L+ ++GASGA+FGLF
Sbjct: 149 AFNMLGLWWLGGPLEQALGRARYLALYLISGLAGSALTYLLASGTTATLGASGAIFGLFG 208
Query: 211 AISVLV-KMSWDWRKILEVLIL 231
A++VL+ ++ +D R I+ +L++
Sbjct: 209 AMAVLMRRLDYDMRPIIALLVI 230
>gi|225572886|ref|ZP_03781641.1| hypothetical protein RUMHYD_01077 [Blautia hydrogenotrophica DSM
10507]
gi|225039751|gb|EEG49997.1| peptidase, S54 family [Blautia hydrogenotrophica DSM 10507]
Length = 222
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 98/208 (47%), Gaps = 29/208 (13%)
Query: 80 ISQLELDKPEERRKPKKSVNGVFWIILLNLGLYV----------ADHVFQVRSIKSLYLY 129
+ +L + RK K S+N +I+LN+ +++ +H+ + + + +
Sbjct: 10 VRELRQEDFMRERKKKFSIN--IAMIVLNVVVFLIVDLSGNSGNTEHMLRCGAANAALIV 67
Query: 130 HNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVS 189
+Y+ T+ F H HL++N+ LY+ G +E G L Y+F+G N +S
Sbjct: 68 EA-KEYYRLFTSMFLHFGMAHLANNMLVLYVIGDNLERAVGKVKYLLIYLFSGLGGNILS 126
Query: 190 -WLILPKNAVSV--GASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQAS 246
+L + A+SV GASGA+FG+ + V ++ R LE L Q V+
Sbjct: 127 CYLEYQEGALSVSAGASGAIFGVMGAMLYVLLANHGR--LEDLTARQIVI---------M 175
Query: 247 AGMSGTFIGGYSVQSINHIAHLSGALFG 274
AG S F G++ +++ AH+ G + G
Sbjct: 176 AGFSLYF--GFTSSGVDNAAHVGGLICG 201
>gi|334116826|ref|ZP_08490918.1| Peptidase S54, rhomboid domain-containing protein [Microcoleus
vaginatus FGP-2]
gi|333461646|gb|EGK90251.1| Peptidase S54, rhomboid domain-containing protein [Microcoleus
vaginatus FGP-2]
Length = 234
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 58/104 (55%), Gaps = 4/104 (3%)
Query: 132 FPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWL 191
FP W +++ F HA + H++ N+ FL+IFG VE+ G+ + Y+ +G A+ W
Sbjct: 66 FPEWTTLISSQFLHAGFLHIAGNMLFLWIFGNNVEDRLGHVKFIIFYLTSGVLASLTQWF 125
Query: 192 ILPKNAV-SVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQF 234
+A+ S+GASGA+ G+ +L + ++L +L LG F
Sbjct: 126 FSSASAIPSLGASGAIAGVMGAYIL---RYPQARVLTLLPLGIF 166
>gi|57640721|ref|YP_183199.1| integral membrane protein rhomboid-like protein [Thermococcus
kodakarensis KOD1]
gi|57159045|dbj|BAD84975.1| integral membrane protein Rhomboid homolog [Thermococcus
kodakarensis KOD1]
Length = 206
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 83/186 (44%), Gaps = 30/186 (16%)
Query: 102 FWIILLNLGLYVADHVFQVRSIKSL------------YLYHNFPAWYQFVTAAFCHANWN 149
F + L+N+ +YV + V + S+ Y N+ W+Q TA F H N
Sbjct: 15 FTLFLINVAVYVVEAVLSGGNFLSIRGSVLALLGQWNYAVLNYGYWWQLFTAMFVHVNII 74
Query: 150 HLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGL 209
H+ N++FL G+ +E G + ++YI +G N ++ + P VS GASGA+FG
Sbjct: 75 HIFFNMYFLLTMGRQLERVLGPRRVVMTYIVSGLVGNVLTLFLKPPMTVSAGASGALFG- 133
Query: 210 FAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQSINHIAHLS 269
I+ LI VV M+AA +A F+ + +N AHL
Sbjct: 134 ---------------IVGALITISGVVGGNMQAAMMNAFF--LFLINSVLPGVNAYAHLG 176
Query: 270 GALFGV 275
G L G+
Sbjct: 177 GLLAGI 182
>gi|423596872|ref|ZP_17572897.1| hypothetical protein IIG_05734 [Bacillus cereus VD048]
gi|423602237|ref|ZP_17578237.1| hypothetical protein III_05039 [Bacillus cereus VD078]
gi|423672513|ref|ZP_17647452.1| hypothetical protein IKS_00056 [Bacillus cereus VDM062]
gi|401218537|gb|EJR25214.1| hypothetical protein IIG_05734 [Bacillus cereus VD048]
gi|401226138|gb|EJR32679.1| hypothetical protein III_05039 [Bacillus cereus VD078]
gi|401311619|gb|EJS16905.1| hypothetical protein IKS_00056 [Bacillus cereus VDM062]
Length = 190
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 63/129 (48%), Gaps = 8/129 (6%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T+ H + H SN L++FG +E++ G+F + + +G N S++I+P
Sbjct: 47 WWRVITSLLVHVDLQHFLSNSICLFVFGSSIEKQLGHFSFIIIFFLSGILGNISSYIIMP 106
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWRK-------ILEVLILGQFVVEKVMEAAQASA 247
+ GASG +FGL + + S +R I ++IL + +A +
Sbjct: 107 LEYIHAGASGGIFGLLGAQLFLLYS-RYRSSKPRDIAIFSIMILILLLFTFFNPSANPIS 165
Query: 248 GMSGTFIGG 256
++G IGG
Sbjct: 166 HLTGLIIGG 174
>gi|256395229|ref|YP_003116793.1| rhomboid family protein [Catenulispora acidiphila DSM 44928]
gi|256361455|gb|ACU74952.1| Rhomboid family protein [Catenulispora acidiphila DSM 44928]
Length = 252
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 75/158 (47%), Gaps = 21/158 (13%)
Query: 130 HNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFV- 188
H P W F TA F HA W HL N+ FLYIFG VE+ G YI GAA+ +
Sbjct: 57 HGNPVWPVF-TAMFVHAGWIHLLGNMLFLYIFGNNVEDVLGRLHFLAFYIIGGAASTYAF 115
Query: 189 SWLILPKNAVSVGASGAVFGLFA----------ISVLVKMSWDW-RKILEVLILGQFVVE 237
+W VGASGA+ + +++LV W ++ L+LG + V
Sbjct: 116 AWANPTATGPLVGASGAIAAVLGAYVYLFPQARVTLLVPFLWFLPMRVPAWLVLGFWFVV 175
Query: 238 KVMEAAQASAGMSGTFIGGYSVQSINHIAHLSGALFGV 275
++ E Q + G++G+ + + AH+SG + G+
Sbjct: 176 QLPE-FQQTIGVAGS-------TDVAYFAHVSGFVLGL 205
>gi|403669619|ref|ZP_10934810.1| hypothetical protein KJC8E_12316 [Kurthia sp. JC8E]
Length = 206
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 45/77 (58%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+++ VTA F H + H+ SN+F+LY+FG +E G + Y+ G N +++ P
Sbjct: 57 YWRVVTAIFIHGGFMHVLSNMFWLYVFGPELERIAGKARFFTIYMLAGILGNVFTYIWQP 116
Query: 195 KNAVSVGASGAVFGLFA 211
N SVGASGA+FG+
Sbjct: 117 LNYASVGASGAIFGILG 133
>gi|423370476|ref|ZP_17347883.1| hypothetical protein IC3_05552 [Bacillus cereus VD142]
gi|401073947|gb|EJP82356.1| hypothetical protein IC3_05552 [Bacillus cereus VD142]
Length = 182
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 63/129 (48%), Gaps = 8/129 (6%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T+ H + H SN L++FG +E++ G+F + + +G N S++I+P
Sbjct: 47 WWRVITSLLVHVDLQHFLSNSICLFVFGSSIEKQLGHFPFIIIFFLSGILGNISSYIIMP 106
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWRK-------ILEVLILGQFVVEKVMEAAQASA 247
+ GASG +FGL + + S +R I ++IL + +A +
Sbjct: 107 LEYIHAGASGGIFGLLGAQLFLLYS-RYRSSKPRDIAIFSIMILILLLFTFFNPSANPIS 165
Query: 248 GMSGTFIGG 256
++G IGG
Sbjct: 166 HLTGLIIGG 174
>gi|149183248|ref|ZP_01861692.1| YdcA [Bacillus sp. SG-1]
gi|148849044|gb|EDL63250.1| YdcA [Bacillus sp. SG-1]
Length = 212
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 68/135 (50%), Gaps = 8/135 (5%)
Query: 125 SLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAA 184
+LY+++ W++ +T F H + HL N F L +F +E G F + Y+ G A
Sbjct: 61 NLYIFNG--EWWRLITPIFVHLGFAHLLFNSFSLILFAPPLERMLGKFKFTIIYLTCGIA 118
Query: 185 ANFVSWLILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILEV----LILGQFVVEKVM 240
AN ++ + P VGASGA+FGLF I V M+ + ++ +I+ V+ VM
Sbjct: 119 ANIATYFLKPLTYNHVGASGAIFGLFGIY--VGMTLFHKHLISTQNKQVIIPIVVIGLVM 176
Query: 241 EAAQASAGMSGTFIG 255
QA+ ++ +G
Sbjct: 177 TFFQANINITAHLVG 191
>gi|315652544|ref|ZP_07905527.1| rhomboid family protein [Lachnoanaerobaculum saburreum DSM 3986]
gi|419718196|ref|ZP_14245528.1| peptidase, S54 family [Lachnoanaerobaculum saburreum F0468]
gi|315485201|gb|EFU75600.1| rhomboid family protein [Lachnoanaerobaculum saburreum DSM 3986]
gi|383305641|gb|EIC96994.1| peptidase, S54 family [Lachnoanaerobaculum saburreum F0468]
Length = 205
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 71/146 (48%), Gaps = 16/146 (10%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWL--- 191
+Y+ T+ F H H+ +N+ L + G +E+ G+F ++ Y+ +G AN S L
Sbjct: 55 YYRLATSMFMHFGIEHIVNNMLILVLLGGKLEDIMGHFKFFIIYMLSGILANIASDLAQT 114
Query: 192 ILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSG 251
+ AVS GASGA+FG+ ++L + KI K + Q + +
Sbjct: 115 MTGDFAVSAGASGAIFGVVG-ALLASLVLSKGKI------------KNLNLYQIAVSLGL 161
Query: 252 TFIGGYSVQSINHIAHLSGALFGVFL 277
G+ +++IAH+ GA+ GVF+
Sbjct: 162 MLYAGFKTTGVDNIAHVGGAVSGVFI 187
>gi|433650924|ref|YP_007295926.1| putative membrane protein [Mycobacterium smegmatis JS623]
gi|433300701|gb|AGB26521.1| putative membrane protein [Mycobacterium smegmatis JS623]
Length = 287
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 45/82 (54%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ VT+AF H HL N++ LYI G +E G Y + + + +L+ P
Sbjct: 113 WYRLVTSAFLHYGIAHLLFNMYALYIMGPSLESWLGRLRFSALYAMSALGGSVLVYLLSP 172
Query: 195 KNAVSVGASGAVFGLFAISVLV 216
NA + GASGAVFGLF + ++
Sbjct: 173 LNAATAGASGAVFGLFGAAFVI 194
>gi|300814558|ref|ZP_07094812.1| peptidase, S54 (rhomboid) family protein [Peptoniphilus sp. oral
taxon 836 str. F0141]
gi|300511326|gb|EFK38572.1| peptidase, S54 (rhomboid) family protein [Peptoniphilus sp. oral
taxon 836 str. F0141]
Length = 237
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 64/127 (50%), Gaps = 2/127 (1%)
Query: 101 VFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYI 160
VF I+ L G D + + ++ + +Y W++ + F H + HL N++FLYI
Sbjct: 31 VFLIMTLCGGSQNIDVLVKFNAMNKILVYQG--QWWRLICPIFIHIGFAHLLMNMYFLYI 88
Query: 161 FGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFAISVLVKMSW 220
G + E G+ + YI G NFVS+ +S GAS +++GLF +++ + + +
Sbjct: 89 VGSIFENLYGSLRYLIIYIACGLMGNFVSYAFSNPYTISAGASTSLYGLFGLAIGLMIRY 148
Query: 221 DWRKILE 227
K+L
Sbjct: 149 KDDKVLS 155
>gi|385809854|ref|YP_005846250.1| hypothetical protein IALB_1272 [Ignavibacterium album JCM 16511]
gi|383801902|gb|AFH48982.1| Hypothetical protein IALB_1272 [Ignavibacterium album JCM 16511]
Length = 267
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 76/155 (49%), Gaps = 27/155 (17%)
Query: 131 NFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAAN---- 186
NF W Q +T F H + H+ N+F L++FG VE G+ + Y+F+G A
Sbjct: 31 NFQVW-QLITYQFMHGGFGHIFFNMFALWMFGAEVEYILGSKKFLIFYLFSGITAGLLHL 89
Query: 187 FVSWLILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLI-------LGQFVVEKV 239
F+S L+ AV++GASGAVFG+ ++ + D L LI +G +V +
Sbjct: 90 FISPLLGSPLAVTIGASGAVFGV--MTAFAMLFPDRYIFLYFLIPVKAKYLIGFLIVFEF 147
Query: 240 MEAAQASAGMSGTFIGGYSVQSINHIAHLSGALFG 274
+ A++ ++ H+AHL GALFG
Sbjct: 148 LAIDSAAS-------------NVAHLAHLGGALFG 169
>gi|302552712|ref|ZP_07305054.1| rhomboid family protein [Streptomyces viridochromogenes DSM 40736]
gi|302470330|gb|EFL33423.1| rhomboid family protein [Streptomyces viridochromogenes DSM 40736]
Length = 296
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 59/99 (59%), Gaps = 2/99 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ VT+ F H H++ N+ L+ G +E G Y+ +G A + +++L+
Sbjct: 132 WYRMVTSMFTHQEIWHIAFNMLSLWWLGGPLEAALGRVRYLALYLVSGLAGSALAYLLAS 191
Query: 195 KNAVSVGASGAVFGLF-AISVLV-KMSWDWRKILEVLIL 231
N ++GASGA+FGLF A +VL+ ++++D R I+ +L +
Sbjct: 192 PNTATLGASGAIFGLFGATAVLMRRLNYDMRPIIALLAI 230
>gi|307719555|ref|YP_003875087.1| rhomboid family protein [Spirochaeta thermophila DSM 6192]
gi|306533280|gb|ADN02814.1| rhomboid family protein [Spirochaeta thermophila DSM 6192]
Length = 231
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 137 QFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKN 196
QF+TA F H W HL SN+ LYIFG VE+ G+ Y+ +G AA+ + P +
Sbjct: 63 QFITAMFLHGGWAHLFSNMLALYIFGDNVEDRLGSVRYLAFYLLSGIAASVTHIALFPDS 122
Query: 197 AVS-VGASGAVFGLFAISVLV 216
V VGASGA+ G+ A VL+
Sbjct: 123 PVPMVGASGAISGVLAAYVLM 143
>gi|434407761|ref|YP_007150646.1| putative membrane protein [Cylindrospermum stagnale PCC 7417]
gi|428262016|gb|AFZ27966.1| putative membrane protein [Cylindrospermum stagnale PCC 7417]
Length = 239
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 90/202 (44%), Gaps = 25/202 (12%)
Query: 90 ERRKPKKSVNGVFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWN 149
E P +++NG L+L V + S + + P W +T+ F H
Sbjct: 31 EASLPPQALNG-----FLHLAAVVPREL--TLSFAGISVNQPVPEWATLITSQFLHGGLL 83
Query: 150 HLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP-KNAVSVGASGAVFG 208
HL+ N+ FL+IFG VE++ G+F L Y+ G A+ W N S+GASGA+ G
Sbjct: 84 HLAGNMLFLWIFGNNVEDKLGHFKYLLFYLSCGILASLTQWYFAQGSNIPSLGASGAIAG 143
Query: 209 LFAISVLVKMSWDWRKILEVLILGQFVVEKVMEA---------AQASAGMSG----TFIG 255
+ +L + +IL V+ LG F + A QA G++G T IG
Sbjct: 144 VMGAYIL---RFPQAEILGVVPLGIFFPTFRVPAYFFLGFWFLQQAFYGVAGLEARTNIG 200
Query: 256 GYSVQSINHIAHLSGALFGVFL 277
S I + AH G +FG L
Sbjct: 201 MES-GGIAYWAHAGGFIFGAIL 221
>gi|423485537|ref|ZP_17462219.1| hypothetical protein IEU_00160 [Bacillus cereus BtB2-4]
gi|423491262|ref|ZP_17467906.1| hypothetical protein IEW_00160 [Bacillus cereus CER057]
gi|423501942|ref|ZP_17478559.1| hypothetical protein IEY_05169 [Bacillus cereus CER074]
gi|423665251|ref|ZP_17640390.1| hypothetical protein IKM_05667 [Bacillus cereus VDM022]
gi|401151506|gb|EJQ58955.1| hypothetical protein IEY_05169 [Bacillus cereus CER074]
gi|401161716|gb|EJQ69079.1| hypothetical protein IEW_00160 [Bacillus cereus CER057]
gi|401290575|gb|EJR96267.1| hypothetical protein IKM_05667 [Bacillus cereus VDM022]
gi|402441496|gb|EJV73451.1| hypothetical protein IEU_00160 [Bacillus cereus BtB2-4]
Length = 190
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 61/128 (47%), Gaps = 6/128 (4%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T+ H + H SN L++FG +E++ G+F + + +G N S++I+P
Sbjct: 47 WWRVITSLLVHVDLQHFLSNSICLFVFGSSIEKQLGHFSFIIIFFLSGILGNISSYIIMP 106
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWRK------ILEVLILGQFVVEKVMEAAQASAG 248
+ GASG +FGL + + S I ++IL + +A +
Sbjct: 107 LEYIHAGASGGIFGLLGAQLFLLYSRYCSSKPRDIAIFSIMILILLLFTFFNPSANPISH 166
Query: 249 MSGTFIGG 256
++G IGG
Sbjct: 167 LTGLIIGG 174
>gi|229009739|ref|ZP_04166962.1| Rhomboid [Bacillus mycoides DSM 2048]
gi|228751534|gb|EEM01337.1| Rhomboid [Bacillus mycoides DSM 2048]
Length = 182
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 61/128 (47%), Gaps = 6/128 (4%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T+ H + H SN L++FG +E++ G+F + + +G N S++I+P
Sbjct: 47 WWRVITSLLVHVDLQHFLSNSICLFVFGSSIEKQLGHFSFIIIFFLSGILGNISSYIIMP 106
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWRK------ILEVLILGQFVVEKVMEAAQASAG 248
+ GASG +FGL + + S I ++IL + +A +
Sbjct: 107 LEYIHAGASGGIFGLLGAQLFLLYSRYCSSKPRDIAIFSIMILILLLFTFFNPSANPISH 166
Query: 249 MSGTFIGG 256
++G IGG
Sbjct: 167 LTGLIIGG 174
>gi|269839327|ref|YP_003324019.1| rhomboid family protein [Thermobaculum terrenum ATCC BAA-798]
gi|269791057|gb|ACZ43197.1| Rhomboid family protein [Thermobaculum terrenum ATCC BAA-798]
Length = 230
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 97 SVNGVFWIILLNLGLY-VADHVFQVRSIKSLYLYHNFP-AWYQFVTAAFCHANWNHLSSN 154
+ N + W + L+LG + + V+++ + +L P W +T+ F H +W HL SN
Sbjct: 22 AANVLVWALELSLGTRGLEELVWRLGVVPERFLRSPLPFEWVTLLTSQFLHGSWFHLGSN 81
Query: 155 LFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAV-SVGASGAVFGLFA 211
+ LYIFG VE+ G+ L Y+ G A L+ +AV ++GASGA+ G+ A
Sbjct: 82 MIALYIFGDNVEDRLGHIKFLLFYLLCGVGAGVTHILLNSSSAVPAIGASGAISGVMA 139
>gi|428206644|ref|YP_007090997.1| rhomboid family protein [Chroococcidiopsis thermalis PCC 7203]
gi|428008565|gb|AFY87128.1| Rhomboid family protein [Chroococcidiopsis thermalis PCC 7203]
Length = 234
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 73/161 (45%), Gaps = 16/161 (9%)
Query: 130 HNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVS 189
P W +++ F H + H++ N+ FL+IFG VE+ G+ + Y+ G A
Sbjct: 67 QQLPEWMTLISSQFLHGGFLHIAGNMLFLWIFGNNVEDRLGHVKFLIFYLTCGVLAALSQ 126
Query: 190 WLILPKNAV-SVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEA------ 242
W P + + S+GASGA+ G+ +L + ++L ++ LG FV + A
Sbjct: 127 WFFSPNSTIPSLGASGAIAGVMGAYIL---RYPQARVLTLVFLGFFVTTLQIPAIFFLGL 183
Query: 243 ---AQASAGMSGTFIG---GYSVQSINHIAHLSGALFGVFL 277
QA G++ + G + + AH G +FG L
Sbjct: 184 WFVQQALYGIASLQVPSNIGMESGGVAYWAHAGGFVFGAIL 224
>gi|427734347|ref|YP_007053891.1| hypothetical protein Riv7116_0757 [Rivularia sp. PCC 7116]
gi|427369388|gb|AFY53344.1| putative membrane protein [Rivularia sp. PCC 7116]
Length = 232
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 133 PAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLI 192
P W T+ F H W HL SN+ FL++FG +E+ G+F + Y+ GA A W I
Sbjct: 67 PEWATLFTSQFLHGGWWHLISNMVFLWVFGNNIEDRLGHFKYIIFYLACGALAALCQWFI 126
Query: 193 LPKNAV-SVGASGAVFGLFA 211
+A+ S+GASGA+ G+
Sbjct: 127 GMNSAIPSLGASGAISGVLG 146
>gi|212550736|ref|YP_002309053.1| hypothetical protein CFPG_379 [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
gi|212548974|dbj|BAG83642.1| conserved hypothetical protein [Candidatus Azobacteroides
pseudotrichonymphae genomovar. CFP2]
Length = 198
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 85/182 (46%), Gaps = 18/182 (9%)
Query: 104 IILLNLGLYVADHVFQVRSIKSLYLYHNFPA----WYQFVTAAFCHANWNHLSSNLFFLY 159
++++N+ +++A H F + + H+F + YQ +T F H + HL N+F L+
Sbjct: 15 LLIINVSVWIACHYFG--GLADVLGLHHFQSKRFSLYQLITYMFTHETFQHLFFNMFALF 72
Query: 160 IFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLIL-----PKNAVSVGASGAVFG-LFAIS 213
+FG VE YI TG A V L+ P+ AV +GASGA+FG L A
Sbjct: 73 MFGGAVEMVWKQKRFLTYYIVTGIGAGLVQVLVFYIKISPQEAVMIGASGAIFGLLLAFG 132
Query: 214 VLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQSINHIAHLSGALF 273
+L + + + + + ++ V + GMS ++ H AHL G LF
Sbjct: 133 ILFPETLLYIMFIPIPVKAKYFVVGY-GLLEFFYGMSRN-----VSDNVAHFAHLGGMLF 186
Query: 274 GV 275
G+
Sbjct: 187 GI 188
>gi|414078562|ref|YP_006997880.1| rhomboid family protein [Anabaena sp. 90]
gi|413971978|gb|AFW96067.1| rhomboid family protein [Anabaena sp. 90]
Length = 219
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 77/156 (49%), Gaps = 22/156 (14%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W T+ F H W HL SN+ +L++FG +E+ G+F L Y+ GA A W I
Sbjct: 61 WTTLFTSQFLHGGWWHLISNMVYLWVFGNNIEDRLGHFKYLLFYLTCGAIAALCQWFIGM 120
Query: 195 KNAV-SVGASGAVFGLFA----------ISVLVKMSWDWRKI--LEVLILGQFVVEKVME 241
+AV S+GASGA+ G+ I+ L+ + + I ++I+G F V+ ++
Sbjct: 121 YSAVPSLGASGAISGVLGAYLIWFPQARITTLIFLGFFITTINVPALVIIGIFFVQNLIS 180
Query: 242 ---AAQASAGMSGTFIGGYSVQSINHIAHLSGALFG 274
+ QA+A MS + + + AHL G + G
Sbjct: 181 GFASLQAAANMS------VEMGGVAYWAHLGGFVVG 210
>gi|334339319|ref|YP_004544299.1| rhomboid family protein [Desulfotomaculum ruminis DSM 2154]
gi|334090673|gb|AEG59013.1| Rhomboid family protein [Desulfotomaculum ruminis DSM 2154]
Length = 212
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 7/131 (5%)
Query: 86 DKPEERRKPKKSV-----NGVFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVT 140
D RR P +V N + WI ++LG Y+ ++ + S ++ P +T
Sbjct: 3 DDIPSRRFPIVTVAIIFLNTLVWIYEVSLGPYMDHLIYAFGATPSELFHYTLPGQLFILT 62
Query: 141 AA-FCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVS 199
+A F H W H N+ +L++FG VE+ G F L Y+ TG A P + V
Sbjct: 63 SAMFLHGGWMHFLGNMLYLWVFGDNVEDRLGRFRFLLFYLLTGYIATLAHVWSDPASPVP 122
Query: 200 -VGASGAVFGL 209
+GASGA+ G+
Sbjct: 123 LIGASGAIAGV 133
>gi|266621088|ref|ZP_06114023.1| rhomboid protease GluP [Clostridium hathewayi DSM 13479]
gi|288867244|gb|EFC99542.1| rhomboid protease GluP [Clostridium hathewayi DSM 13479]
Length = 206
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 71/146 (48%), Gaps = 16/146 (10%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLI-- 192
+Y+ +T+ F H +H+ +N+ L+I G +E G+ Y+ G AN VS ++
Sbjct: 56 YYRLITSVFMHFGISHIMNNMLILFILGDNLERALGHIKYLFFYLICGVGANIVSMIVNL 115
Query: 193 -LPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSG 251
+N VS GASGA+FG+ I L+ R LE L Q VV V
Sbjct: 116 GEYRNVVSAGASGAIFGV--IGGLLYAVIINRGRLEDLSTRQLVVMIVC----------- 162
Query: 252 TFIGGYSVQSINHIAHLSGALFGVFL 277
+ G++ +++ AH++G L G+ +
Sbjct: 163 SLYFGFTSTGVDNAAHIAGLLIGIVM 188
>gi|126725123|ref|ZP_01740966.1| rhomboid family protein [Rhodobacterales bacterium HTCC2150]
gi|126706287|gb|EBA05377.1| rhomboid family protein [Rhodobacteraceae bacterium HTCC2150]
Length = 215
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+Y T F H + HL+ N+ FL+IFG +E+E G+FG L YI G AA + P
Sbjct: 29 YYTLFTHMFMHGGFMHLAGNMLFLWIFGDNMEDEMGHFGFLLFYIMAGLAAGLAQYYTEP 88
Query: 195 KNAVS-VGASGAVFGLFAISVLV 216
+ V VGASGA+ G+ +L+
Sbjct: 89 YSNVPLVGASGAIAGVMGGYLLL 111
>gi|404492193|ref|YP_006716299.1| rhomboid-like membrane protein [Pelobacter carbinolicus DSM 2380]
gi|77544302|gb|ABA87864.1| rhomboid-related membrane protein [Pelobacter carbinolicus DSM
2380]
Length = 251
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 69/146 (47%), Gaps = 11/146 (7%)
Query: 110 GLYVADHVFQVRSIKSLYLY-HNF----PAWYQFVTAAFCHANWNHLSSNLFFLYIFGKL 164
GL V Q S L+++ + F P+ + F H W HL+ N+ FLYIFG
Sbjct: 59 GLVSPQDVLQQVSAYDLFVFRYGFRPAAPSVVSLFSCMFLHGGWMHLAGNMLFLYIFGNN 118
Query: 165 VEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVS-VGASGAVFGLFAISVLVKMSWDWR 223
VE G+ G L Y+ +G AA + +P + + VGASGA+ G+ L W R
Sbjct: 119 VEVRLGSLGYLLIYLVSGVAATLFFAVFVPGSQIPLVGASGAISGVLGCYFL----WFPR 174
Query: 224 KILEVLI-LGQFVVEKVMEAAQASAG 248
++ I L F++ VM A+ G
Sbjct: 175 NRVKTFIFLFPFLMTTVMLPARLVLG 200
>gi|254410490|ref|ZP_05024269.1| peptidase, S54 (rhomboid) family [Coleofasciculus chthonoplastes
PCC 7420]
gi|196182696|gb|EDX77681.1| peptidase, S54 (rhomboid) family [Coleofasciculus chthonoplastes
PCC 7420]
Length = 243
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 1/95 (1%)
Query: 122 SIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFT 181
S + ++ P +TA F HA + H+ N+ FL+IFG +EEE G F + Y+
Sbjct: 56 SFNGITVHQPIPEPLTLITAQFLHAGFTHVGFNMLFLWIFGNNIEEELGRFKFLIFYLTC 115
Query: 182 GAAANFVSWLILPKNAV-SVGASGAVFGLFAISVL 215
G A+ W ++ + S+GASGA+ G+ +L
Sbjct: 116 GVLASLTQWFFSAQSGIPSLGASGAIAGVMGAYIL 150
>gi|428316985|ref|YP_007114867.1| Peptidase S54, rhomboid domain protein [Oscillatoria nigro-viridis
PCC 7112]
gi|428240665|gb|AFZ06451.1| Peptidase S54, rhomboid domain protein [Oscillatoria nigro-viridis
PCC 7112]
Length = 234
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 57/104 (54%), Gaps = 4/104 (3%)
Query: 132 FPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWL 191
FP W +++ F HA + H++ N+ FL+IFG VE+ G+ + Y+ G A+ W
Sbjct: 66 FPEWTTLISSQFLHAGFLHIAGNMLFLWIFGNNVEDRLGHVKFIIFYLTCGVLASLTQWF 125
Query: 192 ILPKNAV-SVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQF 234
+A+ S+GASGA+ G+ +L + K++ +L LG F
Sbjct: 126 FSSASAIPSLGASGAIAGVMGAYIL---RYPQAKVVTLLPLGIF 166
>gi|332638068|ref|ZP_08416931.1| membrane-associated serine protease [Weissella cibaria KACC 11862]
Length = 233
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 64/130 (49%), Gaps = 8/130 (6%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +TA F H ++HL+ N+ LY G+L+E E G + + T + N +S
Sbjct: 60 WWRLITAGFLHVTFSHLAFNMITLYFIGRLLEIELGPWRFLALFFLTVISGNLMSLAFGG 119
Query: 195 KNAVSVGASGAVFGLFA----ISVLVKMSWDWR---KILEVLILGQFVVEKVMEAAQASA 247
N +S GASG +FGLF + +L K WR K++ + IL V SA
Sbjct: 120 VNVISAGASGGIFGLFGAIGMLGLLDKRRAYWRSQAKLMGIFILLSIVSSFATPDIDLSA 179
Query: 248 GMSGTFIGGY 257
+ G +GG+
Sbjct: 180 HIGG-LLGGF 188
>gi|254436954|ref|ZP_05050448.1| peptidase, S54 (rhomboid) family, putative [Octadecabacter
antarcticus 307]
gi|198252400|gb|EDY76714.1| peptidase, S54 (rhomboid) family, putative [Octadecabacter
antarcticus 307]
Length = 246
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 73/144 (50%), Gaps = 11/144 (7%)
Query: 138 FVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNA 197
F T F HA + HL+ N+ FL+IFG +EEE G+ YI +G AA ++ +L P +A
Sbjct: 64 FFTHMFLHAGFLHLAGNMLFLWIFGDNIEEEMGHLPFLGFYILSGFAAAYLQYLPNPLSA 123
Query: 198 VS-VGASGAVFGLFAISVLV--KMSWDWRKIL----EVLILGQFVVEKVMEAAQASAGMS 250
V VGASGA+ G+ +L+ K D L +L + F+V V A Q G+
Sbjct: 124 VPMVGASGAIAGVMGGYLLLFPKARVDVFIFLVVFFRILPIPSFIVLGVWMALQVFNGLG 183
Query: 251 GTFIGGYSVQSINHIAHLSGALFG 274
GG + + AH+ G + G
Sbjct: 184 SDLNGGGTA----YWAHVGGFIAG 203
>gi|187735290|ref|YP_001877402.1| rhomboid family protein [Akkermansia muciniphila ATCC BAA-835]
gi|187425342|gb|ACD04621.1| Rhomboid family protein [Akkermansia muciniphila ATCC BAA-835]
Length = 291
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 68/147 (46%), Gaps = 35/147 (23%)
Query: 95 KKSVNGVFWIILLNLGLYVADHVFQVRSIKSLY------------------LYHNFPAWY 136
++S V W+ILLN+ +++ FQV +++Y +H W
Sbjct: 19 QRSAVMVHWLILLNVVIFILGFFFQVDIPRNIYPPVHLDLIQLYGAYSEYTCFHEGELW- 77
Query: 137 QFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVS------- 189
+ +T F HAN H+ N+ L+ FG +VEE G++ L Y+F G AA S
Sbjct: 78 RLLTYQFLHANLGHIMFNMIALWFFGPVVEERFGHWRFLLYYLFCGVAAALFSSLLGYMG 137
Query: 190 -----WLILPKNAVSVGASGAVFGLFA 211
W +P VGASG+++G+ A
Sbjct: 138 FFDPEWRFIPM----VGASGSIYGIMA 160
>gi|423525847|ref|ZP_17502299.1| hypothetical protein IGC_05209 [Bacillus cereus HuA4-10]
gi|401165638|gb|EJQ72955.1| hypothetical protein IGC_05209 [Bacillus cereus HuA4-10]
Length = 190
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 62/129 (48%), Gaps = 8/129 (6%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T+ H + H SN L+I G +E++ G+F + + +G N S++I+P
Sbjct: 47 WWRVITSLLVHVDLQHFLSNSICLFILGSSIEKQLGHFSFIIIFFLSGILGNISSYIIMP 106
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWRK-------ILEVLILGQFVVEKVMEAAQASA 247
+ GASG +FGL + + S +R I ++IL + +A +
Sbjct: 107 LEYIHAGASGGIFGLLGAQLFLLYS-RYRSSKPRDIAIFSIMILILLLFTFFNPSANPIS 165
Query: 248 GMSGTFIGG 256
++G IGG
Sbjct: 166 HLTGLIIGG 174
>gi|239989111|ref|ZP_04709775.1| hypothetical protein SrosN1_17547 [Streptomyces roseosporus NRRL
11379]
gi|291446112|ref|ZP_06585502.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
gi|291349059|gb|EFE75963.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
Length = 300
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ VT+ F H H+ N+ L+ G +E G Y+ +G A + +++LI
Sbjct: 137 WYRLVTSMFLHQELMHIGFNMLGLWWLGGQLEAALGRSRYLALYLLSGFAGSALTYLIAA 196
Query: 195 KNAVSVGASGAVFGLFAISVLV--KMSWDWR 223
+N S+GASGAV+GLF + ++ +M++D R
Sbjct: 197 QNQPSLGASGAVYGLFGATAVLMRRMNYDMR 227
>gi|403385795|ref|ZP_10927852.1| hypothetical protein KJC30_13905 [Kurthia sp. JC30]
Length = 206
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 69/135 (51%), Gaps = 13/135 (9%)
Query: 86 DKPEERRKPKKSVNGVFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPA---------WY 136
++ E+ K V +IL+NL +YV V ++ S Y+++ A ++
Sbjct: 3 NRNEKLSDYIKLYPAVATLILINLIVYVIGLVPRINS----YIFNYGAAANWLIGAGEYW 58
Query: 137 QFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKN 196
+ VTA F H + H+ SN+F+LY+FG +E+ G ++ +G N ++ +
Sbjct: 59 RLVTAIFIHGGFLHILSNMFWLYVFGPELEKIAGRARFIFIFLMSGIIGNVATYFVQDLG 118
Query: 197 AVSVGASGAVFGLFA 211
VSVGASGAVFG+
Sbjct: 119 YVSVGASGAVFGMLG 133
>gi|427715374|ref|YP_007063368.1| Peptidase S54, rhomboid domain-containing protein [Calothrix sp.
PCC 7507]
gi|427347810|gb|AFY30534.1| Peptidase S54, rhomboid domain protein [Calothrix sp. PCC 7507]
Length = 224
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 84/177 (47%), Gaps = 23/177 (12%)
Query: 118 FQVRSIKSLYLYHNFPA-WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWL 176
F++ ++ L NF W T+ F H W HL SN+ FL++FG +E+ G+ +
Sbjct: 43 FKLYAVVPRELTTNFAGEWTTLFTSQFLHGGWWHLISNMLFLWVFGNNIEDRLGHVKYLI 102
Query: 177 SYIFTGAAANFVSWLILPKNAV-SVGASGAVFGLFA----------ISVLVKMSW--DWR 223
Y+ GA A W I + + S+GASGA+ G+ I LV + +
Sbjct: 103 FYLACGALAALCQWFIGMNSGIPSLGASGAISGVLGAYLIRFPQARIMSLVFLGFFVTTI 162
Query: 224 KILEVLILGQFVVEKV---MEAAQASAGMSGTFIGGYSVQSINHIAHLSGALFGVFL 277
+I ++++G F ++ V + + Q +A MS + + AH+ G +FG+ L
Sbjct: 163 RIPAMILIGIFFLQNVISGLASLQVAANMS------VETGGVAYWAHIGGFVFGIIL 213
>gi|452910770|ref|ZP_21959448.1| rhomboid family serine protease [Kocuria palustris PEL]
gi|452834191|gb|EME36994.1| rhomboid family serine protease [Kocuria palustris PEL]
Length = 268
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 80/170 (47%), Gaps = 28/170 (16%)
Query: 84 ELDKPEERR-KPKKSVNGV------------FWIIL-LNLGLYVADHVFQVRSIKSLYLY 129
+ PE R+ +P SV V W+++ +N +Y + + I L L
Sbjct: 52 QAGHPEARQARPAPSVPSVRQARRRGGAMTVTWVLIGINAAVYAVQWLLSLMGINPLVLL 111
Query: 130 HNFPAW-----YQFVTAAFCHA--NWNHLSSNLFFLYIFGKLVEEEEGN---FGLWLSYI 179
P + + +T+ F H+ N HL N++ L+IFG+++E E G ++L +
Sbjct: 112 GLAPGYVSQAPWTVITSGFSHSMSNPAHLLLNMYTLWIFGRMLEPEIGRGRFLTVYLLSL 171
Query: 180 FTGAAANFVSWLILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVL 229
GAAA L+ P +VGASGAVFGLF +VL W R+ E L
Sbjct: 172 LGGAAAVL---LLSPAYTFTVGASGAVFGLFG-AVLALALWGGRRYRENL 217
>gi|440705184|ref|ZP_20885986.1| peptidase, S54 family [Streptomyces turgidiscabies Car8]
gi|440273071|gb|ELP61867.1| peptidase, S54 family [Streptomyces turgidiscabies Car8]
Length = 298
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 59/99 (59%), Gaps = 2/99 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ +T+ F H + H+ N+ L+ G +E G Y+ +G A + +++L+
Sbjct: 135 WYRLLTSMFLHGSLMHIVFNMLSLWWLGGPLEAALGRARYLALYLVSGLAGSALTYLLEA 194
Query: 195 KNAVSVGASGAVFGLF-AISVLV-KMSWDWRKILEVLIL 231
S+GASGA+FGLF A +VL+ ++++D R I+ +L++
Sbjct: 195 PTTPSLGASGAIFGLFGATAVLMRRLNYDMRPIIALLVI 233
>gi|423456144|ref|ZP_17432997.1| hypothetical protein IEE_04888 [Bacillus cereus BAG5X1-1]
gi|423473256|ref|ZP_17449998.1| hypothetical protein IEM_04560 [Bacillus cereus BAG6O-2]
gi|401131810|gb|EJQ39459.1| hypothetical protein IEE_04888 [Bacillus cereus BAG5X1-1]
gi|402426408|gb|EJV58533.1| hypothetical protein IEM_04560 [Bacillus cereus BAG6O-2]
Length = 182
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 62/129 (48%), Gaps = 8/129 (6%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T+ H + H SN L+I G +E++ G+F + + +G N S++I+P
Sbjct: 47 WWRVITSLLVHVDLQHFLSNSICLFILGSSIEKQLGHFSFIIIFFLSGILGNISSYIIMP 106
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWRK-------ILEVLILGQFVVEKVMEAAQASA 247
+ GASG +FGL + + S +R I ++IL + +A +
Sbjct: 107 LEYIHAGASGGIFGLLGAQLFLLYS-RYRSSQPRDIAIFSIMILILLLFTFFNPSANPIS 165
Query: 248 GMSGTFIGG 256
++G IGG
Sbjct: 166 HLTGLIIGG 174
>gi|318080696|ref|ZP_07988028.1| hypothetical protein SSA3_29396 [Streptomyces sp. SA3_actF]
Length = 248
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 60/122 (49%), Gaps = 12/122 (9%)
Query: 112 YVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGN 171
Y ADH+ V + WY+ +TAAF H H++ N+ L+ G +E G
Sbjct: 72 YGADHLVGVAEGE----------WYRLLTAAFLHQEIWHIAVNMLSLWFLGPAIESMLGR 121
Query: 172 FGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLF-AISVLV-KMSWDWRKILEVL 229
Y+ + S+L NA S+GASGA+FGLF A +LV ++ D R + +L
Sbjct: 122 ARFLALYLIAAVGGSVASYLFAAPNAASLGASGAIFGLFGATGILVLRVRADVRPFVALL 181
Query: 230 IL 231
++
Sbjct: 182 VI 183
>gi|423577912|ref|ZP_17554031.1| hypothetical protein II9_05133 [Bacillus cereus MSX-D12]
gi|423607939|ref|ZP_17583832.1| hypothetical protein IIK_04520 [Bacillus cereus VD102]
gi|401203958|gb|EJR10789.1| hypothetical protein II9_05133 [Bacillus cereus MSX-D12]
gi|401239513|gb|EJR45940.1| hypothetical protein IIK_04520 [Bacillus cereus VD102]
Length = 190
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 42/77 (54%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T+ H + H SN L++ G +E++ G+F + + +G N S+LI+P
Sbjct: 47 WWRLITSLLVHVDLPHFLSNSICLFVLGSSIEKQLGHFSFIIIFFLSGILGNIFSYLIMP 106
Query: 195 KNAVSVGASGAVFGLFA 211
+ GASG +FGL
Sbjct: 107 HEYIHTGASGGIFGLLG 123
>gi|298492625|ref|YP_003722802.1| rhomboid family protein ['Nostoc azollae' 0708]
gi|298234543|gb|ADI65679.1| Rhomboid family protein ['Nostoc azollae' 0708]
Length = 232
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 55/101 (54%), Gaps = 4/101 (3%)
Query: 133 PAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLI 192
P W +TA F HA + HL+ N+ FL++FG +E++ G+F + Y+ G A+ W
Sbjct: 67 PEWATLITAQFLHAGFLHLAGNMLFLWVFGNNIEDKLGHFKYLVFYLSCGILASLTQWYF 126
Query: 193 LP-KNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILG 232
N S+GASGA+ G+ +L + +IL VL LG
Sbjct: 127 AQYSNLPSLGASGAIAGVMGAYIL---RFPEAEILTVLPLG 164
>gi|257065576|ref|YP_003151832.1| rhomboid family protein [Anaerococcus prevotii DSM 20548]
gi|256797456|gb|ACV28111.1| Rhomboid family protein [Anaerococcus prevotii DSM 20548]
Length = 225
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 53/95 (55%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +TAAF H + H+ N++FLY G L E G+ + YI G N ++
Sbjct: 54 WWRALTAAFIHIGFFHILFNMYFLYNIGPLFERLYGSINFLIIYILAGVLGNLFTYAFGG 113
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVL 229
N VS GAS +++G+F +++ + +++ +IL L
Sbjct: 114 ANTVSAGASTSLYGMFGLAIGLMINYKDDEILRGL 148
>gi|15643350|ref|NP_228394.1| hypothetical protein TM0584 [Thermotoga maritima MSB8]
gi|418045242|ref|ZP_12683338.1| Rhomboid family protein [Thermotoga maritima MSB8]
gi|4981102|gb|AAD35669.1|AE001733_6 conserved hypothetical protein [Thermotoga maritima MSB8]
gi|351678324|gb|EHA61471.1| Rhomboid family protein [Thermotoga maritima MSB8]
Length = 235
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +TA F H H+ N + LY FG +VE+ G + Y FTG N + +
Sbjct: 54 WFRLITALFVHGGILHILFNSYALYYFGLIVEDIYGTEKFLVGYFFTGIVGNLATH-VFY 112
Query: 195 KNAVSVGASGAVFGLFAI 212
+ +SVGASGA+FGL I
Sbjct: 113 HDTISVGASGAIFGLIGI 130
>gi|403252324|ref|ZP_10918634.1| Rhomboid family protein [Thermotoga sp. EMP]
gi|402812337|gb|EJX26816.1| Rhomboid family protein [Thermotoga sp. EMP]
Length = 235
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +TA F H H+ N + LY FG +VE+ G + Y FTG N + +
Sbjct: 54 WFRLITALFVHGGILHILFNSYALYYFGLIVEDIYGTEKFLVGYFFTGIVGNLATH-VFY 112
Query: 195 KNAVSVGASGAVFGLFAI 212
+ +SVGASGA+FGL I
Sbjct: 113 HDTISVGASGAIFGLIGI 130
>gi|298706194|emb|CBJ29235.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 256
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 124 KSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGA 183
K Y + WY+ VTA H W HL+ N L+ G+ E G Y+ +G
Sbjct: 106 KLAYAITDHGEWYRLVTAVMLHGGWGHLAGNSMALFNIGRGTETYMGTEKFVALYVCSGV 165
Query: 184 AANFVSWLILPKNAVSVGASGAVFGLFAISVLVKMS 219
+ N +S ++ P S+GASGA+FGL ++ ++
Sbjct: 166 SGNVLSCIVDPLTP-SLGASGAIFGLLGAEAMIHLA 200
>gi|428307749|ref|YP_007144574.1| Peptidase S54, rhomboid domain-containing protein [Crinalium
epipsammum PCC 9333]
gi|428249284|gb|AFZ15064.1| Peptidase S54, rhomboid domain protein [Crinalium epipsammum PCC
9333]
Length = 237
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 72/161 (44%), Gaps = 16/161 (9%)
Query: 130 HNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVS 189
+ P W VT+ F H + H++ NL FL+IFG +E+ G+ + YI G A
Sbjct: 64 QSVPEWLTLVTSQFLHGGFLHVAGNLLFLWIFGNNIEDRLGHIKYLIFYIACGVLAALTQ 123
Query: 190 WLILPKNAV-SVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEK---------- 238
W +++ S+GASGA+ G+ VL + K+L +L LG F+
Sbjct: 124 WYFSAGSSIPSLGASGAIAGVMGAYVL---KFPKAKVLTLLPLGFFITTVRVPAFFFLGF 180
Query: 239 --VMEAAQASAGMSGTFIGGYSVQSINHIAHLSGALFGVFL 277
+ +A +A + G I + AH G +FG L
Sbjct: 181 WFLQQAFYGAASLDAPANIGMESGGIAYWAHAGGFVFGAIL 221
>gi|423405049|ref|ZP_17382222.1| hypothetical protein ICW_05447 [Bacillus cereus BAG2X1-2]
gi|423479886|ref|ZP_17456600.1| hypothetical protein IEO_05343 [Bacillus cereus BAG6X1-1]
gi|401645692|gb|EJS63342.1| hypothetical protein ICW_05447 [Bacillus cereus BAG2X1-2]
gi|402424278|gb|EJV56464.1| hypothetical protein IEO_05343 [Bacillus cereus BAG6X1-1]
Length = 190
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 42/77 (54%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T+ H + H SN L++ G +E++ G+F + + +G N S+LI+P
Sbjct: 47 WWRLITSLLVHVDLQHFLSNSICLFVLGSSIEKQLGHFSFIIIFFLSGILGNISSYLIMP 106
Query: 195 KNAVSVGASGAVFGLFA 211
+ GASG +FGL
Sbjct: 107 LEYIHAGASGGIFGLLG 123
>gi|148269479|ref|YP_001243939.1| rhomboid family protein [Thermotoga petrophila RKU-1]
gi|170288153|ref|YP_001738391.1| rhomboid family protein [Thermotoga sp. RQ2]
gi|281411803|ref|YP_003345882.1| Rhomboid family protein [Thermotoga naphthophila RKU-10]
gi|147735023|gb|ABQ46363.1| Rhomboid family protein [Thermotoga petrophila RKU-1]
gi|170175656|gb|ACB08708.1| Rhomboid family protein [Thermotoga sp. RQ2]
gi|281372906|gb|ADA66468.1| Rhomboid family protein [Thermotoga naphthophila RKU-10]
Length = 235
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +TA F H H+ N + LY FG +VE+ G + Y FTG N + +
Sbjct: 54 WFRLITALFVHGGILHILFNSYALYYFGLIVEDIYGTEKFLVGYFFTGIVGNLATH-VFY 112
Query: 195 KNAVSVGASGAVFGLFAI 212
+ +SVGASGA+FGL I
Sbjct: 113 HDTISVGASGAIFGLIGI 130
>gi|398831080|ref|ZP_10589259.1| putative membrane protein [Phyllobacterium sp. YR531]
gi|398212648|gb|EJM99250.1| putative membrane protein [Phyllobacterium sp. YR531]
Length = 253
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 129 YHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFV 188
Y P ++T AF HA+ HL N+ FL++FG +E+ G+ + Y+ AA F+
Sbjct: 65 YDIVPPNLTYITYAFLHADIFHLGGNMLFLWVFGDNIEDALGHVKFLIFYLLCAAAGAFL 124
Query: 189 SWLILPKN-AVSVGASGAVFGLFAISVLV 216
+ILP + A +GASGA+ G+ A +L+
Sbjct: 125 HGVILPDSQAPLIGASGAIAGIVAAYLLL 153
>gi|400754042|ref|YP_006562410.1| rhomboid protein-like protein [Phaeobacter gallaeciensis 2.10]
gi|398653195|gb|AFO87165.1| rhomboid protein-like protein [Phaeobacter gallaeciensis 2.10]
Length = 258
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 55/105 (52%), Gaps = 9/105 (8%)
Query: 121 RSIKSLY-LYHNFPA-------WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNF 172
RS+ +LY Y PA W +T+ F H +W HL N+ FL+IFG +E+E G+F
Sbjct: 39 RSLTALYNAYALLPAEVTSGYDWKTLLTSTFLHGSWMHLGGNMLFLWIFGDNMEDEMGHF 98
Query: 173 GLWLSYIFTGAAANFVSWLILPKNAVS-VGASGAVFGLFAISVLV 216
Y+ +G A + P + V VGASGA+ G+ +L+
Sbjct: 99 TFLAFYLVSGIGAGLIHVASAPYSLVPLVGASGAIAGVMGGYLLL 143
>gi|52078997|ref|YP_077788.1| hypothetical protein BL02214 [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|319648699|ref|ZP_08002910.1| YdcA protein [Bacillus sp. BT1B_CT2]
gi|404487870|ref|YP_006711976.1| transmembrane protein YdcA [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|423680901|ref|ZP_17655740.1| hypothetical protein MUY_00712 [Bacillus licheniformis WX-02]
gi|52002208|gb|AAU22150.1| conserved membrane protein YdcA [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|52346871|gb|AAU39505.1| putative transmembrane protein YdcA [Bacillus licheniformis DSM 13
= ATCC 14580]
gi|317389118|gb|EFV69934.1| YdcA protein [Bacillus sp. BT1B_CT2]
gi|383442007|gb|EID49716.1| hypothetical protein MUY_00712 [Bacillus licheniformis WX-02]
Length = 199
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 71/141 (50%), Gaps = 13/141 (9%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++FVT F HA + HL N +++F +E G + YI G N ++ I P
Sbjct: 58 WWRFVTPIFIHAGFGHLLFNSMSIFLFAPGLERMLGKLKFLIVYIGAGVIGNIGTYFIEP 117
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFI 254
+ VGASGA+FGLF + + + + +RK L +G + ++ S M TF+
Sbjct: 118 LEYMHVGASGAIFGLFGVYLYIVL---FRKEL----MGSANSQIIVTILAISVLM--TFV 168
Query: 255 GGYSVQSINHIAHLSGALFGV 275
Q+IN +AH+ G L G+
Sbjct: 169 N----QNINMMAHIFGLLGGL 185
>gi|441142545|ref|ZP_20962413.1| hypothetical protein SRIM_00110 [Streptomyces rimosus subsp.
rimosus ATCC 10970]
gi|440622490|gb|ELQ85269.1| hypothetical protein SRIM_00110 [Streptomyces rimosus subsp.
rimosus ATCC 10970]
Length = 303
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 56/99 (56%), Gaps = 2/99 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ +TA F H H+ N+ L+ G +E G Y+ +G + +S+L+
Sbjct: 139 WYRLLTAVFLHQAPMHIIFNMLSLWWLGPPLEAAFGRVRFLALYLLSGLGGSALSYLLAA 198
Query: 195 KNAVSVGASGAVFGLFAISVLV--KMSWDWRKILEVLIL 231
+N S+GASGA+FGL +V++ ++++D R +L +L L
Sbjct: 199 QNQPSLGASGAIFGLLGATVILMRRLNYDMRPVLILLAL 237
>gi|268319881|ref|YP_003293537.1| hypothetical protein FI9785_1410 [Lactobacillus johnsonii FI9785]
gi|262398256|emb|CAX67270.1| conserved hypothetical protein [Lactobacillus johnsonii FI9785]
Length = 228
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 48/85 (56%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ TA F H W H++SN +Y G+ +E G++ Y+ +G N +S+ +
Sbjct: 58 WWRLFTAQFLHIGWLHIASNAVMIYYMGQFMEPLLGHWRFLTVYLLSGIGGNLLSYAYVS 117
Query: 195 KNAVSVGASGAVFGLFAISVLVKMS 219
+ VS GAS A+FGLF + + + ++
Sbjct: 118 DSVVSAGASTALFGLFGVVIALYLA 142
>gi|150020441|ref|YP_001305795.1| rhomboid family protein [Thermosipho melanesiensis BI429]
gi|149792962|gb|ABR30410.1| Rhomboid family protein [Thermosipho melanesiensis BI429]
Length = 223
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 62/141 (43%), Gaps = 11/141 (7%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ VTA F H + HL N++ LY G++VE G Y TG N +
Sbjct: 50 WYRIVTAMFVHGGFIHLVFNMYALYFLGRIVENVYGTDKFLFFYFSTGIIGNLATQFFY- 108
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFI 254
N+ SVGASGA+FGL + D + ++ + A + F+
Sbjct: 109 YNSFSVGASGAIFGLVGVLFAAGFRRD----------TPYTLKPITGTAFLPMILVNIFL 158
Query: 255 GGYSVQSINHIAHLSGALFGV 275
G +IN+ AHL G L G+
Sbjct: 159 GFIPGSNINNAAHLGGFLSGM 179
>gi|384178164|ref|YP_005563926.1| rhomboid family protein [Bacillus thuringiensis serovar finitimus
YBT-020]
gi|324324248|gb|ADY19508.1| rhomboid family protein [Bacillus thuringiensis serovar finitimus
YBT-020]
Length = 190
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 42/77 (54%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T+ H + H SN L++ G +E++ G+F + + +G N S+LI+P
Sbjct: 47 WWRLITSLLVHVDLQHFLSNSICLFMLGSSIEKQLGHFSFIIIFFLSGILGNISSYLIMP 106
Query: 195 KNAVSVGASGAVFGLFA 211
+ GASG +FGL
Sbjct: 107 HEYIHAGASGGIFGLLG 123
>gi|423462496|ref|ZP_17439290.1| hypothetical protein IEI_05633 [Bacillus cereus BAG5X2-1]
gi|401131790|gb|EJQ39440.1| hypothetical protein IEI_05633 [Bacillus cereus BAG5X2-1]
Length = 190
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 42/77 (54%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T+ H + H SN L++ G +E++ G+F + + +G N S+LI+P
Sbjct: 47 WWRLITSLLVHVDLQHFLSNSICLFVLGSSIEKQLGHFSFIIIFFLSGILGNISSYLIMP 106
Query: 195 KNAVSVGASGAVFGLFA 211
+ GASG +FGL
Sbjct: 107 LEYIHAGASGGIFGLLG 123
>gi|392531337|ref|ZP_10278474.1| membrane endopeptidase [Carnobacterium maltaromaticum ATCC 35586]
gi|414084202|ref|YP_006992910.1| rhomboid family protein [Carnobacterium maltaromaticum LMA28]
gi|412997786|emb|CCO11595.1| rhomboid family protein [Carnobacterium maltaromaticum LMA28]
Length = 236
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 74/136 (54%), Gaps = 11/136 (8%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T F H W HL+ N +Y G +E+ G++ L Y+ +G A N S+
Sbjct: 62 WWRLITPMFLHIGWLHLAVNSVCVYYIGTHLEKIMGHWRFALIYLLSGVAGNVASFAF-- 119
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWD----WRKILE---VLILGQFVVE--KVMEAAQA 245
++VS GAS ++FGLFA ++++ ++ +R+I + +LI+ F+ + +
Sbjct: 120 SDSVSAGASTSIFGLFATTLMLAETFKGNAYYREIAKTFGILIVFNFITGFLSIGDGNVD 179
Query: 246 SAGMSGTFIGGYSVQS 261
+AG +G +GG+ + +
Sbjct: 180 NAGHAGGLVGGFLIAT 195
>gi|423671683|ref|ZP_17646687.1| hypothetical protein IKO_04961 [Bacillus cereus VDM034]
gi|401291504|gb|EJR97175.1| hypothetical protein IKO_04961 [Bacillus cereus VDM034]
Length = 190
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 62/129 (48%), Gaps = 8/129 (6%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T+ H + H SN L+ FG +E++ G+F + + +G N S++I+P
Sbjct: 47 WWRVITSLLVHVDLQHFLSNSICLFAFGSSIEKQLGHFSFIIIFFLSGILGNISSYIIMP 106
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWRK-------ILEVLILGQFVVEKVMEAAQASA 247
+ GASG +FGL + + S +R I ++IL + +A +
Sbjct: 107 LEYIHAGASGGIFGLLGAQLFLLYS-RYRSSKPRDIAIFSIMILILLLFTFFNPSANPIS 165
Query: 248 GMSGTFIGG 256
++G IGG
Sbjct: 166 HLTGLIIGG 174
>gi|47567486|ref|ZP_00238198.1| glp regulon protein (glpG) isolog [Bacillus cereus G9241]
gi|47555888|gb|EAL14227.1| glp regulon protein (glpG) isolog [Bacillus cereus G9241]
Length = 190
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 42/77 (54%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T+ H + H SN L++ G +E++ G+F + + +G N S+LI+P
Sbjct: 47 WWRLMTSLLVHVDLQHFLSNSICLFVLGSSIEKQLGHFSFLIIFFLSGILGNISSYLIMP 106
Query: 195 KNAVSVGASGAVFGLFA 211
+ GASG +FGL
Sbjct: 107 HEYIHAGASGGIFGLLG 123
>gi|228983495|ref|ZP_04143705.1| Rhomboid [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
gi|228776239|gb|EEM24595.1| Rhomboid [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
Length = 190
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 42/77 (54%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T+ H + H SN L++ G +E++ G+F + + +G N S+LI+P
Sbjct: 47 WWRLITSLLVHVDLQHFLSNSICLFMLGSSIEKQLGHFSFIIIFFLSGILGNISSYLIMP 106
Query: 195 KNAVSVGASGAVFGLFA 211
+ GASG +FGL
Sbjct: 107 HEYIHAGASGGIFGLLG 123
>gi|302384591|ref|YP_003820413.1| rhomboid family protein [Clostridium saccharolyticum WM1]
gi|302195219|gb|ADL02790.1| Rhomboid family protein [Clostridium saccharolyticum WM1]
Length = 206
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 72/146 (49%), Gaps = 16/146 (10%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLI-- 192
+++ +T+ F H NH+ +N+ L+I G +E G+ L Y+ G AN +S ++
Sbjct: 56 YFRLLTSVFMHFGINHIMNNMLILFILGDNLERALGHIKYLLFYLLCGVGANVISIILNL 115
Query: 193 -LPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSG 251
++ VS GASGA+FG+ I L+ + R LE L Q + +M A G +
Sbjct: 116 GDYRSVVSAGASGAIFGV--IGGLLYAVFINRGRLEDLSARQLI---IMIACSLYFGFTS 170
Query: 252 TFIGGYSVQSINHIAHLSGALFGVFL 277
T +++ AH+ G FG+ L
Sbjct: 171 T--------GVDNAAHIGGLFFGIVL 188
>gi|254410418|ref|ZP_05024197.1| peptidase, S54 (rhomboid) family [Coleofasciculus chthonoplastes
PCC 7420]
gi|196182624|gb|EDX77609.1| peptidase, S54 (rhomboid) family [Coleofasciculus chthonoplastes
PCC 7420]
Length = 231
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 72/158 (45%), Gaps = 16/158 (10%)
Query: 133 PAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLI 192
P W+ +++ F H + H+ N+ FL+IFG +EE G+ ++ YI G A W
Sbjct: 67 PEWFTLISSQFLHGGFLHIGGNMLFLWIFGNNIEERLGHIKYFIFYIACGILAALSQWFF 126
Query: 193 LPKNAV-SVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEK------------V 239
++ + S+GASGA+ G+ +L + +I ++ LG FV V
Sbjct: 127 SMESGIPSLGASGAIAGVMGAYIL---RFPRAQINTLIFLGYFVTTIRLPAVLYLGLWFV 183
Query: 240 MEAAQASAGMSGTFIGGYSVQSINHIAHLSGALFGVFL 277
+A + A +S G I + AH G +FG L
Sbjct: 184 QQAFSSVASVSVQTDVGTETGGIAYWAHAGGFVFGAIL 221
>gi|338741711|ref|YP_004678673.1| rhomboid family protein [Hyphomicrobium sp. MC1]
gi|337762274|emb|CCB68109.1| Rhomboid family protein [Hyphomicrobium sp. MC1]
Length = 219
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 64/137 (46%), Gaps = 9/137 (6%)
Query: 86 DKPEERRKPKKS-----VNGVFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVT 140
D + R P + VN +F++I LN G + + + I S + W T
Sbjct: 7 DDSQVRISPIVTTALIVVNVLFFLIELNGG---NEFIQRWSFIPSRFAEDPASNWPTIFT 63
Query: 141 AAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP-KNAVS 199
A F H W HL N+ +LYIFG VEE G+ Y+ G AA F + P N +
Sbjct: 64 AMFMHGGWMHLFGNMLYLYIFGDNVEENFGHVKYLAFYLIAGIAATFAQFYFNPHSNIPN 123
Query: 200 VGASGAVFGLFAISVLV 216
VGASGA+ G+ +L+
Sbjct: 124 VGASGAIAGVLGAYLLL 140
>gi|186680986|ref|YP_001864182.1| rhomboid family protein [Nostoc punctiforme PCC 73102]
gi|186463438|gb|ACC79239.1| Rhomboid family protein [Nostoc punctiforme PCC 73102]
Length = 223
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 74/159 (46%), Gaps = 22/159 (13%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W T+ F H W HL SN+ FL++FG +E+ G+ + Y+ GA A W I
Sbjct: 61 WITLFTSQFLHGGWWHLISNMLFLWVFGNNIEDRLGHAKYLIFYLACGALAALCQWFIGM 120
Query: 195 KNAV-SVGASGAVFGLFAISVL------------VKMSWDWRKILEVLILGQFVVEKVME 241
+ + S+GASGA+ G+ ++ + + +I ++I+G F V+ V+
Sbjct: 121 NSEIPSLGASGAISGVLGAYIIRFPHAKVMTLVFLGIFITTIRIPALVIIGLFFVQNVIS 180
Query: 242 A---AQASAGMSGTFIGGYSVQSINHIAHLSGALFGVFL 277
Q +A M+ + + AH+ G +FGV L
Sbjct: 181 GLATLQTAAHMT------VQTGGVAYWAHIGGFVFGVIL 213
>gi|440680446|ref|YP_007155241.1| Peptidase S54, rhomboid domain protein [Anabaena cylindrica PCC
7122]
gi|428677565|gb|AFZ56331.1| Peptidase S54, rhomboid domain protein [Anabaena cylindrica PCC
7122]
Length = 235
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 4/103 (3%)
Query: 133 PAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLI 192
P W +TA F H HL+ N+ FL++FG VEE+ G L Y+ G A+ W
Sbjct: 67 PEWVTLITAQFLHGGILHLAGNMLFLWVFGNNVEEKLGGIKYLLFYLSCGVLASLTQWYF 126
Query: 193 LPKNAV-SVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQF 234
+++ S+GASGA+ G+ ++ + +IL VL LG F
Sbjct: 127 SQNSSIPSLGASGAIAGVMGAYII---RFPQAEILTVLPLGIF 166
>gi|145221663|ref|YP_001132341.1| rhomboid family protein [Mycobacterium gilvum PYR-GCK]
gi|145214149|gb|ABP43553.1| Rhomboid family protein [Mycobacterium gilvum PYR-GCK]
Length = 279
Score = 57.4 bits (137), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 55/98 (56%), Gaps = 3/98 (3%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
Y+ +T+AF H HL+ N+ LY G +E G Y+ + + + +L L
Sbjct: 107 YRLLTSAFLHFGLTHLAFNMLALYFVGPPLEAALGRARFITLYLVSALGGSVLVYL-LTL 165
Query: 196 NAVSVGASGAVFGLFAISVLV--KMSWDWRKILEVLIL 231
NA++ GASGAVFGLF + +V K++ D R ++ +++L
Sbjct: 166 NALTAGASGAVFGLFGATFVVGRKLNMDVRSVMAIIVL 203
>gi|333368401|ref|ZP_08460601.1| rhomboid family protein [Psychrobacter sp. 1501(2011)]
gi|332977324|gb|EGK14112.1| rhomboid family protein [Psychrobacter sp. 1501(2011)]
Length = 206
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 66/147 (44%), Gaps = 14/147 (9%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVE----EEEGNFGLWLSYIFTGAAANFVSW 190
WY+F+T F HA+ HL N+F LY FG+ VE + G FG Y+ A S+
Sbjct: 45 WYRFITHGFIHADSTHLLFNMFTLYFFGRAVERFFNQFLGGFGFLAVYLGAIIVAMIPSY 104
Query: 191 LILPKNA--VSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAG 248
L +A S+GASG V + S ++ W + VL + V A A
Sbjct: 105 LQHKNDANYRSLGASGGVSAIL-FSFILMAPWSMLYLFAVLPIPAIVFAIAYVAYSVYAN 163
Query: 249 MSGTFIGGYSVQSINHIAHLSGALFGV 275
G +INH+AHL G FGV
Sbjct: 164 NKGN-------SNINHLAHLWGGGFGV 183
>gi|418937850|ref|ZP_13491441.1| Rhomboid family protein [Rhizobium sp. PDO1-076]
gi|375055443|gb|EHS51700.1| Rhomboid family protein [Rhizobium sp. PDO1-076]
Length = 269
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 137 QFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKN 196
+VT AF HA+W H SN+ FL++FG VE+ G++ Y+ AA V L+ P +
Sbjct: 74 TYVTYAFLHASWLHFGSNMLFLWVFGDNVEDALGHWRFLFFYLVCAAAGALVHGLLAPTS 133
Query: 197 -AVSVGASGAVFGLFA 211
A +GASGAV G+ A
Sbjct: 134 QAPLIGASGAVSGVVA 149
>gi|300866131|ref|ZP_07110854.1| Rhomboid family protein [Oscillatoria sp. PCC 6506]
gi|300335867|emb|CBN56012.1| Rhomboid family protein [Oscillatoria sp. PCC 6506]
Length = 231
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 74/167 (44%), Gaps = 32/167 (19%)
Query: 132 FPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWL 191
FP W +T+ F H + H++ N+ FL+IFG VE+ G+ + Y+ G A+ W
Sbjct: 66 FPEWVTLITSQFLHGGFLHVAGNMLFLWIFGNNVEDRLGHVKFIVFYLACGVLASLTQWY 125
Query: 192 ILPKNAV-SVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEA-------- 242
+ + S+GASGA+ G+ +L + K+L +L LG F + A
Sbjct: 126 FSSASQIPSLGASGAIAGVMGAYIL---RYPKAKVLTLLPLGIFFTTVRISAFWFLGFWF 182
Query: 243 ------------AQASAGMSGTFIGGYSVQSINHIAHLSGALFGVFL 277
A A+ GM G GG I + AH G +FG L
Sbjct: 183 LQQAFYGVASVNAPANIGMEG---GG-----IAYWAHAGGFVFGALL 221
>gi|429195115|ref|ZP_19187166.1| peptidase, S54 family [Streptomyces ipomoeae 91-03]
gi|428669169|gb|EKX68141.1| peptidase, S54 family [Streptomyces ipomoeae 91-03]
Length = 296
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 58/99 (58%), Gaps = 2/99 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ +T+ F H + H++ N+ L+ G +E G Y +G A +++L+
Sbjct: 133 WYRLLTSMFLHGSVMHIAFNMLSLWWLGGPLEAALGRARYIALYFVSGLAGGALTYLLAA 192
Query: 195 KNAVSVGASGAVFGLF-AISVLV-KMSWDWRKILEVLIL 231
N S+GASGA+FGLF A +VL+ ++ +D R ++ +L++
Sbjct: 193 PNQASLGASGAIFGLFGATAVLMRRLKYDMRPVVILLVI 231
>gi|403331557|gb|EJY64731.1| Rhomboid family protein [Oxytricha trifallax]
Length = 278
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 73/155 (47%), Gaps = 18/155 (11%)
Query: 127 YLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAAN 186
Y+ + + W +F+ F HA++ HL+SN+F ++FG +E G F + Y +G
Sbjct: 89 YMRYQYQVW-RFIMPIFLHADFVHLTSNIFSQFVFGSYLESTIGFFNFTILYFLSGIGGI 147
Query: 187 FVSWLILPKNAVSVGASGAVFGL---FAISVLVKMSWDWRKILEVLILGQF-VVEKVMEA 242
S L +A SVGAS A+FGL FA ++V R+ + + F ++ +M
Sbjct: 148 LFSS--LASDATSVGASTAIFGLMGSFAAYLIVNWKNLERQPQQKYTIAIFLIIGLLMNL 205
Query: 243 AQASAGMSGTFIGGYSVQSINHIAHLSGALFGVFL 277
QA S I+ I HL G L G+ L
Sbjct: 206 TQAQ-----------SNSKIDSIGHLGGFLTGLIL 229
>gi|209525149|ref|ZP_03273692.1| Rhomboid family protein [Arthrospira maxima CS-328]
gi|376002512|ref|ZP_09780339.1| Putative peptidase, S54 (Rhomboid) family [Arthrospira sp. PCC
8005]
gi|209494334|gb|EDZ94646.1| Rhomboid family protein [Arthrospira maxima CS-328]
gi|375329083|emb|CCE16092.1| Putative peptidase, S54 (Rhomboid) family [Arthrospira sp. PCC
8005]
Length = 222
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 74/159 (46%), Gaps = 15/159 (9%)
Query: 131 NFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSW 190
FPAW +T+ F H H+ N+ FL IFG +E+ G+F + YI G AA +
Sbjct: 52 TFPAWLTLITSQFMHGGIGHIVGNMLFLSIFGNNIEDCLGHFKFLIFYILCGIAAALIQG 111
Query: 191 LILPKNAVS-VGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVME-------- 241
P + + +GASGA+ G+ + L++ + K+L + F+ ++
Sbjct: 112 FSSPDSIIPLLGASGAIAGVLG-AYLIR--FPRAKLLVIFPFFPFIPMRLPAYFFLILWF 168
Query: 242 AAQASAGMSGTFIG---GYSVQSINHIAHLSGALFGVFL 277
A Q AG S I G V + + AH G +FG+ L
Sbjct: 169 AFQFIAGTSTANIDTATGEEVGGVAYWAHAGGFIFGIIL 207
>gi|423067794|ref|ZP_17056584.1| rhomboid family protein [Arthrospira platensis C1]
gi|406710693|gb|EKD05898.1| rhomboid family protein [Arthrospira platensis C1]
Length = 222
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 74/159 (46%), Gaps = 15/159 (9%)
Query: 131 NFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSW 190
FPAW +T+ F H H+ N+ FL IFG +E+ G+F + YI G AA +
Sbjct: 52 TFPAWLTLITSQFMHGGIGHIVGNMLFLSIFGNNIEDCLGHFKFLIFYILCGIAAALIQG 111
Query: 191 LILPKNAVS-VGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVME-------- 241
P + + +GASGA+ G+ + L++ + K+L + F+ ++
Sbjct: 112 FSSPDSIIPLLGASGAIAGVLG-AYLIR--FPRAKLLVIFPFFPFIPMRLPAYFFLILWF 168
Query: 242 AAQASAGMSGTFIG---GYSVQSINHIAHLSGALFGVFL 277
A Q AG S I G V + + AH G +FG+ L
Sbjct: 169 AFQFIAGTSTANIDTATGEEVGGVAYWAHAGGFIFGIIL 207
>gi|423556772|ref|ZP_17533075.1| hypothetical protein II3_01977 [Bacillus cereus MC67]
gi|401194087|gb|EJR01079.1| hypothetical protein II3_01977 [Bacillus cereus MC67]
Length = 182
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 62/129 (48%), Gaps = 8/129 (6%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T+ H + H SN L++ G +E++ G+F + + +G N S++I+P
Sbjct: 47 WWRVITSLLVHVDLQHFLSNSICLFVLGSSIEKQLGHFSFIIIFFLSGILGNISSYIIMP 106
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWRK-------ILEVLILGQFVVEKVMEAAQASA 247
+ GASG +FGL + + S +R I ++IL + +A +
Sbjct: 107 FEYIHAGASGGIFGLLGAQLFLLYS-RYRSSKPRDIAIFSIMILILLLFTFFNPSANPIS 165
Query: 248 GMSGTFIGG 256
++G IGG
Sbjct: 166 HLTGLIIGG 174
>gi|297539145|ref|YP_003674914.1| Rhomboid family protein [Methylotenera versatilis 301]
gi|297258492|gb|ADI30337.1| Rhomboid family protein [Methylotenera versatilis 301]
Length = 346
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 69/147 (46%), Gaps = 19/147 (12%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ TA F H HL N++ L+ G+LVE G+ Y+ +G N VS +I
Sbjct: 63 WWRLGTAMFLHFGIIHLLVNVWSLWDAGQLVERMYGHLRFAGIYVLSGLTGNLVSLVIQG 122
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWRKIL-----EVLILGQFVVEKVMEAAQASAGM 249
AVS GASGA+FG++ L+ W R+ + L G AS
Sbjct: 123 NAAVSGGASGAIFGVYG--ALLTFLWRERQSIARHEFRWLFWG------------ASVFS 168
Query: 250 SGTFIGGYSVQSINHIAHLSGALFGVF 276
T + G+ V I++ AH+ G L G+F
Sbjct: 169 VATIVFGFIVPGIDNSAHIGGFLTGIF 195
>gi|20806909|ref|NP_622080.1| hypothetical protein TTE0400 [Thermoanaerobacter tengcongensis MB4]
gi|20515384|gb|AAM23684.1| uncharacterized membrane protein (homolog of Drosophila rhomboid)
[Thermoanaerobacter tengcongensis MB4]
Length = 227
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 73/150 (48%), Gaps = 8/150 (5%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
Y F+T+ F H N HL SN++ L++FG VE+ G+ + Y+ +G A + P
Sbjct: 69 YPFITSMFLHGNTFHLISNMWILWLFGDNVEDRMGHIRFLIFYLLSGVIAGVFHLVFNPI 128
Query: 196 NAVS-VGASGAVFG-------LFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASA 247
+ V VGASGA+ G LF + ++ + + + L + V + Q +
Sbjct: 129 SPVPVVGASGAIAGIMGAYFVLFPSARIITLVPSFFLVPVFLPIPAVVYLFLWFLTQLYS 188
Query: 248 GMSGTFIGGYSVQSINHIAHLSGALFGVFL 277
GM + IGG +V I AH+ G + GV L
Sbjct: 189 GMVYSVIGGTTVGGIAWWAHIGGFISGVLL 218
>gi|325066302|ref|ZP_08124975.1| hypothetical protein AoriK_00701 [Actinomyces oris K20]
Length = 284
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 15/155 (9%)
Query: 78 DMISQLELDKPEERRKPKKSVNGVFWIILLNLGLYVADHVFQVR----SIKSLYLYHNF- 132
D Q + + + R +V + + +GL + + QV +++SL L F
Sbjct: 50 DCARQSQAGRRQARTLLGGNVTSGALVTKILIGLCIVFYALQVLIPEVTMQSLELRLGFV 109
Query: 133 PAW-----YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTG-AAAN 186
PA ++F+T AF HAN+ HL N++ L++ G +E G + Y+ + +
Sbjct: 110 PALAVYEPWRFLTTAFLHANYMHLGFNMWALWVLGGALEPVLGRWRFTCVYLLSALGGST 169
Query: 187 FVSWLILPKN----AVSVGASGAVFGLFAISVLVK 217
+ WL LP ++VGASGAVFGLF+ +V+
Sbjct: 170 MIYWLSLPDAESWLTLTVGASGAVFGLFSAMFIVQ 204
>gi|227500934|ref|ZP_03930983.1| S54 family peptidase [Anaerococcus tetradius ATCC 35098]
gi|227216905|gb|EEI82299.1| S54 family peptidase [Anaerococcus tetradius ATCC 35098]
Length = 226
Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 51/93 (54%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ TAAF H + H+ N++FLY G L E+ G+ + Y+ G N ++
Sbjct: 56 WWRIFTAAFIHIGFFHILFNMYFLYSIGPLFEKLYGSRNFLIIYLLAGIMGNLFTYAFAS 115
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWRKILE 227
N VS GAS +++G+F +++ + +++ IL
Sbjct: 116 NNTVSAGASTSLYGIFGLAIGLMINYRDDDILR 148
>gi|345007980|ref|YP_004810334.1| rhomboid family protein [Streptomyces violaceusniger Tu 4113]
gi|344034329|gb|AEM80054.1| Rhomboid family protein [Streptomyces violaceusniger Tu 4113]
Length = 294
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 59/99 (59%), Gaps = 2/99 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ VT+ F H H++ N+ L+ G +E G + YI +G + +S+L+
Sbjct: 130 WWRLVTSIFLHQQLIHIAFNMLSLWWIGGPLEAALGRVRFIVLYILSGLGGSALSYLLAA 189
Query: 195 KNAVSVGASGAVFGLF-AISVLV-KMSWDWRKILEVLIL 231
+N S+GASGA+FGL A +VL+ ++++D R ++ +L L
Sbjct: 190 QNQPSLGASGAIFGLLGATAVLMRRLNYDMRPVIALLAL 228
>gi|291569034|dbj|BAI91306.1| hypothetical protein [Arthrospira platensis NIES-39]
Length = 251
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 131 NFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSW 190
FPAW +T+ F H H+ N+ FL IFG +E+ G+F + YI G AA +
Sbjct: 81 TFPAWLTLITSQFMHGGIGHIVGNMLFLSIFGNNIEDCLGHFKFLIFYILCGIAAALIQG 140
Query: 191 LILPKNAVS-VGASGAVFGLFA 211
P + + +GASGA+ G+
Sbjct: 141 FASPDSIIPLLGASGAIAGVLG 162
>gi|336322792|ref|YP_004602759.1| rhomboid family protein [Flexistipes sinusarabici DSM 4947]
gi|336106373|gb|AEI14191.1| Rhomboid family protein [Flexistipes sinusarabici DSM 4947]
Length = 224
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
Y F T+ F H W HL SN++FL+IFG VE++ G+ YI G AA ++
Sbjct: 66 YPFFTSMFLHGGWFHLISNMYFLFIFGDNVEDDLGHVKYLFVYILFGLAAAITQVIMFSN 125
Query: 196 NAV-SVGASGAVFGL 209
+ + ++GASGAV G+
Sbjct: 126 SGIPTIGASGAVAGV 140
>gi|295837743|ref|ZP_06824676.1| rhomboid family protein [Streptomyces sp. SPB74]
gi|295826650|gb|EFG64961.1| rhomboid family protein [Streptomyces sp. SPB74]
Length = 338
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 67/143 (46%), Gaps = 15/143 (10%)
Query: 104 IILLNLGLYVADHVF--QVRSIKSLYLYHNFPA-----------WYQFVTAAFCHANWNH 150
+I LNL ++V R + L + FP+ WY+ +TA F H H
Sbjct: 131 LIALNLAVFVLVKAAPDSARLLDDLVMVARFPSYPQPIGVAEGEWYRLLTATFLHEEVWH 190
Query: 151 LSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLF 210
+ N+ L++ G +E G Y+ G + S+L S+GASGA+FGLF
Sbjct: 191 IGLNMLSLWMLGGPIEALLGRARFLTLYLLAGVGGSVASFLFADPLGASLGASGAIFGLF 250
Query: 211 -AISVLV-KMSWDWRKILEVLIL 231
A VLV ++ D+R + +L++
Sbjct: 251 GATGVLVLRVRADFRPFVALLVI 273
>gi|398386418|ref|ZP_10544419.1| putative membrane protein [Sphingobium sp. AP49]
gi|397718201|gb|EJK78793.1| putative membrane protein [Sphingobium sp. AP49]
Length = 212
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 67/154 (43%), Gaps = 16/154 (10%)
Query: 133 PAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLI 192
PAW ++ HA W H+ NL L G+ VE+ G G L Y+ A V W I
Sbjct: 49 PAWLTPISCTLIHAGWLHVGFNLLMLIFCGRQVEQVLGKMGTLLLYVAGAYGATLVQWAI 108
Query: 193 LPKNA-VSVGASGAVFGLFAISVLVKMSWDWRKI-------LEVLILGQ-FVVEKVMEAA 243
P + VGASGA+ + A L+ R+I + +L L ++V ++M
Sbjct: 109 DPASTNPMVGASGAISAIIATYALLYSQQQVRRIGPFSANMVRILWLAAGWIVIQLMIGL 168
Query: 244 QASAGMSGTFIGGYSVQSINHIAHLSGALFGVFL 277
+ G+ G + I AH+ G L G+ L
Sbjct: 169 ATAGGLEG-------IGQIAVAAHIGGFLTGLIL 195
>gi|402820323|ref|ZP_10869890.1| hypothetical protein IMCC14465_11240 [alpha proteobacterium
IMCC14465]
gi|402511066|gb|EJW21328.1| hypothetical protein IMCC14465_11240 [alpha proteobacterium
IMCC14465]
Length = 277
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 77/163 (47%), Gaps = 27/163 (16%)
Query: 129 YHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLS-YIFTGAAANF 187
Y PAW +T+ F H HL N+ +L+IFG +E+ G+ +++ Y+ G+AA F
Sbjct: 64 YQLVPAWTTVLTSMFLHGGIMHLLGNMLYLWIFGDNIEDCVGSKSRYIALYVCCGSAAAF 123
Query: 188 VSWLILPKNAVS-VGASGAVFGLFA----------ISVLVKMSWDWRKI--LEVLILGQF 234
L+ P + + +GASGA+ G+ I LV +R I L+LG +
Sbjct: 124 AQSLVDPNSMIPMIGASGAIAGMLGAYLVLHPRANIICLVGFFVFFRTINVPAFLVLGGW 183
Query: 235 VVEKVMEAAQASAGMSGTFIGGYSVQSINHIAHLSGALFGVFL 277
+ + + Q +G++ ++AH+ G + G+ L
Sbjct: 184 IGLQFLNLGQVDSGVA-------------YVAHIGGFIAGIIL 213
>gi|428776856|ref|YP_007168643.1| rhomboid family protein [Halothece sp. PCC 7418]
gi|428691135|gb|AFZ44429.1| Rhomboid family protein [Halothece sp. PCC 7418]
Length = 236
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 74/174 (42%), Gaps = 26/174 (14%)
Query: 122 SIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFT 181
S + + + P W TA F H HL N+ +L++FG +EE G + Y+
Sbjct: 56 SFRGITVNQPVPEWLTLFTAQFLHGGILHLGGNMLYLWVFGDNIEEVLGRIRYVIFYLLC 115
Query: 182 GAAANFVSWLILPKNAV-SVGASGAVFGLFAISVL------------VKMSWDWRKILEV 228
G A+ W ++ V S+GASGA+ G+ VL + + W ++ +
Sbjct: 116 GVLASLAQWFFSSQSGVPSLGASGAIAGIMGAYVLRFYDREILTLLPIFIIWTTIRVPAI 175
Query: 229 LILGQFVVEKVMEA-----AQASAGMSGTFIGGYSVQSINHIAHLSGALFGVFL 277
+G + +++ AS GM G GG + + AH G +FG L
Sbjct: 176 FFIGFWFIQQAFYGVASLNTSASIGMEG---GG-----VAYWAHAGGFVFGAIL 221
>gi|315446599|ref|YP_004079478.1| hypothetical protein Mspyr1_51170 [Mycobacterium gilvum Spyr1]
gi|315264902|gb|ADU01644.1| uncharacterized membrane protein [Mycobacterium gilvum Spyr1]
Length = 279
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 55/98 (56%), Gaps = 3/98 (3%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
Y+ +T+AF H HL+ N+ LY G +E G Y+ + + + +L L
Sbjct: 107 YRLLTSAFLHFGLTHLAFNMLALYFVGPPLEAALGRARFVTLYLVSALGGSVLVYL-LTF 165
Query: 196 NAVSVGASGAVFGLFAISVLV--KMSWDWRKILEVLIL 231
NA++ GASGAVFGLF + +V K++ D R ++ +++L
Sbjct: 166 NALTAGASGAVFGLFGATFVVGRKLNMDVRSVMAIIVL 203
>gi|404443258|ref|ZP_11008430.1| rhomboid family protein [Mycobacterium vaccae ATCC 25954]
gi|403655930|gb|EJZ10759.1| rhomboid family protein [Mycobacterium vaccae ATCC 25954]
Length = 289
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 55/98 (56%), Gaps = 3/98 (3%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
Y+ VT+AF H + H++ N+ LY G +E G Y+ + + + +L L
Sbjct: 117 YRLVTSAFLHFSVTHIAFNMLALYFVGPPLEHALGRLRFVALYLLSALGGSVLVYL-LTF 175
Query: 196 NAVSVGASGAVFGLFAISVLV--KMSWDWRKILEVLIL 231
NA++ GASGAVFGLF + +V K++ D R +L ++ L
Sbjct: 176 NALTAGASGAVFGLFGATFVVGRKLNMDVRSVLAIIGL 213
>gi|296111906|ref|YP_003622288.1| small hydrophobic molecule transporter protein [Leuconostoc kimchii
IMSNU 11154]
gi|339490819|ref|YP_004705324.1| small hydrophobic molecule transporter protein [Leuconostoc sp. C2]
gi|295833438|gb|ADG41319.1| small hydrophobic molecule transporter protein, putative
[Leuconostoc kimchii IMSNU 11154]
gi|338852491|gb|AEJ30701.1| small hydrophobic molecule transporter protein, putative
[Leuconostoc sp. C2]
Length = 229
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 4/88 (4%)
Query: 128 LYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANF 187
L+H++ ++ VT F HA + H+ +N+ L+ G LVE G+ + Y+F+G N
Sbjct: 56 LHHDY---WRLVTPLFLHAGFMHVFTNMLTLWFIGPLVESSFGSRKFLILYLFSGVIGNI 112
Query: 188 VSWLILPKNAVSVGASGAVFGLFAISVL 215
S+L P VSVGAS A+FGLF +L
Sbjct: 113 FSYLFAPLT-VSVGASSALFGLFGGMIL 139
>gi|84502717|ref|ZP_01000836.1| rhomboid family protein [Oceanicola batsensis HTCC2597]
gi|84389112|gb|EAQ01910.1| rhomboid family protein [Oceanicola batsensis HTCC2597]
Length = 248
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 134 AWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLIL 193
++ FVT+ F H + H++ N+ FL+IFG +E+E G+ G Y+ +G A +L
Sbjct: 60 GFFTFVTSMFLHGGFMHIAGNMLFLWIFGDNMEDEMGHGGFLAFYLASGVGAGLAQYLAA 119
Query: 194 PKNAVS-VGASGAVFGL 209
P + V VGASGA+ G+
Sbjct: 120 PYSGVPMVGASGAIAGV 136
>gi|386853198|ref|YP_006271211.1| Rhomboid family member 2 [Actinoplanes sp. SE50/110]
gi|359840702|gb|AEV89143.1| Rhomboid family member 2 [Actinoplanes sp. SE50/110]
Length = 268
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 2/99 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ TA F H HL N+ L G+ +E G Y+ G N +L+ P
Sbjct: 105 WYRLFTAMFVHYGVVHLLLNMMVLLQLGRYLEARLGPIRFLALYLLAGFGGNVACYLLTP 164
Query: 195 KNAVSVGASGAVFGLFAISVLV--KMSWDWRKILEVLIL 231
+N S GAS AVFGL ++V K++ D R ++ +L++
Sbjct: 165 QNQPSGGASTAVFGLIIGIIIVNRKLALDVRSLIPLLVV 203
>gi|406837558|ref|ZP_11097152.1| hypothetical protein LvinD2_03024 [Lactobacillus vini DSM 20605]
Length = 244
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 65/129 (50%), Gaps = 9/129 (6%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ T F H H++ N+ L G +VEE G+F L Y+F+G + N +S P
Sbjct: 77 WWRLFTPIFLHVTIYHIAFNMAALMYAGTIVEEVYGHFKFLLIYLFSGFSGNLISAFFKP 136
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWR-------KILEVLILGQFVVEKVMEAAQASA 247
N +S GAS ++FGLFA+ L+++ ++ K VLI+ V M + A
Sbjct: 137 -NTISAGASTSLFGLFAVIALLQVVSGFKHQFTELSKGAVVLIVANLVFNLFMPSVDI-A 194
Query: 248 GMSGTFIGG 256
G G +GG
Sbjct: 195 GHLGGLVGG 203
>gi|390630603|ref|ZP_10258582.1| Membrane-associated serine protease [Weissella confusa LBAE C39-2]
gi|390484160|emb|CCF30930.1| Membrane-associated serine protease [Weissella confusa LBAE C39-2]
Length = 233
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 60/116 (51%), Gaps = 6/116 (5%)
Query: 131 NFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSW 190
++ W++ +TA F H +HL N+ LY G+L+E E G + + ++ T + N +S
Sbjct: 56 HYGEWWRLLTAGFLHVTASHLIFNMITLYFIGRLLELEIGPWRFLILFLTTVISGNLMSL 115
Query: 191 LILPKNAVSVGASGAVFGLFA----ISVLVKMSWDWRKILEVLILGQFVVEKVMEA 242
N +S GASG VFGLF + ++ K WR + ++ FV+ V+ A
Sbjct: 116 AFGAMNVISAGASGGVFGLFGAIVRLGLMDKRRAYWRS--QAKLMTAFVLLSVISA 169
>gi|229171084|ref|ZP_04298682.1| Rhomboid [Bacillus cereus MM3]
gi|228612414|gb|EEK69638.1| Rhomboid [Bacillus cereus MM3]
Length = 156
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 42/77 (54%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T+ H + H SN L++ G +E++ G+F + + +G N S+LI+P
Sbjct: 13 WWRLITSLLVHVDLQHFLSNSICLFVLGSSIEKQLGHFSFIIIFFLSGILGNISSYLIMP 72
Query: 195 KNAVSVGASGAVFGLFA 211
+ GASG +FGL
Sbjct: 73 LEYIHAGASGGIFGLLG 89
>gi|409992698|ref|ZP_11275874.1| rhomboid family protein [Arthrospira platensis str. Paraca]
gi|409936457|gb|EKN77945.1| rhomboid family protein [Arthrospira platensis str. Paraca]
Length = 222
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 131 NFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSW 190
FPAW +T+ F H H+ N+ FL IFG +E+ G+F + YI G AA +
Sbjct: 52 TFPAWLTLITSQFMHGGIGHIVGNMLFLSIFGNNIEDCLGHFKFLIFYILCGIAAALIQG 111
Query: 191 LILPKNAVS-VGASGAVFGL 209
P + + +GASGA+ G+
Sbjct: 112 FASPDSIIPLLGASGAIAGV 131
>gi|389774391|ref|ZP_10192510.1| hypothetical protein UU7_01252 [Rhodanobacter spathiphylli B39]
gi|388437990|gb|EIL94745.1| hypothetical protein UU7_01252 [Rhodanobacter spathiphylli B39]
Length = 204
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 82/178 (46%), Gaps = 27/178 (15%)
Query: 117 VFQVRSIKSLYLYHNFPAW---------YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEE 167
VF ++ + L NF W +Q VT+AF H + H++ N+ LY+FG +E
Sbjct: 19 VFLLQQVMGQVLLLNFALWPLGSGLFGVWQIVTSAFMHGSLTHIAFNMIALYMFGGTIER 78
Query: 168 EEGNFGLWLSYIFTGAAANF----VSWLILPKNAVSVGASGAVFG-LFAISVLVKMSWDW 222
G L Y +A+ V W + ++GASGA+FG L A VL +
Sbjct: 79 TFGARNFTLYYFVCAISASLLQLAVLWFFPGQVGPTLGASGAIFGLLLAFGVL----YPQ 134
Query: 223 RKILEVLI---LGQFVVEKVMEAAQASAGMSGTFIGGYSVQSINHIAHLSGALFGVFL 277
K++ + + + ++ + AA+ + G++G G + H AHL G L G+ L
Sbjct: 135 EKVMLIFLPIPMPAWLFVSLYAAAELTMGVTGIEPG------VAHFAHLGGMLGGIVL 186
>gi|343496237|ref|ZP_08734340.1| rhomboid family protein [Vibrio nigripulchritudo ATCC 27043]
gi|342821484|gb|EGU56258.1| rhomboid family protein [Vibrio nigripulchritudo ATCC 27043]
Length = 360
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 49/85 (57%), Gaps = 9/85 (10%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWL---- 191
+ VTA F H + HL+ N++FLY+ G +E+ G+ Y F G AA+ VS+
Sbjct: 196 WTLVTATFLHGDLMHLAGNMYFLYVVGDNIEDAVGHKKYLALYFFCGIAASLVSFFSNMH 255
Query: 192 -ILPKNAVSVGASGAVFGLFAISVL 215
++P SVGASGA+ G FAI +L
Sbjct: 256 GLIP----SVGASGAIAGFFAIYLL 276
>gi|399516625|ref|ZP_10758222.1| Membrane-associated serine protease [Leuconostoc
pseudomesenteroides 4882]
gi|398648534|emb|CCJ66249.1| Membrane-associated serine protease [Leuconostoc
pseudomesenteroides 4882]
Length = 227
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 69/130 (53%), Gaps = 11/130 (8%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+++ +T F HA + H+++N+ L+ G + E+ G+ Y F+G + N S+L P
Sbjct: 59 YWRLITPIFLHAGFMHIATNMLTLWFIGPIAEDAFGSRKFLGLYFFSGISGNIFSYLFSP 118
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQ----FVVEKVMEAAQASA--- 247
N +SVGAS A+FGLF L+ ++ +R V LG FV+ ++ + A+
Sbjct: 119 -NTISVGASTALFGLFG--SLMIFAYQYRHDPNVRALGSMMGLFVLLTLLSSFSATNIDL 175
Query: 248 -GMSGTFIGG 256
G G FIGG
Sbjct: 176 WGHLGGFIGG 185
>gi|159471632|ref|XP_001693960.1| rhomboid-like protein [Chlamydomonas reinhardtii]
gi|158277127|gb|EDP02896.1| rhomboid-like protein [Chlamydomonas reinhardtii]
Length = 338
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 85/174 (48%), Gaps = 15/174 (8%)
Query: 88 PEERRKPKKSVNGVFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHAN 147
PE+ R P + I N +++A + + ++ L H P +Q +T++F H +
Sbjct: 106 PEDLRSPS------YAIATANAVMFLACALVPLLPASAVLLNHKAPQIWQLLTSSFAHPS 159
Query: 148 WNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNA--VSVGASGA 205
+ +FF Y+FG++VE G + W YI GA A ++W ++P A ++ A A
Sbjct: 160 LESVMQCVFFTYVFGRVVERNHGVWTTWAVYIACGATAAALAWWLIPAKAGLLTSAAPAA 219
Query: 206 VFGLFAISVLV-KMSWDWRKILEVLILGQFV-VEKVMEAAQASAGM--SGTFIG 255
+GLF + V + +++ +K LEV L F A ASA + GT +G
Sbjct: 220 AWGLFLVGVGIPRLA---KKPLEVACLAPFAFAATTGRYAHASAALLTDGTAVG 270
>gi|334131953|ref|ZP_08505715.1| Rhomboid-like protein [Methyloversatilis universalis FAM5]
gi|333443426|gb|EGK71391.1| Rhomboid-like protein [Methyloversatilis universalis FAM5]
Length = 383
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 93/196 (47%), Gaps = 22/196 (11%)
Query: 92 RKPKKSVNGVFWIILLNLGLYVA-----DHVFQVRSIKSLYLYHNF-PA-----WYQFVT 140
R+P+ V V +I LNL ++ A ++ ++ L NF PA W++ +
Sbjct: 15 RRPRIPVTVV--LIALNLAVFAAMLAGGAGLWHSQNGVQLAWGANFGPATKDGQWWRLGS 72
Query: 141 AAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSV 200
A F H HL N+ L+ G+LVE G Y+ +G N +S ++ AVS
Sbjct: 73 AMFLHFGLLHLGMNMASLFDGGRLVERMFGPLRFLAIYVLSGLTGNLLSLIVQGDRAVSG 132
Query: 201 GASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQ 260
GASGA+FG++ L+ W R L+ +FV ++ A A + T + G ++
Sbjct: 133 GASGAIFGVY--GALLAFLWQQRDTLDRR---EFV--RLFWGAGLFAAI--TIVLGLNIP 183
Query: 261 SINHIAHLSGALFGVF 276
I++ AH+ G + G+
Sbjct: 184 GIDNGAHIGGFISGLL 199
>gi|186680987|ref|YP_001864183.1| rhomboid family protein [Nostoc punctiforme PCC 73102]
gi|186463439|gb|ACC79240.1| Rhomboid family protein [Nostoc punctiforme PCC 73102]
Length = 239
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 62/127 (48%), Gaps = 8/127 (6%)
Query: 90 ERRKPKKSVNGVFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWN 149
E P +++NG L+L V + S + ++ P W +T+ F H +
Sbjct: 31 EASLPPQALNG-----FLHLAAVVPREL--TLSFGGISIHQPVPEWATLITSQFLHGGFL 83
Query: 150 HLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAV-SVGASGAVFG 208
HL+ N+ FL+IFG VE++ G+ L Y+ G A W +++ S+GASGA+ G
Sbjct: 84 HLAGNMLFLWIFGNNVEDKLGHAKYLLFYLSCGVLAALTQWFFAQDSSIPSLGASGAIAG 143
Query: 209 LFAISVL 215
+ +L
Sbjct: 144 ILGAYIL 150
>gi|330470718|ref|YP_004408461.1| rhomboid family protein [Verrucosispora maris AB-18-032]
gi|328813689|gb|AEB47861.1| rhomboid family protein [Verrucosispora maris AB-18-032]
Length = 269
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 63/142 (44%), Gaps = 22/142 (15%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ VTA F H HL N++ L++ G+ +E G Y G N ++ P
Sbjct: 105 WYRLVTAMFLHYGILHLLLNMWALWVLGQSLEAVLGPLRFAALYFIAGFGGNVAVYVFSP 164
Query: 195 KNAVSVGASGAVFGLFA--ISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGT 252
N +S GAS A+FGLFA ++ ++ D IL +L++
Sbjct: 165 PNQMSAGASTAIFGLFAAIFVIMRRLGRDTSAILPILVI--------------------N 204
Query: 253 FIGGYSVQSINHIAHLSGALFG 274
I ++V I+ HL G +FG
Sbjct: 205 LIFTFTVPQISIAGHLGGLVFG 226
>gi|408825539|ref|ZP_11210429.1| hypothetical protein SsomD4_00040 [Streptomyces somaliensis DSM
40738]
Length = 292
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 56/99 (56%), Gaps = 2/99 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ +T+ F H H+ N+ L++ G +E G Y+ +G A + ++++++
Sbjct: 128 WYRILTSVFLHQEVWHIGFNMLGLWMLGGPLEAALGRVRYLALYLLSGLAGSALTYVLVA 187
Query: 195 KNAVSVGASGAVFGLFAIS--VLVKMSWDWRKILEVLIL 231
N S+GASGAVFGL + +L ++ +D R +L ++ L
Sbjct: 188 PNQPSLGASGAVFGLMGATFVLLRRLRYDPRPVLGLIAL 226
>gi|411118459|ref|ZP_11390840.1| putative membrane protein [Oscillatoriales cyanobacterium JSC-12]
gi|410712183|gb|EKQ69689.1| putative membrane protein [Oscillatoriales cyanobacterium JSC-12]
Length = 238
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 130 HNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVS 189
H P W T+ F H + HL+ N+ FL+IFG VEE G+ + Y+ GA A
Sbjct: 64 HPVPEWVTLFTSQFLHGGFLHLAGNMLFLWIFGNNVEESLGHIKYLVFYLVCGALAALTQ 123
Query: 190 WLILPKNAV-SVGASGAVFGLFAISVL 215
W + + S+GASGA+ G+ +L
Sbjct: 124 WFFSAYSPIPSLGASGAIAGVMGAYIL 150
>gi|374316397|ref|YP_005062825.1| hypothetical protein [Sphaerochaeta pleomorpha str. Grapes]
gi|359352041|gb|AEV29815.1| putative membrane protein [Sphaerochaeta pleomorpha str. Grapes]
Length = 213
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 72/141 (51%), Gaps = 12/141 (8%)
Query: 137 QFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAA---NFVSWLIL 193
QF T F H ++H+ N+ L+IFG +VE+ G+ L Y+ TG + +F+ +L
Sbjct: 60 QFFTYMFVHGGFSHIFFNMLSLFIFGTMVEQRVGSKEFLLFYLLTGIVSGIISFLCYLAA 119
Query: 194 PKNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEK-VMEAAQASAGMSGT 252
N + VGASGA++G + ++ + + + + V + G + V+ A +S
Sbjct: 120 GTNVILVGASGAIYG---VLLMFAVFYPYAR---VFVFGLIPIRAPVLVVLYAFIELSSQ 173
Query: 253 FIGGYSVQSINHIAHLSGALF 273
G + ++ H+ HLSG LF
Sbjct: 174 VFG--AGGNVAHLTHLSGLLF 192
>gi|333977955|ref|YP_004515900.1| rhomboid family protein [Desulfotomaculum kuznetsovii DSM 6115]
gi|333821436|gb|AEG14099.1| Rhomboid family protein [Desulfotomaculum kuznetsovii DSM 6115]
Length = 231
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 133 PAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLI 192
P F+TA F H W HL N+ +L+IFG VE+ G+F L Y+ G + L
Sbjct: 66 PLLLPFITAMFLHGGWVHLGGNMLYLWIFGDNVEDRLGHFRFLLFYLLCGMVGSLAHILA 125
Query: 193 LPKNAVSV-GASGAVFGLFA 211
P + V V GASGA+ G+
Sbjct: 126 NPTSPVPVIGASGAIAGVLG 145
>gi|119513028|ref|ZP_01632085.1| Rhomboid-like protein [Nodularia spumigena CCY9414]
gi|119462308|gb|EAW43288.1| Rhomboid-like protein [Nodularia spumigena CCY9414]
Length = 238
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
Query: 133 PAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLI 192
P W +TA F H + HL N+ FL++FG +EE+ G L Y+ G A+ W
Sbjct: 66 PKWATLITAQFLHGGFLHLGGNMLFLWVFGNNIEEKLGRAKYLLFYLSCGVLASLAQWFF 125
Query: 193 LPKNAV-SVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQF 234
+ + S+GASGA+ G+ +L + +IL V+ LG F
Sbjct: 126 AQDSTIPSLGASGAIAGVMGAYIL---RFPQVEILGVVPLGFF 165
>gi|407773391|ref|ZP_11120692.1| putative rhomboid serine protease [Thalassospira profundimaris
WP0211]
gi|407283855|gb|EKF09383.1| putative rhomboid serine protease [Thalassospira profundimaris
WP0211]
Length = 324
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 77/162 (47%), Gaps = 25/162 (15%)
Query: 129 YHNFPAWYQFVT---AAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAA 185
+ FPA + F++ A F H W HL N+ +L+IFG VE+ G+F + Y+ G AA
Sbjct: 63 FSPFPAGFGFLSIFSAMFMHGGWMHLGGNMLYLWIFGNNVEDSMGHFRFLIFYLACGVAA 122
Query: 186 NFVSWLILPKNAVS-VGASGAVFGLFA--------ISVLVKMSWDWR-KILEVLILGQFV 235
L+ ++ + +GASGA+ G+ VLV W + + V++LG +
Sbjct: 123 ALGHGLLDTQSEIPMIGASGALAGVLGAYFLLYPKARVLVWFFWVFVFYVPAVVVLGFWF 182
Query: 236 VEKVMEAAQASAGMSGTFIGGYSVQSINHIAHLSGALFGVFL 277
+ +V+ + G I +AH++G L GV L
Sbjct: 183 ITQVINFGSGAGG------------GIAWVAHIAGFLAGVAL 212
>gi|152974079|ref|YP_001373596.1| rhomboid family protein [Bacillus cytotoxicus NVH 391-98]
gi|152022831|gb|ABS20601.1| Rhomboid family protein [Bacillus cytotoxicus NVH 391-98]
Length = 186
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 46/82 (56%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++F+T+ F H ++ H SN+ L I G +E+ G+ + + G + N +S+LI+
Sbjct: 49 WWRFITSLFLHVDFQHFLSNMICLLILGLSIEKYLGSIAFSIIFFTAGISGNILSYLIMS 108
Query: 195 KNAVSVGASGAVFGLFAISVLV 216
+ GASG++FGL + +
Sbjct: 109 ITYIHTGASGSIFGLLGAQLFI 130
>gi|255526224|ref|ZP_05393142.1| Rhomboid family protein [Clostridium carboxidivorans P7]
gi|296185575|ref|ZP_06853984.1| peptidase, S54 (rhomboid) family protein [Clostridium
carboxidivorans P7]
gi|255510064|gb|EET86386.1| Rhomboid family protein [Clostridium carboxidivorans P7]
gi|296049703|gb|EFG89128.1| peptidase, S54 (rhomboid) family protein [Clostridium
carboxidivorans P7]
Length = 323
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 15/140 (10%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+Y+ +T F H HL N+F LY G +E+ G + Y +G ++ S++
Sbjct: 186 YYRLITCMFLHGGIMHLLLNMFALYSLGPFIEKIYGKTRYLIIYFLSGIVSSIFSYMF-- 243
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFI 254
AVS+GASGA+FGL +++ M R +G+ + ++ + M
Sbjct: 244 STAVSIGASGAIFGLLGAALIFAMKMKDR-------IGRGFITNIVSVIFINLFM----- 291
Query: 255 GGYSVQSINHIAHLSGALFG 274
G+S+ ++++ HL G + G
Sbjct: 292 -GFSMSNVDNFGHLGGLIGG 310
>gi|357010436|ref|ZP_09075435.1| rhomboid family protein [Paenibacillus elgii B69]
Length = 219
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 72/140 (51%), Gaps = 15/140 (10%)
Query: 133 PAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLI 192
PA +++VTA F H + HL N F LY+F +E G++ Y+ +G A N S
Sbjct: 65 PALWRYVTAIFVHIGFQHLLFNSFALYVFAAPLERMLGSWRYAAFYLASGIAGNVASAWF 124
Query: 193 LPKNAVSVGASGAVFGLFA----ISVLVKMSWDW---RKILEVLILG---QFVVEKVMEA 242
+ GASGA++G++A +SV + D+ + + ++I+G FVV+ V
Sbjct: 125 HSDPYIGAGASGAIYGIYAAYLYLSVFRRDLIDYQTKQTVWTIVIIGFVYSFVVQNVDVY 184
Query: 243 AQASAGMSGTFIGGYSVQSI 262
A A G F+GG +V ++
Sbjct: 185 AHA-----GGFVGGLAVSAL 199
>gi|300173053|ref|YP_003772219.1| membrane-associated serine protease [Leuconostoc gasicomitatum LMG
18811]
gi|299887432|emb|CBL91400.1| Membrane-associated serine protease [Leuconostoc gasicomitatum LMG
18811]
Length = 229
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 66/131 (50%), Gaps = 7/131 (5%)
Query: 132 FPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWL 191
+ +++ VT F HA H+ +N+ L+ G + EE G+ Y+F G N +S+L
Sbjct: 57 YDQYWRLVTPLFLHAGVMHILTNMLTLWFIGPIAEETFGSRKFLGLYLFGGIVGNIMSYL 116
Query: 192 ILPKNAVSVGASGAVFGLFAISVL--VKMSWDWRKILEVLILGQFVVEKVMEAAQASA-- 247
P VSVGAS A+FG+F +L V+ D R + ++G FVV +M ++
Sbjct: 117 FAPLT-VSVGASSALFGMFGGLILYAVQFKHDSRIRAQGTMMGLFVVLNLMSGFFSTGID 175
Query: 248 --GMSGTFIGG 256
G G IGG
Sbjct: 176 MWGHIGGLIGG 186
>gi|417850304|ref|ZP_12496214.1| peptidase, S54 family [Streptococcus mitis SK1080]
gi|339452888|gb|EGP65508.1| peptidase, S54 family [Streptococcus mitis SK1080]
Length = 224
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 85/184 (46%), Gaps = 22/184 (11%)
Query: 90 ERRKPKKS-----VNGVFWIILLNLG--LYVADHVFQVRSIKSLYLYHNFP--AWYQFVT 140
+RR P S VF ++L+ G Y AD +F+ +I + FP W +F +
Sbjct: 6 DRRYPVTSFFLLVTALVFLLMLVTTGGNFYRADTLFRFGAIYGPAI-RLFPEQVW-RFFS 63
Query: 141 AAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSV 200
A F H W H N+ LY G+ VEE G+ + Y+ +G N ++ PK+ ++
Sbjct: 64 AIFVHIGWEHFIVNMLSLYYLGRQVEEIFGSKQFFFLYLLSGMMGNLFVFVFSPKS-LAA 122
Query: 201 GASGAVFGLFAISVLVK----------MSWDWRKILEVLILGQFVVEKVMEAAQASAGMS 250
GAS +++GLFA ++++ + + + V I+G ++ + A +
Sbjct: 123 GASTSLYGLFAAIIVLRYATRNPYIQQLGQSYLTLFVVNIIGSVLIPGISLAGHIGGAVG 182
Query: 251 GTFI 254
G F+
Sbjct: 183 GAFL 186
>gi|326772824|ref|ZP_08232108.1| rhomboid family protein [Actinomyces viscosus C505]
gi|326637456|gb|EGE38358.1| rhomboid family protein [Actinomyces viscosus C505]
Length = 284
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 15/155 (9%)
Query: 78 DMISQLELDKPEERRKPKKSVNGVFWIILLNLGLYVADHVFQVR----SIKSLYLYHNF- 132
D Q + + + R +V + + +GL V + QV +++SL L F
Sbjct: 50 DCARQSQAGRRQARTLLGGNVTSGALVTKILVGLCVVVYALQVLIPEVTMQSLELRLGFV 109
Query: 133 PAW-----YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTG-AAAN 186
PA ++F+T AF HAN+ HL N++ L++ G +E G + Y+ + +
Sbjct: 110 PALAASEPWRFLTTAFLHANYMHLGFNMWALWVLGGALEPVLGRWRFTCVYLLSALGGST 169
Query: 187 FVSWLILPKN----AVSVGASGAVFGLFAISVLVK 217
+ WL P ++VGASGAVFGLF+ +V+
Sbjct: 170 MIYWLSWPDTESWLTLTVGASGAVFGLFSAMFIVQ 204
>gi|157363715|ref|YP_001470482.1| rhomboid family protein [Thermotoga lettingae TMO]
gi|157314319|gb|ABV33418.1| Rhomboid family protein [Thermotoga lettingae TMO]
Length = 228
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ +TA F H HL N + L+ FG +VE G SY+ TG N + L
Sbjct: 53 WYRLITAIFVHGGLLHLLFNSYALFYFGTIVESVYGPEKFIFSYLATGVVGNIATHLFYY 112
Query: 195 KNAVSVGASGAVFGLFAI 212
+ A+SVGASG++FGL I
Sbjct: 113 R-AISVGASGSIFGLVGI 129
>gi|206890159|ref|YP_002249475.1| rhomboid family protein [Thermodesulfovibrio yellowstonii DSM
11347]
gi|206742097|gb|ACI21154.1| rhomboid family protein [Thermodesulfovibrio yellowstonii DSM
11347]
Length = 240
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 71/141 (50%), Gaps = 21/141 (14%)
Query: 88 PEERRKPKKSVNGVFWIIL-LNLGLYVADHVFQVRSIKSLYLYHNF---PAWYQ------ 137
P P++ + W+I+ LN +++ + +F + YL+H F PA Y
Sbjct: 3 PIRDCLPRRYTPYMTWLIISLNCFVFLFELMFSKEDLD--YLFHIFGVIPARYMLIDTLP 60
Query: 138 --------FVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVS 189
F+T+ F H W HL SN++ ++IF VE++ G+F + Y+ G A ++
Sbjct: 61 IDPLYYLPFLTSMFLHGGWFHLISNMWIMWIFADNVEDKMGSFRFLIFYLLCGFGAGWIH 120
Query: 190 WLILPKNAV-SVGASGAVFGL 209
L P + + +VGASGA+ G+
Sbjct: 121 CLTNPASTIPTVGASGAISGV 141
>gi|406962194|gb|EKD88637.1| rhomboid family protein [uncultured bacterium]
Length = 215
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 74/147 (50%), Gaps = 16/147 (10%)
Query: 140 TAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLI-LPKNAV 198
T+ F HA W HL N+ +L IFG VE+ G+F + Y+ +G AA + + +
Sbjct: 63 TSMFLHAGWLHLGGNMLYLLIFGDNVEDRFGHFKFLVFYVLSGLAAGLAQYAVSMFSEYP 122
Query: 199 SVGASGAVFGLFAISVLVKMSWDWRKIL--------EVLILGQFVVEKVMEAAQASAGMS 250
++GASGA+ G+ A +++ R +L +L++G ++V +++
Sbjct: 123 TLGASGAIAGVLAAYLVLFPGRRVRVLLAAWIVNLPALLVIGAWIVIQLVSGL------- 175
Query: 251 GTFIGGYSVQSINHIAHLSGALFGVFL 277
GTF + + ++AH+ G + G+ L
Sbjct: 176 GTFSDSTATGGVAYMAHIGGFVAGLVL 202
>gi|357040241|ref|ZP_09102030.1| Peptidase S54, rhomboid domain protein [Desulfotomaculum gibsoniae
DSM 7213]
gi|355356905|gb|EHG04686.1| Peptidase S54, rhomboid domain protein [Desulfotomaculum gibsoniae
DSM 7213]
Length = 227
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 133 PAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLI 192
P F+TA F H W H+ N+ FL++FG VE+ G+ L Y+ GA + L
Sbjct: 65 PIVVSFITAMFIHGGWLHVIGNMLFLWVFGDNVEDRLGHLKYLLFYLVAGATGSLAHILT 124
Query: 193 LPKNAVS-VGASGAVFGLFA 211
P + + VGASGAV G+
Sbjct: 125 DPTSTIPVVGASGAVAGVLG 144
>gi|254475060|ref|ZP_05088446.1| peptidase, S54 (rhomboid) family [Ruegeria sp. R11]
gi|214029303|gb|EEB70138.1| peptidase, S54 (rhomboid) family [Ruegeria sp. R11]
Length = 261
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 55/105 (52%), Gaps = 9/105 (8%)
Query: 121 RSIKSLY-LYHNFPA-------WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNF 172
RS++SLY Y PA VT+ F H +W HL N+ FL+IFG +E+E G+
Sbjct: 39 RSLQSLYNAYALLPAEVTAGYDLKTLVTSTFLHGSWMHLGGNMLFLWIFGDNMEDEMGHL 98
Query: 173 GLWLSYIFTGAAANFVSWLILPKNAVS-VGASGAVFGLFAISVLV 216
+ Y+ +G A + P + V VGASGA+ G+ +L+
Sbjct: 99 PFLIFYLVSGVGAGLLHIASAPDSLVPLVGASGAIAGVMGGYLLL 143
>gi|229159403|ref|ZP_04287423.1| Rhomboid [Bacillus cereus R309803]
gi|228624070|gb|EEK80876.1| Rhomboid [Bacillus cereus R309803]
Length = 182
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 60/129 (46%), Gaps = 8/129 (6%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T+ H + H SN L++ G +E + G+F + + +G N +++I+P
Sbjct: 47 WWRLITSLLVHVDLQHFLSNSICLFVLGSSIERQLGHFSFIIIFFLSGILGNLSTYIIMP 106
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWRK-------ILEVLILGQFVVEKVMEAAQASA 247
+ GASG +FGL + + S +R I ++I + +A +
Sbjct: 107 LEYIHAGASGGIFGLLGAHLFLLYS-RYRSSNPRDIAIFSIMIFILLLFTFFNPSANPIS 165
Query: 248 GMSGTFIGG 256
++G IGG
Sbjct: 166 HLTGLIIGG 174
>gi|357412396|ref|YP_004924132.1| rhomboid family protein [Streptomyces flavogriseus ATCC 33331]
gi|320009765|gb|ADW04615.1| Rhomboid family protein [Streptomyces flavogriseus ATCC 33331]
Length = 300
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 58/99 (58%), Gaps = 2/99 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ VT+ F H H++ N+ L+ G +E G Y+ +G A + +++LI
Sbjct: 136 WYRLVTSTFLHQEVWHIAFNMLGLWWLGGPLESALGRARYLALYLLSGLAGSALTYLIAD 195
Query: 195 KNAVSVGASGAVFGLF-AISVLV-KMSWDWRKILEVLIL 231
++GASG+VFGL A +VL+ +M++D R ++ +L++
Sbjct: 196 PAQGTLGASGSVFGLLGATAVLMRRMNYDMRPVIALLVV 234
>gi|154252333|ref|YP_001413157.1| rhomboid family protein [Parvibaculum lavamentivorans DS-1]
gi|154156283|gb|ABS63500.1| Rhomboid family protein [Parvibaculum lavamentivorans DS-1]
Length = 246
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 133 PAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLI 192
PAW +T+ F H HL N+ +L+IFG +E G L YI G AA L+
Sbjct: 65 PAWATVITSMFMHGGLAHLGGNMLYLWIFGDNIELAMGRLRFILFYIVCGVAAALSHALL 124
Query: 193 LPKNAVS-VGASGAVFGLFAISVLV 216
+P + V VGASGA+ G+ +L+
Sbjct: 125 VPASTVPLVGASGAISGVLGAYLLL 149
>gi|409356388|ref|ZP_11234775.1| putative membrane-bound rhomboid protease [Dietzia alimentaria 72]
Length = 244
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 77/160 (48%), Gaps = 20/160 (12%)
Query: 103 WIILLNLGLYVADHVFQVRSI-----------KSLY--LYHNFPAWYQFVTAAFCHANWN 149
W+I NL +YVA V Q RS +LY L W++ +T+AF H
Sbjct: 23 WLIAANLAVYVAT-VVQARSFLDNRASALFEFTALYPPLVAFRDEWWRLLTSAFQHFGPM 81
Query: 150 HLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGL 209
HL N++ L++ G +E G+ +L+ A V+ + +NA++ GASGA+FGL
Sbjct: 82 HLLLNMYMLWLLGIGIERSVGH-ARYLAMYLVSALGGSVAVMFFSQNALTAGASGAIFGL 140
Query: 210 FAISVLVKMSW--DWRKILEVLILG---QFVVEKVMEAAQ 244
+V M+ D R I +L+L F+V + AA
Sbjct: 141 MGAYAIVAMTMRVDVRGIGILLVLNVGVSFIVPGISLAAH 180
>gi|345016871|ref|YP_004819224.1| rhomboid family protein [Thermoanaerobacter wiegelii Rt8.B1]
gi|344032214|gb|AEM77940.1| Rhomboid family protein [Thermoanaerobacter wiegelii Rt8.B1]
Length = 227
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 73/150 (48%), Gaps = 8/150 (5%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
Y F+T+ F H N HL SN++ L++FG VE+ G+ ++ YI +G A + P
Sbjct: 69 YPFITSMFLHGNTFHLISNMWILWLFGDNVEDRMGHIRFFIFYILSGVIAGVFHLVFNPI 128
Query: 196 NAVS-VGASGAVFG-------LFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASA 247
+ V VGASGA+ G LF + ++ + + + L + V + Q +
Sbjct: 129 SPVPVVGASGAIAGVMGAYFVLFPSARIITLVPTFFLVPVFLPIPAVVYLFLWFLTQLYS 188
Query: 248 GMSGTFIGGYSVQSINHIAHLSGALFGVFL 277
G + IGG +V I AH+ G + GV L
Sbjct: 189 GTVYSAIGGTTVGGIAWWAHIGGFISGVLL 218
>gi|319948114|ref|ZP_08022278.1| rhomboid family protein [Dietzia cinnamea P4]
gi|319438225|gb|EFV93181.1| rhomboid family protein [Dietzia cinnamea P4]
Length = 244
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 67/133 (50%), Gaps = 21/133 (15%)
Query: 103 WIILLNLGLYVADHVFQVRSI---KSLYLYHN---FP-------AWYQFVTAAFCHANWN 149
W+I NL +YVA Q RSI + L+ FP W++ +T+AF H
Sbjct: 23 WLITANLAVYVATAA-QARSIMANSASALFETTALFPPMVAVRDEWWRLLTSAFQHFGPM 81
Query: 150 HLSSNLFFLYIFGKLVEEEEGN---FGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAV 206
HL N++ L+I G +E G+ GL+L G+ V+ + +NA++ GASGA+
Sbjct: 82 HLLLNMYMLWILGLGIERSIGHARFLGLYLVSALGGS----VAVMFTSQNALTAGASGAI 137
Query: 207 FGLFAISVLVKMS 219
FGL +V MS
Sbjct: 138 FGLMGAYAIVAMS 150
>gi|343523357|ref|ZP_08760319.1| peptidase, S54 family [Actinomyces sp. oral taxon 175 str. F0384]
gi|343400513|gb|EGV13031.1| peptidase, S54 family [Actinomyces sp. oral taxon 175 str. F0384]
Length = 284
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 15/155 (9%)
Query: 78 DMISQLELDKPEERRKPKKSVNGVFWIILLNLGLYVADHVFQVR----SIKSLYLYHNF- 132
D Q + + + R +V + + +GL V + QV +++SL L F
Sbjct: 50 DCARQSQAGRRQARTLLGGNVTSGALVTKILVGLCVVVYALQVLIPEVTMQSLELRLGFV 109
Query: 133 PAW-----YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTG-AAAN 186
PA ++F+T AF HAN+ HL N++ L++ G +E G + Y+ + +
Sbjct: 110 PALAVYEPWRFLTTAFLHANYMHLGFNMWALWVLGGALEPLLGRWRFTCVYLLSALGGST 169
Query: 187 FVSWLILPKN----AVSVGASGAVFGLFAISVLVK 217
+ WL P ++VGASGAVFGLF+ +V+
Sbjct: 170 MIYWLSWPDTESWLTLTVGASGAVFGLFSAMFIVQ 204
>gi|341819922|emb|CCC56137.1| s54 family peptidase [Weissella thailandensis fsh4-2]
Length = 225
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 66/139 (47%), Gaps = 14/139 (10%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +TA F H HL N+ LY G+L+E+ G+ ++ YI + S
Sbjct: 59 WWRMITAGFLHVTLMHLVLNMITLYYVGRLLEQYFGSVRYFIGYIAAVGLGSLNSLAFGS 118
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWRK--ILEVLILGQFVVEKVMEAAQASAGMSGT 252
NA+S GASG +FGLF + L+ + D + + + LG FV+ ++
Sbjct: 119 ANAISAGASGGIFGLFGMIFLMGL-LDKQGFWLAQAKTLGLFVILSLIPV---------- 167
Query: 253 FIGGYSVQSINHIAHLSGA 271
IGG ++ HI L+G
Sbjct: 168 -IGGSNIAISAHIGGLAGG 185
>gi|150397729|ref|YP_001328196.1| rhomboid family protein [Sinorhizobium medicae WSM419]
gi|150029244|gb|ABR61361.1| Rhomboid family protein [Sinorhizobium medicae WSM419]
Length = 263
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 133 PAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLI 192
P + F+T +F H + +HL+ N+ FL++FG VE+ G+F + Y+ AA F L+
Sbjct: 71 PDGFTFLTYSFLHGDLSHLAMNMLFLWVFGDNVEDALGHFRFLVFYLLCAAAGAFAHGLL 130
Query: 193 -LPKNAVSVGASGAVFGLFA 211
L A +GASGA+ G+ A
Sbjct: 131 DLASEAPLIGASGAISGVVA 150
>gi|42519493|ref|NP_965423.1| hypothetical protein LJ1618 [Lactobacillus johnsonii NCC 533]
gi|385826288|ref|YP_005862630.1| hypothetical protein [Lactobacillus johnsonii DPC 6026]
gi|417837977|ref|ZP_12484215.1| GlpG protein [Lactobacillus johnsonii pf01]
gi|41583781|gb|AAS09389.1| hypothetical protein LJ_1618 [Lactobacillus johnsonii NCC 533]
gi|329667732|gb|AEB93680.1| hypothetical protein LJP_1358c [Lactobacillus johnsonii DPC 6026]
gi|338761520|gb|EGP12789.1| GlpG protein [Lactobacillus johnsonii pf01]
Length = 228
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 47/85 (55%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ TA F H W H++SN +Y G+ +E G++ Y+ +G N +S+
Sbjct: 58 WWRLFTAQFLHIGWLHIASNAVMIYYMGQFMEPLLGHWRFLTVYLLSGIGGNLLSYAYGS 117
Query: 195 KNAVSVGASGAVFGLFAISVLVKMS 219
+ VS GAS A+FGLF + + + ++
Sbjct: 118 DSVVSAGASTALFGLFGVVIALYLA 142
>gi|333445938|ref|ZP_08480880.1| membrane-associated serine protease [Leuconostoc inhae KCTC 3774]
Length = 174
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 66/131 (50%), Gaps = 7/131 (5%)
Query: 132 FPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWL 191
+ +++ VT F HA H+ +N+ L+ G + EE G+ Y+F G N +S+L
Sbjct: 2 YDQYWRLVTPLFLHAGVMHILTNMLTLWFIGPIAEETFGSRKFLGLYLFGGIVGNIMSYL 61
Query: 192 ILPKNAVSVGASGAVFGLFAISVL--VKMSWDWRKILEVLILGQFVVEKVMEAAQASA-- 247
P VSVGAS A+FG+F +L V+ D R + ++G FVV +M ++
Sbjct: 62 FAPLT-VSVGASSALFGMFGGLILYAVQFKHDSRIRAQGTMMGLFVVLNLMSGFFSTGID 120
Query: 248 --GMSGTFIGG 256
G G IGG
Sbjct: 121 MWGHIGGLIGG 131
>gi|32477493|ref|NP_870487.1| hypothetical protein RB12400 [Rhodopirellula baltica SH 1]
gi|32448047|emb|CAD77564.1| conserved hypothetical protein [Rhodopirellula baltica SH 1]
Length = 451
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 81/169 (47%), Gaps = 19/169 (11%)
Query: 119 QVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSY 178
++ +++S L + Q+VT+AF HA HL N+FFL+ FG +VE + G + L Y
Sbjct: 43 ELETLESFALSYETINPIQWVTSAFLHAGPFHLMGNMFFLWAFGLIVEGKVGAWKFLLIY 102
Query: 179 IFTGAAANFVS---WLILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILE-VLILGQF 234
+ V L+L S+GAS AVFGL I+++ W +E VLI G F
Sbjct: 103 LGIAVGECVVEQLMMLVLVGEGYSLGASSAVFGLMTIALI----WAPENDVECVLIFGLF 158
Query: 235 VVEKVM--EAAQASAGM-------SGTFIGGYSVQSINHIAHLSGALFG 274
++ + + E + M F G+SV S + H+ GA G
Sbjct: 159 LLIRALAFELKVVTLAMLFLFLQVVEMFFAGFSVSS--GLLHMLGAFVG 205
>gi|374854619|dbj|BAL57496.1| rhomboid family protein [uncultured Chloroflexi bacterium]
Length = 227
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 76/152 (50%), Gaps = 11/152 (7%)
Query: 134 AWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLIL 193
+W+ ++ F H W HL SN++ L+IFG VE+ G+ L Y+ +G AA + ++
Sbjct: 60 SWHTIFSSMFLHGGWFHLLSNMWILFIFGDNVEDRLGHARYLLFYLLSGVAAALLQAFLM 119
Query: 194 PKNAVS-VGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQ------AS 246
P + V VGASGA+ G+ +++ + + +I+ ++ F+ + A S
Sbjct: 120 PLSRVPMVGASGAIAGILGAYMIL---FPYSRIVSLIPFFFFLTTAEIPAVIYLGFWFLS 176
Query: 247 AGMSGTF-IGGYSVQSINHIAHLSGALFGVFL 277
SG F + G I AH+ G LFG+ +
Sbjct: 177 QLYSGLFSLAGAPASGIAWWAHIGGFLFGLLM 208
>gi|239617776|ref|YP_002941098.1| Rhomboid family protein [Kosmotoga olearia TBF 19.5.1]
gi|239506607|gb|ACR80094.1| Rhomboid family protein [Kosmotoga olearia TBF 19.5.1]
Length = 236
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
+ FVT+ F H W H+ N++ L++FG VE+ G+F L Y+ G AAN +L+ P
Sbjct: 76 FPFVTSIFLHGGWTHIIGNMWTLWVFGDNVEDRLGHFRFLLYYLSWGIAANLFQFLVAPI 135
Query: 196 NAVS-VGASGAVFGL 209
++ +GASGA+ G+
Sbjct: 136 SSTPIIGASGAIAGV 150
>gi|410085331|ref|ZP_11282050.1| Protein aarA [Morganella morganii SC01]
gi|421492312|ref|ZP_15939673.1| hypothetical protein MU9_0840 [Morganella morganii subsp. morganii
KT]
gi|455738629|ref|YP_007504895.1| Protein aarA [Morganella morganii subsp. morganii KT]
gi|400193468|gb|EJO26603.1| hypothetical protein MU9_0840 [Morganella morganii subsp. morganii
KT]
gi|409768040|gb|EKN52104.1| Protein aarA [Morganella morganii SC01]
gi|455420192|gb|AGG30522.1| Protein aarA [Morganella morganii subsp. morganii KT]
Length = 292
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 21/136 (15%)
Query: 101 VFWIILLNLGLYV---------ADHVFQVR-SIKSLYLYHNFPAWYQFVTAAFCHANWNH 150
F++ LLN G+Y+ AD V+ + + S+Y W++++T+ H++ H
Sbjct: 26 TFFLALLNTGVYIWQVNYASPLADQVYNMLLAGGSVYQLSLTGDWWRYITSILLHSDPFH 85
Query: 151 LSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVS--WLILPKN---------AVS 199
L NL L +FG E G + Y+FTG +A+F S W + V
Sbjct: 86 LGVNLIALLVFGINCEALTGKMRMLFIYLFTGISASFASALWQATQNDMSPLSGIPVTVG 145
Query: 200 VGASGAVFGLFAISVL 215
VGASGA+ GL +V+
Sbjct: 146 VGASGAIMGLAGTTVM 161
>gi|452974258|gb|EME74079.1| transmembrane protein YdcA [Bacillus sonorensis L12]
Length = 199
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 41/78 (52%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ VT F HA ++HL N L++F +E G YI +G N ++ I P
Sbjct: 58 WWRLVTPVFIHAGFSHLLFNSMSLFLFAPALERMMGKLRFLAVYIGSGVIGNIGTYFIEP 117
Query: 195 KNAVSVGASGAVFGLFAI 212
VGASGA+FGLF +
Sbjct: 118 PEYTHVGASGAIFGLFGV 135
>gi|398808520|ref|ZP_10567383.1| putative membrane protein [Variovorax sp. CF313]
gi|398087552|gb|EJL78138.1| putative membrane protein [Variovorax sp. CF313]
Length = 471
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 78/161 (48%), Gaps = 29/161 (18%)
Query: 131 NFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGA--AANFV 188
F W ++TAAF H + HL N+ FL++FG VE G G +LS+ GA A+
Sbjct: 130 EFKPW-TWITAAFLHGSTGHLLGNMLFLFLFGFSVELALGR-GTYLSFYLLGAVGASALA 187
Query: 189 SWLILPKNAVSVGASGAV---FGLFAISVLVKM---------SWDWRKILEVLILGQFVV 236
W K+ +GASGA+ G++A+ +K +++ +L+L ++V
Sbjct: 188 GWAYAGKDGYGLGASGAISALMGMYAVMYRLKRIRFFYQLFFYFNYVTAPALLLLPAWIV 247
Query: 237 EKVMEAAQASAGMSGTFIGGYSVQSINHIAHLSGALFGVFL 277
++M+ ++GG Q I ++AHL G L G L
Sbjct: 248 NELMQ----------HWLGG---QGIAYMAHLGGLLTGAAL 275
>gi|418476663|ref|ZP_13045815.1| hypothetical protein SMCF_8893 [Streptomyces coelicoflavus ZG0656]
gi|371542672|gb|EHN71698.1| hypothetical protein SMCF_8893 [Streptomyces coelicoflavus ZG0656]
Length = 297
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 56/99 (56%), Gaps = 2/99 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ +TA F H + H+ N+ L+ G +E G Y +G A + +++LI
Sbjct: 134 WYRLLTAMFLHTGYMHILFNMLSLWWLGGPLEGALGRARYLALYFCSGLAGSALTYLIAE 193
Query: 195 KNAVSVGASGAVFGLF-AISVLV-KMSWDWRKILEVLIL 231
N S+GASGA+FGLF A + LV +++ D R ++ +L +
Sbjct: 194 PNQPSLGASGAIFGLFGATATLVRRLNADMRPVVILLAI 232
>gi|227889556|ref|ZP_04007361.1| S54 family peptidase [Lactobacillus johnsonii ATCC 33200]
gi|227849858|gb|EEJ59944.1| S54 family peptidase [Lactobacillus johnsonii ATCC 33200]
Length = 228
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ TA F H W H++SN +Y G+ +E G++ Y+ +G N +S+
Sbjct: 58 WWRLFTAQFLHIGWLHIASNAVMIYYMGQFMEPLLGHWRFLTVYLLSGIGGNLLSYAYGS 117
Query: 195 KNAVSVGASGAVFGLFAISV 214
+ VS GAS A+FGLF + +
Sbjct: 118 DSVVSAGASTALFGLFGVVI 137
>gi|254478647|ref|ZP_05092019.1| peptidase, S54 (rhomboid) family [Carboxydibrachium pacificum DSM
12653]
gi|214035423|gb|EEB76125.1| peptidase, S54 (rhomboid) family [Carboxydibrachium pacificum DSM
12653]
Length = 227
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 72/150 (48%), Gaps = 8/150 (5%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
Y F+T+ F H N HL SN++ L++FG VE+ G+ + YI +G A + P
Sbjct: 69 YPFITSMFLHGNIFHLISNMWILWLFGDNVEDRMGHIRFLIFYILSGVIAGVFHLVFNPI 128
Query: 196 NAVS-VGASGAVFG-------LFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASA 247
+ V VGASGA+ G LF + ++ + + + L + V + Q +
Sbjct: 129 SPVPVVGASGAIAGVMGAYFVLFPSARIITLVPSFFLVPVFLPIPAVVYLFLWFLTQLYS 188
Query: 248 GMSGTFIGGYSVQSINHIAHLSGALFGVFL 277
G + IGG +V I AH+ G + GV L
Sbjct: 189 GTVYSVIGGTTVGGIAWWAHIGGFISGVLL 218
>gi|440717660|ref|ZP_20898142.1| Peptidase S54, rhomboid [Rhodopirellula baltica SWK14]
gi|436437280|gb|ELP30936.1| Peptidase S54, rhomboid [Rhodopirellula baltica SWK14]
Length = 451
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 81/170 (47%), Gaps = 19/170 (11%)
Query: 118 FQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLS 177
++ +++S L + Q+VT+AF HA HL N+FFL+ FG +VE + G + L
Sbjct: 42 IELETLESFALSYETINPIQWVTSAFLHAGPFHLMGNMFFLWAFGLIVEGKVGAWKFLLI 101
Query: 178 YIFTGAAANFVS---WLILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILE-VLILGQ 233
Y+ V L+L S+GAS AVFGL I+++ W +E VLI G
Sbjct: 102 YLGIAVGECVVEQLMMLVLVGEGYSLGASSAVFGLMTIALI----WAPENDVECVLIFGL 157
Query: 234 FVVEKVM--EAAQASAGM-------SGTFIGGYSVQSINHIAHLSGALFG 274
F++ + + E + M F G+SV S + H+ GA G
Sbjct: 158 FLLIRALAFELKVVTLAMLFLFLQVVEMFFAGFSVSS--GLLHMLGAFVG 205
>gi|212638734|ref|YP_002315254.1| serine protease of Rhomboid family, contains TPR repeats
[Anoxybacillus flavithermus WK1]
gi|212560214|gb|ACJ33269.1| Serine protease of Rhomboid family, contains TPR repeats
[Anoxybacillus flavithermus WK1]
Length = 517
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++F T H + HL N F LY G LVE+ G+ Y+F G A + S+L P
Sbjct: 233 WWRFFTPIVLHIGFVHLFMNTFALYYLGPLVEKLYGSLRFLFIYLFAGFAGSLASFLFSP 292
Query: 195 KNAVSVGASGAVFGLFA 211
+VS GASGA+FG F
Sbjct: 293 --SVSAGASGAIFGCFG 307
>gi|256847477|ref|ZP_05552923.1| rhomboid family protein [Lactobacillus coleohominis 101-4-CHN]
gi|256716141|gb|EEU31116.1| rhomboid family protein [Lactobacillus coleohominis 101-4-CHN]
Length = 220
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +TA F H HL N+ LY G VE G++ + + Y+ + + N S ++ P
Sbjct: 53 WWRLLTAGFLHIGIQHLVINMLTLYFLGMYVETLFGHWRMLVIYLVSVVSGNLFSMVMQP 112
Query: 195 KNAVSVGASGAVFGLFA 211
N+VS GAS +FGLF
Sbjct: 113 VNSVSAGASTGLFGLFG 129
>gi|309803097|ref|ZP_07697194.1| peptidase, S54 family [Lactobacillus iners LactinV 11V1-d]
gi|309806110|ref|ZP_07700129.1| peptidase, S54 family [Lactobacillus iners LactinV 03V1-b]
gi|329920170|ref|ZP_08277001.1| peptidase, S54 family [Lactobacillus iners SPIN 1401G]
gi|349611504|ref|ZP_08890739.1| hypothetical protein HMPREF1027_00166 [Lactobacillus sp. 7_1_47FAA]
gi|308164605|gb|EFO66855.1| peptidase, S54 family [Lactobacillus iners LactinV 11V1-d]
gi|308167465|gb|EFO69625.1| peptidase, S54 family [Lactobacillus iners LactinV 03V1-b]
gi|328936624|gb|EGG33068.1| peptidase, S54 family [Lactobacillus iners SPIN 1401G]
gi|348608597|gb|EGY58577.1| hypothetical protein HMPREF1027_00166 [Lactobacillus sp. 7_1_47FAA]
Length = 232
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 12/143 (8%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+++ TA F HA + H+ N+ +Y FG +E+ G+ Y+ +G N +S+ +
Sbjct: 62 FWRLFTAQFIHAGFFHIICNIVMIYFFGMFLEQFLGHIRYLTIYLLSGVGGNLLSFALGQ 121
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFI 254
N +S GAS AVFGL SVL + I+ V+I QA + +
Sbjct: 122 DNVISCGASTAVFGLMG-SVLALYFLNNDNIIAVII-----------GRQAFLLLICNIV 169
Query: 255 GGYSVQSINHIAHLSGALFGVFL 277
+ + S++ I H+ G + G L
Sbjct: 170 VDFFMPSVDIIGHIGGTITGFLL 192
>gi|424814207|ref|ZP_18239385.1| uncharacterized membrane protein, rhomboid family [Candidatus
Nanosalina sp. J07AB43]
gi|339757823|gb|EGQ43080.1| uncharacterized membrane protein, rhomboid family [Candidatus
Nanosalina sp. J07AB43]
Length = 218
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++F T+ F H++ HL++NLFF+ +FG + + W +++ + AN +++ P
Sbjct: 38 WWKFFTSFFGHSDIEHLTNNLFFIGLFGTIYSLVTSSKNFWTTFLISAVGANLTAFIFYP 97
Query: 195 KNAVSVGASGAVFGLFAISVLVK 217
N+V VGASG GL + + K
Sbjct: 98 -NSVIVGASGGAMGLLSALTVYK 119
>gi|166033079|ref|ZP_02235908.1| hypothetical protein DORFOR_02801 [Dorea formicigenerans ATCC
27755]
gi|166027436|gb|EDR46193.1| peptidase, S54 family [Dorea formicigenerans ATCC 27755]
Length = 199
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 70/150 (46%), Gaps = 16/150 (10%)
Query: 131 NFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVS- 189
N +Y +T+ F H ++HL +N+ L + G +E E G L Y+ +G N VS
Sbjct: 50 NGERYYTLITSMFLHFGFSHLMNNMVMLLVIGYSLEPEIGKIRFLLIYLGSGLMGNLVSA 109
Query: 190 WLILPKN--AVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASA 247
W + + AVS GASGA+FG+ + V + R V E A
Sbjct: 110 WFDVSQGSYAVSAGASGAIFGIVGALLYVAIRNHGR-----------VGEISTRGLVLMA 158
Query: 248 GMSGTFIGGYSVQSINHIAHLSGALFGVFL 277
G+S + G++ Q +++ AH+ G + G L
Sbjct: 159 GLSLYY--GFTAQGVDNAAHIGGLVSGFLL 186
>gi|302336842|ref|YP_003802048.1| rhomboid family protein [Spirochaeta smaragdinae DSM 11293]
gi|301634027|gb|ADK79454.1| Rhomboid family protein [Spirochaeta smaragdinae DSM 11293]
Length = 214
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 94/211 (44%), Gaps = 36/211 (17%)
Query: 85 LDKPEERRKP--KKSVNGVFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPA-------W 135
+D R+P + N F II++N+ +V F S +S Y P +
Sbjct: 1 MDNRSIIRRPFRYRYYNAAFGIIIVNIVFFV----FNTISPQSRYYTALIPGLIIGKGFY 56
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP- 194
+QF T F HAN +H+ N+ L+ FG VE G+ L Y+ TG A S+++
Sbjct: 57 WQFFTYMFTHANISHIFFNMLGLFFFGTQVERRIGSSEFLLFYLLTGFLAGLFSFIVYTL 116
Query: 195 ---KNAVSVGASGAVFG-LFAISVLVKMSWDW-RKILEV----LILGQFVVEKVMEAAQA 245
AV +GASGA+F L A +V + + I+ V L++G +E +
Sbjct: 117 TGMYGAVLLGASGAIFAVLLAFAVYFPYANIYIMGIIPVKAPLLVIGYTAIELFSQLLSI 176
Query: 246 SAGMSGTFIGGYSVQSINHIAHLSGALFGVF 276
++G++ H+ HL+G +F F
Sbjct: 177 NSGVA-------------HLTHLAGFVFAFF 194
>gi|423480374|ref|ZP_17457064.1| hypothetical protein IEQ_00152 [Bacillus cereus BAG6X1-2]
gi|401148766|gb|EJQ56251.1| hypothetical protein IEQ_00152 [Bacillus cereus BAG6X1-2]
Length = 197
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 42/77 (54%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T+ H + H SN L++ G +E++ G+F + + +G N S++I+P
Sbjct: 47 WWRVITSLLVHVDLQHFLSNSICLFVLGSSIEKQLGHFSFIIIFFLSGILGNISSYIIMP 106
Query: 195 KNAVSVGASGAVFGLFA 211
+ GASG +FGL
Sbjct: 107 LEYIHAGASGGIFGLLG 123
>gi|407708174|ref|YP_006831759.1| alpha-glucosidase [Bacillus thuringiensis MC28]
gi|407385859|gb|AFU16360.1| Rhomboid [Bacillus thuringiensis MC28]
Length = 190
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T+ H + H SN L+I G +E++ G+ + + G + N S++I+P
Sbjct: 47 WWRVITSLLVHVDLQHFLSNSICLFILGSSIEKQLGHISFIILFFLPGISGNIASYIIMP 106
Query: 195 KNAVSVGASGAVFGLFA 211
+ GASG +FGL
Sbjct: 107 PEYIHAGASGGIFGLLG 123
>gi|427728826|ref|YP_007075063.1| hypothetical protein Nos7524_1591 [Nostoc sp. PCC 7524]
gi|427364745|gb|AFY47466.1| putative membrane protein [Nostoc sp. PCC 7524]
Length = 239
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
Query: 133 PAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLI 192
P W +++ F H HL+ N+ FL+IFG VEE+ G+ L Y+ G A+ W
Sbjct: 67 PEWATLISSQFLHGGLLHLAGNMLFLWIFGNNVEEKLGHAKYLLFYLSCGVLASLAQWFF 126
Query: 193 L-PKNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQF 234
N S+GASGA+ G+ +L + +IL VL LG F
Sbjct: 127 AQDSNIPSLGASGAIAGVMGAYIL---RFPQAEILGVLPLGLF 166
>gi|323694355|ref|ZP_08108528.1| rhomboid protease GluP [Clostridium symbiosum WAL-14673]
gi|323501595|gb|EGB17484.1| rhomboid protease GluP [Clostridium symbiosum WAL-14673]
Length = 209
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 69/149 (46%), Gaps = 16/149 (10%)
Query: 132 FPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWL 191
+ +Y+ +T+ F H HL +N+ L++ G +E G + Y+ G AN +S
Sbjct: 51 YGEYYRLLTSVFMHFGIGHLINNMLVLFVLGDNLERALGKVKYLIFYLLCGIGANIISLA 110
Query: 192 ILPKNA---VSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAG 248
+ VS GASGA+FG+ + LV R LE L Q ++ +
Sbjct: 111 VNMGRGYYVVSAGASGAIFGV--VGGLVYAVAVNRGRLEDLSTQQLMILVAV-------- 160
Query: 249 MSGTFIGGYSVQSINHIAHLSGALFGVFL 277
T G++ ++++AH+ G L G+FL
Sbjct: 161 ---TLYHGFTSTGVDNVAHVGGLLIGIFL 186
>gi|149914332|ref|ZP_01902863.1| rhomboid family protein [Roseobacter sp. AzwK-3b]
gi|149811851|gb|EDM71684.1| rhomboid family protein [Roseobacter sp. AzwK-3b]
Length = 248
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W T+ F H W HL+ N+ FL+IFG +E+E G+ G Y+ +G A + P
Sbjct: 61 WSTMATSMFLHGGWMHLAGNMLFLWIFGDNLEDEMGHLGYLAFYLASGIGAAAAHMISAP 120
Query: 195 KNAV-SVGASGAVFGLFAISVLV 216
+ V +VGASGA+ G+ +L+
Sbjct: 121 YSPVPTVGASGAIAGVMGGYLLM 143
>gi|240103462|ref|YP_002959771.1| peptidase [Thermococcus gammatolerans EJ3]
gi|239911016|gb|ACS33907.1| Peptidase, putative, Rhomboid-like protein protein [Thermococcus
gammatolerans EJ3]
Length = 207
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 69/141 (48%), Gaps = 18/141 (12%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ TA F H +W HL+ N FFL G +E G + + YI G N +S ++
Sbjct: 61 WWRLFTAMFVHLSWIHLAMNTFFLIYLGSQLELFVGRWRYLILYITAGLFGNVLSVALMD 120
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFI 254
+S GASGA+FG I LI+ + +++K +++A A+A F+
Sbjct: 121 PYTISGGASGALFG----------------IAGALIMIEGILKKNIQSALANAFF--LFL 162
Query: 255 GGYSVQSINHIAHLSGALFGV 275
+ +N IAHL G L G+
Sbjct: 163 INSWMPHVNAIAHLGGLLVGI 183
>gi|423381726|ref|ZP_17359009.1| hypothetical protein IC9_05078 [Bacillus cereus BAG1O-2]
gi|423444417|ref|ZP_17421322.1| hypothetical protein IEA_04746 [Bacillus cereus BAG4X2-1]
gi|423450246|ref|ZP_17427124.1| hypothetical protein IEC_04853 [Bacillus cereus BAG5O-1]
gi|423467851|ref|ZP_17444619.1| hypothetical protein IEK_05038 [Bacillus cereus BAG6O-1]
gi|423537252|ref|ZP_17513670.1| hypothetical protein IGI_05084 [Bacillus cereus HuB2-9]
gi|423542979|ref|ZP_17519367.1| hypothetical protein IGK_05068 [Bacillus cereus HuB4-10]
gi|423543714|ref|ZP_17520072.1| hypothetical protein IGO_00149 [Bacillus cereus HuB5-5]
gi|423620162|ref|ZP_17595993.1| hypothetical protein IIO_05485 [Bacillus cereus VD115]
gi|423626831|ref|ZP_17602606.1| hypothetical protein IK3_05426 [Bacillus cereus VD148]
gi|401126254|gb|EJQ33998.1| hypothetical protein IEC_04853 [Bacillus cereus BAG5O-1]
gi|401167094|gb|EJQ74388.1| hypothetical protein IGK_05068 [Bacillus cereus HuB4-10]
gi|401186996|gb|EJQ94072.1| hypothetical protein IGO_00149 [Bacillus cereus HuB5-5]
gi|401248887|gb|EJR55206.1| hypothetical protein IIO_05485 [Bacillus cereus VD115]
gi|401250186|gb|EJR56488.1| hypothetical protein IK3_05426 [Bacillus cereus VD148]
gi|401628653|gb|EJS46487.1| hypothetical protein IC9_05078 [Bacillus cereus BAG1O-2]
gi|402411099|gb|EJV43475.1| hypothetical protein IEA_04746 [Bacillus cereus BAG4X2-1]
gi|402412288|gb|EJV44648.1| hypothetical protein IEK_05038 [Bacillus cereus BAG6O-1]
gi|402459704|gb|EJV91440.1| hypothetical protein IGI_05084 [Bacillus cereus HuB2-9]
Length = 190
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T+ H + H SN L+I G +E++ G+ + + G + N S++I+P
Sbjct: 47 WWRVITSLLVHVDLQHFLSNSICLFILGSSIEKQLGHISFIILFFLPGISGNIASYIIMP 106
Query: 195 KNAVSVGASGAVFGLFA 211
+ GASG +FGL
Sbjct: 107 PEYIHTGASGGIFGLLG 123
>gi|75908329|ref|YP_322625.1| rhomboid-like protein [Anabaena variabilis ATCC 29413]
gi|75702054|gb|ABA21730.1| Rhomboid-like protein [Anabaena variabilis ATCC 29413]
Length = 239
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 60/114 (52%), Gaps = 4/114 (3%)
Query: 122 SIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFT 181
S + ++ P W +T+ F H + HL+ N+ FL+IFG VEE+ G+ L Y+
Sbjct: 56 SFAGVSVHQPVPEWATLITSQFLHGGFLHLAGNMLFLWIFGNNVEEKLGHARYLLFYLAC 115
Query: 182 GAAANFVSWLILPKNAV-SVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQF 234
G A+ W +++ S+GASGA+ G+ +L + +IL V+ LG F
Sbjct: 116 GVLASLTQWYFSQDSSIPSLGASGAIAGVMGAYIL---RFPNAEILGVVPLGFF 166
>gi|404425001|ref|ZP_11006516.1| rhomboid family protein [Mycobacterium fortuitum subsp. fortuitum
DSM 46621]
gi|403649659|gb|EJZ05001.1| rhomboid family protein [Mycobacterium fortuitum subsp. fortuitum
DSM 46621]
Length = 240
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 2/102 (1%)
Query: 132 FPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWL 191
+ +Y+ VT+AF H HL N++ LY+ G +E+ G Y + + + +L
Sbjct: 65 YDQYYRLVTSAFLHYGVMHLLFNMWALYVVGPPLEQWLGRLRYGALYALSALGGSVLVYL 124
Query: 192 ILPKNAVSVGASGAVFGLFAISVLV--KMSWDWRKILEVLIL 231
+ P N + GASGA+FGLF +V K++ D R I V+I+
Sbjct: 125 LTPINTPTAGASGAIFGLFGAIFVVARKLNLDVRMIAAVVII 166
>gi|302911024|ref|XP_003050402.1| hypothetical protein NECHADRAFT_63508 [Nectria haematococca mpVI
77-13-4]
gi|256731339|gb|EEU44689.1| hypothetical protein NECHADRAFT_63508 [Nectria haematococca mpVI
77-13-4]
Length = 569
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++F+T+ F HA H+ NL GK +E G L YI G N + P
Sbjct: 333 WFRFITSIFLHAGVVHILFNLLVQLTIGKDMERAIGPVRFLLVYISAGIFGNIMGGNYAP 392
Query: 195 KNAVSVGASGAVFGLFAISVLVKM-SWDWRK 224
S+GASGA+FG+ A+++L + SW RK
Sbjct: 393 PGYASMGASGAIFGIIALTLLDLLYSWKDRK 423
>gi|326391303|ref|ZP_08212843.1| Rhomboid family protein [Thermoanaerobacter ethanolicus JW 200]
gi|325992632|gb|EGD51084.1| Rhomboid family protein [Thermoanaerobacter ethanolicus JW 200]
Length = 227
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 72/150 (48%), Gaps = 8/150 (5%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
Y F+T+ F H N HL SN++ L++FG VE+ G+ + YI +G A + P
Sbjct: 69 YPFITSMFLHGNTFHLISNMWILWLFGDNVEDRMGHIRFLIFYILSGVIAGVFHLVFNPI 128
Query: 196 NAVS-VGASGAVFG-------LFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASA 247
+ V VGASGA+ G LF + ++ + + + L + V + Q +
Sbjct: 129 SPVPVVGASGAIAGVMGAYFILFPSARIITLVPTFFLVPVFLPIHAVVYLFLWFLTQLYS 188
Query: 248 GMSGTFIGGYSVQSINHIAHLSGALFGVFL 277
G + IGG +V I AH+ G + GV L
Sbjct: 189 GTVYSVIGGTTVGGIAWWAHIGGFISGVLL 218
>gi|443325695|ref|ZP_21054378.1| putative membrane protein [Xenococcus sp. PCC 7305]
gi|442794698|gb|ELS04102.1| putative membrane protein [Xenococcus sp. PCC 7305]
Length = 237
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 72/166 (43%), Gaps = 32/166 (19%)
Query: 133 PAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLI 192
P +++ F HA + H+ N+ FLYIFG +EE+ G Y+ G A W
Sbjct: 67 PEVMTLISSQFLHAGFAHIGFNMLFLYIFGNNIEEQLGRLKYLCFYLICGVLAGLAQWYF 126
Query: 193 LP-KNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQF---------------VV 236
N S+GASGA+ G+ +L + KI+ ++ LG F +
Sbjct: 127 SEMSNIPSLGASGAIAGVMGAYIL---KFPRAKIVTIIPLGFFFPLFRIPALYFLGFWFL 183
Query: 237 EKVMEA-----AQASAGMSGTFIGGYSVQSINHIAHLSGALFGVFL 277
E+ QAS GM+ GG + + AH+ G +FGV L
Sbjct: 184 EQAFNGIASFEVQASVGMAS---GG-----VAYWAHIGGFIFGVIL 221
>gi|417301571|ref|ZP_12088722.1| Peptidase S54, rhomboid [Rhodopirellula baltica WH47]
gi|327542163|gb|EGF28656.1| Peptidase S54, rhomboid [Rhodopirellula baltica WH47]
Length = 451
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 81/170 (47%), Gaps = 19/170 (11%)
Query: 118 FQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLS 177
++ +++S L + Q+VT+AF HA HL N+FFL+ FG +VE + G + L
Sbjct: 42 LELETLESFALSYETINPIQWVTSAFLHAGPFHLMGNMFFLWAFGLIVEGKVGAWKFLLI 101
Query: 178 YIFTGAAANFVS---WLILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILE-VLILGQ 233
Y+ V L+L S+GAS AVFGL I+++ W +E VLI G
Sbjct: 102 YLGIAVGECVVEQLMMLVLVGEGYSLGASSAVFGLMMIALI----WAPENDVECVLIFGL 157
Query: 234 FVVEKVM--EAAQASAGM-------SGTFIGGYSVQSINHIAHLSGALFG 274
F++ + + E + M F G+SV S + H+ GA G
Sbjct: 158 FLLIRALAFELKVVTLAMLFLFLQVVEMFFAGFSVSS--GLLHMLGAFVG 205
>gi|282890776|ref|ZP_06299296.1| hypothetical protein pah_c026o114 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|338175741|ref|YP_004652551.1| hypothetical protein PUV_17470 [Parachlamydia acanthamoebae UV-7]
gi|281499369|gb|EFB41668.1| hypothetical protein pah_c026o114 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|336480099|emb|CCB86697.1| putative uncharacterized protein [Parachlamydia acanthamoebae UV-7]
Length = 215
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 139 VTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK-NA 197
+T+ F HA W HL+ N+ +L+IFG VE+ G + Y +G AA F + P N
Sbjct: 62 ITSMFMHAGWLHLAGNMLYLWIFGDNVEDYLGKGKYAVFYFLSGLAATFTQYFFQPDSNI 121
Query: 198 VSVGASGAVFGLFAISVLV 216
++GASGA+ G+ +L+
Sbjct: 122 PNLGASGAIAGVLGAYILL 140
>gi|15838777|ref|NP_299465.1| hypothetical protein XF2186 [Xylella fastidiosa 9a5c]
gi|9107328|gb|AAF84985.1|AE004032_4 conserved hypothetical protein [Xylella fastidiosa 9a5c]
Length = 206
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/155 (35%), Positives = 71/155 (45%), Gaps = 34/155 (21%)
Query: 137 QFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNF-GLWLSYIFTGAAANFVSWLILP- 194
+ +T F HAN +HL N+ LY FG ++E G G L+Y A VS ILP
Sbjct: 46 RLITYGFVHANISHLLFNMVTLYFFGSMIEAVMGELTGSLLTYPLFYLGALLVS--ILPS 103
Query: 195 --KNA-----VSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASA 247
KN +S+GASGAV + +VL++ W I+ + I A A
Sbjct: 104 YIKNQKNPKYLSLGASGAVSAVLFAAVLLQ---PWALIVVLFI-------------PAPA 147
Query: 248 GMSGTFIGGYSV-------QSINHIAHLSGALFGV 275
F GYS+ INH AHLSGA FGV
Sbjct: 148 IFYAVFYVGYSIWMERRGDDGINHSAHLSGAAFGV 182
>gi|15839491|ref|NP_334528.1| rhomboid family protein [Mycobacterium tuberculosis CDC1551]
gi|148821302|ref|YP_001286056.1| integral membrane protein [Mycobacterium tuberculosis F11]
gi|253797028|ref|YP_003030029.1| hypothetical protein TBMG_00111 [Mycobacterium tuberculosis KZN
1435]
gi|254233504|ref|ZP_04926830.1| hypothetical protein TBCG_00110 [Mycobacterium tuberculosis C]
gi|289445640|ref|ZP_06435384.1| rhomboid family protein [Mycobacterium tuberculosis CPHL_A]
gi|289747877|ref|ZP_06507255.1| rhomboid family protein [Mycobacterium tuberculosis 02_1987]
gi|308378549|ref|ZP_07482957.2| conserved membrane protein [Mycobacterium tuberculosis SUMu009]
gi|308394636|ref|ZP_07491694.2| conserved membrane protein [Mycobacterium tuberculosis SUMu012]
gi|375294312|ref|YP_005098579.1| hypothetical protein TBSG_00111 [Mycobacterium tuberculosis KZN
4207]
gi|392430521|ref|YP_006471565.1| hypothetical protein TBXG_000111 [Mycobacterium tuberculosis KZN
605]
gi|422815296|ref|ZP_16863514.1| membrane protein [Mycobacterium tuberculosis CDC1551A]
gi|13879598|gb|AAK44342.1| Rhomboid family protein [Mycobacterium tuberculosis CDC1551]
gi|124603297|gb|EAY61572.1| hypothetical protein TBCG_00110 [Mycobacterium tuberculosis C]
gi|148719829|gb|ABR04454.1| conserved integral membrane protein [Mycobacterium tuberculosis
F11]
gi|253318531|gb|ACT23134.1| conserved membrane protein [Mycobacterium tuberculosis KZN 1435]
gi|289418598|gb|EFD15799.1| rhomboid family protein [Mycobacterium tuberculosis CPHL_A]
gi|289688405|gb|EFD55893.1| rhomboid family protein [Mycobacterium tuberculosis 02_1987]
gi|308197784|gb|ADO17908.1| rhomboid protease 1 [Mycobacterium tuberculosis H37Rv]
gi|308197788|gb|ADO17910.1| rhomboid protease 1 [Mycobacterium tuberculosis]
gi|308197792|gb|ADO17912.1| rhomboid protease 1 [Mycobacterium bovis BCG]
gi|308197796|gb|ADO17914.1| rhomboid protease 1 [Mycobacterium bovis]
gi|308352202|gb|EFP41053.1| conserved membrane protein [Mycobacterium tuberculosis SUMu009]
gi|308367674|gb|EFP56525.1| conserved membrane protein [Mycobacterium tuberculosis SUMu012]
gi|323717250|gb|EGB26458.1| membrane protein [Mycobacterium tuberculosis CDC1551A]
gi|328456817|gb|AEB02240.1| conserved membrane protein [Mycobacterium tuberculosis KZN 4207]
gi|392051930|gb|AFM47488.1| conserved membrane protein [Mycobacterium tuberculosis KZN 605]
Length = 284
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 2/98 (2%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
Y+ VT+AF H HL N++ LY+ G +E G Y + + + +LI P
Sbjct: 112 YRLVTSAFLHYGAMHLLLNMWALYVVGPPLEMWLGRLRFGALYAVSALGGSVLVYLIAPL 171
Query: 196 NAVSVGASGAVFGLFAISVLV--KMSWDWRKILEVLIL 231
N + GASGAVFGLF + +V ++ D R ++ ++++
Sbjct: 172 NTATAGASGAVFGLFGATFMVARRLHLDVRWVVALIVI 209
>gi|333398096|ref|ZP_08479909.1| membrane-associated serine protease [Leuconostoc gelidum KCTC 3527]
gi|406599712|ref|YP_006745058.1| membrane-associated serine protease [Leuconostoc gelidum JB7]
gi|406371247|gb|AFS40172.1| membrane-associated serine protease [Leuconostoc gelidum JB7]
Length = 229
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 66/131 (50%), Gaps = 7/131 (5%)
Query: 132 FPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWL 191
+ +++ VT F HA H+ +N+ L+ G + EE G+ Y+F G N +S+L
Sbjct: 57 YDQYWRLVTPIFLHAGVMHILTNMLTLWFIGPIAEETFGSRKFLGLYLFGGIVGNIMSYL 116
Query: 192 ILPKNAVSVGASGAVFGLFAISVL--VKMSWDWRKILEVLILGQFVVEKVMEAAQASA-- 247
P VSVGAS A+FG+F +L ++ D R + ++G FVV +M ++
Sbjct: 117 FAPLT-VSVGASSALFGMFGGLILYAIQFKHDPRIRAQGTMMGLFVVLNLMSGFFSTGID 175
Query: 248 --GMSGTFIGG 256
G G IGG
Sbjct: 176 MWGHIGGLIGG 186
>gi|206977078|ref|ZP_03237978.1| rhomboid family protein [Bacillus cereus H3081.97]
gi|222094009|ref|YP_002528060.1| rhomboid family protein [Bacillus cereus Q1]
gi|206744727|gb|EDZ56134.1| rhomboid family protein [Bacillus cereus H3081.97]
gi|221238058|gb|ACM10768.1| rhomboid family protein [Bacillus cereus Q1]
Length = 190
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T+ H + H N L+I G +E++ G+F + + +G N S+LI+P
Sbjct: 47 WWRLLTSLLVHVDLQHFLFNSICLFILGSSIEKQLGHFSFIIIFFLSGILGNMSSYLIMP 106
Query: 195 KNAVSVGASGAVFGLFA 211
+ GASG +FGL
Sbjct: 107 HEYIHAGASGGIFGLLG 123
>gi|312794672|ref|YP_004027595.1| rhomboid family protein [Caldicellulosiruptor kristjanssonii
177R1B]
gi|312181812|gb|ADQ41982.1| Rhomboid family protein [Caldicellulosiruptor kristjanssonii
177R1B]
Length = 242
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 75/150 (50%), Gaps = 14/150 (9%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
+ +T+ F H +W HL SN++ L++FG VE+ G+F + YI +G AA W
Sbjct: 70 WSIITSMFLHGSWMHLISNMWSLWLFGDNVEDRVGHFRFLIFYILSGIAAALTHWFFNAN 129
Query: 196 NAV-SVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEA---------AQA 245
+ + +VGASGA+ G+ L+ + +I+ ++ LG + + A +Q
Sbjct: 130 SPIPTVGASGAISGVMGAYFLM---FPLSRIVTLIPLGFIPIFIEIPAIFFLGIWFLSQV 186
Query: 246 SAGMSGTFIGGYSVQSINHIAHLSGALFGV 275
S+G+ F G I AH+ G +FGV
Sbjct: 187 SSGILELF-GPVFGSGIAWWAHIGGFVFGV 215
>gi|229101043|ref|ZP_04231824.1| Rhomboid [Bacillus cereus Rock3-28]
gi|228682375|gb|EEL36471.1| Rhomboid [Bacillus cereus Rock3-28]
Length = 187
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T+ H + H SN L+I G +E++ G+ + + G + N S++I+P
Sbjct: 47 WWRVITSLLVHVDLQHFLSNSICLFILGSSIEKQLGHISFIILFFLPGISGNIASYIIMP 106
Query: 195 KNAVSVGASGAVFGLFA 211
+ GASG +FGL
Sbjct: 107 PEYIHTGASGGIFGLLG 123
>gi|218441081|ref|YP_002379410.1| rhomboid family protein [Cyanothece sp. PCC 7424]
gi|218173809|gb|ACK72542.1| Rhomboid family protein [Cyanothece sp. PCC 7424]
Length = 236
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 75/164 (45%), Gaps = 28/164 (17%)
Query: 133 PAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLI 192
P W T+ F HA + H+ N+ FL+IFG VE++ G+ + Y+ G A+ W
Sbjct: 67 PEWLTLFTSQFLHAGFLHIIGNMLFLWIFGNNVEDKLGHVKYLIFYLSCGVLASLTQWYF 126
Query: 193 LPKNAV-SVGASGAVFGLFA----------ISVLVKMS---WDWRKILEVLILGQFVVEK 238
P +++ S+GASGA+ G+ + L+ + W R I + LG + +++
Sbjct: 127 SPFSSIPSLGASGAIAGVMGAYILKFPQAEVITLIPLGFFFWTVR-IPAIFFLGFWFIQQ 185
Query: 239 VMEA-----AQASAGMSGTFIGGYSVQSINHIAHLSGALFGVFL 277
AS GM GG I + AH G +FGV L
Sbjct: 186 AFNGFSSLRVPASVGMEN---GG-----IAYWAHAGGFIFGVIL 221
>gi|119485121|ref|ZP_01619506.1| Rhomboid-like protein [Lyngbya sp. PCC 8106]
gi|119457349|gb|EAW38474.1| Rhomboid-like protein [Lyngbya sp. PCC 8106]
Length = 233
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 73/159 (45%), Gaps = 17/159 (10%)
Query: 132 FPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWL 191
FP W +T+ F H + H+ N+ +L IFG VE+ G+F + YI G A
Sbjct: 66 FPEWITLITSQFLHGGFGHIIGNMLYLAIFGNNVEDCLGHFKFLIFYIVCGILAALTQGF 125
Query: 192 ILPKNAV-SVGASGAVFGLFAISVLVKMSWDWRKILEVLI------------LGQFVVEK 238
P +A+ ++GASGA+ G+ + +++ +L L+ LG + V +
Sbjct: 126 FAPASAIPTLGASGAIAGVLG-AYIIRFPRAKITLLPFLLIPIPIRLSAIFFLGFWFVTQ 184
Query: 239 VMEAAQASAGMSGTFIGGYSVQSINHIAHLSGALFGVFL 277
+M A ++ + G + + AH G +FGV L
Sbjct: 185 LMNGV---ASLNVDAVMGSEPGGVAYWAHAGGFVFGVIL 220
>gi|389792719|ref|ZP_10195903.1| hypothetical protein UU9_01024 [Rhodanobacter fulvus Jip2]
gi|388435906|gb|EIL92795.1| hypothetical protein UU9_01024 [Rhodanobacter fulvus Jip2]
Length = 201
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 77/154 (50%), Gaps = 29/154 (18%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVE----EEEGNFGLWLSYIFTGAAANFVSW 190
+Y+ VT HA++ HL N+F L+ FG+++E + G+FG L YI + +
Sbjct: 41 YYRLVTYGLVHADFGHLLFNMFTLFFFGRVMEGFFAQRLGSFGFVLFYI------GGLVF 94
Query: 191 LILPK--------NAVSVGASGAVFG-LFAISVLVKMSWDWRKILEVLILGQFVVEKVME 241
ILP N S+GASGAV LFA +L W++IL +++ +V V+
Sbjct: 95 SILPTYLKHRNDPNYRSLGASGAVSAVLFAFILLAP----WQRILVLVVPMPAIVYAVLY 150
Query: 242 AAQASAGMSGTFIGGYSVQSINHIAHLSGALFGV 275
A + ++ ++NH AHL GA +GV
Sbjct: 151 TAYS------IYMDRRGQGNVNHSAHLWGAAYGV 178
>gi|404370657|ref|ZP_10975977.1| hypothetical protein CSBG_02042 [Clostridium sp. 7_2_43FAA]
gi|226913215|gb|EEH98416.1| hypothetical protein CSBG_02042 [Clostridium sp. 7_2_43FAA]
Length = 325
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 71/144 (49%), Gaps = 14/144 (9%)
Query: 131 NFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSW 190
N Y+ +T+AF H H+ N+ L I G+ VE G+ Y+ + + VS+
Sbjct: 180 NSGEIYRLLTSAFLHGGIIHIFFNMSALNIIGREVEAVYGSKRYIAIYVISALGGSVVSY 239
Query: 191 LILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMS 250
L P N++SVGASGA+FGL ++ + + +G+ ++ ++E +
Sbjct: 240 LFKP-NSISVGASGAIFGLLGAMLIFGLKERDK-------IGKQYMKNILETIGLNV--- 288
Query: 251 GTFIGGYSVQSINHIAHLSGALFG 274
I G ++ +I++ AHL G + G
Sbjct: 289 ---IIGITIPNIDNFAHLGGLILG 309
>gi|217957809|ref|YP_002336353.1| rhomboid family protein [Bacillus cereus AH187]
gi|375282339|ref|YP_005102774.1| rhomboid family protein [Bacillus cereus NC7401]
gi|423357185|ref|ZP_17334784.1| hypothetical protein IAU_05233 [Bacillus cereus IS075]
gi|423376166|ref|ZP_17353480.1| hypothetical protein IC5_05196 [Bacillus cereus AND1407]
gi|423572350|ref|ZP_17548557.1| hypothetical protein II7_05550 [Bacillus cereus MSX-A12]
gi|217066635|gb|ACJ80885.1| rhomboid family protein [Bacillus cereus AH187]
gi|358350862|dbj|BAL16034.1| rhomboid family protein [Bacillus cereus NC7401]
gi|401075813|gb|EJP84182.1| hypothetical protein IAU_05233 [Bacillus cereus IS075]
gi|401089157|gb|EJP97329.1| hypothetical protein IC5_05196 [Bacillus cereus AND1407]
gi|401197717|gb|EJR04645.1| hypothetical protein II7_05550 [Bacillus cereus MSX-A12]
Length = 190
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T+ H + H N L+I G +E++ G+F + + +G N S+LI+P
Sbjct: 47 WWRLLTSLLVHVDLQHFLFNSICLFILGSSIEKQLGHFSFIIIFFLSGILGNMSSYLIMP 106
Query: 195 KNAVSVGASGAVFGLFA 211
+ GASG +FGL
Sbjct: 107 HEYIHAGASGGIFGLLG 123
>gi|260432921|ref|ZP_05786892.1| rhomboid family protein [Silicibacter lacuscaerulensis ITI-1157]
gi|260416749|gb|EEX10008.1| rhomboid family protein [Silicibacter lacuscaerulensis ITI-1157]
Length = 247
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 137 QFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKN 196
VT+ F H W HL N+ FL+IFG +E+E G+ L Y+ G A V + P +
Sbjct: 63 TLVTSMFLHGGWMHLIGNMLFLWIFGDNLEDEMGHLPFLLFYMVAGIGAGLVHIITAPGS 122
Query: 197 AV-SVGASGAV 206
V ++GASGA+
Sbjct: 123 LVPTIGASGAI 133
>gi|256751175|ref|ZP_05492056.1| Rhomboid family protein [Thermoanaerobacter ethanolicus CCSD1]
gi|392939001|ref|ZP_10304645.1| putative membrane protein [Thermoanaerobacter siderophilus SR4]
gi|256749900|gb|EEU62923.1| Rhomboid family protein [Thermoanaerobacter ethanolicus CCSD1]
gi|392290751|gb|EIV99194.1| putative membrane protein [Thermoanaerobacter siderophilus SR4]
Length = 227
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 72/150 (48%), Gaps = 8/150 (5%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
Y F+T+ F H N HL SN++ L++FG VE+ G+ + YI +G A + P
Sbjct: 69 YPFITSMFLHGNTFHLISNMWILWLFGDNVEDRMGHIRFLIFYILSGVIAGVFHLVFNPI 128
Query: 196 NAVS-VGASGAVFG-------LFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASA 247
+ V VGASGA+ G LF + ++ + + + L + V + Q +
Sbjct: 129 SPVPVVGASGAIAGVMGAYFILFPSARIITLVPTFFLVPVFLPIHAVVYLFLWFLTQLYS 188
Query: 248 GMSGTFIGGYSVQSINHIAHLSGALFGVFL 277
G + IGG +V I AH+ G + GV L
Sbjct: 189 GTVYSVIGGTTVGGIAWWAHIGGFISGVLL 218
>gi|300361225|ref|ZP_07057402.1| S54 family peptidase [Lactobacillus gasseri JV-V03]
gi|300353844|gb|EFJ69715.1| S54 family peptidase [Lactobacillus gasseri JV-V03]
Length = 228
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 47/85 (55%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ TA F H W H++SN +Y G+ +E G++ Y+ +G N +S+
Sbjct: 58 WWRLFTAQFLHIGWLHIASNAVMIYYIGQFMEPLLGHWRFLSVYLLSGIGGNLLSYAYGS 117
Query: 195 KNAVSVGASGAVFGLFAISVLVKMS 219
+ VS GAS A+FGLF + + + ++
Sbjct: 118 DSVVSAGASTALFGLFGVVIALYLA 142
>gi|21222264|ref|NP_628043.1| hypothetical protein SCO3855 [Streptomyces coelicolor A3(2)]
gi|289770532|ref|ZP_06529910.1| conserved hypothetical protein [Streptomyces lividans TK24]
gi|5102807|emb|CAB45222.1| putative membrane protein [Streptomyces coelicolor A3(2)]
gi|289700731|gb|EFD68160.1| conserved hypothetical protein [Streptomyces lividans TK24]
Length = 297
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ VT F H H+ N+ L+ G +E G Y+ +G A + +++L+
Sbjct: 134 WYRLVTTMFTHEEIWHIGFNMISLWFLGGPLEAALGRARYLALYLVSGLAGSVLAYLLAS 193
Query: 195 KNAVSVGASGAVFGLF-AISVLV-KMSWDWRKILEVLIL 231
++GASGA+FGLF A + LV +++ D R ++ +L++
Sbjct: 194 PTTATLGASGAIFGLFGATAALVRRLNADMRPVVILLVI 232
>gi|395768820|ref|ZP_10449335.1| hypothetical protein Saci8_03541 [Streptomyces acidiscabies 84-104]
Length = 298
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 58/99 (58%), Gaps = 2/99 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ +T+ F H + H+ SN L+ G +E G + +G A + +++L+
Sbjct: 135 WYRLLTSMFLHGSIIHILSNALSLWWIGGPLEAALGRARYLALFFVSGLAGSALTYLVAE 194
Query: 195 KNAVSVGASGAVFGLF-AISVLV-KMSWDWRKILEVLIL 231
N S+GASGA+FG+F A++VL+ + +D R ++ +L++
Sbjct: 195 PNQASLGASGAIFGVFGAMAVLMRRQRYDMRPMIAILVI 233
>gi|451821413|ref|YP_007457614.1| rhomboid protease GluP [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
gi|451787392|gb|AGF58360.1| rhomboid protease GluP [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
Length = 332
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 137 QFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKN 196
+ +T AF H+ H++ N++ LYI G +E+ G + YI + A+ +S+ + P +
Sbjct: 191 RLLTCAFLHSGLIHIACNMYSLYIIGPQIEQIYGTLKYLIIYIVSSITASALSYFMSP-D 249
Query: 197 AVSVGASGAVFGLFA 211
++SVGASGA+FGL
Sbjct: 250 SISVGASGAIFGLMG 264
>gi|421611897|ref|ZP_16053025.1| Peptidase S54, rhomboid [Rhodopirellula baltica SH28]
gi|408497302|gb|EKK01833.1| Peptidase S54, rhomboid [Rhodopirellula baltica SH28]
Length = 451
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 81/170 (47%), Gaps = 19/170 (11%)
Query: 118 FQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLS 177
++ +++S L + Q++T+AF HA HL N+FFL+ FG +VE + G + L
Sbjct: 42 IELETLESFALSYETINPIQWITSAFLHAGPFHLMGNMFFLWAFGLIVEGKVGAWKFLLI 101
Query: 178 YIFTGAAANFVS---WLILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILE-VLILGQ 233
Y+ V L+L S+GAS AVFGL I+++ W +E VLI G
Sbjct: 102 YLGIAVGECVVEQLMMLVLVGEGYSLGASSAVFGLMTIALI----WAPENDVECVLIFGL 157
Query: 234 FVVEKVM--EAAQASAGM-------SGTFIGGYSVQSINHIAHLSGALFG 274
F++ + + E + M F G+SV S + H+ GA G
Sbjct: 158 FLLIRALAFELKVVTLAMLFLFLQVVEMFFAGFSVSS--GLLHMLGAFVG 205
>gi|282851375|ref|ZP_06260740.1| peptidase, S54 (rhomboid) family protein [Lactobacillus gasseri
224-1]
gi|282557343|gb|EFB62940.1| peptidase, S54 (rhomboid) family protein [Lactobacillus gasseri
224-1]
Length = 241
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ TA F H W H++SN +Y G+ +E G++ Y+ +G N +S+
Sbjct: 58 WWRLFTAQFLHIGWLHIASNAVMIYYVGQFMEPLLGHWRFLSVYLLSGIGGNLLSYAYGS 117
Query: 195 KNAVSVGASGAVFGLFAISV 214
+ VS GAS A+FGLF + +
Sbjct: 118 DSVVSAGASTALFGLFGVVI 137
>gi|307710192|ref|ZP_07646636.1| rhomboid family protein [Streptococcus mitis SK564]
gi|307619172|gb|EFN98304.1| rhomboid family protein [Streptococcus mitis SK564]
Length = 224
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 84/184 (45%), Gaps = 22/184 (11%)
Query: 90 ERRKPKKS-----VNGVFWIILLNLG--LYVADHVFQVRSIKSLYLYHNFPA--WYQFVT 140
+RR P S VF ++L+ G Y AD +FQ ++ + FP W F +
Sbjct: 6 DRRYPVTSFFLLVTALVFLLMLVTTGGNFYRADTLFQFGAMYGPAI-RLFPEQIWRLF-S 63
Query: 141 AAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSV 200
A F H W H N+ LY G+ VEE G+ + Y+ +G N ++ PK+ ++
Sbjct: 64 AIFIHIGWEHFIVNMLSLYYLGRQVEEIFGSKQFFFLYLLSGMMGNLFVFVFSPKS-LAA 122
Query: 201 GASGAVFGLFAISVLVK----------MSWDWRKILEVLILGQFVVEKVMEAAQASAGMS 250
GAS +++GLFA ++++ + + + V I+G ++ + A +
Sbjct: 123 GASTSLYGLFAAIIILRYATRNPYIQQLGQSYLTLFVVNIIGSVLIPGISLAGHIGGAVG 182
Query: 251 GTFI 254
G F+
Sbjct: 183 GAFL 186
>gi|427724622|ref|YP_007071899.1| rhomboid family protein [Leptolyngbya sp. PCC 7376]
gi|427356342|gb|AFY39065.1| Rhomboid family protein [Leptolyngbya sp. PCC 7376]
Length = 556
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/235 (24%), Positives = 100/235 (42%), Gaps = 47/235 (20%)
Query: 80 ISQLELDKPEER---RKP--KKSVNGVFWIILLNLGLYVADHV--FQVRSIKSLYLYHNF 132
I+Q +D+ + R+P K+ + +++ +N+ ++++ V F+V L L
Sbjct: 314 INQANIDRSYQELLERRPIYKQGFSINLFLVFVNIAVFISGIVLNFKVNRGALLDLAGFV 373
Query: 133 PA------WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAA- 185
P+ W++ +TA F H +W HL +N+ LY+ G VE G YI +G A
Sbjct: 374 PSEVINGEWWRIITATFIHIDWGHLLTNILTLYLLGGFVERNLGKTRYLFIYIASGVGAM 433
Query: 186 ----------------NFVSWLILPKNAVS------VGASGAVFGLF-AISVLVKMSWDW 222
F WL+ + + VGASG++ G+ AI+V++ W
Sbjct: 434 LMLLGLVFFAQGLDFSGFPRWLLFLTDEIRSTYRLWVGASGSIMGMIGAIAVILFQGWQQ 493
Query: 223 RKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQSINHIAHLSGALFGVFL 277
K L QF + + Q + +S T + YS H G + G+ L
Sbjct: 494 EKSKSA--LRQFRLISGIIILQFAIDLSSTNVSFYS--------HFLGLVLGILL 538
>gi|302872967|ref|YP_003841600.1| rhomboid family protein [Clostridium cellulovorans 743B]
gi|307686518|ref|ZP_07628964.1| Rhomboid family protein [Clostridium cellulovorans 743B]
gi|302575824|gb|ADL49836.1| Rhomboid family protein [Clostridium cellulovorans 743B]
Length = 326
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 61/123 (49%), Gaps = 7/123 (5%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+Y+ +T F H+ H++ N++ L G+L+E G L YIF G + + S+L P
Sbjct: 185 FYRLLTCTFLHSGLMHIAFNMYALNNIGRLIERVYGWKKFILIYIFAGLSGSLASFLFSP 244
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFI 254
VSVGASGA+FGLF +++ M +K + LG V+ G S T I
Sbjct: 245 --YVSVGASGAIFGLFGAALI--MGLKLKKYINSNFLGSLASVIVVNVI---FGFSSTGI 297
Query: 255 GGY 257
Y
Sbjct: 298 DNY 300
>gi|386719186|ref|YP_006185512.1| hypothetical protein SMD_2811 [Stenotrophomonas maltophilia D457]
gi|384078748|emb|CCH13341.1| hypothetical protein SMD_2811 [Stenotrophomonas maltophilia D457]
Length = 208
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 69/155 (44%), Gaps = 34/155 (21%)
Query: 137 QFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNF-GLWLSYIFTGAAANFVSWLILPK 195
+ VT F HA+W+HL N+ L+ FG +E G +L+Y A VS ILP
Sbjct: 44 RLVTYGFIHADWSHLIFNMITLFFFGGFIESVMVQLTGSYLTYPAFYIGALLVS--ILPS 101
Query: 196 --------NAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASA 247
N +S+GASGAV + +L+K W IL I A A
Sbjct: 102 YLKNQKNPNYLSLGASGAVSAVLFAFILIK---PWSIILVFFI-------------PAPA 145
Query: 248 GMSGTFIGGYSV-------QSINHIAHLSGALFGV 275
+ F GYS+ INH AHL+GA FGV
Sbjct: 146 IIYAAFYVGYSIWMDRRGGDRINHSAHLAGAAFGV 180
>gi|441213690|ref|ZP_20975936.1| peptidase, S54 family [Mycobacterium smegmatis MKD8]
gi|440625654|gb|ELQ87500.1| peptidase, S54 family [Mycobacterium smegmatis MKD8]
Length = 250
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 73/137 (53%), Gaps = 8/137 (5%)
Query: 97 SVNGVFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLF 156
+VN + +++ L G + Q SI + + +Y+ VT+ F H HL N++
Sbjct: 45 AVNVLMFVLELAAGALKRELALQPASIAA------YDEYYRLVTSMFLHYGAMHLLFNMW 98
Query: 157 FLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLF-AISVL 215
LY+ G +E+ G + Y +G + + +++ P N+ + GASGA+FGLF AI V+
Sbjct: 99 ALYVVGPPLEQWLGRLRFGVLYALSGLGGSVLVYMLSPLNSATAGASGAIFGLFGAIFVV 158
Query: 216 VK-MSWDWRKILEVLIL 231
+ ++ D R I ++++
Sbjct: 159 ARHLNLDVRAIGVIVVI 175
>gi|433633128|ref|YP_007266755.1| Conserved membrane protein of unknown function [Mycobacterium
canettii CIPT 140070017]
gi|432164721|emb|CCK62183.1| Conserved membrane protein of unknown function [Mycobacterium
canettii CIPT 140070017]
Length = 249
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 2/98 (2%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
Y+ VT+AF H HL N++ LY+ G +E G Y + + + +LI P
Sbjct: 77 YRLVTSAFLHYGAMHLLLNMWALYVVGPPLEMWLGRLRFGALYAVSALGGSVLVYLIAPL 136
Query: 196 NAVSVGASGAVFGLFAISVLV--KMSWDWRKILEVLIL 231
N + GASGAVFGLF + +V ++ D R ++ ++++
Sbjct: 137 NTATAGASGAVFGLFGATFMVARRLHLDVRWVVALIVI 174
>gi|433640241|ref|YP_007286000.1| Conserved membrane protein of unknown function [Mycobacterium
canettii CIPT 140070008]
gi|432156789|emb|CCK54054.1| Conserved membrane protein of unknown function [Mycobacterium
canettii CIPT 140070008]
Length = 249
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 2/98 (2%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
Y+ VT+AF H HL N++ LY+ G +E G Y + + + +LI P
Sbjct: 77 YRLVTSAFLHYGAMHLLLNMWALYVVGPPLEMWLGRLRFGALYAVSALGGSVLVYLIAPL 136
Query: 196 NAVSVGASGAVFGLFAISVLV--KMSWDWRKILEVLIL 231
N + GASGAVFGLF + +V ++ D R ++ ++++
Sbjct: 137 NTATAGASGAVFGLFGATFMVARRLHLDVRWVVALIVI 174
>gi|15607252|ref|NP_214624.1| Probable conserved integral membrane protein [Mycobacterium
tuberculosis H37Rv]
gi|31791288|ref|NP_853781.1| hypothetical protein Mb0114 [Mycobacterium bovis AF2122/97]
gi|121636023|ref|YP_976246.1| integral membrane protein [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|148659873|ref|YP_001281396.1| rhomboid family protein [Mycobacterium tuberculosis H37Ra]
gi|167967299|ref|ZP_02549576.1| conserved integral membrane protein [Mycobacterium tuberculosis
H37Ra]
gi|224988496|ref|YP_002643183.1| integral membrane protein [Mycobacterium bovis BCG str. Tokyo 172]
gi|254366565|ref|ZP_04982609.1| conserved integral membrane protein [Mycobacterium tuberculosis
str. Haarlem]
gi|289441479|ref|ZP_06431223.1| conserved membrane protein [Mycobacterium tuberculosis T46]
gi|289568003|ref|ZP_06448230.1| conserved membrane protein [Mycobacterium tuberculosis T17]
gi|289572690|ref|ZP_06452917.1| rhomboid family protein [Mycobacterium tuberculosis K85]
gi|289748582|ref|ZP_06507960.1| conserved membrane protein [Mycobacterium tuberculosis T92]
gi|289756172|ref|ZP_06515550.1| rhomboid family protein [Mycobacterium tuberculosis EAS054]
gi|289760210|ref|ZP_06519588.1| rhomboid family protein [Mycobacterium tuberculosis T85]
gi|289764227|ref|ZP_06523605.1| rhomboid family protein [Mycobacterium tuberculosis GM 1503]
gi|294992953|ref|ZP_06798644.1| putative integral membrane protein [Mycobacterium tuberculosis 210]
gi|297632583|ref|ZP_06950363.1| putative integral membrane protein [Mycobacterium tuberculosis KZN
4207]
gi|297729557|ref|ZP_06958675.1| putative integral membrane protein [Mycobacterium tuberculosis KZN
R506]
gi|298527502|ref|ZP_07014911.1| rhomboid family serine protease [Mycobacterium tuberculosis
94_M4241A]
gi|306774194|ref|ZP_07412531.1| conserved membrane protein [Mycobacterium tuberculosis SUMu001]
gi|306778939|ref|ZP_07417276.1| conserved membrane protein [Mycobacterium tuberculosis SUMu002]
gi|306782726|ref|ZP_07421048.1| conserved membrane protein [Mycobacterium tuberculosis SUMu003]
gi|306787094|ref|ZP_07425416.1| conserved membrane protein [Mycobacterium tuberculosis SUMu004]
gi|306791651|ref|ZP_07429953.1| conserved membrane protein [Mycobacterium tuberculosis SUMu005]
gi|306798472|ref|ZP_07436774.1| conserved membrane protein [Mycobacterium tuberculosis SUMu006]
gi|306801688|ref|ZP_07438356.1| conserved membrane protein [Mycobacterium tuberculosis SUMu008]
gi|306805900|ref|ZP_07442568.1| conserved membrane protein [Mycobacterium tuberculosis SUMu007]
gi|306974529|ref|ZP_07487190.1| conserved membrane protein [Mycobacterium tuberculosis SUMu010]
gi|307082237|ref|ZP_07491407.1| conserved membrane protein [Mycobacterium tuberculosis SUMu011]
gi|313656884|ref|ZP_07813764.1| putative integral membrane protein [Mycobacterium tuberculosis KZN
V2475]
gi|339630194|ref|YP_004721836.1| hypothetical protein MAF_01110 [Mycobacterium africanum GM041182]
gi|340625145|ref|YP_004743597.1| putative integral membrane protein [Mycobacterium canettii CIPT
140010059]
gi|378769856|ref|YP_005169589.1| hypothetical protein BCGMEX_0114 [Mycobacterium bovis BCG str.
Mexico]
gi|385996882|ref|YP_005915180.1| integral membrane protein [Mycobacterium tuberculosis CTRI-2]
gi|386003192|ref|YP_005921471.1| hypothetical protein MRGA423_00715 [Mycobacterium tuberculosis
RGTB423]
gi|392384830|ref|YP_005306459.1| unnamed protein product [Mycobacterium tuberculosis UT205]
gi|397671894|ref|YP_006513428.1| hypothetical protein RVBD_0110 [Mycobacterium tuberculosis H37Rv]
gi|424806593|ref|ZP_18232024.1| conserved membrane protein [Mycobacterium tuberculosis W-148]
gi|433625211|ref|YP_007258840.1| Conserved membrane protein of unknown function [Mycobacterium
canettii CIPT 140060008]
gi|31616873|emb|CAD92975.1| PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN [Mycobacterium bovis
AF2122/97]
gi|121491670|emb|CAL70128.1| Probable conserved integral membrane protein [Mycobacterium bovis
BCG str. Pasteur 1173P2]
gi|134152077|gb|EBA44122.1| conserved integral membrane protein [Mycobacterium tuberculosis
str. Haarlem]
gi|148504025|gb|ABQ71834.1| Rhomboid family protein [Mycobacterium tuberculosis H37Ra]
gi|224771609|dbj|BAH24415.1| putative integral membrane protein [Mycobacterium bovis BCG str.
Tokyo 172]
gi|289414398|gb|EFD11638.1| conserved membrane protein [Mycobacterium tuberculosis T46]
gi|289537121|gb|EFD41699.1| rhomboid family protein [Mycobacterium tuberculosis K85]
gi|289541756|gb|EFD45405.1| conserved membrane protein [Mycobacterium tuberculosis T17]
gi|289689169|gb|EFD56598.1| conserved membrane protein [Mycobacterium tuberculosis T92]
gi|289696759|gb|EFD64188.1| rhomboid family protein [Mycobacterium tuberculosis EAS054]
gi|289711733|gb|EFD75749.1| rhomboid family protein [Mycobacterium tuberculosis GM 1503]
gi|289715774|gb|EFD79786.1| rhomboid family protein [Mycobacterium tuberculosis T85]
gi|298497296|gb|EFI32590.1| rhomboid family serine protease [Mycobacterium tuberculosis
94_M4241A]
gi|308217202|gb|EFO76601.1| conserved membrane protein [Mycobacterium tuberculosis SUMu001]
gi|308328061|gb|EFP16912.1| conserved membrane protein [Mycobacterium tuberculosis SUMu002]
gi|308332433|gb|EFP21284.1| conserved membrane protein [Mycobacterium tuberculosis SUMu003]
gi|308336197|gb|EFP25048.1| conserved membrane protein [Mycobacterium tuberculosis SUMu004]
gi|308339800|gb|EFP28651.1| conserved membrane protein [Mycobacterium tuberculosis SUMu005]
gi|308341295|gb|EFP30146.1| conserved membrane protein [Mycobacterium tuberculosis SUMu006]
gi|308347577|gb|EFP36428.1| conserved membrane protein [Mycobacterium tuberculosis SUMu007]
gi|308351519|gb|EFP40370.1| conserved membrane protein [Mycobacterium tuberculosis SUMu008]
gi|308356167|gb|EFP45018.1| conserved membrane protein [Mycobacterium tuberculosis SUMu010]
gi|308360107|gb|EFP48958.1| conserved membrane protein [Mycobacterium tuberculosis SUMu011]
gi|326905869|gb|EGE52802.1| conserved membrane protein [Mycobacterium tuberculosis W-148]
gi|339329550|emb|CCC25185.1| putative conserved integral membrane protein [Mycobacterium
africanum GM041182]
gi|340003335|emb|CCC42454.1| putative conserved integral membrane protein [Mycobacterium
canettii CIPT 140010059]
gi|341600039|emb|CCC62707.1| probable conserved integral membrane protein [Mycobacterium bovis
BCG str. Moreau RDJ]
gi|344217928|gb|AEM98558.1| integral membrane protein [Mycobacterium tuberculosis CTRI-2]
gi|356592177|gb|AET17406.1| Conserved integral membrane protein [Mycobacterium bovis BCG str.
Mexico]
gi|378543381|emb|CCE35652.1| unnamed protein product [Mycobacterium tuberculosis UT205]
gi|380723680|gb|AFE11475.1| putative integral membrane protein [Mycobacterium tuberculosis
RGTB423]
gi|395136798|gb|AFN47957.1| hypothetical protein RVBD_0110 [Mycobacterium tuberculosis H37Rv]
gi|432152817|emb|CCK50026.1| Conserved membrane protein of unknown function [Mycobacterium
canettii CIPT 140060008]
gi|440579558|emb|CCG09961.1| putative CONSERVED INTEGRAL membrane protein [Mycobacterium
tuberculosis 7199-99]
gi|444893582|emb|CCP42835.1| Probable conserved integral membrane protein [Mycobacterium
tuberculosis H37Rv]
Length = 249
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 2/98 (2%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
Y+ VT+AF H HL N++ LY+ G +E G Y + + + +LI P
Sbjct: 77 YRLVTSAFLHYGAMHLLLNMWALYVVGPPLEMWLGRLRFGALYAVSALGGSVLVYLIAPL 136
Query: 196 NAVSVGASGAVFGLFAISVLV--KMSWDWRKILEVLIL 231
N + GASGAVFGLF + +V ++ D R ++ ++++
Sbjct: 137 NTATAGASGAVFGLFGATFMVARRLHLDVRWVVALIVI 174
>gi|433629203|ref|YP_007262831.1| Conserved membrane protein of unknown function [Mycobacterium
canettii CIPT 140070010]
gi|432160796|emb|CCK58126.1| Conserved membrane protein of unknown function [Mycobacterium
canettii CIPT 140070010]
Length = 249
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 2/98 (2%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
Y+ VT+AF H HL N++ LY+ G +E G Y + + + +LI P
Sbjct: 77 YRLVTSAFLHYGAMHLLLNMWALYVVGPPLEMWLGRLRFGALYAVSALGGSVLVYLIAPL 136
Query: 196 NAVSVGASGAVFGLFAISVLV--KMSWDWRKILEVLIL 231
N + GASGAVFGLF + +V ++ D R ++ ++++
Sbjct: 137 NTATAGASGAVFGLFGATFMVARRLHLDVRWVVALIVI 174
>gi|238853801|ref|ZP_04644167.1| membrane-associated serine protease [Lactobacillus gasseri 202-4]
gi|238833610|gb|EEQ25881.1| membrane-associated serine protease [Lactobacillus gasseri 202-4]
Length = 228
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 47/85 (55%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ TA F H W H++SN +Y G+ +E G++ Y+ +G N +S+
Sbjct: 58 WWRLFTAQFLHIGWLHIASNAVMIYYVGQFMEPLLGHWRFLSVYLLSGIGGNLLSYAYGS 117
Query: 195 KNAVSVGASGAVFGLFAISVLVKMS 219
+ VS GAS A+FGLF + + + ++
Sbjct: 118 DSVVSAGASTALFGLFGVVIALYLA 142
>gi|288916640|ref|ZP_06411015.1| Rhomboid family protein [Frankia sp. EUN1f]
gi|288351895|gb|EFC86097.1| Rhomboid family protein [Frankia sp. EUN1f]
Length = 208
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 55/102 (53%), Gaps = 2/102 (1%)
Query: 132 FPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWL 191
+ +Y+FV AAF H N+ H+ NL+ L+I G +E G L ++ N +S++
Sbjct: 40 YDQYYRFVAAAFLHGNFLHILVNLYALFIMGHQLEAVVGRLRLIGLFLAGAVGGNVLSYV 99
Query: 192 ILPKNAVSVGASGAVFGLFAISVLV--KMSWDWRKILEVLIL 231
+ S+GAS A+FG F ++ +M D +IL +++L
Sbjct: 100 VNGLETSSLGASTAIFGFFGAFYVIARRMRADTTQILILIVL 141
>gi|344208088|ref|YP_004793229.1| rhomboid family protein [Stenotrophomonas maltophilia JV3]
gi|343779450|gb|AEM52003.1| Rhomboid family protein [Stenotrophomonas maltophilia JV3]
Length = 208
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 69/155 (44%), Gaps = 34/155 (21%)
Query: 137 QFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNF-GLWLSYIFTGAAANFVSWLILPK 195
+ VT F HA+W+HL N+ L+ FG +E G +L+Y A VS ILP
Sbjct: 44 RLVTYGFIHADWSHLIFNMITLFFFGGFIESVMVQLTGSYLTYPAFYIGALLVS--ILPS 101
Query: 196 --------NAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASA 247
N +S+GASGAV + +L+K W IL I A A
Sbjct: 102 YLKNQKNPNYLSLGASGAVSAVLFAFILIK---PWSIILVFFI-------------PAPA 145
Query: 248 GMSGTFIGGYSV-------QSINHIAHLSGALFGV 275
+ F GYS+ INH AHL+GA FGV
Sbjct: 146 IIYAAFYVGYSIWMDKRGGDRINHSAHLAGAAFGV 180
>gi|116630012|ref|YP_815184.1| membrane-associated serine protease [Lactobacillus gasseri ATCC
33323]
gi|311110357|ref|ZP_07711754.1| putative small hydrophobic molecule transporter protein
[Lactobacillus gasseri MV-22]
gi|116095594|gb|ABJ60746.1| Membrane-associated serine protease [Lactobacillus gasseri ATCC
33323]
gi|311065511|gb|EFQ45851.1| putative small hydrophobic molecule transporter protein
[Lactobacillus gasseri MV-22]
Length = 228
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 47/85 (55%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ TA F H W H++SN +Y G+ +E G++ Y+ +G N +S+
Sbjct: 58 WWRLFTAQFLHIGWLHIASNAVMIYYVGQFMEPLLGHWRFLSVYLLSGIGGNLLSYAYGS 117
Query: 195 KNAVSVGASGAVFGLFAISVLVKMS 219
+ VS GAS A+FGLF + + + ++
Sbjct: 118 DSVVSAGASTALFGLFGVVIALYLA 142
>gi|254549044|ref|ZP_05139491.1| putative integral membrane protein [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
Length = 247
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 2/98 (2%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
Y+ VT+AF H HL N++ LY+ G +E G Y + + + +LI P
Sbjct: 75 YRLVTSAFLHYGAMHLLLNMWALYVVGPPLEMWLGRLRFGALYAVSALGGSVLVYLIAPL 134
Query: 196 NAVSVGASGAVFGLFAISVLV--KMSWDWRKILEVLIL 231
N + GASGAVFGLF + +V ++ D R ++ ++++
Sbjct: 135 NTATAGASGAVFGLFGATFMVARRLHLDVRWVVALIVI 172
>gi|83854670|ref|ZP_00948200.1| rhomboid family protein [Sulfitobacter sp. NAS-14.1]
gi|83842513|gb|EAP81680.1| rhomboid family protein [Sulfitobacter sp. NAS-14.1]
Length = 247
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 139 VTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAV 198
+T+ F H W HL+ N+ FLYIFG +E+E G+ G L Y+ G + + P + V
Sbjct: 65 LTSMFLHGGWMHLAGNMLFLYIFGDNIEDEMGHGGYLLFYLACGLLSALAHVISAPYSPV 124
Query: 199 -SVGASGAVFGLFAISVLV 216
+VGASGA+ G+ +L+
Sbjct: 125 PTVGASGAIAGVMGGYLLL 143
>gi|397905238|ref|ZP_10506105.1| rhomboid family protein [Caloramator australicus RC3]
gi|397161719|emb|CCJ33439.1| rhomboid family protein [Caloramator australicus RC3]
Length = 238
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 73/149 (48%), Gaps = 16/149 (10%)
Query: 140 TAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLI-LPKNAV 198
T+ F H +W HL SN++ L++FG VE+ G+F + Y+ +G A V +L V
Sbjct: 74 TSMFLHGSWTHLISNMWALWLFGDNVEDRMGHFKFLVFYLISGFIAALVHYLFNFNSPVV 133
Query: 199 SVGASGAVFGLFA----------ISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAG 248
++GASGA+ G+ I+ L+ + W I + + F+ + +Q S G
Sbjct: 134 TIGASGAIAGVMGAYFIMFPFARITTLIPLLW----IPFFVDIPSFIYIGLWFISQISNG 189
Query: 249 MSGTFIGGYSVQSINHIAHLSGALFGVFL 277
+ T IG I AH+ G L+G ++
Sbjct: 190 VL-TLIGPLYGAGIAWWAHIGGFLYGAYV 217
>gi|418520077|ref|ZP_13086128.1| hypothetical protein WS7_03445 [Xanthomonas axonopodis pv.
malvacearum str. GSPB2388]
gi|410704737|gb|EKQ63219.1| hypothetical protein WS7_03445 [Xanthomonas axonopodis pv.
malvacearum str. GSPB2388]
Length = 202
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 71/155 (45%), Gaps = 34/155 (21%)
Query: 137 QFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNF-GLWLSYIFTGAAANFVSWLILPK 195
+ VT F HA+ HL N+ L+ FG+++E G L+Y AA VS ILP
Sbjct: 42 RLVTYGFIHADLGHLIFNMITLFFFGRVIENVMAQLTGSVLTYPLFYLAALVVS--ILPS 99
Query: 196 --------NAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASA 247
N +S+GASGAV + S+L++ W IL + I A A
Sbjct: 100 YLKNQKNPNYLSLGASGAVSAVLFASILLQ---PWTIILVLFI-------------PAPA 143
Query: 248 GMSGTFIGGYSV-------QSINHIAHLSGALFGV 275
+ F GYS+ INH AHL+GA FGV
Sbjct: 144 ILYAVFYVGYSLWMDRRGGDRINHSAHLAGAAFGV 178
>gi|319654680|ref|ZP_08008759.1| hypothetical protein HMPREF1013_05381 [Bacillus sp. 2_A_57_CT2]
gi|317393596|gb|EFV74355.1| hypothetical protein HMPREF1013_05381 [Bacillus sp. 2_A_57_CT2]
Length = 241
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 44/77 (57%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+++ ++ H+ + H+ N F L +FG ++E G L YI GAAAN + L+ P
Sbjct: 58 YWRLLSPIILHSGFPHVLFNSFSLVLFGPVLERMLGKTRFILLYITAGAAANIATLLLEP 117
Query: 195 KNAVSVGASGAVFGLFA 211
+ VGASGA+FGLF
Sbjct: 118 LTYIHVGASGAIFGLFG 134
>gi|443324104|ref|ZP_21053054.1| putative membrane protein [Xenococcus sp. PCC 7305]
gi|442796111|gb|ELS05431.1| putative membrane protein [Xenococcus sp. PCC 7305]
Length = 227
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 73/158 (46%), Gaps = 19/158 (12%)
Query: 130 HNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVS 189
+ P W+ +++ F H + H+ N+ +L+IFG +E+ G+ + Y+ G A
Sbjct: 63 QSVPEWFTLISSQFLHGGFLHIGFNMLYLWIFGNNIEDSLGHVKFIIFYLVCGVLAGLTH 122
Query: 190 WLILPKNAV-SVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEK---------- 238
W ++ V ++GASGA+ G+ V+ + KIL +L LG F+
Sbjct: 123 WFFGMESLVPTIGASGAIAGVMGAYVI---KYPKAKILTLLPLGIFITTIRIPAIFFLGF 179
Query: 239 -VMEAAQASAGMSGTFIGGYSVQSINHIAHLSGALFGV 275
++ A +S G GG + + AH G +FGV
Sbjct: 180 WFLQQAISSFASLGMEAGG----GVAYWAHAGGFVFGV 213
>gi|309782693|ref|ZP_07677414.1| peptidase, S54 family [Ralstonia sp. 5_7_47FAA]
gi|404397390|ref|ZP_10989181.1| hypothetical protein HMPREF0989_02835 [Ralstonia sp. 5_2_56FAA]
gi|308918471|gb|EFP64147.1| peptidase, S54 family [Ralstonia sp. 5_7_47FAA]
gi|348614003|gb|EGY63566.1| hypothetical protein HMPREF0989_02835 [Ralstonia sp. 5_2_56FAA]
Length = 197
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 73/140 (52%), Gaps = 12/140 (8%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEG---NFGLWLSYIFTGAAAN--FVSW 190
+Q +T AF HAN HL+ N+F LY+FG+ VE G + L+LS I + A A F +
Sbjct: 46 WQPLTYAFLHANGAHLAFNMFGLYLFGRDVERTVGAPRTWQLYLSSILSAAFAQLAFTAL 105
Query: 191 LILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMS 250
ILP V +GASG VFGL ++ + ++ + + +V + + + G+S
Sbjct: 106 SILPAGPV-IGASGGVFGLLLAYAVLFPNRIIVPLIPPIPMPAWVFATLYAIVELTLGVS 164
Query: 251 GTFIGGYSVQSINHIAHLSG 270
GT + ++ H AHL G
Sbjct: 165 GTEV------NVAHFAHLGG 178
>gi|187926585|ref|YP_001892930.1| rhomboid family protein [Ralstonia pickettii 12J]
gi|241666096|ref|YP_002984455.1| rhomboid family protein [Ralstonia pickettii 12D]
gi|187728339|gb|ACD29503.1| Rhomboid family protein [Ralstonia pickettii 12J]
gi|240868123|gb|ACS65783.1| Rhomboid family protein [Ralstonia pickettii 12D]
Length = 197
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 73/140 (52%), Gaps = 12/140 (8%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEG---NFGLWLSYIFTGAAAN--FVSW 190
+Q +T AF HAN HL+ N+F LY+FG+ VE G + L+LS I + A A F +
Sbjct: 46 WQPLTYAFLHANGAHLAFNMFGLYLFGRDVERTVGAPRTWQLYLSSILSAAFAQLAFTAL 105
Query: 191 LILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMS 250
ILP V +GASG VFGL ++ + ++ + + +V + + + G+S
Sbjct: 106 SILPAGPV-IGASGGVFGLLLAYAVLFPNRIIVPLIPPIPMPAWVFATLYAIVELTLGVS 164
Query: 251 GTFIGGYSVQSINHIAHLSG 270
GT + ++ H AHL G
Sbjct: 165 GTEV------NVAHFAHLGG 178
>gi|390562706|ref|ZP_10244884.1| Rhomboid family protein [Nitrolancetus hollandicus Lb]
gi|390172700|emb|CCF84197.1| Rhomboid family protein [Nitrolancetus hollandicus Lb]
Length = 245
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 133 PAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLI 192
P + +T+ F H +W H+ N+ FL+IFG VE+ G+ + Y+ G AA LI
Sbjct: 67 PVYLTILTSMFMHGSWLHVIGNMLFLWIFGDNVEDVMGHVKYLIFYLLGGVAAAVAQTLI 126
Query: 193 LPKNAVS-VGASGAVFGLFA 211
P + + VGASGA+ + A
Sbjct: 127 APDSTIPMVGASGAIAAVMA 146
>gi|408825148|ref|ZP_11210038.1| transmembrane rhomboid family protein [Pseudomonas geniculata N1]
Length = 208
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 69/155 (44%), Gaps = 34/155 (21%)
Query: 137 QFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNF-GLWLSYIFTGAAANFVSWLILPK 195
+ VT F HA+W+HL N+ L+ FG +E G +L+Y A VS ILP
Sbjct: 44 RLVTYGFIHADWSHLIFNMITLFFFGGFIESVMVQLTGSYLTYPAFYIGALLVS--ILPS 101
Query: 196 --------NAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASA 247
N +S+GASGAV + +L+K W IL I A A
Sbjct: 102 YLKNQKNPNYLSLGASGAVSAVLFAFILIK---PWSIILVFFI-------------PAPA 145
Query: 248 GMSGTFIGGYSV-------QSINHIAHLSGALFGV 275
+ F GYS+ INH AHL+GA FGV
Sbjct: 146 IVYAAFYVGYSIWMDKRGGDRINHSAHLAGAAFGV 180
>gi|51893133|ref|YP_075824.1| hypothetical protein STH1995 [Symbiobacterium thermophilum IAM
14863]
gi|51856822|dbj|BAD40980.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
14863]
Length = 230
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 101/221 (45%), Gaps = 41/221 (18%)
Query: 86 DKPEERRKPKKSVNGVFW-IILLNLGLYVADHVFQVRSIKSLYLYHNFP----------A 134
D P RR+P V W +I LN +++ + + +L NF A
Sbjct: 7 DSPAVRRRPW-----VNWALIALNFAVFLLE---MASPVTGEWLIGNFALRPTALLSPDA 58
Query: 135 W--------YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAAN 186
W T+AF H +W H+ N+ +L+IFG +E+ G+ L Y+ A AN
Sbjct: 59 WAASGGWPLVTLFTSAFLHGSWGHVLGNMLYLWIFGDNLEDRLGHGRYLLFYVLCIALAN 118
Query: 187 FVSWLILPKNAV-SVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEA--- 242
+ P + + ++GASGAV G+ +L S+ ++L ++ +G FV + A
Sbjct: 119 LAHAVANPTSPIPTIGASGAVAGVLGGYIL---SFPRARVLALVPIGAFVPAVRVPAWVF 175
Query: 243 ------AQASAGMSGTFIGGYSVQSINHIAHLSGALFGVFL 277
Q ++G++ ++ + Q++ AH++G L GV L
Sbjct: 176 LGLWFFVQLASGLAPIWLHDLT-QTVAFWAHINGFLSGVAL 215
>gi|406658742|ref|ZP_11066882.1| rhomboid family integral membrane protein [Streptococcus iniae
9117]
gi|405578957|gb|EKB53071.1| rhomboid family integral membrane protein [Streptococcus iniae
9117]
Length = 225
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
++ VT F H WNH N+F LY G+L E G+ ++ Y+ +G N + +I P
Sbjct: 60 WRLVTPIFIHIGWNHFLINVFTLYFVGQLAESLFGSKQFFVIYLLSGIMGNLFTLIITP- 118
Query: 196 NAVSVGASGAVFGLFA 211
N V+ GAS ++FGLF
Sbjct: 119 NIVAAGASTSLFGLFT 134
>gi|254524738|ref|ZP_05136793.1| rhomboid family protein [Stenotrophomonas sp. SKA14]
gi|219722329|gb|EED40854.1| rhomboid family protein [Stenotrophomonas sp. SKA14]
Length = 208
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 69/155 (44%), Gaps = 34/155 (21%)
Query: 137 QFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNF-GLWLSYIFTGAAANFVSWLILPK 195
+ VT F HA+W+HL N+ L+ FG +E G +L+Y A VS ILP
Sbjct: 44 RLVTYGFIHADWSHLIFNMITLFFFGGFIESVMVELTGSYLTYPAFYIGALLVS--ILPS 101
Query: 196 --------NAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASA 247
N +S+GASGAV + +L+K W IL I A A
Sbjct: 102 YLKNQKNPNYLSLGASGAVSAVLFAFILIK---PWSIILVFFI-------------PAPA 145
Query: 248 GMSGTFIGGYSV-------QSINHIAHLSGALFGV 275
+ F GYS+ INH AHL+GA FGV
Sbjct: 146 IVYAAFYVGYSIWMDKRGGDRINHSAHLAGAAFGV 180
>gi|435851157|ref|YP_007312743.1| putative membrane protein [Methanomethylovorans hollandica DSM
15978]
gi|433661787|gb|AGB49213.1| putative membrane protein [Methanomethylovorans hollandica DSM
15978]
Length = 290
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 70/144 (48%), Gaps = 13/144 (9%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTG--AAANFVSWLIL 193
+ VT F H ++ HL N+ L+ FG+ +E G W Y +G AA + +
Sbjct: 136 WTIVTHMFLHVDFGHLFFNMLVLFFFGRELENRIGKSRFWGVYFVSGIVAAIGYSLTVAN 195
Query: 194 PKNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTF 253
P +AV VGASGA+ G+FA L ++ D R I F+ K+ A A +
Sbjct: 196 PYSAV-VGASGAILGVFA--TLTVLAPDMR------IYVYFIPMKIKYALLLFALLDFAM 246
Query: 254 IGGYSVQSINHIAHLSGALFGVFL 277
+G S + H AHLSG L G+F+
Sbjct: 247 MG--SSDMVAHTAHLSGMLVGLFM 268
>gi|427427423|ref|ZP_18917467.1| rhomboid family serine protease [Caenispirillum salinarum AK4]
gi|425883349|gb|EKV32025.1| rhomboid family serine protease [Caenispirillum salinarum AK4]
Length = 273
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 133 PAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLI 192
P W VT+ F H W HL NL +L+IFG VE+ G+ Y+ G AA L
Sbjct: 69 PGWLTVVTSMFMHGGWLHLGGNLLYLWIFGNNVEDSMGHGRFIAFYLVCGTAAALAQSLP 128
Query: 193 LPKNAVS-VGASGAVFGLFA 211
P + + VGASGA+ G+
Sbjct: 129 APFSEIPMVGASGAIAGVLG 148
>gi|222151439|ref|YP_002560595.1| hypothetical protein MCCL_1192 [Macrococcus caseolyticus JCSC5402]
gi|222120564|dbj|BAH17899.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
Length = 482
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 85/185 (45%), Gaps = 23/185 (12%)
Query: 101 VFWIILLNLGLY----VADHVFQVRSI--KSLYLYHNF--PAWYQFVTAAFCHANWNHLS 152
+ IILLN+ ++ + H+ +V I K + NF +Y+ +T+ F H + HL
Sbjct: 161 TYLIILLNVVIFLLMSIVQHIHEVEMIIDKGGLTHFNFVHGDYYRVITSIFIHFDVQHLL 220
Query: 153 SNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFAI 212
N+ L IFGKLVE + Y G N +S L ++SVGASGA+ L I
Sbjct: 221 YNMMTLLIFGKLVEYLYPRWQYLCIYFIGGIIGNLIS-LTFDNVSISVGASGAICAL--I 277
Query: 213 SVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQSINHIAHLSGAL 272
L+ ++ G+F EK Q G+ IG +++NH AH G
Sbjct: 278 GALMS---------HLVFSGKF--EKKF-LVQTFIGILIFLIGSAIFENVNHYAHFGGLF 325
Query: 273 FGVFL 277
G+F+
Sbjct: 326 GGMFI 330
>gi|218441186|ref|YP_002379515.1| rhomboid family protein [Cyanothece sp. PCC 7424]
gi|218173914|gb|ACK72647.1| Rhomboid family protein [Cyanothece sp. PCC 7424]
Length = 234
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 32/166 (19%)
Query: 133 PAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLI 192
PA+ +T+ F H + H+ N+ FL++FG +EE+ G + Y+ G A WL
Sbjct: 67 PAFLTLITSQFLHGGFLHIGGNMLFLWVFGNNIEEQLGRIKYIIFYLGCGILAGLSQWLF 126
Query: 193 LPKNAV-SVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEA--------- 242
++ + S+GASGA+ G+ ++ + ++L ++ LG F+ + A
Sbjct: 127 SMQSEIPSLGASGAIAGILGAYII---RFPKARVLTLVPLGFFITTLYIPAIFFLGFWFF 183
Query: 243 -----------AQASAGMSGTFIGGYSVQSINHIAHLSGALFGVFL 277
A A+ GM G GG + + AH G +FGV L
Sbjct: 184 QQALYGVASLQAPANIGMEG---GG-----VAYWAHAGGFVFGVIL 221
>gi|387929721|ref|ZP_10132398.1| serine protease of Rhomboid family [Bacillus methanolicus PB1]
gi|387586539|gb|EIJ78863.1| serine protease of Rhomboid family [Bacillus methanolicus PB1]
Length = 518
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++F T F H HL N LY G +VE GN L Y+F G A + S++ P
Sbjct: 227 WWRFFTPIFLHVGLLHLLMNTLSLYYLGTVVERLYGNVRFLLIYLFAGFAGSLTSFVFSP 286
Query: 195 KNAVSVGASGAVFGLFA 211
++S GASGA+FG F
Sbjct: 287 --SLSAGASGAIFGCFG 301
>gi|167038270|ref|YP_001665848.1| rhomboid family protein [Thermoanaerobacter pseudethanolicus ATCC
33223]
gi|320116677|ref|YP_004186836.1| Rhomboid family protein [Thermoanaerobacter brockii subsp. finnii
Ako-1]
gi|166857104|gb|ABY95512.1| Rhomboid family protein [Thermoanaerobacter pseudethanolicus ATCC
33223]
gi|319929768|gb|ADV80453.1| Rhomboid family protein [Thermoanaerobacter brockii subsp. finnii
Ako-1]
Length = 227
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 72/150 (48%), Gaps = 8/150 (5%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
Y F+T+ F H N HL SN++ L++FG VE+ G+ + Y+ +G A + P
Sbjct: 69 YPFITSMFLHGNTLHLISNMWILWLFGDNVEDRMGHIRFLIFYLLSGVIAGVFHLVFNPL 128
Query: 196 NAVS-VGASGAVFG-------LFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASA 247
+ V VGASGA+ G LF + ++ + + + L + V + Q +
Sbjct: 129 SQVPVVGASGAIAGIMGAYFVLFPSARIITLVPSFFLVPVFLPIPAVVYLFLWFLTQLYS 188
Query: 248 GMSGTFIGGYSVQSINHIAHLSGALFGVFL 277
G + IGG +V I AH+ G + GV L
Sbjct: 189 GTVYSVIGGTTVGGIAWWAHIGGFISGVLL 218
>gi|304403852|ref|ZP_07385514.1| Rhomboid family protein [Paenibacillus curdlanolyticus YK9]
gi|304346830|gb|EFM12662.1| Rhomboid family protein [Paenibacillus curdlanolyticus YK9]
Length = 204
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 62/126 (49%), Gaps = 10/126 (7%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
+++VTA F HA + HL NL L IF +E G+ L +I TG N S L
Sbjct: 65 WRYVTAIFLHAGFMHLFYNLISLIIFAPPLERLLGHVRYGLFFIVTGVVGNLFSALFHHG 124
Query: 196 NAVSVGASGAVFGLFA----ISVLVKMSWD---WRKILEVLILG---QFVVEKVMEAAQA 245
+SVGASGA++G++ +SV K D + + +LI G F+V + A
Sbjct: 125 EVLSVGASGAIYGVYGAFLFLSVFGKHRLDEGSRKTVYSILIFGLIYSFLVPTINIWAHV 184
Query: 246 SAGMSG 251
G++G
Sbjct: 185 GGGIAG 190
>gi|345851676|ref|ZP_08804644.1| hypothetical protein SZN_17977 [Streptomyces zinciresistens K42]
gi|345636882|gb|EGX58421.1| hypothetical protein SZN_17977 [Streptomyces zinciresistens K42]
Length = 295
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 74/144 (51%), Gaps = 18/144 (12%)
Query: 104 IILLNLGLYVADHVFQVRSIK-SLYLYHNFP-------------AWYQFVTAAFCHANWN 149
++ +NL +++A V +S++ LYL ++P W++ VT+ F H
Sbjct: 88 LVAVNLAVFIA--VQSSQSLRNDLYLIGSWPPAPFQPTQGVAEGEWWRLVTSMFTHEAVW 145
Query: 150 HLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGL 209
H + N+ L+ G +E G Y +G A + ++L+ + S+GASGA+FGL
Sbjct: 146 HFAFNMLSLWWLGGPLEAALGRARYLALYFCSGLAGSAFTYLLADPHTASLGASGAIFGL 205
Query: 210 FAIS--VLVKMSWDWRKILEVLIL 231
F + +L ++ +D R I+ +L++
Sbjct: 206 FGATAVLLRRLQYDMRPIIALLVI 229
>gi|345022094|ref|ZP_08785707.1| hypothetical protein OTW25_12319 [Ornithinibacillus scapharcae
TW25]
Length = 517
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ VT+ F H H SN+ FLY FG L E+ G+ + Y+ G A + S+ +
Sbjct: 229 WWRVVTSMFLHIGLFHFISNMLFLYYFGSLAEKIYGSLRFFFIYMLAGIAGSVASFAFVT 288
Query: 195 KNAVSVGASGAVFGLFA 211
+S GASGA++GLF
Sbjct: 289 N--LSAGASGALYGLFG 303
>gi|147678997|ref|YP_001213212.1| hypothetical protein PTH_2662 [Pelotomaculum thermopropionicum SI]
gi|146275094|dbj|BAF60843.1| Uncharacterized membrane protein [Pelotomaculum thermopropionicum
SI]
Length = 189
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 70/151 (46%), Gaps = 15/151 (9%)
Query: 137 QFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKN 196
+ TA F H W H+ SN+ +L+IFG VE+ G+F + Y+ TG A L P +
Sbjct: 31 RLTTAMFLHGGWFHVLSNMLYLWIFGDNVEDRMGHFKYLVFYLLTGYIATIAHVLYTPMS 90
Query: 197 AVS-VGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFV---------VEKVMEAAQAS 246
+GASGA+ G+ +++ ++ V I Q V + +++ +
Sbjct: 91 KSPLIGASGAIAGVLGAYLILFPGARVLTLIFVFIFIQVVPIPAVIFLGIWFILQVLNGT 150
Query: 247 AGMSGTFIGGYSVQSINHIAHLSGALFGVFL 277
AG+SG Q + AH+ G + G+ L
Sbjct: 151 AGLSGQ-----VAQGVAFWAHIGGFVAGMLL 176
>gi|418710371|ref|ZP_13271142.1| peptidase, S54 family [Leptospira interrogans serovar Grippotyphosa
str. UI 08368]
gi|418725109|ref|ZP_13283785.1| peptidase, S54 family [Leptospira interrogans str. UI 12621]
gi|409961491|gb|EKO25236.1| peptidase, S54 family [Leptospira interrogans str. UI 12621]
gi|410769307|gb|EKR44549.1| peptidase, S54 family [Leptospira interrogans serovar Grippotyphosa
str. UI 08368]
Length = 514
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 74/148 (50%), Gaps = 19/148 (12%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ VT F HA + HL N F L I VE G + YIF+G + S + P
Sbjct: 374 WWRLVTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLILYIFSGLCGSLASIVWYP 433
Query: 195 KNAVSVGASGAVFGLF-AISVLVKMS---WDWRKILEVLILGQFVVEKVMEAAQASAGMS 250
N +SVGASGA+FGL+ AI LV M D +K + ++I+ F++ G+
Sbjct: 434 -NTISVGASGAIFGLYGAILGLVLMDAFPRDDKKNVLIMIV-TFIL----------TGLL 481
Query: 251 GTFIGGYSVQSINHIAHL-SGALFGVFL 277
GG + + HI L SGAL G+ L
Sbjct: 482 WGLFGG--IDNAAHIGGLVSGALSGIIL 507
>gi|381152820|ref|ZP_09864689.1| putative membrane protein [Methylomicrobium album BG8]
gi|380884792|gb|EIC30669.1| putative membrane protein [Methylomicrobium album BG8]
Length = 239
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 132 FPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWL 191
F A+ F+T F H +W HL N++FL+IFG VE+ G+ Y+ G A + W
Sbjct: 66 FDAYLSFLTNLFLHGSWFHLIINMWFLWIFGDNVEDRMGHLSFLAFYLLCGLVATALQWY 125
Query: 192 ILPKNAVS-VGASGAVFGLFA 211
P A+ VGASG + G+ A
Sbjct: 126 FDPYLAIPVVGASGPIAGVLA 146
>gi|158335670|ref|YP_001516842.1| rhomboid family protein [Acaryochloris marina MBIC11017]
gi|158305911|gb|ABW27528.1| rhomboid family protein [Acaryochloris marina MBIC11017]
Length = 239
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 70/156 (44%), Gaps = 16/156 (10%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W +T+ F H + H++ N+ +L+IFG VEE+ G L Y+ GA A W P
Sbjct: 68 WGTLITSQFLHGGFLHVAGNMLYLWIFGNNVEEQLGRIRFLLFYLACGALAVLTQWFFNP 127
Query: 195 KNAV-SVGASGAVFGLFAISVLVKMSWDWRKILEVLILG----QFVVEKVM--------E 241
+ V S+GASGA+ G+ + + +IL ++ LG F + ++ +
Sbjct: 128 LSVVPSLGASGAIAGVMGAYIF---RFPQVRILTLVPLGIYLTTFRIPAILYLGFWFLQQ 184
Query: 242 AAQASAGMSGTFIGGYSVQSINHIAHLSGALFGVFL 277
A A + G I + AH G +FG L
Sbjct: 185 AFYGVASLDAPVTVGMEAGGIAYWAHAGGFVFGAIL 220
>gi|456387124|gb|EMF52637.1| hypothetical protein SBD_5713 [Streptomyces bottropensis ATCC
25435]
Length = 297
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ VT+ F H + H+ N+ L+ G +E G Y +G A + +++L+
Sbjct: 133 WYRLVTSMFLHGSVTHILFNMLSLWWIGGPLEAALGRARYLTLYFVSGLAGSALTYLLAA 192
Query: 195 KNAVSVGASGAVFGLFAIS--VLVKMSWDWR 223
N S+GASGA+FGLF + ++ ++ +D R
Sbjct: 193 PNQPSLGASGAIFGLFGATGVLMRRLRYDMR 223
>gi|190575121|ref|YP_001972966.1| transmembrane rhomboid family protein [Stenotrophomonas maltophilia
K279a]
gi|424669431|ref|ZP_18106456.1| hypothetical protein A1OC_03036 [Stenotrophomonas maltophilia
Ab55555]
gi|190013043|emb|CAQ46675.1| putative transmembrane rhomboid family protein [Stenotrophomonas
maltophilia K279a]
gi|401071502|gb|EJP80013.1| hypothetical protein A1OC_03036 [Stenotrophomonas maltophilia
Ab55555]
gi|456736675|gb|EMF61401.1| Hypothetical protein EPM1_2208 [Stenotrophomonas maltophilia EPM1]
Length = 208
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 69/155 (44%), Gaps = 34/155 (21%)
Query: 137 QFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNF-GLWLSYIFTGAAANFVSWLILPK 195
+ VT F HA+W+HL N+ L+ FG +E G +L+Y A VS ILP
Sbjct: 44 RLVTYGFIHADWSHLIFNMITLFFFGGFIESVMVQLTGSYLTYPAFYIGALLVS--ILPS 101
Query: 196 --------NAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASA 247
N +S+GASGAV + +L+K W IL I A A
Sbjct: 102 YLKNQKNPNYLSLGASGAVSAVLFAFILIK---PWSIILVFFI-------------PAPA 145
Query: 248 GMSGTFIGGYSV-------QSINHIAHLSGALFGV 275
+ F GYS+ INH AHL+GA FGV
Sbjct: 146 IVYAAFYVGYSIWMDKRGGDRINHSAHLAGAAFGV 180
>gi|358061502|ref|ZP_09148156.1| hypothetical protein HMPREF9473_00218 [Clostridium hathewayi
WAL-18680]
gi|356700261|gb|EHI61767.1| hypothetical protein HMPREF9473_00218 [Clostridium hathewayi
WAL-18680]
Length = 206
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 71/146 (48%), Gaps = 16/146 (10%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+Y+ +T+ F H NH+ +N+ L+I G +E G+ Y+ G AN S +
Sbjct: 56 YYRLLTSIFMHFGINHIVNNMLMLFILGDNMERALGHIKYLFFYLICGVGANIASMTVNV 115
Query: 195 KN---AVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSG 251
N VS GASGA+FG+ +L ++ + + LE L Q VV +
Sbjct: 116 MNKELVVSAGASGAIFGVIG-GLLYAVAVNHGR-LEDLSTRQLVVVILC----------- 162
Query: 252 TFIGGYSVQSINHIAHLSGALFGVFL 277
+ G++ ++++AH++G L G+ +
Sbjct: 163 SLYFGFTSGGVDNVAHIAGLLIGIVM 188
>gi|404406119|ref|ZP_10997703.1| hypothetical protein AJC13_11845 [Alistipes sp. JC136]
Length = 200
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 87/197 (44%), Gaps = 45/197 (22%)
Query: 104 IILLNLGLYVADHVF----QVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLY 159
+I++N+ +Y+A + Q+ +L L F YQF+T F HAN+ H+ N+F L+
Sbjct: 14 LIIINVLVYMATALLPVGNQIMEYCALSLGTPFFHTYQFITYMFLHANFEHIFFNMFALW 73
Query: 160 IFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLI------LPKNAVSVGASGAVFGLF-AI 212
+FG+ +E E G+ Y+ G A + +L LP + VGASGAV GL A
Sbjct: 74 MFGRTLEYELGSQRFLTFYMVCGIGAALIQYLTALAFGELP--LLLVGASGAVMGLLLAF 131
Query: 213 SVL------------VKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQ 260
V+ + M W I+ +I F+G V
Sbjct: 132 GVMHPNAVIMLLIPPIPMKAKWFVIIYAVI--------------------ELFLGWRGVG 171
Query: 261 SINHIAHLSGALFGVFL 277
++ H AH+ G L+G L
Sbjct: 172 NVAHFAHVGGMLWGFLL 188
>gi|374850394|dbj|BAL53384.1| rhomboid family protein [uncultured candidate division OP1
bacterium]
gi|374856804|dbj|BAL59657.1| rhomboid family protein [uncultured candidate division OP1
bacterium]
Length = 269
Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 132 FPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWL 191
F W +TA F HA + H+ N+++L+IFG VE+ G G L Y+ +G AA F +
Sbjct: 106 FAVWLTLLTAMFMHAGFWHILGNMWYLWIFGDNVEDVFGRVGYVLFYLLSGLAAAFAQIV 165
Query: 192 ILPKNAVS-VGASGAVFGL 209
P + VGASGA+ G+
Sbjct: 166 TNPHTVIPMVGASGAISGV 184
>gi|46199412|ref|YP_005079.1| hypothetical protein TTC1110 [Thermus thermophilus HB27]
gi|55981443|ref|YP_144740.1| hypothetical protein TTHA1474 [Thermus thermophilus HB8]
gi|46197037|gb|AAS81452.1| hypothetical membrane spanning protein [Thermus thermophilus HB27]
gi|55772856|dbj|BAD71297.1| conserved hypothetical protein [Thermus thermophilus HB8]
Length = 210
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 66/153 (43%), Gaps = 29/153 (18%)
Query: 55 KLRPLRHPSLTLRSRLVCNMSGSDMISQLELDKPEERRKPKKSVNGVFWIILLNLGLYVA 114
+ P R P+L +RS +V N++ LL L L
Sbjct: 6 DINPARRPALVVRSLVVLNVAA----------------------------FLLELLLGPT 37
Query: 115 DHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGL 174
V ++ + +L+ Y+ +T+ F H HL SN++FL++FG VE+ G
Sbjct: 38 QVVAKMGFVPALFFQDPLGEGYRILTSMFLHGGLFHLLSNMWFLWVFGDNVEDRMGGERF 97
Query: 175 WLSYIFTGAAANFVSWLILPKNAVS-VGASGAV 206
L Y+ G AA L +P + V +GASGAV
Sbjct: 98 LLFYLLGGVAAALAQALFMPASTVPMIGASGAV 130
>gi|384918485|ref|ZP_10018560.1| hypothetical protein C357_05366 [Citreicella sp. 357]
gi|384467659|gb|EIE52129.1| hypothetical protein C357_05366 [Citreicella sp. 357]
Length = 261
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 140 TAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAV- 198
T+ F H W HL+ N+ FLYIFG VE+E G+ Y+ G A ++ P ++V
Sbjct: 80 TSMFLHGGWMHLAGNMLFLYIFGDNVEDELGHLTYLGFYLGCGVIAALAQYVTQPFSSVP 139
Query: 199 SVGASGAVFGLFAISVLV 216
+VGASGA+ G+ +L+
Sbjct: 140 TVGASGAIAGVMGGYLLM 157
>gi|383320817|ref|YP_005381658.1| hypothetical protein Mtc_2409 [Methanocella conradii HZ254]
gi|379322187|gb|AFD01140.1| putative membrane protein [Methanocella conradii HZ254]
Length = 261
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 66/139 (47%), Gaps = 11/139 (7%)
Query: 138 FVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNA 197
VT+ F HA HL N+ L+ FG L+E + G Y +G A V I P +A
Sbjct: 114 LVTSMFLHAGLAHLFFNMLALFFFGPLLERRIESKGFLALYFGSGILAGLVQVFIFPTSA 173
Query: 198 VSVGASGAVFGLF-AISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGG 256
V +GASGA+FG+ A++VL+ D IL + L V + ++GT G
Sbjct: 174 V-IGASGAIFGVLGALTVLMP---DLTVILYFVPLKMVYVTILFAILDLYPMLTGTPDG- 228
Query: 257 YSVQSINHIAHLSGALFGV 275
I H AHL+G G+
Sbjct: 229 -----IAHAAHLTGLAAGL 242
>gi|163838783|ref|YP_001623188.1| rhomboid family membrane protein [Renibacterium salmoninarum ATCC
33209]
gi|162952259|gb|ABY21774.1| rhomboid family membrane protein [Renibacterium salmoninarum ATCC
33209]
Length = 290
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 60/100 (60%), Gaps = 4/100 (4%)
Query: 136 YQFVTAAFCHAN--WNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLIL 193
++ +T+ F H+ H+ N++ LYI G ++E G + ++ +G A + LI
Sbjct: 119 WRILTSIFTHSTTFLPHILFNMYSLYILGTVLEPVLGRLRFFALFLVSGLAGSVGVLLIA 178
Query: 194 PKNAVSVGASGAVFGLF-AISVL-VKMSWDWRKILEVLIL 231
P ++V VGASGA+FGLF A+ VL +K D R+I+ +L++
Sbjct: 179 PVDSVVVGASGAIFGLFGALFVLQLKRRGDLRQIIVLLVV 218
>gi|138896022|ref|YP_001126475.1| hypothetical protein GTNG_2385 [Geobacillus thermodenitrificans
NG80-2]
gi|134267535|gb|ABO67730.1| Conserved hypothetical protein [Geobacillus thermodenitrificans
NG80-2]
Length = 386
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++F+T F H + HL +N F LY G VE G+ L Y G S+L P
Sbjct: 224 WWRFLTPMFLHIGFLHLLTNTFALYYLGITVERLYGSLRFLLIYTTAGFFGTLASFLFTP 283
Query: 195 KNAVSVGASGAVFGLFA 211
++S GASGA+FGLF
Sbjct: 284 --SISAGASGAIFGLFG 298
>gi|120406695|ref|YP_956524.1| rhomboid family protein [Mycobacterium vanbaalenii PYR-1]
gi|119959513|gb|ABM16518.1| Rhomboid family protein [Mycobacterium vanbaalenii PYR-1]
Length = 290
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 57/99 (57%), Gaps = 5/99 (5%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
Y+ +T+AF H + H++ N+ LY G +E G Y+F+ + + +L L
Sbjct: 118 YRLLTSAFLHFSVTHIAFNMLALYFVGAPLEFALGRLRFVALYLFSALGGSVLVYL-LTF 176
Query: 196 NAVSVGASGAVFGLFAISVLV--KMSWDWRKILEVLILG 232
NA++ GASGAVFGLF + +V +++ D R + V+I+G
Sbjct: 177 NALTAGASGAVFGLFGATFVVGKRLNMDVRSV--VMIIG 213
>gi|346993767|ref|ZP_08861839.1| rhomboid family protein [Ruegeria sp. TW15]
Length = 247
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 137 QFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKN 196
VT+ F H W HL+ N+ FL+IFG +E+E G+ + Y+ G A + + P +
Sbjct: 63 TLVTSMFLHGGWMHLAGNMLFLWIFGDNLEDEMGHVLFLVFYLLAGIGAGLIHVVSAPGS 122
Query: 197 AV-SVGASGAVFGLFA 211
V ++GASGA+ G+
Sbjct: 123 LVPTIGASGAIAGVMG 138
>gi|421111197|ref|ZP_15571676.1| peptidase, S54 family [Leptospira santarosai str. JET]
gi|410803379|gb|EKS09518.1| peptidase, S54 family [Leptospira santarosai str. JET]
Length = 197
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 68/145 (46%), Gaps = 12/145 (8%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+Y +T+ F HA+W HL N+ Y FGK +E G L Y+ T A + +SW
Sbjct: 40 YYTLLTSGFIHADWMHLIFNMISFYSFGKNLETTVGPIKFLLFYLGTILATSVISWRKNL 99
Query: 195 KNAV--SVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGT 252
+N + ++GASG V G+ ++L S + F+ + A A + T
Sbjct: 100 ENPLYATLGASGGVCGVLFATILFYPSLS--------LYMMFIPIPIPGAIYAVLYLVYT 151
Query: 253 FIGGYSVQS--INHIAHLSGALFGV 275
+ S S INH AHL GAL G+
Sbjct: 152 YFSSKSGHSDGINHDAHLWGALCGI 176
>gi|307154690|ref|YP_003890074.1| rhomboid family protein [Cyanothece sp. PCC 7822]
gi|306984918|gb|ADN16799.1| Rhomboid family protein [Cyanothece sp. PCC 7822]
Length = 514
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 83/176 (47%), Gaps = 26/176 (14%)
Query: 104 IILLNLGLYVADHVFQVRSIKSLYLYHNFPA----------WYQFVTAAFCHANWNHLSS 153
+I LNLG + A ++Q S ++L + +N W++ VTA F H W HL+S
Sbjct: 323 LIALNLGAF-ALEIYQGGS-ENLDILYNLGGLVPQEILAGQWWRVVTANFLHYGWLHLAS 380
Query: 154 NLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAA----NFVSWLILPKNAVSVGASGAVFGL 209
N+ LY G+ VE G F L Y F+G A + +S + + VGAS + GL
Sbjct: 381 NMMGLYFVGRFVELALGKFRYLLVYFFSGVGAMTLFSLLSIKLGNTGEILVGASAGIMGL 440
Query: 210 FA--ISVLVKMSWDWR--------KILEVLILGQFVVEKVMEAAQASAGMSGTFIG 255
++ V+ W + +++ V++ QF+ ++++ + + G IG
Sbjct: 441 VGGIFALFVRDWWQEKSPIATKRLQVIFVVVCLQFIFDRLVPEVSSLSHFLGLVIG 496
>gi|359688962|ref|ZP_09258963.1| hypothetical protein LlicsVM_11275 [Leptospira licerasiae serovar
Varillal str. MMD0835]
gi|418748370|ref|ZP_13304662.1| peptidase, S54 family [Leptospira licerasiae str. MMD4847]
gi|418756768|ref|ZP_13312956.1| peptidase, S54 family [Leptospira licerasiae serovar Varillal str.
VAR 010]
gi|384116439|gb|EIE02696.1| peptidase, S54 family [Leptospira licerasiae serovar Varillal str.
VAR 010]
gi|404275439|gb|EJZ42753.1| peptidase, S54 family [Leptospira licerasiae str. MMD4847]
Length = 220
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 52/86 (60%), Gaps = 6/86 (6%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAAN-----FVSW 190
++++ F HA++ HL N+ FL+ G++VE + G WL + F GA + FV
Sbjct: 48 WKWIGMVFLHADFTHLFWNMIFLFFLGRIVEYKVGQ-AKWLLFFFMGALVSGGLDSFVRG 106
Query: 191 LILPKNAVSVGASGAVFGLFAISVLV 216
+IL +N ++GASGAV GL A++ L+
Sbjct: 107 MILGENQPAIGASGAVSGLAAVAALL 132
>gi|194366439|ref|YP_002029049.1| rhomboid family protein [Stenotrophomonas maltophilia R551-3]
gi|194349243|gb|ACF52366.1| Rhomboid family protein [Stenotrophomonas maltophilia R551-3]
Length = 208
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 69/155 (44%), Gaps = 34/155 (21%)
Query: 137 QFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNF-GLWLSYIFTGAAANFVSWLILPK 195
+ VT F HA+W+HL N+ L+ FG +E G +L+Y A VS ILP
Sbjct: 44 RLVTYGFIHADWSHLIFNMITLFFFGGFIESVMVQLTGSYLTYPAFYIGALVVS--ILPS 101
Query: 196 --------NAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASA 247
N +S+GASGAV + +L+K W IL I A A
Sbjct: 102 YLKNQKNPNYLSLGASGAVSAVLFAFILIK---PWSIILVFFI-------------PAPA 145
Query: 248 GMSGTFIGGYSV-------QSINHIAHLSGALFGV 275
+ F GYS+ INH AHL+GA FGV
Sbjct: 146 IVYAAFYVGYSIWMDKRGGDRINHSAHLAGAAFGV 180
>gi|346306942|ref|ZP_08849090.1| hypothetical protein HMPREF9457_00799 [Dorea formicigenerans
4_6_53AFAA]
gi|345907306|gb|EGX77017.1| hypothetical protein HMPREF9457_00799 [Dorea formicigenerans
4_6_53AFAA]
Length = 199
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 69/150 (46%), Gaps = 16/150 (10%)
Query: 131 NFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVS- 189
N +Y +T+ F H ++HL +N+ L + G +E E G Y+ +G N VS
Sbjct: 50 NGERYYTLITSMFLHFGFSHLMNNMVMLLVIGYSLEPEIGKIRFLFIYLGSGLMGNLVSA 109
Query: 190 WLILPKN--AVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASA 247
W + + AVS GASGA+FG+ + V + R V E A
Sbjct: 110 WFDVSQGSYAVSAGASGAIFGIVGALLYVAIRNHGR-----------VGEISTRGLVLMA 158
Query: 248 GMSGTFIGGYSVQSINHIAHLSGALFGVFL 277
G+S + G++ Q +++ AH+ G + G L
Sbjct: 159 GLSLYY--GFTAQGVDNAAHIGGLISGFLL 186
>gi|291561790|emb|CBL40590.1| Uncharacterized membrane protein (homolog of Drosophila rhomboid)
[butyrate-producing bacterium SS3/4]
Length = 206
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 15/145 (10%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+Y+ +TA F H H+ +N+ L++ G +E G+ + Y+ G +N+VS +
Sbjct: 55 YYRLLTAMFMHFGIRHIMNNMLVLFVIGDNLERALGHVKYLIFYLLCGIGSNWVSMMAHT 114
Query: 195 KNA--VSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGT 252
+ VS GASGA+FG+ + L+ + R LE L Q V+ +
Sbjct: 115 ADTMTVSAGASGAIFGV--VGGLLYVVTANRGQLEDLNTRQLVIMIFF-----------S 161
Query: 253 FIGGYSVQSINHIAHLSGALFGVFL 277
GY+ +++IAHLSG + G L
Sbjct: 162 LYLGYTSTGVDNIAHLSGLVIGFVL 186
>gi|291278649|ref|YP_003495484.1| rhomboid family protein [Deferribacter desulfuricans SSM1]
gi|290753351|dbj|BAI79728.1| rhomboid family protein [Deferribacter desulfuricans SSM1]
Length = 241
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 77/153 (50%), Gaps = 18/153 (11%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
++ F T F H +W HL SN++ LYIFG VE+ G+F + Y+ +G AA+ ++
Sbjct: 69 YWPFFTNMFLHGSWFHLISNMWTLYIFGDNVEDRLGHFRYLIFYLLSGIAASITHFVFNA 128
Query: 195 KNAV-SVGASGAVFGLF-AISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQA------- 245
+ V +VGASGA+ G+ A V+ S KI+ ++ + F + E
Sbjct: 129 DSVVPAVGASGAIAGVMGAYFVMFPFS----KIITLIPI--FFIPLFFEIPAVVFLGFWF 182
Query: 246 -SAGMSGTF--IGGYSVQSINHIAHLSGALFGV 275
S +SGTF + + I AH+ G +FG+
Sbjct: 183 FSQVVSGTFTLVANQNATGIAWWAHIGGFVFGM 215
>gi|17232329|ref|NP_488877.1| hypothetical protein alr4837 [Nostoc sp. PCC 7120]
gi|17133974|dbj|BAB76536.1| alr4837 [Nostoc sp. PCC 7120]
Length = 239
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 60/114 (52%), Gaps = 4/114 (3%)
Query: 122 SIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFT 181
S + ++ P W +T+ F H + HL+ N+ FL+IFG VEE+ G+ L Y+
Sbjct: 56 SFAGVSVHQPVPEWATLITSQFLHGGFLHLAGNMLFLWIFGNNVEEKLGHARYLLFYLAC 115
Query: 182 GAAANFVSWLILPKNAV-SVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQF 234
G A+ W +++ S+GASGA+ G+ +L + +IL V+ LG F
Sbjct: 116 GILASLSQWYFSQDSSIPSLGASGAIAGVMGAYIL---RFPNAEILGVVPLGFF 166
>gi|138893878|ref|YP_001124331.1| hypothetical protein GTNG_0202 [Geobacillus thermodenitrificans
NG80-2]
gi|134265391|gb|ABO65586.1| Conserved hypothetical protein [Geobacillus thermodenitrificans
NG80-2]
Length = 205
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 44/78 (56%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+++ ++ H ++NH+++N L++FG +E G L YI G AN + L+LP
Sbjct: 58 YWRLISPLVLHYDFNHMAANSLSLWLFGPWLERALGKGKFLLLYIGGGVGANIATVLLLP 117
Query: 195 KNAVSVGASGAVFGLFAI 212
VGASGA+F LF +
Sbjct: 118 PMYTHVGASGAIFALFGM 135
>gi|402772709|ref|YP_006592246.1| rhomboid family protein [Methylocystis sp. SC2]
gi|401774729|emb|CCJ07595.1| Rhomboid family protein [Methylocystis sp. SC2]
Length = 272
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 133 PAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLI 192
P VTA F H++W HL SN+ FLY+FG VE+ G+ L Y+ G A+
Sbjct: 70 PPALTLVTALFFHSSWMHLGSNMLFLYVFGDNVEDAMGSLHYLLFYLSCGVASGVFYIYA 129
Query: 193 LPKNAVS-VGASGAVFGLFAISVLV 216
P + + VGASGA+ G+ A +L+
Sbjct: 130 TPHSILPLVGASGAISGVCAAFLLL 154
>gi|423578636|ref|ZP_17554747.1| hypothetical protein IIA_00151 [Bacillus cereus VD014]
gi|423638230|ref|ZP_17613882.1| hypothetical protein IK7_04638 [Bacillus cereus VD156]
gi|401220494|gb|EJR27127.1| hypothetical protein IIA_00151 [Bacillus cereus VD014]
gi|401271733|gb|EJR77738.1| hypothetical protein IK7_04638 [Bacillus cereus VD156]
Length = 190
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 45/77 (58%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T+ H + H SN+ FL+ G +E++ G+F ++ + +G + N S++I+P
Sbjct: 47 WWRVITSLLVHVDLQHFLSNIIFLFALGSSIEKQLGHFSFFILFFLSGISGNISSYIIMP 106
Query: 195 KNAVSVGASGAVFGLFA 211
+ GASG +FGL
Sbjct: 107 LEYIHAGASGGIFGLLG 123
>gi|196248915|ref|ZP_03147615.1| Rhomboid family protein [Geobacillus sp. G11MC16]
gi|196211791|gb|EDY06550.1| Rhomboid family protein [Geobacillus sp. G11MC16]
Length = 390
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++F+T F H + HL +N F LY G VE G+ L Y G S+L P
Sbjct: 228 WWRFLTPMFLHIGFLHLLTNTFALYYLGITVERLYGSLRFLLIYATAGFFGTLASFLFTP 287
Query: 195 KNAVSVGASGAVFGLFA 211
++S GASGA+FGLF
Sbjct: 288 --SISAGASGAIFGLFG 302
>gi|71276309|ref|ZP_00652587.1| Rhomboid-like protein [Xylella fastidiosa Dixon]
gi|170730512|ref|YP_001775945.1| hypothetical protein Xfasm12_1387 [Xylella fastidiosa M12]
gi|71162917|gb|EAO12641.1| Rhomboid-like protein [Xylella fastidiosa Dixon]
gi|71729933|gb|EAO32028.1| Rhomboid-like protein [Xylella fastidiosa Ann-1]
gi|167965305|gb|ACA12315.1| conserved hypothetical protein [Xylella fastidiosa M12]
Length = 202
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 71/155 (45%), Gaps = 34/155 (21%)
Query: 137 QFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNF-GLWLSYIFTGAAANFVSWLILP- 194
+ +T F HA+ +HL N+ LY FG ++E G G L+Y A VS ILP
Sbjct: 42 RLITYGFVHADISHLLFNMVTLYFFGSMIEAVMGELTGSLLTYPLFYLGALLVS--ILPS 99
Query: 195 --KNA-----VSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASA 247
KN +S+GASGAV + +VL++ W I+ + I A A
Sbjct: 100 YIKNQKNPKYLSLGASGAVSAVLFAAVLLQ---PWALIVVLFI-------------PAPA 143
Query: 248 GMSGTFIGGYSV-------QSINHIAHLSGALFGV 275
F GYS+ INH AHLSGA FGV
Sbjct: 144 IFYAVFYVGYSIWMGRRGDDGINHSAHLSGAAFGV 178
>gi|251778447|ref|ZP_04821367.1| rhomboid family protein [Clostridium botulinum E1 str. 'BoNT E
Beluga']
gi|243082762|gb|EES48652.1| rhomboid family protein [Clostridium botulinum E1 str. 'BoNT E
Beluga']
Length = 321
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 74/154 (48%), Gaps = 27/154 (17%)
Query: 133 PAWYQ-----FVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGL--WLSYIFTGAAA 185
P YQ VT AF H HL N++ LYI G VE+ FG+ +L F A
Sbjct: 177 PLIYQGEVWRLVTCAFLHGGITHLLFNMYALYILGPQVEKI---FGIKKYLIIYFVSAIT 233
Query: 186 NFVSWLILPKNAVSVGASGAVFGLF-AISVL-VKMSWDWRKILEVLILGQFVVEKVMEAA 243
+ + L KN +SVGASGA+FGL AI V +K K + ++G ++ ++
Sbjct: 234 SSSLGVALNKNTISVGASGAIFGLLGAILVFSIKQRHKVEKEYILNLIGVIILNLLI--- 290
Query: 244 QASAGMSGTFIGGYSVQSINHIAHLSGALFGVFL 277
G+++ +I+++ H+ G L GV +
Sbjct: 291 ------------GFNISNIDNLGHIGGFLGGVIM 312
>gi|434400323|ref|YP_007134327.1| Rhomboid family protein [Stanieria cyanosphaera PCC 7437]
gi|428271420|gb|AFZ37361.1| Rhomboid family protein [Stanieria cyanosphaera PCC 7437]
Length = 230
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 56/112 (50%), Gaps = 6/112 (5%)
Query: 133 PAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLI 192
P + +T+ F H H+ N+ FL+IFG +E+ G+F L Y+ G A W
Sbjct: 66 PEYLTLITSQFLHGGLAHIGFNMLFLWIFGNNIEDSLGHFKFLLFYLGCGILAGLTHWF- 124
Query: 193 LPKNAV--SVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEA 242
N++ +VGASGA+ G+ +L + +IL +L LG F+ + A
Sbjct: 125 FDMNSITPTVGASGAIAGVMGAYIL---KYPKAQILTLLPLGFFITTVRIPA 173
>gi|317127070|ref|YP_004093352.1| rhomboid family protein [Bacillus cellulosilyticus DSM 2522]
gi|315472018|gb|ADU28621.1| Rhomboid family protein [Bacillus cellulosilyticus DSM 2522]
Length = 249
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 45/77 (58%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
++ VT F H + HL N F L++FG +E+ G L ++Y TG AN ++++ P
Sbjct: 60 WRIVTPIFLHGSIMHLLFNCFSLFLFGPALEKMLGKGKLLIAYFATGILANIATFILAPL 119
Query: 196 NAVSVGASGAVFGLFAI 212
+GASGA++GLF I
Sbjct: 120 FYFHLGASGAIYGLFGI 136
>gi|344997584|ref|YP_004799927.1| rhomboid family protein [Caldicellulosiruptor lactoaceticus 6A]
gi|343965803|gb|AEM74950.1| Rhomboid family protein [Caldicellulosiruptor lactoaceticus 6A]
Length = 242
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 75/150 (50%), Gaps = 14/150 (9%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
+ +T+ F H +W HL SN++ L++FG VE+ G+F + YI +G AA W
Sbjct: 70 WSIITSMFLHGSWMHLISNMWSLWLFGDNVEDRVGHFRFLIFYILSGFAAALTHWFFNAN 129
Query: 196 NAV-SVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEA---------AQA 245
+ + +VGASGA+ G+ L+ + +I+ ++ LG + + A +Q
Sbjct: 130 SPIPTVGASGAISGVMGAYFLM---FPLSRIVTLIPLGFIPLFIEIPAIFFLGIWFLSQV 186
Query: 246 SAGMSGTFIGGYSVQSINHIAHLSGALFGV 275
S+G+ F G I AH+ G +FGV
Sbjct: 187 SSGILELF-GPVFGSGIAWWAHIGGFVFGV 215
>gi|290958988|ref|YP_003490170.1| hypothetical protein SCAB_45641 [Streptomyces scabiei 87.22]
gi|260648514|emb|CBG71625.1| putative integral membrane protein [Streptomyces scabiei 87.22]
Length = 297
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ VT+ F H + H+ N+ L+ G +E G Y +G A + +++L+
Sbjct: 133 WYRLVTSMFLHGSVTHILFNMLSLWWIGGPLEAALGRARYLTLYFASGLAGSALTYLLAA 192
Query: 195 KNAVSVGASGAVFGLF-AISVLV-KMSWDWR 223
N S+GASGA+FGLF A VL+ ++ +D R
Sbjct: 193 PNQPSLGASGAIFGLFGATGVLMRRLRYDMR 223
>gi|339480868|ref|ZP_08656527.1| membrane-associated serine protease [Leuconostoc
pseudomesenteroides KCTC 3652]
Length = 230
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 68/130 (52%), Gaps = 11/130 (8%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+++ +T F HA + H+ +N+ L+ G + E+ G+ Y F+G + N S+L P
Sbjct: 62 YWRLITPIFLHAGFMHIVTNMLTLWFIGPIAEDAFGSRKFLGLYFFSGISGNIFSYLFSP 121
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQ----FVVEKVMEAAQASA--- 247
N +SVGAS A+FGLF L+ ++ +R V LG F++ ++ + A+
Sbjct: 122 -NTISVGASTALFGLFG--GLMIFAYQFRHDPNVRALGSMMGLFILLTLLSSFSATNIDL 178
Query: 248 -GMSGTFIGG 256
G G FIGG
Sbjct: 179 WGHFGGFIGG 188
>gi|449132595|ref|ZP_21768610.1| Peptidase S54, rhomboid [Rhodopirellula europaea 6C]
gi|448888274|gb|EMB18596.1| Peptidase S54, rhomboid [Rhodopirellula europaea 6C]
Length = 487
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 72/151 (47%), Gaps = 19/151 (12%)
Query: 137 QFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVS---WLIL 193
Q+VT+AF HA HL N+FFL+ FG +VE + G + L Y+ V L+L
Sbjct: 97 QWVTSAFLHAGPFHLMGNMFFLWAFGLIVEGKVGAWKFLLIYLGIAVGECVVEQLMMLVL 156
Query: 194 PKNAVSVGASGAVFGLFAISVLVKMSWDWRKILE-VLILGQFVVEKVM--EAAQASAGM- 249
S+GAS AVFGL I+++ W +E VL+ G F+ + + E + M
Sbjct: 157 VGEGYSLGASSAVFGLMMIALI----WAPENDVECVLVFGLFLFIRALAFEVKVVTLAML 212
Query: 250 ------SGTFIGGYSVQSINHIAHLSGALFG 274
F G+SV S + H+ GA G
Sbjct: 213 FLFLQVVEMFFAGFSVSS--GLLHMLGAFVG 241
>gi|443310405|ref|ZP_21040059.1| putative membrane protein [Synechocystis sp. PCC 7509]
gi|442779561|gb|ELR89800.1| putative membrane protein [Synechocystis sp. PCC 7509]
Length = 228
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
Query: 131 NFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSW 190
+ P W T+ F H + H++ N+ FL+IFG +E+ G+ + Y+ GA A W
Sbjct: 62 SLPEWMTLFTSQFLHGGFLHIAGNMLFLWIFGNNIEDRLGHVKYLIFYLGCGALAALAQW 121
Query: 191 LILPKNAV-SVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVE 237
+ + S+GASGA+ G+ VL + K+L ++ LG F+
Sbjct: 122 FFSQSSGIPSLGASGAIAGIMGAYVL---RFPHAKVLTLVPLGFFLTT 166
>gi|126651489|ref|ZP_01723693.1| hypothetical protein BB14905_07394 [Bacillus sp. B14905]
gi|126591742|gb|EAZ85838.1| hypothetical protein BB14905_07394 [Bacillus sp. B14905]
Length = 207
Score = 53.9 bits (128), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 44/77 (57%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +A F HA + H+ N+F LY+FG +E+ G Y+ +G N +++
Sbjct: 57 WWRVFSAIFLHAGFMHVFFNMFSLYLFGPELEKIAGKARFITIYLVSGIVGNMATYIFYD 116
Query: 195 KNAVSVGASGAVFGLFA 211
+ S+GASGA+FG+F
Sbjct: 117 SSYASLGASGAIFGIFG 133
>gi|336430826|ref|ZP_08610764.1| hypothetical protein HMPREF0994_06770 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
gi|336016582|gb|EGN46362.1| hypothetical protein HMPREF0994_06770 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
Length = 209
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 67/137 (48%), Gaps = 13/137 (9%)
Query: 87 KPEERRKPKKSVNGVFW---------IILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQ 137
KP+ R +++ + W +I+ + + D ++ + YL + +Y+
Sbjct: 3 KPQTYRYQNQNMKEIPWCSAVLTAANVIIFLVCQFTGDWLYIKGEFGAFYLIRS-QEYYR 61
Query: 138 FVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNA 197
VTA F HA+ +HL +N+ LY G++VE+ G+ + + +G N ++ +
Sbjct: 62 LVTAMFLHADISHLVNNMILLYFGGEIVEKTIGSVRYLVLFFVSGICGNLLTAIFEVSTG 121
Query: 198 V---SVGASGAVFGLFA 211
+ S+GASGAVFGL
Sbjct: 122 MYFNSIGASGAVFGLIG 138
>gi|323486504|ref|ZP_08091827.1| rhomboid protease GluP [Clostridium symbiosum WAL-14163]
gi|355629057|ref|ZP_09050194.1| hypothetical protein HMPREF1020_04273 [Clostridium sp. 7_3_54FAA]
gi|323400207|gb|EGA92582.1| rhomboid protease GluP [Clostridium symbiosum WAL-14163]
gi|354819380|gb|EHF03825.1| hypothetical protein HMPREF1020_04273 [Clostridium sp. 7_3_54FAA]
Length = 209
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 68/149 (45%), Gaps = 16/149 (10%)
Query: 132 FPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWL 191
+ +Y+ +T+ F H HL +N+ L++ G +E G + Y+ G AN +S
Sbjct: 51 YGEYYRLLTSVFMHFGIGHLINNMLVLFVLGDNLERALGKVKYLIFYLLCGIGANIISLA 110
Query: 192 ILPKNA---VSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAG 248
+ VS GASGA+FG+ + LV R LE L Q ++ +
Sbjct: 111 VNMGRGYYVVSAGASGAIFGV--VGGLVYAVAVNRGRLEDLSTQQLMILVAV-------- 160
Query: 249 MSGTFIGGYSVQSINHIAHLSGALFGVFL 277
T G++ +++ AH+ G L G+FL
Sbjct: 161 ---TLYHGFTSTGVDNAAHVGGLLIGIFL 186
>gi|223478122|ref|YP_002582479.1| hypothetical protein [Thermococcus sp. AM4]
gi|214033348|gb|EEB74175.1| hypothetical protein TAM4_1542 [Thermococcus sp. AM4]
Length = 207
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 71/147 (48%), Gaps = 18/147 (12%)
Query: 131 NFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSW 190
+ W++ TA F H +W HL+ N FFL G +E G + + YI G N +S
Sbjct: 57 QYHEWWRLFTAMFVHLSWIHLAMNTFFLIYLGSQLELFVGRWRYLVLYITAGLFGNVLSV 116
Query: 191 LILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMS 250
++ +S GASGA+FG I LI+ + +++K +++A A+A
Sbjct: 117 ALMDPYTISGGASGALFG----------------IAGALIMIEGILKKNIQSALANAFF- 159
Query: 251 GTFIGGYSVQSINHIAHLSGALFGVFL 277
F+ + +N IAHL G + G+ L
Sbjct: 160 -LFLINSWMPHVNAIAHLGGLIVGIAL 185
>gi|260892935|ref|YP_003239032.1| rhomboid family protein [Ammonifex degensii KC4]
gi|260865076|gb|ACX52182.1| Rhomboid family protein [Ammonifex degensii KC4]
Length = 220
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 131 NFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSW 190
+F + F+T+ F H W H+ N+ +L++FG VE+ G F + Y+FTG + +
Sbjct: 63 SFTTYLPFLTSMFLHGGWVHVLGNMLYLWVFGDNVEDIMGRFRFLVFYLFTGFIGSLLHI 122
Query: 191 LILPKNAV-SVGASGAVFGL 209
+ P + + +VGASGA+ G+
Sbjct: 123 WMDPDSHIPTVGASGAIAGV 142
>gi|407785434|ref|ZP_11132582.1| hypothetical protein B30_05302 [Celeribacter baekdonensis B30]
gi|407203466|gb|EKE73453.1| hypothetical protein B30_05302 [Celeribacter baekdonensis B30]
Length = 259
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 134 AWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLIL 193
+Y +T+ F H + H++ N+ FL+IFG +E+E G+ Y+F G AA ++
Sbjct: 72 GYYTMLTSMFMHGSVLHIAGNMLFLWIFGDNLEDEMGHLRYLGFYLFCGLAAGLAQYMAA 131
Query: 194 PKNAVS-VGASGAVFGLFAISVLV 216
P V VGASGA+ G+ +L+
Sbjct: 132 PDARVPMVGASGAIAGVLGGYMLL 155
>gi|397689480|ref|YP_006526734.1| rhomboid family protein [Melioribacter roseus P3M]
gi|395810972|gb|AFN73721.1| rhomboid family protein [Melioribacter roseus P3M]
Length = 231
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 140 TAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAV- 198
T+ F H W H+ SN+ LYIFG VE+ G+F + Y+ TG AA + + L +++V
Sbjct: 66 TSMFLHGGWAHIFSNMLALYIFGDNVEDRLGSFRYLIFYLLTGTAAALLH-IYLNQDSVI 124
Query: 199 -SVGASGAVFGLFA 211
+VGASGA+ G+ A
Sbjct: 125 PTVGASGAISGVMA 138
>gi|163747191|ref|ZP_02154546.1| hypothetical protein OIHEL45_00522 [Oceanibulbus indolifex HEL-45]
gi|161379466|gb|EDQ03880.1| hypothetical protein OIHEL45_00522 [Oceanibulbus indolifex HEL-45]
Length = 235
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 134 AWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLIL 193
++ +T+ F H W HL+ N+ FL+IFG VE+E G+ L Y+ G AA +
Sbjct: 60 GYFGLITSQFLHGGWMHLAGNMLFLWIFGDNVEDEMGHGRYLLFYLACGIAAGLGQVVTE 119
Query: 194 PKNAVS-VGASGAVFGLFAISVLV 216
P + V VGASGA+ G+ +L+
Sbjct: 120 PLSWVPMVGASGAIAGVMGGYLLL 143
>gi|398784354|ref|ZP_10547618.1| hypothetical protein SU9_14461 [Streptomyces auratus AGR0001]
gi|396995277|gb|EJJ06295.1| hypothetical protein SU9_14461 [Streptomyces auratus AGR0001]
Length = 303
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ +TA F H H++ N+ L+ G +E G Y+ G + +S+ +
Sbjct: 139 WYRLLTAMFLHQQVAHIAFNMLSLWWLGPPLEAALGRARFIALYLLAGLGGSALSYFLAA 198
Query: 195 KNAVSVGASGAVFGLFAIS--VLVKMSWDWRKILEVLIL 231
+N S+GASGA+FGL + +L ++ +D + +L +L L
Sbjct: 199 QNQPSLGASGAIFGLLGATAVLLRRLRYDMKPVLILLGL 237
>gi|443322189|ref|ZP_21051220.1| putative membrane protein [Gloeocapsa sp. PCC 73106]
gi|442788075|gb|ELR97777.1| putative membrane protein [Gloeocapsa sp. PCC 73106]
Length = 232
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 72/169 (42%), Gaps = 16/169 (9%)
Query: 122 SIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFT 181
S + + + P +T F H + H+ N+ +L+IFG +EEE G+ + Y+
Sbjct: 56 SFDGIEVGNAIPEPLTLITCQFLHGGFLHIGFNMLYLWIFGNNIEEELGSVKFLIFYLAC 115
Query: 182 GAAANFVSWLI-LPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEK-- 238
GA A W P S+GASGA+ G+ +L + +IL +L LG ++
Sbjct: 116 GALAALTQWFFSAPSTIPSLGASGAIAGIMGAYIL---KFPNAQILTLLPLGFLILPLRI 172
Query: 239 ----------VMEAAQASAGMSGTFIGGYSVQSINHIAHLSGALFGVFL 277
V +A A + G + + AH G +FG+ L
Sbjct: 173 PAFAFLGFWFVQQAFNGVASLDPNVGVGMQQGGVAYWAHAGGFIFGIIL 221
>gi|402298353|ref|ZP_10818053.1| rhomboid protein membrane-associated serine peptidase [Bacillus
alcalophilus ATCC 27647]
gi|401726454|gb|EJS99682.1| rhomboid protein membrane-associated serine peptidase [Bacillus
alcalophilus ATCC 27647]
Length = 519
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 64/139 (46%), Gaps = 19/139 (13%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVS-WLIL 193
W++ +T+ F H + HL N LY G LVE G+F Y G VS W+ L
Sbjct: 234 WWRIITSMFIHIGFLHLLMNSLALYFLGTLVERIYGSFRFVFIYFTAGVIGTLVSFWMNL 293
Query: 194 PKNAVSVGASGAVFGLFAISVLVKMSWDWRK------------ILEVLILGQFVVEKVME 241
++ GASGA+FGLF L+ ++RK +L + + F++ V
Sbjct: 294 ---SIGAGASGAIFGLFG--ALLYFGLNYRKLFFRTMGANVLIVLAINLAFGFLIPVVDN 348
Query: 242 AAQASAGMSGTFIGGYSVQ 260
+A G+ G F+ Y +Q
Sbjct: 349 SAHV-GGLIGGFLAAYVIQ 366
>gi|225386984|ref|ZP_03756748.1| hypothetical protein CLOSTASPAR_00734 [Clostridium asparagiforme
DSM 15981]
gi|225046996|gb|EEG57242.1| hypothetical protein CLOSTASPAR_00734 [Clostridium asparagiforme
DSM 15981]
Length = 193
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 69/146 (47%), Gaps = 16/146 (10%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSW---L 191
+Y+ VT+ F H +HL +N+ L++ G +E G+ + Y+ G AN VS L
Sbjct: 45 YYRLVTSVFMHFGVSHLLNNMLVLFVLGDNLERALGHVKYLIFYLLCGVGANLVSMTVNL 104
Query: 192 ILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSG 251
+ +V GASGA+FG+ + LV R LE L Q V ++
Sbjct: 105 MTGSLSVGAGASGAIFGV--VGGLVYAVGVNRGRLEDLTSRQLGVMILL----------- 151
Query: 252 TFIGGYSVQSINHIAHLSGALFGVFL 277
T G++ +I++ AH+ G G+ L
Sbjct: 152 TLYHGFTSMNIDNAAHIGGLAAGILL 177
>gi|411116458|ref|ZP_11388945.1| putative membrane protein [Oscillatoriales cyanobacterium JSC-12]
gi|410712561|gb|EKQ70062.1| putative membrane protein [Oscillatoriales cyanobacterium JSC-12]
Length = 518
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGA----AANFVSW 190
W++ + A F H HL +N+ LY+FG L E G ++Y FTG A FVS
Sbjct: 370 WWRAIAAIFLHHGIVHLLTNMLGLYVFGALAEAALGRKKFLITYFFTGVGSMLAVVFVST 429
Query: 191 LILPKNAVSVGASGAVFGLFAISVLVKMSWDW 222
L ++VGASGAV G+ +++ W
Sbjct: 430 LTNSTTQLTVGASGAVLGMVGAEGAIQLKGWW 461
>gi|229083526|ref|ZP_04215864.1| Rhomboid [Bacillus cereus Rock3-44]
gi|228699780|gb|EEL52427.1| Rhomboid [Bacillus cereus Rock3-44]
Length = 186
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 43/77 (55%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+++ +T+ F H ++ H SN L+ G+ +E++ G+ L + G + N S++I+P
Sbjct: 47 YWRLITSLFIHVDFQHFLSNSICLFFLGQSIEKQLGSIRFILLFFTAGISGNIASYIIMP 106
Query: 195 KNAVSVGASGAVFGLFA 211
+ GASG +FGL
Sbjct: 107 IEYIHAGASGGIFGLLG 123
>gi|354603563|ref|ZP_09021561.1| hypothetical protein HMPREF9450_00476 [Alistipes indistinctus YIT
12060]
gi|353348943|gb|EHB93210.1| hypothetical protein HMPREF9450_00476 [Alistipes indistinctus YIT
12060]
Length = 204
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 72/153 (47%), Gaps = 21/153 (13%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEG---------NFGLW-LSYIFTGAA 184
W++ +T F H ++ HL+ N+F L FG+ +E G N LW L F G
Sbjct: 39 WWRVITHGFVHGDYVHLAVNMFVLLSFGQFIERFFGAYQQIGLVSNGDLWYLLLYFGGMV 98
Query: 185 ANFVSWLILPKN---AVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVME 241
A V LI +N S+GASGAV + S+ W KI +LG + ++
Sbjct: 99 AASVYDLIRYRNNPRYASIGASGAVSAVVFASIFFN---PWSKI---YLLGVIPIPGIIF 152
Query: 242 AAQASAGMSGTFIGGYSVQSINHIAHLSGALFG 274
G S +++G + INH AHL GALFG
Sbjct: 153 GL-LYIGYS-SYMGRHQGDRINHFAHLFGALFG 183
>gi|296167263|ref|ZP_06849666.1| rhomboid family protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295897363|gb|EFG76966.1| rhomboid family protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length = 285
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+Y+ T+AF H HL N++ LY+ G +E G Y +G + + +L+ P
Sbjct: 112 YYRLATSAFLHYGATHLVFNMWALYVVGPPLESWLGRLRFGALYAMSGLGGSVLVYLVSP 171
Query: 195 KNAVSVGASGAVFGLFAISVLV 216
+ + GASGA+FGLF + +V
Sbjct: 172 LDTATAGASGAIFGLFGATFVV 193
>gi|428163351|gb|EKX32426.1| hypothetical protein GUITHDRAFT_166710 [Guillardia theta CCMP2712]
Length = 353
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Query: 123 IKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTG 182
I S+ +Y +Y+ +T F H + +H+ N F L G VE G ++Y+ G
Sbjct: 173 ITSMIVYER--QYYRLLTPIFLHGSLSHILVNCFSLNAIGPQVERYFGTERTVITYLLAG 230
Query: 183 AAANFVSWLILPKNAVSVGASGAVFGLF-AISVLVKMSWD 221
A N S+ PK SVGASGA+FGL A+ V + D
Sbjct: 231 IAGNVASFYFGPKLIPSVGASGAIFGLVGALGVFLARHQD 270
>gi|417761549|ref|ZP_12409558.1| peptidase, S54 family [Leptospira interrogans str. 2002000624]
gi|417776479|ref|ZP_12424317.1| peptidase, S54 family [Leptospira interrogans str. 2002000621]
gi|418671929|ref|ZP_13233275.1| peptidase, S54 family [Leptospira interrogans str. 2002000623]
gi|409942630|gb|EKN88238.1| peptidase, S54 family [Leptospira interrogans str. 2002000624]
gi|410573846|gb|EKQ36890.1| peptidase, S54 family [Leptospira interrogans str. 2002000621]
gi|410581051|gb|EKQ48866.1| peptidase, S54 family [Leptospira interrogans str. 2002000623]
Length = 514
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ VT F HA + HL N F L I VE G + YIF+G + S + P
Sbjct: 374 WWRLVTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLILYIFSGLCGSLASIVWYP 433
Query: 195 KNAVSVGASGAVFGLF-AISVLVKMS 219
N +SVGASGA+FGL+ AI LV M
Sbjct: 434 -NTISVGASGAIFGLYGAILGLVLMD 458
>gi|86606558|ref|YP_475321.1| S54 family peptidase [Synechococcus sp. JA-3-3Ab]
gi|86555100|gb|ABD00058.1| peptidase, S54 (rhomboid) family [Synechococcus sp. JA-3-3Ab]
Length = 248
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 73/159 (45%), Gaps = 18/159 (11%)
Query: 133 PAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLI 192
P W T+ F H + HL N+ FL++FG VE+ G+ + Y+ GA A W
Sbjct: 67 PEWVTLFTSQFLHGGFLHLGGNMLFLWVFGNNVEDRLGHVRYLIFYLTCGALAALTQWFF 126
Query: 193 LPKNAV-SVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEA--------- 242
++ + S+GASGA+ G+ +L + +IL ++ LG F+ + A
Sbjct: 127 DMESTIPSLGASGAIAGVLGAYIL---RFPRAEILTLVPLGIFITTVYVPAWVFLGFWFV 183
Query: 243 AQASAGMSG----TFIGGYSVQSINHIAHLSGALFGVFL 277
QA G++ T I G I + AH G +FG L
Sbjct: 184 QQAFYGIASLQTPTNI-GMQGGGIAYWAHAGGFVFGAIL 221
>gi|241895032|ref|ZP_04782328.1| S54 family peptidase [Weissella paramesenteroides ATCC 33313]
gi|241871750|gb|EER75501.1| S54 family peptidase [Weissella paramesenteroides ATCC 33313]
Length = 225
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 45/84 (53%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +TA F H + HL N+ LY G+L+E+ G+ ++ YI + S
Sbjct: 59 WWRLITAGFLHVTFMHLILNMITLYYVGRLLEQYLGSLKYFIGYITAIIIGSLNSLAFGS 118
Query: 195 KNAVSVGASGAVFGLFAISVLVKM 218
A+S GASG +FGLF + L+ +
Sbjct: 119 ITAISAGASGGIFGLFGMIFLLGL 142
>gi|297200957|ref|ZP_06918354.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
gi|197712264|gb|EDY56298.1| conserved hypothetical protein [Streptomyces sviceus ATCC 29083]
Length = 294
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 57/99 (57%), Gaps = 2/99 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+Y+ VT+ F H H+ N+ L+ G +E G Y +G A +++L+
Sbjct: 131 YYRLVTSMFAHQEIWHIGFNMMSLWWLGGPLEAALGRARYLTVYFVSGLAGGALAYLLAS 190
Query: 195 KNAVSVGASGAVFGLF-AISVLV-KMSWDWRKILEVLIL 231
+ ++GASGA+FGLF A +VL+ ++++D R I+ +L++
Sbjct: 191 PSTATLGASGAIFGLFGATAVLMRRLNYDLRPIIALLVI 229
>gi|452847402|gb|EME49334.1| hypothetical protein DOTSEDRAFT_119409 [Dothistroma septosporum
NZE10]
Length = 303
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 68/162 (41%), Gaps = 20/162 (12%)
Query: 124 KSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGA 183
K L L FP + A H + HL+ NL L++FG L+ E+ G YI GA
Sbjct: 119 KYLTLVPAFPNAISVIGATLRHDTFKHLAGNLISLWLFGLLLHEDVGRGTFLAIYIAAGA 178
Query: 184 AANFVS---------WLILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQF 234
F S W+ A G SG+V G+ A + ++ + R + + +
Sbjct: 179 TGGFASLALNVYREQWM-----AYIFGCSGSVLGVTAAACTLRPNGTIRAFGYDIPISAW 233
Query: 235 VVEKVMEAAQASAGMSGTFIGGYSVQSINHIAHLSGALFGVF 276
+ AA+A A + G +I+H HL G +FGV
Sbjct: 234 GFLALYSAAEAYAAIRGL------ATTIDHAGHLGGVVFGVL 269
>gi|28199124|ref|NP_779438.1| hypothetical protein PD1237 [Xylella fastidiosa Temecula1]
gi|28057222|gb|AAO29087.1| conserved hypothetical protein [Xylella fastidiosa Temecula1]
Length = 206
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 71/155 (45%), Gaps = 34/155 (21%)
Query: 137 QFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNF-GLWLSYIFTGAAANFVSWLILP- 194
+ +T F HA+ +HL N+ LY FG ++E G G L+Y A VS ILP
Sbjct: 46 RLITYGFVHADISHLLFNMVTLYFFGSMIEAVMGELTGSLLTYPLFYLGALLVS--ILPS 103
Query: 195 --KNA-----VSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASA 247
KN +S+GASGAV + +VL++ W I+ + I A A
Sbjct: 104 YIKNQKNPKYLSLGASGAVSAVLFAAVLLQ---PWALIVVLFI-------------PAPA 147
Query: 248 GMSGTFIGGYSV-------QSINHIAHLSGALFGV 275
F GYS+ INH AHLSGA FGV
Sbjct: 148 IFYAVFYVGYSIWMGRRGDDGINHSAHLSGAAFGV 182
>gi|334366418|ref|ZP_08515350.1| peptidase, S54 family [Alistipes sp. HGB5]
gi|390945646|ref|YP_006409406.1| hypothetical protein Alfi_0319 [Alistipes finegoldii DSM 17242]
gi|313157384|gb|EFR56807.1| peptidase, S54 family [Alistipes sp. HGB5]
gi|390422215|gb|AFL76721.1| putative membrane protein [Alistipes finegoldii DSM 17242]
Length = 202
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 69/147 (46%), Gaps = 13/147 (8%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
YQF+T F HAN+ H+ N+F L++FG+ +E E G Y+ G A + +L
Sbjct: 52 YQFITYMFLHANFEHIFFNMFALWMFGRTLEYELGQKRFLTYYMVCGIGAALIQYLTALA 111
Query: 196 NA----VSVGASGAVFG-LFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMS 250
V VGASGAV G L A VL + I + + ++ V G+
Sbjct: 112 FGEFPLVLVGASGAVMGLLLAFGVLHPNAVIMLLIPPIPMKAKWFV--------VIYGVI 163
Query: 251 GTFIGGYSVQSINHIAHLSGALFGVFL 277
F+G V ++ H AH+ G L+G L
Sbjct: 164 ELFLGWRGVGNVAHFAHVGGMLWGFLL 190
>gi|160901697|ref|YP_001567278.1| rhomboid family protein [Petrotoga mobilis SJ95]
gi|160359341|gb|ABX30955.1| Rhomboid family protein [Petrotoga mobilis SJ95]
Length = 226
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T+ F H H+ N+ L+ G +VE G Y+ +G N ++ L LP
Sbjct: 51 WFRLITSMFVHGGLFHIFFNMIALFYVGNIVERAYGKERFISIYMLSGIFGNLLTHLFLP 110
Query: 195 KNAVSVGASGAVFGLFAI 212
NA+SVGASGA+FGL +
Sbjct: 111 -NAISVGASGAIFGLIGL 127
>gi|83594894|ref|YP_428646.1| rhomboid-like protein [Rhodospirillum rubrum ATCC 11170]
gi|386351659|ref|YP_006049907.1| rhomboid-like protein [Rhodospirillum rubrum F11]
gi|83577808|gb|ABC24359.1| Rhomboid-like protein [Rhodospirillum rubrum ATCC 11170]
gi|346720095|gb|AEO50110.1| rhomboid-like protein [Rhodospirillum rubrum F11]
Length = 252
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 131 NFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSW 190
+ PAW +T+ H W HL N+ FL++FG VE+ G+ Y G A
Sbjct: 64 DLPAWITLLTSMTLHGGWQHLLGNMLFLWVFGNNVEDALGHLRFLAFYAVCGLIAALTHA 123
Query: 191 LILPKNAVS-VGASGAVFGLFAISVLV 216
LI + V VGASGA+ G+ +L+
Sbjct: 124 LIDSSSTVPMVGASGAISGVMGAYILL 150
>gi|365860674|ref|ZP_09400469.1| hypothetical protein SPW_0771 [Streptomyces sp. W007]
gi|364009831|gb|EHM30776.1| hypothetical protein SPW_0771 [Streptomyces sp. W007]
Length = 220
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 53/91 (58%), Gaps = 2/91 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ VT+ F H H++ N+ L+ G +E G Y+ +G A + +++L+
Sbjct: 56 WYRLVTSMFLHQEVVHIAFNMLGLWWLGGQLEAALGRSRYLALYLLSGLAGSALTYLLAE 115
Query: 195 KNAVSVGASGAVFGLF-AISVLV-KMSWDWR 223
S+GASGAV+GLF A +VL+ +M++D R
Sbjct: 116 PGQGSLGASGAVYGLFGATAVLMRRMNYDMR 146
>gi|359442292|ref|ZP_09232162.1| hypothetical protein P20429_2538 [Pseudoalteromonas sp. BSi20429]
gi|358035903|dbj|GAA68411.1| hypothetical protein P20429_2538 [Pseudoalteromonas sp. BSi20429]
Length = 361
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
+ +T F H + HL N++FLYI G +E+ G+ L Y+ G A+F S+++ P
Sbjct: 197 WTVLTCVFLHGSIMHLVGNMYFLYIVGDNLEDVLGHKRFLLWYLACGLLASFASYIVSPM 256
Query: 196 NAV-SVGASGAVFGLFAISVL 215
+ + VGASGA+ GLF + ++
Sbjct: 257 STIPGVGASGAIAGLFGMYLM 277
>gi|152993649|ref|YP_001359370.1| hypothetical protein SUN_2072 [Sulfurovum sp. NBC37-1]
gi|151425510|dbj|BAF73013.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
Length = 192
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 63/135 (46%), Gaps = 13/135 (9%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ TA F H H+ N+ LYI G+ +E Y+F+G VS I P
Sbjct: 23 WWRLFTAMFLHGGMTHILMNMVSLYIIGRGMEMYFDTKSYLSIYLFSGLLGGLVSLYIHP 82
Query: 195 KNAVSVGASGAVFGLFAISV---------LVKMSWDWRKILEVLILGQFVVEKVMEAAQA 245
+ V +GASGA+FG+F L K + + K V+I+ V+ +
Sbjct: 83 AS-VGIGASGAIFGVFGALAGFFIAHRKHLGKHTKAFMKEFTVIIVINLVIGFSIPNVDV 141
Query: 246 SAGMSGT---FIGGY 257
SA ++GT FIGGY
Sbjct: 142 SAHVAGTVVGFIGGY 156
>gi|386002483|ref|YP_005920782.1| rhomboid family protein [Methanosaeta harundinacea 6Ac]
gi|357210539|gb|AET65159.1| Rhomboid family protein [Methanosaeta harundinacea 6Ac]
Length = 236
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 68/138 (49%), Gaps = 12/138 (8%)
Query: 139 VTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAV 198
+T F HA+ HL N+ FL+ FG +E G +I +G A +LP ++
Sbjct: 95 ITHIFVHADMAHLLFNMIFLFFFGTELERRVGESRFLQIFIISGLVAAIGQMAVLPAGSM 154
Query: 199 SVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQAS-AGMSGTFIGGY 257
VGASGA+FG+ ++ E+ +L FV+ + AA A + F+G
Sbjct: 155 -VGASGALFGVMGCLAVIAP--------EITVLLFFVIPLSIRAAVVLFAIIDFAFMG-- 203
Query: 258 SVQSINHIAHLSGALFGV 275
S +I H+AH++G L G+
Sbjct: 204 SADNIAHMAHIAGLLVGL 221
>gi|354604586|ref|ZP_09022575.1| hypothetical protein HMPREF9450_01490 [Alistipes indistinctus YIT
12060]
gi|353347165|gb|EHB91441.1| hypothetical protein HMPREF9450_01490 [Alistipes indistinctus YIT
12060]
Length = 230
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 75/170 (44%), Gaps = 35/170 (20%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANF----VSWL 191
YQ +T F H HL N+F L++FG+ +E + G+ + Y+ TG A VSW+
Sbjct: 56 YQLITHMFLHGGIAHLFMNMFALWMFGRTLEYDMGSKRFLIYYMITGIGAGLLQMGVSWI 115
Query: 192 ILPK-----------------------NAVSVGASGAVFG-LFAISVLVKMSWDWRKILE 227
+ + N V++GASGAVFG L A ++ + I
Sbjct: 116 EISRLQAAAHEMGAMTPYMQSMIAARANVVTIGASGAVFGVLLAFGMMYPNAMIMLLIPP 175
Query: 228 VLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQSINHIAHLSGALFGVFL 277
+ I ++ V + S G++G + + H AH+ G +FG FL
Sbjct: 176 IPIKAKYFVIGY-GLLELSLGVTG------AQSGVAHFAHVGGMIFGFFL 218
>gi|443324490|ref|ZP_21053239.1| putative membrane protein [Xenococcus sp. PCC 7305]
gi|442795891|gb|ELS05229.1| putative membrane protein [Xenococcus sp. PCC 7305]
Length = 235
Score = 53.5 bits (127), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 10/126 (7%)
Query: 116 HVFQV------RSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEE 169
H+F++ S + P + +++ F HA H+ N+ FLYIFG +EE+
Sbjct: 44 HIFEIVPKELTASFHGISTNQGIPEIFTLISSQFLHAGLAHIGFNMLFLYIFGNNIEEQL 103
Query: 170 GNFGLWLSYIFTGAAANFVSWLILPKNAV-SVGASGAVFGLFAISVLVKMSWDWRKILEV 228
G Y+ G A W + V S+GASGA+ G+ +L + KI+ V
Sbjct: 104 GRVKYLCFYLLCGVLAGLAQWYFSTMSEVPSLGASGAIAGVMGAYIL---KFPQAKIVTV 160
Query: 229 LILGQF 234
+ LG F
Sbjct: 161 VPLGFF 166
>gi|91776194|ref|YP_545950.1| rhomboid-like protein [Methylobacillus flagellatus KT]
gi|91710181|gb|ABE50109.1| Rhomboid-like protein [Methylobacillus flagellatus KT]
Length = 356
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 68/142 (47%), Gaps = 9/142 (6%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ TA F H HL+ N+ + G+LVE G++ + Y+ +G N +S +
Sbjct: 72 WWRLFTALFLHFGAVHLALNMIAFWDGGQLVERMYGHWRYLVIYLVSGLVGNLLSLVWQG 131
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFI 254
AVS GASGA+FG++ L+ W R +L+ E A + T
Sbjct: 132 NQAVSGGASGAIFGIYG--ALIVFLWQERALLD-------RREFRWLFGGACVFATATIA 182
Query: 255 GGYSVQSINHIAHLSGALFGVF 276
G+ + +I++ AH+ G + G+
Sbjct: 183 LGFMIPAIDNAAHIGGFVAGML 204
>gi|417766158|ref|ZP_12414112.1| peptidase, S54 family [Leptospira interrogans serovar Bulgarica
str. Mallika]
gi|400351612|gb|EJP03831.1| peptidase, S54 family [Leptospira interrogans serovar Bulgarica
str. Mallika]
Length = 514
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ VT F HA + HL N F L I VE G + YIF+G + S + P
Sbjct: 374 WWRLVTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLILYIFSGLCGSLASIVWYP 433
Query: 195 KNAVSVGASGAVFGLF-AISVLVKMS 219
N +SVGASGA+FGL+ AI LV M
Sbjct: 434 -NTISVGASGAIFGLYGAILGLVLMD 458
>gi|182681852|ref|YP_001830012.1| rhomboid family protein [Xylella fastidiosa M23]
gi|386083155|ref|YP_005999437.1| rhomboid family protein [Xylella fastidiosa subsp. fastidiosa
GB514]
gi|417558058|ref|ZP_12209051.1| membrane protein [Xylella fastidiosa EB92.1]
gi|182631962|gb|ACB92738.1| Rhomboid family protein [Xylella fastidiosa M23]
gi|307578102|gb|ADN62071.1| rhomboid family protein [Xylella fastidiosa subsp. fastidiosa
GB514]
gi|338179302|gb|EGO82255.1| membrane protein [Xylella fastidiosa EB92.1]
Length = 202
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 71/155 (45%), Gaps = 34/155 (21%)
Query: 137 QFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNF-GLWLSYIFTGAAANFVSWLILP- 194
+ +T F HA+ +HL N+ LY FG ++E G G L+Y A VS ILP
Sbjct: 42 RLITYGFVHADISHLLFNMVTLYFFGSMIEAVMGELTGSLLTYPLFYLGALLVS--ILPS 99
Query: 195 --KNA-----VSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASA 247
KN +S+GASGAV + +VL++ W I+ + I A A
Sbjct: 100 YIKNQKNPKYLSLGASGAVSAVLFAAVLLQ---PWALIVVLFI-------------PAPA 143
Query: 248 GMSGTFIGGYSV-------QSINHIAHLSGALFGV 275
F GYS+ INH AHLSGA FGV
Sbjct: 144 IFYAVFYVGYSIWMGRRGDDGINHSAHLSGAAFGV 178
>gi|418055334|ref|ZP_12693389.1| Peptidase S54, rhomboid domain protein [Hyphomicrobium
denitrificans 1NES1]
gi|353210916|gb|EHB76317.1| Peptidase S54, rhomboid domain protein [Hyphomicrobium
denitrificans 1NES1]
Length = 219
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 131 NFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSW 190
N P + TA F H W HL N+ +LYIFG VE+ G Y+ G AA F +
Sbjct: 57 NMPTLF---TAMFMHGGWMHLFGNMLYLYIFGDNVEDRLGRLPFLAFYLVCGLAATFAQY 113
Query: 191 LILPKNAV-SVGASGAVFGLFAISVLV 216
++V +VGASGA+ G+ +L+
Sbjct: 114 YFNSGSSVPNVGASGAIAGVLGAYILM 140
>gi|389576264|ref|ZP_10166292.1| putative membrane protein [Eubacterium cellulosolvens 6]
gi|389311749|gb|EIM56682.1| putative membrane protein [Eubacterium cellulosolvens 6]
Length = 215
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 62/146 (42%), Gaps = 16/146 (10%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLIL- 193
W++ T+ F H +HL SN L + G +E+ G+ L YI G A N S LI
Sbjct: 62 WWRLFTSMFVHFGMDHLVSNTISLLLIGVSLEQHCGHIRFLLIYILGGLAGNGFSLLIEG 121
Query: 194 --PKNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSG 251
P+ AVS GASGAVF + + + + W + + ++ V M G
Sbjct: 122 GSPQQAVSAGASGAVFAILGGYIALALIWKRTGVANINLVLTIVAAGYMFYRSMGTG--- 178
Query: 252 TFIGGYSVQSINHIAHLSGALFGVFL 277
+N AHL G G FL
Sbjct: 179 ----------VNVEAHLGGLAAGFFL 194
>gi|408673736|ref|YP_006873484.1| Rhomboid family protein [Emticicia oligotrophica DSM 17448]
gi|387855360|gb|AFK03457.1| Rhomboid family protein [Emticicia oligotrophica DSM 17448]
Length = 212
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 93/201 (46%), Gaps = 38/201 (18%)
Query: 104 IILLNLGLYVADHVFQVRSIKSLYLYHNFPAW-------YQFVTAAFCHANWNHLSSNLF 156
++++N+ +YV H+ ++ + ++ YHNF + Q T F H H+ SN+F
Sbjct: 11 LLIINIVVYVIQHILRI-DLAGIFGYHNFSLYEMGLFNPVQIFTYMFLHGGTGHIFSNMF 69
Query: 157 FLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLI-------LPKNAVS---------V 200
LY+FG ++E G+ Y+ +G A + ++ LP ++ V
Sbjct: 70 GLYMFGPMLEHFLGSKRFLTLYLVSGIGACVLHGVVNLYEISQLPIDSPEYTMMMSIPMV 129
Query: 201 GASGAVFGLFAISVLVKMSWDWRKI---LEVLILGQFVVEKVMEAAQASAGMSGTFIGGY 257
GASGA+FG+ + ++ + I L + I +++V + + F G Y
Sbjct: 130 GASGAIFGM--LGAFARLFPNTEMIIFPLPIPIKAKYLV--------SLYALFEIFSGIY 179
Query: 258 SVQ-SINHIAHLSGALFGVFL 277
S+ + H AH+ G +FG+ L
Sbjct: 180 SIMPGVAHFAHIGGLIFGILL 200
>gi|183980331|ref|YP_001848622.1| serine protease [Mycobacterium marinum M]
gi|183173657|gb|ACC38767.1| rhomboid family serine protease [Mycobacterium marinum M]
Length = 289
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 2/98 (2%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
Y+ VT+AF H HL N++ LYI G +E G Y + + + +LI P
Sbjct: 112 YRLVTSAFMHYGTLHLVFNMWALYIVGPPLEMWLGRLRFGGLYALSALGGSVLVYLIAPL 171
Query: 196 NAVSVGASGAVFGLFAISVLV--KMSWDWRKILEVLIL 231
N + GASGA+FGLF + +V +++ D R ++ ++ +
Sbjct: 172 NTATAGASGAIFGLFGATFVVAKRLNLDIRWVVALIAI 209
>gi|385989630|ref|YP_005907928.1| integral membrane protein [Mycobacterium tuberculosis CCDC5180]
gi|385993221|ref|YP_005911519.1| integral membrane protein [Mycobacterium tuberculosis CCDC5079]
gi|424945902|ref|ZP_18361598.1| integral membrane protein [Mycobacterium tuberculosis NCGM2209]
gi|449062098|ref|YP_007429181.1| integral membrane protein [Mycobacterium bovis BCG str. Korea
1168P]
gi|339293175|gb|AEJ45286.1| integral membrane protein [Mycobacterium tuberculosis CCDC5079]
gi|339296823|gb|AEJ48933.1| integral membrane protein [Mycobacterium tuberculosis CCDC5180]
gi|358230417|dbj|GAA43909.1| integral membrane protein [Mycobacterium tuberculosis NCGM2209]
gi|379026212|dbj|BAL63945.1| integral membrane protein [Mycobacterium tuberculosis str. Erdman =
ATCC 35801]
gi|449030606|gb|AGE66033.1| integral membrane protein [Mycobacterium bovis BCG str. Korea
1168P]
Length = 212
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 2/98 (2%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
Y+ VT+AF H HL N++ LY+ G +E G Y + + + +LI P
Sbjct: 40 YRLVTSAFLHYGAMHLLLNMWALYVVGPPLEMWLGRLRFGALYAVSALGGSVLVYLIAPL 99
Query: 196 NAVSVGASGAVFGLFAISVLV--KMSWDWRKILEVLIL 231
N + GASGAVFGLF + +V ++ D R ++ ++++
Sbjct: 100 NTATAGASGAVFGLFGATFMVARRLHLDVRWVVALIVI 137
>gi|338730738|ref|YP_004660130.1| Rhomboid family protein [Thermotoga thermarum DSM 5069]
gi|335365089|gb|AEH51034.1| Rhomboid family protein [Thermotoga thermarum DSM 5069]
Length = 230
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ +TA F H HL N + L+ FG +VE G + Y+ GA N + +
Sbjct: 53 WYRVITAMFVHGGLLHLLFNSYALFYFGTIVESIYGTEKFVIFYLLAGAVGNLATHVFYY 112
Query: 195 KNAVSVGASGAVFGLFAI 212
++ +SVGASGA+FGL I
Sbjct: 113 RS-ISVGASGAIFGLVGI 129
>gi|298706212|emb|CBJ29253.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 269
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 64/143 (44%), Gaps = 10/143 (6%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ +T H ++ HL+ N G +VE G Y G A N +S ++ P
Sbjct: 97 WYRLLTPIVLHGSFTHLAVNSMSFSSVGPVVERVMGKAKFVTVYTLAGIAGNVLSCIVNP 156
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFI 254
+ SVGASGA+FG+ +W ++ +LG+ ++ + + ++ +
Sbjct: 157 RTP-SVGASGAIFGMVG-------AWGAFCLMNETVLGRNNSQRALRNVAQTVMINVVY- 207
Query: 255 GGYSVQSINHIAHLSGALFGVFL 277
G I+++ HL G L G +
Sbjct: 208 -GMGSSQIDNMGHLGGFLGGAAM 229
>gi|308068481|ref|YP_003870086.1| hypothetical protein PPE_01711 [Paenibacillus polymyxa E681]
gi|305857760|gb|ADM69548.1| Uncharacterized membrane protein [Paenibacillus polymyxa E681]
Length = 207
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 73/150 (48%), Gaps = 26/150 (17%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVS---WLI 192
+++V+A F HA ++HL N F + +F +E G+F L Y+ TG N +S + +
Sbjct: 62 WRYVSAMFLHAGFDHLLFNSFAILVFAPPLERLLGSFRYVLLYLVTGIVGNILSIAHYNM 121
Query: 193 LPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGT 252
+ + VSVGASGA++G++ + V + R +++ AS T
Sbjct: 122 MTETTVSVGASGAIYGIYGAFLYVALFQ--RSLMD----------------DASRKTLYT 163
Query: 253 FIG-----GYSVQSINHIAHLSGALFGVFL 277
+G ++V +IN AH G L G FL
Sbjct: 164 LLGFGILFSFAVANINWTAHFGGLLSGFFL 193
>gi|300025024|ref|YP_003757635.1| rhomboid family protein [Hyphomicrobium denitrificans ATCC 51888]
gi|299526845|gb|ADJ25314.1| Rhomboid family protein [Hyphomicrobium denitrificans ATCC 51888]
Length = 219
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 139 VTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAV 198
+TA F H W HL N+ +LYIFG +E+ G+ Y+ G AA F + + +++
Sbjct: 62 LTAMFMHGGWMHLFGNMLYLYIFGDNIEDRFGHVRFLAFYLACGIAATFAQYYVNSGSSI 121
Query: 199 -SVGASGAVFGLFAISVLV 216
+VGASGA+ G+ +L+
Sbjct: 122 PNVGASGAIAGVLGAYILL 140
>gi|221632310|ref|YP_002521531.1| hypothetical protein trd_0277 [Thermomicrobium roseum DSM 5159]
gi|221156203|gb|ACM05330.1| putative integral membrane protein [Thermomicrobium roseum DSM
5159]
Length = 251
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 131 NFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSW 190
FP + T+ F H + HL N+++LYIFG VE+ G+F + Y+ G AA +
Sbjct: 68 GFPIYLTIFTSMFLHGGFAHLIGNMWYLYIFGDNVEDSMGHFRYLIFYLLGGIAAAWAQT 127
Query: 191 LILPKNAVS-VGASGAV 206
L+ P + + +GASGA+
Sbjct: 128 LLDPASRIPMIGASGAI 144
>gi|359461031|ref|ZP_09249594.1| rhomboid family protein [Acaryochloris sp. CCMEE 5410]
Length = 239
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 70/156 (44%), Gaps = 16/156 (10%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W +T+ F H + H++ N+ +L+IFG VEE+ G L Y+ GA A W P
Sbjct: 68 WGTLITSQFLHGGFLHVAGNMLYLWIFGNNVEEQLGRGRFLLFYLACGALAVLTQWFFNP 127
Query: 195 KNAV-SVGASGAVFGLFAISVLVKMSWDWRKILEVLILG----QFVVEKVM--------E 241
+ V S+GASGA+ G+ + + +IL ++ LG F + ++ +
Sbjct: 128 LSVVPSLGASGAIAGVMGAYIF---RFPQVRILTLVPLGIYLTTFRIPAILYLGFWFLQQ 184
Query: 242 AAQASAGMSGTFIGGYSVQSINHIAHLSGALFGVFL 277
A A + G I + AH G +FG L
Sbjct: 185 AFYGVASLDAPVTVGMEAGGIAYWAHAGGFVFGAIL 220
>gi|117927224|ref|YP_871775.1| rhomboid family protein [Acidothermus cellulolyticus 11B]
gi|117647687|gb|ABK51789.1| Rhomboid family protein [Acidothermus cellulolyticus 11B]
Length = 287
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 55/99 (55%), Gaps = 2/99 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+Y+ +TA F HA+ H+ N++ L + G +E G + Y G + +L P
Sbjct: 123 FYRLITAMFLHASVLHIVFNMWALLVVGAPLEALLGRLRFLVLYFLAGLGGSTAVYLFAP 182
Query: 195 KNAVSVGASGAVFGLFAISVLV--KMSWDWRKILEVLIL 231
+ + ++GASGA+FGLFA + ++++D R I V+++
Sbjct: 183 RGSATLGASGAIFGLFAALFVFGRRLNFDIRPIGLVIVI 221
>gi|381190950|ref|ZP_09898462.1| hypothetical protein RLTM_08264 [Thermus sp. RL]
gi|384431656|ref|YP_005641016.1| rhomboid family protein [Thermus thermophilus SG0.5JP17-16]
gi|333967124|gb|AEG33889.1| Rhomboid family protein [Thermus thermophilus SG0.5JP17-16]
gi|380451039|gb|EIA38651.1| hypothetical protein RLTM_08264 [Thermus sp. RL]
Length = 210
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 93/230 (40%), Gaps = 47/230 (20%)
Query: 55 KLRPLRHPSLTLRSRLVCNMSGSDMISQLELDKPEERRKPKKSVNGVFWIILLNLGLYVA 114
+ P R P+L +RS + N++ LL L L +
Sbjct: 6 DINPTRRPALVVRSLVALNVAA----------------------------FLLELLLGPS 37
Query: 115 DHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGL 174
V ++ + +L+ Y+ +T+ F H HL SN++FL++FG VE+ G
Sbjct: 38 QVVAKMGFVPALFFQDPLGEGYRILTSMFLHGGLFHLLSNMWFLWVFGDNVEDRMGGERF 97
Query: 175 WLSYIFTGAAANFVSWLILPKNAVS-VGASGAV-------FGLFAISVLVKMSWDWRKIL 226
L Y+ G AA L +P + V +GASGAV + LF + ++ + W
Sbjct: 98 LLFYLLGGVAAALAQALFMPASTVPMIGASGAVSAVLGAYYVLFPRAYVITLVWFVLPFT 157
Query: 227 EVLILGQFV-VEKVMEAAQASAGMSGTFIGGYSVQSINHIAHLSGALFGV 275
L G ++ ++ Q G+ G I AHL G +FGV
Sbjct: 158 LALPAGFYLGYWAFLQLVQGLLGVPG----------IAFWAHLGGFVFGV 197
>gi|408530693|emb|CCK28867.1| integral membrane protein [Streptomyces davawensis JCM 4913]
Length = 296
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 57/98 (58%), Gaps = 2/98 (2%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
Y+ +T+ F H + HL N+ L+ G +E G Y +G A + +++L+
Sbjct: 133 YRLLTSMFLHGSVIHLLFNMLSLWWLGGPLEAALGRARYLALYFVSGLAGSALAYLLAEP 192
Query: 196 NAVSVGASGAVFGLF-AISVLV-KMSWDWRKILEVLIL 231
N ++GASGA+FGLF A +VL+ ++++D R I+ +L +
Sbjct: 193 NTATLGASGAIFGLFGATAVLMRRLNYDMRPIIALLAI 230
>gi|386360019|ref|YP_006058264.1| hypothetical protein TtJL18_0572 [Thermus thermophilus JL-18]
gi|383509046|gb|AFH38478.1| putative membrane protein [Thermus thermophilus JL-18]
Length = 210
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 66/153 (43%), Gaps = 29/153 (18%)
Query: 55 KLRPLRHPSLTLRSRLVCNMSGSDMISQLELDKPEERRKPKKSVNGVFWIILLNLGLYVA 114
+ P R P+L +RS + N++ LL L L +
Sbjct: 6 DINPARRPALVVRSLVALNVAA----------------------------FLLELLLGPS 37
Query: 115 DHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGL 174
V ++ + +L+ Y+ +T+ F H HL SN++FL++FG VE+ G
Sbjct: 38 QVVAKMGFVPALFFQDPLGEGYRILTSMFLHGGLFHLLSNMWFLWVFGDNVEDRMGGERF 97
Query: 175 WLSYIFTGAAANFVSWLILPKNAVS-VGASGAV 206
L Y+ G AA L +P + V +GASGAV
Sbjct: 98 LLFYLLGGVAAALAQALFMPASTVPMIGASGAV 130
>gi|323453274|gb|EGB09146.1| hypothetical protein AURANDRAFT_63657 [Aureococcus anophagefferens]
Length = 1186
Score = 53.1 bits (126), Expect = 1e-04, Method: Composition-based stats.
Identities = 34/142 (23%), Positives = 64/142 (45%), Gaps = 13/142 (9%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+ + +T H ++HL N+ L + G E+E G+ L +++ ++ + P
Sbjct: 905 YLRLLTHTVGHTGYDHLKGNMVNLLLVGPASEKEFGSMNLLKIFLYVAVSSAVAHMALGP 964
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFI 254
N +GASG VF L ++ L+ + +L G +V ++V F
Sbjct: 965 ANGYQLGASGVVFALILLNSLLSAHSGVVPLTFLLTAGLWVSDEV-------------FR 1011
Query: 255 GGYSVQSINHIAHLSGALFGVF 276
++ ++H+AHLSGA+ G
Sbjct: 1012 FFFARDQVSHVAHLSGAVVGTL 1033
>gi|307110920|gb|EFN59155.1| hypothetical protein CHLNCDRAFT_138007 [Chlorella variabilis]
Length = 247
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T AF H N HL+ N + L G VE G L Y+ A N S+L P
Sbjct: 76 WWRLLTPAFLHGNLMHLAVNCYSLNNLGPPVEGAAGPPRFLLMYLSAAVAGNVASFLGAP 135
Query: 195 KNAVSVGASGAVFGL 209
K +VS+GASGAVFG+
Sbjct: 136 K-SVSLGASGAVFGI 149
>gi|284047014|ref|YP_003397354.1| rhomboid family protein [Conexibacter woesei DSM 14684]
gi|283951235|gb|ADB53979.1| Rhomboid family protein [Conexibacter woesei DSM 14684]
Length = 228
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 49/92 (53%), Gaps = 3/92 (3%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ T+AF HAN HL NL L I G ++ G + L Y TG + S L
Sbjct: 68 WYRIFTSAFLHANAAHLFGNLVALVILGGVLTLAAGPLRMVLVYA-TGLLGSAFSVLAFA 126
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWRKIL 226
++VGASGA+FGL +++V W R++L
Sbjct: 127 PETLTVGASGAIFGLAGGALVV--GWRQRRVL 156
>gi|421766507|ref|ZP_16203279.1| GlpG protein [Lactococcus garvieae DCC43]
gi|407625017|gb|EKF51742.1| GlpG protein [Lactococcus garvieae DCC43]
Length = 230
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
++ VT F H W H N L+ G+ VE G+ L YI +G N V++L P
Sbjct: 63 WRLVTPIFVHIGWTHFLMNTLTLFFIGRQVEAVFGSLNFSLIYILSGIFGNAVTFLFSP- 121
Query: 196 NAVSVGASGAVFGLFA 211
N +S GAS ++FGLFA
Sbjct: 122 NTLSAGASTSIFGLFA 137
>gi|373859824|ref|ZP_09602547.1| Rhomboid family protein [Bacillus sp. 1NLA3E]
gi|372450467|gb|EHP23955.1| Rhomboid family protein [Bacillus sp. 1NLA3E]
Length = 244
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 65/131 (49%), Gaps = 10/131 (7%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+++F+T F H+ + H+ N F L +FG +E+ G L Y+ G AN ++L+ P
Sbjct: 58 YWRFITPIFLHSGFAHMLFNSFSLVLFGPALEKMLGKTKFTLLYLAGGTLANVATYLVNP 117
Query: 195 KNAVSVGASGAVFGLFAIS---VLVKMSWDWRK----ILEVLILG---QFVVEKVMEAAQ 244
+ VG+SGA+F LF +L K R+ +L + ++G F+ V AA
Sbjct: 118 LSYSHVGSSGAIFALFGFYLAIILFKKHLLSRQNSQIVLTITVIGLVMTFIQPNVNVAAH 177
Query: 245 ASAGMSGTFIG 255
+SG IG
Sbjct: 178 VFGLISGFLIG 188
>gi|456972143|gb|EMG12595.1| peptidase, S54 family [Leptospira interrogans serovar Grippotyphosa
str. LT2186]
Length = 226
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ VT F HA + HL N F L I VE G + YIF+G + S + P
Sbjct: 86 WWRLVTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLILYIFSGLCGSLASIVWYP 145
Query: 195 KNAVSVGASGAVFGLF-AISVLVKMS 219
N +SVGASGA+FGL+ AI LV M
Sbjct: 146 -NTISVGASGAIFGLYGAILGLVLMD 170
>gi|32473353|ref|NP_866347.1| hypothetical protein RB4835 [Rhodopirellula baltica SH 1]
gi|32398033|emb|CAD78127.1| probable membrane protein [Rhodopirellula baltica SH 1]
Length = 395
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 10/119 (8%)
Query: 104 IILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGK 163
II N GL++ + + + L L + +Q+VT+AF HA+W+HL N+ FL+ FG
Sbjct: 6 IIAANTGLFLLTGMGEYGAHDWLILEFDRINPFQWVTSAFMHASWSHLIGNMVFLWCFGL 65
Query: 164 LVEEEEG-------NFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFAISVL 215
++E + G GL LS GA ++ ++GASG +F L A++V+
Sbjct: 66 VIEGKLGWQRFSLLYLGLALS---DGAIGQIPMFMFSDGQGGALGASGVIFALLAVAVI 121
>gi|428311879|ref|YP_007122856.1| hypothetical protein Mic7113_3730 [Microcoleus sp. PCC 7113]
gi|428253491|gb|AFZ19450.1| putative membrane protein [Microcoleus sp. PCC 7113]
Length = 244
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
Query: 133 PAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLI 192
P +T+ F HA++ H+ N+ FL+IFG +EEE G + Y+ G A W
Sbjct: 67 PEPLTLITSQFLHASFTHVGFNMLFLWIFGNNIEEELGRVKFLIFYLACGVLAALTQWFF 126
Query: 193 LPKNAV-SVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQF 234
++ V S+GASGA+ G+ +L + K++ L LG F
Sbjct: 127 SMQSGVPSLGASGAIAGVMGAYIL---KFPRAKVVTFLPLGFF 166
>gi|196250548|ref|ZP_03149238.1| Rhomboid family protein [Geobacillus sp. G11MC16]
gi|196209897|gb|EDY04666.1| Rhomboid family protein [Geobacillus sp. G11MC16]
Length = 205
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 44/78 (56%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+++ ++ H ++NH+++N L++FG +E G L YI G AN + L+LP
Sbjct: 58 YWRLISPLVLHYDFNHMAANSLSLWLFGPWLERALGKGKFLLLYIGGGVGANIATVLLLP 117
Query: 195 KNAVSVGASGAVFGLFAI 212
VGASGA+F LF +
Sbjct: 118 PMYSHVGASGAIFALFGM 135
>gi|333992831|ref|YP_004525445.1| serine protease [Mycobacterium sp. JDM601]
gi|333488799|gb|AEF38191.1| serine protease [Mycobacterium sp. JDM601]
Length = 264
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 77/177 (43%), Gaps = 21/177 (11%)
Query: 60 RHPS------LTLRSRLVCN--MSGSDMISQLELDKPEERRKPKKS---VNGVFWIILLN 108
RHP T R +C M G+ + Q +D ++ P++S V +++
Sbjct: 6 RHPDRATALRCTRCGRYICGDCMRGAA-VGQHCVDCAQQGAAPRRSRPMVRAASTTPVIS 64
Query: 109 LGLYVADHVFQVRSIKSLYLYHNFPAW---------YQFVTAAFCHANWNHLSSNLFFLY 159
GL + + + + S L W Y+ +T+AF H HL N++ LY
Sbjct: 65 YGLIALNVLAFIGQMSSHQLDSELVLWSPAVADGQLYRLLTSAFLHYGAMHLLLNMWALY 124
Query: 160 IFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFAISVLV 216
+ G +E G Y+ + + +L+ P N + GASGA+FGLF +++V
Sbjct: 125 VVGPPLEGLLGRSRFSALYLLSALGGSVTVYLLAPLNTATAGASGAIFGLFGATLIV 181
>gi|423387285|ref|ZP_17364539.1| hypothetical protein ICE_05029 [Bacillus cereus BAG1X1-2]
gi|423526470|ref|ZP_17502915.1| hypothetical protein IGE_00022 [Bacillus cereus HuB1-1]
gi|401629248|gb|EJS47073.1| hypothetical protein ICE_05029 [Bacillus cereus BAG1X1-2]
gi|402456264|gb|EJV88040.1| hypothetical protein IGE_00022 [Bacillus cereus HuB1-1]
Length = 190
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 44/77 (57%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T+ H + H SN FL+ G +E++ G+F ++ + +G + N S++I+P
Sbjct: 47 WWRVITSLLVHVDLQHFLSNSIFLFALGSSIEKQLGHFSFFILFFLSGISGNISSYIIMP 106
Query: 195 KNAVSVGASGAVFGLFA 211
+ GASG +FGL
Sbjct: 107 PEYIHAGASGGIFGLLG 123
>gi|390450206|ref|ZP_10235800.1| rhomboid-like protein [Nitratireductor aquibiodomus RA22]
gi|389662771|gb|EIM74325.1| rhomboid-like protein [Nitratireductor aquibiodomus RA22]
Length = 255
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 133 PAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLI 192
P ++T +F H + HL N+ FL++FG VE+ G+F + Y+ A +V I
Sbjct: 70 PEPLTYITYSFLHGDLMHLGGNMLFLWVFGDNVEDALGHFRYLIFYLACAVAGAYVHGFI 129
Query: 193 LPK-NAVSVGASGAVFGLFA 211
P NA +GASG++ G+ A
Sbjct: 130 APDSNAPLIGASGSIAGIVA 149
>gi|42779350|ref|NP_976597.1| rhomboid family protein [Bacillus cereus ATCC 10987]
gi|42735265|gb|AAS39205.1| rhomboid family protein [Bacillus cereus ATCC 10987]
Length = 190
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 40/77 (51%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T+ H + H N L++ G +E++ G+ + + +G N S+LI+P
Sbjct: 47 WWRLLTSLLVHVDLQHFLFNSICLFVLGSSIEKQLGHLSFIIIFFLSGILGNMSSYLIMP 106
Query: 195 KNAVSVGASGAVFGLFA 211
+ GASG +FGL
Sbjct: 107 HEYIHAGASGGIFGLLG 123
>gi|339448421|ref|ZP_08651977.1| peptidase S54, rhomboid domain-containing protein [Lactobacillus
fructivorans KCTC 3543]
Length = 224
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 8/131 (6%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T F H + H+ N LY GKL+E G+ ++ ++ +G N +S+ +
Sbjct: 58 WWRLITPIFVHIGFQHILINGITLYYLGKLIEPIVGHLRYFIIFMVSGICGNLMSFAL-- 115
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWRKILE------VLILGQFVVEKVMEAAQASAG 248
N +S G+S A+FGLF +++ + + VL + +V + G
Sbjct: 116 GNGISAGSSTAIFGLFGAFLMIAFQYRGNDFVRSTAKTFVLFVVINLVFDIFTPGIDIYG 175
Query: 249 MSGTFIGGYSV 259
G FIGGY V
Sbjct: 176 HIGGFIGGYLV 186
>gi|392533728|ref|ZP_10280865.1| rhomboid-like protein [Pseudoalteromonas arctica A 37-1-2]
Length = 361
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP- 194
+ +T F H + HL N++FLYI G +E+ G+ L Y+ G A+F S+++ P
Sbjct: 197 WTVLTCVFLHGSIMHLVGNMYFLYIVGDNLEDVLGHKRFLLWYLACGLLASFASYIVSPM 256
Query: 195 KNAVSVGASGAVFGLFAISVL 215
N VGASGA+ GLF + ++
Sbjct: 257 SNIPGVGASGAIAGLFGMYLI 277
>gi|384184311|ref|YP_005570207.1| hypothetical protein CT43_CH0223 [Bacillus thuringiensis serovar
chinensis CT-43]
gi|410672599|ref|YP_006924970.1| hypothetical protein BTB_c02640 [Bacillus thuringiensis Bt407]
gi|452196605|ref|YP_007476686.1| Rhomboid family protein [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|326938020|gb|AEA13916.1| hypothetical protein CT43_CH0223 [Bacillus thuringiensis serovar
chinensis CT-43]
gi|409171728|gb|AFV16033.1| hypothetical protein BTB_c02640 [Bacillus thuringiensis Bt407]
gi|452101998|gb|AGF98937.1| Rhomboid family protein [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 190
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 44/77 (57%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T+ H + H SN FL+ G +E++ G+F ++ + +G + N S++I+P
Sbjct: 47 WWRVITSLLVHVDLQHFLSNSIFLFALGSSIEKQLGHFSFFILFFLSGISGNISSYIIMP 106
Query: 195 KNAVSVGASGAVFGLFA 211
+ GASG +FGL
Sbjct: 107 PEYIHAGASGGIFGLLG 123
>gi|312870529|ref|ZP_07730647.1| peptidase, S54 family [Lactobacillus oris PB013-T2-3]
gi|311093926|gb|EFQ52252.1| peptidase, S54 family [Lactobacillus oris PB013-T2-3]
Length = 215
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 69/144 (47%), Gaps = 15/144 (10%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T F H + HL N LY G +E+ G++ L + Y+ + N +S LP
Sbjct: 50 WWRLITPVFVHIGFAHLLINSITLYFIGMYIEQLFGHWRLLIIYLGSAVVGNLMSAYWLP 109
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQF-------VVEKVMEAAQASA 247
+S GAS +FGLF +++ S+ + L +L QF +V +M A
Sbjct: 110 AG-ISAGASTGIFGLFGAFIMLGASFRENQALRMLSR-QFLILVVLNIVTDLMVPGIDLA 167
Query: 248 GMSGTFIGGYSVQSINHIAHLSGA 271
G G FIGG+ +A+L GA
Sbjct: 168 GHLGGFIGGF------LLAYLVGA 185
>gi|418695529|ref|ZP_13256548.1| peptidase, S54 family [Leptospira kirschneri str. H1]
gi|409956614|gb|EKO15536.1| peptidase, S54 family [Leptospira kirschneri str. H1]
Length = 514
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T F HA++ HL N F L I VE G + YIF+G + S + P
Sbjct: 374 WWRLLTNVFVHASFPHLFFNGFGLIISAIFVEPILGRIRFLILYIFSGLCGSLASIVWYP 433
Query: 195 KNAVSVGASGAVFGLF-AISVLVKMS 219
N +SVGASGA+FGL+ AI LV M
Sbjct: 434 -NTISVGASGAIFGLYGAILGLVLMD 458
>gi|406669543|ref|ZP_11076813.1| hypothetical protein HMPREF9707_00716 [Facklamia ignava CCUG 37419]
gi|405583239|gb|EKB57207.1| hypothetical protein HMPREF9707_00716 [Facklamia ignava CCUG 37419]
Length = 228
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++F+TA+F H + H N+ LY GK +E G+F Y+F N S L
Sbjct: 59 WWRFITASFIHIGFEHFIFNMITLYFLGKDIEALLGHFNFSCIYLFACVGGNLFS--SLA 116
Query: 195 KNAVSVGASGAVFGLFAISVLVK 217
VS GAS +FGLFA +++
Sbjct: 117 NLNVSAGASTGIFGLFACYIILS 139
>gi|269976061|ref|ZP_06183065.1| rhomboid family membrane protein [Mobiluncus mulieris 28-1]
gi|307700490|ref|ZP_07637526.1| peptidase, S54 family [Mobiluncus mulieris FB024-16]
gi|269935889|gb|EEZ92419.1| rhomboid family membrane protein [Mobiluncus mulieris 28-1]
gi|307614297|gb|EFN93530.1| peptidase, S54 family [Mobiluncus mulieris FB024-16]
Length = 267
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 90/191 (47%), Gaps = 16/191 (8%)
Query: 89 EERRKPKKSVNGVFW-IILLNLGLYVADHVFQ--VRSIKSLYLYHNFPAWYQFVTAAFCH 145
E R PK + V W + L L ++VA +F +R + F W +F++AAF H
Sbjct: 9 ENTRAPKPPKSFVTWGLCLAMLVIWVATLLFPTLIRDFAFMPAAALFEPW-RFLSAAFLH 67
Query: 146 ANWN--HLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKN-----AV 198
+ HL N + L++ G+ +E G+ L LS++ AA+ L N
Sbjct: 68 SIPMPFHLGFNCWALWVVGRALEPIMGHTKLLLSFVICALAASLACCLTALLNLQAWLTF 127
Query: 199 SVGASGAVFGLF----AISVLVKMSW-DWRKILEVLILGQFVVEKVMEAAQASAGMSGTF 253
+VGASGAVFG F AI ++++ + + ++ + + FV+ V A +G
Sbjct: 128 TVGASGAVFGFFGIMLAIQRMLRLPYTEMAALIGINFVIGFVLPNVAWVAHLGGLAAGLA 187
Query: 254 IGGYSVQSINH 264
IGG++ + H
Sbjct: 188 IGGFTAWRLRH 198
>gi|223935890|ref|ZP_03627805.1| Rhomboid family protein [bacterium Ellin514]
gi|223895491|gb|EEF61937.1| Rhomboid family protein [bacterium Ellin514]
Length = 282
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAAN--FVSWLI 192
+++ VT+AF HANW HL N+F LY FG+L+E G ++LS F G WL
Sbjct: 46 YHRLVTSAFLHANWRHLFFNMFGLYAFGRLIESIHGPL-MFLSIYFAGIIGGDLLALWLH 104
Query: 193 LPKNAVSVGASGAVFGL 209
+ GASG V G+
Sbjct: 105 RNHEYRAYGASGGVCGI 121
>gi|29830873|ref|NP_825507.1| hypothetical protein SAV_4330 [Streptomyces avermitilis MA-4680]
gi|29607986|dbj|BAC72042.1| putative membrane protein [Streptomyces avermitilis MA-4680]
Length = 298
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 59/100 (59%), Gaps = 4/100 (4%)
Query: 136 YQFVTAAFCHA--NWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLIL 193
Y+ +TA F H ++ H+ N+ L+ G +E G Y +G A + +++LI
Sbjct: 134 YRLLTAMFLHDPHSYVHILFNMLSLWWIGGPLEAALGRIRYLTLYFVSGLAGSGLTYLIA 193
Query: 194 PKNAVSVGASGAVFGLF-AISVLV-KMSWDWRKILEVLIL 231
N S+GASGA+FGLF A +VL+ ++++D R ++ +L++
Sbjct: 194 APNQPSLGASGAIFGLFGATAVLMRRLNYDMRPVIALLVI 233
>gi|261878951|ref|ZP_06005378.1| rhomboid family protein [Prevotella bergensis DSM 17361]
gi|270334462|gb|EFA45248.1| rhomboid family protein [Prevotella bergensis DSM 17361]
Length = 307
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 75/184 (40%), Gaps = 61/184 (33%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAAN--------- 186
YQ +T F H W H+ N+F L++FG +VE G YIF G A
Sbjct: 50 YQLLTYMFMHGGWEHIILNMFMLWMFGSVVERMWGGKRFLFYYIFCGIGAGVMQEIAQFF 109
Query: 187 FVSWLILPKNAV--------------------SVGASGAVFGL-------------FAIS 213
+V +++ + A+ +VGASGA++ L F I
Sbjct: 110 WVYFMLDGQQALGIAESFSVMHQLSGQLNGLTTVGASGAIYALLLAFGMMFPNEKMFIIP 169
Query: 214 VLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQSINHIAHLSGALF 273
+ V + W +++G VVE ++ MSG +I H+AHL G +F
Sbjct: 170 IPVPIKAKW------MVMGAIVVELF-----SAMAMSG--------DNIAHLAHLGGMIF 210
Query: 274 GVFL 277
G FL
Sbjct: 211 GFFL 214
>gi|359683182|ref|ZP_09253183.1| intramembrane protease [Leptospira santarosai str. 2000030832]
gi|410450906|ref|ZP_11304933.1| peptidase, S54 family [Leptospira sp. Fiocruz LV3954]
gi|418746239|ref|ZP_13302569.1| peptidase, S54 family [Leptospira santarosai str. CBC379]
gi|418752404|ref|ZP_13308670.1| peptidase, S54 family [Leptospira santarosai str. MOR084]
gi|422002893|ref|ZP_16350127.1| intramembrane protease [Leptospira santarosai serovar Shermani str.
LT 821]
gi|409967293|gb|EKO35124.1| peptidase, S54 family [Leptospira santarosai str. MOR084]
gi|410015218|gb|EKO77323.1| peptidase, S54 family [Leptospira sp. Fiocruz LV3954]
gi|410792786|gb|EKR90711.1| peptidase, S54 family [Leptospira santarosai str. CBC379]
gi|417258363|gb|EKT87751.1| intramembrane protease [Leptospira santarosai serovar Shermani str.
LT 821]
gi|456873624|gb|EMF88986.1| peptidase, S54 family [Leptospira santarosai str. ST188]
Length = 197
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 68/145 (46%), Gaps = 12/145 (8%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+Y +T+ F HA+W HL N+ Y FGK +E G L Y+ T A + +SW
Sbjct: 40 YYTLLTSGFIHADWMHLIFNMISFYSFGKNLETTVGPIKFLLFYLGTILATSVISWRKNL 99
Query: 195 KNAV--SVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGT 252
+N + ++GASG V G+ ++L + + F+ + A A + T
Sbjct: 100 ENPLYATLGASGGVCGVLFATILFYPNLS--------LYMMFIPIPIPGAIYAVLYLVYT 151
Query: 253 FIGGYSVQS--INHIAHLSGALFGV 275
+ S S INH AHL GAL G+
Sbjct: 152 YFSSKSGHSDGINHDAHLWGALCGI 176
>gi|325281187|ref|YP_004253729.1| Rhomboid family protein [Odoribacter splanchnicus DSM 20712]
gi|324312996|gb|ADY33549.1| Rhomboid family protein [Odoribacter splanchnicus DSM 20712]
Length = 198
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 67/147 (45%), Gaps = 15/147 (10%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGL----WLSYIFTGAAANFVSW 190
WY+ ++ F HA+W HL N+F + FGK +EE G +L F G S
Sbjct: 40 WYRIISHGFVHADWVHLFVNMFTFWSFGKYIEETFRYLGFGEGAFLLLYFGGMVVASASD 99
Query: 191 LILPKNA---VSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASA 247
+I +NA S+GASGAV + ++ + WD + V+ + + + A
Sbjct: 100 VIRYRNAAWYTSIGASGAVSAVLFTAIFLN-PWDKILLFAVIPIPGILFGLLYLAYCQYM 158
Query: 248 GMSGTFIGGYSVQSINHIAHLSGALFG 274
G+ +INH AH GA++G
Sbjct: 159 ARQGS-------DNINHNAHFYGAIYG 178
>gi|312871798|ref|ZP_07731886.1| peptidase, S54 family [Lactobacillus iners LEAF 3008A-a]
gi|312875588|ref|ZP_07735589.1| peptidase, S54 family [Lactobacillus iners LEAF 2053A-b]
gi|311088842|gb|EFQ47285.1| peptidase, S54 family [Lactobacillus iners LEAF 2053A-b]
gi|311092740|gb|EFQ51096.1| peptidase, S54 family [Lactobacillus iners LEAF 3008A-a]
Length = 232
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+++ TA F HA + H+ N+ +Y FG +E+ G+ Y+ +G N +S+ +
Sbjct: 62 FWRLFTAQFIHAGFFHIICNIVMIYFFGMFLEQFLGHIRYLTIYLLSGVGGNLLSFALGQ 121
Query: 195 KNAVSVGASGAVFGL 209
N +S GAS AVFGL
Sbjct: 122 DNVISCGASTAVFGL 136
>gi|291515609|emb|CBK64819.1| Uncharacterized membrane protein (homolog of Drosophila rhomboid)
[Alistipes shahii WAL 8301]
Length = 200
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 70/161 (43%), Gaps = 41/161 (25%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLI--- 192
YQF+T F HAN+ H+ N+F L++FG+ +E E G+ Y+ G A + +L
Sbjct: 50 YQFITYMFLHANFEHIFFNMFALWMFGRTLEYELGSQRFLTFYMVCGVGAALIQYLTALA 109
Query: 193 ---LPKNAVSVGASGAVFG-LFAISVL------------VKMSWDWRKILEVLILGQFVV 236
LP + VGASGAV G L A V+ + M W I+ +I
Sbjct: 110 FGELP--LLLVGASGAVMGLLLAFGVMHPNAVIMLLIPPIPMKAKWFVIIYAVI------ 161
Query: 237 EKVMEAAQASAGMSGTFIGGYSVQSINHIAHLSGALFGVFL 277
F+G V ++ H AH+ G L+G L
Sbjct: 162 --------------ELFLGWKGVGNVAHFAHVGGMLWGFLL 188
>gi|307153617|ref|YP_003889001.1| rhomboid family protein [Cyanothece sp. PCC 7822]
gi|306983845|gb|ADN15726.1| Rhomboid family protein [Cyanothece sp. PCC 7822]
Length = 236
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 75/167 (44%), Gaps = 16/167 (9%)
Query: 122 SIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFT 181
S +Y P + +T+ F H ++ H+ N+ FL+IFG VE++ G+ + Y+
Sbjct: 56 SFSGYTIYQPVPESFTLITSQFLHGSFLHIIGNMLFLWIFGNNVEDQLGHVKYLVFYLSC 115
Query: 182 GAAANFVSWLILPKNAV-SVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVM 240
G A W P + + S+GASGA+ G+ +L + ++L ++ LG F +
Sbjct: 116 GVLAALAQWYFSPYSIIPSLGASGAIAGVMGAYIL---KFPQAQVLTLIPLGFFFWTVRI 172
Query: 241 EAA---------QASAGMSGTFIG---GYSVQSINHIAHLSGALFGV 275
A QA G S + G I + AH G +FGV
Sbjct: 173 PAVFFLGFWFIQQAFYGFSSLRVPANIGMENGGIAYWAHAGGFVFGV 219
>gi|417302529|ref|ZP_12089628.1| Peptidase S54, rhomboid [Rhodopirellula baltica WH47]
gi|327541162|gb|EGF27707.1| Peptidase S54, rhomboid [Rhodopirellula baltica WH47]
Length = 410
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 61/116 (52%), Gaps = 4/116 (3%)
Query: 104 IILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGK 163
II N GL++ + + + L L + +Q+VT+AF HA+W+HL N+ FL+ FG
Sbjct: 21 IIAANTGLFLLTGMGEYGAHDWLILEFDRINPFQWVTSAFMHASWSHLIGNMVFLWCFGL 80
Query: 164 LVEEEEGNFGLWLSY----IFTGAAANFVSWLILPKNAVSVGASGAVFGLFAISVL 215
++E + G L Y + GA ++ ++GASG +F L A++V+
Sbjct: 81 VIEGKLGWQRFTLLYLGLALADGAIGQIPMFMFSDGQGGALGASGVIFALLAVAVI 136
>gi|417003054|ref|ZP_11942140.1| peptidase, S54 family [Anaerococcus prevotii ACS-065-V-Col13]
gi|325478800|gb|EGC81910.1| peptidase, S54 family [Anaerococcus prevotii ACS-065-V-Col13]
Length = 227
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 51/93 (54%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ ++AAF H + H+ N++FLY G L E G+ + Y+ G N ++
Sbjct: 56 WWRILSAAFIHIGFFHIMFNMYFLYNIGPLFERLYGSINFLIIYLLAGVMGNLFTYAFGD 115
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWRKILE 227
+ VS GAS +++G+F +++ + +++ +L
Sbjct: 116 VSTVSAGASTSLYGMFGLAMGLMINYKDDAVLR 148
>gi|134300733|ref|YP_001114229.1| rhomboid family protein [Desulfotomaculum reducens MI-1]
gi|134053433|gb|ABO51404.1| Rhomboid family protein [Desulfotomaculum reducens MI-1]
Length = 215
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 61/131 (46%), Gaps = 7/131 (5%)
Query: 86 DKPEERRKPKKSV-----NGVFWIILLNLGLYVADHVFQVRSIKS-LYLYHNFPAWYQFV 139
D RR P ++ N W+ +LG Y+ + +F + + ++ Y ++
Sbjct: 6 DNIPSRRFPLVTIILILLNTFAWLYEQSLGPYMDNLIFALGVTPAEIFKYGLLGQFFFMT 65
Query: 140 TAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVS 199
TA F H +W H N+ +L+IFG VE+ G L Y+ TG +A P +
Sbjct: 66 TAMFLHGSWMHFLGNMLYLWIFGDNVEDRMGKLRFLLFYLITGYSATLAHVFSDPTSTSP 125
Query: 200 -VGASGAVFGL 209
+GASGA+ G+
Sbjct: 126 LIGASGAIAGV 136
>gi|288817900|ref|YP_003432247.1| rhomboid-like protein [Hydrogenobacter thermophilus TK-6]
gi|384128662|ref|YP_005511275.1| rhomboid family protein [Hydrogenobacter thermophilus TK-6]
gi|288787299|dbj|BAI69046.1| rhomboid-like protein [Hydrogenobacter thermophilus TK-6]
gi|308751499|gb|ADO44982.1| Rhomboid family protein [Hydrogenobacter thermophilus TK-6]
Length = 216
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAA----NFVSWL 191
Y +T F H +W H+ N++FL+IFG VE+ G L YI +G A FVS++
Sbjct: 58 YTLLTHMFLHGSWLHIIGNMWFLWIFGDNVEDRLGRLRYLLFYIISGLGAALLQTFVSFV 117
Query: 192 ILPKNAVSVGASGAVFGLFA 211
+ ++ VGASGA+ G+
Sbjct: 118 LGGEDVPMVGASGAISGVLG 137
>gi|407976842|ref|ZP_11157738.1| rhomboid-like protein [Nitratireductor indicus C115]
gi|407427741|gb|EKF40429.1| rhomboid-like protein [Nitratireductor indicus C115]
Length = 255
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 133 PAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLI 192
P ++T +F H + HL N+ FL++FG VE+ G+F + Y+ A ++ I
Sbjct: 70 PEPLTYITYSFLHGDLMHLGGNMLFLWVFGDNVEDALGHFRYLVFYLACAVAGAYMHGFI 129
Query: 193 LPK-NAVSVGASGAVFGLFA 211
P NA +GASGA+ G+ A
Sbjct: 130 APDSNAPLIGASGAIAGIVA 149
>gi|325912656|ref|ZP_08175039.1| peptidase, S54 family [Lactobacillus iners UPII 60-B]
gi|325478077|gb|EGC81206.1| peptidase, S54 family [Lactobacillus iners UPII 60-B]
Length = 232
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+++ TA F HA + H+ N+ +Y FG +E+ G+ Y+ +G N +S+ +
Sbjct: 62 FWRLFTAQFIHAGFFHIICNIVMIYFFGMFLEQFLGHIRYLTIYLLSGVGGNLLSFALGQ 121
Query: 195 KNAVSVGASGAVFGL 209
N +S GAS AVFGL
Sbjct: 122 DNVISCGASTAVFGL 136
>gi|259500554|ref|ZP_05743456.1| conserved hypothetical protein [Lactobacillus iners DSM 13335]
gi|302191244|ref|ZP_07267498.1| membrane-associated serine protease [Lactobacillus iners AB-1]
gi|259167938|gb|EEW52433.1| conserved hypothetical protein [Lactobacillus iners DSM 13335]
Length = 232
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+++ TA F HA + H+ N+ +Y FG +E+ G+ Y+ +G N +S+ +
Sbjct: 62 FWRLFTAQFIHAGFFHIICNIVMIYFFGMFLEQFLGHIRYLTIYLLSGVGGNLLSFALGQ 121
Query: 195 KNAVSVGASGAVFGL 209
N +S GAS AVFGL
Sbjct: 122 DNVISCGASTAVFGL 136
>gi|417886300|ref|ZP_12530447.1| peptidase, S54 family [Lactobacillus oris F0423]
gi|341593798|gb|EGS36623.1| peptidase, S54 family [Lactobacillus oris F0423]
Length = 215
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 63/130 (48%), Gaps = 9/130 (6%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T F H + HL N LY G +E+ G++ L + Y+ + N +S LP
Sbjct: 50 WWRLITPVFVHIGFAHLLINSITLYFIGMYIEQLFGHWRLLVIYLGSAVVGNLMSAYWLP 109
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQF-------VVEKVMEAAQASA 247
+S GAS +FGLF +++ S+ + L +L QF +V +M A
Sbjct: 110 AG-ISAGASTGIFGLFGAFIMLGASFRENQALRMLSR-QFLILVVLNIVTDLMVPGIDLA 167
Query: 248 GMSGTFIGGY 257
G G FIGG+
Sbjct: 168 GHLGGFIGGF 177
>gi|417915043|ref|ZP_12558670.1| peptidase, S54 family [Streptococcus mitis bv. 2 str. SK95]
gi|342835492|gb|EGU69734.1| peptidase, S54 family [Streptococcus mitis bv. 2 str. SK95]
Length = 226
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 85/183 (46%), Gaps = 20/183 (10%)
Query: 90 ERRKPKKS----VNG-VFWIILLNLGLYVADHVFQVRSIKSLY--LYHNFPA-WYQFVTA 141
++R P S V G VF ++L+ G+ D V + ++Y + FP +++ +A
Sbjct: 6 DKRYPVTSFFLLVTGFVFLLMLITTGINF-DQVKTLFQFGAMYGPIIRLFPEQFWRLFSA 64
Query: 142 AFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVG 201
F H W H N+ LY G+ VEE G+ +L Y+ +G N + PK ++ G
Sbjct: 65 IFVHIGWEHFIVNMISLYFLGQQVEEIFGSKQFFLLYLLSGMMGNLFVFAFTPK-VLAAG 123
Query: 202 ASGAVFGLFAISVLVK----------MSWDWRKILEVLILGQFVVEKVMEAAQASAGMSG 251
AS +++GLFA ++++ + + + + I+G ++ + A + G
Sbjct: 124 ASTSLYGLFAAIIVLRYATRSPYIQQLGQSYLTLFVINIIGSILIPGISLAGHIGGAVGG 183
Query: 252 TFI 254
F+
Sbjct: 184 AFL 186
>gi|342874669|gb|EGU76647.1| hypothetical protein FOXB_12836 [Fusarium oxysporum Fo5176]
Length = 572
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+F+T+ F HA H+ NL K +E G L Y+ G N + P
Sbjct: 330 WYRFITSIFMHAGLIHIIFNLLLQLTIAKEMEMAIGPVRFLLVYMSAGIFGNIMGGNYAP 389
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWRK 224
SVGASGA+FG+ A+ VL+ + + W+
Sbjct: 390 PGQPSVGASGALFGIIAL-VLLDLLYSWKD 418
>gi|288803466|ref|ZP_06408898.1| rhomboid family protein [Prevotella melaninogenica D18]
gi|288334076|gb|EFC72519.1| rhomboid family protein [Prevotella melaninogenica D18]
Length = 318
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 88/221 (39%), Gaps = 67/221 (30%)
Query: 104 IILLNLGLYVADHVFQVRSIK-------SLYLYHNFPAWYQFVTAAFCHANWNHLSSNLF 156
++++N+ +++A +V + +I +L +F W QF T F H + H+ N+F
Sbjct: 11 LLIINILVFIATYVLRGLNIDLNDILGLHFFLASDFRIW-QFFTYMFMHGGFTHILMNMF 69
Query: 157 FLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWL----------------------ILP 194
L++FG +VE G YI G A L +LP
Sbjct: 70 MLWMFGMVVENVWGPRKFLFYYIVCGVGAGLCQELAQYGTYLVEGLAQYESVKIGTTVLP 129
Query: 195 KNAV-----SVGASGAVFG-------------LFAISVLVKMSWDWRKILEVLILGQFVV 236
N +VGASGA++G +F I + V + W +++G VV
Sbjct: 130 MNVYLNMMNTVGASGAIYGVLLAFGMLFPEERMFIIPIPVPIKAKW------IVMGSIVV 183
Query: 237 EKVMEAAQASAGMSGTFIGGYSVQSINHIAHLSGALFGVFL 277
E ++ G++ H+AHL G LFG L
Sbjct: 184 ELFSAIGTSNDGVA-------------HLAHLGGMLFGFIL 211
>gi|427707670|ref|YP_007050047.1| rhomboid family protein [Nostoc sp. PCC 7107]
gi|427360175|gb|AFY42897.1| Rhomboid family protein [Nostoc sp. PCC 7107]
Length = 239
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 4/114 (3%)
Query: 122 SIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFT 181
S + ++ P W +++ F H + HL+ N+ FL+IFG VE++ G+ L Y+
Sbjct: 56 SFAGVSVHQPVPEWATLISSQFLHGGFLHLAGNMLFLWIFGNNVEDKLGHAKYLLFYLAC 115
Query: 182 GAAANFVSWLILPK-NAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQF 234
G A+ W N S+GASGA+ G+ +L + +IL V+ LG F
Sbjct: 116 GILASLTQWYFSQNSNIPSLGASGAIAGVMGAYIL---RFPKAEILGVVPLGIF 166
>gi|427417308|ref|ZP_18907491.1| putative membrane protein [Leptolyngbya sp. PCC 7375]
gi|425760021|gb|EKV00874.1| putative membrane protein [Leptolyngbya sp. PCC 7375]
Length = 241
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 74/156 (47%), Gaps = 18/156 (11%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W+ +++ F H HL N+ +L+IFG +E++ G+ L Y+ GA A W+ P
Sbjct: 71 WFTLISSQFLHGGPAHLGGNMLYLWIFGNNIEDQMGHRRFILFYLACGALAGLSQWIFSP 130
Query: 195 KNAV-SVGASGAVFGLFA----------ISVLVKMSWDWR--KILEVLILGQFVVEKVME 241
+ + ++GASGA+ G+ I L+ + + + +I V LG + V +
Sbjct: 131 GSMIPTLGASGAIAGVMGAYIIRFPKAQILTLLPLFFIFTTVRIPAVFFLGFWFVMQAFN 190
Query: 242 AAQASAGMSGTFIGGYSVQSINHIAHLSGALFGVFL 277
+ AS G+S + + AH G +FGV L
Sbjct: 191 SI-ASLGVSADM----GTGGVAYWAHAGGFIFGVVL 221
>gi|302389193|ref|YP_003825014.1| rhomboid family protein [Thermosediminibacter oceani DSM 16646]
gi|302199821|gb|ADL07391.1| Rhomboid family protein [Thermosediminibacter oceani DSM 16646]
Length = 227
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 73/150 (48%), Gaps = 8/150 (5%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
Y F+T+ F H + HL SN++ L++FG VE+ G+ L Y+ +G A + P
Sbjct: 69 YPFITSIFLHGSTLHLISNMWILWLFGDNVEDRMGHIRFLLFYLLSGVIAGVFHLVFNPL 128
Query: 196 NAVS-VGASGAVFG-------LFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASA 247
+ V VGASGA+ G LF + ++ + + + + + V + AQ +
Sbjct: 129 SRVPVVGASGAIAGVMGAYFVLFPSARIITLVPTFFLVPIFIQIPAVVYLFLWFLAQLYS 188
Query: 248 GMSGTFIGGYSVQSINHIAHLSGALFGVFL 277
G + IGG +V I AH+ G + GV L
Sbjct: 189 GTVLSVIGGAAVSGIAWWAHIGGFVSGVLL 218
>gi|408397516|gb|EKJ76658.1| hypothetical protein FPSE_03208 [Fusarium pseudograminearum CS3096]
Length = 570
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+F+T+ F HA H+ NL K +E G L Y+ G N + P
Sbjct: 332 WYRFITSIFMHAGIIHIVFNLLLQLTIAKEMEMAIGPVRFLLVYMSAGIFGNIMGGNYAP 391
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWRK 224
SVGASGA+FG+ A+ VL+ + + W+
Sbjct: 392 PGQPSVGASGALFGIIAL-VLLDLLYSWKD 420
>gi|405984124|ref|ZP_11042428.1| hypothetical protein HMPREF9451_01546 [Slackia piriformis YIT
12062]
gi|404388260|gb|EJZ83343.1| hypothetical protein HMPREF9451_01546 [Slackia piriformis YIT
12062]
Length = 294
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
Y+FVT F H + HL+ N+ LY G L+E+ G L Y G N VS+L+
Sbjct: 122 YRFVTPMFLHLDLMHLAFNMVALYSVGALLEQVLGKANFVLLYFIGGITGNAVSYLVGMA 181
Query: 196 NA---VSVGASGAVFGLFAISVLV 216
+ VS GAS +VFGLF + L+
Sbjct: 182 DGGMTVSAGASTSVFGLFVATALL 205
>gi|418679207|ref|ZP_13240471.1| peptidase, S54 family [Leptospira kirschneri serovar Grippotyphosa
str. RM52]
gi|418686873|ref|ZP_13248037.1| peptidase, S54 family [Leptospira kirschneri serovar Grippotyphosa
str. Moskva]
gi|421090060|ref|ZP_15550861.1| peptidase, S54 family [Leptospira kirschneri str. 200802841]
gi|400320332|gb|EJO68202.1| peptidase, S54 family [Leptospira kirschneri serovar Grippotyphosa
str. RM52]
gi|410001323|gb|EKO51937.1| peptidase, S54 family [Leptospira kirschneri str. 200802841]
gi|410738580|gb|EKQ83314.1| peptidase, S54 family [Leptospira kirschneri serovar Grippotyphosa
str. Moskva]
Length = 514
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T F HA + HL N F L I VE G + YIF+G + S + P
Sbjct: 374 WWRLLTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLILYIFSGLCGSLASIVWYP 433
Query: 195 KNAVSVGASGAVFGLF-AISVLVKMS 219
N +SVGASGA+FGL+ AI LV M
Sbjct: 434 -NTISVGASGAIFGLYGAILGLVLMD 458
>gi|418741786|ref|ZP_13298160.1| peptidase, S54 family [Leptospira kirschneri serovar Valbuzzi str.
200702274]
gi|410751234|gb|EKR08213.1| peptidase, S54 family [Leptospira kirschneri serovar Valbuzzi str.
200702274]
Length = 514
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T F HA + HL N F L I VE G + YIF+G + S + P
Sbjct: 374 WWRLLTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLILYIFSGLCGSLASIVWYP 433
Query: 195 KNAVSVGASGAVFGLF-AISVLVKMS 219
N +SVGASGA+FGL+ AI LV M
Sbjct: 434 -NTISVGASGAIFGLYGAILGLVLMD 458
>gi|423507745|ref|ZP_17484312.1| hypothetical protein IG1_05286 [Bacillus cereus HD73]
gi|449086893|ref|YP_007419334.1| hypothetical protein HD73_0227 [Bacillus thuringiensis serovar
kurstaki str. HD73]
gi|402443144|gb|EJV75057.1| hypothetical protein IG1_05286 [Bacillus cereus HD73]
gi|449020650|gb|AGE75813.1| hypothetical protein HD73_0227 [Bacillus thuringiensis serovar
kurstaki str. HD73]
Length = 190
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 67/143 (46%), Gaps = 13/143 (9%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T+ H + H SN FL+ G +E++ G+F ++ + +G + N S++I+P
Sbjct: 47 WWRVITSLLVHVDLQHFLSNSIFLFALGSSIEKQLGHFSFFILFFLSGISGNISSYIIMP 106
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFI 254
+ GASG +FGL + L+ Q+ K E A S + +
Sbjct: 107 LEYIHAGASGGIFGLLGAQLF-------------LLYNQYRSSKPKEIAIFSIMILLLLL 153
Query: 255 GGYSVQSINHIAHLSGALFGVFL 277
+ S N I+HL+G + G L
Sbjct: 154 FTFFNPSANPISHLTGLITGGIL 176
>gi|398339922|ref|ZP_10524625.1| hypothetical protein LkirsB1_10989 [Leptospira kirschneri serovar
Bim str. 1051]
Length = 514
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T F HA + HL N F L I VE G + YIF+G + S + P
Sbjct: 374 WWRLLTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLILYIFSGLCGSLASIVWYP 433
Query: 195 KNAVSVGASGAVFGLF-AISVLVKMS 219
N +SVGASGA+FGL+ AI LV M
Sbjct: 434 -NTISVGASGAIFGLYGAILGLVLMD 458
>gi|307719843|ref|YP_003875375.1| rhomboid family protein [Spirochaeta thermophila DSM 6192]
gi|306533568|gb|ADN03102.1| rhomboid family protein [Spirochaeta thermophila DSM 6192]
Length = 213
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 54/112 (48%), Gaps = 11/112 (9%)
Query: 101 VFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYI 160
VF++ LN GL ++ LYL W Q V+ F HA++NH+ N+ L+
Sbjct: 29 VFFLTYLNRGL------LYYMALNPLYLLKGGMVW-QLVSYMFAHASFNHILFNMLGLFF 81
Query: 161 FGKLVEEEEGNFGLWLSYIFTGAAANFVS----WLILPKNAVSVGASGAVFG 208
FG VE E G+ L Y FTG A VS WL +GASG V+G
Sbjct: 82 FGLQVEREMGSREFLLFYFFTGIFAGLVSLLVYWLSGAYGVFLLGASGVVYG 133
>gi|336377068|gb|EGO05403.1| hypothetical protein SERLA73DRAFT_174545 [Serpula lacrymans var.
lacrymans S7.3]
gi|336390111|gb|EGO31254.1| hypothetical protein SERLADRAFT_456141 [Serpula lacrymans var.
lacrymans S7.9]
Length = 419
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 98/241 (40%), Gaps = 38/241 (15%)
Query: 46 NSPKLNLPIKLRPLRHPSLTLRSRLVCNMSGSDMISQLELDKPEERRKP-KKSVNGV--- 101
NS P+ L+P+ +P L + N+ R P K V GV
Sbjct: 128 NSRAQGTPVSLKPVVNPMLGPSESALINLGA--------------RFPPCMKIVQGVPET 173
Query: 102 FWIILLNLGLYVADHVFQVRSIKSLYLYHNFPA--WYQFVTAAFCHANWNHLSSNLFFLY 159
+ LN + + + I +HN W++F+TA F HA + H+ N+
Sbjct: 174 MQMACLNDTANPPNQLCSLEDICGFGGFHNQTPNQWFRFITAIFLHAGFIHIILNMIAQL 233
Query: 160 IFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFAIS---VLV 216
+E E G+ G ++Y G N + A S+GASGA+FG A++ +
Sbjct: 234 TVSAQIEREMGSAGFLITYFAAGIFGNVLGGNFSLVGAPSIGASGAIFGTVAVTWVDLFA 293
Query: 217 KMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQSINHIAHLSGALFGVF 276
+ +R + +++ + +E ++ A GY + +++ AHL G G+
Sbjct: 294 HWKYQYRPVRKLVFM---TIELILGIAL-----------GY-IPYVDNFAHLGGLCMGLL 338
Query: 277 L 277
+
Sbjct: 339 V 339
>gi|429764176|ref|ZP_19296501.1| peptidase, S54 family [Clostridium celatum DSM 1785]
gi|429188574|gb|EKY29452.1| peptidase, S54 family [Clostridium celatum DSM 1785]
Length = 324
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 137 QFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKN 196
+ +T F H H++ N++ L I G VE G L Y+F+ + S++ P N
Sbjct: 187 RLITCTFLHGGLAHIAFNMYALKIIGSEVEFAYGKIKYILIYLFSALGGSIFSYIFSP-N 245
Query: 197 AVSVGASGAVFGLFA 211
++SVGASGA+FGLF
Sbjct: 246 SISVGASGAIFGLFG 260
>gi|84687870|ref|ZP_01015738.1| rhomboid family protein [Maritimibacter alkaliphilus HTCC2654]
gi|84664125|gb|EAQ10621.1| rhomboid family protein [Rhodobacterales bacterium HTCC2654]
Length = 244
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 139 VTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAV 198
+T+ F H+ + H++ N+ FL+IFG +E+E G+FG + Y+ +G A L P + +
Sbjct: 63 ITSQFLHSGFWHIAGNMLFLWIFGDNLEDELGHFGFLVFYLASGVGAAMFQILPDPSSGI 122
Query: 199 S-VGASGAVFGLFAISVLV 216
VGASGA+ G+ +L+
Sbjct: 123 PMVGASGAIAGVMGGYLLL 141
>gi|374850826|dbj|BAL53805.1| rhomboid family protein [uncultured planctomycete]
Length = 221
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 137 QFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKN 196
+F+T+ F H W H N++ LY+FG VE+ G L Y+ G A ++ L P +
Sbjct: 55 RFITSLFLHGGWLHFLGNMWTLYLFGDNVEDRMGPVRFLLFYLLCGVLAGWIHVLAHPTS 114
Query: 197 AV-SVGASGAVFGLFAISVLV 216
V ++GASGA+ G+ A +L+
Sbjct: 115 LVPTIGASGAIAGVLAAYLLL 135
>gi|386347942|ref|YP_006046191.1| rhomboid family protein [Spirochaeta thermophila DSM 6578]
gi|339412909|gb|AEJ62474.1| Rhomboid family protein [Spirochaeta thermophila DSM 6578]
Length = 213
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 54/112 (48%), Gaps = 11/112 (9%)
Query: 101 VFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYI 160
VF++ LN GL ++ LYL W Q V+ F HA++NH+ N+ L+
Sbjct: 29 VFFLTYLNRGL------LYYMALNPLYLLKGGMVW-QLVSYMFAHASFNHILFNMLGLFF 81
Query: 161 FGKLVEEEEGNFGLWLSYIFTGAAANFVS----WLILPKNAVSVGASGAVFG 208
FG VE E G+ L Y FTG A VS WL +GASG V+G
Sbjct: 82 FGLQVEREMGSREFLLFYFFTGIFAGLVSLLVYWLSGAYGVFLLGASGVVYG 133
>gi|300698196|ref|YP_003748857.1| putative rhomboid protease [Ralstonia solanacearum CFBP2957]
gi|299074920|emb|CBJ54489.1| putative rhomboid protease [Ralstonia solanacearum CFBP2957]
Length = 543
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 42/75 (56%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ ++A F HA HL+ N+F LY G VE G L Y+ G + +S
Sbjct: 227 WWRLLSATFLHAGVLHLAINMFGLYATGVAVERIYGPVAYLLIYLGAGLLGSALSLSFAA 286
Query: 195 KNAVSVGASGAVFGL 209
++A+ VGASGAVFG+
Sbjct: 287 QHAIGVGASGAVFGV 301
>gi|89055746|ref|YP_511197.1| rhomboid-like protein [Jannaschia sp. CCS1]
gi|88865295|gb|ABD56172.1| Rhomboid-like protein [Jannaschia sp. CCS1]
Length = 284
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 73/146 (50%), Gaps = 11/146 (7%)
Query: 139 VTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAV 198
VT+ F H W HL N+ FL+IFG +E+ G+ G + Y+ +G AA L P + +
Sbjct: 66 VTSMFLHGGWMHLIGNMLFLWIFGDNLEDLMGHLGFAVFYLASGVAAAGGQILSDPSSTL 125
Query: 199 S-VGASGAVFGLFAISVLV--KMSWDWRKILEVLI----LGQFVVEKVMEAAQASAGMSG 251
VGASGA+ G+ +L+ + D IL V I + +++ + Q +G+S
Sbjct: 126 PMVGASGAIAGVMGGYLLMFPRARIDVLVILIVFIKIFTIPAWLMLGLWFGLQLVSGLSM 185
Query: 252 TFIGGYSVQSINHIAHLSGALFGVFL 277
+GG + + AH G + GV L
Sbjct: 186 DLVGG----GVAYWAHAGGFVAGVIL 207
>gi|443488760|ref|YP_007366907.1| rhomboid family serine protease [Mycobacterium liflandii 128FXT]
gi|442581257|gb|AGC60400.1| rhomboid family serine protease [Mycobacterium liflandii 128FXT]
Length = 254
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
Y+ VT+AF H HL N++ LYI G +E G Y + + + +LI P
Sbjct: 77 YRLVTSAFMHYGTLHLVFNMWALYIVGPPLEMWLGRLRFGGLYALSALGGSVLVYLIAPL 136
Query: 196 NAVSVGASGAVFGLFAISVLV--KMSWDWRKILEVL 229
N + GASGA+FGLF + +V +++ D R ++ ++
Sbjct: 137 NTATAGASGAIFGLFGATFVVAKRLNLDIRWVVALI 172
>gi|428209176|ref|YP_007093529.1| rhomboid family protein [Chroococcidiopsis thermalis PCC 7203]
gi|428011097|gb|AFY89660.1| Rhomboid family protein [Chroococcidiopsis thermalis PCC 7203]
Length = 227
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 73/159 (45%), Gaps = 21/159 (13%)
Query: 133 PAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLI 192
P W T+ F H + H++ N+ FL++FG +E+ G+ Y+ GA A W
Sbjct: 66 PEWLTLFTSQFLHGGFLHIAGNMLFLWVFGNNIEDRLGHIKFLFFYVTCGALAALAQWFF 125
Query: 193 LPKNAV-SVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEA--------- 242
+ + ++GASGA+ G+ +L + ++L ++ LG F+ + A
Sbjct: 126 SQNSPIPALGASGAIAGVLGAYIL---RFPRAQVLTLVPLGFFITTIRIPAMFFLGVWFV 182
Query: 243 AQASAGMSG----TFIGGYSVQSINHIAHLSGALFGVFL 277
QA G++ + +GG + + AH G +FG L
Sbjct: 183 QQAFYGIASLQAPSSVGG----GVAYWAHAGGFVFGAIL 217
>gi|385811261|ref|YP_005847657.1| hypothetical protein IALB_2686 [Ignavibacterium album JCM 16511]
gi|383803309|gb|AFH50389.1| Hypothetical protein IALB_2686 [Ignavibacterium album JCM 16511]
Length = 231
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 47/74 (63%), Gaps = 3/74 (4%)
Query: 140 TAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAV- 198
++ F H W H+ N+ LYIFG VE+ G+F L Y+ TG AA+ ++ + L +N++
Sbjct: 66 SSMFLHGGWAHILGNMIALYIFGDNVEDRLGSFRYLLFYLLTGIAAS-LTHIFLNQNSIV 124
Query: 199 -SVGASGAVFGLFA 211
++GASGA+ G+ A
Sbjct: 125 PTIGASGAISGVMA 138
>gi|402562676|ref|YP_006605400.1| rhomboid family protein [Bacillus thuringiensis HD-771]
gi|423364243|ref|ZP_17341736.1| hypothetical protein IC1_06213 [Bacillus cereus VD022]
gi|423565413|ref|ZP_17541689.1| hypothetical protein II5_04817 [Bacillus cereus MSX-A1]
gi|401073134|gb|EJP81573.1| hypothetical protein IC1_06213 [Bacillus cereus VD022]
gi|401193992|gb|EJR00990.1| hypothetical protein II5_04817 [Bacillus cereus MSX-A1]
gi|401791328|gb|AFQ17367.1| rhomboid family protein [Bacillus thuringiensis HD-771]
Length = 190
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 44/77 (57%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T+ H + H SN FL+ G +E++ G+F ++ + +G + N S++I+P
Sbjct: 47 WWRVITSLLVHVDLQHFLSNSIFLFALGSSIEKQLGHFSFFILFFISGISGNISSYIIMP 106
Query: 195 KNAVSVGASGAVFGLFA 211
+ GASG +FGL
Sbjct: 107 PEYIHAGASGGIFGLLG 123
>gi|169829737|ref|YP_001699895.1| hypothetical protein Bsph_4306 [Lysinibacillus sphaericus C3-41]
gi|168994225|gb|ACA41765.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
Length = 167
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 4/96 (4%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +A F HA + H+ N F LY+FG +E+ G Y+ +G N +++
Sbjct: 17 WWRVFSAMFLHAGFMHMFFNTFSLYLFGPELEKIAGKARFITIYLVSGIVGNMATYIFYD 76
Query: 195 KNAVSVGASGAVFGLF-AISVLVKMSWDWRKILEVL 229
+ S+GASGA+FG+F A LV + RK + +L
Sbjct: 77 SSYASLGASGAIFGIFGAFGALVYYT---RKTMPML 109
>gi|307707765|ref|ZP_07644244.1| rhomboid family protein [Streptococcus mitis NCTC 12261]
gi|307616263|gb|EFN95457.1| rhomboid family protein [Streptococcus mitis NCTC 12261]
Length = 225
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 60/125 (48%), Gaps = 11/125 (8%)
Query: 140 TAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVS 199
+A F H W H N+F LY G+ VEE G+ + Y+ +G N ++ PK+ ++
Sbjct: 63 SAIFVHIGWEHFIVNMFSLYYLGRQVEEIFGSKKFFFLYLLSGMMGNLFVFVFSPKS-LA 121
Query: 200 VGASGAVFGLFAISVLVK----------MSWDWRKILEVLILGQFVVEKVMEAAQASAGM 249
GAS +++GLFA ++++ + + + V I+G ++ + A +
Sbjct: 122 AGASTSLYGLFAAIIILRYATRNPYIQQLGQSYLTLFVVNIIGSVLIPGISLAGHIGGAV 181
Query: 250 SGTFI 254
G F+
Sbjct: 182 GGAFL 186
>gi|295425277|ref|ZP_06817980.1| rhomboid protease GluP [Lactobacillus amylolyticus DSM 11664]
gi|295065053|gb|EFG55958.1| rhomboid protease GluP [Lactobacillus amylolyticus DSM 11664]
Length = 226
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +TA F H HL SN+ +Y G ++E G++ L Y+ +G N +S
Sbjct: 56 WWRLITAQFLHIGIWHLVSNIVMIYYMGLIIEPMLGHWRFLLIYLLSGVGGNLLSLAFGS 115
Query: 195 KNAVSVGASGAVFGLFA 211
++ GAS A+FGLF
Sbjct: 116 DKSIGAGASTALFGLFG 132
>gi|254784966|ref|YP_003072394.1| rhomboid family protein [Teredinibacter turnerae T7901]
gi|237684168|gb|ACR11432.1| rhomboid family protein [Teredinibacter turnerae T7901]
Length = 186
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 4/91 (4%)
Query: 140 TAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVS 199
TA F H +W HL++NLF L +F L +F L +S +F + W + A
Sbjct: 47 TAPFIHGDWAHLTNNLFGLLVFSLLCMLRGRSFYL-MSSLFIIVVTGVLVWF-FGRPATH 104
Query: 200 VGASGAVFGLFAISVLVKMSWDWRKILEVLI 230
VGASG +FGL+++S + M+W RK + +LI
Sbjct: 105 VGASGWIFGLWSLS--IAMAWFERKFVNILI 133
>gi|421107208|ref|ZP_15567763.1| peptidase, S54 family [Leptospira kirschneri str. H2]
gi|410007727|gb|EKO61413.1| peptidase, S54 family [Leptospira kirschneri str. H2]
Length = 514
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T F HA + HL N F L I VE G + YIF+G + S + P
Sbjct: 374 WWRLLTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLILYIFSGLCGSLASIVWYP 433
Query: 195 KNAVSVGASGAVFGLF-AISVLVKMS 219
N +SVGASGA+FGL+ AI LV M
Sbjct: 434 -NTISVGASGAIFGLYGAILGLVLMD 458
>gi|434378875|ref|YP_006613519.1| rhomboid family protein [Bacillus thuringiensis HD-789]
gi|401877432|gb|AFQ29599.1| rhomboid family protein [Bacillus thuringiensis HD-789]
Length = 190
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 44/77 (57%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T+ H + H SN FL+ G +E++ G+F ++ + +G + N S++I+P
Sbjct: 47 WWRVITSLLVHVDLQHFLSNSIFLFALGSSIEKQLGHFSFFILFFISGISGNISSYIIMP 106
Query: 195 KNAVSVGASGAVFGLFA 211
+ GASG +FGL
Sbjct: 107 PEYIHAGASGGIFGLLG 123
>gi|400293315|ref|ZP_10795191.1| peptidase, S54 family [Actinomyces naeslundii str. Howell 279]
gi|399901556|gb|EJN84435.1| peptidase, S54 family [Actinomyces naeslundii str. Howell 279]
Length = 285
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 59/107 (55%), Gaps = 7/107 (6%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTG-AAANFVSWLILP 194
++F+T AF HAN+ HL N++ L++ G +E G + Y+ + + + WL P
Sbjct: 119 WRFLTTAFLHANYMHLGFNMWALWVLGGALEPVLGRWRFTAVYLLSALGGSTAIYWLSWP 178
Query: 195 K----NAVSVGASGAVFGLFAISVLVKMSW--DWRKILEVLILGQFV 235
+ ++VGASGAVFGLF+ +V+ + D I+ +L++ V
Sbjct: 179 ETEAWTTLTVGASGAVFGLFSTMFVVQRRFGRDTSGIVALLVINGVV 225
>gi|258513680|ref|YP_003189902.1| rhomboid family protein [Desulfotomaculum acetoxidans DSM 771]
gi|257777385|gb|ACV61279.1| Rhomboid family protein [Desulfotomaculum acetoxidans DSM 771]
Length = 218
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 3/103 (2%)
Query: 108 NLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEE 167
NL +Y+ H + S + F +Y F A F H W H+ N+ +L+IFG VE+
Sbjct: 36 NLDVYIMTHGVVPKDFFSDF--SPFTQFYLFTIAIFLHGGWLHVLGNMLYLWIFGDNVED 93
Query: 168 EEGNFGLWLSYIFTGAAANFVSWLILPKNAVS-VGASGAVFGL 209
G+F + Y+ G A L P + + VGASGA+ G+
Sbjct: 94 RMGHFRYLIFYMICGYTATLAHVLADPLSTMPMVGASGAIAGV 136
>gi|227485794|ref|ZP_03916110.1| S54 family peptidase [Anaerococcus lactolyticus ATCC 51172]
gi|227236172|gb|EEI86187.1| S54 family peptidase [Anaerococcus lactolyticus ATCC 51172]
Length = 227
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 67/134 (50%), Gaps = 6/134 (4%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +TA+F H + H+ N++F Y G + E G+F + Y+ +G N +S+ +
Sbjct: 56 WWRLITASFIHIGFFHILFNMYFFYSLGPIFERLFGSFNFLIIYLISGIFGNLLSFALGS 115
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWRKILE------VLILGQFVVEKVMEAAQASAG 248
VS GAS +++G+ +++ + ++ +I+ + I+ VV ++ G
Sbjct: 116 PYTVSAGASTSLYGMLGLAIGLMATYRNDEIIRSFGASFISIVVINVVYSLLAPGVGVYG 175
Query: 249 MSGTFIGGYSVQSI 262
G FI G+ + I
Sbjct: 176 HLGGFIAGFLLAGI 189
>gi|148652124|ref|YP_001279217.1| rhomboid family protein [Psychrobacter sp. PRwf-1]
gi|148571208|gb|ABQ93267.1| Rhomboid family protein [Psychrobacter sp. PRwf-1]
Length = 206
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 64/147 (43%), Gaps = 14/147 (9%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVE----EEEGNFGLWLSYIFTGAAANFVSW 190
WY+F+T F HA+ HL N+F LY FG+ VE + G FG Y+ A S+
Sbjct: 45 WYRFITHGFVHADSTHLLFNMFTLYFFGRAVERFFNQFLGGFGFVAVYLGAIIVAMIPSY 104
Query: 191 LILPKNA--VSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAG 248
L + S+GASG V + S ++ W + ++ + V A
Sbjct: 105 LQHKNDPRYRSLGASGGVSAIL-FSFILMAPWSMLYLFAIVPIPAIVFAIAYVGYSIYAN 163
Query: 249 MSGTFIGGYSVQSINHIAHLSGALFGV 275
G +INH+AHL G FGV
Sbjct: 164 NKGN-------SNINHLAHLWGGAFGV 183
>gi|289193057|ref|YP_003458998.1| Rhomboid family protein [Methanocaldococcus sp. FS406-22]
gi|288939507|gb|ADC70262.1| Rhomboid family protein [Methanocaldococcus sp. FS406-22]
Length = 190
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/161 (28%), Positives = 81/161 (50%), Gaps = 21/161 (13%)
Query: 128 LYHNFPAW--------YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYI 179
LY+ F W +Q +T+ F HAN HL N+F L+IFG +E G+ + ++
Sbjct: 23 LYYYFALWPNLFTDMPWQIITSMFMHANITHLLVNMFVLFIFGTYLENMIGSKKYLIIFL 82
Query: 180 FTGAAAN--FVSWLILPKNA-VSVGASGAVFGLF-AISVLVKMSWDWRKILEVLILGQFV 235
+G N ++++ L + SVGASGA+FG+ A+++L L+V++
Sbjct: 83 LSGIIGNLAYIAYAYLTGDYNPSVGASGAIFGIMGALAILAPH-------LKVVVF-PLP 134
Query: 236 VEKVMEAAQASAGMSGTFIGGYSVQS-INHIAHLSGALFGV 275
+ + A + + YS+++ I HI HL+G + G+
Sbjct: 135 IPVSIRVAVIVFALIDLILLPYSLKTGIAHITHLAGLISGL 175
>gi|407927474|gb|EKG20366.1| Peptidase S54 rhomboid [Macrophomina phaseolina MS6]
Length = 557
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 69/143 (48%), Gaps = 12/143 (8%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+F+ F H H+ N+ G+ +E+ G+ +L Y G N + P
Sbjct: 290 WYRFIVPIFLHGGLIHIGFNMLVQVTVGRDMEKLIGSIRFFLVYFAAGIFGNVLGANYAP 349
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFI 254
+ SVGASGA+FG+ A++ L+ + + W++ L F++ V+ A F+
Sbjct: 350 NGSPSVGASGAIFGIIALT-LLDLLYHWKERLNPKRELLFIMLDVVIA----------FV 398
Query: 255 GGYSVQSINHIAHLSGALFGVFL 277
G + +++ AH+ G + G+ L
Sbjct: 399 LGL-LPGLDNFAHIGGFIMGLGL 420
>gi|153005609|ref|YP_001379934.1| rhomboid family protein [Anaeromyxobacter sp. Fw109-5]
gi|152029182|gb|ABS26950.1| Rhomboid family protein [Anaeromyxobacter sp. Fw109-5]
Length = 369
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 68/127 (53%), Gaps = 13/127 (10%)
Query: 97 SVNGVFWIILLNLGLYVADHVFQVR--SIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSN 154
+ N F+ ++L+ G AD VR +++ ++ P ++ VTA F H W+HL+ N
Sbjct: 30 AANVSFFALVLSRG-DAADPELLVRLGALERSRVWAGEP--WRLVTAGFLHGGWHHLAMN 86
Query: 155 LFFLYIFGKLVEEEEGN---FGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFA 211
L L + G +VE G GL+L+ + +AA+ +L +AV GASG VFG+
Sbjct: 87 LGALLLAGPIVERGLGPARFLGLYLASVVGASAAS-----LLAHDAVVAGASGGVFGVVG 141
Query: 212 ISVLVKM 218
+++++
Sbjct: 142 ALLVLEL 148
>gi|148270778|ref|YP_001245238.1| rhomboid family protein [Thermotoga petrophila RKU-1]
gi|147736322|gb|ABQ47662.1| Rhomboid family protein [Thermotoga petrophila RKU-1]
Length = 222
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 68/142 (47%), Gaps = 24/142 (16%)
Query: 86 DKPEERRKPKKSVNGVFWIILLNLGLYVADHVFQVRSIKS-LYLYHNFPAWYQ------- 137
D R+KP ++ +IL+N+ ++V + + R + +Y Y PA Y
Sbjct: 6 DILPSRKKPYVTMA----LILINVVVFVYELMLNDRELLLFMYRYGLVPARYTVERIKET 61
Query: 138 -------FVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTG---AAANF 187
F+T F H + H+ N++FL+IFG E+E G+FG L Y+ G A A F
Sbjct: 62 LGFSLLPFITHMFLHGGFWHILGNMWFLWIFGDNTEDEMGHFGYTLFYLSAGIFAALAQF 121
Query: 188 VSWLILPKNAVSVGASGAVFGL 209
V L VGASGAV G+
Sbjct: 122 V--FTLHSTTPMVGASGAVSGV 141
>gi|403070966|ref|ZP_10912298.1| hypothetical protein ONdio_15397 [Oceanobacillus sp. Ndiop]
Length = 253
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 79/168 (47%), Gaps = 9/168 (5%)
Query: 98 VNGVFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFF 157
+N + W ++ LGL + ++ + S ++ W + VT F H + H N F
Sbjct: 25 INLILWFVVNFLGLPIGREIYY-WGVGSNFMVAAGEYW-RLVTPIFLHGDLMHALFNSFS 82
Query: 158 LYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFAISVLVK 217
L +FG +E+ G +++ G AN ++L P N +GASGA+FGLF I +
Sbjct: 83 LVLFGPALEQMLGKSKFLIAFFGAGIIANAATYLFAPLNYTHLGASGAIFGLFGIYTFMV 142
Query: 218 M------SWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSV 259
+ + +++ +++ V+ + A + G FIGG+++
Sbjct: 143 LFRKHLIDYSSSQMITTILIISLVMTFLRNNINIYAHIFG-FIGGFAI 189
>gi|328542277|ref|YP_004302386.1| rhomboid family protein [Polymorphum gilvum SL003B-26A1]
gi|326412026|gb|ADZ69089.1| Rhomboid family protein [Polymorphum gilvum SL003B-26A1]
Length = 250
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W F+T F H W HL N++ L+IFG VE+ G L Y+F G AA L P
Sbjct: 65 WTPFLTNIFLHGGWLHLILNMWTLWIFGPAVEDRLGPGRFTLFYLFCGVAAGLAHALANP 124
Query: 195 KNAV-SVGASGAVFGL 209
+ V ++GASGA+ G+
Sbjct: 125 DSVVPALGASGAIAGV 140
>gi|153811275|ref|ZP_01963943.1| hypothetical protein RUMOBE_01667 [Ruminococcus obeum ATCC 29174]
gi|149832773|gb|EDM87857.1| peptidase, S54 family [Ruminococcus obeum ATCC 29174]
Length = 163
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 68/147 (46%), Gaps = 18/147 (12%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+Y+ T F H HL +N+ L++ G +E+ G L Y+ G N +S LI
Sbjct: 20 YYRLFTCMFLHFGIEHLLNNMLVLFVLGSRLEQVIGKIKFLLIYLIGGVFGNVISLLIEL 79
Query: 195 KN---AVSVGASGAVFGLF-AISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMS 250
+ AVS GASGAVF + A+ +V + W LG + +++ A S
Sbjct: 80 RTQDFAVSAGASGAVFAVMGAMIYIVIRNKGW--------LGDLSMRQILVMAAFSLYF- 130
Query: 251 GTFIGGYSVQSINHIAHLSGALFGVFL 277
G++ +++ AH+ G + G FL
Sbjct: 131 -----GFASTGVDNTAHVGGMVSGFFL 152
>gi|30018498|ref|NP_830129.1| hypothetical protein BC0261 [Bacillus cereus ATCC 14579]
gi|218231788|ref|YP_002365076.1| rhomboid family protein [Bacillus cereus B4264]
gi|296501061|ref|YP_003662761.1| hypothetical protein BMB171_C0223 [Bacillus thuringiensis BMB171]
gi|423415876|ref|ZP_17392996.1| hypothetical protein IE1_05180 [Bacillus cereus BAG3O-2]
gi|423422459|ref|ZP_17399490.1| hypothetical protein IE5_00148 [Bacillus cereus BAG3X2-2]
gi|423428330|ref|ZP_17405334.1| hypothetical protein IE7_00146 [Bacillus cereus BAG4O-1]
gi|423644956|ref|ZP_17620572.1| hypothetical protein IK9_04899 [Bacillus cereus VD166]
gi|423646360|ref|ZP_17621930.1| hypothetical protein IKA_00147 [Bacillus cereus VD169]
gi|423653168|ref|ZP_17628467.1| hypothetical protein IKG_00156 [Bacillus cereus VD200]
gi|29894038|gb|AAP07330.1| hypothetical membrane protein (Rhomboid family) [Bacillus cereus
ATCC 14579]
gi|218159745|gb|ACK59737.1| rhomboid family protein [Bacillus cereus B4264]
gi|296322113|gb|ADH05041.1| hypothetical protein BMB171_C0223 [Bacillus thuringiensis BMB171]
gi|401094714|gb|EJQ02787.1| hypothetical protein IE1_05180 [Bacillus cereus BAG3O-2]
gi|401119849|gb|EJQ27655.1| hypothetical protein IE5_00148 [Bacillus cereus BAG3X2-2]
gi|401126652|gb|EJQ34388.1| hypothetical protein IE7_00146 [Bacillus cereus BAG4O-1]
gi|401268290|gb|EJR74340.1| hypothetical protein IK9_04899 [Bacillus cereus VD166]
gi|401287658|gb|EJR93435.1| hypothetical protein IKA_00147 [Bacillus cereus VD169]
gi|401302695|gb|EJS08267.1| hypothetical protein IKG_00156 [Bacillus cereus VD200]
Length = 190
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 44/77 (57%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T+ H + H SN FL+ G +E++ G+F ++ + +G + N S++I+P
Sbjct: 47 WWRVITSLLVHVDLQHFLSNSIFLFALGSSIEKQLGHFSFFILFFLSGISGNISSYIIMP 106
Query: 195 KNAVSVGASGAVFGLFA 211
+ GASG +FGL
Sbjct: 107 LEYIHAGASGGIFGLLG 123
>gi|423433903|ref|ZP_17410884.1| hypothetical protein IE9_00084 [Bacillus cereus BAG4X12-1]
gi|401128053|gb|EJQ35757.1| hypothetical protein IE9_00084 [Bacillus cereus BAG4X12-1]
Length = 190
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 44/77 (57%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T+ H + H SN FL+ G +E++ G+F ++ + +G + N S++I+P
Sbjct: 47 WWRVITSLLVHVDLQHFLSNSIFLFALGSSIEKQLGHFSFFILFFLSGISGNISSYIIMP 106
Query: 195 KNAVSVGASGAVFGLFA 211
+ GASG +FGL
Sbjct: 107 LEYIHAGASGGIFGLLG 123
>gi|336234689|ref|YP_004587305.1| rhomboid protease [Geobacillus thermoglucosidasius C56-YS93]
gi|335361544|gb|AEH47224.1| Rhomboid protease [Geobacillus thermoglucosidasius C56-YS93]
Length = 389
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 63/139 (45%), Gaps = 13/139 (9%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++F T F H + HL N F LY G VE G++ + Y G S+L
Sbjct: 228 WWRFFTPIFLHIGFLHLLMNTFALYYLGMTVERLYGSWRFFFIYFTAGFFGTLGSFLF-- 285
Query: 195 KNAVSVGASGAVFGLFAI-----SVLVKMSWDWRKILEVLILGQFVVEKV---MEAAQAS 246
++S GASGA+FGLF +V + W + + I+G V+ V + +
Sbjct: 286 TASLSAGASGAIFGLFGALLYFGTVYRHLFW---QTIGTNIIGLIVINLVFGMIVPGIDN 342
Query: 247 AGMSGTFIGGYSVQSINHI 265
AG G IGGY I H+
Sbjct: 343 AGHIGGLIGGYLAAGIVHL 361
>gi|424780986|ref|ZP_18207852.1| GlpG membrane protein [Catellicoccus marimammalium M35/04/3]
gi|422842406|gb|EKU26858.1| GlpG membrane protein [Catellicoccus marimammalium M35/04/3]
Length = 200
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +TA F H + HL NL LY G +E G L Y+ G N VS L
Sbjct: 61 WWRLITAMFVHIGFAHLFLNLLTLYFIGPELEFYLGKIRYLLLYLLCGIGGNVVS-LFFD 119
Query: 195 KNAVSVGASGAVFGLFAISVL 215
NA+S G S A+FGLF ++
Sbjct: 120 GNAISAGCSTALFGLFGYYIV 140
>gi|423590488|ref|ZP_17566550.1| hypothetical protein IIE_05875 [Bacillus cereus VD045]
gi|423632145|ref|ZP_17607891.1| hypothetical protein IK5_04994 [Bacillus cereus VD154]
gi|401220470|gb|EJR27104.1| hypothetical protein IIE_05875 [Bacillus cereus VD045]
gi|401262040|gb|EJR68187.1| hypothetical protein IK5_04994 [Bacillus cereus VD154]
Length = 190
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 44/77 (57%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T+ H + H SN FL+ G +E++ G+F ++ + +G + N S++I+P
Sbjct: 47 WWRVITSLLVHVDLQHFLSNSIFLFALGSSIEKQLGHFSFFILFFLSGISGNISSYIIMP 106
Query: 195 KNAVSVGASGAVFGLFA 211
+ GASG +FGL
Sbjct: 107 LEYIHAGASGGIFGLLG 123
>gi|295094297|emb|CBK83388.1| Uncharacterized membrane protein (homolog of Drosophila rhomboid)
[Coprococcus sp. ART55/1]
Length = 379
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Query: 127 YLYHNFPAWY-QFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAA 185
Y Y Y + ++A F H+ ++HL N+F LY+FG VE + G+ + Y +G A
Sbjct: 81 YQYVKLNGEYGRLISAMFLHSGFDHLFGNMFALYMFGSTVERKLGSLRTTIIYFVSGIVA 140
Query: 186 NFVSWLIL-----PKNAVSVGASGAVFGLFAISVLV 216
+S + + S+GASGAVFG+ +V +
Sbjct: 141 GIISMNVYHMTDPDRMHFSIGASGAVFGIICAAVFL 176
>gi|423719255|ref|ZP_17693437.1| rhomboid family protein [Geobacillus thermoglucosidans TNO-09.020]
gi|383368158|gb|EID45433.1| rhomboid family protein [Geobacillus thermoglucosidans TNO-09.020]
Length = 389
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 63/139 (45%), Gaps = 13/139 (9%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++F T F H + HL N F LY G VE G++ + Y G S+L
Sbjct: 228 WWRFFTPIFLHIGFLHLLMNTFALYYLGMTVERLYGSWRFFFIYFTAGFFGTLGSFLF-- 285
Query: 195 KNAVSVGASGAVFGLFAI-----SVLVKMSWDWRKILEVLILGQFVVEKV---MEAAQAS 246
++S GASGA+FGLF +V + W + + I+G V+ V + +
Sbjct: 286 TASLSAGASGAIFGLFGALLYFGTVYRHLFW---QTIGTNIIGLIVINLVFGMIVPGIDN 342
Query: 247 AGMSGTFIGGYSVQSINHI 265
AG G IGGY I H+
Sbjct: 343 AGHIGGLIGGYLAAGIVHL 361
>gi|374297549|ref|YP_005047740.1| hypothetical protein [Clostridium clariflavum DSM 19732]
gi|359827043|gb|AEV69816.1| putative membrane protein [Clostridium clariflavum DSM 19732]
Length = 517
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+++F+T F HA+ HL N L++FG++VE G+ Y G + S++ P
Sbjct: 232 YWRFLTPIFLHADLEHLIMNCLSLFVFGRIVEGMYGHKKFVFIYFMAGIMGSIASFMFSP 291
Query: 195 KNAVSVGASGAVFGLFA 211
+A VGASGA+FGL
Sbjct: 292 HSA--VGASGAIFGLMG 306
>gi|332708448|ref|ZP_08428424.1| uncharacterized rhomboid family membrane protein [Moorea producens
3L]
gi|332352779|gb|EGJ32343.1| uncharacterized rhomboid family membrane protein [Moorea producens
3L]
Length = 230
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 74/163 (45%), Gaps = 26/163 (15%)
Query: 133 PAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLI 192
P +T+ F HA + H+ SN+ FL+IFG +EE+ G + Y+ GA A W
Sbjct: 67 PEPLTLITSQFLHAGFLHVGSNMLFLWIFGNNIEEKLGGIRFLIFYLTCGALAALAQWFF 126
Query: 193 LPKNAV-SVGASGAVFGLFA----------ISVLVKMSWDW--RKILEVLILGQFVVEKV 239
+ + ++GASGA+ G+ I LV + + +I V LG + +++
Sbjct: 127 SALSPIPALGASGAIAGVMGAYIIRFPNAKILTLVPLFIIFFVARIPAVFYLGFWFLQQA 186
Query: 240 ME-----AAQASAGMSGTFIGGYSVQSINHIAHLSGALFGVFL 277
AQA GM G GG I + AH G +FG L
Sbjct: 187 FNGIASLGAQAQVGMEG---GG-----IAYWAHAGGFVFGAIL 221
>gi|365925240|ref|ZP_09448003.1| rhomboid family integral membrane protein [Lactobacillus mali KCTC
3596 = DSM 20444]
gi|420266562|ref|ZP_14769020.1| Integral membrane protein, Rhomboid family [Lactobacillus mali KCTC
3596 = DSM 20444]
gi|394425142|gb|EJE98158.1| Integral membrane protein, Rhomboid family [Lactobacillus mali KCTC
3596 = DSM 20444]
Length = 216
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 65/134 (48%), Gaps = 10/134 (7%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T F H + H+ N+ LY G +E G Y+ +G A N S+ P
Sbjct: 50 WWRLITPMFLHIGFEHIVLNMITLYFVGIQLENILGRGRFLAVYLVSGIAGNLASFAFNP 109
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWD--------WRKILEVLILG-QFVVEKVMEAAQA 245
+A+S GAS A+FGLF I +++ S+ R+ L +++L F ++ A
Sbjct: 110 -DALSAGASTALFGLFGIYLMMGESFSSNPYIRAMGRQFLLLVVLNIMFGFYGSVDLAGH 168
Query: 246 SAGMSGTFIGGYSV 259
G+ G F+ GY V
Sbjct: 169 IGGLVGGFLMGYCV 182
>gi|291520209|emb|CBK75430.1| Uncharacterized membrane protein (homolog of Drosophila rhomboid)
[Butyrivibrio fibrisolvens 16/4]
Length = 191
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWL--- 191
WY+ TA F H NHL++N+ L++ G++ E G Y+ +G A +F+S+
Sbjct: 27 WYRLFTATFMHFGINHLANNMLLLFLLGQMFERAVGPTRYLGIYLGSGLAGSFLSFFYMC 86
Query: 192 ILPKNAVSVGASGAVF 207
++ KN + GASGA+F
Sbjct: 87 LVGKNDIVAGASGAIF 102
>gi|53804405|ref|YP_113959.1| rhomboid family protein [Methylococcus capsulatus str. Bath]
gi|53758166|gb|AAU92457.1| rhomboid family protein [Methylococcus capsulatus str. Bath]
Length = 237
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 20/142 (14%)
Query: 88 PEERRKPKKSVNGVFW-IILLNLGLYVADHVFQVRSIKSLYLYHN-------FPAWY--- 136
P P + V W +++ NL ++ R++++L H FP W
Sbjct: 3 PYRDTIPCRYTPWVTWSLMVCNLAVHGYTQTLPPRALQALLTLHGLVPARYGFPDWAVTA 62
Query: 137 --------QFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFV 188
F+T+ F H +W HL N++ L+IFG +E+ G Y+ G A +
Sbjct: 63 GFPPDEYSPFITSMFLHGSWFHLVGNMWLLWIFGDNIEDRMGGVRFLFFYLLCGVVAAGL 122
Query: 189 SWLILPKNAV-SVGASGAVFGL 209
P++ V +VGASGA+ G+
Sbjct: 123 QVYFNPQSTVPTVGASGAIAGV 144
>gi|407718091|ref|YP_006795496.1| small hydrophobic molecule transporter protein [Leuconostoc
carnosum JB16]
gi|407241847|gb|AFT81497.1| small hydrophobic molecule transporter protein [Leuconostoc
carnosum JB16]
Length = 229
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 7/133 (5%)
Query: 130 HNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVS 189
H++ +++ +T F HA + H+++N+ L+ G L EE G + Y F G N +S
Sbjct: 55 HHYDQYWRLLTPVFLHAGFMHIATNMLTLWFIGPLAEEAFGRWKFLGLYFFGGIFGNIMS 114
Query: 190 WLILPKNAVSVGASGAVFGLFAISVL--VKMSWDWRKILEVLILGQFVVEKVMEAAQASA 247
+L P +SVGAS A+F +F +L V+ D R + I+ FVV ++ ++
Sbjct: 115 YLFAPLT-ISVGASTALFAMFGGLILYAVQFKEDPRIRSQGTIMILFVVLNLVTGFASTD 173
Query: 248 ----GMSGTFIGG 256
G G IGG
Sbjct: 174 IDMWGHIGGLIGG 186
>gi|163848541|ref|YP_001636585.1| rhomboid family protein [Chloroflexus aurantiacus J-10-fl]
gi|222526475|ref|YP_002570946.1| rhomboid family protein [Chloroflexus sp. Y-400-fl]
gi|163669830|gb|ABY36196.1| Rhomboid family protein [Chloroflexus aurantiacus J-10-fl]
gi|222450354|gb|ACM54620.1| Rhomboid family protein [Chloroflexus sp. Y-400-fl]
Length = 232
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 140 TAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAV- 198
T+ F H W HL SN+ LYIFG VE+ G+ + Y+ G AA F L P + +
Sbjct: 67 TSMFMHGGWFHLFSNMLALYIFGDNVEDRMGSQRYLIFYLLCGVAAAFAHILFNPTSPIP 126
Query: 199 SVGASGAVFGLFAISVL 215
+VGASGA+ G+ A +L
Sbjct: 127 TVGASGALSGVLAAYLL 143
>gi|308197805|gb|ADO17919.1| rhomboid protease 1 [Mycobacterium smegmatis]
Length = 296
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 58/99 (58%), Gaps = 2/99 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+Y+ VT+ F H HL N++ LY+ G +E+ G + Y +G + + +++ P
Sbjct: 123 YYRLVTSMFLHYGAMHLLFNMWALYVVGPPLEKWLGLTRFGVLYALSGLGGSVLVYMLSP 182
Query: 195 KNAVSVGASGAVFGLF-AISVLVK-MSWDWRKILEVLIL 231
N+ + GASGA+FGLF AI V+ + ++ D R I ++++
Sbjct: 183 LNSATAGASGAIFGLFGAIFVVARHLNLDVRAIGVIVVI 221
>gi|302039235|ref|YP_003799557.1| putative rhomboid serine protease [Candidatus Nitrospira defluvii]
gi|300607299|emb|CBK43632.1| putative Rhomboid serine protease [Candidatus Nitrospira defluvii]
Length = 234
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 9/109 (8%)
Query: 117 VFQVRSIKSLYLYH--------NFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEE 168
V+Q +I S+ H PA+ +T+ F H +W HL N+ +L++FG +E+
Sbjct: 43 VYQYGAIPSVVFGHAMLPPEVATVPAFATMLTSMFLHGSWMHLIGNMLYLWVFGNNIEDI 102
Query: 169 EGNFGLWLSYIFTGAAANFVSWLILPKNAVS-VGASGAVFGLFAISVLV 216
G+ L Y+ G A L P + V VGASGA+ G+ +L+
Sbjct: 103 MGHARFILFYVVCGVLAALSHALTDPTSTVPMVGASGAISGILGAYLLL 151
>gi|410657229|ref|YP_006909600.1| GlpG protein (membrane protein of glp regulon) [Dehalobacter sp.
DCA]
gi|410660265|ref|YP_006912636.1| Rhomboid-like protein [Dehalobacter sp. CF]
gi|409019584|gb|AFV01615.1| GlpG protein (membrane protein of glp regulon) [Dehalobacter sp.
DCA]
gi|409022621|gb|AFV04651.1| Rhomboid-like protein [Dehalobacter sp. CF]
Length = 203
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 47/77 (61%), Gaps = 2/77 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+++ +T+ F H + HL N++ L + GKL E G+ L Y+F+G A + +S+L P
Sbjct: 61 YWRLLTSMFIHIGFTHLLFNVYALIVLGKLAERLFGHGRFLLIYLFSGLAGSLISYLWGP 120
Query: 195 KNAVSVGASGAVFGLFA 211
+ +S GASGA+FGL
Sbjct: 121 E--LSAGASGAIFGLLG 135
>gi|331268929|ref|YP_004395421.1| rhomboid family membrane protein [Clostridium botulinum BKT015925]
gi|329125479|gb|AEB75424.1| rhomboid family membrane protein [Clostridium botulinum BKT015925]
Length = 335
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 72/145 (49%), Gaps = 19/145 (13%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+Y+ +T F H HL N++ L G ++E+ G + Y+ G + +
Sbjct: 197 YYRLITCMFLHGGLMHLILNMYALKALGPMIEKSYGKMKYVIIYLVGGLIS--SISSYIF 254
Query: 195 KNAVSVGASGAVFGLF-AISVL-VKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGT 252
N VS+GASGA+F L AI VL +KM + G+ V++ V+ S +
Sbjct: 255 SNGVSIGASGAIFSLLGAILVLTIKMRS---------VAGKDVIKNVV-----SVIVINI 300
Query: 253 FIGGYSVQSINHIAHLSGALFGVFL 277
FI G ++ +I++ AH+ G L GVFL
Sbjct: 301 FI-GLAIPNIDNFAHIGGLLGGVFL 324
>gi|419760008|ref|ZP_14286293.1| integral membrane protein, Rhomboid family [Thermosipho africanus
H17ap60334]
gi|407515047|gb|EKF49833.1| integral membrane protein, Rhomboid family [Thermosipho africanus
H17ap60334]
Length = 223
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ VT+ F H + HL N++ L+ G++VE G Y +G N + I
Sbjct: 50 WFRIVTSMFVHGGFIHLIFNMYALFFLGRIVENVYGTEKFLTFYFLSGIVGNLAT-QIFY 108
Query: 195 KNAVSVGASGAVFGLFAI 212
N+ SVGASGA+FGL +
Sbjct: 109 YNSFSVGASGAIFGLIGV 126
>gi|309805213|ref|ZP_07699265.1| peptidase, S54 family [Lactobacillus iners LactinV 09V1-c]
gi|308165447|gb|EFO67678.1| peptidase, S54 family [Lactobacillus iners LactinV 09V1-c]
Length = 232
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+++ TA F HA + H+ N+ +Y FG +E+ G+ Y+ +G N +S+ +
Sbjct: 62 FWRLFTAQFIHAGFFHIICNIVMIYFFGMYLEQFLGHIRYLTIYLLSGVGGNLLSFALGQ 121
Query: 195 KNAVSVGASGAVFGL 209
N +S GAS AVFGL
Sbjct: 122 DNVISCGASTAVFGL 136
>gi|217077443|ref|YP_002335161.1| integral membrane protein, Rhomboid family [Thermosipho africanus
TCF52B]
gi|217037298|gb|ACJ75820.1| integral membrane protein, Rhomboid family [Thermosipho africanus
TCF52B]
Length = 223
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ VT+ F H + HL N++ L+ G++VE G Y +G N + I
Sbjct: 50 WFRIVTSMFVHGGFIHLIFNMYALFFLGRIVENVYGTEKFLTFYFLSGIVGNLATQ-IFY 108
Query: 195 KNAVSVGASGAVFGLFAI 212
N+ SVGASGA+FGL +
Sbjct: 109 YNSFSVGASGAIFGLIGV 126
>gi|421128003|ref|ZP_15588221.1| peptidase, S54 family [Leptospira interrogans serovar Grippotyphosa
str. 2006006986]
gi|421133348|ref|ZP_15593496.1| peptidase, S54 family [Leptospira interrogans serovar Grippotyphosa
str. Andaman]
gi|410022356|gb|EKO89133.1| peptidase, S54 family [Leptospira interrogans serovar Grippotyphosa
str. Andaman]
gi|410434470|gb|EKP83608.1| peptidase, S54 family [Leptospira interrogans serovar Grippotyphosa
str. 2006006986]
Length = 514
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T F HA + HL N F L I VE G + YIF+G + S + P
Sbjct: 374 WWRLLTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLILYIFSGLCGSLASIVWYP 433
Query: 195 KNAVSVGASGAVFGLF-AISVLVKMS 219
N +SVGASGA+FGL+ AI LV M
Sbjct: 434 -NTISVGASGAIFGLYGAILGLVLMD 458
>gi|325912121|ref|ZP_08174519.1| peptidase, S54 family [Lactobacillus iners UPII 143-D]
gi|325476071|gb|EGC79239.1| peptidase, S54 family [Lactobacillus iners UPII 143-D]
Length = 232
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+++ TA F HA + H+ N+ +Y FG +E+ G+ Y+ +G N +S+ +
Sbjct: 62 FWRLFTAQFIHAGFFHIICNIVMIYFFGMYLEQFLGHIRYLTIYLLSGVGGNLLSFALGQ 121
Query: 195 KNAVSVGASGAVFGL 209
N +S GAS AVFGL
Sbjct: 122 DNVISCGASTAVFGL 136
>gi|115459992|ref|NP_001053596.1| Os04g0569300 [Oryza sativa Japonica Group]
gi|38344377|emb|CAE02252.2| OSJNBb0032E06.11 [Oryza sativa Japonica Group]
gi|113565167|dbj|BAF15510.1| Os04g0569300 [Oryza sativa Japonica Group]
gi|215704480|dbj|BAG93914.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 342
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 56/93 (60%), Gaps = 2/93 (2%)
Query: 130 HNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVS 189
H AW + T+ + HA HL++N+ L I G +E++ G + + L Y+ +G + +S
Sbjct: 131 HGNQAW-RLETSTWLHAGLIHLAANMISLLIIGIRLEQQFGFWKVGLVYLVSGFGGSVLS 189
Query: 190 WLILPKNAVSVGASGAVFGLFAISVLVKMSWDW 222
L + +N ++VGASGA+FGL ++L ++ +W
Sbjct: 190 VLFISRNGITVGASGALFGLLG-AMLSELITNW 221
>gi|154246103|ref|YP_001417061.1| rhomboid family protein [Xanthobacter autotrophicus Py2]
gi|154160188|gb|ABS67404.1| Rhomboid family protein [Xanthobacter autotrophicus Py2]
Length = 243
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 129 YHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFV 188
Y PA + VT F H W HL N+ FL++FG VE+ G+ Y+ GA A
Sbjct: 67 YARIPAPFSLVTYMFLHGGWLHLIGNMTFLFVFGDNVEDALGHVRFLAFYLLCGALAASA 126
Query: 189 SWLILPKN-AVSVGASGAVFGLFA 211
L P + A VGASGAV G+ A
Sbjct: 127 HVLANPASEAPLVGASGAVAGVIA 150
>gi|418701499|ref|ZP_13262424.1| peptidase, S54 family [Leptospira interrogans serovar Bataviae str.
L1111]
gi|410759581|gb|EKR25793.1| peptidase, S54 family [Leptospira interrogans serovar Bataviae str.
L1111]
Length = 514
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T F HA + HL N F L I VE G + YIF+G + S + P
Sbjct: 374 WWRLLTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLILYIFSGLCGSLASIVWYP 433
Query: 195 KNAVSVGASGAVFGLF-AISVLVKMS 219
N +SVGASGA+FGL+ AI LV M
Sbjct: 434 -NTISVGASGAIFGLYGAILGLVLMD 458
>gi|229041135|ref|ZP_04189894.1| Rhomboid [Bacillus cereus AH676]
gi|228727197|gb|EEL78395.1| Rhomboid [Bacillus cereus AH676]
Length = 179
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 44/77 (57%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T+ H + H SN FL+ G +E++ G+F ++ + +G + N S++I+P
Sbjct: 47 WWRVITSLLVHVDLQHFLSNSIFLFALGSSIEKQLGHFSFFILFFLSGISGNISSYIIMP 106
Query: 195 KNAVSVGASGAVFGLFA 211
+ GASG +FGL
Sbjct: 107 LEYIHAGASGGIFGLLG 123
>gi|421609383|ref|ZP_16050579.1| Peptidase S54, rhomboid [Rhodopirellula baltica SH28]
gi|408499880|gb|EKK04343.1| Peptidase S54, rhomboid [Rhodopirellula baltica SH28]
Length = 410
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 60/116 (51%), Gaps = 4/116 (3%)
Query: 104 IILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGK 163
II N GL++ + + L L + +Q+VT+AF HA+W+HL N+ FL+ FG
Sbjct: 21 IIAANTGLFLLTGMGEYGDHDWLILEFDRINPFQWVTSAFMHASWSHLIGNMVFLWCFGL 80
Query: 164 LVEEEEGNFGLWLSY----IFTGAAANFVSWLILPKNAVSVGASGAVFGLFAISVL 215
++E + G L Y + GA ++ ++GASG +F L A++V+
Sbjct: 81 VIEGKLGWQRFSLLYLGLALADGAIGQIPMFMFSDGQGGALGASGVIFALLAVAVI 136
>gi|312872929|ref|ZP_07732989.1| peptidase, S54 family [Lactobacillus iners LEAF 2062A-h1]
gi|311091451|gb|EFQ49835.1| peptidase, S54 family [Lactobacillus iners LEAF 2062A-h1]
Length = 232
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+++ TA F HA + H+ N+ +Y FG +E+ G+ Y+ +G N +S+ +
Sbjct: 62 FWRLFTAQFIHAGFFHIICNIVMIYFFGMYLEQFLGHIRYLTIYLLSGVGGNLLSFALGQ 121
Query: 195 KNAVSVGASGAVFGL 209
N +S GAS AVFGL
Sbjct: 122 DNVISCGASTAVFGL 136
>gi|158311990|ref|YP_001504498.1| rhomboid family protein [Frankia sp. EAN1pec]
gi|158107395|gb|ABW09592.1| Rhomboid family protein [Frankia sp. EAN1pec]
Length = 381
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 2/94 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+Y+ +TAAF H N+ H+ NL+ L++ G +E G L ++ N +S+L+
Sbjct: 215 YYRLLTAAFLHVNYLHVLVNLYALFVLGYQLEAILGRLRLVALFVACAVGGNTLSYLVNG 274
Query: 195 KNAVSVGASGAVFGLFAISVLV--KMSWDWRKIL 226
+ SVGAS A+FG F ++ ++ D +IL
Sbjct: 275 VSVNSVGASTAIFGFFGAYYVIARRLRADTTQIL 308
>gi|421131221|ref|ZP_15591405.1| peptidase, S54 family [Leptospira kirschneri str. 2008720114]
gi|410357472|gb|EKP04727.1| peptidase, S54 family [Leptospira kirschneri str. 2008720114]
Length = 447
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T F HA + HL N F L I VE G + YIF+G + S + P
Sbjct: 307 WWRLLTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLILYIFSGLCGSLASIVWYP 366
Query: 195 KNAVSVGASGAVFGLF-AISVLVKMS 219
N +SVGASGA+FGL+ AI LV M
Sbjct: 367 -NTISVGASGAIFGLYGAILGLVLMD 391
>gi|418689558|ref|ZP_13250679.1| peptidase, S54 family [Leptospira interrogans str. FPW2026]
gi|418729718|ref|ZP_13288265.1| peptidase, S54 family [Leptospira interrogans str. UI 12758]
gi|400361237|gb|EJP17204.1| peptidase, S54 family [Leptospira interrogans str. FPW2026]
gi|410775896|gb|EKR55887.1| peptidase, S54 family [Leptospira interrogans str. UI 12758]
Length = 514
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T F HA + HL N F L I VE G + YIF+G + S + P
Sbjct: 374 WWRLLTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLILYIFSGLCGSLASIVWYP 433
Query: 195 KNAVSVGASGAVFGLF-AISVLVKMS 219
N +SVGASGA+FGL+ AI LV M
Sbjct: 434 -NTISVGASGAIFGLYGAILGLVLMD 458
>gi|417772121|ref|ZP_12420011.1| peptidase, S54 family [Leptospira interrogans serovar Pomona str.
Pomona]
gi|418680537|ref|ZP_13241786.1| peptidase, S54 family [Leptospira interrogans serovar Pomona str.
Kennewicki LC82-25]
gi|418703562|ref|ZP_13264446.1| peptidase, S54 family [Leptospira interrogans serovar Hebdomadis
str. R499]
gi|418715819|ref|ZP_13275930.1| peptidase, S54 family [Leptospira interrogans str. UI 08452]
gi|421118289|ref|ZP_15578634.1| peptidase, S54 family [Leptospira interrogans serovar Canicola str.
Fiocruz LV133]
gi|400327895|gb|EJO80135.1| peptidase, S54 family [Leptospira interrogans serovar Pomona str.
Kennewicki LC82-25]
gi|409946078|gb|EKN96092.1| peptidase, S54 family [Leptospira interrogans serovar Pomona str.
Pomona]
gi|410010137|gb|EKO68283.1| peptidase, S54 family [Leptospira interrogans serovar Canicola str.
Fiocruz LV133]
gi|410766698|gb|EKR37381.1| peptidase, S54 family [Leptospira interrogans serovar Hebdomadis
str. R499]
gi|410788320|gb|EKR82042.1| peptidase, S54 family [Leptospira interrogans str. UI 08452]
gi|455668108|gb|EMF33357.1| peptidase, S54 family [Leptospira interrogans serovar Pomona str.
Fox 32256]
Length = 514
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T F HA + HL N F L I VE G + YIF+G + S + P
Sbjct: 374 WWRLLTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLILYIFSGLCGSLASIVWYP 433
Query: 195 KNAVSVGASGAVFGLF-AISVLVKMS 219
N +SVGASGA+FGL+ AI LV M
Sbjct: 434 -NTISVGASGAIFGLYGAILGLVLMD 458
>gi|444387994|ref|ZP_21185988.1| peptidase, S54 family [Streptococcus pneumoniae PCS125219]
gi|444391207|ref|ZP_21189120.1| peptidase, S54 family [Streptococcus pneumoniae PCS70012]
gi|444393800|ref|ZP_21191421.1| peptidase, S54 family [Streptococcus pneumoniae PCS81218]
gi|444251168|gb|ELU57641.1| peptidase, S54 family [Streptococcus pneumoniae PCS125219]
gi|444255365|gb|ELU61721.1| peptidase, S54 family [Streptococcus pneumoniae PCS70012]
gi|444255622|gb|ELU61969.1| peptidase, S54 family [Streptococcus pneumoniae PCS81218]
Length = 225
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 63/129 (48%), Gaps = 11/129 (8%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
++ ++A F H W H N+ LY G+ VEE G+ + Y+ +G N ++ PK
Sbjct: 59 WRLLSAIFVHIGWEHFIVNMLSLYYLGRQVEEIFGSKQFFFLYLLSGMMGNLFVFVFSPK 118
Query: 196 NAVSVGASGAVFGLFAISVLVK----------MSWDWRKILEVLILGQFVVEKVMEAAQA 245
+ ++VGAS +++GLFA ++++ + + + V I+G ++ + A
Sbjct: 119 S-LAVGASTSLYGLFAAIIVLRYATRNPYIQQLGQSYLTLFVVNIIGSVLIPGISLAGHI 177
Query: 246 SAGMSGTFI 254
+ G F+
Sbjct: 178 GGAVGGAFL 186
>gi|417784544|ref|ZP_12432250.1| peptidase, S54 family [Leptospira interrogans str. C10069]
gi|409952361|gb|EKO06874.1| peptidase, S54 family [Leptospira interrogans str. C10069]
Length = 514
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T F HA + HL N F L I VE G + YIF+G + S + P
Sbjct: 374 WWRLLTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLILYIFSGLCGSLASIVWYP 433
Query: 195 KNAVSVGASGAVFGLF-AISVLVKMS 219
N +SVGASGA+FGL+ AI LV M
Sbjct: 434 -NTISVGASGAIFGLYGAILGLVLMD 458
>gi|126730928|ref|ZP_01746737.1| rhomboid family protein [Sagittula stellata E-37]
gi|126708644|gb|EBA07701.1| rhomboid family protein [Sagittula stellata E-37]
Length = 247
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 136 YQ-FVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
YQ +T+ F H W H+ N+ +LYIFG +E+ G+ L Y+ G A + + P
Sbjct: 57 YQGLLTSMFLHGGWMHIIGNMLYLYIFGDNLEDRMGHVPFLLFYLAAGLGAGLIHYASAP 116
Query: 195 -KNAVSVGASGAVFGLFAISVLV 216
N +VGASGA+ G+ +L+
Sbjct: 117 YSNVPTVGASGAIAGVMGGYLLL 139
>gi|315653611|ref|ZP_07906531.1| membrane-associated serine protease [Lactobacillus iners ATCC
55195]
gi|315488973|gb|EFU78615.1| membrane-associated serine protease [Lactobacillus iners ATCC
55195]
Length = 232
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+++ TA F HA + H+ N+ +Y FG +E+ G+ Y+ +G N +S+ +
Sbjct: 62 FWRLFTAQFIHAGFFHIICNIVMIYFFGMYLEQFLGHIRYLTIYLLSGVGGNLLSFALGQ 121
Query: 195 KNAVSVGASGAVFGL 209
N +S GAS AVFGL
Sbjct: 122 DNVISCGASTAVFGL 136
>gi|83941180|ref|ZP_00953642.1| rhomboid family protein [Sulfitobacter sp. EE-36]
gi|83847000|gb|EAP84875.1| rhomboid family protein [Sulfitobacter sp. EE-36]
Length = 247
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 139 VTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAV 198
+T+ F H W HL+ N+ FLYIFG +E+E G+ L Y+ G + + P + V
Sbjct: 65 LTSMFLHGGWMHLAGNMLFLYIFGDNIEDEMGHGAYLLFYLACGLLSALAHVISAPYSPV 124
Query: 199 -SVGASGAVFGLFAISVLV 216
+VGASGA+ G+ +L+
Sbjct: 125 PTVGASGAIAGVMGGYLLL 143
>gi|357019099|ref|ZP_09081357.1| rhomboid family protein [Mycobacterium thermoresistibile ATCC
19527]
gi|356481160|gb|EHI14270.1| rhomboid family protein [Mycobacterium thermoresistibile ATCC
19527]
Length = 281
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 55/99 (55%), Gaps = 4/99 (4%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+Y+ VT+AF H HL N+F LY+ G +E G L Y + + + +L L
Sbjct: 113 YYRLVTSAFLHFGLMHLLFNMFALYVIGGPLEAALGRLRFGLLYALSALGGSVLVYL-LA 171
Query: 195 KNAVSVGASGAVFGLFAISVLV--KMSWDWRKILEVLIL 231
N + GASGAVFGLFA + +V +++ D R + ++++
Sbjct: 172 MNP-TAGASGAVFGLFAATYVVAKRLNLDVRFVTGLIVV 209
>gi|339503573|ref|YP_004690993.1| rhomboid protease-like protein [Roseobacter litoralis Och 149]
gi|338757566|gb|AEI94030.1| rhomboid protease-like protein [Roseobacter litoralis Och 149]
Length = 247
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 74/141 (52%), Gaps = 12/141 (8%)
Query: 88 PEERRKPKKSVNGVFWIILL-NLGLYVA--DHVFQVRSIKSLYL-YHNFPA-------WY 136
P P + V ++++ N+G++++ + VR++ + +L + PA +Y
Sbjct: 3 PIRDHNPSGRIPYVTYMLMAANIGIFLSYFGIMEDVRAMNAFWLQWAMIPARLSQGDGYY 62
Query: 137 QFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKN 196
+++ F H + HL+ N+ FL+IFG +E+E G+ L Y+ G A+ + + P
Sbjct: 63 TLISSMFLHGGFFHLAGNMLFLWIFGDNIEDELGHGKFILFYLCCGVIASLAQYAVDPMA 122
Query: 197 AV-SVGASGAVFGLFAISVLV 216
+ +VGASGA+ G+ +L+
Sbjct: 123 MIPTVGASGAIAGVMGGYLLL 143
>gi|337749638|ref|YP_004643800.1| rhomboid family protein [Paenibacillus mucilaginosus KNP414]
gi|379722538|ref|YP_005314669.1| rhomboid family protein [Paenibacillus mucilaginosus 3016]
gi|386725303|ref|YP_006191629.1| rhomboid family protein [Paenibacillus mucilaginosus K02]
gi|336300827|gb|AEI43930.1| rhomboid family protein [Paenibacillus mucilaginosus KNP414]
gi|378571210|gb|AFC31520.1| rhomboid family protein [Paenibacillus mucilaginosus 3016]
gi|384092428|gb|AFH63864.1| rhomboid family protein [Paenibacillus mucilaginosus K02]
Length = 214
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 64/130 (49%), Gaps = 7/130 (5%)
Query: 133 PAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLI 192
P +++VTA F H + HL N F LY+F +E G + L Y+ G A N S +
Sbjct: 58 PEPWRYVTAIFIHIGFQHLLFNSFALYVFAAPLERLLGKWKYLLFYLLCGIAGNLASAWL 117
Query: 193 LPKNAVSVGASGAVFGLFA----ISVLVKMSWDW--RKILEVLILGQFVVEKVMEAAQAS 246
+ GASGA++G++A +SV + D+ ++ + +++ F+ V+
Sbjct: 118 HGDYYIGAGASGAIYGVYAAFLYLSVFRRDLIDYATKQTVRTIVIVGFIYSIVVPRVDMY 177
Query: 247 AGMSGTFIGG 256
A G F+GG
Sbjct: 178 A-HGGGFVGG 186
>gi|126657473|ref|ZP_01728629.1| hypothetical protein CY0110_29484 [Cyanothece sp. CCY0110]
gi|126621177|gb|EAZ91890.1| hypothetical protein CY0110_29484 [Cyanothece sp. CCY0110]
Length = 165
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 55/102 (53%), Gaps = 4/102 (3%)
Query: 137 QFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKN 196
+T+ F HA + H++ N+ FL+IFG VE++ G+ L Y+ G A W P +
Sbjct: 3 DLITSQFLHAGFLHIAGNMLFLWIFGNNVEDKLGHVKYLLFYLTCGVLAGLSQWYFAPYS 62
Query: 197 AV-SVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVE 237
+ S+GASGA+ G+ +L + ++L ++ LG F+
Sbjct: 63 EIPSLGASGAIAGVMGAYIL---RFPQAQVLTLIPLGIFITT 101
>gi|456824612|gb|EMF73038.1| peptidase, S54 family [Leptospira interrogans serovar Canicola str.
LT1962]
Length = 226
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T F HA + HL N F L I VE G + YIF+G + S + P
Sbjct: 86 WWRLLTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLILYIFSGLCGSLASIVWYP 145
Query: 195 KNAVSVGASGAVFGLF-AISVLVKMS 219
N +SVGASGA+FGL+ AI LV M
Sbjct: 146 -NTISVGASGAIFGLYGAILGLVLMD 170
>gi|72161430|ref|YP_289087.1| hypothetical protein Tfu_1026 [Thermobifida fusca YX]
gi|71915162|gb|AAZ55064.1| conserved hypothetical protein [Thermobifida fusca YX]
Length = 259
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 139 VTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANF-VSWLILPKNA 197
VT+ F HA+ HL+ N+ +L++FG VE+ G F L Y+ TG AA + S P
Sbjct: 97 VTSMFLHADAFHLTGNMVYLFVFGPCVEDRLGRFRYPLIYLGTGVAACYGFSLAEGPAAV 156
Query: 198 VSVGASGAVFGLFAISVLVK 217
VGASGA+ G+ ++V+
Sbjct: 157 PMVGASGAISGVLGTYLVVQ 176
>gi|406885514|gb|EKD32686.1| hypothetical protein ACD_77C00001G0004 [uncultured bacterium]
Length = 226
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/179 (32%), Positives = 78/179 (43%), Gaps = 56/179 (31%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
YQFVT F H N+ HL N++ L IFG ++E+ G+ ++ Y+ TG A + L+L
Sbjct: 55 YQFVTHMFMHGNFIHLFFNMYSLIIFGVVLEQVWGSKKFFIYYMVTGLGAAALHSLVLYI 114
Query: 196 NAVS------------------------VGASGAVFG-------LFAISVL------VKM 218
+ S VGASGAV+G LF +VL V +
Sbjct: 115 DVASQMNALEAGSAVAKANIEAIMFTPTVGASGAVYGVLLAYGMLFPNNVLQLIFPPVAL 174
Query: 219 SWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQSINHIAHLSGALFGVFL 277
W VLI G A + G+S T GG +I H AHL G LFG FL
Sbjct: 175 KAKWF----VLIFG---------AIELVLGVSNT--GG----NIAHFAHLGGMLFGYFL 214
>gi|430742280|ref|YP_007201409.1| hypothetical protein Sinac_1327 [Singulisphaera acidiphila DSM
18658]
gi|430014000|gb|AGA25714.1| putative membrane protein [Singulisphaera acidiphila DSM 18658]
Length = 257
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 74/158 (46%), Gaps = 24/158 (15%)
Query: 132 FPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWL 191
FP W T+ F HA+ HL+ N+ +L+IFG VEE G + Y+ G +
Sbjct: 85 FPIWLTIFTSMFLHASPLHLAGNMLYLWIFGDNVEEVLGTIRYLIVYLACGFVGTVLQIA 144
Query: 192 ILPKNAV-SVGASGAVFGLFAISVLVKMSWDWRKILEVL------------ILGQFVVEK 238
+ + + ++GASGA+ G+ + V+ W + + VL ++G ++V +
Sbjct: 145 MNQDSLIPTLGASGAIAGIMGMYVV----WFPQNQVRVLVFRFITQMPALYVIGFWIVLQ 200
Query: 239 VMEAAQASAGMSGTFIGGYSVQSINHIAHLSGALFGVF 276
++E SAG G + ++AH+ GA G+
Sbjct: 201 IIEGV-GSAGKIG------ETGGVAYLAHIGGAATGIL 231
>gi|309808584|ref|ZP_07702478.1| peptidase, S54 family [Lactobacillus iners LactinV 01V1-a]
gi|308168180|gb|EFO70304.1| peptidase, S54 family [Lactobacillus iners LactinV 01V1-a]
Length = 182
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+++ TA F HA + H+ N+ +Y FG +E+ G+ Y+ +G N +S+ +
Sbjct: 12 FWRLFTAQFIHAGFFHIICNIVMIYFFGMYLEQFLGHIRYLTIYLLSGVGGNLLSFALGQ 71
Query: 195 KNAVSVGASGAVFGL 209
N +S GAS AVFGL
Sbjct: 72 DNVISCGASTAVFGL 86
>gi|299755411|ref|XP_001828645.2| hypothetical protein CC1G_10517 [Coprinopsis cinerea okayama7#130]
gi|298411214|gb|EAU93149.2| hypothetical protein CC1G_10517 [Coprinopsis cinerea okayama7#130]
Length = 502
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 67/146 (45%), Gaps = 16/146 (10%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++F+TA F HA HL N+ + +E + G+ G + Y G N +
Sbjct: 283 WFRFITAIFLHAGIIHLLLNMLAQFTLSAQIERDMGSTGFLIVYFAAGIFGNVLGGNFSL 342
Query: 195 KNAVSVGASGAVFGLFAIS---VLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSG 251
SVGASGA+FG A++ +L + +R + +V + V + + G++
Sbjct: 343 VGIPSVGASGAIFGTLAVTWVDLLAHWKYQYRPVRKVGL--------VFMTIELAIGVAI 394
Query: 252 TFIGGYSVQSINHIAHLSGALFGVFL 277
FI +++ AHL G L G+ +
Sbjct: 395 GFI-----PYVDNFAHLGGFLMGLLV 415
>gi|15606530|ref|NP_213910.1| hypothetical protein aq_1327 [Aquifex aeolicus VF5]
gi|2983747|gb|AAC07308.1| hypothetical protein aq_1327 [Aquifex aeolicus VF5]
Length = 227
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAA----NFVSWL 191
Y +T F H +W H+ N++FL++FG VE++ G F + YI G A F+S
Sbjct: 68 YTLLTHMFLHGSWGHIIGNMWFLWVFGDNVEDKLGKFRYIIFYILCGLGAALTQTFISLA 127
Query: 192 ILPKNAVSVGASGAVFGLFA 211
N VGASGA+ G+
Sbjct: 128 FGGANVPMVGASGAISGVLG 147
>gi|373859031|ref|ZP_09601763.1| Rhomboid family protein [Bacillus sp. 1NLA3E]
gi|372451122|gb|EHP24601.1| Rhomboid family protein [Bacillus sp. 1NLA3E]
Length = 522
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 66/143 (46%), Gaps = 16/143 (11%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++F+T F H + HL N LY G LVE GNF L Y+F G S+
Sbjct: 227 WWRFLTPIFIHIGFLHLIMNSIALYYIGPLVERIYGNFRFILIYLFAGFTGVLASFAFSA 286
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFI 254
+S GASGA+FG F + + + + + + VV G++ F
Sbjct: 287 N--LSAGASGAIFGCFGALLYFGLIYP-KLFFRTMGMNILVV----------IGLNLAF- 332
Query: 255 GGYSVQSINHIAHLSGALFGVFL 277
G+S+Q I++ H+ G L G FL
Sbjct: 333 -GFSMQGIDNAGHI-GGLIGGFL 353
>gi|326692732|ref|ZP_08229737.1| small hydrophobic molecule transporter protein, putative
[Leuconostoc argentinum KCTC 3773]
Length = 229
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+++ +T F HA W H+ +N+ L+ G L E G+ Y+F G N +S+L P
Sbjct: 60 YWRLLTPIFLHAGWLHIITNMLTLWFIGPLAEAVFGHRKFLGLYLFGGVVGNIMSYLFAP 119
Query: 195 KNAVSVGASGAVFGLFA 211
VSVGAS A+FGLF
Sbjct: 120 LT-VSVGASTALFGLFG 135
>gi|45658531|ref|YP_002617.1| hypothetical protein LIC12696 [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|421085386|ref|ZP_15546239.1| peptidase, S54 family [Leptospira santarosai str. HAI1594]
gi|421103683|ref|ZP_15564280.1| peptidase, S54 family [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|45601774|gb|AAS71254.1| conserved hypothetical protein [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|410366646|gb|EKP22037.1| peptidase, S54 family [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|410432022|gb|EKP76380.1| peptidase, S54 family [Leptospira santarosai str. HAI1594]
gi|456984467|gb|EMG20522.1| peptidase, S54 family [Leptospira interrogans serovar Copenhageni
str. LT2050]
Length = 239
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T F HA + HL N F L I VE G + YIF+G + S + P
Sbjct: 99 WWRLLTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLILYIFSGLCGSLASIVWYP 158
Query: 195 KNAVSVGASGAVFGLF-AISVLVKMS 219
N +SVGASGA+FGL+ AI LV M
Sbjct: 159 -NTISVGASGAIFGLYGAILGLVLMD 183
>gi|325921761|ref|ZP_08183583.1| uncharacterized membrane protein [Xanthomonas gardneri ATCC 19865]
gi|325547748|gb|EGD18780.1| uncharacterized membrane protein [Xanthomonas gardneri ATCC 19865]
Length = 202
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 70/155 (45%), Gaps = 34/155 (21%)
Query: 137 QFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNF-GLWLSYIFTGAAANFVSWLILPK 195
+ VT F HA+ HL N+ L+ FG+ +E+ G L+Y +A VS ILP
Sbjct: 42 RLVTYGFIHADLGHLVFNMITLFFFGRYIEDVMTRLSGSVLTYPLFYLSALVVS--ILPS 99
Query: 196 --------NAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASA 247
N +S+GASGAV + +L+K W IL + I A A
Sbjct: 100 YLKNQKNPNYLSLGASGAVSAVLFAFILLK---PWTIILVLFI-------------PAPA 143
Query: 248 GMSGTFIGGYSV-------QSINHIAHLSGALFGV 275
+ F GYS+ INH AHL+GA FGV
Sbjct: 144 IIYAVFYVGYSLWMDRRGGDRINHSAHLAGAAFGV 178
>gi|21242203|ref|NP_641785.1| hypothetical protein XAC1451 [Xanthomonas axonopodis pv. citri str.
306]
gi|21107623|gb|AAM36321.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
str. 306]
Length = 224
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 70/155 (45%), Gaps = 34/155 (21%)
Query: 137 QFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNF-GLWLSYIFTGAAANFVSWLILPK 195
+ VT F HA+ HL N+ L+ FG+++E G L+Y AA VS ILP
Sbjct: 64 RLVTYGFIHADLGHLIFNMITLFFFGRVIENVMAQLTGSVLTYPLFYLAALVVS--ILPS 121
Query: 196 --------NAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASA 247
N +S+GASGAV + +L++ W IL + I A A
Sbjct: 122 YLKNQKNPNYLSLGASGAVSAVLFAFILLQ---PWTIILVLFI-------------PAPA 165
Query: 248 GMSGTFIGGYSV-------QSINHIAHLSGALFGV 275
+ F GYS+ INH AHL+GA FGV
Sbjct: 166 ILYAVFYVGYSLWMDRRGGDRINHSAHLAGAAFGV 200
>gi|188589117|ref|YP_001920138.1| rhomboid family protein [Clostridium botulinum E3 str. Alaska E43]
gi|188499398|gb|ACD52534.1| rhomboid family protein [Clostridium botulinum E3 str. Alaska E43]
Length = 321
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 73/154 (47%), Gaps = 27/154 (17%)
Query: 133 PAWYQ-----FVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGL--WLSYIFTGAAA 185
P YQ V AF H HL N++ LYI G VE+ FG+ +L F A
Sbjct: 177 PLIYQGEVWRLVACAFLHGGITHLLFNMYALYILGPQVEKI---FGIKKYLIIYFVSAIT 233
Query: 186 NFVSWLILPKNAVSVGASGAVFGLF-AISVL-VKMSWDWRKILEVLILGQFVVEKVMEAA 243
+ + L KN +SVGASGA+FGL AI V +K K + +LG ++ ++
Sbjct: 234 SSSLGVALNKNTISVGASGAIFGLLGAILVFSIKQRHKVEKEYILNLLGVIILNLLI--- 290
Query: 244 QASAGMSGTFIGGYSVQSINHIAHLSGALFGVFL 277
G+++ +I+++ H+ G L G+ +
Sbjct: 291 ------------GFNISNIDNLGHIGGFLGGIIM 312
>gi|78047064|ref|YP_363239.1| rhomboid family membrane protein [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|325925108|ref|ZP_08186525.1| uncharacterized membrane protein [Xanthomonas perforans 91-118]
gi|346724352|ref|YP_004851021.1| hypothetical protein XACM_1440 [Xanthomonas axonopodis pv.
citrumelo F1]
gi|381170297|ref|ZP_09879455.1| rhomboid family protein [Xanthomonas citri pv. mangiferaeindicae
LMG 941]
gi|390989747|ref|ZP_10260042.1| rhomboid family protein [Xanthomonas axonopodis pv. punicae str.
LMG 859]
gi|418515745|ref|ZP_13081924.1| hypothetical protein MOU_02892 [Xanthomonas axonopodis pv.
malvacearum str. GSPB1386]
gi|78035494|emb|CAJ23139.1| putative Rhomboid family membrane protein [Xanthomonas campestris
pv. vesicatoria str. 85-10]
gi|325544474|gb|EGD15840.1| uncharacterized membrane protein [Xanthomonas perforans 91-118]
gi|346649099|gb|AEO41723.1| Uncharacterized membrane protein [Xanthomonas axonopodis pv.
citrumelo F1]
gi|372555611|emb|CCF67017.1| rhomboid family protein [Xanthomonas axonopodis pv. punicae str.
LMG 859]
gi|380689167|emb|CCG35942.1| rhomboid family protein [Xanthomonas citri pv. mangiferaeindicae
LMG 941]
gi|410707654|gb|EKQ66105.1| hypothetical protein MOU_02892 [Xanthomonas axonopodis pv.
malvacearum str. GSPB1386]
Length = 202
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 70/155 (45%), Gaps = 34/155 (21%)
Query: 137 QFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNF-GLWLSYIFTGAAANFVSWLILPK 195
+ VT F HA+ HL N+ L+ FG+++E G L+Y AA VS ILP
Sbjct: 42 RLVTYGFIHADLGHLIFNMITLFFFGRVIENVMAQLTGSVLTYPLFYLAALVVS--ILPS 99
Query: 196 --------NAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASA 247
N +S+GASGAV + +L++ W IL + I A A
Sbjct: 100 YLKNQKNPNYLSLGASGAVSAVLFAFILLQ---PWTIILVLFI-------------PAPA 143
Query: 248 GMSGTFIGGYSV-------QSINHIAHLSGALFGV 275
+ F GYS+ INH AHL+GA FGV
Sbjct: 144 ILYAVFYVGYSLWMDRRGGDRINHSAHLAGAAFGV 178
>gi|392330118|ref|ZP_10274734.1| hypothetical protein SCAZ3_10580 [Streptococcus canis FSL Z3-227]
gi|391419990|gb|EIQ82801.1| hypothetical protein SCAZ3_10580 [Streptococcus canis FSL Z3-227]
Length = 223
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAAN-FVSWLILP 194
++ VT F H W H N LY G++ EE G+ L Y+F+G N F W L
Sbjct: 58 WRLVTPIFIHIGWGHFFVNALTLYFVGRMAEEIWGSRRFLLLYVFSGIMGNAFTMW--LT 115
Query: 195 KNAVSVGASGAVFGLFA 211
+ V+ GAS ++FGLFA
Sbjct: 116 PDTVAAGASTSLFGLFA 132
>gi|302535555|ref|ZP_07287897.1| conserved hypothetical protein [Streptomyces sp. C]
gi|302444450|gb|EFL16266.1| conserved hypothetical protein [Streptomyces sp. C]
Length = 290
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 70/148 (47%), Gaps = 21/148 (14%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+++ +T+ F H W H+ N+ L++ G +E G Y+ +G + + +L+
Sbjct: 123 YHRLLTSVFLHVEWWHIFGNMLALWVIGGPLEAALGRVRYLALYLLSGLGGSALVYLLTA 182
Query: 195 KNAVSVGASGAVFGLFAISVLV--KMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGT 252
N ++GASGAV GL +V++ ++ ++ R +L L L V T
Sbjct: 183 PNTPTLGASGAVCGLLGATVVLARRLRYEMRPVLVTLGLMLLV----------------T 226
Query: 253 FI--GGYSVQSINHIAHL-SGALFGVFL 277
F+ GG SV HI L +GAL + L
Sbjct: 227 FVPFGGLSVSWQAHIGGLVTGALVALGL 254
>gi|126660046|ref|ZP_01731167.1| hypothetical protein CY0110_12177 [Cyanothece sp. CCY0110]
gi|126618643|gb|EAZ89391.1| hypothetical protein CY0110_12177 [Cyanothece sp. CCY0110]
Length = 525
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/193 (29%), Positives = 89/193 (46%), Gaps = 22/193 (11%)
Query: 93 KPKKSVNGVFWIILLNLGLYVADHVFQVRSIKSLYLYHNFP-------AWYQFVTAAFCH 145
K K + +F+IIL LG + + +I+SLY +++ +TA F H
Sbjct: 325 KSKSNKITLFFIILNCLGFIIEINFGGSENIESLYQLGALVPMIVWQGEFWRLITANFLH 384
Query: 146 ANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFV-SWLILPKNAVS---VG 201
W H N+F LYI G LVE + ++ Y+F+G + F S + L N V VG
Sbjct: 385 YGWGHFLMNMFALYIIGNLVESLSNKYHYFVLYLFSGIGSMFAFSCVALYTNTVDYILVG 444
Query: 202 ASGAVFGL-------FAISVLVKMSWDWRKILEVLILG---QFVVEKVMEAAQASAGMSG 251
AS ++ GL F L S+ RK L +IL Q V + V+ + + G
Sbjct: 445 ASASIMGLVGSLTAIFLRKWLQDKSYINRKRLLTMILVISLQLVSDLVIPQVSMLSHLFG 504
Query: 252 TFIGGYSVQSINH 264
I G+++++I +
Sbjct: 505 LLI-GFTLENIGY 516
>gi|427390838|ref|ZP_18885244.1| hypothetical protein HMPREF9233_00747 [Actinobaculum massiliae
ACS-171-V-Col2]
gi|425732574|gb|EKU95382.1| hypothetical protein HMPREF9233_00747 [Actinobaculum massiliae
ACS-171-V-Col2]
Length = 221
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 72/145 (49%), Gaps = 16/145 (11%)
Query: 83 LELDKPEERR--KPKKSVNGVFWIILLNLGLYVADHVFQVRSIKSLY---LYHNFPAWYQ 137
+E ERR +P +V +I +N+G+Y+ + V+ S L+ + + P Y+
Sbjct: 1 MEEQSVTERRAYRPWATVA----LIAINIGVYLVEMVWSGLSQALLFAPGIAEDQP--YR 54
Query: 138 FVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNA 197
F+++AF H+ + HL N++ L++ G +E G + + Y N L ++
Sbjct: 55 FISSAFAHSGFWHLIFNMYALWLMGMFLERAIGRWRFVMLYALAAIGGNVFVLLTASEDT 114
Query: 198 VS-----VGASGAVFGLFAISVLVK 217
+ VGASGAVFGLF +V+
Sbjct: 115 MGWWTGVVGASGAVFGLFGALFVVQ 139
>gi|415886173|ref|ZP_11547996.1| serine peptidase [Bacillus methanolicus MGA3]
gi|387588826|gb|EIJ81147.1| serine peptidase [Bacillus methanolicus MGA3]
Length = 199
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 44/77 (57%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+++ VT H+ ++H+ N F L +FG +E G + Y +G AAN ++LI P
Sbjct: 58 YWRLVTPIVLHSGFSHMLFNSFSLVLFGPALERIIGKKKFMILYFSSGIAANIATFLIKP 117
Query: 195 KNAVSVGASGAVFGLFA 211
+ VG+SGA+FGLF
Sbjct: 118 LTFIHVGSSGAIFGLFG 134
>gi|260222883|emb|CBA32895.1| hypothetical protein Csp_B16320 [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 364
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 2/93 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ ++A F H HL+ N++ L+ G+L+E G + Y+ G N +S ++
Sbjct: 72 WWRLLSAMFIHFGVWHLAVNMWALWDIGRLLETLLGRWRFAALYLGAGVCGNLLSLVVQG 131
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWRKILE 227
AVS GASGAVFGL+ L+ W RK +E
Sbjct: 132 NRAVSGGASGAVFGLY--GALLVFLWVERKQVE 162
>gi|118619868|ref|YP_908200.1| serine protease [Mycobacterium ulcerans Agy99]
gi|118571978|gb|ABL06729.1| rhomboid family serine protease [Mycobacterium ulcerans Agy99]
Length = 254
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 2/96 (2%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
Y+ VT+AF H HL N++ LY+ G +E G Y + + + +LI P
Sbjct: 77 YRLVTSAFMHYGRLHLVFNMWALYVVGPPLEMWLGRLRFGGLYALSALGGSVLVYLIAPL 136
Query: 196 NAVSVGASGAVFGLFAISVLV--KMSWDWRKILEVL 229
N + GASGA+FGLF + +V +++ D R ++ ++
Sbjct: 137 NTATAGASGAIFGLFGATFVVAKRLNLDIRWVVALI 172
>gi|414153866|ref|ZP_11410188.1| Rhomboid family protein [Desulfotomaculum hydrothermale Lam5 = DSM
18033]
gi|411454887|emb|CCO08092.1| Rhomboid family protein [Desulfotomaculum hydrothermale Lam5 = DSM
18033]
Length = 216
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 57/116 (49%), Gaps = 4/116 (3%)
Query: 97 SVNGVFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFV--TAAFCHANWNHLSSN 154
+N + W+ L+LG Y+ D + + L+H FV TA F H +W H N
Sbjct: 22 GLNTLAWLYELSLGPYMDDLIL-FFGVTPAQLFHMGLGSQLFVMTTAMFLHGSWMHFLGN 80
Query: 155 LFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVS-VGASGAVFGL 209
+ +L+IFG VE+ G L Y+ TG A + P +A +GASGA+ G+
Sbjct: 81 MLYLWIFGDNVEDRMGKLRFLLFYLITGYLATLAHVISDPSSASPLIGASGAIAGV 136
>gi|402554172|ref|YP_006595443.1| rhomboid family protein [Bacillus cereus FRI-35]
gi|401795382|gb|AFQ09241.1| rhomboid family protein [Bacillus cereus FRI-35]
Length = 190
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T+ H + H N L+ G +E++ G+ + + +G N S+LI+P
Sbjct: 47 WWRLLTSLLVHVDLQHFLFNSICLFALGSCIEKQLGHLSFIIIFFLSGILGNMSSYLIMP 106
Query: 195 KNAVSVGASGAVFGLFA 211
+ GASG +FGL
Sbjct: 107 HEYIHAGASGGIFGLLG 123
>gi|390456491|ref|ZP_10242019.1| rhomboid protease gluP Intramembrane serine protease [Paenibacillus
peoriae KCTC 3763]
Length = 207
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 68/138 (49%), Gaps = 13/138 (9%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVS---WLI 192
+++V+A F HA ++HL N F + +F +E G+ L Y+ TG N +S + +
Sbjct: 62 WRYVSAMFLHAGFDHLLFNSFAILVFAPPLERLLGSLRYVLLYLVTGIVGNVMSIAHYNM 121
Query: 193 LPKNAVSVGASGAVFGLFAISVLVK------MSWDWRKILEVL----ILGQFVVEKVMEA 242
+ + VSVGASGA++G++ + V M RK L L IL F V +
Sbjct: 122 VAETTVSVGASGAIYGIYGAFLYVALFQRSFMDDASRKTLYTLLGFGILFSFAVANINWT 181
Query: 243 AQASAGMSGTFIGGYSVQ 260
A +SG F+ G V+
Sbjct: 182 AHFGGLLSGFFLYGLMVR 199
>gi|440716431|ref|ZP_20896941.1| Peptidase S54, rhomboid [Rhodopirellula baltica SWK14]
gi|436438529|gb|ELP32066.1| Peptidase S54, rhomboid [Rhodopirellula baltica SWK14]
Length = 410
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 61/116 (52%), Gaps = 4/116 (3%)
Query: 104 IILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGK 163
II N GL++ + + + L L + +Q+VT+AF HA+W+HL N+ FL+ FG
Sbjct: 21 IIAANTGLFLLTGMGEYGAHDWLILEFDRINPFQWVTSAFMHASWSHLIGNMVFLWCFGL 80
Query: 164 LVEEEEGNFGLWLSY----IFTGAAANFVSWLILPKNAVSVGASGAVFGLFAISVL 215
++E + G L Y + GA ++ ++GASG +F L A++V+
Sbjct: 81 VIEGKLGWQRFSLLYLGLALADGAIGQIPMFVFSDGQGGALGASGVIFALLAVAVI 136
>gi|309810248|ref|ZP_07704093.1| peptidase, S54 family [Lactobacillus iners SPIN 2503V10-D]
gi|312874222|ref|ZP_07734256.1| peptidase, S54 family [Lactobacillus iners LEAF 2052A-d]
gi|308169520|gb|EFO71568.1| peptidase, S54 family [Lactobacillus iners SPIN 2503V10-D]
gi|311090292|gb|EFQ48702.1| peptidase, S54 family [Lactobacillus iners LEAF 2052A-d]
Length = 232
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 64/131 (48%), Gaps = 13/131 (9%)
Query: 91 RRKPKKSVNGVF-W-IILLNLGLYVADHVFQVRS----------IKSLYLYHNFPAWYQF 138
+RK KK + +F W II + + +Y + F V + + ++ + W F
Sbjct: 7 KRKYKKYTSRIFTWSIIAILIIVYAIELFFDVNNDINKLLDFGCMNNIAVVTKLQFWRLF 66
Query: 139 VTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAV 198
TA F HA + H+ N+ +Y FG +E+ G+ Y+ +G N +S+ + N +
Sbjct: 67 -TAQFIHAGFFHVICNIVMIYFFGMYLEQFLGHIRYLTIYLLSGVGGNLLSFALGQDNVI 125
Query: 199 SVGASGAVFGL 209
S GAS AVFGL
Sbjct: 126 SCGASTAVFGL 136
>gi|313679165|ref|YP_004056904.1| rhomboid family protein [Oceanithermus profundus DSM 14977]
gi|313151880|gb|ADR35731.1| Rhomboid family protein [Oceanithermus profundus DSM 14977]
Length = 224
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 66/142 (46%), Gaps = 17/142 (11%)
Query: 140 TAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVS 199
T+ F H + H+ N++FL+IFG VE G L Y+ G A V L LP + V
Sbjct: 66 TSMFLHGGFEHILGNMWFLWIFGPAVEARLGGGRYLLVYLLAGIGAALVEALFLPGSTVP 125
Query: 200 -VGASGAVFG-------LFAISVLVKMSWDWRKIL----EVLILGQFVVEKVMEAAQASA 247
+GASGA+ G LF + ++ + W I +G +V+ +V+ A
Sbjct: 126 MIGASGAISGVLGAYFLLFPTAWILTLIWPLPPIFFWFPAAFFIGYWVLIQVLYGALGLP 185
Query: 248 GMS-----GTFIGGYSVQSINH 264
G++ G FI GY + ++
Sbjct: 186 GVAWWAHVGGFIVGYLLTYLSR 207
>gi|42525643|ref|NP_970741.1| rhomboid [Treponema denticola ATCC 35405]
gi|422340835|ref|ZP_16421776.1| rhomboid family protein [Treponema denticola F0402]
gi|449103871|ref|ZP_21740614.1| hypothetical protein HMPREF9730_01511 [Treponema denticola AL-2]
gi|449106028|ref|ZP_21742720.1| hypothetical protein HMPREF9729_00985 [Treponema denticola ASLM]
gi|449108116|ref|ZP_21744760.1| hypothetical protein HMPREF9722_00456 [Treponema denticola ATCC
33520]
gi|449110633|ref|ZP_21747233.1| hypothetical protein HMPREF9735_00282 [Treponema denticola ATCC
33521]
gi|449114556|ref|ZP_21751033.1| hypothetical protein HMPREF9721_01551 [Treponema denticola ATCC
35404]
gi|449118805|ref|ZP_21755206.1| hypothetical protein HMPREF9725_00671 [Treponema denticola H1-T]
gi|449121194|ref|ZP_21757546.1| hypothetical protein HMPREF9727_00306 [Treponema denticola MYR-T]
gi|449124938|ref|ZP_21761255.1| hypothetical protein HMPREF9723_01299 [Treponema denticola OTK]
gi|449129942|ref|ZP_21766170.1| hypothetical protein HMPREF9724_00835 [Treponema denticola SP37]
gi|451967767|ref|ZP_21920996.1| hypothetical protein HMPREF9728_00162 [Treponema denticola US-Trep]
gi|41815654|gb|AAS10622.1| rhomboid family protein [Treponema denticola ATCC 35405]
gi|325475239|gb|EGC78424.1| rhomboid family protein [Treponema denticola F0402]
gi|448940621|gb|EMB21526.1| hypothetical protein HMPREF9723_01299 [Treponema denticola OTK]
gi|448944577|gb|EMB25455.1| hypothetical protein HMPREF9724_00835 [Treponema denticola SP37]
gi|448951420|gb|EMB32233.1| hypothetical protein HMPREF9727_00306 [Treponema denticola MYR-T]
gi|448951833|gb|EMB32642.1| hypothetical protein HMPREF9725_00671 [Treponema denticola H1-T]
gi|448956181|gb|EMB36943.1| hypothetical protein HMPREF9721_01551 [Treponema denticola ATCC
35404]
gi|448960007|gb|EMB40724.1| hypothetical protein HMPREF9735_00282 [Treponema denticola ATCC
33521]
gi|448961966|gb|EMB42660.1| hypothetical protein HMPREF9722_00456 [Treponema denticola ATCC
33520]
gi|448964324|gb|EMB44996.1| hypothetical protein HMPREF9730_01511 [Treponema denticola AL-2]
gi|448966596|gb|EMB47251.1| hypothetical protein HMPREF9729_00985 [Treponema denticola ASLM]
gi|451703553|gb|EMD57919.1| hypothetical protein HMPREF9728_00162 [Treponema denticola US-Trep]
Length = 209
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 78/165 (47%), Gaps = 19/165 (11%)
Query: 92 RKPKKSV--NGVFWIILLNLGLYVADHVFQVRSIKSLY-----LYHNFPAWYQFVTAAFC 144
RKP K N V I L+N G++V +F R++ + L ++QF T F
Sbjct: 5 RKPFKYTYKNAVLIIALINAGVFVFTSLF--RNLSAYLGLVPILVVEAQTYWQFFTYQFV 62
Query: 145 HANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNA----VSV 200
H ++ HL+ N+ L+ FG VE + G L Y+ G +S+L+ +
Sbjct: 63 HGDFFHLAFNMLALFFFGVPVERKIGTKEFILYYLLIGTIGGILSFLVYAATGFYTITLI 122
Query: 201 GASGAVFG---LFAISVLVKMSWDWRKI---LEVLILGQFVVEKV 239
GASGA+FG L+A+ + + W I +LILG V+E +
Sbjct: 123 GASGAIFGVLLLYAVLYPNSVIYIWGVIPVPAPLLILGYAVIELI 167
>gi|299823020|ref|ZP_07054906.1| possible Rhomboid protease [Listeria grayi DSM 20601]
gi|299816549|gb|EFI83787.1| possible Rhomboid protease [Listeria grayi DSM 20601]
Length = 512
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 16/143 (11%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T F H W H+++N LYI G E+ G + L + G A N S+++
Sbjct: 227 WWRLITPMFLHNGWMHIAANAVMLYIVGPWAEKIYGKWRFALILLIGGFAGNLASFVL-- 284
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFI 254
N +SVGAS +VF +F +L +++L + K + A+ + I
Sbjct: 285 NNHLSVGASTSVFAVFG------------ALLYLVVLKPNLYAKTIGTNVATLVVVNILI 332
Query: 255 GGYSVQSINHIAHLSGALFGVFL 277
G +S + I+ + H+ G L G FL
Sbjct: 333 GLFSAE-IDMMGHI-GGLVGGFL 353
>gi|365163839|ref|ZP_09359938.1| hypothetical protein HMPREF1014_05401 [Bacillus sp. 7_6_55CFAA_CT2]
gi|363614620|gb|EHL66105.1| hypothetical protein HMPREF1014_05401 [Bacillus sp. 7_6_55CFAA_CT2]
Length = 206
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 44/77 (57%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T+ H + H SN FL+ G +E++ G+F ++ + +G + N S++I+P
Sbjct: 47 WWRVITSLLVHVDLQHFLSNSIFLFALGSSIEKQLGHFSFFILFFLSGISGNISSYIIMP 106
Query: 195 KNAVSVGASGAVFGLFA 211
+ GASG +FGL
Sbjct: 107 LEYIHAGASGGIFGLLG 123
>gi|259418338|ref|ZP_05742256.1| rhomboid family protein [Silicibacter sp. TrichCH4B]
gi|259345733|gb|EEW57577.1| rhomboid family protein [Silicibacter sp. TrichCH4B]
Length = 256
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
+ +T+ F H HL+ N+ FL+IFG +E+E G+ L Y+ +G A V + P
Sbjct: 62 FTLLTSMFIHGGIMHLAGNMLFLWIFGDNMEDEMGHLPFLLFYLVSGVGATLVHVMSAPM 121
Query: 196 NAVS-VGASGAVFGLFAISVLV 216
+ V VGASGA+ G+ +L+
Sbjct: 122 SNVPLVGASGAIAGVMGGYLLM 143
>gi|184155757|ref|YP_001844097.1| hypothetical protein LAF_1281 [Lactobacillus fermentum IFO 3956]
gi|260663527|ref|ZP_05864417.1| rhomboid family protein [Lactobacillus fermentum 28-3-CHN]
gi|183227101|dbj|BAG27617.1| conserved hypothetical protein [Lactobacillus fermentum IFO 3956]
gi|260552068|gb|EEX25121.1| rhomboid family protein [Lactobacillus fermentum 28-3-CHN]
Length = 221
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ TAAF H HL N+ LY G+ +EE G+ + + Y+ + N VS + P
Sbjct: 53 WWRVFTAAFLHIGLTHLFLNMMVLYYLGRTIEELTGHLRMAVIYLVSILMGNLVSVAVQP 112
Query: 195 KNAVSVGASGAVFGLFA 211
+S GAS +FGLF
Sbjct: 113 VT-ISAGASTGIFGLFG 128
>gi|163814769|ref|ZP_02206158.1| hypothetical protein COPEUT_00920 [Coprococcus eutactus ATCC 27759]
gi|158450404|gb|EDP27399.1| peptidase, S54 family [Coprococcus eutactus ATCC 27759]
Length = 194
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 19/136 (13%)
Query: 134 AWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLIL 193
+ + T F HA+W+HL +N+ L + G L+EE+ G+ L + + T V ++
Sbjct: 57 TYVRMFTHVFGHASWSHLINNMTLLLVIGPLLEEKYGSADLLIVTVTTAFVTGIVHFIFF 116
Query: 194 PKNAVSVGASGAVFGLFAIS--------------VLVKMSWDWRKILEVLILGQFVVEKV 239
P A+ +GASG VF +S +LV + + +I++ G F+ + V
Sbjct: 117 PGTAL-LGASGVVFAYILLSSFACIKDGSIPLTFILVTILYIGGQIVD----GVFIKDNV 171
Query: 240 MEAAQASAGMSGTFIG 255
G+ G F G
Sbjct: 172 SNLTHIIGGIIGAFFG 187
>gi|86609451|ref|YP_478213.1| S54 family peptidase [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86557993|gb|ABD02950.1| peptidase, S54 (rhomboid) family [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 248
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 4/111 (3%)
Query: 133 PAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLI 192
P W T+ F H + H+ N+ FL++FG VE+ G+ + Y+ GA A W
Sbjct: 67 PEWITLFTSQFLHGGFLHIGGNMLFLWVFGNNVEDRLGHLRYLIFYLACGALAALTQWFF 126
Query: 193 LPKNAV-SVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEA 242
+ + S+GASGA+ G+ +L + +IL ++ LG F+ + A
Sbjct: 127 DMGSPIPSLGASGAIAGVLGAYIL---RFPRAEILTLVPLGIFITTLYVPA 174
>gi|289662960|ref|ZP_06484541.1| hypothetical protein XcampvN_07693 [Xanthomonas campestris pv.
vasculorum NCPPB 702]
gi|289670187|ref|ZP_06491262.1| hypothetical protein XcampmN_17269 [Xanthomonas campestris pv.
musacearum NCPPB 4381]
Length = 202
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 70/155 (45%), Gaps = 34/155 (21%)
Query: 137 QFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNF-GLWLSYIFTGAAANFVSWLILPK 195
+ VT F HA+ HL N+ L+ FG+++E G L+Y AA VS ILP
Sbjct: 42 RLVTYGFIHADLGHLVFNMVTLFFFGRVIENVMAELTGSVLTYPLFYLAALVVS--ILPS 99
Query: 196 --------NAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASA 247
N +S+GASGAV + +L++ W IL + I A A
Sbjct: 100 YLKNQKNPNYLSLGASGAVSAVLFAFILLQ---PWTIILVLFI-------------PAPA 143
Query: 248 GMSGTFIGGYSV-------QSINHIAHLSGALFGV 275
+ F GYS+ INH AHL+GA FGV
Sbjct: 144 ILYAVFYVGYSLWMDRRGGDRINHSAHLAGAAFGV 178
>gi|254504600|ref|ZP_05116751.1| peptidase, S54 (rhomboid) family, putative [Labrenzia alexandrii
DFL-11]
gi|222440671|gb|EEE47350.1| peptidase, S54 (rhomboid) family, putative [Labrenzia alexandrii
DFL-11]
Length = 230
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 132 FPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWL 191
P W VT AF H ++ HL N+ FL++FG VE+ G+ G ++ Y+ AA F
Sbjct: 70 LPEWSGIVTYAFLHGDFMHLLGNMLFLWVFGDNVEDAVGHIGYFVFYLLCAAAGGFAYAA 129
Query: 192 ILPKNAVS-VGASGAVFGLFA 211
+ P + + +GASGAV G+ A
Sbjct: 130 LDPGSEIPLIGASGAVSGVVA 150
>gi|209551136|ref|YP_002283053.1| rhomboid family protein [Rhizobium leguminosarum bv. trifolii
WSM2304]
gi|424916599|ref|ZP_18339963.1| putative membrane protein [Rhizobium leguminosarum bv. trifolii
WSM597]
gi|209536892|gb|ACI56827.1| Rhomboid family protein [Rhizobium leguminosarum bv. trifolii
WSM2304]
gi|392852775|gb|EJB05296.1| putative membrane protein [Rhizobium leguminosarum bv. trifolii
WSM597]
Length = 265
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 133 PAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLI 192
P ++T AF H+ + HL+SN+ FL++FG VE+ G+ + Y+ AA L+
Sbjct: 70 PEPLTYLTYAFVHSGFWHLASNMIFLWVFGDNVEDAMGHLRFLIFYLLCAAAGALCHGLL 129
Query: 193 -LPKNAVSVGASGAVFGLFAISVLV 216
+ A VGASGA+ G+ A VL+
Sbjct: 130 TMTSQAPLVGASGAISGVIAAYVLL 154
>gi|375308022|ref|ZP_09773309.1| rhomboid family protein [Paenibacillus sp. Aloe-11]
gi|375080353|gb|EHS58574.1| rhomboid family protein [Paenibacillus sp. Aloe-11]
Length = 207
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 68/138 (49%), Gaps = 13/138 (9%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVS---WLI 192
+++V+A F HA ++HL N F + +F +E G+ L Y+ TG N +S + +
Sbjct: 62 WRYVSAIFLHAGFDHLLFNSFAILVFAPPLERLLGSLRYVLLYLVTGIVGNVMSIAHYNM 121
Query: 193 LPKNAVSVGASGAVFGLFAISVLVK------MSWDWRKILEVL----ILGQFVVEKVMEA 242
+ + VSVGASGA++G++ + V M RK L L IL F V +
Sbjct: 122 VAETTVSVGASGAIYGIYGAFLYVALFQRSFMDDASRKTLYTLLGFGILFSFAVANINWT 181
Query: 243 AQASAGMSGTFIGGYSVQ 260
A +SG F+ G V+
Sbjct: 182 AHFGGLLSGFFLYGLMVR 199
>gi|345022776|ref|ZP_08786389.1| hypothetical protein OTW25_15910 [Ornithinibacillus scapharcae
TW25]
Length = 254
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 127 YLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAAN 186
Y+ H W +F+T F H H+ N F L +FG +E G ++Y+ G AN
Sbjct: 53 YMIHQGEYW-RFITPIFLHGGLMHMLFNSFSLVLFGPALERMIGKSMFLIAYLGAGVLAN 111
Query: 187 FVSWLILPKNAVS-VGASGAVFGLFAISVLV 216
++ I P VGASGA+FGLF I + +
Sbjct: 112 ITTFFINPSFMFPHVGASGAIFGLFGIYIFM 142
>gi|403509381|ref|YP_006641019.1| rhomboid family protein [Nocardiopsis alba ATCC BAA-2165]
gi|402803589|gb|AFR10999.1| rhomboid family protein [Nocardiopsis alba ATCC BAA-2165]
Length = 256
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ +TAAF H HL N + +Y G +E G+ G +L+ F GA + V LI
Sbjct: 85 WYRLITAAFLHGGVLHLLFNSYAMYALGPQLERWLGH-GRFLALWFLGALSGSVLSLIAT 143
Query: 195 KNAVSVGASGAVFGLFA 211
N SVGASGA+F LF
Sbjct: 144 PNQPSVGASGAIFALFG 160
>gi|339498774|ref|YP_004696809.1| peptidase S54, rhomboid domain-containing protein [Spirochaeta
caldaria DSM 7334]
gi|338833123|gb|AEJ18301.1| Peptidase S54, rhomboid domain protein [Spirochaeta caldaria DSM
7334]
Length = 251
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 74/152 (48%), Gaps = 10/152 (6%)
Query: 133 PAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTG---AAANFVS 189
P + + + F H H++ N+ FL IFG VE+ G+F L Y+ +G AAA+ +
Sbjct: 85 PVFLTILISMFMHGGIAHIAGNMLFLSIFGDNVEDRLGHFRYLLFYLVSGLMAAAAHILV 144
Query: 190 WLILPKNAV--SVGASGAVFGLFAISVLVKMSWDWRKILEVLI---LGQFVVEKVMEAAQ 244
+ + ++GASGA+ G+ +L+ R +L +I + VV + Q
Sbjct: 145 CFVTGDGLLTPTLGASGAISGIMGAYLLLFPGNRVRVLLFNIIPTTVSAIVVIGLWFIFQ 204
Query: 245 ASAGMSGTFIGGYSVQSINHIAHLSGALFGVF 276
+ G+ ++GG + + AH+ G L+G F
Sbjct: 205 ITNGLG--YLGGVRGDGVAYAAHIGGFLYGFF 234
>gi|428202101|ref|YP_007080690.1| hypothetical protein Ple7327_1780 [Pleurocapsa sp. PCC 7327]
gi|427979533|gb|AFY77133.1| putative membrane protein [Pleurocapsa sp. PCC 7327]
Length = 237
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 73/163 (44%), Gaps = 26/163 (15%)
Query: 133 PAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLI 192
P VT+ F HA + H+ N+ FL+IFG VEE G+ + Y+ G A+ W
Sbjct: 67 PEPLTLVTSQFIHAGFVHIGFNMLFLWIFGNNVEEALGSLKYLVFYLTCGILASLTQWFF 126
Query: 193 LPKNAV-SVGASGAVFGLFAISVL------------VKMSWDWRKILEVLILGQFVVEKV 239
++ + S+GASGA+ G+ +L + + W +I V LG + +++
Sbjct: 127 SAQSPIPSLGASGAIAGVMGAYILKFPTARVVTLIPLGLFWTTVRIPAVFFLGFWFLQQA 186
Query: 240 MEA-----AQASAGMSGTFIGGYSVQSINHIAHLSGALFGVFL 277
+ +A GM GG + + AH G +FG L
Sbjct: 187 FNSLASFDVRAHIGMES---GG-----VAYWAHAGGFVFGAIL 221
>gi|398309567|ref|ZP_10513041.1| sporulation membrane protein/ endopeptidase YdcA [Bacillus
mojavensis RO-H-1]
Length = 199
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 69/143 (48%), Gaps = 13/143 (9%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ VT F HA + HL N +++F +E G L Y +G N ++ P
Sbjct: 58 WWRLVTPIFLHAGFTHLLFNSMSIFLFAPALERMLGKARFLLVYAGSGMIGNIGTYFTEP 117
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFI 254
+ + VGASGA+FGLF + + + + +RK L +GQ + ++ + MS FI
Sbjct: 118 LDYLHVGASGAIFGLFGVYLFMVL---FRKEL----IGQDNSKMILTLLAFAVLMS--FI 168
Query: 255 GGYSVQSINHIAHLSGALFGVFL 277
+IN +AHL G G L
Sbjct: 169 N----SNINMMAHLFGLCGGFLL 187
>gi|430851801|ref|ZP_19469536.1| S54 family peptidase [Enterococcus faecium E1258]
gi|430542383|gb|ELA82491.1| S54 family peptidase [Enterococcus faecium E1258]
Length = 232
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 127 YLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAAN 186
YL H F W++ VT F H H N LY G+ +E G++ +L Y+F+G N
Sbjct: 51 YLVH-FNEWWRLVTPIFIHFGLMHFVMNSLILYFMGQQIEAIYGHWRFFLIYMFSGIMGN 109
Query: 187 FVSWLILPKNAVSVGASGAVFGLFA 211
S+ N +S GAS ++FGLF
Sbjct: 110 TASFAFNEANVLSGGASTSIFGLFG 134
>gi|39995957|ref|NP_951908.1| rhomboid-like membrane protein [Geobacter sulfurreducens PCA]
gi|409911402|ref|YP_006889867.1| rhomboid-like membrane protein [Geobacter sulfurreducens KN400]
gi|39982721|gb|AAR34181.1| rhomboid-related membrane protein [Geobacter sulfurreducens PCA]
gi|298504970|gb|ADI83693.1| rhomboid-related membrane protein [Geobacter sulfurreducens KN400]
Length = 241
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 46/88 (52%), Gaps = 1/88 (1%)
Query: 130 HNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVS 189
H A +T+ F H NW H+ SN+ +L+IFG VE+ G F + Y+ GA A
Sbjct: 72 HPLLALPTIITSMFLHGNWLHIGSNMLYLWIFGNNVEDVLGRFRFVVFYLGCGAVAALAQ 131
Query: 190 WLILPKNAVS-VGASGAVFGLFAISVLV 216
P + + VGASGAV G+ +L+
Sbjct: 132 VASAPGSDIPMVGASGAVAGVMGAYLLL 159
>gi|297564876|ref|YP_003683848.1| rhomboid family protein [Meiothermus silvanus DSM 9946]
gi|296849325|gb|ADH62340.1| Rhomboid family protein [Meiothermus silvanus DSM 9946]
Length = 211
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 92/210 (43%), Gaps = 35/210 (16%)
Query: 86 DKPEERRKPKKSVNGVFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPA---------WY 136
D RR P V ++L NL ++V F +++ Y P+ W
Sbjct: 6 DINRSRRTPYV----VRLLVLANLAVFVWQFFFFPDPDQAILQYGFIPSRFWADPTSEWP 61
Query: 137 QFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKN 196
+ ++ F H H+ N++FL++FG +E++ G+F + Y+ G AA L+
Sbjct: 62 RIFSSMFMHGGLAHILGNMWFLWVFGDNIEDQLGHFRFLVFYLLGGVAAALAQGLVFAST 121
Query: 197 AVS-VGASG---AVFGLFAI-----SVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASA 247
V VGASG AV G + + +VL + W + + LG + + +++ Q+ A
Sbjct: 122 DVPMVGASGAISAVLGAYIVLFPRATVLSLVGWIPLPVPAFIYLGYWALIQLL---QSFA 178
Query: 248 GMSGTFIGGYSVQSINHIAHLSGALFGVFL 277
G+ G I AH+ G +FG L
Sbjct: 179 GVEG----------IAFWAHIGGFIFGTVL 198
>gi|386284983|ref|ZP_10062202.1| hypothetical protein SULAR_07038 [Sulfurovum sp. AR]
gi|385344386|gb|EIF51103.1| hypothetical protein SULAR_07038 [Sulfurovum sp. AR]
Length = 226
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 63/147 (42%), Gaps = 25/147 (17%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +TA F H HL N+F LY+ G+ E Y F+G VS I P
Sbjct: 57 WWRLLTAMFLHGGMTHLLMNMFSLYLVGRGAEMYFDTKSYLSIYFFSGIIGGLVSLYIHP 116
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSG--- 251
+ V VGASGA+FG+F + G F+ + A+ A M
Sbjct: 117 VS-VGVGASGAIFGVFGA-----------------LAGFFLAHREKIASHTKAFMKDFSI 158
Query: 252 ----TFIGGYSVQSINHIAHLSGALFG 274
+ G+S+ SI+ AH+ G + G
Sbjct: 159 IIAINLVIGFSIPSIDVSAHIGGLIVG 185
>gi|110679746|ref|YP_682753.1| hypothetical protein RD1_2508 [Roseobacter denitrificans OCh 114]
gi|109455862|gb|ABG32067.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114]
Length = 247
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 58/107 (54%), Gaps = 9/107 (8%)
Query: 119 QVRSIKSLYL-YHNFPA-------WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEG 170
VR+I + +L + PA +Y +++ F H + HL+ N+ FL+IFG +E+E G
Sbjct: 37 DVRAINAFWLQWAMIPARLSQGDGYYTLISSMFLHGGFFHLAGNMLFLWIFGDNIEDELG 96
Query: 171 NFGLWLSYIFTGAAANFVSWLILPKNAV-SVGASGAVFGLFAISVLV 216
+ L Y+ G A+ + + P + +VGASGA+ G+ +L+
Sbjct: 97 HGKFILFYLGCGIIASLAQYAVDPMAMIPTVGASGAIAGVMGGYLLL 143
>gi|336176302|ref|YP_004581677.1| rhomboid family protein [Frankia symbiont of Datisca glomerata]
gi|334857282|gb|AEH07756.1| Rhomboid family protein [Frankia symbiont of Datisca glomerata]
Length = 377
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 64/126 (50%), Gaps = 5/126 (3%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+Y+ +TAAF HA H+ N++ LY+ G +E+ G ++ N +S+LI
Sbjct: 206 YYRLLTAAFLHAGVLHILFNMYALYLLGSQLEQILGRARYLALFVVCAIGGNTLSYLING 265
Query: 195 KNAVSVGASGAVFGLFAISVLV--KMSWDWRKILEVL---ILGQFVVEKVMEAAQASAGM 249
N SVGAS AVFG FA ++ ++ D IL ++ ++ F + ++ + +
Sbjct: 266 WNTFSVGASTAVFGFFAAYYVIARRLRADTSAILIIVGINLIITFTIARIDKWGHIGGLV 325
Query: 250 SGTFIG 255
+G +G
Sbjct: 326 AGLVVG 331
>gi|430843907|ref|ZP_19461805.1| S54 family peptidase [Enterococcus faecium E1050]
gi|430854949|ref|ZP_19472660.1| S54 family peptidase [Enterococcus faecium E1392]
gi|430496497|gb|ELA72556.1| S54 family peptidase [Enterococcus faecium E1050]
gi|430547487|gb|ELA87410.1| S54 family peptidase [Enterococcus faecium E1392]
Length = 232
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 127 YLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAAN 186
YL H F W++ VT F H H N LY G+ +E G++ +L Y+F+G N
Sbjct: 51 YLVH-FNEWWRLVTPIFIHFGLMHFVMNSLILYFMGQQIEAIYGHWRFFLIYMFSGIMGN 109
Query: 187 FVSWLILPKNAVSVGASGAVFGLFA 211
S+ N +S GAS ++FGLF
Sbjct: 110 TASFAFNEANVLSGGASTSIFGLFG 134
>gi|308175827|ref|YP_003915233.1| rhomboid family protein [Arthrobacter arilaitensis Re117]
gi|307743290|emb|CBT74262.1| rhomboid family protein [Arthrobacter arilaitensis Re117]
Length = 285
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 99/244 (40%), Gaps = 49/244 (20%)
Query: 60 RHPSLTLRSRLVCNMSGSDMISQLELDKP-----------EERRKPKKSVN-------GV 101
RHP S + CN G + Q ++ P +R P++ G
Sbjct: 18 RHPQTI--SFVSCNRCGRPVCPQCQVSAPVGVQCVECVAQANKRLPQQKTQFGGRLRAGA 75
Query: 102 FWIILLNLGLYVADHVFQ---VRSIKSLYLYHNFPAW--YQFVTAAFCHANWN--HLSSN 154
+ +GL V +V Q L L A+ ++ +T+AF H+ + HL+ N
Sbjct: 76 PIVTYTFIGLNVLVYVLQWVIPGLTNQLVLAPALAAYEPWRLITSAFAHSTSSLLHLAMN 135
Query: 155 LFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFAISV 214
++ +YIFG ++E G Y+ + + L+ + ++GASGA+ GLF
Sbjct: 136 MYGVYIFGTMLEPRMGRLRFTWLYLLSAFGGSLGILLLSAPLSATLGASGALAGLF---- 191
Query: 215 LVKMSWDWRKILEVLILGQFVVEKVMEAAQASAG--MSGTFIGGYSVQSINHIAHLSGAL 272
L FVV + + A S G ++ G+ VQSI+ HL GA+
Sbjct: 192 ----------------LATFVVFRSNKQALRSMGIILALNVALGFFVQSISWQGHLGGAI 235
Query: 273 FGVF 276
G+
Sbjct: 236 LGIL 239
>gi|404496011|ref|YP_006720117.1| rhomboid-like membrane protein [Geobacter metallireducens GS-15]
gi|418066781|ref|ZP_12704139.1| Rhomboid family protein [Geobacter metallireducens RCH3]
gi|78193622|gb|ABB31389.1| rhomboid-related membrane protein [Geobacter metallireducens GS-15]
gi|373559919|gb|EHP86198.1| Rhomboid family protein [Geobacter metallireducens RCH3]
Length = 240
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 130 HNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVS 189
H AW ++ F H NW H+ SN+ +L+IFG VE+ G L Y GA A
Sbjct: 72 HPLLAWPTVFSSMFLHGNWLHIGSNMLYLWIFGNNVEDVLGRGRFILFYFTCGAVAALAQ 131
Query: 190 WLILPKNAVS-VGASGAVFGLFAISVLV 216
+ P + + VGASGAV G+ +L+
Sbjct: 132 VMSAPGSDIPMVGASGAVAGVMGAYLLL 159
>gi|421211938|ref|ZP_15668916.1| rhomboid family protein [Streptococcus pneumoniae 2070035]
gi|421232781|ref|ZP_15689418.1| rhomboid family protein [Streptococcus pneumoniae 2080076]
gi|395571629|gb|EJG32240.1| rhomboid family protein [Streptococcus pneumoniae 2070035]
gi|395593310|gb|EJG53559.1| rhomboid family protein [Streptococcus pneumoniae 2080076]
Length = 225
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 62/129 (48%), Gaps = 11/129 (8%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
++ ++A F H W H N+ LY G+ VEE G+ + Y+ +G N ++ PK
Sbjct: 59 WRLLSAIFVHIGWEHFIVNMLLLYYLGRQVEEIFGSKQFFFLYLLSGMMGNLFVFVFSPK 118
Query: 196 NAVSVGASGAVFGLFAISVLVK----------MSWDWRKILEVLILGQFVVEKVMEAAQA 245
+ ++ GAS +++GLFA ++++ + + + V I+G ++ + A
Sbjct: 119 S-LAAGASTSLYGLFAAIIVLRYATRNPYIQQLGQSYLTLFVVNIIGSVLIPGISLAGHI 177
Query: 246 SAGMSGTFI 254
+ G F+
Sbjct: 178 GGAVGGAFL 186
>gi|372281336|ref|ZP_09517372.1| rhomboid family protein [Oceanicola sp. S124]
Length = 270
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 140 TAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAV- 198
T+ F H + HL+ N+ FL+IFG +EEE G+ G Y+ +G A + P + V
Sbjct: 63 TSMFLHGGFMHLAGNMLFLWIFGDNLEEEMGHLGFLAFYLASGIGAGLTHVISAPGSMVP 122
Query: 199 SVGASGAVFGLFAISVLV 216
+VGASGA+ G+ +L+
Sbjct: 123 TVGASGAIAGVMGGYLLL 140
>gi|75760680|ref|ZP_00740706.1| Integral membrane protein (Rhomboid family) [Bacillus thuringiensis
serovar israelensis ATCC 35646]
gi|74491830|gb|EAO55020.1| Integral membrane protein (Rhomboid family) [Bacillus thuringiensis
serovar israelensis ATCC 35646]
Length = 166
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 44/77 (57%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T+ H + H SN FL+ G +E++ G+F ++ + +G + N S++I+P
Sbjct: 23 WWRVITSLLVHVDLQHFLSNSIFLFALGSSIEKQLGHFSFFILFFISGISGNISSYIIMP 82
Query: 195 KNAVSVGASGAVFGLFA 211
+ GASG +FGL
Sbjct: 83 PEYIHAGASGGIFGLLG 99
>gi|455790559|gb|EMF42421.1| peptidase, S54 family [Leptospira interrogans serovar Lora str. TE
1992]
Length = 272
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 89/189 (47%), Gaps = 30/189 (15%)
Query: 98 VNGVFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHA--NWNHLSSNL 155
+NG + + L L V D++ + S + H+F W QF+T AF H+ N+ H+ N+
Sbjct: 22 LNGSIFAVQLLLSWTVGDYLTLYFGMTSDMITHHFFIW-QFLTYAFLHSVQNFFHILFNM 80
Query: 156 FFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP---KNAVSVGASGAVFGLFAI 212
F L++FG ++E G+ Y+F+ F W++ +GASG ++GL
Sbjct: 81 FSLWMFGSVLESYWGSRNFLKFYLFSCFMGGFFPWILHNVGFHQGTIIGASGGIYGL--- 137
Query: 213 SVLVKMSWDWRKILEVLILGQF-------VVEKVMEAAQASAGMSGTFIGGYSVQSINHI 265
L+ + W E+L +G F VV ++ A + +G +I H+
Sbjct: 138 --LIAFALIWPN-QELLFMGFFPLKAKYMVVILMLIIAFSGSG-----------SNIAHM 183
Query: 266 AHLSGALFG 274
AHL GA+ G
Sbjct: 184 AHLGGAIGG 192
>gi|69250415|ref|ZP_00605147.1| Rhomboid-like protein [Enterococcus faecium DO]
gi|257878558|ref|ZP_05658211.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
gi|257883193|ref|ZP_05662846.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
gi|257884310|ref|ZP_05663963.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
gi|257889244|ref|ZP_05668897.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
gi|257894684|ref|ZP_05674337.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
gi|260560144|ref|ZP_05832322.1| predicted protein [Enterococcus faecium C68]
gi|261208172|ref|ZP_05922846.1| predicted protein [Enterococcus faecium TC 6]
gi|289566221|ref|ZP_06446654.1| predicted protein [Enterococcus faecium D344SRF]
gi|293553953|ref|ZP_06674557.1| integral membrane protein [Enterococcus faecium E1039]
gi|293559375|ref|ZP_06675916.1| integral membrane protein [Enterococcus faecium E1162]
gi|293567435|ref|ZP_06678782.1| integral membrane protein [Enterococcus faecium E1071]
gi|294618879|ref|ZP_06698391.1| hypothetical protein EfmE1679_1730 [Enterococcus faecium E1679]
gi|294620730|ref|ZP_06699937.1| integral membrane protein [Enterococcus faecium U0317]
gi|383329069|ref|YP_005354953.1| peptidase, S54 family protein [Enterococcus faecium Aus0004]
gi|406581363|ref|ZP_11056520.1| peptidase, S54 family protein [Enterococcus sp. GMD4E]
gi|406583667|ref|ZP_11058722.1| peptidase, S54 family protein [Enterococcus sp. GMD3E]
gi|406585946|ref|ZP_11060899.1| peptidase, S54 family protein [Enterococcus sp. GMD2E]
gi|406591288|ref|ZP_11065573.1| peptidase, S54 family protein [Enterococcus sp. GMD1E]
gi|410937330|ref|ZP_11369191.1| S54 family peptidase [Enterococcus sp. GMD5E]
gi|415887925|ref|ZP_11549016.1| integral membrane protein [Enterococcus faecium E4453]
gi|416135289|ref|ZP_11598486.1| integral membrane protein [Enterococcus faecium E4452]
gi|427396310|ref|ZP_18889069.1| hypothetical protein HMPREF9307_01245 [Enterococcus durans
FB129-CNAB-4]
gi|430819831|ref|ZP_19438475.1| S54 family peptidase [Enterococcus faecium E0045]
gi|430825622|ref|ZP_19443826.1| S54 family peptidase [Enterococcus faecium E0164]
gi|430827756|ref|ZP_19445888.1| S54 family peptidase [Enterococcus faecium E0269]
gi|430830843|ref|ZP_19448899.1| S54 family peptidase [Enterococcus faecium E0333]
gi|430832956|ref|ZP_19450969.1| S54 family peptidase [Enterococcus faecium E0679]
gi|430835660|ref|ZP_19453648.1| S54 family peptidase [Enterococcus faecium E0680]
gi|430838244|ref|ZP_19456192.1| S54 family peptidase [Enterococcus faecium E0688]
gi|430845905|ref|ZP_19463770.1| S54 family peptidase [Enterococcus faecium E1133]
gi|430849513|ref|ZP_19467289.1| S54 family peptidase [Enterococcus faecium E1185]
gi|430858002|ref|ZP_19475631.1| S54 family peptidase [Enterococcus faecium E1552]
gi|430860336|ref|ZP_19477939.1| S54 family peptidase [Enterococcus faecium E1573]
gi|430871476|ref|ZP_19483799.1| S54 family peptidase [Enterococcus faecium E1575]
gi|430948341|ref|ZP_19485930.1| S54 family peptidase [Enterococcus faecium E1576]
gi|431005335|ref|ZP_19488981.1| S54 family peptidase [Enterococcus faecium E1578]
gi|431146274|ref|ZP_19499171.1| S54 family peptidase [Enterococcus faecium E1620]
gi|431229909|ref|ZP_19502112.1| S54 family peptidase [Enterococcus faecium E1622]
gi|431252249|ref|ZP_19504307.1| S54 family peptidase [Enterococcus faecium E1623]
gi|431292229|ref|ZP_19506777.1| S54 family peptidase [Enterococcus faecium E1626]
gi|431371343|ref|ZP_19509976.1| S54 family peptidase [Enterococcus faecium E1627]
gi|431497561|ref|ZP_19514715.1| S54 family peptidase [Enterococcus faecium E1634]
gi|431542045|ref|ZP_19518274.1| S54 family peptidase [Enterococcus faecium E1731]
gi|431651848|ref|ZP_19523777.1| S54 family peptidase [Enterococcus faecium E1904]
gi|431742997|ref|ZP_19531878.1| S54 family peptidase [Enterococcus faecium E2071]
gi|431746314|ref|ZP_19535148.1| S54 family peptidase [Enterococcus faecium E2134]
gi|431749981|ref|ZP_19538709.1| S54 family peptidase [Enterococcus faecium E2297]
gi|431754961|ref|ZP_19543621.1| S54 family peptidase [Enterococcus faecium E2883]
gi|431764245|ref|ZP_19552788.1| S54 family peptidase [Enterococcus faecium E4215]
gi|431767338|ref|ZP_19555792.1| S54 family peptidase [Enterococcus faecium E1321]
gi|431770954|ref|ZP_19559348.1| S54 family peptidase [Enterococcus faecium E1644]
gi|431772407|ref|ZP_19560748.1| S54 family peptidase [Enterococcus faecium E2369]
gi|431775648|ref|ZP_19563920.1| S54 family peptidase [Enterococcus faecium E2560]
gi|431778920|ref|ZP_19567125.1| S54 family peptidase [Enterococcus faecium E4389]
gi|431781758|ref|ZP_19569901.1| S54 family peptidase [Enterococcus faecium E6012]
gi|431785858|ref|ZP_19573880.1| S54 family peptidase [Enterococcus faecium E6045]
gi|447912440|ref|YP_007393852.1| GlpG protein (membrane protein of glp regulon) [Enterococcus
faecium NRRL B-2354]
gi|68193952|gb|EAN08519.1| Rhomboid-like protein [Enterococcus faecium DO]
gi|257812786|gb|EEV41544.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
gi|257818851|gb|EEV46179.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
gi|257820148|gb|EEV47296.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
gi|257825604|gb|EEV52230.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
gi|257831063|gb|EEV57670.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
gi|260073979|gb|EEW62303.1| predicted protein [Enterococcus faecium C68]
gi|260077606|gb|EEW65323.1| predicted protein [Enterococcus faecium TC 6]
gi|289161999|gb|EFD09866.1| predicted protein [Enterococcus faecium D344SRF]
gi|291589832|gb|EFF21633.1| integral membrane protein [Enterococcus faecium E1071]
gi|291594879|gb|EFF26244.1| hypothetical protein EfmE1679_1730 [Enterococcus faecium E1679]
gi|291599710|gb|EFF30720.1| integral membrane protein [Enterococcus faecium U0317]
gi|291601879|gb|EFF32127.1| integral membrane protein [Enterococcus faecium E1039]
gi|291606660|gb|EFF36053.1| integral membrane protein [Enterococcus faecium E1162]
gi|364092230|gb|EHM34621.1| integral membrane protein [Enterococcus faecium E4452]
gi|364095003|gb|EHM37105.1| integral membrane protein [Enterococcus faecium E4453]
gi|378938763|gb|AFC63835.1| peptidase, S54 family protein [Enterococcus faecium Aus0004]
gi|404452763|gb|EJZ99915.1| peptidase, S54 family protein [Enterococcus sp. GMD4E]
gi|404456327|gb|EKA03053.1| peptidase, S54 family protein [Enterococcus sp. GMD3E]
gi|404461921|gb|EKA07771.1| peptidase, S54 family protein [Enterococcus sp. GMD2E]
gi|404467899|gb|EKA12955.1| peptidase, S54 family protein [Enterococcus sp. GMD1E]
gi|410734441|gb|EKQ76361.1| S54 family peptidase [Enterococcus sp. GMD5E]
gi|425722980|gb|EKU85871.1| hypothetical protein HMPREF9307_01245 [Enterococcus durans
FB129-CNAB-4]
gi|430440034|gb|ELA50311.1| S54 family peptidase [Enterococcus faecium E0045]
gi|430446087|gb|ELA55786.1| S54 family peptidase [Enterococcus faecium E0164]
gi|430482432|gb|ELA59550.1| S54 family peptidase [Enterococcus faecium E0333]
gi|430484358|gb|ELA61379.1| S54 family peptidase [Enterococcus faecium E0269]
gi|430486411|gb|ELA63247.1| S54 family peptidase [Enterococcus faecium E0679]
gi|430489197|gb|ELA65826.1| S54 family peptidase [Enterococcus faecium E0680]
gi|430491988|gb|ELA68429.1| S54 family peptidase [Enterococcus faecium E0688]
gi|430537559|gb|ELA77889.1| S54 family peptidase [Enterococcus faecium E1185]
gi|430539725|gb|ELA79964.1| S54 family peptidase [Enterococcus faecium E1133]
gi|430545954|gb|ELA85920.1| S54 family peptidase [Enterococcus faecium E1552]
gi|430552264|gb|ELA91999.1| S54 family peptidase [Enterococcus faecium E1573]
gi|430557796|gb|ELA97233.1| S54 family peptidase [Enterococcus faecium E1575]
gi|430558114|gb|ELA97546.1| S54 family peptidase [Enterococcus faecium E1576]
gi|430561368|gb|ELB00636.1| S54 family peptidase [Enterococcus faecium E1578]
gi|430573895|gb|ELB12673.1| S54 family peptidase [Enterococcus faecium E1622]
gi|430575814|gb|ELB14511.1| S54 family peptidase [Enterococcus faecium E1620]
gi|430578675|gb|ELB17227.1| S54 family peptidase [Enterococcus faecium E1623]
gi|430582141|gb|ELB20569.1| S54 family peptidase [Enterococcus faecium E1626]
gi|430583415|gb|ELB21789.1| S54 family peptidase [Enterococcus faecium E1627]
gi|430588496|gb|ELB26688.1| S54 family peptidase [Enterococcus faecium E1634]
gi|430593092|gb|ELB31079.1| S54 family peptidase [Enterococcus faecium E1731]
gi|430600901|gb|ELB38527.1| S54 family peptidase [Enterococcus faecium E1904]
gi|430607361|gb|ELB44681.1| S54 family peptidase [Enterococcus faecium E2071]
gi|430609083|gb|ELB46289.1| S54 family peptidase [Enterococcus faecium E2134]
gi|430610628|gb|ELB47769.1| S54 family peptidase [Enterococcus faecium E2297]
gi|430618789|gb|ELB55630.1| S54 family peptidase [Enterococcus faecium E2883]
gi|430631142|gb|ELB67472.1| S54 family peptidase [Enterococcus faecium E1321]
gi|430631430|gb|ELB67752.1| S54 family peptidase [Enterococcus faecium E4215]
gi|430634404|gb|ELB70530.1| S54 family peptidase [Enterococcus faecium E1644]
gi|430638095|gb|ELB74076.1| S54 family peptidase [Enterococcus faecium E2369]
gi|430642917|gb|ELB78683.1| S54 family peptidase [Enterococcus faecium E2560]
gi|430643401|gb|ELB79145.1| S54 family peptidase [Enterococcus faecium E4389]
gi|430646729|gb|ELB82195.1| S54 family peptidase [Enterococcus faecium E6045]
gi|430648763|gb|ELB84160.1| S54 family peptidase [Enterococcus faecium E6012]
gi|445188149|gb|AGE29791.1| GlpG protein (membrane protein of glp regulon) [Enterococcus
faecium NRRL B-2354]
Length = 232
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 127 YLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAAN 186
YL H F W++ VT F H H N LY G+ +E G++ +L Y+F+G N
Sbjct: 51 YLVH-FNEWWRLVTPIFIHFGLMHFVMNSLILYFMGQQIEAIYGHWRFFLIYMFSGIMGN 109
Query: 187 FVSWLILPKNAVSVGASGAVFGLFA 211
S+ N +S GAS ++FGLF
Sbjct: 110 TASFAFNEANVLSGGASTSIFGLFG 134
>gi|303275255|ref|XP_003056925.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461277|gb|EEH58570.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 392
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 70/143 (48%), Gaps = 14/143 (9%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
Y+ VT H + HL N L+ G ++E + G Y+ +G N++S+ + P
Sbjct: 217 YRLVTPLLLHGSPLHLLVNCMSLHNLGPVIERQFGRDSFVGLYLASGIGGNYLSYKMCPN 276
Query: 196 NAVSVGASGAVFGLF-AISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFI 254
NAV GASGA+FGL A+ V + D L V ++ +++ S G++ F
Sbjct: 277 NAV--GASGAIFGLVGAMGVYLHRHSD---------LFGAVGDRQLQSLLGSVGVNALF- 324
Query: 255 GGYSVQSINHIAHLSGALFGVFL 277
G + I++ AHL G L G F+
Sbjct: 325 -GMMSRRIDNWAHLGGFLTGAFV 346
>gi|21230863|ref|NP_636780.1| hypothetical protein XCC1407 [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66769138|ref|YP_243900.1| hypothetical protein XC_2831 [Xanthomonas campestris pv. campestris
str. 8004]
gi|188992286|ref|YP_001904296.1| Rhomboid family membrane protein [Xanthomonas campestris pv.
campestris str. B100]
gi|384427336|ref|YP_005636694.1| cytoplasmic membrane protein [Xanthomonas campestris pv. raphani
756C]
gi|21112470|gb|AAM40704.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66574470|gb|AAY49880.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris str. 8004]
gi|167734046|emb|CAP52252.1| Putative Rhomboid family membrane protein [Xanthomonas campestris
pv. campestris]
gi|341936437|gb|AEL06576.1| cytoplasmic membrane protein [Xanthomonas campestris pv. raphani
756C]
Length = 202
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 69/155 (44%), Gaps = 34/155 (21%)
Query: 137 QFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNF-GLWLSYIFTGAAANFVSWLILPK 195
+ +T F HA+ HL N+ L+ FG+ +E+ G L+Y A VS ILP
Sbjct: 42 RLITYGFIHADLGHLVFNMITLFFFGRYIEDVMTRLTGSVLTYPLFYLGALIVS--ILPS 99
Query: 196 --------NAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASA 247
N +S+GASGAV + +L+K W IL + I A A
Sbjct: 100 YLKNQKNPNYLSLGASGAVSAVLFAFILLK---PWTIILVLFI-------------PAPA 143
Query: 248 GMSGTFIGGYSV-------QSINHIAHLSGALFGV 275
+ F GYS+ INH AHL+GA FGV
Sbjct: 144 IIYAVFYVGYSLWMDRRGGDRINHSAHLAGAAFGV 178
>gi|418670564|ref|ZP_13231935.1| peptidase, S54 family [Leptospira interrogans serovar Pyrogenes
str. 2006006960]
gi|421121687|ref|ZP_15581980.1| peptidase, S54 family [Leptospira interrogans str. Brem 329]
gi|410345538|gb|EKO96634.1| peptidase, S54 family [Leptospira interrogans str. Brem 329]
gi|410753946|gb|EKR15604.1| peptidase, S54 family [Leptospira interrogans serovar Pyrogenes
str. 2006006960]
Length = 226
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T F HA + HL N F L I VE G + YIF+G + S + P
Sbjct: 86 WWRLLTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLILYIFSGLCGSLASIVWYP 145
Query: 195 KNAVSVGASGAVFGLF-AISVLVKMS 219
N +SVGASGA+FGL+ AI LV M
Sbjct: 146 -NTISVGASGAIFGLYGAILGLVLMD 170
>gi|373108079|ref|ZP_09522370.1| hypothetical protein HMPREF9623_02034 [Stomatobaculum longum]
gi|371650245|gb|EHO15713.1| hypothetical protein HMPREF9623_02034 [Stomatobaculum longum]
Length = 206
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 85/184 (46%), Gaps = 26/184 (14%)
Query: 91 RRKPKKSVNGVFWIILLNL----------GLYVADHVFQVRSIKSLYLYHNFPAWYQFVT 140
RR V W+IL+N+ G+ D + + + + Y++ N W + +T
Sbjct: 5 RRSRNAPVTN--WMILINVLVFLYTALRGGMSDNDILLRYGASYTPYIFENHEYW-RLLT 61
Query: 141 AAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLI---LPKNA 197
AAF H HL +N+ L++ G +E G+ + Y+F+ A+ S + + +
Sbjct: 62 AAFLHFGIRHLGNNMLVLFVTGDSLEHALGHVKYLIFYLFSAVGASAASLAVEVAMGQKV 121
Query: 198 VSVGASGAVFGLFA--ISVLVKMSWDW-----RKIL---EVLILGQFVVEKVMEAAQASA 247
+S GASGAVF + I VL++ S + R +L +++L F E V AA A
Sbjct: 122 LSAGASGAVFAVLGGLIWVLIRNSGRFEEFRIRNLLFFSGMMLLSGFFTEGVDNAAHAGG 181
Query: 248 GMSG 251
+ G
Sbjct: 182 LLVG 185
>gi|392408414|ref|YP_006445021.1| putative membrane protein [Desulfomonile tiedjei DSM 6799]
gi|390621550|gb|AFM22757.1| putative membrane protein [Desulfomonile tiedjei DSM 6799]
Length = 237
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 140 TAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAV- 198
T+ F H W H+ N++FL+IFG +E G+F +L Y+ G A+ + + P++ +
Sbjct: 72 TSIFMHGGWMHIIGNMWFLWIFGDNIEGRLGHFKFFLFYLLCGIGASVIHVMSSPESRIP 131
Query: 199 SVGASGAVFGL 209
++GASGA+ G+
Sbjct: 132 TIGASGAISGV 142
>gi|294614223|ref|ZP_06694142.1| integral membrane protein [Enterococcus faecium E1636]
gi|291592882|gb|EFF24472.1| integral membrane protein [Enterococcus faecium E1636]
Length = 232
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 127 YLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAAN 186
YL H F W++ VT F H H N LY G+ +E G++ +L Y+F+G N
Sbjct: 51 YLVH-FNEWWRLVTPIFIHFGLMHFVMNSLILYFMGQQIEAIYGHWRFFLIYMFSGIMGN 109
Query: 187 FVSWLILPKNAVSVGASGAVFGLFA 211
S+ N +S GAS ++FGLF
Sbjct: 110 TASFAFNEANVLSGGASTSIFGLFG 134
>gi|384419943|ref|YP_005629303.1| peptidase, S54 (rhomboid) family [Xanthomonas oryzae pv. oryzicola
BLS256]
gi|353462856|gb|AEQ97135.1| peptidase, S54 (rhomboid) family [Xanthomonas oryzae pv. oryzicola
BLS256]
Length = 202
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 70/155 (45%), Gaps = 34/155 (21%)
Query: 137 QFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNF-GLWLSYIFTGAAANFVSWLILPK 195
+ VT F HA+ HL N+ L+ FG+++E G L+Y AA VS ILP
Sbjct: 42 RLVTYGFIHADLGHLVFNMVTLFFFGRVIESVMAQLTGSVLTYPLFYLAALVVS--ILPS 99
Query: 196 --------NAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASA 247
N +S+GASGAV + +L++ W IL + I A A
Sbjct: 100 YLKNQKNPNYLSLGASGAVSAVLFAFILLQ---PWTIILVLFI-------------PAPA 143
Query: 248 GMSGTFIGGYSV-------QSINHIAHLSGALFGV 275
+ F GYS+ INH AHL+GA FGV
Sbjct: 144 IIYAVFYVGYSLWMDRRGGDRINHSAHLAGAAFGV 178
>gi|86743118|ref|YP_483518.1| rhomboid-like protein [Frankia sp. CcI3]
gi|86569980|gb|ABD13789.1| Rhomboid-like protein [Frankia sp. CcI3]
Length = 275
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 55/98 (56%), Gaps = 4/98 (4%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGA-AANFVSWLIL 193
+Y+ +TAAF HA H+ N++ LY+ G +E G +L+ GA N +S+++
Sbjct: 113 YYRLLTAAFLHAGVLHILFNMYALYLLGFQLEAILGR-ARYLALFVAGALGGNTLSYVLG 171
Query: 194 PKNAVSVGASGAVFGLFAISVLV--KMSWDWRKILEVL 229
VSVGAS A+F FA ++ ++ D R+IL VL
Sbjct: 172 DGFTVSVGASTAIFAFFAAYYIIARRLRVDSRQILIVL 209
>gi|402489966|ref|ZP_10836759.1| rhomboid family protein [Rhizobium sp. CCGE 510]
gi|401811305|gb|EJT03674.1| rhomboid family protein [Rhizobium sp. CCGE 510]
Length = 261
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 133 PAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLI 192
P ++T AF H+ + HL+SN+ FL++FG VE+ G+ + Y+ AA L+
Sbjct: 70 PEPLTYLTYAFVHSGFWHLASNMIFLWVFGDNVEDAMGHLRFLIFYVVCAAAGALCHGLL 129
Query: 193 -LPKNAVSVGASGAVFGLFAISVLV 216
+ A VGASGA+ G+ A V++
Sbjct: 130 AMASQAALVGASGAISGVVAAYVML 154
>gi|300694566|ref|YP_003750539.1| rhomboid protease [Ralstonia solanacearum PSI07]
gi|299076603|emb|CBJ35939.1| putative rhomboid protease [Ralstonia solanacearum PSI07]
Length = 543
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 6/117 (5%)
Query: 97 SVNGVFWIILLNLGLYV----ADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLS 152
++N + W+ L LG + D +F++ + + H W++ ++A F HA HL+
Sbjct: 187 ALNVLVWLATLGLGGNLLQTPIDVLFKLGGNAAFEVQHG--EWWRLLSATFLHAGVLHLA 244
Query: 153 SNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGL 209
N+ LY G VE G L Y+ G + +S ++A+ VGASGAVFG+
Sbjct: 245 INVIGLYATGIAVERIYGPAAYLLIYLGAGLLGSALSLSFAAQHAIGVGASGAVFGV 301
>gi|254464363|ref|ZP_05077774.1| peptidase, S54 (rhomboid) family [Rhodobacterales bacterium Y4I]
gi|206685271|gb|EDZ45753.1| peptidase, S54 (rhomboid) family [Rhodobacterales bacterium Y4I]
Length = 256
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
Query: 140 TAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAV- 198
T+ F H HL N+ FL+IFG +EEE G+ L Y+ +G A + + P + V
Sbjct: 66 TSLFIHGGLMHLGGNMLFLWIFGDNLEEEMGHLPFLLFYLLSGLGAGLIHVMSAPGSMVP 125
Query: 199 SVGASGAVFGLFAISVLV 216
+VGASGA+ G+ +L+
Sbjct: 126 TVGASGAIAGVMGGYLLM 143
>gi|383821590|ref|ZP_09976832.1| hypothetical protein MPHLEI_19664 [Mycobacterium phlei RIVM601174]
gi|383332932|gb|EID11395.1| hypothetical protein MPHLEI_19664 [Mycobacterium phlei RIVM601174]
Length = 248
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+Y+ +T+AF H H+ N++ LY+ G +E G Y + + + +L+
Sbjct: 75 FYRLLTSAFLHYGLTHILFNMWALYVVGPALEAALGRLRFVGLYALSALGGSVLVYLLSA 134
Query: 195 KNAVSVGASGAVFGLFAISVLV--KMSWDWRKILEVLIL 231
NA + GASGA+FGLF + +V +++ D R + ++++
Sbjct: 135 PNAATAGASGAIFGLFGATFVVGKRLNMDVRWVAAIIVI 173
>gi|434399081|ref|YP_007133085.1| Rhomboid family protein [Stanieria cyanosphaera PCC 7437]
gi|428270178|gb|AFZ36119.1| Rhomboid family protein [Stanieria cyanosphaera PCC 7437]
Length = 208
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ ++A F H W HL +N+ LY G+LVE G + Y F+G A F+ L
Sbjct: 55 WWRLLSANFLHFGWLHLITNMAALYFLGRLVEASFGLIRYLIVYFFSGIGAMFLFTLFTL 114
Query: 195 K----NAVSVGASGAVFGLFAISVLVKMSWDWRK 224
K N V VGAS A+ GL S+L W K
Sbjct: 115 KTGEENVVLVGASAAIMGLIG-SILAIFLQIWFK 147
>gi|395242536|ref|ZP_10419533.1| Putative membrane protein [Lactobacillus pasteurii CRBIP 24.76]
gi|394480268|emb|CCI85773.1| Putative membrane protein [Lactobacillus pasteurii CRBIP 24.76]
Length = 240
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ TA F H HL SN ++ G E G++ W+ Y+ +G N +S+
Sbjct: 58 WWRLFTAQFLHIGIMHLVSNAVMIFYLGNYFESIIGHWRFWVIYLLSGVGGNLMSFAFGS 117
Query: 195 KNAVSVGASGAVFGLFAISVLVK 217
N++S GAS A+FGL + +
Sbjct: 118 DNSLSAGASTALFGLLGAVIAIS 140
>gi|325913985|ref|ZP_08176341.1| uncharacterized membrane protein [Xanthomonas vesicatoria ATCC
35937]
gi|325539754|gb|EGD11394.1| uncharacterized membrane protein [Xanthomonas vesicatoria ATCC
35937]
Length = 202
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 70/155 (45%), Gaps = 34/155 (21%)
Query: 137 QFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNF-GLWLSYIFTGAAANFVSWLILPK 195
+ VT F HA+ HL N+ L+ FG+++E G L+Y AA VS ILP
Sbjct: 42 RLVTYGFIHADVGHLVFNMITLFFFGRVIENVMTQLTGSMLTYPLFYLAALVVS--ILPS 99
Query: 196 --------NAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASA 247
N +S+GASGAV + +L++ W IL + I A A
Sbjct: 100 YLKNQNNPNYLSLGASGAVSAVLFAFILLQ---PWTIILVLFI-------------PAPA 143
Query: 248 GMSGTFIGGYSV-------QSINHIAHLSGALFGV 275
+ F GYS+ INH AHL+GA FGV
Sbjct: 144 IIYAVFYVGYSLWMDRRGGDRINHSAHLAGAAFGV 178
>gi|294626557|ref|ZP_06705155.1| Rhomboid family membrane protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|294664949|ref|ZP_06730262.1| Rhomboid family membrane protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|292599124|gb|EFF43263.1| Rhomboid family membrane protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292605282|gb|EFF48620.1| Rhomboid family membrane protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 202
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 70/155 (45%), Gaps = 34/155 (21%)
Query: 137 QFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNF-GLWLSYIFTGAAANFVSWLILPK 195
+ VT F HA+ HL N+ L+ FG+++E G L+Y AA VS ILP
Sbjct: 42 RLVTYGFIHADLGHLIFNMITLFFFGRVIENVMAQLTGSVLTYPLFYLAALVVS--ILPS 99
Query: 196 --------NAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASA 247
N +S+GASGAV + +L++ W IL + I A A
Sbjct: 100 YLKNQKNPNYLSLGASGAVSAVLFAFILLQ---PWTIILVLFI-------------PAPA 143
Query: 248 GMSGTFIGGYSV-------QSINHIAHLSGALFGV 275
+ F GYS+ INH AHL+GA FGV
Sbjct: 144 ILYALFYVGYSLWMDRRGGDRINHSAHLAGAAFGV 178
>gi|86359374|ref|YP_471266.1| hypothetical protein RHE_CH03791 [Rhizobium etli CFN 42]
gi|86283476|gb|ABC92539.1| hypothetical conserved protein [Rhizobium etli CFN 42]
Length = 260
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 133 PAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLI 192
P ++T AF HA + HL+SN+ FL++FG VE+ G+ L Y+ AA L+
Sbjct: 70 PEPLTYLTYAFIHAGFWHLASNMVFLWVFGDNVEDAMGHMRFLLFYLLCAAAGALCHGLL 129
Query: 193 LPKN-AVSVGASGAVFGLFAISVLV 216
+ A VGASGA+ G+ A V++
Sbjct: 130 TTTSEAPLVGASGAISGVVAAYVML 154
>gi|332798289|ref|YP_004459788.1| peptidase S54, rhomboid domain-containing protein
[Tepidanaerobacter acetatoxydans Re1]
gi|438001219|ref|YP_007270962.1| FIG056164: rhomboid family serine protease [Tepidanaerobacter
acetatoxydans Re1]
gi|332696024|gb|AEE90481.1| Peptidase S54, rhomboid domain protein [Tepidanaerobacter
acetatoxydans Re1]
gi|432178013|emb|CCP24986.1| FIG056164: rhomboid family serine protease [Tepidanaerobacter
acetatoxydans Re1]
Length = 220
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 140 TAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP-KNAV 198
T+ F H N++HL SN++ L++FG VE+ G + YI TG A F ++ P N
Sbjct: 68 TSMFLHGNFSHLVSNMWSLWLFGDNVEDRMGPIRFSIFYILTGLIAGFAHFIFNPFLNVP 127
Query: 199 SVGASGAVFGL 209
+VGASGA+ G+
Sbjct: 128 TVGASGAIAGV 138
>gi|217972131|ref|YP_002356882.1| rhomboid family protein [Shewanella baltica OS223]
gi|217497266|gb|ACK45459.1| Rhomboid family protein [Shewanella baltica OS223]
Length = 360
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 66/132 (50%), Gaps = 10/132 (7%)
Query: 93 KPKKSVNGVFWIILLNLGLYVA--------DHVFQVRSIKSLYLYHNFPAWYQFVTAAFC 144
KPKK + ++ LN+ ++V D+VF ++++ + H W F + F
Sbjct: 146 KPKKPPVVTYLLLALNILVFVGYGFDLDMTDNVFARFALRADDVMHGSHVWTLF-SHMFL 204
Query: 145 HANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP-KNAVSVGAS 203
H + HL+ N++FLY+ G +E+ G ++ Y+ G AA P N VGAS
Sbjct: 205 HGDLMHLAGNMYFLYVVGDNLEDALGRARFFVLYLVCGFAAAATQIAADPGSNIYMVGAS 264
Query: 204 GAVFGLFAISVL 215
GA+ GLF + ++
Sbjct: 265 GAIAGLFGMYLM 276
>gi|294827819|ref|NP_711400.2| intramembrane serine protease [Leptospira interrogans serovar Lai
str. 56601]
gi|386073456|ref|YP_005987773.1| intramembrane serine protease [Leptospira interrogans serovar Lai
str. IPAV]
gi|417771211|ref|ZP_12419107.1| peptidase, S54 family [Leptospira interrogans serovar Pomona str.
Pomona]
gi|417785772|ref|ZP_12433474.1| peptidase, S54 family [Leptospira interrogans str. C10069]
gi|418680327|ref|ZP_13241577.1| peptidase, S54 family [Leptospira interrogans serovar Pomona str.
Kennewicki LC82-25]
gi|418700759|ref|ZP_13261701.1| peptidase, S54 family [Leptospira interrogans serovar Bataviae str.
L1111]
gi|418702618|ref|ZP_13263517.1| peptidase, S54 family [Leptospira interrogans serovar Hebdomadis
str. R499]
gi|418714242|ref|ZP_13274802.1| peptidase, S54 family [Leptospira interrogans str. UI 08452]
gi|418727683|ref|ZP_13286271.1| peptidase, S54 family [Leptospira interrogans str. UI 12621]
gi|421084672|ref|ZP_15545528.1| peptidase, S54 family [Leptospira santarosai str. HAI1594]
gi|421103086|ref|ZP_15563686.1| peptidase, S54 family [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|421115025|ref|ZP_15575439.1| peptidase, S54 family [Leptospira interrogans serovar Canicola str.
Fiocruz LV133]
gi|421127321|ref|ZP_15587545.1| peptidase, S54 family [Leptospira interrogans serovar Grippotyphosa
str. 2006006986]
gi|421134042|ref|ZP_15594184.1| peptidase, S54 family [Leptospira interrogans serovar Grippotyphosa
str. Andaman]
gi|293385664|gb|AAN48418.2| intramembrane serine protease [Leptospira interrogans serovar Lai
str. 56601]
gi|353457245|gb|AER01790.1| intramembrane serine protease [Leptospira interrogans serovar Lai
str. IPAV]
gi|400328041|gb|EJO80280.1| peptidase, S54 family [Leptospira interrogans serovar Pomona str.
Kennewicki LC82-25]
gi|409946836|gb|EKN96844.1| peptidase, S54 family [Leptospira interrogans serovar Pomona str.
Pomona]
gi|409951113|gb|EKO05630.1| peptidase, S54 family [Leptospira interrogans str. C10069]
gi|409959041|gb|EKO22818.1| peptidase, S54 family [Leptospira interrogans str. UI 12621]
gi|410013746|gb|EKO71823.1| peptidase, S54 family [Leptospira interrogans serovar Canicola str.
Fiocruz LV133]
gi|410021780|gb|EKO88563.1| peptidase, S54 family [Leptospira interrogans serovar Grippotyphosa
str. Andaman]
gi|410366832|gb|EKP22220.1| peptidase, S54 family [Leptospira interrogans serovar
Icterohaemorrhagiae str. Verdun LP]
gi|410432622|gb|EKP76977.1| peptidase, S54 family [Leptospira santarosai str. HAI1594]
gi|410435411|gb|EKP84543.1| peptidase, S54 family [Leptospira interrogans serovar Grippotyphosa
str. 2006006986]
gi|410760660|gb|EKR26856.1| peptidase, S54 family [Leptospira interrogans serovar Bataviae str.
L1111]
gi|410767669|gb|EKR38337.1| peptidase, S54 family [Leptospira interrogans serovar Hebdomadis
str. R499]
gi|410789185|gb|EKR82887.1| peptidase, S54 family [Leptospira interrogans str. UI 08452]
gi|455670036|gb|EMF35090.1| peptidase, S54 family [Leptospira interrogans serovar Pomona str.
Fox 32256]
gi|456984972|gb|EMG20899.1| peptidase, S54 family [Leptospira interrogans serovar Copenhageni
str. LT2050]
Length = 272
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 88/189 (46%), Gaps = 30/189 (15%)
Query: 98 VNGVFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHA--NWNHLSSNL 155
+NG + + L L V D++ + S + H F W QF+T AF H+ N+ H+ N+
Sbjct: 22 LNGSIFAVQLLLSWTVGDYLTLYFGMTSDMITHRFFIW-QFLTYAFLHSVQNFFHILFNM 80
Query: 156 FFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP---KNAVSVGASGAVFGLFAI 212
F L++FG ++E G+ Y+F+ F W++ +GASG ++GL
Sbjct: 81 FSLWMFGSVLESYWGSRNFLKFYLFSCFMGGFFPWILHNVGFHQGTIIGASGGIYGL--- 137
Query: 213 SVLVKMSWDWRKILEVLILGQF-------VVEKVMEAAQASAGMSGTFIGGYSVQSINHI 265
L+ + W E+L +G F VV ++ A + +G +I H+
Sbjct: 138 --LIAFALIWPN-QELLFMGFFPLKAKYMVVILMLIIAFSGSG-----------SNIAHM 183
Query: 266 AHLSGALFG 274
AHL GA+ G
Sbjct: 184 AHLGGAIGG 192
>gi|160874070|ref|YP_001553386.1| rhomboid family protein [Shewanella baltica OS195]
gi|378707313|ref|YP_005272207.1| rhomboid family protein [Shewanella baltica OS678]
gi|418024298|ref|ZP_12663281.1| Peptidase S54, rhomboid domain protein [Shewanella baltica OS625]
gi|160859592|gb|ABX48126.1| Rhomboid family protein [Shewanella baltica OS195]
gi|315266302|gb|ADT93155.1| Rhomboid family protein [Shewanella baltica OS678]
gi|353536258|gb|EHC05817.1| Peptidase S54, rhomboid domain protein [Shewanella baltica OS625]
Length = 360
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 66/132 (50%), Gaps = 10/132 (7%)
Query: 93 KPKKSVNGVFWIILLNLGLYVA--------DHVFQVRSIKSLYLYHNFPAWYQFVTAAFC 144
KPKK + ++ LN+ ++V D+VF ++++ + H W F + F
Sbjct: 146 KPKKPPVVTYLLLALNILVFVGYGFDLDMTDNVFARFALRADDVMHGSHVWTLF-SHMFL 204
Query: 145 HANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP-KNAVSVGAS 203
H + HL+ N++FLY+ G +E+ G ++ Y+ G AA P N VGAS
Sbjct: 205 HGDLMHLAGNMYFLYVVGDNLEDALGRARFFVLYLVCGFAAAATQIAADPGSNIYMVGAS 264
Query: 204 GAVFGLFAISVL 215
GA+ GLF + ++
Sbjct: 265 GAIAGLFGMYLM 276
>gi|119773874|ref|YP_926614.1| hypothetical protein Sama_0736 [Shewanella amazonensis SB2B]
gi|119766374|gb|ABL98944.1| Uncharacterized membrane protein [Shewanella amazonensis SB2B]
Length = 362
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 16/135 (11%)
Query: 93 KPKKSVNGVFWIILLNL---GLY-----VADHVFQVRSIKSLYLYHNFPAWYQFVTAAFC 144
KPK +W++ LNL G+Y + D +F+ ++ + H W F + F
Sbjct: 148 KPKTKPVVTWWLLGLNLVIFGIYGFDLSMIDPIFEQFALVPNQVMHGSHVWTLF-SHMFL 206
Query: 145 HANWNHLSSNLFFLYIFGKLVEEEEGN---FGLWLSYIFTGAAANFVSWLILPKNAV-SV 200
H + HL+ N++FLY+ G +E+ G GL+L AAA +S P + + V
Sbjct: 207 HGDIIHLAGNMYFLYVVGDNLEDALGRARFLGLYLVCGLAAAAAQIIS---EPGSDIYMV 263
Query: 201 GASGAVFGLFAISVL 215
GASGA+ GLF + +L
Sbjct: 264 GASGAIAGLFGMYLL 278
>gi|415885504|ref|ZP_11547432.1| Serine protease of Rhomboid family [Bacillus methanolicus MGA3]
gi|387591173|gb|EIJ83492.1| Serine protease of Rhomboid family [Bacillus methanolicus MGA3]
Length = 518
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 131 NFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSW 190
N W++F T F H HL N LY G +VE GN L Y+ G A + S+
Sbjct: 223 NEGEWWRFFTPIFLHIGLLHLLMNTLALYYLGTVVERIYGNVRFMLIYLAAGFAGSLASF 282
Query: 191 LILPKNAVSVGASGAVFGLFA 211
+ P ++S GASGA+FG F
Sbjct: 283 VFSP--SLSAGASGAIFGCFG 301
>gi|431412586|ref|ZP_19512021.1| S54 family peptidase [Enterococcus faecium E1630]
gi|431759476|ref|ZP_19548089.1| S54 family peptidase [Enterococcus faecium E3346]
gi|430589541|gb|ELB27669.1| S54 family peptidase [Enterococcus faecium E1630]
gi|430625986|gb|ELB62579.1| S54 family peptidase [Enterococcus faecium E3346]
Length = 232
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Query: 127 YLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAAN 186
YL H F W++ VT F H H N LY G+ +E G++ +L Y+F+G N
Sbjct: 51 YLVH-FNEWWRLVTPIFIHFGVMHFVMNSLILYFMGQQIEAIYGHWRFFLIYMFSGIMGN 109
Query: 187 FVSWLILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLI 230
S+ N +S GAS ++FGLF ++ + + ++ L+
Sbjct: 110 TASFAFNEANVLSGGASTSIFGLFGALFILGFHFKYNTAIQQLV 153
>gi|314937472|ref|ZP_07844805.1| peptidase, S54 family protein [Enterococcus faecium TX0133a04]
gi|314942131|ref|ZP_07848985.1| peptidase, S54 family protein [Enterococcus faecium TX0133C]
gi|314947529|ref|ZP_07850944.1| peptidase, S54 family protein [Enterococcus faecium TX0082]
gi|314951516|ref|ZP_07854565.1| peptidase, S54 family protein [Enterococcus faecium TX0133A]
gi|314992606|ref|ZP_07858024.1| peptidase, S54 family protein [Enterococcus faecium TX0133B]
gi|314995459|ref|ZP_07860559.1| peptidase, S54 family protein [Enterococcus faecium TX0133a01]
gi|389868892|ref|YP_006376315.1| S54 family peptidase [Enterococcus faecium DO]
gi|424788145|ref|ZP_18214906.1| peptidase, S54 family [Enterococcus faecium V689]
gi|424797226|ref|ZP_18222844.1| peptidase, S54 family [Enterococcus faecium S447]
gi|424834719|ref|ZP_18259416.1| peptidase, S54 family [Enterococcus faecium R501]
gi|424854943|ref|ZP_18279284.1| peptidase, S54 family [Enterococcus faecium R499]
gi|424901358|ref|ZP_18324875.1| peptidase, S54 family [Enterococcus faecium R497]
gi|424950948|ref|ZP_18366086.1| peptidase, S54 family [Enterococcus faecium R496]
gi|424954911|ref|ZP_18369781.1| peptidase, S54 family [Enterococcus faecium R494]
gi|424958027|ref|ZP_18372707.1| peptidase, S54 family [Enterococcus faecium R446]
gi|424959269|ref|ZP_18373867.1| peptidase, S54 family [Enterococcus faecium P1986]
gi|424964191|ref|ZP_18378308.1| peptidase, S54 family [Enterococcus faecium P1190]
gi|424968837|ref|ZP_18382435.1| peptidase, S54 family [Enterococcus faecium P1140]
gi|424969958|ref|ZP_18383500.1| peptidase, S54 family [Enterococcus faecium P1139]
gi|424973590|ref|ZP_18386863.1| peptidase, S54 family [Enterococcus faecium P1137]
gi|424976843|ref|ZP_18389907.1| peptidase, S54 family [Enterococcus faecium P1123]
gi|424980661|ref|ZP_18393441.1| peptidase, S54 family [Enterococcus faecium ERV99]
gi|424983494|ref|ZP_18396077.1| peptidase, S54 family [Enterococcus faecium ERV69]
gi|424987151|ref|ZP_18399541.1| peptidase, S54 family [Enterococcus faecium ERV38]
gi|424990088|ref|ZP_18402319.1| peptidase, S54 family [Enterococcus faecium ERV26]
gi|424993747|ref|ZP_18405723.1| peptidase, S54 family [Enterococcus faecium ERV168]
gi|424998007|ref|ZP_18409725.1| peptidase, S54 family [Enterococcus faecium ERV165]
gi|425000265|ref|ZP_18411839.1| peptidase, S54 family [Enterococcus faecium ERV161]
gi|425003083|ref|ZP_18414473.1| peptidase, S54 family [Enterococcus faecium ERV102]
gi|425008016|ref|ZP_18419116.1| peptidase, S54 family [Enterococcus faecium ERV1]
gi|425011141|ref|ZP_18422055.1| peptidase, S54 family [Enterococcus faecium E422]
gi|425014985|ref|ZP_18425629.1| peptidase, S54 family [Enterococcus faecium E417]
gi|425018773|ref|ZP_18429177.1| peptidase, S54 family [Enterococcus faecium C621]
gi|425021150|ref|ZP_18431426.1| peptidase, S54 family [Enterococcus faecium C497]
gi|425023525|ref|ZP_18433641.1| peptidase, S54 family [Enterococcus faecium C1904]
gi|425033828|ref|ZP_18438766.1| peptidase, S54 family [Enterococcus faecium 515]
gi|425034295|ref|ZP_18439198.1| peptidase, S54 family [Enterococcus faecium 514]
gi|425038841|ref|ZP_18443427.1| peptidase, S54 family [Enterococcus faecium 513]
gi|425041294|ref|ZP_18445698.1| peptidase, S54 family [Enterococcus faecium 511]
gi|425047176|ref|ZP_18451151.1| peptidase, S54 family [Enterococcus faecium 510]
gi|425047543|ref|ZP_18451492.1| peptidase, S54 family [Enterococcus faecium 509]
gi|425051726|ref|ZP_18455375.1| peptidase, S54 family [Enterococcus faecium 506]
gi|425059543|ref|ZP_18462879.1| peptidase, S54 family [Enterococcus faecium 504]
gi|425061272|ref|ZP_18464521.1| peptidase, S54 family [Enterococcus faecium 503]
gi|313590293|gb|EFR69138.1| peptidase, S54 family protein [Enterococcus faecium TX0133a01]
gi|313592898|gb|EFR71743.1| peptidase, S54 family protein [Enterococcus faecium TX0133B]
gi|313596356|gb|EFR75201.1| peptidase, S54 family protein [Enterococcus faecium TX0133A]
gi|313599054|gb|EFR77899.1| peptidase, S54 family protein [Enterococcus faecium TX0133C]
gi|313643113|gb|EFS07693.1| peptidase, S54 family protein [Enterococcus faecium TX0133a04]
gi|313646079|gb|EFS10659.1| peptidase, S54 family protein [Enterococcus faecium TX0082]
gi|388534141|gb|AFK59333.1| S54 family peptidase [Enterococcus faecium DO]
gi|402921525|gb|EJX41965.1| peptidase, S54 family [Enterococcus faecium S447]
gi|402922053|gb|EJX42460.1| peptidase, S54 family [Enterococcus faecium R501]
gi|402923161|gb|EJX43479.1| peptidase, S54 family [Enterococcus faecium V689]
gi|402930620|gb|EJX50256.1| peptidase, S54 family [Enterococcus faecium R497]
gi|402931957|gb|EJX51504.1| peptidase, S54 family [Enterococcus faecium R496]
gi|402932028|gb|EJX51566.1| peptidase, S54 family [Enterococcus faecium R499]
gi|402935349|gb|EJX54605.1| peptidase, S54 family [Enterococcus faecium R494]
gi|402941861|gb|EJX60530.1| peptidase, S54 family [Enterococcus faecium R446]
gi|402947297|gb|EJX65517.1| peptidase, S54 family [Enterococcus faecium P1190]
gi|402950480|gb|EJX68478.1| peptidase, S54 family [Enterococcus faecium P1140]
gi|402951035|gb|EJX68992.1| peptidase, S54 family [Enterococcus faecium P1986]
gi|402958278|gb|EJX75600.1| peptidase, S54 family [Enterococcus faecium P1137]
gi|402962837|gb|EJX79744.1| peptidase, S54 family [Enterococcus faecium P1139]
gi|402965860|gb|EJX82542.1| peptidase, S54 family [Enterococcus faecium ERV99]
gi|402968286|gb|EJX84774.1| peptidase, S54 family [Enterococcus faecium P1123]
gi|402971363|gb|EJX87637.1| peptidase, S54 family [Enterococcus faecium ERV69]
gi|402975043|gb|EJX91030.1| peptidase, S54 family [Enterococcus faecium ERV38]
gi|402980429|gb|EJX96038.1| peptidase, S54 family [Enterococcus faecium ERV26]
gi|402981790|gb|EJX97301.1| peptidase, S54 family [Enterococcus faecium ERV168]
gi|402984436|gb|EJX99745.1| peptidase, S54 family [Enterococcus faecium ERV165]
gi|402989659|gb|EJY04575.1| peptidase, S54 family [Enterococcus faecium ERV161]
gi|402992779|gb|EJY07447.1| peptidase, S54 family [Enterococcus faecium ERV102]
gi|402993690|gb|EJY08281.1| peptidase, S54 family [Enterococcus faecium ERV1]
gi|402997135|gb|EJY11484.1| peptidase, S54 family [Enterococcus faecium E417]
gi|402997799|gb|EJY12101.1| peptidase, S54 family [Enterococcus faecium E422]
gi|403000456|gb|EJY14575.1| peptidase, S54 family [Enterococcus faecium C621]
gi|403007658|gb|EJY21214.1| peptidase, S54 family [Enterococcus faecium C497]
gi|403008233|gb|EJY21755.1| peptidase, S54 family [Enterococcus faecium 515]
gi|403009623|gb|EJY23053.1| peptidase, S54 family [Enterococcus faecium C1904]
gi|403018441|gb|EJY31125.1| peptidase, S54 family [Enterococcus faecium 513]
gi|403020858|gb|EJY33355.1| peptidase, S54 family [Enterococcus faecium 514]
gi|403022424|gb|EJY34791.1| peptidase, S54 family [Enterococcus faecium 510]
gi|403026198|gb|EJY38202.1| peptidase, S54 family [Enterococcus faecium 511]
gi|403033405|gb|EJY44908.1| peptidase, S54 family [Enterococcus faecium 509]
gi|403034691|gb|EJY46121.1| peptidase, S54 family [Enterococcus faecium 504]
gi|403037019|gb|EJY48346.1| peptidase, S54 family [Enterococcus faecium 506]
gi|403041786|gb|EJY52779.1| peptidase, S54 family [Enterococcus faecium 503]
Length = 238
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 127 YLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAAN 186
YL H F W++ VT F H H N LY G+ +E G++ +L Y+F+G N
Sbjct: 57 YLVH-FNEWWRLVTPIFIHFGLMHFVMNSLILYFMGQQIEAIYGHWRFFLIYMFSGIMGN 115
Query: 187 FVSWLILPKNAVSVGASGAVFGLFA 211
S+ N +S GAS ++FGLF
Sbjct: 116 TASFAFNEANVLSGGASTSIFGLFG 140
>gi|345000844|ref|YP_004803698.1| Rhomboid family protein [Streptomyces sp. SirexAA-E]
gi|344316470|gb|AEN11158.1| Rhomboid family protein [Streptomyces sp. SirexAA-E]
Length = 299
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ T+ F H H++ N+ L+ G +E G Y+ +G A + +++ +
Sbjct: 135 WYRLFTSMFLHQEVWHIAFNMLGLWWLGGPLEAALGRVRYLALYLLSGLAGSALTYAVSD 194
Query: 195 KNAVSVGASGAVFGLFAISVLV--KMSWDWRKILEVLIL 231
S+GASGAVFGL + ++ +M++D R ++ +L++
Sbjct: 195 PAQGSLGASGAVFGLLGATAVLMRRMNYDMRPVIALLVV 233
>gi|257898204|ref|ZP_05677857.1| conserved hypothetical protein [Enterococcus faecium Com15]
gi|293570647|ref|ZP_06681698.1| integral membrane protein, Rhomboid family [Enterococcus faecium
E980]
gi|430841528|ref|ZP_19459447.1| S54 family peptidase [Enterococcus faecium E1007]
gi|431073211|ref|ZP_19494755.1| S54 family peptidase [Enterococcus faecium E1604]
gi|431586112|ref|ZP_19520627.1| S54 family peptidase [Enterococcus faecium E1861]
gi|431737438|ref|ZP_19526392.1| S54 family peptidase [Enterococcus faecium E1972]
gi|431739879|ref|ZP_19528798.1| S54 family peptidase [Enterococcus faecium E2039]
gi|257836116|gb|EEV61190.1| conserved hypothetical protein [Enterococcus faecium Com15]
gi|291609318|gb|EFF38589.1| integral membrane protein, Rhomboid family [Enterococcus faecium
E980]
gi|430494304|gb|ELA70554.1| S54 family peptidase [Enterococcus faecium E1007]
gi|430566783|gb|ELB05879.1| S54 family peptidase [Enterococcus faecium E1604]
gi|430593290|gb|ELB31276.1| S54 family peptidase [Enterococcus faecium E1861]
gi|430599095|gb|ELB36811.1| S54 family peptidase [Enterococcus faecium E1972]
gi|430604006|gb|ELB41506.1| S54 family peptidase [Enterococcus faecium E2039]
Length = 232
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Query: 127 YLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAAN 186
YL H F W++ VT F H H N LY G+ +E G++ +L Y+F+G N
Sbjct: 51 YLVH-FNEWWRLVTPIFIHFGVMHFVMNSLILYFMGQQIEAIYGHWRFFLIYMFSGIMGN 109
Query: 187 FVSWLILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLI 230
S+ N +S GAS ++FGLF ++ + + ++ L+
Sbjct: 110 TASFAFNEANVLSGGASTSIFGLFGALFILGFHFKYNTAIQQLV 153
>gi|410458664|ref|ZP_11312422.1| hypothetical protein BAZO_05780 [Bacillus azotoformans LMG 9581]
gi|409931259|gb|EKN68245.1| hypothetical protein BAZO_05780 [Bacillus azotoformans LMG 9581]
Length = 198
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 74/153 (48%), Gaps = 14/153 (9%)
Query: 122 SIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFT 181
I S Y +N W + +T F H+++ H+ N F L IFG +E G ++Y+ +
Sbjct: 45 GIGSNYDVYNGEYW-RLLTPIFLHSSFGHMLFNSFSLAIFGPALERMLGKPIFIITYLLS 103
Query: 182 GAAANFVSWLILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVME 241
G AN ++ + P N +G+S A+FGLF + + + + +RK L + Q ++ ++
Sbjct: 104 GVLANIGTYFVAPINYYHLGSSSAIFGLFGVYLYMVI---YRKDLIDRMNSQIIISILV- 159
Query: 242 AAQASAGMSGTFIGGYSVQSINHIAHLSGALFG 274
GM TF IN AH+ G + G
Sbjct: 160 -----IGMVMTFFR----SDINIYAHIFGLIGG 183
>gi|430822659|ref|ZP_19441236.1| S54 family peptidase [Enterococcus faecium E0120]
gi|430865218|ref|ZP_19480976.1| S54 family peptidase [Enterococcus faecium E1574]
gi|430442969|gb|ELA52976.1| S54 family peptidase [Enterococcus faecium E0120]
gi|430553296|gb|ELA92997.1| S54 family peptidase [Enterococcus faecium E1574]
Length = 232
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 127 YLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAAN 186
YL H F W++ VT F H H N LY G+ +E G++ +L Y+F+G N
Sbjct: 51 YLVH-FNEWWRLVTPIFIHFGLMHFVMNSLILYFMGQQIEAIYGHWRFFLIYMFSGIMGN 109
Query: 187 FVSWLILPKNAVSVGASGAVFGLFA 211
S+ N +S GAS ++FGLF
Sbjct: 110 TASFAFNEANVLSGGASTSIFGLFG 134
>gi|257887050|ref|ZP_05666703.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
gi|257895615|ref|ZP_05675268.1| conserved hypothetical protein [Enterococcus faecium Com12]
gi|293377774|ref|ZP_06623963.1| peptidase, S54 (rhomboid) family protein [Enterococcus faecium
PC4.1]
gi|431033159|ref|ZP_19491005.1| S54 family peptidase [Enterococcus faecium E1590]
gi|431108247|ref|ZP_19497398.1| S54 family peptidase [Enterococcus faecium E1613]
gi|431752138|ref|ZP_19540823.1| S54 family peptidase [Enterococcus faecium E2620]
gi|431756962|ref|ZP_19545594.1| S54 family peptidase [Enterococcus faecium E3083]
gi|431762189|ref|ZP_19550751.1| S54 family peptidase [Enterococcus faecium E3548]
gi|257823104|gb|EEV50036.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
gi|257832180|gb|EEV58601.1| conserved hypothetical protein [Enterococcus faecium Com12]
gi|292643774|gb|EFF61895.1| peptidase, S54 (rhomboid) family protein [Enterococcus faecium
PC4.1]
gi|430564260|gb|ELB03444.1| S54 family peptidase [Enterococcus faecium E1590]
gi|430569371|gb|ELB08375.1| S54 family peptidase [Enterococcus faecium E1613]
gi|430614202|gb|ELB51191.1| S54 family peptidase [Enterococcus faecium E2620]
gi|430620816|gb|ELB57618.1| S54 family peptidase [Enterococcus faecium E3083]
gi|430624881|gb|ELB61531.1| S54 family peptidase [Enterococcus faecium E3548]
Length = 232
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Query: 127 YLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAAN 186
YL H F W++ VT F H H N LY G+ +E G++ +L Y+F+G N
Sbjct: 51 YLVH-FNEWWRLVTPIFIHFGVMHFVMNSLILYFMGQQIEAIYGHWRFFLIYMFSGIMGN 109
Query: 187 FVSWLILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLI 230
S+ N +S GAS ++FGLF ++ + + ++ L+
Sbjct: 110 TASFAFNEANVLSGGASTSIFGLFGALFILGFHFKYNTAIQQLV 153
>gi|256751158|ref|ZP_05492039.1| Rhomboid family protein [Thermoanaerobacter ethanolicus CCSD1]
gi|256749883|gb|EEU62906.1| Rhomboid family protein [Thermoanaerobacter ethanolicus CCSD1]
Length = 227
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 70/150 (46%), Gaps = 8/150 (5%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
Y F+T+ F H N HL SN++ L++FG VE+ G+ + Y+ +G A P
Sbjct: 69 YPFITSMFLHGNIFHLISNMWILWLFGDNVEDRMGHIKFLIFYLLSGVIAGVFHMAFNPI 128
Query: 196 NAVS-VGASGAVFG-------LFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASA 247
+ V VGASGA+ G LF + ++ + + + L + V + Q +
Sbjct: 129 SPVPVVGASGAIAGVMGAYFVLFPSARIITLVPSFFLVPVFLPIPAVVYLFLWFLTQLYS 188
Query: 248 GMSGTFIGGYSVQSINHIAHLSGALFGVFL 277
G + IG +V I AH+ G + GV L
Sbjct: 189 GTVYSVIGSTTVGGIAWWAHIGGFISGVLL 218
>gi|170017498|ref|YP_001728417.1| small hydrophobic molecule transporter protein, putative
[Leuconostoc citreum KM20]
gi|414597489|ref|ZP_11447055.1| Membrane-associated serine protease [Leuconostoc citreum LBAE E16]
gi|169804355|gb|ACA82973.1| Small hydrophobic molecule transporter protein, putative
[Leuconostoc citreum KM20]
gi|390481770|emb|CCF29116.1| Membrane-associated serine protease [Leuconostoc citreum LBAE E16]
Length = 229
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 130 HNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVS 189
HN A+++ +T F HA H+ +N+ L+ G + E G++ + Y F G N S
Sbjct: 56 HN-QAYWRLLTPVFLHAGIMHIVTNMLTLWFVGPIAERAFGSWRFLMLYAFGGIVGNIFS 114
Query: 190 WLILPKNAVSVGASGAVFGLFA 211
+L+ P A+SVGAS A+F +FA
Sbjct: 115 YLLSPL-AISVGASSALFAMFA 135
>gi|418735675|ref|ZP_13292085.1| peptidase, S54 family [Leptospira borgpetersenii serovar
Castellonis str. 200801910]
gi|410748809|gb|EKR01703.1| peptidase, S54 family [Leptospira borgpetersenii serovar
Castellonis str. 200801910]
Length = 221
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 64/124 (51%), Gaps = 11/124 (8%)
Query: 102 FWIILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQ---FVTAAFCHANWNHLSSNLFFL 158
F++ L+ + ++ + I+ +L H P Q ++ A F H + HLS N+F+L
Sbjct: 14 FFVFLMVVTFFIVNIFLPEHLIRQYFLNH--PGQIQPISWIGAVFYHGSLIHLSGNMFYL 71
Query: 159 YIFGKLVEEEEGNFGLWLSYIFTGA-----AANFVSWLILPKNAVSVGASGAVFGLFAIS 213
+ G+ VE + G G WL + F A +F+ +IL + VGASGA+ G+ A++
Sbjct: 72 FFLGRAVEYKAGK-GRWLLFFFMAALISSLLDSFIRGVILHDSTPVVGASGAISGIAAVA 130
Query: 214 VLVK 217
L+
Sbjct: 131 ALLS 134
>gi|398337664|ref|ZP_10522369.1| rhomboid family protein [Leptospira kmetyi serovar Malaysia str.
Bejo-Iso9]
Length = 272
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 86/187 (45%), Gaps = 26/187 (13%)
Query: 98 VNGVFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHA--NWNHLSSNL 155
+NG + + L L V D++ + + H F W QF+T AF H+ N+ H+ N+
Sbjct: 22 LNGGLFAVQLLLSWTVGDYLTLYLGMTPDLITHRFFVW-QFITYAFLHSVQNFFHILFNM 80
Query: 156 FFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP---KNAVSVGASGAVFGLFAI 212
F L++FG ++E G Y+F+ F W++ +GASG ++GL
Sbjct: 81 FSLWMFGSILENYWGGRNFLKFYLFSCFMGGFFPWILHNVGFHQGTIIGASGGIYGLLIA 140
Query: 213 SVLVKMSWDWRKILEVLILGQFVVEK-----VMEAAQASAGMSGTFIGGYSVQSINHIAH 267
L+ W + E+L +G F ++ ++ A +G G +I H+AH
Sbjct: 141 FALI---WPNQ---ELLFMGFFPLKAKYMVVILMLIIALSGPGG---------NIAHMAH 185
Query: 268 LSGALFG 274
L GA+ G
Sbjct: 186 LGGAIGG 192
>gi|418718375|ref|ZP_13277909.1| peptidase, S54 family [Leptospira borgpetersenii str. UI 09149]
gi|421092732|ref|ZP_15553464.1| peptidase, S54 family [Leptospira borgpetersenii str. 200801926]
gi|410364583|gb|EKP15604.1| peptidase, S54 family [Leptospira borgpetersenii str. 200801926]
gi|410744855|gb|EKQ93590.1| peptidase, S54 family [Leptospira borgpetersenii str. UI 09149]
gi|456889841|gb|EMG00711.1| peptidase, S54 family [Leptospira borgpetersenii str. 200701203]
Length = 197
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 67/145 (46%), Gaps = 12/145 (8%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+Y +T+ F HA+W HL N+ Y FGK +E G L Y+ T + +SW
Sbjct: 40 YYTLITSGFIHADWMHLIFNMISFYSFGKNLETTVGPIKFLLFYLGTILITSVISWRKNL 99
Query: 195 KNAV--SVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGT 252
+N + ++GASG V G+ ++L + + F+ + A A + T
Sbjct: 100 ENPLYATLGASGGVCGVLFATILFYPNLS--------LYMMFIPIPIPGAIYAVLYLVYT 151
Query: 253 FIGGYSVQS--INHIAHLSGALFGV 275
+ S S INH AHL GAL G+
Sbjct: 152 YFSSKSGHSDGINHDAHLWGALCGI 176
>gi|421876784|ref|ZP_16308338.1| Membrane-associated serine protease [Leuconostoc citreum LBAE C10]
gi|372557462|emb|CCF24458.1| Membrane-associated serine protease [Leuconostoc citreum LBAE C10]
Length = 229
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 130 HNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVS 189
HN A+++ +T F HA H+ +N+ L+ G + E G++ + Y F G N S
Sbjct: 56 HN-QAYWRLLTPVFLHAGIMHIVTNMLTLWFVGPIAERAFGSWRFLMLYAFGGIVGNIFS 114
Query: 190 WLILPKNAVSVGASGAVFGLFA 211
+L+ P A+SVGAS A+F +FA
Sbjct: 115 YLLSPL-AISVGASSALFAMFA 135
>gi|456012071|gb|EMF45791.1| Rhomboid family protein [Planococcus halocryophilus Or1]
Length = 202
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++F T F H+ HL N+F L++FG +E G Y+ G A+ ++ + P
Sbjct: 57 WWRFFTPMFLHSGVMHLLFNMFSLFLFGPELERLTGKIRFITIYLLAGFFASAATYFLQP 116
Query: 195 KNAVSVGASGAVFGLFA 211
+ VGASGA+FG+F
Sbjct: 117 LDYSHVGASGAIFGVFG 133
>gi|433462194|ref|ZP_20419783.1| S54 family peptidase [Halobacillus sp. BAB-2008]
gi|432189083|gb|ELK46216.1| S54 family peptidase [Halobacillus sp. BAB-2008]
Length = 510
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ VT+ F H HL N+ LY G VE G++ + Y+ G + S+++ P
Sbjct: 226 WWRLVTSMFLHIGLIHLMMNMLALYYIGTAVERIYGSWRYIIIYLLAGVFGSVASFMLNP 285
Query: 195 KNAVSVGASGAVFGLFA 211
+ VS GASGA+FGLF
Sbjct: 286 Q--VSAGASGAIFGLFG 300
>gi|116326884|ref|YP_796604.1| rhomboid family protein [Leptospira borgpetersenii serovar
Hardjo-bovis str. L550]
gi|116329884|ref|YP_799602.1| rhomboid family protein [Leptospira borgpetersenii serovar
Hardjo-bovis str. JB197]
gi|418720171|ref|ZP_13279369.1| peptidase, S54 family [Leptospira borgpetersenii str. UI 09149]
gi|421095510|ref|ZP_15556223.1| peptidase, S54 family [Leptospira borgpetersenii str. 200801926]
gi|116119628|gb|ABJ77671.1| Rhomboid family protein [Leptospira borgpetersenii serovar
Hardjo-bovis str. L550]
gi|116123573|gb|ABJ74844.1| Rhomboid family protein [Leptospira borgpetersenii serovar
Hardjo-bovis str. JB197]
gi|410362220|gb|EKP13260.1| peptidase, S54 family [Leptospira borgpetersenii str. 200801926]
gi|410743149|gb|EKQ91892.1| peptidase, S54 family [Leptospira borgpetersenii str. UI 09149]
Length = 221
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 64/124 (51%), Gaps = 11/124 (8%)
Query: 102 FWIILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQ---FVTAAFCHANWNHLSSNLFFL 158
F++ L+ + ++ + I+ +L H P Q ++ A F H + HLS N+F+L
Sbjct: 14 FFVFLMVVTFFIVNIFLPEHLIRQYFLNH--PGQIQPVSWIGAVFYHGSLIHLSGNMFYL 71
Query: 159 YIFGKLVEEEEGNFGLWLSYIFTGA-----AANFVSWLILPKNAVSVGASGAVFGLFAIS 213
+ G+ VE + G G WL + F A +F+ +IL + VGASGA+ G+ A++
Sbjct: 72 FFLGRAVEYKAGK-GRWLLFFFMAALISSLLDSFIRGVILHDSTPVVGASGAISGIAAVA 130
Query: 214 VLVK 217
L+
Sbjct: 131 ALLS 134
>gi|428213226|ref|YP_007086370.1| hypothetical protein Oscil6304_2848 [Oscillatoria acuminata PCC
6304]
gi|428001607|gb|AFY82450.1| putative membrane protein [Oscillatoria acuminata PCC 6304]
Length = 235
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 72/159 (45%), Gaps = 18/159 (11%)
Query: 133 PAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLI 192
P ++ F H W HL N+ FL+IFG VE+ G+ + Y+ GA A W
Sbjct: 68 PELITLFSSQFLHGGWLHLGGNMLFLWIFGNNVEDCLGHLKYIIFYLACGALAVLAQWFF 127
Query: 193 LPKNAV-SVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAA-------- 243
+ + S+GASGA+ G+ +L + KIL ++ LG F+ + A
Sbjct: 128 SMDSTIPSLGASGAIAGVMGAYIL---RYPKSKILTLIPLGFFLTTFRIPAVFFLGFWFF 184
Query: 244 -QASAGMSG----TFIGGYSVQSINHIAHLSGALFGVFL 277
QA G++G T IG S I + AH G + G L
Sbjct: 185 QQALYGIAGLAQQTNIGMES-GGIAYWAHAGGFIVGAVL 222
>gi|45658321|ref|YP_002407.1| hypothetical protein [Leptospira interrogans serovar Copenhageni
str. Fiocruz L1-130]
gi|45601563|gb|AAS71044.1| cytoplasmic membrane protein [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
Length = 284
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 88/189 (46%), Gaps = 30/189 (15%)
Query: 98 VNGVFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHA--NWNHLSSNL 155
+NG + + L L V D++ + S + H F W QF+T AF H+ N+ H+ N+
Sbjct: 34 LNGSIFAVQLLLSWTVGDYLTLYFGMTSDMITHRFFIW-QFLTYAFLHSVQNFFHILFNM 92
Query: 156 FFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP---KNAVSVGASGAVFGLFAI 212
F L++FG ++E G+ Y+F+ F W++ +GASG ++GL
Sbjct: 93 FSLWMFGSVLESYWGSRNFLKFYLFSCFMGGFFPWILHNVGFHQGTIIGASGGIYGLLIA 152
Query: 213 SVLVKMSWDWRKILEVLILGQF-------VVEKVMEAAQASAGMSGTFIGGYSVQSINHI 265
L+ W + E+L +G F VV ++ A + +G +I H+
Sbjct: 153 FALI---WPNQ---ELLFMGFFPLKAKYMVVILMLIIAFSGSG-----------SNIAHM 195
Query: 266 AHLSGALFG 274
AHL GA+ G
Sbjct: 196 AHLGGAIGG 204
>gi|383764016|ref|YP_005442998.1| rhomboid family protein [Caldilinea aerophila DSM 14535 = NBRC
104270]
gi|381384284|dbj|BAM01101.1| rhomboid family protein [Caldilinea aerophila DSM 14535 = NBRC
104270]
Length = 228
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 134 AWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLIL 193
AW T+ F H HL SN++ LYIFG VE+ G+ + Y+ G AA V L+
Sbjct: 57 AWLTLFTSMFLHGGLFHLLSNMWALYIFGDNVEDRMGSGRFLIFYLLCGVAAAIVHVLMN 116
Query: 194 PKNAV-SVGASGAVFGL 209
P + + +VGASGA+ G+
Sbjct: 117 PSSTIPTVGASGAISGV 133
>gi|365827061|ref|ZP_09368936.1| hypothetical protein HMPREF0975_00719 [Actinomyces sp. oral taxon
849 str. F0330]
gi|365265470|gb|EHM95232.1| hypothetical protein HMPREF0975_00719 [Actinomyces sp. oral taxon
849 str. F0330]
Length = 279
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTG-AAANFVSWLILP 194
++F+T AF HAN+ HL N++ L++ G +E G + Y+ + + + WL P
Sbjct: 113 WRFLTTAFLHANYMHLGFNMWALWVLGGSLEPVLGRWRFTAVYLLSALGGSTAIYWLSWP 172
Query: 195 KN----AVSVGASGAVFGLFAISVLVK 217
++VGASGAVFGLF+ +V+
Sbjct: 173 DTDAWGTMTVGASGAVFGLFSTMFVVQ 199
>gi|313673694|ref|YP_004051805.1| rhomboid family protein [Calditerrivibrio nitroreducens DSM 19672]
gi|312940450|gb|ADR19642.1| Rhomboid family protein [Calditerrivibrio nitroreducens DSM 19672]
Length = 240
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
++ F T F H +W HL SN++ L+IFG VE+ G+F + YI +G AA+ ++
Sbjct: 69 YWPFFTNMFLHGSWFHLISNIWTLFIFGDNVEDRLGHFKYLIFYILSGLAASITHFIFNI 128
Query: 195 KNAV-SVGASGAVFGL 209
+ + ++GASGA+ G+
Sbjct: 129 DSTIPAIGASGAIAGV 144
>gi|312128758|ref|YP_003993632.1| rhomboid family protein [Caldicellulosiruptor hydrothermalis 108]
gi|311778777|gb|ADQ08263.1| Rhomboid family protein [Caldicellulosiruptor hydrothermalis 108]
Length = 242
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 139 VTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAV 198
+ + F H +W HL SN++ L++FG VE+ G+F + Y+ +G AA + W + V
Sbjct: 73 ICSMFMHGSWMHLISNMWSLWLFGDNVEDRVGHFKFLIFYLLSGFAAAYTHWFFNAHSLV 132
Query: 199 S-VGASGAVFGL 209
+ VGASGA+ G+
Sbjct: 133 AVVGASGAIAGV 144
>gi|257064883|ref|YP_003144555.1| membrane protein [Slackia heliotrinireducens DSM 20476]
gi|256792536|gb|ACV23206.1| uncharacterized membrane protein [Slackia heliotrinireducens DSM
20476]
Length = 267
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLIL- 193
+Y +T+ F H HL N+ +Y G ++E+ G + Y +G A S ++
Sbjct: 52 YYTLITSMFLHGGLMHLLCNMITMYYIGTVIEDVFGPVRFLIIYFLSGIAGGLTSMAVMI 111
Query: 194 --PKNAVSVGASGAVFGLFA 211
+N VGASGA+FGLF
Sbjct: 112 AAGENGGVVGASGALFGLFG 131
>gi|167038998|ref|YP_001661983.1| rhomboid family protein [Thermoanaerobacter sp. X514]
gi|300913413|ref|ZP_07130730.1| Rhomboid family protein [Thermoanaerobacter sp. X561]
gi|307723571|ref|YP_003903322.1| Rhomboid family protein [Thermoanaerobacter sp. X513]
gi|166853238|gb|ABY91647.1| Rhomboid family protein [Thermoanaerobacter sp. X514]
gi|300890098|gb|EFK85243.1| Rhomboid family protein [Thermoanaerobacter sp. X561]
gi|307580632|gb|ADN54031.1| Rhomboid family protein [Thermoanaerobacter sp. X513]
Length = 227
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 70/150 (46%), Gaps = 8/150 (5%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
Y F+T+ F H N HL SN++ L++FG VE+ G+ + Y+ +G A P
Sbjct: 69 YPFITSMFLHGNTLHLISNMWILWLFGDNVEDRMGHIKFLIFYLLSGVIAGVFHMAFNPI 128
Query: 196 NAVS-VGASGAVFG-------LFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASA 247
+ V VGASGA+ G LF + ++ + + + L + V + Q +
Sbjct: 129 SPVPVVGASGAIAGVMGAYFVLFPSARIITLVPSFFLVPVFLPIPAVVYLFLWFLTQLYS 188
Query: 248 GMSGTFIGGYSVQSINHIAHLSGALFGVFL 277
G + IG +V I AH+ G + GV L
Sbjct: 189 GTVYSVIGSTTVGGIAWWAHIGGFISGVLL 218
>gi|416361193|ref|ZP_11682501.1| rhomboid family membrane protein [Clostridium botulinum C str.
Stockholm]
gi|338194390|gb|EGO86853.1| rhomboid family membrane protein [Clostridium botulinum C str.
Stockholm]
Length = 200
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 74/143 (51%), Gaps = 15/143 (10%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+Y+ +T F H HL N++ L G ++E+ G + Y+ G ++ S+ +
Sbjct: 62 YYRLITCMFLHGGLMHLILNMYALNALGPIIEKSYGKNKYIIIYLLGGLISSISSF--IF 119
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFI 254
N VS+GASGA+F L ++LV ++ R ++G+ ++ V+ + FI
Sbjct: 120 SNGVSIGASGAIFSLLG-AILV-LTIKMRS-----VVGKDTIKNVISVIVVN-----IFI 167
Query: 255 GGYSVQSINHIAHLSGALFGVFL 277
G ++ +I++ AH+ G L GVFL
Sbjct: 168 -GLAIPNIDNFAHVGGLLGGVFL 189
>gi|307705753|ref|ZP_07642598.1| rhomboid family protein [Streptococcus mitis SK597]
gi|307620671|gb|EFN99762.1| rhomboid family protein [Streptococcus mitis SK597]
Length = 225
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 62/129 (48%), Gaps = 11/129 (8%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
++ +A F H W H N+ LY G+ VEE G+ + Y+ +G N ++ PK
Sbjct: 59 WRLFSAIFVHIGWEHFIVNMLSLYYLGRQVEEIFGSKKFFFLYLLSGMMGNLFVFVFSPK 118
Query: 196 NAVSVGASGAVFGLFAISVLVK----------MSWDWRKILEVLILGQFVVEKVMEAAQA 245
+ ++VGAS +++GLFA ++++ + + + V I+G ++ + A
Sbjct: 119 S-LAVGASTSLYGLFAAIIVLRYATRNPYIQQLGQSYLTLFVVNIIGSVLIPGISLAGHI 177
Query: 246 SAGMSGTFI 254
+ G F+
Sbjct: 178 GGAVGGAFL 186
>gi|227515651|ref|ZP_03945700.1| S54 family peptidase [Lactobacillus fermentum ATCC 14931]
gi|227086081|gb|EEI21393.1| S54 family peptidase [Lactobacillus fermentum ATCC 14931]
Length = 221
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ TAAF H HL N+ LY G+ +EE G+ + + Y+ + N VS + P
Sbjct: 53 WWRVFTAAFLHIGLTHLFLNMMVLYYLGRTIEELTGHLRMAVIYLVSILMGNLVSVAVHP 112
Query: 195 KNAVSVGASGAVFGLFA 211
+S GAS +FGLF
Sbjct: 113 VT-ISAGASTGIFGLFG 128
>gi|119485695|ref|ZP_01619970.1| hypothetical protein L8106_24970 [Lyngbya sp. PCC 8106]
gi|119457020|gb|EAW38147.1| hypothetical protein L8106_24970 [Lyngbya sp. PCC 8106]
Length = 241
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 56/103 (54%), Gaps = 4/103 (3%)
Query: 133 PAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLI 192
P + T+ F HA++ H+ N+ FL+IFG +EEE G + Y+ G A +L+
Sbjct: 67 PEFLTLFTSQFLHASFIHVGFNMLFLWIFGNNIEEELGQVKFIVFYLSCGVLAALSQYLL 126
Query: 193 LPKNAV-SVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQF 234
+A+ S+GASGA+ G+ +L + +IL V+ +G F
Sbjct: 127 ATGSAIPSLGASGAIAGVMGAYIL---KFPNVRILTVIPIGIF 166
>gi|395243825|ref|ZP_10420804.1| Putative uncharacterized protein [Lactobacillus hominis CRBIP
24.179]
gi|394483875|emb|CCI81812.1| Putative uncharacterized protein [Lactobacillus hominis CRBIP
24.179]
Length = 227
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+++ TA F H W HL+SN +Y G+ +E G++ L Y+ +G N +S+
Sbjct: 57 FWRLFTAQFLHIGWLHLASNAVMIYYVGQYLEPIIGSWRFLLIYLLSGVGGNLLSFACGS 116
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQ 233
+V+ GAS A+FGLF ++ + + ++I + LG+
Sbjct: 117 DYSVAAGASTALFGLF--GAIIAIYFKNKQIPAIFALGR 153
>gi|312110225|ref|YP_003988541.1| Rhomboid protease [Geobacillus sp. Y4.1MC1]
gi|311215326|gb|ADP73930.1| Rhomboid protease [Geobacillus sp. Y4.1MC1]
Length = 389
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 65/138 (47%), Gaps = 11/138 (7%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++F T F H + HL N F LY G VE G++ + Y G S+L
Sbjct: 228 WWRFFTPIFLHIGFLHLLMNTFALYYLGMTVERLYGSWRFFFIYFTAGFFGTLGSFLF-- 285
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWRKI-LEVL---ILGQFVVEKV---MEAAQASA 247
++S GASGA+FGLF L+ +R + L+ + I+G V+ V + +A
Sbjct: 286 TASLSAGASGAIFGLFG--ALLYFGTVYRHLFLQTIGTNIIGLIVINLVFGMIVPGIDNA 343
Query: 248 GMSGTFIGGYSVQSINHI 265
G G IGGY I H+
Sbjct: 344 GHIGGLIGGYLAAGIVHL 361
>gi|253682458|ref|ZP_04863255.1| putative rhomboid protease GluP [Clostridium botulinum D str. 1873]
gi|253562170|gb|EES91622.1| putative rhomboid protease GluP [Clostridium botulinum D str. 1873]
Length = 200
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 74/143 (51%), Gaps = 15/143 (10%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+Y+ +T F H HL N++ L G ++E+ G + Y+ G ++ S+ +
Sbjct: 62 YYRLITCMFLHGGLMHLILNMYALNALGPIIEKSYGKNKYIIIYLLGGLISSISSF--IF 119
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFI 254
N VS+GASGA+F L ++LV ++ R ++G+ ++ V+ + FI
Sbjct: 120 SNGVSIGASGAIFSLLG-AILV-LTIKMRS-----VVGKDTIKNVISVIVVN-----IFI 167
Query: 255 GGYSVQSINHIAHLSGALFGVFL 277
G ++ +I++ AH+ G L GVFL
Sbjct: 168 -GLAIPNIDNFAHVGGLLGGVFL 189
>gi|430005333|emb|CCF21134.1| conserved membrane protein of unknown function [Rhizobium sp.]
Length = 248
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 133 PAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLI 192
P +VT AF H ++ HL+SN+ FL++FG VE+ G+ + Y+ AA + +I
Sbjct: 70 PTGLTYVTYAFIHLDFWHLASNMVFLWVFGDNVEDALGHVRFLVFYLLCAAAGAMLHAVI 129
Query: 193 LPKN-AVSVGASGAVFGLFA 211
P + +GASGA+ G+ A
Sbjct: 130 APASEGPLIGASGAISGVVA 149
>gi|418976513|ref|ZP_13524382.1| peptidase, S54 family [Streptococcus mitis SK575]
gi|383351347|gb|EID29150.1| peptidase, S54 family [Streptococcus mitis SK575]
Length = 224
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 83/184 (45%), Gaps = 22/184 (11%)
Query: 90 ERRKPKKS-----VNGVFWIILLNLG--LYVADHVFQVRSIKSLYLYHNFP--AWYQFVT 140
+RR P S VF ++L+ G Y AD +F+ ++ + FP W F +
Sbjct: 6 DRRYPVTSFFLLVTALVFLLMLVTTGGNFYRADTLFRFGAMYGPAI-RLFPEQVWRLF-S 63
Query: 141 AAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSV 200
A F H W H N+ LY G+ VEE G+ + Y+ +G N + PK+ ++
Sbjct: 64 AIFVHIGWEHFIVNMLSLYYLGRQVEEIFGSKQFFFLYLLSGMMGNLFVFEFSPKS-LAA 122
Query: 201 GASGAVFGLFAISVLVK----------MSWDWRKILEVLILGQFVVEKVMEAAQASAGMS 250
GAS +++GLFA ++++ + + + V I+G ++ + A +
Sbjct: 123 GASTSLYGLFAAIIVLRYATRNPYIQQLGQSYLTLFVVNIIGSVLIPGISLAGHIGGAVG 182
Query: 251 GTFI 254
G F+
Sbjct: 183 GAFL 186
>gi|291548753|emb|CBL25015.1| Uncharacterized membrane protein (homolog of Drosophila rhomboid)
[Ruminococcus torques L2-14]
Length = 206
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 127 YLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAAN 186
Y+ N +Y+ T+ F H +HL +N+ L+ G + E+E G Y +G N
Sbjct: 46 YIIEN-QEYYRLFTSLFLHFGISHLLNNMVLLWALGSIFEKEAGKIRFLFCYFISGIGGN 104
Query: 187 FVS--WLIL-PKNAVSVGASGAVFGLFA 211
+S W I+ + VS GASGA+FGL
Sbjct: 105 LLSLYWNIMHDRQIVSAGASGAIFGLMG 132
>gi|428201832|ref|YP_007080421.1| hypothetical protein Ple7327_1486 [Pleurocapsa sp. PCC 7327]
gi|427979264|gb|AFY76864.1| putative membrane protein [Pleurocapsa sp. PCC 7327]
Length = 237
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 73/157 (46%), Gaps = 26/157 (16%)
Query: 139 VTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAV 198
VT+ F H + H++ N+ FL++FG +E++ G + Y+ G A W ++ V
Sbjct: 73 VTSQFLHGGFLHIAGNMLFLWVFGNNIEDQLGRIKYLIFYLTCGVLAALTQWFFSMQSGV 132
Query: 199 -SVGASGAVFGLFA----------ISVLVKMSW--DWRKILEVLILGQFVVEKVMEA--- 242
++GASGA+ G+ I LV + + +I V LG + V++ +
Sbjct: 133 PAIGASGAIAGVLGAYIIRFPKAQILTLVPLGFFLTTIRIPAVFFLGFWFVQQALYGVAS 192
Query: 243 --AQASAGMSGTFIGGYSVQSINHIAHLSGALFGVFL 277
A A+ GM G GG I + AH G +FG L
Sbjct: 193 LQAPANIGMEG---GG-----IAYWAHAGGFVFGAIL 221
>gi|413949429|gb|AFW82078.1| hypothetical protein ZEAMMB73_813510 [Zea mays]
Length = 119
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Query: 77 SDMISQLELDKPEERRKPKKSVNGVFWIILLNLGLYVADHVFQVRSIKSLYL 128
S ++ +LE+ K E++ + NG+FWI+LLN G+Y+ADH+FQ S K L
Sbjct: 57 SSLVEELEIAK--EKQPHSRRANGIFWILLLNFGIYMADHLFQESSFKQFIL 106
>gi|418697590|ref|ZP_13258581.1| peptidase, S54 family [Leptospira kirschneri str. H1]
gi|409954602|gb|EKO13552.1| peptidase, S54 family [Leptospira kirschneri str. H1]
Length = 284
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 88/189 (46%), Gaps = 30/189 (15%)
Query: 98 VNGVFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHA--NWNHLSSNL 155
+NG + + L L V D++ + S + H F W QF+T AF H+ N+ H+ N+
Sbjct: 34 LNGSVFAVQLLLSWTVGDYLTLYFGMTSDMITHRFFIW-QFLTYAFLHSVQNFFHILFNM 92
Query: 156 FFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP---KNAVSVGASGAVFGLFAI 212
F L++FG ++E G+ Y+F+ F W++ +GASG ++GL
Sbjct: 93 FSLWMFGSVLESYWGSRNFLKFYLFSCFMGGFFPWILHNVGFHQGTIIGASGGIYGLLIA 152
Query: 213 SVLVKMSWDWRKILEVLILGQF-------VVEKVMEAAQASAGMSGTFIGGYSVQSINHI 265
L+ W + E+L +G F VV ++ A + +G +I H+
Sbjct: 153 FALI---WPNQ---ELLFMGFFPLKAKYMVVILMLIIAFSGSG-----------SNIAHM 195
Query: 266 AHLSGALFG 274
AHL GA+ G
Sbjct: 196 AHLGGAIGG 204
>gi|118467848|ref|YP_889287.1| rhomboid family protein [Mycobacterium smegmatis str. MC2 155]
gi|399989299|ref|YP_006569649.1| membrane protein in rhomboid family [Mycobacterium smegmatis str.
MC2 155]
gi|118169135|gb|ABK70031.1| rhomboid family protein [Mycobacterium smegmatis str. MC2 155]
gi|399233861|gb|AFP41354.1| Conserved membrane protein in rhomboid family [Mycobacterium
smegmatis str. MC2 155]
Length = 250
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 58/99 (58%), Gaps = 2/99 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+Y+ VT+ F H HL N++ LY+ G +E+ G + Y +G + + +++ P
Sbjct: 77 YYRLVTSMFLHYGAMHLLFNMWALYVVGPPLEKWLGLTRFGVLYALSGLGGSVLVYMLSP 136
Query: 195 KNAVSVGASGAVFGLF-AISVLVK-MSWDWRKILEVLIL 231
N+ + GASGA+FGLF AI V+ + ++ D R I ++++
Sbjct: 137 LNSATAGASGAIFGLFGAIFVVARHLNLDVRAIGVIVVI 175
>gi|116619460|ref|YP_821616.1| rhomboid family protein [Candidatus Solibacter usitatus Ellin6076]
gi|116222622|gb|ABJ81331.1| Rhomboid family protein [Candidatus Solibacter usitatus Ellin6076]
Length = 280
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 19/125 (15%)
Query: 104 IILLNLGLYVADHVFQVRSIKSLYLYH-------NFPA----------WYQFVTAAFCHA 146
I+L+N+GLY+ VF ++S S ++ F A W++ VTA F H
Sbjct: 60 ILLMNIGLYIVTAVFSLQSGNSDAFFNLDGRTLIAFGAKFDPLLAQGEWWRLVTAGFLHG 119
Query: 147 NWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAV 206
H+ N + L+ G VEE G+ +W+ Y + S + P A+SVGAS +
Sbjct: 120 GMLHIFMNTWALFGLGAQVEETFGSSRMWVIYFVATVTGFYASAVWSP--ALSVGASAGI 177
Query: 207 FGLFA 211
FGL
Sbjct: 178 FGLLG 182
>gi|421488028|ref|ZP_15935424.1| peptidase, S54 family [Streptococcus oralis SK304]
gi|400369328|gb|EJP22329.1| peptidase, S54 family [Streptococcus oralis SK304]
Length = 226
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 83/184 (45%), Gaps = 22/184 (11%)
Query: 90 ERRKPKKS----VNG-VFWIILLNLGLYVADHVFQVRSIKSLY--LYHNFPA--WYQFVT 140
++R P S V G VF ++L+ G+ D + ++Y + FP W F +
Sbjct: 6 DKRYPVTSFFLLVTGFVFLLMLITTGINF-DQAKTLFQFGAMYGPIIRLFPEQIWRLF-S 63
Query: 141 AAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSV 200
A F H W H N+ LY G+ VEE G+ +L Y+ +G N + PK V+
Sbjct: 64 AIFVHIGWEHFIVNMISLYFLGQQVEEIFGSKQFFLLYLLSGMMGNLFVFAFTPK-VVAA 122
Query: 201 GASGAVFGLFAISVLVK----------MSWDWRKILEVLILGQFVVEKVMEAAQASAGMS 250
GAS +++GLFA ++++ + + + + I+G ++ + A +
Sbjct: 123 GASTSLYGLFAAIIVLRYAIRSPYIQQLGQSYLTLFVINIIGSVLIPGISLAGHIGGAVG 182
Query: 251 GTFI 254
G F+
Sbjct: 183 GAFL 186
>gi|417764954|ref|ZP_12412921.1| peptidase, S54 family [Leptospira interrogans serovar Bulgarica
str. Mallika]
gi|400353398|gb|EJP05574.1| peptidase, S54 family [Leptospira interrogans serovar Bulgarica
str. Mallika]
Length = 272
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 88/189 (46%), Gaps = 30/189 (15%)
Query: 98 VNGVFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHA--NWNHLSSNL 155
+NG + + L L V D++ + S + H F W QF+T AF H+ N+ H+ N+
Sbjct: 22 LNGSIFAVQLLLSWTVGDYLTLYFGMTSDMITHRFFIW-QFLTYAFLHSVQNFFHILFNM 80
Query: 156 FFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP---KNAVSVGASGAVFGLFAI 212
F L++FG ++E G+ Y+F+ F W++ +GASG ++GL
Sbjct: 81 FSLWMFGSVLESYWGSRNFLKFYLFSCFMGGFFPWILHNVGFHQGTIIGASGGIYGL--- 137
Query: 213 SVLVKMSWDWRKILEVLILGQF-------VVEKVMEAAQASAGMSGTFIGGYSVQSINHI 265
L+ + W E+L +G F VV ++ A + +G +I H+
Sbjct: 138 --LIAFALIWPN-QELLFMGFFPLKAKYMVVILMLIIAFSGSG-----------SNIAHM 183
Query: 266 AHLSGALFG 274
AHL GA+ G
Sbjct: 184 AHLGGAIGG 192
>gi|288554843|ref|YP_003426778.1| hypothetical protein BpOF4_09150 [Bacillus pseudofirmus OF4]
gi|288546003|gb|ADC49886.1| hypothetical protein BpOF4_09150 [Bacillus pseudofirmus OF4]
Length = 246
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 96/197 (48%), Gaps = 25/197 (12%)
Query: 87 KPEERRKPKKSVNGVFWIILLNLGLYVADHVFQVRS-IKSLYLYHNFPA----WYQFVTA 141
+ E +K+ +F +++++L L+V + S +++L + +N W++ +T
Sbjct: 4 RQESFYSFRKNYPIIFGLLVIHLALFVWMNFLPGGSLVRNLGIGYNLAVANGEWWRLITP 63
Query: 142 AFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSW----LILPKNA 197
F H H+ N F L IFG +E+ G F + Y+ TG AN ++ L P +
Sbjct: 64 IFMHLTIGHVVFNSFSLVIFGPALEQMLGKFRFIIFYLGTGVIANIATYYLGGLSYPPH- 122
Query: 198 VSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGY 257
+GASGA+FGLF + V + + +RK L Q V+ ++ G+ TF+
Sbjct: 123 --LGASGAIFGLFGMFVYLVL---FRKDLIDQANSQLVMTILI------IGLVMTFVN-- 169
Query: 258 SVQSINHIAHLSGALFG 274
+IN +AHL G L G
Sbjct: 170 --SNINVLAHLFGLLGG 184
>gi|417763732|ref|ZP_12411709.1| peptidase, S54 family [Leptospira interrogans str. 2002000624]
gi|417773772|ref|ZP_12421647.1| peptidase, S54 family [Leptospira interrogans str. 2002000621]
gi|418667452|ref|ZP_13228863.1| peptidase, S54 family [Leptospira interrogans serovar Pyrogenes
str. 2006006960]
gi|418675288|ref|ZP_13236580.1| peptidase, S54 family [Leptospira interrogans str. 2002000623]
gi|418689849|ref|ZP_13250968.1| peptidase, S54 family [Leptospira interrogans str. FPW2026]
gi|418709663|ref|ZP_13270449.1| peptidase, S54 family [Leptospira interrogans serovar Grippotyphosa
str. UI 08368]
gi|418732654|ref|ZP_13290381.1| peptidase, S54 family [Leptospira interrogans str. UI 12758]
gi|421122795|ref|ZP_15583078.1| peptidase, S54 family [Leptospira interrogans str. Brem 329]
gi|400361038|gb|EJP17007.1| peptidase, S54 family [Leptospira interrogans str. FPW2026]
gi|409940551|gb|EKN86191.1| peptidase, S54 family [Leptospira interrogans str. 2002000624]
gi|410344695|gb|EKO95861.1| peptidase, S54 family [Leptospira interrogans str. Brem 329]
gi|410576243|gb|EKQ39250.1| peptidase, S54 family [Leptospira interrogans str. 2002000621]
gi|410577860|gb|EKQ45729.1| peptidase, S54 family [Leptospira interrogans str. 2002000623]
gi|410756623|gb|EKR18242.1| peptidase, S54 family [Leptospira interrogans serovar Pyrogenes
str. 2006006960]
gi|410769898|gb|EKR45125.1| peptidase, S54 family [Leptospira interrogans serovar Grippotyphosa
str. UI 08368]
gi|410773434|gb|EKR53462.1| peptidase, S54 family [Leptospira interrogans str. UI 12758]
Length = 272
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 88/189 (46%), Gaps = 30/189 (15%)
Query: 98 VNGVFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHA--NWNHLSSNL 155
+NG + + L L V D++ + S + H F W QF+T AF H+ N+ H+ N+
Sbjct: 22 LNGSIFAVQLLLSWTVGDYLTLYFGMTSDMITHRFFIW-QFLTYAFLHSVQNFFHILFNM 80
Query: 156 FFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP---KNAVSVGASGAVFGLFAI 212
F L++FG ++E G+ Y+F+ F W++ +GASG ++GL
Sbjct: 81 FSLWMFGSVLESYWGSRNFLKFYLFSCFMGGFFPWILHNVGFHQGTIIGASGGIYGL--- 137
Query: 213 SVLVKMSWDWRKILEVLILGQF-------VVEKVMEAAQASAGMSGTFIGGYSVQSINHI 265
L+ + W E+L +G F VV ++ A + +G +I H+
Sbjct: 138 --LIAFALIWPN-QELLFMGFFPLKAKYMVVILMLIIAFSGSG-----------SNIAHM 183
Query: 266 AHLSGALFG 274
AHL GA+ G
Sbjct: 184 AHLGGAIGG 192
>gi|374594805|ref|ZP_09667809.1| Rhomboid family protein [Gillisia limnaea DSM 15749]
gi|373869444|gb|EHQ01442.1| Rhomboid family protein [Gillisia limnaea DSM 15749]
Length = 226
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 68/144 (47%), Gaps = 12/144 (8%)
Query: 134 AWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLI- 192
A YQ +T+ F H + +HL N+ LY F +V + G+ G L Y+ + N +S+
Sbjct: 54 AKYQILTSGFLHVDSSHLFVNMLTLYFFANVVLNDMGSLGFLLVYLASLILGNLLSYFFH 113
Query: 193 -LPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSG 251
+N +VGASGAV G+ ++L++ ++LG F + + +
Sbjct: 114 KDEENYNAVGASGAVMGVLYSAILLRPD---------MMLGLFFIIPIPAYVFGIGYLLY 164
Query: 252 TFIGGYSVQ-SINHIAHLSGALFG 274
T G Q +I H AH GA+ G
Sbjct: 165 TIYGMKRRQDNIGHDAHFGGAVGG 188
>gi|160935902|ref|ZP_02083276.1| hypothetical protein CLOBOL_00795 [Clostridium bolteae ATCC
BAA-613]
gi|158441144|gb|EDP18861.1| hypothetical protein CLOBOL_00795 [Clostridium bolteae ATCC
BAA-613]
Length = 206
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+Y+ TA F H +HL++N+ L + G+ +E G+ + Y+ +G AAN +S +
Sbjct: 56 YYRLFTAMFLHFGVSHLANNMLVLLVLGEKMERALGHIKYLIFYLASGVAANSISLAVQV 115
Query: 195 KN---AVSVGASGAVFGL 209
+ +VS GASGA+FG+
Sbjct: 116 RTGQASVSAGASGAIFGV 133
>gi|359407888|ref|ZP_09200362.1| putative membrane protein [SAR116 cluster alpha proteobacterium
HIMB100]
gi|356677251|gb|EHI49598.1| putative membrane protein [SAR116 cluster alpha proteobacterium
HIMB100]
Length = 284
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 67/150 (44%), Gaps = 11/150 (7%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W T+ F H W HL SN+ +L+IF VE+ G + Y G A F +I P
Sbjct: 71 WLSIFTSMFLHGGWLHLGSNMLYLWIFSDNVEDAMGPVRFIIFYALCGVGAAFSQSIIDP 130
Query: 195 KNAVS-VGASGAVFGLFAISVLVKMSWDWRKILEVLI------LGQFVVEKVMEAAQASA 247
+ VGASG + G+ +L+ R + +L+ L ++V + A Q +
Sbjct: 131 FSVTPMVGASGGIAGILGAYILLHPKAAVRVFMLILVFIRIISLPAWLVLGIWIAGQFVS 190
Query: 248 GMSGTFIGGYSVQSINHIAHLSGALFGVFL 277
+ T GG V + AH+ G + G+ L
Sbjct: 191 APT-TLSGGGDVA---YFAHIGGFVTGMIL 216
>gi|254487041|ref|ZP_05100246.1| peptidase, S54 (rhomboid) family [Roseobacter sp. GAI101]
gi|214043910|gb|EEB84548.1| peptidase, S54 (rhomboid) family [Roseobacter sp. GAI101]
Length = 247
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 140 TAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVS 199
T+ F H W HL+ N+ FLYIFG +E+E G+ G + Y+ G + P + V
Sbjct: 66 TSMFLHGGWMHLAGNMLFLYIFGDNIEDEMGHVGYLVFYLACGLLSAGAHVFSAPYSPVP 125
Query: 200 -VGASGAVFGLFAISVLV 216
VGASGA+ G+ +L+
Sbjct: 126 MVGASGAIAGVMGGYLLL 143
>gi|163782925|ref|ZP_02177920.1| hypothetical protein HG1285_00080 [Hydrogenivirga sp. 128-5-R1-1]
gi|159881605|gb|EDP75114.1| hypothetical protein HG1285_00080 [Hydrogenivirga sp. 128-5-R1-1]
Length = 229
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLIL-- 193
Y +T F H W H+ N++FL++FG VE+ G F + Y+ TG AA LI
Sbjct: 68 YTLLTHMFLHGGWFHVIGNMWFLWVFGDNVEDRLGKFRYVVFYVLTGLAAAITQVLISLA 127
Query: 194 --PKNAVSVGASGAVFGLFA 211
N VGASGAV G+
Sbjct: 128 FGGGNVPMVGASGAVSGILG 147
>gi|453050817|gb|EME98342.1| integral membrane protein [Streptomyces mobaraensis NBRC 13819 =
DSM 40847]
Length = 238
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 128 LYHNFPAWYQF-VTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAAN 186
L+H P TA F H NW HL N+ FL++FG + EE G L Y+ TG A
Sbjct: 59 LWHGLPGSLATPFTALFVHGNWLHLLGNMLFLHVFGAMTEERMGRLSFALCYVTTGFLAL 118
Query: 187 FVSWLILPKNAVS-VGASGAVFGLFA 211
+ +A S VGASGA+ G+
Sbjct: 119 LGYAAVHAGSAQSLVGASGAISGILG 144
>gi|407980116|ref|ZP_11160914.1| serine peptidase [Bacillus sp. HYC-10]
gi|407413170|gb|EKF34898.1| serine peptidase [Bacillus sp. HYC-10]
Length = 201
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 40/78 (51%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ VT F H + H+ N L++F +E G L YI G N ++ + P
Sbjct: 58 WWRLVTPIFLHGSLTHILFNSMSLFLFAPALESLLGKVRFLLIYIGAGFIGNLGTYWVEP 117
Query: 195 KNAVSVGASGAVFGLFAI 212
V VGASGA+FGLF +
Sbjct: 118 LEYVHVGASGAIFGLFGV 135
>gi|418676079|ref|ZP_13237365.1| peptidase, S54 family [Leptospira kirschneri serovar Grippotyphosa
str. RM52]
gi|418686186|ref|ZP_13247355.1| peptidase, S54 family [Leptospira kirschneri serovar Grippotyphosa
str. Moskva]
gi|418739120|ref|ZP_13295508.1| peptidase, S54 family [Leptospira kirschneri serovar Valbuzzi str.
200702274]
gi|421087998|ref|ZP_15548827.1| peptidase, S54 family [Leptospira kirschneri str. 200802841]
gi|421131126|ref|ZP_15591311.1| peptidase, S54 family [Leptospira kirschneri str. 2008720114]
gi|400323844|gb|EJO71692.1| peptidase, S54 family [Leptospira kirschneri serovar Grippotyphosa
str. RM52]
gi|410003254|gb|EKO53699.1| peptidase, S54 family [Leptospira kirschneri str. 200802841]
gi|410357492|gb|EKP04742.1| peptidase, S54 family [Leptospira kirschneri str. 2008720114]
gi|410739140|gb|EKQ83869.1| peptidase, S54 family [Leptospira kirschneri serovar Grippotyphosa
str. Moskva]
gi|410753372|gb|EKR10337.1| peptidase, S54 family [Leptospira kirschneri serovar Valbuzzi str.
200702274]
Length = 284
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 88/189 (46%), Gaps = 30/189 (15%)
Query: 98 VNGVFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHA--NWNHLSSNL 155
+NG + + L L V D++ + S + H F W QF+T AF H+ N+ H+ N+
Sbjct: 34 LNGSVFAVQLLLSWTVGDYLTLYFGMTSDMITHRFFIW-QFLTYAFLHSVQNFFHILFNM 92
Query: 156 FFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP---KNAVSVGASGAVFGLFAI 212
F L++FG ++E G+ Y+F+ F W++ +GASG ++GL
Sbjct: 93 FSLWMFGSVLESYWGSRNFLKFYLFSCFMGGFFPWILHNVGFHQGTIIGASGGIYGLLIA 152
Query: 213 SVLVKMSWDWRKILEVLILGQF-------VVEKVMEAAQASAGMSGTFIGGYSVQSINHI 265
L+ W + E+L +G F VV ++ A + +G +I H+
Sbjct: 153 FALI---WPNQ---ELLFMGFFPLKAKYMVVILMLIIAFSGSG-----------SNIAHM 195
Query: 266 AHLSGALFG 274
AHL GA+ G
Sbjct: 196 AHLGGAIGG 204
>gi|357053297|ref|ZP_09114395.1| hypothetical protein HMPREF9467_01367 [Clostridium clostridioforme
2_1_49FAA]
gi|355385874|gb|EHG32920.1| hypothetical protein HMPREF9467_01367 [Clostridium clostridioforme
2_1_49FAA]
Length = 206
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 46/78 (58%), Gaps = 3/78 (3%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+Y+ TA F H +HL++N+ L + G+ +E+ G+ + Y+ +G AAN +S +
Sbjct: 56 YYRLFTAMFLHFGVSHLANNMLVLLVLGEKMEKALGHIKYLIFYLASGVAANGISLAVQV 115
Query: 195 KNA---VSVGASGAVFGL 209
+ VS GASGA+FG+
Sbjct: 116 RTGAASVSAGASGAIFGV 133
>gi|229916284|ref|YP_002884930.1| rhomboid family protein [Exiguobacterium sp. AT1b]
gi|229467713|gb|ACQ69485.1| Rhomboid family protein [Exiguobacterium sp. AT1b]
Length = 350
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T F H W H + N+F L+ G LVE G+ + Y+ +G A S+
Sbjct: 187 WWRLITPMFLHIGWFHFAINMFALWSLGPLVERMYGSIRFLIIYLLSGILATSASFAF-- 244
Query: 195 KNAVSVGASGAVFGL 209
++S GASGA+FGL
Sbjct: 245 SESISAGASGALFGL 259
>gi|413949428|gb|AFW82077.1| hypothetical protein ZEAMMB73_813510 [Zea mays]
Length = 111
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 35/52 (67%), Gaps = 2/52 (3%)
Query: 77 SDMISQLELDKPEERRKPKKSVNGVFWIILLNLGLYVADHVFQVRSIKSLYL 128
S ++ +LE+ K E++ + NG+FWI+LLN G+Y+ADH+FQ S K L
Sbjct: 57 SSLVEELEIAK--EKQPHSRRANGIFWILLLNFGIYMADHLFQESSFKQFIL 106
>gi|398338607|ref|ZP_10523310.1| hypothetical protein LkirsB1_02740 [Leptospira kirschneri serovar
Bim str. 1051]
Length = 272
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 88/189 (46%), Gaps = 30/189 (15%)
Query: 98 VNGVFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHA--NWNHLSSNL 155
+NG + + L L V D++ + S + H F W QF+T AF H+ N+ H+ N+
Sbjct: 34 LNGSVFAVQLLLSWTVGDYLTLYFGMTSDMITHRFFIW-QFLTYAFLHSVQNFFHILFNM 92
Query: 156 FFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP---KNAVSVGASGAVFGLFAI 212
F L++FG ++E G+ Y+F+ F W++ +GASG ++GL
Sbjct: 93 FSLWMFGSVLESYWGSRNFLKFYLFSCFMGGFFPWILHNVGFHQGTIIGASGGIYGL--- 149
Query: 213 SVLVKMSWDWRKILEVLILGQF-------VVEKVMEAAQASAGMSGTFIGGYSVQSINHI 265
L+ + W E+L +G F VV ++ A + +G +I H+
Sbjct: 150 --LIAFALIWPN-QELLFMGFFPLKAKYMVVILMLIIAFSGSG-----------SNIAHM 195
Query: 266 AHLSGALFG 274
AHL GA+ G
Sbjct: 196 AHLGGAIGG 204
>gi|429758897|ref|ZP_19291409.1| peptidase, S54 family [Actinomyces sp. oral taxon 181 str. F0379]
gi|429172593|gb|EKY14141.1| peptidase, S54 family [Actinomyces sp. oral taxon 181 str. F0379]
Length = 264
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 83/185 (44%), Gaps = 35/185 (18%)
Query: 104 IILLNLGLYVADHVFQVRSIKSLYL----YHNFPAWYQFVTAAFCHANWNHLSSNLFFLY 159
II + + L+V D + + + YL H ++ +T AF H N H++ N+ LY
Sbjct: 54 IIGVCVALWVGD--ILTKGVITQYLGFTPIHGLYQPWRILTTAFLHVNLMHIAFNMVSLY 111
Query: 160 IFGKLVEEEEGNFGLWLSYIFT--GAAANFVSW-LILPKNA--VSVGASGAVFGLFAISV 214
G+ +E G + Y+ + G + W LI P +A V+VGASGA+FGLF SV
Sbjct: 112 AIGRALEPALGRGPYFCLYLLSALGGTLGVLGWVLIDPSSALTVTVGASGAIFGLFG-SV 170
Query: 215 LV---KMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQSINHIAHLSGA 271
V D R ++ +L + + G+ V ++ AHL G
Sbjct: 171 FVLQRAAGIDVRAVVGLLAV--------------------NLLYGFIVSGVSWQAHLGGL 210
Query: 272 LFGVF 276
LFG+
Sbjct: 211 LFGML 215
>gi|222616447|gb|EEE52579.1| hypothetical protein OsJ_34868 [Oryza sativa Japonica Group]
Length = 864
Score = 51.2 bits (121), Expect = 5e-04, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 130 HNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVS 189
H W + +T + HA HL N+ L G +E+E G + L Y+ +G + +S
Sbjct: 110 HGHQGW-RLITCIWLHAGVVHLLINMLCLLFIGIRLEQEFGFVRIGLVYLISGLGGSLMS 168
Query: 190 WLILPKNAVSVGASGAVFGLFAISVLVKMSWDW 222
L + ++++SVGASGA+FGL S+L ++ +W
Sbjct: 169 ALFI-RSSISVGASGALFGLIG-SMLSELITNW 199
>gi|440715747|ref|ZP_20896277.1| rhomboid family protein [Rhodopirellula baltica SWK14]
gi|436439296|gb|ELP32763.1| rhomboid family protein [Rhodopirellula baltica SWK14]
Length = 410
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 61/116 (52%), Gaps = 4/116 (3%)
Query: 104 IILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGK 163
II N GL++ + + + L L + +Q+V++AF HA+W+HL N+ FL+ FG
Sbjct: 21 IIATNTGLFLLTGMGEYGAHDWLILEFDRINPFQWVSSAFMHASWSHLVGNMVFLWCFGL 80
Query: 164 LVEEEEGNFGLWLSY----IFTGAAANFVSWLILPKNAVSVGASGAVFGLFAISVL 215
++E + G L Y + GA ++ ++GASG +F L A++V+
Sbjct: 81 VIEGKLGWQRFSLLYLGLALADGAIGQIPMFVFSDGQGGALGASGVIFALLAVAVI 136
>gi|406577415|ref|ZP_11053025.1| peptidase, S54 (rhomboid) family protein [Streptococcus sp. GMD6S]
gi|406586912|ref|ZP_11061831.1| peptidase, S54 (rhomboid) family protein [Streptococcus sp. GMD1S]
gi|419814082|ref|ZP_14338885.1| peptidase, S54 (rhomboid) family protein [Streptococcus sp. GMD2S]
gi|419817140|ref|ZP_14341309.1| peptidase, S54 (rhomboid) family protein [Streptococcus sp. GMD4S]
gi|404459967|gb|EKA06267.1| peptidase, S54 (rhomboid) family protein [Streptococcus sp. GMD6S]
gi|404466392|gb|EKA11732.1| peptidase, S54 (rhomboid) family protein [Streptococcus sp. GMD4S]
gi|404472252|gb|EKA16685.1| peptidase, S54 (rhomboid) family protein [Streptococcus sp. GMD2S]
gi|404473602|gb|EKA17934.1| peptidase, S54 (rhomboid) family protein [Streptococcus sp. GMD1S]
Length = 226
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 11/125 (8%)
Query: 140 TAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVS 199
+A F H W H N+ LY G+ VEE G+ +L Y+ +G N + PK V+
Sbjct: 63 SAIFVHIGWEHFIVNMISLYFLGRQVEEIFGSKQFFLLYLLSGMMGNLFVFAFTPK-VVA 121
Query: 200 VGASGAVFGLFAISVLVK----------MSWDWRKILEVLILGQFVVEKVMEAAQASAGM 249
GAS +++GLFA ++++ + + + + I+G ++ + A +
Sbjct: 122 AGASTSLYGLFAAIIVLRYATRNPYIQQLGQSYLTLFVINIIGSVLIPGISLAGHIGGAV 181
Query: 250 SGTFI 254
G F+
Sbjct: 182 GGAFL 186
>gi|332663565|ref|YP_004446353.1| rhomboid family protein [Haliscomenobacter hydrossis DSM 1100]
gi|332332379|gb|AEE49480.1| Rhomboid family protein [Haliscomenobacter hydrossis DSM 1100]
Length = 281
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 79/170 (46%), Gaps = 23/170 (13%)
Query: 114 ADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFG 173
A + F+V SI L+H + + V++AF H NW HL N+ LY F L+E + G
Sbjct: 30 AAYKFEVDSI----LFH--KDFKRLVSSAFLHVNWMHLIFNMLSLYAFSNLLENQLGGLN 83
Query: 174 LWLSYIFTGAAANFVSWLILPKNA--VSVGASGAVFGLFAISVLVKMSWDWRKILEVLIL 231
L Y+ + N ++ + ++ +VGASGAV G+ S+ + + +
Sbjct: 84 FVLLYLTSLVGGNLLALFVHRQHGSYSAVGASGAVCGVIFASI---------ALFPGIEV 134
Query: 232 GQFVVEKVMEAAQASAGMSGTFIGGYSVQS----INHIAHLSGALFGVFL 277
G F + + G+ I Y ++S I H AHL GAL GV L
Sbjct: 135 GTFFLP--FQFPGWLFGLLYVAISIYGIKSKRGNIGHEAHLGGALIGVLL 182
>gi|342164749|ref|YP_004769388.1| hypothetical protein SPPN_10620 [Streptococcus pseudopneumoniae
IS7493]
gi|341934631|gb|AEL11528.1| hypothetical protein SPPN_10620 [Streptococcus pseudopneumoniae
IS7493]
Length = 224
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 83/184 (45%), Gaps = 22/184 (11%)
Query: 90 ERRKPKKS-----VNGVFWIILLNLG--LYVADHVFQVRSIKSLYLYHNFPA--WYQFVT 140
+RR P S VF ++L+ G Y AD +F+ ++ + FP W F +
Sbjct: 6 DRRYPVTSFFLLVTALVFLLMLVTTGGNFYRADTLFRFGAMYGPVI-RLFPEQIWRLF-S 63
Query: 141 AAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSV 200
A F H W H N+ LY G+ VEE G+ + Y+ +G N + PK+ ++
Sbjct: 64 AIFVHIGWEHFIVNMLSLYYLGRQVEEIFGSKQFFFLYLLSGMMGNLFVFEFSPKS-LAA 122
Query: 201 GASGAVFGLFAISVLVK----------MSWDWRKILEVLILGQFVVEKVMEAAQASAGMS 250
GAS +++GLFA ++++ + + + + I+G ++ + A +
Sbjct: 123 GASTSLYGLFAAIIVLRYATRNPYIQQLGQSYLTLFVINIIGSVLIPGISLAGHIGGAVG 182
Query: 251 GTFI 254
G F+
Sbjct: 183 GAFL 186
>gi|150019138|ref|YP_001311392.1| rhomboid family protein [Clostridium beijerinckii NCIMB 8052]
gi|149905603|gb|ABR36436.1| Rhomboid family protein [Clostridium beijerinckii NCIMB 8052]
Length = 328
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 70/137 (51%), Gaps = 15/137 (10%)
Query: 131 NFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSW 190
N +++ +T AF H H+ N++ LYI G +++ G + ++ YIF+ ++ +S+
Sbjct: 185 NQGQYWRLLTCAFLHGGLIHIVGNMYSLYILGPEIQQIYGVYKYFIIYIFSCLTSSLLSY 244
Query: 191 LILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMS 250
+ P +SVGASG +FGL V+ I+E + + + +++A M
Sbjct: 245 FMSP--YLSVGASGGIFGLMGALVVF-------AIIERKRINKRYLSSLLQA------MG 289
Query: 251 GTFIGGYSVQSINHIAH 267
G+S+ +I++ AH
Sbjct: 290 VNLFIGFSISNIDNFAH 306
>gi|257413126|ref|ZP_04742087.2| integral membrane protein [Roseburia intestinalis L1-82]
gi|257204520|gb|EEV02805.1| integral membrane protein [Roseburia intestinalis L1-82]
Length = 366
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 16/143 (11%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLIL- 193
W++ TA F H HL +N+ + G +E G+F +++ Y+ +G +S+ ++
Sbjct: 222 WWRIFTAMFIHFGLPHLVNNMVIFFCVGSRLERAAGHFKMFVIYMLSGIGGGLLSYFMML 281
Query: 194 --PKNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSG 251
AVS GASGAVFG I L+ + R E L + ++ V+
Sbjct: 282 YSGDYAVSAGASGAVFG--TIGGLIWVVIRHRGRFEGLTVKGMILMAVL----------- 328
Query: 252 TFIGGYSVQSINHIAHLSGALFG 274
+ G+S I++ H+ G L G
Sbjct: 329 SLYYGFSTIGIDNWCHVGGILTG 351
>gi|116310009|emb|CAH67035.1| OSIGBa0139P06.8 [Oryza sativa Indica Group]
gi|218195395|gb|EEC77822.1| hypothetical protein OsI_17028 [Oryza sativa Indica Group]
Length = 342
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 56/93 (60%), Gaps = 2/93 (2%)
Query: 130 HNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVS 189
H AW + T+ + HA HL++N+ L + G +E++ G + + L Y+ +G + +S
Sbjct: 131 HGNQAW-RLETSTWLHAGLIHLAANMISLLLIGIRLEQQFGFWKVGLVYLVSGFGGSVLS 189
Query: 190 WLILPKNAVSVGASGAVFGLFAISVLVKMSWDW 222
L + +N ++VGASGA+FGL ++L ++ +W
Sbjct: 190 VLFISRNGITVGASGALFGLLG-AMLSELITNW 221
>gi|110635361|ref|YP_675569.1| rhomboid-like protein [Chelativorans sp. BNC1]
gi|110286345|gb|ABG64404.1| Rhomboid-like protein [Chelativorans sp. BNC1]
Length = 237
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 133 PAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLI 192
PA +VT +F H + HL N+ FL++FG VE+ G+ Y+ A F+ L+
Sbjct: 70 PAPLTYVTYSFLHGDIFHLGGNMLFLWVFGDNVEDALGHLRYLAFYLACTVAGAFLHGLV 129
Query: 193 LPKN-AVSVGASGAVFGLFA 211
P + A +GASGAV G+ A
Sbjct: 130 APDSQAPLIGASGAVAGVIA 149
>gi|408679359|ref|YP_006879186.1| putative membrane protein [Streptomyces venezuelae ATCC 10712]
gi|328883688|emb|CCA56927.1| putative membrane protein [Streptomyces venezuelae ATCC 10712]
Length = 294
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 67/138 (48%), Gaps = 15/138 (10%)
Query: 104 IILLNLGLYVADHVFQVRSIKSLYL--YHNFPA-----------WYQFVTAAFCHANWNH 150
+I +NL +Y+A VF R + L L Y PA WY+ +T+ H H
Sbjct: 87 LIGVNLAVYLAVLVFGDRLVDELVLIGYAWSPALGEVVGVADGEWYRLLTSTVLHQEVWH 146
Query: 151 LSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLF 210
+ N+ L++ G +VE E G + +G + + +++++ N S+GASG V+GL
Sbjct: 147 ILFNVLGLWVIGGIVEPELGRIRYAALCLLSGLSGSVLAYVVAEPNQPSLGASGVVYGLI 206
Query: 211 AISVLV--KMSWDWRKIL 226
V++ + D R ++
Sbjct: 207 GAWVVLARRRRHDMRPVI 224
>gi|338731999|ref|YP_004670472.1| hypothetical protein SNE_A01030 [Simkania negevensis Z]
gi|336481382|emb|CCB87981.1| hypothetical protein SNE_A01030 [Simkania negevensis Z]
Length = 336
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 73/149 (48%), Gaps = 22/149 (14%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T+ F H HL N++ L+ G+ +E G++ ++SY+ +G + S+L
Sbjct: 48 WWRLLTSLFIHIGLIHLLVNMYALFSMGRFLESVIGSYLFFVSYLVSGLISGIASFLFHQ 107
Query: 195 KNA-VSVGASGAVFGLFAISVL----VKMSWDWRKILEVLILGQFVV-EKVMEAAQASAG 248
+ VS GASGA+ G+F + + + MS + RK + L+ +V+ VM A
Sbjct: 108 ETMIVSAGASGAIAGIFGMGCVILFTIPMSIEERK--KALLNCMYVLFANVMYA------ 159
Query: 249 MSGTFIGGYSVQSINHIAHLSGALFGVFL 277
+ ++H AHL G G+ L
Sbjct: 160 --------FKSHDLDHSAHLGGFACGILL 180
>gi|325972771|ref|YP_004248962.1| peptidase S54, rhomboid domain [Sphaerochaeta globus str. Buddy]
gi|324028009|gb|ADY14768.1| Peptidase S54, rhomboid domain [Sphaerochaeta globus str. Buddy]
Length = 212
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 69/146 (47%), Gaps = 28/146 (19%)
Query: 140 TAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTG---AAANFVSWLILPKN 196
T F H +NHL N+ L+IFG +VE+ G+ L Y+ G +F+S+ + N
Sbjct: 62 TYMFVHGGFNHLLFNMLSLFIFGSMVEKRIGSKEFLLFYLLAGLFSGIVSFISYYLAGTN 121
Query: 197 AVSVGASGAVFGLFAISVLVKMSWDWRKIL---------EVLILGQFVVEKVMEAAQASA 247
+ VGASGA+ +A+ ++ + + + I +L+ ++ ++E +
Sbjct: 122 VILVGASGAI---YAVLLMFAVFYPYSVIFVFGFIPVRAPILV----ILYAIIELSSQVF 174
Query: 248 GMSGTFIGGYSVQSINHIAHLSGALF 273
G G ++ H+ HLSG +F
Sbjct: 175 GRGG---------NVAHLTHLSGLVF 191
>gi|425054674|ref|ZP_18458179.1| peptidase, S54 family [Enterococcus faecium 505]
gi|403035626|gb|EJY47012.1| peptidase, S54 family [Enterococcus faecium 505]
Length = 238
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Query: 127 YLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAAN 186
YL H F W++ VT F H H N LY G+ +E G++ +L Y+F+G N
Sbjct: 57 YLVH-FNEWWRLVTPIFIHFGVMHFVMNSLILYFMGQQIEAIYGHWRFFLIYMFSGIMGN 115
Query: 187 FVSWLILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLI 230
S+ N +S GAS ++FGLF ++ + + ++ L+
Sbjct: 116 TASFAFNEANVLSGGASTSIFGLFGALFILGFHFKYNTAIQQLV 159
>gi|359789134|ref|ZP_09292090.1| rhomboid family protein [Mesorhizobium alhagi CCNWXJ12-2]
gi|359254992|gb|EHK57945.1| rhomboid family protein [Mesorhizobium alhagi CCNWXJ12-2]
Length = 256
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 133 PAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLI 192
P ++T AF H ++ HL+ N+ FL++FG VE+ G+F + Y+ V I
Sbjct: 70 PEDMTYITYAFLHGDFFHLAGNMLFLWVFGDNVEDALGHFRFLVFYLLCAIGGAAVHGWI 129
Query: 193 LPKNAVS-VGASGAVFGLFA 211
P + + +GASGA+ G+ A
Sbjct: 130 APDSQIPLIGASGAIAGIVA 149
>gi|421107074|ref|ZP_15567633.1| peptidase, S54 family [Leptospira kirschneri str. H2]
gi|410007846|gb|EKO61526.1| peptidase, S54 family [Leptospira kirschneri str. H2]
Length = 282
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 88/189 (46%), Gaps = 30/189 (15%)
Query: 98 VNGVFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHA--NWNHLSSNL 155
+NG + + L L V D++ + S + H F W QF+T AF H+ N+ H+ N+
Sbjct: 32 LNGSVFAVQLLLSWTVGDYLTLYFGMTSDMITHRFFIW-QFLTYAFLHSVQNFFHILFNM 90
Query: 156 FFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP---KNAVSVGASGAVFGLFAI 212
F L++FG ++E G+ Y+F+ F W++ +GASG ++GL
Sbjct: 91 FSLWMFGSVLESYWGSRNFLKFYLFSCFMGGFFPWILHNVGFHQGTIIGASGGIYGLLIA 150
Query: 213 SVLVKMSWDWRKILEVLILGQF-------VVEKVMEAAQASAGMSGTFIGGYSVQSINHI 265
L+ W + E+L +G F VV ++ A + +G +I H+
Sbjct: 151 FALI---WPNQ---ELLFMGFFPLKAKYMVVILMLIIAFSGSG-----------SNIAHM 193
Query: 266 AHLSGALFG 274
AHL GA+ G
Sbjct: 194 AHLGGAIGG 202
>gi|257791201|ref|YP_003181807.1| rhomboid family protein [Eggerthella lenta DSM 2243]
gi|257475098|gb|ACV55418.1| Rhomboid family protein [Eggerthella lenta DSM 2243]
Length = 263
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSW---- 190
Y+FVT F H + HL N+ LY G+++E G Y G N VS+
Sbjct: 89 LYRFVTPMFLHMDLMHLGFNMVALYSVGEVLERTLGKGSYLALYFIAGITGNAVSYAADV 148
Query: 191 LILPKNAVSVGASGAVFGLF 210
L+ +AVS GAS +VFGLF
Sbjct: 149 LLGGGSAVSAGASTSVFGLF 168
>gi|227551789|ref|ZP_03981838.1| S54 family peptidase [Enterococcus faecium TX1330]
gi|424766449|ref|ZP_18193802.1| peptidase, S54 family [Enterococcus faecalis TX1337RF]
gi|227179094|gb|EEI60066.1| S54 family peptidase [Enterococcus faecium TX1330]
gi|402410424|gb|EJV42827.1| peptidase, S54 family [Enterococcus faecium TX1337RF]
Length = 238
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 127 YLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAAN 186
YL H F W++ VT F H H N LY G+ +E G++ +L Y+F+G N
Sbjct: 57 YLVH-FNEWWRLVTPIFIHFGVMHFVMNSLILYFMGQQIEAIYGHWRFFLIYMFSGIMGN 115
Query: 187 FVSWLILPKNAVSVGASGAVFGLFA 211
S+ N +S GAS ++FGLF
Sbjct: 116 TASFAFNEANVLSGGASTSIFGLFG 140
>gi|84623888|ref|YP_451260.1| hypothetical protein XOO_2231 [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|84367828|dbj|BAE68986.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
311018]
Length = 202
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 70/155 (45%), Gaps = 34/155 (21%)
Query: 137 QFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNF-GLWLSYIFTGAAANFVSWLILPK 195
+ VT F HA+ HL N+ L+ FG+++E G L+Y AA VS ILP
Sbjct: 42 RLVTYGFIHADLGHLVFNMVTLFFFGRVIESVMAQLTGSVLTYPLFYLAALAVS--ILPS 99
Query: 196 --------NAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASA 247
N +S+GASGAV + +L++ W IL + I A A
Sbjct: 100 YLKNQKNPNYLSLGASGAVSAVLFAFILLQ---PWTIILVLFI-------------PAPA 143
Query: 248 GMSGTFIGGYSV-------QSINHIAHLSGALFGV 275
+ F GYS+ INH AHL+GA FGV
Sbjct: 144 IIYAVFYVGYSLWMDRRGGDRINHSAHLAGAAFGV 178
>gi|331265560|ref|YP_004325190.1| peptidase, S54 (rhomboid) family protein [Streptococcus oralis Uo5]
gi|326682232|emb|CBY99849.1| peptidase, S54 (rhomboid) family protein [Streptococcus oralis Uo5]
Length = 226
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 11/125 (8%)
Query: 140 TAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVS 199
+A F H W H N+ LY G+ VEE G+ +L Y+ +G N + PK V+
Sbjct: 63 SAIFVHIGWEHFIVNMISLYFLGRQVEEIFGSKQFFLLYLLSGMMGNLFVFAFTPK-VVA 121
Query: 200 VGASGAVFGLFAISVLVK----------MSWDWRKILEVLILGQFVVEKVMEAAQASAGM 249
GAS +++GLFA ++++ + + + + I+G ++ + A +
Sbjct: 122 AGASTSLYGLFAAIIVLRYATRNPYIQQLGQSYLTLFVINIIGSVLIPGISLAGHIGGAV 181
Query: 250 SGTFI 254
G F+
Sbjct: 182 GGAFL 186
>gi|58581972|ref|YP_200988.1| hypothetical protein XOO2349 [Xanthomonas oryzae pv. oryzae KACC
10331]
gi|58426566|gb|AAW75603.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae KACC
10331]
Length = 187
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 70/155 (45%), Gaps = 34/155 (21%)
Query: 137 QFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNF-GLWLSYIFTGAAANFVSWLILPK 195
+ VT F HA+ HL N+ L+ FG+++E G L+Y AA VS ILP
Sbjct: 27 RLVTYGFIHADLGHLVFNMVTLFFFGRVIESVMAQLTGSVLTYPLFYLAALAVS--ILPS 84
Query: 196 --------NAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASA 247
N +S+GASGAV + +L++ W IL + I A A
Sbjct: 85 YLKNQKNPNYLSLGASGAVSAVLFAFILLQ---PWTIILVLFI-------------PAPA 128
Query: 248 GMSGTFIGGYSV-------QSINHIAHLSGALFGV 275
+ F GYS+ INH AHL+GA FGV
Sbjct: 129 IIYAVFYVGYSLWMDRCGGDRINHSAHLAGAAFGV 163
>gi|410728950|ref|ZP_11367038.1| putative membrane protein [Clostridium sp. Maddingley MBC34-26]
gi|410596504|gb|EKQ51173.1| putative membrane protein [Clostridium sp. Maddingley MBC34-26]
Length = 332
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 140 TAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVS 199
T AF H+ H++ N++ LYI G +++ G + Y + A+ +S+ + P N++S
Sbjct: 197 TCAFLHSGLIHIACNMYSLYIIGPQIQQIFGTVKYLIIYACSCLTASLLSYYMSP-NSIS 255
Query: 200 VGASGAVFGL 209
VGASGA+FGL
Sbjct: 256 VGASGAIFGL 265
>gi|148553364|ref|YP_001260946.1| rhomboid family protein [Sphingomonas wittichii RW1]
gi|148498554|gb|ABQ66808.1| Rhomboid family protein [Sphingomonas wittichii RW1]
Length = 209
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 10/131 (7%)
Query: 91 RRKPKKSVNGV------FWIILLNLGLYVADHV---FQVRSIKSLYLYHNFPAWYQFVTA 141
R P + N + +++L+ LG A + F + + + PAW +TA
Sbjct: 2 RLPPSRCTNAIAIGTTAIYLLLVLLGWSDAADIAGGFVPARLTGMEIPGALPAWITPLTA 61
Query: 142 AFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKN-AVSV 200
H HL N+ L G++VE G GL + Y+ AA + +L+ P + A +
Sbjct: 62 TLLHGGMLHLGFNMLMLVFCGRMVEAVIGPLGLAILYVVGAYAAAGMQFLVNPADGAPMI 121
Query: 201 GASGAVFGLFA 211
GASGA+ LFA
Sbjct: 122 GASGAISALFA 132
>gi|71731775|gb|EAO33834.1| Rhomboid-like protein [Xylella fastidiosa subsp. sandyi Ann-1]
Length = 202
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/155 (34%), Positives = 70/155 (45%), Gaps = 34/155 (21%)
Query: 137 QFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNF-GLWLSYIFTGAAANFVSWLILP- 194
+ +T F HA+ +HL N+ LY FG ++E G L+Y A VS ILP
Sbjct: 42 RLITYGFVHADISHLLFNMVTLYFFGSMIEAVMSELTGSLLTYPLFYLGALLVS--ILPS 99
Query: 195 --KNA-----VSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASA 247
KN +S+GASGAV + +VL++ W I+ + I A A
Sbjct: 100 YIKNQNNPKYLSLGASGAVSAVLFAAVLLQ---PWALIVVLFI-------------PAPA 143
Query: 248 GMSGTFIGGYSV-------QSINHIAHLSGALFGV 275
F GYS+ INH AHLSGA FGV
Sbjct: 144 IFYAVFYVGYSIWMGRRGDDGINHSAHLSGAAFGV 178
>gi|434397598|ref|YP_007131602.1| Rhomboid family protein [Stanieria cyanosphaera PCC 7437]
gi|428268695|gb|AFZ34636.1| Rhomboid family protein [Stanieria cyanosphaera PCC 7437]
Length = 235
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 122 SIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFT 181
S + L P VT+ F HA+ HL N+ FL+IFG +EEE G + Y+
Sbjct: 56 SFSGITLAQPVPEPLTLVTSQFLHASIAHLGFNMLFLWIFGNNIEEELGRVKYLIFYLSC 115
Query: 182 GAAANFVSWLILPKNAV-SVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQF 234
G A W + + S+GASGA+ G+ +L + KI+ V+ LG F
Sbjct: 116 GVLAALSQWYFSALSDIPSLGASGAIAGVMGAYIL---KFPSAKIITVIPLGFF 166
>gi|421879273|ref|ZP_16310744.1| Membrane-associated serine protease [Leuconostoc citreum LBAE C11]
gi|390446828|emb|CCF26864.1| Membrane-associated serine protease [Leuconostoc citreum LBAE C11]
Length = 229
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 130 HNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVS 189
HN A+++ +T F HA H+ +N+ L+ G + E G++ + Y F G N S
Sbjct: 56 HN-QAYWRLLTPVFLHAGIMHIVTNMLTLWFVGPIAEHAFGSWRFLMLYAFGGIVGNIFS 114
Query: 190 WLILPKNAVSVGASGAVFGLFA 211
+L+ P A+SVGAS A+F +FA
Sbjct: 115 YLLSPL-AISVGASSALFAMFA 135
>gi|302697719|ref|XP_003038538.1| hypothetical protein SCHCODRAFT_47563 [Schizophyllum commune H4-8]
gi|300112235|gb|EFJ03636.1| hypothetical protein SCHCODRAFT_47563 [Schizophyllum commune H4-8]
Length = 368
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 71/175 (40%), Gaps = 14/175 (8%)
Query: 42 KCLSNSPKLNLPIKLRPLRHPSLTLRSRLVCNMSGS-DMISQLELDKPEERRKPKKSVNG 100
+C+ N + + P+ +P +P L S + N+ +L D P P +
Sbjct: 55 ECVVNYREQHNPVSFKPTVNPMLGPSSSALINVGARFPPCMKLVDDIPPSFELPCMNTTD 114
Query: 101 VFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPA--WYQFVTAAFCHANWNHLSSNLFFL 158
LN Y + + +H+ W++F+T F HA HL N+F
Sbjct: 115 ------LNDATYCT-----IEELCGFGGFHDKEPNQWFRFITPIFLHAGIVHLILNMFAQ 163
Query: 159 YIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFAIS 213
+E E G+ G +L+Y G N + SVGASGA+FG A++
Sbjct: 164 VTVSAQIEREMGSGGFFLTYFAAGIFGNILGGNFALVGIPSVGASGAIFGTIAVT 218
>gi|260587072|ref|ZP_05852985.1| rhomboid protease GluP [Blautia hansenii DSM 20583]
gi|331082843|ref|ZP_08331965.1| hypothetical protein HMPREF0992_00889 [Lachnospiraceae bacterium
6_1_63FAA]
gi|260542562|gb|EEX23131.1| rhomboid protease GluP [Blautia hansenii DSM 20583]
gi|330400172|gb|EGG79821.1| hypothetical protein HMPREF0992_00889 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 220
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 64/146 (43%), Gaps = 16/146 (10%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+Y+ +++ F H HL +N+ L G +E G L Y G AN +S +
Sbjct: 75 YYRLISSMFLHFGIQHLGNNMLVLLFLGDCLERNIGKIKYLLIYFLGGIGANVLSIYLEI 134
Query: 195 KNA---VSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSG 251
KN +S GASGAVF + I L+ + R +E Q +V AG+S
Sbjct: 135 KNGKYFISAGASGAVFAV--IGALIYIVIANRGRIENFTTRQLIV---------MAGLSL 183
Query: 252 TFIGGYSVQSINHIAHLSGALFGVFL 277
F G + +++ AH G + G L
Sbjct: 184 YF--GMTSTGVDNAAHFGGLISGFIL 207
>gi|218895361|ref|YP_002443772.1| rhomboid family protein [Bacillus cereus G9842]
gi|218543885|gb|ACK96279.1| rhomboid family protein [Bacillus cereus G9842]
Length = 190
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T+ H + H SN FL+ G +E++ G+F ++ + +G N S++I+P
Sbjct: 47 WWRVITSLLVHVDLQHFLSNSIFLFALGSSIEKQLGHFSFFILFFISGIFGNISSYIIMP 106
Query: 195 KNAVSVGASGAVFGLFA 211
+ GASG +FGL
Sbjct: 107 PEYIHAGASGGIFGLLG 123
>gi|422759921|ref|ZP_16813683.1| hypothetical protein SDD27957_10405 [Streptococcus dysgalactiae
subsp. dysgalactiae ATCC 27957]
gi|322412756|gb|EFY03664.1| hypothetical protein SDD27957_10405 [Streptococcus dysgalactiae
subsp. dysgalactiae ATCC 27957]
Length = 224
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 62/129 (48%), Gaps = 12/129 (9%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAAN-FVSWLILP 194
++ VT F H W H N LY G++ EE G+ L Y+F+G N F W L
Sbjct: 58 WRLVTPIFVHIGWGHFFVNALTLYFVGQMAEEIWGSHRFLLLYVFSGIMGNAFTMW--LT 115
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSW-------DWRKILEVLILGQFVVEKVMEAAQASA 247
V+ G S ++FGLFA +++V ++ + K + LI+ V+ VM + A
Sbjct: 116 PETVAAGGSTSLFGLFA-AIMVLGAFGNNQALRELGKAYQTLIIVNLVLNLVMPNV-SMA 173
Query: 248 GMSGTFIGG 256
G G +GG
Sbjct: 174 GHVGGIVGG 182
>gi|188576423|ref|YP_001913352.1| peptidase, S54 (rhomboid) family [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|188520875|gb|ACD58820.1| peptidase, S54 (rhomboid) family [Xanthomonas oryzae pv. oryzae
PXO99A]
Length = 202
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 70/155 (45%), Gaps = 34/155 (21%)
Query: 137 QFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNF-GLWLSYIFTGAAANFVSWLILPK 195
+ VT F HA+ HL N+ L+ FG+++E G L+Y AA VS ILP
Sbjct: 42 RLVTYGFIHADLGHLVFNMVTLFFFGRVIESVMAQLTGSVLTYPLFYLAALAVS--ILPS 99
Query: 196 --------NAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASA 247
N +S+GASGAV + +L++ W IL + I A A
Sbjct: 100 YLKNQKNPNYLSLGASGAVSAVLFAFILLQ---PWTIILVLFI-------------PAPA 143
Query: 248 GMSGTFIGGYSV-------QSINHIAHLSGALFGV 275
+ F GYS+ INH AHL+GA FGV
Sbjct: 144 IIYAVFYVGYSLWMDRCGGDRINHSAHLAGAAFGV 178
>gi|117928035|ref|YP_872586.1| rhomboid family protein [Acidothermus cellulolyticus 11B]
gi|117648498|gb|ABK52600.1| Rhomboid family protein [Acidothermus cellulolyticus 11B]
Length = 264
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 121 RSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIF 180
R + + Y H PA +T+ F H +W H+ N+ FLY+FG VE+ G F L Y+
Sbjct: 81 RIVCAHYFPHKIPA-LSVLTSMFLHGSWLHILGNMLFLYVFGNNVEDRFGRFRFLLFYLV 139
Query: 181 TGAAANFVSWLILPKNAVS-VGASGAVFGL 209
+G A + L + +GASGA+ G+
Sbjct: 140 SGYVAAYGFALAFRNSDTPIIGASGAIAGV 169
>gi|325831232|ref|ZP_08164524.1| peptidase, S54 family [Eggerthella sp. HGA1]
gi|325486833|gb|EGC89280.1| peptidase, S54 family [Eggerthella sp. HGA1]
Length = 263
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSW---- 190
Y+FVT F H + HL N+ LY G+++E G Y G N VS+
Sbjct: 89 LYRFVTPMFLHMDLMHLGFNMVALYSVGEVLERTLGRGNYLALYFIAGITGNAVSYAADV 148
Query: 191 LILPKNAVSVGASGAVFGLF-AISVLVKMSWDWRKI 225
L+ +AVS GAS +VFGLF A+++L + R +
Sbjct: 149 LLGGGSAVSAGASTSVFGLFVAVALLAVLHKGNRSL 184
>gi|402838247|ref|ZP_10886757.1| peptidase, S54 family [Eubacteriaceae bacterium OBRC8]
gi|402273506|gb|EJU22705.1| peptidase, S54 family [Eubacteriaceae bacterium OBRC8]
Length = 190
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 53/102 (51%), Gaps = 3/102 (2%)
Query: 134 AWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLIL 193
+ + T H++W+H +N+ + I G L+EE+ G+F + + + T + VS +
Sbjct: 52 TYIRLFTHVLGHSDWSHYINNMLLMLIVGPLLEEKYGSFNIIIMILITAFISGIVSIIFF 111
Query: 194 PKNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFV 235
P N +GASG VF +S + S+++ KI IL FV
Sbjct: 112 P-NVALLGASGVVFAFILVSSIT--SFEYGKIPLTFILVAFV 150
>gi|389818133|ref|ZP_10208574.1| hypothetical protein A1A1_11051 [Planococcus antarcticus DSM 14505]
gi|388464065|gb|EIM06401.1| hypothetical protein A1A1_11051 [Planococcus antarcticus DSM 14505]
Length = 202
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++F T F H HL N+F L++FG +E G Y+ G A+ ++ + P
Sbjct: 57 WWRFFTPIFLHGGLMHLLFNMFSLFLFGPELERLTGKVRFTTIYLSAGLFASAATYFLQP 116
Query: 195 KNAVSVGASGAVFGLFA 211
+ VGASGA+FG+F
Sbjct: 117 LDYAHVGASGAIFGVFG 133
>gi|386335464|ref|YP_006031634.1| transmembrane hypothetical [Ralstonia solanacearum Po82]
gi|334197914|gb|AEG71098.1| transmembrane hypothetical [Ralstonia solanacearum Po82]
Length = 569
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ ++A F HA HL+ N+ LY G VE G L+Y+ G + +S
Sbjct: 253 WWRLLSATFLHAGVLHLAINMVGLYATGIAVERIYGPAAYLLTYLGAGLLGSALSLSFAA 312
Query: 195 KNAVSVGASGAVFGL 209
++A+ VGASGAVFG+
Sbjct: 313 QHAIGVGASGAVFGV 327
>gi|340356603|ref|ZP_08679245.1| S54 family unassigned serine peptidase [Sporosarcina newyorkensis
2681]
gi|339620530|gb|EGQ25099.1| S54 family unassigned serine peptidase [Sporosarcina newyorkensis
2681]
Length = 202
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 67/141 (47%), Gaps = 16/141 (11%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+++ VT F H HL N+F L+IFG +E+ G Y+ G + ++ +
Sbjct: 57 YWRLVTPMFLHGGLTHLLFNMFSLFIFGPELEKIAGKARFITIYMLAGLFGDVATYFLQS 116
Query: 195 KNAVSVGASGAVFGLF-AISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTF 253
+ +GASGA+FG+F A LV + L+ +IL V+ VM TF
Sbjct: 117 GDYRHLGASGAIFGVFGAFGALVYYTKHVFPQLKQVILPIIVISVVM-----------TF 165
Query: 254 IGGYSVQSINHIAHLSGALFG 274
+G +IN AH++G + G
Sbjct: 166 VG----TNINVTAHIAGLITG 182
>gi|219850368|ref|YP_002464801.1| rhomboid family protein [Chloroflexus aggregans DSM 9485]
gi|219544627|gb|ACL26365.1| Rhomboid family protein [Chloroflexus aggregans DSM 9485]
Length = 232
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W T+ F H W HL SN+ LYIFG VE+ G+ + Y+ G AA P
Sbjct: 62 WLTVFTSMFMHGGWFHLFSNMLALYIFGDNVEDRMGSQRYLIFYLLCGVAAALTHVFFNP 121
Query: 195 KNAV-SVGASGAVFGLFAISVL 215
+ + +VGASGA+ G+ A +L
Sbjct: 122 TSPIPTVGASGALSGVLAAYLL 143
>gi|410096061|ref|ZP_11291051.1| hypothetical protein HMPREF1076_00229 [Parabacteroides goldsteinii
CL02T12C30]
gi|409227132|gb|EKN20033.1| hypothetical protein HMPREF1076_00229 [Parabacteroides goldsteinii
CL02T12C30]
Length = 197
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 66/150 (44%), Gaps = 21/150 (14%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEG--NFGLW--LSYIFTGAAANFVSW 190
WY+ +T F HA+ HL N+F + FG +E+ G FG W L F G +
Sbjct: 40 WYRLITHGFVHADMTHLLVNMFTFWSFGTYIEKVFGYLGFGTWGFLGLYFGGMIFASIYD 99
Query: 191 LILPKNA---VSVGASGAVFGLFAISVLVKMSWDWRKILEVLIL---GQFVVEKVMEAAQ 244
L+ N VS+GASGAV + +L W KIL I+ G + Q
Sbjct: 100 LVKHHNDPYYVSIGASGAVSAILFSYILFD---PWSKILLFAIIPVPGIIFGVVYLAYCQ 156
Query: 245 ASAGMSGTFIGGYSVQSINHIAHLSGALFG 274
A +G +INH AH GA++G
Sbjct: 157 YMAKRAG--------DNINHNAHFYGAVYG 178
>gi|356557245|ref|XP_003546928.1| PREDICTED: rhomboid-related protein 3-like [Glycine max]
Length = 324
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 76/154 (49%), Gaps = 25/154 (16%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
++F + F HA HL +N+F L G +E+E G + L Y+ +G + +S L L +
Sbjct: 111 WRFFSCMFLHAGVVHLLANMFSLLFIGVRLEKEFGFLKIGLLYVLSGFGGSVLSVLHLKE 170
Query: 196 ---NAVSVGASGAVFGLFAISVLVKMSWDW----RKILEVLILGQFVVEKVMEAAQASAG 248
N VSVGASGA+FGL ++L ++ +W K+L +L Q +A
Sbjct: 171 SEANTVSVGASGALFGLLG-AMLSELLTNWSIYANKVLYPCLL------------QCAAL 217
Query: 249 MSGTFIGGYSVQ-----SINHIAHLSGALFGVFL 277
S I G ++ +++ AH+ G L G FL
Sbjct: 218 TSLLIIVGLNLAVGFLPHVDNSAHVGGFLAGYFL 251
>gi|374323241|ref|YP_005076370.1| rhomboid family protein [Paenibacillus terrae HPL-003]
gi|357202250|gb|AET60147.1| rhomboid family protein [Paenibacillus terrae HPL-003]
Length = 207
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 71/145 (48%), Gaps = 16/145 (11%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVS---WLI 192
+++V+A F HA ++HL N F + +F +E G+F L Y+ TG N +S + +
Sbjct: 62 WRYVSAMFLHAGFDHLFFNSFAILVFAPPLERLLGSFRYALLYLATGIVGNVMSIAHYNM 121
Query: 193 LPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGT 252
+ VSVGASGA++G++ + V + R +++ E + G
Sbjct: 122 AAETTVSVGASGAIYGIYGAFLYVALFQ--RTLMD---------EASRKTLYTLLGFGIL 170
Query: 253 FIGGYSVQSINHIAHLSGALFGVFL 277
F ++V +IN AH G L G FL
Sbjct: 171 F--SFAVANINWTAHFGGLLSGFFL 193
>gi|239814367|ref|YP_002943277.1| rhomboid family protein [Variovorax paradoxus S110]
gi|239800944|gb|ACS18011.1| Rhomboid family protein [Variovorax paradoxus S110]
Length = 492
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 74/159 (46%), Gaps = 28/159 (17%)
Query: 133 PAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAAN--FVSW 190
P + ++TAAF HA+ HL N+ FL++FG VE G G +L++ GAA + W
Sbjct: 149 PKPWTWITAAFLHADTGHLLGNMLFLFLFGFSVELALGR-GTYLAFYLLGAAGSSLLSGW 207
Query: 191 LILPKNAVSVGASGAV---FGLFAISVLVKM---------SWDWRKILEVLILGQFVVEK 238
+GASGA+ G++A+ ++ +++ +L+L ++ +
Sbjct: 208 AYAGNGGHGLGASGAISALMGMYAVMYRLRRIRFFYQLFFYFNYVTAPALLLLPAWIANE 267
Query: 239 VMEAAQASAGMSGTFIGGYSVQSINHIAHLSGALFGVFL 277
+M+ + QS+ ++AHL G L G L
Sbjct: 268 LMQQWRGD-------------QSVGYMAHLGGLLTGAAL 293
>gi|398343978|ref|ZP_10528681.1| intramembrane serine protease [Leptospira inadai serovar Lyme str.
10]
Length = 220
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 51/86 (59%), Gaps = 6/86 (6%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGA-----AANFVSW 190
++++ AF HA++ HL N+ FL+ G++VE + G WL + F GA + V
Sbjct: 48 WKWIGMAFLHADFTHLFWNMLFLFFLGRIVEYKVGK-AKWLLFFFMGAFISGFLDSLVRG 106
Query: 191 LILPKNAVSVGASGAVFGLFAISVLV 216
L L ++ ++GASGAV GL A++ L+
Sbjct: 107 LFLDDSSPAIGASGAVSGLAAVAALL 132
>gi|182685029|ref|YP_001836776.1| hypothetical protein SPCG_2059 [Streptococcus pneumoniae CGSP14]
gi|182630363|gb|ACB91311.1| hypothetical protein SPCG_2059 [Streptococcus pneumoniae CGSP14]
Length = 226
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 62/129 (48%), Gaps = 11/129 (8%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
++ ++A F H W H N+ LY G+ VEE G+ + Y+ +G N ++ PK
Sbjct: 60 WRLLSAIFVHIGWEHFIVNMLSLYYLGRQVEEIFGSKQFFFLYLLSGMMGNLFVFVFSPK 119
Query: 196 NAVSVGASGAVFGLFAISVLVK----------MSWDWRKILEVLILGQFVVEKVMEAAQA 245
+ ++ GAS +++GLFA ++++ + + + V I+G ++ + A
Sbjct: 120 S-LAAGASTSLYGLFAAIIILRYATRNPYIQQLGQSYLTLFVVNIIGSVLIPGISLAGHI 178
Query: 246 SAGMSGTFI 254
+ G F+
Sbjct: 179 GGAVGGAFL 187
>gi|157363708|ref|YP_001470475.1| rhomboid family protein [Thermotoga lettingae TMO]
gi|157314312|gb|ABV33411.1| Rhomboid family protein [Thermotoga lettingae TMO]
Length = 230
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 133 PAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSW-L 191
P W F++ F H W+HL N++FL+IFG +E+ G+ ++ YI +G A+ + L
Sbjct: 73 PKWISFISHMFVHGGWSHLIGNMWFLFIFGDNLEDNLGHIRFFIFYISSGILASLTHFAL 132
Query: 192 ILPKNAVSVGASGAV 206
+ VGASGA+
Sbjct: 133 NINSQLPMVGASGAI 147
>gi|403387738|ref|ZP_10929795.1| membrane associated peptidase [Clostridium sp. JC122]
Length = 216
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 73/143 (51%), Gaps = 16/143 (11%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+Y+ TA F HA+ HL+ N+ L G +VE+ G + YI + A++ S+++
Sbjct: 69 YYRLFTAGFLHASVLHLTLNMIALNAIGSIVEKVLGKGKFIIVYILSLIFASYGSYVVAN 128
Query: 195 KN---AVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSG 251
+SVGASGA+FGL S+L+ + + + + G+ V+ + E +
Sbjct: 129 VKLGIGISVGASGAIFGLLG-SLLIIVFLNKK------VFGKTVLRGITEVIVVN----- 176
Query: 252 TFIGGYSVQSINHIAHLSGALFG 274
+ G+ V +I+ AH++G + G
Sbjct: 177 -LLIGFFVPNIDITAHVTGGIAG 198
>gi|317488063|ref|ZP_07946642.1| rhomboid family protein [Eggerthella sp. 1_3_56FAA]
gi|316912835|gb|EFV34365.1| rhomboid family protein [Eggerthella sp. 1_3_56FAA]
Length = 279
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSW----L 191
Y+FVT F H + HL N+ LY G+++E G Y G N VS+ L
Sbjct: 106 YRFVTPMFLHMDLMHLGFNMVALYSVGEVLERTLGRGNYLALYFIAGITGNAVSYAADVL 165
Query: 192 ILPKNAVSVGASGAVFGLF 210
+ +AVS GAS +VFGLF
Sbjct: 166 LGGGSAVSAGASTSVFGLF 184
>gi|225849971|ref|YP_002730205.1| rhomboid family protein [Persephonella marina EX-H1]
gi|225646578|gb|ACO04764.1| rhomboid family protein [Persephonella marina EX-H1]
Length = 224
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 9/103 (8%)
Query: 116 HVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLW 175
H F + + +YL W + +T+ F H ++ HL N+ FL+IFG VE+ G F
Sbjct: 44 HQFGLLPVDIIYL-----NWEKILTSMFLHGSFAHLFGNMLFLWIFGNNVEDALGRFKFV 98
Query: 176 LSYIFTGAAA----NFVSWLILPKNAVSVGASGAVFGLFAISV 214
+ YI +G A +F+S + +GASGA+ G+ A V
Sbjct: 99 IFYILSGVGAAVTQSFISLAFGNISTPMIGASGAISGIMAAYV 141
>gi|449117125|ref|ZP_21753569.1| hypothetical protein HMPREF9726_01554 [Treponema denticola H-22]
gi|448952389|gb|EMB33193.1| hypothetical protein HMPREF9726_01554 [Treponema denticola H-22]
Length = 209
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 78/165 (47%), Gaps = 19/165 (11%)
Query: 92 RKPKKSV--NGVFWIILLNLGLYVADHVFQVRSIKSLY-----LYHNFPAWYQFVTAAFC 144
RKP K N V I L+N G++V +F R++ + L ++QF T F
Sbjct: 5 RKPFKYTYKNAVLIIALINAGVFVFTSLF--RNLSAYLGLVPILVVEAQTYWQFFTYQFV 62
Query: 145 HANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNA----VSV 200
H ++ HL+ N+ L+ FG VE + G L Y+ G +S+L+ +
Sbjct: 63 HGDFFHLAFNMLALFFFGVPVECKIGTKEFILYYLLIGTIGGILSFLVYAATGFYTITLI 122
Query: 201 GASGAVFG---LFAISVLVKMSWDWRKI---LEVLILGQFVVEKV 239
GASGA+FG L+A+ + + W I +LILG V+E +
Sbjct: 123 GASGAIFGVLLLYAVLYPNSVIYIWGVIPVPAPLLILGYAVIELI 167
>gi|443310406|ref|ZP_21040060.1| putative membrane protein [Synechocystis sp. PCC 7509]
gi|442779562|gb|ELR89801.1| putative membrane protein [Synechocystis sp. PCC 7509]
Length = 238
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 50/103 (48%), Gaps = 4/103 (3%)
Query: 133 PAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLI 192
P W T+ F H HL N+ FL+IFG VE+ G+ + Y+ G A W
Sbjct: 67 PEWITLFTSQFLHGGILHLGGNMLFLWIFGNNVEDRLGHVKYLIFYLACGVLAGLTQWFF 126
Query: 193 LPKNAV-SVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQF 234
+ + S+GASGA+ G+ +L + ++L ++ LG F
Sbjct: 127 SQNSGIPSLGASGAIAGVMGAYIL---RFPRAEVLTLIPLGLF 166
>gi|304382432|ref|ZP_07364931.1| rhomboid family protein [Prevotella marshii DSM 16973]
gi|304336440|gb|EFM02677.1| rhomboid family protein [Prevotella marshii DSM 16973]
Length = 316
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 87/211 (41%), Gaps = 44/211 (20%)
Query: 104 IILLNLGLYVADHVFQVRSIK--SLYLYHNFPA----WYQFVTAAFCHANWNHLSSNLFF 157
++++N+ +++A +V +R I L H FPA YQ T F H W HL N+F
Sbjct: 16 LLIINVLVFLAAYVLGIRGIDLNGLLGLHFFPASHFGIYQLFTYLFMHGGWAHLFFNMFA 75
Query: 158 LYIFGKLVEEEEGNFGLWLSYIFTGAAA-------NFVSWLILPKNA------------- 197
L++FG +VE G YI G A FV + +L +
Sbjct: 76 LWMFGCVVENAWGPKKFLFYYIACGVGAGLLQEVAQFVQFYVLISDQYAGVSFSDVFHIA 135
Query: 198 ----------VSVGASGAVFG-LFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQAS 246
+VGASGAV+G L A ++ + L + I ++ V
Sbjct: 136 QSMSSQLNGWTTVGASGAVYGILLAFGMIYPEQRIFVFPLPIPIKAKWFV-------MIY 188
Query: 247 AGMSGTFIGGYSVQSINHIAHLSGALFGVFL 277
AG+ G S + H AHL G LFG F+
Sbjct: 189 AGIELFSALGTSSDGVAHFAHLGGMLFGYFM 219
>gi|340718437|ref|XP_003397674.1| PREDICTED: presenilins-associated rhomboid-like protein,
mitochondrial-like [Bombus terrestris]
Length = 343
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 68/142 (47%), Gaps = 11/142 (7%)
Query: 138 FVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWL---ILP 194
FVT F H + HL N++ LY F K+ + G Y+ +G ++F S+L ++
Sbjct: 180 FVT--FSHCSLLHLIVNMYVLYGFSKIAVAQLGREQFLALYLISGVVSSFSSYLYKAVVG 237
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFI 254
S+GASGA+ G+F V + + I+ L + +F VM+A +
Sbjct: 238 IRDPSLGASGAIMGVFGF-VCTQFPNAYLSII-FLPMFKFTANTVMKAVMGLDTLGCLM- 294
Query: 255 GGYSVQSINHIAHLSGALFGVF 276
Q +H AHL GALFG+F
Sbjct: 295 ---RWQRFDHAAHLGGALFGIF 313
>gi|399992372|ref|YP_006572612.1| rhomboid protein-like protein [Phaeobacter gallaeciensis DSM 17395
= CIP 105210]
gi|398656927|gb|AFO90893.1| rhomboid protein-like protein [Phaeobacter gallaeciensis DSM 17395
= CIP 105210]
Length = 258
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 137 QFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKN 196
+T+ F H +W HL N+ FL+IFG +E+E G+ Y+ +G A + P +
Sbjct: 63 TLLTSTFLHGSWMHLGGNMLFLWIFGDNMEDEMGHVPFIAFYLVSGIGAGLIHVASAPYS 122
Query: 197 AVS-VGASGAVFGLFAISVLV 216
V VGASGA+ G+ +L+
Sbjct: 123 LVPLVGASGAIAGVMGGYLLL 143
>gi|399889571|ref|ZP_10775448.1| hypothetical protein CarbS_13682 [Clostridium arbusti SL206]
Length = 323
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 131 NFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSW 190
N +Y+ T F H+ H++SN++ LY G LVE G + Y+ +G A+ S+
Sbjct: 180 NSGEYYRLFTCMFLHSGIVHIASNMYSLYSIGGLVESIFGRKKYIIMYLLSGLIASLFSY 239
Query: 191 LILPKNAVSVGASGAVFGLFA 211
+ + +SVGASGA+FG+
Sbjct: 240 VF--SSGISVGASGAIFGVLG 258
>gi|417987040|ref|ZP_12627602.1| GlpG family membrane protein [Lactobacillus casei 32G]
gi|418011095|ref|ZP_12650861.1| GlpG family membrane protein [Lactobacillus casei Lc-10]
gi|410524104|gb|EKP99021.1| GlpG family membrane protein [Lactobacillus casei 32G]
gi|410552732|gb|EKQ26746.1| GlpG family membrane protein [Lactobacillus casei Lc-10]
Length = 227
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 117 VFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWL 176
VF + L LY W++ +T F H H+ N F LY G++ E+ G++ +L
Sbjct: 44 VFYGARLNPLILYGQ---WWRLITPVFVHIGLMHILVNGFSLYYLGQMTEQLFGHWRFFL 100
Query: 177 SYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVL 229
Y +G A N S+ P N ++ GAS A+FGL +++ S+ ++ L
Sbjct: 101 LYFISGFAGNVASFAFSP-NTLAAGASTAIFGLLGACLMLGDSFKENPVIRQL 152
>gi|410101899|ref|ZP_11296827.1| hypothetical protein HMPREF0999_00599 [Parabacteroides sp. D25]
gi|409239697|gb|EKN32481.1| hypothetical protein HMPREF0999_00599 [Parabacteroides sp. D25]
Length = 201
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 68/151 (45%), Gaps = 21/151 (13%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGL----WLSYIFTGAAANFVSW 190
+Y+ VT F HA+ HL N+F + FG +E G +L++ F G +
Sbjct: 40 YYRIVTHGFIHADMTHLLVNMFTFWSFGLYIERTFRYMGFGSGAYLAFYFGGMIVASLYD 99
Query: 191 LILPKNA---VSVGASGAVFGLFAISVLVKMSWDWRKILEVLIL---GQFVVEKVMEAAQ 244
LI +N VS+GASGAV + S+ + W KIL +L G + Q
Sbjct: 100 LIKRRNDPYYVSIGASGAVSAVLFTSIFLD---PWGKILFFAVLPVPGIVFGLLYLAYCQ 156
Query: 245 ASAGMSGTFIGGYSVQSINHIAHLSGALFGV 275
A +G +INH AH GA++G+
Sbjct: 157 YMAKQTG--------DNINHNAHFYGAIYGL 179
>gi|418183637|ref|ZP_12820191.1| rhomboid family protein [Streptococcus pneumoniae GA43380]
gi|353846655|gb|EHE26683.1| rhomboid family protein [Streptococcus pneumoniae GA43380]
Length = 225
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 62/129 (48%), Gaps = 11/129 (8%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
++ ++A F H W H N+ LY G+ VEE G+ + Y+ +G N ++ PK
Sbjct: 59 WRLLSAIFVHIGWEHFIVNMLSLYYLGRQVEEIFGSKQFFFLYLLSGMMGNLFVFVFSPK 118
Query: 196 NAVSVGASGAVFGLFAISVLVK----------MSWDWRKILEVLILGQFVVEKVMEAAQA 245
+ ++ GAS +++GLFA ++++ + + + V I+G ++ + A
Sbjct: 119 S-LAAGASTSLYGLFAAIIILRYATRNPYIQQLGQSYLTLFVVNIIGSVLIPGISLAGHI 177
Query: 246 SAGMSGTFI 254
+ G F+
Sbjct: 178 GGAVGGAFL 186
>gi|255013867|ref|ZP_05285993.1| hypothetical protein B2_08162 [Bacteroides sp. 2_1_7]
gi|298375549|ref|ZP_06985506.1| rhomboid family membrane protein [Bacteroides sp. 3_1_19]
gi|298268049|gb|EFI09705.1| rhomboid family membrane protein [Bacteroides sp. 3_1_19]
Length = 177
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 68/151 (45%), Gaps = 21/151 (13%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGL----WLSYIFTGAAANFVSW 190
+Y+ VT F HA+ HL N+F + FG +E G +L++ F G +
Sbjct: 16 YYRIVTHGFIHADMTHLLVNMFTFWSFGLYIERTFRYMGFGSGAYLAFYFGGMIVASLYD 75
Query: 191 LILPKNA---VSVGASGAVFGLFAISVLVKMSWDWRKILEVLIL---GQFVVEKVMEAAQ 244
LI +N VS+GASGAV + S+ + W KIL +L G + Q
Sbjct: 76 LIKRRNDPYYVSIGASGAVSAVLFTSIFLD---PWGKILFFAVLPVPGIVFGLLYLAYCQ 132
Query: 245 ASAGMSGTFIGGYSVQSINHIAHLSGALFGV 275
A +G +INH AH GA++G+
Sbjct: 133 YMAKQTG--------DNINHNAHFYGAIYGL 155
>gi|326504866|dbj|BAK06724.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 418
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T + HA H+ +N+ L + G +E+E G + Y+ +G + +S L +
Sbjct: 157 WWRLITCIWLHAGVIHILANMLSLLMIGIRLEKEFGFLRIGTLYVISGVGGSLLSALFMV 216
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDW 222
N +SVGASGA+FGL S+L ++ +W
Sbjct: 217 SN-ISVGASGALFGLLG-SMLSELITNW 242
>gi|306826307|ref|ZP_07459641.1| rhomboid family protein [Streptococcus sp. oral taxon 071 str.
73H25AP]
gi|304431583|gb|EFM34565.1| rhomboid family protein [Streptococcus sp. oral taxon 071 str.
73H25AP]
Length = 226
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 58/125 (46%), Gaps = 11/125 (8%)
Query: 140 TAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVS 199
+A F H W H N+ LY G+ VEE G+ +L Y+ +G N + PK V+
Sbjct: 63 SAIFVHIGWEHFIVNMISLYFLGQQVEEIFGSKQFFLLYLLSGMMGNLFVFAFTPK-VVA 121
Query: 200 VGASGAVFGLFAISVLVK----------MSWDWRKILEVLILGQFVVEKVMEAAQASAGM 249
GAS +++GLFA ++++ + + + + I+G ++ + A +
Sbjct: 122 AGASTSLYGLFAAIIVLRYATRNPYIQQLGQSYLTLFVINIIGSVLIPGISLAGHIGGAV 181
Query: 250 SGTFI 254
G F+
Sbjct: 182 GGAFL 186
>gi|82703577|ref|YP_413143.1| rhomboid-like protein [Nitrosospira multiformis ATCC 25196]
gi|82411642|gb|ABB75751.1| Rhomboid-like protein [Nitrosospira multiformis ATCC 25196]
Length = 371
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 43/77 (55%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ TA F H HL+ NL+ L+ G+LVE G+ Y +G A N +S +
Sbjct: 63 WWRLGTAMFLHFGLVHLTLNLWALWDAGQLVERMYGHARFTALYFASGLAGNLLSLVAHK 122
Query: 195 KNAVSVGASGAVFGLFA 211
A+S GASGA+FGL+
Sbjct: 123 GLAISGGASGAIFGLYG 139
>gi|329944719|ref|ZP_08292798.1| peptidase, S54 family [Actinomyces sp. oral taxon 170 str. F0386]
gi|328529855|gb|EGF56745.1| peptidase, S54 family [Actinomyces sp. oral taxon 170 str. F0386]
Length = 236
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTG-AAANFVSWLILP 194
++F+T AF HAN+ HL N++ L++ G +E G + Y+ + + + WL P
Sbjct: 70 WRFLTTAFLHANYMHLGFNMWALWVLGGALEPVLGRWRFTAVYLLSALGGSTAIYWLSWP 129
Query: 195 KN----AVSVGASGAVFGLFAISVLVK 217
++VGASGAVFGLF+ +V+
Sbjct: 130 DTNSWVTMTVGASGAVFGLFSTMFVVQ 156
>gi|194397379|ref|YP_002038682.1| S54 (rhomboid) family peptidase [Streptococcus pneumoniae G54]
gi|418122152|ref|ZP_12759092.1| rhomboid family protein [Streptococcus pneumoniae GA44194]
gi|419492016|ref|ZP_14031747.1| rhomboid family protein [Streptococcus pneumoniae GA47179]
gi|419533286|ref|ZP_14072798.1| rhomboid family protein [Streptococcus pneumoniae GA47794]
gi|421275942|ref|ZP_15726768.1| rhomboid family protein [Streptococcus pneumoniae GA52612]
gi|194357046|gb|ACF55494.1| peptidase, S54 (rhomboid) family protein [Streptococcus pneumoniae
G54]
gi|353790481|gb|EHD70863.1| rhomboid family protein [Streptococcus pneumoniae GA44194]
gi|379591097|gb|EHZ55926.1| rhomboid family protein [Streptococcus pneumoniae GA47179]
gi|379604189|gb|EHZ68950.1| rhomboid family protein [Streptococcus pneumoniae GA47794]
gi|395871696|gb|EJG82798.1| rhomboid family protein [Streptococcus pneumoniae GA52612]
Length = 225
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 62/129 (48%), Gaps = 11/129 (8%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
++ ++A F H W H N+ LY G+ VEE G+ + Y+ +G N ++ PK
Sbjct: 59 WRLLSAIFVHIGWEHFIVNMLSLYYLGRQVEEIFGSKQFFFLYLLSGMMGNLFVFVFSPK 118
Query: 196 NAVSVGASGAVFGLFAISVLVK----------MSWDWRKILEVLILGQFVVEKVMEAAQA 245
+ ++ GAS +++GLFA ++++ + + + V I+G ++ + A
Sbjct: 119 S-LAAGASTSLYGLFAAIIILRYATRNPYIQQLGQSYLTLFVVNIIGSVLIPGISLAGHI 177
Query: 246 SAGMSGTFI 254
+ G F+
Sbjct: 178 GGAVGGAFL 186
>gi|229917793|ref|YP_002886439.1| rhomboid family protein [Exiguobacterium sp. AT1b]
gi|229469222|gb|ACQ70994.1| Rhomboid family protein [Exiguobacterium sp. AT1b]
Length = 241
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ VTA F H + HL N F L IFG +E G+ L Y+F GA AN ++ +
Sbjct: 56 WYRLVTANFIHLSLGHLLFNSFALIIFGPAMERMVGHVKFALFYVFAGALANLFTYFTVS 115
Query: 195 K-NAVSVGASGAVFGLFAISVLV 216
+ GASGA+ + V +
Sbjct: 116 NLFYLQAGASGAILAILGFYVFI 138
>gi|380488088|emb|CCF37613.1| rhomboid family protein [Colletotrichum higginsianum]
Length = 572
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++F+T F HA H+ NL GK +E G+ +L Y+ G N +
Sbjct: 334 WFRFITPIFLHAGLIHIGFNLLLQMTIGKEMEIAIGSIRFFLVYVSAGIFGNVMGANYAG 393
Query: 195 KNAVSVGASGAVFGLFAISVLVKM-SWDWRK 224
A S GASGA+FG+ A+++L + SW R+
Sbjct: 394 VMAASTGASGALFGVIALTLLDLLYSWKDRR 424
>gi|168699238|ref|ZP_02731515.1| Rhomboid-like protein [Gemmata obscuriglobus UQM 2246]
Length = 418
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T F H H+ N++ L G LVE GN G ++Y+ +G + S L L
Sbjct: 121 WWRALTCMFVHIGILHILMNMWVLSATGPLVERMLGNAGFLVAYLVSGLGGSLAS-LWLN 179
Query: 195 KNAVSVGASGAVFGLFA 211
VS GASGAVFG++
Sbjct: 180 PGVVSAGASGAVFGIYG 196
>gi|149002922|ref|ZP_01827833.1| peptidase, S54 (rhomboid) family protein [Streptococcus pneumoniae
SP14-BS69]
gi|237650573|ref|ZP_04524825.1| hypothetical protein SpneC1_07597 [Streptococcus pneumoniae CCRI
1974]
gi|237821713|ref|ZP_04597558.1| hypothetical protein SpneC19_05287 [Streptococcus pneumoniae CCRI
1974M2]
gi|303256057|ref|ZP_07342079.1| hypothetical protein CGSSpBS455_11165 [Streptococcus pneumoniae
BS455]
gi|303259595|ref|ZP_07345571.1| hypothetical protein CGSSp9vBS293_08224 [Streptococcus pneumoniae
SP-BS293]
gi|303262040|ref|ZP_07347985.1| hypothetical protein CGSSp14BS292_05324 [Streptococcus pneumoniae
SP14-BS292]
gi|303264496|ref|ZP_07350415.1| hypothetical protein CGSSpBS397_01060 [Streptococcus pneumoniae
BS397]
gi|303266783|ref|ZP_07352664.1| hypothetical protein CGSSpBS457_02247 [Streptococcus pneumoniae
BS457]
gi|303268997|ref|ZP_07354780.1| hypothetical protein CGSSpBS458_00070 [Streptococcus pneumoniae
BS458]
gi|387760175|ref|YP_006067153.1| rhomboid family membrane protein [Streptococcus pneumoniae INV200]
gi|418077305|ref|ZP_12714534.1| rhomboid family protein [Streptococcus pneumoniae GA47502]
gi|418140429|ref|ZP_12777250.1| rhomboid family protein [Streptococcus pneumoniae GA13338]
gi|418144691|ref|ZP_12781486.1| rhomboid family protein [Streptococcus pneumoniae GA13494]
gi|418167745|ref|ZP_12804395.1| rhomboid family protein [Streptococcus pneumoniae GA17971]
gi|418181455|ref|ZP_12818020.1| rhomboid family protein [Streptococcus pneumoniae GA41688]
gi|419443494|ref|ZP_13983514.1| rhomboid family protein [Streptococcus pneumoniae GA13224]
gi|419458631|ref|ZP_13998570.1| rhomboid family protein [Streptococcus pneumoniae GA02254]
gi|419515591|ref|ZP_14055213.1| rhomboid family protein [Streptococcus pneumoniae England14-9]
gi|421237182|ref|ZP_15693774.1| rhomboid family protein [Streptococcus pneumoniae 2071004]
gi|421297073|ref|ZP_15747776.1| hypothetical protein SPAR160_1844 [Streptococcus pneumoniae
GA58581]
gi|147758925|gb|EDK65920.1| peptidase, S54 (rhomboid) family protein [Streptococcus pneumoniae
SP14-BS69]
gi|301802764|emb|CBW35538.1| rhomboid family membrane protein [Streptococcus pneumoniae INV200]
gi|302596973|gb|EFL64097.1| hypothetical protein CGSSpBS455_11165 [Streptococcus pneumoniae
BS455]
gi|302636680|gb|EFL67170.1| hypothetical protein CGSSp14BS292_05324 [Streptococcus pneumoniae
SP14-BS292]
gi|302639147|gb|EFL69606.1| hypothetical protein CGSSpBS293_08224 [Streptococcus pneumoniae
SP-BS293]
gi|302641464|gb|EFL71828.1| hypothetical protein CGSSpBS458_00070 [Streptococcus pneumoniae
BS458]
gi|302643691|gb|EFL73957.1| hypothetical protein CGSSpBS457_02247 [Streptococcus pneumoniae
BS457]
gi|302645866|gb|EFL76094.1| hypothetical protein CGSSpBS397_01060 [Streptococcus pneumoniae
BS397]
gi|353745479|gb|EHD26148.1| rhomboid family protein [Streptococcus pneumoniae GA47502]
gi|353807157|gb|EHD87429.1| rhomboid family protein [Streptococcus pneumoniae GA13494]
gi|353827489|gb|EHE07640.1| rhomboid family protein [Streptococcus pneumoniae GA17971]
gi|353841171|gb|EHE21228.1| rhomboid family protein [Streptococcus pneumoniae GA41688]
gi|353904275|gb|EHE79752.1| rhomboid family protein [Streptococcus pneumoniae GA13338]
gi|379528627|gb|EHY93881.1| rhomboid family protein [Streptococcus pneumoniae GA02254]
gi|379549045|gb|EHZ14156.1| rhomboid family protein [Streptococcus pneumoniae GA13224]
gi|379633907|gb|EHZ98473.1| rhomboid family protein [Streptococcus pneumoniae England14-9]
gi|395600120|gb|EJG60278.1| rhomboid family protein [Streptococcus pneumoniae 2071004]
gi|395892647|gb|EJH03637.1| hypothetical protein SPAR160_1844 [Streptococcus pneumoniae
GA58581]
Length = 225
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 62/129 (48%), Gaps = 11/129 (8%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
++ ++A F H W H N+ LY G+ VEE G+ + Y+ +G N ++ PK
Sbjct: 59 WRLLSAIFVHIGWEHFIVNMLSLYYLGRQVEEIFGSKQFFFLYLLSGMMGNLFVFVFSPK 118
Query: 196 NAVSVGASGAVFGLFAISVLVK----------MSWDWRKILEVLILGQFVVEKVMEAAQA 245
+ ++ GAS +++GLFA ++++ + + + V I+G ++ + A
Sbjct: 119 S-LAAGASTSLYGLFAAIIILRYATRNPYIQQLGQSYLTLFVVNIIGSVLIPGISLAGHI 177
Query: 246 SAGMSGTFI 254
+ G F+
Sbjct: 178 GGAVGGAFL 186
>gi|450150114|ref|ZP_21876463.1| hypothetical protein SMU92_07472 [Streptococcus mutans 14D]
gi|449233967|gb|EMC33007.1| hypothetical protein SMU92_07472 [Streptococcus mutans 14D]
Length = 223
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 130 HNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVS 189
HN ++ +T F H W H N LY G+L E G++ L Y+ +G N +
Sbjct: 51 HNPNQLWRLITPIFVHIGWEHFLFNSLVLYFVGQLAENIWGSWRFLLLYLLSGIMGNIFT 110
Query: 190 WLILPKNAVSVGASGAVFGLFAISVLV 216
L L N V+ GAS ++FGLFA V++
Sbjct: 111 -LYLTPNVVAAGASTSLFGLFAAIVVL 136
>gi|449126889|ref|ZP_21763164.1| hypothetical protein HMPREF9733_00567 [Treponema denticola SP33]
gi|448945092|gb|EMB25967.1| hypothetical protein HMPREF9733_00567 [Treponema denticola SP33]
Length = 209
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 78/165 (47%), Gaps = 19/165 (11%)
Query: 92 RKPKKSV--NGVFWIILLNLGLYVADHVFQVRSIKSLY-----LYHNFPAWYQFVTAAFC 144
RKP K N V I L+N+ +++ +F R++ + L ++QF T F
Sbjct: 5 RKPFKYTYKNAVLVIALINVAVFILTSLF--RNLSTYLGLVPILVVEAQTYWQFFTYQFV 62
Query: 145 HANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVS----V 200
H ++ HL+ N+ L+ FG VE + G L Y+ G +S+L+ V
Sbjct: 63 HGDFFHLAFNMLALFFFGVPVERKIGTKEFILYYLLIGTIDGVLSFLVYAATGFYIISLV 122
Query: 201 GASGAVFG---LFAISVLVKMSWDWRKI---LEVLILGQFVVEKV 239
GASGA+FG L+A+ + + W I +LILG V+E +
Sbjct: 123 GASGAIFGVLLLYAVIYPNSVVYLWAVIPVPAPLLILGYAVIELI 167
>gi|302421084|ref|XP_003008372.1| rhomboid family membrane protein [Verticillium albo-atrum VaMs.102]
gi|261351518|gb|EEY13946.1| rhomboid family membrane protein [Verticillium albo-atrum VaMs.102]
Length = 524
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 64/143 (44%), Gaps = 12/143 (8%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++F+T F HA H+ N+ GK +E G +L Y G N +
Sbjct: 271 WFRFITPIFLHAGLIHIGVNMLLQMTIGKEMEMAIGPVRFFLVYFSAGIFGNVMGANYAG 330
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFI 254
S GASGA+FG+ A++ L +++ W+ + FV+ V+ F+
Sbjct: 331 TGEASTGASGALFGIIALTAL-DLAYSWKDRRHPVKDLMFVLLDVVIC----------FV 379
Query: 255 GGYSVQSINHIAHLSGALFGVFL 277
G + +++ AH+ G L G+ L
Sbjct: 380 LGL-LPGLDNFAHIGGFLMGLCL 401
>gi|296140186|ref|YP_003647429.1| rhomboid family protein [Tsukamurella paurometabola DSM 20162]
gi|296028320|gb|ADG79090.1| Rhomboid family protein [Tsukamurella paurometabola DSM 20162]
Length = 240
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 59/108 (54%), Gaps = 4/108 (3%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEE--EEGNFGLWLSYIFTGAAANFVSWLI 192
W+ +T+ F H HL N++ LY+ G+ VE+ + ++G + G +A+ V W
Sbjct: 60 WWTAITSGFLHFGPIHLLVNMYSLYVLGRNVEQVMDRAHYGAIYAISLLGGSAS-VLWFG 118
Query: 193 LPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVM 240
L +N ++VGASGA+FGL +++ + V+++G V+ +M
Sbjct: 119 L-ENTITVGASGAIFGLMGAELVLLLRMKMNPTSLVVVIGANVIASMM 165
>gi|17549744|ref|NP_523084.1| hypothetical protein RS04802 [Ralstonia solanacearum GMI1000]
gi|17431999|emb|CAD18676.1| probable membrane transmembrane protein [Ralstonia solanacearum
GMI1000]
Length = 569
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ ++A F HA HL+ N+ LY G VE G L Y+ G + +S
Sbjct: 253 WWRLLSATFLHAGVLHLAVNMIGLYAAGVTVERIYGPVAYLLIYLGAGLLGSALSLSFAA 312
Query: 195 KNAVSVGASGAVFGL 209
++A+ VGASGAVFG+
Sbjct: 313 QHAIGVGASGAVFGV 327
>gi|455791418|gb|EMF43234.1| peptidase, S54 family [Leptospira interrogans serovar Lora str. TE
1992]
Length = 156
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T F HA + HL N F L I VE G + YIF+G + S + P
Sbjct: 16 WWRLLTNVFVHAGFPHLFFNGFGLIISAIFVEPILGRIRFLILYIFSGLCGSLASIVWYP 75
Query: 195 KNAVSVGASGAVFGLF-AISVLVKMS 219
N +SVGASGA+FGL+ AI LV M
Sbjct: 76 -NTISVGASGAIFGLYGAILGLVLMD 100
>gi|450034224|ref|ZP_21834244.1| hypothetical protein SMU62_01535 [Streptococcus mutans M21]
gi|449196647|gb|EMB97902.1| hypothetical protein SMU62_01535 [Streptococcus mutans M21]
Length = 223
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 130 HNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVS 189
HN ++ +T+ F H W H N LY G+L E G++ L Y+ +G N +
Sbjct: 51 HNPNQLWRLITSIFVHIGWEHFLFNSLALYFVGQLAENIWGSWRFLLLYLLSGIMGNIFT 110
Query: 190 WLILPKNAVSVGASGAVFGLFAISVLV 216
L L N V+ GAS ++FGLFA V++
Sbjct: 111 -LYLTPNVVAAGASTSLFGLFAAIVVL 136
>gi|296332829|ref|ZP_06875289.1| hypothetical protein BSU6633_17110 [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305673175|ref|YP_003864847.1| hypothetical protein BSUW23_02400 [Bacillus subtilis subsp.
spizizenii str. W23]
gi|350264714|ref|YP_004876021.1| sporulation membrane protein/ endopeptidase YdcA [Bacillus subtilis
subsp. spizizenii TU-B-10]
gi|296150109|gb|EFG90998.1| hypothetical protein BSU6633_17110 [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305411419|gb|ADM36538.1| conserved hypothetical protein [Bacillus subtilis subsp. spizizenii
str. W23]
gi|349597601|gb|AEP85389.1| sporulation membrane protein and putative endopeptidase YdcA
[Bacillus subtilis subsp. spizizenii TU-B-10]
gi|407956158|dbj|BAM49398.1| hypothetical protein BEST7613_0467 [Bacillus subtilis BEST7613]
gi|407963429|dbj|BAM56668.1| hypothetical protein BEST7003_0467 [Bacillus subtilis BEST7003]
Length = 199
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 69/143 (48%), Gaps = 13/143 (9%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T HA + HL N +++F +E G L Y +G N +++ P
Sbjct: 58 WWRLITPVLLHAGFTHLLFNSMSIFLFAPALERMLGKARFLLVYAGSGIIGNIGTYVTEP 117
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFI 254
+ V VGASGA+FGLF + + + + +RK L +GQ + ++ + MS FI
Sbjct: 118 LDYVHVGASGAIFGLFGVYLFMVL---FRKEL----IGQEHSKMILTLLAFAVLMS--FI 168
Query: 255 GGYSVQSINHIAHLSGALFGVFL 277
+IN +AHL G G L
Sbjct: 169 N----SNINMMAHLFGLCGGFLL 187
>gi|149006939|ref|ZP_01830620.1| peptidase, S54 (rhomboid) family protein [Streptococcus pneumoniae
SP18-BS74]
gi|417677805|ref|ZP_12327208.1| rhomboid family protein [Streptococcus pneumoniae GA17545]
gi|418097223|ref|ZP_12734328.1| rhomboid family protein [Streptococcus pneumoniae GA16531]
gi|418113419|ref|ZP_12750415.1| rhomboid family protein [Streptococcus pneumoniae GA41538]
gi|418156058|ref|ZP_12792779.1| rhomboid family protein [Streptococcus pneumoniae GA16242]
gi|418226452|ref|ZP_12853076.1| rhomboid family protein [Streptococcus pneumoniae NP112]
gi|419467754|ref|ZP_14007632.1| rhomboid family protein [Streptococcus pneumoniae GA05248]
gi|419513478|ref|ZP_14053108.1| rhomboid family protein [Streptococcus pneumoniae GA05578]
gi|419517682|ref|ZP_14057294.1| rhomboid family protein [Streptococcus pneumoniae GA02506]
gi|421284230|ref|ZP_15735012.1| hypothetical protein SPAR151_2048 [Streptococcus pneumoniae
GA04216]
gi|147761540|gb|EDK68505.1| peptidase, S54 (rhomboid) family protein [Streptococcus pneumoniae
SP18-BS74]
gi|332071166|gb|EGI81661.1| rhomboid family protein [Streptococcus pneumoniae GA17545]
gi|353765846|gb|EHD46387.1| rhomboid family protein [Streptococcus pneumoniae GA16531]
gi|353781630|gb|EHD62071.1| rhomboid family protein [Streptococcus pneumoniae GA41538]
gi|353818247|gb|EHD98446.1| rhomboid family protein [Streptococcus pneumoniae GA16242]
gi|353879092|gb|EHE58919.1| rhomboid family protein [Streptococcus pneumoniae NP112]
gi|379542176|gb|EHZ07334.1| rhomboid family protein [Streptococcus pneumoniae GA05248]
gi|379632765|gb|EHZ97335.1| rhomboid family protein [Streptococcus pneumoniae GA05578]
gi|379637332|gb|EIA01888.1| rhomboid family protein [Streptococcus pneumoniae GA02506]
gi|395879244|gb|EJG90304.1| hypothetical protein SPAR151_2048 [Streptococcus pneumoniae
GA04216]
Length = 225
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 62/129 (48%), Gaps = 11/129 (8%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
++ ++A F H W H N+ LY G+ VEE G+ + Y+ +G N ++ PK
Sbjct: 59 WRLLSAIFVHIGWEHFIVNMLSLYYLGRQVEEIFGSKQFFFLYLLSGMMGNLFVFVFSPK 118
Query: 196 NAVSVGASGAVFGLFAISVLVK----------MSWDWRKILEVLILGQFVVEKVMEAAQA 245
+ ++ GAS +++GLFA ++++ + + + V I+G ++ + A
Sbjct: 119 S-LAAGASTSLYGLFAAIIVLRYATRNPYIQQLGQSYLTLFVVNIIGSVLIPGISLAGHI 177
Query: 246 SAGMSGTFI 254
+ G F+
Sbjct: 178 GGAVGGAFL 186
>gi|443633959|ref|ZP_21118135.1| hypothetical protein BSI_32140 [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
gi|443346155|gb|ELS60216.1| hypothetical protein BSI_32140 [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
Length = 199
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 69/143 (48%), Gaps = 13/143 (9%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T HA + HL N +++F +E G L Y +G N +++ P
Sbjct: 58 WWRLITPVLLHAGFTHLLFNSMSIFLFAPALERMLGKARFLLVYAGSGIIGNIGTYVTEP 117
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFI 254
+ V VGASGA+FGLF + + + + +RK L +GQ + ++ + MS FI
Sbjct: 118 LDYVHVGASGAIFGLFGVYLFMVL---FRKEL----IGQEHSKMILTLLAFAVLMS--FI 168
Query: 255 GGYSVQSINHIAHLSGALFGVFL 277
+IN +AHL G G L
Sbjct: 169 N----SNINMMAHLFGLCGGFLL 187
>gi|366164287|ref|ZP_09464042.1| rhomboid family protein [Acetivibrio cellulolyticus CD2]
Length = 519
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 69/147 (46%), Gaps = 11/147 (7%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+++F+T F HA+ HL +N L++FG++VE G+ Y+ G N S++
Sbjct: 227 YWRFITPIFLHADLEHLFANSLSLFVFGRIVEGMYGHKKFTFIYLAAGVIGNVASFMF-- 284
Query: 195 KNAVSVGASGAVFGLFA--ISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMS-- 250
VGASG++FG F + + V+ +R+ IL V+ + AS G+
Sbjct: 285 STYSGVGASGSIFGFFGALLYLWVENPAAFRRYFGNNILIMIVIN--LAYGFASPGIDNF 342
Query: 251 ---GTFIGGYSVQSINHIAHLSGALFG 274
G IGG+ I + +S L G
Sbjct: 343 AHVGGLIGGFLTSGIVKLKGVSNKLLG 369
>gi|418147343|ref|ZP_12784115.1| rhomboid family protein [Streptococcus pneumoniae GA13637]
gi|421218836|ref|ZP_15675723.1| rhomboid family protein [Streptococcus pneumoniae 2070335]
gi|353810423|gb|EHD90674.1| rhomboid family protein [Streptococcus pneumoniae GA13637]
gi|395581433|gb|EJG41904.1| rhomboid family protein [Streptococcus pneumoniae 2070335]
Length = 225
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 62/129 (48%), Gaps = 11/129 (8%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
++ ++A F H W H N+ LY G+ VEE G+ + Y+ +G N ++ PK
Sbjct: 59 WRLLSAIFVHIGWEHFIVNMLSLYYLGRQVEEIFGSKQFFFLYLLSGMMGNLFVFVFSPK 118
Query: 196 NAVSVGASGAVFGLFAISVLVK----------MSWDWRKILEVLILGQFVVEKVMEAAQA 245
+ ++ GAS +++GLFA ++++ + + + V I+G ++ + A
Sbjct: 119 S-LAAGASTSLYGLFAAIIILRYATRNPYIQQLGQSYLTLFVVNIIGSVLIPGISLAGHI 177
Query: 246 SAGMSGTFI 254
+ G F+
Sbjct: 178 GGAVGGAFL 186
>gi|354557489|ref|ZP_08976747.1| Peptidase S54, rhomboid domain protein [Desulfitobacterium
metallireducens DSM 15288]
gi|353550283|gb|EHC19720.1| Peptidase S54, rhomboid domain protein [Desulfitobacterium
metallireducens DSM 15288]
Length = 325
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 4/85 (4%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
++ T+ F H + HL+ N++ L+I G EE G + Y+ +G A + S+L
Sbjct: 194 WRLFTSMFIHIGFLHLAFNIYALWILGSFSEERFGRWRFLFIYLLSGLAGSVTSFLF--T 251
Query: 196 NAVSVGASGAVFGLFAISVLVKMSW 220
+A+S GASGA+FG+ + LV SW
Sbjct: 252 DALSAGASGAIFGI--LGALVPYSW 274
>gi|224090695|ref|XP_002309063.1| predicted protein [Populus trichocarpa]
gi|222855039|gb|EEE92586.1| predicted protein [Populus trichocarpa]
Length = 367
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 72/143 (50%), Gaps = 13/143 (9%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T + H HL +N+ L + G +E+E G + L Y+ +G + +S L +
Sbjct: 107 WWRLITCNWLHGGVFHLLANMLSLLVIGIRLEQEFGFVKVGLLYVISGFGGSLLSALFIQ 166
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFI 254
N +SVGASGA+FGL S+L ++ +W + + F+ V+ A + G+
Sbjct: 167 SN-ISVGASGALFGLLG-SMLSELITNWT--IYANQVAAFITLVVIIAVNLALGI----- 217
Query: 255 GGYSVQSINHIAHLSGALFGVFL 277
+ +++ AH+ G L G L
Sbjct: 218 ----LPHVDNFAHIGGFLSGFLL 236
>gi|182418411|ref|ZP_02949705.1| rhomboid family protein [Clostridium butyricum 5521]
gi|237666444|ref|ZP_04526429.1| rhomboid family protein [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|182377793|gb|EDT75337.1| rhomboid family protein [Clostridium butyricum 5521]
gi|237657643|gb|EEP55198.1| rhomboid family protein [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 354
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 137 QFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKN 196
+ ++ AF H ++ H++ N++ LYI G +E G Y+ + ++ +S +I P +
Sbjct: 214 RLISCAFLHGSFLHIACNMYMLYIIGPQIERIYGKVKYIFIYLISCITSSTLSLIINP-D 272
Query: 197 AVSVGASGAVFGLFA 211
++SVGASG +FGL
Sbjct: 273 SISVGASGGIFGLMG 287
>gi|93005136|ref|YP_579573.1| rhomboid-like protein [Psychrobacter cryohalolentis K5]
gi|92392814|gb|ABE74089.1| Rhomboid-like protein [Psychrobacter cryohalolentis K5]
Length = 230
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 70/148 (47%), Gaps = 16/148 (10%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNF----GLWLSYIFTGAAANFVSW 190
W +FVT F HA+ HL N+F LY FG+ +E F G L Y+ A S+
Sbjct: 69 WDRFVTHGFIHADSMHLLFNMFTLYFFGRAIEGLYQKFLFGYGFLLFYVLAIIVAMIPSY 128
Query: 191 LILPKNA--VSVGASGAVFG-LFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASA 247
+ ++A +S+GASG V LFA +L W KI I+ + + A +
Sbjct: 129 IKHKQSASYLSLGASGGVSAVLFAFILLAP----WEKIYLFAIIP--IPAILFAVAYVAY 182
Query: 248 GMSGTFIGGYSVQSINHIAHLSGALFGV 275
+ GG +INH+AH+ G FGV
Sbjct: 183 SIYSDKRGG---SNINHMAHMWGGAFGV 207
>gi|420143494|ref|ZP_14650991.1| Hypothetical protein Y7C_88798 [Lactococcus garvieae IPLA 31405]
gi|391856365|gb|EIT66905.1| Hypothetical protein Y7C_88798 [Lactococcus garvieae IPLA 31405]
Length = 230
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
++ VT F H W H N L+ G+ VE G+ L YI +G N +++ P
Sbjct: 63 WRLVTPIFIHIGWTHFLMNTLTLFFIGRQVEAVFGSLNFSLIYILSGIFGNAATFIFSP- 121
Query: 196 NAVSVGASGAVFGLFA 211
N++S GAS ++FGLFA
Sbjct: 122 NSLSAGASTSIFGLFA 137
>gi|320533147|ref|ZP_08033872.1| peptidase, S54 family protein [Actinomyces sp. oral taxon 171 str.
F0337]
gi|320134642|gb|EFW26865.1| peptidase, S54 family protein [Actinomyces sp. oral taxon 171 str.
F0337]
Length = 215
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTG-AAANFVSWLILP 194
++F+T AF HA++ H+ N+ L++ G+ +E G + Y+ + + + WL P
Sbjct: 49 WRFLTTAFLHADYMHIGFNMLTLWVLGRTLEPLLGRWRFTSIYLLSALGGSTMIYWLSWP 108
Query: 195 KN----AVSVGASGAVFGLFAISVLVK 217
++VGASGAVFGLF+ +V+
Sbjct: 109 GTESWLTLTVGASGAVFGLFSAMFIVQ 135
>gi|424897232|ref|ZP_18320806.1| putative membrane protein [Rhizobium leguminosarum bv. trifolii
WSM2297]
gi|393181459|gb|EJC81498.1| putative membrane protein [Rhizobium leguminosarum bv. trifolii
WSM2297]
Length = 265
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 133 PAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLI 192
P ++T AF H+ + HL+ N+ FL++FG VE+ G+ + Y+ AA L+
Sbjct: 70 PEPLTYLTYAFVHSGFWHLAGNMIFLWVFGDNVEDAMGHLRFLIFYLLCAAAGALCHGLL 129
Query: 193 -LPKNAVSVGASGAVFGLFAISVLV 216
+ A VGASGA+ G+ A VL+
Sbjct: 130 TMTSQAPLVGASGAISGVVAAYVLL 154
>gi|300693980|ref|YP_003749953.1| peptidase s54, rhomboid family [Ralstonia solanacearum PSI07]
gi|299076017|emb|CBJ35328.1| putative peptidase S54, rhomboid family [Ralstonia solanacearum
PSI07]
gi|344169739|emb|CCA82101.1| putative peptidase S54, rhomboid family [blood disease bacterium
R229]
Length = 197
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 72/145 (49%), Gaps = 22/145 (15%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANF-----VSW 190
+Q VT AF HA+ HL N+F +++FG+ VE G + Y+ + +A F V +
Sbjct: 46 WQLVTYAFLHASVPHLVFNMFGMFMFGRDVERALGRVRTGVLYLASVLSAAFTQIAVVGF 105
Query: 191 LILPKNAVSVGASGAVFG-LFAISVLVKMSWDWRKILEVLI----LGQFVVEKVMEAAQA 245
P + VGASG VFG L A +VL R+++ +LI + ++ V +
Sbjct: 106 FTFPAGPI-VGASGGVFGLLLAYAVLFP-----RRMILLLIPPIPMPAWLFATVYALVEL 159
Query: 246 SAGMSGTFIGGYSVQSINHIAHLSG 270
+ G+SG+ G + H AHL G
Sbjct: 160 TLGVSGSHSG------VAHFAHLGG 178
>gi|254452819|ref|ZP_05066256.1| peptidase, S54 (rhomboid) family [Octadecabacter arcticus 238]
gi|198267225|gb|EDY91495.1| peptidase, S54 (rhomboid) family [Octadecabacter arcticus 238]
Length = 246
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 140 TAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVS 199
T F HA + HL+ N+ FL+IFG +EEE G+ YI +G AA ++ +L +AV
Sbjct: 66 THMFLHAGFMHLAGNMLFLWIFGDNMEEEIGHLPFLGFYILSGFAAAYLQYLPNVLSAVP 125
Query: 200 -VGASGAVFGLFAISVLV 216
VGASGA+ G+ +L+
Sbjct: 126 MVGASGAIAGVMGGYLLL 143
>gi|451820893|ref|YP_007457094.1| rhomboid protease GluP [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
gi|451786872|gb|AGF57840.1| rhomboid protease GluP [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
Length = 512
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 65/148 (43%), Gaps = 31/148 (20%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+++F+T F HAN H++ N + LY+ GKL E G Y G N S+
Sbjct: 230 YWRFITPMFLHANIMHVALNCYTLYLIGKLSERIFGKAKFITIYFIAGILGNIFSFAF-- 287
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFI 254
+ VGASGA+FGLF +VL K +EK A +G+ +
Sbjct: 288 NSNPGVGASGAIFGLFG-AVLFK-----------------CIEK---PALFKSGLGPNIL 326
Query: 255 G--------GYSVQSINHIAHLSGALFG 274
G G+S I++ AHL G + G
Sbjct: 327 GAILINLFYGFSKSGIDNFAHLGGLIGG 354
>gi|350401821|ref|XP_003486271.1| PREDICTED: presenilins-associated rhomboid-like protein,
mitochondrial-like [Bombus impatiens]
Length = 343
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 68/142 (47%), Gaps = 11/142 (7%)
Query: 138 FVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWL---ILP 194
FVT F H + HL N++ LY F K+ + G Y+ +G ++F S+L ++
Sbjct: 180 FVT--FSHCSLLHLIVNMYVLYGFSKIAVAQLGREQFLALYLISGVVSSFSSYLYKAVVG 237
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFI 254
S+GASGA+ G+F V + L ++ L F M A +A G+ T
Sbjct: 238 IRDPSLGASGAIMGVFGF-VCTQFP---NAYLSIIFLPMFTFTASM-AMKAIMGLD-TLG 291
Query: 255 GGYSVQSINHIAHLSGALFGVF 276
Q +H AHL GALFG+F
Sbjct: 292 CLMRWQRFDHAAHLGGALFGIF 313
>gi|310792586|gb|EFQ28113.1| rhomboid family protein [Glomerella graminicola M1.001]
Length = 561
Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++F+T F HA H+ NL GK +E G+ +L Y+ G N +
Sbjct: 323 WFRFITPIFLHAGLIHIGFNLLLQMTIGKEMEVAIGSIRFFLVYLSAGIFGNVMGANYAG 382
Query: 195 KNAVSVGASGAVFGLFAISVLVKM-SWDWRK 224
A S GASGA+FG+ A+++L + SW R+
Sbjct: 383 VMAASTGASGALFGVIALTLLDLLYSWKDRR 413
>gi|58584206|ref|YP_203222.1| hypothetical protein XOO4583 [Xanthomonas oryzae pv. oryzae KACC
10331]
gi|58428800|gb|AAW77837.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae KACC
10331]
Length = 243
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 137 QFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVS-WLILPK 195
+ TA F HA+W+HL NL FL IFG E G + L L ++ GAA+N + + I
Sbjct: 83 RLFTALFLHADWSHLLGNLMFLLIFGLPAERILGPWRLLLLFLVGGAASNLAAIFAIGTP 142
Query: 196 NAVSVGASGAV 206
+ V +GASGAV
Sbjct: 143 DRVIIGASGAV 153
>gi|347520690|ref|YP_004778261.1| hypothetical protein LCGT_0084 [Lactococcus garvieae ATCC 49156]
gi|385832053|ref|YP_005869828.1| hypothetical protein [Lactococcus garvieae Lg2]
gi|343179258|dbj|BAK57597.1| conserved hypothetical protein [Lactococcus garvieae ATCC 49156]
gi|343181206|dbj|BAK59544.1| conserved hypothetical protein [Lactococcus garvieae Lg2]
Length = 230
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
++ VT F H W H N L+ G+ VE G+ L YI +G N +++ P
Sbjct: 63 WRLVTPIFIHIGWTHFLMNTLTLFFIGRQVEAVFGSLNFSLIYILSGIFGNAATFIFSP- 121
Query: 196 NAVSVGASGAVFGLFA 211
N++S GAS ++FGLFA
Sbjct: 122 NSLSAGASTSIFGLFA 137
>gi|251783373|ref|YP_002997678.1| integral membrane protein [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|408402457|ref|YP_006860421.1| integral membrane protein (rhomboid family) [Streptococcus
dysgalactiae subsp. equisimilis RE378]
gi|410495766|ref|YP_006905612.1| Rhomboid family member 1 [Streptococcus dysgalactiae subsp.
equisimilis AC-2713]
gi|417751215|ref|ZP_12399541.1| peptidase, S54 family [Streptococcus dysgalactiae subsp.
equisimilis SK1249]
gi|242392005|dbj|BAH82464.1| integral membrane protein (rhomboid family) [Streptococcus
dysgalactiae subsp. equisimilis GGS_124]
gi|333773024|gb|EGL49811.1| peptidase, S54 family [Streptococcus dysgalactiae subsp.
equisimilis SK1249]
gi|407968686|dbj|BAM61924.1| integral membrane protein (rhomboid family) [Streptococcus
dysgalactiae subsp. equisimilis RE378]
gi|410440926|emb|CCI63554.1| Rhomboid family member 1 [Streptococcus dysgalactiae subsp.
equisimilis AC-2713]
Length = 224
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAAN-FVSWLILP 194
++ VT F H W H N LY G++ EE G+ L Y+F+G N F W L
Sbjct: 58 WRLVTPIFVHIGWGHFFVNALTLYFVGQMAEEIWGSHRFLLLYVFSGVMGNAFTMW--LT 115
Query: 195 KNAVSVGASGAVFGLFA 211
V+ GAS ++FGLFA
Sbjct: 116 PETVAAGASTSLFGLFA 132
>gi|116331862|ref|YP_801580.1| intramembrane protease [Leptospira borgpetersenii serovar
Hardjo-bovis str. JB197]
gi|116125551|gb|ABJ76822.1| Intramembrane protease [Leptospira borgpetersenii serovar
Hardjo-bovis str. JB197]
Length = 197
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 68/144 (47%), Gaps = 10/144 (6%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+Y +T+ F HA+W HL N+ Y FGK +E G L Y+ T + +SW
Sbjct: 40 YYTLITSGFIHADWMHLIFNMISFYSFGKNLETTVGPVKFLLFYLGTILITSVISWRKNL 99
Query: 195 KNAV--SVGASGAVFGLFAISVLVKMSWD-WRKILEVLILGQFVVEKVMEAAQASAGMSG 251
+N + ++GASG V G+ ++L + + + + I G + A S+
Sbjct: 100 ENPLYATLGASGGVCGVLFATILFYPNLSLYMMFIPIPIPGAIYAVLYLVYAYFSSK--- 156
Query: 252 TFIGGYSVQSINHIAHLSGALFGV 275
G+S INH AHL GAL G+
Sbjct: 157 ---SGHS-DGINHDAHLWGALCGI 176
>gi|417687552|ref|ZP_12336819.1| rhomboid family protein [Streptococcus pneumoniae GA41301]
gi|418160833|ref|ZP_12797529.1| rhomboid family protein [Streptococcus pneumoniae GA17227]
gi|419522046|ref|ZP_14061637.1| rhomboid family protein [Streptococcus pneumoniae GA05245]
gi|332071362|gb|EGI81856.1| rhomboid family protein [Streptococcus pneumoniae GA41301]
gi|353820098|gb|EHE00286.1| rhomboid family protein [Streptococcus pneumoniae GA17227]
gi|379536033|gb|EHZ01224.1| rhomboid family protein [Streptococcus pneumoniae GA05245]
Length = 225
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 62/129 (48%), Gaps = 11/129 (8%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
++ ++A F H W H N+ LY G+ VEE G+ + Y+ +G N ++ PK
Sbjct: 59 WRLLSAIFVHIGWEHFIVNMLSLYYLGRQVEEIFGSKQFFFLYLLSGMMGNLFVFVFSPK 118
Query: 196 NAVSVGASGAVFGLFAISVLVK----------MSWDWRKILEVLILGQFVVEKVMEAAQA 245
+ ++ GAS +++GLFA ++++ + + + V I+G ++ + A
Sbjct: 119 S-LAAGASTSLYGLFAAIIVLRYATRNPYIQQLGQSYLTLFVVNIIGSVLIPGISLAGHI 177
Query: 246 SAGMSGTFI 254
+ G F+
Sbjct: 178 GGAVGGAFL 186
>gi|238854484|ref|ZP_04644823.1| rhomboid protease GluP [Lactobacillus jensenii 269-3]
gi|313471846|ref|ZP_07812338.1| rhomboid family protein [Lactobacillus jensenii 1153]
gi|238832911|gb|EEQ25209.1| rhomboid protease GluP [Lactobacillus jensenii 269-3]
gi|313449012|gb|EEQ68240.2| rhomboid family protein [Lactobacillus jensenii 1153]
Length = 229
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ TA F H HL N L+ G+ +E G+ + Y+ G N ++ +
Sbjct: 59 WWRLFTAQFLHIGLLHLVVNCVTLFYMGQYLEPMLGHVRFLIIYLLAGVGGNLMTLALGS 118
Query: 195 KNAVSVGASGAVFGLFA 211
NAVS GAS A+FGLF
Sbjct: 119 DNAVSAGASTALFGLFG 135
>gi|218437706|ref|YP_002376035.1| rhomboid family protein [Cyanothece sp. PCC 7424]
gi|218170434|gb|ACK69167.1| Rhomboid family protein [Cyanothece sp. PCC 7424]
Length = 515
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAA----NFVSW 190
W++ +TA F H W HLS N+ LY G VE G ++Y+ +G + +S
Sbjct: 371 WWRLITANFLHYGWLHLSMNMMGLYFLGHFVELTLGRLRYLIAYLVSGIGSMSLYTLLSL 430
Query: 191 LILPKNAVSVGASGAVFGLFAISVLVKMSWDWRK 224
+ + VGAS A+ GL + V + DW K
Sbjct: 431 KLEDSGQILVGASAAIMGLVGVLCAVFLR-DWLK 463
>gi|15903945|ref|NP_359495.1| hypothetical protein spr1904 [Streptococcus pneumoniae R6]
gi|15459598|gb|AAL00706.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
Length = 226
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 62/129 (48%), Gaps = 11/129 (8%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
++ ++A F H W H N+ LY G+ VEE G+ + Y+ +G N ++ PK
Sbjct: 60 WRLLSAIFVHIGWEHFIVNMLSLYYLGRQVEEIFGSKQFFFLYLLSGMMGNLFVFVFSPK 119
Query: 196 NAVSVGASGAVFGLFAISVLVK----------MSWDWRKILEVLILGQFVVEKVMEAAQA 245
+ ++ GAS +++GLFA ++++ + + + V I+G ++ + A
Sbjct: 120 S-LAAGASTSLYGLFAAIIVLRYATRNPYIQQLGQSYLTLFVVNIIGSVLIPGISLAGHI 178
Query: 246 SAGMSGTFI 254
+ G F+
Sbjct: 179 GGAVGGAFL 187
>gi|167517132|ref|XP_001742907.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163779531|gb|EDQ93145.1| predicted protein [Monosiga brevicollis MX1]
Length = 323
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 57/106 (53%), Gaps = 3/106 (2%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
++ +TA F HA HL L+ G +E + G + L Y+ +G N VS L +P
Sbjct: 122 WRILTALFMHAGAIHLLVMLYVQLSVGVPLERKAGWLRIALIYLISGCGGNLVSALFVP- 180
Query: 196 NAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLI-LGQFVVEKVM 240
N+ VGASGAV+GL A + LV + WR + + LG ++++ +
Sbjct: 181 NSAQVGASGAVYGLVA-TALVDLMHCWRLLKSPWVQLGTYLIQTAV 225
>gi|444422452|ref|ZP_21218107.1| peptidase, S54 family [Streptococcus pneumoniae PNI0446]
gi|444288198|gb|ELU93097.1| peptidase, S54 family [Streptococcus pneumoniae PNI0446]
Length = 180
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 62/129 (48%), Gaps = 11/129 (8%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
++ ++A F H W H N+ LY G+ VEE G+ + Y+ +G N ++ PK
Sbjct: 14 WRLLSAIFVHIGWEHFIVNMLSLYYLGRQVEEIFGSKQFFFLYLLSGMMGNLFVFVFSPK 73
Query: 196 NAVSVGASGAVFGLFAISVLVK----------MSWDWRKILEVLILGQFVVEKVMEAAQA 245
+ ++ GAS +++GLFA ++++ + + + V I+G ++ + A
Sbjct: 74 S-LAAGASTSLYGLFAAIIVLRYATRNPYIQQLGQSYLTLFVVNIIGSVLIPGISLAGHI 132
Query: 246 SAGMSGTFI 254
+ G F+
Sbjct: 133 GGAVGGAFL 141
>gi|398349000|ref|ZP_10533703.1| intramembrane serine protease [Leptospira broomii str. 5399]
Length = 220
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 6/87 (6%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAA-----NFVSW 190
++++ AF HA++ HL N+ FL+ G++VE + G WL + F GA + V
Sbjct: 48 WKWIGMAFFHADFTHLFWNMLFLFFLGRIVEYKVGK-AKWLLFFFMGAFVSGFLDSLVRG 106
Query: 191 LILPKNAVSVGASGAVFGLFAISVLVK 217
L L ++ ++GASGAV GL A++ L+
Sbjct: 107 LFLSDSSPAIGASGAVSGLAAVAALLS 133
>gi|374598050|ref|ZP_09671052.1| Rhomboid family protein [Myroides odoratus DSM 2801]
gi|423323612|ref|ZP_17301454.1| hypothetical protein HMPREF9716_00811 [Myroides odoratimimus CIP
103059]
gi|373909520|gb|EHQ41369.1| Rhomboid family protein [Myroides odoratus DSM 2801]
gi|404609377|gb|EKB08760.1| hypothetical protein HMPREF9716_00811 [Myroides odoratimimus CIP
103059]
Length = 215
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
Y+ +TA F H +W H + N+F LY+F +V G+F L Y+ + N +++ + K
Sbjct: 44 YRMITAGFLHVDWMHFAFNMFTLYMFSGIVVAISGSFYFVLIYLLSIIIGNILTYQLYFK 103
Query: 196 NA--VSVGASGAVFGLFAISVLV 216
+VGASG V G+ S+L+
Sbjct: 104 QRQYYAVGASGGVTGVVYASILL 126
>gi|190893627|ref|YP_001980169.1| peptidase [Rhizobium etli CIAT 652]
gi|190698906|gb|ACE92991.1| putative peptidase protein [Rhizobium etli CIAT 652]
Length = 262
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 133 PAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLI 192
P ++T AF H+ + HL+SN+ FL++FG VE+ G+ L Y+ AA L+
Sbjct: 70 PESMTYLTYAFVHSGFWHLASNMVFLWVFGDNVEDAMGHMRFLLFYLLCAAAGALCHGLL 129
Query: 193 LPK-NAVSVGASGAVFGLFAISVLV 216
A VGASGA+ G+ A V++
Sbjct: 130 TTSPEAPLVGASGAISGVVAAYVML 154
>gi|323490567|ref|ZP_08095773.1| hypothetical protein GPDM_14436 [Planococcus donghaensis MPA1U2]
gi|323395833|gb|EGA88673.1| hypothetical protein GPDM_14436 [Planococcus donghaensis MPA1U2]
Length = 202
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++F T F H HL N+F L++FG +E G Y+ G A+ ++ + P
Sbjct: 57 WWRFFTPMFLHNGVMHLLFNMFSLFLFGPELERLTGKVRFTTIYLLAGFFASAATYFLQP 116
Query: 195 KNAVSVGASGAVFGLFA 211
+ VGASGA+FG+F
Sbjct: 117 LDYFHVGASGAIFGVFG 133
>gi|387927974|ref|ZP_10130652.1| hypothetical protein PB1_05942 [Bacillus methanolicus PB1]
gi|387587560|gb|EIJ79882.1| hypothetical protein PB1_05942 [Bacillus methanolicus PB1]
Length = 201
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+++ VT H+ + H+ N F L +FG +E G + Y TG AAN ++ + P
Sbjct: 58 YWRLVTPILLHSGFPHMLFNSFSLILFGPALERIIGKNKFVILYFSTGIAANIATFFVKP 117
Query: 195 KNAVSVGASGAVFGLFA 211
+ VG+SGA+FGLF
Sbjct: 118 LTFIHVGSSGAIFGLFG 134
>gi|15901909|ref|NP_346513.1| hypothetical protein SP_2094 [Streptococcus pneumoniae TIGR4]
gi|111657590|ref|ZP_01408327.1| hypothetical protein SpneT_02001225 [Streptococcus pneumoniae
TIGR4]
gi|225857667|ref|YP_002739178.1| peptidase, S54 [Streptococcus pneumoniae P1031]
gi|410477434|ref|YP_006744193.1| rhomboid family protein [Streptococcus pneumoniae gamPNI0373]
gi|418131252|ref|ZP_12768132.1| rhomboid family protein [Streptococcus pneumoniae GA07643]
gi|418188083|ref|ZP_12824601.1| rhomboid family protein [Streptococcus pneumoniae GA47360]
gi|418230918|ref|ZP_12857513.1| rhomboid family protein [Streptococcus pneumoniae EU-NP01]
gi|419478742|ref|ZP_14018561.1| rhomboid family protein [Streptococcus pneumoniae GA18068]
gi|421243862|ref|ZP_15700372.1| rhomboid family protein [Streptococcus pneumoniae 2081074]
gi|421248265|ref|ZP_15704739.1| rhomboid family protein [Streptococcus pneumoniae 2082170]
gi|421271519|ref|ZP_15722369.1| rhomboid family protein [Streptococcus pneumoniae SPAR48]
gi|444395986|ref|ZP_21193523.1| peptidase, S54 family [Streptococcus pneumoniae PNI0002]
gi|444398380|ref|ZP_21195862.1| peptidase, S54 family [Streptococcus pneumoniae PNI0006]
gi|444400248|ref|ZP_21197660.1| peptidase, S54 family [Streptococcus pneumoniae PNI0007]
gi|444402476|ref|ZP_21199640.1| peptidase, S54 family [Streptococcus pneumoniae PNI0008]
gi|444404441|ref|ZP_21201395.1| peptidase, S54 family [Streptococcus pneumoniae PNI0009]
gi|444407996|ref|ZP_21204663.1| peptidase, S54 family [Streptococcus pneumoniae PNI0010]
gi|444410809|ref|ZP_21207324.1| peptidase, S54 family [Streptococcus pneumoniae PNI0076]
gi|444412394|ref|ZP_21208715.1| peptidase, S54 family [Streptococcus pneumoniae PNI0153]
gi|444415441|ref|ZP_21211679.1| peptidase, S54 family [Streptococcus pneumoniae PNI0199]
gi|444418544|ref|ZP_21214519.1| peptidase, S54 family [Streptococcus pneumoniae PNI0360]
gi|444421415|ref|ZP_21217143.1| peptidase, S54 family [Streptococcus pneumoniae PNI0427]
gi|14973604|gb|AAK76153.1| conserved hypothetical protein [Streptococcus pneumoniae TIGR4]
gi|225725605|gb|ACO21457.1| peptidase, S54 [Streptococcus pneumoniae P1031]
gi|353800667|gb|EHD80976.1| rhomboid family protein [Streptococcus pneumoniae GA07643]
gi|353847892|gb|EHE27911.1| rhomboid family protein [Streptococcus pneumoniae GA47360]
gi|353884429|gb|EHE64228.1| rhomboid family protein [Streptococcus pneumoniae EU-NP01]
gi|379563014|gb|EHZ28019.1| rhomboid family protein [Streptococcus pneumoniae GA18068]
gi|395605788|gb|EJG65902.1| rhomboid family protein [Streptococcus pneumoniae 2081074]
gi|395612126|gb|EJG72171.1| rhomboid family protein [Streptococcus pneumoniae 2082170]
gi|395865658|gb|EJG76796.1| rhomboid family protein [Streptococcus pneumoniae SPAR48]
gi|406370379|gb|AFS44069.1| rhomboid family protein [Streptococcus pneumoniae gamPNI0373]
gi|444255658|gb|ELU62004.1| peptidase, S54 family [Streptococcus pneumoniae PNI0002]
gi|444259109|gb|ELU65425.1| peptidase, S54 family [Streptococcus pneumoniae PNI0006]
gi|444266434|gb|ELU72387.1| peptidase, S54 family [Streptococcus pneumoniae PNI0008]
gi|444266896|gb|ELU72825.1| peptidase, S54 family [Streptococcus pneumoniae PNI0007]
gi|444271592|gb|ELU77343.1| peptidase, S54 family [Streptococcus pneumoniae PNI0010]
gi|444274356|gb|ELU80003.1| peptidase, S54 family [Streptococcus pneumoniae PNI0153]
gi|444276521|gb|ELU82073.1| peptidase, S54 family [Streptococcus pneumoniae PNI0076]
gi|444276821|gb|ELU82357.1| peptidase, S54 family [Streptococcus pneumoniae PNI0009]
gi|444279912|gb|ELU85293.1| peptidase, S54 family [Streptococcus pneumoniae PNI0199]
gi|444281275|gb|ELU86602.1| peptidase, S54 family [Streptococcus pneumoniae PNI0360]
gi|444282502|gb|ELU87759.1| peptidase, S54 family [Streptococcus pneumoniae PNI0427]
Length = 225
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 62/129 (48%), Gaps = 11/129 (8%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
++ ++A F H W H N+ LY G+ VEE G+ + Y+ +G N ++ PK
Sbjct: 59 WRLLSAIFVHIGWEHFIVNMLSLYYLGRQVEEIFGSKQFFFLYLLSGMMGNLFVFVFSPK 118
Query: 196 NAVSVGASGAVFGLFAISVLVK----------MSWDWRKILEVLILGQFVVEKVMEAAQA 245
+ ++ GAS +++GLFA ++++ + + + V I+G ++ + A
Sbjct: 119 S-LAAGASTSLYGLFAAIIVLRYATRNPYIQQLGQSYLTLFVVNIIGSVLIPGISLAGHI 177
Query: 246 SAGMSGTFI 254
+ G F+
Sbjct: 178 GGAVGGAFL 186
>gi|421214065|ref|ZP_15671016.1| rhomboid family protein [Streptococcus pneumoniae 2070108]
gi|395578251|gb|EJG38775.1| rhomboid family protein [Streptococcus pneumoniae 2070108]
Length = 225
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 62/129 (48%), Gaps = 11/129 (8%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
++ ++A F H W H N+ LY G+ VEE G+ + Y+ +G N ++ PK
Sbjct: 59 WRLLSAIFVHIGWEHFIVNMLSLYYLGRQVEEIFGSKQFFFLYLLSGMMGNLFVFVFSPK 118
Query: 196 NAVSVGASGAVFGLFAISVLVK----------MSWDWRKILEVLILGQFVVEKVMEAAQA 245
+ ++ GAS +++GLFA ++++ + + + V I+G ++ + A
Sbjct: 119 S-LAAGASTSLYGLFAAIIVLRYATRNPYIQQLGQSYLTLFVVNIIGSVLIPGISLAGHI 177
Query: 246 SAGMSGTFI 254
+ G F+
Sbjct: 178 GGAVGGAFL 186
>gi|374704263|ref|ZP_09711133.1| rhomboid family protein [Pseudomonas sp. S9]
Length = 470
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%)
Query: 141 AAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSV 200
A F H +++HL+ N+ FL+IFG +E G + Y+ G A++ + W++ P V
Sbjct: 130 AMFLHGSFSHLAGNMLFLFIFGFALEIALGRWLYLGLYLTCGVASHLLWWIMDPAWVTGV 189
Query: 201 GASGAVFGLFAISVLV 216
GASGA+ GL + + +
Sbjct: 190 GASGAISGLMGMYLAI 205
>gi|326488163|dbj|BAJ89920.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326499095|dbj|BAK06038.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 342
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 55/93 (59%), Gaps = 3/93 (3%)
Query: 130 HNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVS 189
H AW + T+ + HA HL +N+ L G +E++ G + + L Y+F+G + +S
Sbjct: 130 HGNEAW-RLETSTWLHAGLIHLGANMISLIFVGVRLEQQFGFWKVGLVYLFSGLGGSVLS 188
Query: 190 WLILPKNAVSVGASGAVFGLFAISVLVKMSWDW 222
L + +N VSVGASGA+FGL ++L ++ +W
Sbjct: 189 VLFI-RNGVSVGASGALFGLLG-AMLSELITNW 219
>gi|218517088|ref|ZP_03513928.1| putative peptidase protein [Rhizobium etli 8C-3]
Length = 262
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 133 PAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLI 192
P ++T AF H+ + HL+SN+ FL++FG VE+ G+ L Y+ AA L+
Sbjct: 70 PESMTYLTYAFVHSGFWHLASNMVFLWVFGDNVEDAMGHMRFLLFYLLCAAAGALCHGLL 129
Query: 193 LPK-NAVSVGASGAVFGLFAISVLV 216
A VGASGA+ G+ A V++
Sbjct: 130 TTSPEAPLVGASGAISGVVAAYVML 154
>gi|375138853|ref|YP_004999502.1| hypothetical protein [Mycobacterium rhodesiae NBB3]
gi|359819474|gb|AEV72287.1| putative membrane protein [Mycobacterium rhodesiae NBB3]
Length = 282
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ +++AF H H+ N++ LY+ G +E G Y+ + + + +L+
Sbjct: 108 WYRLISSAFLHYGPTHILFNMWALYVVGPPLEAALGRLRFASLYLVSALGGSVLVYLLSA 167
Query: 195 KNAVSVGASGAVFGLFAISVLV--KMSWDWRKILEVLIL 231
A + GASGA+FGLF + +V +++ D R ++ ++ L
Sbjct: 168 LGAQTAGASGAIFGLFGATFVVGKRLNLDVRWVVGLIAL 206
>gi|256843575|ref|ZP_05549063.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN]
gi|256850051|ref|ZP_05555481.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US]
gi|262047339|ref|ZP_06020296.1| membrane-associated serine protease [Lactobacillus crispatus
MV-3A-US]
gi|293381863|ref|ZP_06627832.1| peptidase, S54 (rhomboid) family protein [Lactobacillus crispatus
214-1]
gi|423319243|ref|ZP_17297119.1| hypothetical protein HMPREF9250_00309 [Lactobacillus crispatus
FB049-03]
gi|423320787|ref|ZP_17298659.1| hypothetical protein HMPREF9249_00659 [Lactobacillus crispatus
FB077-07]
gi|256614995|gb|EEU20196.1| conserved hypothetical protein [Lactobacillus crispatus 125-2-CHN]
gi|256713023|gb|EEU28014.1| conserved hypothetical protein [Lactobacillus crispatus MV-1A-US]
gi|260572313|gb|EEX28876.1| membrane-associated serine protease [Lactobacillus crispatus
MV-3A-US]
gi|290921584|gb|EFD98617.1| peptidase, S54 (rhomboid) family protein [Lactobacillus crispatus
214-1]
gi|405589376|gb|EKB62943.1| hypothetical protein HMPREF9250_00309 [Lactobacillus crispatus
FB049-03]
gi|405599039|gb|EKB72221.1| hypothetical protein HMPREF9249_00659 [Lactobacillus crispatus
FB077-07]
Length = 228
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ TA F H HL SN +Y G+ +E G+ ++Y+ G N +S
Sbjct: 58 WWRLFTAQFLHIGIMHLVSNAIIIYYMGQYMEPLMGHVRFLVTYLLAGVGGNLMSLAFSA 117
Query: 195 KNAVSVGASGAVFGLFA 211
+S GAS A+FGLF
Sbjct: 118 DRGLSAGASTALFGLFG 134
>gi|256810190|ref|YP_003127559.1| rhomboid family protein [Methanocaldococcus fervens AG86]
gi|256793390|gb|ACV24059.1| Rhomboid family protein [Methanocaldococcus fervens AG86]
Length = 190
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 73/162 (45%), Gaps = 19/162 (11%)
Query: 128 LYHNFPAW--------YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYI 179
LY+ F W +Q V + F H + HL N+F L+IFG +E G+ L ++
Sbjct: 23 LYYYFALWPTLFINMPWQIVMSIFMHGSITHLLVNMFVLFIFGTYLERIVGSKNYLLIFL 82
Query: 180 FTGAAANFVSWL---ILPKNAVSVGASGAVFGLF-AISVLVKMSWDWRKILEVLILGQFV 235
+G N L + A SVGASGA+FG+ A+++L L V++ V
Sbjct: 83 TSGIVGNLAYILYAYLTGDYAPSVGASGAIFGVMGALAILAPH-------LRVVVFPLPV 135
Query: 236 VEKVMEAAQASAGMSGTFIGGYSVQSINHIAHLSGALFGVFL 277
+ A A + + S I HI HL+G + G+ L
Sbjct: 136 PISIKLAVIIFALIDLILLPYTSKTGIAHITHLAGLITGLIL 177
>gi|110289434|gb|ABB47903.2| Rhomboid family protein, expressed [Oryza sativa Japonica Group]
Length = 250
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 130 HNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVS 189
H W + VT + HA HL +N+ L + G +E++ G + + Y+ +G + +S
Sbjct: 11 HEHQGW-RLVTCIWLHAGVVHLLANMLSLVLIGLRLEQQFGYMRIGIIYLVSGIGGSVLS 69
Query: 190 WLILPKNAVSVGASGAVFGLFA 211
L + +N++SVGASGA+FGL
Sbjct: 70 SLFI-RNSISVGASGALFGLLG 90
>gi|456822729|gb|EMF71199.1| peptidase, S54 family [Leptospira interrogans serovar Canicola str.
LT1962]
Length = 272
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 88/189 (46%), Gaps = 30/189 (15%)
Query: 98 VNGVFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHA--NWNHLSSNL 155
+NG + + L L V D++ + S + H F W QF+T AF H+ N+ H+ N+
Sbjct: 22 LNGSIFAVQLLLSWTVGDYLTLYFGMTSDMITHRFFIW-QFLTYAFLHSVQNFFHILFNM 80
Query: 156 FFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP---KNAVSVGASGAVFGLFAI 212
F L++FG ++E G+ Y+F+ F W++ +GASG ++GL
Sbjct: 81 FSLWMFGSVLESYWGSRNFLKFYLFSCFMGVFFPWILHNVGFHQGTIIGASGGIYGL--- 137
Query: 213 SVLVKMSWDWRKILEVLILGQF-------VVEKVMEAAQASAGMSGTFIGGYSVQSINHI 265
L+ + W E+L +G F VV ++ A + +G +I H+
Sbjct: 138 --LIAFALIWPN-QELLFMGFFPLKAKYMVVILMLIIAFSGSG-----------SNIAHM 183
Query: 266 AHLSGALFG 274
AHL GA+ G
Sbjct: 184 AHLGGAIGG 192
>gi|222629393|gb|EEE61525.1| hypothetical protein OsJ_15827 [Oryza sativa Japonica Group]
Length = 301
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 130 HNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVS 189
H AW + T+ + HA HL++N+ L I G +E++ G + + L Y+ +G + +S
Sbjct: 90 HGNQAW-RLETSTWLHAGLIHLAANMISLLIIGIRLEQQFGFWKVGLVYLVSGFGGSVLS 148
Query: 190 WLILPKNAVSVGASGAVFGLFA 211
L + +N ++VGASGA+FGL
Sbjct: 149 VLFISRNGITVGASGALFGLLG 170
>gi|154505636|ref|ZP_02042374.1| hypothetical protein RUMGNA_03175 [Ruminococcus gnavus ATCC 29149]
gi|336431736|ref|ZP_08611578.1| hypothetical protein HMPREF0991_00697 [Lachnospiraceae bacterium
2_1_58FAA]
gi|153794075|gb|EDN76495.1| putative rhomboid protease GluP [Ruminococcus gnavus ATCC 29149]
gi|336019755|gb|EGN49477.1| hypothetical protein HMPREF0991_00697 [Lachnospiraceae bacterium
2_1_58FAA]
Length = 200
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLI-- 192
+Y+ +T F H +HL +N+ L G +E+E G+F L Y +G AN +S +
Sbjct: 53 YYRLITCIFLHFGIDHLMNNMVMLGALGWNLEKEIGSFKFLLIYFVSGIGANLISLAMDF 112
Query: 193 -LPKNAVSVGASGAVFGLFA 211
AVS GASGA+FGL
Sbjct: 113 YTGNLAVSAGASGAIFGLLG 132
>gi|116516863|ref|YP_817308.1| hypothetical protein SPD_1920 [Streptococcus pneumoniae D39]
gi|148984390|ref|ZP_01817678.1| peptidase, S54 (rhomboid) family protein [Streptococcus pneumoniae
SP3-BS71]
gi|148989912|ref|ZP_01821195.1| peptidase, S54 (rhomboid) family protein [Streptococcus pneumoniae
SP6-BS73]
gi|148992063|ref|ZP_01821837.1| peptidase, S54 (rhomboid) family protein [Streptococcus pneumoniae
SP9-BS68]
gi|149011950|ref|ZP_01833098.1| peptidase, S54 (rhomboid) family protein [Streptococcus pneumoniae
SP19-BS75]
gi|149023791|ref|ZP_01836252.1| peptidase, S54 (rhomboid) family protein [Streptococcus pneumoniae
SP23-BS72]
gi|168484394|ref|ZP_02709346.1| peptidase, S54 [Streptococcus pneumoniae CDC1873-00]
gi|168486909|ref|ZP_02711417.1| peptidase, S54 [Streptococcus pneumoniae CDC1087-00]
gi|168489154|ref|ZP_02713353.1| peptidase, S54 [Streptococcus pneumoniae SP195]
gi|168491619|ref|ZP_02715762.1| peptidase, S54 [Streptococcus pneumoniae CDC0288-04]
gi|168494152|ref|ZP_02718295.1| peptidase, S54 [Streptococcus pneumoniae CDC3059-06]
gi|169833711|ref|YP_001695455.1| peptidase, S54 [Streptococcus pneumoniae Hungary19A-6]
gi|221232802|ref|YP_002511956.1| rhomboid family membrane protein [Streptococcus pneumoniae ATCC
700669]
gi|225855581|ref|YP_002737093.1| peptidase, S54 [Streptococcus pneumoniae JJA]
gi|225859849|ref|YP_002741359.1| peptidase, S54 [Streptococcus pneumoniae 70585]
gi|225861910|ref|YP_002743419.1| peptidase, S54 [Streptococcus pneumoniae Taiwan19F-14]
gi|298229993|ref|ZP_06963674.1| hypothetical protein SpneCMD_04911 [Streptococcus pneumoniae str.
Canada MDR_19F]
gi|298254067|ref|ZP_06977653.1| hypothetical protein SpneCM_00442 [Streptococcus pneumoniae str.
Canada MDR_19A]
gi|298501592|ref|YP_003723532.1| rhomboid family protein [Streptococcus pneumoniae TCH8431/19A]
gi|307128354|ref|YP_003880385.1| peptidase, S54 [Streptococcus pneumoniae 670-6B]
gi|387627235|ref|YP_006063411.1| rhomboid family membrane protein [Streptococcus pneumoniae INV104]
gi|387758251|ref|YP_006065230.1| rhomboid family membrane protein [Streptococcus pneumoniae OXC141]
gi|387789131|ref|YP_006254199.1| hypothetical protein MYY_2012 [Streptococcus pneumoniae ST556]
gi|415700940|ref|ZP_11458283.1| rhomboid family protein [Streptococcus pneumoniae 459-5]
gi|415748039|ref|ZP_11476305.1| rhomboid family protein [Streptococcus pneumoniae SV35]
gi|415753292|ref|ZP_11480274.1| rhomboid family protein [Streptococcus pneumoniae SV36]
gi|417313553|ref|ZP_12100262.1| rhomboid family protein [Streptococcus pneumoniae GA04375]
gi|417680062|ref|ZP_12329455.1| rhomboid family protein [Streptococcus pneumoniae GA17570]
gi|417694958|ref|ZP_12344142.1| rhomboid family protein [Streptococcus pneumoniae GA47901]
gi|417697274|ref|ZP_12346449.1| rhomboid family protein [Streptococcus pneumoniae GA47368]
gi|418074941|ref|ZP_12712187.1| rhomboid family protein [Streptococcus pneumoniae GA11184]
gi|418079539|ref|ZP_12716758.1| rhomboid family protein [Streptococcus pneumoniae 4027-06]
gi|418081740|ref|ZP_12718946.1| rhomboid family protein [Streptococcus pneumoniae 6735-05]
gi|418083913|ref|ZP_12721105.1| rhomboid family protein [Streptococcus pneumoniae GA44288]
gi|418086077|ref|ZP_12723252.1| rhomboid family protein [Streptococcus pneumoniae GA47281]
gi|418090462|ref|ZP_12727612.1| rhomboid family protein [Streptococcus pneumoniae GA43265]
gi|418092703|ref|ZP_12729840.1| rhomboid family protein [Streptococcus pneumoniae GA44452]
gi|418094892|ref|ZP_12732015.1| rhomboid family protein [Streptococcus pneumoniae GA49138]
gi|418099426|ref|ZP_12736519.1| rhomboid family protein [Streptococcus pneumoniae 6901-05]
gi|418101571|ref|ZP_12738650.1| rhomboid family protein [Streptococcus pneumoniae 7286-06]
gi|418103822|ref|ZP_12740890.1| rhomboid family protein [Streptococcus pneumoniae NP070]
gi|418106219|ref|ZP_12743270.1| rhomboid family protein [Streptococcus pneumoniae GA44500]
gi|418108715|ref|ZP_12745748.1| rhomboid family protein [Streptococcus pneumoniae GA41410]
gi|418115606|ref|ZP_12752589.1| rhomboid family protein [Streptococcus pneumoniae 5787-06]
gi|418117772|ref|ZP_12754738.1| rhomboid family protein [Streptococcus pneumoniae 6963-05]
gi|418119800|ref|ZP_12756751.1| rhomboid family protein [Streptococcus pneumoniae GA18523]
gi|418124456|ref|ZP_12761383.1| rhomboid family protein [Streptococcus pneumoniae GA44378]
gi|418126729|ref|ZP_12763631.1| rhomboid family protein [Streptococcus pneumoniae GA44511]
gi|418128992|ref|ZP_12765881.1| rhomboid family protein [Streptococcus pneumoniae NP170]
gi|418135866|ref|ZP_12772716.1| rhomboid family protein [Streptococcus pneumoniae GA11426]
gi|418138194|ref|ZP_12775028.1| rhomboid family protein [Streptococcus pneumoniae GA11663]
gi|418142625|ref|ZP_12779433.1| rhomboid family protein [Streptococcus pneumoniae GA13455]
gi|418151600|ref|ZP_12788342.1| rhomboid family protein [Streptococcus pneumoniae GA14798]
gi|418153869|ref|ZP_12790603.1| rhomboid family protein [Streptococcus pneumoniae GA16121]
gi|418158449|ref|ZP_12795160.1| rhomboid family protein [Streptococcus pneumoniae GA16833]
gi|418163135|ref|ZP_12799813.1| rhomboid family protein [Streptococcus pneumoniae GA17328]
gi|418170210|ref|ZP_12806847.1| rhomboid family protein [Streptococcus pneumoniae GA19077]
gi|418172248|ref|ZP_12808865.1| rhomboid family protein [Streptococcus pneumoniae GA19451]
gi|418174517|ref|ZP_12811124.1| rhomboid family protein [Streptococcus pneumoniae GA41277]
gi|418176892|ref|ZP_12813480.1| rhomboid family protein [Streptococcus pneumoniae GA41437]
gi|418179222|ref|ZP_12815800.1| rhomboid family protein [Streptococcus pneumoniae GA41565]
gi|418185849|ref|ZP_12822385.1| rhomboid family protein [Streptococcus pneumoniae GA47283]
gi|418190327|ref|ZP_12826836.1| rhomboid family protein [Streptococcus pneumoniae GA47373]
gi|418192523|ref|ZP_12829022.1| rhomboid family protein [Streptococcus pneumoniae GA47388]
gi|418194641|ref|ZP_12831127.1| rhomboid family protein [Streptococcus pneumoniae GA47439]
gi|418196757|ref|ZP_12833228.1| rhomboid family protein [Streptococcus pneumoniae GA47688]
gi|418198946|ref|ZP_12835398.1| rhomboid family protein [Streptococcus pneumoniae GA47778]
gi|418201172|ref|ZP_12837611.1| rhomboid family protein [Streptococcus pneumoniae GA47976]
gi|418203330|ref|ZP_12839754.1| rhomboid family protein [Streptococcus pneumoniae GA52306]
gi|418215284|ref|ZP_12842015.1| rhomboid family protein [Streptococcus pneumoniae GA54644]
gi|418217545|ref|ZP_12844221.1| rhomboid family protein [Streptococcus pneumoniae
Netherlands15B-37]
gi|418219816|ref|ZP_12846478.1| rhomboid family protein [Streptococcus pneumoniae NP127]
gi|418222137|ref|ZP_12848786.1| rhomboid family protein [Streptococcus pneumoniae GA47751]
gi|418224304|ref|ZP_12850939.1| rhomboid family protein [Streptococcus pneumoniae 5185-06]
gi|418228591|ref|ZP_12855204.1| rhomboid family protein [Streptococcus pneumoniae 3063-00]
gi|418233075|ref|ZP_12859658.1| rhomboid family protein [Streptococcus pneumoniae GA07228]
gi|418235278|ref|ZP_12861851.1| rhomboid family protein [Streptococcus pneumoniae GA08780]
gi|418236202|ref|ZP_12862770.1| rhomboid family protein [Streptococcus pneumoniae GA19690]
gi|418239617|ref|ZP_12866164.1| rhomboid family protein [Streptococcus pneumoniae
NorthCarolina6A-23]
gi|419424066|ref|ZP_13964274.1| rhomboid family protein [Streptococcus pneumoniae GA43264]
gi|419426047|ref|ZP_13966238.1| rhomboid family protein [Streptococcus pneumoniae 7533-05]
gi|419428155|ref|ZP_13968332.1| rhomboid family protein [Streptococcus pneumoniae 5652-06]
gi|419430328|ref|ZP_13970487.1| rhomboid family protein [Streptococcus pneumoniae GA11856]
gi|419432489|ref|ZP_13972614.1| rhomboid family protein [Streptococcus pneumoniae EU-NP05]
gi|419434714|ref|ZP_13974828.1| rhomboid family protein [Streptococcus pneumoniae GA40183]
gi|419436907|ref|ZP_13976988.1| rhomboid family protein [Streptococcus pneumoniae 8190-05]
gi|419439071|ref|ZP_13979136.1| rhomboid family protein [Streptococcus pneumoniae GA13499]
gi|419441286|ref|ZP_13981326.1| rhomboid family protein [Streptococcus pneumoniae GA40410]
gi|419445614|ref|ZP_13985625.1| rhomboid family protein [Streptococcus pneumoniae GA19923]
gi|419447774|ref|ZP_13987775.1| rhomboid family protein [Streptococcus pneumoniae 7879-04]
gi|419449878|ref|ZP_13989871.1| rhomboid family protein [Streptococcus pneumoniae 4075-00]
gi|419452020|ref|ZP_13992000.1| rhomboid family protein [Streptococcus pneumoniae EU-NP02]
gi|419456346|ref|ZP_13996300.1| rhomboid family protein [Streptococcus pneumoniae EU-NP04]
gi|419460927|ref|ZP_14000850.1| rhomboid family protein [Streptococcus pneumoniae GA02270]
gi|419463231|ref|ZP_14003131.1| rhomboid family protein [Streptococcus pneumoniae GA02714]
gi|419465629|ref|ZP_14005517.1| rhomboid family protein [Streptococcus pneumoniae GA04175]
gi|419469896|ref|ZP_14009760.1| rhomboid family protein [Streptococcus pneumoniae GA06083]
gi|419474171|ref|ZP_14014016.1| rhomboid family protein [Streptococcus pneumoniae GA13430]
gi|419476484|ref|ZP_14016315.1| rhomboid family protein [Streptococcus pneumoniae GA14688]
gi|419480911|ref|ZP_14020712.1| rhomboid family protein [Streptococcus pneumoniae GA19101]
gi|419483105|ref|ZP_14022888.1| rhomboid family protein [Streptococcus pneumoniae GA40563]
gi|419485297|ref|ZP_14025068.1| rhomboid family protein [Streptococcus pneumoniae GA43257]
gi|419487632|ref|ZP_14027391.1| rhomboid family protein [Streptococcus pneumoniae GA44128]
gi|419489822|ref|ZP_14029568.1| rhomboid family protein [Streptococcus pneumoniae GA44386]
gi|419494215|ref|ZP_14033937.1| rhomboid family protein [Streptococcus pneumoniae GA47210]
gi|419496271|ref|ZP_14035985.1| rhomboid family protein [Streptococcus pneumoniae GA47461]
gi|419498467|ref|ZP_14038169.1| rhomboid family protein [Streptococcus pneumoniae GA47522]
gi|419500609|ref|ZP_14040300.1| rhomboid family protein [Streptococcus pneumoniae GA47597]
gi|419502755|ref|ZP_14042433.1| rhomboid family protein [Streptococcus pneumoniae GA47628]
gi|419509175|ref|ZP_14048823.1| rhomboid family protein [Streptococcus pneumoniae GA49542]
gi|419511273|ref|ZP_14050911.1| rhomboid family protein [Streptococcus pneumoniae NP141]
gi|419519812|ref|ZP_14059415.1| rhomboid family protein [Streptococcus pneumoniae GA08825]
gi|419524625|ref|ZP_14064194.1| rhomboid family protein [Streptococcus pneumoniae GA13723]
gi|419526829|ref|ZP_14066381.1| rhomboid family protein [Streptococcus pneumoniae GA14373]
gi|419529060|ref|ZP_14068597.1| rhomboid family protein [Streptococcus pneumoniae GA17719]
gi|419531194|ref|ZP_14070717.1| rhomboid family protein [Streptococcus pneumoniae GA40028]
gi|419535585|ref|ZP_14075079.1| rhomboid family protein [Streptococcus pneumoniae GA17457]
gi|421207596|ref|ZP_15664641.1| rhomboid family protein [Streptococcus pneumoniae 2090008]
gi|421209794|ref|ZP_15666803.1| rhomboid family protein [Streptococcus pneumoniae 2070005]
gi|421216149|ref|ZP_15673068.1| rhomboid family protein [Streptococcus pneumoniae 2070109]
gi|421221277|ref|ZP_15678108.1| rhomboid family protein [Streptococcus pneumoniae 2070425]
gi|421223533|ref|ZP_15680310.1| rhomboid family protein [Streptococcus pneumoniae 2070531]
gi|421225943|ref|ZP_15682677.1| rhomboid family protein [Streptococcus pneumoniae 2070768]
gi|421230647|ref|ZP_15687306.1| rhomboid family protein [Streptococcus pneumoniae 2061376]
gi|421234939|ref|ZP_15691554.1| rhomboid family protein [Streptococcus pneumoniae 2061617]
gi|421241560|ref|ZP_15698102.1| rhomboid family protein [Streptococcus pneumoniae 2080913]
gi|421250354|ref|ZP_15706806.1| rhomboid family protein [Streptococcus pneumoniae 2082239]
gi|421267071|ref|ZP_15717948.1| rhomboid family protein [Streptococcus pneumoniae SPAR27]
gi|421269269|ref|ZP_15720131.1| rhomboid family protein [Streptococcus pneumoniae SPAR95]
gi|421273768|ref|ZP_15724605.1| rhomboid family protein [Streptococcus pneumoniae SPAR55]
gi|421279854|ref|ZP_15730657.1| rhomboid family protein [Streptococcus pneumoniae GA17301]
gi|421282082|ref|ZP_15732875.1| hypothetical protein SPAR155_2090 [Streptococcus pneumoniae
GA04672]
gi|421286386|ref|ZP_15737158.1| hypothetical protein SPAR162_2031 [Streptococcus pneumoniae
GA60190]
gi|421288500|ref|ZP_15739258.1| hypothetical protein SPAR163_2033 [Streptococcus pneumoniae
GA58771]
gi|421290658|ref|ZP_15741405.1| hypothetical protein SPAR157_2063 [Streptococcus pneumoniae
GA54354]
gi|421292906|ref|ZP_15743637.1| hypothetical protein SPAR159_2152 [Streptococcus pneumoniae
GA56348]
gi|421295182|ref|ZP_15745900.1| hypothetical protein SPAR158_2106 [Streptococcus pneumoniae
GA56113]
gi|421299559|ref|ZP_15750242.1| hypothetical protein SPAR161_2129 [Streptococcus pneumoniae
GA60080]
gi|421300317|ref|ZP_15750988.1| hypothetical protein SPAR61_0639 [Streptococcus pneumoniae GA19998]
gi|421303768|ref|ZP_15754429.1| hypothetical protein SPAR47_1946 [Streptococcus pneumoniae GA17484]
gi|421306052|ref|ZP_15756703.1| hypothetical protein SPAR169_2178 [Streptococcus pneumoniae
GA62331]
gi|421308298|ref|ZP_15758936.1| hypothetical protein SPAR166_2138 [Streptococcus pneumoniae
GA60132]
gi|421310499|ref|ZP_15761121.1| hypothetical protein SPAR168_2080 [Streptococcus pneumoniae
GA62681]
gi|421312855|ref|ZP_15763452.1| hypothetical protein SPAR167_2216 [Streptococcus pneumoniae
GA58981]
gi|444382932|ref|ZP_21181129.1| peptidase, S54 family [Streptococcus pneumoniae PCS8106]
gi|444384227|ref|ZP_21182323.1| peptidase, S54 family [Streptococcus pneumoniae PCS8203]
gi|116077439|gb|ABJ55159.1| peptidase, S54 (rhomboid) family protein [Streptococcus pneumoniae
D39]
gi|147763905|gb|EDK70838.1| peptidase, S54 (rhomboid) family protein [Streptococcus pneumoniae
SP19-BS75]
gi|147923167|gb|EDK74281.1| peptidase, S54 (rhomboid) family protein [Streptococcus pneumoniae
SP3-BS71]
gi|147924697|gb|EDK75782.1| peptidase, S54 (rhomboid) family protein [Streptococcus pneumoniae
SP6-BS73]
gi|147929112|gb|EDK80123.1| peptidase, S54 (rhomboid) family protein [Streptococcus pneumoniae
SP9-BS68]
gi|147929587|gb|EDK80580.1| peptidase, S54 (rhomboid) family protein [Streptococcus pneumoniae
SP23-BS72]
gi|168996213|gb|ACA36825.1| peptidase, S54 [Streptococcus pneumoniae Hungary19A-6]
gi|172042352|gb|EDT50398.1| peptidase, S54 [Streptococcus pneumoniae CDC1873-00]
gi|183570160|gb|EDT90688.1| peptidase, S54 [Streptococcus pneumoniae CDC1087-00]
gi|183572305|gb|EDT92833.1| peptidase, S54 [Streptococcus pneumoniae SP195]
gi|183573986|gb|EDT94514.1| peptidase, S54 [Streptococcus pneumoniae CDC0288-04]
gi|183575916|gb|EDT96444.1| peptidase, S54 [Streptococcus pneumoniae CDC3059-06]
gi|220675264|emb|CAR69857.1| rhomboid family membrane protein [Streptococcus pneumoniae ATCC
700669]
gi|225721559|gb|ACO17413.1| peptidase, S54 [Streptococcus pneumoniae 70585]
gi|225722750|gb|ACO18603.1| peptidase, S54 [Streptococcus pneumoniae JJA]
gi|225727702|gb|ACO23553.1| peptidase, S54 [Streptococcus pneumoniae Taiwan19F-14]
gi|298237187|gb|ADI68318.1| rhomboid family protein [Streptococcus pneumoniae TCH8431/19A]
gi|301795021|emb|CBW37486.1| rhomboid family membrane protein [Streptococcus pneumoniae INV104]
gi|301800840|emb|CBW33497.1| rhomboid family membrane protein [Streptococcus pneumoniae OXC141]
gi|306485416|gb|ADM92285.1| peptidase, S54 [Streptococcus pneumoniae 670-6B]
gi|327388829|gb|EGE87177.1| rhomboid family protein [Streptococcus pneumoniae GA04375]
gi|332071527|gb|EGI82020.1| rhomboid family protein [Streptococcus pneumoniae GA17570]
gi|332198701|gb|EGJ12783.1| rhomboid family protein [Streptococcus pneumoniae GA47368]
gi|332198907|gb|EGJ12988.1| rhomboid family protein [Streptococcus pneumoniae GA47901]
gi|353745115|gb|EHD25786.1| rhomboid family protein [Streptococcus pneumoniae GA11184]
gi|353745282|gb|EHD25952.1| rhomboid family protein [Streptococcus pneumoniae 4027-06]
gi|353750062|gb|EHD30704.1| rhomboid family protein [Streptococcus pneumoniae 6735-05]
gi|353753437|gb|EHD34060.1| rhomboid family protein [Streptococcus pneumoniae GA44288]
gi|353754917|gb|EHD35527.1| rhomboid family protein [Streptococcus pneumoniae GA47281]
gi|353759462|gb|EHD40046.1| rhomboid family protein [Streptococcus pneumoniae GA43265]
gi|353761849|gb|EHD42413.1| rhomboid family protein [Streptococcus pneumoniae GA44452]
gi|353762429|gb|EHD42988.1| rhomboid family protein [Streptococcus pneumoniae GA49138]
gi|353767646|gb|EHD48178.1| rhomboid family protein [Streptococcus pneumoniae 6901-05]
gi|353768670|gb|EHD49193.1| rhomboid family protein [Streptococcus pneumoniae 7286-06]
gi|353773385|gb|EHD53882.1| rhomboid family protein [Streptococcus pneumoniae NP070]
gi|353774509|gb|EHD54998.1| rhomboid family protein [Streptococcus pneumoniae GA44500]
gi|353775172|gb|EHD55653.1| rhomboid family protein [Streptococcus pneumoniae GA41410]
gi|353783569|gb|EHD63996.1| rhomboid family protein [Streptococcus pneumoniae 5787-06]
gi|353786973|gb|EHD67382.1| rhomboid family protein [Streptococcus pneumoniae 6963-05]
gi|353788913|gb|EHD69309.1| rhomboid family protein [Streptococcus pneumoniae GA18523]
gi|353794068|gb|EHD74426.1| rhomboid family protein [Streptococcus pneumoniae GA44378]
gi|353794265|gb|EHD74622.1| rhomboid family protein [Streptococcus pneumoniae GA44511]
gi|353797042|gb|EHD77379.1| rhomboid family protein [Streptococcus pneumoniae NP170]
gi|353803747|gb|EHD84038.1| rhomboid family protein [Streptococcus pneumoniae GA13455]
gi|353811923|gb|EHD92159.1| rhomboid family protein [Streptococcus pneumoniae GA14798]
gi|353815195|gb|EHD95415.1| rhomboid family protein [Streptococcus pneumoniae GA16121]
gi|353820525|gb|EHE00709.1| rhomboid family protein [Streptococcus pneumoniae GA16833]
gi|353825270|gb|EHE05435.1| rhomboid family protein [Streptococcus pneumoniae GA17328]
gi|353832664|gb|EHE12780.1| rhomboid family protein [Streptococcus pneumoniae GA19077]
gi|353833451|gb|EHE13561.1| rhomboid family protein [Streptococcus pneumoniae GA19451]
gi|353835041|gb|EHE15136.1| rhomboid family protein [Streptococcus pneumoniae GA41277]
gi|353840206|gb|EHE20278.1| rhomboid family protein [Streptococcus pneumoniae GA41437]
gi|353840976|gb|EHE21036.1| rhomboid family protein [Streptococcus pneumoniae GA41565]
gi|353847287|gb|EHE27313.1| rhomboid family protein [Streptococcus pneumoniae GA47283]
gi|353851586|gb|EHE31577.1| rhomboid family protein [Streptococcus pneumoniae GA47373]
gi|353854357|gb|EHE34335.1| rhomboid family protein [Streptococcus pneumoniae GA47388]
gi|353854780|gb|EHE34751.1| rhomboid family protein [Streptococcus pneumoniae GA47439]
gi|353858789|gb|EHE38748.1| rhomboid family protein [Streptococcus pneumoniae GA47688]
gi|353859361|gb|EHE39312.1| rhomboid family protein [Streptococcus pneumoniae GA47778]
gi|353862605|gb|EHE42536.1| rhomboid family protein [Streptococcus pneumoniae GA47976]
gi|353865523|gb|EHE45431.1| rhomboid family protein [Streptococcus pneumoniae GA52306]
gi|353867574|gb|EHE47465.1| rhomboid family protein [Streptococcus pneumoniae GA54644]
gi|353868783|gb|EHE48667.1| rhomboid family protein [Streptococcus pneumoniae
Netherlands15B-37]
gi|353872115|gb|EHE51982.1| rhomboid family protein [Streptococcus pneumoniae NP127]
gi|353872532|gb|EHE52396.1| rhomboid family protein [Streptococcus pneumoniae GA47751]
gi|353876836|gb|EHE56681.1| rhomboid family protein [Streptococcus pneumoniae 5185-06]
gi|353878900|gb|EHE58728.1| rhomboid family protein [Streptococcus pneumoniae 3063-00]
gi|353884653|gb|EHE64448.1| rhomboid family protein [Streptococcus pneumoniae GA07228]
gi|353885001|gb|EHE64791.1| rhomboid family protein [Streptococcus pneumoniae GA08780]
gi|353891167|gb|EHE70924.1| rhomboid family protein [Streptococcus pneumoniae
NorthCarolina6A-23]
gi|353892434|gb|EHE72182.1| rhomboid family protein [Streptococcus pneumoniae GA19690]
gi|353899551|gb|EHE75120.1| rhomboid family protein [Streptococcus pneumoniae GA11663]
gi|353899974|gb|EHE75537.1| rhomboid family protein [Streptococcus pneumoniae GA11426]
gi|379138873|gb|AFC95664.1| hypothetical protein MYY_2012 [Streptococcus pneumoniae ST556]
gi|379529221|gb|EHY94471.1| rhomboid family protein [Streptococcus pneumoniae GA02270]
gi|379529268|gb|EHY94517.1| rhomboid family protein [Streptococcus pneumoniae GA02714]
gi|379535755|gb|EHZ00953.1| rhomboid family protein [Streptococcus pneumoniae GA04175]
gi|379535828|gb|EHZ01024.1| rhomboid family protein [Streptococcus pneumoniae GA13499]
gi|379542606|gb|EHZ07761.1| rhomboid family protein [Streptococcus pneumoniae GA06083]
gi|379548738|gb|EHZ13854.1| rhomboid family protein [Streptococcus pneumoniae GA11856]
gi|379549240|gb|EHZ14350.1| rhomboid family protein [Streptococcus pneumoniae GA13430]
gi|379554849|gb|EHZ19921.1| rhomboid family protein [Streptococcus pneumoniae GA13723]
gi|379555826|gb|EHZ20890.1| rhomboid family protein [Streptococcus pneumoniae GA14373]
gi|379557200|gb|EHZ22246.1| rhomboid family protein [Streptococcus pneumoniae GA14688]
gi|379561725|gb|EHZ26740.1| rhomboid family protein [Streptococcus pneumoniae GA17457]
gi|379562704|gb|EHZ27713.1| rhomboid family protein [Streptococcus pneumoniae GA17719]
gi|379569077|gb|EHZ34051.1| rhomboid family protein [Streptococcus pneumoniae GA19101]
gi|379569434|gb|EHZ34404.1| rhomboid family protein [Streptococcus pneumoniae GA19923]
gi|379570022|gb|EHZ34987.1| rhomboid family protein [Streptococcus pneumoniae GA40028]
gi|379574956|gb|EHZ39893.1| rhomboid family protein [Streptococcus pneumoniae GA40183]
gi|379575943|gb|EHZ40872.1| rhomboid family protein [Streptococcus pneumoniae GA40410]
gi|379577637|gb|EHZ42555.1| rhomboid family protein [Streptococcus pneumoniae GA40563]
gi|379580070|gb|EHZ44965.1| rhomboid family protein [Streptococcus pneumoniae GA43257]
gi|379584488|gb|EHZ49356.1| rhomboid family protein [Streptococcus pneumoniae GA43264]
gi|379584524|gb|EHZ49390.1| rhomboid family protein [Streptococcus pneumoniae GA44128]
gi|379585134|gb|EHZ49993.1| rhomboid family protein [Streptococcus pneumoniae GA44386]
gi|379591477|gb|EHZ56301.1| rhomboid family protein [Streptococcus pneumoniae GA47210]
gi|379591771|gb|EHZ56591.1| rhomboid family protein [Streptococcus pneumoniae GA47461]
gi|379597531|gb|EHZ62329.1| rhomboid family protein [Streptococcus pneumoniae GA47522]
gi|379597721|gb|EHZ62518.1| rhomboid family protein [Streptococcus pneumoniae GA47597]
gi|379597970|gb|EHZ62765.1| rhomboid family protein [Streptococcus pneumoniae GA47628]
gi|379609466|gb|EHZ74204.1| rhomboid family protein [Streptococcus pneumoniae GA49542]
gi|379611194|gb|EHZ75921.1| rhomboid family protein [Streptococcus pneumoniae 8190-05]
gi|379611514|gb|EHZ76237.1| rhomboid family protein [Streptococcus pneumoniae 7879-04]
gi|379616031|gb|EHZ80731.1| rhomboid family protein [Streptococcus pneumoniae 5652-06]
gi|379616453|gb|EHZ81148.1| rhomboid family protein [Streptococcus pneumoniae 7533-05]
gi|379620822|gb|EHZ85472.1| rhomboid family protein [Streptococcus pneumoniae 4075-00]
gi|379621239|gb|EHZ85887.1| rhomboid family protein [Streptococcus pneumoniae EU-NP02]
gi|379626309|gb|EHZ90927.1| rhomboid family protein [Streptococcus pneumoniae EU-NP04]
gi|379626522|gb|EHZ91139.1| rhomboid family protein [Streptococcus pneumoniae EU-NP05]
gi|379630353|gb|EHZ94939.1| rhomboid family protein [Streptococcus pneumoniae NP141]
gi|379637966|gb|EIA02512.1| rhomboid family protein [Streptococcus pneumoniae GA08825]
gi|381308939|gb|EIC49782.1| rhomboid family protein [Streptococcus pneumoniae SV36]
gi|381313455|gb|EIC54239.1| rhomboid family protein [Streptococcus pneumoniae 459-5]
gi|381319518|gb|EIC60218.1| rhomboid family protein [Streptococcus pneumoniae SV35]
gi|395571964|gb|EJG32565.1| rhomboid family protein [Streptococcus pneumoniae 2070005]
gi|395572268|gb|EJG32866.1| rhomboid family protein [Streptococcus pneumoniae 2090008]
gi|395579154|gb|EJG39659.1| rhomboid family protein [Streptococcus pneumoniae 2070109]
gi|395584265|gb|EJG44658.1| rhomboid family protein [Streptococcus pneumoniae 2070425]
gi|395585992|gb|EJG46370.1| rhomboid family protein [Streptococcus pneumoniae 2070531]
gi|395588031|gb|EJG48366.1| rhomboid family protein [Streptococcus pneumoniae 2070768]
gi|395592656|gb|EJG52915.1| rhomboid family protein [Streptococcus pneumoniae 2061376]
gi|395599316|gb|EJG59489.1| rhomboid family protein [Streptococcus pneumoniae 2061617]
gi|395606221|gb|EJG66329.1| rhomboid family protein [Streptococcus pneumoniae 2080913]
gi|395612471|gb|EJG72512.1| rhomboid family protein [Streptococcus pneumoniae 2082239]
gi|395865456|gb|EJG76595.1| rhomboid family protein [Streptococcus pneumoniae SPAR27]
gi|395866188|gb|EJG77319.1| rhomboid family protein [Streptococcus pneumoniae SPAR95]
gi|395872105|gb|EJG83205.1| rhomboid family protein [Streptococcus pneumoniae SPAR55]
gi|395877082|gb|EJG88152.1| rhomboid family protein [Streptococcus pneumoniae GA17301]
gi|395878529|gb|EJG89592.1| hypothetical protein SPAR155_2090 [Streptococcus pneumoniae
GA04672]
gi|395884842|gb|EJG95876.1| hypothetical protein SPAR162_2031 [Streptococcus pneumoniae
GA60190]
gi|395885132|gb|EJG96159.1| hypothetical protein SPAR163_2033 [Streptococcus pneumoniae
GA58771]
gi|395885562|gb|EJG96584.1| hypothetical protein SPAR157_2063 [Streptococcus pneumoniae
GA54354]
gi|395891154|gb|EJH02156.1| hypothetical protein SPAR159_2152 [Streptococcus pneumoniae
GA56348]
gi|395891539|gb|EJH02534.1| hypothetical protein SPAR158_2106 [Streptococcus pneumoniae
GA56113]
gi|395898079|gb|EJH09026.1| hypothetical protein SPAR161_2129 [Streptococcus pneumoniae
GA60080]
gi|395898185|gb|EJH09130.1| hypothetical protein SPAR47_1946 [Streptococcus pneumoniae GA17484]
gi|395899741|gb|EJH10680.1| hypothetical protein SPAR61_0639 [Streptococcus pneumoniae GA19998]
gi|395903736|gb|EJH14659.1| hypothetical protein SPAR169_2178 [Streptococcus pneumoniae
GA62331]
gi|395905101|gb|EJH16007.1| hypothetical protein SPAR166_2138 [Streptococcus pneumoniae
GA60132]
gi|395907607|gb|EJH18497.1| hypothetical protein SPAR167_2216 [Streptococcus pneumoniae
GA58981]
gi|395908114|gb|EJH18997.1| hypothetical protein SPAR168_2080 [Streptococcus pneumoniae
GA62681]
gi|429316870|emb|CCP36597.1| rhomboid family membrane protein [Streptococcus pneumoniae
SPN034156]
gi|429320222|emb|CCP33561.1| rhomboid family membrane protein [Streptococcus pneumoniae
SPN034183]
gi|429322041|emb|CCP35535.1| rhomboid family membrane protein [Streptococcus pneumoniae
SPN994039]
gi|429323861|emb|CCP31576.1| rhomboid family membrane protein [Streptococcus pneumoniae
SPN994038]
gi|444250863|gb|ELU57338.1| peptidase, S54 family [Streptococcus pneumoniae PCS8106]
gi|444252881|gb|ELU59341.1| peptidase, S54 family [Streptococcus pneumoniae PCS8203]
Length = 225
Score = 50.4 bits (119), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 62/129 (48%), Gaps = 11/129 (8%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
++ ++A F H W H N+ LY G+ VEE G+ + Y+ +G N ++ PK
Sbjct: 59 WRLLSAIFVHIGWEHFIVNMLSLYYLGRQVEEIFGSKQFFFLYLLSGMMGNLFVFVFSPK 118
Query: 196 NAVSVGASGAVFGLFAISVLVK----------MSWDWRKILEVLILGQFVVEKVMEAAQA 245
+ ++ GAS +++GLFA ++++ + + + V I+G ++ + A
Sbjct: 119 S-LAAGASTSLYGLFAAIIVLRYATRNPYIQQLGQSYLTLFVVNIIGSVLIPGISLAGHI 177
Query: 246 SAGMSGTFI 254
+ G F+
Sbjct: 178 GGAVGGAFL 186
>gi|84625976|ref|YP_453348.1| hypothetical protein XOO_4319 [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|84369916|dbj|BAE71074.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
311018]
Length = 230
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 137 QFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVS-WLILPK 195
+ TA F HA+W+HL NL FL IFG E G + L L ++ GAA+N + + I
Sbjct: 70 RLFTALFLHADWSHLLGNLMFLLIFGLPAERILGPWRLLLLFLVGGAASNLAAIFAIGTP 129
Query: 196 NAVSVGASGAV 206
+ V +GASGAV
Sbjct: 130 DRVIIGASGAV 140
>gi|377809821|ref|YP_005005042.1| rhomboid family protein [Pediococcus claussenii ATCC BAA-344]
gi|361056562|gb|AEV95366.1| rhomboid family protein [Pediococcus claussenii ATCC BAA-344]
Length = 229
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 66/147 (44%), Gaps = 12/147 (8%)
Query: 131 NFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSW 190
N ++ + F H HL N+ LY G+++E G++ +Y+ G N VS
Sbjct: 57 NGSDYFSIFASMFIHIGIEHLVLNMVTLYFLGRILEAIMGHWKFLATYLLAGVFGNLVSL 116
Query: 191 LILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMS 250
+S GASGA+FG+ I V + ++ +R + + +GQ ++ +
Sbjct: 117 YFANPQTISAGASGAIFGI--IGVWLMLAITFRSVPYLAQMGQQMLIFTILG-------- 166
Query: 251 GTFIGGYSVQSINHIAHLSGALFGVFL 277
IGG+ ++ AHL G L G L
Sbjct: 167 --LIGGFLGPDVDIAAHLGGVLAGFLL 191
>gi|302554899|ref|ZP_07307241.1| integral membrane protein [Streptomyces viridochromogenes DSM
40736]
gi|302472517|gb|EFL35610.1| integral membrane protein [Streptomyces viridochromogenes DSM
40736]
Length = 300
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 139 VTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANF-VSWLILPKNA 197
+TA F H +W HL N+ FL+IFG +E+ G+ L Y+ G AA + + L A
Sbjct: 132 LTAMFLHGSWLHLLGNMLFLWIFGNNIEDRMGHLRFLLFYVVCGYAAGYGFALLNADSGA 191
Query: 198 VSVGASGAVFGLFA 211
+GASGA+ G+
Sbjct: 192 PLIGASGAIAGVLG 205
>gi|347753198|ref|YP_004860763.1| Rhomboid family protein [Bacillus coagulans 36D1]
gi|347585716|gb|AEP01983.1| Rhomboid family protein [Bacillus coagulans 36D1]
Length = 377
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+++ +T F H + HL N LY G LVE G L Y+F G S+L P
Sbjct: 217 YWRLITPVFIHIGFMHLFMNSLSLYYIGPLVERIYGKGRFALIYLFAGFTGCLASFLFSP 276
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSW 220
++S GASGA+FGLF + + ++
Sbjct: 277 --SLSAGASGAIFGLFGALLYIGTAY 300
>gi|111226097|ref|YP_716891.1| hypothetical protein FRAAL6764 [Frankia alni ACN14a]
gi|111153629|emb|CAJ65387.1| Hypothetical protein; putative membrane protein [Frankia alni
ACN14a]
Length = 252
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 54/98 (55%), Gaps = 4/98 (4%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGA-AANFVSWLIL 193
+Y+ +TAAF HA H+ N++ LY+ G +E G +L GA N +S+L+
Sbjct: 90 YYRLLTAAFLHAGVLHILFNMYALYLLGFQLEAILGR-ARYLGLFVAGAVGGNTLSYLLG 148
Query: 194 PKNAVSVGASGAVFGLFAISVLV--KMSWDWRKILEVL 229
+ SVGAS A+F FA ++ ++ D R+IL VL
Sbjct: 149 GLSTASVGASTAIFAFFAAYYVIARRLRVDSRQILVVL 186
>gi|269837806|ref|YP_003320034.1| rhomboid family protein [Sphaerobacter thermophilus DSM 20745]
gi|269787069|gb|ACZ39212.1| Rhomboid family protein [Sphaerobacter thermophilus DSM 20745]
Length = 245
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 132 FPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWL 191
FP + +T+ F H W HL N+ FL+IFG VE+ G+ + Y+ G A
Sbjct: 66 FPIYLTILTSMFLHGGWAHLLGNMLFLWIFGDNVEDSMGHLRYLIFYLLGGIGAALAQIF 125
Query: 192 ILPKNAVS--VGASGAV 206
+ ++ + +GASGA+
Sbjct: 126 LAGPDSTTPMIGASGAI 142
>gi|359414482|ref|ZP_09206947.1| Rhomboid family protein [Clostridium sp. DL-VIII]
gi|357173366|gb|EHJ01541.1| Rhomboid family protein [Clostridium sp. DL-VIII]
Length = 332
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 100/215 (46%), Gaps = 44/215 (20%)
Query: 82 QLELDKPEERRKPKKSVN-------GVFWIILLNLGLYVADHVFQVRSIKSLY------- 127
Q+ K + +K K+ N G+ ++ L L +++ ++F + + +Y
Sbjct: 124 QINERKNGQSKKEHKNYNILTFILIGINIVVFL-LTAFISGNIFDIDTRVLIYFGAKINI 182
Query: 128 LYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANF 187
L + W + +T AF H+ H+ N++ LYI G +E+ G + Y+ + A+
Sbjct: 183 LIDHGEIW-RLLTCAFLHSGLIHIVCNMYSLYIIGPQIEQIYGIRKYLIIYLISCITASI 241
Query: 188 VSWLILPKNAVSVGASGAVFGLFAISV---LVKMSWDWRK----ILEVLILGQFVVEKVM 240
S+ + P N +++GASG +FGL + L++ + +K +L+++ + F+
Sbjct: 242 SSYFLNP-NGIAIGASGGIFGLMGALLAFALIERNRIQKKFLSSLLQIIAINLFI----- 295
Query: 241 EAAQASAGMSGTFIGGYSVQSINHIAHLSGALFGV 275
G S+++I++ AH+ G + G+
Sbjct: 296 ---------------GLSIKNIDNFAHIGGLVGGI 315
>gi|417926806|ref|ZP_12570194.1| peptidase, S54 family [Streptococcus dysgalactiae subsp.
equisimilis SK1250]
gi|340764680|gb|EGR87206.1| peptidase, S54 family [Streptococcus dysgalactiae subsp.
equisimilis SK1250]
Length = 224
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAAN-FVSWLILP 194
++ VT F H W H N LY G++ EE G+ L Y+F+G N F W L
Sbjct: 58 WRLVTPIFVHIGWGHFFVNALTLYFVGQMAEEIWGSHRFLLLYVFSGVMGNAFAMW--LT 115
Query: 195 KNAVSVGASGAVFGLFA 211
V+ GAS ++FGLFA
Sbjct: 116 PETVAAGASTSLFGLFA 132
>gi|325297592|ref|YP_004257509.1| Peptidase S54, rhomboid domain [Bacteroides salanitronis DSM 18170]
gi|324317145|gb|ADY35036.1| Peptidase S54, rhomboid domain [Bacteroides salanitronis DSM 18170]
Length = 963
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 71/148 (47%), Gaps = 21/148 (14%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ VT F H HL N++ L G +E+ G+ L +Y+ TG + S P
Sbjct: 585 WWRTVTCNFIHIGIIHLLMNMYALLYIGIFLEQIIGSRKLMTAYLLTGLFSALASLTAHP 644
Query: 195 KNAVSVGASGAVFGLFAI--SVLV---KMSWDWRKILEVLILGQFVVEKVMEAAQASAGM 249
+ +S GASG++FGL+ I S L+ K+ RK L + +G FV+ ++
Sbjct: 645 E-TISAGASGSIFGLYGIFLSYLIFNHKIEKHQRKSL-LFSIGFFVIYNLLL-------- 694
Query: 250 SGTFIGGYSVQSINHIAHLSGALFGVFL 277
G + I++ AH+ G + GV L
Sbjct: 695 ------GTKEEGIDNAAHIGGLVSGVIL 716
>gi|302546086|ref|ZP_07298428.1| S54 (rhomboid) family peptidase [Streptomyces hygroscopicus ATCC
53653]
gi|302463704|gb|EFL26797.1| S54 (rhomboid) family peptidase [Streptomyces himastatinicus ATCC
53653]
Length = 245
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 42/80 (52%), Gaps = 13/80 (16%)
Query: 139 VTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTG-------AAANFVSWL 191
+TA F H NW HL N+ FLY+FG + EE G L Y+ TG AAA+ S
Sbjct: 82 LTALFVHGNWLHLLGNMLFLYVFGAMTEERMGRMHFALFYLVTGYLALLGYAAAHASS-- 139
Query: 192 ILPKNAVSVGASGAVFGLFA 211
P+ VGASGA+ G+
Sbjct: 140 --PQTL--VGASGAISGVLG 155
>gi|126739140|ref|ZP_01754834.1| rhomboid family protein [Roseobacter sp. SK209-2-6]
gi|126719757|gb|EBA16465.1| rhomboid family protein [Roseobacter sp. SK209-2-6]
Length = 287
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 137 QFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKN 196
+++ F HA HL+ N+ FL+IFG +EEE G+ L Y+ +G A + P +
Sbjct: 94 SLLSSIFVHAGLMHLAGNMLFLWIFGDNMEEEMGHIPFLLFYLASGIGAGLIHVWSAPNS 153
Query: 197 AV-SVGASGAVFGLFAISVLV 216
V +VGASGA+ G+ +L+
Sbjct: 154 LVPTVGASGAIAGVMGGYLLL 174
>gi|118591392|ref|ZP_01548790.1| hypothetical protein SIAM614_27133 [Stappia aggregata IAM 12614]
gi|118436064|gb|EAV42707.1| hypothetical protein SIAM614_27133 [Stappia aggregata IAM 12614]
Length = 230
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 72/159 (45%), Gaps = 28/159 (17%)
Query: 132 FPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFV-SW 190
P W VT +F H ++ HL N+ FL++FG VE+ G+ L Y+ A +
Sbjct: 70 LPDWMSVVTYSFLHGSFMHLIGNMLFLWVFGDNVEDAVGHLRYLLFYLLCAIAGGLAYAS 129
Query: 191 LILPKNAVSVGASGAVFGLFAISVL----VKMSWDW--------RKILEVLILGQFVVEK 238
L + + +GASGAV G+ A ++ VK+ W ++ V +LG ++V +
Sbjct: 130 LDVNSDVPLIGASGAVSGVVAAYLMLHPRVKV---WVLALGRIPLRLSAVWLLGGWIVYQ 186
Query: 239 VMEAAQASAGMSGTFIGGYSVQSINHIAHLSGALFGVFL 277
++ A AS I IAH+ G + G L
Sbjct: 187 IVNAVIASD------------SDIAWIAHIGGMVAGALL 213
>gi|429205379|ref|ZP_19196656.1| Integral membrane protein, Rhomboid family [Lactobacillus
saerimneri 30a]
gi|428146451|gb|EKW98690.1| Integral membrane protein, Rhomboid family [Lactobacillus
saerimneri 30a]
Length = 224
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ + A F H HL N+ LY G +E+ G+ + + Y+ +G N +S P
Sbjct: 66 WWRLIAAMFLHDGIGHLFINMITLYFIGPEIEDHYGHARMLVIYLLSGLYGNLLSAFWAP 125
Query: 195 KNAVSVGASGAVFGLFA 211
++VGASGA+FGLF
Sbjct: 126 TT-LAVGASGALFGLFG 141
>gi|312623545|ref|YP_004025158.1| rhomboid family protein [Caldicellulosiruptor kronotskyensis 2002]
gi|312204012|gb|ADQ47339.1| Rhomboid family protein [Caldicellulosiruptor kronotskyensis 2002]
Length = 242
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 139 VTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAV 198
+ + F H +W HL SN++ L++FG VE+ G+F + Y+ +G +A + W + V
Sbjct: 73 ICSMFMHGSWMHLISNMWSLWLFGDNVEDRVGHFRFLIFYLLSGFSAAYTHWFFNANSLV 132
Query: 199 S-VGASGAVFGL 209
+ VGASGA+ G+
Sbjct: 133 AVVGASGAIAGV 144
>gi|297849660|ref|XP_002892711.1| rhomboid family protein [Arabidopsis lyrata subsp. lyrata]
gi|297338553|gb|EFH68970.1| rhomboid family protein [Arabidopsis lyrata subsp. lyrata]
Length = 307
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 77/142 (54%), Gaps = 13/142 (9%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
++ +TA + HA HL +N+F + FG +E++ G + L Y+ +G + +S L L +
Sbjct: 98 WRLITAMWLHAGIFHLFTNMFNVIFFGIRLEQQFGFLRIGLIYLISGFGGSILSALFL-Q 156
Query: 196 NAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIG 255
N++SVGASGA+ GL ++L ++ +W I E + F + ++ A + G+
Sbjct: 157 NSISVGASGALLGLIG-AMLSELVINW-TIYESKLCALFSILFII-ALDLAIGL------ 207
Query: 256 GYSVQSINHIAHLSGALFGVFL 277
+ +++ AH+ G L G FL
Sbjct: 208 ---LPWVDNFAHIGGLLTGFFL 226
>gi|297562081|ref|YP_003681055.1| rhomboid family protein [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
gi|296846529|gb|ADH68549.1| Rhomboid family protein [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
Length = 254
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 5/101 (4%)
Query: 133 PAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLI 192
P W+ ++ F H+ HL NL +L++FG +VE+ G Y+ TG AA + L
Sbjct: 88 PVWFSVFSSMFLHSGPGHLIGNLVYLFVFGPVVEDRIGKLRFTGLYLATGVAAAYGFALT 147
Query: 193 LPKNAVS-VGASGAVFGLFAISVLVKMSWDWRKILEVLILG 232
A+ VGASGA+ G+ ++V+ +R + L+ G
Sbjct: 148 DVDAAMPMVGASGAISGVLGAYLVVQ----FRSRVTTLVFG 184
>gi|17549219|ref|NP_522559.1| hypothetical protein RS02331 [Ralstonia solanacearum GMI1000]
gi|17431471|emb|CAD18149.1| putative uncharacterized membrane transmembrane protein [Ralstonia
solanacearum GMI1000]
Length = 197
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 72/145 (49%), Gaps = 22/145 (15%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLI--- 192
+Q +T AF HA+ HL N+F +++FG+ VE G + Y+ + +A F +
Sbjct: 46 WQLLTYAFLHASVPHLVFNMFGMFMFGRDVERALGRVRTGVLYLASVLSAAFTQMAVMGL 105
Query: 193 --LPKNAVSVGASGAVFG-LFAISVLVKMSWDWRKILEVLI----LGQFVVEKVMEAAQA 245
LP + VGASG VFG L A +VL R+++ +LI + ++ V +
Sbjct: 106 STLPAGPI-VGASGGVFGLLLAYAVLFP-----RRMILLLIPPIPMPAWLFATVYALVEL 159
Query: 246 SAGMSGTFIGGYSVQSINHIAHLSG 270
+ G+SG+ G I H AHL G
Sbjct: 160 TLGISGSHSG------IAHFAHLGG 178
>gi|86138617|ref|ZP_01057190.1| rhomboid family protein [Roseobacter sp. MED193]
gi|85824677|gb|EAQ44879.1| rhomboid family protein [Roseobacter sp. MED193]
Length = 261
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 140 TAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAV- 198
T+AF H HL N+ FL+IFG +E+E G+ Y+ G A + L P + V
Sbjct: 66 TSAFIHGGLMHLGGNMLFLWIFGDNLEDEMGHLPFLAFYLACGLGAGVIHVLAAPTSQVP 125
Query: 199 SVGASGAVFGLFA 211
++GASGA+ G+
Sbjct: 126 TIGASGAIAGVMG 138
>gi|367037003|ref|XP_003648882.1| hypothetical protein THITE_2106847 [Thielavia terrestris NRRL 8126]
gi|346996143|gb|AEO62546.1| hypothetical protein THITE_2106847 [Thielavia terrestris NRRL 8126]
Length = 516
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 70/144 (48%), Gaps = 14/144 (9%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++F+T F HA H+ N+ G+ +E+ G+ +L Y+ G +
Sbjct: 275 WFRFITPIFMHAGVIHIGFNMLLQLTLGRDMEKSIGSIRFFLVYMSAGIFGFVLGGNFAA 334
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWR-KILEVLILGQFVVEKVMEAAQASAGMSGTF 253
S GASGA+FG+ A++ L+ + + WR ++ V L V++ V+ +F
Sbjct: 335 TGIASTGASGALFGIIALT-LLDLLYSWRDRVNPVRDLAFIVLDVVI-----------SF 382
Query: 254 IGGYSVQSINHIAHLSGALFGVFL 277
+ G + +++ +H+ G L G+ L
Sbjct: 383 VLGL-LPGLDNFSHIGGFLMGLAL 405
>gi|419766541|ref|ZP_14292734.1| peptidase, S54 family [Streptococcus mitis SK579]
gi|383354006|gb|EID31593.1| peptidase, S54 family [Streptococcus mitis SK579]
Length = 226
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 59/125 (47%), Gaps = 11/125 (8%)
Query: 140 TAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVS 199
+A F H W H N+ LY G+ VEE G+ + Y+ +G N ++ PK+ ++
Sbjct: 63 SAIFVHIGWEHFIVNMLSLYYLGRQVEEIFGSKKFFFLYLLSGMMGNLFVFVFSPKS-LA 121
Query: 200 VGASGAVFGLFAISVLVK----------MSWDWRKILEVLILGQFVVEKVMEAAQASAGM 249
GAS +++GLFA ++++ + + + V I+G ++ + A +
Sbjct: 122 AGASTSLYGLFAAIIVLRYATRNPYIQQLGQSYLTLFVVNIIGSVLIPGISLAGHIGGAV 181
Query: 250 SGTFI 254
G F+
Sbjct: 182 GGAFL 186
>gi|89070486|ref|ZP_01157779.1| rhomboid family protein [Oceanicola granulosus HTCC2516]
gi|89043890|gb|EAR50081.1| rhomboid family protein [Oceanicola granulosus HTCC2516]
Length = 262
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 138 FVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNA 197
VT F H + H+ N+ FL+IFG +EEE G+ G L Y+ +G A + P +
Sbjct: 64 LVTHMFLHGGFMHILGNMLFLWIFGDNLEEEMGHVGFLLFYLASGLGAGLAQYAGEPLSQ 123
Query: 198 VS-VGASGAVFGLFA 211
+ VGASGA+ G+
Sbjct: 124 IPMVGASGAIAGVMG 138
>gi|291286362|ref|YP_003503178.1| rhomboid family protein [Denitrovibrio acetiphilus DSM 12809]
gi|290883522|gb|ADD67222.1| Rhomboid family protein [Denitrovibrio acetiphilus DSM 12809]
Length = 221
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 139 VTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAV 198
+T+ F H + H+ N++FL+IFG VE++ G+ L Y+ G AA ++ P + V
Sbjct: 70 LTSMFMHGGFMHIIGNMYFLFIFGDNVEDKLGHIRYLLIYLLFGVAAAATQIIMFPDSVV 129
Query: 199 S-VGASGAVFGL 209
VGASGA+ G+
Sbjct: 130 PMVGASGAIAGV 141
>gi|407779515|ref|ZP_11126770.1| rhomboid-like protein [Nitratireductor pacificus pht-3B]
gi|407298646|gb|EKF17783.1| rhomboid-like protein [Nitratireductor pacificus pht-3B]
Length = 255
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 133 PAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLI 192
P + ++T +F H + HL N+ FL++FG VE+ G+F + Y+ A ++ I
Sbjct: 70 PEPFTYITYSFLHGDLLHLGGNMLFLWVFGDNVEDALGHFRYLVFYLACAVAGAYLHGFI 129
Query: 193 LPKNAVS-VGASGAVFGLFA 211
P ++ +GASGA+ G+ A
Sbjct: 130 EPASSSPLIGASGAIAGIVA 149
>gi|417097158|ref|ZP_11959070.1| putative peptidase protein [Rhizobium etli CNPAF512]
gi|327193375|gb|EGE60275.1| putative peptidase protein [Rhizobium etli CNPAF512]
Length = 262
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 1/85 (1%)
Query: 133 PAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLI 192
P ++T AF H+ + HL+SN+ FL++FG VE+ G+ L Y+ AA L+
Sbjct: 70 PEPMTYLTYAFVHSGFWHLASNMVFLWVFGDNVEDAMGHMRFLLFYLLCAAAGALCHGLL 129
Query: 193 LPK-NAVSVGASGAVFGLFAISVLV 216
A VGASGA+ G+ A V++
Sbjct: 130 TTSPEAPLVGASGAISGVVAAYVML 154
>gi|418738312|ref|ZP_13294708.1| peptidase, S54 family [Leptospira borgpetersenii serovar
Castellonis str. 200801910]
gi|410746486|gb|EKQ99393.1| peptidase, S54 family [Leptospira borgpetersenii serovar
Castellonis str. 200801910]
Length = 197
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 66/145 (45%), Gaps = 12/145 (8%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+Y +T+ F HA+W HL N+ Y FGK +E G L Y+ T + +SW
Sbjct: 40 YYTLITSGFIHADWMHLIFNMISFYSFGKNLETTVGPIKFLLFYLGTILITSVISWRKNL 99
Query: 195 KNAV--SVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGT 252
+N + ++GASG V G+ ++L + + F+ + A A + T
Sbjct: 100 ENPLYATLGASGGVCGVLFATILFYPNLS--------LYMMFIPIPIPGAIYAVLYLVYT 151
Query: 253 FIGGYSVQS--INHIAHLSGALFGV 275
+ S S INH AHL G L G+
Sbjct: 152 YFSSKSGHSDGINHDAHLWGTLCGI 176
>gi|410452631|ref|ZP_11306595.1| hypothetical protein BABA_02602 [Bacillus bataviensis LMG 21833]
gi|409934113|gb|EKN71029.1| hypothetical protein BABA_02602 [Bacillus bataviensis LMG 21833]
Length = 193
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 2/122 (1%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
++ +T F H+ + H+ N F L +FG +E G Y+ +G AN + L+ P
Sbjct: 59 WRLITPTFMHSGFAHMLFNSFSLVLFGPALERMLGGGRFLFVYLLSGLIANVATLLLEPL 118
Query: 196 NAVSVGASGAVFGLFA--ISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTF 253
VG+SGA+FGLF I++++ K +IL VV +M Q + ++
Sbjct: 119 TYTHVGSSGAIFGLFGYYIAIIIFRKHMLSKQNSQIILVLCVVSLIMTFFQPNINITAHL 178
Query: 254 IG 255
G
Sbjct: 179 FG 180
>gi|340358738|ref|ZP_08681246.1| rhomboid family protein [Actinomyces sp. oral taxon 448 str. F0400]
gi|339885875|gb|EGQ75566.1| rhomboid family protein [Actinomyces sp. oral taxon 448 str. F0400]
Length = 280
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 6/82 (7%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTG-AAANFVSWLILP 194
++FVT AF HA+ HL+ N++ L++ G +E G + Y+ + + + WL P
Sbjct: 113 WRFVTTAFLHASLWHLAFNMWALWVLGSALEPVLGRWRFAALYVLSAVGGSTMIYWLASP 172
Query: 195 KN-----AVSVGASGAVFGLFA 211
++VGASGAVFGLFA
Sbjct: 173 VTMSSWWGLTVGASGAVFGLFA 194
>gi|289167049|ref|YP_003445316.1| hypothetical protein smi_0146 [Streptococcus mitis B6]
gi|288906614|emb|CBJ21448.1| conserved hypothetical protein [Streptococcus mitis B6]
Length = 225
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 59/125 (47%), Gaps = 11/125 (8%)
Query: 140 TAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVS 199
+A F H W H N+ LY G+ VEE G+ + Y+ +G N ++ PK+ ++
Sbjct: 63 SAIFVHIGWEHFIVNMLSLYYLGRQVEEIFGSKKFFFLYLLSGMMGNLFVFVFSPKS-LA 121
Query: 200 VGASGAVFGLFAISVLVK----------MSWDWRKILEVLILGQFVVEKVMEAAQASAGM 249
GAS +++GLFA ++++ + + + V I+G ++ + A +
Sbjct: 122 AGASTSLYGLFAAIIILRYATRNPYIQQLGQSYLTLFVVNIIGSVLIPGISLAGHIGGAV 181
Query: 250 SGTFI 254
G F+
Sbjct: 182 GGAFL 186
>gi|418086338|ref|ZP_12723511.1| rhomboid family protein [Streptococcus pneumoniae GA47033]
gi|418111074|ref|ZP_12748090.1| rhomboid family protein [Streptococcus pneumoniae GA49447]
gi|353760397|gb|EHD40974.1| rhomboid family protein [Streptococcus pneumoniae GA47033]
gi|353780740|gb|EHD61196.1| rhomboid family protein [Streptococcus pneumoniae GA49447]
Length = 215
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 62/129 (48%), Gaps = 11/129 (8%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
++ ++A F H W H N+ LY G+ VEE G+ + Y+ +G N ++ PK
Sbjct: 49 WRLLSAIFVHIGWEHFIVNMLSLYYLGRQVEEIFGSKQFFFLYLLSGMMGNLFVFVFSPK 108
Query: 196 NAVSVGASGAVFGLFAISVLVK----------MSWDWRKILEVLILGQFVVEKVMEAAQA 245
+ ++ GAS +++GLFA ++++ + + + V I+G ++ + A
Sbjct: 109 S-LAAGASTSLYGLFAAIIVLRYATRNPYIQQLGQSYLTLFVVNIIGSVLIPGISLAGHI 167
Query: 246 SAGMSGTFI 254
+ G F+
Sbjct: 168 GGAVGGAFL 176
>gi|260665468|ref|ZP_05866315.1| membrane-associated serine protease [Lactobacillus jensenii
SJ-7A-US]
gi|260560736|gb|EEX26713.1| membrane-associated serine protease [Lactobacillus jensenii
SJ-7A-US]
Length = 215
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ TA F H HL N L+ G+ +E G+ + Y+ G N ++ +
Sbjct: 45 WWRLFTAQFLHIGLLHLVVNCVTLFYMGQYLEPMLGHVRFLIIYLLAGVGGNLMTLALGS 104
Query: 195 KNAVSVGASGAVFGLFA 211
NAVS GAS A+FGLF
Sbjct: 105 DNAVSAGASTALFGLFG 121
>gi|401684491|ref|ZP_10816369.1| peptidase, S54 family [Streptococcus sp. BS35b]
gi|400185513|gb|EJO19742.1| peptidase, S54 family [Streptococcus sp. BS35b]
Length = 226
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 83/184 (45%), Gaps = 22/184 (11%)
Query: 90 ERRKPKKS----VNG-VFWIILLNLGLYVADHVFQVRSIKSLY--LYHNFPA--WYQFVT 140
++R P S V G VF ++L+ G+ D + ++Y + FP W F +
Sbjct: 6 DKRYPVTSFFLLVTGFVFLLMLITTGINF-DQAKTLFQFGAMYGPIIRLFPEQIWRLF-S 63
Query: 141 AAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSV 200
A F H W H N+ LY G+ VEE G+ +L Y+ +G N + PK ++
Sbjct: 64 AIFVHIGWEHFIVNMISLYFLGQQVEEIFGSKQFFLLYLLSGMMGNLFVFAFTPK-VLAA 122
Query: 201 GASGAVFGLFAISVLVK----------MSWDWRKILEVLILGQFVVEKVMEAAQASAGMS 250
GAS +++GLFA ++++ + + + + I+G ++ + A +
Sbjct: 123 GASTSLYGLFAAIIVLRYATRSPYIQQLGQSYLTLFVINIIGSILIPGISLAGHIGGAVG 182
Query: 251 GTFI 254
G F+
Sbjct: 183 GAFL 186
>gi|418975847|ref|ZP_13523744.1| peptidase, S54 family [Streptococcus oralis SK1074]
gi|383346996|gb|EID25002.1| peptidase, S54 family [Streptococcus oralis SK1074]
Length = 226
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 83/184 (45%), Gaps = 22/184 (11%)
Query: 90 ERRKPKKS----VNG-VFWIILLNLGLYVADHVFQVRSIKSLY--LYHNFPA--WYQFVT 140
++R P S V G VF ++L+ G+ D + ++Y + FP W F +
Sbjct: 6 DKRYPVTSFFLLVTGFVFLLMLITTGINF-DQAKTLFQFGAMYGPIIRLFPEQIWRLF-S 63
Query: 141 AAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSV 200
A F H W H N+ LY G+ VEE G+ +L Y+ +G N + PK ++
Sbjct: 64 AIFVHIGWEHFIVNMISLYFLGQQVEEIFGSKQFFLLYLLSGMMGNLFVFAFTPK-VLAA 122
Query: 201 GASGAVFGLFAISVLVK----------MSWDWRKILEVLILGQFVVEKVMEAAQASAGMS 250
GAS +++GLFA ++++ + + + + I+G ++ + A +
Sbjct: 123 GASTSLYGLFAAIIVLRYATRSPYIQQLGQSYLTLFVINIIGSILIPGISLAGHIGGAVG 182
Query: 251 GTFI 254
G F+
Sbjct: 183 GAFL 186
>gi|310641361|ref|YP_003946119.1| rhomboid family protein [Paenibacillus polymyxa SC2]
gi|386040403|ref|YP_005959357.1| rhomboid protease gluP Intramembrane serine protease [Paenibacillus
polymyxa M1]
gi|309246311|gb|ADO55878.1| Rhomboid family protein [Paenibacillus polymyxa SC2]
gi|343096441|emb|CCC84650.1| rhomboid protease gluP Intramembrane serine protease [Paenibacillus
polymyxa M1]
Length = 207
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 72/150 (48%), Gaps = 26/150 (17%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVS---WLI 192
+++V+A F HA ++HL N F + +F +E G+ L Y+ TG N +S + +
Sbjct: 62 WRYVSAMFLHAGFDHLLFNSFAILVFAPPLERLLGSLRYVLLYLVTGVVGNILSIAHYNM 121
Query: 193 LPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGT 252
+ + VSVGASGA++G++ + V + R +++ AS T
Sbjct: 122 VAETTVSVGASGAIYGIYGAFLYVALFQ--RSLMD----------------DASRKTLYT 163
Query: 253 FIG-----GYSVQSINHIAHLSGALFGVFL 277
+G ++V +IN AH G L G F+
Sbjct: 164 LLGFGILFSFAVANINWTAHFGGLLSGFFM 193
>gi|270291805|ref|ZP_06198021.1| rhomboid family protein [Streptococcus sp. M143]
gi|270279890|gb|EFA25731.1| rhomboid family protein [Streptococcus sp. M143]
Length = 226
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 81/184 (44%), Gaps = 22/184 (11%)
Query: 90 ERRKPKKS-----VNGVFWIILLNLGLYVADHVFQVRSIKSLY--LYHNFPA--WYQFVT 140
++R P S VF ++L+ G+ D V + ++Y + FP W F +
Sbjct: 6 DKRYPVTSFFLLVTALVFLLMLITTGINF-DQVKTLFQFGAMYGPIIRLFPEQIWRLF-S 63
Query: 141 AAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSV 200
A F H W H N+ LY G+ VEE G+ + YI +G N + PK ++
Sbjct: 64 AIFVHIGWEHFIVNMISLYFLGRQVEEIFGSRQFFFLYILSGMMGNLFVFAFTPK-VLAA 122
Query: 201 GASGAVFGLFAISVLVK----------MSWDWRKILEVLILGQFVVEKVMEAAQASAGMS 250
GAS +++GLFA ++++ + + + + I+G ++ + A +
Sbjct: 123 GASTSLYGLFAAIIVLRYATRNPYIQQLGQSYLTLFVINIIGSILIPGISLAGHIGGAVG 182
Query: 251 GTFI 254
G F+
Sbjct: 183 GAFL 186
>gi|84516036|ref|ZP_01003397.1| rhomboid family protein [Loktanella vestfoldensis SKA53]
gi|84510478|gb|EAQ06934.1| rhomboid family protein [Loktanella vestfoldensis SKA53]
Length = 245
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 138 FVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNA 197
VT+ F H + HL+ N+ FL+IFG +E+E G+ Y+ G A+ +L P +
Sbjct: 65 LVTSIFLHGGFMHLAGNMLFLWIFGDNLEDEMGHLPFLAFYLACGIGASLAQFLGDPTSQ 124
Query: 198 VS-VGASGAVFGLFA 211
V VGASGA+ G+
Sbjct: 125 VPMVGASGAIAGVMG 139
>gi|387786830|ref|YP_006251926.1| hypothetical protein SMULJ23_1649 [Streptococcus mutans LJ23]
gi|450125229|ref|ZP_21867568.1| hypothetical protein SMU86_01904 [Streptococcus mutans U2A]
gi|379133231|dbj|BAL69983.1| hypothetical protein SMULJ23_1649 [Streptococcus mutans LJ23]
gi|449232802|gb|EMC31899.1| hypothetical protein SMU86_01904 [Streptococcus mutans U2A]
Length = 223
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 130 HNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVS 189
HN ++ +T F H W H N LY G+L E G++ L Y+ +G N +
Sbjct: 51 HNPNQLWRLITPIFVHIGWEHFLFNSLALYFVGQLAENIWGSWRFLLLYLLSGIMGNIFT 110
Query: 190 WLILPKNAVSVGASGAVFGLFAISVLV 216
L L N V+ GAS ++FGLFA V++
Sbjct: 111 -LYLTPNVVAAGASTSLFGLFAAIVVL 136
>gi|348680946|gb|EGZ20762.1| hypothetical protein PHYSODRAFT_298749 [Phytophthora sojae]
Length = 267
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 71/149 (47%), Gaps = 22/149 (14%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGN---FGLWL-SYIFTGAAANFVSW 190
+Y +TA F A HL +N+ LY FG+ + + G+ GL+L S + + AAA F
Sbjct: 114 YYTLLTAMFSQATLGHLGANMLGLYFFGRQMCDVLGHRKFLGLYLASGVLSSAAAVFEQH 173
Query: 191 LILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMS 250
L + + ++GASGAV G+ A+S+L + G ++ ++ AG
Sbjct: 174 LS-GRLSYNLGASGAVNGITAMSIL------------LFPHGTLLIFGIVPMPAWLAGSL 220
Query: 251 GTFIGGYSV-----QSINHIAHLSGALFG 274
F YS I H+AHLSGA G
Sbjct: 221 FIFKDAYSFVTDRQDGIGHVAHLSGAFIG 249
>gi|417846854|ref|ZP_12492838.1| peptidase, S54 family [Streptococcus mitis SK1073]
gi|339457974|gb|EGP70527.1| peptidase, S54 family [Streptococcus mitis SK1073]
Length = 224
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 59/125 (47%), Gaps = 11/125 (8%)
Query: 140 TAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVS 199
+A F H W H N+ LY G+ VEE G+ + Y+ +G N ++ PK+ ++
Sbjct: 63 SAIFVHIGWEHFIVNMLSLYYLGRQVEEIFGSKQFFFLYLLSGMMGNLFVFVFSPKS-LA 121
Query: 200 VGASGAVFGLFAISVLVK----------MSWDWRKILEVLILGQFVVEKVMEAAQASAGM 249
GAS +++GLFA ++++ + + + V I+G ++ + A +
Sbjct: 122 AGASTSLYGLFAAIIVLRYATRNPYIQQLGQSYLTLFVVNIIGSVLIPGISLAGHIGGAV 181
Query: 250 SGTFI 254
G F+
Sbjct: 182 GGAFL 186
>gi|456864209|gb|EMF82623.1| peptidase, S54 family [Leptospira weilii serovar Topaz str. LT2116]
Length = 197
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 68/146 (46%), Gaps = 14/146 (9%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+Y +T+ F HA+W HL N+ Y FGK +E G L Y+ T + +SW
Sbjct: 40 YYTLLTSGFIHADWMHLIFNMISFYSFGKNLEITVGPIKFLLFYLGTILITSVISWRKNL 99
Query: 195 KNAV--SVGASGAVFGLFAISVLVKMSWD-WRKILEVLILGQF--VVEKVMEAAQASAGM 249
+N + ++GASG V G+ ++L + + + + I G V+ V + +G
Sbjct: 100 ENPLYATLGASGGVCGVLFATILFYPNLSLYMMFIPIPIPGSIYAVLYLVYTYFSSKSGH 159
Query: 250 SGTFIGGYSVQSINHIAHLSGALFGV 275
S INH AHL GAL G+
Sbjct: 160 S---------DGINHDAHLWGALCGI 176
>gi|385263137|ref|ZP_10041231.1| peptidase, S54 family [Streptococcus sp. SK643]
gi|385188675|gb|EIF36153.1| peptidase, S54 family [Streptococcus sp. SK643]
Length = 224
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 83/184 (45%), Gaps = 26/184 (14%)
Query: 101 VFWIILLNLG--LYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFL 158
VF ++LL G AD +F+ ++ S + ++ +A F H W H N+ L
Sbjct: 22 VFALMLLTTGGNFDRADTLFRFGAMYSPAIRLVPSQIWRLFSAIFVHIGWEHFIVNILSL 81
Query: 159 YIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFAISVLVKM 218
Y G+ VEE G+ + Y+ +G N + P+ A++ GAS +++GLFA ++++
Sbjct: 82 YFLGRQVEEIVGSKQFFFLYLLSGMMGNLFVFAYTPR-ALAAGASTSLYGLFAAIIVLRY 140
Query: 219 SWDWRKILEVLILGQ-----FVVEKVMEAAQASAGMSGTFIGGYSVQSINHIAHLSGALF 273
+ I + LGQ FVV IG + I+ H+ GA+
Sbjct: 141 ASRNPYIQQ---LGQSYMTLFVVN---------------LIGSILIPGISLAGHIGGAVG 182
Query: 274 GVFL 277
G FL
Sbjct: 183 GAFL 186
>gi|421742088|ref|ZP_16180236.1| putative membrane protein [Streptomyces sp. SM8]
gi|406689504|gb|EKC93377.1| putative membrane protein [Streptomyces sp. SM8]
Length = 299
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ +T+ F H + H +SN+ L+ G +E G Y+ +G A ++++I
Sbjct: 136 WYRLITSVFAHQEFLHFASNMLLLWWLGGPLEAALGRVRYLALYLISGLAGGALTYVIAA 195
Query: 195 KNAVSVGASGAVFGLFAISVLV--KMSWDWR 223
S+GASGAVFGL +V++ +++ D R
Sbjct: 196 PQQPSLGASGAVFGLMGATVVLMRRLNQDLR 226
>gi|386712717|ref|YP_006179039.1| S54 family peptidase [Halobacillus halophilus DSM 2266]
gi|384072272|emb|CCG43762.1| S54 family peptidase [Halobacillus halophilus DSM 2266]
Length = 256
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+++ VT F HA + H N F L +FG +E+ G F Y+F G N ++++ P
Sbjct: 59 YWRLVTPIFLHAGFAHALFNSFSLVLFGPALEQILGKFKFIFMYLFAGIVGNLGTFIVNP 118
Query: 195 KNAVS-VGASGAVFGLFAISVLVKM 218
+GASGA+FG+F + V + +
Sbjct: 119 DAYYQHLGASGAIFGIFGVYVFMVL 143
>gi|409997508|ref|YP_006751909.1| S54 family peptidase [Lactobacillus casei W56]
gi|406358520|emb|CCK22790.1| S54 family peptidase [Lactobacillus casei W56]
Length = 285
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 117 VFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWL 176
VF + L LY W++ +T F H H+ N F LY G++ E+ G++ +L
Sbjct: 102 VFYGARLNPLILYGQ---WWRLMTPVFVHIGLMHILVNGFSLYYLGQMTEQLFGHWRFFL 158
Query: 177 SYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVL 229
Y +G A N S+ P N ++ GAS A+FGL +++ S+ ++ L
Sbjct: 159 LYFISGFAGNVASFAFSP-NTLAAGASTAIFGLLGACLMLGDSFKENPVIRQL 210
>gi|359685351|ref|ZP_09255352.1| rhomboid family protein [Leptospira santarosai str. 2000030832]
gi|418753142|ref|ZP_13309395.1| peptidase, S54 family [Leptospira santarosai str. MOR084]
gi|421113637|ref|ZP_15574077.1| peptidase, S54 family [Leptospira santarosai str. JET]
gi|422002519|ref|ZP_16349756.1| rhomboid family protein [Leptospira santarosai serovar Shermani
str. LT 821]
gi|409966388|gb|EKO34232.1| peptidase, S54 family [Leptospira santarosai str. MOR084]
gi|410800924|gb|EKS07102.1| peptidase, S54 family [Leptospira santarosai str. JET]
gi|417259017|gb|EKT88402.1| rhomboid family protein [Leptospira santarosai serovar Shermani
str. LT 821]
Length = 272
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 86/187 (45%), Gaps = 26/187 (13%)
Query: 98 VNGVFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHA--NWNHLSSNL 155
+NG + + L L V D++ + S + H F W Q +T AF H+ N+ H+ N+
Sbjct: 22 LNGGIFAVQLLLSWTVGDYLTFYLGMTSDLVTHRFFVW-QLITYAFLHSVQNFFHILFNM 80
Query: 156 FFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP---KNAVSVGASGAVFGLFAI 212
F L++FG ++E G Y+F+ F W++ +GASG ++GL
Sbjct: 81 FSLWMFGSILENYWGGRNFLKFYLFSCFMGGFFPWILHNVGFHQGTIIGASGGIYGL--- 137
Query: 213 SVLVKMSWDWRKILEVLILGQFVVEK-----VMEAAQASAGMSGTFIGGYSVQSINHIAH 267
L+ + W E+L +G F ++ ++ A +G G +I H+AH
Sbjct: 138 --LIAFALIWPN-QELLFMGFFPLKAKYMVVILMLIIAFSGPGG---------NIAHMAH 185
Query: 268 LSGALFG 274
L GA+ G
Sbjct: 186 LGGAIGG 192
>gi|374609055|ref|ZP_09681852.1| Rhomboid family protein [Mycobacterium tusciae JS617]
gi|373552795|gb|EHP79398.1| Rhomboid family protein [Mycobacterium tusciae JS617]
Length = 282
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 53/99 (53%), Gaps = 2/99 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ +T+AF H H+ N++ LY+ G +E G Y + + + +L+
Sbjct: 108 WYRLLTSAFLHYGVTHILFNMWALYVVGPPLEAALGRLRFIGLYFTSALGGSVLVYLLSS 167
Query: 195 KNAVSVGASGAVFGLFAISVLV--KMSWDWRKILEVLIL 231
A + GASGA+FGLF + +V +++ D R ++ ++ L
Sbjct: 168 LGAQTAGASGAIFGLFGATFVVGKRLNLDVRWVIGLIAL 206
>gi|352518163|ref|YP_004887480.1| rhomboid family protein [Tetragenococcus halophilus NBRC 12172]
gi|348602270|dbj|BAK95316.1| rhomboid family protein [Tetragenococcus halophilus NBRC 12172]
Length = 228
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 51/99 (51%)
Query: 132 FPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWL 191
+ +++F+T F H H + N LY G+ +E G+ + Y+ +GAA N +S+
Sbjct: 51 YSQYWRFITPIFIHYGLMHFAVNSIVLYFMGQRLEAMYGHMRYFFIYLLSGAAGNLLSFA 110
Query: 192 ILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLI 230
S G+S A+FGLF V++ + + ++VL+
Sbjct: 111 FNSPGVQSAGSSTALFGLFGAFVVLGVHYKNNYAIQVLV 149
>gi|289662265|ref|ZP_06483846.1| hypothetical protein XcampvN_03998 [Xanthomonas campestris pv.
vasculorum NCPPB 702]
gi|289667632|ref|ZP_06488707.1| hypothetical protein XcampmN_03757 [Xanthomonas campestris pv.
musacearum NCPPB 4381]
gi|384417131|ref|YP_005626491.1| peptidase, S54 (rhomboid) family, putative [Xanthomonas oryzae pv.
oryzicola BLS256]
gi|353460045|gb|AEQ94324.1| peptidase, S54 (rhomboid) family, putative [Xanthomonas oryzae pv.
oryzicola BLS256]
Length = 230
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 137 QFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVS-WLILPK 195
+ TA F HA+W+HL NL FL IFG E G + L L ++ GAA+N + + I
Sbjct: 70 RLFTALFLHADWSHLLGNLVFLLIFGLPAERILGPWRLLLLFLVGGAASNLAAIFAIGTP 129
Query: 196 NAVSVGASGAV 206
+ V +GASGAV
Sbjct: 130 DRVIIGASGAV 140
>gi|24378820|ref|NP_720775.1| hypothetical protein SMU_321 [Streptococcus mutans UA159]
gi|397649056|ref|YP_006489583.1| hypothetical protein SMUGS5_01300 [Streptococcus mutans GS-5]
gi|449864854|ref|ZP_21778669.1| hypothetical protein SMU101_03504 [Streptococcus mutans U2B]
gi|449870069|ref|ZP_21780428.1| hypothetical protein SMU10_02537 [Streptococcus mutans 8ID3]
gi|449893179|ref|ZP_21788578.1| hypothetical protein SMU105_04914 [Streptococcus mutans SF12]
gi|449898520|ref|ZP_21790636.1| hypothetical protein SMU107_05595 [Streptococcus mutans R221]
gi|449984372|ref|ZP_21819026.1| hypothetical protein SMU52_02619 [Streptococcus mutans NFSM2]
gi|449997061|ref|ZP_21823794.1| hypothetical protein SMU54_06990 [Streptococcus mutans A9]
gi|450010468|ref|ZP_21828706.1| hypothetical protein SMU58_03256 [Streptococcus mutans A19]
gi|450024536|ref|ZP_21831296.1| hypothetical protein SMU60_06492 [Streptococcus mutans U138]
gi|450081251|ref|ZP_21851637.1| hypothetical protein SMU76_01339 [Streptococcus mutans N66]
gi|450115429|ref|ZP_21863938.1| hypothetical protein SMU83_03219 [Streptococcus mutans ST1]
gi|24376695|gb|AAN58081.1|AE014880_8 conserved hypothetical protein; possible membrane protein
[Streptococcus mutans UA159]
gi|392602625|gb|AFM80789.1| hypothetical protein SMUGS5_01300 [Streptococcus mutans GS-5]
gi|449157061|gb|EMB60511.1| hypothetical protein SMU10_02537 [Streptococcus mutans 8ID3]
gi|449180368|gb|EMB82531.1| hypothetical protein SMU52_02619 [Streptococcus mutans NFSM2]
gi|449182389|gb|EMB84414.1| hypothetical protein SMU54_06990 [Streptococcus mutans A9]
gi|449190190|gb|EMB91783.1| hypothetical protein SMU58_03256 [Streptococcus mutans A19]
gi|449191975|gb|EMB93423.1| hypothetical protein SMU60_06492 [Streptococcus mutans U138]
gi|449215489|gb|EMC15678.1| hypothetical protein SMU76_01339 [Streptococcus mutans N66]
gi|449228101|gb|EMC27488.1| hypothetical protein SMU83_03219 [Streptococcus mutans ST1]
gi|449255965|gb|EMC53801.1| hypothetical protein SMU105_04914 [Streptococcus mutans SF12]
gi|449259556|gb|EMC57080.1| hypothetical protein SMU107_05595 [Streptococcus mutans R221]
gi|449264658|gb|EMC61995.1| hypothetical protein SMU101_03504 [Streptococcus mutans U2B]
Length = 223
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 130 HNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVS 189
HN ++ +T F H W H N LY G+L E G++ L Y+ +G N +
Sbjct: 51 HNPNQLWRLITPIFVHIGWEHFLFNSLALYFVGQLAENIWGSWRFLLLYLLSGIMGNIFT 110
Query: 190 WLILPKNAVSVGASGAVFGLFAISVLV 216
L L N V+ GAS ++FGLFA V++
Sbjct: 111 -LYLTPNVVAAGASTSLFGLFAAIVVL 136
>gi|291452621|ref|ZP_06592011.1| conserved hypothetical protein [Streptomyces albus J1074]
gi|291355570|gb|EFE82472.1| conserved hypothetical protein [Streptomyces albus J1074]
Length = 299
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ +T+ F H + H +SN+ L+ G +E G Y+ +G A ++++I
Sbjct: 136 WYRLITSVFAHQEFLHFASNMLLLWWLGGPLEAALGRVRYLALYLISGLAGGALTYVIAA 195
Query: 195 KNAVSVGASGAVFGLFAISVLV--KMSWDWR 223
S+GASGAVFGL +V++ +++ D R
Sbjct: 196 PQQPSLGASGAVFGLMGATVVLMRRLNQDLR 226
>gi|290581154|ref|YP_003485546.1| hypothetical protein SmuNN2025_1628 [Streptococcus mutans NN2025]
gi|449877563|ref|ZP_21783289.1| hypothetical protein SMU102_07515 [Streptococcus mutans S1B]
gi|449887799|ref|ZP_21787051.1| hypothetical protein SMU104_06956 [Streptococcus mutans SA41]
gi|449902657|ref|ZP_21791666.1| hypothetical protein SMU108_00772 [Streptococcus mutans M230]
gi|449909446|ref|ZP_21794268.1| hypothetical protein SMU109_04325 [Streptococcus mutans OMZ175]
gi|449915780|ref|ZP_21796496.1| hypothetical protein SMU20_05642 [Streptococcus mutans 15JP3]
gi|449926163|ref|ZP_21800635.1| hypothetical protein SMU22_07044 [Streptococcus mutans 4SM1]
gi|449932997|ref|ZP_21803067.1| hypothetical protein SMU26_09769 [Streptococcus mutans 3SN1]
gi|449935628|ref|ZP_21803483.1| hypothetical protein SMU29_01492 [Streptococcus mutans 2ST1]
gi|449953993|ref|ZP_21809189.1| hypothetical protein SMU36_01160 [Streptococcus mutans 4VF1]
gi|449969682|ref|ZP_21813374.1| hypothetical protein SMU41_02896 [Streptococcus mutans 2VS1]
gi|449975392|ref|ZP_21815774.1| hypothetical protein SMU44_05271 [Streptococcus mutans 11VS1]
gi|449981483|ref|ZP_21817821.1| hypothetical protein SMU50_06224 [Streptococcus mutans 5SM3]
gi|449991582|ref|ZP_21821912.1| hypothetical protein SMU53_07300 [Streptococcus mutans NVAB]
gi|450000808|ref|ZP_21825387.1| hypothetical protein SMU56_05668 [Streptococcus mutans N29]
gi|450006997|ref|ZP_21827532.1| hypothetical protein SMU57_06793 [Streptococcus mutans NMT4863]
gi|450030366|ref|ZP_21833156.1| hypothetical protein SMU61_05927 [Streptococcus mutans G123]
gi|450039682|ref|ZP_21836310.1| hypothetical protein SMU63_02252 [Streptococcus mutans T4]
gi|450045172|ref|ZP_21838294.1| hypothetical protein SMU66_02488 [Streptococcus mutans N34]
gi|450057294|ref|ZP_21842487.1| hypothetical protein SMU69_03856 [Streptococcus mutans NLML4]
gi|450066560|ref|ZP_21846043.1| hypothetical protein SMU72_02544 [Streptococcus mutans NLML9]
gi|450070642|ref|ZP_21847699.1| hypothetical protein SMU74_00917 [Streptococcus mutans M2A]
gi|450078107|ref|ZP_21850812.1| hypothetical protein SMU75_06874 [Streptococcus mutans N3209]
gi|450087216|ref|ZP_21854114.1| hypothetical protein SMU77_03706 [Streptococcus mutans NV1996]
gi|450092941|ref|ZP_21856354.1| hypothetical protein SMU78_04955 [Streptococcus mutans W6]
gi|450105688|ref|ZP_21860025.1| hypothetical protein SMU81_02896 [Streptococcus mutans SF14]
gi|450109793|ref|ZP_21861700.1| hypothetical protein SMU82_01692 [Streptococcus mutans SM6]
gi|450122282|ref|ZP_21866699.1| hypothetical protein SMU85_07247 [Streptococcus mutans ST6]
gi|450133701|ref|ZP_21870754.1| hypothetical protein SMU88_07487 [Streptococcus mutans NLML8]
gi|450139491|ref|ZP_21872551.1| hypothetical protein SMU89_06809 [Streptococcus mutans NLML1]
gi|450155757|ref|ZP_21878464.1| hypothetical protein SMU93_07797 [Streptococcus mutans 21]
gi|450165015|ref|ZP_21881658.1| hypothetical protein SMU95_04358 [Streptococcus mutans B]
gi|450177595|ref|ZP_21886477.1| hypothetical protein SMU98_09015 [Streptococcus mutans SM1]
gi|450179789|ref|ZP_21886796.1| hypothetical protein SMU99_00690 [Streptococcus mutans 24]
gi|254998053|dbj|BAH88654.1| conserved hypothetical protein [Streptococcus mutans NN2025]
gi|449150716|gb|EMB54473.1| hypothetical protein SMU88_07487 [Streptococcus mutans NLML8]
gi|449156106|gb|EMB59590.1| hypothetical protein SMU20_05642 [Streptococcus mutans 15JP3]
gi|449160673|gb|EMB63920.1| hypothetical protein SMU26_09769 [Streptococcus mutans 3SN1]
gi|449160940|gb|EMB64170.1| hypothetical protein SMU22_07044 [Streptococcus mutans 4SM1]
gi|449166297|gb|EMB69241.1| hypothetical protein SMU29_01492 [Streptococcus mutans 2ST1]
gi|449171291|gb|EMB73958.1| hypothetical protein SMU36_01160 [Streptococcus mutans 4VF1]
gi|449174016|gb|EMB76538.1| hypothetical protein SMU41_02896 [Streptococcus mutans 2VS1]
gi|449175774|gb|EMB78162.1| hypothetical protein SMU50_06224 [Streptococcus mutans 5SM3]
gi|449176953|gb|EMB79275.1| hypothetical protein SMU44_05271 [Streptococcus mutans 11VS1]
gi|449180859|gb|EMB82992.1| hypothetical protein SMU53_07300 [Streptococcus mutans NVAB]
gi|449185350|gb|EMB87238.1| hypothetical protein SMU56_05668 [Streptococcus mutans N29]
gi|449186942|gb|EMB88746.1| hypothetical protein SMU57_06793 [Streptococcus mutans NMT4863]
gi|449192809|gb|EMB94212.1| hypothetical protein SMU61_05927 [Streptococcus mutans G123]
gi|449200024|gb|EMC01071.1| hypothetical protein SMU63_02252 [Streptococcus mutans T4]
gi|449200652|gb|EMC01674.1| hypothetical protein SMU66_02488 [Streptococcus mutans N34]
gi|449205366|gb|EMC06114.1| hypothetical protein SMU69_03856 [Streptococcus mutans NLML4]
gi|449208851|gb|EMC09414.1| hypothetical protein SMU72_02544 [Streptococcus mutans NLML9]
gi|449210329|gb|EMC10793.1| hypothetical protein SMU75_06874 [Streptococcus mutans N3209]
gi|449213743|gb|EMC14072.1| hypothetical protein SMU74_00917 [Streptococcus mutans M2A]
gi|449217732|gb|EMC17767.1| hypothetical protein SMU78_04955 [Streptococcus mutans W6]
gi|449218258|gb|EMC18273.1| hypothetical protein SMU77_03706 [Streptococcus mutans NV1996]
gi|449224087|gb|EMC23739.1| hypothetical protein SMU81_02896 [Streptococcus mutans SF14]
gi|449225887|gb|EMC25460.1| hypothetical protein SMU82_01692 [Streptococcus mutans SM6]
gi|449228122|gb|EMC27506.1| hypothetical protein SMU85_07247 [Streptococcus mutans ST6]
gi|449232867|gb|EMC31959.1| hypothetical protein SMU89_06809 [Streptococcus mutans NLML1]
gi|449236819|gb|EMC35719.1| hypothetical protein SMU93_07797 [Streptococcus mutans 21]
gi|449241130|gb|EMC39775.1| hypothetical protein SMU95_04358 [Streptococcus mutans B]
gi|449243478|gb|EMC41902.1| hypothetical protein SMU98_09015 [Streptococcus mutans SM1]
gi|449248728|gb|EMC46953.1| hypothetical protein SMU99_00690 [Streptococcus mutans 24]
gi|449250800|gb|EMC48846.1| hypothetical protein SMU102_07515 [Streptococcus mutans S1B]
gi|449252187|gb|EMC50174.1| hypothetical protein SMU104_06956 [Streptococcus mutans SA41]
gi|449261387|gb|EMC58864.1| hypothetical protein SMU109_04325 [Streptococcus mutans OMZ175]
gi|449262209|gb|EMC59664.1| hypothetical protein SMU108_00772 [Streptococcus mutans M230]
Length = 223
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 117 VFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWL 176
VF + + HN ++ +T F H W H N LY G+L E G++ L
Sbjct: 38 VFNFGGMYGDLVVHNPNQLWRLITPIFVHIGWEHFLFNSLALYFVGQLAENIWGSWRFLL 97
Query: 177 SYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFAISVLV 216
Y+ +G N + L L N V+ GAS ++FGLFA V++
Sbjct: 98 LYLLSGIMGNIFT-LYLTPNVVAAGASTSLFGLFAAIVVL 136
>gi|170761626|ref|YP_001785737.1| membrane associated peptidase [Clostridium botulinum A3 str. Loch
Maree]
gi|169408615|gb|ACA57026.1| putative membrane associated peptidase [Clostridium botulinum A3
str. Loch Maree]
Length = 341
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 52/94 (55%), Gaps = 4/94 (4%)
Query: 131 NFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSW 190
N +Y+ +TA F H HL+ N++ L G LVE G + Y +G +++ S+
Sbjct: 198 NNGEYYRLITAMFLHGGLIHLALNMYALNAIGPLVEIYFGKVKYLIIYFISGILSSYFSY 257
Query: 191 LILPKNAVSVGASGAVFGLFAISVLVKMSWDWRK 224
L +VS+GASGA+FG+ ++++ ++ RK
Sbjct: 258 LFSA--SVSIGASGAIFGILGATLII--AYTNRK 287
>gi|199597186|ref|ZP_03210618.1| Membrane-associated serine protease [Lactobacillus rhamnosus HN001]
gi|258508700|ref|YP_003171451.1| membrane-associated serine protease [Lactobacillus rhamnosus GG]
gi|385828361|ref|YP_005866133.1| hypothetical protein [Lactobacillus rhamnosus GG]
gi|199591990|gb|EDZ00065.1| Membrane-associated serine protease [Lactobacillus rhamnosus HN001]
gi|257148627|emb|CAR87600.1| Membrane-associated serine protease [Lactobacillus rhamnosus GG]
gi|259650006|dbj|BAI42168.1| conserved hypothetical protein [Lactobacillus rhamnosus GG]
Length = 229
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 2/112 (1%)
Query: 132 FPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWL 191
+ W++ +T F H H+ N F LY G++ E G++ +L Y G A N S+
Sbjct: 56 YGQWWRLITPVFVHIGLTHILMNGFSLYFLGQMTERLFGHWRFFLLYFIAGFAGNVASFA 115
Query: 192 ILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAA 243
P N ++ GAS A+FGL +++ ++ ++ L QF++ V+ A
Sbjct: 116 FSP-NTLAAGASTAIFGLLGACLMLGDTYRENPVIRQLAR-QFLLLVVLNLA 165
>gi|116495142|ref|YP_806876.1| membrane-associated serine protease [Lactobacillus casei ATCC 334]
gi|239632021|ref|ZP_04675052.1| membrane-associated serine protease [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|301066706|ref|YP_003788729.1| membrane-associated serine protease [Lactobacillus casei str.
Zhang]
gi|417980317|ref|ZP_12620997.1| GlpG family membrane protein [Lactobacillus casei 12A]
gi|417989935|ref|ZP_12630432.1| GlpG family membrane protein [Lactobacillus casei A2-362]
gi|417993182|ref|ZP_12633532.1| GlpG family membrane protein [Lactobacillus casei CRF28]
gi|417996528|ref|ZP_12636807.1| GlpG family membrane protein [Lactobacillus casei M36]
gi|417999394|ref|ZP_12639604.1| GlpG family membrane protein [Lactobacillus casei T71499]
gi|418002337|ref|ZP_12642457.1| GlpG family membrane protein [Lactobacillus casei UCD174]
gi|418008258|ref|ZP_12648126.1| GlpG family membrane protein [Lactobacillus casei UW4]
gi|418013147|ref|ZP_12652800.1| GlpG family membrane protein [Lactobacillus casei Lpc-37]
gi|116105292|gb|ABJ70434.1| Membrane-associated serine protease [Lactobacillus casei ATCC 334]
gi|239526486|gb|EEQ65487.1| membrane-associated serine protease [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|300439113|gb|ADK18879.1| Membrane-associated serine protease [Lactobacillus casei str.
Zhang]
gi|410524640|gb|EKP99547.1| GlpG family membrane protein [Lactobacillus casei 12A]
gi|410532094|gb|EKQ06805.1| GlpG family membrane protein [Lactobacillus casei CRF28]
gi|410535374|gb|EKQ09999.1| GlpG family membrane protein [Lactobacillus casei M36]
gi|410536930|gb|EKQ11516.1| GlpG family membrane protein [Lactobacillus casei A2-362]
gi|410539414|gb|EKQ13947.1| GlpG family membrane protein [Lactobacillus casei T71499]
gi|410544317|gb|EKQ18647.1| GlpG family membrane protein [Lactobacillus casei UCD174]
gi|410547202|gb|EKQ21440.1| GlpG family membrane protein [Lactobacillus casei UW4]
gi|410556094|gb|EKQ30016.1| GlpG family membrane protein [Lactobacillus casei Lpc-37]
Length = 227
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 117 VFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWL 176
VF + L LY W++ +T F H H+ N F LY G++ E+ G++ +L
Sbjct: 44 VFYGARLNPLILYGQ---WWRLMTPVFVHIGLMHILVNGFSLYYLGQMTEQLFGHWRFFL 100
Query: 177 SYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVL 229
Y +G A N S+ P N ++ GAS A+FGL +++ S+ ++ L
Sbjct: 101 LYFISGFAGNVASFAFSP-NTLAAGASTAIFGLLGACLMLGDSFKENPVIRQL 152
>gi|292492947|ref|YP_003528386.1| rhomboid family protein [Nitrosococcus halophilus Nc4]
gi|291581542|gb|ADE15999.1| Rhomboid family protein [Nitrosococcus halophilus Nc4]
Length = 227
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 63/144 (43%), Gaps = 20/144 (13%)
Query: 133 PAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLI 192
P T+ F H ++ HL N+ +L++FG VE+ G + Y+ GAAA I
Sbjct: 66 PPVLSLFTSMFLHGSFMHLLGNMLYLHVFGNNVEDSMGRGRFIVFYLLCGAAAALSQIFI 125
Query: 193 LPKNAVS-VGASGAVFGLFAISVL------VKM-------------SWDWRKILEVLILG 232
P + + VGASGA+ G+ +L +KM +W I + L
Sbjct: 126 APSSTIPMVGASGAISGILGAYLLLHPFAQIKMLVPYFILFFVWVPAWLMLGIWFLFQLL 185
Query: 233 QFVVEKVMEAAQASAGMSGTFIGG 256
Q VV +A A A +G F+ G
Sbjct: 186 QSVVTPSDQAGIAFAAHAGGFVAG 209
>gi|440793889|gb|ELR15060.1| peptidase, S54 family protein [Acanthamoeba castellanii str. Neff]
Length = 434
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 71/142 (50%), Gaps = 18/142 (12%)
Query: 136 YQFVTAAFCHANWNHLSSNLFF-LYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
++F T F HA HL+ NL F L F ++E + G + L YI +G N S L LP
Sbjct: 237 WRFFTPIFLHAGLIHLALNLIFQLQCF--MLERQMGFVRVGLVYIVSGFGGNLASSLFLP 294
Query: 195 KNAVSVGASGAVFGLFA-ISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTF 253
+ +SVGASGA+FGL I V++ +W L V VV +M A G+
Sbjct: 295 R-LISVGASGALFGLVGMIFVVIFRNWS----LVVSPCRNLVVLCIMVAISLFLGL---- 345
Query: 254 IGGYSVQSINHIAHLSGALFGV 275
+ ++++ AH+ G + G+
Sbjct: 346 -----LPNVDNFAHVGGLVTGL 362
>gi|402770952|ref|YP_006590489.1| hypothetical protein BN69_0387 [Methylocystis sp. SC2]
gi|401772972|emb|CCJ05838.1| Conserved hypothetical protein [Methylocystis sp. SC2]
Length = 496
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAA--ANFVSWLI 192
W + +A HA++ HL N L+I G E G+ W +F G+A + +S
Sbjct: 270 WLRIFSAPLLHASFEHLLLNCIALWIVGVRFERYVGSG--WFGAVFAGSAIAGSLMSLAF 327
Query: 193 LPKNAVSVGASGAVFGLFAISVL 215
P N VSVGASG + GLFA + L
Sbjct: 328 NPPNLVSVGASGGIVGLFAATAL 350
>gi|356545710|ref|XP_003541279.1| PREDICTED: uncharacterized protein LOC100808799 [Glycine max]
Length = 503
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ VT F HA H++ + + L FG V + G+F +L YI G A NF+S+L P
Sbjct: 296 WWRLVTPMFLHAGIFHMAVSCWALLTFGPQVCKGYGSFTFFLIYILGGVACNFISFLHTP 355
Query: 195 KNAVSVGASGAVFGLFA 211
+VG +G VF +
Sbjct: 356 D--PTVGGTGPVFAIIG 370
>gi|456886946|gb|EMF98050.1| peptidase, S54 family [Leptospira borgpetersenii str. 200701203]
Length = 203
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
Query: 139 VTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGA-----AANFVSWLIL 193
+ A F H + HLS N+F+L+ G+ VE + G G WL + F A +F+ +IL
Sbjct: 34 IGAVFYHGSLIHLSGNMFYLFFLGRAVEYKAGK-GRWLLFFFMAALISSLLDSFIRGVIL 92
Query: 194 PKNAVSVGASGAVFGLFAISVLVK 217
+ VGASGA+ G+ A++ L+
Sbjct: 93 HDSTPVVGASGAISGIAAVAALLS 116
>gi|449918925|ref|ZP_21797636.1| hypothetical protein SMU21_01730 [Streptococcus mutans 1SM1]
gi|449159911|gb|EMB63210.1| hypothetical protein SMU21_01730 [Streptococcus mutans 1SM1]
Length = 223
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 117 VFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWL 176
VF + + HN ++ +T F H W H N LY G+L E G++ L
Sbjct: 38 VFNFGGMYGDLVVHNPNQLWRLITPIFVHIGWEHFLFNSLALYFVGQLAENIWGSWRFLL 97
Query: 177 SYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFAISVLV 216
Y+ +G N + L L N V+ GAS ++FGLFA V++
Sbjct: 98 LYLLSGIMGNIFT-LYLTPNVVAAGASTSLFGLFAAIVVL 136
>gi|191638648|ref|YP_001987814.1| S54 family peptidase [Lactobacillus casei BL23]
gi|385820364|ref|YP_005856751.1| substrate carrier family protein [Lactobacillus casei LC2W]
gi|418005386|ref|ZP_12645379.1| GlpG family membrane protein [Lactobacillus casei UW1]
gi|190712950|emb|CAQ66956.1| S54 family peptidase [Lactobacillus casei BL23]
gi|327382691|gb|AEA54167.1| substrate carrier family protein [Lactobacillus casei LC2W]
gi|410546783|gb|EKQ21027.1| GlpG family membrane protein [Lactobacillus casei UW1]
Length = 227
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 117 VFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWL 176
VF + L LY W++ +T F H H+ N F LY G++ E+ G++ +L
Sbjct: 44 VFYGARLNPLILYGQ---WWRLMTPVFVHIGLMHILVNGFSLYYLGQMTEQLFGHWRFFL 100
Query: 177 SYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVL 229
Y +G A N S+ P N ++ GAS A+FGL +++ S+ ++ L
Sbjct: 101 LYFISGFAGNVASFAFSP-NTLAAGASTAIFGLLGACLMLGDSFKENPVIRQL 152
>gi|450063127|ref|ZP_21844751.1| hypothetical protein SMU70_05561 [Streptococcus mutans NLML5]
gi|450101446|ref|ZP_21859070.1| hypothetical protein SMU80_08685 [Streptococcus mutans SF1]
gi|450144190|ref|ZP_21873878.1| hypothetical protein SMU9_03694 [Streptococcus mutans 1ID3]
gi|450161127|ref|ZP_21880393.1| hypothetical protein SMU94_07578 [Streptococcus mutans 66-2A]
gi|450171242|ref|ZP_21883901.1| hypothetical protein SMU97_05961 [Streptococcus mutans SM4]
gi|449150902|gb|EMB54650.1| hypothetical protein SMU9_03694 [Streptococcus mutans 1ID3]
gi|449205075|gb|EMC05842.1| hypothetical protein SMU70_05561 [Streptococcus mutans NLML5]
gi|449220060|gb|EMC19986.1| hypothetical protein SMU80_08685 [Streptococcus mutans SF1]
gi|449239212|gb|EMC37941.1| hypothetical protein SMU94_07578 [Streptococcus mutans 66-2A]
gi|449244337|gb|EMC42716.1| hypothetical protein SMU97_05961 [Streptococcus mutans SM4]
Length = 223
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 117 VFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWL 176
VF + + HN ++ +T F H W H N LY G+L E G++ L
Sbjct: 38 VFNFGGMYGDLVVHNPNQLWRLITPIFVHIGWEHFLFNSLALYFVGQLAENIWGSWRFLL 97
Query: 177 SYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFAISVLV 216
Y+ +G N + L L N V+ GAS ++FGLFA V++
Sbjct: 98 LYLLSGIMGNIFT-LYLTPNVVAAGASTSLFGLFAAIVVL 136
>gi|407800065|ref|ZP_11146933.1| rhomboid family protein [Oceaniovalibus guishaninsula JLT2003]
gi|407058057|gb|EKE44025.1| rhomboid family protein [Oceaniovalibus guishaninsula JLT2003]
Length = 242
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 62/129 (48%), Gaps = 13/129 (10%)
Query: 137 QFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKN 196
++T+ F H + HL+ N+ FL++FG +E+E G+ Y+ G AA L P +
Sbjct: 59 TYITSQFLHGGFMHLAGNMLFLWVFGDNLEDEMGHLPFLGFYLLGGIAAALAQTLSDPAS 118
Query: 197 AVS-VGASGAVFGLFA----------ISVLVKMSWDWR--KILEVLILGQFVVEKVMEAA 243
+ VGASGA+ G+ + VL+ +R I ++LG + ++ A
Sbjct: 119 PIPMVGASGAIAGVMGGYLLMFPRARVDVLIIFIVFFRVIPIPAWIVLGVWFGIQIFSGA 178
Query: 244 QASAGMSGT 252
A AG+ G
Sbjct: 179 SAPAGVGGV 187
>gi|21240794|ref|NP_640376.1| hypothetical protein XAC0020 [Xanthomonas axonopodis pv. citri str.
306]
gi|78045577|ref|YP_361752.1| rhomboid family membrane protein [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|294627419|ref|ZP_06706003.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|294665519|ref|ZP_06730802.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|346722962|ref|YP_004849631.1| Long-chain fatty acid transport protein [Xanthomonas axonopodis pv.
citrumelo F1]
gi|381169623|ref|ZP_09878787.1| rhomboid family protein [Xanthomonas citri pv. mangiferaeindicae
LMG 941]
gi|390990421|ref|ZP_10260707.1| rhomboid family protein [Xanthomonas axonopodis pv. punicae str.
LMG 859]
gi|418516117|ref|ZP_13082293.1| Long-chain fatty acid transport protein [Xanthomonas axonopodis pv.
malvacearum str. GSPB1386]
gi|418521951|ref|ZP_13087991.1| Long-chain fatty acid transport protein [Xanthomonas axonopodis pv.
malvacearum str. GSPB2388]
gi|21106060|gb|AAM34912.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
str. 306]
gi|78034007|emb|CAJ21652.1| putative rhomboid family membrane protein [Xanthomonas campestris
pv. vesicatoria str. 85-10]
gi|292598240|gb|EFF42393.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292604722|gb|EFF48090.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|346647709|gb|AEO40333.1| Long-chain fatty acid transport protein [Xanthomonas axonopodis pv.
citrumelo F1]
gi|372554867|emb|CCF67682.1| rhomboid family protein [Xanthomonas axonopodis pv. punicae str.
LMG 859]
gi|380689911|emb|CCG35274.1| rhomboid family protein [Xanthomonas citri pv. mangiferaeindicae
LMG 941]
gi|410701880|gb|EKQ60395.1| Long-chain fatty acid transport protein [Xanthomonas axonopodis pv.
malvacearum str. GSPB2388]
gi|410707180|gb|EKQ65634.1| Long-chain fatty acid transport protein [Xanthomonas axonopodis pv.
malvacearum str. GSPB1386]
Length = 230
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 137 QFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVS-WLILPK 195
+ TA F HA+W+HL NL FL IFG E G + L L ++ GAA+N + + I
Sbjct: 70 RLFTALFLHADWSHLLGNLVFLLIFGLPAERILGPWRLLLLFLVGGAASNLAAIFAIGTP 129
Query: 196 NAVSVGASGAV 206
+ V +GASGAV
Sbjct: 130 DRVIIGASGAV 140
>gi|449941003|ref|ZP_21805316.1| hypothetical protein SMU3_00950 [Streptococcus mutans 11A1]
gi|449152512|gb|EMB56217.1| hypothetical protein SMU3_00950 [Streptococcus mutans 11A1]
Length = 223
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 117 VFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWL 176
VF + + HN ++ +T F H W H N LY G+L E G++ L
Sbjct: 38 VFNFGGMYGDLVVHNPNQLWRLITPIFVHIGWEHFLFNSLALYFVGQLAENIWGSWRFLL 97
Query: 177 SYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFAISVLV 216
Y+ +G N + L L N V+ GAS ++FGLFA V++
Sbjct: 98 LYLLSGIMGNIFT-LYLTPNVVAAGASTSLFGLFAAIVVL 136
>gi|168181264|ref|ZP_02615928.1| peptidase, S54 family [Clostridium botulinum Bf]
gi|237793720|ref|YP_002861272.1| putative membrane associated peptidase [Clostridium botulinum Ba4
str. 657]
gi|182675329|gb|EDT87290.1| peptidase, S54 family [Clostridium botulinum Bf]
gi|229262482|gb|ACQ53515.1| putative membrane associated peptidase [Clostridium botulinum Ba4
str. 657]
Length = 342
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 52/94 (55%), Gaps = 4/94 (4%)
Query: 131 NFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSW 190
N +Y+ +TA F H HL+ N++ L G LVE G + Y +G +++ S+
Sbjct: 198 NNGEYYRLITAMFLHGGLIHLALNMYALNAIGPLVEIYFGKVKYLIIYFISGILSSYFSY 257
Query: 191 LILPKNAVSVGASGAVFGLFAISVLVKMSWDWRK 224
L +VS+GASGA+FG+ ++++ ++ RK
Sbjct: 258 LFSA--SVSIGASGAIFGILGATLII--AYTNRK 287
>gi|456874276|gb|EMF89579.1| peptidase, S54 family [Leptospira santarosai str. ST188]
Length = 272
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 86/187 (45%), Gaps = 26/187 (13%)
Query: 98 VNGVFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHA--NWNHLSSNL 155
+NG + + L L V D++ + S + H F W Q +T AF H+ N+ H+ N+
Sbjct: 22 LNGGIFAVQLLLSWTVGDYLTFYLGMTSDLVTHRFFVW-QLITYAFLHSVQNFFHILFNM 80
Query: 156 FFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP---KNAVSVGASGAVFGLFAI 212
F L++FG ++E G Y+F+ F W++ +GASG ++GL
Sbjct: 81 FSLWMFGSILENYWGGRNFLKFYLFSCFMGGFFPWILHNVGFHQGTIIGASGGIYGL--- 137
Query: 213 SVLVKMSWDWRKILEVLILGQFVVEK-----VMEAAQASAGMSGTFIGGYSVQSINHIAH 267
L+ + W E+L +G F ++ ++ A +G G +I H+AH
Sbjct: 138 --LIAFALIWPN-QELLFMGFFPLKAKYMVVILMLIIALSGPGG---------NIAHMAH 185
Query: 268 LSGALFG 274
L GA+ G
Sbjct: 186 LGGAIGG 192
>gi|433460288|ref|ZP_20417921.1| S54 family peptidase [Halobacillus sp. BAB-2008]
gi|432191744|gb|ELK48676.1| S54 family peptidase [Halobacillus sp. BAB-2008]
Length = 253
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+++ VT F HA + H N F L +FG +E+ G Y+F G A N ++++ P
Sbjct: 59 YWRLVTPIFLHAGFAHALFNSFSLVLFGPALEQMLGKVKFIALYLFAGIAGNVGTFIVDP 118
Query: 195 KNAVS-VGASGAVFGLFAISVLVKMSWDWRKILE 227
+ +GASGA+FG+F + + M W+ + +++
Sbjct: 119 SAYYAHLGASGAIFGIFGVYIF--MVWNRKHLID 150
>gi|417983680|ref|ZP_12624316.1| GlpG family membrane protein [Lactobacillus casei 21/1]
gi|410527949|gb|EKQ02811.1| GlpG family membrane protein [Lactobacillus casei 21/1]
Length = 227
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 117 VFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWL 176
VF + L LY W++ +T F H H+ N F LY G++ E+ G++ +L
Sbjct: 44 VFYGARLNPLILYGQ---WWRLMTPVFVHIGLMHILVNGFSLYYLGQMTEQLFGHWRFFL 100
Query: 177 SYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVL 229
Y +G A N S+ P N ++ GAS A+FGL +++ S+ ++ L
Sbjct: 101 LYFISGFAGNVASFAFSP-NTLAAGASTAIFGLLGACLMLGDSFKENPVIRQL 152
>gi|398330785|ref|ZP_10515490.1| intramembrane protease [Leptospira alexanderi serovar Manhao 3 str.
L 60]
Length = 197
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 67/145 (46%), Gaps = 12/145 (8%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+Y +T+ F HA+W HL N+ Y FGK +E G L Y+ T + +SW
Sbjct: 40 YYTLLTSGFIHADWMHLIFNMISFYSFGKNLEITVGPIKFLLFYLGTILITSVISWRKNL 99
Query: 195 KNAV--SVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGT 252
+N + ++GASG V G+ ++L + + F+ + A A + T
Sbjct: 100 ENPLYATLGASGGVCGVLFATILFYPNLS--------LYMMFIPIPIPGAIYAVLYLVYT 151
Query: 253 FIGGYSVQS--INHIAHLSGALFGV 275
+ S S INH AHL GAL G+
Sbjct: 152 YFSSKSGHSDGINHDAHLWGALCGI 176
>gi|417794700|ref|ZP_12441942.1| peptidase, S54 family [Streptococcus oralis SK255]
gi|334267847|gb|EGL86299.1| peptidase, S54 family [Streptococcus oralis SK255]
Length = 226
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 11/125 (8%)
Query: 140 TAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVS 199
+A F H W H N+ LY G+ VEE G+ + Y+ +G N + PK V+
Sbjct: 63 SAIFVHIGWEHFIVNMISLYFLGRQVEEIFGSKKFFFLYLLSGMMGNLFVFAFTPK-VVA 121
Query: 200 VGASGAVFGLFAISVLVK----------MSWDWRKILEVLILGQFVVEKVMEAAQASAGM 249
GAS +++GLFA ++++ + + + + I+G ++ + A +
Sbjct: 122 AGASTSLYGLFAAIIVLRYATRNPYIQQLGQSYLTLFVINIIGSILIPGISLAGHIGGAV 181
Query: 250 SGTFI 254
G F+
Sbjct: 182 GGAFL 186
>gi|332981229|ref|YP_004462670.1| rhomboid family protein [Mahella australiensis 50-1 BON]
gi|332698907|gb|AEE95848.1| Rhomboid family protein [Mahella australiensis 50-1 BON]
Length = 231
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 74/160 (46%), Gaps = 19/160 (11%)
Query: 130 HNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVS 189
+N A+ T+ F H NW H+ SN++ L++FG VE++ G + YI G A
Sbjct: 58 NNPAAYIPLFTSMFMHGNWMHIISNMWSLWLFGDNVEDKMGAIRFLIFYILCGLIAGLAH 117
Query: 190 WLILPKNAV-SVGASGAVFGLF-AISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQA-- 245
+L P + V ++GASGA+ G+ A VL S ++ L F++ + A
Sbjct: 118 FLSGPNSTVPTLGASGAIAGVMGAYFVLFPHS-------RIITLIPFIIPFFIYVPSAVF 170
Query: 246 ------SAGMSGTF--IGGYSVQSINHIAHLSGALFGVFL 277
S SG I G +V + AH+ G L GV L
Sbjct: 171 LFVWFISQLYSGIIEGIAGRAVGGVAWWAHIFGFLGGVLL 210
>gi|188579201|ref|YP_001916130.1| peptidase, S54 (rhomboid) family [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|188523653|gb|ACD61598.1| peptidase, S54 (rhomboid) family [Xanthomonas oryzae pv. oryzae
PXO99A]
Length = 214
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 137 QFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVS-WLILPK 195
+ TA F HA+W+HL NL FL IFG E G + L L ++ GAA+N + + I
Sbjct: 54 RLFTALFLHADWSHLLGNLMFLLIFGLPAERILGPWRLLLLFLVGGAASNLAAIFAIGTP 113
Query: 196 NAVSVGASGAV 206
+ V +GASGAV
Sbjct: 114 DRVIIGASGAV 124
>gi|443475962|ref|ZP_21065890.1| Peptidase S54, rhomboid domain [Pseudanabaena biceps PCC 7429]
gi|443019115|gb|ELS33256.1| Peptidase S54, rhomboid domain [Pseudanabaena biceps PCC 7429]
Length = 217
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 75/147 (51%), Gaps = 19/147 (12%)
Query: 139 VTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAV 198
+++ F H + HL N++FLY+FG +E+ G++ Y+ G A + P + V
Sbjct: 65 LSSQFLHGSIFHLVGNMWFLYLFGNNIEDRLGHWKFLFFYLICGVIAGIGQVVTAPTSMV 124
Query: 199 S-VGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGY 257
VGASGA+ G+ + L++ + +IL ++ LG FV + AA G +I G
Sbjct: 125 PMVGASGAISGVMG-AYLIR--FPRARILSLVFLGFFVTAIPIPAAV----FLGLWIAGQ 177
Query: 258 SVQS---------INHIAHLSGALFGV 275
+V + I ++AH+SG FGV
Sbjct: 178 TVYAAMANPNLPGIAYLAHISG--FGV 202
>gi|418070876|ref|ZP_12708151.1| membrane-associated serine protease [Lactobacillus rhamnosus R0011]
gi|423078786|ref|ZP_17067463.1| peptidase, S54 family [Lactobacillus rhamnosus ATCC 21052]
gi|357540296|gb|EHJ24313.1| membrane-associated serine protease [Lactobacillus rhamnosus R0011]
gi|357549074|gb|EHJ30922.1| peptidase, S54 family [Lactobacillus rhamnosus ATCC 21052]
Length = 229
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 2/112 (1%)
Query: 132 FPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWL 191
+ W++ +T F H H+ N F LY G++ E G++ +L Y G A N S+
Sbjct: 56 YGQWWRLITPVFVHIGLTHILMNGFSLYFLGQMTERLFGHWRFFLLYFIAGFAGNVASFA 115
Query: 192 ILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAA 243
P N ++ GAS A+FGL +++ ++ ++ L QF++ V+ A
Sbjct: 116 FSP-NTLAAGASTAIFGLLGACLMLGDTYRENPVIRQLAR-QFLLLVVLNLA 165
>gi|297564157|ref|YP_003683130.1| rhomboid family protein [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
gi|296848606|gb|ADH70624.1| Rhomboid family protein [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
Length = 306
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ +TAAF H + HL N + +Y+ G +E G+ +L+ GA A V L+
Sbjct: 138 WYRLLTAAFLHGSIFHLLFNGYAMYLLGTQLERWLGHV-RFLTLWVLGAFAGSVLSLLAE 196
Query: 195 KNAVSVGASGAVFGLFAISVLV--KMSWDWRKI 225
N SVGASGA+F LF +++ ++ D R I
Sbjct: 197 PNQFSVGASGAIFALFGAVLVIGRRLRLDLRMI 229
>gi|260943073|ref|XP_002615835.1| hypothetical protein CLUG_04717 [Clavispora lusitaniae ATCC 42720]
gi|238851125|gb|EEQ40589.1| hypothetical protein CLUG_04717 [Clavispora lusitaniae ATCC 42720]
Length = 596
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
WY+ VT F HA + H++ N+ G VE + G + Y+ +G A + P
Sbjct: 272 WYRVVTPIFLHAGFLHIAFNMLLQLTMGAAVERQIGWLKFGVIYMASGIAGFLLGANFSP 331
Query: 195 KNAVSVGASGAVFGLFAISVLV 216
S GASGA+FG+ A ++L+
Sbjct: 332 DGIASTGASGALFGIIATNMLL 353
>gi|329940182|ref|ZP_08289464.1| integral membrane protein [Streptomyces griseoaurantiacus M045]
gi|329301008|gb|EGG44904.1| integral membrane protein [Streptomyces griseoaurantiacus M045]
Length = 272
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 21/151 (13%)
Query: 139 VTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAV 198
+TA F H W HL N+ FLYIFG +E+ G+ L Y+ G AA + L+ +
Sbjct: 104 LTAMFLHGGWLHLLGNMLFLYIFGNNIEDRLGHVRFTLFYLVCGYAAAYGYALVNESSGD 163
Query: 199 S-VGASGAVFGLF-AISVLVKMSWDW----------RKILEVLILGQFVVEKVMEAAQAS 246
+GASGA+ G+ A VL + W ++ ++LG + V + + ++ +
Sbjct: 164 PLIGASGAIAGVLGAYLVLYPRARVWVLVPFLIFLPLRLPAWMVLGFWFVLQAVYSSGSG 223
Query: 247 AGMSGTFIGGYSVQSINHIAHLSGALFGVFL 277
+GT + ++AH+ G L G+ L
Sbjct: 224 VSEAGT---------VAYVAHVVGFLVGMAL 245
>gi|227534843|ref|ZP_03964892.1| S54 family peptidase [Lactobacillus paracasei subsp. paracasei ATCC
25302]
gi|227187599|gb|EEI67666.1| S54 family peptidase [Lactobacillus paracasei subsp. paracasei ATCC
25302]
Length = 282
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 4/113 (3%)
Query: 117 VFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWL 176
VF + L LY W++ +T F H H+ N F LY G++ E+ G++ +L
Sbjct: 99 VFYGARLNPLILYGQ---WWRLMTPVFVHIGLMHILVNGFSLYYLGQMTEQLFGHWRFFL 155
Query: 177 SYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVL 229
Y +G A N S+ P N ++ GAS A+FGL +++ S+ ++ L
Sbjct: 156 LYFISGFAGNVASFAFSP-NTLAAGASTAIFGLLGACLMLGDSFKENPVIRQL 207
>gi|383768245|ref|YP_005447228.1| rhomboid family protein [Phycisphaera mikurensis NBRC 102666]
gi|381388515|dbj|BAM05331.1| rhomboid family protein [Phycisphaera mikurensis NBRC 102666]
Length = 352
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 127 YLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAAN 186
YL +P +QF T F H N HL+ N+ FLY FG VE+ G L Y+ G A
Sbjct: 73 YLQPAYPRLHQFFTYPFLHQNLWHLTGNMVFLYAFGCAVEDRLGKLPYLLFYLAGGVLAG 132
Query: 187 FVSWLILPKNAVSVGASGAVFGLFAI 212
+ +L ++ +GASG+V + I
Sbjct: 133 WAH--VLTSSSPVLGASGSVAAVTGI 156
>gi|110803398|ref|YP_698757.1| rhomboid family protein [Clostridium perfringens SM101]
gi|110683899|gb|ABG87269.1| rhomboid family protein [Clostridium perfringens SM101]
Length = 342
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 71/146 (48%), Gaps = 19/146 (13%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+Y+ VT+ F H+ HL N++ LYI G +E G + Y +G A+ S P
Sbjct: 203 YYRLVTSMFLHSGIVHLLFNMYALYILGDFIERIYGAKKYLVIYFVSGIVASIFSLYFSP 262
Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFI 254
+ VGASGA+FGL +++ + R +G+ +V ++ + FI
Sbjct: 263 --VMGVGASGAIFGLLGAALVFAYNEKDR-------IGKALVTNIIVII-----LLNVFI 308
Query: 255 GGYSVQSINHIAH----LSGALFGVF 276
G S+ +I+ AH ++GA+ G+F
Sbjct: 309 -GLSMSNIDISAHFGGFIAGAILGLF 333
>gi|124359588|gb|ABD28718.2| Protein secE/sec61-gamma protein; Rhomboid-like protein [Medicago
truncatula]
Length = 324
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 73/146 (50%), Gaps = 8/146 (5%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWL---- 191
++F+T F HA HL +N+F L G +E E G + + Y+ +G + +S L
Sbjct: 110 WRFITCMFLHAGVIHLLANMFSLLFIGVRLENEFGFLKIGVLYLLSGFGGSLLSILHMGD 169
Query: 192 ILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSG 251
+ N VSVGASGA+FGL ++L ++ +W L G+ + +A + + G
Sbjct: 170 VKAPNTVSVGASGALFGLLG-AMLSELLTNWTIYLNK---GEKPLTVQFKALTSLLLIIG 225
Query: 252 TFIGGYSVQSINHIAHLSGALFGVFL 277
+ + +++ AH+ G L G FL
Sbjct: 226 LNLAVGFIPHVDNSAHIGGFLSGFFL 251
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.325 0.138 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,228,016,380
Number of Sequences: 23463169
Number of extensions: 168576067
Number of successful extensions: 719272
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1972
Number of HSP's successfully gapped in prelim test: 2993
Number of HSP's that attempted gapping in prelim test: 713625
Number of HSP's gapped (non-prelim): 5334
length of query: 277
length of database: 8,064,228,071
effective HSP length: 140
effective length of query: 137
effective length of database: 9,074,351,707
effective search space: 1243186183859
effective search space used: 1243186183859
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 76 (33.9 bits)