Query 037252
Match_columns 138
No_of_seqs 67 out of 69
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 17:33:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037252.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037252hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fp0_A KAP-1 corepressor; PHD 99.6 4.6E-15 1.6E-19 105.8 6.2 67 21-92 7-73 (88)
2 1xwh_A Autoimmune regulator; P 99.5 2.7E-15 9.3E-20 99.9 3.2 55 35-93 3-57 (66)
3 2yql_A PHD finger protein 21A; 99.5 5.3E-15 1.8E-19 95.6 3.6 53 34-90 3-55 (56)
4 2puy_A PHD finger protein 21A; 99.5 5.9E-15 2E-19 96.3 2.9 51 38-92 3-53 (60)
5 1mm2_A MI2-beta; PHD, zinc fin 99.5 1.2E-14 4E-19 95.8 4.3 52 37-92 6-57 (61)
6 2l5u_A Chromodomain-helicase-D 99.5 1.2E-14 4.1E-19 95.7 4.3 55 33-91 4-58 (61)
7 2e6r_A Jumonji/ARID domain-con 99.5 2.3E-14 8E-19 101.3 4.7 65 25-91 1-66 (92)
8 2lri_C Autoimmune regulator; Z 99.4 3.1E-14 1.1E-18 95.9 3.0 50 37-90 9-58 (66)
9 3o36_A Transcription intermedi 99.4 1E-13 3.4E-18 106.1 4.2 52 38-93 2-53 (184)
10 1wev_A Riken cDNA 1110020M19; 99.4 5.6E-14 1.9E-18 98.5 2.5 66 26-93 2-74 (88)
11 3u5n_A E3 ubiquitin-protein li 99.4 1.2E-13 4E-18 107.8 4.1 54 36-93 3-56 (207)
12 2yt5_A Metal-response element- 99.4 5.7E-14 1.9E-18 92.3 1.6 55 36-94 2-64 (66)
13 2ku3_A Bromodomain-containing 99.4 1.8E-13 6.1E-18 93.3 2.3 55 35-93 11-68 (71)
14 2l43_A N-teminal domain from h 99.3 3.4E-13 1.2E-17 94.8 3.1 56 35-94 20-78 (88)
15 1f62_A Transcription factor WS 99.3 6.5E-13 2.2E-17 83.6 2.4 47 42-90 2-49 (51)
16 2ro1_A Transcription intermedi 99.3 9.9E-13 3.4E-17 102.3 3.6 49 40-92 2-50 (189)
17 2lbm_A Transcriptional regulat 99.3 1E-12 3.5E-17 100.4 3.5 79 30-116 53-138 (142)
18 4gne_A Histone-lysine N-methyl 99.3 2.9E-12 1E-16 93.6 4.4 54 34-91 9-62 (107)
19 2e6s_A E3 ubiquitin-protein li 99.2 8.4E-12 2.9E-16 86.1 4.3 46 40-89 26-75 (77)
20 3asl_A E3 ubiquitin-protein li 99.2 1.3E-11 4.3E-16 83.5 3.5 47 42-90 20-68 (70)
21 3shb_A E3 ubiquitin-protein li 99.1 4.6E-11 1.6E-15 82.6 4.2 46 42-89 28-75 (77)
22 2kwj_A Zinc finger protein DPF 99.1 6.2E-11 2.1E-15 85.7 3.1 48 42-91 60-108 (114)
23 3v43_A Histone acetyltransfera 99.1 8.3E-11 2.8E-15 84.6 3.6 47 42-90 63-111 (112)
24 1wen_A Inhibitor of growth fam 99.0 2.8E-10 9.7E-15 77.3 5.3 55 33-92 9-66 (71)
25 2ysm_A Myeloid/lymphoid or mix 99.0 1.3E-10 4.3E-15 82.8 3.7 50 38-89 5-55 (111)
26 2ysm_A Myeloid/lymphoid or mix 99.0 2.7E-10 9.3E-15 81.0 4.5 56 35-92 47-105 (111)
27 2k16_A Transcription initiatio 99.0 1.5E-10 5.3E-15 77.6 2.8 57 33-91 11-68 (75)
28 3ask_A E3 ubiquitin-protein li 99.0 2.1E-10 7E-15 93.4 3.4 49 40-90 174-224 (226)
29 3ql9_A Transcriptional regulat 99.0 2E-10 6.9E-15 86.6 3.0 58 30-91 47-111 (129)
30 3c6w_A P28ING5, inhibitor of g 98.9 2.7E-10 9.3E-15 74.8 1.9 51 36-91 5-58 (59)
31 2lv9_A Histone-lysine N-methyl 98.9 2.1E-09 7.1E-14 76.4 6.0 45 43-92 33-77 (98)
32 2vnf_A ING 4, P29ING4, inhibit 98.9 4.7E-10 1.6E-14 73.7 1.9 50 37-91 7-59 (60)
33 2g6q_A Inhibitor of growth pro 98.8 1.2E-09 4.2E-14 72.4 1.9 52 36-92 7-61 (62)
34 1weu_A Inhibitor of growth fam 98.7 7E-09 2.4E-13 73.9 3.6 51 37-92 33-86 (91)
35 2jmi_A Protein YNG1, ING1 homo 98.6 3.2E-08 1.1E-12 70.4 3.5 49 36-89 22-74 (90)
36 2kwj_A Zinc finger protein DPF 98.5 1.3E-08 4.5E-13 73.4 0.7 48 40-89 1-59 (114)
37 3v43_A Histone acetyltransfera 98.4 6.5E-08 2.2E-12 69.5 0.5 49 39-89 4-62 (112)
38 1x4i_A Inhibitor of growth pro 98.2 4E-07 1.4E-11 61.5 2.5 48 39-91 5-55 (70)
39 2ri7_A Nucleosome-remodeling f 98.0 7.7E-07 2.6E-11 66.8 0.7 53 38-93 6-61 (174)
40 1wil_A KIAA1045 protein; ring 98.0 1.3E-06 4.4E-11 62.8 1.7 52 37-90 12-75 (89)
41 1wee_A PHD finger family prote 98.0 6E-06 2.1E-10 55.1 4.6 63 27-92 3-67 (72)
42 1wew_A DNA-binding family prot 98.0 4.1E-06 1.4E-10 56.9 3.5 57 35-92 11-73 (78)
43 1we9_A PHD finger family prote 97.9 3.7E-06 1.3E-10 54.5 2.3 54 38-93 4-60 (64)
44 2xb1_A Pygopus homolog 2, B-ce 97.8 1.2E-05 4E-10 57.7 2.6 58 40-98 3-68 (105)
45 2rsd_A E3 SUMO-protein ligase 97.7 3E-05 1E-09 51.3 4.1 54 39-93 9-67 (68)
46 3o70_A PHD finger protein 13; 97.7 2.3E-05 7.9E-10 52.4 3.5 50 38-91 17-67 (68)
47 1wem_A Death associated transc 97.6 2E-05 6.8E-10 52.8 1.4 50 40-92 16-71 (76)
48 1wep_A PHF8; structural genomi 97.2 0.00017 5.7E-09 48.7 2.6 50 40-92 12-64 (79)
49 2vpb_A Hpygo1, pygopus homolog 97.1 9.9E-05 3.4E-09 49.1 0.6 50 39-89 7-64 (65)
50 2kgg_A Histone demethylase jar 97.0 0.0002 6.8E-09 45.1 1.0 47 42-89 4-52 (52)
51 3lqh_A Histone-lysine N-methyl 96.4 0.0019 6.5E-08 50.4 3.4 53 41-95 3-67 (183)
52 3o7a_A PHD finger protein 13 v 96.3 0.0026 8.9E-08 39.8 2.7 45 41-89 5-50 (52)
53 4bbq_A Lysine-specific demethy 96.1 0.0019 6.4E-08 45.5 1.6 38 52-91 73-114 (117)
54 3kqi_A GRC5, PHD finger protei 95.9 0.0027 9.3E-08 42.4 1.5 47 42-91 12-61 (75)
55 3pur_A Lysine-specific demethy 95.5 0.0068 2.3E-07 54.5 3.2 36 54-91 58-94 (528)
56 3kv5_D JMJC domain-containing 95.3 0.0032 1.1E-07 55.4 0.2 51 39-92 36-89 (488)
57 4gne_A Histone-lysine N-methyl 95.0 0.015 5.1E-07 42.1 3.0 40 41-85 59-98 (107)
58 1vyx_A ORF K3, K3RING; zinc-bi 95.0 0.0012 4.3E-08 42.6 -2.5 54 38-93 4-58 (60)
59 3a1b_A DNA (cytosine-5)-methyl 94.7 0.009 3.1E-07 46.4 1.2 58 32-91 71-134 (159)
60 2d8s_A Cellular modulator of i 93.9 0.0079 2.7E-07 40.7 -0.6 55 38-94 13-70 (80)
61 2pv0_B DNA (cytosine-5)-methyl 93.7 0.014 4.6E-07 50.7 0.4 58 32-91 85-148 (386)
62 3kv4_A PHD finger protein 8; e 90.0 0.041 1.4E-06 48.1 -1.0 45 45-93 9-58 (447)
63 2ct0_A Non-SMC element 1 homol 87.8 0.39 1.3E-05 32.3 2.9 49 39-92 14-62 (74)
64 2lq6_A Bromodomain-containing 87.5 0.2 6.9E-06 34.6 1.4 31 40-72 17-49 (87)
65 2ysl_A Tripartite motif-contai 84.8 0.59 2E-05 29.1 2.4 51 37-92 17-67 (73)
66 1x62_A C-terminal LIM domain p 84.1 1.3 4.5E-05 28.4 4.0 52 37-92 12-72 (79)
67 2ect_A Ring finger protein 126 82.9 0.9 3.1E-05 28.7 2.8 50 36-92 11-62 (78)
68 2ku7_A MLL1 PHD3-CYP33 RRM chi 82.3 0.35 1.2E-05 33.0 0.7 35 54-90 2-43 (140)
69 2ecn_A Ring finger protein 141 79.9 0.64 2.2E-05 28.8 1.2 47 37-92 12-58 (70)
70 1iym_A EL5; ring-H2 finger, ub 78.9 1 3.4E-05 26.5 1.8 47 39-91 4-52 (55)
71 1v87_A Deltex protein 2; ring- 78.4 0.2 7E-06 34.0 -1.6 32 61-92 60-92 (114)
72 4a0k_B E3 ubiquitin-protein li 77.6 0.53 1.8E-05 34.1 0.3 52 39-94 47-112 (117)
73 2ysj_A Tripartite motif-contai 77.1 0.92 3.2E-05 27.6 1.3 47 37-88 17-63 (63)
74 2yur_A Retinoblastoma-binding 76.1 1.2 4E-05 28.3 1.6 51 36-91 11-61 (74)
75 2kiz_A E3 ubiquitin-protein li 75.9 0.65 2.2E-05 28.7 0.4 50 37-92 11-61 (69)
76 3rsn_A SET1/ASH2 histone methy 75.4 2.4 8E-05 33.2 3.5 44 46-91 10-59 (177)
77 2d8v_A Zinc finger FYVE domain 74.8 1.7 5.9E-05 29.5 2.3 30 40-91 8-37 (67)
78 3nw0_A Non-structural maintena 74.1 0.94 3.2E-05 36.0 0.9 49 40-93 180-228 (238)
79 2ea6_A Ring finger protein 4; 71.2 1.2 4.1E-05 27.0 0.8 49 37-91 12-65 (69)
80 2ecw_A Tripartite motif-contai 71.2 2.1 7.1E-05 26.8 1.9 54 36-93 15-70 (85)
81 1x4j_A Ring finger protein 38; 71.0 0.86 2.9E-05 28.8 0.0 48 38-91 21-69 (75)
82 2ecm_A Ring finger and CHY zin 70.5 1 3.5E-05 26.4 0.3 47 39-91 4-52 (55)
83 2k1p_A Zinc finger RAN-binding 70.3 1.4 4.7E-05 25.5 0.8 14 79-92 3-16 (33)
84 2d8y_A Eplin protein; LIM doma 70.1 6.3 0.00021 25.8 4.2 54 34-91 9-72 (91)
85 2lk0_A RNA-binding protein 5; 69.9 1.1 3.8E-05 25.7 0.4 13 80-92 3-15 (32)
86 3l11_A E3 ubiquitin-protein li 69.8 2.8 9.7E-05 28.4 2.5 52 36-94 11-62 (115)
87 2ecv_A Tripartite motif-contai 69.1 1.9 6.6E-05 26.9 1.4 53 36-93 15-70 (85)
88 2ecl_A Ring-box protein 2; RNF 68.4 1.1 3.7E-05 29.3 0.1 49 39-93 14-75 (81)
89 2d8t_A Dactylidin, ring finger 66.1 5.2 0.00018 24.8 3.0 50 37-94 12-61 (71)
90 2ecj_A Tripartite motif-contai 64.5 4 0.00014 23.9 2.1 46 37-88 12-58 (58)
91 2l4z_A DNA endonuclease RBBP8, 64.0 9.5 0.00032 26.9 4.4 51 37-91 58-120 (123)
92 2co8_A NEDD9 interacting prote 63.3 11 0.00037 24.3 4.2 55 34-92 9-75 (82)
93 2ep4_A Ring finger protein 24; 63.3 1.8 6.1E-05 27.0 0.4 48 37-91 12-61 (74)
94 2d9g_A YY1-associated factor 2 63.3 3.4 0.00012 26.2 1.7 21 74-94 3-23 (53)
95 2jtn_A LIM domain-binding prot 61.2 11 0.00036 27.8 4.3 52 37-92 57-117 (182)
96 3ztg_A E3 ubiquitin-protein li 61.2 1.9 6.6E-05 28.0 0.3 54 34-92 7-60 (92)
97 1faq_A RAF-1; transferase, ser 61.1 8.3 0.00028 23.0 3.1 41 30-73 4-44 (52)
98 2dj7_A Actin-binding LIM prote 60.5 8.4 0.00029 24.9 3.3 52 35-92 10-72 (80)
99 2ecy_A TNF receptor-associated 60.1 2.2 7.5E-05 26.2 0.4 49 37-92 12-60 (66)
100 1g25_A CDK-activating kinase a 59.4 1 3.6E-05 27.6 -1.3 49 39-92 2-53 (65)
101 2egp_A Tripartite motif-contai 58.5 7.2 0.00025 24.2 2.6 52 37-93 9-64 (79)
102 1bor_A Transcription factor PM 57.9 7.5 0.00026 23.4 2.6 42 39-92 5-47 (56)
103 3k1l_B Fancl; UBC, ring, RWD, 57.5 4.3 0.00015 35.3 1.9 57 38-94 306-373 (381)
104 1t1h_A Gspef-atpub14, armadill 57.5 3.8 0.00013 25.7 1.1 49 38-93 6-54 (78)
105 2l0b_A E3 ubiquitin-protein li 57.2 2.6 9E-05 27.8 0.4 48 37-92 37-87 (91)
106 1x64_A Alpha-actinin-2 associa 56.9 8.4 0.00029 25.0 2.8 52 37-92 22-82 (89)
107 3dpl_R Ring-box protein 1; ubi 56.3 1.8 6.3E-05 30.3 -0.6 28 61-92 72-99 (106)
108 2ct2_A Tripartite motif protei 55.6 3.5 0.00012 26.2 0.7 52 36-93 11-67 (88)
109 2ckl_B Ubiquitin ligase protei 55.1 1.7 5.6E-05 31.5 -1.0 50 37-92 51-100 (165)
110 1ptq_A Protein kinase C delta 53.7 6.8 0.00023 23.1 1.8 31 39-73 10-45 (50)
111 2ea5_A Cell growth regulator w 52.8 7.5 0.00026 24.7 2.0 42 38-92 13-56 (68)
112 3uej_A NPKC-delta, protein kin 50.1 7.5 0.00026 24.5 1.7 40 30-73 10-54 (65)
113 2enz_A NPKC-theta, protein kin 49.2 16 0.00055 22.9 3.2 40 30-73 13-57 (65)
114 2db6_A SH3 and cysteine rich d 49.0 7 0.00024 25.5 1.4 40 30-73 18-62 (74)
115 4b6d_A RAC GTPase-activating p 48.4 6 0.0002 25.4 1.0 43 29-73 8-52 (61)
116 1e4u_A Transcriptional repress 48.4 7.6 0.00026 25.5 1.5 51 37-93 8-61 (78)
117 2dar_A PDZ and LIM domain prot 48.1 11 0.00038 24.4 2.3 50 39-92 24-82 (90)
118 3ng2_A RNF4, snurf, ring finge 47.9 2.9 0.0001 25.5 -0.6 50 37-92 7-61 (71)
119 2djb_A Polycomb group ring fin 47.1 5.9 0.0002 24.6 0.8 49 37-92 12-60 (72)
120 1v5n_A PDI-like hypothetical p 46.5 6.5 0.00022 26.8 1.0 33 40-74 47-79 (89)
121 1a7i_A QCRP2 (LIM1); LIM domai 46.0 8.4 0.00029 24.4 1.4 50 40-93 7-66 (81)
122 2xeu_A Ring finger protein 4; 46.0 1.3 4.5E-05 26.4 -2.4 49 39-93 2-55 (64)
123 2csy_A Zinc finger protein 183 45.2 7 0.00024 24.8 0.9 48 37-92 12-59 (81)
124 1chc_A Equine herpes virus-1 r 44.4 2.9 9.9E-05 25.5 -1.0 46 39-91 4-49 (68)
125 1n0z_A ZNF265; zinc finger, RN 43.5 7.3 0.00025 23.9 0.8 14 78-91 10-25 (45)
126 2enn_A NPKC-theta, protein kin 43.1 14 0.00047 24.2 2.2 40 30-73 24-68 (77)
127 2cur_A Skeletal muscle LIM-pro 43.1 14 0.00049 22.5 2.2 49 39-91 4-61 (69)
128 2yuu_A NPKC-delta, protein kin 42.9 18 0.00062 23.8 2.8 40 30-73 18-62 (83)
129 2eli_A Protein kinase C alpha 42.8 25 0.00087 23.3 3.5 40 30-73 18-62 (85)
130 3gj5_B Nuclear pore complex pr 42.7 4.8 0.00016 23.7 -0.2 16 79-94 4-19 (34)
131 1weo_A Cellulose synthase, cat 41.1 6.5 0.00022 28.2 0.3 59 28-92 4-68 (93)
132 1x3h_A Leupaxin; paxillin fami 40.4 22 0.00076 22.2 2.8 49 40-92 15-72 (80)
133 3gj3_B Nuclear pore complex pr 39.4 6.6 0.00023 22.9 0.1 16 79-94 4-19 (33)
134 3gj8_B Nuclear pore complex pr 38.6 6.6 0.00022 26.9 0.0 18 79-96 5-22 (92)
135 1kbe_A Kinase suppressor of RA 38.5 32 0.0011 21.2 3.2 40 31-74 6-45 (49)
136 4esj_A Type-2 restriction enzy 38.4 12 0.0004 31.1 1.4 13 78-90 52-64 (257)
137 1wyh_A SLIM 2, skeletal muscle 37.9 14 0.00047 22.6 1.5 48 40-91 5-63 (72)
138 2d8z_A Four and A half LIM dom 37.6 26 0.00089 21.3 2.7 48 40-91 5-61 (70)
139 1e8j_A Rubredoxin; iron-sulfur 36.0 18 0.00062 22.7 1.8 14 80-93 34-47 (52)
140 1g47_A Pinch protein; LIM doma 35.0 19 0.00064 22.3 1.7 49 39-91 10-69 (77)
141 1z6u_A NP95-like ring finger p 34.9 5.8 0.0002 28.9 -0.8 50 39-95 77-126 (150)
142 1nj3_A NPL4; NZF domain, rubre 34.8 13 0.00045 20.5 0.9 15 79-93 3-17 (31)
143 2cu8_A Cysteine-rich protein 2 34.3 49 0.0017 20.4 3.7 48 40-91 9-67 (76)
144 1r79_A Diacylglycerol kinase, 34.3 21 0.00071 24.4 2.0 40 32-73 30-73 (84)
145 3fl2_A E3 ubiquitin-protein li 34.3 5.4 0.00018 27.4 -1.0 50 38-94 50-99 (124)
146 3lrq_A E3 ubiquitin-protein li 34.1 4.6 0.00016 27.0 -1.4 53 37-95 19-71 (100)
147 1x61_A Thyroid receptor intera 33.9 25 0.00087 21.5 2.2 49 39-91 4-63 (72)
148 4cpa_I Metallocarboxypeptidase 33.4 13 0.00045 22.6 0.8 13 78-90 17-29 (38)
149 1y8f_A UNC-13 homolog A, MUNC1 33.3 17 0.00057 23.0 1.3 40 30-73 14-58 (66)
150 2fnf_X Putative RAS effector N 33.0 38 0.0013 22.0 3.1 40 30-73 24-66 (72)
151 2dlo_A Thyroid receptor-intera 32.6 24 0.00082 22.2 2.0 49 40-92 15-73 (81)
152 1zbd_B Rabphilin-3A; G protein 32.3 15 0.00051 27.0 1.1 52 38-93 53-109 (134)
153 1x68_A FHL5 protein; four-and- 31.8 21 0.00072 22.3 1.6 49 40-92 5-66 (76)
154 3ky9_A Proto-oncogene VAV; cal 31.8 20 0.00069 30.9 2.0 44 28-73 517-563 (587)
155 1x4k_A Skeletal muscle LIM-pro 31.5 24 0.00081 21.5 1.8 48 40-91 5-63 (72)
156 4hn5_A Glucocorticoid receptor 31.4 12 0.0004 27.2 0.4 54 39-94 28-93 (117)
157 2d8x_A Protein pinch; LIM doma 30.9 22 0.00076 21.7 1.6 49 40-92 5-62 (70)
158 3a9j_C Mitogen-activated prote 30.9 18 0.00062 20.3 1.1 16 78-93 4-19 (34)
159 2v3b_B Rubredoxin 2, rubredoxi 30.6 18 0.00062 22.9 1.1 15 79-93 33-47 (55)
160 1jm7_B BARD1, BRCA1-associated 30.5 25 0.00085 23.8 1.9 47 38-93 20-66 (117)
161 2y43_A E3 ubiquitin-protein li 29.8 7.9 0.00027 25.4 -0.7 49 39-94 21-69 (99)
162 4b2v_A S64; toxin, ICK; NMR {S 29.7 22 0.00076 20.7 1.3 15 76-90 12-26 (32)
163 6rxn_A Rubredoxin; electron tr 29.2 23 0.00079 21.9 1.4 15 79-93 27-41 (46)
164 3dzy_A Retinoic acid receptor 29.0 7.6 0.00026 33.3 -1.2 55 37-93 134-200 (467)
165 1yk4_A Rubredoxin, RD; electro 29.0 23 0.0008 22.2 1.4 15 79-93 32-46 (52)
166 2od1_A Protein CBFA2T1; zinc f 28.9 29 0.00098 21.6 1.8 24 37-65 10-33 (60)
167 2kn9_A Rubredoxin; metalloprot 28.8 20 0.00067 24.8 1.1 19 75-93 52-71 (81)
168 1nyp_A Pinch protein; LIM doma 28.7 23 0.00078 21.4 1.3 48 40-91 5-61 (66)
169 1x4l_A Skeletal muscle LIM-pro 28.6 41 0.0014 20.5 2.5 48 40-91 5-65 (72)
170 2ehe_A Four and A half LIM dom 28.3 34 0.0012 21.5 2.1 50 40-93 15-75 (82)
171 1x6a_A LIMK-2, LIM domain kina 27.8 32 0.0011 21.5 2.0 48 41-92 16-74 (81)
172 2yho_A E3 ubiquitin-protein li 27.2 14 0.00048 24.0 0.1 41 39-92 17-59 (79)
173 3g9m_A Glucocorticoid receptor 27.1 13 0.00045 25.3 -0.0 52 41-94 3-66 (90)
174 2l3k_A Rhombotin-2, linker, LI 27.1 36 0.0012 23.3 2.3 46 41-90 9-66 (123)
175 1jm7_A BRCA1, breast cancer ty 26.7 9.6 0.00033 25.2 -0.8 50 40-94 21-70 (112)
176 1dx8_A Rubredoxin; electron tr 26.2 29 0.001 23.0 1.6 15 79-93 37-51 (70)
177 3bci_A Disulfide bond protein 25.2 12 0.00041 26.5 -0.5 20 74-93 12-31 (186)
178 1pft_A TFIIB, PFTFIIBN; N-term 25.0 21 0.00073 21.3 0.7 8 81-88 23-30 (50)
179 4ayc_A E3 ubiquitin-protein li 24.7 13 0.00044 26.1 -0.4 44 40-92 53-97 (138)
180 1x63_A Skeletal muscle LIM-pro 24.3 43 0.0015 20.9 2.1 48 40-91 15-73 (82)
181 2in3_A Hypothetical protein; D 23.8 24 0.00081 25.4 0.8 18 76-93 9-26 (216)
182 3f6q_B LIM and senescent cell 23.7 37 0.0013 20.3 1.6 48 39-90 10-68 (72)
183 2ebq_A Nuclear pore complex pr 23.4 26 0.00089 21.9 0.9 21 75-95 4-24 (47)
184 2dj8_A Protein CBFA2T1; zinc f 23.4 82 0.0028 19.3 3.3 23 38-65 13-35 (60)
185 3dzy_D Peroxisome proliferator 23.2 9.7 0.00033 32.0 -1.5 50 40-92 50-111 (419)
186 1rfh_A RAS association (ralgds 23.0 53 0.0018 20.3 2.3 40 30-73 11-53 (59)
187 1ynw_B Retinoic acid receptor 22.8 23 0.00078 24.8 0.6 53 40-94 3-67 (99)
188 3f4s_A Alpha-DSBA1, putative u 22.4 15 0.00051 28.1 -0.5 18 74-91 40-57 (226)
189 1wig_A KIAA1808 protein; LIM d 22.4 38 0.0013 21.1 1.6 48 41-92 6-63 (73)
190 4ap4_A E3 ubiquitin ligase RNF 22.1 10 0.00036 25.3 -1.3 49 39-93 71-124 (133)
191 4b2u_A S67; toxin, ICK; NMR {S 21.9 26 0.00089 20.9 0.6 12 78-89 14-25 (36)
192 2ckl_A Polycomb group ring fin 21.7 19 0.00066 23.9 -0.0 50 37-93 12-61 (108)
193 2jz8_A Uncharacterized protein 21.5 61 0.0021 22.8 2.5 36 54-93 24-59 (87)
194 3gmf_A Protein-disulfide isome 21.5 16 0.00055 27.5 -0.5 17 74-90 16-32 (205)
195 3kzq_A Putative uncharacterize 21.1 31 0.0011 25.0 1.0 12 81-92 9-20 (208)
196 4rxn_A Rubredoxin; electron tr 20.9 32 0.0011 21.9 0.9 14 80-93 34-47 (54)
197 4ic3_A E3 ubiquitin-protein li 20.9 22 0.00075 22.4 0.1 41 38-91 22-64 (74)
198 1s24_A Rubredoxin 2; electron 20.8 30 0.001 24.1 0.8 15 79-93 65-79 (87)
No 1
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.56 E-value=4.6e-15 Score=105.77 Aligned_cols=67 Identities=19% Similarity=0.368 Sum_probs=55.7
Q ss_pred cccCCCCCCCCCCcCCCcccccccccccCCCccEEecCCCCCcccccccccCCCCccCCCCCccccccchhh
Q 037252 21 ENHGGSGRSGDFTDVDFLEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKC 92 (138)
Q Consensus 21 ~~h~~s~~~~~~~~~~~~~~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~ 92 (138)
-+|-+|..+.. ......+++.|.+|+++|+ ||+|| +||.+||..|+.++++..|+|+||||.|....
T Consensus 7 ~~~~~~~~~~~-~~~~d~n~~~C~vC~~~g~--LL~CD--~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~ 73 (88)
T 1fp0_A 7 HHHHGSDIIDE-FGTLDDSATICRVCQKPGD--LVMCN--QCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 73 (88)
T ss_dssp CCCSSSCCCCC-CCSSSSSSSCCSSSCSSSC--CEECT--TSSCEECTTSSSTTCCCCCSSSCCCCSCCCCC
T ss_pred ccccccccccc-ccccCCCCCcCcCcCCCCC--EEECC--CCCCceecccCCCCCCCCcCCCcCCccccCCC
Confidence 34667765533 2333567889999999999 99999 99999999999999998999999999999654
No 2
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=99.53 E-value=2.7e-15 Score=99.87 Aligned_cols=55 Identities=27% Similarity=0.631 Sum_probs=49.4
Q ss_pred CCCcccccccccccCCCccEEecCCCCCcccccccccCCCCccCCCCCccccccchhhh
Q 037252 35 VDFLEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKCE 93 (138)
Q Consensus 35 ~~~~~~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~a 93 (138)
+...+++.|.+|+.+|+ ||+|| +|+.+||..|+++++...|.|+||||.|..++.
T Consensus 3 ~~~~~~~~C~vC~~~g~--ll~CD--~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~~ 57 (66)
T 1xwh_A 3 MAQKNEDECAVCRDGGE--LICCD--GCPRAFHLACLSPPLREIPSGTWRCSSCLQATV 57 (66)
T ss_dssp CCCSCCCSBSSSSCCSS--CEECS--SCCCEECTTTSSSCCSSCCSSCCCCHHHHHTCC
T ss_pred cCCCCCCCCccCCCCCC--EEEcC--CCChhhcccccCCCcCcCCCCCeECccccCccc
Confidence 34567899999999999 99999 999999999999998889999999999986543
No 3
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=5.3e-15 Score=95.55 Aligned_cols=53 Identities=28% Similarity=0.553 Sum_probs=47.9
Q ss_pred cCCCcccccccccccCCCccEEecCCCCCcccccccccCCCCccCCCCCccccccch
Q 037252 34 DVDFLEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWY 90 (138)
Q Consensus 34 ~~~~~~~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~y 90 (138)
+....+++.|.+|+.+|+ ||.|| +|+.+||..|+.++++..|.|+||||.|..
T Consensus 3 ~g~~~~~~~C~vC~~~g~--ll~Cd--~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 3 SGSSGHEDFCSVCRKSGQ--LLMCD--TCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CCCCSSCCSCSSSCCSSC--CEECS--SSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCcCCCCCCCccCCCCCe--EEEcC--CCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 344567899999999999 99999 999999999999999889999999999963
No 4
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=99.50 E-value=5.9e-15 Score=96.32 Aligned_cols=51 Identities=29% Similarity=0.658 Sum_probs=46.9
Q ss_pred cccccccccccCCCccEEecCCCCCcccccccccCCCCccCCCCCccccccchhh
Q 037252 38 LEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKC 92 (138)
Q Consensus 38 ~~~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~ 92 (138)
.+++.|.+|+.+|+ ||.|| +|+.+||..|++++++..|.|+||||.|..+.
T Consensus 3 ~~~~~C~vC~~~g~--ll~Cd--~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 3 IHEDFCSVCRKSGQ--LLMCD--TCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCCSSCTTTCCCSS--CEECS--SSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCCcCCCCCCc--EEEcC--CCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 46899999999999 99999 99999999999999998999999999997543
No 5
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=99.50 E-value=1.2e-14 Score=95.80 Aligned_cols=52 Identities=31% Similarity=0.589 Sum_probs=47.7
Q ss_pred CcccccccccccCCCccEEecCCCCCcccccccccCCCCccCCCCCccccccchhh
Q 037252 37 FLEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKC 92 (138)
Q Consensus 37 ~~~~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~ 92 (138)
..+++.|.+|+.+|+ ||+|| +|+.+||..|++++++..|+|+||||.|..+.
T Consensus 6 d~~~~~C~vC~~~g~--ll~Cd--~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 6 DHHMEFCRVCKDGGE--LLCCD--TCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp CSSCSSCTTTCCCSS--CBCCS--SSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred cCCCCcCCCCCCCCC--EEEcC--CCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 456889999999999 99999 99999999999999888999999999998654
No 6
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=99.50 E-value=1.2e-14 Score=95.74 Aligned_cols=55 Identities=22% Similarity=0.587 Sum_probs=49.0
Q ss_pred CcCCCcccccccccccCCCccEEecCCCCCcccccccccCCCCccCCCCCccccccchh
Q 037252 33 TDVDFLEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYK 91 (138)
Q Consensus 33 ~~~~~~~~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk 91 (138)
...+..+++.|.+|+.+|+ ||.|| +|+.+||..|++++++..|+|+||||.|..+
T Consensus 4 ~~~~~~~~~~C~vC~~~g~--ll~CD--~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 4 GSYETDHQDYCEVCQQGGE--IILCD--TCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SCCSSCCCSSCTTTSCCSS--EEECS--SSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CcccCCCCCCCccCCCCCc--EEECC--CCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 3444567899999999999 99999 9999999999999888889999999999864
No 7
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=2.3e-14 Score=101.30 Aligned_cols=65 Identities=29% Similarity=0.596 Sum_probs=56.3
Q ss_pred CCCCCCCCCcCCCcccccccccccCCC-ccEEecCCCCCcccccccccCCCCccCCCCCccccccchh
Q 037252 25 GSGRSGDFTDVDFLEEEPCIKCNRQRD-ENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYK 91 (138)
Q Consensus 25 ~s~~~~~~~~~~~~~~d~C~~C~~~G~-e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk 91 (138)
+|+-+...+.....+++.|.+|+.+++ +.||+|| +|+.+||..|+++++...|.|+||||.|..+
T Consensus 1 ~~~~~~~~s~~~~~~~~~C~vC~~~~~~~~ll~CD--~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 1 GSSGSSGHSSAQFIDSYICQVCSRGDEDDKLLFCD--GCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCSSCCCCCCCCCCCCCCSSSCCSGGGGGCEECT--TTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCchhhccCCCCCccCCCcCCCCCEEEcC--CCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 455566677777888999999999884 4699999 9999999999999999899999999999643
No 8
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=99.44 E-value=3.1e-14 Score=95.87 Aligned_cols=50 Identities=20% Similarity=0.367 Sum_probs=46.1
Q ss_pred CcccccccccccCCCccEEecCCCCCcccccccccCCCCccCCCCCccccccch
Q 037252 37 FLEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWY 90 (138)
Q Consensus 37 ~~~~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~y 90 (138)
..+...|.+|+++|+ ||+|| +|+.+||..|+.+++...|.|+||||.|.-
T Consensus 9 ~~~~~~C~vC~~~~~--ll~Cd--~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 58 (66)
T 2lri_C 9 LAPGARCGVCGDGTD--VLRCT--HCAAAFHWRCHFPAGTSRPGTGLRCRSCSG 58 (66)
T ss_dssp CCTTCCCTTTSCCTT--CEECS--SSCCEECHHHHCTTTCCCCSSSCCCTTTTT
T ss_pred CCCCCCcCCCCCCCe--EEECC--CCCCceecccCCCccCcCCCCCEECccccC
Confidence 445678999999999 99999 999999999999999999999999999974
No 9
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.41 E-value=1e-13 Score=106.08 Aligned_cols=52 Identities=25% Similarity=0.586 Sum_probs=48.1
Q ss_pred cccccccccccCCCccEEecCCCCCcccccccccCCCCccCCCCCccccccchhhh
Q 037252 38 LEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKCE 93 (138)
Q Consensus 38 ~~~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~a 93 (138)
.|++.|.+|+.+|+ ||+|| +||.+||..|+.+++...|.|+|+||.|.....
T Consensus 2 ~~~~~C~~C~~~g~--ll~Cd--~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 2 PNEDWCAVCQNGGE--LLCCE--KCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp CSCSSCTTTCCCSS--CEECS--SSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCCccccCCCCCe--eeecC--CCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 37899999999999 99999 999999999999999989999999999997653
No 10
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.41 E-value=5.6e-14 Score=98.49 Aligned_cols=66 Identities=23% Similarity=0.416 Sum_probs=50.2
Q ss_pred CCCCCCCCcCCCcccccccccccCCC---ccEEecCCCCCcccccccccCCCCcc----CCCCCccccccchhhh
Q 037252 26 SGRSGDFTDVDFLEEEPCIKCNRQRD---ENLLVCSQSGCPISVHENCLSCGVKF----DDVGNFYCPYCWYKCE 93 (138)
Q Consensus 26 s~~~~~~~~~~~~~~d~C~~C~~~G~---e~LL~Cd~~gCp~s~H~~Cl~~~~~~----dd~G~fyCP~C~yk~a 93 (138)
|+.+.+-.++...++++|.+|+.+.. ..||+|| +|+.+||..|+.+++.- .|.|+||||.|..+..
T Consensus 2 ~~g~~~~dd~~~e~~~~C~vC~~~~~~~~~~ll~CD--~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 2 SSGSSGADDFAMEMGLACVVCRQMTVASGNQLVECQ--ECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp CCCCCCCCCCHHHHCCSCSSSCCCCCCTTCCEEECS--SSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCCCCCcccccCCCCCcCCCCCCCCCCCCCceEECC--CCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 34333333333446789999998821 2399999 99999999999988773 7999999999986554
No 11
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.40 E-value=1.2e-13 Score=107.79 Aligned_cols=54 Identities=28% Similarity=0.559 Sum_probs=49.1
Q ss_pred CCcccccccccccCCCccEEecCCCCCcccccccccCCCCccCCCCCccccccchhhh
Q 037252 36 DFLEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKCE 93 (138)
Q Consensus 36 ~~~~~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~a 93 (138)
+..+++.|.+|+.+|+ ||+|| +||.+||..|+.+++...|.|+|+||.|.-...
T Consensus 3 ~d~~~~~C~~C~~~g~--ll~Cd--~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 3 DDPNEDWCAVCQNGGD--LLCCE--KCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGK 56 (207)
T ss_dssp CCSSCSSBTTTCCCEE--EEECS--SSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCCCCCCCCCCCCCc--eEEcC--CCCCccCCccCCCCCCCCCCCCEEeCceeCccc
Confidence 3457899999999999 99999 999999999999999999999999999997654
No 12
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=99.39 E-value=5.7e-14 Score=92.26 Aligned_cols=55 Identities=16% Similarity=0.496 Sum_probs=47.4
Q ss_pred CCcccccccccccC-----CCccEEecCCCCCcccccccccCCCCcc---CCCCCccccccchhhhh
Q 037252 36 DFLEEEPCIKCNRQ-----RDENLLVCSQSGCPISVHENCLSCGVKF---DDVGNFYCPYCWYKCEL 94 (138)
Q Consensus 36 ~~~~~d~C~~C~~~-----G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~---dd~G~fyCP~C~yk~a~ 94 (138)
+..+++.|.+|+.+ ++ ||+|| +|+.+||..|+++++.. .|.|+||||.|..+.+.
T Consensus 2 ~~~~~~~C~vC~~~~~~~~~~--ll~Cd--~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~~ 64 (66)
T 2yt5_A 2 SSGSSGVCTICQEEYSEAPNE--MVICD--KCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTT 64 (66)
T ss_dssp CCCCCCCBSSSCCCCCBTTBC--EEECS--SSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTSC
T ss_pred CCCCCCCCCCCCCCCCCCCCC--EEECC--CCChHHHhhhCCCcccccccCCCCCEECCCCcCcccc
Confidence 35678999999987 66 99999 99999999999987764 38999999999877654
No 13
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=99.36 E-value=1.8e-13 Score=93.30 Aligned_cols=55 Identities=22% Similarity=0.539 Sum_probs=45.7
Q ss_pred CCCcccccccccccCC---CccEEecCCCCCcccccccccCCCCccCCCCCccccccchhhh
Q 037252 35 VDFLEEEPCIKCNRQR---DENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKCE 93 (138)
Q Consensus 35 ~~~~~~d~C~~C~~~G---~e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~a 93 (138)
....+++.|.+|+.++ .+.||+|| +|+++||..|++++ ..|+|+||||.|..++.
T Consensus 11 ~~~~~~~~C~vC~~~~s~~~~~ll~CD--~C~~~~H~~Cl~~~--~vP~g~W~C~~C~~~~~ 68 (71)
T 2ku3_A 11 SLIDEDAVCSICMDGESQNSNVILFCD--MCNLAVHQECYGVP--YIPEGQWLCRHCLQSRA 68 (71)
T ss_dssp CCCCSSCSCSSSCCCCCCSSSCEEECS--SSCCEEEHHHHTCS--SCCSSCCCCHHHHHHHH
T ss_pred cCCCCCCCCCCCCCCCCCCCCCEEECC--CCCCccccccCCCC--cCCCCCcCCccCcCcCc
Confidence 3456689999999886 12499999 99999999999964 58999999999986553
No 14
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=99.34 E-value=3.4e-13 Score=94.80 Aligned_cols=56 Identities=21% Similarity=0.527 Sum_probs=46.6
Q ss_pred CCCcccccccccccCC--C-ccEEecCCCCCcccccccccCCCCccCCCCCccccccchhhhh
Q 037252 35 VDFLEEEPCIKCNRQR--D-ENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKCEL 94 (138)
Q Consensus 35 ~~~~~~d~C~~C~~~G--~-e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~a~ 94 (138)
....+++.|.+|+.+| + +.||+|| +|+.+||..|++++ ..|.|+||||.|......
T Consensus 20 ~~~~~~~~C~vC~~~~s~~~~~ll~CD--~C~~~fH~~Cl~p~--~vP~g~W~C~~C~~~~~~ 78 (88)
T 2l43_A 20 SLIDEDAVCSICMDGESQNSNVILFCD--MCNLAVHQECYGVP--YIPEGQWLCRHCLQSRAR 78 (88)
T ss_dssp CCCCCCCCCSSCCSSSSCSEEEEEECS--SSCCCCCHHHHTCS--SCCSSCCCCHHHHHHTTS
T ss_pred CcCCCCCcCCcCCCCCCCCCCCEEECC--CCCchhhcccCCCC--ccCCCceECccccCccch
Confidence 3356789999999987 1 2499999 99999999999965 489999999999876544
No 15
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.30 E-value=6.5e-13 Score=83.64 Aligned_cols=47 Identities=26% Similarity=0.650 Sum_probs=42.0
Q ss_pred cccccccCCC-ccEEecCCCCCcccccccccCCCCccCCCCCccccccch
Q 037252 42 PCIKCNRQRD-ENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWY 90 (138)
Q Consensus 42 ~C~~C~~~G~-e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~y 90 (138)
.|.+|+.+|+ +.||.|| +|+.+||..|+.+++...|.|+||||.|..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd--~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCD--ECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECT--TTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECC--CCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 5899998774 3599999 999999999999988889999999999963
No 16
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.30 E-value=9.9e-13 Score=102.35 Aligned_cols=49 Identities=20% Similarity=0.507 Sum_probs=46.0
Q ss_pred cccccccccCCCccEEecCCCCCcccccccccCCCCccCCCCCccccccchhh
Q 037252 40 EEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKC 92 (138)
Q Consensus 40 ~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~ 92 (138)
++.|.+|+.+|+ ||+|| +||.+||..|+.+++...|.|+|+||.|..+.
T Consensus 2 ~~~C~~C~~~g~--ll~Cd--~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 2 ATICRVCQKPGD--LVMCN--QCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCCBTTTCCCSS--CCCCT--TTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CCcCccCCCCCc--eeECC--CCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 589999999999 99999 99999999999998888999999999998764
No 17
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=99.29 E-value=1e-12 Score=100.39 Aligned_cols=79 Identities=18% Similarity=0.393 Sum_probs=60.2
Q ss_pred CCCCcCCCcccccccccccCCCccEEecCCCCCcccccccccCCCCc---c----CCCCCccccccchhhhhhHHHHHHH
Q 037252 30 GDFTDVDFLEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVK---F----DDVGNFYCPYCWYKCELMRTKELRK 102 (138)
Q Consensus 30 ~~~~~~~~~~~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~~~---~----dd~G~fyCP~C~yk~a~~~~~e~kk 102 (138)
..++..+..++++|.+|+.+|+ ||+|| +||.+||..|+.+++. + .|+|+|+||.|..+. ...+++
T Consensus 53 ~~~~~d~Dg~~d~C~vC~~GG~--LlcCD--~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~p----l~~l~~ 124 (142)
T 2lbm_A 53 DDISRDSDGMDEQCRWCAEGGN--LICCD--FCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPEP----LLDLVT 124 (142)
T ss_dssp SCCCBCTTSCBCSCSSSCCCSS--EEECS--SSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCCT----THHHHH
T ss_pred CCceecCCCCCCeecccCCCCc--EEeCC--CCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCcc----HHHHHH
Confidence 3455555778999999999999 99999 9999999999997654 1 589999999998643 234555
Q ss_pred HHHHHHHHHHhhhc
Q 037252 103 KAKETKKQLACFID 116 (138)
Q Consensus 103 ~a~~AkK~L~~Fl~ 116 (138)
...+.=+.|..++.
T Consensus 125 ~c~~~~~~~~~~~~ 138 (142)
T 2lbm_A 125 ACNSVFENLEQLLQ 138 (142)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 55555555666554
No 18
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=99.26 E-value=2.9e-12 Score=93.59 Aligned_cols=54 Identities=24% Similarity=0.682 Sum_probs=47.7
Q ss_pred cCCCcccccccccccCCCccEEecCCCCCcccccccccCCCCccCCCCCccccccchh
Q 037252 34 DVDFLEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYK 91 (138)
Q Consensus 34 ~~~~~~~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk 91 (138)
.....++++|.+|+.+|+ ||.||..+||.+||..|++ +...|.|+||||.|...
T Consensus 9 ~~~~~~~~~C~~C~~~G~--ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~ 62 (107)
T 4gne_A 9 EPKQMHEDYCFQCGDGGE--LVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCD 62 (107)
T ss_dssp -CCCSSCSSCTTTCCCSE--EEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCT
T ss_pred CCcCCCCCCCCcCCCCCc--EeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCC
Confidence 445678999999999999 9999988999999999999 77789999999998744
No 19
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.21 E-value=8.4e-12 Score=86.12 Aligned_cols=46 Identities=26% Similarity=0.606 Sum_probs=41.8
Q ss_pred ccccccccc---CCCccEEecCCCCCcccccccccCCCCccCCCC-Cccccccc
Q 037252 40 EEPCIKCNR---QRDENLLVCSQSGCPISVHENCLSCGVKFDDVG-NFYCPYCW 89 (138)
Q Consensus 40 ~d~C~~C~~---~G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G-~fyCP~C~ 89 (138)
+..|.+|+. +|+ ||+|| +|+.+||..|+++++...|+| +||||.|.
T Consensus 26 ~c~C~vC~~~~~~~~--ll~CD--~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~ 75 (77)
T 2e6s_A 26 SCSCRVCGGKHEPNM--QLLCD--ECNVAYHIYCLNPPLDKVPEEEYWYCPSCK 75 (77)
T ss_dssp SSSCSSSCCCCCSTT--EEECS--SSCCEEETTSSSSCCSSCCCSSCCCCTTTC
T ss_pred CCCCcCcCCcCCCCC--EEEcC--CCCccccccccCCCccCCCCCCCcCCcCcc
Confidence 458999996 555 99999 999999999999999999999 99999996
No 20
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=99.17 E-value=1.3e-11 Score=83.54 Aligned_cols=47 Identities=28% Similarity=0.733 Sum_probs=40.6
Q ss_pred cccccccCCC-ccEEecCCCCCcccccccccCCCCccCCCC-Cccccccch
Q 037252 42 PCIKCNRQRD-ENLLVCSQSGCPISVHENCLSCGVKFDDVG-NFYCPYCWY 90 (138)
Q Consensus 42 ~C~~C~~~G~-e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G-~fyCP~C~y 90 (138)
.|.+|+..++ +.||.|| +|+.+||..|++++++..|+| +||||.|..
T Consensus 20 ~C~~C~~~~~~~~ll~CD--~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCD--ECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEEECT--TTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEEEcC--CCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 6888895322 2499999 999999999999999999999 999999974
No 21
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=99.11 E-value=4.6e-11 Score=82.64 Aligned_cols=46 Identities=28% Similarity=0.769 Sum_probs=41.6
Q ss_pred cccccccCCC-ccEEecCCCCCcccccccccCCCCccCCCCC-ccccccc
Q 037252 42 PCIKCNRQRD-ENLLVCSQSGCPISVHENCLSCGVKFDDVGN-FYCPYCW 89 (138)
Q Consensus 42 ~C~~C~~~G~-e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~-fyCP~C~ 89 (138)
.|.+|+..++ +.||+|| +|+.+||..|+.+++...|+|+ ||||.|.
T Consensus 28 ~C~vC~~~~d~~~ll~CD--~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~ 75 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCD--ECDMAFHIYCLDPPLSSVPSEDEWYCPECR 75 (77)
T ss_dssp SBTTTCCCSCGGGEEECT--TTCCEEETTTSSSCCSSCCSSSCCCCTTTC
T ss_pred cCCccCCCCCCcceeEeC--CCCCccCcccCCCcccCCCCCCceECcCcc
Confidence 6888888765 4699999 9999999999999999999999 9999996
No 22
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=99.06 E-value=6.2e-11 Score=85.68 Aligned_cols=48 Identities=31% Similarity=0.765 Sum_probs=41.5
Q ss_pred cccccccCCC-ccEEecCCCCCcccccccccCCCCccCCCCCccccccchh
Q 037252 42 PCIKCNRQRD-ENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYK 91 (138)
Q Consensus 42 ~C~~C~~~G~-e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk 91 (138)
.|.+|+..++ ..||.|| +|+.+||..|+++++...|+|+||||.|...
T Consensus 60 ~C~~C~~~~~~~~ll~Cd--~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~ 108 (114)
T 2kwj_A 60 SCILCGTSENDDQLLFCD--DCDRGYHMYCLNPPVAEPPEGSWSCHLCWEL 108 (114)
T ss_dssp CCTTTTCCTTTTTEEECS--SSCCEEETTTSSSCCSSCCSSCCCCHHHHHH
T ss_pred ccCcccccCCCCceEEcC--CCCccccccccCCCccCCCCCCeECccccch
Confidence 6889988432 2499999 9999999999999999999999999999643
No 23
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=99.05 E-value=8.3e-11 Score=84.65 Aligned_cols=47 Identities=26% Similarity=0.617 Sum_probs=41.5
Q ss_pred cccccccCCC--ccEEecCCCCCcccccccccCCCCccCCCCCccccccch
Q 037252 42 PCIKCNRQRD--ENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWY 90 (138)
Q Consensus 42 ~C~~C~~~G~--e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~y 90 (138)
.|.+|+..|. +.||.|| +|+.+||..|+.+++...|+|+||||.|.-
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd--~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCD--SCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECT--TTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcC--CCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 6889987652 2499999 999999999999999999999999999963
No 24
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=99.03 E-value=2.8e-10 Score=77.26 Aligned_cols=55 Identities=25% Similarity=0.642 Sum_probs=43.9
Q ss_pred CcCCCccccccccccc--CCCccEEecCCCCCcc-cccccccCCCCccCCCCCccccccchhh
Q 037252 33 TDVDFLEEEPCIKCNR--QRDENLLVCSQSGCPI-SVHENCLSCGVKFDDVGNFYCPYCWYKC 92 (138)
Q Consensus 33 ~~~~~~~~d~C~~C~~--~G~e~LL~Cd~~gCp~-s~H~~Cl~~~~~~dd~G~fyCP~C~yk~ 92 (138)
.+.+..+..+| +|++ .|. +|.||+..||+ .||..|++ ++-.|.|.||||.|..++
T Consensus 9 ~~~d~~~~~~C-~C~~~~~g~--MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 9 MPVDPNEPTYC-LCHQVSYGE--MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp CCCCTTSCCCS-TTCCCSCSS--EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred cccCCCCCCEE-ECCCCCCCC--EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 34445567899 5999 677 99999444995 99999999 677788999999997654
No 25
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.03 E-value=1.3e-10 Score=82.80 Aligned_cols=50 Identities=24% Similarity=0.539 Sum_probs=44.1
Q ss_pred cccccccccccCCC-ccEEecCCCCCcccccccccCCCCccCCCCCccccccc
Q 037252 38 LEEEPCIKCNRQRD-ENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCW 89 (138)
Q Consensus 38 ~~~d~C~~C~~~G~-e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~ 89 (138)
.|++.|.+|+++|+ +.||.|+ +||.+||..|++.+....+++.|+||.|.
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~--~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCT--TCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECS--SSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCCcCCeECC--CCCCCcChHHhCCccccccccCccCCcCC
Confidence 47899999999998 3459999 99999999999987666678999999985
No 26
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=99.00 E-value=2.7e-10 Score=81.04 Aligned_cols=56 Identities=23% Similarity=0.503 Sum_probs=47.6
Q ss_pred CCCcccc--cccccccCCC-ccEEecCCCCCcccccccccCCCCccCCCCCccccccchhh
Q 037252 35 VDFLEEE--PCIKCNRQRD-ENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKC 92 (138)
Q Consensus 35 ~~~~~~d--~C~~C~~~G~-e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~ 92 (138)
..|.=.+ .|.+|++.++ +.||.|+ .|+.+||..|+.++++..|+|+||||.|...+
T Consensus 47 ~~W~C~~C~~C~~C~~~~~~~~ll~Cd--~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c~ 105 (111)
T 2ysm_A 47 AGWQCPECKVCQNCKQSGEDSKMLVCD--TCDKGYHTFCLQPVMKSVPTNGWKCKNCRICI 105 (111)
T ss_dssp TTCCCTTTCCCTTTCCCSCCTTEEECS--SSCCEEEGGGSSSCCSSCCSSCCCCHHHHCCS
T ss_pred cCccCCcCCcccccCccCCCCCeeECC--CCCcHHhHHhcCCccccCCCCCcCCcCCcCcC
Confidence 4455444 7999999886 4799999 99999999999999998999999999997643
No 27
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=98.99 E-value=1.5e-10 Score=77.58 Aligned_cols=57 Identities=23% Similarity=0.388 Sum_probs=46.6
Q ss_pred CcCCCcccccccccccCCC-ccEEecCCCCCcccccccccCCCCccCCCCCccccccchh
Q 037252 33 TDVDFLEEEPCIKCNRQRD-ENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYK 91 (138)
Q Consensus 33 ~~~~~~~~d~C~~C~~~G~-e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk 91 (138)
.+.+..+..+|.+|+...+ +.+|.|| +|+..||..|++.++...+.++||||.|..+
T Consensus 11 ~~~~~~~~~~C~~C~~~~~~~~mi~CD--~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~ 68 (75)
T 2k16_A 11 RDEWGNQIWICPGCNKPDDGSPMIGCD--DCDDWYHWPCVGIMAAPPEEMQWFCPKCANK 68 (75)
T ss_dssp ECSSSCEEECBTTTTBCCSSCCEEECS--SSSSEEEHHHHTCSSCCCSSSCCCCTTTHHH
T ss_pred ccccCCCCcCCCCCCCCCCCCCEEEcC--CCCcccccccCCCCccCCCCCCEEChhccCc
Confidence 3444556778999998744 2599999 9999999999998777777899999999754
No 28
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=98.97 E-value=2.1e-10 Score=93.40 Aligned_cols=49 Identities=27% Similarity=0.670 Sum_probs=39.7
Q ss_pred cccccccccCCC-ccEEecCCCCCcccccccccCCCCccCCCC-Cccccccch
Q 037252 40 EEPCIKCNRQRD-ENLLVCSQSGCPISVHENCLSCGVKFDDVG-NFYCPYCWY 90 (138)
Q Consensus 40 ~d~C~~C~~~G~-e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G-~fyCP~C~y 90 (138)
+..|.+|+..++ +.||+|| +|+.+||..|+.+|+...|+| +||||.|..
T Consensus 174 ~c~C~vC~~~~~~~~lL~CD--~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 174 VCACHLCGGRQDPDKQLMCD--ECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TTSCSSSCCCCC--CCEECS--SSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCCcCCCCCCCCCCeEEcC--CCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 457999998432 2499999 999999999999999999999 999999963
No 29
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=98.97 E-value=2e-10 Score=86.57 Aligned_cols=58 Identities=21% Similarity=0.505 Sum_probs=48.0
Q ss_pred CCCCcCCCcccccccccccCCCccEEecCCCCCcccccccccCCCC------cc-CCCCCccccccchh
Q 037252 30 GDFTDVDFLEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGV------KF-DDVGNFYCPYCWYK 91 (138)
Q Consensus 30 ~~~~~~~~~~~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~~------~~-dd~G~fyCP~C~yk 91 (138)
..+.-.+..++++|.+|+.+|+ ||+|| +||.+||.+|+.+.+ .. .+++.|+|+.|.-+
T Consensus 47 ~~~~~d~Dg~~~~C~vC~dGG~--LlcCd--~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 47 DDISRDSDGMDEQCRWCAEGGN--LICCD--FCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp SCCCBCTTSCBSSCTTTCCCSE--EEECS--SSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred cccccCCCCCCCcCeecCCCCe--eEecC--CCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 3455556778899999999999 99999 999999999999642 12 48999999999743
No 30
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=98.92 E-value=2.7e-10 Score=74.84 Aligned_cols=51 Identities=25% Similarity=0.708 Sum_probs=40.3
Q ss_pred CCccccccccccc--CCCccEEecCCCCCcc-cccccccCCCCccCCCCCccccccchh
Q 037252 36 DFLEEEPCIKCNR--QRDENLLVCSQSGCPI-SVHENCLSCGVKFDDVGNFYCPYCWYK 91 (138)
Q Consensus 36 ~~~~~d~C~~C~~--~G~e~LL~Cd~~gCp~-s~H~~Cl~~~~~~dd~G~fyCP~C~yk 91 (138)
+..+..+| +|++ .|. ++.||+..||+ .||..|++ ++-.|.|.||||.|..+
T Consensus 5 d~~e~~yC-~C~~~~~g~--mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~~ 58 (59)
T 3c6w_A 5 GSNEPTYC-LCHQVSYGE--MIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQE 58 (59)
T ss_dssp ---CCEET-TTTEECCSE--EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHCC
T ss_pred CCCCCcEE-ECCCCCCCC--eeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccCc
Confidence 34556788 7999 677 99999444995 99999999 67778899999999754
No 31
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=98.90 E-value=2.1e-09 Score=76.35 Aligned_cols=45 Identities=16% Similarity=0.471 Sum_probs=35.5
Q ss_pred ccccccCCCccEEecCCCCCcccccccccCCCCccCCCCCccccccchhh
Q 037252 43 CIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKC 92 (138)
Q Consensus 43 C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~ 92 (138)
|.++..+|. +|.|+ +|+..||..|++++....| ..||||.|.-+.
T Consensus 33 C~~~~~~~~--mi~Cd--~C~~w~H~~C~~~~~~~~p-~~w~C~~C~~~~ 77 (98)
T 2lv9_A 33 CGFTHDDGY--MICCD--KCSVWQHIDCMGIDRQHIP-DTYLCERCQPRN 77 (98)
T ss_dssp TSCCSCSSC--EEEBT--TTCBEEETTTTTCCTTSCC-SSBCCTTTSSSC
T ss_pred CCCccCCCc--EEEcC--CCCCcCcCcCCCCCccCCC-CCEECCCCcCCC
Confidence 444455566 99999 9999999999998765555 589999997544
No 32
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=98.88 E-value=4.7e-10 Score=73.66 Aligned_cols=50 Identities=22% Similarity=0.616 Sum_probs=39.3
Q ss_pred Cccccccccccc--CCCccEEecCCCCCc-ccccccccCCCCccCCCCCccccccchh
Q 037252 37 FLEEEPCIKCNR--QRDENLLVCSQSGCP-ISVHENCLSCGVKFDDVGNFYCPYCWYK 91 (138)
Q Consensus 37 ~~~~d~C~~C~~--~G~e~LL~Cd~~gCp-~s~H~~Cl~~~~~~dd~G~fyCP~C~yk 91 (138)
..+..+| +|++ .|. +|.||+-.|| -.||..|++ ++-.|.|.||||.|..+
T Consensus 7 ~~e~~~C-~C~~~~~g~--mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~~ 59 (60)
T 2vnf_A 7 PNEPTYC-LCHQVSYGE--MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 59 (60)
T ss_dssp --CCEET-TTTEECCSE--EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC-
T ss_pred CCCCCEE-ECCCcCCCC--EEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccCc
Confidence 3456788 6998 666 9999944499 589999999 67778899999999754
No 33
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=98.80 E-value=1.2e-09 Score=72.43 Aligned_cols=52 Identities=31% Similarity=0.740 Sum_probs=40.6
Q ss_pred CCccccccccccc--CCCccEEecCCCCCc-ccccccccCCCCccCCCCCccccccchhh
Q 037252 36 DFLEEEPCIKCNR--QRDENLLVCSQSGCP-ISVHENCLSCGVKFDDVGNFYCPYCWYKC 92 (138)
Q Consensus 36 ~~~~~d~C~~C~~--~G~e~LL~Cd~~gCp-~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~ 92 (138)
+..+..+| +|++ .|. ++.||+-.|| ..||.+|++ ++-.|.|.||||.|..++
T Consensus 7 d~~e~~yC-~C~~~~~g~--MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~~r 61 (62)
T 2g6q_A 7 DPNEPTYC-LCNQVSYGE--MIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRGDN 61 (62)
T ss_dssp ---CCEET-TTTEECCSE--EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHTCC
T ss_pred CCCCCcEE-ECCCCCCCC--eeeeeCCCCCcccEecccCC--cCcCCCCCEECcCcccCC
Confidence 34456788 7999 777 9999944499 799999999 566789999999997543
No 34
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.72 E-value=7e-09 Score=73.95 Aligned_cols=51 Identities=22% Similarity=0.604 Sum_probs=41.5
Q ss_pred Cccccccccccc--CCCccEEecCCCCCc-ccccccccCCCCccCCCCCccccccchhh
Q 037252 37 FLEEEPCIKCNR--QRDENLLVCSQSGCP-ISVHENCLSCGVKFDDVGNFYCPYCWYKC 92 (138)
Q Consensus 37 ~~~~d~C~~C~~--~G~e~LL~Cd~~gCp-~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~ 92 (138)
..+..+| +|++ .|. +|.||.-.|| -.||..|++ ++-.|.|.||||.|..++
T Consensus 33 ~~e~~yC-iC~~~~~g~--MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 33 PNEPTYC-LCHQVSYGE--MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp SCCCBCS-TTCCBCCSC--CCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCCCcEE-ECCCCCCCC--EeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 3456788 8999 677 9999944499 589999999 666788999999998654
No 35
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=98.57 E-value=3.2e-08 Score=70.43 Aligned_cols=49 Identities=29% Similarity=0.693 Sum_probs=38.8
Q ss_pred CCccccccccccc--CCCccEEecCCCCCc-ccccccccCCCCccCCCCCccccc-cc
Q 037252 36 DFLEEEPCIKCNR--QRDENLLVCSQSGCP-ISVHENCLSCGVKFDDVGNFYCPY-CW 89 (138)
Q Consensus 36 ~~~~~d~C~~C~~--~G~e~LL~Cd~~gCp-~s~H~~Cl~~~~~~dd~G~fyCP~-C~ 89 (138)
+..+..+| +|+. .|+ ++.||.-.|| -.||..|++ ++..|.|.||||. |.
T Consensus 22 ~~~~~~yC-iC~~~~~g~--MI~CD~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~ 74 (90)
T 2jmi_A 22 NNQEEVYC-FCRNVSYGP--MVACDNPACPFEWFHYGCVG--LKQAPKGKWYCSKDCK 74 (90)
T ss_dssp --CCSCCS-TTTCCCSSS--EECCCSSSCSCSCEETTTSS--CSSCTTSCCCSSHHHH
T ss_pred CCCCCcEE-EeCCCCCCC--EEEecCCCCccccCcCccCC--CCcCCCCCccCChhhc
Confidence 34456688 7996 566 9999955588 589999999 6667889999999 85
No 36
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=98.53 E-value=1.3e-08 Score=73.41 Aligned_cols=48 Identities=25% Similarity=0.457 Sum_probs=38.7
Q ss_pred cccccccccCC-------C-ccEEecCCCCCcccccccccCCCCc---cCCCCCccccccc
Q 037252 40 EEPCIKCNRQR-------D-ENLLVCSQSGCPISVHENCLSCGVK---FDDVGNFYCPYCW 89 (138)
Q Consensus 40 ~d~C~~C~~~G-------~-e~LL~Cd~~gCp~s~H~~Cl~~~~~---~dd~G~fyCP~C~ 89 (138)
.++|..|..++ + +.||.|+ +||.+||.+|++.++. ..+.+.|+||.|.
T Consensus 1 ~~~C~~C~~~~~~n~k~g~~~~Li~C~--~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 1 GSYCDFCLGGSNMNKKSGRPEELVSCA--DCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCCSSSCCBTTBCTTTCCCCCCEECS--SSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CCcCccCCCCccccccCCCCCCCeEeC--CCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 36788897654 1 3599999 9999999999997643 3578999999984
No 37
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=98.35 E-value=6.5e-08 Score=69.45 Aligned_cols=49 Identities=24% Similarity=0.459 Sum_probs=39.1
Q ss_pred ccccccccccC------CC-ccEEecCCCCCcccccccccCCCCc---cCCCCCccccccc
Q 037252 39 EEEPCIKCNRQ------RD-ENLLVCSQSGCPISVHENCLSCGVK---FDDVGNFYCPYCW 89 (138)
Q Consensus 39 ~~d~C~~C~~~------G~-e~LL~Cd~~gCp~s~H~~Cl~~~~~---~dd~G~fyCP~C~ 89 (138)
..++|..|.++ |+ +.||.|+ +|+.+||.+||+.++. ..+.++|+||.|.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~--~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCA--DCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECT--TTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred cCccccccCCchhhCcCCCchhceEhh--hcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 46789999765 22 4699999 9999999999985432 3478999999996
No 38
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.25 E-value=4e-07 Score=61.51 Aligned_cols=48 Identities=29% Similarity=0.768 Sum_probs=38.0
Q ss_pred cccccccccc--CCCccEEecCCCCCc-ccccccccCCCCccCCCCCccccccchh
Q 037252 39 EEEPCIKCNR--QRDENLLVCSQSGCP-ISVHENCLSCGVKFDDVGNFYCPYCWYK 91 (138)
Q Consensus 39 ~~d~C~~C~~--~G~e~LL~Cd~~gCp-~s~H~~Cl~~~~~~dd~G~fyCP~C~yk 91 (138)
+.-+|+ |+. .|. ++.||.-.|| .-||..|++ ++-.|.+.||||.|.-+
T Consensus 5 ~~~yC~-C~~~~~g~--MI~CD~cdC~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~~ 55 (70)
T 1x4i_A 5 SSGYCI-CNQVSYGE--MVGCDNQDCPIEWFHYGCVG--LTEAPKGKWYCPQCTAA 55 (70)
T ss_dssp CCCCST-TSCCCCSS--EECCSCTTCSCCCEEHHHHT--CSSCCSSCCCCHHHHHH
T ss_pred CCeEEE-cCCCCCCC--EeEeCCCCCCccCCcccccc--cCcCCCCCEECCCCCcc
Confidence 456786 886 555 9999955587 689999999 55578999999999743
No 39
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=98.05 E-value=7.7e-07 Score=66.81 Aligned_cols=53 Identities=19% Similarity=0.449 Sum_probs=41.6
Q ss_pred cccccccccccCCC--ccEEecCCCCCcccccccccCCCCc-cCCCCCccccccchhhh
Q 037252 38 LEEEPCIKCNRQRD--ENLLVCSQSGCPISVHENCLSCGVK-FDDVGNFYCPYCWYKCE 93 (138)
Q Consensus 38 ~~~d~C~~C~~~G~--e~LL~Cd~~gCp~s~H~~Cl~~~~~-~dd~G~fyCP~C~yk~a 93 (138)
.+..+| +|+..++ ..++.|+ .|+.-||..|++.+.. .+..+.|+||.|.-+..
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd--~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 61 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCD--RCQNWYHGRCVGILQSEAELIDEYVCPQCQSTED 61 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECT--TTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECC--CCCchhChhhcCCchhhccCccCeecCCCcchhc
Confidence 456789 9998643 2499999 9999999999996543 35689999999987654
No 40
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=98.04 E-value=1.3e-06 Score=62.84 Aligned_cols=52 Identities=25% Similarity=0.517 Sum_probs=42.0
Q ss_pred CcccccccccccCCCccEEecCCCCCcccccccccCCC------------CccCCCCCccccccch
Q 037252 37 FLEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCG------------VKFDDVGNFYCPYCWY 90 (138)
Q Consensus 37 ~~~~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~------------~~~dd~G~fyCP~C~y 90 (138)
..+++.|-+|+.=..+.|++|. .|.++||..||... +.-...+-|.||+|-.
T Consensus 12 ~~~D~~C~VC~~~t~~~l~pCR--vC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Cen 75 (89)
T 1wil_A 12 VVNDEMCDVCEVWTAESLFPCR--VCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDN 75 (89)
T ss_dssp CCCSCCCTTTCCCCSSCCSSCS--SSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCC
T ss_pred CCCCcccCccccccccceeccc--cccccccHhhcccccccccHHHHHHHHccCCCCCccccccch
Confidence 4578999999943334499999 99999999999863 4445889999999953
No 41
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=98.02 E-value=6e-06 Score=55.06 Aligned_cols=63 Identities=22% Similarity=0.393 Sum_probs=43.4
Q ss_pred CCCCCCCcCCCcccccccccccCCC--ccEEecCCCCCcccccccccCCCCccCCCCCccccccchhh
Q 037252 27 GRSGDFTDVDFLEEEPCIKCNRQRD--ENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKC 92 (138)
Q Consensus 27 ~~~~~~~~~~~~~~d~C~~C~~~G~--e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~ 92 (138)
+.|....+.+-.+.-+|+ |+...+ +..+.|+ .|-.=||..|++....-.....||||.|.-+.
T Consensus 3 ~~~~~~e~~~~~~~~~C~-C~~~~~~g~~mI~Cd--~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~ 67 (72)
T 1wee_A 3 SGSSGMERGVDNWKVDCK-CGTKDDDGERMLACD--GCGVWHHTRCIGINNADALPSKFLCFRCIELS 67 (72)
T ss_dssp CCSCCCSCSSCSSEECCT-TCCCSCCSSCEEECS--SSCEEEETTTTTCCTTSCCCSCCCCHHHHHHC
T ss_pred CccccccCCCCCcceEee-CCCccCCCCcEEECC--CCCCccCCeeeccCccccCCCcEECCCccCCC
Confidence 333333333344456895 997632 2489999 99999999999976433346899999997543
No 42
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=98.00 E-value=4.1e-06 Score=56.88 Aligned_cols=57 Identities=19% Similarity=0.465 Sum_probs=41.1
Q ss_pred CCCcccccccccccCCC-ccEEecCCCCCcccccccccCCCCcc-----CCCCCccccccchhh
Q 037252 35 VDFLEEEPCIKCNRQRD-ENLLVCSQSGCPISVHENCLSCGVKF-----DDVGNFYCPYCWYKC 92 (138)
Q Consensus 35 ~~~~~~d~C~~C~~~G~-e~LL~Cd~~gCp~s~H~~Cl~~~~~~-----dd~G~fyCP~C~yk~ 92 (138)
.+..+.-+| +|+.... ...+.|+...|+.=||..|++.+..- .....||||.|..++
T Consensus 11 ~~~~~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 11 FQPEIKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp SSCCCCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred cCCCCCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 333456788 5998621 23889998899999999999954332 234799999997654
No 43
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=97.93 E-value=3.7e-06 Score=54.51 Aligned_cols=54 Identities=20% Similarity=0.492 Sum_probs=41.6
Q ss_pred cccccccccccCCC--ccEEecCCCCCcccccccccCCCCcc-CCCCCccccccchhhh
Q 037252 38 LEEEPCIKCNRQRD--ENLLVCSQSGCPISVHENCLSCGVKF-DDVGNFYCPYCWYKCE 93 (138)
Q Consensus 38 ~~~d~C~~C~~~G~--e~LL~Cd~~gCp~s~H~~Cl~~~~~~-dd~G~fyCP~C~yk~a 93 (138)
.+..+|.+|++.-+ +..+.|+ .|..=||..|++.+..- +..+.|+||.|.-+++
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd--~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~~ 60 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCD--LCEMWFHGKCVKITPARAEHIKQYKCPSCSNKSG 60 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECS--SSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTTC
T ss_pred CCCCCCCCCCCccCCCCCEEEcc--CCCCCCCccccCcChhHhcCCCcEECCCCcCcCC
Confidence 45678999987532 3489999 99999999999965432 2358999999987654
No 44
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=97.75 E-value=1.2e-05 Score=57.72 Aligned_cols=58 Identities=19% Similarity=0.465 Sum_probs=41.2
Q ss_pred cccccccccC--CCccEEecCCCCCcccccccccCCCCcc------CCCCCccccccchhhhhhHHH
Q 037252 40 EEPCIKCNRQ--RDENLLVCSQSGCPISVHENCLSCGVKF------DDVGNFYCPYCWYKCELMRTK 98 (138)
Q Consensus 40 ~d~C~~C~~~--G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~------dd~G~fyCP~C~yk~a~~~~~ 98 (138)
...|.+|++. .+...+.|+ .+|..=||..|++-+... ++.+.|+||.|.-+.......
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cd-d~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~~~~~~ 68 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCE-ASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKEGSGSG 68 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECT-TTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTTTC---
T ss_pred cCCCCCCCCccCCCCCEEEec-CCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCCCCCCC
Confidence 3579999987 112377776 499999999999954321 577999999999876654433
No 45
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=97.73 E-value=3e-05 Score=51.33 Aligned_cols=54 Identities=22% Similarity=0.505 Sum_probs=36.9
Q ss_pred ccccccccccCCC-ccEEecCCCCCcccccccccCCCCccC----CCCCccccccchhhh
Q 037252 39 EEEPCIKCNRQRD-ENLLVCSQSGCPISVHENCLSCGVKFD----DVGNFYCPYCWYKCE 93 (138)
Q Consensus 39 ~~d~C~~C~~~G~-e~LL~Cd~~gCp~s~H~~Cl~~~~~~d----d~G~fyCP~C~yk~a 93 (138)
+.-.| +|+...+ ...+.|++..|..=||..|++.+..-. ....||||.|..+++
T Consensus 9 ~~v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~~r~ 67 (68)
T 2rsd_A 9 AKVRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRLSRA 67 (68)
T ss_dssp CEECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHHHHT
T ss_pred CCEEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccCccc
Confidence 34567 4866422 238999955699999999999543221 224799999986653
No 46
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=97.72 E-value=2.3e-05 Score=52.43 Aligned_cols=50 Identities=18% Similarity=0.411 Sum_probs=38.7
Q ss_pred cccccccccccCCC-ccEEecCCCCCcccccccccCCCCccCCCCCccccccchh
Q 037252 38 LEEEPCIKCNRQRD-ENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYK 91 (138)
Q Consensus 38 ~~~d~C~~C~~~G~-e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk 91 (138)
.+.-+| +|+...+ +..+.|+ .|..=||..|++.+.. ...+.|+||.|.-+
T Consensus 17 ~~~~~C-iC~~~~~~~~MIqCd--~C~~WfH~~Cvgi~~~-~~~~~~~C~~C~~s 67 (68)
T 3o70_A 17 QGLVTC-FCMKPFAGRPMIECN--ECHTWIHLSCAKIRKS-NVPEVFVCQKCRDS 67 (68)
T ss_dssp TTCCCS-TTCCCCTTCCEEECT--TTCCEEETTTTTCCTT-SCCSSCCCHHHHTC
T ss_pred CCceEe-ECCCcCCCCCEEECC--CCCccccccccCcCcc-cCCCcEECCCCCCC
Confidence 345678 8988654 3499999 8999999999997654 33479999999643
No 47
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.56 E-value=2e-05 Score=52.78 Aligned_cols=50 Identities=18% Similarity=0.539 Sum_probs=38.0
Q ss_pred cccccccccCCC-ccEEecCCCCCcccccccccCCCCcc-----CCCCCccccccchhh
Q 037252 40 EEPCIKCNRQRD-ENLLVCSQSGCPISVHENCLSCGVKF-----DDVGNFYCPYCWYKC 92 (138)
Q Consensus 40 ~d~C~~C~~~G~-e~LL~Cd~~gCp~s~H~~Cl~~~~~~-----dd~G~fyCP~C~yk~ 92 (138)
.-+| +|+.... +..+.|+ .|..=||..|++.+..- +....|+||.|..++
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd--~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCD--RCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECS--SSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCEE-ECCCccCCCCEEEeC--CCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 4678 6998744 2489999 99999999999964332 135899999997543
No 48
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=97.21 E-value=0.00017 Score=48.73 Aligned_cols=50 Identities=20% Similarity=0.456 Sum_probs=37.5
Q ss_pred cccccccccCC--CccEEecCCCCCcccccccccCCCCcc-CCCCCccccccchhh
Q 037252 40 EEPCIKCNRQR--DENLLVCSQSGCPISVHENCLSCGVKF-DDVGNFYCPYCWYKC 92 (138)
Q Consensus 40 ~d~C~~C~~~G--~e~LL~Cd~~gCp~s~H~~Cl~~~~~~-dd~G~fyCP~C~yk~ 92 (138)
.-+| +|+... ....+.|+ .|..=||..|++.+..- +....|+||.|.-+.
T Consensus 12 ~~~C-~C~~~~d~~~~MIqCd--~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHFMIECG--LCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBT--TTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred ccEE-EcCCccCCCCceEEcC--CCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 4567 788753 23489999 99999999999964432 335899999998654
No 49
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=97.11 E-value=9.9e-05 Score=49.10 Aligned_cols=50 Identities=18% Similarity=0.491 Sum_probs=38.8
Q ss_pred ccccccccccCCC--ccEEecCCCCCcccccccccCCCCcc------CCCCCccccccc
Q 037252 39 EEEPCIKCNRQRD--ENLLVCSQSGCPISVHENCLSCGVKF------DDVGNFYCPYCW 89 (138)
Q Consensus 39 ~~d~C~~C~~~G~--e~LL~Cd~~gCp~s~H~~Cl~~~~~~------dd~G~fyCP~C~ 89 (138)
....|.+|++.-. +..+.||+ +|..=||..|++-+... ++.+.|+||.|.
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~-~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEA-SCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTT-TTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred CcCcCccCCCccCCCCCeEeccc-CccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 4678999998632 46889995 99999999999965431 478899999995
No 50
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=96.95 E-value=0.0002 Score=45.14 Aligned_cols=47 Identities=19% Similarity=0.562 Sum_probs=34.1
Q ss_pred cccccccCCC--ccEEecCCCCCcccccccccCCCCccCCCCCccccccc
Q 037252 42 PCIKCNRQRD--ENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCW 89 (138)
Q Consensus 42 ~C~~C~~~G~--e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~ 89 (138)
.|-+|++.-+ +..+.|++ .|..=||..|++.+..-.+.+.|+||.|.
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~-~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDG-GCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTT-TTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCC-CCCccCcccccCCCccccCCCCEECCCCC
Confidence 3566776532 34889996 79999999999965443234899999984
No 51
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=96.45 E-value=0.0019 Score=50.45 Aligned_cols=53 Identities=19% Similarity=0.475 Sum_probs=39.2
Q ss_pred ccccccccCCCc-----cEEecCCCCCcccccccccCCCCc----c---CCCCCccccccchhhhhh
Q 037252 41 EPCIKCNRQRDE-----NLLVCSQSGCPISVHENCLSCGVK----F---DDVGNFYCPYCWYKCELM 95 (138)
Q Consensus 41 d~C~~C~~~G~e-----~LL~Cd~~gCp~s~H~~Cl~~~~~----~---dd~G~fyCP~C~yk~a~~ 95 (138)
++|.+|++.-++ ..+.|| +|-.=||.+|++.+.. . .+...|+||.|.-+....
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd--~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~~~ 67 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCG--KCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHPAE 67 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECT--TTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSSCH
T ss_pred CcCCCCcCccCCcccCCCeEECC--CCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCCHH
Confidence 578888875331 389999 9999999999995431 0 123589999999876653
No 52
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=96.27 E-value=0.0026 Score=39.84 Aligned_cols=45 Identities=20% Similarity=0.515 Sum_probs=33.6
Q ss_pred ccccccccCCC-ccEEecCCCCCcccccccccCCCCccCCCCCccccccc
Q 037252 41 EPCIKCNRQRD-ENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCW 89 (138)
Q Consensus 41 d~C~~C~~~G~-e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~ 89 (138)
-.| +|+...+ +..+.|+ .|..=||..|++.+.. .....|+||.|.
T Consensus 5 ~~C-~C~~~~~~~~MI~Cd--~C~~W~H~~Cvgi~~~-~~~~~~~C~~C~ 50 (52)
T 3o7a_A 5 VTC-FCMKPFAGRPMIECN--ECHTWIHLSCAKIRKS-NVPEVFVCQKCR 50 (52)
T ss_dssp BCS-TTCCBCTTCCEEECT--TTCCEEETTTTTCCGG-GCCSSCCCHHHH
T ss_pred eEE-EeCCcCCCCCEEEcC--CCCccccccccCCCcc-cCCCcEECcCCC
Confidence 344 3666433 2499999 8999999999997654 334799999995
No 53
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=96.11 E-value=0.0019 Score=45.54 Aligned_cols=38 Identities=26% Similarity=0.575 Sum_probs=28.8
Q ss_pred ccEEecCCCCCcccccccccCCCCcc----CCCCCccccccchh
Q 037252 52 ENLLVCSQSGCPISVHENCLSCGVKF----DDVGNFYCPYCWYK 91 (138)
Q Consensus 52 e~LL~Cd~~gCp~s~H~~Cl~~~~~~----dd~G~fyCP~C~yk 91 (138)
+.||.|+ .|...||..|++..... +....|+||.|.-.
T Consensus 73 ~~m~~C~--~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~~ 114 (117)
T 4bbq_A 73 KKLMECC--ICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQE 114 (117)
T ss_dssp GSCEEET--TTCCEECGGGCCSCCCCEECSSSSSEEECTTTC--
T ss_pred cceEEee--ecCCeEECCCCCCCccccccccCCCCeECCCCcCC
Confidence 3699999 99999999999975432 23456999999743
No 54
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=95.89 E-value=0.0027 Score=42.41 Aligned_cols=47 Identities=21% Similarity=0.542 Sum_probs=34.4
Q ss_pred cccccccCC--CccEEecCCCCCcccccccccCCCCcc-CCCCCccccccchh
Q 037252 42 PCIKCNRQR--DENLLVCSQSGCPISVHENCLSCGVKF-DDVGNFYCPYCWYK 91 (138)
Q Consensus 42 ~C~~C~~~G--~e~LL~Cd~~gCp~s~H~~Cl~~~~~~-dd~G~fyCP~C~yk 91 (138)
+| +|+... ++..+.|+ .|..=||..|++.+..- .....|+||.|.-+
T Consensus 12 yC-iC~~~~~~~~~MI~Cd--~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 12 YC-VCRLPYDVTRFMIECD--ACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp ET-TTTEECCTTSCEEECT--TTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred EE-ECCCcCCCCCCEEEcC--CCCCCEecccccccccccCCCCEEECCCCccc
Confidence 45 687742 23599999 89999999999965332 22368999999754
No 55
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=95.55 E-value=0.0068 Score=54.48 Aligned_cols=36 Identities=22% Similarity=0.399 Sum_probs=29.4
Q ss_pred EEecCCCCCcccccccccCCCCcc-CCCCCccccccchh
Q 037252 54 LLVCSQSGCPISVHENCLSCGVKF-DDVGNFYCPYCWYK 91 (138)
Q Consensus 54 LL~Cd~~gCp~s~H~~Cl~~~~~~-dd~G~fyCP~C~yk 91 (138)
.+.|| .|.-=||..|++.+..- +..+.||||.|.-.
T Consensus 58 mI~CD--~C~~WfH~~CVgi~~~~a~~~~~y~Cp~C~~~ 94 (528)
T 3pur_A 58 WIGCD--SCQTWYHFLCSGLEQFEYYLYEKFFCPKCVPH 94 (528)
T ss_dssp EEECT--TTCCEEEGGGTTCCGGGTTTEEECCCTTTHHH
T ss_pred EEECC--CCCcCCCCcCCCCChhHhcCCCeEECcCCcCC
Confidence 57899 99999999999965443 34589999999853
No 56
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=95.29 E-value=0.0032 Score=55.38 Aligned_cols=51 Identities=20% Similarity=0.480 Sum_probs=37.0
Q ss_pred ccccccccccCC--CccEEecCCCCCcccccccccCCCCcc-CCCCCccccccchhh
Q 037252 39 EEEPCIKCNRQR--DENLLVCSQSGCPISVHENCLSCGVKF-DDVGNFYCPYCWYKC 92 (138)
Q Consensus 39 ~~d~C~~C~~~G--~e~LL~Cd~~gCp~s~H~~Cl~~~~~~-dd~G~fyCP~C~yk~ 92 (138)
+.-+| .|+... ....+.|+ .|.-=||..|++-+..- +..+.|+||.|.-+.
T Consensus 36 ~~~yC-~C~~~~d~~~~MIqCd--~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 89 (488)
T 3kv5_D 36 PPVYC-VCRQPYDVNRFMIECD--ICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLH 89 (488)
T ss_dssp CCEET-TTTEECCTTSCEEEBT--TTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHHH
T ss_pred CCeEE-eCCCcCCCCCCeEEcc--CCCCceeeeecCcCcccccCCCEEECCCCcCCc
Confidence 34467 788742 13489999 89999999999965432 234789999998543
No 57
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=95.04 E-value=0.015 Score=42.09 Aligned_cols=40 Identities=18% Similarity=0.369 Sum_probs=34.7
Q ss_pred ccccccccCCCccEEecCCCCCcccccccccCCCCccCCCCCccc
Q 037252 41 EPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYC 85 (138)
Q Consensus 41 d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyC 85 (138)
-.|..|++... +.|. .||.|||..|+...+...+...|+|
T Consensus 59 c~C~~C~k~~~---~~C~--~Cp~sfC~~c~~g~l~~~~~~~~~c 98 (107)
T 4gne_A 59 HQCDECSSAAV---SFCE--FCPHSFCKDHEKGALVPSALEGRLC 98 (107)
T ss_dssp GBCTTTCSBCC---EECS--SSSCEECTTTCTTSCEECTTTTCEE
T ss_pred CCCCcCCCCCC---cCcC--CCCcchhhhccCCcceecCCCCcee
Confidence 46888888775 7899 9999999999999888888888887
No 58
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=95.00 E-value=0.0012 Score=42.62 Aligned_cols=54 Identities=26% Similarity=0.425 Sum_probs=38.6
Q ss_pred cccccccccccCCC-ccEEecCCCCCcccccccccCCCCccCCCCCccccccchhhh
Q 037252 38 LEEEPCIKCNRQRD-ENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKCE 93 (138)
Q Consensus 38 ~~~d~C~~C~~~G~-e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~a 93 (138)
.+.+.|++|-.+++ +-+++|.=.|.-..||..||.. =+..+|+..||.|.+...
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~--W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLST--WLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHH--HHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHH--HHHhCCCCccCCCCCeee
Confidence 35678999976654 3457765336666999999983 334567899999987654
No 59
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=94.68 E-value=0.009 Score=46.40 Aligned_cols=58 Identities=21% Similarity=0.390 Sum_probs=45.2
Q ss_pred CCcCCCcccccccccccCCCccEEecCCCCCcccccccccCC--CC----ccCCCCCccccccchh
Q 037252 32 FTDVDFLEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSC--GV----KFDDVGNFYCPYCWYK 91 (138)
Q Consensus 32 ~~~~~~~~~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~--~~----~~dd~G~fyCP~C~yk 91 (138)
+.-.+..-+.+|..|+.+|+ ||.||...|+.+|=.+|+.. ++ ....+..|.|=.|.-+
T Consensus 71 f~~DeDG~~~yC~wC~~Gg~--l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~ 134 (159)
T 3a1b_A 71 YQYDDDGYQSYCTICCGGRE--VLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHK 134 (159)
T ss_dssp TCBCTTSSBSSCTTTSCCSE--EEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSS
T ss_pred cccCCCCCcceeeEecCCCe--EEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCCc
Confidence 33344555789999999999 99999889999999999863 22 1246889999888743
No 60
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.88 E-value=0.0079 Score=40.73 Aligned_cols=55 Identities=22% Similarity=0.450 Sum_probs=37.1
Q ss_pred cccccccccccCCC---ccEEecCCCCCcccccccccCCCCccCCCCCccccccchhhhh
Q 037252 38 LEEEPCIKCNRQRD---ENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKCEL 94 (138)
Q Consensus 38 ~~~d~C~~C~~~G~---e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~a~ 94 (138)
.+++.|.+|-.+.+ .-+++|.-.|.-..||..||..= +.-.++..||.|.+....
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~W--l~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQW--IKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHH--HHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHH--HhhCCCCCCCCCCCeeec
Confidence 34689999986543 23445653355699999999832 223456899999877654
No 61
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=93.70 E-value=0.014 Score=50.69 Aligned_cols=58 Identities=21% Similarity=0.391 Sum_probs=45.5
Q ss_pred CCcCCCcccccccccccCCCccEEecCCCCCcccccccccCCC--Cc----cCCCCCccccccchh
Q 037252 32 FTDVDFLEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCG--VK----FDDVGNFYCPYCWYK 91 (138)
Q Consensus 32 ~~~~~~~~~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~--~~----~dd~G~fyCP~C~yk 91 (138)
+.-.+..-+.+|..|+.+|+ |++||...|+.+|=..|+..- +. ......|.|=.|.-+
T Consensus 85 f~~D~DG~~~yCr~C~~Gg~--l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 85 FLYDDDGYQSYCSICCSGET--LLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp TCBCSSSSBCSCTTTCCCSS--CEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred cccCCCCCcccceEcCCCCe--EEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 33334555789999999999 999999999999999998731 12 235689999999854
No 62
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=90.00 E-value=0.041 Score=48.15 Aligned_cols=45 Identities=22% Similarity=0.490 Sum_probs=34.2
Q ss_pred ccccC----CCccEEecCCCCCcccccccccCCCCcc-CCCCCccccccchhhh
Q 037252 45 KCNRQ----RDENLLVCSQSGCPISVHENCLSCGVKF-DDVGNFYCPYCWYKCE 93 (138)
Q Consensus 45 ~C~~~----G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~-dd~G~fyCP~C~yk~a 93 (138)
.|+.. |. .+.|+ .|.-=||..|++-+..- .+.+.|+||.|.-+..
T Consensus 9 iC~~~~d~~~~--MIqCD--~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~~ 58 (447)
T 3kv4_A 9 LCRLPYDVTRF--MIECD--MCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHG 58 (447)
T ss_dssp TTTEECCTTSC--EEECT--TTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHHC
T ss_pred eCCCcCCCCCC--eEEcC--CCCcccccccCCcCcccccCCCEEECCCCccccC
Confidence 67763 55 99999 99999999999965433 2347899999986543
No 63
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.78 E-value=0.39 Score=32.27 Aligned_cols=49 Identities=22% Similarity=0.452 Sum_probs=35.3
Q ss_pred ccccccccccCCCccEEecCCCCCcccccccccCCCCccCCCCCccccccchhh
Q 037252 39 EEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKC 92 (138)
Q Consensus 39 ~~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~ 92 (138)
..+.|.+|..--..+ +.|. .|...||..|+.. -+.-.+.--||.|....
T Consensus 14 ~i~~C~IC~~~i~~g-~~C~--~C~h~fH~~Ci~k--Wl~~~~~~~CP~Cr~~w 62 (74)
T 2ct0_A 14 AVKICNICHSLLIQG-QSCE--TCGIRMHLPCVAK--YFQSNAEPRCPHCNDYW 62 (74)
T ss_dssp SSCBCSSSCCBCSSS-EECS--SSCCEECHHHHHH--HSTTCSSCCCTTTCSCC
T ss_pred CCCcCcchhhHcccC-CccC--CCCchhhHHHHHH--HHHhcCCCCCCCCcCcC
Confidence 357899999766533 4788 9999999999983 22333446799997543
No 64
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=87.52 E-value=0.2 Score=34.55 Aligned_cols=31 Identities=19% Similarity=0.633 Sum_probs=26.8
Q ss_pred cccccccccC--CCccEEecCCCCCcccccccccC
Q 037252 40 EEPCIKCNRQ--RDENLLVCSQSGCPISVHENCLS 72 (138)
Q Consensus 40 ~d~C~~C~~~--G~e~LL~Cd~~gCp~s~H~~Cl~ 72 (138)
.-.|..|+.. |- -+.|+...|..+||..|.-
T Consensus 17 ~l~C~iC~~~~~GA--ciqC~~~~C~~~fHv~CA~ 49 (87)
T 2lq6_A 17 KLTCYLCKQKGVGA--SIQCHKANCYTAFHVTCAQ 49 (87)
T ss_dssp CCCBTTTTBCCSSC--EEECSCTTTCCEEEHHHHH
T ss_pred cCCCcCCCCCCCcE--eEecCCCCCCCcCcHHHHH
Confidence 3579999864 77 9999999999999999975
No 65
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.77 E-value=0.59 Score=29.05 Aligned_cols=51 Identities=22% Similarity=0.428 Sum_probs=34.7
Q ss_pred CcccccccccccCCCccEEecCCCCCcccccccccCCCCccCCCCCccccccchhh
Q 037252 37 FLEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKC 92 (138)
Q Consensus 37 ~~~~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~ 92 (138)
..++..|.+|...-.+-++. .|--.||..|+..-+. ...+...||.|....
T Consensus 17 ~~~~~~C~IC~~~~~~~~~~----~CgH~fC~~Ci~~~~~-~~~~~~~CP~Cr~~~ 67 (73)
T 2ysl_A 17 LQEEVICPICLDILQKPVTI----DCGHNFCLKCITQIGE-TSCGFFKCPLCKTSV 67 (73)
T ss_dssp CCCCCBCTTTCSBCSSEEEC----TTCCEEEHHHHHHHCS-SSCSCCCCSSSCCCC
T ss_pred CccCCEeccCCcccCCeEEc----CCCChhhHHHHHHHHH-cCCCCCCCCCCCCcC
Confidence 45567899999876532222 4668899999984322 235788999997654
No 66
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=84.07 E-value=1.3 Score=28.41 Aligned_cols=52 Identities=17% Similarity=0.240 Sum_probs=34.5
Q ss_pred CcccccccccccCCCccEEecCCCCCcccccccccCCC---C------ccCCCCCccccccchhh
Q 037252 37 FLEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCG---V------KFDDVGNFYCPYCWYKC 92 (138)
Q Consensus 37 ~~~~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~---~------~~dd~G~fyCP~C~yk~ 92 (138)
......|..|++.-....|.-. + ..||..|+... . -+...|..||..|..+.
T Consensus 12 ~~~~~~C~~C~~~I~~~~~~a~--~--~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~ 72 (79)
T 1x62_A 12 AQKLPMCDKCGTGIVGVFVKLR--D--RHRHPECYVCTDCGTNLKQKGHFFVEDQIYCEKHARER 72 (79)
T ss_dssp CCCCCCCSSSCCCCCSSCEECS--S--CEECTTTTSCSSSCCCHHHHCCEESSSCEECHHHHHHH
T ss_pred CCCCCccccCCCCccCcEEEEC--c--ceeCcCcCeeCCCCCCCCCCCeEeECCEEECHHHHHHH
Confidence 3456899999986543355444 2 68999888752 1 23466889999887543
No 67
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=82.91 E-value=0.9 Score=28.73 Aligned_cols=50 Identities=18% Similarity=0.356 Sum_probs=30.8
Q ss_pred CCcccccccccccCCC--ccEEecCCCCCcccccccccCCCCccCCCCCccccccchhh
Q 037252 36 DFLEEEPCIKCNRQRD--ENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKC 92 (138)
Q Consensus 36 ~~~~~d~C~~C~~~G~--e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~ 92 (138)
...++..|.+|-..-. +.+.. - .|--.||..|+..-+. ....||+|....
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~-~--~C~H~fc~~Ci~~~~~----~~~~CP~Cr~~~ 62 (78)
T 2ect_A 11 HVGSGLECPVCKEDYALGESVRQ-L--PCNHLFHDSCIVPWLE----QHDSCPVCRKSL 62 (78)
T ss_dssp TSSSSCCCTTTTSCCCTTSCEEE-C--TTSCEEETTTTHHHHT----TTCSCTTTCCCC
T ss_pred cCCCCCCCeeCCccccCCCCEEE-e--CCCCeecHHHHHHHHH----cCCcCcCcCCcc
Confidence 3455789999965432 11211 1 3558899999974322 235899997553
No 68
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=82.34 E-value=0.35 Score=32.99 Aligned_cols=35 Identities=20% Similarity=0.506 Sum_probs=27.4
Q ss_pred EEecCCCCCcccccccccCCCC-------ccCCCCCccccccch
Q 037252 54 LLVCSQSGCPISVHENCLSCGV-------KFDDVGNFYCPYCWY 90 (138)
Q Consensus 54 LL~Cd~~gCp~s~H~~Cl~~~~-------~~dd~G~fyCP~C~y 90 (138)
.+.|| .|--=||.+|++.+. .+.++-.|.||.|.-
T Consensus 2 mi~c~--~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~ 43 (140)
T 2ku7_A 2 MMQCG--KCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTE 43 (140)
T ss_dssp CCCCS--CCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTT
T ss_pred ccccc--cCCCccCCcccccCHHHHHHHhhccccceeeCccccc
Confidence 46799 999999999998542 223466899999974
No 69
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=79.92 E-value=0.64 Score=28.84 Aligned_cols=47 Identities=26% Similarity=0.572 Sum_probs=33.1
Q ss_pred CcccccccccccCCCccEEecCCCCCcccccccccCCCCccCCCCCccccccchhh
Q 037252 37 FLEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKC 92 (138)
Q Consensus 37 ~~~~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~ 92 (138)
..++..|.+|-..-.+.++. |--.||..|+..-+. ....||.|....
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~-----CgH~fc~~Ci~~~~~----~~~~CP~Cr~~~ 58 (70)
T 2ecn_A 12 LTDEEECCICMDGRADLILP-----CAHSFCQKCIDKWSD----RHRNCPICRLQM 58 (70)
T ss_dssp CCCCCCCSSSCCSCCSEEET-----TTEEECHHHHHHSSC----CCSSCHHHHHCT
T ss_pred CCCCCCCeeCCcCccCcccC-----CCCcccHHHHHHHHH----CcCcCCCcCCcc
Confidence 34567899998876643444 558899999974322 578899996543
No 70
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=78.87 E-value=1 Score=26.54 Aligned_cols=47 Identities=17% Similarity=0.480 Sum_probs=31.1
Q ss_pred ccccccccccCCCc--cEEecCCCCCcccccccccCCCCccCCCCCccccccchh
Q 037252 39 EEEPCIKCNRQRDE--NLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYK 91 (138)
Q Consensus 39 ~~d~C~~C~~~G~e--~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk 91 (138)
++..|.+|-..-.+ .+..-. .|--.||..|+..-+. ....||.|...
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~--~C~H~f~~~Ci~~w~~----~~~~CP~Cr~~ 52 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLP--RCGHGFHAECVDMWLG----SHSTCPLCRLT 52 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECS--SSCCEECTTHHHHTTT----TCCSCSSSCCC
T ss_pred CCCcCccCCccccCCCceEECC--CCCCcccHHHHHHHHH----cCCcCcCCCCE
Confidence 45789999766431 233333 5778999999974332 24579999754
No 71
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=78.42 E-value=0.2 Score=34.04 Aligned_cols=32 Identities=25% Similarity=0.414 Sum_probs=21.8
Q ss_pred CCcccccccccCCCCccC-CCCCccccccchhh
Q 037252 61 GCPISVHENCLSCGVKFD-DVGNFYCPYCWYKC 92 (138)
Q Consensus 61 gCp~s~H~~Cl~~~~~~d-d~G~fyCP~C~yk~ 92 (138)
.|--.||..|+..-+... ..+...||.|....
T Consensus 60 ~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~ 92 (114)
T 1v87_A 60 KCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIY 92 (114)
T ss_dssp SSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBS
T ss_pred CCCCcccHHHHHHHHHcccCCCCCcCCCCCCcc
Confidence 455899999998433221 24678999997543
No 72
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=77.58 E-value=0.53 Score=34.07 Aligned_cols=52 Identities=21% Similarity=0.393 Sum_probs=1.0
Q ss_pred ccccccccccCCCccEEecCC--------------CCCcccccccccCCCCccCCCCCccccccchhhhh
Q 037252 39 EEEPCIKCNRQRDENLLVCSQ--------------SGCPISVHENCLSCGVKFDDVGNFYCPYCWYKCEL 94 (138)
Q Consensus 39 ~~d~C~~C~~~G~e~LL~Cd~--------------~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~a~ 94 (138)
++|.|.+|...=.+.-..|-. ..|--.||..|+..=+.. +..||.|......
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~----~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT----RQVCPLDNREWEF 112 (117)
T ss_dssp CC--------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc----CCcCCCCCCeeee
Confidence 458899997664321122221 146678999999854433 4679999866443
No 73
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.12 E-value=0.92 Score=27.60 Aligned_cols=47 Identities=23% Similarity=0.486 Sum_probs=31.3
Q ss_pred CcccccccccccCCCccEEecCCCCCcccccccccCCCCccCCCCCcccccc
Q 037252 37 FLEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYC 88 (138)
Q Consensus 37 ~~~~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C 88 (138)
..++..|.+|...=.+-++. .|--.||..|+..-+.. ..+...||.|
T Consensus 17 ~~~~~~C~IC~~~~~~p~~~----~CgH~fC~~Ci~~~~~~-~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQKPVTI----DCGHNFCLKCITQIGET-SCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSSCEEC----TTSSEECHHHHHHHHHH-CSSCCCCSCC
T ss_pred CccCCCCCcCCchhCCeEEe----CCCCcchHHHHHHHHHc-CCCCCcCcCC
Confidence 45577899998765532322 46688999999743221 3467789988
No 74
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=76.11 E-value=1.2 Score=28.31 Aligned_cols=51 Identities=18% Similarity=0.481 Sum_probs=34.2
Q ss_pred CCcccccccccccCCCccEEecCCCCCcccccccccCCCCccCCCCCccccccchh
Q 037252 36 DFLEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYK 91 (138)
Q Consensus 36 ~~~~~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk 91 (138)
...++..|.+|...=.+-++ -. .|--.||..|+..- +...+...||.|...
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~-~~--~CgH~fC~~Ci~~~--~~~~~~~~CP~Cr~~ 61 (74)
T 2yur_A 11 PIPDELLCLICKDIMTDAVV-IP--CCGNSYCDECIRTA--LLESDEHTCPTCHQN 61 (74)
T ss_dssp CSCGGGSCSSSCCCCTTCEE-CS--SSCCEECTTHHHHH--HHHSSSSCCSSSCCS
T ss_pred cCCCCCCCcCCChHHhCCeE-cC--CCCCHHHHHHHHHH--HHhcCCCcCCCCCCc
Confidence 34567889999876553333 11 37789999999732 233456889999764
No 75
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=75.93 E-value=0.65 Score=28.72 Aligned_cols=50 Identities=24% Similarity=0.328 Sum_probs=29.9
Q ss_pred CcccccccccccCCCc-cEEecCCCCCcccccccccCCCCccCCCCCccccccchhh
Q 037252 37 FLEEEPCIKCNRQRDE-NLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKC 92 (138)
Q Consensus 37 ~~~~d~C~~C~~~G~e-~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~ 92 (138)
..++..|.+|-..-.. .-+..- .|--.||..|+..-+.. +..||.|....
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~--~C~H~fc~~Ci~~~~~~----~~~CP~Cr~~~ 61 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRL--PCMHLFHQVCVDQWLIT----NKKCPICRVDI 61 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEEC--TTSCEEEHHHHHHHHHH----CSBCTTTCSBS
T ss_pred CCCCCCCeeCCccccCCCcEEEe--CCCCHHHHHHHHHHHHc----CCCCcCcCccc
Confidence 3456789999553210 022223 46789999999743222 23599997543
No 76
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=75.41 E-value=2.4 Score=33.22 Aligned_cols=44 Identities=18% Similarity=0.233 Sum_probs=30.9
Q ss_pred cccCCC--ccEEecCCCCCcccccccccCCCCcc-CC---CCCccccccchh
Q 037252 46 CNRQRD--ENLLVCSQSGCPISVHENCLSCGVKF-DD---VGNFYCPYCWYK 91 (138)
Q Consensus 46 C~~~G~--e~LL~Cd~~gCp~s~H~~Cl~~~~~~-dd---~G~fyCP~C~yk 91 (138)
|+++|+ ..-|.|+ +|-.-||..|+...... .| -=.|.|-.|.-.
T Consensus 10 CG~~~~~~~~mLqC~--~C~qWFH~~Cl~~~~~~~lp~~~fY~F~C~~C~~~ 59 (177)
T 3rsn_A 10 EENGRQLGEVELQCG--ICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHS 59 (177)
T ss_dssp -CTTCCTTSCEEECT--TTCCEEEGGGGTCCCTTCCTTCCSEEEECTTTSTT
T ss_pred cCCCCCCCceeEeec--cccceecHHHhcccccCccccceeEEEEccccCCC
Confidence 788776 3578999 99999999999854322 22 223559999764
No 77
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=74.79 E-value=1.7 Score=29.53 Aligned_cols=30 Identities=37% Similarity=0.987 Sum_probs=21.8
Q ss_pred cccccccccCCCccEEecCCCCCcccccccccCCCCccCCCCCccccccchh
Q 037252 40 EEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYK 91 (138)
Q Consensus 40 ~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk 91 (138)
..-|.+|+.+.. |.|- || .|+.||+.||..
T Consensus 8 ~pWC~ICneDAt---lrC~--gC-----------------dgDLYC~rC~rE 37 (67)
T 2d8v_A 8 LPWCCICNEDAT---LRCA--GC-----------------DGDLYCARCFRE 37 (67)
T ss_dssp CSSCTTTCSCCC---EEET--TT-----------------TSEEECSSHHHH
T ss_pred CCeeEEeCCCCe---EEec--CC-----------------CCceehHHHHHH
Confidence 456899998864 6776 55 257899999843
No 78
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=74.12 E-value=0.94 Score=36.04 Aligned_cols=49 Identities=22% Similarity=0.456 Sum_probs=36.3
Q ss_pred cccccccccCCCccEEecCCCCCcccccccccCCCCccCCCCCccccccchhhh
Q 037252 40 EEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKCE 93 (138)
Q Consensus 40 ~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~a 93 (138)
...|..|..----+ ..|. .|...||..|+. .-+...++--||.|--...
T Consensus 180 i~~C~iC~~iv~~g-~~C~--~C~~~~H~~C~~--~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 180 VKICNICHSLLIQG-QSCE--TCGIRMHLPCVA--KYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp CCBCTTTCSBCSSC-EECS--SSCCEECHHHHH--HHTTTCSSCBCTTTCCBCC
T ss_pred CCcCcchhhHHhCC-cccC--ccChHHHHHHHH--HHHHhCCCCCCCCCCCCCC
Confidence 56799998765422 5788 699999999997 3334567788999976543
No 79
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.24 E-value=1.2 Score=27.03 Aligned_cols=49 Identities=27% Similarity=0.435 Sum_probs=31.2
Q ss_pred CcccccccccccCCCc-----cEEecCCCCCcccccccccCCCCccCCCCCccccccchh
Q 037252 37 FLEEEPCIKCNRQRDE-----NLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYK 91 (138)
Q Consensus 37 ~~~~d~C~~C~~~G~e-----~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk 91 (138)
..++..|.+|...-.+ .++.-. .|--.||..|+..-+.. ...||+|...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~--~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~ 65 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVST--ECGHVFCSQCLRDSLKN----ANTCPTCRKK 65 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEEC--SSSCEEEHHHHHHHHHH----CSSCTTTCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeC--CCCChhcHHHHHHHHHc----CCCCCCCCCc
Confidence 4567889999875321 122223 56689999999743221 4579999754
No 80
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=71.23 E-value=2.1 Score=26.81 Aligned_cols=54 Identities=22% Similarity=0.397 Sum_probs=35.2
Q ss_pred CCcccccccccccCCCccEEecCCCCCcccccccccCCCCcc--CCCCCccccccchhhh
Q 037252 36 DFLEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKF--DDVGNFYCPYCWYKCE 93 (138)
Q Consensus 36 ~~~~~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~--dd~G~fyCP~C~yk~a 93 (138)
...++..|.+|...-.+.++ - .|--.||..|+..-... ...+...||.|.....
T Consensus 15 ~~~~~~~C~IC~~~~~~p~~--~--~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 15 MIKEEVTCPICLELLKEPVS--A--DCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp CCCTTTSCTTTCSCCSSCEE--C--TTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred hCccCCCCcCCChhhCccee--C--CCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 35567789999876543232 1 46688999998732221 2356899999986543
No 81
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=70.97 E-value=0.86 Score=28.78 Aligned_cols=48 Identities=27% Similarity=0.521 Sum_probs=30.0
Q ss_pred cccccccccccCCCc-cEEecCCCCCcccccccccCCCCccCCCCCccccccchh
Q 037252 38 LEEEPCIKCNRQRDE-NLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYK 91 (138)
Q Consensus 38 ~~~d~C~~C~~~G~e-~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk 91 (138)
.+++.|.+|-..-.+ ..+..- .|--.||..|+..-+.. +..||.|...
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l--~C~H~fh~~Ci~~w~~~----~~~CP~Cr~~ 69 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVL--PCNHEFHAKCVDKWLKA----NRTCPICRAD 69 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEE--TTTEEEETTHHHHHHHH----CSSCTTTCCC
T ss_pred CCCCCCeECCcccCCCCeEEEE--CCCCHhHHHHHHHHHHc----CCcCcCcCCc
Confidence 456789999854321 022222 36689999999843322 3479999754
No 82
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=70.53 E-value=1 Score=26.43 Aligned_cols=47 Identities=19% Similarity=0.373 Sum_probs=30.2
Q ss_pred ccccccccccCCC--ccEEecCCCCCcccccccccCCCCccCCCCCccccccchh
Q 037252 39 EEEPCIKCNRQRD--ENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYK 91 (138)
Q Consensus 39 ~~d~C~~C~~~G~--e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk 91 (138)
+++.|.+|...-. +....-- .|--.||..|+..-+... ..||.|...
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~--~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~ 52 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVL--PCGHLLHRTCYEEMLKEG----YRCPLCSGP 52 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEEC--TTSCEEETTHHHHHHHHT----CCCTTSCCS
T ss_pred CCCcCcccChhhcCCCcCeEec--CCCCcccHHHHHHHHHcC----CcCCCCCCc
Confidence 4678999977532 1133334 566899999997432221 679999754
No 83
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=70.27 E-value=1.4 Score=25.45 Aligned_cols=14 Identities=14% Similarity=0.415 Sum_probs=11.1
Q ss_pred CCCCccccccchhh
Q 037252 79 DVGNFYCPYCWYKC 92 (138)
Q Consensus 79 d~G~fyCP~C~yk~ 92 (138)
..|||.||.|.+..
T Consensus 3 ~~gDW~C~~C~~~N 16 (33)
T 2k1p_A 3 SANDWQCKTCSNVN 16 (33)
T ss_dssp SSSSCBCSSSCCBC
T ss_pred CCCCcccCCCCCcc
Confidence 36999999997654
No 84
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=70.12 E-value=6.3 Score=25.77 Aligned_cols=54 Identities=19% Similarity=0.448 Sum_probs=33.7
Q ss_pred cCCCcccccccccccCCCc-cEEecCCCCCcccccccccCCC---C------ccCCCCCccccccchh
Q 037252 34 DVDFLEEEPCIKCNRQRDE-NLLVCSQSGCPISVHENCLSCG---V------KFDDVGNFYCPYCWYK 91 (138)
Q Consensus 34 ~~~~~~~d~C~~C~~~G~e-~LL~Cd~~gCp~s~H~~Cl~~~---~------~~dd~G~fyCP~C~yk 91 (138)
+........|..|++.-.. .+|.-. -..||..|+... . -+...|..||..|..+
T Consensus 9 ~~~~~~~~~C~~C~~~I~~~~~v~a~----~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~ 72 (91)
T 2d8y_A 9 KFQAPARETCVECQKTVYPMERLLAN----QQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQ 72 (91)
T ss_dssp CSCSSSSCBCTTTCCBCCTTSEEECS----SSEEETTTCBCTTTCCBCCTTTCCCSSSCCCCHHHHHH
T ss_pred ccCCCCCCcCccCCCccCCceeEEEC----CCEECCCCCeeCCCCCCCCCCCcEeECCEEECHHHHHH
Confidence 3344457899999986631 244333 358998887752 1 2245678888777643
No 85
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=69.89 E-value=1.1 Score=25.67 Aligned_cols=13 Identities=15% Similarity=0.593 Sum_probs=10.6
Q ss_pred CCCccccccchhh
Q 037252 80 VGNFYCPYCWYKC 92 (138)
Q Consensus 80 ~G~fyCP~C~yk~ 92 (138)
.|||.||.|.+..
T Consensus 3 ~gDW~C~~C~~~N 15 (32)
T 2lk0_A 3 FEDWLCNKCCLNN 15 (32)
T ss_dssp CSEEECTTTCCEE
T ss_pred CCCCCcCcCcCCc
Confidence 5999999997654
No 86
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=69.75 E-value=2.8 Score=28.40 Aligned_cols=52 Identities=19% Similarity=0.447 Sum_probs=36.1
Q ss_pred CCcccccccccccCCCccEEecCCCCCcccccccccCCCCccCCCCCccccccchhhhh
Q 037252 36 DFLEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKCEL 94 (138)
Q Consensus 36 ~~~~~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~a~ 94 (138)
.+.++..|.+|...=.+-+.. .|--.|+..|+..- ...+...||.|......
T Consensus 11 ~~~~~~~C~iC~~~~~~p~~~----~CgH~fC~~Ci~~~---~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 11 PSLSECQCGICMEILVEPVTL----PCNHTLCKPCFQST---VEKASLCCPFCRRRVSS 62 (115)
T ss_dssp CCHHHHBCTTTCSBCSSCEEC----TTSCEECHHHHCCC---CCTTTSBCTTTCCBCHH
T ss_pred CCCCCCCCccCCcccCceeEc----CCCCHHhHHHHHHH---HhHCcCCCCCCCcccCc
Confidence 345577899998665432221 46688999999843 34567999999877654
No 87
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.06 E-value=1.9 Score=26.95 Aligned_cols=53 Identities=28% Similarity=0.469 Sum_probs=34.8
Q ss_pred CCcccccccccccCCCc-cEEecCCCCCcccccccccCCCCcc--CCCCCccccccchhhh
Q 037252 36 DFLEEEPCIKCNRQRDE-NLLVCSQSGCPISVHENCLSCGVKF--DDVGNFYCPYCWYKCE 93 (138)
Q Consensus 36 ~~~~~d~C~~C~~~G~e-~LL~Cd~~gCp~s~H~~Cl~~~~~~--dd~G~fyCP~C~yk~a 93 (138)
...++..|.+|...-.+ .+| .|--.||..|+..-... .+.+...||.|.....
T Consensus 15 ~~~~~~~C~IC~~~~~~p~~~-----~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 15 NVKEEVTCPICLELLTQPLSL-----DCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCCCCCCTTTCSCCSSCBCC-----SSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred HccCCCCCCCCCcccCCceeC-----CCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 35567789999887553 233 46678889998732221 1356889999976543
No 88
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.38 E-value=1.1 Score=29.27 Aligned_cols=49 Identities=33% Similarity=0.541 Sum_probs=30.3
Q ss_pred ccccccccccCCCc-------------cEEecCCCCCcccccccccCCCCccCCCCCccccccchhhh
Q 037252 39 EEEPCIKCNRQRDE-------------NLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKCE 93 (138)
Q Consensus 39 ~~d~C~~C~~~G~e-------------~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~a 93 (138)
+++.|.+|...-++ .++.-. .|--.||..|+..-+.. .-.||.|.....
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~--~C~H~FH~~Ci~~Wl~~----~~~CP~CR~~~~ 75 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWG--ECNHSFHNCCMSLWVKQ----NNRCPLCQQDWV 75 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEE--TTSCEEEHHHHHHHTTT----CCBCTTTCCBCC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeC--CCCCccChHHHHHHHHh----CCCCCCcCCCcc
Confidence 46778888775431 122222 47799999999843322 138999976543
No 89
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.13 E-value=5.2 Score=24.84 Aligned_cols=50 Identities=14% Similarity=0.182 Sum_probs=33.5
Q ss_pred CcccccccccccCCCccEEecCCCCCcccccccccCCCCccCCCCCccccccchhhhh
Q 037252 37 FLEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKCEL 94 (138)
Q Consensus 37 ~~~~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~a~ 94 (138)
..++..|.+|...-.+.++. .|--.||..|+..-+. ....||.|......
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~----~CgH~fC~~Ci~~~~~----~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPVSL----PCKHVFCYLCVKGASW----LGKRCALCRQEIPE 61 (71)
T ss_dssp SSSCCBCSSSSSBCSSEEEE----TTTEEEEHHHHHHCTT----CSSBCSSSCCBCCH
T ss_pred CCCCCCCccCCcccCCCEEc----cCCCHHHHHHHHHHHH----CCCcCcCcCchhCH
Confidence 45567899998765532222 3668899999874322 13789999876544
No 90
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.52 E-value=4 Score=23.88 Aligned_cols=46 Identities=22% Similarity=0.466 Sum_probs=30.5
Q ss_pred CcccccccccccCCCcc-EEecCCCCCcccccccccCCCCccCCCCCcccccc
Q 037252 37 FLEEEPCIKCNRQRDEN-LLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYC 88 (138)
Q Consensus 37 ~~~~d~C~~C~~~G~e~-LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C 88 (138)
..++..|.+|...=.+. +| .|--.||..|+..-... -.+...||.|
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~-----~CgH~fC~~Ci~~~~~~-~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKEPVII-----ECGHNFCKACITRWWED-LERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSSCCCC-----SSCCCCCHHHHHHHTTS-SCCSCCCSCC
T ss_pred cccCCCCccCCcccCccEeC-----CCCCccCHHHHHHHHHh-cCCCCCCCCC
Confidence 34567899998765432 33 46688999998743211 2467889988
No 91
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=64.01 E-value=9.5 Score=26.87 Aligned_cols=51 Identities=22% Similarity=0.475 Sum_probs=31.8
Q ss_pred CcccccccccccCCCcc-EEecCCCCCcccccccccCC---CCc--------cCCCCCccccccchh
Q 037252 37 FLEEEPCIKCNRQRDEN-LLVCSQSGCPISVHENCLSC---GVK--------FDDVGNFYCPYCWYK 91 (138)
Q Consensus 37 ~~~~d~C~~C~~~G~e~-LL~Cd~~gCp~s~H~~Cl~~---~~~--------~dd~G~fyCP~C~yk 91 (138)
..-...|..|++.=.+. +|.-. -..||..|+.+ ... +...|..||..|..+
T Consensus 58 ~~~~~~C~~C~~~I~~~~~v~a~----~~~wH~~CF~C~~C~~~L~~~g~~f~~~dg~~yC~~cy~~ 120 (123)
T 2l4z_A 58 GLSWKRCAGCGGKIADRFLLYAM----DSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIR 120 (123)
T ss_dssp CSSCSBBSSSSSBCCSSSEEEET----TEEEETTTSBCTTTCCBGGGTTCCCBCSSSCCBCHHHHHH
T ss_pred CccCCcCcCCCCCcCCcEEEEeC----CcEEcccccCcCcCCCcccccCCceEEECCEEeCHHHhhh
Confidence 44568999999854322 33333 25789888764 222 245678888888754
No 92
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=63.34 E-value=11 Score=24.33 Aligned_cols=55 Identities=18% Similarity=0.373 Sum_probs=34.6
Q ss_pred cCCCcccccccccccCCC-ccEEecCCCCCcccccccccCCC---Ccc--------CCCCCccccccchhh
Q 037252 34 DVDFLEEEPCIKCNRQRD-ENLLVCSQSGCPISVHENCLSCG---VKF--------DDVGNFYCPYCWYKC 92 (138)
Q Consensus 34 ~~~~~~~d~C~~C~~~G~-e~LL~Cd~~gCp~s~H~~Cl~~~---~~~--------dd~G~fyCP~C~yk~ 92 (138)
+..+.....|..|++.-. ..+|.-. -..||..|+... ..+ ...|..||..|..+.
T Consensus 9 ~~~~~~~~~C~~C~~~I~~~e~v~a~----~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~ 75 (82)
T 2co8_A 9 HQEAGAGDLCALCGEHLYVLERLCVN----GHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFYCLQHLPQT 75 (82)
T ss_dssp CCCCCSSCBCSSSCCBCCTTTBCCBT----TBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCEETTTCCCC
T ss_pred CcCCCCCCCCcccCCCcccceEEEEC----CCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEEChHHHHhh
Confidence 344556789999998542 1144333 258999888752 111 246889999887643
No 93
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.29 E-value=1.8 Score=27.02 Aligned_cols=48 Identities=25% Similarity=0.552 Sum_probs=30.5
Q ss_pred CcccccccccccCCC--ccEEecCCCCCcccccccccCCCCccCCCCCccccccchh
Q 037252 37 FLEEEPCIKCNRQRD--ENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYK 91 (138)
Q Consensus 37 ~~~~d~C~~C~~~G~--e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk 91 (138)
..+++.|.+|-..-. ..+... .|--.||..|+..-+.. ...||.|...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~---~C~H~f~~~Ci~~~~~~----~~~CP~Cr~~ 61 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGIC---PCKHAFHRKCLIKWLEV----RKVCPLCNMP 61 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEE---TTTEEEEHHHHHHHHHH----CSBCTTTCCB
T ss_pred CCCCCCCcCCCcccCCCCcEEEc---CCCCEecHHHHHHHHHc----CCcCCCcCcc
Confidence 345678999987632 123222 36688999999743322 2379999754
No 94
>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.26 E-value=3.4 Score=26.19 Aligned_cols=21 Identities=19% Similarity=0.431 Sum_probs=16.3
Q ss_pred CCccCCCCCccccccchhhhh
Q 037252 74 GVKFDDVGNFYCPYCWYKCEL 94 (138)
Q Consensus 74 ~~~~dd~G~fyCP~C~yk~a~ 94 (138)
+....+.+.|.||.|-|....
T Consensus 3 s~~~~~~~~W~C~~CT~~N~~ 23 (53)
T 2d9g_A 3 SGSSGDEGYWDCSVCTFRNSA 23 (53)
T ss_dssp CCCSSCCCCEECSSSCCEECS
T ss_pred CCCCCCCCCcCCCCCccCCCC
Confidence 345578899999999987644
No 95
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=61.24 E-value=11 Score=27.77 Aligned_cols=52 Identities=25% Similarity=0.483 Sum_probs=33.2
Q ss_pred CcccccccccccCCCcc-EEecCCCCCcccccccccCCC---C-----ccCCCCCccccccchhh
Q 037252 37 FLEEEPCIKCNRQRDEN-LLVCSQSGCPISVHENCLSCG---V-----KFDDVGNFYCPYCWYKC 92 (138)
Q Consensus 37 ~~~~d~C~~C~~~G~e~-LL~Cd~~gCp~s~H~~Cl~~~---~-----~~dd~G~fyCP~C~yk~ 92 (138)
......|..|++.=... +|.-. -..||..|+... . .|.-.|..||..|..+.
T Consensus 57 ~~~~~~C~~C~~~I~~~~~~~a~----~~~wH~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~ 117 (182)
T 2jtn_A 57 TPEIPMCAGCDQHILDRFILKAL----DRHWHSKCLKCSDCHVPLAERCFSRGESVYCKDDFFKR 117 (182)
T ss_dssp CCSCCBCBTSSSBCCCSEEEEET----TEEECSSTTSCTTTCCCCSSCCEEETTEEECHHHHHHT
T ss_pred CCCCCcCccCCCCccCceeEEec----CCeEccccCccCCCCCccCCCceeECCEeeecCccccc
Confidence 44568999999854422 44433 257888887642 1 23456888998887653
No 96
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=61.22 E-value=1.9 Score=27.96 Aligned_cols=54 Identities=19% Similarity=0.466 Sum_probs=35.4
Q ss_pred cCCCcccccccccccCCCccEEecCCCCCcccccccccCCCCccCCCCCccccccchhh
Q 037252 34 DVDFLEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKC 92 (138)
Q Consensus 34 ~~~~~~~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~ 92 (138)
.....++..|.+|...=.+-++. . .|--+|+..|+.. .+...+.+.||.|....
T Consensus 7 ~~~~~~~~~C~IC~~~~~~p~~~-~--~CgH~fC~~Ci~~--~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 7 DDPIPDELLCLICKDIMTDAVVI-P--CCGNSYCDECIRT--ALLESDEHTCPTCHQND 60 (92)
T ss_dssp CCCCCTTTEETTTTEECSSCEEC-T--TTCCEECHHHHHH--HHHHCTTCCCTTTCCSS
T ss_pred cccCCcCCCCCCCChhhcCceEC-C--CCCCHHHHHHHHH--HHHhcCCCcCcCCCCcC
Confidence 33455678899998654432322 1 2668899999873 33345678999998764
No 97
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=61.11 E-value=8.3 Score=22.97 Aligned_cols=41 Identities=27% Similarity=0.505 Sum_probs=28.4
Q ss_pred CCCCcCCCcccccccccccCCCccEEecCCCCCcccccccccCC
Q 037252 30 GDFTDVDFLEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSC 73 (138)
Q Consensus 30 ~~~~~~~~~~~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~ 73 (138)
+.|....+..-.+|-.|++--- .=+.|. .|-+.+|.+|...
T Consensus 4 H~F~~~~~~~pt~C~~C~~~l~-qG~~C~--~C~~~~H~~C~~~ 44 (52)
T 1faq_A 4 HNFARKTFLKLAFCDICQKFLL-NGFRCQ--TCGYKFHEHCSTK 44 (52)
T ss_dssp CCCEEECCSSCEECTTSSSEEC-SEEECT--TTTCCBCSTTSSS
T ss_pred ceeEeEeCCCCcCCCCcccccc-cCCEeC--CCCCeEChhHHhh
Confidence 3344444455577888865321 267999 9999999999985
No 98
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.52 E-value=8.4 Score=24.89 Aligned_cols=52 Identities=19% Similarity=0.420 Sum_probs=32.8
Q ss_pred CCCcccccccccccC---CCccEEecCCCCCcccccccccCC---CCc-----cCCCCCccccccchhh
Q 037252 35 VDFLEEEPCIKCNRQ---RDENLLVCSQSGCPISVHENCLSC---GVK-----FDDVGNFYCPYCWYKC 92 (138)
Q Consensus 35 ~~~~~~d~C~~C~~~---G~e~LL~Cd~~gCp~s~H~~Cl~~---~~~-----~dd~G~fyCP~C~yk~ 92 (138)
..+.....|..|++. ++ +|.-. -..||..|+.. ... +...|..||..|..+.
T Consensus 10 ~~~~~~~~C~~C~~~I~~~~--~v~a~----~~~wH~~CF~C~~C~~~L~~~~~~~~g~~yC~~~y~~~ 72 (80)
T 2dj7_A 10 IKIRGPSHCAGCKEEIKHGQ--SLLAL----DKQWHVSCFKCQTCSVILTGEYISKDGVPYCESDYHAQ 72 (80)
T ss_dssp CCCSSCSCCTTTCCCCSSSC--CEEET----TEEECTTTCBCSSSCCBCSSCCEEETTEEECTTHHHHH
T ss_pred cCCCCCCCCcCcCCeeCCCe--EEEEC----CcccccccCCcCcCCCCcCCCeEEECCEEECHHHHHHH
Confidence 335567899999984 43 44333 25788887764 112 2356788898887543
No 99
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.11 E-value=2.2 Score=26.16 Aligned_cols=49 Identities=16% Similarity=0.296 Sum_probs=33.3
Q ss_pred CcccccccccccCCCccEEecCCCCCcccccccccCCCCccCCCCCccccccchhh
Q 037252 37 FLEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKC 92 (138)
Q Consensus 37 ~~~~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~ 92 (138)
..++..|.+|...-.+.++ ..|--.||..|+..-+ ..+...||.|....
T Consensus 12 ~~~~~~C~IC~~~~~~p~~----~~CgH~fC~~Ci~~~~---~~~~~~CP~Cr~~~ 60 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCSPKQ----TECGHRFCESCMAALL---SSSSPKCTACQESI 60 (66)
T ss_dssp CCCCEECTTTCCEESSCCC----CSSSCCCCHHHHHHHH---TTSSCCCTTTCCCC
T ss_pred CCcCCCCCCCChHhcCeeE----CCCCCHHHHHHHHHHH---HhCcCCCCCCCcCC
Confidence 4456789999876543222 2567889999998432 25677899997654
No 100
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=59.35 E-value=1 Score=27.60 Aligned_cols=49 Identities=20% Similarity=0.405 Sum_probs=29.9
Q ss_pred ccccccccccC---CCccEEecCCCCCcccccccccCCCCccCCCCCccccccchhh
Q 037252 39 EEEPCIKCNRQ---RDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKC 92 (138)
Q Consensus 39 ~~d~C~~C~~~---G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~ 92 (138)
++..|.+|... .....+.=. .|--+||..|+..- -..+...||.|....
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~--~CgH~fC~~Ci~~~---~~~~~~~CP~Cr~~~ 53 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVN--VCGHTLCESCVDLL---FVRGAGNCPECGTPL 53 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEEC--TTCCCEEHHHHHHH---HHTTSSSCTTTCCCC
T ss_pred CCCcCCcCCCCccCCCccCeecC--CCCCHhHHHHHHHH---HHcCCCcCCCCCCcc
Confidence 56789999882 221100102 46688999998732 123567899997553
No 101
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=58.50 E-value=7.2 Score=24.19 Aligned_cols=52 Identities=27% Similarity=0.409 Sum_probs=34.6
Q ss_pred CcccccccccccCCCc-cEEecCCCCCcccccccccCCCCcc---CCCCCccccccchhhh
Q 037252 37 FLEEEPCIKCNRQRDE-NLLVCSQSGCPISVHENCLSCGVKF---DDVGNFYCPYCWYKCE 93 (138)
Q Consensus 37 ~~~~d~C~~C~~~G~e-~LL~Cd~~gCp~s~H~~Cl~~~~~~---dd~G~fyCP~C~yk~a 93 (138)
..++..|.+|...-.+ .+| .|--.||..|+..-... ...+...||.|.....
T Consensus 9 ~~~~~~C~IC~~~~~~p~~l-----~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 9 VQEEVTCPICLELLTEPLSL-----DCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp CCCCCEETTTTEECSSCCCC-----SSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred cccCCCCcCCCcccCCeeEC-----CCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence 3446789999876543 233 46688999999853332 2246889999986544
No 102
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=57.89 E-value=7.5 Score=23.38 Aligned_cols=42 Identities=24% Similarity=0.574 Sum_probs=27.6
Q ss_pred ccccccccccCCCc-cEEecCCCCCcccccccccCCCCccCCCCCccccccchhh
Q 037252 39 EEEPCIKCNRQRDE-NLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKC 92 (138)
Q Consensus 39 ~~d~C~~C~~~G~e-~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~ 92 (138)
++-.|.+|...=.+ .+|.| --+|+..|+.. ....||.|....
T Consensus 5 ~~~~C~IC~~~~~~p~~l~C-----gH~fC~~Ci~~-------~~~~CP~Cr~~~ 47 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKLLPC-----LHTLCSGCLEA-------SGMQCPICQAPW 47 (56)
T ss_dssp CCSSCSSSCSSCBCCSCSTT-----SCCSBTTTCSS-------SSSSCSSCCSSS
T ss_pred cCCCceEeCCccCCeEEcCC-----CCcccHHHHcc-------CCCCCCcCCcEe
Confidence 34568888765442 34444 46788888874 467899997543
No 103
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=57.53 E-value=4.3 Score=35.33 Aligned_cols=57 Identities=26% Similarity=0.392 Sum_probs=35.3
Q ss_pred cccccccccccC----CCccEEecCCCCCcccccccccCCCCccCCC-------CCccccccchhhhh
Q 037252 38 LEEEPCIKCNRQ----RDENLLVCSQSGCPISVHENCLSCGVKFDDV-------GNFYCPYCWYKCEL 94 (138)
Q Consensus 38 ~~~d~C~~C~~~----G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~-------G~fyCP~C~yk~a~ 94 (138)
..+..|-+|-.. |+=--..|....|-..||..|+..-+...+. ----||||..+..+
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 345679999642 3301246988899999999999621111111 11249999876543
No 104
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=57.50 E-value=3.8 Score=25.73 Aligned_cols=49 Identities=14% Similarity=0.076 Sum_probs=33.9
Q ss_pred cccccccccccCCCccEEecCCCCCcccccccccCCCCccCCCCCccccccchhhh
Q 037252 38 LEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKCE 93 (138)
Q Consensus 38 ~~~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~a 93 (138)
.++..|.+|..-=.+-++. .|-.+|+..|+..- ...|...||.|.....
T Consensus 6 ~~~~~C~IC~~~~~~Pv~~----~CgH~fc~~Ci~~~---~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 6 PEYFRCPISLELMKDPVIV----STGQTYERSSIQKW---LDAGHKTCPKSQETLL 54 (78)
T ss_dssp SSSSSCTTTSCCCSSEEEE----TTTEEEEHHHHHHH---HTTTCCBCTTTCCBCS
T ss_pred cccCCCCCccccccCCEEc----CCCCeecHHHHHHH---HHHCcCCCCCCcCCCC
Confidence 4467899998765432332 46789999999732 3356889999986543
No 105
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=57.22 E-value=2.6 Score=27.81 Aligned_cols=48 Identities=23% Similarity=0.389 Sum_probs=30.4
Q ss_pred CcccccccccccC---CCccEEecCCCCCcccccccccCCCCccCCCCCccccccchhh
Q 037252 37 FLEEEPCIKCNRQ---RDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKC 92 (138)
Q Consensus 37 ~~~~d~C~~C~~~---G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~ 92 (138)
..++..|.+|-.. |+ .+.-- .|--.||..|+..-+. ....||.|....
T Consensus 37 ~~~~~~C~IC~~~~~~~~--~~~~l--~C~H~Fh~~Ci~~wl~----~~~~CP~Cr~~~ 87 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGD--VATEL--PCHHYFHKPCVSIWLQ----KSGTCPVCRCMF 87 (91)
T ss_dssp SSSCSEETTTTEECCTTC--EEEEE--TTTEEEEHHHHHHHHT----TTCBCTTTCCBS
T ss_pred cCCCCCCcccChhhcCCC--cEEec--CCCChHHHHHHHHHHH----cCCcCcCcCccC
Confidence 3456789999644 33 22222 3668999999984322 234899997543
No 106
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=56.88 E-value=8.4 Score=25.02 Aligned_cols=52 Identities=17% Similarity=0.299 Sum_probs=33.0
Q ss_pred CcccccccccccCCCccEEecCCCCCcccccccccCC---CCcc------CCCCCccccccchhh
Q 037252 37 FLEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSC---GVKF------DDVGNFYCPYCWYKC 92 (138)
Q Consensus 37 ~~~~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~---~~~~------dd~G~fyCP~C~yk~ 92 (138)
......|..|++.-....+.-. + ..||..|+.. ...+ ...|..||..|..+.
T Consensus 22 ~~~~~~C~~C~~~I~~~~~~a~--~--~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~~ 82 (89)
T 1x64_A 22 AQRMPLCDKCGSGIVGAVVKAR--D--KYRHPECFVCADCNLNLKQKGYFFVEGELYCETHARAR 82 (89)
T ss_dssp CCSCCBCTTTCCBCCSCCEESS--S--CEECTTTCCCSSSCCCTTTSCCEEETTEEECHHHHHHH
T ss_pred CCcCCCcccCCCEecccEEEEC--C--ceECccCCEecCCCCCCCCCCeEeECCEEECHHHHHHH
Confidence 3446789999986543344433 2 6899888774 2222 345788898887543
No 107
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=56.33 E-value=1.8 Score=30.29 Aligned_cols=28 Identities=25% Similarity=0.371 Sum_probs=20.4
Q ss_pred CCcccccccccCCCCccCCCCCccccccchhh
Q 037252 61 GCPISVHENCLSCGVKFDDVGNFYCPYCWYKC 92 (138)
Q Consensus 61 gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~ 92 (138)
.|--.||..|+..=+. .+..||.|....
T Consensus 72 ~C~H~FH~~Ci~~Wl~----~~~~CP~Cr~~~ 99 (106)
T 3dpl_R 72 VCNHAFHFHCISRWLK----TRQVCPLDNREW 99 (106)
T ss_dssp TTSCEEEHHHHHHHHT----TCSBCSSSCSBC
T ss_pred ccCcEECHHHHHHHHH----cCCcCcCCCCcc
Confidence 4678999999984332 256899998653
No 108
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.60 E-value=3.5 Score=26.17 Aligned_cols=52 Identities=23% Similarity=0.465 Sum_probs=34.2
Q ss_pred CCcccccccccccCCCc-----cEEecCCCCCcccccccccCCCCccCCCCCccccccchhhh
Q 037252 36 DFLEEEPCIKCNRQRDE-----NLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKCE 93 (138)
Q Consensus 36 ~~~~~d~C~~C~~~G~e-----~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~a 93 (138)
...+...|.+|...-.+ .+| .|--.||..|+..-+.. ..+...||+|.....
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~~~~-----~CgH~fC~~Ci~~~~~~-~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 11 ALREVLECPICMESFTEEQLRPKLL-----HCGHTICRQCLEKLLAS-SINGVRCPFCSKITR 67 (88)
T ss_dssp CCCSCCBCTTTCCBCCTTSSCEEEC-----SSSCEEEHHHHHHHHHH-CSSCBCCTTTCCCBC
T ss_pred hccCCCCCccCCccccccCCCeEEC-----CCCChhhHHHHHHHHHc-CCCCcCCCCCCCccc
Confidence 34556789999876542 133 46689999999743221 135789999986543
No 109
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=55.15 E-value=1.7 Score=31.54 Aligned_cols=50 Identities=22% Similarity=0.440 Sum_probs=34.6
Q ss_pred CcccccccccccCCCccEEecCCCCCcccccccccCCCCccCCCCCccccccchhh
Q 037252 37 FLEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKC 92 (138)
Q Consensus 37 ~~~~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~ 92 (138)
..+...|.+|...-.+- +... .|--.||..|+..-+ ..+...||.|....
T Consensus 51 ~~~~~~C~IC~~~~~~p-~~~~--~CgH~fC~~Ci~~~~---~~~~~~CP~Cr~~~ 100 (165)
T 2ckl_B 51 LHSELMCPICLDMLKNT-MTTK--ECLHRFCADCIITAL---RSGNKECPTCRKKL 100 (165)
T ss_dssp CHHHHBCTTTSSBCSSE-EEET--TTCCEEEHHHHHHHH---HTTCCBCTTTCCBC
T ss_pred CCCCCCCcccChHhhCc-CEeC--CCCChhHHHHHHHHH---HhCcCCCCCCCCcC
Confidence 34566899998776532 2333 577899999997432 24578899998654
No 110
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=53.71 E-value=6.8 Score=23.10 Aligned_cols=31 Identities=26% Similarity=0.625 Sum_probs=24.0
Q ss_pred ccccccccccC-----CCccEEecCCCCCcccccccccCC
Q 037252 39 EEEPCIKCNRQ-----RDENLLVCSQSGCPISVHENCLSC 73 (138)
Q Consensus 39 ~~d~C~~C~~~-----G~e~LL~Cd~~gCp~s~H~~Cl~~ 73 (138)
.-..|-.|++- -| =+.|. .|-+.+|.+|...
T Consensus 10 ~pt~C~~C~~~l~g~~~q--g~~C~--~C~~~~H~~C~~~ 45 (50)
T 1ptq_A 10 SPTFCDHCGSLLWGLVKQ--GLKCE--DCGMNVHHKCREK 45 (50)
T ss_dssp SCCBCTTTCCBCCSSSSC--EEEET--TTCCEECHHHHTT
T ss_pred CCCCcCCCCceeeccCCc--cCEeC--CCCCeECHHHhhh
Confidence 34678888652 24 68899 9999999999874
No 111
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.83 E-value=7.5 Score=24.69 Aligned_cols=42 Identities=26% Similarity=0.540 Sum_probs=24.8
Q ss_pred cccccccccccCCCc-cEEecCCCCCcccccc-cccCCCCccCCCCCccccccchhh
Q 037252 38 LEEEPCIKCNRQRDE-NLLVCSQSGCPISVHE-NCLSCGVKFDDVGNFYCPYCWYKC 92 (138)
Q Consensus 38 ~~~d~C~~C~~~G~e-~LL~Cd~~gCp~s~H~-~Cl~~~~~~dd~G~fyCP~C~yk~ 92 (138)
.++..|.+|-..-.+ -||.|. |. -|...... .+.||+|....
T Consensus 13 ~~~~~C~IC~~~~~~~v~~pCg--------H~~~C~~C~~~-----~~~CP~CR~~i 56 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLLPCR--------HTCLCDGCVKY-----FQQCPMCRQFV 56 (68)
T ss_dssp CCSSCCSSSSSSCCCCEETTTT--------BCCSCTTHHHH-----CSSCTTTCCCC
T ss_pred CCCCCCCCcCcCCCCEEEECCC--------ChhhhHHHHhc-----CCCCCCCCcch
Confidence 346789999776543 345676 44 33332111 37899997543
No 112
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=50.09 E-value=7.5 Score=24.48 Aligned_cols=40 Identities=23% Similarity=0.550 Sum_probs=29.4
Q ss_pred CCCCcCCCcccccccccccC--C---CccEEecCCCCCcccccccccCC
Q 037252 30 GDFTDVDFLEEEPCIKCNRQ--R---DENLLVCSQSGCPISVHENCLSC 73 (138)
Q Consensus 30 ~~~~~~~~~~~d~C~~C~~~--G---~e~LL~Cd~~gCp~s~H~~Cl~~ 73 (138)
+.|....+..-..|-.|++- | | -+.|. .|-+.+|.+|...
T Consensus 10 H~F~~~~~~~pt~C~~C~~~l~Gl~~q--g~~C~--~C~~~~Hk~C~~~ 54 (65)
T 3uej_A 10 HRFKVYNYMSPTFCDHCGSLLWGLVKQ--GLKCE--DCGMNVHHKCREK 54 (65)
T ss_dssp CCEEEECCSSCCBCTTTCCBCCSSSSC--EEEET--TTCCEECHHHHTT
T ss_pred ceEEeEeCCCCCcccccChhhhccCce--eeECC--CCCCeEchhHhhh
Confidence 33444444456788899763 3 5 78999 9999999999874
No 113
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=49.24 E-value=16 Score=22.94 Aligned_cols=40 Identities=23% Similarity=0.536 Sum_probs=29.4
Q ss_pred CCCCcCCCcccccccccccC--C---CccEEecCCCCCcccccccccCC
Q 037252 30 GDFTDVDFLEEEPCIKCNRQ--R---DENLLVCSQSGCPISVHENCLSC 73 (138)
Q Consensus 30 ~~~~~~~~~~~d~C~~C~~~--G---~e~LL~Cd~~gCp~s~H~~Cl~~ 73 (138)
+.|....+..-.+|-.|++- | | =+.|. .|-+.+|.+|...
T Consensus 13 H~F~~~~~~~pt~C~~C~~~l~Gl~~q--g~~C~--~C~~~~Hk~C~~~ 57 (65)
T 2enz_A 13 HRFKVYNYKSPTFCEHCGTLLWGLARQ--GLKCD--ACGMNVHHRCQTK 57 (65)
T ss_dssp CCEEECCCCSCCBCSSSCCBCCCSSSC--SEEES--SSCCEECTTTTTT
T ss_pred CccEeEcCCCCcCchhcChhheecCCc--ccccC--CCCCccCHhHHhh
Confidence 44444445556789999762 2 4 67899 9999999999984
No 114
>2db6_A SH3 and cysteine rich domain 3; STAC3, C1 domain, cystein-rich domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.02 E-value=7 Score=25.50 Aligned_cols=40 Identities=33% Similarity=0.566 Sum_probs=29.7
Q ss_pred CCCCcCCCcccccccccccC--C---CccEEecCCCCCcccccccccCC
Q 037252 30 GDFTDVDFLEEEPCIKCNRQ--R---DENLLVCSQSGCPISVHENCLSC 73 (138)
Q Consensus 30 ~~~~~~~~~~~d~C~~C~~~--G---~e~LL~Cd~~gCp~s~H~~Cl~~ 73 (138)
+.|....+..-.+|-.|++- | | =+.|. .|-+.+|.+|...
T Consensus 18 H~F~~~~f~~pt~C~~C~~~lwGl~kq--G~~C~--~C~~~~Hk~C~~~ 62 (74)
T 2db6_A 18 HKFKDHFFKKPKFCDVCARMIVLNNKF--GLRCK--NCKTNIHEHCQSY 62 (74)
T ss_dssp CCEEEEECSSCEECSSSCCEECHHHHE--EEEES--SSCCEECTTTTGG
T ss_pred CceEEeeCCCCcCchhcChhhccccCC--ccccC--CCCCccChhHHhh
Confidence 44444445556789999752 2 4 68999 9999999999884
No 115
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=48.41 E-value=6 Score=25.43 Aligned_cols=43 Identities=23% Similarity=0.607 Sum_probs=30.6
Q ss_pred CCCCCcCCCcccccccccccCCC--ccEEecCCCCCcccccccccCC
Q 037252 29 SGDFTDVDFLEEEPCIKCNRQRD--ENLLVCSQSGCPISVHENCLSC 73 (138)
Q Consensus 29 ~~~~~~~~~~~~d~C~~C~~~G~--e~LL~Cd~~gCp~s~H~~Cl~~ 73 (138)
.|+|...-...-..|..|++.=. ..-+.|. .|.+..|.+|-..
T Consensus 8 ~H~F~~kt~~~~~~C~~Cg~~i~~gkq~~kC~--dC~~~cH~~C~~~ 52 (61)
T 4b6d_A 8 LHDFVSKTVIKPESCVPCGKRIKFGKLSLKCR--DCRVVSHPECRDR 52 (61)
T ss_dssp CCCEEEEECCSCEECTTTCCEECTTCEEEEES--SSSCEECGGGGGG
T ss_pred ceeEEeeeccCCcccccccCEEEEeeEeeECC--CCCCeEchhHhhc
Confidence 35555555566789999955321 1269999 9999999999763
No 116
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=48.39 E-value=7.6 Score=25.52 Aligned_cols=51 Identities=20% Similarity=0.424 Sum_probs=32.4
Q ss_pred CcccccccccccCCC---ccEEecCCCCCcccccccccCCCCccCCCCCccccccchhhh
Q 037252 37 FLEEEPCIKCNRQRD---ENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKCE 93 (138)
Q Consensus 37 ~~~~d~C~~C~~~G~---e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~a 93 (138)
..++..|.+|-..-. -.++.| .|-.+|+..|+. .+-..+++.||.|.....
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~---~CGH~fC~~Cl~---~~~~~~~~~CP~CR~~~~ 61 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPC---TCGYQICRFCWH---RIRTDENGLCPACRKPYP 61 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSS---TTSCCCCHHHHH---HHTTSSCSBCTTTCCBCS
T ss_pred cccCCcCCccCccCcccccccccc---CCCCCcCHHHHH---HHHhcCCCCCCCCCCccC
Confidence 345668999987442 023332 266788888876 333347899999975543
No 117
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.07 E-value=11 Score=24.45 Aligned_cols=50 Identities=26% Similarity=0.572 Sum_probs=32.3
Q ss_pred ccccccccccCCCccEEecCCCCCcccccccccCCC---Cc------cCCCCCccccccchhh
Q 037252 39 EEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCG---VK------FDDVGNFYCPYCWYKC 92 (138)
Q Consensus 39 ~~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~---~~------~dd~G~fyCP~C~yk~ 92 (138)
....|..|++.=....+.-. -..||..|+... .. +...|..||..|..+.
T Consensus 24 ~~~~C~~C~~~I~~~~v~a~----~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~ 82 (90)
T 2dar_A 24 RTPMCAHCNQVIRGPFLVAL----GKSWHPEEFNCAHCKNTMAYIGFVEEKGALYCELCYEKF 82 (90)
T ss_dssp CCCBBSSSCCBCCSCEEEET----TEEECTTTCBCSSSCCBCSSSCBEESSSCEECHHHHHHH
T ss_pred CCCCCccCCCEecceEEEEC----CccccccCCccCCCCCCCCCCEeEeECCEEECHHHHHHH
Confidence 35689999986543355444 268998888641 11 2356888998887543
No 118
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=47.93 E-value=2.9 Score=25.53 Aligned_cols=50 Identities=26% Similarity=0.442 Sum_probs=31.4
Q ss_pred CcccccccccccCCCc-----cEEecCCCCCcccccccccCCCCccCCCCCccccccchhh
Q 037252 37 FLEEEPCIKCNRQRDE-----NLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKC 92 (138)
Q Consensus 37 ~~~~d~C~~C~~~G~e-----~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~ 92 (138)
..++..|.+|...-.+ ..+.-- .|--.||..|+..-+. ....||.|....
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~--~CgH~fc~~Ci~~~~~----~~~~CP~Cr~~~ 61 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVST--ECGHVFCSQCLRDSLK----NANTCPTCRKKI 61 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEEC--TTSCEEEHHHHHHHHH----HCSBCTTTCCBC
T ss_pred CCCCCCCcccChhhhccccccCCeEeC--CCCChHhHHHHHHHHH----cCCCCCCCCCcc
Confidence 3456789999865321 133333 5668999999974222 124899997654
No 119
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.15 E-value=5.9 Score=24.62 Aligned_cols=49 Identities=14% Similarity=0.299 Sum_probs=32.0
Q ss_pred CcccccccccccCCCccEEecCCCCCcccccccccCCCCccCCCCCccccccchhh
Q 037252 37 FLEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKC 92 (138)
Q Consensus 37 ~~~~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~ 92 (138)
..++..|.+|...=.+-+. -. .|--.||..|+..-+.. ...||.|....
T Consensus 12 ~~~~~~C~IC~~~~~~p~~-~~--~CgH~fC~~Ci~~~~~~----~~~CP~Cr~~~ 60 (72)
T 2djb_A 12 LTPYILCSICKGYLIDATT-IT--ECLHTFCKSCIVRHFYY----SNRCPKCNIVV 60 (72)
T ss_dssp CCGGGSCTTTSSCCSSCEE-CS--SSCCEECHHHHHHHHHH----CSSCTTTCCCC
T ss_pred cCCCCCCCCCChHHHCcCE-EC--CCCCHHHHHHHHHHHHc----CCcCCCcCccc
Confidence 4557789999876543222 12 46688999999743321 46899997543
No 120
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=46.55 E-value=6.5 Score=26.82 Aligned_cols=33 Identities=21% Similarity=0.478 Sum_probs=28.1
Q ss_pred cccccccccCCCccEEecCCCCCcccccccccCCC
Q 037252 40 EEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCG 74 (138)
Q Consensus 40 ~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~ 74 (138)
...|..|+..+..-.-.|+ .|-+.+|..|+-.+
T Consensus 47 ~~~C~~C~~~~~~~~Y~C~--~C~f~lH~~Ca~~p 79 (89)
T 1v5n_A 47 VYTCDKCEEEGTIWSYHCD--ECDFDLHAKCALNE 79 (89)
T ss_dssp SCCCTTTSCCCCSCEEECT--TTCCCCCHHHHHCS
T ss_pred CeEeCCCCCcCCCcEEEcC--CCCCeEcHHhcCCC
Confidence 3579999998876678999 99999999999754
No 121
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=46.03 E-value=8.4 Score=24.44 Aligned_cols=50 Identities=24% Similarity=0.459 Sum_probs=31.1
Q ss_pred cccccccccCCC-ccEEecCCCCCcccccccccCCC---Cc------cCCCCCccccccchhhh
Q 037252 40 EEPCIKCNRQRD-ENLLVCSQSGCPISVHENCLSCG---VK------FDDVGNFYCPYCWYKCE 93 (138)
Q Consensus 40 ~d~C~~C~~~G~-e~LL~Cd~~gCp~s~H~~Cl~~~---~~------~dd~G~fyCP~C~yk~a 93 (138)
.+.|..|++.-. ..++.-. -..||..|+... .+ +...|..||..|..+.-
T Consensus 7 ~~~C~~C~~~I~~~~~~~a~----~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 66 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQCD----GRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKY 66 (81)
T ss_dssp -CBCSSSCCBCSSTTEEEET----TEEEESSSEECSSSCCEECSSCCEEETTEEECSHHHHHHC
T ss_pred CCcCcCcCccccCceeEEeC----CcccccccCccCCCCCCCCCCCeEeeCCEEECHHHHHHHh
Confidence 578999998442 1255444 258898887642 11 23467889998886543
No 122
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=46.00 E-value=1.3 Score=26.44 Aligned_cols=49 Identities=27% Similarity=0.466 Sum_probs=29.5
Q ss_pred ccccccccccCCCc-----cEEecCCCCCcccccccccCCCCccCCCCCccccccchhhh
Q 037252 39 EEEPCIKCNRQRDE-----NLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKCE 93 (138)
Q Consensus 39 ~~d~C~~C~~~G~e-----~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~a 93 (138)
++..|.+|...-.+ ..+.-. .|--.||..|+..-+.. ...||.|.....
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~--~CgH~fc~~Ci~~~~~~----~~~CP~Cr~~~~ 55 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVST--ECGHVFCSQCLRDSLKN----ANTCPTCRKKIN 55 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEE--TTSCEEEHHHHHHHHHH----CSBCTTTCCBCT
T ss_pred CCCCCCccChhhhCccccCCCEEeC--CCCCchhHHHHHHHHHc----CCCCCCCCccCC
Confidence 35678888765321 122222 45688999999743221 458999975543
No 123
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.25 E-value=7 Score=24.76 Aligned_cols=48 Identities=15% Similarity=0.234 Sum_probs=32.4
Q ss_pred CcccccccccccCCCccEEecCCCCCcccccccccCCCCccCCCCCccccccchhh
Q 037252 37 FLEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKC 92 (138)
Q Consensus 37 ~~~~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~ 92 (138)
..+...|.+|...=.+-++ - .|--.||..|+..-+. ....||.|....
T Consensus 12 ~~~~~~C~IC~~~~~~p~~--~--~CgH~fC~~Ci~~~~~----~~~~CP~Cr~~~ 59 (81)
T 2csy_A 12 EEIPFRCFICRQAFQNPVV--T--KCRHYFCESCALEHFR----ATPRCYICDQPT 59 (81)
T ss_dssp CCCCSBCSSSCSBCCSEEE--C--TTSCEEEHHHHHHHHH----HCSBCSSSCCBC
T ss_pred CCCCCCCcCCCchhcCeeE--c--cCCCHhHHHHHHHHHH----CCCcCCCcCccc
Confidence 3445689999876553332 2 5778999999974332 256899998664
No 124
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=44.43 E-value=2.9 Score=25.52 Aligned_cols=46 Identities=20% Similarity=0.383 Sum_probs=29.8
Q ss_pred ccccccccccCCCccEEecCCCCCcccccccccCCCCccCCCCCccccccchh
Q 037252 39 EEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYK 91 (138)
Q Consensus 39 ~~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk 91 (138)
+++.|.+|...-.+.. .-- .|--.||..|+..-+. ....||.|...
T Consensus 4 ~~~~C~IC~~~~~~~~-~~~--~C~H~fc~~Ci~~~~~----~~~~CP~Cr~~ 49 (68)
T 1chc_A 4 VAERCPICLEDPSNYS-MAL--PCLHAFCYVCITRWIR----QNPTCPLCKVP 49 (68)
T ss_dssp CCCCCSSCCSCCCSCE-EET--TTTEEESTTHHHHHHH----HSCSTTTTCCC
T ss_pred CCCCCeeCCccccCCc-Eec--CCCCeeHHHHHHHHHh----CcCcCcCCChh
Confidence 3578999988765311 222 4668899999974221 23589999754
No 125
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=43.45 E-value=7.3 Score=23.85 Aligned_cols=14 Identities=29% Similarity=0.662 Sum_probs=11.0
Q ss_pred CCCCCcccc--ccchh
Q 037252 78 DDVGNFYCP--YCWYK 91 (138)
Q Consensus 78 dd~G~fyCP--~C~yk 91 (138)
...|||.|| .|.+.
T Consensus 10 ~~~GDW~C~~~~C~~~ 25 (45)
T 1n0z_A 10 VSDGDWICPDKKCGNV 25 (45)
T ss_dssp SCSSSCBCSSTTTCCB
T ss_pred CCCCCcCCCCCCCCCE
Confidence 358999999 78754
No 126
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=43.10 E-value=14 Score=24.21 Aligned_cols=40 Identities=23% Similarity=0.599 Sum_probs=29.7
Q ss_pred CCCCcCCCccccccccccc-----CCCccEEecCCCCCcccccccccCC
Q 037252 30 GDFTDVDFLEEEPCIKCNR-----QRDENLLVCSQSGCPISVHENCLSC 73 (138)
Q Consensus 30 ~~~~~~~~~~~d~C~~C~~-----~G~e~LL~Cd~~gCp~s~H~~Cl~~ 73 (138)
+.|....+..-.+|-.|.+ .-| =+.|. .|-+.+|.+|...
T Consensus 24 H~F~~~~f~~pt~C~~C~~~lwGl~kq--G~~C~--~C~~~~Hk~C~~~ 68 (77)
T 2enn_A 24 HEFTATFFPQPTFCSVCHEFVWGLNKQ--GYQCR--QCNAAIHKKCIDK 68 (77)
T ss_dssp CEEEEECCSSCEECSSSCCEECCTTCC--EEECS--SSCCEEESGGGSS
T ss_pred CccEEEcCCCCcCccccChhhcccccc--ccCcC--CCCCcCCHhHHhh
Confidence 4444444555678999976 224 67899 9999999999985
No 127
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.06 E-value=14 Score=22.51 Aligned_cols=49 Identities=22% Similarity=0.591 Sum_probs=29.7
Q ss_pred ccccccccccCCCccEEecCCCCCcccccccccCC---CCc------cCCCCCccccccchh
Q 037252 39 EEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSC---GVK------FDDVGNFYCPYCWYK 91 (138)
Q Consensus 39 ~~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~---~~~------~dd~G~fyCP~C~yk 91 (138)
....|..|++.-....+.=. -..||..|+.. ..+ +...|..||..|..+
T Consensus 4 ~~~~C~~C~~~I~~~~~~a~----~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~ 61 (69)
T 2cur_A 4 GSSGCVKCNKAITSGGITYQ----DQPWHADCFVCVTCSKKLAGQRFTAVEDQYYCVDCYKN 61 (69)
T ss_dssp CCCCCSSSCCCCCTTCEEET----TEEECTTTTBCTTTCCBCTTSCEEECSSCEEEHHHHHH
T ss_pred CcCCCcccCCEeCcceEEEC----ccccccCcCEECCCCCCCCCCccEeECCEEECHHHhHH
Confidence 35688889875442233333 25788888764 111 235678899888754
No 128
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.89 E-value=18 Score=23.83 Aligned_cols=40 Identities=20% Similarity=0.517 Sum_probs=29.1
Q ss_pred CCCCcCCCcccccccccccC-----CCccEEecCCCCCcccccccccCC
Q 037252 30 GDFTDVDFLEEEPCIKCNRQ-----RDENLLVCSQSGCPISVHENCLSC 73 (138)
Q Consensus 30 ~~~~~~~~~~~d~C~~C~~~-----G~e~LL~Cd~~gCp~s~H~~Cl~~ 73 (138)
|.|...-+..-.+|-.|++- -| =+.|. .|-+.+|.+|...
T Consensus 18 H~F~~~~~~~pt~C~~C~~~lwGl~kq--g~~C~--~C~~~~Hk~C~~~ 62 (83)
T 2yuu_A 18 HEFIATFFGQPTFCSVCKDFVWGLNKQ--GYKCR--QCNAAIHKKCIDK 62 (83)
T ss_dssp CCEEEECCSSCCCCSSSCCCCCSSSCC--EEEET--TTCCEECTTGGGT
T ss_pred CceEeEeCCCCcChhhcChhhcccccc--ccccC--CcCCeeChhhhhh
Confidence 33444444556789999763 24 67899 9999999999884
No 129
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.75 E-value=25 Score=23.33 Aligned_cols=40 Identities=20% Similarity=0.484 Sum_probs=29.5
Q ss_pred CCCCcCCCcccccccccccC--C---CccEEecCCCCCcccccccccCC
Q 037252 30 GDFTDVDFLEEEPCIKCNRQ--R---DENLLVCSQSGCPISVHENCLSC 73 (138)
Q Consensus 30 ~~~~~~~~~~~d~C~~C~~~--G---~e~LL~Cd~~gCp~s~H~~Cl~~ 73 (138)
+.|....+.--.+|-.|++- | | =+.|. .|-+.+|.+|...
T Consensus 18 H~F~~~~~~~pt~C~~C~~~l~Gl~kq--G~~C~--~C~~~~Hk~C~~~ 62 (85)
T 2eli_A 18 HKFKIHTYGSPTFCDHCGSLLYGLIHQ--GMKCD--TCDMNVHKQCVIN 62 (85)
T ss_dssp CCCEEECCSSCCBCSSSCCBCCCSSSC--EEECS--SSCCEEETTTTTT
T ss_pred cccEeeeCCCCcCCcccCccccccccC--CCcCC--CcCCccCHhHHhh
Confidence 44444445556789999762 3 5 68899 9999999999984
No 130
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=42.72 E-value=4.8 Score=23.73 Aligned_cols=16 Identities=19% Similarity=0.557 Sum_probs=12.0
Q ss_pred CCCCccccccchhhhh
Q 037252 79 DVGNFYCPYCWYKCEL 94 (138)
Q Consensus 79 d~G~fyCP~C~yk~a~ 94 (138)
+.|.|-|+.|.+....
T Consensus 4 ~~G~W~C~~C~v~N~~ 19 (34)
T 3gj5_B 4 GSGSWDCEVCLVQNKA 19 (34)
T ss_dssp --CCEECTTTCCEECS
T ss_pred CCCceECCeeEeECcc
Confidence 7899999999987654
No 131
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=41.12 E-value=6.5 Score=28.21 Aligned_cols=59 Identities=22% Similarity=0.474 Sum_probs=42.2
Q ss_pred CCCCCCcCCCcccccccccccC------CCccEEecCCCCCcccccccccCCCCccCCCCCccccccchhh
Q 037252 28 RSGDFTDVDFLEEEPCIKCNRQ------RDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKC 92 (138)
Q Consensus 28 ~~~~~~~~~~~~~d~C~~C~~~------G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~ 92 (138)
.++...+....+.-+|.+|+++ |+ -.+-|. .|-..+=..|.... ..+|+-.||.|.-+.
T Consensus 4 g~~~~kp~~~~~~qiCqiCGD~VG~~~~Ge-~FVAC~--eC~FPvCrpCyEYE---rkeG~q~CpqCktrY 68 (93)
T 1weo_A 4 GSSGPKPLKNLDGQFCEICGDQIGLTVEGD-LFVACN--ECGFPACRPCYEYE---RREGTQNCPQCKTRY 68 (93)
T ss_dssp SSSSSSCCSCCSSCBCSSSCCBCCBCSSSS-BCCSCS--SSCCCCCHHHHHHH---HHTSCSSCTTTCCCC
T ss_pred CCCCCCcccccCCCccccccCccccCCCCC-EEEeee--ccCChhhHHHHHHH---HhccCccccccCCcc
Confidence 3444445555567899999987 43 456788 88888888887632 468999999997443
No 132
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.44 E-value=22 Score=22.18 Aligned_cols=49 Identities=29% Similarity=0.525 Sum_probs=30.0
Q ss_pred cccccccccCCCccEEecCCCCCcccccccccCC---------CCccCCCCCccccccchhh
Q 037252 40 EEPCIKCNRQRDENLLVCSQSGCPISVHENCLSC---------GVKFDDVGNFYCPYCWYKC 92 (138)
Q Consensus 40 ~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~---------~~~~dd~G~fyCP~C~yk~ 92 (138)
...|..|++.-....|.-. -..||..|+.. ..-+...|..||..|..+.
T Consensus 15 ~~~C~~C~~~I~~~~v~a~----~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~~y~~~ 72 (80)
T 1x3h_A 15 SPKCGGCNRPVLENYLSAM----DTVWHPECFVCGDCFTSFSTGSFFELDGRPFCELHYHHR 72 (80)
T ss_dssp SCBCTTTCCBCCSSCEEET----TEEECTTTCBCSSSCCBSCSSCCEESSSCEECHHHHHHH
T ss_pred CCccccCCCeecceeEEEC----CCeEecCcCChhhCCCCCCCCcEEeECCEEECHHHHHHH
Confidence 3578888875443344333 35789888552 1122356788998887554
No 133
>3gj3_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1 PDB: 2gqe_A
Probab=39.42 E-value=6.6 Score=22.88 Aligned_cols=16 Identities=19% Similarity=0.505 Sum_probs=12.1
Q ss_pred CCCCccccccchhhhh
Q 037252 79 DVGNFYCPYCWYKCEL 94 (138)
Q Consensus 79 d~G~fyCP~C~yk~a~ 94 (138)
..|.|-|+.|.+....
T Consensus 4 ~~g~W~C~~C~~~N~~ 19 (33)
T 3gj3_B 4 GSGTWDCDTCLVQNKP 19 (33)
T ss_dssp --CCEECTTTCCEECT
T ss_pred CCCceeCCcccCCCcc
Confidence 6799999999987654
No 134
>3gj8_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.82A {Rattus norvegicus} PDB: 3gj4_B*
Probab=38.56 E-value=6.6 Score=26.91 Aligned_cols=18 Identities=28% Similarity=0.661 Sum_probs=0.0
Q ss_pred CCCCccccccchhhhhhH
Q 037252 79 DVGNFYCPYCWYKCELMR 96 (138)
Q Consensus 79 d~G~fyCP~C~yk~a~~~ 96 (138)
..|+|.|+.|.+.....+
T Consensus 5 ~~g~W~C~~C~~~N~~~~ 22 (92)
T 3gj8_B 5 SVGSWECPVCCVSNKAED 22 (92)
T ss_dssp ------------------
T ss_pred CCcCCCCCcCCCEecccc
Confidence 468999999998877654
No 135
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=38.53 E-value=32 Score=21.20 Aligned_cols=40 Identities=20% Similarity=0.560 Sum_probs=28.0
Q ss_pred CCCcCCCcccccccccccCCCccEEecCCCCCcccccccccCCC
Q 037252 31 DFTDVDFLEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCG 74 (138)
Q Consensus 31 ~~~~~~~~~~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~ 74 (138)
.+...-++ ...|-.|++.=--+ |.|. .|-..+|.+|....
T Consensus 6 rF~~~t~~-~t~C~~C~k~i~~G-~kC~--~Ck~~cH~kC~~~v 45 (49)
T 1kbe_A 6 RFSTKSWL-SQVCNVCQKSMIFG-VKCK--HCRLKCHNKCTKEA 45 (49)
T ss_dssp CEEEECCS-SCCCSSSCCSSCCE-EEET--TTTEEESSSCTTTS
T ss_pred ccCccCCC-CcCccccCceeECc-CCCC--CCCCccchhhcCcC
Confidence 33333344 26788887654334 6899 99999999999843
No 136
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=38.37 E-value=12 Score=31.14 Aligned_cols=13 Identities=38% Similarity=0.866 Sum_probs=10.8
Q ss_pred CCCCCccccccch
Q 037252 78 DDVGNFYCPYCWY 90 (138)
Q Consensus 78 dd~G~fyCP~C~y 90 (138)
-|..|||||.|.-
T Consensus 52 ~PVaDF~C~~C~E 64 (257)
T 4esj_A 52 RPVADFYCNHCSE 64 (257)
T ss_dssp -CCCEEECTTTCC
T ss_pred CcccccccCCcch
Confidence 4899999999974
No 137
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.89 E-value=14 Score=22.65 Aligned_cols=48 Identities=25% Similarity=0.569 Sum_probs=29.8
Q ss_pred cccccccccCCC--ccEEecCCCCCcccccccccCCC---Ccc------CCCCCccccccchh
Q 037252 40 EEPCIKCNRQRD--ENLLVCSQSGCPISVHENCLSCG---VKF------DDVGNFYCPYCWYK 91 (138)
Q Consensus 40 ~d~C~~C~~~G~--e~LL~Cd~~gCp~s~H~~Cl~~~---~~~------dd~G~fyCP~C~yk 91 (138)
...|..|++.-. +.++.-. -..||..|+... .++ ...|..||..|..+
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~----~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~ 63 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKLEYG----GQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYEN 63 (72)
T ss_dssp CCBCSSSCCBCCSSSCEECST----TCCEETTTCBCTTTCCBTTTSCEEEETTEEEEHHHHHH
T ss_pred CCCCccCCCccccCccEEEEC----ccccCcccCeECCCCCcCCCCccCCcCCeEECHHHHHH
Confidence 468999988644 2355544 257898887742 122 23567778777643
No 138
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.56 E-value=26 Score=21.28 Aligned_cols=48 Identities=17% Similarity=0.517 Sum_probs=29.1
Q ss_pred cccccccccCCCccEEecCCCCCcccccccccCCC---Ccc------CCCCCccccccchh
Q 037252 40 EEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCG---VKF------DDVGNFYCPYCWYK 91 (138)
Q Consensus 40 ~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~---~~~------dd~G~fyCP~C~yk 91 (138)
...|..|++.-....+.-. -..||..|+... .++ ...|..||..|..+
T Consensus 5 ~~~C~~C~~~I~~~~~~a~----~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~ 61 (70)
T 2d8z_A 5 SSGCVQCKKPITTGGVTYR----EQPWHKECFVCTACRKQLSGQRFTARDDFAYCLNCFCD 61 (70)
T ss_dssp CCBCSSSCCBCCSSEEESS----SSEEETTTSBCSSSCCBCTTSCCEESSSSEECHHHHHH
T ss_pred CCCCcccCCeeccceEEEC----ccccCCCCCccCCCCCcCCcCceEeeCCeEECHHHHHH
Confidence 4678888875543234333 257888887642 111 34678888888644
No 139
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=36.05 E-value=18 Score=22.68 Aligned_cols=14 Identities=21% Similarity=0.600 Sum_probs=11.1
Q ss_pred CCCccccccchhhh
Q 037252 80 VGNFYCPYCWYKCE 93 (138)
Q Consensus 80 ~G~fyCP~C~yk~a 93 (138)
..+|.||.|-..+.
T Consensus 34 P~dw~CP~Cg~~K~ 47 (52)
T 1e8j_A 34 PDDWACPVCGASKD 47 (52)
T ss_dssp CTTCCCSSSCCCTT
T ss_pred CCCCcCCCCCCcHH
Confidence 56899999987653
No 140
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.99 E-value=19 Score=22.32 Aligned_cols=49 Identities=20% Similarity=0.495 Sum_probs=31.6
Q ss_pred ccccccccccCCC--ccEEecCCCCCcccccccccCCCC---c------cCCCCCccccccchh
Q 037252 39 EEEPCIKCNRQRD--ENLLVCSQSGCPISVHENCLSCGV---K------FDDVGNFYCPYCWYK 91 (138)
Q Consensus 39 ~~d~C~~C~~~G~--e~LL~Cd~~gCp~s~H~~Cl~~~~---~------~dd~G~fyCP~C~yk 91 (138)
....|..|++.-. +.++.-. -..||..|+.... + +...|..||..|..+
T Consensus 10 ~~~~C~~C~~~I~~~~~~~~a~----~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~ 69 (77)
T 1g47_A 10 ASATCERCKGGFAPAEKIVNSN----GELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQM 69 (77)
T ss_dssp CCCBCSSSCCBCCSTTTCEEET----TEEECTTTCCCTTTCCCCGGGCSEEETTEEECHHHHHH
T ss_pred CCCCchhcCCccCCCceEEEeC----ccEeccccCeECCCCCCCCCCCeEeECCeEeCHHHHHH
Confidence 3578999998652 3455444 2478998887521 1 245677888888644
No 141
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=34.87 E-value=5.8 Score=28.87 Aligned_cols=50 Identities=20% Similarity=0.421 Sum_probs=34.2
Q ss_pred ccccccccccCCCccEEecCCCCCcccccccccCCCCccCCCCCccccccchhhhhh
Q 037252 39 EEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKCELM 95 (138)
Q Consensus 39 ~~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~a~~ 95 (138)
++..|.+|...=.+-++ ..|--.|+..|+..-+ ..+.+.||.|.......
T Consensus 77 ~~~~C~IC~~~~~~pv~----~~CgH~fC~~Ci~~~~---~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVT----TECFHNVCKDCLQRSF---KAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSEEE----CTTSCEEEHHHHHHHH---HTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcCCEE----cCCCCchhHHHHHHHH---HhCCCcCCCCCccCCCC
Confidence 45679999875543233 2577889999997432 24678999998776543
No 142
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A
Probab=34.80 E-value=13 Score=20.45 Aligned_cols=15 Identities=13% Similarity=0.432 Sum_probs=11.6
Q ss_pred CCCCccccccchhhh
Q 037252 79 DVGNFYCPYCWYKCE 93 (138)
Q Consensus 79 d~G~fyCP~C~yk~a 93 (138)
+++.|.||.|-|...
T Consensus 3 ~~~~W~C~~CTf~N~ 17 (31)
T 1nj3_A 3 TSAMWACQHCTFMNQ 17 (31)
T ss_dssp CSCCEECSSSCCEEC
T ss_pred CCccccCCcccccCC
Confidence 456899999987653
No 143
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.33 E-value=49 Score=20.43 Aligned_cols=48 Identities=21% Similarity=0.496 Sum_probs=30.3
Q ss_pred cccccccccCCC-ccEEecCCCCCcccccccccCCC---Cc------cCCCCCcccc-ccchh
Q 037252 40 EEPCIKCNRQRD-ENLLVCSQSGCPISVHENCLSCG---VK------FDDVGNFYCP-YCWYK 91 (138)
Q Consensus 40 ~d~C~~C~~~G~-e~LL~Cd~~gCp~s~H~~Cl~~~---~~------~dd~G~fyCP-~C~yk 91 (138)
...|..|++.-. ..++.-. -..||..|+... .+ +...|..||. .|..+
T Consensus 9 ~~~C~~C~~~I~~~~~v~a~----~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~ 67 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSSL----GKDWHKFCLKCERCSKTLTPGGHAEHDGKPFCHKPCYAT 67 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEET----TEEEETTTCBCSSSCCBCCTTSCEEETTEEECTTTHHHH
T ss_pred CCCCcCCCCEeECCeEEEEC----CeEeeCCCCCCCCCCCccCCCceEeECCEEecchHHHHH
Confidence 578999998543 2245433 368998887641 12 2345788998 68754
No 144
>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: g.49.1.1
Probab=34.30 E-value=21 Score=24.43 Aligned_cols=40 Identities=18% Similarity=0.418 Sum_probs=26.4
Q ss_pred CCcCCCcccccccccccCCC--c--cEEecCCCCCcccccccccCC
Q 037252 32 FTDVDFLEEEPCIKCNRQRD--E--NLLVCSQSGCPISVHENCLSC 73 (138)
Q Consensus 32 ~~~~~~~~~d~C~~C~~~G~--e--~LL~Cd~~gCp~s~H~~Cl~~ 73 (138)
|.....--.-.|.+|++.=. . .=+.|- =|.+.+|..|...
T Consensus 30 WveGNl~~~s~C~vC~k~c~s~~~L~g~rC~--WCq~~VH~~C~~~ 73 (84)
T 1r79_A 30 WLEGNLPVSAKCTVCDKTCGSVLRLQDWRCL--WCKAMVHTSCKES 73 (84)
T ss_dssp EEESCCCTTCBCSSSCCBCCCTTTCCCEEES--SSCCEECHHHHHH
T ss_pred EEccCCCCCCEeCCCCCEeCCccCCCCCCCc--ccChhHHHHHHHh
Confidence 33333333468999988611 1 135688 9999999999863
No 145
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=34.25 E-value=5.4 Score=27.42 Aligned_cols=50 Identities=26% Similarity=0.511 Sum_probs=33.7
Q ss_pred cccccccccccCCCccEEecCCCCCcccccccccCCCCccCCCCCccccccchhhhh
Q 037252 38 LEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKCEL 94 (138)
Q Consensus 38 ~~~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~a~ 94 (138)
.++..|.+|...=.+-+.. .|--.||..|+..-.. .+...||.|......
T Consensus 50 ~~~~~C~IC~~~~~~p~~~----~CgH~fC~~Ci~~~~~---~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELVFRPITT----VCQHNVCKDCLDRSFR---AQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBCSSEEEC----TTSCEEEHHHHHHHHH---TTCCBCTTTCCBCCT
T ss_pred ccCCCCCcCChHHcCcEEe----eCCCcccHHHHHHHHh---HCcCCCCCCCccCCC
Confidence 3456899998765432321 5778899999974322 566799999866543
No 146
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=34.13 E-value=4.6 Score=27.04 Aligned_cols=53 Identities=19% Similarity=0.378 Sum_probs=36.6
Q ss_pred CcccccccccccCCCccEEecCCCCCcccccccccCCCCccCCCCCccccccchhhhhh
Q 037252 37 FLEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKCELM 95 (138)
Q Consensus 37 ~~~~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~a~~ 95 (138)
..++..|.+|...=. .-+.|- .|--.||..|+..-.. .....||.|.......
T Consensus 19 l~~~~~C~IC~~~~~-~p~~~~--~CgH~FC~~Ci~~~~~---~~~~~CP~Cr~~~~~~ 71 (100)
T 3lrq_A 19 IAEVFRCFICMEKLR-DARLCP--HCSKLCCFSCIRRWLT---EQRAQCPHCRAPLQLR 71 (100)
T ss_dssp HHHHTBCTTTCSBCS-SEEECT--TTCCEEEHHHHHHHHH---HTCSBCTTTCCBCCGG
T ss_pred CCCCCCCccCCcccc-CccccC--CCCChhhHHHHHHHHH---HCcCCCCCCCCcCCHH
Confidence 445678999987765 344445 7889999999974322 2237899998776543
No 147
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.88 E-value=25 Score=21.45 Aligned_cols=49 Identities=18% Similarity=0.428 Sum_probs=30.3
Q ss_pred ccccccccccCCC--ccEEecCCCCCcccccccccCCC---Cc------cCCCCCccccccchh
Q 037252 39 EEEPCIKCNRQRD--ENLLVCSQSGCPISVHENCLSCG---VK------FDDVGNFYCPYCWYK 91 (138)
Q Consensus 39 ~~d~C~~C~~~G~--e~LL~Cd~~gCp~s~H~~Cl~~~---~~------~dd~G~fyCP~C~yk 91 (138)
....|..|++.-. +.++.-. -..||..|+... .+ +...|..||..|..+
T Consensus 4 ~~~~C~~C~~~I~~~~~~~~a~----~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~ 63 (72)
T 1x61_A 4 GSSGCGGCGEDVVGDGAGVVAL----DRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVA 63 (72)
T ss_dssp CCCCCSSSCSCCCSSSCCEECS----SSEECTTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHH
T ss_pred CCCCCccCCCccCCCceEEEEC----CCeEcccCCcccccCCcCCcCcCEeeCCeEECHHHHHH
Confidence 3568999987432 2245444 267888887641 12 234578899888743
No 148
>4cpa_I Metallocarboxypeptidase inhibitor; hydrolase (C-terminal peptidase); 2.50A {Solanum tuberosum} SCOP: g.3.2.1 PDB: 1h20_A
Probab=33.45 E-value=13 Score=22.61 Aligned_cols=13 Identities=38% Similarity=1.252 Sum_probs=11.2
Q ss_pred CCCCCccccccch
Q 037252 78 DDVGNFYCPYCWY 90 (138)
Q Consensus 78 dd~G~fyCP~C~y 90 (138)
|=+|-|||..||.
T Consensus 17 DCS~gw~CqaC~n 29 (38)
T 4cpa_I 17 DCSGAWFCQACWN 29 (38)
T ss_dssp SSCCCSSCCEEET
T ss_pred ccccchHHHHHHh
Confidence 5678999999995
No 149
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus}
Probab=33.30 E-value=17 Score=23.02 Aligned_cols=40 Identities=20% Similarity=0.480 Sum_probs=29.6
Q ss_pred CCCCcCCCcccccccccccC--C---CccEEecCCCCCcccccccccCC
Q 037252 30 GDFTDVDFLEEEPCIKCNRQ--R---DENLLVCSQSGCPISVHENCLSC 73 (138)
Q Consensus 30 ~~~~~~~~~~~d~C~~C~~~--G---~e~LL~Cd~~gCp~s~H~~Cl~~ 73 (138)
+.|....+..-.+|-.|++- | | =+.|. .|-+.+|.+|...
T Consensus 14 H~F~~~~~~~pt~C~~C~~~l~Gl~~q--g~~C~--~C~~~~Hk~C~~~ 58 (66)
T 1y8f_A 14 HNFEVWTATTPTYCYECEGLLWGIARQ--GMRCT--ECGVKCHEKCQDL 58 (66)
T ss_dssp CCEEEEECSSCCCCTTTCCCCCSSCCE--EEEET--TTCCEECTTHHHH
T ss_pred cccEeeeCCCCcChhhcChhhcccCcc--eeEcC--CCCCeeCHHHHhh
Confidence 44555445556789999763 2 4 68899 9999999999874
No 150
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=33.03 E-value=38 Score=22.02 Aligned_cols=40 Identities=28% Similarity=0.500 Sum_probs=27.9
Q ss_pred CCCCc-CCCccccccccccc--CCCccEEecCCCCCcccccccccCC
Q 037252 30 GDFTD-VDFLEEEPCIKCNR--QRDENLLVCSQSGCPISVHENCLSC 73 (138)
Q Consensus 30 ~~~~~-~~~~~~d~C~~C~~--~G~e~LL~Cd~~gCp~s~H~~Cl~~ 73 (138)
+.|.. .-+.--..|-.|+. ..| -+.|. .|-+.+|.+|...
T Consensus 24 H~F~~~~~~~~pt~C~~C~~~l~~q--G~kC~--~C~~~cHkkC~~~ 66 (72)
T 2fnf_X 24 HRFVELALRGGPGWCDLCGREVLRQ--ALRCA--NCKFTCHSECRSL 66 (72)
T ss_dssp CCCEECCCCSSCCBCTTTSSBCSSC--CEECT--TSSCEECTGGGGG
T ss_pred CccceeecCCCCcchhhhhHHHHhC--cCccC--CCCCeechhhhcc
Confidence 44444 44444567888864 334 57899 9999999999874
No 151
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.57 E-value=24 Score=22.23 Aligned_cols=49 Identities=20% Similarity=0.470 Sum_probs=30.4
Q ss_pred cccccccccCCCccEEecCCCCCcccccccccCCC--------CccC-C-CCCccccccchhh
Q 037252 40 EEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCG--------VKFD-D-VGNFYCPYCWYKC 92 (138)
Q Consensus 40 ~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~--------~~~d-d-~G~fyCP~C~yk~ 92 (138)
...|..|++.-.+.+|.=. -..||..|+... ..|- . .|..||..|..+.
T Consensus 15 ~~~C~~C~~~I~~~~~~a~----~~~~H~~CF~C~~C~~~L~~~~f~~~~~g~~yC~~cy~~~ 73 (81)
T 2dlo_A 15 LEKCATCSQPILDRILRAM----GKAYHPGCFTCVVCHRGLDGIPFTVDATSQIHCIEDFHRK 73 (81)
T ss_dssp CCBCTTTCCBCCSCCEEET----TEEECTTTCBCSSSCCBCTTSCEECCTTCCCEEHHHHHHH
T ss_pred CCccccCCCeecceeEEEC----CccccHHhcCcccCCCccCCCeeEECCCCEEECHHHHHHH
Confidence 5688888876543344333 257888887642 1232 2 5789998887554
No 152
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=32.26 E-value=15 Score=26.99 Aligned_cols=52 Identities=25% Similarity=0.455 Sum_probs=37.7
Q ss_pred cccccccccccCCCccEE-----ecCCCCCcccccccccCCCCccCCCCCccccccchhhh
Q 037252 38 LEEEPCIKCNRQRDENLL-----VCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKCE 93 (138)
Q Consensus 38 ~~~d~C~~C~~~G~e~LL-----~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~a 93 (138)
.++..|+.|...=. +| .|. .|..-|=.+|-.........-.|.|-.|...+.
T Consensus 53 ~~~~~C~~C~~~~g--~l~~~g~~C~--~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~re 109 (134)
T 1zbd_B 53 DGVNRCILCGEQLG--MLGSASVVCE--DCKKNVCTKCGVETSNNRPHPVWLCKICLEQRE 109 (134)
T ss_dssp CSSSBCSSSCCBCS--TTSCCEEECT--TTCCEEETTSEEECCCSSSSCCEEEHHHHHHHH
T ss_pred CCCccccccCCCcc--cccCCCCCCC--CCCcccccccCCccCCCCCccceechhhHHHHH
Confidence 35788999987653 33 677 798888888877543335567899999986443
No 153
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.80 E-value=21 Score=22.28 Aligned_cols=49 Identities=18% Similarity=0.598 Sum_probs=30.0
Q ss_pred cccccccccCCCc----cEEecCCCCCcccccccccCCC---Ccc------CCCCCccccccchhh
Q 037252 40 EEPCIKCNRQRDE----NLLVCSQSGCPISVHENCLSCG---VKF------DDVGNFYCPYCWYKC 92 (138)
Q Consensus 40 ~d~C~~C~~~G~e----~LL~Cd~~gCp~s~H~~Cl~~~---~~~------dd~G~fyCP~C~yk~ 92 (138)
...|..|++.=.. ..+.-. -..||..|+... .++ ...|..||..|..+.
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~~a~----~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~ 66 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFICFQ----DSQWHSECFNCGKCSVSLVGKGFLTQNKEIFCQKCGSGM 66 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEEEET----TEEEEGGGCBCTTTCCBCSSSCEEEETTEEEETTTTCCC
T ss_pred CCCCccCCCcccCCCCceeEEEC----CcccCcccCChhhCCCcCCCCceEeECCEEECHHHhhhh
Confidence 4678888874321 255444 257888887642 222 345778998887654
No 154
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=31.76 E-value=20 Score=30.93 Aligned_cols=44 Identities=27% Similarity=0.526 Sum_probs=34.2
Q ss_pred CCCCCCcCCCcccccccccccC--CC-ccEEecCCCCCcccccccccCC
Q 037252 28 RSGDFTDVDFLEEEPCIKCNRQ--RD-ENLLVCSQSGCPISVHENCLSC 73 (138)
Q Consensus 28 ~~~~~~~~~~~~~d~C~~C~~~--G~-e~LL~Cd~~gCp~s~H~~Cl~~ 73 (138)
..|.|....+..-..|..|++- |- ..-+.|. .|-..+|.+|...
T Consensus 517 ~~H~F~~~~~~~~t~C~~C~~~l~gl~~qg~~C~--~C~~~vHk~C~~~ 563 (587)
T 3ky9_A 517 NGHDFQMFSFEETTSCKACQMLLRGTFYQGYRCH--RCRASAHKECLGR 563 (587)
T ss_dssp GGCCEEEECCSSCCBCTTTCSBCCSSSCCEEEET--TTCCEECSGGGGG
T ss_pred cCCceeEEeCCCCcccccccccccccccCCcCCC--CCCCccchhhhhc
Confidence 4566766667778899999875 31 1268999 9999999999994
No 155
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.50 E-value=24 Score=21.52 Aligned_cols=48 Identities=21% Similarity=0.470 Sum_probs=30.2
Q ss_pred cccccccccCCC--ccEEecCCCCCcccccccccCCC---Ccc------CCCCCccccccchh
Q 037252 40 EEPCIKCNRQRD--ENLLVCSQSGCPISVHENCLSCG---VKF------DDVGNFYCPYCWYK 91 (138)
Q Consensus 40 ~d~C~~C~~~G~--e~LL~Cd~~gCp~s~H~~Cl~~~---~~~------dd~G~fyCP~C~yk 91 (138)
...|..|++.-. +.++.-. -..||..|+... .++ ...|..||..|..+
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~----~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~ 63 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRKMEYK----GSSWHETCFICHRCQQPIGTKSFIPKDNQNFCVPCYEK 63 (72)
T ss_dssp CCCBSSSCCCCCSSSCEEEET----TEEEETTTTCCSSSCCCCCSSSEEEETTEEEEHHHHHH
T ss_pred CCCCccCCCcccCCceEEEEC----cCeecccCCcccccCCccCCCccCccCCeEECHHHHhH
Confidence 468999988655 3355544 257899887752 111 34567788777643
No 156
>4hn5_A Glucocorticoid receptor; glucocorticoid receptor, steroid receptors, NGRE, repre transcription; HET: DNA; 1.90A {Homo sapiens} PDB: 4hn6_A*
Probab=31.40 E-value=12 Score=27.19 Aligned_cols=54 Identities=22% Similarity=0.583 Sum_probs=34.9
Q ss_pred ccccccccccCCCc---cEEecCCCCCccccc--------ccccCCC-CccCCCCCccccccchhhhh
Q 037252 39 EEEPCIKCNRQRDE---NLLVCSQSGCPISVH--------ENCLSCG-VKFDDVGNFYCPYCWYKCEL 94 (138)
Q Consensus 39 ~~d~C~~C~~~G~e---~LL~Cd~~gCp~s~H--------~~Cl~~~-~~~dd~G~fyCP~C~yk~a~ 94 (138)
....|.+|++.... +++.|. +|..=|- ..|.... =..+..+.+.|++|.+++=.
T Consensus 28 ~~~~C~VCgd~a~G~HyGv~sC~--aCk~FFRRsv~~~~~y~C~~~~~C~i~~~~r~~Cr~CRl~KCl 93 (117)
T 4hn5_A 28 PPKLCLVCSDEASGCHYGVLTCG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCL 93 (117)
T ss_dssp --CBCTTTCSBCCEEETTEEECH--HHHHHHHHHHSSCCCCCCSSSSCCCCSTTTTTTCHHHHHHHHH
T ss_pred CCCcCCcCCCcCcccccCCcccc--hhhhhhhcceecCCceecCCCCccccCcccccCCcccchHHHh
Confidence 35689999987653 789999 9964332 2454321 12245678899999887654
No 157
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.92 E-value=22 Score=21.67 Aligned_cols=49 Identities=20% Similarity=0.486 Sum_probs=29.3
Q ss_pred cccccccccCCCccEEecCCCCCcccccccccCCC---Cc-----c-CCCCCccccccchhh
Q 037252 40 EEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCG---VK-----F-DDVGNFYCPYCWYKC 92 (138)
Q Consensus 40 ~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~---~~-----~-dd~G~fyCP~C~yk~ 92 (138)
...|..|++.=....+.-. -..||..|+... .+ | ...|..||..|..+.
T Consensus 5 ~~~C~~C~~~I~~~~~~a~----~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~ 62 (70)
T 2d8x_A 5 SSGCHQCGEFIIGRVIKAM----NNSWHPECFRCDLCQEVLADIGFVKNAGRHLCRPCHNRE 62 (70)
T ss_dssp SSBCSSSCCBCCSCCEEET----TEEECTTTSBCSSSCCBCSSSCCEEETTEEECHHHHHHH
T ss_pred CCcCccCCCEecceEEEEC----cccccccCCEeCCCCCcCCCCccEeECCeEECHHHhhhh
Confidence 4678888875332244333 257898887742 12 2 246778888886543
No 158
>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C
Probab=30.91 E-value=18 Score=20.29 Aligned_cols=16 Identities=13% Similarity=0.345 Sum_probs=12.6
Q ss_pred CCCCCccccccchhhh
Q 037252 78 DDVGNFYCPYCWYKCE 93 (138)
Q Consensus 78 dd~G~fyCP~C~yk~a 93 (138)
.+...|.||.|-|...
T Consensus 4 ~~~~~W~C~~CT~~N~ 19 (34)
T 3a9j_C 4 HMGAQWNCTACTFLNH 19 (34)
T ss_dssp BCCCCEECTTTCCEEC
T ss_pred CCCCcCCCCCCccccC
Confidence 4667899999988654
No 159
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=30.60 E-value=18 Score=22.92 Aligned_cols=15 Identities=20% Similarity=0.350 Sum_probs=11.7
Q ss_pred CCCCccccccchhhh
Q 037252 79 DVGNFYCPYCWYKCE 93 (138)
Q Consensus 79 d~G~fyCP~C~yk~a 93 (138)
-..+|.||.|-..+.
T Consensus 33 lP~dw~CP~Cga~K~ 47 (55)
T 2v3b_B 33 IPADWVCPDCGVGKI 47 (55)
T ss_dssp SCTTCCCTTTCCCGG
T ss_pred CCCCCcCCCCCCCHH
Confidence 356899999987654
No 160
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=30.45 E-value=25 Score=23.84 Aligned_cols=47 Identities=23% Similarity=0.461 Sum_probs=30.7
Q ss_pred cccccccccccCCCccEEecCCCCCcccccccccCCCCccCCCCCccccccchhhh
Q 037252 38 LEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKCE 93 (138)
Q Consensus 38 ~~~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~a 93 (138)
.++-.|.+|...-.+-++.. .|--+|+..|+..... ..||.|.....
T Consensus 20 ~~~~~C~IC~~~~~~pv~~~---~CgH~fC~~Ci~~~~~------~~CP~Cr~~~~ 66 (117)
T 1jm7_B 20 EKLLRCSRCTNILREPVCLG---GCEHIFCSNCVSDCIG------TGCPVCYTPAW 66 (117)
T ss_dssp HHTTSCSSSCSCCSSCBCCC---SSSCCBCTTTGGGGTT------TBCSSSCCBCS
T ss_pred hhCCCCCCCChHhhCccEeC---CCCCHHHHHHHHHHhc------CCCcCCCCcCc
Confidence 44678999987654322211 3557888889874432 78999986653
No 161
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=29.75 E-value=7.9 Score=25.43 Aligned_cols=49 Identities=14% Similarity=0.290 Sum_probs=32.8
Q ss_pred ccccccccccCCCccEEecCCCCCcccccccccCCCCccCCCCCccccccchhhhh
Q 037252 39 EEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKCEL 94 (138)
Q Consensus 39 ~~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~a~ 94 (138)
++..|.+|...-.+-+.. - .|--.||..|+..-.. ....||.|......
T Consensus 21 ~~~~C~IC~~~~~~p~~~-~--~CgH~fC~~Ci~~~~~----~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMII-P--QCSHNYCSLCIRKFLS----YKTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSSEEEC-T--TTCCEEEHHHHHHHHT----TCCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCCcCEE-C--CCCCHhhHHHHHHHHH----CCCCCCCCCCcCCh
Confidence 456899998776533322 2 5668999999974322 24689999876553
No 162
>4b2v_A S64; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=29.68 E-value=22 Score=20.68 Aligned_cols=15 Identities=20% Similarity=0.654 Sum_probs=11.8
Q ss_pred ccCCCCCccccccch
Q 037252 76 KFDDVGNFYCPYCWY 90 (138)
Q Consensus 76 ~~dd~G~fyCP~C~y 90 (138)
.-+..|+|.|-.|..
T Consensus 12 dpekmgdwccgrcir 26 (32)
T 4b2v_A 12 DPEKMGDWCCGRCIR 26 (32)
T ss_dssp CTTTTCCCCSSEEET
T ss_pred ChHHhcchhhhHHHH
Confidence 346789999999973
No 163
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=29.16 E-value=23 Score=21.86 Aligned_cols=15 Identities=20% Similarity=0.534 Sum_probs=11.5
Q ss_pred CCCCccccccchhhh
Q 037252 79 DVGNFYCPYCWYKCE 93 (138)
Q Consensus 79 d~G~fyCP~C~yk~a 93 (138)
-..+|.||.|-..+.
T Consensus 27 lP~dw~CP~Cg~~k~ 41 (46)
T 6rxn_A 27 LPDDWCCPVCGVSKD 41 (46)
T ss_dssp SCTTCBCTTTCCBGG
T ss_pred CCCCCcCcCCCCcHH
Confidence 356799999987653
No 164
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A*
Probab=29.03 E-value=7.6 Score=33.34 Aligned_cols=55 Identities=20% Similarity=0.466 Sum_probs=34.6
Q ss_pred CcccccccccccCCCc---cEEecCCCCCccccc--------ccccCCC-CccCCCCCccccccchhhh
Q 037252 37 FLEEEPCIKCNRQRDE---NLLVCSQSGCPISVH--------ENCLSCG-VKFDDVGNFYCPYCWYKCE 93 (138)
Q Consensus 37 ~~~~d~C~~C~~~G~e---~LL~Cd~~gCp~s~H--------~~Cl~~~-~~~dd~G~fyCP~C~yk~a 93 (138)
+.....|.+|++.... +++.|. +|-.=|- ..|.... =..+..+.+.|++|.+++=
T Consensus 134 ~~~~~~C~VCg~~a~g~hygv~sC~--~Ck~FFrR~~~~~~~~~C~~~~~C~i~~~~r~~C~~CR~~KC 200 (467)
T 3dzy_A 134 SFTKHICAICGDRSSGKHYGVYSCE--GCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKC 200 (467)
T ss_dssp ---CEECTTTSSEECSEETTEECCH--HHHHHHHHHHHTTCCCCCSSSSCCCCCSSSSSSCHHHHHHHH
T ss_pred CCCCCcceeCCCCCCCCcCCCcchh--hhhHhccccccCCCceeCCCCCCCCCCcccccccccchhhhh
Confidence 3445679999976642 799999 9953322 2454321 1235667889999998643
No 165
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=28.96 E-value=23 Score=22.16 Aligned_cols=15 Identities=20% Similarity=0.450 Sum_probs=11.7
Q ss_pred CCCCccccccchhhh
Q 037252 79 DVGNFYCPYCWYKCE 93 (138)
Q Consensus 79 d~G~fyCP~C~yk~a 93 (138)
-..+|.||.|-..+.
T Consensus 32 lP~dw~CP~Cg~~K~ 46 (52)
T 1yk4_A 32 LPDDWVCPLCGAPKS 46 (52)
T ss_dssp SCTTCBCTTTCCBGG
T ss_pred CCCCCcCCCCCCCHH
Confidence 357899999987654
No 166
>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens}
Probab=28.89 E-value=29 Score=21.58 Aligned_cols=24 Identities=33% Similarity=0.728 Sum_probs=17.2
Q ss_pred CcccccccccccCCCccEEecCCCCCccc
Q 037252 37 FLEEEPCIKCNRQRDENLLVCSQSGCPIS 65 (138)
Q Consensus 37 ~~~~d~C~~C~~~G~e~LL~Cd~~gCp~s 65 (138)
......|..|++. . |..|+ +|-.+
T Consensus 10 ~~~~~~C~~C~~~-~--~~~Cs--~C~~v 33 (60)
T 2od1_A 10 SDSSESCWNCGRK-A--SETCS--GCNTA 33 (60)
T ss_dssp -CCSSCCTTTSSC-C--CEECT--TTSCC
T ss_pred CCCCCccccCCCc-c--cccCC--CCCCe
Confidence 3345789999984 3 89999 77654
No 167
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=28.80 E-value=20 Score=24.76 Aligned_cols=19 Identities=21% Similarity=0.492 Sum_probs=13.4
Q ss_pred CccC-CCCCccccccchhhh
Q 037252 75 VKFD-DVGNFYCPYCWYKCE 93 (138)
Q Consensus 75 ~~~d-d~G~fyCP~C~yk~a 93 (138)
.+|+ -..+|.||.|-..+.
T Consensus 52 T~fedlPddW~CPvCga~K~ 71 (81)
T 2kn9_A 52 TRWDDIPDDWSCPDCGAAKS 71 (81)
T ss_dssp CCTTTSCTTCCCTTTCCCGG
T ss_pred CChhHCCCCCcCCCCCCCHH
Confidence 4454 356899999987654
No 168
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=28.73 E-value=23 Score=21.36 Aligned_cols=48 Identities=17% Similarity=0.372 Sum_probs=28.9
Q ss_pred cccccccccCCCccEEecCCCCCcccccccccCCC---Cc------cCCCCCccccccchh
Q 037252 40 EEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCG---VK------FDDVGNFYCPYCWYK 91 (138)
Q Consensus 40 ~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~---~~------~dd~G~fyCP~C~yk 91 (138)
...|..|++.-....+.-. -..||..|+... .+ +...|..||..|..+
T Consensus 5 ~~~C~~C~~~I~~~~~~a~----~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~~ 61 (66)
T 1nyp_A 5 VPICGACRRPIEGRVVNAM----GKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQ 61 (66)
T ss_dssp CCEETTTTEECCSCEECCT----TSBEETTTCBCTTTCCBCSSSCCEEETTEEECHHHHHH
T ss_pred CCCCcccCCEecceEEEEC----ccccccCcCEECCCCCCCCCCceEeECCcEECHHHHHH
Confidence 3568888875443344433 257888887642 11 234677888888643
No 169
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.57 E-value=41 Score=20.55 Aligned_cols=48 Identities=19% Similarity=0.585 Sum_probs=29.1
Q ss_pred cccccccccCCC----ccEEecCCCCCcccccccccCCC---Cc-----c-CCCCCccccccchh
Q 037252 40 EEPCIKCNRQRD----ENLLVCSQSGCPISVHENCLSCG---VK-----F-DDVGNFYCPYCWYK 91 (138)
Q Consensus 40 ~d~C~~C~~~G~----e~LL~Cd~~gCp~s~H~~Cl~~~---~~-----~-dd~G~fyCP~C~yk 91 (138)
...|..|++.=. +.+|.-. -..||..|+... .+ | ...|..||..|..+
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~a~----~~~wH~~CF~C~~C~~~L~~~~f~~~~g~~yC~~c~~~ 65 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYISFE----ERQWHNDCFNCKKCSLSLVGRGFLTERDDILCPDCGKD 65 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEECS----SCEECTTTCBCSSSCCBCTTSCCEECSSSEECHHHHHT
T ss_pred CCCCcCCCccccCCCCcceEEEC----CcccCcccCEeccCCCcCCCCccEeECCEEEChhHcCc
Confidence 467888887432 1244433 257888887642 11 1 25678888888654
No 170
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.27 E-value=34 Score=21.48 Aligned_cols=50 Identities=18% Similarity=0.478 Sum_probs=30.7
Q ss_pred cccccccccCCC--ccEEecCCCCCcccccccccCCC---Ccc------CCCCCccccccchhhh
Q 037252 40 EEPCIKCNRQRD--ENLLVCSQSGCPISVHENCLSCG---VKF------DDVGNFYCPYCWYKCE 93 (138)
Q Consensus 40 ~d~C~~C~~~G~--e~LL~Cd~~gCp~s~H~~Cl~~~---~~~------dd~G~fyCP~C~yk~a 93 (138)
...|..|++.-. +.++.-. -..||..|+... .++ ...|..||..|..+.-
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a~----~~~~H~~CF~C~~C~~~L~~~~f~~~~~~~~C~~c~~~~~ 75 (82)
T 2ehe_A 15 ANTCAECQQLIGHDSRELFYE----DRHFHEGCFRCCRCQRSLADEPFTCQDSELLCNDCYCSAF 75 (82)
T ss_dssp SCBCTTTCCBCCSSCCBCCCS----SCCCBTTTSBCTTTCCBCSSCCEEEETTEEEETTTSSCCG
T ss_pred CCcCccCCCccccCcEEEEeC----CccccccCCeecCCCCccCCCccEeeCCEEECHHHHhhhc
Confidence 357888888543 2355433 257888887642 222 3457789999886543
No 171
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.80 E-value=32 Score=21.54 Aligned_cols=48 Identities=23% Similarity=0.610 Sum_probs=30.0
Q ss_pred ccccccccCCCccEEecCCCCCcccccccccCC---------CCcc--CCCCCccccccchhh
Q 037252 41 EPCIKCNRQRDENLLVCSQSGCPISVHENCLSC---------GVKF--DDVGNFYCPYCWYKC 92 (138)
Q Consensus 41 d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~---------~~~~--dd~G~fyCP~C~yk~ 92 (138)
..|..|++.-.+..+.-. -..||..|+.. ...| +..|..||..|..+.
T Consensus 16 ~~C~~C~~~I~~~~~~a~----~~~~H~~CF~C~~C~~~L~~g~~f~~~~~~~~~C~~c~~~~ 74 (81)
T 1x6a_A 16 EFCHGCSLLMTGPFMVAG----EFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEV 74 (81)
T ss_dssp CBCTTTCCBCCSCCBCCT----TCCBCTTSCBCTTTCCBCCTTSCEEECSSSCEEEHHHHHHH
T ss_pred CcCccCCCCcCceEEEEC----CceeccccCCccCCCCccCCCCcEEEeeCCEEECHHHHHHH
Confidence 579999876443343322 36789888653 1233 457788998887544
No 172
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=27.16 E-value=14 Score=23.99 Aligned_cols=41 Identities=27% Similarity=0.706 Sum_probs=25.2
Q ss_pred ccccccccccCCCc-cEEecCCCCCcccccc-cccCCCCccCCCCCccccccchhh
Q 037252 39 EEEPCIKCNRQRDE-NLLVCSQSGCPISVHE-NCLSCGVKFDDVGNFYCPYCWYKC 92 (138)
Q Consensus 39 ~~d~C~~C~~~G~e-~LL~Cd~~gCp~s~H~-~Cl~~~~~~dd~G~fyCP~C~yk~ 92 (138)
++..|.+|-..-.+ -++.|. |. -|......+ +.||.|....
T Consensus 17 ~~~~C~IC~~~~~~~v~~pCg--------H~~~C~~C~~~~-----~~CP~Cr~~i 59 (79)
T 2yho_A 17 EAMLCMVCCEEEINSTFCPCG--------HTVCCESCAAQL-----QSCPVCRSRV 59 (79)
T ss_dssp HHTBCTTTSSSBCCEEEETTC--------BCCBCHHHHTTC-----SBCTTTCCBC
T ss_pred CCCEeEEeCcccCcEEEECCC--------CHHHHHHHHHhc-----CcCCCCCchh
Confidence 45689999765543 456677 55 344332222 5999997654
No 173
>3g9m_A Glucocorticoid receptor; glucocorticoid, DNA-binding, allostery, lever ARM, transcription, hormone; HET: DNA; 1.61A {Rattus norvegicus} SCOP: g.39.1.2 PDB: 3g6p_A* 3g6q_B* 3g6r_B* 3g6u_A* 3g8u_A* 3g8x_A* 3g97_B* 3g99_A* 3g9i_A* 3g9j_A* 3fyl_A* 3g9o_B* 3g9p_B* 3g6t_A* 1r4o_A 1r4r_A 1glu_A* 1gdc_A 2gda_A 1rgd_A ...
Probab=27.08 E-value=13 Score=25.35 Aligned_cols=52 Identities=23% Similarity=0.606 Sum_probs=34.2
Q ss_pred ccccccccCCCc---cEEecCCCCCccccc--------ccccCCC-CccCCCCCccccccchhhhh
Q 037252 41 EPCIKCNRQRDE---NLLVCSQSGCPISVH--------ENCLSCG-VKFDDVGNFYCPYCWYKCEL 94 (138)
Q Consensus 41 d~C~~C~~~G~e---~LL~Cd~~gCp~s~H--------~~Cl~~~-~~~dd~G~fyCP~C~yk~a~ 94 (138)
.+|.+|++.... +++.|. +|..=|- ..|.... =..+....+.|++|.+++=.
T Consensus 3 ~~C~VCg~~a~g~hyGv~sC~--~Ck~FFRR~v~~~~~~~C~~~~~C~i~~~~r~~C~~CR~~KCl 66 (90)
T 3g9m_A 3 HMCLVCSDEASGCHYGVLTCG--SCKVFFKRAVEGQHNYLCAGRNDCIIDKIRRKNCPACRYRKCL 66 (90)
T ss_dssp CBCTTTCSBCCEEETTEEECH--HHHHHHHHHHHSCCCCCCSSSSCCCCCTTGGGTCHHHHHHHHH
T ss_pred CcCccCCCcCcccccCCccch--hHhHHhhhhhhcCCceeCCCCCccccCcccccCCcchhhHHHH
Confidence 579999886652 788999 8964332 2454321 12245677899999988654
No 174
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=27.06 E-value=36 Score=23.34 Aligned_cols=46 Identities=20% Similarity=0.430 Sum_probs=29.1
Q ss_pred ccccccccCCC--ccEEecCCCCCcccccccccCCC---Ccc-------CCCCCccccccch
Q 037252 41 EPCIKCNRQRD--ENLLVCSQSGCPISVHENCLSCG---VKF-------DDVGNFYCPYCWY 90 (138)
Q Consensus 41 d~C~~C~~~G~--e~LL~Cd~~gCp~s~H~~Cl~~~---~~~-------dd~G~fyCP~C~y 90 (138)
+.|..|++.-. +.++.-. -..||..|+.+. ..+ ...|..||..|..
T Consensus 9 ~~C~~C~~~I~~~e~~~~a~----~~~~H~~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~ 66 (123)
T 2l3k_A 9 GLCASCDKRIRAYEMTMRVK----DKVYHLECFKCAACQKHFSVGDRYLLINSDIVCEQDIY 66 (123)
T ss_dssp CCCSSSSCCCCTTCCCCCCS----SCCCCTTTCBCTTTCCBCCTTCEEEECSSSEEEGGGHH
T ss_pred CcccCCCCeecCCceEEEEC----CcccccccCccccCCCCCCCCCcEEeeCCEEEcHHHhH
Confidence 57999988654 2343333 357898887642 111 3457889999873
No 175
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=26.66 E-value=9.6 Score=25.19 Aligned_cols=50 Identities=18% Similarity=0.296 Sum_probs=32.2
Q ss_pred cccccccccCCCccEEecCCCCCcccccccccCCCCccCCCCCccccccchhhhh
Q 037252 40 EEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKCEL 94 (138)
Q Consensus 40 ~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~a~ 94 (138)
...|.+|...=.+-++ - .|--.||..|+..-.. ...+.+.||.|......
T Consensus 21 ~~~C~IC~~~~~~p~~--~--~CgH~fC~~Ci~~~~~-~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 21 ILECPICLELIKEPVS--T--KCDHIFCKFCMLKLLN-QKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HTSCSSSCCCCSSCCB--C--TTSCCCCSHHHHHHHH-SSSSSCCCTTTSCCCCT
T ss_pred CCCCcccChhhcCeEE--C--CCCCHHHHHHHHHHHH-hCCCCCCCcCCCCcCCH
Confidence 4579999875542222 1 4668899999874222 22466899999875543
No 176
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=26.22 E-value=29 Score=22.99 Aligned_cols=15 Identities=27% Similarity=0.561 Sum_probs=11.7
Q ss_pred CCCCccccccchhhh
Q 037252 79 DVGNFYCPYCWYKCE 93 (138)
Q Consensus 79 d~G~fyCP~C~yk~a 93 (138)
-..+|.||.|-..+.
T Consensus 37 lPddw~CP~Cga~K~ 51 (70)
T 1dx8_A 37 LSDSFMCPACRSPKN 51 (70)
T ss_dssp SCTTCBCTTTCCBGG
T ss_pred CCCCCcCCCCCCCHH
Confidence 356899999987654
No 177
>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A
Probab=25.24 E-value=12 Score=26.54 Aligned_cols=20 Identities=30% Similarity=0.509 Sum_probs=13.9
Q ss_pred CCccCCCCCccccccchhhh
Q 037252 74 GVKFDDVGNFYCPYCWYKCE 93 (138)
Q Consensus 74 ~~~~dd~G~fyCP~C~yk~a 93 (138)
++.+..-.|+.||+|+.-..
T Consensus 12 ~~~i~~f~D~~Cp~C~~~~~ 31 (186)
T 3bci_A 12 KPLVVVYGDYKCPYCKELDE 31 (186)
T ss_dssp CCEEEEEECTTCHHHHHHHH
T ss_pred CeEEEEEECCCChhHHHHHH
Confidence 34455667999999975433
No 178
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=25.01 E-value=21 Score=21.27 Aligned_cols=8 Identities=38% Similarity=1.190 Sum_probs=3.7
Q ss_pred CCcccccc
Q 037252 81 GNFYCPYC 88 (138)
Q Consensus 81 G~fyCP~C 88 (138)
|.+.|+.|
T Consensus 23 gelvC~~C 30 (50)
T 1pft_A 23 GEIVCAKC 30 (50)
T ss_dssp TEEEESSS
T ss_pred CeEECccc
Confidence 44444444
No 179
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=24.66 E-value=13 Score=26.11 Aligned_cols=44 Identities=30% Similarity=0.536 Sum_probs=28.8
Q ss_pred cccccccccCCCcc-EEecCCCCCcccccccccCCCCccCCCCCccccccchhh
Q 037252 40 EEPCIKCNRQRDEN-LLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKC 92 (138)
Q Consensus 40 ~d~C~~C~~~G~e~-LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~ 92 (138)
+..|.+|...-.+- +| .|--.||..|+..-.. ....||.|....
T Consensus 53 ~~~C~iC~~~~~~~~~~-----~CgH~fc~~Ci~~~~~----~~~~CP~Cr~~~ 97 (138)
T 4ayc_A 53 ELQCIICSEYFIEAVTL-----NCAHSFCSYCINEWMK----RKIECPICRKDI 97 (138)
T ss_dssp HSBCTTTCSBCSSEEEE-----TTSCEEEHHHHHHHTT----TCSBCTTTCCBC
T ss_pred cCCCcccCcccCCceEC-----CCCCCccHHHHHHHHH----cCCcCCCCCCcC
Confidence 34699998765532 33 3668999999873221 245699997554
No 180
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.27 E-value=43 Score=20.89 Aligned_cols=48 Identities=19% Similarity=0.486 Sum_probs=30.7
Q ss_pred cccccccccCCC--ccEEecCCCCCcccccccccCCC---Ccc------CCCCCccccccchh
Q 037252 40 EEPCIKCNRQRD--ENLLVCSQSGCPISVHENCLSCG---VKF------DDVGNFYCPYCWYK 91 (138)
Q Consensus 40 ~d~C~~C~~~G~--e~LL~Cd~~gCp~s~H~~Cl~~~---~~~------dd~G~fyCP~C~yk 91 (138)
...|..|++.-. +.++.-. -..||..|+... .++ ...|..||..|..+
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a~----~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~ 73 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVEYK----GTVWHKDCFTCSNCKQVIGTGSFFPKGEDFYCVTCHET 73 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEECS----SCEEETTTCCCSSSCCCCTTSCEEEETTEEEEHHHHHH
T ss_pred CCcCccCCcccccCceEEEEC----ccccccccCchhhCCCccCCCccEeeCCEEECHHHHHH
Confidence 468999998655 4455544 258998887752 122 24567788777644
No 181
>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea}
Probab=23.80 E-value=24 Score=25.37 Aligned_cols=18 Identities=17% Similarity=0.529 Sum_probs=12.2
Q ss_pred ccCCCCCccccccchhhh
Q 037252 76 KFDDVGNFYCPYCWYKCE 93 (138)
Q Consensus 76 ~~dd~G~fyCP~C~yk~a 93 (138)
+++--.|+.||+|+....
T Consensus 9 ~I~~f~D~~CP~C~~~~~ 26 (216)
T 2in3_A 9 VLWYIADPMCSWCWGFAP 26 (216)
T ss_dssp EEEEEECTTCHHHHHHHH
T ss_pred eEEEEECCCCchhhcchH
Confidence 344456889999995433
No 182
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=23.69 E-value=37 Score=20.34 Aligned_cols=48 Identities=23% Similarity=0.538 Sum_probs=30.0
Q ss_pred ccccccccccCCC--ccEEecCCCCCcccccccccCCC---C------ccCCCCCccccccch
Q 037252 39 EEEPCIKCNRQRD--ENLLVCSQSGCPISVHENCLSCG---V------KFDDVGNFYCPYCWY 90 (138)
Q Consensus 39 ~~d~C~~C~~~G~--e~LL~Cd~~gCp~s~H~~Cl~~~---~------~~dd~G~fyCP~C~y 90 (138)
....|..|++.-. +.++.-. + ..||..|+... . -+.-.|..||..|..
T Consensus 10 ~~~~C~~C~~~i~~~e~~~~~~--~--~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~y~ 68 (72)
T 3f6q_B 10 ASATCERCKGGFAPAEKIVNSN--G--ELYHEQCFVCAQCFQQFPEGLFYEFEGRKYCEHDFQ 68 (72)
T ss_dssp TTCBCTTTCCBCCTTCEEEEET--T--EEEETTTSSCTTTCCCCGGGCCEEETTEEECHHHHH
T ss_pred CCccchhcCccccCCceEEEeC--c--CeeCcCCCcccCCCCCCCCCCeEeECCeEeCHHHHH
Confidence 3568999988644 3455444 2 46899987631 1 123457788887753
No 183
>2ebq_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.42 E-value=26 Score=21.88 Aligned_cols=21 Identities=14% Similarity=0.278 Sum_probs=15.2
Q ss_pred CccCCCCCccccccchhhhhh
Q 037252 75 VKFDDVGNFYCPYCWYKCELM 95 (138)
Q Consensus 75 ~~~dd~G~fyCP~C~yk~a~~ 95 (138)
-...++|.|-|+.|.+....+
T Consensus 4 ~~~~~~g~W~C~~C~v~N~a~ 24 (47)
T 2ebq_A 4 GSSGVIGTWDCDTCLVQNKPE 24 (47)
T ss_dssp SCCCCSSSEECSSSCCEECSS
T ss_pred CcCCCCCceECCeeeccCccC
Confidence 344678899999998776543
No 184
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=23.37 E-value=82 Score=19.33 Aligned_cols=23 Identities=35% Similarity=0.800 Sum_probs=17.2
Q ss_pred cccccccccccCCCccEEecCCCCCccc
Q 037252 38 LEEEPCIKCNRQRDENLLVCSQSGCPIS 65 (138)
Q Consensus 38 ~~~d~C~~C~~~G~e~LL~Cd~~gCp~s 65 (138)
.....|..|++. . |+.|+ +|-.+
T Consensus 13 ~~~~~C~~C~~~-~--~~~Cs--~C~~v 35 (60)
T 2dj8_A 13 DSSESCWNCGRK-A--SETCS--GCNTA 35 (60)
T ss_dssp CCSCCCSSSCSC-C--CEECT--TTSCC
T ss_pred CCCcccccCCCC-C--cccCC--CCCCE
Confidence 345789999983 3 89999 88654
No 185
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=23.19 E-value=9.7 Score=32.02 Aligned_cols=50 Identities=18% Similarity=0.515 Sum_probs=34.4
Q ss_pred cccccccccCCCc---cEEecCCCCCcccccc---------cccCCCCccCCCCCccccccchhh
Q 037252 40 EEPCIKCNRQRDE---NLLVCSQSGCPISVHE---------NCLSCGVKFDDVGNFYCPYCWYKC 92 (138)
Q Consensus 40 ~d~C~~C~~~G~e---~LL~Cd~~gCp~s~H~---------~Cl~~~~~~dd~G~fyCP~C~yk~ 92 (138)
...|.+|++.... +++.|. +|-.=|.. .|-+ .=..+..+.+.|.+|.+++
T Consensus 50 ~~~C~vC~~~~~g~hygv~~C~--~C~~FFrR~~~~~~~~~~c~~-~C~~~~~~r~~C~~CR~~k 111 (419)
T 3dzy_D 50 AIECRVCGDKASGFHYGVHACE--GCKGFFRRTIRLKLIYDRCDL-NCRIHKKSRNKCQYCRFQK 111 (419)
T ss_dssp CCCCSSSCSCCCSBCSSSBCCH--HHHHHHHHHHTTTCCCCCCCS-CCCCCTTGGGTCHHHHHHH
T ss_pred CCcCeECCCcCCCCccCcccch--hhhHHHccchhcccccccccC-CCCcccccCccchhhhHHH
Confidence 4579999987652 789999 89754432 2422 1133556778999999988
No 186
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=23.02 E-value=53 Score=20.34 Aligned_cols=40 Identities=28% Similarity=0.500 Sum_probs=27.6
Q ss_pred CCCCc-CCCccccccccccc--CCCccEEecCCCCCcccccccccCC
Q 037252 30 GDFTD-VDFLEEEPCIKCNR--QRDENLLVCSQSGCPISVHENCLSC 73 (138)
Q Consensus 30 ~~~~~-~~~~~~d~C~~C~~--~G~e~LL~Cd~~gCp~s~H~~Cl~~ 73 (138)
+.|.. ..+..-..|-.|+. ..| =+.|. .|-+.+|.+|...
T Consensus 11 H~F~~~~~~~~pt~C~~C~~~i~kq--g~kC~--~C~~~cH~kC~~~ 53 (59)
T 1rfh_A 11 HRFVELALRGGPGWCDLCGREVLRQ--ALRCA--NCKFTCHSECRSL 53 (59)
T ss_dssp CCCEECCCSSCCEECTTTCSEECSC--CEECT--TTSCEECHHHHTT
T ss_pred CcCeeeeccCCCeEchhcchhhhhC--ccEeC--CCCCeEehhhhhh
Confidence 34444 44445567877754 234 57899 9999999999874
No 187
>1ynw_B Retinoic acid receptor RXR-alpha, retinoid X receptor; VDR, nuclear receptor, protein-DNA complex, transcripti complex; 3.00A {Homo sapiens} SCOP: g.39.1.2
Probab=22.77 E-value=23 Score=24.78 Aligned_cols=53 Identities=23% Similarity=0.509 Sum_probs=32.4
Q ss_pred cccccccccCCCc---cEEecCCCCCcccc--------cccccCCC-CccCCCCCccccccchhhhh
Q 037252 40 EEPCIKCNRQRDE---NLLVCSQSGCPISV--------HENCLSCG-VKFDDVGNFYCPYCWYKCEL 94 (138)
Q Consensus 40 ~d~C~~C~~~G~e---~LL~Cd~~gCp~s~--------H~~Cl~~~-~~~dd~G~fyCP~C~yk~a~ 94 (138)
...|.+|++.... +++.|. +|-.=| ...|.... =..+....+.|++|-+++=.
T Consensus 3 ~~~C~VCg~~a~g~hyGv~sC~--aCk~FFRR~v~~~~~y~C~~~~~C~i~~~~r~~C~~CR~~KCl 67 (99)
T 1ynw_B 3 KHICAICGDRSSGKHYGVYSCE--GCKGFFKRTVRKDLTYTCRDNKDCLIDKRQRNRCQYCRYQKCL 67 (99)
T ss_dssp --CBTTTBSCCCBCCTTSCBCS--HHHHHHHHHHHTTCCCCCSSSSCCCCCSTTSSSCHHHHHHHHH
T ss_pred CCCCceeCCCCcceeeCccchH--HHHHHHHhhhccccccccCCCCcccccccCCccCccccHHHHh
Confidence 4679999977542 688898 886433 23454321 12345567889999876643
No 188
>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A*
Probab=22.42 E-value=15 Score=28.06 Aligned_cols=18 Identities=11% Similarity=0.213 Sum_probs=13.6
Q ss_pred CCccCCCCCccccccchh
Q 037252 74 GVKFDDVGNFYCPYCWYK 91 (138)
Q Consensus 74 ~~~~dd~G~fyCP~C~yk 91 (138)
++.+..-.||.||+|..-
T Consensus 40 ~vtIvef~Dy~CP~C~~~ 57 (226)
T 3f4s_A 40 PILMIEYASLTCYHCSLF 57 (226)
T ss_dssp SEEEEEEECTTCHHHHHH
T ss_pred CEEEEEEECCCCHHHHHH
Confidence 445667789999999743
No 189
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.37 E-value=38 Score=21.11 Aligned_cols=48 Identities=21% Similarity=0.466 Sum_probs=29.1
Q ss_pred ccccccccCCCccEEecCCCCCcccccccccCC---CCcc-------CCCCCccccccchhh
Q 037252 41 EPCIKCNRQRDENLLVCSQSGCPISVHENCLSC---GVKF-------DDVGNFYCPYCWYKC 92 (138)
Q Consensus 41 d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~---~~~~-------dd~G~fyCP~C~yk~ 92 (138)
..|..|++.=....|.=. -..||..|+.. ..++ ...|..||+.|..+.
T Consensus 6 ~~C~~C~~~I~~~~v~a~----~~~wH~~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~~ 63 (73)
T 1wig_A 6 SGCDSCEKYITGRVLEAG----EKHYHPSCALCVRCGQMFAEGEEMYLQGSSIWHPACRQAA 63 (73)
T ss_dssp CSCSSSCCCCSSCCBCCS----SCCBCTTTSCCSSSCCCCCSSCCCEEETTEEECTTHHHHT
T ss_pred CCcccCCCEecCeeEEeC----CCCCCCCcCEeCCCCCCCCCCCeeEeeCCEEEChHHChHh
Confidence 578888875432244322 35899888764 2222 245778999997543
No 190
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=22.10 E-value=10 Score=25.30 Aligned_cols=49 Identities=27% Similarity=0.497 Sum_probs=31.5
Q ss_pred ccccccccccCCCc-----cEEecCCCCCcccccccccCCCCccCCCCCccccccchhhh
Q 037252 39 EEEPCIKCNRQRDE-----NLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKCE 93 (138)
Q Consensus 39 ~~d~C~~C~~~G~e-----~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~a 93 (138)
+...|.+|...=++ .+.... .|--.||..|+..-+. ....||.|.....
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~--~CgH~fc~~Ci~~~~~----~~~~CP~Cr~~~~ 124 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVST--ECGHVFCSQCLRDSLK----NANTCPTCRKKIN 124 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEE--TTSBEEEHHHHHHHHH----HCSBCTTTCCBCC
T ss_pred CCCCCCCCCCccccccccCcceEeC--CCCChhhHHHHHHHHH----cCCCCCCCCCcCC
Confidence 45679999765321 123333 5779999999985332 2358999986543
No 191
>4b2u_A S67; toxin, ICK; NMR {Sicarius dolichocephalus}
Probab=21.88 E-value=26 Score=20.86 Aligned_cols=12 Identities=25% Similarity=0.728 Sum_probs=9.9
Q ss_pred CCCCCccccccc
Q 037252 78 DDVGNFYCPYCW 89 (138)
Q Consensus 78 dd~G~fyCP~C~ 89 (138)
.-+|+|.|-.|+
T Consensus 14 pregdwcchkcv 25 (36)
T 4b2u_A 14 PREGDWCCHKCV 25 (36)
T ss_dssp GGGCCSSSSEEE
T ss_pred CCccCeeeeccc
Confidence 357999999886
No 192
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=21.74 E-value=19 Score=23.94 Aligned_cols=50 Identities=18% Similarity=0.369 Sum_probs=32.4
Q ss_pred CcccccccccccCCCccEEecCCCCCcccccccccCCCCccCCCCCccccccchhhh
Q 037252 37 FLEEEPCIKCNRQRDENLLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKCE 93 (138)
Q Consensus 37 ~~~~d~C~~C~~~G~e~LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~a 93 (138)
..++..|.+|...=.+-+. .. .|--+||..|+..-+. . ...||.|.....
T Consensus 12 ~~~~~~C~IC~~~~~~p~~-~~--~CgH~fC~~Ci~~~~~--~--~~~CP~Cr~~~~ 61 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFIDATT-II--ECLHSFCKTCIVRYLE--T--SKYCPICDVQVH 61 (108)
T ss_dssp HGGGTBCTTTSSBCSSEEE-ET--TTCCEEEHHHHHHHHT--S--CSBCTTTCCBSC
T ss_pred cCCcCCCccCChHHhCcCE-eC--CCCChhhHHHHHHHHH--h--CCcCcCCCcccc
Confidence 3456789999876543222 22 4668999999873322 1 278999986644
No 193
>2jz8_A Uncharacterized protein BH09830; zinc binding, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Bartonella henselae str}
Probab=21.55 E-value=61 Score=22.76 Aligned_cols=36 Identities=19% Similarity=0.510 Sum_probs=23.5
Q ss_pred EEecCCCCCcccccccccCCCCccCCCCCccccccchhhh
Q 037252 54 LLVCSQSGCPISVHENCLSCGVKFDDVGNFYCPYCWYKCE 93 (138)
Q Consensus 54 LL~Cd~~gCp~s~H~~Cl~~~~~~dd~G~fyCP~C~yk~a 93 (138)
.|.|+|.+=|+ -|.+=. +.++..|.--||||--+..
T Consensus 24 ~v~CdG~~~pl-gHPrVy---L~i~~~g~~~CpYCg~~y~ 59 (87)
T 2jz8_A 24 EFMCVGATQPF-DHPHIF---IDMGSTDEKICPYCSTLYR 59 (87)
T ss_dssp EEECCCSSCSS-SSSSCE---EECTTCCEECCTTTCCEEE
T ss_pred EEEcCCCCCCC-CCCEEE---EEcCCCCeEECCCCCCEeE
Confidence 46677665554 355422 3556789999999976543
No 194
>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans}
Probab=21.50 E-value=16 Score=27.48 Aligned_cols=17 Identities=18% Similarity=0.569 Sum_probs=13.4
Q ss_pred CCccCCCCCccccccch
Q 037252 74 GVKFDDVGNFYCPYCWY 90 (138)
Q Consensus 74 ~~~~dd~G~fyCP~C~y 90 (138)
++++..-.||-||||..
T Consensus 16 ~vtivef~D~~Cp~C~~ 32 (205)
T 3gmf_A 16 KLRLVEFVSYTCPHCSH 32 (205)
T ss_dssp SEEEEEEECTTCHHHHH
T ss_pred CeEEEEEECCCCHHHHH
Confidence 45566778999999973
No 195
>3kzq_A Putative uncharacterized protein VP2116; protein with unknown function, STRU genomics, PSI, MCSG, protein structure initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus}
Probab=21.13 E-value=31 Score=25.04 Aligned_cols=12 Identities=25% Similarity=0.822 Sum_probs=9.4
Q ss_pred CCccccccchhh
Q 037252 81 GNFYCPYCWYKC 92 (138)
Q Consensus 81 G~fyCP~C~yk~ 92 (138)
-|+.||+|+.-.
T Consensus 9 ~D~~CP~cy~~~ 20 (208)
T 3kzq_A 9 HDPMCSWCWGYK 20 (208)
T ss_dssp ECTTCHHHHHHH
T ss_pred ECCCCchhhhhh
Confidence 478999999544
No 196
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=20.93 E-value=32 Score=21.85 Aligned_cols=14 Identities=21% Similarity=0.650 Sum_probs=11.0
Q ss_pred CCCccccccchhhh
Q 037252 80 VGNFYCPYCWYKCE 93 (138)
Q Consensus 80 ~G~fyCP~C~yk~a 93 (138)
..+|.||.|-..+.
T Consensus 34 P~dw~CP~Cg~~K~ 47 (54)
T 4rxn_A 34 PDDWVCPLCGVGKD 47 (54)
T ss_dssp CTTCBCTTTCCBGG
T ss_pred CCCCcCcCCCCcHH
Confidence 46899999987653
No 197
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=20.86 E-value=22 Score=22.43 Aligned_cols=41 Identities=22% Similarity=0.479 Sum_probs=27.3
Q ss_pred cccccccccccCCCc-cEEecCCCCCccc-ccccccCCCCccCCCCCccccccchh
Q 037252 38 LEEEPCIKCNRQRDE-NLLVCSQSGCPIS-VHENCLSCGVKFDDVGNFYCPYCWYK 91 (138)
Q Consensus 38 ~~~d~C~~C~~~G~e-~LL~Cd~~gCp~s-~H~~Cl~~~~~~dd~G~fyCP~C~yk 91 (138)
.++..|.+|...-.+ -+|.|. -. |...|+..- ..||.|.-.
T Consensus 22 ~~~~~C~iC~~~~~~~~~~pCg-----H~~~C~~C~~~~--------~~CP~Cr~~ 64 (74)
T 4ic3_A 22 QEEKLCKICMDRNIAIVFVPCG-----HLVTCKQCAEAV--------DKCPMCYTV 64 (74)
T ss_dssp HHHTBCTTTSSSBCCEEEETTC-----CBCCCHHHHTTC--------SBCTTTCCB
T ss_pred ccCCCCCCCCCCCCCEEEcCCC-----ChhHHHHhhhcC--------ccCCCcCcC
Confidence 346789999876653 345665 44 666776632 789999754
No 198
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=20.82 E-value=30 Score=24.11 Aligned_cols=15 Identities=27% Similarity=0.496 Sum_probs=11.6
Q ss_pred CCCCccccccchhhh
Q 037252 79 DVGNFYCPYCWYKCE 93 (138)
Q Consensus 79 d~G~fyCP~C~yk~a 93 (138)
-..+|.||.|-..+.
T Consensus 65 lPddW~CPvCga~K~ 79 (87)
T 1s24_A 65 IPDDWCCPDCGATKE 79 (87)
T ss_dssp CCTTCCCSSSCCCGG
T ss_pred CCCCCCCCCCCCCHH
Confidence 456899999987654
Done!