Query 037250
Match_columns 277
No_of_seqs 197 out of 1671
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 17:30:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037250.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037250hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xov_A Rhomboid protease GLPG; 100.0 1.8E-27 6E-32 203.5 17.7 167 96-276 2-173 (181)
2 2nr9_A Protein GLPG homolog; i 99.9 7.3E-28 2.5E-32 208.4 10.3 167 95-276 6-178 (196)
3 3vr8_C Cytochrome B-large subu 15.2 2.9E+02 0.01 22.7 5.8 18 138-155 124-143 (188)
4 1zoy_C Large cytochrome bindin 7.5 2.5E+02 0.0085 21.7 2.7 20 136-155 89-110 (140)
5 2h88_C Succinate dehydrogenase 6.2 2.6E+02 0.009 21.6 2.2 20 136-155 89-110 (140)
6 2ju4_A GMP-PDE gamma, retinal 6.1 4E+02 0.014 18.8 2.8 28 47-75 14-41 (87)
7 2kxa_A Haemagglutinin HA2 chai 5.3 2.9E+02 0.01 15.8 1.3 6 270-275 4-9 (30)
8 3pnl_B PTS-dependent dihydroxy 3.5 3.9E+02 0.013 22.1 1.5 14 199-212 77-90 (211)
9 3cr3_A PTS-dependent dihydroxy 3.5 4E+02 0.014 21.7 1.4 13 199-211 75-87 (192)
10 1bts_A BAND 3 anion transport 3.5 3E+02 0.01 15.2 0.4 7 203-209 13-19 (26)
No 1
>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*
Probab=99.95 E-value=1.8e-27 Score=203.49 Aligned_cols=167 Identities=16% Similarity=0.138 Sum_probs=122.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhh----hccCCCcceeeecccccCChhHHHHHHHHHHHHHHHHHHhhhh
Q 037250 96 KSVNGVFWIILLNLGLYVADHVFQVRSIKSLYL----YHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGN 171 (277)
Q Consensus 96 ~~~~~t~~lI~ln~~vfl~~~~~~~~~~~~~~~----~~~~~~~wrl~Ts~F~H~~~~HL~~Nm~~l~~~G~~le~~~G~ 171 (277)
|..|+|..++++|+++|+++...+......... ....+||||++|++|+|.|+.|+++||+.++.+|+.+|+.+|+
T Consensus 2 ~~~pvt~~li~~~v~vf~~~~~~~~~~~~~~~~~~p~~~~~~~~wrl~T~~f~H~~~~Hl~~Nm~~l~~~g~~~E~~~G~ 81 (181)
T 2xov_A 2 RAGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGS 81 (181)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHSSCCSGGGTTCTTHHHHGGGCCCSHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhCcHHHHHhhcCChhhccCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhCh
Confidence 456899999999999999988764432112111 1256899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCceeechHHHHHHHHHHHHHHhhchhhHHHH-HHHHHHHHHHHHHHHHHHhhhhcc
Q 037250 172 FGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKIL-EVLILGQFVVEKVMEAAQASAGMS 250 (277)
Q Consensus 172 ~~~l~~yl~s~~~g~l~~~~~~~~~~~~~GaSG~ifgl~g~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~ 250 (277)
++++.+|+.+++.+++++++..++. ++||||++||++++.++.....+..+.. .........+.+.++. .
T Consensus 82 ~~fl~~yl~~~i~~~l~~~~~~~~~--~vGaSGai~gl~g~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~-------~ 152 (181)
T 2xov_A 82 GKLIVITLISALLSGYVQQKFSGPW--FGGLSGVVYALMGYVWLRGERDPQSGIYLQRGLIIFALIWIVAGW-------F 152 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSC--CCCSHHHHHHHHHHHHHHHHHCGGGSCCCCHHHHHHHHHHHHHHH-------T
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCC--ceeHHHHHHHHHHHHHHHHhhCcCceeeeHHHHHHHHHHHHHHHH-------H
Confidence 9999999999999999998887643 8999999999999876533222222110 0000001111111111 0
Q ss_pred cceecCCCCchhhHHHHHHHHHHHHh
Q 037250 251 GTFIGGYSVQSINHIAHLSGALFGVF 276 (277)
Q Consensus 251 ~~~~~~~~~~~vs~~aHLgG~l~G~l 276 (277)
+. ..+++|++||++|+++|++
T Consensus 153 ~~-----~~~~v~~~aHlgG~l~G~l 173 (181)
T 2xov_A 153 DL-----FGMSMANGAHIAGLAVGLA 173 (181)
T ss_dssp TS-----SCCSSCHHHHHHHHHHHHH
T ss_pred Hh-----ccccchHHHHHHHHHHHHH
Confidence 11 1368999999999999986
No 2
>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A
Probab=99.95 E-value=7.3e-28 Score=208.40 Aligned_cols=167 Identities=17% Similarity=0.281 Sum_probs=121.6
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh----ccCCCcceeeecccccCChhHHHHHHHHHHHHHHHHHHhhh
Q 037250 95 KKSVNGVFWIILLNLGLYVADHVFQVRSIKSLYLY----HNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEG 170 (277)
Q Consensus 95 ~~~~~~t~~lI~ln~~vfl~~~~~~~~~~~~~~~~----~~~~~~wrl~Ts~F~H~~~~HL~~Nm~~l~~~G~~le~~~G 170 (277)
.+..++|..++++|+++|+++...+.......... ...+||||++|++|+|.|+.|+++||+.++.+|+.+|+.+|
T Consensus 6 ~~~~pvt~~li~~~v~vfll~~~~~~~~~~~~~~~~p~~~~~~~~wrl~T~~flH~~~~Hl~~Nm~~l~~~G~~lE~~~G 85 (196)
T 2nr9_A 6 AQQGKITLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEEQDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTFG 85 (196)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHSCCCSGGGGGCTTHHHHGGGCCSSHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccccHHHHHHHHHHHHHHHHHHcCcHHHHHhhcCCHhhcccCCcHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHC
Confidence 35578999999999999999887643222221111 25689999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhcCCCceeechHHHHHHHHHHHHHHhhchhhHH-HH-HHHHHHHHHHHHHHHHHHhhhh
Q 037250 171 NFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFAISVLVKMSWDWRK-IL-EVLILGQFVVEKVMEAAQASAG 248 (277)
Q Consensus 171 ~~~~l~~yl~s~~~g~l~~~~~~~~~~~~~GaSG~ifgl~g~~~~l~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~ 248 (277)
+++++.+|+.+++.++++++++.++. ++||||++||++|+.++.....+... +. .... ...+.+.++..
T Consensus 86 ~~~~l~~yl~~~~~~~l~~~~~~~~~--~vGaSGai~gl~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~----- 156 (196)
T 2nr9_A 86 SVKLLMLYVVASAITGYVQNYVSGPA--FFGLSGVVYAVLGYVFIRDKLNHHLFDLPEGFFT--MLLVGIALGFI----- 156 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSC--CCCSHHHHHHHHHHHHHHHHSSTTSCCCCCSSTT--TTTTTTTHHHH-----
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCC--eeeHHHHHHHHHHHHHHHHHhcchhhcchHHHHH--HHHHHHHHHHH-----
Confidence 99999999999999999998887653 89999999999998765332212110 00 0000 00011111110
Q ss_pred cccceecCCCCchhhHHHHHHHHHHHHh
Q 037250 249 MSGTFIGGYSVQSINHIAHLSGALFGVF 276 (277)
Q Consensus 249 l~~~~~~~~~~~~vs~~aHLgG~l~G~l 276 (277)
+. ...+++|+.||+||+++|++
T Consensus 157 --~~----~~~~~v~~~aHlgG~l~G~l 178 (196)
T 2nr9_A 157 --SP----LFGVEMGNAAHISGLIVGLI 178 (196)
T ss_dssp --SC----SSCCTTCHHHHHHHHHHHHH
T ss_pred --Hh----ccCCCccHHHHHHHHHHHHH
Confidence 00 02358999999999999986
No 3
>3vr8_C Cytochrome B-large subunit; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_C*
Probab=15.16 E-value=2.9e+02 Score=22.74 Aligned_cols=18 Identities=6% Similarity=0.115 Sum_probs=11.8
Q ss_pred eeecccccC--ChhHHHHHH
Q 037250 138 FVTAAFCHA--NWNHLSSNL 155 (277)
Q Consensus 138 l~Ts~F~H~--~~~HL~~Nm 155 (277)
+..+.+.|. |+.||+.++
T Consensus 124 l~~a~~yH~~nGIRHLiwD~ 143 (188)
T 3vr8_C 124 IAFPIAFHTLNGIRFIGFDM 143 (188)
T ss_pred HHHHHHHHHHhhHHHHHHHh
Confidence 444555664 788888764
No 4
>1zoy_C Large cytochrome binding protein, FAD-binding protein; succinate, ubiquinone oxidoreductase, mitochondrial respiratory complex II; HET: FAD HEM EPH UQ1; 2.40A {Sus scrofa} PDB: 1zp0_C* 3abv_C* 3ae1_C* 3ae2_C* 3ae3_C* 3ae4_C* 3ae5_C* 3ae6_C* 3ae7_C* 3ae8_C* 3ae9_C* 3aea_C* 3aeb_C* 3aec_C* 3aed_C* 3aee_C* 3aef_C* 3aeg_C* 3sfd_C* 3sfe_C*
Probab=7.53 E-value=2.5e+02 Score=21.71 Aligned_cols=20 Identities=25% Similarity=0.386 Sum_probs=13.1
Q ss_pred ceeeecccccC--ChhHHHHHH
Q 037250 136 YQFVTAAFCHA--NWNHLSSNL 155 (277)
Q Consensus 136 wrl~Ts~F~H~--~~~HL~~Nm 155 (277)
|-+..+.+.|. |+.|++.++
T Consensus 89 ~~~~~al~yH~~nGiRHL~wD~ 110 (140)
T 1zoy_C 89 FGIVFPLMYHTWNGIRHLIWDL 110 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhHHHHHHHh
Confidence 33455666775 788887773
No 5
>2h88_C Succinate dehydrogenase cytochrome B, large subun; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 2h89_C* 1yq3_C* 1yq4_C* 2fbw_C* 2wqy_C*
Probab=6.25 E-value=2.6e+02 Score=21.58 Aligned_cols=20 Identities=20% Similarity=0.336 Sum_probs=13.0
Q ss_pred ceeeecccccC--ChhHHHHHH
Q 037250 136 YQFVTAAFCHA--NWNHLSSNL 155 (277)
Q Consensus 136 wrl~Ts~F~H~--~~~HL~~Nm 155 (277)
|-+..+.+.|. |+.|++.++
T Consensus 89 ~~~~~al~yH~~nGiRHL~wD~ 110 (140)
T 2h88_C 89 FALVFPLSYHTWNGIRHLVWDM 110 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhHHHHHHHh
Confidence 33455566775 788887763
No 6
>2ju4_A GMP-PDE gamma, retinal ROD rhodopsin-sensitive CGMP 3',5'-cyclic phosphodiesterase subunit gamma...; intrinsic disordered protein; HET: RCY; NMR {Bos taurus}
Probab=6.07 E-value=4e+02 Score=18.84 Aligned_cols=28 Identities=14% Similarity=0.164 Sum_probs=15.1
Q ss_pred CCCCCCCccccCCCCCcccccceeEeccC
Q 037250 47 SPKLNLPIKLRPLRHPSLTLRSRLVCNMS 75 (277)
Q Consensus 47 ~p~~~~~~~~~~~~~p~~~~~~~~~~~~~ 75 (277)
..+..+|+.- .--.|.|+||...+++..
T Consensus 14 ~~~~~gPttp-rkGPPKFKQR~TRqFKSK 41 (87)
T 2ju4_A 14 TRVMGGPCTP-RKGPPKCKQRQTRQCKSK 41 (87)
T ss_dssp SSSSCSSCCC-SSSSCCCSSCSSSSCCSS
T ss_pred CccCCCCCCC-CCCCCccchhhccccccC
Confidence 3333455542 223577888886655443
No 7
>2kxa_A Haemagglutinin HA2 chain peptide; fusion peptide, viral protein, immune system; NMR {Influenza a virus}
Probab=5.29 E-value=2.9e+02 Score=15.76 Aligned_cols=6 Identities=50% Similarity=0.899 Sum_probs=2.6
Q ss_pred HHHHHH
Q 037250 270 GALFGV 275 (277)
Q Consensus 270 G~l~G~ 275 (277)
|+++|+
T Consensus 4 GAIAGf 9 (30)
T 2kxa_A 4 GAIAGF 9 (30)
T ss_dssp HHHHHH
T ss_pred hhhhhh
Confidence 444443
No 8
>3pnl_B PTS-dependent dihydroxyacetone kinase, ADP-bindin DHAL; structural genomics, montreal-kingston bacterial structural initiative, BSGI; HET: ADP; 2.20A {Escherichia coli} SCOP: a.208.1.0 PDB: 2btd_A*
Probab=3.52 E-value=3.9e+02 Score=22.06 Aligned_cols=14 Identities=57% Similarity=0.871 Sum_probs=11.1
Q ss_pred eechHHHHHHHHHH
Q 037250 199 SVGASGAVFGLFAI 212 (277)
Q Consensus 199 ~~GaSG~ifgl~g~ 212 (277)
.-|.||++||.+-.
T Consensus 77 ~gG~SG~L~~~~f~ 90 (211)
T 3pnl_B 77 VGGASGPLFGTFFI 90 (211)
T ss_dssp TCTTHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 45999999998643
No 9
>3cr3_A PTS-dependent dihydroxyacetone kinase, ADP- binding subunit DHAL; transient protein-protein complex transferase complex PTS- dependent dihydroxyacetone kinase; HET: ADP; 2.10A {Lactococcus lactis subsp} SCOP: a.208.1.1
Probab=3.47 E-value=4e+02 Score=21.72 Aligned_cols=13 Identities=38% Similarity=0.529 Sum_probs=10.7
Q ss_pred eechHHHHHHHHH
Q 037250 199 SVGASGAVFGLFA 211 (277)
Q Consensus 199 ~~GaSG~ifgl~g 211 (277)
.-|.||++||.+-
T Consensus 75 ~gG~SG~L~~~~f 87 (192)
T 3cr3_A 75 VGGASGPLYGSAF 87 (192)
T ss_dssp CCSTHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 4599999999763
No 10
>1bts_A BAND 3 anion transport protein; transmembrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 1btt_A
Probab=3.45 E-value=3e+02 Score=15.17 Aligned_cols=7 Identities=43% Similarity=0.918 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 037250 203 SGAVFGL 209 (277)
Q Consensus 203 SG~ifgl 209 (277)
.|.+|++
T Consensus 13 ~Gi~f~l 19 (26)
T 1bts_A 13 QGILFAL 19 (26)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444444
Done!