BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037251
(463 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2H84|A Chain A, Crystal Structure Of The C-terminal Type Iii Polyketide
Synthase (pks Iii) Domain Of 'steely1' (a Type I/iii Pks
Hybrid From Dictyostelium)
pdb|2H84|B Chain B, Crystal Structure Of The C-terminal Type Iii Polyketide
Synthase (pks Iii) Domain Of 'steely1' (a Type I/iii Pks
Hybrid From Dictyostelium)
Length = 374
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 108/237 (45%), Gaps = 28/237 (11%)
Query: 203 LRSNIFSYNLGGMGCSAGLISIDLAQKLLQVEPNCYALVVSTENITLGWYVGNDRSMLLT 262
L ++ +L MGC AGL S+ A L + P LVV TE +L + + ++
Sbjct: 143 LNKDVERVSLNLMGCLAGLSSLRTAASLAKASPRNRILVVCTEVCSLHFSNTDGGDQMVA 202
Query: 263 NCLFRVGGAAILLXXXXXXXXXXKYQLVRTL-RSHQVDDNSYNCIMQKEDEFQHVGVKIS 321
+ +F G AA ++ Y+++ ++ RS +N+ + E E ++G+ S
Sbjct: 203 SSIFADGSAAYIIGCNPRIEETPLYEVMCSINRSFPNTENAM--VWDLEKEGWNLGLDAS 260
Query: 322 KNLMVVAGEALKTHITALGPLVLPMSEQLLFLATSVARKIFKMKINLYIPDIKLAFEHFC 381
+ +V G ++ + L + + L +T+++ K + F
Sbjct: 261 --IPIVIGSGIEAFVDTL------LDKAKLQTSTAISAKDCE----------------FL 296
Query: 382 IHTGGRGVLDGIEKNLQLNEWHMEPSRMTLNRFGNTSSSSVCTVVWRALKTINLNPT 438
IHTGG+ +L IE +L ++ + + + +GN SS+SV V+ A K+ +L PT
Sbjct: 297 IHTGGKSILMNIENSLGIDPKQTKNTWDVYHAYGNMSSASVIFVMDHARKSKSL-PT 352
>pdb|1Z1E|A Chain A, Crystal Structure Of Stilbene Synthase From Arachis
Hypogaea
pdb|1Z1F|A Chain A, Crystal Structure Of Stilbene Synthase From Arachis
Hypogaea (Resveratrol-Bound Form)
Length = 390
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/253 (22%), Positives = 107/253 (42%), Gaps = 49/253 (19%)
Query: 177 TEGVIIGAVD-ELLAKTGVKPKAIGILLRSNIFSYNLGGMGCSAGLISIDLAQKLLQVEP 235
T GV + VD EL+ G+ P ++ Y + GC AG + LA+ L +
Sbjct: 133 TSGVALPGVDYELIVLLGLDP---------SVKRYMMYHQGCFAGGTVLRLAKDLAENNK 183
Query: 236 NCYALVVSTENITLGWYVGNDRSM--LLTNCLFRVGGAAILLXXXXXXXXXXK-YQLVRT 292
+ L+V +EN ++ + ++ M L+ LF G AAI++ +++V T
Sbjct: 184 DARVLIVCSENTSVTFRGPSETDMDSLVGQALFADGAAAIIIGSDPVPEVENPLFEIVST 243
Query: 293 LRSHQVDDNSYNCIMQKEDEFQHVGVK--ISKNLMVVAGEALKTHIT-ALGPLVLPMSEQ 349
Q+ NS+ I + VG+ ++K++ + + + ++ A PL +
Sbjct: 244 --DQQLVPNSHGAI---GGLLREVGLTFYLNKSVPDIISQNINDALSKAFDPLGISDYNS 298
Query: 350 LLFLATSVARKIFKMKINLYIPDIKLAFEHFCIHTGGRGVLDGIEKNLQLNEWHMEPSRM 409
+ ++A H GGR +LD +E+ + L M+ +R
Sbjct: 299 IFWIA----------------------------HPGGRAILDQVEEKVNLKPEKMKATRD 330
Query: 410 TLNRFGNTSSSSV 422
L+ +GN SS+ V
Sbjct: 331 VLSNYGNMSSACV 343
>pdb|1QLV|A Chain A, Pyrone Synthase (Pys) From Gerbera Hybrida
pdb|1QLV|B Chain B, Pyrone Synthase (Pys) From Gerbera Hybrida
pdb|1EE0|A Chain A, 2-Pyrone Synthase Complexed With Acetoacetyl-Coa
pdb|1EE0|B Chain B, 2-Pyrone Synthase Complexed With Acetoacetyl-Coa
Length = 402
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 2/97 (2%)
Query: 330 EALKTHITALGPLVLPMSEQLLFLATSVARKIFKMKINLYIPDIKLAFEHFCIHTGGRGV 389
+A+K H+ G + L +A ++ K L I D F + +H GGR +
Sbjct: 257 KAMKLHLREGGLTFQLHRDVPLMVAKNIENAAEKALSPLGITDWNSVF--WMVHPGGRAI 314
Query: 390 LDGIEKNLQLNEWHMEPSRMTLNRFGNTSSSSVCTVV 426
LD +E+ L L E + SR L+ +GN S+ V ++
Sbjct: 315 LDQVERKLNLKEDKLRASRHVLSEYGNLISACVLFII 351
>pdb|1XES|A Chain A, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|B Chain B, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|C Chain C, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|D Chain D, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XET|A Chain A, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|B Chain B, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|C Chain C, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|D Chain D, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
Length = 413
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%)
Query: 380 FCIHTGGRGVLDGIEKNLQLNEWHMEPSRMTLNRFGNTSSSSV 422
+ +H GGR +LD +E L L+ + P+R ++ +GN SS+ V
Sbjct: 323 WVVHPGGRAILDRVEAKLNLDPTKLIPTRHVMSEYGNMSSACV 365
>pdb|1U0U|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|C Chain C, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|D Chain D, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|E Chain E, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|F Chain F, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
Length = 397
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%)
Query: 380 FCIHTGGRGVLDGIEKNLQLNEWHMEPSRMTLNRFGNTSSSSV 422
+ +H GGR +LD +E L L+ + P+R ++ +GN SS+ V
Sbjct: 307 WVVHPGGRAILDRVEAKLNLDPTKLIPTRHVMSEYGNMSSACV 349
>pdb|2P0U|A Chain A, Crystal Structure Of Marchantia Polymorpha
Stilbenecarboxylate Synthase 2 (Stcs2)
pdb|2P0U|B Chain B, Crystal Structure Of Marchantia Polymorpha
Stilbenecarboxylate Synthase 2 (Stcs2)
Length = 413
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 380 FCIHTGGRGVLDGIEKNLQLNEWHMEPSRMTLNRFGNTSSSSVCTVVWR 428
+ +H GG +LD +E L+L + + SR L+ +GN SS+SV V+ R
Sbjct: 318 WAVHPGGPAILDQVEAKLELEKGKFQASRDILSDYGNMSSASVLFVLDR 366
>pdb|3AWJ|A Chain A, Crystal Structure Of The Huperzia Serrata Polyketide
Synthase 1 Complexed With Coa-Sh
pdb|3AWJ|B Chain B, Crystal Structure Of The Huperzia Serrata Polyketide
Synthase 1 Complexed With Coa-Sh
pdb|3AWK|A Chain A, Crystal Structure Of The Polyketide Synthase 1 From
Huperzia Serrata
Length = 402
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 28/47 (59%)
Query: 380 FCIHTGGRGVLDGIEKNLQLNEWHMEPSRMTLNRFGNTSSSSVCTVV 426
+ +H GG +LD IE L L+ M+ SR L +GN SS+SV V+
Sbjct: 313 WAVHPGGPAILDQIEAKLGLSTDKMQASRDVLASYGNMSSASVLFVL 359
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 383 HTGGRGVLDGIEKNLQLNEWHMEPSRMTLNRFGNTSSSSV 422
H GG +LD +E L L++ +E +R L+ +GN SS+ V
Sbjct: 890 HPGGPAILDAVEAKLNLDKKKLEATRHVLSEYGNMSSACV 929
>pdb|1CGZ|A Chain A, Chalcone Synthase From Alfalfa Complexed With Resveratrol
pdb|1CGK|A Chain A, Chalcone Synthase From Alfalfa Complexed With Naringenin
Length = 389
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/223 (21%), Positives = 85/223 (38%), Gaps = 33/223 (14%)
Query: 203 LRSNIFSYNLGGMGCSAGLISIDLAQKLLQVEPNCYALVVSTENITLGWYVGNDRSM--L 260
LR + Y + GC AG + LA+ L + LVV +E + + +D + L
Sbjct: 150 LRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEVTAVTFRGPSDTHLDSL 209
Query: 261 LTNCLFRVGGAAILLXXXXXXXXXXK-YQLVRTLRSHQVDDNSYNCIMQKEDEFQHVGVK 319
+ LF G AA+++ +++V T ++ D
Sbjct: 210 VGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEG----------------- 252
Query: 320 ISKNLMVVAGEALKTHITALGPLVLPMSEQLLFLATSVARKIFKMKINLYIPDIKLAFEH 379
A+ H+ G + + ++ ++ + + + L I D F
Sbjct: 253 -----------AIDGHLREAGLTFHLLKDVPGIVSKNITKALVEAFEPLGISDYNSIF-- 299
Query: 380 FCIHTGGRGVLDGIEKNLQLNEWHMEPSRMTLNRFGNTSSSSV 422
+ H GG +LD +E+ L L M +R L+ +GN SS+ V
Sbjct: 300 WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACV 342
>pdb|1TEE|A Chain A, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|B Chain B, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|C Chain C, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|D Chain D, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
Length = 393
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 91/222 (40%), Gaps = 48/222 (21%)
Query: 215 MGCSAGLISIDLAQKLLQVEPNCYALVVSTENITLGWYVGNDRSMLLTNCLFRVGGAAIL 274
MGC+A + ++ A ++ P ALVV E ++ +D + ++ + LF G AA++
Sbjct: 173 MGCAAAMNALGTATNYVRAHPAMKALVVCIELFSVNAVFADDINDVVIHSLFGDGCAALV 232
Query: 275 LXXXXXXXXXXKYQLVRTLRSHQVDDNSYNCIMQKEDEFQHVGV--KISKNL--MVVAGE 330
+ ++V Q+ DN+ + I+ H G+ ++S+NL + +G
Sbjct: 233 IGASQVQEKLEPGKVVVRSSFSQLLDNTEDGIVLG---VNHNGITCELSENLPGYIFSG- 288
Query: 331 ALKTHITALGPLVLPMSEQLLFLATSVARKIFKMKINLYIPDIKLAFEHFCIHTGGRGVL 390
V P+ ++L+ L I DI L + IH GG ++
Sbjct: 289 ------------VAPVVTEMLW------------DNGLQISDIDL----WAIHPGGPKII 320
Query: 391 D------GIEKNLQLNEWHMEPSRMTLNRFGNTSSSSVCTVV 426
+ GI L W + L RFGN S S+ V+
Sbjct: 321 EQSVRSLGISAELAAQSWDV------LARFGNMLSVSLIFVL 356
>pdb|1TED|A Chain A, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|B Chain B, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|C Chain C, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|D Chain D, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
Length = 393
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 91/222 (40%), Gaps = 48/222 (21%)
Query: 215 MGCSAGLISIDLAQKLLQVEPNCYALVVSTENITLGWYVGNDRSMLLTNCLFRVGGAAIL 274
MGC+A + ++ A ++ P ALVV E ++ +D + ++ + LF G AA++
Sbjct: 173 MGCAAAMNALGTATNYVRAHPAMKALVVCIELCSVNAVFADDINDVVIHSLFGDGCAALV 232
Query: 275 LXXXXXXXXXXKYQLVRTLRSHQVDDNSYNCIMQKEDEFQHVGV--KISKNL--MVVAGE 330
+ ++V Q+ DN+ + I+ H G+ ++S+NL + +G
Sbjct: 233 IGASQVQEKLEPGKVVVRSSFSQLLDNTEDGIVLG---VNHNGITCELSENLPGYIFSG- 288
Query: 331 ALKTHITALGPLVLPMSEQLLFLATSVARKIFKMKINLYIPDIKLAFEHFCIHTGGRGVL 390
V P+ ++L+ L I DI L + IH GG ++
Sbjct: 289 ------------VAPVVTEMLW------------DNGLQISDIDL----WAIHPGGPKII 320
Query: 391 D------GIEKNLQLNEWHMEPSRMTLNRFGNTSSSSVCTVV 426
+ GI L W + L RFGN S S+ V+
Sbjct: 321 EQSVRSLGISAELAAQSWDV------LARFGNMLSVSLIFVL 356
>pdb|1I89|A Chain A, Chalcone Synthase (G256l)
pdb|1I89|B Chain B, Chalcone Synthase (G256l)
Length = 389
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 383 HTGGRGVLDGIEKNLQLNEWHMEPSRMTLNRFGNTSSSSV 422
H GG +LD +E+ L L M +R L+ +GN SS+ V
Sbjct: 303 HPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACV 342
>pdb|1I88|A Chain A, Chalcone Synthase (G256v)
pdb|1I88|B Chain B, Chalcone Synthase (G256v)
Length = 389
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 383 HTGGRGVLDGIEKNLQLNEWHMEPSRMTLNRFGNTSSSSV 422
H GG +LD +E+ L L M +R L+ +GN SS+ V
Sbjct: 303 HPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACV 342
>pdb|1I8B|A Chain A, Chalcone Synthase (g256f)
pdb|1I8B|B Chain B, Chalcone Synthase (g256f)
Length = 389
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 383 HTGGRGVLDGIEKNLQLNEWHMEPSRMTLNRFGNTSSSSV 422
H GG +LD +E+ L L M +R L+ +GN SS+ V
Sbjct: 303 HPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACV 342
>pdb|1I86|A Chain A, Chalcone Synthase, G256a Mutant
Length = 389
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 383 HTGGRGVLDGIEKNLQLNEWHMEPSRMTLNRFGNTSSSSV 422
H GG +LD +E+ L L M +R L+ +GN SS+ V
Sbjct: 303 HPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACV 342
>pdb|1CML|A Chain A, Chalcone Synthase From Alfalfa Complexed With Malonyl-Coa
pdb|1D6F|A Chain A, Chalcone Synthase C164a Mutant
Length = 389
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 383 HTGGRGVLDGIEKNLQLNEWHMEPSRMTLNRFGNTSSSSV 422
H GG +LD +E+ L L M +R L+ +GN SS+ V
Sbjct: 303 HPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACV 342
>pdb|1BI5|A Chain A, Chalcone Synthase From Alfalfa
Length = 389
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 383 HTGGRGVLDGIEKNLQLNEWHMEPSRMTLNRFGNTSSSSV 422
H GG +LD +E+ L L M +R L+ +GN SS+ V
Sbjct: 303 HPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACV 342
>pdb|1JWX|A Chain A, Chalcone Synthase--F215s Mutant
Length = 389
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 383 HTGGRGVLDGIEKNLQLNEWHMEPSRMTLNRFGNTSSSSV 422
H GG +LD +E+ L L M +R L+ +GN SS+ V
Sbjct: 303 HPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACV 342
>pdb|1CHW|A Chain A, Chalcone Synthase From Alfalfa Complexed With Hexanoyl-Coa
pdb|1CHW|B Chain B, Chalcone Synthase From Alfalfa Complexed With Hexanoyl-Coa
Length = 389
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 383 HTGGRGVLDGIEKNLQLNEWHMEPSRMTLNRFGNTSSSSV 422
H GG +LD +E+ L L M +R L+ +GN SS+ V
Sbjct: 303 HPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACV 342
>pdb|1BQ6|A Chain A, Chalcone Synthase From Alfalfa With Coenzyme A
Length = 388
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 383 HTGGRGVLDGIEKNLQLNEWHMEPSRMTLNRFGNTSSSSV 422
H GG +LD +E+ L L M +R L+ +GN SS+ V
Sbjct: 302 HPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACV 341
>pdb|1U0V|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Of Specificity Of Type Iii Polyketide
Synthases: 18xchs Structure
pdb|1U0V|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Of Specificity Of Type Iii Polyketide
Synthases: 18xchs Structure
pdb|1U0W|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|C Chain C, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|D Chain D, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
Length = 393
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 383 HTGGRGVLDGIEKNLQLNEWHMEPSRMTLNRFGNTSSSSV 422
H GG +LD +E+ L L M +R L+ +GN SS+ V
Sbjct: 307 HPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACV 346
>pdb|2D3M|A Chain A, Pentaketide Chromone Synthase Complexed With Coenzyme A
pdb|2D3M|B Chain B, Pentaketide Chromone Synthase Complexed With Coenzyme A
Length = 406
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 383 HTGGRGVLDGIEKNLQLNEWHMEPSRMTLNRFGNTSSSSV 422
H GGR +LD +E L+L +R L +GN S+SV
Sbjct: 319 HPGGRAILDQVEAKLKLRPEKFRAARTVLWDYGNMVSASV 358
>pdb|2D51|A Chain A, Pentaketide Chromone Synthase (M207g Mutant)
pdb|2D51|B Chain B, Pentaketide Chromone Synthase (M207g Mutant)
pdb|2D52|A Chain A, Pentaketide Chromone Synthase (M207g Mutant Complexed With
Coa)
pdb|2D52|B Chain B, Pentaketide Chromone Synthase (M207g Mutant Complexed With
Coa)
Length = 406
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 383 HTGGRGVLDGIEKNLQLNEWHMEPSRMTLNRFGNTSSSSV 422
H GGR +LD +E L+L +R L +GN S+SV
Sbjct: 319 HPGGRAILDQVEAKLKLRPEKFRAARTVLWDYGNMVSASV 358
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 309 KEDEFQHVGVKISKNLMVVAGEALKTHITALGPLVLPMSEQLLFL 353
KE E H G KI +++ A E++ +H+T LGP P S++ +L
Sbjct: 416 KEYEIHH-GKKILYDILAFAKESVNSHVTTLGPQNFPASDKEPWL 459
>pdb|3ALE|A Chain A, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|B Chain B, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|C Chain C, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|D Chain D, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
Length = 416
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 49/225 (21%), Positives = 87/225 (38%), Gaps = 34/225 (15%)
Query: 203 LRSNIFSYNLGGMGCSAGLISIDLAQKLLQVEPNCYALVVSTENITLGWYVGNDRS---M 259
LR ++ L GC AG ++ LA+ L + LVV+ E +TL ++ G D
Sbjct: 174 LRPSVRRTMLHLNGCFAGCAALRLAKDLAENSRGARVLVVAAE-LTLMYFTGPDEGCFRT 232
Query: 260 LLTNCLFRVGGAAILLXXXXXXXXXXKYQLVRTLRSHQVDDNSYNCIMQKEDEFQHVGVK 319
LL LF G AA+++ +++V + + S + + + E + GV
Sbjct: 233 LLVQGLFGDGAAAVIVGADADDVERPLFEIVSA--AQTIIPESDHALNMRFTERRLDGV- 289
Query: 320 ISKNLMVVAGEALKTHITALGPLVLPMSEQLLFLATSVARKIFKMKINLYIPDIKLAFEH 379
L + L + +V R + M L D +
Sbjct: 290 ------------LGRQVPGL-------------IGDNVERCLLDMFGPLLGGDGGGGWND 324
Query: 380 --FCIHTGGRGVLDGIEKNLQLNEWHMEPSRMTLNRFGNTSSSSV 422
+ +H G ++D ++ L L + SR L+ +GN S ++V
Sbjct: 325 LFWAVHPGSSTIMDQVDAALGLEPGKLAASRRVLSDYGNMSGATV 369
>pdb|3OIT|A Chain A, Crystal Structure Of Curcuminoid Synthase Cus From Oryza
Sativa
pdb|3OIT|B Chain B, Crystal Structure Of Curcuminoid Synthase Cus From Oryza
Sativa
Length = 387
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 203 LRSNIFSYNLGGMGCSAGLISIDLAQKLLQVEPNCYALVVSTENITLGWYVGNDRS---M 259
LR ++ L GC AG ++ LA+ L + LVV+ E +TL ++ G D
Sbjct: 144 LRPSVRRTMLHLNGCFAGCAALRLAKDLAENSRGARVLVVAAE-LTLMYFTGPDEGCFRT 202
Query: 260 LLTNCLFRVGGAAILL 275
LL LF G AA+++
Sbjct: 203 LLVQGLFGDGAAAVIV 218
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 380 FCIHTGGRGVLDGIEKNLQLNEWHMEPSRMTLNRFGNTSSSSV 422
+ +H G ++D ++ L L + SR L+ +GN S ++V
Sbjct: 297 WAVHPGSSTIMDQVDAALGLEPGKLAASRRVLSDYGNMSGATV 339
>pdb|1U0M|A Chain A, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene
Synthase (Thns) From Streptomyces Coelicolor A3(2): A
Bacterial Type Iii Polyketide Synthase (Pks) Provides
Insights Into Enzymatic Control Of Reactive Polyketide
Intermediates
pdb|1U0M|B Chain B, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene
Synthase (Thns) From Streptomyces Coelicolor A3(2): A
Bacterial Type Iii Polyketide Synthase (Pks) Provides
Insights Into Enzymatic Control Of Reactive Polyketide
Intermediates
Length = 382
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 89/216 (41%), Gaps = 38/216 (17%)
Query: 215 MGCSAGLISIDLAQKLLQVEPNCYALVVSTENITLGWYVGNDRSM--LLTNCLFRVGGAA 272
+GC+AG +I+ A P AL+V+ E +L Y D + LL N LF G AA
Sbjct: 144 LGCAAGGAAINRAHDFCTAYPEANALIVACEFCSL-CYQPTDLGVGSLLCNGLFGDGIAA 202
Query: 273 ILLXXXXXXXXXXKYQLVRTLRSHQVDDNSYNCIMQKEDEFQHVGVKISKNLMVVAGEAL 332
++ VR R + SY ++ K +++ VK + + + +
Sbjct: 203 AVVRGRGGTG-------VRLER-----NGSY--LIPKTEDWIMYDVK-ATGFHFLLDKRV 247
Query: 333 KTHITALGPLVLPMSEQLLFLATSVARKIFKMKINLYIPDIKLAFEHFCIHTGGRGVLDG 392
+ L P + ++ + + A+ ++ YI +H GG +LD
Sbjct: 248 PATMEPLAPALKELAGEHGWDASD---------LDFYI-----------VHAGGPRILDD 287
Query: 393 IEKNLQLNEWHMEPSRMTLNRFGNTSSSSVCTVVWR 428
+ L+++ SR TL +GN +S+ V + R
Sbjct: 288 LSTFLEVDPHAFRFSRATLTEYGNIASAVVLDALRR 323
>pdb|1D6H|A Chain A, Chalone Synthase (N336a Mutant Complexed With Coa)
Length = 387
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 383 HTGGRGVLDGIEKNLQLNEWHMEPSRMTLNRFGNTSSSSV 422
H GG +LD +E+ L L M +R L+ +G SS+ V
Sbjct: 301 HPGGPAILDQVEQKLALKPEKMNATREVLSEYGAMSSACV 340
>pdb|1D6I|A Chain A, Chalcone Synthase (H303q Mutant)
pdb|1D6I|B Chain B, Chalcone Synthase (H303q Mutant)
Length = 388
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 385 GGRGVLDGIEKNLQLNEWHMEPSRMTLNRFGNTSSSSV 422
GG +LD +E+ L L M +R L+ +GN SS+ V
Sbjct: 304 GGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACV 341
>pdb|3EUO|A Chain A, Crystal Structure Of A Fungal Type Iii Polyketide
Synthase, Oras
pdb|3EUO|B Chain B, Crystal Structure Of A Fungal Type Iii Polyketide
Synthase, Oras
pdb|3EUT|A Chain A, X-Ray Crystal Structure Of A Type Iii Pentaketide Synthase
From Neurospora Crassa
pdb|3EUT|B Chain B, X-Ray Crystal Structure Of A Type Iii Pentaketide Synthase
From Neurospora Crassa
pdb|3EUT|C Chain C, X-Ray Crystal Structure Of A Type Iii Pentaketide Synthase
From Neurospora Crassa
pdb|3EUT|D Chain D, X-Ray Crystal Structure Of A Type Iii Pentaketide Synthase
From Neurospora Crassa
Length = 379
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 380 FCIHTGGRGVLDGIEKNLQLNEWHMEPSRMTLNRFGNTSSSSVCTVVWR 428
+ +H GG +L G E + L HM S GN+SS+++ +V+ R
Sbjct: 293 WAMHPGGATILSGAESAMGLTPEHMRASYDRYINHGNSSSATIFSVLNR 341
>pdb|3EUQ|A Chain A, X-Ray Structural Of A Type Iii Pentaketide Synthase From
Neurospora Crassa
pdb|3EUQ|B Chain B, X-Ray Structural Of A Type Iii Pentaketide Synthase From
Neurospora Crassa
pdb|3EUQ|C Chain C, X-Ray Structural Of A Type Iii Pentaketide Synthase From
Neurospora Crassa
pdb|3EUQ|D Chain D, X-Ray Structural Of A Type Iii Pentaketide Synthase From
Neurospora Crassa
Length = 379
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 380 FCIHTGGRGVLDGIEKNLQLNEWHMEPSRMTLNRFGNTSSSSVCTVVWR 428
+ +H GG +L G E + L HM S GN+SS+++ +V+ R
Sbjct: 293 WAMHPGGATILSGAESAMGLTPEHMRASYDRYINHGNSSSATIFSVLNR 341
>pdb|3OV3|A Chain A, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
pdb|3OV3|B Chain B, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
pdb|3OV3|C Chain C, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
pdb|3OV3|D Chain D, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
Length = 393
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Query: 331 ALKTHITALGPLVLPMSEQLLFLATSVARKIFKMKINLYIPDIKLAFEHFCIHTGGRGVL 390
A+ H+ A G +++ +A ++ R + + L + + F + H G ++
Sbjct: 253 AVGGHLRAFGWTFYFLNQLPAIIADNLGRSLERALAPLGVREWNDVF--WVAHPGNWAII 310
Query: 391 DGIEKNLQLNEWHMEPSRMTLNRFGNTSSSSVCTVV 426
D IE LQL+ + +R +GN S++V V+
Sbjct: 311 DAIEAKLQLSPDKLSTARHVFTEYGNMQSATVYFVM 346
>pdb|3E1H|A Chain A, Crystal Structure Of A Type Iii Polyketide Synthase
Pksiiinc From Neurospora Crassa
pdb|3E1H|B Chain B, Crystal Structure Of A Type Iii Polyketide Synthase
Pksiiinc From Neurospora Crassa
Length = 465
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 380 FCIHTGGRGVLDGIEKNLQLNEWHMEPSRMTLNRF---GNTSSSSVCTVVWR 428
+ +H GG +L G E + L HM R + +R+ GN+SS+++ +V+ R
Sbjct: 322 WAMHPGGATILSGAESAMGLTPEHM---RASYDRYINHGNSSSATIFSVLNR 370
>pdb|3OV2|A Chain A, Curcumin Synthase 1 From Curcuma Longa
pdb|3OV2|B Chain B, Curcumin Synthase 1 From Curcuma Longa
pdb|3OV2|C Chain C, Curcumin Synthase 1 From Curcuma Longa
pdb|3OV2|D Chain D, Curcumin Synthase 1 From Curcuma Longa
Length = 393
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 2/96 (2%)
Query: 331 ALKTHITALGPLVLPMSEQLLFLATSVARKIFKMKINLYIPDIKLAFEHFCIHTGGRGVL 390
A+ H+ A G +++ +A ++ R + + L + + F + H G ++
Sbjct: 253 AVGGHLRAFGWTFYFLNQLPAIIADNLGRSLERALAPLGVREWNDVF--WVAHPGNWAII 310
Query: 391 DGIEKNLQLNEWHMEPSRMTLNRFGNTSSSSVCTVV 426
D IE LQL+ + +R +GN S++V V+
Sbjct: 311 DAIEAKLQLSPDKLSTARHVFTEYGNMQSATVYFVM 346
>pdb|3OPY|B Chain B, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|D Chain D, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|F Chain F, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|H Chain H, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
Length = 941
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 380 FCIHTGGRGVLDGIEKNLQLNEWH 403
FCIH G G++ G EK ++ +WH
Sbjct: 215 FCIHEGYEGLVRGGEKYIKETQWH 238
>pdb|3A5Q|A Chain A, Benzalacetone Synthase From Rheum Palmatum
pdb|3A5Q|B Chain B, Benzalacetone Synthase From Rheum Palmatum
pdb|3A5R|A Chain A, Benzalacetone Synthase From Rheum Palmatum Complexed With
4-Coumaroyl- Primed Monoketide Intermediate
pdb|3A5R|B Chain B, Benzalacetone Synthase From Rheum Palmatum Complexed With
4-Coumaroyl- Primed Monoketide Intermediate
Length = 387
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 383 HTGGRGVLDGIEKNLQLNEWHMEPSRMTLNRFGNTSSSSV 422
H GG +LD + + L + ++ +R L +GN SS++V
Sbjct: 299 HPGGPAILDQVTAKVGLEKEKLKVTRQVLKDYGNMSSATV 338
>pdb|3A5S|A Chain A, Benzalacetone Synthase (I207lL208F)
pdb|3A5S|B Chain B, Benzalacetone Synthase (I207lL208F)
Length = 387
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 383 HTGGRGVLDGIEKNLQLNEWHMEPSRMTLNRFGNTSSSSV 422
H GG +LD + + L + ++ +R L +GN SS++V
Sbjct: 299 HPGGPAILDQVTAKVGLEKEKLKVTRQVLKDYGNMSSATV 338
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,555,239
Number of Sequences: 62578
Number of extensions: 478348
Number of successful extensions: 1031
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 980
Number of HSP's gapped (non-prelim): 51
length of query: 463
length of database: 14,973,337
effective HSP length: 102
effective length of query: 361
effective length of database: 8,590,381
effective search space: 3101127541
effective search space used: 3101127541
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)