BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037252
(138 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A6H619|PHRF1_MOUSE PHD and RING finger domain-containing protein 1 OS=Mus musculus
GN=Phrf1 PE=1 SV=2
Length = 1682
Score = 33.9 bits (76), Expect = 0.31, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 39 EEEP--CIKCNRQ-RDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYC 88
EE+P C C R R++ LL+C GC H CL ++ V ++CP C
Sbjct: 182 EEDPTFCEVCGRSDREDRLLLCD--GCDAGYHMECLDPPLQEVPVDEWFCPEC 232
>sp|Q9P1Y6|PHRF1_HUMAN PHD and RING finger domain-containing protein 1 OS=Homo sapiens
GN=PHRF1 PE=1 SV=3
Length = 1649
Score = 33.9 bits (76), Expect = 0.34, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 39 EEEP--CIKCNRQ-RDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYC 88
EE+P C C R R++ LL+C GC H CL ++ V ++CP C
Sbjct: 180 EEDPTFCEVCGRSDREDRLLLCD--GCDAGYHMECLDPPLQEVPVDEWFCPEC 230
>sp|B2S1L1|RUVB_BORHD Holliday junction ATP-dependent DNA helicase RuvB OS=Borrelia
hermsii (strain DAH) GN=ruvB PE=3 SV=1
Length = 352
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 49 QRDENLL---VCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKCELMRTKELRK 102
++D N+L + G P+ V +S G D + +FY PY K + RT RK
Sbjct: 265 EQDRNILRSLILKFKGGPVGVETLAISVGETADSLEDFYEPYLILKGLIERTSRGRK 321
>sp|Q0SPE2|RUVB_BORAP Holliday junction ATP-dependent DNA helicase RuvB OS=Borrelia
afzelii (strain PKo) GN=ruvB PE=3 SV=1
Length = 347
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 49 QRDENLL---VCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKCELMRTKELRK 102
++D N+L + +G P+ V +S G D + +FY PY K + RT RK
Sbjct: 265 EQDRNILRSLILKFNGGPVGVDTLAISVGETADSLEDFYEPYLIMKGFISRTHRGRK 321
>sp|P70828|RUVB_BORBU Holliday junction ATP-dependent DNA helicase RuvB OS=Borrelia
burgdorferi (strain ATCC 35210 / B31 / CIP 102532 / DSM
4680) GN=ruvB PE=3 SV=1
Length = 347
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 49 QRDENLL---VCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKCELMRTKELRK 102
++D N+L + +G P+ V +S G D + +FY PY K + RT RK
Sbjct: 265 EQDRNILRSLILKFNGGPVGVDTLAISVGETADSLEDFYEPYLIMKGFISRTHRGRK 321
>sp|Q96EK2|PF21B_HUMAN PHD finger protein 21B OS=Homo sapiens GN=PHF21B PE=2 SV=1
Length = 531
Score = 32.7 bits (73), Expect = 0.60, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 7/59 (11%)
Query: 40 EEPCIKCNRQRDENLLVCSQSG-------CPISVHENCLSCGVKFDDVGNFYCPYCWYK 91
E+PC K DE+ C + CP + H +CL +K G + CP C K
Sbjct: 341 EDPCWKNEITHDEHCAACKRGANLQPCGTCPGAYHLSCLEPPLKTAPKGVWVCPRCQQK 399
>sp|Q662Z0|RUVB_BORGA Holliday junction ATP-dependent DNA helicase RuvB OS=Borrelia
garinii (strain PBi) GN=ruvB PE=3 SV=1
Length = 347
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 49 QRDENLL---VCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKCELMRTKELRK 102
++D N+L + +G P+ V +S G D + +FY PY K + RT RK
Sbjct: 265 EQDRNILRSLILKFNGGPVGVDTLAISVGETADSLEDFYEPYLIMKGFINRTHRGRK 321
>sp|Q9UK53|ING1_HUMAN Inhibitor of growth protein 1 OS=Homo sapiens GN=ING1 PE=1 SV=2
Length = 422
Score = 32.3 bits (72), Expect = 0.86, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 46 CNRQRDENLLVCSQSGCPIS-VHENCLSCGVKFDDVGNFYCPYCWYKCELMRTKELRKKA 104
CN+ ++ C CPI H +C+ G+ G +YCP C + E K L K
Sbjct: 358 CNQVSYGEMIGCDNDECPIEWFHFSCV--GLNHKPKGKWYCPKCRGENEKTMDKALEKSK 415
Query: 105 KE 106
KE
Sbjct: 416 KE 417
>sp|C0NTM8|SLX1_AJECG Structure-specific endonuclease subunit SLX1 OS=Ajellomyces
capsulata (strain G186AR / H82 / ATCC MYA-2454 / RMSCC
2432) GN=SLX1 PE=3 SV=1
Length = 421
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 28/93 (30%), Positives = 38/93 (40%), Gaps = 20/93 (21%)
Query: 37 FLEEEPCIKCN------RQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFY------ 84
LE E I C R++ + +CS S C + H CLS F + F
Sbjct: 216 LLESEEAIDCGVCKQRLNPRNDMIAICSHSLCRCASHLLCLS--AHFLEAAGFIGKLIPK 273
Query: 85 ---CPYCWYKCE---LMRTKELRKKAKETKKQL 111
CP C K E LM+ LR + +E K+L
Sbjct: 274 EGTCPACLGKLEWPTLMKEITLRLRGQEEVKRL 306
>sp|O43918|AIRE_HUMAN Autoimmune regulator OS=Homo sapiens GN=AIRE PE=1 SV=1
Length = 545
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Query: 40 EEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKCELMRTKE 99
E+ C C RD L+C GCP + H CLS ++ G + C C +E
Sbjct: 296 EDECAVC---RDGGELICC-DGCPRAFHLACLSPPLREIPSGTWRCSSCLQAT----VQE 347
Query: 100 LRKKAKETKKQ 110
++ +A+E + Q
Sbjct: 348 VQPRAEEPRPQ 358
>sp|Q61T02|KDM5_CAEBR Lysine-specific demethylase rbr-2 OS=Caenorhabditis briggsae
GN=rbr-2 PE=3 SV=2
Length = 1482
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 38 LEEEPCIKCNRQRDEN-LLVCSQSGCPISVHENCLSCGVKFDDV--GNFYCPYC 88
+E+ C+ CN +DE+ LL+C GC H C C D+V G + CP C
Sbjct: 320 IEQVYCVSCNEGKDEDLLLLCDIEGCNSGRHTYC--CDPVLDEVPEGEWRCPKC 371
>sp|Q22516|CHD3_CAEEL Chromodomain-helicase-DNA-binding protein 3 homolog
OS=Caenorhabditis elegans GN=chd-3 PE=2 SV=2
Length = 1787
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 31/77 (40%), Gaps = 19/77 (24%)
Query: 19 HIENHGGSGRSGDFTDVDFLEEEP-------CIKCNRQRDENLLVCSQSGCPISVHENCL 71
H E HG DV +EEEP C C + N+L+C CP S H C+
Sbjct: 308 HCEEHG--------PDVLIVEEEPAKANMDYCRIC--KETSNILLCDT--CPSSYHAYCI 355
Query: 72 SCGVKFDDVGNFYCPYC 88
+ G + CP C
Sbjct: 356 DPPLTEIPEGEWSCPRC 372
>sp|Q63625|PHRF1_RAT PHD and RING finger domain-containing protein 1 OS=Rattus
norvegicus GN=Phrf1 PE=1 SV=2
Length = 1685
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 43 CIKCNRQ-RDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYC 88
C C R R++ LL+C GC H CL ++ V ++CP C
Sbjct: 191 CEVCGRSDREDRLLLCD--GCDAGYHMECLDPPLQEVPVDEWFCPEC 235
>sp|O16102|CHD3_DROME Chromodomain-helicase-DNA-binding protein 3 OS=Drosophila
melanogaster GN=Chd3 PE=2 SV=3
Length = 892
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 15/85 (17%)
Query: 37 FLEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCW------- 89
F +EE C C+ D L+C S CP H CLS +K G++ CP C
Sbjct: 32 FRDEEYCKVCSDGGD---LLCCDS-CPSVYHRTCLSPPLKSIPKGDWICPRCIPLPGKAE 87
Query: 90 ----YKCELMRTKELRKKAKETKKQ 110
++ L R+ ELR E +++
Sbjct: 88 KILSWRWALDRSVELRTSKGEKRRE 112
>sp|Q96L73|NSD1_HUMAN Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20
specific OS=Homo sapiens GN=NSD1 PE=1 SV=1
Length = 2696
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 53 NLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKCEL 94
L+ C + GCP H +CL+ + G + CP W++C++
Sbjct: 2129 QLVSCKKPGCPKVYHADCLNLTKR--PAGKWECP--WHQCDI 2166
>sp|Q04DN6|ACCD_OENOB Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta
OS=Oenococcus oeni (strain ATCC BAA-331 / PSU-1) GN=accD
PE=3 SV=1
Length = 289
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 6/97 (6%)
Query: 47 NRQRDENLLVCSQSGCPISVHENCLSCGVKF--DDVGNF-YCPYCWYKCELMRTKELRKK 103
++Q+ + LL + P + C C +F GNF CP C Y L K LR
Sbjct: 11 SKQQTDKLLNRYLTQIPSGIWRECPRCHSRFYYRRFGNFDVCPECGYGFRLTARKRLRML 70
Query: 104 AKETKKQLACFI--DSKSFSGDKKKENCRTDKGNELN 138
K+ + A + D SF G +K R K +LN
Sbjct: 71 TKDAVEWDADLVTKDPLSFPGYSEKLQ-RAQKITKLN 106
>sp|O88491|NSD1_MOUSE Histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20
specific OS=Mus musculus GN=Nsd1 PE=1 SV=1
Length = 2588
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Query: 53 NLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKCEL 94
L+ C + GCP H +CL+ + G + CP W++C++
Sbjct: 2027 QLVSCKKPGCPKVYHADCLNLTKR--PAGKWECP--WHQCDV 2064
>sp|Q5UXY8|VATA_HALMA V-type ATP synthase alpha chain OS=Haloarcula marismortui (strain
ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=atpA
PE=3 SV=1
Length = 586
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
Query: 9 SAYNDDEIGIHIENHGGSGRSGDFTDV--DFLEEEPCIKCNRQRDENLLVCSQSGCPISV 66
+ + D +I +++ G R + T+V DF E E N D L+ + S P++
Sbjct: 252 AKWADADIVVYV---GCGERGNEMTEVIEDFPELEDPTTGNALMDRTCLIANTSNMPVAA 308
Query: 67 HENCLSCGVK----FDDVG 81
E+C+ G+ F D+G
Sbjct: 309 RESCVYTGITIAEYFRDMG 327
>sp|Q9FPS0|UBP27_ARATH Ubiquitin carboxyl-terminal hydrolase 27 OS=Arabidopsis thaliana
GN=UBP27 PE=2 SV=1
Length = 494
Score = 29.6 bits (65), Expect = 5.0, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 11/72 (15%)
Query: 60 SGCPISVHENCLSCGVKFDDVGNFYCPYCWYKCELMRTKELRKKAKETKKQLACFIDSKS 119
SGC + E+CL + + V N++C CW+ L + E +K +C
Sbjct: 272 SGCTL---EHCLKKFLNTEKVENYFCYRCWHGAALKYLSVIGAAETEIEKLRSC------ 322
Query: 120 FSGDKKKENCRT 131
G + + +C+T
Sbjct: 323 --GGEDQCDCKT 332
>sp|Q9QXV3|ING1_MOUSE Inhibitor of growth protein 1 OS=Mus musculus GN=Ing1 PE=2 SV=1
Length = 279
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Query: 28 RSGDFTDVDFLEEEP--CIKCNRQRDENLLVCSQSGCPIS-VHENCLSCGVKFDDVGNFY 84
R D+ EP C+ CN+ ++ C CPI H +C+ G+ G +Y
Sbjct: 196 REASPADLPIDPNEPTYCL-CNQVSYGEMIGCDNDECPIEWFHFSCV--GLNHKPKGKWY 252
Query: 85 CPYCWYKCELMRTKELRKKAKE 106
CP C + E K L K KE
Sbjct: 253 CPKCRGESEKTMDKALEKSKKE 274
>sp|A7STV9|SLX1_NEMVE Structure-specific endonuclease subunit SLX1 homolog
OS=Nematostella vectensis GN=v1g174298 PE=3 SV=1
Length = 270
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 39 EEEPCIKC--NRQRDENLLVCSQSGCPISVHENCLS 72
+E CIKC + DE L+ C +SGC ++ H CL+
Sbjct: 175 HKEKCIKCLDVIKIDEKLIRCPKSGCTMTAHMFCLA 210
>sp|P55198|AF17_HUMAN Protein AF-17 OS=Homo sapiens GN=MLLT6 PE=1 SV=2
Length = 1093
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 12/67 (17%)
Query: 43 CIKCNRQRDEN------LLVCSQSGCPISVHENC-----LSCGVKFDDVGNF-YCPYCWY 90
C C Q E+ + C++ GC + H C L C + +V N YC YC Y
Sbjct: 120 CYICEEQGRESKAASGACMTCNRHGCRQAFHVTCAQMAGLLCEEEVLEVDNVKYCGYCKY 179
Query: 91 KCELMRT 97
M+T
Sbjct: 180 HFSKMKT 186
>sp|Q23541|KDM5_CAEEL Lysine-specific demethylase rbr-2 OS=Caenorhabditis elegans
GN=rbr-2 PE=1 SV=2
Length = 1477
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 43 CIKCNRQRDEN-LLVCSQSGCPISVHENCLSCGVKFDDV--GNFYCPYC 88
C+ CN +DE+ LL+C GC H C C D+V G + CP C
Sbjct: 322 CVACNEGKDEDLLLLCDIDGCNNGRHTYC--CDPVLDEVPEGEWRCPKC 368
>sp|Q96KR4|LMLN_HUMAN Leishmanolysin-like peptidase OS=Homo sapiens GN=LMLN PE=2 SV=2
Length = 655
Score = 29.3 bits (64), Expect = 6.7, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 8/41 (19%)
Query: 56 VCSQSG--CPISVHENCLSCGVKFDDVGNFYCPYCWYKCEL 94
+CS++G P+S+ N G D GN CP CW CEL
Sbjct: 570 LCSRAGQVLPVSIQMN----GWIHD--GNLLCPSCWDFCEL 604
>sp|Q9VMJ7|KDM5_DROME Lysine-specific demethylase lid OS=Drosophila melanogaster GN=lid
PE=1 SV=1
Length = 1838
Score = 29.3 bits (64), Expect = 7.2, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 35 VDFLEEEPCIKCNR-QRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYC 88
VD L + C CNR +E++L+C GC S H CL + G + CP C
Sbjct: 443 VDPLMKYICHICNRGDVEESMLLCD--GCDDSYHTFCLLPPLTSIPKGEWLCPRC 495
>sp|Q03012|SPP1_YEAST COMPASS component SPP1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SPP1 PE=1 SV=1
Length = 353
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 61 GCPISVHENCLSCGVKFDD-VGNFYCPYC 88
GC H CL +F D V +FYCPYC
Sbjct: 41 GCDDWFHFTCLHIPEQFKDLVFSFYCPYC 69
>sp|P34447|YM2A_CAEEL Uncharacterized protein F54F2.2, isoform a OS=Caenorhabditis
elegans GN=F54F2.2/F54F2.3/F54F2.4 PE=2 SV=2
Length = 867
Score = 29.3 bits (64), Expect = 7.8, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 43 CIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKCELM 95
C N D L+ C C ++VH+ C G++ G ++C C +M
Sbjct: 11 CADENGWTDNPLIYCDGENCEVAVHQGCY--GIQEVPEGEWFCAKCTKASAMM 61
>sp|O88379|BAZ1A_MOUSE Bromodomain adjacent to zinc finger domain protein 1A OS=Mus musculus
GN=Baz1a PE=1 SV=3
Length = 1555
Score = 29.3 bits (64), Expect = 8.0, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 43 CIKCNRQRD-ENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYC 88
C C ++ D EN+++C GC H C+ +K G+++CP C
Sbjct: 1152 CKICRKKGDAENMVLCD--GCDRGHHTYCVRPKLKAVPDGDWFCPEC 1196
>sp|Q9NRL2|BAZ1A_HUMAN Bromodomain adjacent to zinc finger domain protein 1A OS=Homo sapiens
GN=BAZ1A PE=1 SV=2
Length = 1556
Score = 29.3 bits (64), Expect = 8.5, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 43 CIKCNRQRD-ENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYC 88
C C ++ D EN+++C GC H C+ +K G+++CP C
Sbjct: 1151 CKICRKKGDAENMVLCD--GCDRGHHTYCVRPKLKTVPEGDWFCPEC 1195
>sp|O54826|AF10_MOUSE Protein AF-10 OS=Mus musculus GN=Mllt10 PE=1 SV=2
Length = 1068
Score = 28.9 bits (63), Expect = 8.5, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 43 CIKCNRQRD--ENLLV-CSQSGCPISVHENCLSCGVKFDDVGNFYCPYC 88
C C+ +R EN LV C GC ++VH+ C G+ G ++C C
Sbjct: 25 CCVCSDERGWAENPLVYCDGHGCSVAVHQACY--GIVQVPTGPWFCRKC 71
>sp|Q5VYJ5|CJ112_HUMAN MAM and LDL-receptor class A domain-containing protein C10orf112
OS=Homo sapiens GN=C10orf112 PE=2 SV=3
Length = 1473
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 9 SAYNDDEIGIHIENHGGSGRSGDFTDVDFLEEEPCIKCNRQRDENLLVCSQSG-CPISVH 67
S + D++ + E G G+ GD D + E C+ + E L V +G CP+
Sbjct: 725 SLFGDEDFQLKFEGRVGKGQRGDIALDDIVLTENCLSLHDSVQEELAVPLPTGFCPLGYR 784
Query: 68 E 68
E
Sbjct: 785 E 785
>sp|P60622|FOG1_DANRE Zinc finger protein ZFPM1 (Fragment) OS=Danio rerio GN=zfpm1 PE=1
SV=1
Length = 224
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 61 GCPISVHE--NCLSCGVKFDDVGNFY 84
G P SVH+ C C + F+++ NFY
Sbjct: 26 GSPASVHKGATCFECDITFNNINNFY 51
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,582,737
Number of Sequences: 539616
Number of extensions: 2335180
Number of successful extensions: 5949
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 75
Number of HSP's that attempted gapping in prelim test: 5931
Number of HSP's gapped (non-prelim): 91
length of query: 138
length of database: 191,569,459
effective HSP length: 103
effective length of query: 35
effective length of database: 135,989,011
effective search space: 4759615385
effective search space used: 4759615385
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)