BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037250
(277 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P96617|YDCA_BACSU Putative rhomboid protease YdcA OS=Bacillus subtilis (strain 168)
GN=ydcA PE=3 SV=1
Length = 199
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T HA + HL N +++F +E G L Y +G N +++ P
Sbjct: 58 WWRLITPILLHAGFTHLLFNSMSIFLFAPALERMLGKARFLLVYAGSGIIGNIGTYVTEP 117
Query: 195 KNAVSVGASGAVFGLFAI 212
+ V VGASGA+FGLF +
Sbjct: 118 LDYVHVGASGAIFGLFGV 135
>sp|Q6IUY1|RHBL3_TOXGO Rhomboid-like protease 3 OS=Toxoplasma gondii GN=ROM3 PE=2 SV=1
Length = 263
Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 92/210 (43%), Gaps = 31/210 (14%)
Query: 75 SGSDMISQLELDKPEER-RKPKKSV-------NGVFWIILLNLGLYVADHVFQVRSI--- 123
GSD+ +Q L+ + R K +V + WI + + +Y+ V RS
Sbjct: 5 DGSDVETQSLLNSGDRTLRSWKDTVFPGISWDKSIVWITVAQIIMYIISCVLS-RSYEPN 63
Query: 124 -KSLYL--------YHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGL 174
++L L + NF W + VT F HA HL NL F+ +EE G
Sbjct: 64 ERTLMLLGAAYAPAFSNFQLW-RVVTPLFLHATILHLVLNLVFILHISLRLEERYGTKKF 122
Query: 175 WLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFA-----ISVL-VKMSWDWRKI--L 226
++Y + N +S L+ P A+SVGAS A FG+ +SV+ K+S + ++I +
Sbjct: 123 LVTYFLSAIVGNLLSMLMQPW-ALSVGASTAGFGIIGGMAAEVSVVWCKLSEELKRIYSM 181
Query: 227 EVLILGQFVVEKVMEAAQASAGMSGTFIGG 256
++ IL + + G G F+ G
Sbjct: 182 DICILAVLIYFLSFGRTVDTFGHLGGFLAG 211
>sp|Q76NQ1|RHDF1_DROME Inactive rhomboid protein 1 OS=Drosophila melanogaster GN=rho-5 PE=2
SV=1
Length = 1429
Score = 43.5 bits (101), Expect = 0.002, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
Y+ +T+ HA HL+ L F ++F +E G + YI +G A N S +++P
Sbjct: 1094 YRLLTSLCMHAGILHLAITLIFQHLFLADLERLIGTVRTAIVYIMSGFAGNLTSAILVPH 1153
Query: 196 NAVSVGASGAVFGLFA--ISVLVKMSWDW 222
VG S ++ G+ A I++LV M W +
Sbjct: 1154 RP-EVGPSASLSGVVASLIALLVWMHWKY 1181
>sp|Q5XJY4|PARL_MOUSE Presenilins-associated rhomboid-like protein, mitochondrial OS=Mus
musculus GN=Parl PE=1 SV=1
Length = 377
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 70/141 (49%), Gaps = 13/141 (9%)
Query: 141 AAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLI---LPKNA 197
+ F H + H+++N++ L+ F + G Y+ G +NFVS++ +
Sbjct: 210 STFSHFSLFHMAANMYVLWSFSSSIVNILGQEQFVAVYLSAGVISNFVSYVCKVATGRYG 269
Query: 198 VSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEA--AQASAGMSGTFIG 255
S+GASGA+ + A +V K+ + R + L + F ++A A +AGM I
Sbjct: 270 PSLGASGAIMTVLA-AVCTKIP-EGRLAIIFLPVFTFTAGNALKAIIAMDTAGM----IL 323
Query: 256 GYSVQSINHIAHLSGALFGVF 276
G+ +H AHL GALFG++
Sbjct: 324 GWKF--FDHAAHLGGALFGIW 342
>sp|Q5R5H4|PARL_PONAB Presenilins-associated rhomboid-like protein, mitochondrial
OS=Pongo abelii GN=PARL PE=2 SV=1
Length = 379
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 70/141 (49%), Gaps = 13/141 (9%)
Query: 141 AAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSW---LILPKNA 197
+ F H + H+++N++ L+ F + G Y+ G +NFVS+ + +
Sbjct: 212 STFSHFSLFHMAANMYVLWSFSSSIVNILGQEQFMAVYLSAGVISNFVSYVGKVATGRYG 271
Query: 198 VSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEA--AQASAGMSGTFIG 255
S+GASGA+ + A +V K+ + R + L + F ++A A +AGM I
Sbjct: 272 PSLGASGAIMTVLA-AVCTKIP-EGRLAIIFLPMFTFTAGNALKAIIAMDTAGM----IL 325
Query: 256 GYSVQSINHIAHLSGALFGVF 276
G+ +H AHL GALFG++
Sbjct: 326 GWKF--FDHAAHLGGALFGIW 344
>sp|Q9H300|PARL_HUMAN Presenilins-associated rhomboid-like protein, mitochondrial OS=Homo
sapiens GN=PARL PE=1 SV=2
Length = 379
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 70/141 (49%), Gaps = 13/141 (9%)
Query: 141 AAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSW---LILPKNA 197
+ F H + H+++N++ L+ F + G Y+ G +NFVS+ + +
Sbjct: 212 STFSHFSLFHMAANMYVLWSFSSSIVNILGQEQFMAVYLSAGVISNFVSYVGKVATGRYG 271
Query: 198 VSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEA--AQASAGMSGTFIG 255
S+GASGA+ + A +V K+ + R + L + F ++A A +AGM I
Sbjct: 272 PSLGASGAIMTVLA-AVCTKIP-EGRLAIIFLPMFTFTAGNALKAIIAMDTAGM----IL 325
Query: 256 GYSVQSINHIAHLSGALFGVF 276
G+ +H AHL GALFG++
Sbjct: 326 GWKF--FDHAAHLGGALFGIW 344
>sp|Q3B8P0|PARL_RAT Presenilins-associated rhomboid-like protein, mitochondrial
OS=Rattus norvegicus GN=Parl PE=2 SV=1
Length = 377
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 70/141 (49%), Gaps = 13/141 (9%)
Query: 141 AAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLI---LPKNA 197
+ F H + H+++N++ L+ F + G Y+ G +NFVS++ +
Sbjct: 210 STFSHFSLFHMAANMYVLWSFSTSIVNILGQEQFVAVYLSAGVISNFVSYVCKVATGRYG 269
Query: 198 VSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEA--AQASAGMSGTFIG 255
S+GASGA+ + A +V K+ + R + L + F ++A A +AGM I
Sbjct: 270 PSLGASGAIMTVLA-AVCTKIP-EGRLAIIFLPVFTFTAGNALKAIIAMDTAGM----IL 323
Query: 256 GYSVQSINHIAHLSGALFGVF 276
G+ +H AHL GALFG++
Sbjct: 324 GWKF--FDHAAHLGGALFGIW 342
>sp|Q2KHV4|PARL_BOVIN Presenilins-associated rhomboid-like protein, mitochondrial OS=Bos
taurus GN=PARL PE=2 SV=1
Length = 377
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 13/141 (9%)
Query: 141 AAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLI---LPKNA 197
+ F H + H+++N++ L+ F + G Y+ G + FVS++ +
Sbjct: 210 STFSHFSLFHMAANMYVLWSFSSSIVNILGQEQFMAVYLSAGVISTFVSYVCKVATGRYG 269
Query: 198 VSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEA--AQASAGMSGTFIG 255
S+GASGA+ + A +V K+ + R + L + F ++A A +AGM I
Sbjct: 270 PSLGASGAIMTVLA-AVCTKIP-EGRLAIIFLPMFTFTAGNALKAIIAMDTAGM----IL 323
Query: 256 GYSVQSINHIAHLSGALFGVF 276
G+ +H AHL GALFG++
Sbjct: 324 GWKF--FDHAAHLGGALFGIW 342
>sp|P46116|AARA_PROST Rhomboid protease AarA OS=Providencia stuartii GN=aarA PE=1 SV=1
Length = 281
Score = 40.0 bits (92), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 14/95 (14%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVS--WLI 192
W+++ + H+N HL+ N L++ G E G F L YI +G A S W
Sbjct: 68 WWRYPISMMLHSNGTHLAFNCLALFVIGIGCERAYGKFKLLAIYIISGIGAALFSAYWQY 127
Query: 193 LPKN------------AVSVGASGAVFGLFAISVL 215
+ + VGASGA+ G+ A SV+
Sbjct: 128 YEISNSDLWTDSTVYITIGVGASGAIMGIAAASVI 162
>sp|Q19821|ROM1_CAEEL Rhomboid-related protein 1 OS=Caenorhabditis elegans GN=rom-1 PE=3
SV=2
Length = 356
Score = 40.0 bits (92), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 68/146 (46%), Gaps = 12/146 (8%)
Query: 134 AWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLIL 193
AW +F + F HA NHL N+ + G +E + + Y+ + + + + I
Sbjct: 166 AW-RFTSYMFLHAGLNHLLGNVIIQLLVGIPLEVAHKIWRIGPIYLLAVTSGSLLQYAID 224
Query: 194 PKNAVSVGASGAVFGL-FAISVLVKMSWDWRKI--LEVLILGQFVVEKVMEAAQASAGMS 250
P N++ VGAS V+ L FA V ++W + + VL+L F+ A +
Sbjct: 225 P-NSLLVGASAGVYALIFAHVANVILNWHEMPLRWIRVLVLFVFIFLDFGGAIHRRFYTN 283
Query: 251 GTFIGGYSVQSINHIAHLSGALFGVF 276
S++H+AH++GA+ G+F
Sbjct: 284 -------DCDSVSHLAHIAGAVTGLF 302
>sp|B0VX73|RHDF1_CALJA Inactive rhomboid protein 1 OS=Callithrix jacchus GN=RHBDF1 PE=3
SV=1
Length = 855
Score = 39.7 bits (91), Expect = 0.024, Method: Composition-based stats.
Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 25/149 (16%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+Y+ + F HA H ++ F + +E+ G + + Y+ +G N S + LP
Sbjct: 653 FYRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFLP 712
Query: 195 KNAVSVGASGAVFGLFA-ISVLVKMSWD-----WRKILEVLILGQFVVEKVMEAAQASAG 248
A VG +G+ FG+ A + V + SW WR ++L + F+
Sbjct: 713 YRA-EVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFL------------- 758
Query: 249 MSGTFIGGYSVQSINHIAHLSGALFGVFL 277
F G + I++ AH+SG + G+FL
Sbjct: 759 ----FTFGL-LPWIDNFAHISGFISGLFL 782
>sp|Q96CC6|RHDF1_HUMAN Inactive rhomboid protein 1 OS=Homo sapiens GN=RHBDF1 PE=1 SV=2
Length = 855
Score = 39.7 bits (91), Expect = 0.025, Method: Composition-based stats.
Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 25/149 (16%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+Y+ + F HA H ++ F + +E+ G + + Y+ +G N S + LP
Sbjct: 653 FYRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFLP 712
Query: 195 KNAVSVGASGAVFGLFA-ISVLVKMSWD-----WRKILEVLILGQFVVEKVMEAAQASAG 248
A VG +G+ FG+ A + V + SW WR ++L + F+
Sbjct: 713 YRA-EVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFL------------- 758
Query: 249 MSGTFIGGYSVQSINHIAHLSGALFGVFL 277
F G + I++ AH+SG + G+FL
Sbjct: 759 ----FTFGL-LPWIDNFAHISGFISGLFL 782
>sp|A9L8T6|RHDF1_PAPAN Inactive rhomboid protein 1 OS=Papio anubis GN=RHBDF1 PE=3 SV=1
Length = 855
Score = 39.7 bits (91), Expect = 0.026, Method: Composition-based stats.
Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 25/149 (16%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+Y+ + F HA H ++ F + +E+ G + + Y+ +G N S + LP
Sbjct: 653 FYRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFLP 712
Query: 195 KNAVSVGASGAVFGLFA-ISVLVKMSWD-----WRKILEVLILGQFVVEKVMEAAQASAG 248
A VG +G+ FG+ A + V + SW WR ++L + F+
Sbjct: 713 YRA-EVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFL------------- 758
Query: 249 MSGTFIGGYSVQSINHIAHLSGALFGVFL 277
F G + I++ AH+SG + G+FL
Sbjct: 759 ----FTFGL-LPWIDNFAHISGFISGLFL 782
>sp|B1MT31|RHDF1_CALMO Inactive rhomboid protein 1 OS=Callicebus moloch GN=RHBDF1 PE=3
SV=1
Length = 855
Score = 39.7 bits (91), Expect = 0.026, Method: Composition-based stats.
Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 25/149 (16%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+Y+ + F HA H ++ F + +E+ G + + Y+ +G N S + LP
Sbjct: 653 FYRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFLP 712
Query: 195 KNAVSVGASGAVFGLFA-ISVLVKMSWD-----WRKILEVLILGQFVVEKVMEAAQASAG 248
A VG +G+ FG+ A + V + SW WR ++L + F+
Sbjct: 713 YRA-EVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFL------------- 758
Query: 249 MSGTFIGGYSVQSINHIAHLSGALFGVFL 277
F G + I++ AH+SG + G+FL
Sbjct: 759 ----FTFGL-LPWIDNFAHISGFISGLFL 782
>sp|Q6GMF8|RHDF1_DANRE Inactive rhomboid protein 1 OS=Danio rerio GN=rhbdf1 PE=2 SV=1
Length = 857
Score = 39.3 bits (90), Expect = 0.031, Method: Composition-based stats.
Identities = 39/149 (26%), Positives = 65/149 (43%), Gaps = 25/149 (16%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+Y+ + F HA H ++ F + +E+ G + + YI +G N S + LP
Sbjct: 655 FYRLWLSLFLHAGILHCLVSVCFQMTILRDLEKLAGWLRISIIYILSGITGNLASAIFLP 714
Query: 195 KNAVSVGASGAVFGLFA-ISVLVKMSWD-----WRKILEVLILGQFVVEKVMEAAQASAG 248
A VG +G+ FG+ A + V + SW WR ++L + F+
Sbjct: 715 YRA-EVGPAGSQFGILACLFVELIQSWQILAQPWRAFTKLLCVVLFL------------- 760
Query: 249 MSGTFIGGYSVQSINHIAHLSGALFGVFL 277
F G + I++ AH+SG + G FL
Sbjct: 761 ----FAFGL-LPWIDNFAHISGFISGFFL 784
>sp|A7YWH9|RHDF1_BOVIN Inactive rhomboid protein 1 OS=Bos taurus GN=RHBDF1 PE=2 SV=1
Length = 856
Score = 39.3 bits (90), Expect = 0.032, Method: Composition-based stats.
Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 25/149 (16%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+Y+ + F HA H ++ F + +E+ G + + Y+ +G N S + LP
Sbjct: 654 FYRLWLSLFLHAGVLHCLVSVCFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFLP 713
Query: 195 KNAVSVGASGAVFGLFA-ISVLVKMSWD-----WRKILEVLILGQFVVEKVMEAAQASAG 248
A VG +G+ FG+ A + V + SW WR ++L + F+
Sbjct: 714 YRA-EVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFL------------- 759
Query: 249 MSGTFIGGYSVQSINHIAHLSGALFGVFL 277
F G + I++ AH+SG + G+FL
Sbjct: 760 ----FTFGL-LPWIDNFAHISGFISGLFL 783
>sp|Q499S9|RHDF1_RAT Inactive rhomboid protein 1 OS=Rattus norvegicus GN=Rhbdf1 PE=2
SV=1
Length = 856
Score = 38.9 bits (89), Expect = 0.044, Method: Composition-based stats.
Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 25/149 (16%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+Y+ + F HA H ++ F + +E+ G + + Y+ +G N S + LP
Sbjct: 654 FYRLWLSLFLHAGILHCLVSVCFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFLP 713
Query: 195 KNAVSVGASGAVFGLFA-ISVLVKMSWD-----WRKILEVLILGQFVVEKVMEAAQASAG 248
A VG +G+ FG+ A + V + SW WR ++L + F+
Sbjct: 714 YRA-EVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFL------------- 759
Query: 249 MSGTFIGGYSVQSINHIAHLSGALFGVFL 277
F G + I++ AH+SG + G+FL
Sbjct: 760 ----FAFGL-LPWIDNFAHISGFVSGLFL 783
>sp|Q6PIX5|RHDF1_MOUSE Inactive rhomboid protein 1 OS=Mus musculus GN=Rhbdf1 PE=1 SV=2
Length = 856
Score = 38.1 bits (87), Expect = 0.062, Method: Composition-based stats.
Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 25/149 (16%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
+Y+ + F HA H ++ F + +E+ G + + Y+ +G N S + LP
Sbjct: 654 FYRLWLSLFLHAGILHCLVSVCFQMTVLRDLEKLAGWHRIAIIYLLSGITGNLASAIFLP 713
Query: 195 KNAVSVGASGAVFGLFA-ISVLVKMSWD-----WRKILEVLILGQFVVEKVMEAAQASAG 248
A VG +G+ FG+ A + V + SW WR ++L + F+
Sbjct: 714 YRA-EVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFL------------- 759
Query: 249 MSGTFIGGYSVQSINHIAHLSGALFGVFL 277
F G + I++ AH+SG + G+FL
Sbjct: 760 ----FAFGL-LPWIDNFAHISGFVSGLFL 783
>sp|P64816|Y1372_MYCBO Uncharacterized protein Mb1372 OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=Mb1372 PE=4 SV=1
Length = 240
Score = 38.1 bits (87), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 66/151 (43%), Gaps = 27/151 (17%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
+ + A HANW+HL +N L + G L+ + +W + I +WLI
Sbjct: 78 WGVIFAPLLHANWHHLMANTIPLLVLGFLMTLAGLSRFVWATAIIW-ILGGLGTWLI--G 134
Query: 196 NAVS-------VGASGAVFG----LFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQ 244
N S +GASG +FG L + V+ WD ++ +++L FV ++ A
Sbjct: 135 NVGSSCGPTDHIGASGLIFGWLAFLLVFGLFVRKGWD--IVIGLVVL--FVYGGILLGAM 190
Query: 245 ASAGMSGTFIGGYSVQSINHIAHLSGALFGV 275
G GG S Q HLSGA+ GV
Sbjct: 191 PVLGQC----GGVSWQ-----GHLSGAVAGV 212
>sp|P64815|Y1337_MYCTU Uncharacterized protein Rv1337/MT1378 OS=Mycobacterium tuberculosis
GN=Rv1337 PE=4 SV=1
Length = 240
Score = 38.1 bits (87), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 66/151 (43%), Gaps = 27/151 (17%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
+ + A HANW+HL +N L + G L+ + +W + I +WLI
Sbjct: 78 WGVIFAPLLHANWHHLMANTIPLLVLGFLMTLAGLSRFVWATAIIW-ILGGLGTWLI--G 134
Query: 196 NAVS-------VGASGAVFG----LFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQ 244
N S +GASG +FG L + V+ WD ++ +++L FV ++ A
Sbjct: 135 NVGSSCGPTDHIGASGLIFGWLAFLLVFGLFVRKGWD--IVIGLVVL--FVYGGILLGAM 190
Query: 245 ASAGMSGTFIGGYSVQSINHIAHLSGALFGV 275
G GG S Q HLSGA+ GV
Sbjct: 191 PVLGQC----GGVSWQ-----GHLSGAVAGV 212
>sp|P54493|GLUP_BACSU Rhomboid protease GluP OS=Bacillus subtilis (strain 168) GN=gluP
PE=1 SV=2
Length = 507
Score = 37.7 bits (86), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++ +T H HL+ N L+ G VE G+ L Y+ G + S++ P
Sbjct: 222 WWRLLTPIVLHIGIAHLAFNTLALWSVGTAVERMYGSGRFLLIYLAAGITGSIASFVFSP 281
Query: 195 KNAVSVGASGAVFGLFAISVLVKMS 219
S GASGA+FG + V +S
Sbjct: 282 YP--SAGASGAIFGCLGALLYVALS 304
>sp|A0JPA1|RHDF2_XENTR Inactive rhomboid protein 2 OS=Xenopus tropicalis GN=rhbdf2 PE=2
SV=1
Length = 826
Score = 37.4 bits (85), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 67/152 (44%), Gaps = 14/152 (9%)
Query: 127 YLYHNFP-AWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAA 185
+L +P +Y+ + F HA H ++ F + +E+ G + + YI +G
Sbjct: 615 FLNPEYPDQFYRLWLSLFLHAGVIHCCVSVVFQMTVLRDLEKLAGWLRISIIYILSGITG 674
Query: 186 NFVSWLILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQA 245
N S L LP A VG +G+ FGL A + V++ W+ ++ K +A
Sbjct: 675 NLASALFLPYRA-EVGPAGSQFGLLAC-LFVELFQSWQ-----------ILAKPWKAFLK 721
Query: 246 SAGMSGTFIGGYSVQSINHIAHLSGALFGVFL 277
G+ + I++IAH+ G L G+ L
Sbjct: 722 LLGIVLFLFLFGLLPWIDNIAHIFGFLSGLLL 753
>sp|P53426|Y1171_MYCLE Uncharacterized protein ML1171 OS=Mycobacterium leprae (strain TN)
GN=ML1171 PE=4 SV=1
Length = 251
Score = 37.0 bits (84), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 87/211 (41%), Gaps = 48/211 (22%)
Query: 87 KPEERRKPKKSVNGVFWIILLNLGLYVADHVFQ----------VRSIKSLYLYHNFPAWY 136
+ E R+ + V GV + + L LY+ + + Q +R +K+ L+
Sbjct: 39 ETETNRRLRWMVGGVTILTFMAL-LYLVELIDQLTRHSLDNNGIRLLKTDVLW------- 90
Query: 137 QFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLS---YIFTGAAANFVSWLIL 193
A HANW HL +N L + G L+ + +W++ +IF G+A +WLI
Sbjct: 91 GISFAPVLHANWQHLVANTIPLLVLGFLIALAGLSRFIWVTAMVWIFGGSA----TWLIG 146
Query: 194 PKNAV-----SVGASGAVFG----LFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQ 244
+ +G SG +FG L + V+ WD I+ ++L F V+
Sbjct: 147 NMGSSFGPTDHIGVSGLIFGWLAFLLVFGLFVRRGWD---IIGCMVL--FAYGGVLLGVM 201
Query: 245 ASAGMSGTFIGGYSVQSINHIAHLSGALFGV 275
G GG S Q HL GA+ GV
Sbjct: 202 PVLGRC----GGVSWQ-----GHLCGAISGV 223
>sp|C8VCL5|Y0929_EMENI Uncharacterized rhomboid protein AN10929 OS=Emericella nidulans
(strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 /
M139) GN=AN10929 PE=3 SV=1
Length = 503
Score = 37.0 bits (84), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 5/103 (4%)
Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
W++F+ F H+ + H+ NL G +E G + L Y+ +G +
Sbjct: 251 WFRFIIPMFLHSGFVHIGFNLLVQMTMGADMERMIGWWRYGLVYLSSGIWGFVLGGNYAG 310
Query: 195 KNAVSVGASGAVFGLFAISVLVKM-SWDWRK----ILEVLILG 232
+ S G SGA+FG+ A+ VL + W+ R+ L +++LG
Sbjct: 311 QGEASCGCSGALFGILALFVLDLLYGWNDRQNPWVELIIMVLG 353
>sp|P20350|RHOM_DROME Protein rhomboid OS=Drosophila melanogaster GN=rho PE=1 SV=2
Length = 355
Score = 37.0 bits (84), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 7/143 (4%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
++F + F HANW HL N+ FG +E G + + Y+ G A + ++
Sbjct: 151 WRFFSYMFLHANWFHLGFNIVIQLFFGIPLEVMHGTARIGVIYM-AGVFAGSLGTSVVDS 209
Query: 196 NAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLI-LGQFVVEKVMEAAQASAGMSGTFI 254
VGASG V+ L A + L ++ ++ + LG V+ + A + F
Sbjct: 210 EVFLVGASGGVYALLA-AHLANITLNYAHMKSASTQLGSVVI--FVSCDLGYALYTQYFD 266
Query: 255 GGYSVQ--SINHIAHLSGALFGV 275
G + +++IAHL+GAL G+
Sbjct: 267 GSAFAKGPQVSYIAHLTGALAGL 289
>sp|Q695T9|RHBL2_TOXGO Rhomboid-like protease 2 OS=Toxoplasma gondii GN=ROM2 PE=2 SV=1
Length = 283
Score = 36.2 bits (82), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
++ + F H N H+ NL+ G +EE+ G L Y G AN +S +L
Sbjct: 111 WRLICPLFLHLNLFHILMNLWVQIRIGLTMEEKYGWKMLLAVYFGVGVLANMISAAVLFC 170
Query: 196 NAVSVGASGAVFGLFAISVLVKMSWDWRKILE 227
+ GAS AVF L + L +++ W I +
Sbjct: 171 GQMKAGASTAVFALIGVQ-LAELALIWHAIQD 201
>sp|B7U179|ABAP1_ARATH ARMADILLO BTB ARABIDOPSIS PROTEIN 1 OS=Arabidopsis thaliana
GN=ABAP1 PE=1 SV=1
Length = 737
Score = 33.5 bits (75), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 31 PFNFLPKSSTIKCLSNSPKL-NLPIKLRPLRHPSLTLRSRLVCNMSGSDMISQL 83
P F KSST +SN P + N P + R R + L+ +L N G+ +++QL
Sbjct: 10 PLKFSVKSSTAPVISNHPPMENHPKRQRTTRLAARNLKRKLSHNTDGAPIVTQL 63
>sp|P58872|RHBL3_HUMAN Rhomboid-related protein 3 OS=Homo sapiens GN=RHBDL3 PE=2 SV=1
Length = 404
Score = 33.5 bits (75), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 9/122 (7%)
Query: 110 GLYVADHVFQV---RSIKSLYLYH---NFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGK 163
G+ + V QV R +K+ +YH W +++T F HA HL N+ + G
Sbjct: 181 GVSLGQFVLQVTHPRYLKNSLVYHPQLRAQVW-RYLTYIFMHAGIEHLGLNVVLQLLVGV 239
Query: 164 LVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFAISVL-VKMSWDW 222
+E G + L Y+ G A ++ + A VG+SG V+ L + + + M+W
Sbjct: 240 PLEMVHGATRIGLVYV-AGVVAGSLAVSVADMTAPVVGSSGGVYALVSAHLANIVMNWSG 298
Query: 223 RK 224
K
Sbjct: 299 MK 300
>sp|Q5JGX5|GCSPA_PYRKO Probable glycine dehydrogenase [decarboxylating] subunit 1
OS=Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM
12380 / KOD1) GN=gcvPA PE=3 SV=1
Length = 451
Score = 33.5 bits (75), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 13/63 (20%)
Query: 216 VKMSWDWRKILEVLILGQFVVEKVMEAAQASAGM---SGTFIG--GYSVQSINHIAHLSG 270
V++ WD R GQ +EK+ EA + +AG+ F G +++ I IAH +G
Sbjct: 181 VEVPWDER--------GQMDIEKLKEAVEGAAGVYIEMPNFFGLLEENIREIGEIAHDAG 232
Query: 271 ALF 273
ALF
Sbjct: 233 ALF 235
>sp|P58873|RHBL3_MOUSE Rhomboid-related protein 3 OS=Mus musculus GN=Rhbdl3 PE=2 SV=1
Length = 404
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 9/122 (7%)
Query: 110 GLYVADHVFQV---RSIKSLYLYH---NFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGK 163
G+ + V QV R +K+ +YH AW ++VT F HA L N+ + G
Sbjct: 181 GVLLDQFVLQVTHPRYLKNSLVYHPQLRAQAW-RYVTYIFMHAGVEQLGLNVALQLLVGV 239
Query: 164 LVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFAISVL-VKMSWDW 222
+E G + L Y+ G A ++ + A VG+SG V+ L + + + M+W
Sbjct: 240 PLEMVHGATRIGLVYV-AGVVAGSLAVSVADMTAPVVGSSGGVYALVSAHLANIVMNWSG 298
Query: 223 RK 224
K
Sbjct: 299 MK 300
>sp|Q00M95|RHDF2_CANFA Inactive rhomboid protein 2 OS=Canis familiaris GN=RHBDF2 PE=2 SV=1
Length = 827
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 67/143 (46%), Gaps = 15/143 (10%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
Y+ + F HA H ++ F + +E+ G + + +I +G N S + LP
Sbjct: 626 YRLWLSLFLHAGVVHCLVSVVFQMTILRDLEKLAGWHRIAIIFILSGITGNLASAIFLPY 685
Query: 196 NAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEA-AQASAGMSGTFI 254
A VG +G+ FGL A + V++ W+ ++E+ +A SA + FI
Sbjct: 686 RA-EVGPAGSQFGLLAC-LFVELFQSWQ-----------LLERPWKAFLNLSAIVLFLFI 732
Query: 255 GGYSVQSINHIAHLSGALFGVFL 277
G + I++IAH+ G L G+ L
Sbjct: 733 CGL-LPWIDNIAHIFGFLSGLLL 754
>sp|Q58EK4|PARL_DANRE Presenilins-associated rhomboid-like protein, mitochondrial
OS=Danio rerio GN=parl PE=2 SV=1
Length = 383
Score = 33.1 bits (74), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 68/141 (48%), Gaps = 9/141 (6%)
Query: 139 VTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAV 198
V ++F H + H+ N++ L+ F + G Y+ G + FVS++
Sbjct: 211 VLSSFSHYSVIHMVVNMYVLWTFSSSIVSLLGREQFLALYLSGGVISTFVSYVFKTATGR 270
Query: 199 ---SVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIG 255
S+GASG++ + A +V K+ + + + +L + F ++A A ++G +G
Sbjct: 271 LGPSLGASGSIMTVLA-AVCTKIP-EAKLGIVLLPVISFSAGNALKALVA-LDIAGLVLG 327
Query: 256 GYSVQSINHIAHLSGALFGVF 276
+ +H AHL GALFGV+
Sbjct: 328 W---RFFDHAAHLGGALFGVW 345
>sp|Q80WQ6|RHDF2_MOUSE Inactive rhomboid protein 2 OS=Mus musculus GN=Rhbdf2 PE=1 SV=1
Length = 827
Score = 32.3 bits (72), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 67/143 (46%), Gaps = 15/143 (10%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
Y+ + F HA H ++ F + +E+ G + + +I +G N S + LP
Sbjct: 626 YRIWLSLFLHAGIVHCLVSVVFQMTILRDLEKLAGWHRISIIFILSGITGNLASAIFLPY 685
Query: 196 NAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEA-AQASAGMSGTFI 254
A VG +G+ FGL A + V++ W+ ++E+ +A SA + FI
Sbjct: 686 RA-EVGPAGSQFGLLAC-LFVELFQSWQ-----------LLERPWKAFFNLSAIVLFLFI 732
Query: 255 GGYSVQSINHIAHLSGALFGVFL 277
G + I++IAH+ G L G+ L
Sbjct: 733 CGL-LPWIDNIAHIFGFLSGMLL 754
>sp|Q6PJF5|RHDF2_HUMAN Inactive rhomboid protein 2 OS=Homo sapiens GN=RHBDF2 PE=1 SV=2
Length = 856
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 136 YQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPK 195
Y+ + F HA H ++ F + +E+ G + + +I +G N S + LP
Sbjct: 655 YRLWLSLFLHAGVVHCLVSVVFQMTILRDLEKLAGWHRIAIIFILSGITGNLASAIFLPY 714
Query: 196 NAVSVGASGAVFGLFAI 212
A VG +G+ FGL A
Sbjct: 715 RA-EVGPAGSQFGLLAC 730
>sp|A8CG78|PA2A2_DABSI Acidic phospholipase A2 DsM-a2/DsM-a2' OS=Daboia siamensis PE=1
SV=1
Length = 138
Score = 31.6 bits (70), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 4/33 (12%)
Query: 158 LYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSW 190
LY FG+++ ++ GNFGL LSY++ G + W
Sbjct: 18 LYQFGEMINQKTGNFGL-LSYVYYGC---YCGW 46
>sp|A8CG87|PA2A2_DABRR Acidic phospholipase A2 Drk-a2 OS=Daboia russelii PE=2 SV=1
Length = 138
Score = 31.6 bits (70), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 4/33 (12%)
Query: 158 LYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSW 190
LY FG+++ ++ GNFGL LSY++ G + W
Sbjct: 18 LYQFGEMINQKTGNFGL-LSYVYYGC---YCGW 46
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.138 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,848,059
Number of Sequences: 539616
Number of extensions: 3808611
Number of successful extensions: 11733
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 11697
Number of HSP's gapped (non-prelim): 60
length of query: 277
length of database: 191,569,459
effective HSP length: 116
effective length of query: 161
effective length of database: 128,974,003
effective search space: 20764814483
effective search space used: 20764814483
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)