Query 037250
Match_columns 277
No_of_seqs 197 out of 1671
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 10:18:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037250.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037250hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00101 rhomboid-1 protease; 100.0 6.2E-28 1.4E-32 219.7 15.8 187 79-277 34-234 (278)
2 PRK10907 intramembrane serine 99.9 7.3E-27 1.6E-31 212.9 16.2 168 96-277 92-264 (276)
3 COG0705 Membrane associated se 99.9 1.2E-23 2.6E-28 186.6 14.7 171 97-276 16-204 (228)
4 KOG2289 Rhomboid family protei 99.8 1.7E-21 3.6E-26 179.4 2.0 87 128-215 112-198 (316)
5 PF01694 Rhomboid: Rhomboid fa 99.8 4E-21 8.7E-26 157.8 4.0 134 131-276 2-135 (145)
6 KOG2632 Rhomboid family protei 99.6 1.4E-15 3.1E-20 135.5 8.3 170 94-276 11-191 (258)
7 KOG2290 Rhomboid family protei 99.5 1.4E-14 3E-19 137.0 2.8 128 130-277 446-579 (652)
8 KOG2980 Integral membrane prot 99.1 5.5E-11 1.2E-15 108.2 2.8 169 99-276 116-294 (310)
9 PF08551 DUF1751: Eukaryotic i 98.1 2.6E-06 5.6E-11 66.5 3.9 77 134-210 7-94 (99)
10 PF04511 DER1: Der1-like famil 98.0 0.00016 3.5E-09 63.1 12.5 95 98-192 2-103 (197)
11 KOG0858 Predicted membrane pro 96.8 0.0031 6.8E-08 56.2 6.7 96 95-190 10-112 (239)
12 KOG4463 Uncharacterized conser 94.8 0.029 6.3E-07 50.8 3.7 61 130-191 46-106 (323)
13 KOG2890 Predicted membrane pro 94.6 0.11 2.5E-06 48.0 7.0 81 133-213 65-156 (326)
14 COG5291 Predicted membrane pro 94.0 0.14 3.1E-06 46.1 6.0 73 96-168 18-94 (313)
15 COG0705 Membrane associated se 41.6 43 0.00094 29.2 4.5 71 130-215 135-205 (228)
16 PF09527 ATPase_gene1: Putativ 31.5 1.6E+02 0.0035 19.7 6.2 40 150-189 9-49 (55)
17 PF03419 Peptidase_U4: Sporula 29.2 4.4E+02 0.0096 24.0 12.0 27 149-175 11-37 (293)
18 PF14898 DUF4491: Domain of un 22.9 97 0.0021 23.9 2.9 46 165-217 26-71 (94)
19 PLN02953 phosphatidate cytidyl 21.9 7.6E+02 0.016 24.2 12.8 18 259-276 301-318 (403)
No 1
>PTZ00101 rhomboid-1 protease; Provisional
Probab=99.95 E-value=6.2e-28 Score=219.70 Aligned_cols=187 Identities=19% Similarity=0.218 Sum_probs=133.8
Q ss_pred CccccccCCcccccCCCCchhHHHHHHHHHHHHHHHHHHhhhh----hhh-hhh-------hhccCCCcceeeecccccC
Q 037250 79 MISQLELDKPEERRKPKKSVNGVFWIILLNLGLYVADHVFQVR----SIK-SLY-------LYHNFPAWYQFVTAAFCHA 146 (277)
Q Consensus 79 ~~~~~~l~~~~~~~~~~~~~~~t~~lI~ln~~vfl~~~~~~~~----~~~-~~~-------~~~~~~~~wrl~Ts~F~H~ 146 (277)
..+.+.+++.|.+..+.+.+++|..|+++|+++|++....+.. +.. ... ....++||||++|++|+|.
T Consensus 34 ~~~~~~i~~ler~Fp~f~i~~l~~~Iiii~iivfil~l~~~~~~~l~p~~~~L~~~Ga~~~~~i~~gq~WRLiT~~FlH~ 113 (278)
T PTZ00101 34 IQRSKPIDVLNLIFPHFTWKSFIMAISIIQIIVFIISVSIKPADFLTPSDSLLVTLGANVASRIKQGEIHRLILPIFLHA 113 (278)
T ss_pred cccCCChHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHhCcchhhhhcCCCHHHHHHHHHcc
Confidence 3445557788888889999999999999999999987653211 000 111 1124689999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhcCCCceeechHHHHHHHHHHHHHHh-hchhhH-H
Q 037250 147 NWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFAISVLVK-MSWDWR-K 224 (277)
Q Consensus 147 ~~~HL~~Nm~~l~~~G~~le~~~G~~~~l~~yl~s~~~g~l~~~~~~~~~~~~~GaSG~ifgl~g~~~~l~-~~~~~~-~ 224 (277)
++.|+++||+.++.+|..+|+.+|++|++.+|+++|++|++++....+. ..++||||++||++|+..... ..|... .
T Consensus 114 ~~~HLl~Nm~~l~~~G~~lE~~~G~~r~~ilYl~sGi~G~l~s~~~~~~-~~svGASgAifGLiGa~~~~lil~w~~~~~ 192 (278)
T PTZ00101 114 NIFHTFFNVFFQLRMGFTLEKNYGIVKIIILYFLTGIYGNILSSSVTYC-PIKVGASTSGMGLLGIVTSELILLWHVIRH 192 (278)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHccC-CcEEehhHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999999887653 468999999999999976421 111110 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccceecCCCCchhhHHHHHHHHHHHHhC
Q 037250 225 ILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQSINHIAHLSGALFGVFL 277 (277)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vs~~aHLgG~l~G~ll 277 (277)
.... ......+ .++.... ......+++|+.||+||+++|+++
T Consensus 193 ~~~~-~~~~i~~-~li~~~l---------~~~~~g~~Id~~aHlGG~i~G~ll 234 (278)
T PTZ00101 193 RERV-VFNIIFF-SLISFFY---------YFTFNGSNIDHVGHLGGLLSGISM 234 (278)
T ss_pred HHHH-HHHHHHH-HHHHHHH---------HHhcCCCCccHHHHHHHHHHHHHH
Confidence 0011 1000011 1110000 011123789999999999999863
No 2
>PRK10907 intramembrane serine protease GlpG; Provisional
Probab=99.95 E-value=7.3e-27 Score=212.87 Aligned_cols=168 Identities=15% Similarity=0.135 Sum_probs=123.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhh----hccCCCcceeeecccccCChhHHHHHHHHHHHHHHHHHHhhhh
Q 037250 96 KSVNGVFWIILLNLGLYVADHVFQVRSIKSLYL----YHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGN 171 (277)
Q Consensus 96 ~~~~~t~~lI~ln~~vfl~~~~~~~~~~~~~~~----~~~~~~~wrl~Ts~F~H~~~~HL~~Nm~~l~~~G~~le~~~G~ 171 (277)
+..|+|..++++|++||++..+........... ....+||||++|++|+|.|+.|+++||+.+|.+|+.+|+.+|+
T Consensus 92 ~~~p~T~~li~i~i~vf~l~~~~~~~~~~~~l~~~~~~~~~~q~WRl~T~~flH~~~~Hl~fNml~l~~lG~~iE~~~G~ 171 (276)
T PRK10907 92 RAGPLTLGVMIACVVVFILMQILGDQTVMLWLAWPFDPSLKFELWRYFTHALLHFSLLHILFNLLWWWYLGGAVEKRLGS 171 (276)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhccHHHHHHHhccccccccCCcHHHHhHHHHhCCHHHHHHHHHHHHHHHHHHHHHHCh
Confidence 356799999999999999987754432222211 1246899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCceeechHHHHHHHHHHHHHHhhchhhHHHH-HHHHHHHHHHHHHHHHHHhhhhcc
Q 037250 172 FGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKIL-EVLILGQFVVEKVMEAAQASAGMS 250 (277)
Q Consensus 172 ~~~l~~yl~s~~~g~l~~~~~~~~~~~~~GaSG~ifgl~g~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~ 250 (277)
++++.+|++++++|+++++++.+. ..+|+||++||++|+......+.+.+... ....+...++.+..+..
T Consensus 172 ~~~l~l~l~s~i~~~~~~~~~~~~--~~gGaSGvVygL~g~~~~~~~~~p~~~~~lp~~~~~f~llwl~~g~~------- 242 (276)
T PRK10907 172 GKLIVITLISALLSGWVQSKFSGP--WFGGLSGVVYALMGYVWLRGERDPQSGIYLPRGLIAFALLWLVAGYF------- 242 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccc--hhhHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHH-------
Confidence 999999999999999998887643 47899999999999866544332322211 11111112222222111
Q ss_pred cceecCCCCchhhHHHHHHHHHHHHhC
Q 037250 251 GTFIGGYSVQSINHIAHLSGALFGVFL 277 (277)
Q Consensus 251 ~~~~~~~~~~~vs~~aHLgG~l~G~ll 277 (277)
+ ...++|++.||++|+++|+++
T Consensus 243 ~-----~~g~~Ian~AHlgGli~Gll~ 264 (276)
T PRK10907 243 D-----LFGMSIANAAHVAGLAVGLAM 264 (276)
T ss_pred H-----ccCcccHHHHHHHHHHHHHHH
Confidence 1 123689999999999999863
No 3
>COG0705 Membrane associated serine protease [Amino acid transport and metabolism]
Probab=99.91 E-value=1.2e-23 Score=186.55 Aligned_cols=171 Identities=27% Similarity=0.371 Sum_probs=125.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhhhhhhh---------hhh--hc-cCC--CcceeeecccccCChhHHHHHHHHHHHHH
Q 037250 97 SVNGVFWIILLNLGLYVADHVFQVRSIKS---------LYL--YH-NFP--AWYQFVTAAFCHANWNHLSSNLFFLYIFG 162 (277)
Q Consensus 97 ~~~~t~~lI~ln~~vfl~~~~~~~~~~~~---------~~~--~~-~~~--~~wrl~Ts~F~H~~~~HL~~Nm~~l~~~G 162 (277)
..+.+..++++|+++|+............ .+. .. ... |+||++|++|+|.|+.|+++||+.+|.+|
T Consensus 16 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~lit~~FlH~~~~Hll~N~~~l~~fg 95 (228)
T COG0705 16 APPVTLFLILLNILVFLLELVLGWSAIFLLTFLFRLFGLYPLNLLGALARDQLWRLITAIFLHAGFLHLLFNMLALWVFG 95 (228)
T ss_pred cchHHHHHHHHHHHHHHHHHHccchHHHHHHHhhhHHhhcchhhhccccccchHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 57899999999999999987665432211 110 11 112 89999999999999999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHhhcCCC-ceeechHHHHHHHHHHHHHHhhchhhHHHH---HHHHHHHHHHHH
Q 037250 163 KLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKN-AVSVGASGAVFGLFAISVLVKMSWDWRKIL---EVLILGQFVVEK 238 (277)
Q Consensus 163 ~~le~~~G~~~~l~~yl~s~~~g~l~~~~~~~~~-~~~~GaSG~ifgl~g~~~~l~~~~~~~~~~---~~~~~~~~~~~~ 238 (277)
..+|+..|+.+|+.+|+.+|+++++....+.+.. .+++||||+++|++|+++...+..+..... .......+.+..
T Consensus 96 ~~le~~~G~~~f~~~yl~~gl~~~~~~~~~~~~~~~~~~GASG~i~gllga~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 175 (228)
T COG0705 96 SNLERRLGTLRFLLFYLLSGLLAGLAQVLFGPKGGAPSLGASGAIFGLLGAYFLLFPFARILLLFLSLPRPALILILIWL 175 (228)
T ss_pred HHHHHHhchhHHHHHHHHHHHHHHHHHHHHcccccCcccchhHHHHHHHHHHHHHccccchhhhhccCchhHHHHHHHHH
Confidence 9999999999999999999999999999888765 478999999999999999876543322111 011111112222
Q ss_pred HHHHHHhhhhcccceecCCCCchhhHHHHHHHHHHHHh
Q 037250 239 VMEAAQASAGMSGTFIGGYSVQSINHIAHLSGALFGVF 276 (277)
Q Consensus 239 ~~~~~~~~~~l~~~~~~~~~~~~vs~~aHLgG~l~G~l 276 (277)
+...... ... ..++|++.||++|+++|++
T Consensus 176 ~~~~~~~------~~~---~~~~va~~aHl~G~i~G~l 204 (228)
T COG0705 176 LYSLFSG------AGS---FGPSVAWSAHLGGLIGGLL 204 (228)
T ss_pred HHHHHHH------hcC---CchHHHHHHHHHHHHHHHH
Confidence 2221111 000 1158999999999999986
No 4
>KOG2289 consensus Rhomboid family proteins [Signal transduction mechanisms]
Probab=99.82 E-value=1.7e-21 Score=179.37 Aligned_cols=87 Identities=29% Similarity=0.395 Sum_probs=81.3
Q ss_pred hhccCCCcceeeecccccCChhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhcCCCceeechHHHHH
Q 037250 128 LYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVF 207 (277)
Q Consensus 128 ~~~~~~~~wrl~Ts~F~H~~~~HL~~Nm~~l~~~G~~le~~~G~~~~l~~yl~s~~~g~l~~~~~~~~~~~~~GaSG~if 207 (277)
.....+|+||++||+|+|+|+.||.+||+.+..+|..+|+.+|.+|+..+|+.+++.|++++.++.+. ..++||||++|
T Consensus 112 ~~~~r~E~WRllTym~LHaGi~HL~~N~~~ql~iGi~LE~~~G~~RiglIYl~gg~aGSlls~l~d~~-~~sVGASggvf 190 (316)
T KOG2289|consen 112 KPVHRGELWRLLTYMWLHAGIFHLLLNMLSQLFIGIPLEQVHGFLRIGLIYLAGGVAGSLLSSLFDPN-SISVGASGGVF 190 (316)
T ss_pred ChhhhchhHHHHHHHHHhcCHHHHHHHHHHHHhccccHHhhcCceEEeeehhhhhhhhHHHHHHhccC-CceecccHHHH
Confidence 34467899999999999999999999999999999999999999999999999999999999999774 46999999999
Q ss_pred HHHHHHHH
Q 037250 208 GLFAISVL 215 (277)
Q Consensus 208 gl~g~~~~ 215 (277)
||+|+.+.
T Consensus 191 aLlgA~Ls 198 (316)
T KOG2289|consen 191 ALLGAHLS 198 (316)
T ss_pred HHHHHHHH
Confidence 99999875
No 5
>PF01694 Rhomboid: Rhomboid family; InterPro: IPR022764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of proteins contain serine peptidases belonging to the MEROPS peptidase family S54 (Rhomboid, clan ST). They are integral membrane proteins related to the Drosophila melanogaster (Fruit fly) rhomboid protein P20350 from SWISSPROT. Members of this family are found in archaea, bacteria and eukaryotes. The D. melanogaster rhomboid protease cleaves type-1 transmembrane domains using a catalytic triad composed of serine, histidine and asparagine contributed by different transmembrane domains. It cleaves the transmembrane proteins Spitz, Gurken and Keren within their transmembrane domains to release a soluble TGFalpha-like growth factor. Cleavage occurs in the Golgi, following translocation of the substrates from the endoplasmic reticulum membrane by Star, another transmembrane protein. The growth factors are then able to activate the epidermal growth factor receptor [, ]. Few substrates of mammalian rhomboid homologues have been determined, but rhomboid-like protein 2 (MEROPS S54.002) has been shown to cleave ephrin B3 []. Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. In Saccharomyces cerevisiae (Baker's yeast) the Pcp1 (MDM37) protein (MEROPS S54.007) is a mitochondrial endopeptidase required for the activation of cytochrome c peroxidase and for the processing of the mitochondrial dynamin-like protein Mgm1 [, ]. Mutations in Pcp1 result in cells have fragmented mitochondria, which have very few short tubulues []. This entry represents the 6 transmembrane helix rhomboid domain.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....
Probab=99.82 E-value=4e-21 Score=157.80 Aligned_cols=134 Identities=32% Similarity=0.532 Sum_probs=94.6
Q ss_pred cCCCcceeeecccccCChhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhcCCCceeechHHHHHHHH
Q 037250 131 NFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLF 210 (277)
Q Consensus 131 ~~~~~wrl~Ts~F~H~~~~HL~~Nm~~l~~~G~~le~~~G~~~~l~~yl~s~~~g~l~~~~~~~~~~~~~GaSG~ifgl~ 210 (277)
+++|+||++|++|.|.|+.|+++|++.++.+|..+|+.+|+++++.+|+.+++.+++...+..+.....+|+||+++|++
T Consensus 2 ~~~~~wrl~T~~f~h~~~~hl~~n~~~l~~~g~~lE~~~G~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~G~Sg~~~~l~ 81 (145)
T PF01694_consen 2 QNGQWWRLFTSPFVHANFLHLLFNLLALWFFGSLLERRLGSRRFLALYLLSGLLGSLLSLLFSPPNQPYVGASGAVFGLL 81 (145)
T ss_dssp GCC-TTHHHHGGG--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S-----SSHHHHHHHH
T ss_pred CCCcchhhhHHHHHccCHHHHHHHHHHHHHhhhhHhhhccchHHHHHHHHHHHhhhhccccccccccccCCCcccchHHH
Confidence 46899999999999999999999999999999999999999999999999999999999888776557899999999999
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccceecCCCCchhhHHHHHHHHHHHHh
Q 037250 211 AISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQSINHIAHLSGALFGVF 276 (277)
Q Consensus 211 g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vs~~aHLgG~l~G~l 276 (277)
++.+...++.+.+................. .+..+. .+++++.+|++|+++|++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~-~~~~~~~~hl~G~~~G~~ 135 (145)
T PF01694_consen 82 GAFLFLYPQNKKRLRFIYLALVVPIIVLVI-----------ILLLGF-IPNISFLGHLGGFLAGLL 135 (145)
T ss_dssp HHHHHHHHCCCCCS---HCCCCCCCCCCCH-----------HHCTSS-SSTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccchhhcchHHHHHHHHHHHH-----------HHHHHH-HHhHHHHHHHHHHHHHHH
Confidence 998876654322211100000000000000 001111 588999999999999986
No 6
>KOG2632 consensus Rhomboid family proteins [Function unknown]
Probab=99.61 E-value=1.4e-15 Score=135.52 Aligned_cols=170 Identities=16% Similarity=0.207 Sum_probs=119.5
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHhhhhh-hhhhhhhccCCCcceeeecccccCChhHHHHHHHHHHHHHHHHHHhhh-h
Q 037250 94 PKKSVNGVFWIILLNLGLYVADHVFQVRS-IKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEG-N 171 (277)
Q Consensus 94 ~~~~~~~t~~lI~ln~~vfl~~~~~~~~~-~~~~~~~~~~~~~wrl~Ts~F~H~~~~HL~~Nm~~l~~~G~~le~~~G-~ 171 (277)
.-+.+..|..+..++.++|++........ .........+.|.||++||+++|.+..|+++||+++|.+|..+|+.+| +
T Consensus 11 ~~~~p~~ts~~~~~~~~i~lv~~~~~i~~~~~l~~~~l~~~ql~RL~Ty~l~H~s~~hllfnmlaL~~~g~~fE~~~G~t 90 (258)
T KOG2632|consen 11 WMKIPLLTSIVVVLAILIYLVSFFPGIVEVLGLPSELLINWQLYRLITYALVHLSLPHLLFNMLALWPLGSQFERTHGTT 90 (258)
T ss_pred cccchHHHHHHHHHHHHHHHHhccchhhhHhcCCHHHhhhHHHHHHHHHHHHhccHHHHHHHHHHHHhchhHHHhhccce
Confidence 34456788888899999998877665441 111223346789999999999999999999999999999999999999 8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcC-----C---CceeechHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH-HHHH
Q 037250 172 FGLWLSYIFTGAAANFVSWLILP-----K---NAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEK-VMEA 242 (277)
Q Consensus 172 ~~~l~~yl~s~~~g~l~~~~~~~-----~---~~~~~GaSG~ifgl~g~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~ 242 (277)
.+++......++..+++.++... + ++..+|.||+.|++++....-.+... +.....+-+.....+. .+.+
T Consensus 91 ~~~l~~~~llalf~gIl~ll~~~~~~~~d~~~~~~a~G~s~v~Fam~~~~~~~sp~r~-~~~fg~~siP~~l~Pw~lLi~ 169 (258)
T KOG2632|consen 91 VRILMFTVLLALFSGILYLLAYHVFLLSDLVYVEGAIGFSGVLFAMMAVLEVQSPVRS-RSVFGLFSIPIVLAPWALLIA 169 (258)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhcccccccHHHHHHHHHHhhcCcccc-hhhcccccccHHHHHHHHHHH
Confidence 88888888889988887766542 1 23469999999999999776443211 1122221011111111 1111
Q ss_pred HHhhhhcccceecCCCCchhhHHHHHHHHHHHHh
Q 037250 243 AQASAGMSGTFIGGYSVQSINHIAHLSGALFGVF 276 (277)
Q Consensus 243 ~~~~~~l~~~~~~~~~~~~vs~~aHLgG~l~G~l 276 (277)
. .+..|+.|+.||++|++.|+.
T Consensus 170 ~------------~~lvp~aSFlghl~GllvG~a 191 (258)
T KOG2632|consen 170 T------------QILVPQASFLGHLCGLLVGYA 191 (258)
T ss_pred H------------HHHccCchHHHHHHHHHHHHH
Confidence 1 012389999999999999985
No 7
>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]
Probab=99.47 E-value=1.4e-14 Score=137.04 Aligned_cols=128 Identities=27% Similarity=0.484 Sum_probs=101.1
Q ss_pred ccCCCcceeeecccccCChhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhcCCCceeechHHHHHHH
Q 037250 130 HNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGL 209 (277)
Q Consensus 130 ~~~~~~wrl~Ts~F~H~~~~HL~~Nm~~l~~~G~~le~~~G~~~~l~~yl~s~~~g~l~~~~~~~~~~~~~GaSG~ifgl 209 (277)
..+.|.||++|+.|+|+++.|++..|.....+-+-+|+..|+.|...+|+++|+.||+++..+.|.. +.+|.||+-||+
T Consensus 446 e~PdQfYRL~~SLFlHagviH~~vSi~FQm~vmrdlEkL~g~~riAIiy~~SGitGNLASAIFlpY~-~eVgPa~sQ~Gi 524 (652)
T KOG2290|consen 446 EVPDQFYRLWLSLFLHAGVIHLLVSICFQMTVMRDLEKLAGWHRIAIIYFLSGITGNLASAIFLPYR-AEVGPAGSQFGI 524 (652)
T ss_pred CChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcchhhheeeecccccccchheeeeccc-cccCCcccccch
Confidence 3567999999999999999999999999999999999999999999999999999999999998764 589999999999
Q ss_pred HHHHHHHhh-ch-----hhHHHHHHHHHHHHHHHHHHHHHHhhhhcccceecCCCCchhhHHHHHHHHHHHHhC
Q 037250 210 FAISVLVKM-SW-----DWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQSINHIAHLSGALFGVFL 277 (277)
Q Consensus 210 ~g~~~~l~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vs~~aHLgG~l~G~ll 277 (277)
++...+--. +| +|+....++ +..+++. .| ..|.||++||+.|+++|+++
T Consensus 525 la~l~vEl~qs~~il~~~w~a~~~Li-----a~~L~L~--------iG------liPWiDN~aHlfG~i~GLl~ 579 (652)
T KOG2290|consen 525 LACLFVELFQSWQILERPWRAFFHLI-----ATLLVLC--------IG------LIPWIDNWAHLFGTIFGLLT 579 (652)
T ss_pred HHHHHHHHHhhhHhhhhHHHHHHHHH-----HHHHHHH--------hc------cccchhhHHHHHHHHHHHHH
Confidence 998776321 11 222222221 1111110 01 23889999999999999863
No 8
>KOG2980 consensus Integral membrane protease of the rhomboid family involved in different forms of regulated intramembrane proteolysis [Signal transduction mechanisms]
Probab=99.07 E-value=5.5e-11 Score=108.16 Aligned_cols=169 Identities=24% Similarity=0.315 Sum_probs=115.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhc---cCCCcceeeecccccCChhHHHHHHHHHHHHHH-HHHHhhhhHHH
Q 037250 99 NGVFWIILLNLGLYVADHVFQVRSIKSLYLYH---NFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGK-LVEEEEGNFGL 174 (277)
Q Consensus 99 ~~t~~lI~ln~~vfl~~~~~~~~~~~~~~~~~---~~~~~wrl~Ts~F~H~~~~HL~~Nm~~l~~~G~-~le~~~G~~~~ 174 (277)
.+.+.+++.|+.+|..|.+.+.......+... ..--.|.+++|.|.|.+.+|+..||+.++.+.. .+...+|...+
T Consensus 116 g~v~~ll~~n~~vf~lWrv~~~~~~~~~~mls~~~~~t~~w~i~~s~Fsh~~a~h~g~~~~~~~~y~~~a~~~~~~~~~~ 195 (310)
T KOG2980|consen 116 GVVFGLLIANAFVFTLWRVPQKQFTMIPWMLSRNAYKTGCWKIILSTFSHYSALHLGPNMLVLKSYLAGALKGSLGFSSF 195 (310)
T ss_pred cchhHHHHHHHHHHHHHHhcchhhhhhhHHhhcccccccceeEEeehhcchhHhhhcHHHHHHHHHhcccccCCcchhhc
Confidence 37899999999999999998776544444332 234568899999999999999999999999988 78888999999
Q ss_pred HHHHHHHHHHHHHHHHhhc-C--CCceeechHHHHHHHHHHHHHHhhchhhHHHHHHH--HHH-HHHHHHHHHHHHhhhh
Q 037250 175 WLSYIFTGAAANFVSWLIL-P--KNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVL--ILG-QFVVEKVMEAAQASAG 248 (277)
Q Consensus 175 l~~yl~s~~~g~l~~~~~~-~--~~~~~~GaSG~ifgl~g~~~~l~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~ 248 (277)
.++|+.++..|..+...-. + ...+.+||||+++++.++.+.+.|+-+.. +..+. ..+ ...+..+..+..
T Consensus 196 ~AlylSa~~~~~~i~~~~~v~~~~~gp~LGAsGav~ai~a~~~~lfP~~~~~-i~f~~~v~~ga~~~~~~i~~~~~---- 270 (310)
T KOG2980|consen 196 FALYLSAGVKGLFISVKDKVPTSWAGPSLGASGAVYAILALDCTLFPKTTLY-ILFVFPVPAGAGLAFKAIAAYDF---- 270 (310)
T ss_pred ccceeccccccceeEeeccccccccccccccchHHHHHHHHHhhcCcCccee-EEEeecccccchhHHHHHHHhhh----
Confidence 9999966666665443321 1 22457999999999999999887642211 10000 000 011111221111
Q ss_pred cccceecCCCCchhhHHHHHHHHHHHHh
Q 037250 249 MSGTFIGGYSVQSINHIAHLSGALFGVF 276 (277)
Q Consensus 249 l~~~~~~~~~~~~vs~~aHLgG~l~G~l 276 (277)
.+.+. .+.+-||.||++|-+.|..
T Consensus 271 -a~~~l---~~~~~n~~Ah~~gsl~Gv~ 294 (310)
T KOG2980|consen 271 -AGLIL---GWGFFNHAAHLSGSLFGVV 294 (310)
T ss_pred -cceee---ccccchhHhhhcchHHHHH
Confidence 11111 2356788899999999964
No 9
>PF08551 DUF1751: Eukaryotic integral membrane protein (DUF1751); InterPro: IPR013861 This entry is found in eukaryotic integral membrane proteins. Q12239 from SWISSPROT, a Saccharomyces cerevisiae (Baker's yeast) protein, has been shown to localise COP II vesicles [].
Probab=98.12 E-value=2.6e-06 Score=66.50 Aligned_cols=77 Identities=19% Similarity=0.270 Sum_probs=63.2
Q ss_pred CcceeeecccccCChhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhc-------C-CC---ceeech
Q 037250 134 AWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLIL-------P-KN---AVSVGA 202 (277)
Q Consensus 134 ~~wrl~Ts~F~H~~~~HL~~Nm~~l~~~G~~le~~~G~~~~l~~yl~s~~~g~l~~~~~~-------~-~~---~~~~Ga 202 (277)
.+|+++|+.|++.++..++.|.+.++..|+.+|+.+|+++++.......+.++++..... . .. .+.-|.
T Consensus 7 ~pWtl~T~~fve~~i~~~l~~~~~l~~~g~~lE~~WGs~E~lkFi~vv~~~tnl~~~~~~~~~y~i~~~~~~l~~~i~G~ 86 (99)
T PF08551_consen 7 YPWTLFTAGFVETNIIGLLFSLLTLFYGGRYLEPIWGSREFLKFILVVNVITNLLTFLLYLLLYAITGNESYLFVPISGF 86 (99)
T ss_pred ehHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHhcChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCceeEEEecCc
Confidence 679999999999999999999999999999999999999999999999988888754431 1 11 234566
Q ss_pred HHHHHHHH
Q 037250 203 SGAVFGLF 210 (277)
Q Consensus 203 SG~ifgl~ 210 (277)
.|.+.|++
T Consensus 87 ~~~~~g~l 94 (99)
T PF08551_consen 87 MGVLAGFL 94 (99)
T ss_pred HHhHhheE
Confidence 66666654
No 10
>PF04511 DER1: Der1-like family; InterPro: IPR007599 The endoplasmic reticulum (ER) of the yeast Saccharomyces cerevisiae (Baker's yeast) contains a proteolytic system able to selectively degrade misfolded lumenal secretory proteins. For examination of the components involved in this degradation process, mutants were isolated. They could be divided into four complementation groups. The mutations led to stabilisation of two different substrates for this process, and the classes were called der for degradation in the ER. DER1 was cloned by complementation of the der1-2 mutation. The DER1 gene codes for a novel, hydrophobic protein that is localized to the ER. Deletion of DER1 abolished degradation of the substrate proteins, suggesting that the function of the Der1 protein may be specifically required for the degradation process associated with the ER []. Interestingly this family seems distantly related to the Rhomboid family of membrane peptidases. This family may also mediate degradation of misfolded proteins.
Probab=97.96 E-value=0.00016 Score=63.06 Aligned_cols=95 Identities=17% Similarity=0.190 Sum_probs=65.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhh---hhhhhccCCCcceeeecccccCCh-hHHHHHHHHHHHHHHHHHHh-h-hh
Q 037250 98 VNGVFWIILLNLGLYVADHVFQVRSIK---SLYLYHNFPAWYQFVTAAFCHANW-NHLSSNLFFLYIFGKLVEEE-E-GN 171 (277)
Q Consensus 98 ~~~t~~lI~ln~~vfl~~~~~~~~~~~---~~~~~~~~~~~wrl~Ts~F~H~~~-~HL~~Nm~~l~~~G~~le~~-~-G~ 171 (277)
+++|...++..+++.++..+.-..... +.....++.|+||++|+.|.-++. .+.++|++.++..++.+|+. + ++
T Consensus 2 PpVTR~~~~~~~~~s~l~~~~~~~~~~l~~~~~~v~~~~q~WRl~Tsff~~g~~~~~~l~~~~~l~~~s~~LE~~~f~~~ 81 (197)
T PF04511_consen 2 PPVTRYWLISTVALSLLVSFGIISPYYLYFDWELVFKKFQIWRLFTSFFYFGPFSLNFLFNLYFLYQYSSSLEEGHFQGR 81 (197)
T ss_pred ChhHHHHHHHHHHHHHHHHCCCCCHHHeeECcHHHhhhcCceeeEEEEEEEcCCCHHHHHHHHHHHHHhhHhccCCCCCC
Confidence 578888888888887776543122111 111223568999999999986655 69999999999999999998 3 33
Q ss_pred -HHHHHHHHHHHHHHHHHHHhh
Q 037250 172 -FGLWLSYIFTGAAANFVSWLI 192 (277)
Q Consensus 172 -~~~l~~yl~s~~~g~l~~~~~ 192 (277)
.+|+...+.++..-.+++.+.
T Consensus 82 ~ady~~~ll~~~~~i~~~~~~~ 103 (197)
T PF04511_consen 82 SADYLWFLLFGASLILILSLLI 103 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 467666666655555555544
No 11
>KOG0858 consensus Predicted membrane protein [Function unknown]
Probab=96.85 E-value=0.0031 Score=56.22 Aligned_cols=96 Identities=10% Similarity=0.105 Sum_probs=70.6
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHhhhhhhh---hhhhhccCCCcceeeecccccCC-hhHHHHHHHHHHHHHHHHHHhh-
Q 037250 95 KKSVNGVFWIILLNLGLYVADHVFQVRSIK---SLYLYHNFPAWYQFVTAAFCHAN-WNHLSSNLFFLYIFGKLVEEEE- 169 (277)
Q Consensus 95 ~~~~~~t~~lI~ln~~vfl~~~~~~~~~~~---~~~~~~~~~~~wrl~Ts~F~H~~-~~HL~~Nm~~l~~~G~~le~~~- 169 (277)
...+++|......|++.-++..+.-..+.. ......++.|+||++|+.+.-+. -.|.++||+.++--++.+|+-.
T Consensus 10 ~~iPpVTR~~~~~~v~tt~~~~l~lIsP~~l~~~p~Lv~kk~QiWRliTs~lyfg~~gf~fl~n~~FlyrY~~~LE~g~f 89 (239)
T KOG0858|consen 10 LQIPPVTRYYTTACVVTTLLVRLDLISPFQLYLNPELVFKKFQIWRLITSFLYFGPFGFDFLMNLYFLYRYSSMLEEGSF 89 (239)
T ss_pred hcCChHHHHHHHHHHHHHHHHhhcccCchheEecHHHHHhHhHHHHhhhhhheeccccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345788999999999887776653222211 11233477899999999888876 6899999999999999999853
Q ss_pred --hhHHHHHHHHHHHHHHHHHHH
Q 037250 170 --GNFGLWLSYIFTGAAANFVSW 190 (277)
Q Consensus 170 --G~~~~l~~yl~s~~~g~l~~~ 190 (277)
.+.+|+.+.+.++++-.+.++
T Consensus 90 ~~rtadf~~mllf~~~l~~~~~~ 112 (239)
T KOG0858|consen 90 RGRTADFLYMLLFGAVLLTLTGL 112 (239)
T ss_pred CCchhHHHHHHHHHHHHHHHHHH
Confidence 236788888887776665444
No 12
>KOG4463 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.82 E-value=0.029 Score=50.84 Aligned_cols=61 Identities=18% Similarity=0.429 Sum_probs=52.6
Q ss_pred ccCCCcceeeecccccCChhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh
Q 037250 130 HNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWL 191 (277)
Q Consensus 130 ~~~~~~wrl~Ts~F~H~~~~HL~~Nm~~l~~~G~~le~~~G~~~~l~~yl~s~~~g~l~~~~ 191 (277)
..+.||||++-..|.-.+-..+.+-.+.+|.+ +.+||.+|+-+|..+.+.++..+-+..+.
T Consensus 46 ~~y~qywrlL~~qF~~~n~~e~~~~l~I~Y~f-R~~ERlLGShky~~fiv~s~~~~~l~~~i 106 (323)
T KOG4463|consen 46 EKYFQYWRLLMSQFAFSNTPELMFGLYILYYF-RVFERLLGSHKYSVFIVFSGTVSLLLEVI 106 (323)
T ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HHHHHHhccccceeehhHHHHHHHHHHHH
Confidence 35579999999999999999988888777776 89999999999999999998888876543
No 13
>KOG2890 consensus Predicted membrane protein [Function unknown]
Probab=94.62 E-value=0.11 Score=47.98 Aligned_cols=81 Identities=17% Similarity=0.267 Sum_probs=63.6
Q ss_pred CCcceeeecccccCChhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH-------HHhhcCCC----ceeec
Q 037250 133 PAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFV-------SWLILPKN----AVSVG 201 (277)
Q Consensus 133 ~~~wrl~Ts~F~H~~~~HL~~Nm~~l~~~G~~le~~~G~~~~l~~yl~s~~~g~l~-------~~~~~~~~----~~~~G 201 (277)
.+.|+++|+.|+-.+.+-.+.|.+.+.+-|+.+|+.+|+..++..|.+.-...+++ .+.+.... .+..|
T Consensus 65 ~~~WtliTs~fie~~vw~V~~sv~~L~v~G~~lEp~Wg~~e~lkff~ivn~~~~l~v~v~~~l~Y~it~n~v~L~~~i~G 144 (326)
T KOG2890|consen 65 FFPWTLITSGFIELNVWDVLVSVLTLSVGGKFLEPNWGSLELLKFFAIVNGSTTLVVLVPALLLYMITDNHVYLYIPIHG 144 (326)
T ss_pred hhhHHHHhcchhhhhHHHHHHHHHheeecceeeccCCCCHHHHHHHHHhhchhHHHHHHHHHHHHHHhcCceEEEEEecc
Confidence 47899999999999999999999999999999999999999999888754433332 22222221 23579
Q ss_pred hHHHHHHHHHHH
Q 037250 202 ASGAVFGLFAIS 213 (277)
Q Consensus 202 aSG~ifgl~g~~ 213 (277)
..|...|++.+.
T Consensus 145 ~~gilaGilVa~ 156 (326)
T KOG2890|consen 145 TTGILAGILVAW 156 (326)
T ss_pred chHHHHHHHHHH
Confidence 999999988764
No 14
>COG5291 Predicted membrane protein [Function unknown]
Probab=93.97 E-value=0.14 Score=46.10 Aligned_cols=73 Identities=18% Similarity=0.240 Sum_probs=49.5
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhh---hccCCCcceeeecccccCC-hhHHHHHHHHHHHHHHHHHHh
Q 037250 96 KSVNGVFWIILLNLGLYVADHVFQVRSIKSLYL---YHNFPAWYQFVTAAFCHAN-WNHLSSNLFFLYIFGKLVEEE 168 (277)
Q Consensus 96 ~~~~~t~~lI~ln~~vfl~~~~~~~~~~~~~~~---~~~~~~~wrl~Ts~F~H~~-~~HL~~Nm~~l~~~G~~le~~ 168 (277)
+.+|+|..+.++..++-++....-..++...|. ....-|+||++|+-.+-++ -...++|.+.++--.+.+|+-
T Consensus 18 ~IPPITRy~~ll~~a~til~~~~lvsPwy~ly~~pL~~k~~qiwRlfTs~~~~~~~~~d~~M~vyf~Y~yS~~LE~g 94 (313)
T COG5291 18 RIPPITRYMTLLISAVTILVYVDLVSPWYSLYYSPLFLKRLQIWRLFTSFLYFGKPTLDMFMHVYFLYRYSRMLEEG 94 (313)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHhhcCccceeeechhHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHhcc
Confidence 356777666666666655544432222222332 2466799999998666654 568999999999999999984
No 15
>COG0705 Membrane associated serine protease [Amino acid transport and metabolism]
Probab=41.57 E-value=43 Score=29.19 Aligned_cols=71 Identities=17% Similarity=-0.059 Sum_probs=50.6
Q ss_pred ccCCCcceeeecccccCChhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhcCCCceeechHHHHHHH
Q 037250 130 HNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGL 209 (277)
Q Consensus 130 ~~~~~~wrl~Ts~F~H~~~~HL~~Nm~~l~~~G~~le~~~G~~~~l~~yl~s~~~g~l~~~~~~~~~~~~~GaSG~ifgl 209 (277)
...+++|+++++.+.|....|...+... ..+...+++...+..+++....... ..++.++-+.|+
T Consensus 135 GASG~i~gllga~~~~~~~~~~~~~~~~-------------~~~~~~~~i~~~~~~~~~~~~~~~~--~~va~~aHl~G~ 199 (228)
T COG0705 135 GASGAIFGLLGAYFLLFPFARILLLFLS-------------LPRPALILILIWLLYSLFSGAGSFG--PSVAWSAHLGGL 199 (228)
T ss_pred chhHHHHHHHHHHHHHccccchhhhhcc-------------CchhHHHHHHHHHHHHHHHHhcCCc--hHHHHHHHHHHH
Confidence 3557888999998888888877776554 3345666777777777776665443 468889999998
Q ss_pred HHHHHH
Q 037250 210 FAISVL 215 (277)
Q Consensus 210 ~g~~~~ 215 (277)
++..+.
T Consensus 200 i~G~l~ 205 (228)
T COG0705 200 IGGLLL 205 (228)
T ss_pred HHHHHH
Confidence 866554
No 16
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=31.54 E-value=1.6e+02 Score=19.69 Aligned_cols=40 Identities=18% Similarity=0.260 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHH
Q 037250 150 HLSSNLFFLYIFGKLVEEEEGN-FGLWLSYIFTGAAANFVS 189 (277)
Q Consensus 150 HL~~Nm~~l~~~G~~le~~~G~-~~~l~~yl~s~~~g~l~~ 189 (277)
.++.++..-..+|..+++.+|+ ..+..+.++-|+.+++-.
T Consensus 9 ~~~~~i~~g~~~G~~lD~~~~t~p~~~~~g~llG~~~g~~~ 49 (55)
T PF09527_consen 9 TMAAPILVGFFLGYWLDKWFGTSPWFTLIGLLLGIAAGFYN 49 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Confidence 4566777778889999999888 555566666666666544
No 17
>PF03419 Peptidase_U4: Sporulation factor SpoIIGA This family belongs to family U4 of the peptidase classification.; InterPro: IPR005081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This group of peptidases belong to the MEROPS peptidase family U4 (SpoIIGA peptidase family, clan U-). Sporulation in bacteria such as Bacillus subtilis involves the formation of a polar septum, which divides the sporangium into a mother cell and a forespore. The sigma E factor, which is encoded within the spoIIG operon, is a cell-specific regulatory protein that directs gene transcription in the mother cell. Sigma E is synthesised as an inactive proprotein pro-sigma E, which is converted to the mature factor by the putative processing enzyme SpoIIGA []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis, 0030436 asexual sporulation
Probab=29.23 E-value=4.4e+02 Score=24.00 Aligned_cols=27 Identities=15% Similarity=0.433 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 037250 149 NHLSSNLFFLYIFGKLVEEEEGNFGLW 175 (277)
Q Consensus 149 ~HL~~Nm~~l~~~G~~le~~~G~~~~l 175 (277)
..+++|.+.||..++.+.+....+|.+
T Consensus 11 ~N~~md~~lL~~t~~~~~~~~~~~Rll 37 (293)
T PF03419_consen 11 VNFLMDYFLLWLTARLLKRRASRWRLL 37 (293)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence 467899999999999998888777744
No 18
>PF14898 DUF4491: Domain of unknown function (DUF4491)
Probab=22.86 E-value=97 Score=23.92 Aligned_cols=46 Identities=24% Similarity=0.354 Sum_probs=33.4
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHhhcCCCceeechHHHHHHHHHHHHHHh
Q 037250 165 VEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFAISVLVK 217 (277)
Q Consensus 165 le~~~G~~~~l~~yl~s~~~g~l~~~~~~~~~~~~~GaSG~ifgl~g~~~~l~ 217 (277)
.|.++|+ +.+.++++.|+....++..... +.. .++.|++|+.++..
T Consensus 26 ~EYyfg~-~~W~~FL~~Gi~~~~~Sl~~~~-----~~~-S~llgv~g~s~lWs 71 (94)
T PF14898_consen 26 GEYYFGT-RIWPIFLLAGIACIIASLFVSN-----VIW-SALLGVLGFSCLWS 71 (94)
T ss_pred EEEecCC-CcHHHHHHHHHHHHHHHHHHcc-----hHH-HHHHHHHHHHHHHh
Confidence 4778888 4789999999999888877743 223 34668888877643
No 19
>PLN02953 phosphatidate cytidylyltransferase
Probab=21.91 E-value=7.6e+02 Score=24.16 Aligned_cols=18 Identities=6% Similarity=-0.075 Sum_probs=14.5
Q ss_pred CchhhHHHHHHHHHHHHh
Q 037250 259 VQSINHIAHLSGALFGVF 276 (277)
Q Consensus 259 ~~~vs~~aHLgG~l~G~l 276 (277)
.|+-.++|-+||+++|++
T Consensus 301 SPkKTwEG~iGGil~~vl 318 (403)
T PLN02953 301 SPKKTWEGTFVGLVGCIA 318 (403)
T ss_pred CCCCeeeeehhHHHHHHH
Confidence 578889999888887754
Done!