BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037256
         (680 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4DWP|A Chain A, Semet Protelomerase Tela Covalently Complexed With
           Substrate Dna
          Length = 462

 Score = 30.8 bits (68), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 77  LWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSL--ILEGKVVHG 134
           LW+  +R + +NG   +TLELY    R+ + +        L  C    L   L   +  G
Sbjct: 62  LWDAEVRYHFDNGRTEKTLELYIXKYRNALKAEFGPKSTPLAICNXKKLRERLNTYIARG 121

Query: 135 DIIRTG 140
           D  +TG
Sbjct: 122 DYPKTG 127


>pdb|4E0G|A Chain A, Protelomerase Tela/dna Hairpin Product/vanadate Complex
          Length = 462

 Score = 29.6 bits (65), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 77  LWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSL--ILEGKVVHG 134
           LW+  +R + +NG   +TLELY    R+ + +        L  C    L   L   +  G
Sbjct: 62  LWDAEVRYHFDNGRTEKTLELYIMKYRNALKAEFGPKSTPLAICNMKKLRERLNTYIARG 121

Query: 135 DIIRTG 140
           D  +TG
Sbjct: 122 DYPKTG 127


>pdb|4HSP|A Chain A, Crystal Structure Of A Hypothetical Protein (Pa4066) From
           Pseudomonas Aeruginosa Pao1 At 2.45 A Resolution
          Length = 150

 Score = 29.6 bits (65), Expect = 5.2,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 22/45 (48%)

Query: 545 PAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGY 589
           P   + I Y K  +G    +   P+W E   KVE+ + E+  AGY
Sbjct: 91  PPPSNQIVYVKTAKGVQXDELYQPFWVEGTFKVENASSELAAAGY 135


>pdb|4E0J|A Chain A, Protelomerase Tela R255a Mutant Complexed With Dna Hairpin
           Product
          Length = 462

 Score = 29.6 bits (65), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 77  LWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSL--ILEGKVVHG 134
           LW+  +R + +NG   +TLELY    R+ + +        L  C    L   L   +  G
Sbjct: 62  LWDAEVRYHFDNGRTEKTLELYIMKYRNALKAEFGPKSTPLAICNMKKLRERLNTYIARG 121

Query: 135 DIIRTG 140
           D  +TG
Sbjct: 122 DYPKTG 127


>pdb|4E0P|A Chain A, Protelomerase Tela Covalently Complexed With Substrate Dna
 pdb|4E0Y|A Chain A, Protelomerase Tela Covalently Complexed With Mutated
           Substrate Dna
          Length = 462

 Score = 29.6 bits (65), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 77  LWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSL--ILEGKVVHG 134
           LW+  +R + +NG   +TLELY    R+ + +        L  C    L   L   +  G
Sbjct: 62  LWDAEVRYHFDNGRTEKTLELYIMKYRNALKAEFGPKSTPLAICNMKKLRERLNTYIARG 121

Query: 135 DIIRTG 140
           D  +TG
Sbjct: 122 DYPKTG 127


>pdb|4E0Z|A Chain A, Protelomerase Tela R205a Covalently Complexed With
           Substrate Dna
          Length = 462

 Score = 29.6 bits (65), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 77  LWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSL--ILEGKVVHG 134
           LW+  +R + +NG   +TLELY    R+ + +        L  C    L   L   +  G
Sbjct: 62  LWDAEVRYHFDNGRTEKTLELYIMKYRNALKAEFGPKSTPLAICNMKKLRERLNTYIARG 121

Query: 135 DIIRTG 140
           D  +TG
Sbjct: 122 DYPKTG 127


>pdb|4E10|A Chain A, Protelomerase Tela Y201a Covalently Complexed With
           Substrate Dna
          Length = 462

 Score = 29.6 bits (65), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 77  LWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSL--ILEGKVVHG 134
           LW+  +R + +NG   +TLELY    R+ + +        L  C    L   L   +  G
Sbjct: 62  LWDAEVRYHFDNGRTEKTLELYIMKYRNALKAEFGPKSTPLAICNMKKLRERLNTYIARG 121

Query: 135 DIIRTG 140
           D  +TG
Sbjct: 122 DYPKTG 127


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.135    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,359,430
Number of Sequences: 62578
Number of extensions: 824773
Number of successful extensions: 1858
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1851
Number of HSP's gapped (non-prelim): 16
length of query: 680
length of database: 14,973,337
effective HSP length: 105
effective length of query: 575
effective length of database: 8,402,647
effective search space: 4831522025
effective search space used: 4831522025
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)