Query 037256
Match_columns 680
No_of_seqs 791 out of 4663
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 10:22:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037256.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037256hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 2E-131 4E-136 1134.9 74.3 664 1-678 178-857 (857)
2 PLN03081 pentatricopeptide (PP 100.0 1E-123 3E-128 1044.5 70.3 605 74-680 86-697 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 1.2E-81 2.7E-86 722.3 54.4 645 1-676 77-747 (857)
4 PLN03218 maturation of RBCL 1; 100.0 3.2E-67 6.9E-72 591.0 58.9 499 34-546 369-915 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 2.4E-65 5.2E-70 573.9 48.1 432 6-449 120-562 (697)
6 PLN03218 maturation of RBCL 1; 100.0 2.3E-63 5E-68 559.7 56.8 491 6-505 367-908 (1060)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 3.7E-29 7.9E-34 293.5 58.9 493 34-542 362-868 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 6.6E-29 1.4E-33 291.3 60.2 491 34-541 328-833 (899)
9 PF14432 DYW_deaminase: DYW fa 100.0 1.7E-32 3.6E-37 227.2 8.8 106 547-670 2-116 (116)
10 PRK11447 cellulose synthase su 99.9 2.2E-20 4.8E-25 220.7 55.8 489 34-541 61-701 (1157)
11 PRK11447 cellulose synthase su 99.9 6.9E-20 1.5E-24 216.5 53.5 473 56-540 42-666 (1157)
12 PRK09782 bacteriophage N4 rece 99.9 1.6E-18 3.5E-23 195.7 53.3 469 53-541 55-707 (987)
13 KOG4626 O-linked N-acetylgluco 99.9 1.1E-18 2.4E-23 175.0 36.1 447 78-536 51-515 (966)
14 PRK11788 tetratricopeptide rep 99.9 3.3E-19 7.2E-24 187.8 30.5 302 81-416 41-354 (389)
15 PRK09782 bacteriophage N4 rece 99.8 3.6E-16 7.9E-21 176.9 53.3 489 34-542 77-742 (987)
16 KOG4626 O-linked N-acetylgluco 99.8 3.8E-18 8.1E-23 171.2 31.9 424 56-491 62-499 (966)
17 PRK11788 tetratricopeptide rep 99.8 1E-18 2.2E-23 184.1 29.9 292 156-451 46-354 (389)
18 TIGR00990 3a0801s09 mitochondr 99.8 2E-16 4.4E-21 175.7 45.4 410 56-476 141-568 (615)
19 TIGR00990 3a0801s09 mitochondr 99.8 2.6E-16 5.6E-21 174.8 44.0 413 115-540 132-571 (615)
20 PRK10049 pgaA outer membrane p 99.8 7E-16 1.5E-20 174.6 47.1 394 78-540 18-456 (765)
21 PRK15174 Vi polysaccharide exp 99.8 4E-16 8.7E-21 172.8 41.4 347 56-408 19-380 (656)
22 PRK15174 Vi polysaccharide exp 99.8 9.8E-16 2.1E-20 169.7 40.9 317 152-476 49-378 (656)
23 PRK10049 pgaA outer membrane p 99.8 7.1E-16 1.5E-20 174.5 39.5 407 34-483 14-461 (765)
24 PRK14574 hmsH outer membrane p 99.8 1.2E-14 2.6E-19 161.3 45.6 430 56-513 48-520 (822)
25 KOG2002 TPR-containing nuclear 99.7 1.3E-13 2.8E-18 146.5 44.6 476 58-542 146-677 (1018)
26 KOG4422 Uncharacterized conser 99.7 5.8E-14 1.3E-18 135.7 35.8 262 63-355 198-476 (625)
27 KOG2002 TPR-containing nuclear 99.7 8.7E-14 1.9E-18 147.7 39.5 490 34-542 229-800 (1018)
28 KOG4422 Uncharacterized conser 99.7 4E-13 8.6E-18 130.0 35.5 411 75-542 116-553 (625)
29 PRK14574 hmsH outer membrane p 99.7 2.3E-12 4.9E-17 143.4 41.6 417 120-541 44-514 (822)
30 KOG2076 RNA polymerase III tra 99.6 1.8E-11 4E-16 129.6 43.4 479 56-539 153-768 (895)
31 KOG0495 HAT repeat protein [RN 99.6 1.5E-09 3.3E-14 111.0 47.6 495 34-553 379-891 (913)
32 KOG2003 TPR repeat-containing 99.5 1.7E-11 3.7E-16 119.5 28.5 402 56-465 251-709 (840)
33 KOG0495 HAT repeat protein [RN 99.5 2.8E-09 6.2E-14 109.0 44.8 460 41-518 412-892 (913)
34 KOG2076 RNA polymerase III tra 99.5 3.1E-09 6.8E-14 113.0 43.5 500 34-540 206-849 (895)
35 TIGR00540 hemY_coli hemY prote 99.5 6E-11 1.3E-15 124.8 31.2 285 188-476 96-396 (409)
36 KOG2003 TPR repeat-containing 99.5 1.7E-10 3.8E-15 112.6 30.8 441 81-526 207-709 (840)
37 PRK10747 putative protoheme IX 99.5 1.2E-10 2.6E-15 121.8 31.6 248 222-476 129-387 (398)
38 KOG1155 Anaphase-promoting com 99.5 2.5E-10 5.4E-15 112.3 31.1 366 140-538 159-534 (559)
39 KOG0547 Translocase of outer m 99.5 5E-10 1.1E-14 110.9 33.0 211 325-539 339-565 (606)
40 KOG1155 Anaphase-promoting com 99.4 2.6E-09 5.7E-14 105.2 37.2 368 120-495 174-553 (559)
41 PRK10747 putative protoheme IX 99.4 9.4E-11 2E-15 122.6 28.1 284 88-407 97-388 (398)
42 PF13429 TPR_15: Tetratricopep 99.4 7.2E-13 1.6E-17 132.3 11.3 255 251-539 13-276 (280)
43 PF13429 TPR_15: Tetratricopep 99.4 8.7E-13 1.9E-17 131.7 11.6 255 80-338 13-274 (280)
44 TIGR00540 hemY_coli hemY prote 99.4 1.3E-09 2.7E-14 114.8 33.0 287 87-406 96-396 (409)
45 COG2956 Predicted N-acetylgluc 99.4 1.1E-09 2.4E-14 103.1 27.5 266 189-460 48-325 (389)
46 KOG1915 Cell cycle control pro 99.4 2.3E-08 4.9E-13 98.9 37.7 425 56-489 87-547 (677)
47 KOG1126 DNA-binding cell divis 99.4 7.8E-11 1.7E-15 121.2 21.7 273 261-541 334-621 (638)
48 KOG1915 Cell cycle control pro 99.3 1.5E-07 3.3E-12 93.1 41.2 456 74-538 72-583 (677)
49 KOG1126 DNA-binding cell divis 99.3 2.4E-10 5.2E-15 117.7 22.6 273 127-444 336-620 (638)
50 KOG4318 Bicoid mRNA stability 99.3 1.4E-09 3E-14 114.9 28.2 255 96-362 11-286 (1088)
51 KOG4318 Bicoid mRNA stability 99.3 5.5E-09 1.2E-13 110.5 32.5 510 2-550 17-603 (1088)
52 KOG0547 Translocase of outer m 99.3 2.9E-09 6.4E-14 105.5 28.7 218 254-476 334-563 (606)
53 COG2956 Predicted N-acetylgluc 99.3 2.1E-09 4.6E-14 101.2 25.9 297 78-410 39-348 (389)
54 PF13041 PPR_2: PPR repeat fam 99.3 9.4E-12 2E-16 87.3 6.6 50 378-427 1-50 (50)
55 COG3071 HemY Uncharacterized e 99.3 2.1E-08 4.5E-13 97.6 30.4 302 79-414 86-395 (400)
56 COG3071 HemY Uncharacterized e 99.2 2.4E-08 5.2E-13 97.2 29.9 281 189-476 97-387 (400)
57 KOG1156 N-terminal acetyltrans 99.2 3.3E-07 7.1E-12 94.5 39.1 422 36-476 9-465 (700)
58 PF13041 PPR_2: PPR repeat fam 99.2 1.4E-11 3.1E-16 86.4 5.2 50 73-122 1-50 (50)
59 KOG1173 Anaphase-promoting com 99.2 1.5E-07 3.3E-12 95.4 34.5 255 280-539 247-517 (611)
60 PRK12370 invasion protein regu 99.2 5.1E-09 1.1E-13 114.5 26.3 244 292-541 276-536 (553)
61 KOG2047 mRNA splicing factor [ 99.2 4.8E-06 1E-10 85.9 42.4 476 53-539 113-686 (835)
62 TIGR02521 type_IV_pilW type IV 99.1 1.5E-08 3.2E-13 98.1 23.5 156 317-476 70-229 (234)
63 TIGR02521 type_IV_pilW type IV 99.1 2.5E-08 5.5E-13 96.4 24.5 198 244-443 29-231 (234)
64 KOG1174 Anaphase-promoting com 99.1 1.8E-06 4E-11 84.3 36.0 299 208-511 191-505 (564)
65 KOG2376 Signal recognition par 99.1 1.2E-06 2.6E-11 89.6 36.0 430 82-536 19-516 (652)
66 KOG1173 Anaphase-promoting com 99.1 1E-07 2.3E-12 96.6 28.2 264 174-442 242-516 (611)
67 KOG2047 mRNA splicing factor [ 99.1 1.7E-05 3.6E-10 82.0 43.5 451 58-539 91-614 (835)
68 KOG3785 Uncharacterized conser 99.1 2E-07 4.3E-12 89.0 27.3 404 56-484 36-462 (557)
69 KOG3785 Uncharacterized conser 99.1 1.2E-06 2.5E-11 83.9 32.2 444 82-543 29-493 (557)
70 PRK12370 invasion protein regu 99.1 6.6E-08 1.4E-12 105.8 28.0 207 261-476 319-532 (553)
71 PRK11189 lipoprotein NlpI; Pro 99.1 2.7E-08 5.9E-13 99.6 22.5 210 327-541 41-266 (296)
72 KOG3616 Selective LIM binding 99.1 2.5E-06 5.4E-11 88.8 36.3 354 150-541 620-1025(1636)
73 KOG4162 Predicted calmodulin-b 99.0 6.7E-06 1.5E-10 86.8 38.0 396 140-541 318-784 (799)
74 KOG1840 Kinesin light chain [C 99.0 2.5E-07 5.4E-12 96.8 26.3 95 382-476 369-476 (508)
75 KOG1840 Kinesin light chain [C 99.0 4.4E-07 9.6E-12 94.9 27.2 225 314-538 201-477 (508)
76 KOG1129 TPR repeat-containing 99.0 3.7E-08 7.9E-13 92.9 17.2 229 281-540 227-458 (478)
77 KOG4162 Predicted calmodulin-b 98.9 2.8E-06 6E-11 89.6 30.5 423 34-476 322-780 (799)
78 KOG2376 Signal recognition par 98.9 2.8E-05 6.1E-10 79.8 35.6 43 56-98 26-69 (652)
79 KOG1129 TPR repeat-containing 98.9 1.1E-07 2.4E-12 89.7 16.8 233 245-481 222-461 (478)
80 PF12569 NARP1: NMDA receptor- 98.8 9.8E-06 2.1E-10 86.0 31.8 141 378-539 190-333 (517)
81 PF12569 NARP1: NMDA receptor- 98.8 4.1E-06 8.8E-11 88.9 28.4 284 153-476 12-331 (517)
82 KOG3617 WD40 and TPR repeat-co 98.8 4.4E-06 9.5E-11 88.2 27.6 385 34-477 725-1172(1416)
83 KOG1174 Anaphase-promoting com 98.8 3E-05 6.4E-10 76.1 31.3 263 175-444 231-500 (564)
84 COG3063 PilF Tfp pilus assembl 98.8 2.1E-06 4.6E-11 77.8 21.2 191 281-476 39-233 (250)
85 KOG1156 N-terminal acetyltrans 98.8 4.4E-05 9.5E-10 79.3 32.5 231 121-386 18-258 (700)
86 KOG1127 TPR repeat-containing 98.8 3.4E-05 7.4E-10 83.7 32.8 180 56-239 472-658 (1238)
87 KOG0548 Molecular co-chaperone 98.8 2.1E-05 4.6E-10 80.0 29.6 425 54-523 14-472 (539)
88 PRK11189 lipoprotein NlpI; Pro 98.7 3.3E-06 7.2E-11 84.6 23.7 56 250-305 68-126 (296)
89 PRK04841 transcriptional regul 98.7 0.0004 8.7E-09 81.9 42.7 368 153-541 349-761 (903)
90 cd05804 StaR_like StaR_like; a 98.7 7.8E-05 1.7E-09 77.4 32.6 296 178-476 8-333 (355)
91 cd05804 StaR_like StaR_like; a 98.7 5.6E-05 1.2E-09 78.4 31.5 193 75-304 6-213 (355)
92 KOG1914 mRNA cleavage and poly 98.7 0.00071 1.5E-08 69.1 37.0 129 34-172 19-164 (656)
93 PF04733 Coatomer_E: Coatomer 98.6 1.7E-06 3.8E-11 85.4 17.6 218 251-476 40-262 (290)
94 KOG3616 Selective LIM binding 98.6 0.00028 6.1E-09 74.0 33.6 36 502-537 1146-1181(1636)
95 KOG3617 WD40 and TPR repeat-co 98.6 0.00091 2E-08 71.4 37.6 205 34-273 756-994 (1416)
96 KOG1127 TPR repeat-containing 98.6 5.5E-05 1.2E-09 82.1 29.0 468 51-539 571-1103(1238)
97 KOG1125 TPR repeat-containing 98.6 8.7E-06 1.9E-10 83.4 21.9 248 222-474 296-566 (579)
98 KOG4340 Uncharacterized conser 98.6 4.9E-05 1.1E-09 71.4 24.8 293 224-540 125-443 (459)
99 COG3063 PilF Tfp pilus assembl 98.6 1.5E-05 3.3E-10 72.4 20.8 189 179-371 38-231 (250)
100 KOG0548 Molecular co-chaperone 98.6 1.9E-05 4.1E-10 80.3 23.4 214 315-541 227-456 (539)
101 PRK04841 transcriptional regul 98.5 0.00017 3.6E-09 85.1 32.4 322 155-476 384-757 (903)
102 PF12854 PPR_1: PPR repeat 98.5 2.4E-07 5.1E-12 58.3 4.4 33 241-273 2-34 (34)
103 PF04733 Coatomer_E: Coatomer 98.5 5.3E-06 1.1E-10 82.0 16.0 155 254-416 110-270 (290)
104 KOG0624 dsRNA-activated protei 98.5 0.00079 1.7E-08 64.8 29.4 92 147-240 40-135 (504)
105 PF12854 PPR_1: PPR repeat 98.5 2.7E-07 5.8E-12 58.0 4.3 32 445-476 2-33 (34)
106 KOG1914 mRNA cleavage and poly 98.5 0.0027 5.9E-08 65.0 35.0 398 72-476 16-498 (656)
107 KOG4340 Uncharacterized conser 98.5 0.00026 5.7E-09 66.7 25.5 180 56-243 24-210 (459)
108 KOG1125 TPR repeat-containing 98.4 5E-06 1.1E-10 85.1 15.3 214 323-539 296-526 (579)
109 KOG0985 Vesicle coat protein c 98.4 0.0061 1.3E-07 66.8 42.6 406 15-472 929-1376(1666)
110 KOG1128 Uncharacterized conser 98.4 1.3E-05 2.9E-10 84.2 17.6 218 242-476 394-613 (777)
111 KOG1128 Uncharacterized conser 98.4 1.4E-05 3E-10 84.0 17.1 229 181-460 403-633 (777)
112 TIGR03302 OM_YfiO outer membra 98.3 1.9E-05 4.2E-10 76.5 16.3 163 347-540 33-232 (235)
113 KOG0985 Vesicle coat protein c 98.3 0.0093 2E-07 65.5 38.1 42 82-124 845-886 (1666)
114 PLN02789 farnesyltranstransfer 98.3 0.00024 5.2E-09 71.2 22.5 181 355-538 79-300 (320)
115 KOG1070 rRNA processing protei 98.3 0.00032 7E-09 79.0 24.9 222 210-432 1457-1688(1710)
116 PRK10370 formate-dependent nit 98.2 0.0001 2.2E-09 68.8 17.5 148 354-541 23-174 (198)
117 TIGR03302 OM_YfiO outer membra 98.2 0.00011 2.3E-09 71.3 17.7 184 274-476 30-229 (235)
118 PRK15359 type III secretion sy 98.2 5.5E-05 1.2E-09 66.6 14.0 110 368-482 14-125 (144)
119 PLN02789 farnesyltranstransfer 98.2 0.00043 9.2E-09 69.5 21.6 199 56-258 51-267 (320)
120 KOG1070 rRNA processing protei 98.1 0.00038 8.3E-09 78.4 22.3 196 344-543 1455-1666(1710)
121 TIGR00756 PPR pentatricopeptid 98.1 4E-06 8.7E-11 53.5 4.5 35 381-415 1-35 (35)
122 COG5010 TadD Flp pilus assembl 98.1 0.00078 1.7E-08 62.9 20.8 157 316-476 70-228 (257)
123 KOG2053 Mitochondrial inherita 98.1 0.026 5.6E-07 61.7 36.8 128 56-188 23-156 (932)
124 PRK10370 formate-dependent nit 98.1 0.0003 6.6E-09 65.5 18.0 116 291-408 53-172 (198)
125 PRK14720 transcript cleavage f 98.1 0.0014 3.1E-08 73.3 25.5 150 311-493 115-268 (906)
126 TIGR00756 PPR pentatricopeptid 98.0 7.2E-06 1.6E-10 52.3 4.3 35 76-110 1-35 (35)
127 KOG0624 dsRNA-activated protei 98.0 0.0076 1.6E-07 58.3 25.9 318 77-444 40-370 (504)
128 COG4783 Putative Zn-dependent 98.0 0.0017 3.6E-08 66.0 22.2 202 261-485 252-462 (484)
129 COG5010 TadD Flp pilus assembl 98.0 0.00029 6.4E-09 65.6 15.7 146 56-203 80-229 (257)
130 PRK15359 type III secretion sy 98.0 0.00015 3.2E-09 63.9 13.4 68 346-415 57-125 (144)
131 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00027 5.8E-09 72.3 16.3 129 347-480 169-298 (395)
132 PF13812 PPR_3: Pentatricopept 98.0 1.3E-05 2.7E-10 50.7 4.3 33 381-413 2-34 (34)
133 PRK14720 transcript cleavage f 97.9 0.0023 5.1E-08 71.7 24.1 150 212-391 117-268 (906)
134 PRK15179 Vi polysaccharide bio 97.9 0.0011 2.5E-08 73.3 21.1 128 378-508 84-219 (694)
135 PF13812 PPR_3: Pentatricopept 97.9 1.7E-05 3.8E-10 50.1 4.1 34 75-108 1-34 (34)
136 PRK15179 Vi polysaccharide bio 97.9 0.0027 5.9E-08 70.4 23.5 142 276-421 85-228 (694)
137 COG4783 Putative Zn-dependent 97.9 0.003 6.4E-08 64.2 20.8 161 280-460 309-472 (484)
138 TIGR02552 LcrH_SycD type III s 97.8 0.00024 5.2E-09 62.0 11.8 109 402-540 5-114 (135)
139 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.00043 9.3E-09 70.9 13.8 121 78-203 172-295 (395)
140 TIGR02552 LcrH_SycD type III s 97.8 0.00078 1.7E-08 58.7 13.7 62 347-408 51-113 (135)
141 KOG3081 Vesicle coat complex C 97.7 0.017 3.6E-07 54.2 21.8 84 257-341 148-236 (299)
142 PF01535 PPR: PPR repeat; Int 97.7 4.6E-05 1E-09 46.9 3.6 31 381-411 1-31 (31)
143 PRK15363 pathogenicity island 97.7 0.0011 2.3E-08 57.8 12.9 108 455-585 40-154 (157)
144 PF09976 TPR_21: Tetratricopep 97.7 0.001 2.2E-08 58.8 13.1 123 350-475 15-143 (145)
145 KOG3081 Vesicle coat complex C 97.7 0.016 3.5E-07 54.3 20.7 109 355-466 145-257 (299)
146 KOG3060 Uncharacterized conser 97.6 0.043 9.3E-07 51.2 22.7 183 290-475 25-216 (289)
147 PF01535 PPR: PPR repeat; Int 97.6 6.6E-05 1.4E-09 46.2 3.3 31 76-106 1-31 (31)
148 PF09976 TPR_21: Tetratricopep 97.5 0.0055 1.2E-07 54.1 15.6 115 290-405 24-143 (145)
149 PF04840 Vps16_C: Vps16, C-ter 97.4 0.16 3.5E-06 51.0 26.7 108 249-372 180-287 (319)
150 TIGR02795 tol_pal_ybgF tol-pal 97.3 0.0039 8.4E-08 52.7 12.1 89 353-443 8-104 (119)
151 PF05843 Suf: Suppressor of fo 97.3 0.0072 1.6E-07 59.9 15.5 141 278-422 2-147 (280)
152 cd00189 TPR Tetratricopeptide 97.3 0.0028 6.2E-08 50.4 10.6 89 384-475 4-93 (100)
153 PF04840 Vps16_C: Vps16, C-ter 97.3 0.25 5.5E-06 49.6 29.4 111 349-477 179-289 (319)
154 PF12895 Apc3: Anaphase-promot 97.3 0.0006 1.3E-08 53.7 5.6 81 393-475 2-83 (84)
155 KOG2796 Uncharacterized conser 97.3 0.0081 1.7E-07 56.0 13.4 181 26-215 125-323 (366)
156 cd00189 TPR Tetratricopeptide 97.2 0.0051 1.1E-07 48.9 11.2 27 280-306 3-29 (100)
157 KOG2053 Mitochondrial inherita 97.2 0.52 1.1E-05 52.0 37.8 185 56-243 57-258 (932)
158 PF14938 SNAP: Soluble NSF att 97.2 0.28 6.1E-06 48.7 29.0 93 384-476 159-263 (282)
159 PF12895 Apc3: Anaphase-promot 97.2 0.001 2.3E-08 52.3 6.2 78 360-440 2-83 (84)
160 TIGR02795 tol_pal_ybgF tol-pal 97.1 0.01 2.2E-07 50.0 12.5 93 382-476 4-102 (119)
161 PF13431 TPR_17: Tetratricopep 97.1 0.00035 7.6E-09 43.8 2.3 33 500-532 2-34 (34)
162 KOG0553 TPR repeat-containing 97.1 0.006 1.3E-07 58.3 11.3 97 390-489 91-189 (304)
163 PLN03088 SGT1, suppressor of 97.1 0.0091 2E-07 61.4 13.6 101 389-492 11-113 (356)
164 PRK02603 photosystem I assembl 97.1 0.024 5.3E-07 51.6 15.1 130 380-526 35-166 (172)
165 PF08579 RPM2: Mitochondrial r 97.1 0.0055 1.2E-07 49.5 9.1 81 77-157 27-116 (120)
166 PF06239 ECSIT: Evolutionarily 97.0 0.0058 1.2E-07 55.8 10.1 100 367-466 34-154 (228)
167 PF08579 RPM2: Mitochondrial r 97.0 0.014 3E-07 47.2 10.9 79 384-462 29-116 (120)
168 PF10037 MRP-S27: Mitochondria 97.0 0.015 3.2E-07 60.1 14.2 122 307-428 61-186 (429)
169 COG4235 Cytochrome c biogenesi 97.0 0.0081 1.8E-07 57.8 11.4 96 447-542 153-258 (287)
170 CHL00033 ycf3 photosystem I as 97.0 0.033 7.2E-07 50.5 15.2 95 380-475 35-138 (168)
171 KOG1538 Uncharacterized conser 97.0 0.079 1.7E-06 55.7 18.8 232 113-408 601-845 (1081)
172 CHL00033 ycf3 photosystem I as 97.0 0.0078 1.7E-07 54.7 10.9 94 346-441 34-139 (168)
173 PRK15363 pathogenicity island 97.0 0.022 4.8E-07 49.6 12.6 92 351-444 39-132 (157)
174 KOG2041 WD40 repeat protein [G 96.9 0.77 1.7E-05 49.1 29.3 201 107-336 689-902 (1189)
175 PF05843 Suf: Suppressor of fo 96.9 0.011 2.3E-07 58.6 12.1 127 349-476 3-133 (280)
176 PF10037 MRP-S27: Mitochondria 96.9 0.018 3.8E-07 59.5 13.7 119 207-325 62-186 (429)
177 KOG3060 Uncharacterized conser 96.9 0.25 5.4E-06 46.3 19.4 183 328-514 28-228 (289)
178 PRK02603 photosystem I assembl 96.8 0.02 4.4E-07 52.2 12.3 91 74-165 34-126 (172)
179 PRK10153 DNA-binding transcrip 96.8 0.055 1.2E-06 58.3 17.1 63 380-444 420-482 (517)
180 PF14938 SNAP: Soluble NSF att 96.8 0.19 4.1E-06 50.0 20.0 194 261-495 30-248 (282)
181 COG5107 RNA14 Pre-mRNA 3'-end 96.8 0.74 1.6E-05 46.8 26.1 445 26-493 29-546 (660)
182 PLN03088 SGT1, suppressor of 96.8 0.02 4.3E-07 58.9 13.1 73 347-421 36-109 (356)
183 COG3898 Uncharacterized membra 96.8 0.71 1.5E-05 46.1 22.5 269 258-539 96-391 (531)
184 PRK10866 outer membrane biogen 96.7 0.47 1E-05 45.8 21.4 89 384-476 148-238 (243)
185 KOG0550 Molecular chaperone (D 96.7 0.053 1.1E-06 54.1 14.6 51 426-476 260-313 (486)
186 PF14559 TPR_19: Tetratricopep 96.7 0.0076 1.6E-07 45.0 7.2 61 427-488 3-64 (68)
187 KOG2280 Vacuolar assembly/sort 96.7 1.2 2.6E-05 48.3 25.7 108 351-475 688-795 (829)
188 PRK10866 outer membrane biogen 96.7 0.11 2.3E-06 50.3 16.8 65 56-120 46-114 (243)
189 KOG2796 Uncharacterized conser 96.7 0.087 1.9E-06 49.4 14.9 170 249-420 139-324 (366)
190 PF12688 TPR_5: Tetratrico pep 96.6 0.046 1E-06 45.9 11.9 90 386-475 7-100 (120)
191 PF07079 DUF1347: Protein of u 96.6 1 2.2E-05 46.0 39.5 425 35-487 46-530 (549)
192 PRK10153 DNA-binding transcrip 96.6 0.13 2.8E-06 55.5 18.1 121 363-485 358-489 (517)
193 PF13432 TPR_16: Tetratricopep 96.6 0.0082 1.8E-07 44.4 6.5 55 354-408 4-59 (65)
194 KOG0553 TPR repeat-containing 96.5 0.026 5.6E-07 54.1 10.8 95 325-422 94-189 (304)
195 PF06239 ECSIT: Evolutionarily 96.4 0.022 4.8E-07 52.1 9.0 99 61-159 33-152 (228)
196 PF12688 TPR_5: Tetratrico pep 96.4 0.1 2.2E-06 43.9 12.3 91 182-272 7-101 (120)
197 PF14559 TPR_19: Tetratricopep 96.3 0.018 3.8E-07 43.0 6.9 60 325-385 4-63 (68)
198 PF13414 TPR_11: TPR repeat; P 96.3 0.022 4.8E-07 42.6 7.3 63 379-443 2-66 (69)
199 COG4700 Uncharacterized protei 96.1 1 2.2E-05 40.2 17.7 100 309-408 86-188 (251)
200 PF13414 TPR_11: TPR repeat; P 95.9 0.017 3.6E-07 43.3 5.2 63 346-408 2-66 (69)
201 PF13432 TPR_16: Tetratricopep 95.9 0.014 3E-07 43.2 4.5 49 56-104 11-60 (65)
202 COG4235 Cytochrome c biogenesi 95.9 0.12 2.5E-06 50.0 11.6 96 109-205 155-256 (287)
203 PRK10803 tol-pal system protei 95.8 0.095 2.1E-06 51.1 11.0 92 383-476 146-243 (263)
204 KOG1130 Predicted G-alpha GTPa 95.8 0.16 3.5E-06 50.7 12.3 259 185-444 26-344 (639)
205 KOG0550 Molecular chaperone (D 95.6 1.9 4.1E-05 43.6 18.9 165 254-444 177-350 (486)
206 PF13525 YfiO: Outer membrane 95.6 2 4.3E-05 40.3 20.7 83 383-469 113-197 (203)
207 KOG2041 WD40 repeat protein [G 95.5 4.5 9.7E-05 43.7 27.8 200 56-277 677-909 (1189)
208 KOG3941 Intermediate in Toll s 95.5 0.12 2.5E-06 49.0 9.7 113 364-476 51-185 (406)
209 PRK10803 tol-pal system protei 95.4 0.14 3E-06 50.0 10.6 96 347-444 143-246 (263)
210 COG4785 NlpI Lipoprotein NlpI, 95.4 0.84 1.8E-05 41.8 14.4 176 360-541 78-267 (297)
211 PRK15331 chaperone protein Sic 95.4 0.16 3.5E-06 44.6 9.6 117 13-138 14-133 (165)
212 PF13281 DUF4071: Domain of un 95.3 2.8 6E-05 42.8 19.7 72 251-322 146-227 (374)
213 PF13525 YfiO: Outer membrane 95.2 0.18 4E-06 47.2 10.5 49 56-104 19-71 (203)
214 PF12921 ATP13: Mitochondrial 95.1 0.28 6E-06 41.7 10.2 49 445-493 47-99 (126)
215 KOG1130 Predicted G-alpha GTPa 95.1 0.088 1.9E-06 52.5 7.9 253 84-337 26-340 (639)
216 PF13371 TPR_9: Tetratricopept 95.1 0.093 2E-06 39.7 6.7 53 356-408 4-57 (73)
217 PF12921 ATP13: Mitochondrial 95.1 0.071 1.5E-06 45.3 6.5 96 347-460 2-98 (126)
218 PLN03098 LPA1 LOW PSII ACCUMUL 95.0 0.32 7E-06 50.1 12.0 66 344-409 72-141 (453)
219 PF03704 BTAD: Bacterial trans 95.0 0.081 1.8E-06 46.6 7.0 55 352-406 67-122 (146)
220 COG5107 RNA14 Pre-mRNA 3'-end 94.9 5.2 0.00011 41.0 30.3 429 63-510 30-535 (660)
221 KOG1538 Uncharacterized conser 94.9 0.72 1.6E-05 48.9 14.2 172 82-274 605-801 (1081)
222 PF03704 BTAD: Bacterial trans 94.8 0.32 7E-06 42.8 10.4 70 382-453 64-139 (146)
223 COG4700 Uncharacterized protei 94.8 2.9 6.4E-05 37.4 17.0 47 320-368 168-214 (251)
224 PLN03098 LPA1 LOW PSII ACCUMUL 94.8 0.27 5.9E-06 50.6 10.8 207 379-590 74-330 (453)
225 PF04053 Coatomer_WDAD: Coatom 94.7 1 2.2E-05 47.5 15.2 158 287-477 271-429 (443)
226 KOG1920 IkappaB kinase complex 94.5 5.2 0.00011 46.1 20.5 91 355-476 960-1052(1265)
227 COG3118 Thioredoxin domain-con 94.5 2.2 4.8E-05 41.3 15.3 117 424-541 143-266 (304)
228 PF13424 TPR_12: Tetratricopep 94.5 0.078 1.7E-06 40.8 5.0 59 417-475 7-71 (78)
229 PF13371 TPR_9: Tetratricopept 94.5 0.18 4E-06 38.0 7.0 55 388-444 3-58 (73)
230 COG3898 Uncharacterized membra 94.3 6.5 0.00014 39.6 27.2 266 209-485 116-398 (531)
231 PF13424 TPR_12: Tetratricopep 94.3 0.11 2.5E-06 39.8 5.5 63 381-443 6-74 (78)
232 PF10300 DUF3808: Protein of u 94.2 1.1 2.3E-05 48.1 14.4 117 360-477 246-374 (468)
233 smart00299 CLH Clathrin heavy 94.1 2.5 5.3E-05 36.8 14.3 122 353-493 13-136 (140)
234 PRK15331 chaperone protein Sic 94.0 0.61 1.3E-05 41.1 9.9 39 501-539 95-133 (165)
235 KOG2114 Vacuolar assembly/sort 93.7 11 0.00023 42.0 20.3 51 386-440 711-761 (933)
236 PF04053 Coatomer_WDAD: Coatom 93.7 3.2 7E-05 43.9 16.4 103 254-373 326-428 (443)
237 COG1729 Uncharacterized protei 93.6 0.73 1.6E-05 44.1 10.4 95 37-139 144-244 (262)
238 smart00299 CLH Clathrin heavy 93.6 4.1 8.8E-05 35.4 14.7 83 115-201 12-94 (140)
239 PF13281 DUF4071: Domain of un 93.5 8.1 0.00017 39.5 18.1 72 150-221 146-227 (374)
240 KOG3941 Intermediate in Toll s 93.2 0.43 9.3E-06 45.4 7.9 102 59-160 51-173 (406)
241 KOG0543 FKBP-type peptidyl-pro 93.1 1.2 2.6E-05 45.0 11.4 119 253-373 215-352 (397)
242 COG4105 ComL DNA uptake lipopr 93.1 6.5 0.00014 37.5 15.6 79 35-121 35-117 (254)
243 COG1729 Uncharacterized protei 92.7 0.84 1.8E-05 43.7 9.3 89 427-540 153-244 (262)
244 PF08631 SPO22: Meiosis protei 92.5 12 0.00026 37.1 25.6 158 315-474 87-270 (278)
245 KOG2280 Vacuolar assembly/sort 92.3 21 0.00045 39.4 28.0 114 413-537 682-796 (829)
246 PRK11906 transcriptional regul 92.3 3 6.4E-05 43.3 13.3 44 432-476 321-364 (458)
247 COG3118 Thioredoxin domain-con 92.3 1.7 3.8E-05 42.0 10.9 119 85-205 144-265 (304)
248 KOG0543 FKBP-type peptidyl-pro 92.1 2.7 5.8E-05 42.6 12.4 59 417-476 259-317 (397)
249 PF10602 RPN7: 26S proteasome 92.1 1.8 3.9E-05 39.4 10.5 93 382-476 38-139 (177)
250 KOG1258 mRNA processing protei 92.1 19 0.00042 38.5 32.3 143 34-184 44-190 (577)
251 KOG1585 Protein required for f 92.1 11 0.00023 35.6 15.4 44 249-304 94-137 (308)
252 PF10300 DUF3808: Protein of u 92.1 20 0.00043 38.5 24.1 158 179-339 191-374 (468)
253 KOG2066 Vacuolar assembly/sort 92.0 23 0.0005 39.2 27.2 321 122-495 368-703 (846)
254 COG0457 NrfG FOG: TPR repeat [ 91.9 11 0.00023 35.2 27.6 61 246-306 59-124 (291)
255 PF13170 DUF4003: Protein of u 91.7 5.6 0.00012 39.6 14.3 92 364-457 120-224 (297)
256 KOG4555 TPR repeat-containing 91.5 0.89 1.9E-05 38.0 6.9 89 51-140 52-145 (175)
257 KOG4648 Uncharacterized conser 91.4 0.87 1.9E-05 44.6 7.8 78 388-475 105-183 (536)
258 COG3629 DnrI DNA-binding trans 90.9 0.92 2E-05 44.1 7.6 78 35-119 153-236 (280)
259 PF13176 TPR_7: Tetratricopept 90.9 0.44 9.4E-06 30.1 3.7 26 513-538 1-26 (36)
260 PF04097 Nic96: Nup93/Nic96; 90.6 32 0.0007 38.4 24.3 70 75-146 112-188 (613)
261 KOG2610 Uncharacterized conser 90.6 3.7 8E-05 40.3 11.1 152 87-239 115-275 (491)
262 KOG1585 Protein required for f 90.5 16 0.00034 34.5 16.4 25 280-304 34-58 (308)
263 PF09613 HrpB1_HrpK: Bacterial 90.1 5.1 0.00011 35.3 10.8 121 37-166 9-130 (160)
264 COG3629 DnrI DNA-binding trans 90.0 2.3 5E-05 41.4 9.5 78 347-424 153-236 (280)
265 KOG2610 Uncharacterized conser 89.8 3.3 7.1E-05 40.7 10.1 154 392-548 115-284 (491)
266 PF09205 DUF1955: Domain of un 89.8 11 0.00025 31.8 13.1 63 280-343 89-151 (161)
267 PF13512 TPR_18: Tetratricopep 89.7 4.4 9.4E-05 35.0 9.9 67 56-122 24-94 (142)
268 KOG1258 mRNA processing protei 89.7 33 0.00071 36.9 31.2 406 74-526 44-490 (577)
269 PF07035 Mic1: Colon cancer-as 89.5 15 0.00033 32.8 13.6 133 196-340 14-148 (167)
270 KOG1941 Acetylcholine receptor 89.1 21 0.00045 35.8 15.0 164 279-442 85-273 (518)
271 PRK11906 transcriptional regul 89.0 24 0.00053 36.9 16.3 110 363-475 320-432 (458)
272 PF04184 ST7: ST7 protein; In 88.7 33 0.00072 36.1 16.9 57 385-442 264-322 (539)
273 PF09205 DUF1955: Domain of un 88.6 14 0.0003 31.3 14.4 83 360-446 69-151 (161)
274 KOG2114 Vacuolar assembly/sort 88.6 47 0.001 37.3 22.3 109 85-200 378-487 (933)
275 KOG4555 TPR repeat-containing 88.6 4.9 0.00011 33.7 8.9 90 356-445 52-145 (175)
276 COG1747 Uncharacterized N-term 88.3 37 0.0008 35.8 16.9 194 37-254 44-247 (711)
277 PF00515 TPR_1: Tetratricopept 88.2 1.1 2.4E-05 27.6 4.1 32 381-414 2-33 (34)
278 PF07079 DUF1347: Protein of u 88.2 35 0.00077 35.4 36.4 37 501-538 486-522 (549)
279 PRK09687 putative lyase; Provi 88.1 29 0.00063 34.3 26.0 76 344-426 203-278 (280)
280 KOG1941 Acetylcholine receptor 88.0 19 0.0004 36.1 13.9 24 514-537 249-272 (518)
281 KOG1920 IkappaB kinase complex 88.0 61 0.0013 38.0 25.1 91 254-373 960-1052(1265)
282 PF13428 TPR_14: Tetratricopep 87.9 0.59 1.3E-05 31.1 2.8 27 78-104 4-30 (44)
283 KOG4570 Uncharacterized conser 87.6 4.9 0.00011 39.2 9.6 100 341-444 58-164 (418)
284 PF10345 Cohesin_load: Cohesin 87.6 53 0.0011 36.8 35.8 192 34-237 29-251 (608)
285 PF13428 TPR_14: Tetratricopep 87.3 1.7 3.6E-05 28.9 4.8 27 382-408 3-29 (44)
286 PF08631 SPO22: Meiosis protei 87.2 33 0.00071 33.9 24.7 101 348-450 85-192 (278)
287 PF13512 TPR_18: Tetratricopep 87.2 14 0.00031 31.9 11.3 52 425-476 20-73 (142)
288 PF13170 DUF4003: Protein of u 87.2 15 0.00032 36.6 13.3 61 294-354 160-224 (297)
289 PF07035 Mic1: Colon cancer-as 87.1 16 0.00036 32.6 12.2 132 96-239 15-148 (167)
290 COG0457 NrfG FOG: TPR repeat [ 86.9 26 0.00056 32.5 27.1 164 277-443 59-230 (291)
291 COG4649 Uncharacterized protei 86.3 10 0.00022 33.7 10.0 18 288-305 105-122 (221)
292 COG4105 ComL DNA uptake lipopr 86.1 33 0.00071 32.9 20.7 56 421-476 173-230 (254)
293 PRK09687 putative lyase; Provi 85.9 38 0.00083 33.5 27.6 236 243-492 34-277 (280)
294 PF13176 TPR_7: Tetratricopept 85.8 1.8 4E-05 27.2 4.1 25 383-407 2-26 (36)
295 KOG1586 Protein required for f 85.4 33 0.00072 32.3 17.1 53 461-513 165-231 (288)
296 PF07719 TPR_2: Tetratricopept 83.8 1.6 3.5E-05 26.7 3.2 28 512-539 2-29 (34)
297 PF07719 TPR_2: Tetratricopept 83.6 2.6 5.6E-05 25.7 4.1 27 382-408 3-29 (34)
298 COG4785 NlpI Lipoprotein NlpI, 83.5 38 0.00083 31.5 14.2 124 56-186 79-208 (297)
299 TIGR02508 type_III_yscG type I 83.5 19 0.00041 28.8 9.3 61 253-316 46-106 (115)
300 PF09613 HrpB1_HrpK: Bacterial 83.1 32 0.0007 30.4 13.0 48 359-408 22-72 (160)
301 PF04184 ST7: ST7 protein; In 82.8 69 0.0015 33.9 18.1 58 351-408 263-323 (539)
302 PF07721 TPR_4: Tetratricopept 82.5 1.7 3.7E-05 25.0 2.7 24 512-535 2-25 (26)
303 KOG4234 TPR repeat-containing 82.1 7.7 0.00017 35.3 7.7 47 496-542 153-199 (271)
304 PF10602 RPN7: 26S proteasome 82.0 26 0.00056 31.9 11.5 57 248-304 38-100 (177)
305 PF13431 TPR_17: Tetratricopep 81.6 0.81 1.8E-05 28.5 1.1 28 68-95 5-33 (34)
306 KOG1464 COP9 signalosome, subu 80.7 55 0.0012 31.4 17.2 241 261-508 42-330 (440)
307 PF00515 TPR_1: Tetratricopept 80.5 2.6 5.5E-05 25.9 3.2 29 512-540 2-30 (34)
308 PF13374 TPR_10: Tetratricopep 80.0 3.1 6.8E-05 26.8 3.7 28 512-539 3-30 (42)
309 KOG0276 Vesicle coat complex C 79.7 26 0.00057 37.6 11.7 99 359-476 649-747 (794)
310 KOG2066 Vacuolar assembly/sort 79.5 1.1E+02 0.0024 34.2 22.8 48 56-103 370-420 (846)
311 TIGR02508 type_III_yscG type I 78.8 32 0.00069 27.6 9.5 86 328-419 21-106 (115)
312 PF13174 TPR_6: Tetratricopept 78.7 2.7 5.7E-05 25.4 2.9 28 513-540 2-29 (33)
313 PF14853 Fis1_TPR_C: Fis1 C-te 78.5 13 0.00029 25.8 6.5 27 513-539 3-29 (53)
314 TIGR02561 HrpB1_HrpK type III 78.4 12 0.00026 32.5 7.4 39 504-542 37-75 (153)
315 PF00637 Clathrin: Region in C 78.4 2.4 5.2E-05 37.0 3.6 71 56-133 21-93 (143)
316 PF13181 TPR_8: Tetratricopept 78.4 4.5 9.6E-05 24.7 3.9 28 512-539 2-29 (34)
317 KOG3807 Predicted membrane pro 78.3 74 0.0016 31.5 13.7 19 496-514 381-399 (556)
318 PF00637 Clathrin: Region in C 77.5 1.2 2.7E-05 38.8 1.4 84 116-202 13-96 (143)
319 cd00923 Cyt_c_Oxidase_Va Cytoc 77.4 17 0.00037 28.8 7.3 62 395-458 22-84 (103)
320 PRK11619 lytic murein transgly 76.9 1.3E+02 0.0029 33.7 29.3 59 348-406 313-372 (644)
321 PF02284 COX5A: Cytochrome c o 76.3 14 0.00031 29.6 6.7 59 398-458 28-87 (108)
322 PF13181 TPR_8: Tetratricopept 75.8 4.6 0.0001 24.6 3.4 27 382-408 3-29 (34)
323 PF11207 DUF2989: Protein of u 75.5 23 0.00049 32.6 8.8 73 397-470 123-198 (203)
324 PF13374 TPR_10: Tetratricopep 75.5 6.7 0.00015 25.1 4.3 28 381-408 3-30 (42)
325 KOG0276 Vesicle coat complex C 75.3 36 0.00079 36.6 11.3 150 258-441 598-747 (794)
326 KOG4570 Uncharacterized conser 74.9 32 0.00069 33.9 10.0 100 241-341 59-164 (418)
327 PF11207 DUF2989: Protein of u 73.6 23 0.00049 32.6 8.4 73 294-367 123-198 (203)
328 PF04097 Nic96: Nup93/Nic96; 73.6 1.6E+02 0.0034 33.0 18.9 88 389-481 267-358 (613)
329 KOG0890 Protein kinase of the 72.9 2.9E+02 0.0062 35.6 28.2 57 417-476 1672-1728(2382)
330 PF09477 Type_III_YscG: Bacter 72.0 52 0.0011 26.8 9.5 87 225-315 20-106 (116)
331 cd00923 Cyt_c_Oxidase_Va Cytoc 70.6 26 0.00055 27.9 6.8 59 93-153 25-84 (103)
332 COG3947 Response regulator con 70.4 1.1E+02 0.0024 29.9 14.0 53 387-441 286-339 (361)
333 PF07575 Nucleopor_Nup85: Nup8 70.4 1.8E+02 0.0039 32.2 17.6 26 75-101 149-174 (566)
334 PF14561 TPR_20: Tetratricopep 70.2 10 0.00022 29.9 4.9 45 497-541 8-52 (90)
335 PF02259 FAT: FAT domain; Int 70.1 1.3E+02 0.0028 30.6 17.8 174 56-240 12-213 (352)
336 PF02259 FAT: FAT domain; Int 70.1 1.3E+02 0.0028 30.6 21.9 65 379-443 145-212 (352)
337 TIGR02561 HrpB1_HrpK type III 70.0 75 0.0016 27.7 12.0 16 358-373 55-70 (153)
338 COG4649 Uncharacterized protei 69.1 87 0.0019 28.1 14.2 88 357-444 104-196 (221)
339 PF13762 MNE1: Mitochondrial s 67.9 61 0.0013 28.2 9.3 79 383-463 42-128 (145)
340 KOG4648 Uncharacterized conser 65.6 17 0.00037 36.0 6.2 44 255-298 106-152 (536)
341 PF02284 COX5A: Cytochrome c o 65.5 30 0.00065 27.8 6.4 60 93-153 28-87 (108)
342 PHA02875 ankyrin repeat protei 65.4 1.8E+02 0.004 30.5 17.1 21 253-273 172-192 (413)
343 PF06552 TOM20_plant: Plant sp 65.3 91 0.002 28.2 10.1 29 398-428 53-82 (186)
344 PF04190 DUF410: Protein of un 64.3 1.5E+02 0.0032 29.0 16.9 49 244-292 88-136 (260)
345 PF09477 Type_III_YscG: Bacter 63.7 80 0.0017 25.7 9.0 79 327-410 21-99 (116)
346 KOG4234 TPR repeat-containing 62.5 52 0.0011 30.2 8.1 84 390-476 105-194 (271)
347 KOG0686 COP9 signalosome, subu 60.7 2.1E+02 0.0045 29.6 14.0 62 347-408 150-215 (466)
348 COG2976 Uncharacterized protei 60.2 1.4E+02 0.0031 27.4 12.8 125 77-206 56-189 (207)
349 PF07163 Pex26: Pex26 protein; 60.1 99 0.0021 30.1 9.9 88 387-476 90-184 (309)
350 TIGR03504 FimV_Cterm FimV C-te 58.8 16 0.00034 24.3 3.3 27 515-541 3-29 (44)
351 KOG1586 Protein required for f 57.8 1.7E+02 0.0038 27.7 14.4 26 425-450 164-189 (288)
352 COG3947 Response regulator con 57.7 2E+02 0.0043 28.3 13.2 59 417-476 281-339 (361)
353 smart00028 TPR Tetratricopepti 56.1 19 0.00042 20.4 3.4 26 383-408 4-29 (34)
354 PF10579 Rapsyn_N: Rapsyn N-te 55.8 28 0.00061 26.5 4.5 46 427-472 18-65 (80)
355 PF08424 NRDE-2: NRDE-2, neces 55.5 2.3E+02 0.005 28.7 12.8 89 66-156 9-110 (321)
356 PF11846 DUF3366: Domain of un 55.3 38 0.00083 31.2 6.6 32 445-476 139-170 (193)
357 PF13762 MNE1: Mitochondrial s 55.2 1.2E+02 0.0026 26.4 9.0 50 175-224 78-128 (145)
358 KOG1464 COP9 signalosome, subu 54.9 2.1E+02 0.0045 27.7 16.2 146 159-304 41-218 (440)
359 PF13934 ELYS: Nuclear pore co 54.4 1.6E+02 0.0035 27.9 10.8 20 386-405 114-133 (226)
360 PF10366 Vps39_1: Vacuolar sor 53.8 1E+02 0.0022 25.3 8.1 27 382-408 41-67 (108)
361 PHA02875 ankyrin repeat protei 53.6 2.9E+02 0.0063 29.0 16.0 77 187-271 10-90 (413)
362 PF10579 Rapsyn_N: Rapsyn N-te 53.0 47 0.001 25.3 5.3 47 392-438 18-66 (80)
363 KOG0403 Neoplastic transformat 52.8 3E+02 0.0064 28.9 20.1 73 351-427 513-586 (645)
364 PF11663 Toxin_YhaV: Toxin wit 52.7 19 0.00042 30.5 3.6 31 88-120 108-138 (140)
365 PF10366 Vps39_1: Vacuolar sor 52.5 1.1E+02 0.0024 25.1 8.1 27 279-305 41-67 (108)
366 COG4455 ImpE Protein of avirul 51.8 99 0.0021 29.0 8.2 74 384-459 5-81 (273)
367 TIGR03504 FimV_Cterm FimV C-te 51.4 36 0.00078 22.7 4.1 20 388-407 7-26 (44)
368 PRK11619 lytic murein transgly 50.9 4.1E+02 0.0089 30.0 32.5 52 286-338 321-372 (644)
369 KOG0686 COP9 signalosome, subu 49.6 3.2E+02 0.0069 28.3 13.9 24 315-338 153-176 (466)
370 PRK13342 recombination factor 49.3 3.4E+02 0.0074 28.6 18.4 101 208-326 173-279 (413)
371 PF13929 mRNA_stabil: mRNA sta 48.7 2.8E+02 0.006 27.4 20.6 111 191-301 143-262 (292)
372 COG4455 ImpE Protein of avirul 48.2 2.4E+02 0.0052 26.5 12.0 120 417-542 3-136 (273)
373 KOG4642 Chaperone-dependent E3 47.9 1.8E+02 0.0039 27.7 9.3 116 359-476 22-143 (284)
374 PF07163 Pex26: Pex26 protein; 46.4 1.9E+02 0.0041 28.3 9.5 85 183-269 90-181 (309)
375 COG5108 RPO41 Mitochondrial DN 46.3 78 0.0017 34.6 7.6 71 385-458 33-111 (1117)
376 COG5159 RPN6 26S proteasome re 46.1 3E+02 0.0065 27.0 14.3 133 389-538 12-152 (421)
377 COG2976 Uncharacterized protei 46.0 2.4E+02 0.0053 26.0 14.7 89 219-307 97-189 (207)
378 PF13934 ELYS: Nuclear pore co 45.1 2.6E+02 0.0056 26.6 10.5 71 352-426 113-183 (226)
379 KOG0376 Serine-threonine phosp 45.0 69 0.0015 33.6 6.9 111 391-505 15-129 (476)
380 PF14853 Fis1_TPR_C: Fis1 C-te 43.6 81 0.0017 22.0 5.0 34 386-421 7-40 (53)
381 KOG2471 TPR repeat-containing 42.7 4.5E+02 0.0097 28.0 15.1 97 498-598 227-330 (696)
382 cd08819 CARD_MDA5_2 Caspase ac 42.2 1.4E+02 0.003 23.4 6.5 65 129-195 21-85 (88)
383 KOG4642 Chaperone-dependent E3 41.7 71 0.0015 30.3 5.8 44 496-539 63-106 (284)
384 PF06552 TOM20_plant: Plant sp 41.6 2.7E+02 0.0059 25.3 13.0 42 396-445 96-137 (186)
385 PF13929 mRNA_stabil: mRNA sta 40.8 3.7E+02 0.008 26.5 15.5 58 344-401 199-259 (292)
386 PF14689 SPOB_a: Sensor_kinase 40.7 66 0.0014 23.2 4.5 25 418-442 26-50 (62)
387 KOG4077 Cytochrome c oxidase, 40.7 1.4E+02 0.0031 25.2 6.7 58 398-457 67-125 (149)
388 KOG1308 Hsp70-interacting prot 40.2 24 0.00052 35.2 2.7 51 496-546 167-217 (377)
389 PF14689 SPOB_a: Sensor_kinase 39.9 26 0.00056 25.4 2.2 30 379-408 22-51 (62)
390 TIGR02710 CRISPR-associated pr 39.6 4.5E+02 0.0098 27.2 12.4 26 390-415 140-165 (380)
391 KOG2300 Uncharacterized conser 39.2 5.1E+02 0.011 27.7 18.2 211 162-372 299-552 (629)
392 KOG2034 Vacuolar sorting prote 39.1 6.6E+02 0.014 29.0 26.8 145 149-303 393-556 (911)
393 PF11848 DUF3368: Domain of un 38.6 1.1E+02 0.0025 20.7 5.1 29 393-421 15-43 (48)
394 PF08311 Mad3_BUB1_I: Mad3/BUB 38.3 2.5E+02 0.0054 23.8 8.6 43 398-440 81-124 (126)
395 PF04910 Tcf25: Transcriptiona 37.8 4.7E+02 0.01 26.9 18.2 118 344-476 37-165 (360)
396 PRK10564 maltose regulon perip 37.6 64 0.0014 31.8 5.1 46 377-422 253-299 (303)
397 PRK10564 maltose regulon perip 37.3 61 0.0013 32.0 4.9 39 279-317 259-297 (303)
398 PF11663 Toxin_YhaV: Toxin wit 37.3 37 0.0008 28.9 3.0 32 288-321 106-137 (140)
399 KOG2659 LisH motif-containing 37.2 2.4E+02 0.0053 26.6 8.5 95 379-475 25-128 (228)
400 PRK13342 recombination factor 36.6 5.3E+02 0.011 27.2 18.5 47 383-429 230-279 (413)
401 PF11848 DUF3368: Domain of un 36.2 1.1E+02 0.0023 20.8 4.7 35 424-458 11-45 (48)
402 PF11817 Foie-gras_1: Foie gra 35.7 1.7E+02 0.0037 28.2 8.0 56 385-440 183-243 (247)
403 KOG2908 26S proteasome regulat 35.6 4.2E+02 0.0092 26.7 10.2 84 386-469 81-176 (380)
404 KOG1550 Extracellular protein 35.2 6.5E+02 0.014 27.8 23.4 52 86-140 260-323 (552)
405 PHA03100 ankyrin repeat protei 34.8 6E+02 0.013 27.2 14.7 15 157-171 117-131 (480)
406 PF08225 Antimicrobial19: Pseu 34.4 28 0.0006 18.6 1.1 13 640-652 9-21 (23)
407 PF11838 ERAP1_C: ERAP1-like C 34.3 4.9E+02 0.011 26.0 14.5 31 56-86 54-84 (324)
408 KOG0545 Aryl-hydrocarbon recep 33.6 2.6E+02 0.0057 26.8 8.1 42 498-539 251-292 (329)
409 KOG4507 Uncharacterized conser 33.3 2.1E+02 0.0046 31.0 8.3 127 58-187 589-721 (886)
410 COG5187 RPN7 26S proteasome re 33.3 4.8E+02 0.01 25.7 11.5 94 380-475 115-217 (412)
411 cd08819 CARD_MDA5_2 Caspase ac 33.2 2.4E+02 0.0052 22.1 6.9 39 359-400 48-86 (88)
412 PF11846 DUF3366: Domain of un 33.0 84 0.0018 28.9 5.1 33 376-408 140-172 (193)
413 PRK10941 hypothetical protein; 32.9 3.7E+02 0.0079 26.4 9.6 73 383-457 184-258 (269)
414 PF10475 DUF2450: Protein of u 32.8 3.3E+02 0.0072 27.0 9.6 52 252-305 104-155 (291)
415 smart00386 HAT HAT (Half-A-TPR 32.8 35 0.00075 20.0 1.8 27 56-82 1-28 (33)
416 KOG4507 Uncharacterized conser 32.7 1.2E+02 0.0026 32.8 6.4 122 265-387 592-717 (886)
417 KOG2063 Vacuolar assembly/sort 32.4 8.7E+02 0.019 28.4 14.9 250 179-436 507-790 (877)
418 KOG0991 Replication factor C, 32.3 4.6E+02 0.0099 25.1 11.9 56 265-322 227-282 (333)
419 PF04190 DUF410: Protein of un 31.6 5E+02 0.011 25.3 20.1 159 258-444 2-170 (260)
420 KOG1308 Hsp70-interacting prot 31.2 53 0.0011 32.9 3.5 90 56-147 128-219 (377)
421 PF15161 Neuropep_like: Neurop 30.4 32 0.00069 23.8 1.3 17 635-652 11-27 (65)
422 COG0735 Fur Fe2+/Zn2+ uptake r 29.1 2.9E+02 0.0062 24.1 7.5 45 178-222 22-66 (145)
423 PF09670 Cas_Cas02710: CRISPR- 28.7 6.8E+02 0.015 26.0 11.9 55 185-240 140-198 (379)
424 KOG4077 Cytochrome c oxidase, 28.7 2.5E+02 0.0055 23.8 6.4 58 94-152 68-125 (149)
425 KOG3364 Membrane protein invol 28.7 1.3E+02 0.0028 25.8 4.8 14 327-340 50-63 (149)
426 PF07575 Nucleopor_Nup85: Nup8 28.5 6.9E+02 0.015 27.7 12.1 61 311-373 404-464 (566)
427 PF09454 Vps23_core: Vps23 cor 28.5 1.2E+02 0.0026 22.3 4.1 49 413-462 6-54 (65)
428 KOG2908 26S proteasome regulat 28.1 3.3E+02 0.0072 27.4 8.2 32 385-416 120-156 (380)
429 PF02847 MA3: MA3 domain; Int 27.8 2.2E+02 0.0047 23.2 6.4 19 284-302 9-27 (113)
430 KOG1550 Extracellular protein 27.5 8.7E+02 0.019 26.8 24.4 176 161-342 228-427 (552)
431 PF14669 Asp_Glu_race_2: Putat 27.3 5E+02 0.011 24.0 13.6 58 419-476 136-207 (233)
432 PF11768 DUF3312: Protein of u 27.1 4.9E+02 0.011 28.2 9.8 57 250-306 412-473 (545)
433 PRK13341 recombination factor 27.1 1E+03 0.022 27.4 16.4 125 206-344 192-330 (725)
434 PF11768 DUF3312: Protein of u 26.7 3.9E+02 0.0085 29.0 9.0 56 149-204 412-472 (545)
435 PRK11639 zinc uptake transcrip 26.6 2.8E+02 0.0062 24.9 7.2 49 177-225 26-74 (169)
436 PF10255 Paf67: RNA polymerase 26.5 3.5E+02 0.0077 28.3 8.6 105 414-537 74-190 (404)
437 KOG0991 Replication factor C, 26.5 5.8E+02 0.013 24.4 11.5 48 366-416 227-274 (333)
438 PF11838 ERAP1_C: ERAP1-like C 26.5 6.6E+02 0.014 25.1 19.1 26 262-287 56-83 (324)
439 COG5159 RPN6 26S proteasome re 26.4 6.3E+02 0.014 24.9 18.4 134 182-315 9-167 (421)
440 COG1747 Uncharacterized N-term 26.4 8.4E+02 0.018 26.3 23.3 59 246-305 66-126 (711)
441 PRK11639 zinc uptake transcrip 26.3 2.9E+02 0.0063 24.8 7.2 45 79-123 29-73 (169)
442 PF08967 DUF1884: Domain of un 26.3 76 0.0017 24.2 2.8 26 570-595 7-32 (85)
443 COG0735 Fur Fe2+/Zn2+ uptake r 26.3 3.4E+02 0.0073 23.7 7.4 45 282-326 25-69 (145)
444 PRK13800 putative oxidoreducta 25.9 1.2E+03 0.025 27.8 27.9 255 165-443 624-880 (897)
445 KOG4567 GTPase-activating prot 25.6 6.9E+02 0.015 25.0 9.7 78 400-477 263-345 (370)
446 cd08326 CARD_CASP9 Caspase act 25.2 2.3E+02 0.005 22.0 5.4 59 131-193 20-78 (84)
447 KOG3364 Membrane protein invol 25.1 4.5E+02 0.0098 22.7 8.9 65 412-476 29-97 (149)
448 COG2909 MalT ATP-dependent tra 24.9 1.1E+03 0.025 27.3 27.8 186 121-306 426-647 (894)
449 PF09670 Cas_Cas02710: CRISPR- 24.6 8.1E+02 0.017 25.5 13.0 51 392-443 143-197 (379)
450 KOG4567 GTPase-activating prot 24.4 7.2E+02 0.016 24.8 10.4 41 97-137 265-305 (370)
451 PRK15180 Vi polysaccharide bio 24.1 8.9E+02 0.019 25.8 26.4 79 463-541 711-806 (831)
452 PF04910 Tcf25: Transcriptiona 23.7 8.2E+02 0.018 25.2 14.0 52 321-372 112-164 (360)
453 COG0790 FOG: TPR repeat, SEL1 23.3 7.1E+02 0.015 24.4 18.1 205 122-329 53-289 (292)
454 cd07229 Pat_TGL3_like Triacylg 23.2 3.5E+02 0.0075 28.2 7.8 59 437-495 173-250 (391)
455 cd00280 TRFH Telomeric Repeat 23.1 2.7E+02 0.0058 25.4 6.0 19 84-102 120-138 (200)
456 PF02847 MA3: MA3 domain; Int 23.1 2E+02 0.0044 23.5 5.3 21 386-406 8-28 (113)
457 COG5108 RPO41 Mitochondrial DN 23.1 6.4E+02 0.014 28.0 9.7 24 216-239 33-56 (1117)
458 KOG2223 Uncharacterized conser 23.0 4.6E+02 0.0099 27.4 8.3 106 436-541 460-577 (586)
459 PF10475 DUF2450: Protein of u 22.9 5.5E+02 0.012 25.5 9.2 112 353-473 104-220 (291)
460 PF07720 TPR_3: Tetratricopept 22.7 1.1E+02 0.0024 19.2 2.7 23 513-535 3-25 (36)
461 PRK10941 hypothetical protein; 22.6 7E+02 0.015 24.5 9.5 74 418-492 184-261 (269)
462 PF09986 DUF2225: Uncharacteri 22.3 4.6E+02 0.01 24.7 8.0 30 512-541 166-195 (214)
463 KOG2396 HAT (Half-A-TPR) repea 22.2 1E+03 0.022 25.7 32.9 64 34-104 104-169 (568)
464 PF11817 Foie-gras_1: Foie gra 22.1 3E+02 0.0066 26.5 7.0 54 420-473 183-241 (247)
465 PF11123 DNA_Packaging_2: DNA 22.1 2.1E+02 0.0046 21.5 4.2 62 362-444 12-74 (82)
466 PF12862 Apc5: Anaphase-promot 21.9 3.6E+02 0.0079 21.2 6.3 51 425-475 8-66 (94)
467 KOG4334 Uncharacterized conser 21.8 46 0.00099 34.6 1.2 146 104-258 409-572 (650)
468 PF05476 PET122: PET122; Inte 21.7 5.9E+02 0.013 24.6 8.2 79 56-134 24-104 (267)
469 PF07443 HARP: HepA-related pr 21.7 58 0.0013 22.9 1.3 31 56-86 6-38 (55)
470 cd00280 TRFH Telomeric Repeat 21.0 6.2E+02 0.014 23.2 7.9 22 422-443 118-139 (200)
471 PHA03100 ankyrin repeat protei 20.8 1E+03 0.022 25.3 13.7 16 527-542 364-379 (480)
472 KOG3677 RNA polymerase I-assoc 20.8 6.2E+02 0.013 26.4 8.7 61 313-373 236-298 (525)
473 KOG0292 Vesicle coat complex C 20.5 1.1E+03 0.023 27.5 11.0 159 230-412 623-785 (1202)
474 PF11525 CopK: Copper resistan 20.2 39 0.00086 24.7 0.3 21 656-676 8-28 (73)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.7e-131 Score=1134.90 Aligned_cols=664 Identities=38% Similarity=0.710 Sum_probs=650.7
Q ss_pred CCcCC-CCCcchHHHHHHhccccccH---HHHHHHhh------hhhhHHHHHHhhhhhhhcccCCCChHHHHHHhhhccC
Q 037256 1 MRRLG-PSTEGFYDQLLKSCNFLASL---RQIHSSLT------TSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHN 70 (680)
Q Consensus 1 ~~~~~-~~~~~~~~~~l~~~~~~~~~---~~~h~~~~------~~~~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~ 70 (680)
|.+.| .||.+||+++|++|+..+++ +++|..+. |++++|+||++|.+ + |++++|.++|++|+.
T Consensus 178 M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k-~------g~~~~A~~lf~~m~~ 250 (857)
T PLN03077 178 MLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVK-C------GDVVSARLVFDRMPR 250 (857)
T ss_pred HHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhc-C------CCHHHHHHHHhcCCC
Confidence 45678 79999999999999998887 89999987 99999999999999 9 999999999999998
Q ss_pred CCCCcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHH
Q 037256 71 DKSYSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAA 150 (680)
Q Consensus 71 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 150 (680)
+ |+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|+++|..+.+.|+.||..+||+
T Consensus 251 ~--d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~ 328 (857)
T PLN03077 251 R--DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNS 328 (857)
T ss_pred C--CcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHH
Confidence 7 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHH
Q 037256 151 LVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKA 230 (680)
Q Consensus 151 Li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 230 (680)
|+.+|+++|++++|.++|++|..||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|
T Consensus 329 Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a 408 (857)
T PLN03077 329 LIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVG 408 (857)
T ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC
Q 037256 231 QAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKP 310 (680)
Q Consensus 231 ~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 310 (680)
.++|+.+.+.|+.|+..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+.+|++|.. +++|
T Consensus 409 ~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~p 487 (857)
T PLN03077 409 VKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKP 487 (857)
T ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999986 5999
Q ss_pred CHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHH
Q 037256 311 NPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGY 390 (680)
Q Consensus 311 ~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~ 390 (680)
|..||++++.+|++.|+++.+.++|..+.+.|+.++..++|+|+++|+|+|++++|.++|+.+ .+|+++||+||.+|
T Consensus 488 d~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~---~~d~~s~n~lI~~~ 564 (857)
T PLN03077 488 NSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH---EKDVVSWNILLTGY 564 (857)
T ss_pred CHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc---CCChhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998 78999999999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhh-cCCCcChHHHHHHHHHHHhcCCHHHH
Q 037256 391 GMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTK-LSVKPEVKHYACMVDMLGRAGCLYEA 469 (680)
Q Consensus 391 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~li~~~~~~g~~~~A 469 (680)
+++|+.++|+++|++|.+.|+.||.+||+++|.+|++.|++++|.++|+.|.+ .|+.|+..+|++|+++|+|+|++++|
T Consensus 565 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA 644 (857)
T PLN03077 565 VAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEA 644 (857)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999995 49999999999999999999999999
Q ss_pred HHHHHhCCCCCCHhHHHHHHHHHHHH-----HHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 037256 470 FDMIKQMPLPPNDSVWGALLLACRIH-----GEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKGLKK 544 (680)
Q Consensus 470 ~~~~~~m~~~p~~~~~~~ll~a~~~~-----~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 544 (680)
.+++++|+++||..+|++|+++|+.| |+.+++++++++|+++++|+.|+++|+..|+|++|.++++.|+++|++|
T Consensus 645 ~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k 724 (857)
T PLN03077 645 YNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTV 724 (857)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999988 7889999999999999999999999999999999999999999999999
Q ss_pred CCceeEEEECCEEEEEEeCCCCCcccHHHHHHHHHHHHHHHHcCcccCCccccccCchhhhhhhhhhchHHHHHHhcccC
Q 037256 545 PAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMN 624 (680)
Q Consensus 545 ~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 624 (680)
+||+|||++++.+|.|.+||.+||+.++||..++++..+|++.||+||+..++ ++++++|+..+++||||||+|||||+
T Consensus 725 ~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~ 803 (857)
T PLN03077 725 DPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLIN 803 (857)
T ss_pred CCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999888 55788999999999999999999999
Q ss_pred CCCCCeEEEEecccccchhhhHHHHHhhhhCceEEEecCCccccccCccccCCC
Q 037256 625 LTPEAVVQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCND 678 (680)
Q Consensus 625 ~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~~h~~~~g~csc~~ 678 (680)
+|+|+||||+||||+|+|||+++||||++++|+|||||.+|||||++|+|||+|
T Consensus 804 ~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 804 TVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred CCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 999999999999999999999999999999999999999999999999999998
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.5e-123 Score=1044.54 Aligned_cols=605 Identities=36% Similarity=0.668 Sum_probs=596.8
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHhCC-CCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 037256 74 YSFLWNTMIRAYANNGHCVETLELYSTMRRSG-ISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALV 152 (680)
Q Consensus 74 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li 152 (680)
+.++|+++|.++.+.|++++|+++|+.|...+ ..||..||+.++.+|++.++++.|.++|..|.+.|+.||..++|.|+
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li 165 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVL 165 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 66799999999999999999999999998764 78999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHH
Q 037256 153 DMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQA 232 (680)
Q Consensus 153 ~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 232 (680)
++|+++|++++|.++|++|++||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|+.+.+.+
T Consensus 166 ~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~ 245 (697)
T PLN03081 166 LMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQ 245 (697)
T ss_pred HHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH
Q 037256 233 VHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNP 312 (680)
Q Consensus 233 ~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 312 (680)
+|..+.+.|+.+|..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|++.|++++|+++|++|.+.|+.||.
T Consensus 246 l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~ 325 (697)
T PLN03081 246 LHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQ 325 (697)
T ss_pred HHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHh
Q 037256 313 VTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGM 392 (680)
Q Consensus 313 ~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~ 392 (680)
.||++++.+|++.|.++.|.++|..+.+.|+.+|..++|+|+++|+|+|++++|.++|++| .+||+.+||+||.+|++
T Consensus 326 ~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m--~~~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 326 FTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM--PRKNLISWNALIAGYGN 403 (697)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhC--CCCCeeeHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 78999999999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhc-CCCcChHHHHHHHHHHHhcCCHHHHHH
Q 037256 393 HGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKL-SVKPEVKHYACMVDMLGRAGCLYEAFD 471 (680)
Q Consensus 393 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~ 471 (680)
+|+.++|+++|++|.+.|+.||.+||++++.+|++.|++++|.++|+.|.+. |+.|+..+|++|+++|++.|++++|.+
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~ 483 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999876 999999999999999999999999999
Q ss_pred HHHhCCCCCCHhHHHHHHHHHHHH-----HHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCC
Q 037256 472 MIKQMPLPPNDSVWGALLLACRIH-----GEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKGLKKPA 546 (680)
Q Consensus 472 ~~~~m~~~p~~~~~~~ll~a~~~~-----~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 546 (680)
++++|+.+|+..+|++|+.+|+.+ |+.+++++++++|++..+|..|+++|++.|+|++|.++++.|+++|++|.|
T Consensus 484 ~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~ 563 (697)
T PLN03081 484 MIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHP 563 (697)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCC
Confidence 999999999999999999999988 788999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEECCEEEEEEeCCCCCcccHHHHHHHHHHHHHHHHcCcccCCccccccCchhhhhhhhhhchHHHHHHhcccCCC
Q 037256 547 AFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGIMNLT 626 (680)
Q Consensus 547 ~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 626 (680)
|+|||++++.+|.|.+||..||+.++||.++.++..+|++.||+||+.+++||+++++|+..+++||||||+||||+++|
T Consensus 564 g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~ 643 (697)
T PLN03081 564 ACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTS 643 (697)
T ss_pred CeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEecccccchhhhHHHHHhhhhCceEEEecCCccccccCccccCCCCC
Q 037256 627 PEAVVQVTKNLRVCNDCHSAFRFISYIYRRKIIVRDANRFHHFEGGTCSCNDYW 680 (680)
Q Consensus 627 ~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~~~~~~~~h~~~~g~csc~~~~ 680 (680)
+|.||||+||||+|+|||+|+||||++++|+|||||.+|||||++|+|||+|||
T Consensus 644 ~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 644 EWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred CCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 999999999999999999999999999999999999999999999999999999
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.2e-81 Score=722.33 Aligned_cols=645 Identities=26% Similarity=0.404 Sum_probs=571.4
Q ss_pred CCcCC-CCCcchHHHHHHhccccccH---HHHHHHhh------hhhhHHHHHHhhhhhhhcccCCCChHHHHHHhhhccC
Q 037256 1 MRRLG-PSTEGFYDQLLKSCNFLASL---RQIHSSLT------TSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHN 70 (680)
Q Consensus 1 ~~~~~-~~~~~~~~~~l~~~~~~~~~---~~~h~~~~------~~~~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~ 70 (680)
|.+.| .|+..||..++++|...+.+ .++|.++. ++.++|+|+++|++ + |+++.|+++|++|++
T Consensus 77 m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~-~------g~~~~A~~~f~~m~~ 149 (857)
T PLN03077 77 MQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVR-F------GELVHAWYVFGKMPE 149 (857)
T ss_pred HHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHh-C------CChHHHHHHHhcCCC
Confidence 44567 68889999999999988776 88998877 78899999999999 9 999999999999998
Q ss_pred CCCCcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHH
Q 037256 71 DKSYSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAA 150 (680)
Q Consensus 71 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 150 (680)
+ |+++||++|.+|++.|++++|+++|++|...|+.||.+||+.++++|+..+++..++++|..+++.|+.||..++|+
T Consensus 150 ~--d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~ 227 (857)
T PLN03077 150 R--DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNA 227 (857)
T ss_pred C--CeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhH
Confidence 7 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHH
Q 037256 151 LVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKA 230 (680)
Q Consensus 151 Li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 230 (680)
||.+|+++|++++|.++|++|+++|+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.|
T Consensus 228 Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a 307 (857)
T PLN03077 228 LITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLG 307 (857)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC
Q 037256 231 QAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKP 310 (680)
Q Consensus 231 ~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 310 (680)
.++|..+.+.|+.||..+||+|+.+|+++|++++|.++|++|.++|+++||+||.+|++.|++++|+++|++|.+.|+.|
T Consensus 308 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~P 387 (857)
T PLN03077 308 REMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSP 387 (857)
T ss_pred HHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHH
Q 037256 311 NPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGY 390 (680)
Q Consensus 311 ~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~ 390 (680)
|..||++++.+|++.|+++.|.++|+.+.+.|+.++..++|+|+++|+++|++++|.++|++| .++|+++||+||.+|
T Consensus 388 d~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m--~~~d~vs~~~mi~~~ 465 (857)
T PLN03077 388 DEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNI--PEKDVISWTSIIAGL 465 (857)
T ss_pred CceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCeeeHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999 789999999999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHH
Q 037256 391 GMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAF 470 (680)
Q Consensus 391 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 470 (680)
+++|+.++|+++|++|.. +++||..||+++|.+|++.|.++.+.+++..+.+.|+.++..++++||++|+++|++++|.
T Consensus 466 ~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~ 544 (857)
T PLN03077 466 RLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAW 544 (857)
T ss_pred HHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHH
Confidence 999999999999999986 5999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCHhHHHHHHHHHHHH-----HHHHHHHHHc--cCCCCCchHHHHHHHHHhcCChhHHHHHHHHHH-hCCC
Q 037256 471 DMIKQMPLPPNDSVWGALLLACRIH-----GEIAANYLFQ--LEPEHTGYFVLMSNIYAASNKWREVGKLREDMK-NKGL 542 (680)
Q Consensus 471 ~~~~~m~~~p~~~~~~~ll~a~~~~-----~~~~~~~~~~--l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~g~ 542 (680)
++|+++ .||.++|++++.+|.++ |...++++.+ ..|+ ..+|..+..+|++.|++++|.++|+.|. +.|+
T Consensus 545 ~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi 621 (857)
T PLN03077 545 NQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSI 621 (857)
T ss_pred HHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCC
Confidence 999998 89999999999999998 4445555554 4565 5789999999999999999999999999 6788
Q ss_pred CCCCceeEEEECCEEEEEEeCCCCCcccHHHHHHHHHHHHHHHHcCcccCCccccccCchhhhhhhhhhchHHHH-HHhc
Q 037256 543 KKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLA-VAFG 621 (680)
Q Consensus 543 ~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~la-~~~~ 621 (680)
.|+.. .+...+..+.. .+..++ +.++++ +.+..||...+-.-+..+...+.+.- .|+.| ..+.
T Consensus 622 ~P~~~----~y~~lv~~l~r----~G~~~e----A~~~~~---~m~~~pd~~~~~aLl~ac~~~~~~e~-~e~~a~~l~~ 685 (857)
T PLN03077 622 TPNLK----HYACVVDLLGR----AGKLTE----AYNFIN---KMPITPDPAVWGALLNACRIHRHVEL-GELAAQHIFE 685 (857)
T ss_pred CCchH----HHHHHHHHHHh----CCCHHH----HHHHHH---HCCCCCCHHHHHHHHHHHHHcCChHH-HHHHHHHHHh
Confidence 76432 11111111111 112222 344444 44688998665444444322111110 12222 3467
Q ss_pred ccCCCCCCeEEEEecccccchhhhHHHHHhhhhCceEE-------EecCCccccccCccccC
Q 037256 622 IMNLTPEAVVQVTKNLRVCNDCHSAFRFISYIYRRKII-------VRDANRFHHFEGGTCSC 676 (680)
Q Consensus 622 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~-------~~~~~~~h~~~~g~csc 676 (680)
+.|...+..+.+.+-+...|++.++.+....|..+.+. |.-.+..|-|..|--|-
T Consensus 686 l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h 747 (857)
T PLN03077 686 LDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESH 747 (857)
T ss_pred hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCC
Confidence 78887777776667778899999999999999777332 12246788888776543
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.2e-67 Score=590.96 Aligned_cols=499 Identities=19% Similarity=0.248 Sum_probs=457.0
Q ss_pred hhhhHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCC---CCCcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCc
Q 037256 34 TSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHND---KSYSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNS 110 (680)
Q Consensus 34 ~~~~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 110 (680)
+...+..+++.|.+ + |++++|+++|+.|+.+ .|+...++.++.+|.+.|..++|+.+|+.|.. ||.
T Consensus 369 ~~~~~~~~y~~l~r-~------G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~ 437 (1060)
T PLN03218 369 KSPEYIDAYNRLLR-D------GRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTL 437 (1060)
T ss_pred CchHHHHHHHHHHH-C------cCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCH
Confidence 56677778888888 8 9999999999999987 23556677888899999999999999999974 899
Q ss_pred ccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC----CCChhHHHHHHHHH
Q 037256 111 YTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMS----VRDLVSWTVMITAY 186 (680)
Q Consensus 111 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~ 186 (680)
.+|+.++.+|++.|+++.|.++|+.|.+.|+.||..+||.||.+|+++|++++|.++|++|. .||..+|+.||.+|
T Consensus 438 ~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy 517 (1060)
T PLN03218 438 STFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGC 517 (1060)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998 58999999999999
Q ss_pred HhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHH--ccCCCChhHHHHHHHHHHhcCCHHH
Q 037256 187 EQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAIC--NAFLEDLCIQNSIVAMYARCGNVEK 264 (680)
Q Consensus 187 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~Li~~y~~~g~~~~ 264 (680)
++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+ .|+.||..+|++||.+|+++|++++
T Consensus 518 ~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~lde 597 (1060)
T PLN03218 518 ARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDR 597 (1060)
T ss_pred HHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHH
Confidence 99999999999999999999999999999999999999999999999999986 6789999999999999999999999
Q ss_pred HHHHHHhcCC----CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHH
Q 037256 265 ARLVFDMMEK----RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIIN 340 (680)
Q Consensus 265 A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~ 340 (680)
|.++|+.|.+ ++..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+
T Consensus 598 A~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k 677 (1060)
T PLN03218 598 AKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARK 677 (1060)
T ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 9999999985 577999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCC--CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 037256 341 SNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHP--SERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITF 418 (680)
Q Consensus 341 ~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 418 (680)
.|+.|+..+|++||++|+++|++++|.++|++|.. ..||..+||+||.+|++.|++++|+++|++|.+.|+.||..||
T Consensus 678 ~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty 757 (1060)
T PLN03218 678 QGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITY 757 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 99999999999999999999999999999999943 3799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHH----hcC-------------------CHHHHHHHHHh
Q 037256 419 TSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLG----RAG-------------------CLYEAFDMIKQ 475 (680)
Q Consensus 419 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~----~~g-------------------~~~~A~~~~~~ 475 (680)
++++.+|++.|++++|.++|++|.+.|+.||..+|++|+.++. +++ ..++|+.+|++
T Consensus 758 ~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~e 837 (1060)
T PLN03218 758 SILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRE 837 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999997643 222 34679999999
Q ss_pred C---CCCCCHhHHHHHHHHHHHH-HHHHHHHHHc---c--CCCCCchHHHHHHHHHhcCCh-hHHHHHHHHHHhCCCCCC
Q 037256 476 M---PLPPNDSVWGALLLACRIH-GEIAANYLFQ---L--EPEHTGYFVLMSNIYAASNKW-REVGKLREDMKNKGLKKP 545 (680)
Q Consensus 476 m---~~~p~~~~~~~ll~a~~~~-~~~~~~~~~~---l--~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~g~~~~ 545 (680)
| ++.||..+|+++|+++... +...+..+++ . .+.+..+|..|.+.+ |++ ++|..++++|.+.|+.|+
T Consensus 838 M~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~---~~~~~~A~~l~~em~~~Gi~p~ 914 (1060)
T PLN03218 838 TISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF---GEYDPRAFSLLEEAASLGVVPS 914 (1060)
T ss_pred HHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh---ccChHHHHHHHHHHHHcCCCCC
Confidence 9 7899999999999554333 3334444443 2 344567889999887 444 589999999999999875
Q ss_pred C
Q 037256 546 A 546 (680)
Q Consensus 546 ~ 546 (680)
.
T Consensus 915 ~ 915 (1060)
T PLN03218 915 V 915 (1060)
T ss_pred c
Confidence 5
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.4e-65 Score=573.86 Aligned_cols=432 Identities=26% Similarity=0.463 Sum_probs=417.7
Q ss_pred CCCcchHHHHHHhccccccH---HHHHHHhh------hhhhHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCCCCCcc
Q 037256 6 PSTEGFYDQLLKSCNFLASL---RQIHSSLT------TSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKSYSF 76 (680)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~~---~~~h~~~~------~~~~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~~p~~~ 76 (680)
.||..||+.++++|+..+.+ +++|..+. |++++|+|+++|.+ + |++++|.++|++|+.+ |++
T Consensus 120 ~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k-~------g~~~~A~~lf~~m~~~--~~~ 190 (697)
T PLN03081 120 TLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVK-C------GMLIDARRLFDEMPER--NLA 190 (697)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhc-C------CCHHHHHHHHhcCCCC--Cee
Confidence 58899999999999998877 89999887 99999999999999 9 9999999999999976 999
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 037256 77 LWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYA 156 (680)
Q Consensus 77 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~ 156 (680)
+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.+..+.++++|..+.+.|+.+|..++|+||++|+
T Consensus 191 t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~ 270 (697)
T PLN03081 191 SWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYS 270 (697)
T ss_pred eHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHhcCCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHH
Q 037256 157 KCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGY 236 (680)
Q Consensus 157 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 236 (680)
++|++++|.++|++|+++|+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|++++|.++|..
T Consensus 271 k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~ 350 (697)
T PLN03081 271 KCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAG 350 (697)
T ss_pred HCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHH
Q 037256 237 AICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTAL 316 (680)
Q Consensus 237 ~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 316 (680)
+.+.|+.||..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|++.|+.++|+++|++|.+.|+.||..||+
T Consensus 351 m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~ 430 (697)
T PLN03081 351 LIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFL 430 (697)
T ss_pred HHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcchHHHHHHHHHHHH-cCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCC
Q 037256 317 ILVSACTYLGSRQLGRKFHGYIIN-SNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGH 395 (680)
Q Consensus 317 ~ll~a~~~~g~~~~a~~i~~~~~~-~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~ 395 (680)
.++.+|++.|..++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.++|+++ +..|+..+|++|+.+|..+|+
T Consensus 431 ~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p~~~~~~~Ll~a~~~~g~ 509 (697)
T PLN03081 431 AVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKPTVNMWAALLTACRIHKN 509 (697)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999999976 699999999999999999999999999999998 248999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcC
Q 037256 396 GRKALEFFSQMLEEGVKPD-HITFTSILSACSHAGLIDEGRKCFADMTKLSVKPE 449 (680)
Q Consensus 396 ~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~ 449 (680)
.+.|..+++++.+ +.|+ ..+|+.+++.|++.|++++|.++++.|.+.|+...
T Consensus 510 ~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~ 562 (697)
T PLN03081 510 LELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMH 562 (697)
T ss_pred cHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccC
Confidence 9999999999975 6776 46999999999999999999999999999987643
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.3e-63 Score=559.73 Aligned_cols=491 Identities=14% Similarity=0.161 Sum_probs=453.8
Q ss_pred CCCcchHHHHHHhccccccH---HHHHHHhh-------hhhhHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCCCCCc
Q 037256 6 PSTEGFYDQLLKSCNFLASL---RQIHSSLT-------TSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKSYS 75 (680)
Q Consensus 6 ~~~~~~~~~~l~~~~~~~~~---~~~h~~~~-------~~~~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~~p~~ 75 (680)
.++...|..++..|.+.+.+ .++...+. +..+++.++..|.+ . |.+++|.++|+.|+. ||.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~-~------g~~~eAl~lf~~M~~--pd~ 437 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKK-Q------RAVKEAFRFAKLIRN--PTL 437 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHH-C------CCHHHHHHHHHHcCC--CCH
Confidence 34555688888888766766 55555555 66677888888998 8 999999999999997 699
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 037256 76 FLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMY 155 (680)
Q Consensus 76 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~ 155 (680)
.+||.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|
T Consensus 438 ~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy 517 (1060)
T PLN03218 438 STFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGC 517 (1060)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHhcCC----CCChhHHHHHHHHHHhCCCccHHHHHHHHHHH--cCCCCCHhHHHHHHHHHhccCChHH
Q 037256 156 AKCGQTDDGCKVFDEMS----VRDLVSWTVMITAYEQAEKPEEALILFQKTQQ--EGLLSDSVTIVSVASAVGQLGDVLK 229 (680)
Q Consensus 156 ~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~t~~~ll~~~~~~~~~~~ 229 (680)
++.|++++|.++|++|. .||.++||.||.+|++.|++++|.++|++|.. .|+.||..||+.++.+|++.|++++
T Consensus 518 ~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~lde 597 (1060)
T PLN03218 518 ARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDR 597 (1060)
T ss_pred HHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHH
Confidence 99999999999999996 58999999999999999999999999999986 6799999999999999999999999
Q ss_pred HHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChhHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 037256 230 AQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEK----RDLISWNSMLTGYIQNGQASEALLLFDEMQN 305 (680)
Q Consensus 230 a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 305 (680)
|.++|+.|.+.|+.|+..+|+++|.+|++.|++++|.++|++|.+ ||..+|+++|.+|++.|++++|.++|++|.+
T Consensus 598 A~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k 677 (1060)
T PLN03218 598 AKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARK 677 (1060)
T ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999984 7999999999999999999999999999999
Q ss_pred CCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCC--CCCHhHH
Q 037256 306 SDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPS--ERNVSSW 383 (680)
Q Consensus 306 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~--~~~~~~~ 383 (680)
.|+.||..+|++++.+|++.|++++|.++|+.|.+.|+.||..+||+||.+|++.|++++|.++|++|... .||..+|
T Consensus 678 ~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty 757 (1060)
T PLN03218 678 QGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITY 757 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999543 7999999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----c-------------------CCHHHHHHHHHH
Q 037256 384 NVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSH----A-------------------GLIDEGRKCFAD 440 (680)
Q Consensus 384 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~-------------------g~~~~a~~~~~~ 440 (680)
+++|.+|++.|+.++|.++|++|.+.|+.||..+|++++..|.+ . +..++|..+|++
T Consensus 758 ~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~e 837 (1060)
T PLN03218 758 SILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRE 837 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999876542 1 224679999999
Q ss_pred hhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCHhHHHHHHHHHHHH---HHHHHHHHHc
Q 037256 441 MTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM---PLPPNDSVWGALLLACRIH---GEIAANYLFQ 505 (680)
Q Consensus 441 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~a~~~~---~~~~~~~~~~ 505 (680)
|.+.|+.||..+|+.++.++.+.+..+.+..+++.| +..|+..+|++|+.++... |...++.+.+
T Consensus 838 M~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~~~~A~~l~~em~~ 908 (1060)
T PLN03218 838 TISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEYDPRAFSLLEEAAS 908 (1060)
T ss_pred HHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccChHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998 4567889999999998754 3344444443
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.7e-29 Score=293.52 Aligned_cols=493 Identities=10% Similarity=0.061 Sum_probs=398.4
Q ss_pred hhhhHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCCCC-CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCccc
Q 037256 34 TSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKS-YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYT 112 (680)
Q Consensus 34 ~~~~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 112 (680)
++.+++.+...|.+ . |++++|.+.|+.+....| +...|..+...+...|++++|++.|+++.+.... +...
T Consensus 362 ~~~~~~~l~~~~~~-~------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~ 433 (899)
T TIGR02917 362 DPAALSLLGEAYLA-L------GDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRA 433 (899)
T ss_pred CHHHHHHHHHHHHH-C------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhh
Confidence 66777888888888 8 999999999999887777 5667888888899999999999999998876533 3345
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHhC
Q 037256 113 FPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMS---VRDLVSWTVMITAYEQA 189 (680)
Q Consensus 113 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~ 189 (680)
...++..+.+.|++++|..+++.+.+.. +.++.++..+...|...|++++|.+.|+++. ..+...+..+...+...
T Consensus 434 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 512 (899)
T TIGR02917 434 DLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQE 512 (899)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHC
Confidence 5567777888999999999999887753 5677788889999999999999999998764 23566788888889999
Q ss_pred CCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 037256 190 EKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVF 269 (680)
Q Consensus 190 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f 269 (680)
|++++|.+.|+++.+.+ +.+..++..+...+...|+.++|...+..+.+.+ +.+...+..++..|.+.|++++|..++
T Consensus 513 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 590 (899)
T TIGR02917 513 GNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAIL 590 (899)
T ss_pred CCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999988764 4466778888888888999999999998887765 455667778888999999999999999
Q ss_pred HhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCc
Q 037256 270 DMMEK---RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKID 346 (680)
Q Consensus 270 ~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~ 346 (680)
+.+.+ .+...|..+...|.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|..+++.+.+.. +.+
T Consensus 591 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 668 (899)
T TIGR02917 591 NEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDN 668 (899)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCC
Confidence 88864 467788888999999999999999999888653 4456677788888888999999999998888764 456
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHhhcCCCC-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037256 347 ATLRNAVMDMYAKCGDLDTAENMFNDIHPSE-RNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSAC 425 (680)
Q Consensus 347 ~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 425 (680)
...+..+...+.+.|++++|.++++.+.... .+...|..+...+...|++++|++.|+++... .|+..++..+..++
T Consensus 669 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~ 746 (899)
T TIGR02917 669 TEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRAL 746 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHH
Confidence 7788888889999999999999998885543 35667888888888899999999999988884 56667777788888
Q ss_pred HccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHhHHHHHHHHHHHH----HHHH
Q 037256 426 SHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM-PLP-PNDSVWGALLLACRIH----GEIA 499 (680)
Q Consensus 426 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~a~~~~----~~~~ 499 (680)
.+.|++++|.+.++.+.+.. +.+...+..+...|.+.|++++|.+.|+++ ... ++...++.+...+... +...
T Consensus 747 ~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~A~~~ 825 (899)
T TIGR02917 747 LASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKDPRALEY 825 (899)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHH
Confidence 88899999998888888754 566778888888888899999999888887 333 3566677776666554 5666
Q ss_pred HHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 037256 500 ANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKGL 542 (680)
Q Consensus 500 ~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 542 (680)
+++++++.|+++..+..++.+|...|++++|.++++++.+.+.
T Consensus 826 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 826 AEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 7777888888888888888888888888888888888887654
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=6.6e-29 Score=291.34 Aligned_cols=491 Identities=12% Similarity=0.041 Sum_probs=406.8
Q ss_pred hhhhHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCCCC-CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCccc
Q 037256 34 TSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKS-YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYT 112 (680)
Q Consensus 34 ~~~~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 112 (680)
++.....+...+.+ . |++++|...|+.+....| +...|+.+...+.+.|++++|.++|+++.+..+ .+...
T Consensus 328 ~~~~~~~la~~~~~-~------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~ 399 (899)
T TIGR02917 328 SHQARRLLASIQLR-L------GRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAA 399 (899)
T ss_pred ChHHHHHHHHHHHH-C------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHH
Confidence 55666777777777 7 999999999998887766 567888899999999999999999999887642 24556
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhHHHHHHHHHHhC
Q 037256 113 FPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSV---RDLVSWTVMITAYEQA 189 (680)
Q Consensus 113 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~ 189 (680)
+..+...+...|+.++|...+..+.+... ........++..|.+.|++++|.++++++.. .+..+|+.+...+...
T Consensus 400 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 478 (899)
T TIGR02917 400 RTQLGISKLSQGDPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGK 478 (899)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhC
Confidence 77777788889999999999999888752 3445666788889999999999999988763 3667899999999999
Q ss_pred CCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 037256 190 EKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVF 269 (680)
Q Consensus 190 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f 269 (680)
|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.+..+.+.. +.+..++..+...|.+.|+.++|...|
T Consensus 479 ~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 556 (899)
T TIGR02917 479 GDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWL 556 (899)
T ss_pred CCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999988753 3455667778888889999999999999998765 456778888999999999999999999
Q ss_pred HhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCc
Q 037256 270 DMMEK---RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKID 346 (680)
Q Consensus 270 ~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~ 346 (680)
+++.+ .+...+..++..|.+.|++++|..+++++.+.. +.+..++..+..++...|+++.|...+..+.+.. +.+
T Consensus 557 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 634 (899)
T TIGR02917 557 EKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDS 634 (899)
T ss_pred HHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 98854 356678888999999999999999999998653 5677888899999999999999999999988765 456
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037256 347 ATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSAC 425 (680)
Q Consensus 347 ~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 425 (680)
...+..+..+|.+.|++++|...|+++....| +..+|..++..+...|++++|.++++.+.+.+ +++...+..+...+
T Consensus 635 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 713 (899)
T TIGR02917 635 ALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLY 713 (899)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHH
Confidence 77888899999999999999999998866555 47889999999999999999999999998864 44556778888889
Q ss_pred HccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHH-----HHH
Q 037256 426 SHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM-PLPP-NDSVWGALLLACRIH-----GEI 498 (680)
Q Consensus 426 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~-----~~~ 498 (680)
...|++++|.+.|+.+...+ |+..++..+..++.+.|++++|.+.++++ ...| +...+..+...+... +..
T Consensus 714 ~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~ 791 (899)
T TIGR02917 714 LRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIK 791 (899)
T ss_pred HHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence 99999999999999988764 55577788899999999999999999887 3344 455555555555543 777
Q ss_pred HHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 037256 499 AANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKG 541 (680)
Q Consensus 499 ~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 541 (680)
.++++++..|+++..+..+++++...|+ ++|++.++++.+..
T Consensus 792 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~ 833 (899)
T TIGR02917 792 HYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA 833 (899)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC
Confidence 8888899999999999999999999999 88999999987653
No 9
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=99.97 E-value=1.7e-32 Score=227.15 Aligned_cols=106 Identities=53% Similarity=0.874 Sum_probs=97.3
Q ss_pred ceeEEEECCEEEEEEeCCCCCcccHHHHHHHHHHHHHHHHcCcccCCccccccCchhhh--------hhhhhhchHHHHH
Q 037256 547 AFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDR--------EHMLNYHSEKLAV 618 (680)
Q Consensus 547 ~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~--------~~~~~~~~~~la~ 618 (680)
|+||+++ |.|.+||.+||+. ++..++...||.|++..+.|+++++++ +..+++||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 6899876 9999999999987 556777889999999999998877665 6688999999999
Q ss_pred HhcccCCCCCCeEEEEecc-cccchhhhHHHHHhhhhCceEEEecCCcccccc
Q 037256 619 AFGIMNLTPEAVVQVTKNL-RVCNDCHSAFRFISYIYRRKIIVRDANRFHHFE 670 (680)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~s~~~~~~~~~~~~~~~h~~~ 670 (680)
||||+++ +|+||+ |||+|||+++|+||++++|+|+|||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999998 899999 999999999999999999999999999999996
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.92 E-value=2.2e-20 Score=220.67 Aligned_cols=489 Identities=12% Similarity=0.057 Sum_probs=302.5
Q ss_pred hhhhHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCCCCCcch-H----------------HHHHHHHHhCCCchHHHH
Q 037256 34 TSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKSYSFL-W----------------NTMIRAYANNGHCVETLE 96 (680)
Q Consensus 34 ~~~~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~~p~~~~-~----------------~~li~~~~~~g~~~~A~~ 96 (680)
++.+...+...+.+ . |+.++|.+.+++..+..|+... + -.+.+.+.+.|++++|+.
T Consensus 61 ~p~~~~~~~~~~l~-~------g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~ 133 (1157)
T PRK11447 61 NPDVIAARFRLLLR-Q------GDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALA 133 (1157)
T ss_pred CHHHHHHHHHHHHh-C------CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHH
Confidence 66777777777777 7 9999999999999988885432 2 223346788999999999
Q ss_pred HHHHHHhCCCCCCcc-cHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCC
Q 037256 97 LYSTMRRSGISSNSY-TFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVRD 175 (680)
Q Consensus 97 ~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~~~ 175 (680)
.|+++.+... |+.. ............++.++|...++.+++.. +.+...+..+...+...|+.++|+..|+++....
T Consensus 134 ~~~~~l~~~p-~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~ 211 (1157)
T PRK11447 134 SYDKLFNGAP-PELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSP 211 (1157)
T ss_pred HHHHHccCCC-CChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCC
Confidence 9999987532 2321 11111222234588999999999999875 4567778889999999999999999988763211
Q ss_pred h------hH-----------------HH----------------------------------HHHHHHHhCCCccHHHHH
Q 037256 176 L------VS-----------------WT----------------------------------VMITAYEQAEKPEEALIL 198 (680)
Q Consensus 176 ~------~~-----------------~~----------------------------------~li~~~~~~g~~~~A~~~ 198 (680)
. .. +. .....+...|++++|+..
T Consensus 212 ~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~ 291 (1157)
T PRK11447 212 AGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPE 291 (1157)
T ss_pred CchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHH
Confidence 0 00 10 112345567788888888
Q ss_pred HHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCCh-hHH------------HHHHHHHHhcCCHHHH
Q 037256 199 FQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDL-CIQ------------NSIVAMYARCGNVEKA 265 (680)
Q Consensus 199 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~------------~~Li~~y~~~g~~~~A 265 (680)
|++.++.. +.+...+..+..++...|++++|...+..+++....... ..+ ..+...+.+.|++++|
T Consensus 292 l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA 370 (1157)
T PRK11447 292 LQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQA 370 (1157)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHH
Confidence 88777653 235666777777778888888888888887765432211 111 1223456677888888
Q ss_pred HHHHHhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcC
Q 037256 266 RLVFDMMEK---RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSN 342 (680)
Q Consensus 266 ~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~ 342 (680)
...|+++.+ .+...+..+...+...|++++|++.|++..+.. +.+...+..+...+. .++.++|..++..+....
T Consensus 371 ~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~ 448 (1157)
T PRK11447 371 ERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQ 448 (1157)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHH
Confidence 888887764 345566777778888888888888888877642 223333333333332 233444444433221110
Q ss_pred C--------CCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 037256 343 M--------KIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERN-VSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKP 413 (680)
Q Consensus 343 ~--------~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 413 (680)
. ......+..+...+...|++++|.+.|++.....|+ ...+..+...|.+.|++++|...++++.+ ..|
T Consensus 449 ~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~--~~P 526 (1157)
T PRK11447 449 RRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQ--QKP 526 (1157)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCC
Confidence 0 000112233444555566666666666665444443 44455555666666666666666666655 233
Q ss_pred CHH-HHHH--------------------------------------------HHHHHHccCCHHHHHHHHHHhhhcCCCc
Q 037256 414 DHI-TFTS--------------------------------------------ILSACSHAGLIDEGRKCFADMTKLSVKP 448 (680)
Q Consensus 414 ~~~-t~~~--------------------------------------------ll~a~~~~g~~~~a~~~~~~m~~~~~~p 448 (680)
+.. .+.. +...+...|+.++|.++++. .++
T Consensus 527 ~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~ 601 (1157)
T PRK11447 527 NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPP 601 (1157)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCC
Confidence 221 2222 22334444555555555441 234
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHHH-----HHHHHHHHHccCCCCCchHHHHHHHH
Q 037256 449 EVKHYACMVDMLGRAGCLYEAFDMIKQM-PLPPN-DSVWGALLLACRIH-----GEIAANYLFQLEPEHTGYFVLMSNIY 521 (680)
Q Consensus 449 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~-----~~~~~~~~~~l~p~~~~~~~~l~~~~ 521 (680)
+...+..+.+.|.+.|++++|++.+++. ...|+ ...+..+...+... |...++++++..|+++..+..++.++
T Consensus 602 ~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~ 681 (1157)
T PRK11447 602 STRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAW 681 (1157)
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 4455666777777778888887777776 34443 44555555555444 56666777777777777777778888
Q ss_pred HhcCChhHHHHHHHHHHhCC
Q 037256 522 AASNKWREVGKLREDMKNKG 541 (680)
Q Consensus 522 ~~~g~~~~A~~~~~~m~~~g 541 (680)
...|++++|.++++.+....
T Consensus 682 ~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 682 AALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HhCCCHHHHHHHHHHHhhhC
Confidence 88888888888888776543
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.91 E-value=6.9e-20 Score=216.47 Aligned_cols=473 Identities=11% Similarity=0.086 Sum_probs=316.6
Q ss_pred CChHHHHHHhhhccCCCC-CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccH-----------------HHHH
Q 037256 56 GEPNTARSLFNSIHNDKS-YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTF-----------------PFVL 117 (680)
Q Consensus 56 g~~~~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-----------------~~ll 117 (680)
++.+.|.+.++++....| |...+..++..+.+.|+.++|.+.+++..+.. |+...+ ..+.
T Consensus 42 ~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~~~~~l~~A 119 (1157)
T PRK11447 42 HREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPEGRQALQQA 119 (1157)
T ss_pred CChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCchhhHHHHH
Confidence 999999999999998888 67788999999999999999999999998864 444332 2233
Q ss_pred HHHhccCChHHHHHHHHHHHHhCCCCchhHHH-HHHHHHHhcCChHHHHHHHhcCCC--C-ChhHHHHHHHHHHhCCCcc
Q 037256 118 KACASNSLILEGKVVHGDIIRTGFLSDSYVQA-ALVDMYAKCGQTDDGCKVFDEMSV--R-DLVSWTVMITAYEQAEKPE 193 (680)
Q Consensus 118 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-~Li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~ 193 (680)
..+...|++++|.+.++.+++.. +++..... .+.......|+.++|.+.|+++.. | +...+..+...+...|+++
T Consensus 120 ~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~ 198 (1157)
T PRK11447 120 RLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRD 198 (1157)
T ss_pred HHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHH
Confidence 45778899999999999998764 33332211 112222346999999999999874 3 5667889999999999999
Q ss_pred HHHHHHHHHHHcCC------------------CCCH-hHHH----------------------------------HHHHH
Q 037256 194 EALILFQKTQQEGL------------------LSDS-VTIV----------------------------------SVASA 220 (680)
Q Consensus 194 ~A~~~~~~m~~~g~------------------~p~~-~t~~----------------------------------~ll~~ 220 (680)
+|++.|+++..... .++. ..+. .....
T Consensus 199 eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~ 278 (1157)
T PRK11447 199 EGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLA 278 (1157)
T ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHH
Confidence 99999998865321 0000 0010 01123
Q ss_pred HhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC---hhHHHHH------------
Q 037256 221 VGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEK--RD---LISWNSM------------ 283 (680)
Q Consensus 221 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~~---~~~~~~l------------ 283 (680)
+...|++++|...+..+++.. +.+..++..|...|.+.|++++|+..|++..+ |+ ...|..+
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 345567777777777766653 33556666677777777777777777766553 21 1112211
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCH
Q 037256 284 LTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDL 363 (680)
Q Consensus 284 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~ 363 (680)
...+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|.+.++.+.+.. +.+...+..+...|. .++.
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~ 434 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSP 434 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCH
Confidence 234556677777777777776643 2344455566666677777777777777776654 334445555555553 3456
Q ss_pred HHHHHHHhhcCCCCCC----------HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHH
Q 037256 364 DTAENMFNDIHPSERN----------VSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH-ITFTSILSACSHAGLID 432 (680)
Q Consensus 364 ~~A~~~f~~~~~~~~~----------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~ 432 (680)
++|...++.+....+. ...+..+...+...|++++|++.|++..+ ..|+. ..+..+...+.+.|+++
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~--~~P~~~~~~~~LA~~~~~~G~~~ 512 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLA--LDPGSVWLTYRLAQDLRQAGQRS 512 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHH
Confidence 7777776665222111 12344556677789999999999999998 56765 46777888999999999
Q ss_pred HHHHHHHHhhhcCCCcChHHHHHH--------------------------------------------HHHHHhcCCHHH
Q 037256 433 EGRKCFADMTKLSVKPEVKHYACM--------------------------------------------VDMLGRAGCLYE 468 (680)
Q Consensus 433 ~a~~~~~~m~~~~~~p~~~~~~~l--------------------------------------------i~~~~~~g~~~~ 468 (680)
+|...++++.+.. +.+...+..+ .+.+...|+.++
T Consensus 513 ~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 513 QADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence 9999999988752 2222222222 233444555555
Q ss_pred HHHHHHhCCCCCCHhHHHHHHHHHHHH-----HHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 037256 469 AFDMIKQMPLPPNDSVWGALLLACRIH-----GEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNK 540 (680)
Q Consensus 469 A~~~~~~m~~~p~~~~~~~ll~a~~~~-----~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 540 (680)
|.++++.-| ++...+..+-..+... |...++++++.+|+++..+..++.+|...|++++|++.++...+.
T Consensus 592 A~~~l~~~p--~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 592 AEALLRQQP--PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred HHHHHHhCC--CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 555555322 2222333333333332 677788899999999999999999999999999999999987653
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.90 E-value=1.6e-18 Score=195.75 Aligned_cols=469 Identities=13% Similarity=0.034 Sum_probs=327.2
Q ss_pred cCCCChHHHHHHhhhccCCCC-CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHH
Q 037256 53 TTYGEPNTARSLFNSIHNDKS-YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKV 131 (680)
Q Consensus 53 ~~~g~~~~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 131 (680)
...|++++|...|+...+..| +..++..+.+.|.+.|++++|+..+++..+. .|+...|..++... ++.++|..
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~ 129 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVT 129 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHH
Confidence 344999999999999999988 5678899999999999999999999999886 45555555555333 88899999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHH--------HHhcCChHHHHHHHhcCCCCC--hhH-HHHHHHHHHhCCCccHHHHHHH
Q 037256 132 VHGDIIRTGFLSDSYVQAALVDM--------YAKCGQTDDGCKVFDEMSVRD--LVS-WTVMITAYEQAEKPEEALILFQ 200 (680)
Q Consensus 132 ~~~~~~~~g~~~~~~~~~~Li~~--------~~~~g~~~~A~~~f~~~~~~~--~~~-~~~li~~~~~~g~~~~A~~~~~ 200 (680)
+++++++.. +.+..++..+... |.+.++..+|++ .+...++ ... .-.+...|.+.|++++|++++.
T Consensus 130 ~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~ 206 (987)
T PRK09782 130 TVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYN 206 (987)
T ss_pred HHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 999999985 3445566656655 877777777776 3333333 433 4444899999999999999999
Q ss_pred HHHHcCCCCCHhHHHHHHHHHhc-cCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----
Q 037256 201 KTQQEGLLSDSVTIVSVASAVGQ-LGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEK----- 274 (680)
Q Consensus 201 ~m~~~g~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~----- 274 (680)
++.+.+. .+..-...+-.++.. .++ +.+..++.. .+..+..+...+.+.|.+.|+.++|.++++++..
T Consensus 207 ~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~ 280 (987)
T PRK09782 207 EARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTD 280 (987)
T ss_pred HHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCC
Confidence 9999863 334435555556666 355 666666442 3446888899999999999999999999998762
Q ss_pred CChhHH-------------------------------------------HH-----------------------------
Q 037256 275 RDLISW-------------------------------------------NS----------------------------- 282 (680)
Q Consensus 275 ~~~~~~-------------------------------------------~~----------------------------- 282 (680)
++..+| ..
T Consensus 281 ~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 360 (987)
T PRK09782 281 AQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAE 360 (987)
T ss_pred CccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhH
Confidence 100000 00
Q ss_pred ---------------------HHHHHHHcCChhHHHHHHHHHHhC-C-CCCCHhhHHHHHHHHhhh--------------
Q 037256 283 ---------------------MLTGYIQNGQASEALLLFDEMQNS-D-CKPNPVTALILVSACTYL-------------- 325 (680)
Q Consensus 283 ---------------------li~~~~~~g~~~~A~~~~~~m~~~-g-~~p~~~t~~~ll~a~~~~-------------- 325 (680)
+-....++|+.++|.++|++.... + -.++..-...++..+...
T Consensus 361 ~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 440 (987)
T PRK09782 361 ALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSK 440 (987)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcc
Confidence 000123556677777777665441 1 111111111222222222
Q ss_pred -------------------------------------------------cchHHHHHHHHHHHHcCCCCchHHHHHHHHH
Q 037256 326 -------------------------------------------------GSRQLGRKFHGYIINSNMKIDATLRNAVMDM 356 (680)
Q Consensus 326 -------------------------------------------------g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~ 356 (680)
+..++|...+....... |+......+...
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~a 518 (987)
T PRK09782 441 PLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQ--PDAWQHRAVAYQ 518 (987)
T ss_pred ccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHhC--CchHHHHHHHHH
Confidence 33344555444444332 333333334445
Q ss_pred HHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHH
Q 037256 357 YAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHI-TFTSILSACSHAGLIDEGR 435 (680)
Q Consensus 357 y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~ 435 (680)
+...|++++|...|+++....|+...+..+...+.+.|+.++|...+++..+. .|+.. .+..+.......|++++|.
T Consensus 519 l~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~l~~~Gr~~eAl 596 (987)
T PRK09782 519 AYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQRYIPGQPELAL 596 (987)
T ss_pred HHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHhCCCHHHHH
Confidence 56788888888888887554555566777777788888999999999888874 35443 3333344555669999999
Q ss_pred HHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHhHHHHHHH-HHHHH-----HHHHHHHHHccCC
Q 037256 436 KCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM-PLPPNDSVWGALLL-ACRIH-----GEIAANYLFQLEP 508 (680)
Q Consensus 436 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~-a~~~~-----~~~~~~~~~~l~p 508 (680)
..+++..+. .|+...|..+..++.+.|++++|+..+++. ...|+...+...++ .+... +...+++++++.|
T Consensus 597 ~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P 674 (987)
T PRK09782 597 NDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP 674 (987)
T ss_pred HHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 999988865 467888889999999999999999999887 66777655444444 44333 6777889999999
Q ss_pred CCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 037256 509 EHTGYFVLMSNIYAASNKWREVGKLREDMKNKG 541 (680)
Q Consensus 509 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 541 (680)
+++..+..++.+|...|++++|+..+++..+..
T Consensus 675 ~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 675 DDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999987643
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.87 E-value=1.1e-18 Score=174.96 Aligned_cols=447 Identities=14% Similarity=0.120 Sum_probs=353.7
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 037256 78 WNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAK 157 (680)
Q Consensus 78 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~ 157 (680)
-..|..-..+.|++++|.+.-...-+.. +.+......+-..+.+..+++...+--...++.. +.-..+|+.+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 4455666778899999998776554432 2233344444445666666666555444444432 3456788999999999
Q ss_pred cCChHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHH-HHHhccCChHHHHHH
Q 037256 158 CGQTDDGCKVFDEMSV---RDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVA-SAVGQLGDVLKAQAV 233 (680)
Q Consensus 158 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~~~~~~~~~~~a~~~ 233 (680)
.|++++|+.+++.+.+ ..+..|..+..++...|+.+.|.+.|.+.++. .|+.+...+-+ ...-..|++.+|..-
T Consensus 129 rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHH
Confidence 9999999999998764 35679999999999999999999999998874 56655443322 333456889999998
Q ss_pred HHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC
Q 037256 234 HGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRD---LISWNSMLTGYIQNGQASEALLLFDEMQNSDCKP 310 (680)
Q Consensus 234 ~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 310 (680)
+.++++.. +.-..+|+.|...+-..|++..|..-|++..+-| ...|-.|...|-..+.+++|+..+.+.... +|
T Consensus 207 YlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rp 283 (966)
T KOG4626|consen 207 YLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RP 283 (966)
T ss_pred HHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CC
Confidence 88887764 2345678889999999999999999999987644 357888999999999999999999888764 55
Q ss_pred C-HhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCC-HhHHHHHHH
Q 037256 311 N-PVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERN-VSSWNVLIA 388 (680)
Q Consensus 311 ~-~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~-~~~~~~li~ 388 (680)
+ ...+..+...|...|.++.|...+++.+... +.-...|+.|..++-..|++.+|.+.+.+.....|+ ..+.+.|..
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgn 362 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGN 362 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 4 5678888888899999999999999998765 344678999999999999999999999998666665 678899999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcC-hHHHHHHHHHHHhcCCH
Q 037256 389 GYGMHGHGRKALEFFSQMLEEGVKPDHI-TFTSILSACSHAGLIDEGRKCFADMTKLSVKPE-VKHYACMVDMLGRAGCL 466 (680)
Q Consensus 389 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~ 466 (680)
.|...|.+++|..+|....+ +.|... .++.|...|-+.|++++|...+++..+ |.|+ ...|+.|...|-..|+.
T Consensus 363 i~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v 438 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDV 438 (966)
T ss_pred HHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhH
Confidence 99999999999999999988 888865 789999999999999999999999886 5676 56789999999999999
Q ss_pred HHHHHHHHhC-CCCCCH-hHHHHHHHHHHHH-----HHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHH
Q 037256 467 YEAFDMIKQM-PLPPND-SVWGALLLACRIH-----GEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLRED 536 (680)
Q Consensus 467 ~~A~~~~~~m-~~~p~~-~~~~~ll~a~~~~-----~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 536 (680)
+.|.+.+.+. .+.|.- ...+.|-+.++.. |....+..+.++|+-+.+|..++..+--..+|.+-.+.+++
T Consensus 439 ~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~k 515 (966)
T KOG4626|consen 439 SAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKK 515 (966)
T ss_pred HHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHH
Confidence 9999999886 677764 3555666666655 67788899999999999999998887777777764433333
No 14
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.86 E-value=3.3e-19 Score=187.80 Aligned_cols=302 Identities=12% Similarity=0.097 Sum_probs=170.6
Q ss_pred HHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHh
Q 037256 81 MIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSD---SYVQAALVDMYAK 157 (680)
Q Consensus 81 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~Li~~~~~ 157 (680)
....+...|++++|+..|+++.+.++ .+..++..+...+...|++++|..+++.+++.+..++ ...+..+...|.+
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 34445667778888888888877532 2444666677777777777777777777766432211 2345666666666
Q ss_pred cCChHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHH
Q 037256 158 CGQTDDGCKVFDEMSV---RDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVH 234 (680)
Q Consensus 158 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 234 (680)
.|++++|.++|+++.+ .+..+++.++..+.+.|++++|++.++.+.+.+..++...
T Consensus 120 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--------------------- 178 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE--------------------- 178 (389)
T ss_pred CCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH---------------------
Confidence 7777777777666643 3445666666666666666666666666655432111100
Q ss_pred HHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC
Q 037256 235 GYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEK---RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPN 311 (680)
Q Consensus 235 ~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 311 (680)
....+..+...+.+.|++++|...|+++.+ .+...+..+...|.+.|++++|.++|+++.+.+....
T Consensus 179 ----------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 248 (389)
T PRK11788 179 ----------IAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYL 248 (389)
T ss_pred ----------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhH
Confidence 011233455556666666666666666543 2344566666777777777777777777765421111
Q ss_pred HhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHH
Q 037256 312 PVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYG 391 (680)
Q Consensus 312 ~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~ 391 (680)
..++..+..++...|++++|.+.++.+.+.. |+...+..++..|.+.|++++|.++|+++....|+..+++.++..+.
T Consensus 249 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~ 326 (389)
T PRK11788 249 SEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHL 326 (389)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhh
Confidence 2334444455555555555555555544432 23333355555555555555555555555444555555555555444
Q ss_pred h---cCChHHHHHHHHHHHHcCCCCCHH
Q 037256 392 M---HGHGRKALEFFSQMLEEGVKPDHI 416 (680)
Q Consensus 392 ~---~g~~~~A~~l~~~m~~~g~~p~~~ 416 (680)
. .|+.++++.++++|.+.+++|++.
T Consensus 327 ~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 327 AEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred hccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 2 335555555555555555544444
No 15
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.85 E-value=3.6e-16 Score=176.86 Aligned_cols=489 Identities=10% Similarity=0.006 Sum_probs=340.1
Q ss_pred hhhhHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCC------
Q 037256 34 TSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKSYSFLWNTMIRAYANNGHCVETLELYSTMRRSGIS------ 107 (680)
Q Consensus 34 ~~~~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~------ 107 (680)
++.+...|...|.+ . |++++|+..+++.....|+...|..++..+ +++.+|..+|+++....+.
T Consensus 77 n~~~~~~LA~~yl~-~------g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye~l~~~~P~n~~~~~ 146 (987)
T PRK09782 77 NIPLTLYLAEAYRH-F------GHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVEELLAQQKACDAVPT 146 (987)
T ss_pred CHHHHHHHHHHHHH-C------CCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHHHHHHhCCCChhHHH
Confidence 77788888888888 7 999999999999998888544444434333 7788888888887654321
Q ss_pred ------------------------------C--CcccHHHH-HHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 037256 108 ------------------------------S--NSYTFPFV-LKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDM 154 (680)
Q Consensus 108 ------------------------------p--~~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~ 154 (680)
| +..+.... .+.+...++++++..++..+.+.+ +.+......|-.+
T Consensus 147 ~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~a 225 (987)
T PRK09782 147 LRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDV 225 (987)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 1 12222222 455666777777888888887776 3334445556666
Q ss_pred HHh-cCChHHHHHHHhcCCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCC-CCHhHHHHH---------------
Q 037256 155 YAK-CGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLL-SDSVTIVSV--------------- 217 (680)
Q Consensus 155 ~~~-~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~l--------------- 217 (680)
|.. .++ ++|..+++.....|...+..+...|.+.|+.++|.++++++...-.. |...++...
T Consensus 226 y~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~ 304 (987)
T PRK09782 226 LLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANY 304 (987)
T ss_pred HHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccch
Confidence 666 355 77777766544557778888888899999999998888887532111 111110000
Q ss_pred ---------------HHH--------------------------------------------------------------
Q 037256 218 ---------------ASA-------------------------------------------------------------- 220 (680)
Q Consensus 218 ---------------l~~-------------------------------------------------------------- 220 (680)
+..
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~ 384 (987)
T PRK09782 305 TVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTW 384 (987)
T ss_pred hhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 011
Q ss_pred -HhccCChHHHHHHHHHHHHc-c-CCCChhHHHHHHHHHHhcCC---HHHHHHH-------------------------H
Q 037256 221 -VGQLGDVLKAQAVHGYAICN-A-FLEDLCIQNSIVAMYARCGN---VEKARLV-------------------------F 269 (680)
Q Consensus 221 -~~~~~~~~~a~~~~~~~~~~-g-~~~~~~~~~~Li~~y~~~g~---~~~A~~~-------------------------f 269 (680)
....|+.++|.+++...... + -..+....+-|+..|.+.+. ..++..+ +
T Consensus 385 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (987)
T PRK09782 385 QLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAI 464 (987)
T ss_pred HHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHH
Confidence 11223344444444444331 1 11233455577778877766 2223222 1
Q ss_pred HhcCC---C--ChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCC
Q 037256 270 DMMEK---R--DLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMK 344 (680)
Q Consensus 270 ~~m~~---~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~ 344 (680)
..... + +...|..+..++.. ++.++|+..+.+.... .|+......+..++...|++++|...++.+... +
T Consensus 465 ~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~ 539 (987)
T PRK09782 465 VRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--D 539 (987)
T ss_pred HHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--C
Confidence 11111 2 55667777777776 7888999988887765 466655444555567899999999999987654 3
Q ss_pred CchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCH-hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037256 345 IDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNV-SSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILS 423 (680)
Q Consensus 345 ~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 423 (680)
|+...+..+...+.+.|++++|.+.|++.....|+. ..+..+.......|++++|+..+++..+ ..|+...+..+..
T Consensus 540 p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~ 617 (987)
T PRK09782 540 MSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARAT 617 (987)
T ss_pred CCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHH
Confidence 444556677888999999999999999985555443 2333333444556999999999999998 6788788999999
Q ss_pred HHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-hHHHHHHHHHHHH-----H
Q 037256 424 ACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM-PLPPND-SVWGALLLACRIH-----G 496 (680)
Q Consensus 424 a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~a~~~~-----~ 496 (680)
++.+.|++++|...+++..... +.+...+..+...+...|++++|++.+++. ...|+. ..+..+-.++... +
T Consensus 618 ~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA 696 (987)
T PRK09782 618 IYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAAT 696 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999999864 456678888889999999999999999987 556654 4555565555544 7
Q ss_pred HHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 037256 497 EIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKGL 542 (680)
Q Consensus 497 ~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 542 (680)
+..++++++++|++.......+++..+..+++.|.+-++..-.-++
T Consensus 697 ~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 697 QHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 8889999999999999999999999999999999998887766544
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.84 E-value=3.8e-18 Score=171.22 Aligned_cols=424 Identities=12% Similarity=0.121 Sum_probs=337.7
Q ss_pred CChHHHHHHhhhccCCCC-CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHH
Q 037256 56 GEPNTARSLFNSIHNDKS-YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHG 134 (680)
Q Consensus 56 g~~~~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 134 (680)
|++.+|.+--.-.-++.| +....-.+-..+.+..+++.....-....+.. +--..+|..+.+.+...|+++.|..++.
T Consensus 62 gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~kerg~~~~al~~y~ 140 (966)
T KOG4626|consen 62 GDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKERGQLQDALALYR 140 (966)
T ss_pred cCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 888888876665555555 22222223344555555555444333333332 2256789999999999999999999999
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCh--hH-HHHHHHHHHhCCCccHHHHHHHHHHHcCCCCC-
Q 037256 135 DIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVRDL--VS-WTVMITAYEQAEKPEEALILFQKTQQEGLLSD- 210 (680)
Q Consensus 135 ~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~~~~--~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~- 210 (680)
.+++.. +.....|..+..++...|+.+.|...|.+..+-|+ .. .+-+...+-..|+.++|...|.+..+. .|.
T Consensus 141 ~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~--qp~f 217 (966)
T KOG4626|consen 141 AAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIET--QPCF 217 (966)
T ss_pred HHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhh--CCce
Confidence 999875 34577889999999999999999999988775444 32 233444455579999999999988775 333
Q ss_pred HhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHH
Q 037256 211 SVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEK---RDLISWNSMLTGY 287 (680)
Q Consensus 211 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~ 287 (680)
.+.|+.+...+-..|+...|.+-|+++++.. +.-...|-.|.+.|...+.++.|...+.+... ...+.+..|...|
T Consensus 218 AiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iY 296 (966)
T KOG4626|consen 218 AIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIY 296 (966)
T ss_pred eeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEE
Confidence 4567888888889999999999999998864 22345677899999999999999999987653 3567788888889
Q ss_pred HHcCChhHHHHHHHHHHhCCCCCC-HhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHH
Q 037256 288 IQNGQASEALLLFDEMQNSDCKPN-PVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTA 366 (680)
Q Consensus 288 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A 366 (680)
-.+|..+-|+..+++..+. .|+ ...|+.+..++-..|+..+|.+.+...+... +......+.|...|...|.+++|
T Consensus 297 yeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A 373 (966)
T KOG4626|consen 297 YEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEA 373 (966)
T ss_pred eccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHH
Confidence 9999999999999999875 555 6789999999999999999999999998875 45677888899999999999999
Q ss_pred HHHHhhcCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhhhc
Q 037256 367 ENMFNDIHPSERN-VSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHI-TFTSILSACSHAGLIDEGRKCFADMTKL 444 (680)
Q Consensus 367 ~~~f~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 444 (680)
..+|.......|. ....|.|...|-+.|+.++|+..+++.++ ++|+.. .|+.+-..|-..|+++.|.+.+.+.+..
T Consensus 374 ~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~ 451 (966)
T KOG4626|consen 374 TRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI 451 (966)
T ss_pred HHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc
Confidence 9999998666666 45789999999999999999999999999 999975 8999999999999999999999998864
Q ss_pred CCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHh-HHHHHHHH
Q 037256 445 SVKPE-VKHYACMVDMLGRAGCLYEAFDMIKQM-PLPPNDS-VWGALLLA 491 (680)
Q Consensus 445 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~a 491 (680)
.|. .+..+.|...|-..|++.+|++-+++. .++||.. .+-.++.+
T Consensus 452 --nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~ 499 (966)
T KOG4626|consen 452 --NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHC 499 (966)
T ss_pred --CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHH
Confidence 454 567888999999999999999999886 7888754 34444433
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=1e-18 Score=184.09 Aligned_cols=292 Identities=12% Similarity=0.080 Sum_probs=139.3
Q ss_pred HhcCChHHHHHHHhcCCCC---ChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCC---HhHHHHHHHHHhccCChHH
Q 037256 156 AKCGQTDDGCKVFDEMSVR---DLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSD---SVTIVSVASAVGQLGDVLK 229 (680)
Q Consensus 156 ~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~~~~~~ 229 (680)
...|++++|...|.++.+. +..+|..+...+.+.|++++|+.+++.+...+..++ ...+..+...+...|+++.
T Consensus 46 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~ 125 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDR 125 (389)
T ss_pred HhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 3444455555555444321 223444455555555555555555555444321111 1223333333344444444
Q ss_pred HHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCC--------hhHHHHHHHHHHHcCChhHHHHHHH
Q 037256 230 AQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRD--------LISWNSMLTGYIQNGQASEALLLFD 301 (680)
Q Consensus 230 a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~--------~~~~~~li~~~~~~g~~~~A~~~~~ 301 (680)
|..++..+.+.. +.+..+++.++..|.+.|++++|.+.|+.+.+.+ ...|..+...+.+.|++++|...|+
T Consensus 126 A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 204 (389)
T PRK11788 126 AEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLK 204 (389)
T ss_pred HHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 444444443321 2233344444444555555555555444443211 1123344555556666666666666
Q ss_pred HHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHh
Q 037256 302 EMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVS 381 (680)
Q Consensus 302 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~ 381 (680)
++.+.. +.+...+..+...+...|++++|.++++.+.+.+......+++.++.+|.+.|++++|.+.++++....|+..
T Consensus 205 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~ 283 (389)
T PRK11788 205 KALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGAD 283 (389)
T ss_pred HHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch
Confidence 665432 2223344445555555556666665555555443222234455555555555566666555555543344444
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc---cCCHHHHHHHHHHhhhcCCCcChH
Q 037256 382 SWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSH---AGLIDEGRKCFADMTKLSVKPEVK 451 (680)
Q Consensus 382 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~---~g~~~~a~~~~~~m~~~~~~p~~~ 451 (680)
.+..++..+.+.|++++|..+++++.+ ..|+..++..++..+.. .|+.+++..++++|.+.++.|++.
T Consensus 284 ~~~~la~~~~~~g~~~~A~~~l~~~l~--~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 284 LLLALAQLLEEQEGPEAAQALLREQLR--RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH--hCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 445555555555555556555555555 34555555555544432 335555555555555554444443
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.83 E-value=2e-16 Score=175.72 Aligned_cols=410 Identities=12% Similarity=-0.010 Sum_probs=291.6
Q ss_pred CChHHHHHHhhhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHH
Q 037256 56 GEPNTARSLFNSIHNDKSYSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGD 135 (680)
Q Consensus 56 g~~~~A~~~f~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 135 (680)
|+++.|++.|+......|+...|..+..+|.+.|++++|++.+++..+..+. +...+..+..++...|++++|..-+..
T Consensus 141 ~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~~lg~~~eA~~~~~~ 219 (615)
T TIGR00990 141 KDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYDGLGKYADALLDLTA 219 (615)
T ss_pred CCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999999888888888888999999999999999999998876422 455788888889999999999888876
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCH-hHH
Q 037256 136 IIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDS-VTI 214 (680)
Q Consensus 136 ~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~ 214 (680)
+...+-..+.. ...++.-+.+......+...++.-+ .+..++..+.. |........+..-+..-.+ ..++. ..+
T Consensus 220 ~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 294 (615)
T TIGR00990 220 SCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPAGLEDSNE--LDEETGNGQ 294 (615)
T ss_pred HHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchhhhhcccc--cccccccch
Confidence 65543222222 1222222222222344444444432 23334443333 3232223322222221111 11111 111
Q ss_pred HHHHHH---HhccCChHHHHHHHHHHHHcc--CCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHH
Q 037256 215 VSVASA---VGQLGDVLKAQAVHGYAICNA--FLEDLCIQNSIVAMYARCGNVEKARLVFDMMEK--R-DLISWNSMLTG 286 (680)
Q Consensus 215 ~~ll~~---~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~ 286 (680)
..+... ....+++++|.+.++.+++.+ .+.....++.+...|...|++++|...|++..+ | +..+|..+...
T Consensus 295 ~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~ 374 (615)
T TIGR00990 295 LQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASM 374 (615)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 111111 123467889999999998865 233456788888899999999999999998865 3 35678888889
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHH
Q 037256 287 YIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTA 366 (680)
Q Consensus 287 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A 366 (680)
+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++..++.. +.+...+..+..++.+.|++++|
T Consensus 375 ~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA 452 (615)
T TIGR00990 375 NLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASS 452 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHH
Confidence 999999999999999998763 4456788888888999999999999999998875 45677788889999999999999
Q ss_pred HHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-H-------HHHHHHHHHccCCHHHHHHH
Q 037256 367 ENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHI-T-------FTSILSACSHAGLIDEGRKC 437 (680)
Q Consensus 367 ~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t-------~~~ll~a~~~~g~~~~a~~~ 437 (680)
...|++.....| +...|+.+...+...|++++|++.|++..+ +.|+.. + +...+..+...|++++|.++
T Consensus 453 ~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~--l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~ 530 (615)
T TIGR00990 453 MATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE--LEKETKPMYMNVLPLINKALALFQWKQDFIEAENL 530 (615)
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 999998865555 477889999999999999999999999988 444321 1 12222233446999999999
Q ss_pred HHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256 438 FADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM 476 (680)
Q Consensus 438 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 476 (680)
+++..+.. +.+...+..+...+.+.|++++|.++|++.
T Consensus 531 ~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A 568 (615)
T TIGR00990 531 CEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERA 568 (615)
T ss_pred HHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99987754 334456888999999999999999999876
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.82 E-value=2.6e-16 Score=174.84 Aligned_cols=413 Identities=12% Similarity=-0.002 Sum_probs=258.2
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhHHHHHHHHHHhCCC
Q 037256 115 FVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSV---RDLVSWTVMITAYEQAEK 191 (680)
Q Consensus 115 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~ 191 (680)
.....+.+.|++++|...|...++. .|+...|..+..+|.+.|++++|++.++...+ .+...|..+..+|...|+
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~ 209 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGK 209 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence 4445566677777777777777664 45666777777777777787777777776543 245567777777788888
Q ss_pred ccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 037256 192 PEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDM 271 (680)
Q Consensus 192 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~ 271 (680)
+++|+..|......+-. +......++..... ..+........+.. +++...+..+.. |......+.+..-++.
T Consensus 210 ~~eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 282 (615)
T TIGR00990 210 YADALLDLTASCIIDGF-RNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGLED 282 (615)
T ss_pred HHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhhhc
Confidence 88887777655443211 11111111111111 11122222222221 222222222222 2211111111111111
Q ss_pred cCCCCh---hHHHHHHHH---HHHcCChhHHHHHHHHHHhCC-CCC-CHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCC
Q 037256 272 MEKRDL---ISWNSMLTG---YIQNGQASEALLLFDEMQNSD-CKP-NPVTALILVSACTYLGSRQLGRKFHGYIINSNM 343 (680)
Q Consensus 272 m~~~~~---~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g-~~p-~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~ 343 (680)
..+.+. ..+..+... ....+++++|++.|++..+.+ ..| +...+..+...+...|++++|...++..++..
T Consensus 283 ~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~- 361 (615)
T TIGR00990 283 SNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD- 361 (615)
T ss_pred ccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-
Confidence 111111 111111111 123467888888888887654 233 33456666666777888888888888887654
Q ss_pred CCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHH
Q 037256 344 KIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH-ITFTSI 421 (680)
Q Consensus 344 ~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~l 421 (680)
+.+...+..+...|...|++++|...|++.....| +...|..+...|...|++++|+..|++..+ +.|+. ..+..+
T Consensus 362 P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~~~~~l 439 (615)
T TIGR00990 362 PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID--LDPDFIFSHIQL 439 (615)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCccCHHHHHHH
Confidence 33456777788888888888888888888755544 467788888888888889999888888887 55654 466667
Q ss_pred HHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-hHHH------HHHHHHH
Q 037256 422 LSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM-PLPPND-SVWG------ALLLACR 493 (680)
Q Consensus 422 l~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~------~ll~a~~ 493 (680)
...+.+.|++++|...|++..+.. +.+...|+.+...+...|++++|++.|++. .+.|+. ..+. .....+.
T Consensus 440 a~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~ 518 (615)
T TIGR00990 440 GVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALF 518 (615)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHH
Confidence 777888888999988888887642 445677888888888889999998888875 444431 1111 1111111
Q ss_pred H---H---HHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 037256 494 I---H---GEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNK 540 (680)
Q Consensus 494 ~---~---~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 540 (680)
. . +...++++++++|++...+..++.+|...|++++|.+.+++..+.
T Consensus 519 ~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 519 QWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 1 1 667778888899999889999999999999999999999998753
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.82 E-value=7e-16 Score=174.56 Aligned_cols=394 Identities=11% Similarity=0.039 Sum_probs=216.5
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 037256 78 WNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAK 157 (680)
Q Consensus 78 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~ 157 (680)
-.-.+......|+.++|+++|.+..... +.+...+..+..++...|++++|.++++..++.. +.+...+..+...+..
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3444555566667777776666665421 2233345566666666666666666666666553 2334445555555566
Q ss_pred cCChHHHHHHHhcCCC--C-ChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHH
Q 037256 158 CGQTDDGCKVFDEMSV--R-DLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVH 234 (680)
Q Consensus 158 ~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 234 (680)
.|+.++|...+++... | +.. |..+...+...|++++|+..++++.+.. |
T Consensus 96 ~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~--P------------------------- 147 (765)
T PRK10049 96 AGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA--P------------------------- 147 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC--C-------------------------
Confidence 6666666666555432 1 333 5555555555555666655555555432 2
Q ss_pred HHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChh--------HHHHHHHHH-----HHcCCh---hHHHH
Q 037256 235 GYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLI--------SWNSMLTGY-----IQNGQA---SEALL 298 (680)
Q Consensus 235 ~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~--------~~~~li~~~-----~~~g~~---~~A~~ 298 (680)
.+...+..+...+.+.|..+.|.+.++.... ++. ....++... ...+++ ++|++
T Consensus 148 ---------~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~ 217 (765)
T PRK10049 148 ---------QTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALA 217 (765)
T ss_pred ---------CCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHH
Confidence 2233333344455555555555555555443 111 111111111 112223 66777
Q ss_pred HHHHHHhC-CCCCCHh-hHH----HHHHHHhhhcchHHHHHHHHHHHHcCCC-CchHHHHHHHHHHHHcCCHHHHHHHHh
Q 037256 299 LFDEMQNS-DCKPNPV-TAL----ILVSACTYLGSRQLGRKFHGYIINSNMK-IDATLRNAVMDMYAKCGDLDTAENMFN 371 (680)
Q Consensus 299 ~~~~m~~~-g~~p~~~-t~~----~ll~a~~~~g~~~~a~~i~~~~~~~~~~-~~~~~~~~li~~y~k~g~~~~A~~~f~ 371 (680)
.++.+.+. ...|+.. .+. ..+.++...|+.++|...++.+.+.+.+ |+ .....+..+|...|++++|+..|+
T Consensus 218 ~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~ 296 (765)
T PRK10049 218 QYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILT 296 (765)
T ss_pred HHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHH
Confidence 77777643 1222221 111 1123344556777777777777665422 21 112224566777777777777777
Q ss_pred hcCCCCCC-----HhHHHHHHHHHHhcCChHHHHHHHHHHHHcC-----------CCCCH---HHHHHHHHHHHccCCHH
Q 037256 372 DIHPSERN-----VSSWNVLIAGYGMHGHGRKALEFFSQMLEEG-----------VKPDH---ITFTSILSACSHAGLID 432 (680)
Q Consensus 372 ~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----------~~p~~---~t~~~ll~a~~~~g~~~ 432 (680)
++....|. ...+..+..++...|++++|.++++++.... -.|+. ..+..+...+...|+++
T Consensus 297 ~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~ 376 (765)
T PRK10049 297 ELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLP 376 (765)
T ss_pred HHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHH
Confidence 76433332 2334555556677777777777777776631 01221 12334455666677777
Q ss_pred HHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHHHHHHHHHHccCCCCCc
Q 037256 433 EGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEIAANYLFQLEPEHTG 512 (680)
Q Consensus 433 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~~~~~~l~p~~~~ 512 (680)
+|++.++++.... +.+...+..+...+...|++++|++.+++ +++++|+++.
T Consensus 377 eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~---------------------------al~l~Pd~~~ 428 (765)
T PRK10049 377 QAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKK---------------------------AEVLEPRNIN 428 (765)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHH---------------------------HHhhCCCChH
Confidence 7777777766542 34455666667777777777777666655 4456666666
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 037256 513 YFVLMSNIYAASNKWREVGKLREDMKNK 540 (680)
Q Consensus 513 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 540 (680)
.+..++..+...|+|++|+++++.+.+.
T Consensus 429 l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 429 LEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 7777777777777777777777776653
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.81 E-value=4e-16 Score=172.76 Aligned_cols=347 Identities=11% Similarity=0.004 Sum_probs=227.4
Q ss_pred CChHHHHHHhhhccCCCC----CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHH
Q 037256 56 GEPNTARSLFNSIHNDKS----YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKV 131 (680)
Q Consensus 56 g~~~~A~~~f~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 131 (680)
.+++.---.|...++..- +..-.-.++..+.+.|++++|+.+++......+. +...+..++.+....|++++|.+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~ 97 (656)
T PRK15174 19 EDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQ 97 (656)
T ss_pred hchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHH
Confidence 555555556666554411 2223345667788889999999999888876444 34445555566677889999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCC
Q 037256 132 VHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSV---RDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLL 208 (680)
Q Consensus 132 ~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 208 (680)
.++.+++.. +.+...+..+...+...|++++|...|++... .+...|..+...+.+.|++++|...++.+......
T Consensus 98 ~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~ 176 (656)
T PRK15174 98 VVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP 176 (656)
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC
Confidence 999888875 44566777788888888999999888887653 35667888888888889999888888877665322
Q ss_pred CCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHH
Q 037256 209 SDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEK---RDLISWNSMLT 285 (680)
Q Consensus 209 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~ 285 (680)
+...+.. +..+...|++++|...+..+++....++......+...+.+.|++++|...|++..+ .+...+..+..
T Consensus 177 -~~~a~~~-~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~ 254 (656)
T PRK15174 177 -RGDMIAT-CLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGL 254 (656)
T ss_pred -CHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 2222222 234666788888888877776654334444445556667777777777777777654 24566666777
Q ss_pred HHHHcCChhH----HHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcC
Q 037256 286 GYIQNGQASE----ALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCG 361 (680)
Q Consensus 286 ~~~~~g~~~~----A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g 361 (680)
.|.+.|++++ |+..|++..+.. +.+...+..+...+...|++++|...++.+.+.. +.+..+...+..+|.+.|
T Consensus 255 ~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G 332 (656)
T PRK15174 255 AYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVG 332 (656)
T ss_pred HHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC
Confidence 7777777765 677777776542 2234455666666666666666666666666554 334455555666666666
Q ss_pred CHHHHHHHHhhcCCCCCCHhH-HHHHHHHHHhcCChHHHHHHHHHHHH
Q 037256 362 DLDTAENMFNDIHPSERNVSS-WNVLIAGYGMHGHGRKALEFFSQMLE 408 (680)
Q Consensus 362 ~~~~A~~~f~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~ 408 (680)
++++|.+.|+++....|+... +..+..++...|+.++|.+.|++..+
T Consensus 333 ~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 333 QYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666666666666444444332 23334556666666666666666665
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.79 E-value=9.8e-16 Score=169.69 Aligned_cols=317 Identities=13% Similarity=0.052 Sum_probs=171.6
Q ss_pred HHHHHhcCChHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChH
Q 037256 152 VDMYAKCGQTDDGCKVFDEMSV---RDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVL 228 (680)
Q Consensus 152 i~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 228 (680)
+..+.+.|++++|+.+++.... .+...+..++.+....|++++|++.|+++.... +.+...+..+...+...|+.+
T Consensus 49 ~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~ 127 (656)
T PRK15174 49 AIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYA 127 (656)
T ss_pred HHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHH
Confidence 3444556666666666655432 233444455555556666666666666665542 223344555555556666666
Q ss_pred HHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 037256 229 KAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEK--R-DLISWNSMLTGYIQNGQASEALLLFDEMQN 305 (680)
Q Consensus 229 ~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 305 (680)
+|...+..+++.. +.+...+..+...|...|+.++|...++.+.. | +...+..+ ..+.+.|++++|...++++.+
T Consensus 128 ~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~ 205 (656)
T PRK15174 128 TVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLARALLP 205 (656)
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHh
Confidence 6666666665542 33444555566666666666666666655432 2 22222222 235556666666666666554
Q ss_pred CCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHH----HHHHHhhcCCCCCC-H
Q 037256 306 SDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDT----AENMFNDIHPSERN-V 380 (680)
Q Consensus 306 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~----A~~~f~~~~~~~~~-~ 380 (680)
....++......+..++...|++++|...+..+.+.. +.+...+..+..+|.+.|++++ |...|++.....|+ .
T Consensus 206 ~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~ 284 (656)
T PRK15174 206 FFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNV 284 (656)
T ss_pred cCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCH
Confidence 4322333333344455556666666666666665543 3345555556666666666654 56666665444333 4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcCh-HHHHHHHH
Q 037256 381 SSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHI-TFTSILSACSHAGLIDEGRKCFADMTKLSVKPEV-KHYACMVD 458 (680)
Q Consensus 381 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~ 458 (680)
..+..+...+...|++++|+..+++..+ ..|+.. .+..+..++...|++++|...|+.+.+.+ |+. ..+..+..
T Consensus 285 ~a~~~lg~~l~~~g~~~eA~~~l~~al~--l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~ 360 (656)
T PRK15174 285 RIVTLYADALIRTGQNEKAIPLLQQSLA--THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAA 360 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHH
Confidence 4556666666666666666666666665 344432 44445555666666666666666655432 222 22233345
Q ss_pred HHHhcCCHHHHHHHHHhC
Q 037256 459 MLGRAGCLYEAFDMIKQM 476 (680)
Q Consensus 459 ~~~~~g~~~~A~~~~~~m 476 (680)
++...|+.++|.+.+++.
T Consensus 361 al~~~G~~deA~~~l~~a 378 (656)
T PRK15174 361 ALLQAGKTSEAESVFEHY 378 (656)
T ss_pred HHHHCCCHHHHHHHHHHH
Confidence 556666666666666554
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.79 E-value=7.1e-16 Score=174.47 Aligned_cols=407 Identities=10% Similarity=-0.008 Sum_probs=245.4
Q ss_pred hhhhHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCCCC-CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCccc
Q 037256 34 TSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKS-YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYT 112 (680)
Q Consensus 34 ~~~~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 112 (680)
++-..+-.+..... . |+.++|++++.......| +...+..+...+...|++++|.++|++..+.. +.+...
T Consensus 14 ~~~~~~d~~~ia~~-~------g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a 85 (765)
T PRK10049 14 SNNQIADWLQIALW-A------GQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDY 85 (765)
T ss_pred CHHHHHHHHHHHHH-c------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 55556666777777 7 999999999999876444 55569999999999999999999999988763 224556
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-ChhHHHHHHHHHHhC
Q 037256 113 FPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSV--R-DLVSWTVMITAYEQA 189 (680)
Q Consensus 113 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~ 189 (680)
+..+...+...|+.++|...++.+++.. +.+.. +..+..++...|+.++|+..++++.. | +...+..+...+...
T Consensus 86 ~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~ 163 (765)
T PRK10049 86 QRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNN 163 (765)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 6777788889999999999999999874 44566 88888999999999999999998864 3 556677788889999
Q ss_pred CCccHHHHHHHHHHHcCCCCCHh------HHHHHHHHHhcc-----CCh---HHHHHHHHHHHHc-cCCCChhHHHHHHH
Q 037256 190 EKPEEALILFQKTQQEGLLSDSV------TIVSVASAVGQL-----GDV---LKAQAVHGYAICN-AFLEDLCIQNSIVA 254 (680)
Q Consensus 190 g~~~~A~~~~~~m~~~g~~p~~~------t~~~ll~~~~~~-----~~~---~~a~~~~~~~~~~-g~~~~~~~~~~Li~ 254 (680)
+..++|++.++.... .|+.. ....+++..... +++ ++|.+.++.+++. ...|+.....
T Consensus 164 ~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~---- 236 (765)
T PRK10049 164 RLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADY---- 236 (765)
T ss_pred CChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHH----
Confidence 999999999886653 23310 011111111111 112 3333344433322 1111110000
Q ss_pred HHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CCHhhHHHHHHHHhhhcchHHHHH
Q 037256 255 MYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCK-PNPVTALILVSACTYLGSRQLGRK 333 (680)
Q Consensus 255 ~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~ 333 (680)
.......+..+...|++++|+..|+++.+.+.+ |+. ....+..++...|++++|..
T Consensus 237 ----------------------~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~ 293 (765)
T PRK10049 237 ----------------------QRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQS 293 (765)
T ss_pred ----------------------HHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHH
Confidence 000001122233445555555555555544321 221 11113444555555555555
Q ss_pred HHHHHHHcCCCC---chHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-------------C---HhHHHHHHHHHHhcC
Q 037256 334 FHGYIINSNMKI---DATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-------------N---VSSWNVLIAGYGMHG 394 (680)
Q Consensus 334 i~~~~~~~~~~~---~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-------------~---~~~~~~li~~~~~~g 394 (680)
.++.+.+..... .......+..++.+.|++++|.++++.+....| + ...+..+...+...|
T Consensus 294 ~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g 373 (765)
T PRK10049 294 ILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSN 373 (765)
T ss_pred HHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcC
Confidence 555554432110 122333444455666666666666665533322 1 123344555666677
Q ss_pred ChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHH
Q 037256 395 HGRKALEFFSQMLEEGVKPDH-ITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMI 473 (680)
Q Consensus 395 ~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 473 (680)
+.++|+++++++... .|+. ..+..+...+...|++++|++.+++..... +-+...+..++..+.+.|++++|+.++
T Consensus 374 ~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~ 450 (765)
T PRK10049 374 DLPQAEMRARELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLT 450 (765)
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHH
Confidence 777777777777663 3433 356666666677777777777777666542 222445555555666777777777777
Q ss_pred HhC-CCCCCHh
Q 037256 474 KQM-PLPPNDS 483 (680)
Q Consensus 474 ~~m-~~~p~~~ 483 (680)
+++ ...|+..
T Consensus 451 ~~ll~~~Pd~~ 461 (765)
T PRK10049 451 DDVVAREPQDP 461 (765)
T ss_pred HHHHHhCCCCH
Confidence 665 3344433
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.78 E-value=1.2e-14 Score=161.27 Aligned_cols=430 Identities=12% Similarity=0.064 Sum_probs=287.3
Q ss_pred CChHHHHHHhhhccCCCCCcc-hHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCccc-HHHH--HHHHhccCChHHHHH
Q 037256 56 GEPNTARSLFNSIHNDKSYSF-LWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYT-FPFV--LKACASNSLILEGKV 131 (680)
Q Consensus 56 g~~~~A~~~f~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~l--l~~~~~~~~~~~a~~ 131 (680)
|+++.|+..|++..+..|+.. ....++..+...|+.++|+..+++.. .|+... +..+ ...+...|++++|.+
T Consensus 48 Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdyd~Aie 123 (822)
T PRK14574 48 GDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRWDQALA 123 (822)
T ss_pred CCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999888642 33388888999999999999999987 333332 3333 446778899999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHh--CCCccHHHHHHHHHHHcCCCC
Q 037256 132 VHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQ--AEKPEEALILFQKTQQEGLLS 209 (680)
Q Consensus 132 ~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p 209 (680)
+++.+++.. +.++.++..++..|...++.++|++.++++...+......+..+|.. .++..+|++.++++.+.. +-
T Consensus 124 ly~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~ 201 (822)
T PRK14574 124 LWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PT 201 (822)
T ss_pred HHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CC
Confidence 999999886 44567777888899999999999999999876544433334444444 556656999999998873 33
Q ss_pred CHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 037256 210 DSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQ 289 (680)
Q Consensus 210 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~ 289 (680)
+...+.....++.+.|-...|.++... .|+.++-..+... +.+.|.+..+....++. ..
T Consensus 202 n~e~~~~~~~~l~~~~~~~~a~~l~~~------~p~~f~~~~~~~l-----~~~~~a~~vr~a~~~~~----------~~ 260 (822)
T PRK14574 202 SEEVLKNHLEILQRNRIVEPALRLAKE------NPNLVSAEHYRQL-----ERDAAAEQVRMAVLPTR----------SE 260 (822)
T ss_pred CHHHHHHHHHHHHHcCCcHHHHHHHHh------CccccCHHHHHHH-----HHHHHHHHHhhcccccc----------cc
Confidence 455566777777777777777765543 2222211111100 11112222211110000 00
Q ss_pred cCC---hhHHHHHHHHHHhC-CCCCCH-h----hHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHc
Q 037256 290 NGQ---ASEALLLFDEMQNS-DCKPNP-V----TALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKC 360 (680)
Q Consensus 290 ~g~---~~~A~~~~~~m~~~-g~~p~~-~----t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~ 360 (680)
.++ .+.|+.-++.+... +-.|.. . ...--+-++...++..++.+.++.+...+.+....+--++.++|...
T Consensus 261 ~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~ 340 (822)
T PRK14574 261 TERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDR 340 (822)
T ss_pred hhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhc
Confidence 111 34455555555431 222322 1 11233456777888888888888888888776677888889999999
Q ss_pred CCHHHHHHHHhhcCCCC-------CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC-------------CCCCHH-HHH
Q 037256 361 GDLDTAENMFNDIHPSE-------RNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEG-------------VKPDHI-TFT 419 (680)
Q Consensus 361 g~~~~A~~~f~~~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-------------~~p~~~-t~~ 419 (680)
+++++|+.+|+.+.... ++......|.-+|...+++++|..+++++.+.- ..||-. .+.
T Consensus 341 ~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~ 420 (822)
T PRK14574 341 RLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQT 420 (822)
T ss_pred CCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHH
Confidence 99999999999874332 123335678888899999999999999998731 112333 334
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHhHHHHHH-HHHHHH--
Q 037256 420 SILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM-PLPPNDSVWGALL-LACRIH-- 495 (680)
Q Consensus 420 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll-~a~~~~-- 495 (680)
.++..+...|++.+|++.++.+.... +-|......+.+.+...|++.+|++.++.. .+.|+......-. .+....
T Consensus 421 l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e 499 (822)
T PRK14574 421 LLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQE 499 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhh
Confidence 45667889999999999999997764 668888899999999999999999999776 4556543322211 111111
Q ss_pred ---HHHHHHHHHccCCCCCch
Q 037256 496 ---GEIAANYLFQLEPEHTGY 513 (680)
Q Consensus 496 ---~~~~~~~~~~l~p~~~~~ 513 (680)
++...+.+++..|+++.+
T Consensus 500 ~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 500 WHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred HHHHHHHHHHHHhhCCCchhH
Confidence 556667777778877643
No 25
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.75 E-value=1.3e-13 Score=146.49 Aligned_cols=476 Identities=10% Similarity=0.054 Sum_probs=339.8
Q ss_pred hHHHHHHhhhccCCCCCcchHHHHHHHH--HhCCCchHHHHHHHHHHhCC--CCCCcccHHHHHHHHhccCChHHHHHHH
Q 037256 58 PNTARSLFNSIHNDKSYSFLWNTMIRAY--ANNGHCVETLELYSTMRRSG--ISSNSYTFPFVLKACASNSLILEGKVVH 133 (680)
Q Consensus 58 ~~~A~~~f~~~~~~~p~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 133 (680)
++.|.+.|....+..|+.+. -.+..++ ...+++..|+.+|....... .+||.. ..+-..+.+.++.+.|+..|
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil-~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNIL-ALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchH-HHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHH
Confidence 59999999999998885432 2344444 34689999999999976643 344443 22335567889999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhc---CChHHHHHHHhcCC---CCChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCC
Q 037256 134 GDIIRTGFLSDSYVQAALVDMYAKC---GQTDDGCKVFDEMS---VRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGL 207 (680)
Q Consensus 134 ~~~~~~g~~~~~~~~~~Li~~~~~~---g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 207 (680)
...++... .++..+-.|.-.-... ..+..+..++...- ..|++..+.|...|.-.|++..+..+..-+.....
T Consensus 223 ~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~ 301 (1018)
T KOG2002|consen 223 ERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTE 301 (1018)
T ss_pred HHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh
Confidence 99987642 2333333332222222 23445555555442 35889999999999999999999999998876531
Q ss_pred C--CCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHH
Q 037256 208 L--SDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEK---RDLISWNS 282 (680)
Q Consensus 208 ~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~ 282 (680)
. .-...|-.+.+++-..|++++|..+|-+..+.....-+..+-.|..+|.+.|+++.|...|+.+.+ .+..+...
T Consensus 302 ~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~i 381 (1018)
T KOG2002|consen 302 NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKI 381 (1018)
T ss_pred hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHH
Confidence 1 123457788999999999999999998888765333344456788999999999999999999875 24556666
Q ss_pred HHHHHHHcC----ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHH----HHcCCCCchHHHHHHH
Q 037256 283 MLTGYIQNG----QASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYI----INSNMKIDATLRNAVM 354 (680)
Q Consensus 283 li~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~----~~~~~~~~~~~~~~li 354 (680)
|...|+..+ ..+.|..++.+..+.- +-|...|..+...+-. ++.......+..+ ...+-.+.+.+.|.+.
T Consensus 382 LG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNva 459 (1018)
T KOG2002|consen 382 LGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVA 459 (1018)
T ss_pred HHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHH
Confidence 667777665 4577777777776543 4456666666555543 3333335555443 3455568889999999
Q ss_pred HHHHHcCCHHHHHHHHhhcCCC-----CCCH------hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHH
Q 037256 355 DMYAKCGDLDTAENMFNDIHPS-----ERNV------SSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHI-TFTSIL 422 (680)
Q Consensus 355 ~~y~k~g~~~~A~~~f~~~~~~-----~~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll 422 (680)
..+...|++++|...|...... .++. .+--.+...+-..++.+.|.+.|..+.. ..|+.+ .|..++
T Consensus 460 slhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk--ehp~YId~ylRl~ 537 (1018)
T KOG2002|consen 460 SLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK--EHPGYIDAYLRLG 537 (1018)
T ss_pred HHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH--HCchhHHHHHHhh
Confidence 9999999999999999987433 2222 2223355566677899999999999998 568776 565555
Q ss_pred HHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHhHHHHHHHHHHHH---
Q 037256 423 SACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM----PLPPNDSVWGALLLACRIH--- 495 (680)
Q Consensus 423 ~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~a~~~~--- 495 (680)
...-..+...+|...+....... ..++..++.+.+.+.+...+..|.+-|+.. ...+|+++.-+|-+-|...
T Consensus 538 ~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~ 616 (1018)
T KOG2002|consen 538 CMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHN 616 (1018)
T ss_pred HHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcc
Confidence 33345678889999999888752 455566666777888888888787755443 3447888877777766543
Q ss_pred --------------HHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 037256 496 --------------GEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKGL 542 (680)
Q Consensus 496 --------------~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 542 (680)
|...+.+++..+|.|.-+-..++-+++..|+|.+|..+|.+.++...
T Consensus 617 ~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 617 PSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS 677 (1018)
T ss_pred cccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh
Confidence 34445677889999988888999999999999999999999998655
No 26
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.73 E-value=5.8e-14 Score=135.69 Aligned_cols=262 Identities=18% Similarity=0.185 Sum_probs=165.8
Q ss_pred HHhhhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCC
Q 037256 63 SLFNSIHNDKSYSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFL 142 (680)
Q Consensus 63 ~~f~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 142 (680)
-+|+..|+ ...++..||.++++-...+.|.++|++......+.+..+||.+|.+..- ..++.+..+|+.....
T Consensus 198 L~~E~~PK---T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 198 LLFETLPK---TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMT 270 (625)
T ss_pred HHHhhcCC---CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcC
Confidence 44444443 4567899999999999999999999999888888899999999987543 3348889999999999
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHhc----CC----CCChhHHHHHHHHHHhCCCccH-HHHHHHHHHH----cCCC-
Q 037256 143 SDSYVQAALVDMYAKCGQTDDGCKVFDE----MS----VRDLVSWTVMITAYEQAEKPEE-ALILFQKTQQ----EGLL- 208 (680)
Q Consensus 143 ~~~~~~~~Li~~~~~~g~~~~A~~~f~~----~~----~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~----~g~~- 208 (680)
||..++|+++.+.++.|+++.|++.+-+ |+ +|...+|..+|..+.+.+++.+ |..+..+... +.++
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp 350 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKP 350 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccC
Confidence 9999999999999999998887765322 21 3444455555555554444422 2222222221 1111
Q ss_pred ---CCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHH
Q 037256 209 ---SDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLT 285 (680)
Q Consensus 209 ---p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~ 285 (680)
.|...|...+..|.+..|.+.|.++++...... . |...|.. + ...+-|..+..
T Consensus 351 ~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~-N------------~~~ig~~------~-----~~~fYyr~~~~ 406 (625)
T KOG4422|consen 351 ITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGD-N------------WKFIGPD------Q-----HRNFYYRKFFD 406 (625)
T ss_pred CCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-c------------hhhcChH------H-----HHHHHHHHHHH
Confidence 122334444444554455555544444332110 0 0000000 0 11233555666
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 037256 286 GYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMD 355 (680)
Q Consensus 286 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 355 (680)
..++....+.-+..|+.|.-+-+-|+..+...++++....+.++...+++..++..|...+.....-++.
T Consensus 407 licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~ 476 (625)
T KOG4422|consen 407 LICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILM 476 (625)
T ss_pred HHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 7777778888888888888777788888888888888888888888888888877775444444333333
No 27
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.73 E-value=8.7e-14 Score=147.73 Aligned_cols=490 Identities=16% Similarity=0.164 Sum_probs=254.6
Q ss_pred hhhhHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCCCC-CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCC--CCc
Q 037256 34 TSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKS-YSFLWNTMIRAYANNGHCVETLELYSTMRRSGIS--SNS 110 (680)
Q Consensus 34 ~~~~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~ 110 (680)
|+...++++.++.- -..+-....+..+...+...-...| |++..|.|.+-|.-.|+++.++.+...+...... .-.
T Consensus 229 dp~~v~alv~L~~~-~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~a 307 (1018)
T KOG2002|consen 229 DPTCVSALVALGEV-DLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKA 307 (1018)
T ss_pred ChhhHHHHHHHHHH-HHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHH
Confidence 55555555554332 2222223445555555555544433 5666666666666667777776666666543210 112
Q ss_pred ccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchh--HHHHHHHHHHhcCChHHHHHHHhcCCC---CChhHHHHHHHH
Q 037256 111 YTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSY--VQAALVDMYAKCGQTDDGCKVFDEMSV---RDLVSWTVMITA 185 (680)
Q Consensus 111 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~Li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~ 185 (680)
..|-.+.+++-..|++++|...|.+..+.. +|.+ .+-.|..+|.+.|+++.|...|+.+.. .+..+-..|...
T Consensus 308 es~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~L 385 (1018)
T KOG2002|consen 308 ESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCL 385 (1018)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhH
Confidence 335566666666777777777666555543 3332 233456667777777777666666542 233444455555
Q ss_pred HHhCC----CccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHH----HHccCCCChhHHHHHHHHHH
Q 037256 186 YEQAE----KPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYA----ICNAFLEDLCIQNSIVAMYA 257 (680)
Q Consensus 186 ~~~~g----~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~----~~~g~~~~~~~~~~Li~~y~ 257 (680)
|+..+ ..+.|..++.+..+.- +.|...|..+...+-. ++.......+..+ ...+..+.+.+.|.+...+.
T Consensus 386 ya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf 463 (1018)
T KOG2002|consen 386 YAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHF 463 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHH
Confidence 55543 2344444444443321 2344444444443332 3333334443332 23444455666666666666
Q ss_pred hcCCHHHHHHHHHhcCCC-------Ch------h-HHHHHHHHHHHcC--------------------------------
Q 037256 258 RCGNVEKARLVFDMMEKR-------DL------I-SWNSMLTGYIQNG-------------------------------- 291 (680)
Q Consensus 258 ~~g~~~~A~~~f~~m~~~-------~~------~-~~~~li~~~~~~g-------------------------------- 291 (680)
..|++++|...|+..... |. . -|| +...+-..+
T Consensus 464 ~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN-larl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~ 542 (1018)
T KOG2002|consen 464 RLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN-LARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARD 542 (1018)
T ss_pred HhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH-HHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHh
Confidence 666666666666654321 11 0 111 222222333
Q ss_pred --ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcC-CCCchHHHHHHHHHHHH---------
Q 037256 292 --QASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSN-MKIDATLRNAVMDMYAK--------- 359 (680)
Q Consensus 292 --~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~-~~~~~~~~~~li~~y~k--------- 359 (680)
...+|...+++..... ..++..++.+...+.....+..|..-+..+.+.- ..+|+.+.-+|.+.|..
T Consensus 543 k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ 621 (1018)
T KOG2002|consen 543 KNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNP 621 (1018)
T ss_pred ccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccCh
Confidence 4445555555544321 2222222223333444444444444444333321 12455555555554432
Q ss_pred ---cCCHHHHHHHHhhcCCC-CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 037256 360 ---CGDLDTAENMFNDIHPS-ERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGR 435 (680)
Q Consensus 360 ---~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 435 (680)
.+..++|.++|.++... ..|..+-|-+.-.++..|++.+|..+|.+..+... -+..+|..+..+|...|++..|.
T Consensus 622 ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AI 700 (1018)
T KOG2002|consen 622 EKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAI 700 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHH
Confidence 23456677777666444 34566666677777777777777777777776532 23445666777777777777777
Q ss_pred HHHHHhhhc-CCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHhH--HHHHHHHHHHHHHHHHHHHHccCCCCC
Q 037256 436 KCFADMTKL-SVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM-PLPPNDSV--WGALLLACRIHGEIAANYLFQLEPEHT 511 (680)
Q Consensus 436 ~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~--~~~ll~a~~~~~~~~~~~~~~l~p~~~ 511 (680)
++|+...+. .-.-+..+..+|..++.++|.+.+|.+..... ...|...+ +|..+-. .+..+..++..+.
T Consensus 701 qmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~-----kkla~s~lr~~k~-- 773 (1018)
T KOG2002|consen 701 QMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVL-----KKLAESILRLEKR-- 773 (1018)
T ss_pred HHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHH-----HHHHHHHHhcccc--
Confidence 777776665 44555666677777777777777776665544 33343222 2221111 1222233333331
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 037256 512 GYFVLMSNIYAASNKWREVGKLREDMKNKGL 542 (680)
Q Consensus 512 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 542 (680)
.+=.+....+..++|.++|..|...+-
T Consensus 774 ----t~eev~~a~~~le~a~r~F~~ls~~~d 800 (1018)
T KOG2002|consen 774 ----TLEEVLEAVKELEEARRLFTELSKNGD 800 (1018)
T ss_pred ----cHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 222334456678999999999987654
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.69 E-value=4e-13 Score=130.03 Aligned_cols=411 Identities=13% Similarity=0.119 Sum_probs=259.0
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHH--hccCChHHH-HHHHHHHHHhCCCCchhHHHHH
Q 037256 75 SFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKAC--ASNSLILEG-KVVHGDIIRTGFLSDSYVQAAL 151 (680)
Q Consensus 75 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~--~~~~~~~~a-~~~~~~~~~~g~~~~~~~~~~L 151 (680)
+++=|.|+.. ..+|..+++.-+|+.|++.|+..+...-..|++.. ....++.-+ .+.|-.|.+.|- .+..+|
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E-~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGE-DSTSSW--- 190 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccc-cccccc---
Confidence 4566776664 45688999999999999999877776666666543 233333322 234445555552 233333
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHH
Q 037256 152 VDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQ 231 (680)
Q Consensus 152 i~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 231 (680)
|.|.+.+ ++-+...+...+|.+||.+.++-...+.|.++|++-.....+.+..+|+.++.+.+-. .++
T Consensus 191 -----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K 258 (625)
T KOG4422|consen 191 -----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGK 258 (625)
T ss_pred -----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccH
Confidence 4566544 4445555677899999999999999999999999999988899999999999876543 348
Q ss_pred HHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHh----cC----CCChhHHHHHHHHHHHcCChhH-HHHHHHH
Q 037256 232 AVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDM----ME----KRDLISWNSMLTGYIQNGQASE-ALLLFDE 302 (680)
Q Consensus 232 ~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~----m~----~~~~~~~~~li~~~~~~g~~~~-A~~~~~~ 302 (680)
++..+|+...+.||..|+|+++.+.++.|+++.|.+.+-+ |+ +|...+|..+|..+.+.++..+ |..++.+
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~d 338 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIND 338 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHH
Confidence 8999999999999999999999999999998887654332 22 2455555555555555555432 3333333
Q ss_pred HHhC----CCC---C-CHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcC
Q 037256 303 MQNS----DCK---P-NPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIH 374 (680)
Q Consensus 303 m~~~----g~~---p-~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~ 374 (680)
.+.. .++ | |..-|.+.++.|.+..+.+.|.+++..+.... . +..|-
T Consensus 339 I~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~-N-------------------------~~~ig 392 (625)
T KOG4422|consen 339 IQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGD-N-------------------------WKFIG 392 (625)
T ss_pred HHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-c-------------------------hhhcC
Confidence 3321 111 1 23344555555555555555555554433211 0 00000
Q ss_pred CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHH
Q 037256 375 PSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYA 454 (680)
Q Consensus 375 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 454 (680)
+......-|..+....++....+.-+..|+.|.-.-+-|+..+...+++|....|.++-.-+++..++..|..-+....
T Consensus 393 ~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~- 471 (625)
T KOG4422|consen 393 PDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLR- 471 (625)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHH-
Confidence 0011123455666777777788888888888887767788888888888888888888888888888776533322222
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCCCHh---HHHHHHHHHHHH----HHHHHHHHHccCCCCCchHHHHHHHHHhcCCh
Q 037256 455 CMVDMLGRAGCLYEAFDMIKQMPLPPNDS---VWGALLLACRIH----GEIAANYLFQLEPEHTGYFVLMSNIYAASNKW 527 (680)
Q Consensus 455 ~li~~~~~~g~~~~A~~~~~~m~~~p~~~---~~~~ll~a~~~~----~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~ 527 (680)
++.+.++-.-+..|+.. .+..+..-|... -+...++..+.+ -.+......+-++.+.|+.
T Consensus 472 ------------eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~-~~~t~l~~ia~Ll~R~G~~ 538 (625)
T KOG4422|consen 472 ------------EEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQD-WPATSLNCIAILLLRAGRT 538 (625)
T ss_pred ------------HHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcc-CChhHHHHHHHHHHHcchH
Confidence 22333333333334333 333333333322 112222222211 1234566777788999999
Q ss_pred hHHHHHHHHHHhCCC
Q 037256 528 REVGKLREDMKNKGL 542 (680)
Q Consensus 528 ~~A~~~~~~m~~~g~ 542 (680)
.+|.+++....+++-
T Consensus 539 qkA~e~l~l~~~~~~ 553 (625)
T KOG4422|consen 539 QKAWEMLGLFLRKHN 553 (625)
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999999976554
No 29
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.65 E-value=2.3e-12 Score=143.37 Aligned_cols=417 Identities=11% Similarity=0.032 Sum_probs=296.7
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChh-HHHHH--HHHHHhCCCccHHH
Q 037256 120 CASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVRDLV-SWTVM--ITAYEQAEKPEEAL 196 (680)
Q Consensus 120 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~~~~~-~~~~l--i~~~~~~g~~~~A~ 196 (680)
..+.|+++.|...+.++++......+.++ .++..+...|+.++|+..+++...|+.. .+..+ ...|...|++++|+
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Ai 122 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQAL 122 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 46889999999999999987532223455 8888899999999999999999876443 34444 55788889999999
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--
Q 037256 197 ILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEK-- 274 (680)
Q Consensus 197 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~-- 274 (680)
++|+++.+.. +-|...+..++..+...++.++|.+.+..+.+. .|+...+..++..+...++..+|.+.++++.+
T Consensus 123 ely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 123 ALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 9999998874 334566667788889999999999999998876 34455555555566556777679999999875
Q ss_pred C-ChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhH------HHHHHHH-h----hhcc---hHHHHHHHHHHH
Q 037256 275 R-DLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTA------LILVSAC-T----YLGS---RQLGRKFHGYII 339 (680)
Q Consensus 275 ~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~------~~ll~a~-~----~~g~---~~~a~~i~~~~~ 339 (680)
| +...+..+..+..+.|-...|+++..+-... +.+...-. ...+.-- . ...+ .+.+..-++.+.
T Consensus 200 P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~ 278 (822)
T PRK14574 200 PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLL 278 (822)
T ss_pred CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHH
Confidence 3 5667788889999999999999776652211 11111111 1111111 0 1112 233444444444
Q ss_pred H-cCC-CCchHH-HHHH---HHHHHHcCCHHHHHHHHhhcCCCCC--CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC-
Q 037256 340 N-SNM-KIDATL-RNAV---MDMYAKCGDLDTAENMFNDIHPSER--NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEG- 410 (680)
Q Consensus 340 ~-~~~-~~~~~~-~~~l---i~~y~k~g~~~~A~~~f~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g- 410 (680)
. .+- ++.... ..+. +-++.+.|+..++.+.|+.+..... ...+--++.++|...+++++|+.+|+++....
T Consensus 279 ~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~ 358 (822)
T PRK14574 279 TRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDG 358 (822)
T ss_pred hhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccc
Confidence 3 121 222222 2333 4466788999999999999954432 23355778899999999999999999997643
Q ss_pred ----CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCC-----------CcC---hHHHHHHHHHHHhcCCHHHHHHH
Q 037256 411 ----VKPDHITFTSILSACSHAGLIDEGRKCFADMTKLSV-----------KPE---VKHYACMVDMLGRAGCLYEAFDM 472 (680)
Q Consensus 411 ----~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-----------~p~---~~~~~~li~~~~~~g~~~~A~~~ 472 (680)
..++......|..++..++++++|..+++.+.+..- .|+ ...+..++..+...|++.+|++.
T Consensus 359 ~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~ 438 (822)
T PRK14574 359 KTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKK 438 (822)
T ss_pred cccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 122333457788899999999999999999987311 122 12344567778899999999999
Q ss_pred HHhC-CCCC-CHhHHHHHHHHHHHH-----HHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 037256 473 IKQM-PLPP-NDSVWGALLLACRIH-----GEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKG 541 (680)
Q Consensus 473 ~~~m-~~~p-~~~~~~~ll~a~~~~-----~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 541 (680)
++++ ..-| |...+..+-...... |+..++....++|++..+...++..+...|+|++|.++.+...+.-
T Consensus 439 le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 439 LEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 9998 3344 455555555555544 7778888888999999999999999999999999999999887753
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.64 E-value=1.8e-11 Score=129.58 Aligned_cols=479 Identities=11% Similarity=0.063 Sum_probs=290.5
Q ss_pred CChHHHHHHhhhccCCCC-CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHH
Q 037256 56 GEPNTARSLFNSIHNDKS-YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHG 134 (680)
Q Consensus 56 g~~~~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 134 (680)
|++++|.+++.++..+.| +...|.+|...|-+.|+.++++..+-..-...++ |...|..+..-..+.|++++|.-.+.
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 999999999999999988 6789999999999999999999887666544322 66788888888899999999999999
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCh----h----HHHHHHHHHHhCCCccHHHHHHHHHHHc-
Q 037256 135 DIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVRDL----V----SWTVMITAYEQAEKPEEALILFQKTQQE- 205 (680)
Q Consensus 135 ~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~~~~----~----~~~~li~~~~~~g~~~~A~~~~~~m~~~- 205 (680)
++++.. +++....-.-..+|-+.|+...|..-|.++.+.+. . .--..+..|...++-+.|++.+......
T Consensus 232 rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~ 310 (895)
T KOG2076|consen 232 RAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKE 310 (895)
T ss_pred HHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc
Confidence 999986 44444444457889999999999988887754322 1 1222355566667777888877776652
Q ss_pred CCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHc---------------------------cCCCChhH-HHHHHHHHH
Q 037256 206 GLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICN---------------------------AFLEDLCI-QNSIVAMYA 257 (680)
Q Consensus 206 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---------------------------g~~~~~~~-~~~Li~~y~ 257 (680)
+-..+..+++.++..+.+...++.+.......... +..++..+ ...+--...
T Consensus 311 ~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L 390 (895)
T KOG2076|consen 311 KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHL 390 (895)
T ss_pred cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcc
Confidence 22334445556666666666666665554444331 11222223 111111122
Q ss_pred hcCCHHHHHHHHHhcCC----CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHH
Q 037256 258 RCGNVEKARLVFDMMEK----RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRK 333 (680)
Q Consensus 258 ~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 333 (680)
+.+...+++.-|-.... .++..|.-+..+|.+.|++.+|+.+|..+.....--+...|..+...+...|..+.|.+
T Consensus 391 ~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e 470 (895)
T KOG2076|consen 391 KERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIE 470 (895)
T ss_pred cccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHH
Confidence 33344444433332222 24455667777888888888888888887765444456677777777788888888888
Q ss_pred HHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCC------------HhHHHHHHHHHHhcCChHHHHH
Q 037256 334 FHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERN------------VSSWNVLIAGYGMHGHGRKALE 401 (680)
Q Consensus 334 i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~ 401 (680)
.+..++... +.+..+--.|-..|.+.|+.++|.+++..+. .|| ...--.....|.+.|+.++=+.
T Consensus 471 ~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~--~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~ 547 (895)
T KOG2076|consen 471 FYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQII--NPDGRNAEACAWEPERRILAHRCDILFQVGKREEFIN 547 (895)
T ss_pred HHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhccc--CCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 888777654 4455666677777888888888888887762 222 1111112233444455444333
Q ss_pred HHHHHHHc---------------------------------------------------------------CCCCCH--H
Q 037256 402 FFSQMLEE---------------------------------------------------------------GVKPDH--I 416 (680)
Q Consensus 402 l~~~m~~~---------------------------------------------------------------g~~p~~--~ 416 (680)
+-.+|+.. |+.-+. .
T Consensus 548 t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfe 627 (895)
T KOG2076|consen 548 TASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFE 627 (895)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHH
Confidence 32222211 000111 1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhhc-CCC-cCh---HHHHHHHHHHHhcCCHHHHHHHHHhC----CC--CCC-HhH
Q 037256 417 TFTSILSACSHAGLIDEGRKCFADMTKL-SVK-PEV---KHYACMVDMLGRAGCLYEAFDMIKQM----PL--PPN-DSV 484 (680)
Q Consensus 417 t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~-p~~---~~~~~li~~~~~~g~~~~A~~~~~~m----~~--~p~-~~~ 484 (680)
.+.-++.+.++.+++++|..+...+... -+. ++. ..-.+++.+....+++.+|.+.++.| +. .|. ...
T Consensus 628 l~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l 707 (895)
T KOG2076|consen 628 LFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNL 707 (895)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 2334455566667777777777666655 221 221 22234455555677777777776666 11 221 234
Q ss_pred HHHHHHHHHHHHHHH-----HHHHHccCCCC-CchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 037256 485 WGALLLACRIHGEIA-----ANYLFQLEPEH-TGYFVLMSNIYAASNKWREVGKLREDMKN 539 (680)
Q Consensus 485 ~~~ll~a~~~~~~~~-----~~~~~~l~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 539 (680)
|+..++...+++.++ ...+....|++ +..+...+......+.|..|...+-..-.
T Consensus 708 ~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~ 768 (895)
T KOG2076|consen 708 WNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR 768 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHH
Confidence 554444444443332 22333445555 44455555666677777777775554433
No 31
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.57 E-value=1.5e-09 Score=110.99 Aligned_cols=495 Identities=11% Similarity=0.049 Sum_probs=346.1
Q ss_pred hhhhHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCCCC-CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCccc
Q 037256 34 TSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKS-YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYT 112 (680)
Q Consensus 34 ~~~~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 112 (680)
++-+|.+-+.+ ...++|+.++....+.-| +...|. +|++..-++.|..++.+.++. ++.+...
T Consensus 379 sv~LWKaAVel-----------E~~~darilL~rAveccp~s~dLwl----AlarLetYenAkkvLNkaRe~-iptd~~I 442 (913)
T KOG0495|consen 379 SVRLWKAAVEL-----------EEPEDARILLERAVECCPQSMDLWL----ALARLETYENAKKVLNKAREI-IPTDREI 442 (913)
T ss_pred hHHHHHHHHhc-----------cChHHHHHHHHHHHHhccchHHHHH----HHHHHHHHHHHHHHHHHHHhh-CCCChhH
Confidence 55566655542 455667777776666544 333443 445555667777777777765 5557777
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHH----HhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC-----CC-ChhHHHHH
Q 037256 113 FPFVLKACASNSLILEGKVVHGDII----RTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMS-----VR-DLVSWTVM 182 (680)
Q Consensus 113 ~~~ll~~~~~~~~~~~a~~~~~~~~----~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~-----~~-~~~~~~~l 182 (680)
|.+....=-.+|+.+....+.+.-+ ..|+..+...|-.=...+-+.|..-.+..+..... +. --.+|+.-
T Consensus 443 Witaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~d 522 (913)
T KOG0495|consen 443 WITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDD 522 (913)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhh
Confidence 7666666566777777666665433 34656666666555555555565555555544432 11 23477777
Q ss_pred HHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCH
Q 037256 183 ITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNV 262 (680)
Q Consensus 183 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~ 262 (680)
...|.+.+.++-|..+|...++. .+-+...|......--..|..+.-..++..++..- +.....|-....-+-+.|++
T Consensus 523 a~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv 600 (913)
T KOG0495|consen 523 AQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDV 600 (913)
T ss_pred HHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCc
Confidence 78888888888888888777764 23344555555555556677788888888777653 34455566666777778899
Q ss_pred HHHHHHHHhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHH
Q 037256 263 EKARLVFDMMEK---RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYII 339 (680)
Q Consensus 263 ~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~ 339 (680)
..|+.++...-+ .+...|-+-+..-..+..+++|..+|.+.... .|+...|.--+..--.++..++|.++++..+
T Consensus 601 ~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~l 678 (913)
T KOG0495|consen 601 PAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEAL 678 (913)
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHH
Confidence 999888887754 35567888888888888999999999888764 5666655555555556788889999888887
Q ss_pred HcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 037256 340 NSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERN-VSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITF 418 (680)
Q Consensus 340 ~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 418 (680)
+.- +.-...|-.+...+-+.++++.|.+.|..-...-|+ +..|-.|...=-+.|+..+|..++++..-.+ +-|...|
T Consensus 679 k~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lw 756 (913)
T KOG0495|consen 679 KSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLW 756 (913)
T ss_pred HhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhH
Confidence 653 445677888888899999999999998887666665 5578777777778889999999999888753 3355688
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhH-HHHHHHHHHHH--
Q 037256 419 TSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSV-WGALLLACRIH-- 495 (680)
Q Consensus 419 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~-~~~ll~a~~~~-- 495 (680)
...+..-.+.|+.+.|..+..+..+. .+.+-..|.--|.+..+.++-..+.+.+++..-.|.+.. ..-++.+-.+.
T Consensus 757 le~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~k 835 (913)
T KOG0495|consen 757 LESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEK 835 (913)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHH
Confidence 88888889999999999888887774 466677888888888888888888888887754443321 11122222222
Q ss_pred HHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCceeEEEE
Q 037256 496 GEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKGLKKPAAFSVIEY 553 (680)
Q Consensus 496 ~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~s~~~~ 553 (680)
++.-+++.+..+|++..++..+-..+...|.-++-.+++++-... .|..|..|..+
T Consensus 836 ar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~av 891 (913)
T KOG0495|consen 836 AREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAV 891 (913)
T ss_pred HHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHH
Confidence 677788899999999999999999999999999999998887653 35567777544
No 32
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.53 E-value=1.7e-11 Score=119.46 Aligned_cols=402 Identities=13% Similarity=0.133 Sum_probs=227.7
Q ss_pred CChHHHHHHhhhccCCCCC------cchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHH
Q 037256 56 GEPNTARSLFNSIHNDKSY------SFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEG 129 (680)
Q Consensus 56 g~~~~A~~~f~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 129 (680)
..+..|++.++-...+-|+ ....|.+.-.+.+.|.++.|+..|+...+. .||..+-..|+-.+..-|+-++.
T Consensus 251 r~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekm 328 (840)
T KOG2003|consen 251 REFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKM 328 (840)
T ss_pred hhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHH
Confidence 5667777766544333332 123444555677888888888888877664 46666544455555566778888
Q ss_pred HHHHHHHHHhCCC------------CchhHHHHHH-----HHHHhcC--ChHHH----HHHHhcCCCCChh---HHH---
Q 037256 130 KVVHGDIIRTGFL------------SDSYVQAALV-----DMYAKCG--QTDDG----CKVFDEMSVRDLV---SWT--- 180 (680)
Q Consensus 130 ~~~~~~~~~~g~~------------~~~~~~~~Li-----~~~~~~g--~~~~A----~~~f~~~~~~~~~---~~~--- 180 (680)
++.|..|+..... |+....|.-| .-.-+.. +.++| .++..-...||-. -|.
T Consensus 329 keaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~ 408 (840)
T KOG2003|consen 329 KEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLES 408 (840)
T ss_pred HHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHH
Confidence 8888888764322 2222222221 1111111 11111 1122112222211 010
Q ss_pred ---------------HHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhH--HHHHHHHHhccCChHHHHHHHHHHHHccCC
Q 037256 181 ---------------VMITAYEQAEKPEEALILFQKTQQEGLLSDSVT--IVSVASAVGQLGDVLKAQAVHGYAICNAFL 243 (680)
Q Consensus 181 ---------------~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 243 (680)
.-...|.++|+++.|+++++-+.+..-+.-... -..++..+-...++..|.++-+..+... .
T Consensus 409 lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-r 487 (840)
T KOG2003|consen 409 LKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-R 487 (840)
T ss_pred HHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-c
Confidence 012346777888888888777765432222211 2223333333456666666666555432 1
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHH---HHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 037256 244 EDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLT---GYIQNGQASEALLLFDEMQNSDCKPNPVTALILVS 320 (680)
Q Consensus 244 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~---~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 320 (680)
-+....+.-.+.-...|++++|.+.+.+....|..+-.+|.. .+-..|+.++|++.|-++..- +..+...+..+.+
T Consensus 488 yn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qian 566 (840)
T KOG2003|consen 488 YNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIAN 566 (840)
T ss_pred cCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHH
Confidence 111111212223345677888888888777766655444433 456677888888887776532 2334555666666
Q ss_pred HHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCC-CCCHhHHHHHHHHHHhcCChHHH
Q 037256 321 ACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPS-ERNVSSWNVLIAGYGMHGHGRKA 399 (680)
Q Consensus 321 a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A 399 (680)
.|....+..+|.+++.+.... ++.|+.+.+-|.+.|-+.|+-.+|.+.+-+--.- .-|..+..=|..-|....-+++|
T Consensus 567 iye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~eka 645 (840)
T KOG2003|consen 567 IYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKA 645 (840)
T ss_pred HHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHH
Confidence 677777777777776655432 4567777777777777777777777665433222 33455555556666666777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHH-HccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCC
Q 037256 400 LEFFSQMLEEGVKPDHITFTSILSAC-SHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGC 465 (680)
Q Consensus 400 ~~l~~~m~~~g~~p~~~t~~~ll~a~-~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 465 (680)
+..|++..- ++|+..-|..++..| .+.|+++.|..++....+ .++.|.....-|++..+..|.
T Consensus 646 i~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr-kfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 646 INYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR-KFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-hCccchHHHHHHHHHhccccc
Confidence 777777665 777777777766655 456777777777776655 456666666666666666554
No 33
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.52 E-value=2.8e-09 Score=109.01 Aligned_cols=460 Identities=14% Similarity=0.102 Sum_probs=361.5
Q ss_pred HHHhhhhhhhcccCCCChHHHHHHhhhccCCCC-CcchHHHHHHHHHhCCCchHHHHHHHH----HHhCCCCCCcccHHH
Q 037256 41 ALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKS-YSFLWNTMIRAYANNGHCVETLELYST----MRRSGISSNSYTFPF 115 (680)
Q Consensus 41 li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~t~~~ 115 (680)
|.-+|++ . ..++.|.++++...+.-| +...|-+-...--++|+.+...++..+ +...|+..+...|..
T Consensus 412 LwlAlar-L------etYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~ 484 (913)
T KOG0495|consen 412 LWLALAR-L------ETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLK 484 (913)
T ss_pred HHHHHHH-H------HHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHH
Confidence 4445566 6 788999999998888766 778897776666778998888887765 456788889999999
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhHHHHHHHHHHhCC
Q 037256 116 VLKACASNSLILEGKVVHGDIIRTGFLSD--SYVQAALVDMYAKCGQTDDGCKVFDEMSV---RDLVSWTVMITAYEQAE 190 (680)
Q Consensus 116 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~Li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g 190 (680)
=..+|-..|..-.+..+....+..|++.. ..+|+.-...+.+.+.++-|+.+|....+ .+...|...+..--..|
T Consensus 485 eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hg 564 (913)
T KOG0495|consen 485 EAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHG 564 (913)
T ss_pred HHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcC
Confidence 99999999999999999999998887543 46888888999999999999999987653 36677888877777788
Q ss_pred CccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 037256 191 KPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFD 270 (680)
Q Consensus 191 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~ 270 (680)
..++-..+|++.... .+-....|....+..-..|++..|..++..+.+.. +.+..+|-+-+..-.....++.|+.+|.
T Consensus 565 t~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~lla 642 (913)
T KOG0495|consen 565 TRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLA 642 (913)
T ss_pred cHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHH
Confidence 899999999998875 33344455555566667799999999999998876 3477888889999999999999999999
Q ss_pred hcCC--CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHh-hHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCch
Q 037256 271 MMEK--RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPV-TALILVSACTYLGSRQLGRKFHGYIINSNMKIDA 347 (680)
Q Consensus 271 ~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~ 347 (680)
+... ++...|.--+..---.++.++|++++++..+. -|+-. .|..+.+.+-+.++.+.|+..|..-.+. ++..+
T Consensus 643 kar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~i 719 (913)
T KOG0495|consen 643 KARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSI 719 (913)
T ss_pred HHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCc
Confidence 8764 56777777677667789999999999998875 56544 5566667788889999998888765543 35677
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHhhcCCC-CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 037256 348 TLRNAVMDMYAKCGDLDTAENMFNDIHPS-ERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACS 426 (680)
Q Consensus 348 ~~~~~li~~y~k~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 426 (680)
..|-.|.+.--+.|.+-.|..+|++..-. ..|...|-..|..=.+.|+.+.|..+..+.++. .+-+...|..-|...-
T Consensus 720 pLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~ 798 (913)
T KOG0495|consen 720 PLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEP 798 (913)
T ss_pred hHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhcc
Confidence 88999999999999999999999988444 457889999999999999999999999988885 4444457777777666
Q ss_pred ccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HhHHHHHHHHHHHHH-----HHH
Q 037256 427 HAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM-PLPPN-DSVWGALLLACRIHG-----EIA 499 (680)
Q Consensus 427 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~a~~~~~-----~~~ 499 (680)
+.++-......+.+ .+-|..+.-.+...+-...++++|.+.|.+. ...|| .-+|.-+..-...|| .+.
T Consensus 799 ~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev 873 (913)
T KOG0495|consen 799 RPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEV 873 (913)
T ss_pred CcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHH
Confidence 66664444433332 2456667778888899999999999999987 56665 457877887788885 445
Q ss_pred HHHHHccCCCCCchHHHHH
Q 037256 500 ANYLFQLEPEHTGYFVLMS 518 (680)
Q Consensus 500 ~~~~~~l~p~~~~~~~~l~ 518 (680)
+.+...-+|.....+...+
T Consensus 874 ~~~c~~~EP~hG~~W~avS 892 (913)
T KOG0495|consen 874 LKKCETAEPTHGELWQAVS 892 (913)
T ss_pred HHHHhccCCCCCcHHHHHh
Confidence 6677778888766555544
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.48 E-value=3.1e-09 Score=113.02 Aligned_cols=500 Identities=12% Similarity=0.065 Sum_probs=238.7
Q ss_pred hhhhHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCCCCCc-chHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCccc
Q 037256 34 TSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKSYS-FLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYT 112 (680)
Q Consensus 34 ~~~~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 112 (680)
|.-.|..+-....+ . |.++.|+-.|.+..+..|+. ...---...|-+.|+...|.+.|.++.+..++.|-.-
T Consensus 206 d~e~W~~ladls~~-~------~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er 278 (895)
T KOG2076|consen 206 DYELWKRLADLSEQ-L------GNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIER 278 (895)
T ss_pred ChHHHHHHHHHHHh-c------ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHH
Confidence 44455555554444 4 66666666666666664422 2222233445556666666666666655432212222
Q ss_pred HHHH----HHHHhccCChHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--------------
Q 037256 113 FPFV----LKACASNSLILEGKVVHGDIIRTG-FLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSV-------------- 173 (680)
Q Consensus 113 ~~~l----l~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~-------------- 173 (680)
+..+ ++.+...++-+.|.+.++..+..+ -..+...++.++.+|.+...++.|......+..
T Consensus 279 ~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~ 358 (895)
T KOG2076|consen 279 IEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDE 358 (895)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhh
Confidence 2222 233334444455555555554422 123344555666666666666555554433211
Q ss_pred ------------CChhHHH----HHHHHHHhCCCccHHHHHHHHHHHcC--CCCCHhHHHHHHHHHhccCChHHHHHHHH
Q 037256 174 ------------RDLVSWT----VMITAYEQAEKPEEALILFQKTQQEG--LLSDSVTIVSVASAVGQLGDVLKAQAVHG 235 (680)
Q Consensus 174 ------------~~~~~~~----~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 235 (680)
++..+|+ -+.-++......+....+...+.+.. +.-+...|..+..++...|.+.+|..++.
T Consensus 359 ~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~ 438 (895)
T KOG2076|consen 359 RRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLS 438 (895)
T ss_pred hccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 0111111 11222223333333333333333333 22234456666677777777777777777
Q ss_pred HHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh---hHHHHHHHHHHHcCChhHHHHHHHHHHh-------
Q 037256 236 YAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDL---ISWNSMLTGYIQNGQASEALLLFDEMQN------- 305 (680)
Q Consensus 236 ~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~------- 305 (680)
.+.......+..+|-.+..+|...|.++.|.+.|+.+..-++ ..--+|-..+.+.|+.++|++.+..+..
T Consensus 439 ~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e 518 (895)
T KOG2076|consen 439 PITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAE 518 (895)
T ss_pred HHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchh
Confidence 776665555666777777777777777777777776654322 2333444556677777777777766431
Q ss_pred -CCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcC----------------------CCCchHHHHHHHHHHHHcCC
Q 037256 306 -SDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSN----------------------MKIDATLRNAVMDMYAKCGD 362 (680)
Q Consensus 306 -~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~----------------------~~~~~~~~~~li~~y~k~g~ 362 (680)
.+..|+..........+.+.|+.++-..+-..++... ..........++.+-.+.++
T Consensus 519 ~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 598 (895)
T KOG2076|consen 519 ACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATD 598 (895)
T ss_pred hccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCc
Confidence 1233333333333444445555444333322222100 00011111111222222221
Q ss_pred HHHHHHHHhhc------CCCCCCHhH----HHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCCHH--HH-HHHHHHHHc
Q 037256 363 LDTAENMFNDI------HPSERNVSS----WNVLIAGYGMHGHGRKALEFFSQMLEEG--VKPDHI--TF-TSILSACSH 427 (680)
Q Consensus 363 ~~~A~~~f~~~------~~~~~~~~~----~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~~~--t~-~~ll~a~~~ 427 (680)
.....+-...- ....-+..- +.-++..+++.+++++|+.+...+.+.. ..++.. .+ ...+.++..
T Consensus 599 ~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~ 678 (895)
T KOG2076|consen 599 DNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLY 678 (895)
T ss_pred hHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHh
Confidence 11111000000 000111111 2334445556666666666655555432 111111 11 223344455
Q ss_pred cCCHHHHHHHHHHhhhc-CCCcC---hHHHHHHHH-----------------------------------HHHhcCCHHH
Q 037256 428 AGLIDEGRKCFADMTKL-SVKPE---VKHYACMVD-----------------------------------MLGRAGCLYE 468 (680)
Q Consensus 428 ~g~~~~a~~~~~~m~~~-~~~p~---~~~~~~li~-----------------------------------~~~~~g~~~~ 468 (680)
.+++..|...++.|... ++..+ ...|++... .+...+.+..
T Consensus 679 ~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~ 758 (895)
T KOG2076|consen 679 ARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKH 758 (895)
T ss_pred cCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHH
Confidence 56666666655555544 22111 122332111 2234456666
Q ss_pred HHHHHHhC-CCCCCHhHHHHHHHHHHHH----------------HHHHHHHHHccCCC--CCchHHHHHHHHHhcCChhH
Q 037256 469 AFDMIKQM-PLPPNDSVWGALLLACRIH----------------GEIAANYLFQLEPE--HTGYFVLMSNIYAASNKWRE 529 (680)
Q Consensus 469 A~~~~~~m-~~~p~~~~~~~ll~a~~~~----------------~~~~~~~~~~l~p~--~~~~~~~l~~~~~~~g~~~~ 529 (680)
|+..+-+. ...||....+.+++.-..| |..-+.+..++.-. ...+.+.++.+|-..|-..-
T Consensus 759 Al~~y~ra~~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~L 838 (895)
T KOG2076|consen 759 ALQEYMRAFRQNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHL 838 (895)
T ss_pred HHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHH
Confidence 76655444 3456666666666554444 33333344444332 45788889999999999999
Q ss_pred HHHHHHHHHhC
Q 037256 530 VGKLREDMKNK 540 (680)
Q Consensus 530 A~~~~~~m~~~ 540 (680)
|..++++..+-
T Consensus 839 A~~YYekvL~~ 849 (895)
T KOG2076|consen 839 AVSYYEKVLEV 849 (895)
T ss_pred HHHHHHHHhCC
Confidence 99999988764
No 35
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.48 E-value=6e-11 Score=124.77 Aligned_cols=285 Identities=15% Similarity=0.067 Sum_probs=197.8
Q ss_pred hCCCccHHHHHHHHHHHcCCCCCH-hHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHH
Q 037256 188 QAEKPEEALILFQKTQQEGLLSDS-VTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKAR 266 (680)
Q Consensus 188 ~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~ 266 (680)
..|+++.|.+.+.+..+. .|+. ..+.....+....|+.+.+.+.+....+....+...+.-.....+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 457777777777665543 2332 2333444556666777777777777665543333334445577788889999998
Q ss_pred HHHHhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHH---hhhcchHHHHHHHHHHHH
Q 037256 267 LVFDMMEK---RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSAC---TYLGSRQLGRKFHGYIIN 340 (680)
Q Consensus 267 ~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~---~~~g~~~~a~~i~~~~~~ 340 (680)
..++.+.+ .++..+..+...+.+.|++++|.+++..+.+.++.+.......-..+. ...+..+.+.+.+..+.+
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 88888865 366678888889999999999999999999886443322211111111 222233333334444444
Q ss_pred cCC---CCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhH---HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 037256 341 SNM---KIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSS---WNVLIAGYGMHGHGRKALEFFSQMLEEGVKPD 414 (680)
Q Consensus 341 ~~~---~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 414 (680)
... +.+...+..+...+...|+.++|.+++++..+..||... +..........++.+.+++.+++..+ ..|+
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk--~~p~ 331 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK--NVDD 331 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH--hCCC
Confidence 322 247888999999999999999999999999776666542 12222333446788899999988887 4566
Q ss_pred HH---HHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256 415 HI---TFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM 476 (680)
Q Consensus 415 ~~---t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 476 (680)
.. ...++...|.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55 455778889999999999999996554445799988999999999999999999999874
No 36
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.47 E-value=1.7e-10 Score=112.56 Aligned_cols=441 Identities=15% Similarity=0.141 Sum_probs=292.6
Q ss_pred HHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHH-HHHHHhccCChHHHHHHHHHHHHhCCCCc----hhHHHHHHHHH
Q 037256 81 MIRAYANNGHCVETLELYSTMRRSGISSNSYTFPF-VLKACASNSLILEGKVVHGDIIRTGFLSD----SYVQAALVDMY 155 (680)
Q Consensus 81 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~Li~~~ 155 (680)
|.+-|.-+....+|+..|+-..+...-||.-.+.. +-+.+.+.+.+.+|.+.+...+..-...+ .-+.+.+.-.+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 44456667778899999998888777777654432 22445677788899998887776532222 23445555567
Q ss_pred HhcCChHHHHHHHhcCC--CCChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCC------------HhHHHHHH---
Q 037256 156 AKCGQTDDGCKVFDEMS--VRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSD------------SVTIVSVA--- 218 (680)
Q Consensus 156 ~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------------~~t~~~ll--- 218 (680)
.+.|++++|...|+... .||..+--.|+-++.--|+-++..+.|.+|......|| ....+..+
T Consensus 287 iq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd 366 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKND 366 (840)
T ss_pred EecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhH
Confidence 88999999999999765 36666544455556667889999999999986533333 22222222
Q ss_pred --HHHhccC--ChHHHHHHHHHHHHccCCCChhH-------------HH--------HHHHHHHhcCCHHHHHHHHHhcC
Q 037256 219 --SAVGQLG--DVLKAQAVHGYAICNAFLEDLCI-------------QN--------SIVAMYARCGNVEKARLVFDMME 273 (680)
Q Consensus 219 --~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~~-------------~~--------~Li~~y~~~g~~~~A~~~f~~m~ 273 (680)
+-..+.+ +-+++.-.-..++.--+.|+-.. +. .-..-|.+.|+++.|.+++.-..
T Consensus 367 ~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~ 446 (840)
T KOG2003|consen 367 HLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFE 446 (840)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHH
Confidence 1111111 11122111122221112222110 00 11234778899999988888777
Q ss_pred CCChhHHHHH-----HHHHHH-cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCch
Q 037256 274 KRDLISWNSM-----LTGYIQ-NGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDA 347 (680)
Q Consensus 274 ~~~~~~~~~l-----i~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~ 347 (680)
++|..+-++- .--|.+ ..++.+|.+.-....... +-+....+.--......|++++|...+++.+...-....
T Consensus 447 ~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~e 525 (840)
T KOG2003|consen 447 KKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTE 525 (840)
T ss_pred hccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHH
Confidence 6554332221 112233 334666666555544322 223333332233334568999999999999876544444
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHhhcCCC-CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 037256 348 TLRNAVMDMYAKCGDLDTAENMFNDIHPS-ERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKP-DHITFTSILSAC 425 (680)
Q Consensus 348 ~~~~~li~~y~k~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~ 425 (680)
..|| +.-.+-+.|++++|++.|-++... ..++...-.+.+.|-...+..+|++++.+... +-| |.....-|...|
T Consensus 526 alfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~dly 602 (840)
T KOG2003|consen 526 ALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLADLY 602 (840)
T ss_pred HHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHh
Confidence 4444 344577889999999999888444 44566777788889999999999999977766 555 456778888899
Q ss_pred HccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHHH------HHH
Q 037256 426 SHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM-PLPPNDSVWGALLLACRIH------GEI 498 (680)
Q Consensus 426 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~a~~~~------~~~ 498 (680)
-+.|+-.+|.+.+-.--+ -++-++++...|..-|....-.++|+.+|++. -++|+.+-|-.++.+|.+. +..
T Consensus 603 dqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d 681 (840)
T KOG2003|consen 603 DQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFD 681 (840)
T ss_pred hcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHH
Confidence 999999999988755433 46778889888999999999999999999997 5789999999999999887 444
Q ss_pred HHHHHHccCCCCCchHHHHHHHHHhcCC
Q 037256 499 AANYLFQLEPEHTGYFVLMSNIYAASNK 526 (680)
Q Consensus 499 ~~~~~~~l~p~~~~~~~~l~~~~~~~g~ 526 (680)
..+.....-|.|....-.|..++...|.
T Consensus 682 ~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 682 LYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHhCccchHHHHHHHHHhccccc
Confidence 5556666789998888888888887774
No 37
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.46 E-value=1.2e-10 Score=121.84 Aligned_cols=248 Identities=17% Similarity=0.124 Sum_probs=166.9
Q ss_pred hccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChhHHHH
Q 037256 222 GQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEK---RDLISWNSMLTGYIQNGQASEALL 298 (680)
Q Consensus 222 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~ 298 (680)
...|+.+.+.+.+..+.+....+...........+...|+++.|...++.+.+ .++.....+...|.+.|++++|.+
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~ 208 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLD 208 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHH
Confidence 44455555555555554432111112222335566677777777777777654 255666777777888888888888
Q ss_pred HHHHHHhCCCCCCH-------hhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHh
Q 037256 299 LFDEMQNSDCKPNP-------VTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFN 371 (680)
Q Consensus 299 ~~~~m~~~g~~p~~-------~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~ 371 (680)
++..+.+.+..++. .+|..++.......+.+...++++.+.+. .+.++.....+...+.+.|+.++|.++++
T Consensus 209 ~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~ 287 (398)
T PRK10747 209 ILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIIL 287 (398)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 88888776544322 12223333333333444444555444322 24577788889999999999999999998
Q ss_pred hcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcCh
Q 037256 372 DIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHI-TFTSILSACSHAGLIDEGRKCFADMTKLSVKPEV 450 (680)
Q Consensus 372 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~ 450 (680)
+..+..++.... ++.+....++.+++++..++..+ -.|+.. .+..+...|.+.+++++|.+.|+.+.+. .|+.
T Consensus 288 ~~l~~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk--~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~ 361 (398)
T PRK10747 288 DGLKRQYDERLV--LLIPRLKTNNPEQLEKVLRQQIK--QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDA 361 (398)
T ss_pred HHHhcCCCHHHH--HHHhhccCCChHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCH
Confidence 886555555322 33444456899999999999887 456654 5777888899999999999999998864 6888
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256 451 KHYACMVDMLGRAGCLYEAFDMIKQM 476 (680)
Q Consensus 451 ~~~~~li~~~~~~g~~~~A~~~~~~m 476 (680)
..|..|...+.+.|+.++|.+.+++.
T Consensus 362 ~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 362 YDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88889999999999999999988764
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=2.5e-10 Score=112.28 Aligned_cols=366 Identities=16% Similarity=0.176 Sum_probs=254.5
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHH--HHH
Q 037256 140 GFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTI--VSV 217 (680)
Q Consensus 140 g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--~~l 217 (680)
+...|.+.+-...-.+.+.|....|++.|......-+..|.+.+....-.-+.+ ...... .|.+.|...+ .-+
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e----~~~~l~-~~l~~~~h~M~~~F~ 233 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIE----ILSILV-VGLPSDMHWMKKFFL 233 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHH----HHHHHH-hcCcccchHHHHHHH
Confidence 334555544444445566788888888887776544444554443322222222 222222 1222222222 123
Q ss_pred HHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCC------ChhHHHHHHHHHHHcC
Q 037256 218 ASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKR------DLISWNSMLTGYIQNG 291 (680)
Q Consensus 218 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g 291 (680)
..++......+++.+-.......|++.+...-+-...+.-...+++.|+.+|+++.+. |..+|+.++ |+++.
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~ 311 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhh
Confidence 4555566678888888888888998888887777777888889999999999999874 445666655 34443
Q ss_pred ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHh
Q 037256 292 QASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFN 371 (680)
Q Consensus 292 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~ 371 (680)
+.. +.++.+-.-.--+--+.|...+.+-|+-.+..++|..+|+..++.+ +....+|+.+.+-|....+...|.+-++
T Consensus 312 ~sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 312 KSK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred hHH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 322 2222222111113344577778888888999999999999999987 5677889999999999999999999999
Q ss_pred hcCCC-CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcC
Q 037256 372 DIHPS-ERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH-ITFTSILSACSHAGLIDEGRKCFADMTKLSVKPE 449 (680)
Q Consensus 372 ~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~ 449 (680)
+..+. ..|-..|-.|..+|.-.+.+.-|+-.|++..+ ++|+. ..|.+|..+|.+.++.++|+..|......| ..+
T Consensus 389 rAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte 465 (559)
T KOG1155|consen 389 RAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTE 465 (559)
T ss_pred HHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccc
Confidence 98666 45788999999999999999999999999998 77765 589999999999999999999999998875 346
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChhH
Q 037256 450 VKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEIAANYLFQLEPEHTGYFVLMSNIYAASNKWRE 529 (680)
Q Consensus 450 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~ 529 (680)
...+..|.++|-+.++.++|.+.|++.-. + ....-+.+|+...+..-|+.-+.+.++|++
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~-----~---------------~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~ 525 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVE-----V---------------SELEGEIDDETIKARLFLAEYFKKMKDFDE 525 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHH-----H---------------HHhhcccchHHHHHHHHHHHHHHhhcchHH
Confidence 67888999999999999999888876410 0 000001223223334446677778888888
Q ss_pred HHHHHHHHH
Q 037256 530 VGKLREDMK 538 (680)
Q Consensus 530 A~~~~~~m~ 538 (680)
|..+-....
T Consensus 526 As~Ya~~~~ 534 (559)
T KOG1155|consen 526 ASYYATLVL 534 (559)
T ss_pred HHHHHHHHh
Confidence 877665543
No 39
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=5e-10 Score=110.87 Aligned_cols=211 Identities=16% Similarity=0.124 Sum_probs=155.0
Q ss_pred hcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHH
Q 037256 325 LGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFF 403 (680)
Q Consensus 325 ~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~ 403 (680)
.|+.-.+.+-++..++....+ ...|--+..+|....+.++..+.|+...+..| |+.+|..-...+.-.+++++|..=|
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred cCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 456666666677766655332 22255566677888888888888887755543 4666766666666777888888888
Q ss_pred HHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 037256 404 SQMLEEGVKPDHI-TFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM-PLPPN 481 (680)
Q Consensus 404 ~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 481 (680)
++.+. +.|+.. .|..+--+..+.++++++...|++.+++ ++.-++.|+.....+...+++++|.+.|+.. .+.|+
T Consensus 418 ~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 418 QKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 88887 677654 6777777777888888888888888774 5666788888888888888899888888775 44444
Q ss_pred ---------HhHHHHHHHHHHHH----HHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 037256 482 ---------DSVWGALLLACRIH----GEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKN 539 (680)
Q Consensus 482 ---------~~~~~~ll~a~~~~----~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 539 (680)
+.+-.+++-.-.+. |...+.++++++|...-+|..|+.+-...|+.++|+++|++-..
T Consensus 495 ~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 495 EHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred cccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 22223333222222 77788899999999999999999999999999999999998653
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=2.6e-09 Score=105.20 Aligned_cols=368 Identities=11% Similarity=0.044 Sum_probs=259.4
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhH-HHHHHHHHHhCCCccHHHHH
Q 037256 120 CASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVRDLVS-WTVMITAYEQAEKPEEALIL 198 (680)
Q Consensus 120 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~ 198 (680)
..+.|....|...+...+.. -+..|.+-+....-.-+.+.+..+-...+..+... ---+..++....+.+++++-
T Consensus 174 ~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k 249 (559)
T KOG1155|consen 174 LKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQK 249 (559)
T ss_pred HHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777666543 23344444443333445555555554444432211 12244556666688888888
Q ss_pred HHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCC--CChhHHHHHHHHHHhcCCHHH-HHHHHHhcCCC
Q 037256 199 FQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFL--EDLCIQNSIVAMYARCGNVEK-ARLVFDMMEKR 275 (680)
Q Consensus 199 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~Li~~y~~~g~~~~-A~~~f~~m~~~ 275 (680)
.......|++-+...-+....+.-...|+++|+.+|+.+.+..+- .|..+|+.++-.--.+.++.- |..++ .+.+-
T Consensus 250 ~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~-~idKy 328 (559)
T KOG1155|consen 250 KERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVS-NIDKY 328 (559)
T ss_pred HHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHH-HhccC
Confidence 888888887666655555555666789999999999999998532 256666665543333333322 22222 23333
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 037256 276 DLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMD 355 (680)
Q Consensus 276 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 355 (680)
-+.|...+.+-|.-.++.++|...|++..+.+ +-....|+.+..-|....+...|.+-++.+++-+ +.|-..|-.|..
T Consensus 329 R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQ 406 (559)
T KOG1155|consen 329 RPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQ 406 (559)
T ss_pred CccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhH
Confidence 45566666777888889999999999998764 3344567777778899999999999999998876 678899999999
Q ss_pred HHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 037256 356 MYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEG 434 (680)
Q Consensus 356 ~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 434 (680)
+|.-.+...-|+-.|++.....| |...|.+|..+|.+.++.++|++.|.+....| ..+...+..|...+-+.++.++|
T Consensus 407 aYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eA 485 (559)
T KOG1155|consen 407 AYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEA 485 (559)
T ss_pred HHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999999976666 68899999999999999999999999999865 33667899999999999999999
Q ss_pred HHHHHHhhhc----CCCcC--hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHHH
Q 037256 435 RKCFADMTKL----SVKPE--VKHYACMVDMLGRAGCLYEAFDMIKQM-PLPPNDSVWGALLLACRIH 495 (680)
Q Consensus 435 ~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~a~~~~ 495 (680)
.+.|++-++. |...+ .....-|..-+.+.+++++|....... ...+...--++|+..++++
T Consensus 486 a~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~LlReir~~ 553 (559)
T KOG1155|consen 486 AQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEAKALLREIRKI 553 (559)
T ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHHHHHHHHHh
Confidence 9999887663 43332 333334566778899999998876655 2244555556666666543
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.43 E-value=9.4e-11 Score=122.60 Aligned_cols=284 Identities=8% Similarity=0.004 Sum_probs=170.5
Q ss_pred CCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHH--HHHHHHHhcCChHHHH
Q 037256 88 NGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQA--ALVDMYAKCGQTDDGC 165 (680)
Q Consensus 88 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~--~Li~~~~~~g~~~~A~ 165 (680)
.|+++.|.+.+....+.+-.| ...|.....+..+.|+.+.+.+.+.++.+. .|+..... .....+...|+.+.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 578888887776655432111 112322334446777888888888777664 34433222 3355677778888887
Q ss_pred HHHhcCCC---CChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccC
Q 037256 166 KVFDEMSV---RDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAF 242 (680)
Q Consensus 166 ~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 242 (680)
..+++..+ .+......+...|.+.|++++|.+++..+.+.+..++. .+..+-
T Consensus 174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~------------------------ 228 (398)
T PRK10747 174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE------------------------ 228 (398)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH------------------------
Confidence 77776653 25556677777777778888888777777766533211 111000
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHH
Q 037256 243 LEDLCIQNSIVAMYARCGNVEKARLVFDMMEK---RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILV 319 (680)
Q Consensus 243 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 319 (680)
..++..++....+..+.+...++++.+++ .++.....+...+...|+.++|.+++++..+. +||.... ++
T Consensus 229 ---~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l 301 (398)
T PRK10747 229 ---QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LL 301 (398)
T ss_pred ---HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HH
Confidence 00122223333333455666666666654 46777888888999999999999999888773 4444211 12
Q ss_pred HHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHH
Q 037256 320 SACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKA 399 (680)
Q Consensus 320 ~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A 399 (680)
.+....++.+.+.+..+...+.. +.|.....++..++.+.+++++|.+.|+......|+...+..+...+.+.|+.++|
T Consensus 302 ~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A 380 (398)
T PRK10747 302 IPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEA 380 (398)
T ss_pred HhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHH
Confidence 22223366666666666555443 34555566666666666666666666666655566666666666666666666666
Q ss_pred HHHHHHHH
Q 037256 400 LEFFSQML 407 (680)
Q Consensus 400 ~~l~~~m~ 407 (680)
.+++++-.
T Consensus 381 ~~~~~~~l 388 (398)
T PRK10747 381 AAMRRDGL 388 (398)
T ss_pred HHHHHHHH
Confidence 66666553
No 42
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.42 E-value=7.2e-13 Score=132.27 Aligned_cols=255 Identities=19% Similarity=0.271 Sum_probs=102.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHh-cCC----CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhh
Q 037256 251 SIVAMYARCGNVEKARLVFDM-MEK----RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYL 325 (680)
Q Consensus 251 ~Li~~y~~~g~~~~A~~~f~~-m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 325 (680)
.+..++.+.|++++|.++++. +.. .|+.-|..+.......+++++|.+.++++...+. -+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccc
Confidence 457788888999999998854 322 3556666666677778889999999988887642 245556666655 677
Q ss_pred cchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCC---CCCHhHHHHHHHHHHhcCChHHHHHH
Q 037256 326 GSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPS---ERNVSSWNVLIAGYGMHGHGRKALEF 402 (680)
Q Consensus 326 g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l 402 (680)
+++++|.++.....+.. ++...+..++..|.+.++++++.++++.+... ..+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888776665443 45566677788888888888888888875322 35667788888888888888888888
Q ss_pred HHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC
Q 037256 403 FSQMLEEGVKPD-HITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPN 481 (680)
Q Consensus 403 ~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~ 481 (680)
+++..+ ..|+ ......++..+...|+.+++.++++...+.. +.+...+..+..+|...|+.++|+.++++.
T Consensus 169 ~~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~----- 240 (280)
T PF13429_consen 169 YRKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKA----- 240 (280)
T ss_dssp HHHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHH-----
T ss_pred HHHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccc-----
Confidence 888888 5665 4467777778888888888888887777653 455566778888888888888888887653
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 037256 482 DSVWGALLLACRIHGEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKN 539 (680)
Q Consensus 482 ~~~~~~ll~a~~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 539 (680)
+...|+|+.....+++++...|+.++|.+++.+.-.
T Consensus 241 ----------------------~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 241 ----------------------LKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp ----------------------HHHSTT-HHHHHHHHHHHT-----------------
T ss_pred ----------------------cccccccccccccccccccccccccccccccccccc
Confidence 456899999999999999999999999999887643
No 43
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.42 E-value=8.7e-13 Score=131.71 Aligned_cols=255 Identities=16% Similarity=0.157 Sum_probs=83.8
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHhCCCCCCc-ccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 037256 80 TMIRAYANNGHCVETLELYSTMRRSGISSNS-YTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKC 158 (680)
Q Consensus 80 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~ 158 (680)
.+...+.+.|++++|++++++......+|+. ..|..+...+...++.+.|.+.++.+++.+. .++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccc
Confidence 4456667778888888888654433223333 3333444455567778888888888877652 355666666666 577
Q ss_pred CChHHHHHHHhcCC--CCChhHHHHHHHHHHhCCCccHHHHHHHHHHHcC-CCCCHhHHHHHHHHHhccCChHHHHHHHH
Q 037256 159 GQTDDGCKVFDEMS--VRDLVSWTVMITAYEQAEKPEEALILFQKTQQEG-LLSDSVTIVSVASAVGQLGDVLKAQAVHG 235 (680)
Q Consensus 159 g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 235 (680)
+++++|.+++...- .++...+..++..+.+.++++++.++++.+.... .+++...|..+...+.+.|+.++|...+.
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 77888877776553 2355566777777778888888888877766432 23455556666666677777777777777
Q ss_pred HHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH
Q 037256 236 YAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMME---KRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNP 312 (680)
Q Consensus 236 ~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 312 (680)
.+++.. +.|..+.+.++..+...|+.+++.++++... ..|+..|..+..+|...|+.++|+..|++..... +.|.
T Consensus 171 ~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~ 248 (280)
T PF13429_consen 171 KALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDP 248 (280)
T ss_dssp HHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-H
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-cccc
Confidence 777664 3345566667777777777776655555443 2455666677777777777777777777766542 3345
Q ss_pred hhHHHHHHHHhhhcchHHHHHHHHHH
Q 037256 313 VTALILVSACTYLGSRQLGRKFHGYI 338 (680)
Q Consensus 313 ~t~~~ll~a~~~~g~~~~a~~i~~~~ 338 (680)
.+...+..++...|+.++|.++...+
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHHT---------------
T ss_pred cccccccccccccccccccccccccc
Confidence 55555555555555555555554443
No 44
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.38 E-value=1.3e-09 Score=114.80 Aligned_cols=287 Identities=8% Similarity=0.015 Sum_probs=150.2
Q ss_pred hCCCchHHHHHHHHHHhCCCCCCcc-cHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHH
Q 037256 87 NNGHCVETLELYSTMRRSGISSNSY-TFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGC 165 (680)
Q Consensus 87 ~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~ 165 (680)
..|+++.|.+.+.+..+.. |+.. .+.....+....|+.+.+.+.+....+....+...+.-.....+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 3567777777766655542 3322 222333445566677777777666655432222223333455556666666666
Q ss_pred HHHhcCCC---CChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccC
Q 037256 166 KVFDEMSV---RDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAF 242 (680)
Q Consensus 166 ~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 242 (680)
..++.+.+ .+...+..+...+.+.|++++|.+++..+.+.++.+ ...+..+-.
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~-~~~~~~l~~----------------------- 229 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD-DEEFADLEQ----------------------- 229 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC-HHHHHHHHH-----------------------
Confidence 66665542 244455566666666666666666666666554321 111110000
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHH-HH
Q 037256 243 LEDLCIQNSIVAMYARCGNVEKARLVFDMMEK---RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTAL-IL 318 (680)
Q Consensus 243 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~l 318 (680)
..+..++..-......+...+.++..++ .++..+..+...+...|+.++|.+++++..+. .||..... .+
T Consensus 230 ----~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~ 303 (409)
T TIGR00540 230 ----KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPL 303 (409)
T ss_pred ----HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHH
Confidence 0011111111122234445555555554 37778888888888999999999998888875 34433210 01
Q ss_pred HHHH--hhhcchHHHHHHHHHHHHcCCCCch--HHHHHHHHHHHHcCCHHHHHHHHh--hcCCCCCCHhHHHHHHHHHHh
Q 037256 319 VSAC--TYLGSRQLGRKFHGYIINSNMKIDA--TLRNAVMDMYAKCGDLDTAENMFN--DIHPSERNVSSWNVLIAGYGM 392 (680)
Q Consensus 319 l~a~--~~~g~~~~a~~i~~~~~~~~~~~~~--~~~~~li~~y~k~g~~~~A~~~f~--~~~~~~~~~~~~~~li~~~~~ 392 (680)
+..+ ...++.+.+.+.++...+.. +.|+ ....++...+.+.|++++|.+.|+ ......|+...+..+...+.+
T Consensus 304 l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~ 382 (409)
T TIGR00540 304 CLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQ 382 (409)
T ss_pred HHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHH
Confidence 1111 22344455555555444432 2233 445555666666666666666666 233335555555556666666
Q ss_pred cCChHHHHHHHHHH
Q 037256 393 HGHGRKALEFFSQM 406 (680)
Q Consensus 393 ~g~~~~A~~l~~~m 406 (680)
.|+.++|.+++++.
T Consensus 383 ~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 383 AGDKAEAAAMRQDS 396 (409)
T ss_pred cCCHHHHHHHHHHH
Confidence 66666666665553
No 45
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.37 E-value=1.1e-09 Score=103.06 Aligned_cols=266 Identities=14% Similarity=0.157 Sum_probs=168.7
Q ss_pred CCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCC---ChhHHHHHHHHHHhcCCHHHH
Q 037256 189 AEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLE---DLCIQNSIVAMYARCGNVEKA 265 (680)
Q Consensus 189 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~Li~~y~~~g~~~~A 265 (680)
+.++++|.++|-+|.+.. +.+..+-.++-+.+.+.|..+.|..+|..+.++.--+ .....-.|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 467888888888887742 2233445567777888888888888888877642111 123445667778899999999
Q ss_pred HHHHHhcCCCCh---hHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHh----hHHHHHHHHhhhcchHHHHHHHHHH
Q 037256 266 RLVFDMMEKRDL---ISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPV----TALILVSACTYLGSRQLGRKFHGYI 338 (680)
Q Consensus 266 ~~~f~~m~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~a~~~~g~~~~a~~i~~~~ 338 (680)
+.+|..+.+... .....|+..|.+..+|++|++.-+++...+-.+..+ .|.-+........+.+.|+..++..
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 999998877433 455668889999999999999999888776555433 2344444445556667777777666
Q ss_pred HHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCH--hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 037256 339 INSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNV--SSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHI 416 (680)
Q Consensus 339 ~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 416 (680)
.+.+ +..+..--.+.+.+...|+++.|.+.++.+.+..|+. .+...|..+|.+.|+.++....+.++.+. .++..
T Consensus 207 lqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~--~~g~~ 283 (389)
T COG2956 207 LQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET--NTGAD 283 (389)
T ss_pred HhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--cCCcc
Confidence 6554 2334444455666677777777777777764444543 24566666777777777777777776663 33333
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHH
Q 037256 417 TFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDML 460 (680)
Q Consensus 417 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 460 (680)
.-..+..--....-.+.|..++.+-.+. +|+...+..+++.-
T Consensus 284 ~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~ 325 (389)
T COG2956 284 AELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYH 325 (389)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhh
Confidence 3333333222333344455444443332 56666666666654
No 46
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.37 E-value=2.3e-08 Score=98.86 Aligned_cols=425 Identities=11% Similarity=0.094 Sum_probs=315.7
Q ss_pred CChHHHHHHhhhccCCCC-CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHH
Q 037256 56 GEPNTARSLFNSIHNDKS-YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHG 134 (680)
Q Consensus 56 g~~~~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 134 (680)
+++..|+.+|+....-.. +...|-.-+..=.++.....|..+|++....=+..|.. |-..+..=-..|++..|+++|+
T Consensus 87 ~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdql-WyKY~ymEE~LgNi~gaRqife 165 (677)
T KOG1915|consen 87 KEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL-WYKYIYMEEMLGNIAGARQIFE 165 (677)
T ss_pred HHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH-HHHHHHHHHHhcccHHHHHHHH
Confidence 678899999998876522 67788888888899999999999999988753333433 2233333346789999999999
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC--CCChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHh
Q 037256 135 DIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMS--VRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSV 212 (680)
Q Consensus 135 ~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 212 (680)
.-.+ ..|+...|++.|+.=.+...++.|+.++++.. .|++.+|--....=-++|...-|..+|....+. ..|..
T Consensus 166 rW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~d~ 241 (677)
T KOG1915|consen 166 RWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGDDE 241 (677)
T ss_pred HHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhhHH
Confidence 8876 47999999999999999999999999999864 789999999999889999999999999887764 12222
Q ss_pred ----HHHHHHHHHhccCChHHHHHHHHHHHHccCCCC-hhHHHHHHHHHHhcCCHHHHHHH--------HHhcCCC---C
Q 037256 213 ----TIVSVASAVGQLGDVLKAQAVHGYAICNAFLED-LCIQNSIVAMYARCGNVEKARLV--------FDMMEKR---D 276 (680)
Q Consensus 213 ----t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~Li~~y~~~g~~~~A~~~--------f~~m~~~---~ 276 (680)
.|++...--.....++.|.-++...+..-.... ...|..+...=-+.|+....++. ++.+... |
T Consensus 242 ~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~n 321 (677)
T KOG1915|consen 242 EAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYN 321 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCC
Confidence 333333333455677888888888876532221 34555555555556664443332 2222222 5
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHh-------hHHHHHHHH---hhhcchHHHHHHHHHHHHcCCCCc
Q 037256 277 LISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPV-------TALILVSAC---TYLGSRQLGRKFHGYIINSNMKID 346 (680)
Q Consensus 277 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~ll~a~---~~~g~~~~a~~i~~~~~~~~~~~~ 346 (680)
-.+|--.+..--..|+.+...++|++.... ++|-.. .|.-+=-+| ....+.+.++++++..++ =++..
T Consensus 322 YDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPHk 399 (677)
T KOG1915|consen 322 YDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPHK 399 (677)
T ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCcc
Confidence 567777778778889999999999999865 566321 121111122 346789999999999988 34555
Q ss_pred hHHHHHHHHHH----HHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHH
Q 037256 347 ATLRNAVMDMY----AKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKP-DHITFTSI 421 (680)
Q Consensus 347 ~~~~~~li~~y----~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~l 421 (680)
..++.-+=-+| .++.++..|.+++-......|...++...|..=.+.++++...+++++.++ ..| |..+|...
T Consensus 400 kFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle--~~Pe~c~~W~ky 477 (677)
T KOG1915|consen 400 KFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE--FSPENCYAWSKY 477 (677)
T ss_pred cchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--cChHhhHHHHHH
Confidence 66666555555 468899999999999977789999999999988999999999999999999 556 45688888
Q ss_pred HHHHHccCCHHHHHHHHHHhhhc-CCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHhHHHHHH
Q 037256 422 LSACSHAGLIDEGRKCFADMTKL-SVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM-PLPPNDSVWGALL 489 (680)
Q Consensus 422 l~a~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll 489 (680)
...-...|+.+.|..+|+-.++. ........|.+.|+.=...|.++.|..+++++ ...+-..+|-++.
T Consensus 478 aElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA 547 (677)
T KOG1915|consen 478 AELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFA 547 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHH
Confidence 87778899999999999999886 44445567888888888999999999999987 3344555676554
No 47
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.37 E-value=7.8e-11 Score=121.24 Aligned_cols=273 Identities=12% Similarity=0.086 Sum_probs=206.7
Q ss_pred CHHHHHHHHHhcCC--CCh-hHHHHHHHHHHHcCChhHHHHHHHHHHhCC-C-CCCHhhHHHHHHHHhhhcchHHHHHHH
Q 037256 261 NVEKARLVFDMMEK--RDL-ISWNSMLTGYIQNGQASEALLLFDEMQNSD-C-KPNPVTALILVSACTYLGSRQLGRKFH 335 (680)
Q Consensus 261 ~~~~A~~~f~~m~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~-~p~~~t~~~ll~a~~~~g~~~~a~~i~ 335 (680)
+..+|...|..+++ .|+ ....-+..+|...+++++|.++|+.+.+.. . .-+...|+++|--+-+. .+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 46788888888664 233 344557788999999999999999988642 1 11445666666443221 112222
Q ss_pred -HHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 037256 336 -GYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKP 413 (680)
Q Consensus 336 -~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 413 (680)
+.+++.. +..+.+|.++...|+-.++.+.|.+.|++....+| ...+|+.+..-+.....+|.|...|+..+. +.|
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 2222222 56788999999999999999999999999976666 577899888889999999999999998876 677
Q ss_pred CHH-HHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH---hHHHH-
Q 037256 414 DHI-TFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM-PLPPND---SVWGA- 487 (680)
Q Consensus 414 ~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~---~~~~~- 487 (680)
... .|..+...|.+.++++.|.-.|+++.+.+ +-+.....++...+-+.|+.|+|++++++. .+.|.. ....+
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~ 565 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS 565 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence 765 78888889999999999999999998765 445666777888899999999999999987 333322 22222
Q ss_pred HHHHHHHH--HHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 037256 488 LLLACRIH--GEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKG 541 (680)
Q Consensus 488 ll~a~~~~--~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 541 (680)
++-+.-++ +...++++.++-|++...|.+++.+|.+.|+.+.|..-|.-+.+-+
T Consensus 566 il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 22222222 7778888999999999999999999999999999999999887644
No 48
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.33 E-value=1.5e-07 Score=93.13 Aligned_cols=456 Identities=11% Similarity=0.059 Sum_probs=312.2
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 037256 74 YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVD 153 (680)
Q Consensus 74 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 153 (680)
+...|-.-..-=..++++..|..+|++.+... ..+...|..-+..=.+++.+..|+.+++..+..=...| ..|-..+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHH
Confidence 44455555555556778889999999998754 23555566666666788999999999999988642223 34445555
Q ss_pred HHHhcCChHHHHHHHhcCC--CCChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHH
Q 037256 154 MYAKCGQTDDGCKVFDEMS--VRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQ 231 (680)
Q Consensus 154 ~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 231 (680)
+=-..|++..|+++|++-. +|+...|++.|..=.+-..++.|..+|++..-. .|+..+|.-..+.-.+.|+...+.
T Consensus 150 mEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHH
Confidence 6667899999999999765 689999999999999999999999999998864 699999999988888999999999
Q ss_pred HHHHHHHHc-c-CCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC----CCC-hhHHHHHHHHHHHcCC---hhHHHHH--
Q 037256 232 AVHGYAICN-A-FLEDLCIQNSIVAMYARCGNVEKARLVFDMME----KRD-LISWNSMLTGYIQNGQ---ASEALLL-- 299 (680)
Q Consensus 232 ~~~~~~~~~-g-~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~----~~~-~~~~~~li~~~~~~g~---~~~A~~~-- 299 (680)
.+++.+++. | -..+...+.+....=.++..++.|.-+|.-.. +.. ...|.....-=-+-|+ .++++--
T Consensus 228 ~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 228 SVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 999988764 2 11234455666666667788888888876543 322 2333333333334444 3444332
Q ss_pred ---HHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCch-HHHHHHHHH--------HHHcCCHHHHH
Q 037256 300 ---FDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDA-TLRNAVMDM--------YAKCGDLDTAE 367 (680)
Q Consensus 300 ---~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~-~~~~~li~~--------y~k~g~~~~A~ 367 (680)
++.+...+ +-|-.|+--.+..-...|+.+..+++++.++..-.+... ..|.-.|-. -....+++.+.
T Consensus 308 k~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 308 KFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred hhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 33344333 556667777777777889999999999998865432221 122222211 13467888899
Q ss_pred HHHhhcCCCCCC-HhHHHHHHHHH----HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhh
Q 037256 368 NMFNDIHPSERN-VSSWNVLIAGY----GMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMT 442 (680)
Q Consensus 368 ~~f~~~~~~~~~-~~~~~~li~~~----~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 442 (680)
++|+...+.-|. ..|+.-+--.| .++.+...|.+++...+. .-|-..+|...|..-.+.+.++.+..++++..
T Consensus 387 ~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfl 464 (677)
T KOG1915|consen 387 QVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFL 464 (677)
T ss_pred HHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999887555443 44554443333 466788889888887664 78999999999998899999999999999988
Q ss_pred hcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH----hHHHHHHHHHHHH-----HHHHHHHHHccCCCCCch
Q 037256 443 KLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPND----SVWGALLLACRIH-----GEIAANYLFQLEPEHTGY 513 (680)
Q Consensus 443 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~----~~~~~ll~a~~~~-----~~~~~~~~~~l~p~~~~~ 513 (680)
+-+ +.+..+|......=...|+.+.|..+|+-.-.+|.. ..|.+.|.-=... ++...+++++..+... .
T Consensus 465 e~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-v 542 (677)
T KOG1915|consen 465 EFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-V 542 (677)
T ss_pred hcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-H
Confidence 765 556777877777777889999999999876444532 3444443322111 4555667777666433 5
Q ss_pred HHHHHHHHH-----hcC-----------ChhHHHHHHHHHH
Q 037256 514 FVLMSNIYA-----ASN-----------KWREVGKLREDMK 538 (680)
Q Consensus 514 ~~~l~~~~~-----~~g-----------~~~~A~~~~~~m~ 538 (680)
+...+..-. ..| ....|.++|+...
T Consensus 543 WisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 543 WISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred HHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 555544333 223 4556666666653
No 49
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.33 E-value=2.4e-10 Score=117.72 Aligned_cols=273 Identities=13% Similarity=0.054 Sum_probs=140.8
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC------CChhHHHHHHHHHHhCCCccHHHHHHH
Q 037256 127 LEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSV------RDLVSWTVMITAYEQAEKPEEALILFQ 200 (680)
Q Consensus 127 ~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~ 200 (680)
.+|...|+.+.. .+.-...+...+..+|...+++++|+++|+.+.. .+...|++.+.-+-+ +-++..+.
T Consensus 336 ~~A~~~~~klp~-h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~La 410 (638)
T KOG1126|consen 336 REALNLFEKLPS-HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYLA 410 (638)
T ss_pred HHHHHHHHhhHH-hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHHH
Confidence 445555555222 2222334445555555555555555555555432 144455554443221 11222221
Q ss_pred -HHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhH
Q 037256 201 -KTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLIS 279 (680)
Q Consensus 201 -~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~ 279 (680)
.+... -+-.+.||..+...++-.++.+.|.+.|..+++.. +...++|+.+..=+.....+|.|...|+.....|+..
T Consensus 411 q~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rh 488 (638)
T KOG1126|consen 411 QDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRH 488 (638)
T ss_pred HHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchh
Confidence 11111 11222333333333333333333333333333321 1134444444444455555666666666655544444
Q ss_pred HHH---HHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHH
Q 037256 280 WNS---MLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDM 356 (680)
Q Consensus 280 ~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~ 356 (680)
||+ +...|.+.++++.|.-.|++..+-+ +.+.+....+...
T Consensus 489 YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN------------------------------------P~nsvi~~~~g~~ 532 (638)
T KOG1126|consen 489 YNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN------------------------------------PSNSVILCHIGRI 532 (638)
T ss_pred hHHHHhhhhheeccchhhHHHHHHHhhhcCC------------------------------------ccchhHHhhhhHH
Confidence 433 3445666666666666666655432 2334444455566
Q ss_pred HHHcCCHHHHHHHHhhcCCC-CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHH
Q 037256 357 YAKCGDLDTAENMFNDIHPS-ERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHI-TFTSILSACSHAGLIDEG 434 (680)
Q Consensus 357 y~k~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a 434 (680)
+-+.|+.|+|+++|++.... ..|+..--..+..+...+++++|+..++++++ +.|+.. .|..+...|-+.|+.+.|
T Consensus 533 ~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~A 610 (638)
T KOG1126|consen 533 QHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLA 610 (638)
T ss_pred HHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHH
Confidence 66677777777777766333 33444444455556667778888888888777 667665 455566677778888888
Q ss_pred HHHHHHhhhc
Q 037256 435 RKCFADMTKL 444 (680)
Q Consensus 435 ~~~~~~m~~~ 444 (680)
+.-|.-+.+.
T Consensus 611 l~~f~~A~~l 620 (638)
T KOG1126|consen 611 LLHFSWALDL 620 (638)
T ss_pred HHhhHHHhcC
Confidence 7777777654
No 50
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.32 E-value=1.4e-09 Score=114.94 Aligned_cols=255 Identities=11% Similarity=0.032 Sum_probs=168.4
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCC
Q 037256 96 ELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVRD 175 (680)
Q Consensus 96 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~~~ 175 (680)
.++-.|...|+.||..||..++.-|+..|+.+.|- +|..|.-...+....+++.++......++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45667888899999999999999999999998888 8888877777778888999999888888877765 677
Q ss_pred hhHHHHHHHHHHhCCCccHHHHHHHH-HHH-------cCCCCCHhHHHHHHHHHhccC-Ch------HHHHHHHHHHHHc
Q 037256 176 LVSWTVMITAYEQAEKPEEALILFQK-TQQ-------EGLLSDSVTIVSVASAVGQLG-DV------LKAQAVHGYAICN 240 (680)
Q Consensus 176 ~~~~~~li~~~~~~g~~~~A~~~~~~-m~~-------~g~~p~~~t~~~ll~~~~~~~-~~------~~a~~~~~~~~~~ 240 (680)
..+|+.|..+|.+.|+... ++..++ |.. .|+..-..-+-..++.|...- +. .--+.++...++.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkl 161 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKL 161 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999998765 333333 221 222211122211112211110 00 0011222333333
Q ss_pred cCCCChhHHH-H---HHHHHH-hcCCHHHHHHHHHhcCC-CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhh
Q 037256 241 AFLEDLCIQN-S---IVAMYA-RCGNVEKARLVFDMMEK-RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVT 314 (680)
Q Consensus 241 g~~~~~~~~~-~---Li~~y~-~~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 314 (680)
+....+..++ . .++-.. ....+++-........+ +++.++.+++..-..+|+.+.|..++.+|.+.|++.+.+-
T Consensus 162 l~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~Hy 241 (1088)
T KOG4318|consen 162 LAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHY 241 (1088)
T ss_pred HhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccccc
Confidence 3111111111 0 111111 11223333333333333 7889999999999999999999999999999999999998
Q ss_pred HHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCC
Q 037256 315 ALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGD 362 (680)
Q Consensus 315 ~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~ 362 (680)
|..++-+ .++......+..-|...|+.|+..++.-.+-...+.|.
T Consensus 242 FwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 242 FWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred chhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 8888866 78888888999999999999998888766655555443
No 51
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.32 E-value=5.5e-09 Score=110.54 Aligned_cols=510 Identities=9% Similarity=0.041 Sum_probs=263.3
Q ss_pred CcCC-CCCcchHHHHHHhccccccH--HHHHHHhh------hhhhHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCCC
Q 037256 2 RRLG-PSTEGFYDQLLKSCNFLASL--RQIHSSLT------TSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDK 72 (680)
Q Consensus 2 ~~~~-~~~~~~~~~~l~~~~~~~~~--~~~h~~~~------~~~~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~~ 72 (680)
+..| .||++||.+++..++..|+. -.|...+. +..++++++..-.. . ++.+.|. .
T Consensus 17 e~~gi~PnRvtyqsLiarYc~~gdieaatif~fm~~ksLpv~e~vf~~lv~sh~~-A------nd~Enpk---------e 80 (1088)
T KOG4318|consen 17 EISGILPNRVTYQSLIARYCTKGDIEAATIFPFMEIKSLPVREGVFRGLVASHKE-A------NDAENPK---------E 80 (1088)
T ss_pred HHhcCCCchhhHHHHHHHHcccCCCccccchhhhhcccccccchhHHHHHhcccc-c------ccccCCC---------C
Confidence 4567 79999999999999888776 22444443 77788888887777 6 7766654 4
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHH-HH-------hCCCCCCcccHHHHHHHHhcc-CChH------HHHHHHHHHH
Q 037256 73 SYSFLWNTMIRAYANNGHCVETLELYST-MR-------RSGISSNSYTFPFVLKACASN-SLIL------EGKVVHGDII 137 (680)
Q Consensus 73 p~~~~~~~li~~~~~~g~~~~A~~~~~~-m~-------~~g~~p~~~t~~~ll~~~~~~-~~~~------~a~~~~~~~~ 137 (680)
|...+|+.|..+|.+.|+... ++..++ |. ..|+..-..-|-..+..|-.. .+.. --+.+++..+
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLL 159 (1088)
T ss_pred CchhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHH
Confidence 577789999999999998765 333333 21 223221122222222222111 0111 1122334444
Q ss_pred HhCCCCchhHHHHHHHHHHhc-----CChHHHHHHHhcCC-CCChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCH
Q 037256 138 RTGFLSDSYVQAALVDMYAKC-----GQTDDGCKVFDEMS-VRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDS 211 (680)
Q Consensus 138 ~~g~~~~~~~~~~Li~~~~~~-----g~~~~A~~~f~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 211 (680)
+.+..-.+..++.-...+.+. ..+++-........ .++..+|..++..-.-+|+.+.|..++.+|.+.|++.+.
T Consensus 160 kll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~ 239 (1088)
T KOG4318|consen 160 KLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRA 239 (1088)
T ss_pred HHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccc
Confidence 443111111111111111221 22333333333333 478999999999999999999999999999999999888
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcC
Q 037256 212 VTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNG 291 (680)
Q Consensus 212 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g 291 (680)
.-|-.++-+ .++......+..-|...|+.|+..|+.-.+-.+.+.|....+.+..+.-.--....+..+..+...+.
T Consensus 240 HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k 316 (1088)
T KOG4318|consen 240 HYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANK 316 (1088)
T ss_pred ccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHH
Confidence 877777755 78888888899999999999999999877777776555333322211100011122233333211111
Q ss_pred Ch-----hHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCC---CCchHHHHHHHHHHHHcCCH
Q 037256 292 QA-----SEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNM---KIDATLRNAVMDMYAKCGDL 363 (680)
Q Consensus 292 ~~-----~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~---~~~~~~~~~li~~y~k~g~~ 363 (680)
+. .-....+++..-.|+......|... .-....|.-+...++-..+...-. ..++..+..++.-
T Consensus 317 ~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c-~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrq------- 388 (1088)
T KOG4318|consen 317 RLRQNLRKSVIGSTKKLFLLGTDILEAIWSMC-EKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQ------- 388 (1088)
T ss_pred HHHHHHHHHHHHHhhHHHHhccccchHHHHHH-HHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHH-------
Confidence 11 1122222332223433333222222 222235666666666655542211 1122333333333
Q ss_pred HHHHHHHhhcCCCCCCHh-HHH--H------------HHHHHHhcCChHHHHHHHHHHHHc----CCCC-------CHHH
Q 037256 364 DTAENMFNDIHPSERNVS-SWN--V------------LIAGYGMHGHGRKALEFFSQMLEE----GVKP-------DHIT 417 (680)
Q Consensus 364 ~~A~~~f~~~~~~~~~~~-~~~--~------------li~~~~~~g~~~~A~~l~~~m~~~----g~~p-------~~~t 417 (680)
.|.+. ..++.. .++ . .+.-++..-+...+++-+...... -..| -...
T Consensus 389 -----yFrr~--e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi 461 (1088)
T KOG4318|consen 389 -----YFRRI--ERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDI 461 (1088)
T ss_pred -----HHHHH--HhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHH
Confidence 33332 111110 011 0 000011111111111111111100 0111 1112
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCC-----CCCCHhHHHHHHHHH
Q 037256 418 FTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMP-----LPPNDSVWGALLLAC 492 (680)
Q Consensus 418 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~p~~~~~~~ll~a~ 492 (680)
-+.++..|.+.-+..+++..-+.....-+. ..|..||+.+.+..+.++|..+.++.. ..-|...+..+....
T Consensus 462 ~~ql~l~l~se~n~lK~l~~~ekye~~lf~---g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL 538 (1088)
T KOG4318|consen 462 ANQLHLTLNSEYNKLKILCDEEKYEDLLFA---GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLL 538 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHH
Confidence 345555665555555555444333332221 467777777777777777777777762 112333444455544
Q ss_pred HHHHHH-HHHHHH-------ccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCceeE
Q 037256 493 RIHGEI-AANYLF-------QLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKGLKKPAAFSV 550 (680)
Q Consensus 493 ~~~~~~-~~~~~~-------~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~s~ 550 (680)
.+++.. .+-+++ +..|.-.....-+.+..+..|+.+.-.+.++-+...|+.. .|.-|
T Consensus 539 ~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e-tgPl~ 603 (1088)
T KOG4318|consen 539 QRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE-TGPLW 603 (1088)
T ss_pred HHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh-cccce
Confidence 444211 111111 2233334455567777788999999999999999888865 34444
No 52
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=2.9e-09 Score=105.51 Aligned_cols=218 Identities=13% Similarity=0.085 Sum_probs=162.3
Q ss_pred HHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHH
Q 037256 254 AMYARCGNVEKARLVFDMMEKR---DLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQL 330 (680)
Q Consensus 254 ~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 330 (680)
..+.-+|+.-.|..-|+..... ++..|--+...|.+..+.++..+.|.+....+ +-|+.+|..-.+...-+++++.
T Consensus 334 tF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 334 TFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHH
Confidence 3456678888888888887652 22336677778899999999999999888754 4455666666666667778888
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 037256 331 GRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERN-VSSWNVLIAGYGMHGHGRKALEFFSQMLEE 409 (680)
Q Consensus 331 a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 409 (680)
|..=|+..+... +.+...|-.+.-+..|.+++++++..|++....-|+ +..||-....+...+++++|.+.|+..++
T Consensus 413 A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~- 490 (606)
T KOG0547|consen 413 AIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE- 490 (606)
T ss_pred HHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh-
Confidence 888888887765 446666777777778889999999999998666565 67888888999999999999999999887
Q ss_pred CCCCCH-------HHHHH-HHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256 410 GVKPDH-------ITFTS-ILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM 476 (680)
Q Consensus 410 g~~p~~-------~t~~~-ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 476 (680)
+.|+. .++.. -+-..--.+++..|.+++++..+.. +-....|..|...-.+.|+.++|+++|++.
T Consensus 491 -LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 491 -LEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred -hccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 55552 11111 0111113478889999999888754 333457888999999999999999999875
No 53
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.31 E-value=2.1e-09 Score=101.23 Aligned_cols=297 Identities=12% Similarity=0.123 Sum_probs=170.2
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCC---chhHHHHHHHH
Q 037256 78 WNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLS---DSYVQAALVDM 154 (680)
Q Consensus 78 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~Li~~ 154 (680)
|-.-+..+. ++++++|.++|-+|.+.... +..+-.+|-+.+.+.|..+.|..+|+.+.++.--+ .....-.|..=
T Consensus 39 Yv~GlNfLL-s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~D 116 (389)
T COG2956 39 YVKGLNFLL-SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRD 116 (389)
T ss_pred HHhHHHHHh-hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Confidence 433333333 46789999999999875322 34455567777889999999999999888752111 11233446666
Q ss_pred HHhcCChHHHHHHHhcCCCCC---hhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhH----HHHHHHHHhccCCh
Q 037256 155 YAKCGQTDDGCKVFDEMSVRD---LVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVT----IVSVASAVGQLGDV 227 (680)
Q Consensus 155 ~~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~~~~~~~~~ 227 (680)
|...|-+|.|+.+|..+.+.. ..+...|+..|-+..+|++|++.-+++.+.+-.+..+- |.-+........++
T Consensus 117 ym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~ 196 (389)
T COG2956 117 YMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDV 196 (389)
T ss_pred HHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhH
Confidence 888899999999999887632 34667788999999999999999998887765544332 33333444444555
Q ss_pred HHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 037256 228 LKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSD 307 (680)
Q Consensus 228 ~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 307 (680)
+.|...+....+.+ +..+..--.+.+.+ ...|+++.|++.++...+.+
T Consensus 197 d~A~~~l~kAlqa~-~~cvRAsi~lG~v~-------------------------------~~~g~y~~AV~~~e~v~eQn 244 (389)
T COG2956 197 DRARELLKKALQAD-KKCVRASIILGRVE-------------------------------LAKGDYQKAVEALERVLEQN 244 (389)
T ss_pred HHHHHHHHHHHhhC-ccceehhhhhhHHH-------------------------------HhccchHHHHHHHHHHHHhC
Confidence 55555555554443 22223333334444 44455555555555444443
Q ss_pred CCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHH
Q 037256 308 CKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLI 387 (680)
Q Consensus 308 ~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li 387 (680)
..--+.+...+..+|...|+.+.+...+..+.+... ....-+.+-+.-....-.+.|.....+-...+|+...+..+|
T Consensus 245 ~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~--g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~ 322 (389)
T COG2956 245 PEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT--GADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLM 322 (389)
T ss_pred hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC--CccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHH
Confidence 222223333444444444444444444444433221 122222233333333445555555555544577777777777
Q ss_pred HHHH---hcCChHHHHHHHHHHHHcC
Q 037256 388 AGYG---MHGHGRKALEFFSQMLEEG 410 (680)
Q Consensus 388 ~~~~---~~g~~~~A~~l~~~m~~~g 410 (680)
..-. ..|...+.+.+++.|..+.
T Consensus 323 ~~~l~daeeg~~k~sL~~lr~mvge~ 348 (389)
T COG2956 323 DYHLADAEEGRAKESLDLLRDMVGEQ 348 (389)
T ss_pred HhhhccccccchhhhHHHHHHHHHHH
Confidence 6543 3345666666777776543
No 54
>PF13041 PPR_2: PPR repeat family
Probab=99.28 E-value=9.4e-12 Score=87.29 Aligned_cols=50 Identities=32% Similarity=0.634 Sum_probs=46.2
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 037256 378 RNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSH 427 (680)
Q Consensus 378 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 427 (680)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||++++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999999999999999999999999874
No 55
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.26 E-value=2.1e-08 Score=97.63 Aligned_cols=302 Identities=12% Similarity=0.069 Sum_probs=209.1
Q ss_pred HHHHHHHHh--CCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 037256 79 NTMIRAYAN--NGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYA 156 (680)
Q Consensus 79 ~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~ 156 (680)
..+..++.+ .|+|..|.++..+-.+.+-.| ...|.....+.-+.|+.+.+-+++.++.+..-.++..++-+......
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll 164 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLL 164 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence 345555544 689999999998887776554 23455556667788899999999988887644666677777778888
Q ss_pred hcCChHHHHHHHhcC---CCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHH
Q 037256 157 KCGQTDDGCKVFDEM---SVRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAV 233 (680)
Q Consensus 157 ~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 233 (680)
..|+.+.|+.-.++. ..++........++|.+.|++.+.+.+...|.+.|+--|... .++
T Consensus 165 ~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~-----------------~~l 227 (400)
T COG3071 165 NRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA-----------------ARL 227 (400)
T ss_pred hCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH-----------------HHH
Confidence 888888888776654 456777888888999999999999999998888876444321 111
Q ss_pred HHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC
Q 037256 234 HGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEK---RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKP 310 (680)
Q Consensus 234 ~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 310 (680)
...+++.+++-....+..+.-...++..+. .++..-.+++.-+.+.|+.++|.++..+..+.+..|
T Consensus 228 -----------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~ 296 (400)
T COG3071 228 -----------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDP 296 (400)
T ss_pred -----------HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCh
Confidence 011233333333333333444445555553 356666677778888888888888888888777666
Q ss_pred CHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHH
Q 037256 311 NPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGY 390 (680)
Q Consensus 311 ~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~ 390 (680)
+..+ +-.+.+.++.+.-.+..+...+.. +.++..+.+|...|.+.+.+.+|...|+...+..|+..+|+-+..+|
T Consensus 297 ~L~~----~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~ 371 (400)
T COG3071 297 RLCR----LIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADAL 371 (400)
T ss_pred hHHH----HHhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHH
Confidence 6222 223455566655555555544432 34557788888888888888888888888877788888888888888
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCC
Q 037256 391 GMHGHGRKALEFFSQMLEEGVKPD 414 (680)
Q Consensus 391 ~~~g~~~~A~~l~~~m~~~g~~p~ 414 (680)
.+.|+..+|.+.+++....-.+|+
T Consensus 372 ~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 372 DQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred HHcCChHHHHHHHHHHHHHhcCCC
Confidence 888888888888887765434443
No 56
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.25 E-value=2.4e-08 Score=97.20 Aligned_cols=281 Identities=15% Similarity=0.128 Sum_probs=202.6
Q ss_pred CCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 037256 189 AEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLV 268 (680)
Q Consensus 189 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~ 268 (680)
.|++.+|.++..+-.+.+-.| ...|.....+.-..||.+.+-.++.++-+..-.++..+.-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 366777777766655554322 3345555566667777777777777777665466666777777777888888888776
Q ss_pred HHhcC---CCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH-------hhHHHHHHHHhhhcchHHHHHHHHHH
Q 037256 269 FDMME---KRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNP-------VTALILVSACTYLGSRQLGRKFHGYI 338 (680)
Q Consensus 269 f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~a~~~~g~~~~a~~i~~~~ 338 (680)
.++.. .+++........+|.+.|++.+...++..|.+.|+--|+ .++..+++-+...+..+.-.+.++..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 66654 357778888888999999999999999999888765543 46677777666666666655566555
Q ss_pred HHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH
Q 037256 339 INSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITF 418 (680)
Q Consensus 339 ~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 418 (680)
.+. ...++.+-.+++.-+.++|+.++|.++..+..+...|.. -...-.+.+-++.+.-++..++-... .+-++-.+
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L~ 331 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDPLLL 331 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHHHhhcCCCCchHHHHHHHHHHHh-CCCChhHH
Confidence 332 244566777888889999999999999888865555554 11222345667777777777666553 22233577
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256 419 TSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM 476 (680)
Q Consensus 419 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 476 (680)
.+|-.-|.+.+.+.+|...|+...+ ..|+..+|+-+.++|.+.|+.++|.++.++.
T Consensus 332 ~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~ 387 (400)
T COG3071 332 STLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREA 387 (400)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence 7888889999999999999996665 5799999999999999999999999988764
No 57
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.24 E-value=3.3e-07 Score=94.50 Aligned_cols=422 Identities=14% Similarity=0.124 Sum_probs=272.6
Q ss_pred hhHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCCCCC-cchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHH
Q 037256 36 GLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKSY-SFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFP 114 (680)
Q Consensus 36 ~~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 114 (680)
..+...+..|-. +++...++..+.+..+.|. ..|.....-.+...|+-++|.+..+.-.+..+. +.+.|.
T Consensus 9 ~lF~~~lk~yE~--------kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwH 79 (700)
T KOG1156|consen 9 ALFRRALKCYET--------KQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWH 79 (700)
T ss_pred HHHHHHHHHHHH--------HHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHH
Confidence 455566777777 7787778887777777553 233333333455678899999988887776544 677888
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHhCCC
Q 037256 115 FVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMS---VRDLVSWTVMITAYEQAEK 191 (680)
Q Consensus 115 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~ 191 (680)
.+--.+...+++++|...+..+++.+ +.+...+.-|--.-++.|+++.....-.... ......|..++.++.-.|+
T Consensus 80 v~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~ 158 (700)
T KOG1156|consen 80 VLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGE 158 (700)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 88777788889999999999988876 4556677666555566677666555544333 3456789999999999999
Q ss_pred ccHHHHHHHHHHHcC-CCCCHhHHHHHH------HHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHH
Q 037256 192 PEEALILFQKTQQEG-LLSDSVTIVSVA------SAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEK 264 (680)
Q Consensus 192 ~~~A~~~~~~m~~~g-~~p~~~t~~~ll------~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~ 264 (680)
+..|..+.++..+.. -.|+...|.... ......|.++.+.+.+...... +......--.-.+.+.+.+++++
T Consensus 159 y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEe 237 (700)
T KOG1156|consen 159 YKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEE 237 (700)
T ss_pred HHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHh
Confidence 999999999987654 346666554433 2335667777777665543322 22223333455678889999999
Q ss_pred HHHHHHhcCC--CChhHHHHHH-HHHHHcCChhHHH-HHHHHHHhCCCCCCHhhHHHH-HHHHhhhcchHHHHHHHHHHH
Q 037256 265 ARLVFDMMEK--RDLISWNSML-TGYIQNGQASEAL-LLFDEMQNSDCKPNPVTALIL-VSACTYLGSRQLGRKFHGYII 339 (680)
Q Consensus 265 A~~~f~~m~~--~~~~~~~~li-~~~~~~g~~~~A~-~~~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~~~a~~i~~~~~ 339 (680)
|..++..+.. ||..-|+-.. .++.+-.+.-+++ .+|....+. .|.......+ ++......-.+....++....
T Consensus 238 A~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l 315 (700)
T KOG1156|consen 238 AVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLL 315 (700)
T ss_pred HHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHh
Confidence 9999999876 4445554443 4443444444454 556555442 1111110000 111112222334445556666
Q ss_pred HcCCCCchHHHHHHHHHHHHcCCHHH----HHHHHhhcCC------------CCCCHhHHHH--HHHHHHhcCChHHHHH
Q 037256 340 NSNMKIDATLRNAVMDMYAKCGDLDT----AENMFNDIHP------------SERNVSSWNV--LIAGYGMHGHGRKALE 401 (680)
Q Consensus 340 ~~~~~~~~~~~~~li~~y~k~g~~~~----A~~~f~~~~~------------~~~~~~~~~~--li~~~~~~g~~~~A~~ 401 (680)
+.|+++ ++..+...|-.-...+- +..+...+.. ..|....|+. ++..|-..|+++.|+.
T Consensus 316 ~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~ 392 (700)
T KOG1156|consen 316 SKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALE 392 (700)
T ss_pred hcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHH
Confidence 777653 33334444432211111 1111222211 1455556654 5677889999999999
Q ss_pred HHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256 402 FFSQMLEEGVKPDHI-TFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM 476 (680)
Q Consensus 402 l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 476 (680)
.++.... ..|+.+ -|..=.+.+.+.|++++|..++++..+.+ .||...-+--+.-..|+.+.++|.++....
T Consensus 393 yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skF 465 (700)
T KOG1156|consen 393 YIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKF 465 (700)
T ss_pred HHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHh
Confidence 9999988 678876 66666788999999999999999998875 577666556667778999999999888776
No 58
>PF13041 PPR_2: PPR repeat family
Probab=99.23 E-value=1.4e-11 Score=86.39 Aligned_cols=50 Identities=28% Similarity=0.602 Sum_probs=47.5
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 037256 73 SYSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACAS 122 (680)
Q Consensus 73 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 122 (680)
||+++||++|++|++.|++++|+++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999874
No 59
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1.5e-07 Score=95.44 Aligned_cols=255 Identities=11% Similarity=0.037 Sum_probs=196.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHH
Q 037256 280 WNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAK 359 (680)
Q Consensus 280 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k 359 (680)
...-..-+-..+++.+.+++++...+.. ++....+..-|..+...|+..+-..+-..+++. .|..+.+|-++.--|.-
T Consensus 247 l~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~ 324 (611)
T KOG1173|consen 247 LAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLM 324 (611)
T ss_pred HHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHH
Confidence 3344455677889999999999988763 555555555666777777766666555556554 36778899999999999
Q ss_pred cCCHHHHHHHHhhcCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHH
Q 037256 360 CGDLDTAENMFNDIHPSERN-VSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH-ITFTSILSACSHAGLIDEGRKC 437 (680)
Q Consensus 360 ~g~~~~A~~~f~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~ 437 (680)
.|+..+|++.|.+.....|. ...|-.....|+-.|..++|+..+...-+ +-|.. .-+.-+.--|.+.++.+.|.++
T Consensus 325 i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAar--l~~G~hlP~LYlgmey~~t~n~kLAe~F 402 (611)
T KOG1173|consen 325 IGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAAR--LMPGCHLPSLYLGMEYMRTNNLKLAEKF 402 (611)
T ss_pred hcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHH--hccCCcchHHHHHHHHHHhccHHHHHHH
Confidence 99999999999998545554 56899999999999999999999988776 33332 2333344568889999999999
Q ss_pred HHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCC-----CCC----CHhHHHHHHHHHHHH-----HHHHHHHH
Q 037256 438 FADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMP-----LPP----NDSVWGALLLACRIH-----GEIAANYL 503 (680)
Q Consensus 438 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~p----~~~~~~~ll~a~~~~-----~~~~~~~~ 503 (680)
|.+..... +.|+...+-+.-.....+.+.+|..+|+..- ..+ -..+|+.|-.+|++. |...+++.
T Consensus 403 f~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~a 481 (611)
T KOG1173|consen 403 FKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKA 481 (611)
T ss_pred HHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 99887642 4456667777777778889999999988751 111 234566777777776 67778999
Q ss_pred HccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 037256 504 FQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKN 539 (680)
Q Consensus 504 ~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 539 (680)
+.+.|.++.+|..++-+|...|+++.|++.|.+...
T Consensus 482 L~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 482 LLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 999999999999999999999999999999998764
No 60
>PRK12370 invasion protein regulator; Provisional
Probab=99.20 E-value=5.1e-09 Score=114.54 Aligned_cols=244 Identities=12% Similarity=0.009 Sum_probs=171.5
Q ss_pred ChhHHHHHHHHHHhCCCCCC-HhhHHHHHHHHh---------hhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcC
Q 037256 292 QASEALLLFDEMQNSDCKPN-PVTALILVSACT---------YLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCG 361 (680)
Q Consensus 292 ~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~---------~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g 361 (680)
..++|.++|++..+. .|+ ...+..+..++. ..+++++|...++.+++.+ +.+...+..+..++...|
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 457888889888865 454 334444443332 2345788999999888876 557788888888999999
Q ss_pred CHHHHHHHHhhcCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHH
Q 037256 362 DLDTAENMFNDIHPSERN-VSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHI-TFTSILSACSHAGLIDEGRKCFA 439 (680)
Q Consensus 362 ~~~~A~~~f~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~ 439 (680)
++++|...|++.....|+ ...|..+...+...|++++|+..+++..+ +.|+.. .+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 999999999998666665 66788888999999999999999999998 567643 33344445667899999999999
Q ss_pred HhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHhHHHHHHH-HHHHHH---HHHHHHHHccCCCCCchH
Q 037256 440 DMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM-PLPPNDSVWGALLL-ACRIHG---EIAANYLFQLEPEHTGYF 514 (680)
Q Consensus 440 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~-a~~~~~---~~~~~~~~~l~p~~~~~~ 514 (680)
++.+..-+-+...+..+...|...|++++|.+.++++ +..|+.......+. .+...+ ...++++++..-..+...
T Consensus 431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~a~~~l~~ll~~~~~~~~~~ 510 (553)
T PRK12370 431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSERALPTIREFLESEQRIDNNP 510 (553)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHHHHHHHHHHHHHHhhHhhcCc
Confidence 9876532224555777888899999999999999887 55566554444443 333333 333444444222222223
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCC
Q 037256 515 VLMSNIYAASNKWREVGKLREDMKNKG 541 (680)
Q Consensus 515 ~~l~~~~~~~g~~~~A~~~~~~m~~~g 541 (680)
..+..+|+-.|+-+.+... +++.+.+
T Consensus 511 ~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 511 GLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 3367778888887777766 7776654
No 61
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.15 E-value=4.8e-06 Score=85.90 Aligned_cols=476 Identities=10% Similarity=0.082 Sum_probs=283.3
Q ss_pred cCCCChHHHHHHhhhccCCCC---CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHH
Q 037256 53 TTYGEPNTARSLFNSIHNDKS---YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEG 129 (680)
Q Consensus 53 ~~~g~~~~A~~~f~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 129 (680)
.+.|++..-+..|+.....-| -...|...+.-..+.|-++-++.+|++-++. .|. .-.--+.-++..+++++|
T Consensus 113 ~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P~--~~eeyie~L~~~d~~~ea 188 (835)
T KOG2047|consen 113 IKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--APE--AREEYIEYLAKSDRLDEA 188 (835)
T ss_pred HhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CHH--HHHHHHHHHHhccchHHH
Confidence 344888999999987765544 2346888888888889999999999998764 332 245566777888999999
Q ss_pred HHHHHHHHHhC------CCCchhHHHHHHHHHHhcCCh---HHHHHHHhcCCCC--C--hhHHHHHHHHHHhCCCccHHH
Q 037256 130 KVVHGDIIRTG------FLSDSYVQAALVDMYAKCGQT---DDGCKVFDEMSVR--D--LVSWTVMITAYEQAEKPEEAL 196 (680)
Q Consensus 130 ~~~~~~~~~~g------~~~~~~~~~~Li~~~~~~g~~---~~A~~~f~~~~~~--~--~~~~~~li~~~~~~g~~~~A~ 196 (680)
.+.++.++... -+.+-..|..+-+..++.-+. -....++..+..+ | -..|++|...|.+.|.+++|-
T Consensus 189 a~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekar 268 (835)
T KOG2047|consen 189 AQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKAR 268 (835)
T ss_pred HHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 88888776431 144556677666666654332 2344455555433 3 347999999999999999999
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHhcc----------------CC------hHHHHHHHHHHHHccC-----------C
Q 037256 197 ILFQKTQQEGLLSDSVTIVSVASAVGQL----------------GD------VLKAQAVHGYAICNAF-----------L 243 (680)
Q Consensus 197 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~----------------~~------~~~a~~~~~~~~~~g~-----------~ 243 (680)
++|++..+.- .+...|+.+..+|+.- ++ ++....-++.+..... +
T Consensus 269 Dvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~ 346 (835)
T KOG2047|consen 269 DVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNP 346 (835)
T ss_pred HHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCC
Confidence 9999887652 3333444444444321 11 1222222333322210 1
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---C------ChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC---
Q 037256 244 EDLCIQNSIVAMYARCGNVEKARLVFDMMEK---R------DLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPN--- 311 (680)
Q Consensus 244 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--- 311 (680)
.++..|..-+.. ..|+..+-...|.+..+ | -...|..+...|-.+|+.+.|..+|++..+...+--
T Consensus 347 ~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dL 424 (835)
T KOG2047|consen 347 HNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDL 424 (835)
T ss_pred ccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHH
Confidence 112222222211 12344444444444332 1 123577777777788888888888877765432111
Q ss_pred HhhHHHHHHHHhhhcchHHHHHHHHHHHHc-----------CCCC------chHHHHHHHHHHHHcCCHHHHHHHHhhcC
Q 037256 312 PVTALILVSACTYLGSRQLGRKFHGYIINS-----------NMKI------DATLRNAVMDMYAKCGDLDTAENMFNDIH 374 (680)
Q Consensus 312 ~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~-----------~~~~------~~~~~~~li~~y~k~g~~~~A~~~f~~~~ 374 (680)
..+|......=.+..+++.|..+.+..... +.++ +..+|..+++.--..|-++....+++++.
T Consensus 425 a~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdrii 504 (835)
T KOG2047|consen 425 AEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRII 504 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 112222222223445566666665554321 1111 23455566666667788888888888874
Q ss_pred CCC-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHc---cCCHHHHHHHHHHhhhcCCCcC
Q 037256 375 PSE-RNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHI-TFTSILSACSH---AGLIDEGRKCFADMTKLSVKPE 449 (680)
Q Consensus 375 ~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~---~g~~~~a~~~~~~m~~~~~~p~ 449 (680)
+.. .++..--....-+-.+.-++++.+.+++-+..=-.|+.. .|+..|.-+.+ .-.++.|..+|++..+ |.+|.
T Consensus 505 dLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~ 583 (835)
T KOG2047|consen 505 DLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPE 583 (835)
T ss_pred HHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHH
Confidence 331 111111111122335566788888887655542335554 56666654432 3478999999999998 65554
Q ss_pred hHHHHHHHHHHH----hcCCHHHHHHHHHhCC--CCCC--HhHHHHHHHHHHHH-----HHHHHHHHHccCCCCCch--H
Q 037256 450 VKHYACMVDMLG----RAGCLYEAFDMIKQMP--LPPN--DSVWGALLLACRIH-----GEIAANYLFQLEPEHTGY--F 514 (680)
Q Consensus 450 ~~~~~~li~~~~----~~g~~~~A~~~~~~m~--~~p~--~~~~~~ll~a~~~~-----~~~~~~~~~~l~p~~~~~--~ 514 (680)
.. .++--.|+ +-|....|+.++++.. .++. ...||..|.--... -+...+++++.-|++..- .
T Consensus 584 ~a--KtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mc 661 (835)
T KOG2047|consen 584 HA--KTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMC 661 (835)
T ss_pred HH--HHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHH
Confidence 32 22333343 4688889999999983 3332 23566666544333 366788999988876543 3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHh
Q 037256 515 VLMSNIYAASNKWREVGKLREDMKN 539 (680)
Q Consensus 515 ~~l~~~~~~~g~~~~A~~~~~~m~~ 539 (680)
.-.+++-.+.|..+.|..++..-.+
T Consensus 662 lrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 662 LRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred HHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 3467778899999999999987654
No 62
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.14 E-value=1.5e-08 Score=98.06 Aligned_cols=156 Identities=12% Similarity=0.073 Sum_probs=82.0
Q ss_pred HHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCC---CCCHhHHHHHHHHHHhc
Q 037256 317 ILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPS---ERNVSSWNVLIAGYGMH 393 (680)
Q Consensus 317 ~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~---~~~~~~~~~li~~~~~~ 393 (680)
.+...+...|+++.|.+.+....+.. +.+...+..+...|...|++++|.+.|++.... ......+..+...+...
T Consensus 70 ~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 148 (234)
T TIGR02521 70 ALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKA 148 (234)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHc
Confidence 33333344444444444444433332 223334444555555556666666666555322 11233455555566666
Q ss_pred CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHH
Q 037256 394 GHGRKALEFFSQMLEEGVKPD-HITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDM 472 (680)
Q Consensus 394 g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 472 (680)
|++++|.+.+++..+. .|+ ...+..+...+...|++++|...+++..+. .+.+...+..+...+...|+.++|..+
T Consensus 149 g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~ 225 (234)
T TIGR02521 149 GDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRY 225 (234)
T ss_pred CCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHH
Confidence 6666666666666653 333 335555556666666666666666666554 233445555556666666666666666
Q ss_pred HHhC
Q 037256 473 IKQM 476 (680)
Q Consensus 473 ~~~m 476 (680)
.+.+
T Consensus 226 ~~~~ 229 (234)
T TIGR02521 226 GAQL 229 (234)
T ss_pred HHHH
Confidence 5543
No 63
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.12 E-value=2.5e-08 Score=96.39 Aligned_cols=198 Identities=15% Similarity=0.100 Sum_probs=160.5
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 037256 244 EDLCIQNSIVAMYARCGNVEKARLVFDMMEK---RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVS 320 (680)
Q Consensus 244 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 320 (680)
.....+..+...|...|++++|.+.|++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 3456778888999999999999999998754 356778888899999999999999999988764 445667777888
Q ss_pred HHhhhcchHHHHHHHHHHHHcCC-CCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHH
Q 037256 321 ACTYLGSRQLGRKFHGYIINSNM-KIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRK 398 (680)
Q Consensus 321 a~~~~g~~~~a~~i~~~~~~~~~-~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~ 398 (680)
.+...|++++|.+.+..+.+... +.....+..+...|.+.|++++|.+.|++.....| +...|..+...+...|++++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 88999999999999999887532 23455677788899999999999999998855544 46678888899999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhh
Q 037256 399 ALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTK 443 (680)
Q Consensus 399 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 443 (680)
|...+++..+. .+++...+..+...+...|+.++|..+.+.+..
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999999885 233455666777788889999999998887764
No 64
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=1.8e-06 Score=84.31 Aligned_cols=299 Identities=10% Similarity=-0.022 Sum_probs=206.0
Q ss_pred CCCHhHHHHHHHHHhc--cCChHHHHHHHHHHHH-ccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHH-
Q 037256 208 LSDSVTIVSVASAVGQ--LGDVLKAQAVHGYAIC-NAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSM- 283 (680)
Q Consensus 208 ~p~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~-~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~l- 283 (680)
+|+..+....+.+++. .++-..+.+.+-.+.+ .-++.|+....++.++|...|+.++|...|++...-|+.+..+|
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD 270 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMD 270 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHH
Confidence 3444444445555443 3444444444444433 34677888999999999999999999999999877665554443
Q ss_pred --HHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcC
Q 037256 284 --LTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCG 361 (680)
Q Consensus 284 --i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g 361 (680)
.-.+.+.|+.++...+...+.... +-+...|..-+...-...+++.|..+-...++.+ +.+...+-.-..++...|
T Consensus 271 ~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~ 348 (564)
T KOG1174|consen 271 LYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALE 348 (564)
T ss_pred HHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhcc
Confidence 234567889998888888776532 1222233333344456678888888888777655 334444444456778889
Q ss_pred CHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHH-ccCCHHHHHHHH
Q 037256 362 DLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSIL-SACS-HAGLIDEGRKCF 438 (680)
Q Consensus 362 ~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~a~~-~~g~~~~a~~~~ 438 (680)
+.++|.-.|+......| +..+|.-|+..|...|++.+|.-+-+..... +.-+..+.+.+- ..|. ...--++|..++
T Consensus 349 R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ 427 (564)
T KOG1174|consen 349 RHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFA 427 (564)
T ss_pred chHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHH
Confidence 99999999998865654 6889999999999999999999888876663 344555655442 3333 233457888888
Q ss_pred HHhhhcCCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHHH-----HHHHHHHHHccCCCCC
Q 037256 439 ADMTKLSVKPE-VKHYACMVDMLGRAGCLYEAFDMIKQM-PLPPNDSVWGALLLACRIH-----GEIAANYLFQLEPEHT 511 (680)
Q Consensus 439 ~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~a~~~~-----~~~~~~~~~~l~p~~~ 511 (680)
++-.+. .|+ ....+.+...+.+.|+.++++.++++. ...||....+.|-.-.+.. +...+..++.++|+|.
T Consensus 428 ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 428 EKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred Hhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence 887754 444 345567778899999999999999886 6678887777766655543 5666778888899874
No 65
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=1.2e-06 Score=89.56 Aligned_cols=430 Identities=11% Similarity=0.092 Sum_probs=239.9
Q ss_pred HHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHH--HHHHHH--h
Q 037256 82 IRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAA--LVDMYA--K 157 (680)
Q Consensus 82 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--Li~~~~--~ 157 (680)
+..+..+|.+++|.....++...+ +-+...+..-+-+..+.+.+++|..+.+ ..+. ..+++. +=.+|+ +
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ik---k~~~---~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIK---KNGA---LLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHH---hcch---hhhcchhhHHHHHHHHH
Confidence 344566778888888888887654 2245556666666777777777774432 2211 111111 233443 6
Q ss_pred cCChHHHHHHHhcCCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHh-HHHHHHHHHhccCChHHHHHHHHH
Q 037256 158 CGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSV-TIVSVASAVGQLGDVLKAQAVHGY 236 (680)
Q Consensus 158 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~ 236 (680)
.+..++|...++.....+..+...-...+.+.|++++|+++|+.+.+.+..--.. .-..++.+-... .+ + .
T Consensus 92 lnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l----~~-~---~ 163 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL----QV-Q---L 163 (652)
T ss_pred cccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh----hH-H---H
Confidence 7888899888885555555566666777888899999999999987765432111 111122111110 00 0 1
Q ss_pred HHHccCCCChhHHHH---HHHHHHhcCCHHHHHHHHHhc--------CCCC-----hh-----HHHHHHHHHHHcCChhH
Q 037256 237 AICNAFLEDLCIQNS---IVAMYARCGNVEKARLVFDMM--------EKRD-----LI-----SWNSMLTGYIQNGQASE 295 (680)
Q Consensus 237 ~~~~g~~~~~~~~~~---Li~~y~~~g~~~~A~~~f~~m--------~~~~-----~~-----~~~~li~~~~~~g~~~~ 295 (680)
+......| ..+|.. ....+...|++.+|+++++.. .+.| +. .---|.-.+...|+.++
T Consensus 164 ~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 164 LQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred HHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 11111122 222222 344667889999999988877 1111 11 11224456778899999
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHH---HHHHhhhcchHH--HHHHH------------HHHHHcCCCCchHHHHHHHHHHH
Q 037256 296 ALLLFDEMQNSDCKPNPVTALIL---VSACTYLGSRQL--GRKFH------------GYIINSNMKIDATLRNAVMDMYA 358 (680)
Q Consensus 296 A~~~~~~m~~~g~~p~~~t~~~l---l~a~~~~g~~~~--a~~i~------------~~~~~~~~~~~~~~~~~li~~y~ 358 (680)
|.+++...+... .+|....... |-+.....++-. ....+ ..+.+. -......-+.++.+|.
T Consensus 243 a~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~-qk~~i~~N~~lL~l~t 320 (652)
T KOG2376|consen 243 ASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKK-QKQAIYRNNALLALFT 320 (652)
T ss_pred HHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 999999998775 4554222111 122222111111 11111 111110 0111222345556654
Q ss_pred HcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHH-hcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCCHHHHH
Q 037256 359 KCGDLDTAENMFNDIHPSERNVSSWNVLIAGYG-MHGHGRKALEFFSQMLEEGVKPDH--ITFTSILSACSHAGLIDEGR 435 (680)
Q Consensus 359 k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~ 435 (680)
+..+.+.++-.......|....=+.+..++. +...+.+|.+++...-+. .|.. +.....+......|+++.|.
T Consensus 321 --nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~ 396 (652)
T KOG2376|consen 321 --NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVAL 396 (652)
T ss_pred --hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHH
Confidence 4566777777766433455444444444433 223577888888777663 4444 34445556678899999999
Q ss_pred HHHH--------HhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-----CCCCCHhHHHHHHHH---HH-HH---
Q 037256 436 KCFA--------DMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM-----PLPPNDSVWGALLLA---CR-IH--- 495 (680)
Q Consensus 436 ~~~~--------~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-----~~~p~~~~~~~ll~a---~~-~~--- 495 (680)
+++. ...+.+..| .+-..++..|.+.++-+.|-+++.+. .-.+......+++.- +- ++
T Consensus 397 ~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~ 474 (652)
T KOG2376|consen 397 EILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNE 474 (652)
T ss_pred HHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCch
Confidence 9998 554444444 45566788888887766555555443 011122222222221 11 11
Q ss_pred --HHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHH
Q 037256 496 --GEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLRED 536 (680)
Q Consensus 496 --~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 536 (680)
+...++++++.+|++....+.++.+|++.. .+.|+.+-+.
T Consensus 475 ~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l~k~ 516 (652)
T KOG2376|consen 475 EEASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAESLSKK 516 (652)
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHHhhc
Confidence 455677888899999999999999998764 4566555443
No 66
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=1e-07 Score=96.61 Aligned_cols=264 Identities=13% Similarity=0.067 Sum_probs=167.4
Q ss_pred CChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHH
Q 037256 174 RDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIV 253 (680)
Q Consensus 174 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li 253 (680)
.|+...-.-..-+...+++.+.+++++...+.. +++...+..-|..+...|+..+-..+-..+++. .+....+|-++.
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg 319 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVG 319 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHH
Confidence 355555666677778889999999998887763 455555555566666777766655555555554 466788889999
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCC---hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHH
Q 037256 254 AMYARCGNVEKARLVFDMMEKRD---LISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQL 330 (680)
Q Consensus 254 ~~y~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 330 (680)
-.|.-.|+.++|++.|.+...-| ...|-.....|+-.|..++|+..+...-+.- +-...-+.-+.--|.+.++++.
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHH
Confidence 98988999999999999876543 3679999999999999999999887765431 1111111222234566777788
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCC-------C-CHhHHHHHHHHHHhcCChHHHHHH
Q 037256 331 GRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSE-------R-NVSSWNVLIAGYGMHGHGRKALEF 402 (680)
Q Consensus 331 a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~-------~-~~~~~~~li~~~~~~g~~~~A~~l 402 (680)
|.++|.+..... +.|+.+.+-+.-+..+.+.+.+|...|+...... + -..+++.|..+|.+.+.+++|+..
T Consensus 399 Ae~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 399 AEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 888877776543 5567777777777777777777777777652110 0 112344455555555555555555
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhh
Q 037256 403 FSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMT 442 (680)
Q Consensus 403 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 442 (680)
+++.+.. .+-|..|+.++.-.+...|+++.|.+.|.+..
T Consensus 478 ~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 478 YQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 5555542 12233344444444555555555555554433
No 67
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.10 E-value=1.7e-05 Score=82.05 Aligned_cols=451 Identities=14% Similarity=0.145 Sum_probs=257.8
Q ss_pred hHHHHHHhhhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHhC-CCCCCcccHHHHHHHHhccCChHHHHHHHHHH
Q 037256 58 PNTARSLFNSIHNDKSYSFLWNTMIRAYANNGHCVETLELYSTMRRS-GISSNSYTFPFVLKACASNSLILEGKVVHGDI 136 (680)
Q Consensus 58 ~~~A~~~f~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 136 (680)
++.+......||.. |-.-+.-+..+|+.......|++.+.. .+.-....|...+......+-.+.+..+++..
T Consensus 91 ~er~lv~mHkmpRI------wl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRY 164 (835)
T KOG2047|consen 91 FERCLVFMHKMPRI------WLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRY 164 (835)
T ss_pred HHHHHHHHhcCCHH------HHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHH
Confidence 44555555666654 888888888999999999999887653 23334567888888888888888899999888
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCC----------hhHHHHHHHHHHhCCCccH---HHHHHHHHH
Q 037256 137 IRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVRD----------LVSWTVMITAYEQAEKPEE---ALILFQKTQ 203 (680)
Q Consensus 137 ~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~~~----------~~~~~~li~~~~~~g~~~~---A~~~~~~m~ 203 (680)
++.. +..-+..|..+++.+++++|.+.+..+...| -..|..+-...+++-+.-. ...+++.+.
T Consensus 165 Lk~~----P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi 240 (835)
T KOG2047|consen 165 LKVA----PEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGI 240 (835)
T ss_pred HhcC----HHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhc
Confidence 8653 3335667778888999999998888776432 2345555554444433222 222333322
Q ss_pred HcCCCCCH--hHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHH-H---hcCCCCh
Q 037256 204 QEGLLSDS--VTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVF-D---MMEKRDL 277 (680)
Q Consensus 204 ~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f-~---~m~~~~~ 277 (680)
. .-+|. ..|.+|..-|.+.|.++.|..++++.+..- ..+.-++.+-+.|+....-.-+..+= . .-.+.+.
T Consensus 241 ~--rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~ 316 (835)
T KOG2047|consen 241 R--RFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDD 316 (835)
T ss_pred c--cCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhh
Confidence 2 12332 234555555555555555555555554432 12222333333333321111111000 0 0000011
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHhCC-----------CCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcC----
Q 037256 278 ISWNSMLTGYIQNGQASEALLLFDEMQNSD-----------CKPNPVTALILVSACTYLGSRQLGRKFHGYIINSN---- 342 (680)
Q Consensus 278 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----------~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~---- 342 (680)
.. ++-.+.-|+.+...+ -+-+..+|..-.. ...|+..+-...+.++++.-
T Consensus 317 ~d-------------l~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~k 381 (835)
T KOG2047|consen 317 VD-------------LELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKK 381 (835)
T ss_pred hh-------------HHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCccc
Confidence 11 122223333333221 0112222322222 23345556666666666531
Q ss_pred -CCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCC-CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHcC------
Q 037256 343 -MKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSE-RN----VSSWNVLIAGYGMHGHGRKALEFFSQMLEEG------ 410 (680)
Q Consensus 343 -~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g------ 410 (680)
.-.-...|..+.+.|-..|+++.|..+|++..... +. ...|-.-...=.++.+++.|+++.+.....-
T Consensus 382 a~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~ 461 (835)
T KOG2047|consen 382 AVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELE 461 (835)
T ss_pred CCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhh
Confidence 11224567888888999999999999998884432 22 2345555555567788888888887765421
Q ss_pred ----CCC-------CHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCC-CcChHHHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 037256 411 ----VKP-------DHITFTSILSACSHAGLIDEGRKCFADMTKLSV-KPEVKHYACMVDMLGRAGCLYEAFDMIKQM-P 477 (680)
Q Consensus 411 ----~~p-------~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 477 (680)
-.| +...|...+.--...|-++....+++++.+..+ .|.+..-- ...+-...-++++.+++++- +
T Consensus 462 ~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~Ny--AmfLEeh~yfeesFk~YErgI~ 539 (835)
T KOG2047|consen 462 YYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINY--AMFLEEHKYFEESFKAYERGIS 539 (835)
T ss_pred hhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHH--HHHHHhhHHHHHHHHHHHcCCc
Confidence 111 112344444545566788888889999888733 44433221 22345566788999999885 3
Q ss_pred C--CCCH-hHHHHHHHHHHHH--------HHHHHHHHHccCCCCC--chHHHHHHHHHhcCChhHHHHHHHHHHh
Q 037256 478 L--PPND-SVWGALLLACRIH--------GEIAANYLFQLEPEHT--GYFVLMSNIYAASNKWREVGKLREDMKN 539 (680)
Q Consensus 478 ~--~p~~-~~~~~ll~a~~~~--------~~~~~~~~~~l~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 539 (680)
+ -|+. ..|++.|.-+... ++..++++++..|... ..|.+.+.+--+-|.-..|.+++++...
T Consensus 540 LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 540 LFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred cCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 2 2444 4799988887666 6777888888877432 2344444455566888888888888643
No 68
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.09 E-value=2e-07 Score=88.97 Aligned_cols=404 Identities=13% Similarity=0.088 Sum_probs=202.3
Q ss_pred CChHHHHHHhhhccCCC----CCcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHH
Q 037256 56 GEPNTARSLFNSIHNDK----SYSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKV 131 (680)
Q Consensus 56 g~~~~A~~~f~~~~~~~----p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 131 (680)
.++..|+.+++--.... .++..| +...+.+.|++++|+..|.-+.+.. .|+...+..|.-...-.|.+.+|++
T Consensus 36 rDytGAislLefk~~~~~EEE~~~~lW--ia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~ 112 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNLDREEEDSLQLW--IAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKS 112 (557)
T ss_pred ccchhHHHHHHHhhccchhhhHHHHHH--HHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHH
Confidence 67777777766443321 022223 4455667788888888887776643 4455555555555555677777777
Q ss_pred HHHHHHHhCCCCchhHHHH-HHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCC
Q 037256 132 VHGDIIRTGFLSDSYVQAA-LVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSD 210 (680)
Q Consensus 132 ~~~~~~~~g~~~~~~~~~~-Li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 210 (680)
+-... |+....+. |...-.+.|+-++-...-+.+.+. ..---+|.+..-..-.+.+|+++|++.+.. .|+
T Consensus 113 ~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~e 183 (557)
T KOG3785|consen 113 IAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-LEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPE 183 (557)
T ss_pred HHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--Chh
Confidence 65432 33333333 334444556555544444443321 122223333333344577788888877765 345
Q ss_pred HhHHHHHHHHH-hccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHh--cCCHHHH--HHHHHhcCCCChhHHHHHHH
Q 037256 211 SVTIVSVASAV-GQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYAR--CGNVEKA--RLVFDMMEKRDLISWNSMLT 285 (680)
Q Consensus 211 ~~t~~~ll~~~-~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~--~g~~~~A--~~~f~~m~~~~~~~~~~li~ 285 (680)
-...+.-+..| .+..-++-+.+++.-.++. ++.+....|....-..+ .|+..++ .++-+.+.+. | ..+.
T Consensus 184 y~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~-~f~~ 257 (557)
T KOG3785|consen 184 YIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----Y-PFIE 257 (557)
T ss_pred hhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----c-hhHH
Confidence 55555544433 4555555566665554443 23334444443333333 2322221 1222222111 0 0111
Q ss_pred HHHHc-----CChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHH-----H
Q 037256 286 GYIQN-----GQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVM-----D 355 (680)
Q Consensus 286 ~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li-----~ 355 (680)
-.++. .+-+.|++++-.+.+. -|.. -..++--+.+.++.++|..+.+.+. ...|...+...++ .
T Consensus 258 ~l~rHNLVvFrngEgALqVLP~L~~~--IPEA--RlNL~iYyL~q~dVqeA~~L~Kdl~--PttP~EyilKgvv~aalGQ 331 (557)
T KOG3785|consen 258 YLCRHNLVVFRNGEGALQVLPSLMKH--IPEA--RLNLIIYYLNQNDVQEAISLCKDLD--PTTPYEYILKGVVFAALGQ 331 (557)
T ss_pred HHHHcCeEEEeCCccHHHhchHHHhh--ChHh--hhhheeeecccccHHHHHHHHhhcC--CCChHHHHHHHHHHHHhhh
Confidence 11111 1234455444433321 1211 1122223444455555444433221 0112222222221 1
Q ss_pred HHHHcCCHHHHHHHHhhcCCC--CC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 037256 356 MYAKCGDLDTAENMFNDIHPS--ER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLID 432 (680)
Q Consensus 356 ~y~k~g~~~~A~~~f~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 432 (680)
-......+.-|.+.|+-.-++ .- ++.--.+|.+.+.-..++++.+-.++....- +..|...-..+..+.+..|++.
T Consensus 332 e~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~ 410 (557)
T KOG3785|consen 332 ETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYV 410 (557)
T ss_pred hcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChH
Confidence 111122345566666655222 12 2333456666777777788888887777664 3333333335677888889999
Q ss_pred HHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhH
Q 037256 433 EGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSV 484 (680)
Q Consensus 433 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~ 484 (680)
+|.++|-......++-+..-...|.++|.++++++-|++++-++....+..+
T Consensus 411 eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fs 462 (557)
T KOG3785|consen 411 EAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFS 462 (557)
T ss_pred HHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHH
Confidence 9999887766544443443344566888899999999999888753334433
No 69
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.08 E-value=1.2e-06 Score=83.87 Aligned_cols=444 Identities=11% Similarity=0.073 Sum_probs=252.3
Q ss_pred HHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 037256 82 IRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQT 161 (680)
Q Consensus 82 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~ 161 (680)
+.-+..+.++..|+.+++--...+-.-...+-.-+...+...|++++|...+..+.... .++..++-.|.-.+.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 34455667888888887765543322222222233344557888888888888777644 56666776677666677888
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHcc
Q 037256 162 DDGCKVFDEMSVRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNA 241 (680)
Q Consensus 162 ~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 241 (680)
.+|..+-...+. ++..-..|...-.+.++-++-+.+-..+... ...-.++.+..-....+.+|.+++..++..+
T Consensus 108 ~eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn 181 (557)
T KOG3785|consen 108 IEAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN 181 (557)
T ss_pred HHHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 888887665542 2222233344444555555555544444321 1112223333333445677777777766543
Q ss_pred CCCChhHHH-HHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHH
Q 037256 242 FLEDLCIQN-SIVAMYARCGNVEKARLVFDMMEK--R-DLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALI 317 (680)
Q Consensus 242 ~~~~~~~~~-~Li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 317 (680)
|+-...| -+.-+|.|..-++-+.++++--.. | +++.-|.......+.=+..-|.+-.+.+.+.+-.. |--
T Consensus 182 --~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~~f 255 (557)
T KOG3785|consen 182 --PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----YPF 255 (557)
T ss_pred --hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----chh
Confidence 2222222 123356677766666666554332 2 34444444443333322233333333333322111 101
Q ss_pred HHHHHh----hhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHH-HH-
Q 037256 318 LVSACT----YLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAG-YG- 391 (680)
Q Consensus 318 ll~a~~----~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~-~~- 391 (680)
.-..|. -...-+.|.+++--+.+. -| ..--.|+--|.+.+++.+|..+..++.+..|-......+..+ +.
T Consensus 256 ~~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQ 331 (557)
T KOG3785|consen 256 IEYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQ 331 (557)
T ss_pred HHHHHHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhh
Confidence 111111 112234455554333321 12 222345566899999999999999985555543333322221 11
Q ss_pred ---hcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHH
Q 037256 392 ---MHGHGRKALEFFSQMLEEGVKPDHI-TFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLY 467 (680)
Q Consensus 392 ---~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 467 (680)
......-|.+.|+-.-+++..-|.+ ---++.+++.-..++++.+.+++....--..-|...+| +..+++..|.+.
T Consensus 332 e~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~ 410 (557)
T KOG3785|consen 332 ETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYV 410 (557)
T ss_pred hcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChH
Confidence 1122444555555544555444433 23345555566677889998888887654344555554 678999999999
Q ss_pred HHHHHHHhCC--CCCCHhHHHHHHHHHHHH---HHHHHHHHHccCCC-CC-chHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 037256 468 EAFDMIKQMP--LPPNDSVWGALLLACRIH---GEIAANYLFQLEPE-HT-GYFVLMSNIYAASNKWREVGKLREDMKNK 540 (680)
Q Consensus 468 ~A~~~~~~m~--~~p~~~~~~~ll~a~~~~---~~~~~~~~~~l~p~-~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 540 (680)
+|+++|-++. --.|..+|.+++.-|..+ -+.+.+.++..+.+ +. .....+++-|.+++.+=-|.+.|+.+...
T Consensus 411 eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l 490 (557)
T KOG3785|consen 411 EAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL 490 (557)
T ss_pred HHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc
Confidence 9999998873 224789999999999888 56677777776533 22 33456788899999999999999999875
Q ss_pred CCC
Q 037256 541 GLK 543 (680)
Q Consensus 541 g~~ 543 (680)
+..
T Consensus 491 DP~ 493 (557)
T KOG3785|consen 491 DPT 493 (557)
T ss_pred CCC
Confidence 543
No 70
>PRK12370 invasion protein regulator; Provisional
Probab=99.08 E-value=6.6e-08 Score=105.85 Aligned_cols=207 Identities=7% Similarity=-0.049 Sum_probs=113.6
Q ss_pred CHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHH
Q 037256 261 NVEKARLVFDMMEK---RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGY 337 (680)
Q Consensus 261 ~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~ 337 (680)
++++|...+++..+ .+...|..+...+...|++++|...|++..+.+ +.+...+..+..++...|++++|...++.
T Consensus 319 ~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 319 AMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 35666666666543 245556666666666666666666666666543 22344555555666666666666666666
Q ss_pred HHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCC-CC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 037256 338 IINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPS-ER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH 415 (680)
Q Consensus 338 ~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~-~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 415 (680)
+.+.... +...+..++..+...|++++|...+++.... .| +...+..+...|...|+.++|...+.++.. ..|+.
T Consensus 398 Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~--~~~~~ 474 (553)
T PRK12370 398 CLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST--QEITG 474 (553)
T ss_pred HHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh--ccchh
Confidence 6665422 2222223333455567777777777665322 23 344456666667777777777777776655 34554
Q ss_pred HHHH-HHHHHHHccCCHHHHHHHHHHhhhc-CCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256 416 ITFT-SILSACSHAGLIDEGRKCFADMTKL-SVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM 476 (680)
Q Consensus 416 ~t~~-~ll~a~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 476 (680)
.+.. .+...+...| +.+...++.+.+. .-.|.-..+..++ |.-.|+.+.+..+ +++
T Consensus 475 ~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~-~~~ 532 (553)
T PRK12370 475 LIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLV--LVAHGEAIAEKMW-NKF 532 (553)
T ss_pred HHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHH--HHHHhhhHHHHHH-HHh
Confidence 4333 3333445555 4666666665554 3233333333333 4445555555554 555
No 71
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.07 E-value=2.7e-08 Score=99.58 Aligned_cols=210 Identities=16% Similarity=0.083 Sum_probs=147.2
Q ss_pred chHHHHHHHHHHHHcC-CCC--chHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHH
Q 037256 327 SRQLGRKFHGYIINSN-MKI--DATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEF 402 (680)
Q Consensus 327 ~~~~a~~i~~~~~~~~-~~~--~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l 402 (680)
..+.+..-+..++... ..| ....+..+...|.+.|+.++|...|++.....| +...|+.+...|...|++++|...
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4455555555555422 222 245677788889999999999999998866655 477899999999999999999999
Q ss_pred HHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC--CCC
Q 037256 403 FSQMLEEGVKPDH-ITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM--PLP 479 (680)
Q Consensus 403 ~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~ 479 (680)
|++..+ +.|+. .++..+..++...|++++|.+.|+...+. .|+..........+...++.++|.+.+++. ...
T Consensus 121 ~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~ 196 (296)
T PRK11189 121 FDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLD 196 (296)
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCC
Confidence 999988 67765 47777778888899999999999998875 343322222222345677899999999654 233
Q ss_pred CCHhHHHHHHHHHHHH--HHHHHHHHH-------ccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 037256 480 PNDSVWGALLLACRIH--GEIAANYLF-------QLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKG 541 (680)
Q Consensus 480 p~~~~~~~ll~a~~~~--~~~~~~~~~-------~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 541 (680)
|+...|. +...+... ...+++.+. ++.|+.+..|..|+.+|...|++++|...+++..+.+
T Consensus 197 ~~~~~~~-~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 197 KEQWGWN-IVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred ccccHHH-HHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 4433332 21111111 122333333 4567777899999999999999999999999998754
No 72
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.07 E-value=2.5e-06 Score=88.81 Aligned_cols=354 Identities=16% Similarity=0.184 Sum_probs=197.3
Q ss_pred HHHHHHHhcCChHHHHHHHhcC--CCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCh
Q 037256 150 ALVDMYAKCGQTDDGCKVFDEM--SVRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDV 227 (680)
Q Consensus 150 ~Li~~~~~~g~~~~A~~~f~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 227 (680)
+-|..|.+.|....|.+.-..- ...|......+..++.+..-+++|=++|+++.. +.-.+..+-+...+
T Consensus 620 aaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d---------~dkale~fkkgdaf 690 (1636)
T KOG3616|consen 620 AAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHD---------FDKALECFKKGDAF 690 (1636)
T ss_pred HHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHcccHH
Confidence 3466777777776666553221 123444444455555555555666666655432 11122222222223
Q ss_pred HHHHHHHHHHHHccCCCChhH-HHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 037256 228 LKAQAVHGYAICNAFLEDLCI-QNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNS 306 (680)
Q Consensus 228 ~~a~~~~~~~~~~g~~~~~~~-~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 306 (680)
.+|.++-... ++..++. -.....-+...|+++.|..-|-+... .---|.+-.....|.+|+.+++.++..
T Consensus 691 ~kaielarfa----fp~evv~lee~wg~hl~~~~q~daainhfiea~~-----~~kaieaai~akew~kai~ildniqdq 761 (1636)
T KOG3616|consen 691 GKAIELARFA----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC-----LIKAIEAAIGAKEWKKAISILDNIQDQ 761 (1636)
T ss_pred HHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh-----HHHHHHHHhhhhhhhhhHhHHHHhhhh
Confidence 3333332221 1222111 12233344455666666665544321 112344556677888888888877764
Q ss_pred CCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHH
Q 037256 307 DCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVL 386 (680)
Q Consensus 307 g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~l 386 (680)
. .-.--|..+..-|+..|+++.|.++|-.. ..++--|+||.+.|++++|.++-.+...++.....|-+-
T Consensus 762 k--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiak 830 (1636)
T KOG3616|consen 762 K--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAK 830 (1636)
T ss_pred c--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHh
Confidence 3 22334666777888888888888887543 234566788888888888888888775445555666665
Q ss_pred HHHHHhcCChHHHHHHHH-------------------HHHHc--CCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHhhh
Q 037256 387 IAGYGMHGHGRKALEFFS-------------------QMLEE--GVKPDH--ITFTSILSACSHAGLIDEGRKCFADMTK 443 (680)
Q Consensus 387 i~~~~~~g~~~~A~~l~~-------------------~m~~~--g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 443 (680)
..-+-.+|++.+|.++|- .|++. ...|+. .|-..+..-+...|++..|.+.|-+..
T Consensus 831 aedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~- 909 (1636)
T KOG3616|consen 831 AEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG- 909 (1636)
T ss_pred HHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh-
Confidence 555566666666655441 11110 123333 255556666777788888877775543
Q ss_pred cCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCC----CCCHhHHHHHHHHH------HHHH--H---------HHHHH
Q 037256 444 LSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPL----PPNDSVWGALLLAC------RIHG--E---------IAANY 502 (680)
Q Consensus 444 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~p~~~~~~~ll~a~------~~~~--~---------~~~~~ 502 (680)
-|.+-+.+|-..+.+++|.++-+.-+- +.-...|.--|++- -+|| + -+++-
T Consensus 910 --------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~ 981 (1636)
T KOG3616|consen 910 --------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDF 981 (1636)
T ss_pred --------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhh
Confidence 356677888888888888888765521 11122343322221 1111 0 01122
Q ss_pred HHc-----cCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 037256 503 LFQ-----LEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKG 541 (680)
Q Consensus 503 ~~~-----l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 541 (680)
+++ .....+..+..++--+...|++++|.+-+-+..+.+
T Consensus 982 afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 982 AFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred HHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 222 233446778888888999999999988887776643
No 73
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.02 E-value=6.7e-06 Score=86.81 Aligned_cols=396 Identities=13% Similarity=0.093 Sum_probs=245.4
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhH-HH
Q 037256 140 GFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSV---RDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVT-IV 215 (680)
Q Consensus 140 g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~ 215 (680)
.+.-|..+|..|.-+...+|+++.+-+.|++... .....|+.+...|...|.-..|+.+++.-....-.|+..+ +.
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 4567889999999999999999999999998753 3456899999999999999999999987765443354443 43
Q ss_pred HHHHHHh-ccCChHHHHHHHHHHHHc--cC--CCChhHHHHHHHHHHhcC-----------CHHHHHHHHHhcCC---CC
Q 037256 216 SVASAVG-QLGDVLKAQAVHGYAICN--AF--LEDLCIQNSIVAMYARCG-----------NVEKARLVFDMMEK---RD 276 (680)
Q Consensus 216 ~ll~~~~-~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~Li~~y~~~g-----------~~~~A~~~f~~m~~---~~ 276 (680)
..-+.|. +.+..+++..+-.+++.. +. ......+-.+.-+|...- ...++...+++..+ .|
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3344444 457788888777777662 11 122334444444444321 12345556666533 23
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHc-CCCCchHHHHHHHH
Q 037256 277 LISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINS-NMKIDATLRNAVMD 355 (680)
Q Consensus 277 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~-~~~~~~~~~~~li~ 355 (680)
+...--+---|+-.++.+.|++..++..+.+-.-+...|..+.-.++..+++..|..+.+..... |. |-.....-+.
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~~~~~~ 555 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLMDGKIH 555 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhchhhhh
Confidence 33322333446677889999999999888765677777877777788888888888887766542 21 0000000111
Q ss_pred HHHHcCCHHHHHHH--------------------------HhhcC---CCCCC-HhHHHHHHHHHHhcCChHHHHHHHHH
Q 037256 356 MYAKCGDLDTAENM--------------------------FNDIH---PSERN-VSSWNVLIAGYGMHGHGRKALEFFSQ 405 (680)
Q Consensus 356 ~y~k~g~~~~A~~~--------------------------f~~~~---~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~ 405 (680)
.-..-++.++|... +..+. +...+ +.++..+..-.. -+.+.+..-..
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a--~~~~~~~se~~- 632 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVA--SQLKSAGSELK- 632 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHH--hhhhhcccccc-
Confidence 11122333333222 22110 00111 112222211111 11111100000
Q ss_pred HHHcCCCCCH--------HHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-
Q 037256 406 MLEEGVKPDH--------ITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM- 476 (680)
Q Consensus 406 m~~~g~~p~~--------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m- 476 (680)
|...-+.|.. ..|......+...+..++|...+.+..+.. +.....|......+...|.++||.+.|...
T Consensus 633 Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al 711 (799)
T KOG4162|consen 633 LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVAL 711 (799)
T ss_pred cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Confidence 2211122322 134455567788899999998888877642 445666777778888999999999988775
Q ss_pred CCCCCHhHHHHHHHHHHHH------HHH--HHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 037256 477 PLPPNDSVWGALLLACRIH------GEI--AANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKG 541 (680)
Q Consensus 477 ~~~p~~~~~~~ll~a~~~~------~~~--~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 541 (680)
-+.|+.+--.+-++.+... +.. ....+++++|.|+..+..|+.++-+.|+.++|.+-|.....-.
T Consensus 712 ~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 712 ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 6788766544444444333 333 6678889999999999999999999999999999999887643
No 74
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.99 E-value=2.5e-07 Score=96.76 Aligned_cols=95 Identities=12% Similarity=0.135 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc----C--CCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhc----C--CCc
Q 037256 382 SWNVLIAGYGMHGHGRKALEFFSQMLEE----G--VKPD-HITFTSILSACSHAGLIDEGRKCFADMTKL----S--VKP 448 (680)
Q Consensus 382 ~~~~li~~~~~~g~~~~A~~l~~~m~~~----g--~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~----~--~~p 448 (680)
+++.|...|.+.|++++|.+++++.+.. + ..+. ...++.+..+|.+.+.+++|.++|.+...- | .+-
T Consensus 369 ~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~ 448 (508)
T KOG1840|consen 369 IYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPD 448 (508)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCc
Confidence 5666666666667777666666665532 1 1222 235566666666666666666666553321 1 122
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256 449 EVKHYACMVDMLGRAGCLYEAFDMIKQM 476 (680)
Q Consensus 449 ~~~~~~~li~~~~~~g~~~~A~~~~~~m 476 (680)
...+|..|...|.+.|++++|.++.+..
T Consensus 449 ~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 449 VTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 2456667777777777777777666554
No 75
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.97 E-value=4.4e-07 Score=94.91 Aligned_cols=225 Identities=17% Similarity=0.210 Sum_probs=110.5
Q ss_pred hHHHHHHHHhhhcchHHHHHHHHHHHHc-----CC-CCch-HHHHHHHHHHHHcCCHHHHHHHHhhcCCC-----CC---
Q 037256 314 TALILVSACTYLGSRQLGRKFHGYIINS-----NM-KIDA-TLRNAVMDMYAKCGDLDTAENMFNDIHPS-----ER--- 378 (680)
Q Consensus 314 t~~~ll~a~~~~g~~~~a~~i~~~~~~~-----~~-~~~~-~~~~~li~~y~k~g~~~~A~~~f~~~~~~-----~~--- 378 (680)
|+..+...|...|+++.|...++..++. |. .|.+ ...+.+...|...+++++|..+|+++... .+
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3444445555555555555555544432 10 1111 12223445555556665555555554211 11
Q ss_pred C-HhHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCC-CHH-HHHHHHHHHHccCCHHHHHHHHHHhhhc---CCC
Q 037256 379 N-VSSWNVLIAGYGMHGHGRKALEFFSQMLE-----EGVKP-DHI-TFTSILSACSHAGLIDEGRKCFADMTKL---SVK 447 (680)
Q Consensus 379 ~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p-~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~~~ 447 (680)
. ..+++.|...|.+.|++++|...+++..+ .|..+ ... -++.+...|...+.+++|..+++...+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 1 23445555556666666655555554432 11111 111 3444444555666666666655554432 111
Q ss_pred cC----hHHHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCC-HhHHHHHHHHHHHH-----HHHHHH----HHH
Q 037256 448 PE----VKHYACMVDMLGRAGCLYEAFDMIKQM---------PLPPN-DSVWGALLLACRIH-----GEIAAN----YLF 504 (680)
Q Consensus 448 p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~ll~a~~~~-----~~~~~~----~~~ 504 (680)
++ ..+++.|...|...|++++|++++++. +..+. ....+-|-.+|... +...+. .+.
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 11 245556666666666666666665554 00111 12233333344222 111111 122
Q ss_pred ccCCCC---CchHHHHHHHHHhcCChhHHHHHHHHHH
Q 037256 505 QLEPEH---TGYFVLMSNIYAASNKWREVGKLREDMK 538 (680)
Q Consensus 505 ~l~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 538 (680)
...|+. ..+|..|+.+|...|++++|.++.+...
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 234444 4568889999999999999999999876
No 76
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.97 E-value=3.7e-08 Score=92.94 Aligned_cols=229 Identities=16% Similarity=0.143 Sum_probs=172.3
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHc
Q 037256 281 NSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKC 360 (680)
Q Consensus 281 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~ 360 (680)
+-|..+|.+.|.+.+|.+.|+.-.+. .|-..||..+-.+|.+...++.|..++..-++.- +.|+....-+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHH
Confidence 56778888888888888888887765 5666677777788888888888888887776542 55666666677778888
Q ss_pred CCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 037256 361 GDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFA 439 (680)
Q Consensus 361 g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 439 (680)
++.++|.++++...+..| |+.+...+..+|.-.++++-|+..++++.+.|+. +...|+.+.-+|...+++|-++.-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 888899999888865544 5667777777888889999999999999988865 55667777778888888888888888
Q ss_pred HhhhcCCCcC--hHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHHHHHHHHHHccCCCCCchHHHH
Q 037256 440 DMTKLSVKPE--VKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEIAANYLFQLEPEHTGYFVLM 517 (680)
Q Consensus 440 ~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~~~~~~l~p~~~~~~~~l 517 (680)
+....--.|+ ..+|-.+.......|++.-|.+. ++..+.-+|++.+.++.|
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rc---------------------------frlaL~~d~~h~ealnNL 435 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRC---------------------------FRLALTSDAQHGEALNNL 435 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHH---------------------------HHHHhccCcchHHHHHhH
Confidence 7766532233 33454454444555555544444 444556688999999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC
Q 037256 518 SNIYAASNKWREVGKLREDMKNK 540 (680)
Q Consensus 518 ~~~~~~~g~~~~A~~~~~~m~~~ 540 (680)
+-+-.+.|+.++|..++....+.
T Consensus 436 avL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 436 AVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhhcCchHHHHHHHHHhhhh
Confidence 99999999999999999988764
No 77
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.92 E-value=2.8e-06 Score=89.61 Aligned_cols=423 Identities=13% Similarity=0.084 Sum_probs=227.4
Q ss_pred hhhhHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCC-CCCcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcc-
Q 037256 34 TSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHND-KSYSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSY- 111 (680)
Q Consensus 34 ~~~~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~- 111 (680)
|..+|..|.=+... | |+++.+.+.|++...- --....|+.+-..++..|.-..|+.+++.-......|+..
T Consensus 322 d~ai~d~Lt~al~~-~------g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s 394 (799)
T KOG4162|consen 322 DAAIFDHLTFALSR-C------GQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDIS 394 (799)
T ss_pred hHHHHHHHHHHHHH-H------HHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcch
Confidence 88889888888888 9 9999999999876543 1134579999999999999889999988765543335433
Q ss_pred cHHHHHHHHh-ccCChHHHHHHHHHHHHhC--C--CCchhHHHHHHHHHHhc-----------CChHHHHHHHhcCCCC-
Q 037256 112 TFPFVLKACA-SNSLILEGKVVHGDIIRTG--F--LSDSYVQAALVDMYAKC-----------GQTDDGCKVFDEMSVR- 174 (680)
Q Consensus 112 t~~~ll~~~~-~~~~~~~a~~~~~~~~~~g--~--~~~~~~~~~Li~~~~~~-----------g~~~~A~~~f~~~~~~- 174 (680)
.+-..-+.|. +.+.++++...-..++... . ...+..+-.+.-+|... ....++.+.+++..+.
T Consensus 395 ~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d 474 (799)
T KOG4162|consen 395 VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD 474 (799)
T ss_pred HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC
Confidence 3333334454 4466777777666666521 1 11223333333333321 1122333344433211
Q ss_pred --ChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHH
Q 037256 175 --DLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSI 252 (680)
Q Consensus 175 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~L 252 (680)
|..+--.+.--|+..++.+.|++..++..+.+-.-+...|..+...++..+++.+|+.+.+.....- +.|......-
T Consensus 475 ~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~ 553 (799)
T KOG4162|consen 475 PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGK 553 (799)
T ss_pred CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhh
Confidence 1111111222234445555555555555554444444555555555555555555555544443210 0000000001
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC--CHhhHHHHHHHHhhhcc-hH
Q 037256 253 VAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKP--NPVTALILVSACTYLGS-RQ 329 (680)
Q Consensus 253 i~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~a~~~~g~-~~ 329 (680)
+..-.+.++.++|......+.. .|... .+..+.++-...+++...+.-.--.| ...|+..+..-....+. ..
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L~----~we~~-~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~ 628 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKLA----LWEAE-YGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAG 628 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHHH----HHHhh-hhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcc
Confidence 1111122333333322221110 00000 00111122222222222221110011 11222222221111100 00
Q ss_pred HHHHHHHHHHHcCCCCc--------hHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHH
Q 037256 330 LGRKFHGYIINSNMKID--------ATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKAL 400 (680)
Q Consensus 330 ~a~~i~~~~~~~~~~~~--------~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~ 400 (680)
-... +.+....|. ...|....+.+.+.+..++|...+.+.....| ....|+.....+...|+.++|.
T Consensus 629 se~~----Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~ 704 (799)
T KOG4162|consen 629 SELK----LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAK 704 (799)
T ss_pred cccc----cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHH
Confidence 0000 111111111 34566677888888999999877777644433 3556777777788889999999
Q ss_pred HHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHH--HHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256 401 EFFSQMLEEGVKPDHI-TFTSILSACSHAGLIDEGRK--CFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM 476 (680)
Q Consensus 401 ~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~--~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 476 (680)
+.|..... +.|+.+ ..+++...+...|+..-+.. ++..+.+.+ +.+...|-.+...+-+.|+.++|.+.|+..
T Consensus 705 ~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 705 EAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 99998888 889886 78888888999998777776 888888876 667888999999999999999998888764
No 78
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=2.8e-05 Score=79.79 Aligned_cols=43 Identities=19% Similarity=0.044 Sum_probs=22.7
Q ss_pred CChHHHHHHhhhccCCCC-CcchHHHHHHHHHhCCCchHHHHHH
Q 037256 56 GEPNTARSLFNSIHNDKS-YSFLWNTMIRAYANNGHCVETLELY 98 (680)
Q Consensus 56 g~~~~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~ 98 (680)
|++++|.+..+.+....| |...+..=+-++.+.+.+++|+.+.
T Consensus 26 ~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~i 69 (652)
T KOG2376|consen 26 GEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLI 69 (652)
T ss_pred hHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHH
Confidence 556666665555555544 3334444445555555566555443
No 79
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.88 E-value=1.1e-07 Score=89.74 Aligned_cols=233 Identities=13% Similarity=0.118 Sum_probs=191.2
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhH-HHHHHH
Q 037256 245 DLCIQNSIVAMYARCGNVEKARLVFDMMEK--RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTA-LILVSA 321 (680)
Q Consensus 245 ~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~ll~a 321 (680)
|-.--+-+..+|.+.|-+.+|++.|+...+ +-+.+|-.|-..|.+..+++.|+.+|.+-.+. .|-.+|+ ......
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARI 299 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHH
Confidence 334447788999999999999999988754 67788989999999999999999999988875 5655655 456677
Q ss_pred HhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCC-CCCHhHHHHHHHHHHhcCChHHHH
Q 037256 322 CTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPS-ERNVSSWNVLIAGYGMHGHGRKAL 400 (680)
Q Consensus 322 ~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~ 400 (680)
+...+..+.+.++++...+.. +.++....++...|.-.++.+.|...++++... -.+...|+.+.-+|.-.++++-++
T Consensus 300 ~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhH
Confidence 888899999999999998875 556666667777888889999999999998544 467888999999999999999999
Q ss_pred HHHHHHHHcCCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 037256 401 EFFSQMLEEGVKPDHI--TFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM-P 477 (680)
Q Consensus 401 ~l~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 477 (680)
.-|.+.+..--.|+.. .|-.+-......|++..|.+.|+-....+ .-+.+.++.|.-.-.|.|++++|..+++.. .
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 9999998876667764 56666666778899999999999887754 456778888888889999999999999877 3
Q ss_pred CCCC
Q 037256 478 LPPN 481 (680)
Q Consensus 478 ~~p~ 481 (680)
..|+
T Consensus 458 ~~P~ 461 (478)
T KOG1129|consen 458 VMPD 461 (478)
T ss_pred hCcc
Confidence 4454
No 80
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.83 E-value=9.8e-06 Score=86.01 Aligned_cols=141 Identities=17% Similarity=0.158 Sum_probs=101.5
Q ss_pred CCHhHH--HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHH
Q 037256 378 RNVSSW--NVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHI-TFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYA 454 (680)
Q Consensus 378 ~~~~~~--~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 454 (680)
|....| .-+...|-..|++++|++++++.++ ..|..+ .|..-...+-+.|++++|.+.++...... .-|...-+
T Consensus 190 p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~--htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNs 266 (517)
T PF12569_consen 190 PSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE--HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINS 266 (517)
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHH
Confidence 444445 5567778899999999999999999 678865 78888889999999999999999999875 45667777
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHH
Q 037256 455 CMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLR 534 (680)
Q Consensus 455 ~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 534 (680)
-.+..+.|+|++++|.+++..... ++......|...-+ .-...--+.+|.+.|++..|.+.+
T Consensus 267 K~aKy~LRa~~~e~A~~~~~~Ftr-~~~~~~~~L~~mQc-----------------~Wf~~e~a~a~~r~~~~~~ALk~~ 328 (517)
T PF12569_consen 267 KCAKYLLRAGRIEEAEKTASLFTR-EDVDPLSNLNDMQC-----------------MWFETECAEAYLRQGDYGLALKRF 328 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhcC-CCCCcccCHHHHHH-----------------HHHHHHHHHHHHHHhhHHHHHHHH
Confidence 788889999999999999887632 22111111110000 112334567778888888887777
Q ss_pred HHHHh
Q 037256 535 EDMKN 539 (680)
Q Consensus 535 ~~m~~ 539 (680)
..+.+
T Consensus 329 ~~v~k 333 (517)
T PF12569_consen 329 HAVLK 333 (517)
T ss_pred HHHHH
Confidence 66643
No 81
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.82 E-value=4.1e-06 Score=88.88 Aligned_cols=284 Identities=11% Similarity=0.027 Sum_probs=172.1
Q ss_pred HHHHhcCChHHHHHHHhcCCC--CChhH-HHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHh-cc----
Q 037256 153 DMYAKCGQTDDGCKVFDEMSV--RDLVS-WTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVG-QL---- 224 (680)
Q Consensus 153 ~~~~~~g~~~~A~~~f~~~~~--~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-~~---- 224 (680)
..+...|++++|++.+++-.. .|..+ .......+.+.|+.++|..+|+.+++.+ |+...|...+..+. ..
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccc
Confidence 445677888888888766543 24443 3556677777788888888888887764 56666555444443 11
Q ss_pred -CChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCh-hHHHHHHHH
Q 037256 225 -GDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQA-SEALLLFDE 302 (680)
Q Consensus 225 -~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~ 302 (680)
.+.+.-.++++.+...- |. ..+...+.-.+.....+ ..+...+..
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~-------------------------------s~~~~rl~L~~~~g~~F~~~~~~yl~~ 136 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PR-------------------------------SDAPRRLPLDFLEGDEFKERLDEYLRP 136 (517)
T ss_pred cccHHHHHHHHHHHHHhC--cc-------------------------------ccchhHhhcccCCHHHHHHHHHHHHHH
Confidence 12233333333332221 10 00000011111111112 233445556
Q ss_pred HHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHc--------------CCCCchH--HHHHHHHHHHHcCCHHHH
Q 037256 303 MQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINS--------------NMKIDAT--LRNAVMDMYAKCGDLDTA 366 (680)
Q Consensus 303 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~--------------~~~~~~~--~~~~li~~y~k~g~~~~A 366 (680)
+...|+++ +|+.+-..|......+...+++...... .-+|... ++.-+...|-..|++++|
T Consensus 137 ~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~A 213 (517)
T PF12569_consen 137 QLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKA 213 (517)
T ss_pred HHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHH
Confidence 66667554 3334444444444444444444433321 1134443 445667888899999999
Q ss_pred HHHHhhcCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhc
Q 037256 367 ENMFNDIHPSERN-VSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPD-HITFTSILSACSHAGLIDEGRKCFADMTKL 444 (680)
Q Consensus 367 ~~~f~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 444 (680)
.+..++.....|+ +..|..-...|-+.|++.+|.+.++.... +.+. ...-+-....+.+.|++++|.+++....+.
T Consensus 214 l~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~--LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~ 291 (517)
T PF12569_consen 214 LEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARE--LDLADRYINSKCAKYLLRAGRIEEAEKTASLFTRE 291 (517)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--CChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCC
Confidence 9999998777776 66788888899999999999999999988 4444 445555666788999999999999988877
Q ss_pred CCCcChHHH--------HHHHHHHHhcCCHHHHHHHHHhC
Q 037256 445 SVKPEVKHY--------ACMVDMLGRAGCLYEAFDMIKQM 476 (680)
Q Consensus 445 ~~~p~~~~~--------~~li~~~~~~g~~~~A~~~~~~m 476 (680)
+..|....+ .--..+|.|.|++..|++.|..+
T Consensus 292 ~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 292 DVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred CCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 544433222 33457899999999998877655
No 82
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.82 E-value=4.4e-06 Score=88.21 Aligned_cols=385 Identities=14% Similarity=0.107 Sum_probs=232.0
Q ss_pred hhhhHHHHHH--hhhhhhhcccCCCChHHHHHHhhhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHhC-C-----
Q 037256 34 TSGLINQALH--LGAKIIIKYTTYGEPNTARSLFNSIHNDKSYSFLWNTMIRAYANNGHCVETLELYSTMRRS-G----- 105 (680)
Q Consensus 34 ~~~~~~~li~--~y~~~~~~~~~~g~~~~A~~~f~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g----- 105 (680)
|..+-.++++ +|.- . |+.+.|.+..+.+... +.|..|.+.|.+.++.+-|.-.+-.|... |
T Consensus 725 d~~TRkaml~FSfyvt-i------G~MD~AfksI~~IkS~----~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR 793 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVT-I------GSMDAAFKSIQFIKSD----SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALR 793 (1416)
T ss_pred CHHHHHhhhceeEEEE-e------ccHHHHHHHHHHHhhh----HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHH
Confidence 6666677765 4555 5 9999998888777654 57999999999999888877776666321 1
Q ss_pred ---CCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC-ChhHHHH
Q 037256 106 ---ISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVR-DLVSWTV 181 (680)
Q Consensus 106 ---~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~ 181 (680)
-.|+ .+=..+.-.....|.+++|+.++.+..+.+ .|=..|...|.+++|.++-+.-..- =..+|..
T Consensus 794 ~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~ 863 (1416)
T KOG3617|consen 794 RAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYN 863 (1416)
T ss_pred HHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHH
Confidence 1222 222333333467899999999999887754 2445677889999999886543221 1235655
Q ss_pred HHHHHHhCCCccHHHHHHHHHH----------HcC---------CCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccC
Q 037256 182 MITAYEQAEKPEEALILFQKTQ----------QEG---------LLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAF 242 (680)
Q Consensus 182 li~~~~~~g~~~~A~~~~~~m~----------~~g---------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 242 (680)
-...+-..++.+.|++.|++.. ... -.-|...|.......-..|+.+.|..++..+..
T Consensus 864 yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--- 940 (1416)
T KOG3617|consen 864 YAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD--- 940 (1416)
T ss_pred HHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---
Confidence 6666666777888888776532 111 012333444444455566777777776665443
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 037256 243 LEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSAC 322 (680)
Q Consensus 243 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 322 (680)
|-+++...+-.|+.++|-++-++- .|......+.+.|-..|++.+|..+|.+.+ +|...|+.|
T Consensus 941 ------~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlc 1003 (1416)
T KOG3617|consen 941 ------YFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLC 1003 (1416)
T ss_pred ------hhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHH
Confidence 345666666677777777776643 456667778889999999999999998765 344444444
Q ss_pred hhhcc---------------hHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhc------------CC
Q 037256 323 TYLGS---------------RQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDI------------HP 375 (680)
Q Consensus 323 ~~~g~---------------~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~------------~~ 375 (680)
-..+- .-.|..+|++ .|.. ..--+..|-|.|.+.+|+++--+- ..
T Consensus 1004 KEnd~~d~L~nlal~s~~~d~v~aArYyEe---~g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd 1075 (1416)
T KOG3617|consen 1004 KENDMKDRLANLALMSGGSDLVSAARYYEE---LGGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLD 1075 (1416)
T ss_pred HhcCHHHHHHHHHhhcCchhHHHHHHHHHH---cchh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcC
Confidence 33222 2222223322 2211 122345688888888887652211 12
Q ss_pred CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhc-CCCcCh----
Q 037256 376 SERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKL-SVKPEV---- 450 (680)
Q Consensus 376 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~p~~---- 450 (680)
...|+...+.-..-|+.+.++++|..++-...+ |...+..|...| +.-..++-+.|.-. .-.|+.
T Consensus 1076 ~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~~n-v~vtee~aE~mTp~Kd~~~~e~~R~ 1145 (1416)
T KOG3617|consen 1076 AGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQLCKNRN-VRVTEEFAELMTPTKDDMPNEQERK 1145 (1416)
T ss_pred CCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhcCC-CchhHHHHHhcCcCcCCCccHHHHH
Confidence 244666677777778888888888888766554 344444444433 22222222223211 112322
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 037256 451 KHYACMVDMLGRAGCLYEAFDMIKQMP 477 (680)
Q Consensus 451 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 477 (680)
.....+.+.+.+.|.+..|-+-|.+.+
T Consensus 1146 ~vLeqvae~c~qQG~Yh~AtKKfTQAG 1172 (1416)
T KOG3617|consen 1146 QVLEQVAELCLQQGAYHAATKKFTQAG 1172 (1416)
T ss_pred HHHHHHHHHHHhccchHHHHHHHhhhh
Confidence 234455566666666666666555553
No 83
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=3e-05 Score=76.11 Aligned_cols=263 Identities=10% Similarity=-0.027 Sum_probs=123.5
Q ss_pred ChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhH-HHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHH
Q 037256 175 DLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVT-IVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIV 253 (680)
Q Consensus 175 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li 253 (680)
|+.....+...+...|+.++|+..|++.+-. .|+..+ ...-.-.+...|+.+....+...+....- ....-|-.-.
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV~~ 307 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK-YTASHWFVHA 307 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh-cchhhhhhhh
Confidence 4455555555555555555555555554432 122211 00011112334444444444333332210 0001111111
Q ss_pred HHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHH
Q 037256 254 AMYARCGNVEKARLVFDMMEKR---DLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQL 330 (680)
Q Consensus 254 ~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 330 (680)
......++++.|..+-++..+. ++..+-.-...+.+.|+.++|.-.|+..+... +-+...|..++..|...|.+.+
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHH
Confidence 1222334455555555544432 22223222334555555666655555554421 2244455556666555555555
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHH-HHHH-HcCCHHHHHHHHhhcCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 037256 331 GRKFHGYIINSNMKIDATLRNAVM-DMYA-KCGDLDTAENMFNDIHPSERN-VSSWNVLIAGYGMHGHGRKALEFFSQML 407 (680)
Q Consensus 331 a~~i~~~~~~~~~~~~~~~~~~li-~~y~-k~g~~~~A~~~f~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~ 407 (680)
|...-....+. ++.+..+.+.+. +.+. ...--++|.+++++.....|+ ....+.+...+...|..+.++.++++-.
T Consensus 387 A~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L 465 (564)
T KOG1174|consen 387 ANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHL 465 (564)
T ss_pred HHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHH
Confidence 55444443332 122223322221 1111 112235666666666555555 3345555556666666666666666666
Q ss_pred HcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhc
Q 037256 408 EEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKL 444 (680)
Q Consensus 408 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 444 (680)
. ..||....+.|...+...+.+++|.+.|....+.
T Consensus 466 ~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 466 I--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred h--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 6 5666666666666666666667776666666543
No 84
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.79 E-value=2.1e-06 Score=77.79 Aligned_cols=191 Identities=15% Similarity=0.128 Sum_probs=145.6
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHc
Q 037256 281 NSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKC 360 (680)
Q Consensus 281 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~ 360 (680)
.-|.-+|.+.|+...|..-+++.++.. +-+..++..+...|...|..+.|.+.|+..++.. +.+..+.|.....+|..
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhC
Confidence 345556777777777777777777653 3344566666667777777777777777776655 45677888889999999
Q ss_pred CCHHHHHHHHhhcCCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHH
Q 037256 361 GDLDTAENMFNDIHPS---ERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH-ITFTSILSACSHAGLIDEGRK 436 (680)
Q Consensus 361 g~~~~A~~~f~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~ 436 (680)
|++++|...|++.... ..-..+|..+.-+..+.|+.+.|.+.|++..+ ..|+. .+...+.......|++-.|..
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCCChHHHHHHHHHHhcccchHHHH
Confidence 9999999999987332 12356788888888899999999999999998 56665 478888888899999999999
Q ss_pred HHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256 437 CFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM 476 (680)
Q Consensus 437 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 476 (680)
+++.....+ .++.......|..--+.|+-+.|.++=..+
T Consensus 195 ~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 195 YLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred HHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 999888775 388888888888888888888776654444
No 85
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.77 E-value=4.4e-05 Score=79.30 Aligned_cols=231 Identities=12% Similarity=0.072 Sum_probs=123.2
Q ss_pred hccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCccHHHH
Q 037256 121 ASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSV---RDLVSWTVMITAYEQAEKPEEALI 197 (680)
Q Consensus 121 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 197 (680)
...+++..+....+.+++ +++....+.....-.+...|+-++|......-.. ++.+.|..+.-.+-...++++|++
T Consensus 18 yE~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 18 YETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHH
Confidence 345667777777777776 3344444444333344566788888777665543 355678888888888889999999
Q ss_pred HHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh
Q 037256 198 LFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDL 277 (680)
Q Consensus 198 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~ 277 (680)
.|+.....+ +-|...+-.+.-.-++.++++..........+. ....-
T Consensus 97 cy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--------------------------------~~~~r 143 (700)
T KOG1156|consen 97 CYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--------------------------------RPSQR 143 (700)
T ss_pred HHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--------------------------------hhhhH
Confidence 998887653 223333333322223333333333222222221 11233
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCCHhhHHHHHH------HHhhhcchHHHHHHHHHHHHcCCCCchHHH
Q 037256 278 ISWNSMLTGYIQNGQASEALLLFDEMQNSD-CKPNPVTALILVS------ACTYLGSRQLGRKFHGYIINSNMKIDATLR 350 (680)
Q Consensus 278 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~------a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~ 350 (680)
..|.....++.-.|+...|..++++..+.. -.|+...+..... .....|.++.+.+........ +......-
T Consensus 144 a~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~ 222 (700)
T KOG1156|consen 144 ASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFE 222 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHh
Confidence 456666666666666666666666665443 2344443332221 223444555554444332211 11122222
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHH
Q 037256 351 NAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVL 386 (680)
Q Consensus 351 ~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~l 386 (680)
..-.+.+.+.+++++|..++..+....||..-|+-.
T Consensus 223 e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~ 258 (700)
T KOG1156|consen 223 ETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEG 258 (700)
T ss_pred hhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHH
Confidence 334456667777777777777775556665554443
No 86
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.76 E-value=3.4e-05 Score=83.66 Aligned_cols=180 Identities=11% Similarity=0.013 Sum_probs=88.8
Q ss_pred CChHHHHHHhhhccCCCCC-cchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHH
Q 037256 56 GEPNTARSLFNSIHNDKSY-SFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHG 134 (680)
Q Consensus 56 g~~~~A~~~f~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 134 (680)
.+...|...|-+..+..|+ ...|..|...|...-+...|...|++..+... .+..........+++..+++.|..+.-
T Consensus 472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 4455666666555555332 33566666666655566666666666655432 244555556666666666666665511
Q ss_pred HHHHhC-CCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCC
Q 037256 135 DIIRTG-FLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSV---RDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSD 210 (680)
Q Consensus 135 ~~~~~g-~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 210 (680)
..-+.. ...-..-|..+.-.|.+.++...|..-|+.... .|...|..+..+|...|++..|+++|.+.... .|+
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~ 628 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPL 628 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcH
Confidence 111100 000111222233334555666666665554432 24555666666666666666666666555442 232
Q ss_pred HhHHHHHH--HHHhccCChHHHHHHHHHHHH
Q 037256 211 SVTIVSVA--SAVGQLGDVLKAQAVHGYAIC 239 (680)
Q Consensus 211 ~~t~~~ll--~~~~~~~~~~~a~~~~~~~~~ 239 (680)
. +|.... -.-+..|.+.++...++.++.
T Consensus 629 s-~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 629 S-KYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred h-HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 2 121111 122344555565555555443
No 87
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=2.1e-05 Score=79.97 Aligned_cols=425 Identities=14% Similarity=0.051 Sum_probs=210.3
Q ss_pred CCCChHHHHHHhhhccCCCC-CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCC-cccHHHHHHHHhccCChHHHHH
Q 037256 54 TYGEPNTARSLFNSIHNDKS-YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSN-SYTFPFVLKACASNSLILEGKV 131 (680)
Q Consensus 54 ~~g~~~~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~ 131 (680)
+.|+++.|...|-+.....| |.+.|..-..+|+..|++++|++=-.+-++. .|+ ...|+-.-.+..-.|++++|..
T Consensus 14 s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~eA~~ 91 (539)
T KOG0548|consen 14 SSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYEEAIL 91 (539)
T ss_pred ccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHHHHHH
Confidence 34999999999998888866 8889999999999999999998877766654 454 4568888888888999999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCChHH-HHHHHhcCCCCChhHHHHHH-----HHHHhCCCccHHHHHHHHHHHc
Q 037256 132 VHGDIIRTGFLSDSYVQAALVDMYAKCGQTDD-GCKVFDEMSVRDLVSWTVMI-----TAYEQAEKPEEALILFQKTQQE 205 (680)
Q Consensus 132 ~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~-A~~~f~~~~~~~~~~~~~li-----~~~~~~g~~~~A~~~~~~m~~~ 205 (680)
.|..-++.. +.+...++.|.+++ ..+. +.+.|. ++..|..+. +.+...-.+..-++.+++
T Consensus 92 ay~~GL~~d-~~n~~L~~gl~~a~----~~~~~~~~~~~-----~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~---- 157 (539)
T KOG0548|consen 92 AYSEGLEKD-PSNKQLKTGLAQAY----LEDYAADQLFT-----KPYFHEKLANLPLTNYSLSDPAYVKILEIIQK---- 157 (539)
T ss_pred HHHHHhhcC-CchHHHHHhHHHhh----hHHHHhhhhcc-----CcHHHHHhhcChhhhhhhccHHHHHHHHHhhc----
Confidence 998877764 45667778888777 1111 112221 112222111 111111111111111110
Q ss_pred CCCCCH-hH---HHHHHHHHhccCChHHHHHHHHHHHHcc-------CCCChhHHHHHHHHHHhcCC-HHHHHHHHHhcC
Q 037256 206 GLLSDS-VT---IVSVASAVGQLGDVLKAQAVHGYAICNA-------FLEDLCIQNSIVAMYARCGN-VEKARLVFDMME 273 (680)
Q Consensus 206 g~~p~~-~t---~~~ll~~~~~~~~~~~a~~~~~~~~~~g-------~~~~~~~~~~Li~~y~~~g~-~~~A~~~f~~m~ 273 (680)
.|+. .. ...++.+.......+.. .....| ..|... -.......++ .++.+.
T Consensus 158 --~p~~l~~~l~d~r~m~a~~~l~~~~~~-----~~~~~~~~~~~~~~~p~~~----~~~~~~~~~d~~ee~~~------ 220 (539)
T KOG0548|consen 158 --NPTSLKLYLNDPRLMKADGQLKGVDEL-----LFYASGIEILASMAEPCKQ----EHNGFPIIEDNTEERRV------ 220 (539)
T ss_pred --CcHhhhcccccHHHHHHHHHHhcCccc-----cccccccccCCCCCCcccc----cCCCCCccchhHHHHHH------
Confidence 0100 00 00111111110000000 000000 000000 0000000000 000000
Q ss_pred CCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCC------ch
Q 037256 274 KRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKI------DA 347 (680)
Q Consensus 274 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~------~~ 347 (680)
..-..-...+.++.-+..+++.|++-+....+.. -+..-++..-.++...|........-...++.|-.. =.
T Consensus 221 k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIa 298 (539)
T KOG0548|consen 221 KEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIA 298 (539)
T ss_pred HHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHH
Confidence 0001112334444444455555555555544432 122222223333444444443333333332222110 00
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHH
Q 037256 348 TLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHI-TFTSILSACS 426 (680)
Q Consensus 348 ~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~ 426 (680)
.....+..+|.+.++++.|...|.+.....++.... .+....+++++......- +.|... -...-.+.+.
T Consensus 299 k~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l-------s~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~F 369 (539)
T KOG0548|consen 299 KALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLL-------SKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAF 369 (539)
T ss_pred HHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH-------HHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHH
Confidence 111123446777778888888887764333332221 122334555555544444 444442 1222245667
Q ss_pred ccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHH----HHH--HHHH
Q 037256 427 HAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM-PLPPNDSVWGALLLAC----RIH--GEIA 499 (680)
Q Consensus 427 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~a~----~~~--~~~~ 499 (680)
+.|++..|...+.++++.. +-|...|..-.-+|.+.|.+.+|++=.+.. .+.|+...--.--+.+ ... +.++
T Consensus 370 k~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAlea 448 (539)
T KOG0548|consen 370 KKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEA 448 (539)
T ss_pred hccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888877765 566777777777888888888777655544 3444432211111111 111 5677
Q ss_pred HHHHHccCCCCCchHHHHHHHHHh
Q 037256 500 ANYLFQLEPEHTGYFVLMSNIYAA 523 (680)
Q Consensus 500 ~~~~~~l~p~~~~~~~~l~~~~~~ 523 (680)
+.+.++++|++......+...+..
T Consensus 449 y~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 449 YQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHhcCchhHHHHHHHHHHHHH
Confidence 778888888887766666665544
No 88
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.74 E-value=3.3e-06 Score=84.59 Aligned_cols=56 Identities=20% Similarity=0.099 Sum_probs=24.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 037256 250 NSIVAMYARCGNVEKARLVFDMMEK---RDLISWNSMLTGYIQNGQASEALLLFDEMQN 305 (680)
Q Consensus 250 ~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 305 (680)
..+...|.+.|+.++|...|++..+ .+...|+.+...+...|++++|...|++..+
T Consensus 68 ~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~ 126 (296)
T PRK11189 68 YERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE 126 (296)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3333344444444444444444332 1334444444444444444444444444443
No 89
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.68 E-value=0.0004 Score=81.90 Aligned_cols=368 Identities=10% Similarity=-0.008 Sum_probs=192.3
Q ss_pred HHHHhcCChHHHHHHHhcCCCCChhH--HHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHH
Q 037256 153 DMYAKCGQTDDGCKVFDEMSVRDLVS--WTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKA 230 (680)
Q Consensus 153 ~~~~~~g~~~~A~~~f~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 230 (680)
..|...|++.+|..........+... ...........|+++.+...+..+.......+..........+...|+++++
T Consensus 349 ~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a 428 (903)
T PRK04841 349 EAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEV 428 (903)
T ss_pred HHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHH
Confidence 34555666666666555554332211 1112233445666666666665542211111222222333444566778887
Q ss_pred HHHHHHHHHccCC------CC--hhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CCh----hHHHHHHHHHHHcCChh
Q 037256 231 QAVHGYAICNAFL------ED--LCIQNSIVAMYARCGNVEKARLVFDMMEK----RDL----ISWNSMLTGYIQNGQAS 294 (680)
Q Consensus 231 ~~~~~~~~~~g~~------~~--~~~~~~Li~~y~~~g~~~~A~~~f~~m~~----~~~----~~~~~li~~~~~~g~~~ 294 (680)
...+..+...--. +. ......+...+...|++++|...+++... .+. ..++.+...+...|+++
T Consensus 429 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~ 508 (903)
T PRK04841 429 NTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELA 508 (903)
T ss_pred HHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHH
Confidence 7777766443111 11 11222233455677888888777776432 121 23455555667788888
Q ss_pred HHHHHHHHHHhCCC---CCC--HhhHHHHHHHHhhhcchHHHHHHHHHHHHc----CCC---CchHHHHHHHHHHHHcCC
Q 037256 295 EALLLFDEMQNSDC---KPN--PVTALILVSACTYLGSRQLGRKFHGYIINS----NMK---IDATLRNAVMDMYAKCGD 362 (680)
Q Consensus 295 ~A~~~~~~m~~~g~---~p~--~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~----~~~---~~~~~~~~li~~y~k~g~ 362 (680)
+|...+++.....- .+. ..+...+...+...|+++.|...+...... +.. .....+..+...+...|+
T Consensus 509 ~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~ 588 (903)
T PRK04841 509 RALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWAR 588 (903)
T ss_pred HHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcC
Confidence 88887777653211 111 223444455666778888887777665432 211 112334445556666788
Q ss_pred HHHHHHHHhhcCCC----CC--CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCHHHH-----HHHHHHHHccCC
Q 037256 363 LDTAENMFNDIHPS----ER--NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVK-PDHITF-----TSILSACSHAGL 430 (680)
Q Consensus 363 ~~~A~~~f~~~~~~----~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~-----~~ll~a~~~~g~ 430 (680)
+++|...+++.... .+ ....+..+...+...|+.++|.+.+.+.....-. .....+ ...+..+...|+
T Consensus 589 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 668 (903)
T PRK04841 589 LDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGD 668 (903)
T ss_pred HHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCC
Confidence 88877777665221 11 1223444555666777888887777776542100 001101 011233344677
Q ss_pred HHHHHHHHHHhhhcCCCcC---hHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHHHHHHHHHHccC
Q 037256 431 IDEGRKCFADMTKLSVKPE---VKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEIAANYLFQLE 507 (680)
Q Consensus 431 ~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~~~~~~l~ 507 (680)
.+.|.+.+........... ...+..+..++...|+.++|...+++.- ... .-....
T Consensus 669 ~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al------------~~~---------~~~g~~ 727 (903)
T PRK04841 669 KEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELN------------ENA---------RSLRLM 727 (903)
T ss_pred HHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------HHH---------HHhCch
Confidence 7777777665443211111 0112345556677777777777666541 000 000011
Q ss_pred CCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 037256 508 PEHTGYFVLMSNIYAASNKWREVGKLREDMKNKG 541 (680)
Q Consensus 508 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 541 (680)
+.....+..++.+|...|+.++|...+.+..+..
T Consensus 728 ~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 728 SDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 1123456778889999999999999999887643
No 90
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.67 E-value=7.8e-05 Score=77.38 Aligned_cols=296 Identities=13% Similarity=0.016 Sum_probs=155.6
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHcCC-CCCHhHH-HHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHH---HH
Q 037256 178 SWTVMITAYEQAEKPEEALILFQKTQQEGL-LSDSVTI-VSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQN---SI 252 (680)
Q Consensus 178 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~---~L 252 (680)
.|..+...+...|+++++...+.+..+... .++.... ......+...|+++++..++..+.+.. +.|...++ .+
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~ 86 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGA 86 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHH
Confidence 444444555555555555444444433211 1121111 111222344566666666666655543 22332322 11
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchH
Q 037256 253 VAMYARCGNVEKARLVFDMMEKR---DLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQ 329 (680)
Q Consensus 253 i~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 329 (680)
.......+..+.+.+.++..... .......+...+...|++++|...+++..+.. +.+...+..+..++...|+++
T Consensus 87 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~ 165 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFK 165 (355)
T ss_pred HHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHH
Confidence 11122234455555555442222 22333445556777888888888888887653 334555666677777788888
Q ss_pred HHHHHHHHHHHcCC-CCch--HHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHH----H--HHHHHHHhcCChHHHH
Q 037256 330 LGRKFHGYIINSNM-KIDA--TLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSW----N--VLIAGYGMHGHGRKAL 400 (680)
Q Consensus 330 ~a~~i~~~~~~~~~-~~~~--~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~----~--~li~~~~~~g~~~~A~ 400 (680)
+|...+....+... .++. ..+..+...+...|++++|..+|++.....|....+ + .++.-+...|....+.
T Consensus 166 eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~ 245 (355)
T cd05804 166 EGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGD 245 (355)
T ss_pred HHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHH
Confidence 88888777765432 1222 334567788888999999999998874333311111 1 2233333444332222
Q ss_pred HHHHHHHHcC--CCCC---HHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCC--------cChHHHHHHHHHHHhcCCHH
Q 037256 401 EFFSQMLEEG--VKPD---HITFTSILSACSHAGLIDEGRKCFADMTKLSVK--------PEVKHYACMVDMLGRAGCLY 467 (680)
Q Consensus 401 ~l~~~m~~~g--~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--------p~~~~~~~li~~~~~~g~~~ 467 (680)
+. +.+.... ..|+ .........++...|+.++|..+++.+....-. ..+...-...-++.+.|+.+
T Consensus 246 ~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~ 324 (355)
T cd05804 246 RW-EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYA 324 (355)
T ss_pred HH-HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHH
Confidence 22 2221110 1111 122234566778889999999999888764211 01222223334456899999
Q ss_pred HHHHHHHhC
Q 037256 468 EAFDMIKQM 476 (680)
Q Consensus 468 ~A~~~~~~m 476 (680)
+|.+.+...
T Consensus 325 ~A~~~L~~a 333 (355)
T cd05804 325 TALELLGPV 333 (355)
T ss_pred HHHHHHHHH
Confidence 999888764
No 91
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.67 E-value=5.6e-05 Score=78.44 Aligned_cols=193 Identities=9% Similarity=0.050 Sum_probs=101.5
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHhCCC-CCCccc-HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHH--
Q 037256 75 SFLWNTMIRAYANNGHCVETLELYSTMRRSGI-SSNSYT-FPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAA-- 150 (680)
Q Consensus 75 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~-- 150 (680)
...|..+...+...|+++++...+.+..+... .++... .......+...|++++|...++..++.. +.|...++.
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 44566666777777888887777766654321 112111 1111223456788888888888887764 334434331
Q ss_pred -HHHHHHhcCChHHHHHHHhcCCCCC---hhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCC
Q 037256 151 -LVDMYAKCGQTDDGCKVFDEMSVRD---LVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGD 226 (680)
Q Consensus 151 -Li~~~~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 226 (680)
+.......+..+.+.+.++.....+ ...+..+...+...|++++|.+.+++..+.. |
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--p----------------- 145 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN--P----------------- 145 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--C-----------------
Confidence 1122222345555555554422211 2233344455666666777777666666542 2
Q ss_pred hHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----Ch--hHHHHHHHHHHHcCChhHHHHH
Q 037256 227 VLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKR-----DL--ISWNSMLTGYIQNGQASEALLL 299 (680)
Q Consensus 227 ~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~-----~~--~~~~~li~~~~~~g~~~~A~~~ 299 (680)
.+...+..+...|...|++++|...+++.... +. ..|..+...+...|++++|..+
T Consensus 146 -----------------~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~ 208 (355)
T cd05804 146 -----------------DDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAI 208 (355)
T ss_pred -----------------CCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 22333344445555555555555555544321 11 2244555666667777777777
Q ss_pred HHHHH
Q 037256 300 FDEMQ 304 (680)
Q Consensus 300 ~~~m~ 304 (680)
+++..
T Consensus 209 ~~~~~ 213 (355)
T cd05804 209 YDTHI 213 (355)
T ss_pred HHHHh
Confidence 76664
No 92
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.67 E-value=0.00071 Score=69.08 Aligned_cols=129 Identities=8% Similarity=0.038 Sum_probs=87.2
Q ss_pred hhhhHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCCCC-CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCccc
Q 037256 34 TSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKS-YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYT 112 (680)
Q Consensus 34 ~~~~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 112 (680)
|+..|+.||.-+.. ...++++..++++....| ....|..-|..-....+++....+|.+-+..-. +...
T Consensus 19 di~sw~~lire~qt--------~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDL 88 (656)
T KOG1914|consen 19 DIDSWSQLIREAQT--------QPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDL 88 (656)
T ss_pred cHHHHHHHHHHHcc--------CCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhH
Confidence 88899999987665 789999999999998888 566899999999999999999999998776432 4555
Q ss_pred HHHHHHHHhc-cCChHHH----HHHHHHH-HHhCCCCc-hhHHHHHHHHH---------HhcCChHHHHHHHhcCC
Q 037256 113 FPFVLKACAS-NSLILEG----KVVHGDI-IRTGFLSD-SYVQAALVDMY---------AKCGQTDDGCKVFDEMS 172 (680)
Q Consensus 113 ~~~ll~~~~~-~~~~~~a----~~~~~~~-~~~g~~~~-~~~~~~Li~~~---------~~~g~~~~A~~~f~~~~ 172 (680)
|..-|.--.+ .++.... .+.|+.. .+.|.++- -..|+..+... ....+++..++++.++.
T Consensus 89 W~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral 164 (656)
T KOG1914|consen 89 WKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRAL 164 (656)
T ss_pred HHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHh
Confidence 6555554332 2233222 2333333 34465443 34566665543 33456777788888775
No 93
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.63 E-value=1.7e-06 Score=85.37 Aligned_cols=218 Identities=11% Similarity=0.050 Sum_probs=105.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC-CHhhHHHHHHHHhhhcchH
Q 037256 251 SIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKP-NPVTALILVSACTYLGSRQ 329 (680)
Q Consensus 251 ~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~ 329 (680)
-+.++|...|+.+.+..-...-..|.......+...+...++-+.++.-+++.......+ +..........+...|+++
T Consensus 40 ~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~ 119 (290)
T PF04733_consen 40 YQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYE 119 (290)
T ss_dssp HHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHH
T ss_pred HHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHH
Confidence 344555555655544333333233333333333222222233344444444333322221 2222222223344556666
Q ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHH---HHHHHHHHhcCChHHHHHHHHHH
Q 037256 330 LGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSW---NVLIAGYGMHGHGRKALEFFSQM 406 (680)
Q Consensus 330 ~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~l~~~m 406 (680)
.|.++.... .+.......+.+|.+.++++.|.+.++.|.+...|.... .+.+..+.-.+.+.+|..+|+++
T Consensus 120 ~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El 193 (290)
T PF04733_consen 120 EALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEEL 193 (290)
T ss_dssp HHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred HHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 665554321 234445556667777777777777777775444443322 12222222223567777777776
Q ss_pred HHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCH-HHHHHHHHhC
Q 037256 407 LEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCL-YEAFDMIKQM 476 (680)
Q Consensus 407 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m 476 (680)
.+. ..++..+.+.+..++...|++++|.+++.+....+ +-+..+...++.+....|+. +.+.+++.++
T Consensus 194 ~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 194 SDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred Hhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 543 45666666777777777777777777777665442 33445555566665666666 4555666665
No 94
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.63 E-value=0.00028 Score=74.04 Aligned_cols=36 Identities=11% Similarity=0.183 Sum_probs=26.2
Q ss_pred HHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 037256 502 YLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDM 537 (680)
Q Consensus 502 ~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 537 (680)
..+.........++.-+.-+..+|+|..|...+-++
T Consensus 1146 ~~~k~gargvd~fvaqak~weq~gd~rkav~~~lki 1181 (1636)
T KOG3616|consen 1146 EALKKGARGVDGFVAQAKEWEQAGDWRKAVDALLKI 1181 (1636)
T ss_pred HHHhccccccHHHHHHHHHHHhcccHHHHHHHHhhh
Confidence 344455555667777778888899999888877666
No 95
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.62 E-value=0.00091 Score=71.40 Aligned_cols=205 Identities=15% Similarity=0.109 Sum_probs=137.4
Q ss_pred hhhhHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCC-----------CCCcchHHHHHHHHHhCCCchHHHHHHHHHH
Q 037256 34 TSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHND-----------KSYSFLWNTMIRAYANNGHCVETLELYSTMR 102 (680)
Q Consensus 34 ~~~~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~-----------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 102 (680)
+-.+|..+-+|+.+ . .+++-|.-.+-.|.+. .|+ ..=....-.-.+.|..++|..+|++-+
T Consensus 756 S~~vW~nmA~McVk-T------~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ck 827 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVK-T------RRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCK 827 (1416)
T ss_pred hhHHHHHHHHHhhh-h------ccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHH
Confidence 77899999999999 8 8888777766666432 232 111111112246788999999999887
Q ss_pred hCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC----------
Q 037256 103 RSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMS---------- 172 (680)
Q Consensus 103 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~---------- 172 (680)
+. ..|=+.|-..|.+++|.++-+.--+..+. .+|-....-+-..++.+.|++.|++..
T Consensus 828 R~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL 895 (1416)
T KOG3617|consen 828 RY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRML 895 (1416)
T ss_pred HH---------HHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHH
Confidence 63 33445566788999998886543332221 233333344445678888888887653
Q ss_pred -------------CCChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHH
Q 037256 173 -------------VRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAIC 239 (680)
Q Consensus 173 -------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 239 (680)
.+|...|.-....+-..|+.+.|+.+|...+. |.++++..+-.|+.++|.++-++
T Consensus 896 ~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e--- 963 (1416)
T KOG3617|consen 896 KEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE--- 963 (1416)
T ss_pred HhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh---
Confidence 13555666666666677999999999887654 56677777788888888877654
Q ss_pred ccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 037256 240 NAFLEDLCIQNSIVAMYARCGNVEKARLVFDMME 273 (680)
Q Consensus 240 ~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~ 273 (680)
.-|....--|.++|-..|++.+|..+|-+..
T Consensus 964 ---sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 964 ---SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ---cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 2355555667888888888888888887654
No 96
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.61 E-value=5.5e-05 Score=82.12 Aligned_cols=468 Identities=12% Similarity=0.064 Sum_probs=244.7
Q ss_pred cccCCCChHHHHHHhhhccCCCC-CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHH--HhccCChH
Q 037256 51 KYTTYGEPNTARSLFNSIHNDKS-YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKA--CASNSLIL 127 (680)
Q Consensus 51 ~~~~~g~~~~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~--~~~~~~~~ 127 (680)
+|.+.++...|..-|+...+..| |..+|..+..+|.+.|++..|+++|.+.... .|+. +|.....+ -+..|.+.
T Consensus 571 yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~~ecd~GkYk 647 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAVMECDNGKYK 647 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHHHHHHhhhHH
Confidence 44555667777777777766666 6677888888888888888888888776553 3332 33333222 24566777
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHH-------hcCChHHHHHHHhcCCC-----------CChhHHHHHHHHHHhC
Q 037256 128 EGKVVHGDIIRTGFLSDSYVQAALVDMYA-------KCGQTDDGCKVFDEMSV-----------RDLVSWTVMITAYEQA 189 (680)
Q Consensus 128 ~a~~~~~~~~~~g~~~~~~~~~~Li~~~~-------~~g~~~~A~~~f~~~~~-----------~~~~~~~~li~~~~~~ 189 (680)
++...++.++... .......+.|...+. ..|-...|...|+.-.+ .|...|-.+-
T Consensus 648 eald~l~~ii~~~-s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~as------ 720 (1238)
T KOG1127|consen 648 EALDALGLIIYAF-SLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVAS------ 720 (1238)
T ss_pred HHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHh------
Confidence 7777776665431 111112222222222 22333333333332211 1122222221
Q ss_pred CCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCCh---H---HHHHHHHHHHHccCCCChhHHHHHHHHHHh----c
Q 037256 190 EKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDV---L---KAQAVHGYAICNAFLEDLCIQNSIVAMYAR----C 259 (680)
Q Consensus 190 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~---~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~----~ 259 (680)
.|..+|-+.. .. .|+......+..-.-..+.. + .|-+.+..-.+ +..+...|..|+..|.+ +
T Consensus 721 ----dac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l 792 (1238)
T KOG1127|consen 721 ----DACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLL 792 (1238)
T ss_pred ----HHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHc
Confidence 2333333322 11 23322222222212222222 1 11111111111 22234444444444433 2
Q ss_pred C----CHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHH
Q 037256 260 G----NVEKARLVFDMME---KRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGR 332 (680)
Q Consensus 260 g----~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 332 (680)
| +...|...+.... ..+...||+|.-. ...|++.-|...|-+-.... +-...+|..+--.|....+++.|.
T Consensus 793 ~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~ 870 (1238)
T KOG1127|consen 793 GETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAE 870 (1238)
T ss_pred CCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhh
Confidence 2 2345666666554 3577888877665 55577777777776655542 445667777777778888888888
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhc-----CC-CCCCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 037256 333 KFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDI-----HP-SERNVSSWNVLIAGYGMHGHGRKALEFFSQM 406 (680)
Q Consensus 333 ~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~-----~~-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 406 (680)
+.+....... +.+...|--.....-..|+.-++..+|..- .. .-++..-|-.-..-..++|+.++-+...+.+
T Consensus 871 ~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki 949 (1238)
T KOG1127|consen 871 PAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKI 949 (1238)
T ss_pred HHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhh
Confidence 8888776554 334444443333344567777777777652 11 1344445544444455666666555444333
Q ss_pred HHc---------CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhc-CCCcChHHHHHHH----HHHHhcCCHHHHHHH
Q 037256 407 LEE---------GVKPDHITFTSILSACSHAGLIDEGRKCFADMTKL-SVKPEVKHYACMV----DMLGRAGCLYEAFDM 472 (680)
Q Consensus 407 ~~~---------g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li----~~~~~~g~~~~A~~~ 472 (680)
-.. |.+-+...|........+.+.++.|.+...++... ..+.+...|+... +.+...|.++.|..-
T Consensus 950 ~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a 1029 (1238)
T KOG1127|consen 950 SSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKA 1029 (1238)
T ss_pred hhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhh
Confidence 221 23334457777777777888888887777765543 3345555565433 344556778877666
Q ss_pred HHhCCCCCCHhHHHHHHHHHHHH----HHHHHHHHHccCCCCCchHHH---HHHHHHhcCChhHHHHHHHHHHh
Q 037256 473 IKQMPLPPNDSVWGALLLACRIH----GEIAANYLFQLEPEHTGYFVL---MSNIYAASNKWREVGKLREDMKN 539 (680)
Q Consensus 473 ~~~m~~~p~~~~~~~ll~a~~~~----~~~~~~~~~~l~p~~~~~~~~---l~~~~~~~g~~~~A~~~~~~m~~ 539 (680)
+...+..-|.-+-.+-++.+... ....+++++.+.-++...-++ ++.....++.-+.|...+-+...
T Consensus 1030 ~~~~~~evdEdi~gt~l~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1030 SWKEWMEVDEDIRGTDLTLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred hcccchhHHHHHhhhhHHHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHH
Confidence 65554444444444444443333 566777777765554443233 33344556666777666555543
No 97
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.61 E-value=8.7e-06 Score=83.38 Aligned_cols=248 Identities=15% Similarity=0.123 Sum_probs=181.8
Q ss_pred hccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChhHHHH
Q 037256 222 GQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEK---RDLISWNSMLTGYIQNGQASEALL 298 (680)
Q Consensus 222 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~ 298 (680)
.+.|++.+|.-.|+..++.. +.+...|.-|.......++-..|+..+.+..+ .|....-+|.-.|...|.-.+|+.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 46688888888888888875 55778888888888888888888888888765 356677777788999999999999
Q ss_pred HHHHHHhCCCC--------CCHhhHHHHHHHHhhhcchHHHHHHHHH-HHHcCCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 037256 299 LFDEMQNSDCK--------PNPVTALILVSACTYLGSRQLGRKFHGY-IINSNMKIDATLRNAVMDMYAKCGDLDTAENM 369 (680)
Q Consensus 299 ~~~~m~~~g~~--------p~~~t~~~ll~a~~~~g~~~~a~~i~~~-~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~ 369 (680)
.|+.-.....+ ++..+-.. ........+....++|-. ....+..+|+.+...|.-.|--.|++++|...
T Consensus 375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 99887653210 01000000 112222233444444444 44566668999999999999999999999999
Q ss_pred HhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhhhc---
Q 037256 370 FNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHI-TFTSILSACSHAGLIDEGRKCFADMTKL--- 444 (680)
Q Consensus 370 f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~--- 444 (680)
|+.....+| |...||-|...++...+.++|+..|++.++ ++|+.+ ....|.-+|...|.+++|...|-..+..
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 999977777 477899999999999999999999999999 899986 4445666899999999999988776542
Q ss_pred C------CCcChHHHHHHHHHHHhcCCHHHHHHHHH
Q 037256 445 S------VKPEVKHYACMVDMLGRAGCLYEAFDMIK 474 (680)
Q Consensus 445 ~------~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 474 (680)
+ -.++...|.+|=.++.-.++.|-+.+...
T Consensus 531 s~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~~ 566 (579)
T KOG1125|consen 531 SRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAAP 566 (579)
T ss_pred ccccccCCcchHHHHHHHHHHHHHcCCchHHHHhcc
Confidence 1 11223466666666666666665544443
No 98
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.60 E-value=4.9e-05 Score=71.41 Aligned_cols=293 Identities=16% Similarity=0.125 Sum_probs=153.9
Q ss_pred cCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChhHHHHHHHHHHHcCChhHHHHH
Q 037256 224 LGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEK----RDLISWNSMLTGYIQNGQASEALLL 299 (680)
Q Consensus 224 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~ 299 (680)
.+++..+..+.++... +.+..+.+.......+.|+++.|.+-|....+ .....||.-+. .-+.|+++.|+++
T Consensus 125 e~Dl~g~rsLveQlp~---en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~ 200 (459)
T KOG4340|consen 125 EGDLPGSRSLVEQLPS---ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKH 200 (459)
T ss_pred cccCcchHHHHHhccC---CCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHH
Confidence 3444444444444321 12333444444455677777777777776654 23455665444 3466778888888
Q ss_pred HHHHHhCCCCCCHhh-HHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCC--
Q 037256 300 FDEMQNSDCKPNPVT-ALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPS-- 376 (680)
Q Consensus 300 ~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~-- 376 (680)
..+..++|++-.+.- ......+- ....+..-..++... -+..+|.-...+.+.|+++.|.+.+-.|.+.
T Consensus 201 iSEIieRG~r~HPElgIGm~tegi-DvrsvgNt~~lh~Sa-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE 272 (459)
T KOG4340|consen 201 ISEIIERGIRQHPELGIGMTTEGI-DVRSVGNTLVLHQSA-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAE 272 (459)
T ss_pred HHHHHHhhhhcCCccCccceeccC-chhcccchHHHHHHH-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCccc
Confidence 888887775422110 00000000 000000000111110 1223444455677899999999999999543
Q ss_pred -CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCC-CcChHHH
Q 037256 377 -ERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKP-DHITFTSILSACSHAGLIDEGRKCFADMTKLSV-KPEVKHY 453 (680)
Q Consensus 377 -~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~ 453 (680)
+.|++|...+.-. -..+++.+..+-+.-+.+. .| ...||..++-.|++..-++-|-.++.+-...-+ -.+...|
T Consensus 273 ~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~--nPfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly 349 (459)
T KOG4340|consen 273 EELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQ--NPFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLY 349 (459)
T ss_pred ccCCchhhhHHHHh-cccCCccccHHHHHHHHhc--CCCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHH
Confidence 4567776554332 2345566666666666663 44 345999999999999999988888765332211 1223333
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHH-----------HHHHHHHHccCCCC----CchHHHH
Q 037256 454 ACMVDMLG-RAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHG-----------EIAANYLFQLEPEH----TGYFVLM 517 (680)
Q Consensus 454 ~~li~~~~-~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~-----------~~~~~~~~~l~p~~----~~~~~~l 517 (680)
+. ++++. ..-..++|++-++.+. ..+..-.++-+ ..+.+++++--.+. -.+....
T Consensus 350 ~L-LdaLIt~qT~pEea~KKL~~La--------~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~YLPVlMa~ 420 (459)
T KOG4340|consen 350 DL-LDALITCQTAPEEAFKKLDGLA--------GMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKYLPVLMAQ 420 (459)
T ss_pred HH-HHHHHhCCCCHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 33333 3345566655554431 11111111111 11222222110000 1245567
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC
Q 037256 518 SNIYAASNKWREVGKLREDMKNK 540 (680)
Q Consensus 518 ~~~~~~~g~~~~A~~~~~~m~~~ 540 (680)
+++|++..++..++++|..-.+-
T Consensus 421 AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 421 AKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HHhhccccccHHHHHHHHHHHhh
Confidence 78899999999999999876653
No 99
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.60 E-value=1.5e-05 Score=72.37 Aligned_cols=189 Identities=16% Similarity=0.040 Sum_probs=92.6
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHh
Q 037256 179 WTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYAR 258 (680)
Q Consensus 179 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~ 258 (680)
...|.-+|.+.|++..|.+-+++.++.. +-+..++..+...|.+.|..+.|.+.|+..++.. +.+-.+.|.....+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 3344455555555555555555555432 1223344444444455555555555555554443 2334455555555566
Q ss_pred cCCHHHHHHHHHhcCC-C----ChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHH
Q 037256 259 CGNVEKARLVFDMMEK-R----DLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRK 333 (680)
Q Consensus 259 ~g~~~~A~~~f~~m~~-~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 333 (680)
.|++++|...|++... | -..+|..+.-+..+.|+.+.|...|++..+.. +-...+...+.......|++-.|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHH
Confidence 6666666666655443 2 23455555555566666666666666655542 2223334444444444455555555
Q ss_pred HHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHh
Q 037256 334 FHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFN 371 (680)
Q Consensus 334 i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~ 371 (680)
+++.....+. ++..+.-..|..-...|+.+.|.+.=.
T Consensus 195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~ 231 (250)
T COG3063 195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQA 231 (250)
T ss_pred HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 5544444332 444444444444444444444444333
No 100
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1.9e-05 Score=80.28 Aligned_cols=214 Identities=14% Similarity=0.115 Sum_probs=140.6
Q ss_pred HHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHh--------HHHHH
Q 037256 315 ALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVS--------SWNVL 386 (680)
Q Consensus 315 ~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~--------~~~~l 386 (680)
...+.++..+..+++.+.+-+....... .+..-++....+|...|.+..+...-+...+...... +...+
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 3455666667777888888887777665 5666677777888888877776665555422222211 12223
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChH-HHHHHHHHHHhcCC
Q 037256 387 IAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVK-HYACMVDMLGRAGC 465 (680)
Q Consensus 387 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~ 465 (680)
..+|.+.++++.|+..|.+....-..||..+ +....+++....+...- +.|... -...=...+.+.|+
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGD 373 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccC
Confidence 4466677888888888888776544444322 22233344433333322 223321 11112566788999
Q ss_pred HHHHHHHHHhC-CCCCCHhHHHHHHHHHHHH------HHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHH
Q 037256 466 LYEAFDMIKQM-PLPPNDSVWGALLLACRIH------GEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMK 538 (680)
Q Consensus 466 ~~~A~~~~~~m-~~~p~~~~~~~ll~a~~~~------~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 538 (680)
+.+|+..+.++ ...|+....-+=..+|... |..-.++.++++|+....|..-+.++....+|++|.+.+.+-.
T Consensus 374 y~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999987 5567665554444555443 5666789999999999999999999999999999999999887
Q ss_pred hCC
Q 037256 539 NKG 541 (680)
Q Consensus 539 ~~g 541 (680)
+.+
T Consensus 454 e~d 456 (539)
T KOG0548|consen 454 ELD 456 (539)
T ss_pred hcC
Confidence 654
No 101
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.49 E-value=0.00017 Score=85.12 Aligned_cols=322 Identities=13% Similarity=0.082 Sum_probs=190.4
Q ss_pred HHhcCChHHHHHHHhcCCC----CChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCC------CCCHh--HHHHHHHHHh
Q 037256 155 YAKCGQTDDGCKVFDEMSV----RDLVSWTVMITAYEQAEKPEEALILFQKTQQEGL------LSDSV--TIVSVASAVG 222 (680)
Q Consensus 155 ~~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------~p~~~--t~~~ll~~~~ 222 (680)
....|+++.+...++.++. .+..........+...|++++|...+......-- .+... ....+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 4456777777777776642 1232333444555677888888888877644210 11111 1122223445
Q ss_pred ccCChHHHHHHHHHHHHccCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHhcCC-------CC--hhHHHHHHHHHHH
Q 037256 223 QLGDVLKAQAVHGYAICNAFLEDL----CIQNSIVAMYARCGNVEKARLVFDMMEK-------RD--LISWNSMLTGYIQ 289 (680)
Q Consensus 223 ~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~Li~~y~~~g~~~~A~~~f~~m~~-------~~--~~~~~~li~~~~~ 289 (680)
..|+++.+...+......-...+. ...+.+...+...|++++|...+++... +. ..++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 678888888888877653212221 2345566677788888888888777642 11 2344555667778
Q ss_pred cCChhHHHHHHHHHHh----CCCC--C-CHhhHHHHHHHHhhhcchHHHHHHHHHHHHc----CCCCchHHHHHHHHHHH
Q 037256 290 NGQASEALLLFDEMQN----SDCK--P-NPVTALILVSACTYLGSRQLGRKFHGYIINS----NMKIDATLRNAVMDMYA 358 (680)
Q Consensus 290 ~g~~~~A~~~~~~m~~----~g~~--p-~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~----~~~~~~~~~~~li~~y~ 358 (680)
.|++++|...+++... .+.. + ....+..+...+...|+++.|...+...... +.......+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 8888888888777654 2211 1 2233444455566778888888887776542 21112334445666778
Q ss_pred HcCCHHHHHHHHhhcCCC---CCCHhHH-----HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHc
Q 037256 359 KCGDLDTAENMFNDIHPS---ERNVSSW-----NVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHI---TFTSILSACSH 427 (680)
Q Consensus 359 k~g~~~~A~~~f~~~~~~---~~~~~~~-----~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~---t~~~ll~a~~~ 427 (680)
..|+.++|.+.++..... ......+ ...+..+...|+.+.|.+.+.+........... .+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 888888888887766221 1111111 112244556788888888876654321111111 13455567778
Q ss_pred cCCHHHHHHHHHHhhhc----CCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256 428 AGLIDEGRKCFADMTKL----SVKPE-VKHYACMVDMLGRAGCLYEAFDMIKQM 476 (680)
Q Consensus 428 ~g~~~~a~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 476 (680)
.|+.++|...+++.... |..++ ..+...+..++.+.|+.++|.+.+.+.
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~A 757 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEA 757 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888888888877653 33322 345566677788889988888888776
No 102
>PF12854 PPR_1: PPR repeat
Probab=98.48 E-value=2.4e-07 Score=58.26 Aligned_cols=33 Identities=27% Similarity=0.477 Sum_probs=26.8
Q ss_pred cCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 037256 241 AFLEDLCIQNSIVAMYARCGNVEKARLVFDMME 273 (680)
Q Consensus 241 g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~ 273 (680)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677888888888888888888888888888774
No 103
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.47 E-value=5.3e-06 Score=81.97 Aligned_cols=155 Identities=15% Similarity=0.107 Sum_probs=97.0
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhh----hcchH
Q 037256 254 AMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTY----LGSRQ 329 (680)
Q Consensus 254 ~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~ 329 (680)
.+|...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+.. +..+...+..++.. ...+.
T Consensus 110 ~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~---eD~~l~qLa~awv~l~~g~e~~~ 184 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQID---EDSILTQLAEAWVNLATGGEKYQ 184 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS---CCHHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhCchhHH
Confidence 3455566666666666554 344555556667777777777777777776532 23344444444322 23567
Q ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCCh-HHHHHHHHHHH
Q 037256 330 LGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHG-RKALEFFSQML 407 (680)
Q Consensus 330 ~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~-~~A~~l~~~m~ 407 (680)
.|..+|+++.+. +.+++.+.|.+..+....|++++|++++.+.....| |..+...+|......|+. +.+.+++.++.
T Consensus 185 ~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 185 DAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp HHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 777777775443 456777788888888888888888888888755544 455666677777777777 66778888888
Q ss_pred HcCCCCCHH
Q 037256 408 EEGVKPDHI 416 (680)
Q Consensus 408 ~~g~~p~~~ 416 (680)
. ..|+..
T Consensus 264 ~--~~p~h~ 270 (290)
T PF04733_consen 264 Q--SNPNHP 270 (290)
T ss_dssp H--HTTTSH
T ss_pred H--hCCCCh
Confidence 7 466654
No 104
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.47 E-value=0.00079 Score=64.79 Aligned_cols=92 Identities=15% Similarity=0.130 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHH---HHHHhCCCccHHHHHHHHHHHcCCCCCHhHHH-HHHHHHh
Q 037256 147 VQAALVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMI---TAYEQAEKPEEALILFQKTQQEGLLSDSVTIV-SVASAVG 222 (680)
Q Consensus 147 ~~~~Li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~ 222 (680)
-.--|...+...|++.+|+.-|....+-|+..|.++. ..|...|+...|+.-+.+.++. +||-..-. .-...+.
T Consensus 40 khlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vll 117 (504)
T KOG0624|consen 40 KHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLL 117 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhh
Confidence 3344556666778888888888888877777777664 4577778888888777777663 56533211 1112234
Q ss_pred ccCChHHHHHHHHHHHHc
Q 037256 223 QLGDVLKAQAVHGYAICN 240 (680)
Q Consensus 223 ~~~~~~~a~~~~~~~~~~ 240 (680)
+.|.++.|..-|..+++.
T Consensus 118 K~Gele~A~~DF~~vl~~ 135 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQH 135 (504)
T ss_pred hcccHHHHHHHHHHHHhc
Confidence 555555555555555544
No 105
>PF12854 PPR_1: PPR repeat
Probab=98.46 E-value=2.7e-07 Score=58.00 Aligned_cols=32 Identities=31% Similarity=0.624 Sum_probs=18.5
Q ss_pred CCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256 445 SVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM 476 (680)
Q Consensus 445 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 476 (680)
|+.||..+|++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555555
No 106
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.46 E-value=0.0027 Score=65.02 Aligned_cols=398 Identities=11% Similarity=0.112 Sum_probs=225.3
Q ss_pred CC-CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHH
Q 037256 72 KS-YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAA 150 (680)
Q Consensus 72 ~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 150 (680)
.| |+.+|+.||+-+... ..+++.+.++++... .+-....|..-+..-...++++..+.+|.+.+..-+ +...|..
T Consensus 16 nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~l 91 (656)
T KOG1914|consen 16 NPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKL 91 (656)
T ss_pred CCccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHH
Confidence 56 899999999987666 899999999999864 223556788888888899999999999999887643 4555665
Q ss_pred HHHHHHh-cCChHHHH----HHHhc------CCCCChhHHHHHHHH---------HHhCCCccHHHHHHHHHHHcCCCC-
Q 037256 151 LVDMYAK-CGQTDDGC----KVFDE------MSVRDLVSWTVMITA---------YEQAEKPEEALILFQKTQQEGLLS- 209 (680)
Q Consensus 151 Li~~~~~-~g~~~~A~----~~f~~------~~~~~~~~~~~li~~---------~~~~g~~~~A~~~~~~m~~~g~~p- 209 (680)
.++--.+ .|+...+. +.|+- |.-..-..|+..+.- |.++.+.+...++|+++....+.-
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nl 171 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNL 171 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccH
Confidence 5542222 23333321 22221 222233446655533 334445666777777776532211
Q ss_pred -----CHhHHHHHHHHH-------hccCChHHHHHHHHHHHH--ccCCCChhH---------------HHHHHHHHHhcC
Q 037256 210 -----DSVTIVSVASAV-------GQLGDVLKAQAVHGYAIC--NAFLEDLCI---------------QNSIVAMYARCG 260 (680)
Q Consensus 210 -----~~~t~~~ll~~~-------~~~~~~~~a~~~~~~~~~--~g~~~~~~~---------------~~~Li~~y~~~g 260 (680)
|-.+|..-++.. -+...+..|.+++.++.. .|+..+..+ |-.+|..=-..+
T Consensus 172 EkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNp 251 (656)
T KOG1914|consen 172 EKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNP 251 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCC
Confidence 111121111111 122345556666655543 232221111 222221100000
Q ss_pred ------CHH--HHHHHHHhcCC---CChhHHHH-------HHHHHHHcCC-------hhHHHHHHHHHHhCCCCCCHhhH
Q 037256 261 ------NVE--KARLVFDMMEK---RDLISWNS-------MLTGYIQNGQ-------ASEALLLFDEMQNSDCKPNPVTA 315 (680)
Q Consensus 261 ------~~~--~A~~~f~~m~~---~~~~~~~~-------li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~t~ 315 (680)
..- ...-++++... -.+..|-- .-..+...|+ .+++..++++....-..-+..+|
T Consensus 252 L~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly 331 (656)
T KOG1914|consen 252 LRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLY 331 (656)
T ss_pred cccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 00000000000 00111110 0112223333 34555566555443223333333
Q ss_pred HHHHHHHhhh---cchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCC--CC-CHhHHHHHHHH
Q 037256 316 LILVSACTYL---GSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPS--ER-NVSSWNVLIAG 389 (680)
Q Consensus 316 ~~ll~a~~~~---g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~--~~-~~~~~~~li~~ 389 (680)
..+..---.. ...+....++..+...-...-..+|..+++.-.+..-+..|+.+|.+..+. .+ ++...++++.-
T Consensus 332 ~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy 411 (656)
T KOG1914|consen 332 FALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEY 411 (656)
T ss_pred HHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHH
Confidence 3333221111 124455555655555433334567778888888888899999999988544 23 67788889888
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcC--hHHHHHHHHHHHhcCCH
Q 037256 390 YGMHGHGRKALEFFSQMLEEGVKPDHI-TFTSILSACSHAGLIDEGRKCFADMTKLSVKPE--VKHYACMVDMLGRAGCL 466 (680)
Q Consensus 390 ~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~ 466 (680)
|| .++.+-|.++|+--... -+|.. -....+.-+++.++-..+..+|++....++.|+ ...|..+++-=..-|++
T Consensus 412 ~c-skD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL 488 (656)
T KOG1914|consen 412 YC-SKDKETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDL 488 (656)
T ss_pred Hh-cCChhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccH
Confidence 87 46778899999865553 33443 445566777888888999999999988865555 57899999988889999
Q ss_pred HHHHHHHHhC
Q 037256 467 YEAFDMIKQM 476 (680)
Q Consensus 467 ~~A~~~~~~m 476 (680)
..+.++-+++
T Consensus 489 ~si~~lekR~ 498 (656)
T KOG1914|consen 489 NSILKLEKRR 498 (656)
T ss_pred HHHHHHHHHH
Confidence 9888887765
No 107
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.46 E-value=0.00026 Score=66.65 Aligned_cols=180 Identities=8% Similarity=-0.024 Sum_probs=125.2
Q ss_pred CChHHHHHHhhhccCCCC-CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHH-HHHHhccCChHHHHHHH
Q 037256 56 GEPNTARSLFNSIHNDKS-YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFV-LKACASNSLILEGKVVH 133 (680)
Q Consensus 56 g~~~~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~~~~~~a~~~~ 133 (680)
.++++|++++..-.++.| +....+.+...|-...++..|-+.|+++-.. .|...-|..- ...+.+.+.+..|..+.
T Consensus 24 ~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ADALrV~ 101 (459)
T KOG4340|consen 24 ARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYADALRVA 101 (459)
T ss_pred hhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 678888888888888877 6666777777888888899999999988764 3433333221 23445666777777777
Q ss_pred HHHHHhCCCCchhHHHHHHH----HHHhcCChHHHHHHHhcCC-CCChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCC
Q 037256 134 GDIIRTGFLSDSYVQAALVD----MYAKCGQTDDGCKVFDEMS-VRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLL 208 (680)
Q Consensus 134 ~~~~~~g~~~~~~~~~~Li~----~~~~~g~~~~A~~~f~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 208 (680)
..|... ....+..+. ..-..+++..++.+.++.+ +.+..+.+...-...+.|++++|++-|....+-+--
T Consensus 102 ~~~~D~-----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGy 176 (459)
T KOG4340|consen 102 FLLLDN-----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGY 176 (459)
T ss_pred HHhcCC-----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCC
Confidence 665432 222222221 1234688888899999888 466666666666777889999999999888776544
Q ss_pred CCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCC
Q 037256 209 SDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFL 243 (680)
Q Consensus 209 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 243 (680)
.....|+..+.- -+.++.+.|.+...+++++|+.
T Consensus 177 qpllAYniALaH-y~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 177 QPLLAYNLALAH-YSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred CchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhh
Confidence 455667666544 4668888999988888888754
No 108
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.45 E-value=5e-06 Score=85.10 Aligned_cols=214 Identities=13% Similarity=0.097 Sum_probs=164.8
Q ss_pred hhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHH
Q 037256 323 TYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALE 401 (680)
Q Consensus 323 ~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~ 401 (680)
.+.|++..|.-.|+..++.. +-+...|.-|...-...++-..|+..+++..+.+| |....-+|...|...|.-.+|++
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 46677788888888777766 55778888888888888888888888888866665 46778888888999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHH--------HHHHHccCCHHHHHHHHHHhhhc-CCCcChHHHHHHHHHHHhcCCHHHHHHH
Q 037256 402 FFSQMLEEGVKPDHITFTSI--------LSACSHAGLIDEGRKCFADMTKL-SVKPEVKHYACMVDMLGRAGCLYEAFDM 472 (680)
Q Consensus 402 l~~~m~~~g~~p~~~t~~~l--------l~a~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~ 472 (680)
.++.-+... |-..-...- -........+....++|-.+... +..+|..++.+|.-.|--.|.+++|.+.
T Consensus 375 ~L~~Wi~~~--p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRNK--PKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHhC--ccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 998887632 211100000 01222233345566667666665 7678888999999999999999999999
Q ss_pred HHhC-CCCCC-HhHHHHHHHHHHHH-----HHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 037256 473 IKQM-PLPPN-DSVWGALLLACRIH-----GEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKN 539 (680)
Q Consensus 473 ~~~m-~~~p~-~~~~~~ll~a~~~~-----~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 539 (680)
|+.. ..+|+ ...||-|-...... |..+..+++++.|.-..+.+.|+-.|...|.++||.+.+-....
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9987 77785 56899887777654 88899999999999999999999999999999999999887654
No 109
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.41 E-value=0.0061 Score=66.83 Aligned_cols=406 Identities=13% Similarity=0.085 Sum_probs=221.8
Q ss_pred HHHhccccccHHHHHHHhh---hhhhHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCC----CCCcchHHHHHHHHHh
Q 037256 15 LLKSCNFLASLRQIHSSLT---TSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHND----KSYSFLWNTMIRAYAN 87 (680)
Q Consensus 15 ~l~~~~~~~~~~~~h~~~~---~~~~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~----~p~~~~~~~li~~~~~ 87 (680)
++..|-..+-++..-+.++ |+-+|+..++- .-..-+++.++..+. ..|...-+.-+.++..
T Consensus 929 lI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e------------~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMt 996 (1666)
T KOG0985|consen 929 LINVCNENSLFKSQARYLVERSDPDLWAKVLNE------------ENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMT 996 (1666)
T ss_pred HHHhcCchhHHHHHHHHHHhccChHHHHHHHhc------------cChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHh
Confidence 5566655444455555555 77777777631 111122333333211 1144445566788888
Q ss_pred CCCchHHHHHHHHHHhCCCC--CCcccHHHHHHHHhccCChHHHHHHHHHHHHhC-----------------------CC
Q 037256 88 NGHCVETLELYSTMRRSGIS--SNSYTFPFVLKACASNSLILEGKVVHGDIIRTG-----------------------FL 142 (680)
Q Consensus 88 ~g~~~~A~~~~~~m~~~g~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-----------------------~~ 142 (680)
.+-+.+-++++++..-..-. -+...-+.|+-...+. +.....+..+.+-..+ +.
T Consensus 997 adLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~ 1075 (1666)
T KOG0985|consen 997 ADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFD 1075 (1666)
T ss_pred cCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhc
Confidence 89999999999887643211 1111122222222222 1222222222221111 11
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHh
Q 037256 143 SDSYVQAALVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVG 222 (680)
Q Consensus 143 ~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 222 (680)
.+....+.||. .-+.++.|.+.-++..+ ...|+.+..+-.+.|...+|++-|-+. -|...|..++..+.
T Consensus 1076 ~n~~A~~VLie---~i~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~ 1144 (1666)
T KOG0985|consen 1076 MNVSAIQVLIE---NIGSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVAS 1144 (1666)
T ss_pred ccHHHHHHHHH---HhhhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHH
Confidence 22222222222 22444444444444433 457999999999999999999988653 46778999999999
Q ss_pred ccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHH
Q 037256 223 QLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDE 302 (680)
Q Consensus 223 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 302 (680)
+.|.+++-..++..+.+..-+|.+ -+.||-+|++.+++.+-+++.. .||..-...+..-|...|.++.|.-+|..
T Consensus 1145 ~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~ 1219 (1666)
T KOG0985|consen 1145 RTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLYSN 1219 (1666)
T ss_pred hcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHHHH
Confidence 999999999999888887766654 4689999999999988777653 35555555566666666777666655543
Q ss_pred HHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCC--CCCH
Q 037256 303 MQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPS--ERNV 380 (680)
Q Consensus 303 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~--~~~~ 380 (680)
. ..|..+...+...|.++.|..--+. ..+..+|..+-.++...+.+.-|. |... --..
T Consensus 1220 v---------SN~a~La~TLV~LgeyQ~AVD~aRK------Ans~ktWK~VcfaCvd~~EFrlAQ-----iCGL~iivha 1279 (1666)
T KOG0985|consen 1220 V---------SNFAKLASTLVYLGEYQGAVDAARK------ANSTKTWKEVCFACVDKEEFRLAQ-----ICGLNIIVHA 1279 (1666)
T ss_pred h---------hhHHHHHHHHHHHHHHHHHHHHhhh------ccchhHHHHHHHHHhchhhhhHHH-----hcCceEEEeh
Confidence 2 2345555555556665555443322 124455555555555444443331 2110 0112
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhhhc-CCCc------ChHH
Q 037256 381 SSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH-ITFTSILSACSHAGLIDEGRKCFADMTKL-SVKP------EVKH 452 (680)
Q Consensus 381 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~p------~~~~ 452 (680)
.-..-++.-|...|-+++-+.+++.-.. +.--. ..|+-|.-.|++ =++++..+.++..-.+ +++. ....
T Consensus 1280 deLeeli~~Yq~rGyFeElIsl~Ea~LG--LERAHMgmfTELaiLYsk-ykp~km~EHl~LFwsRvNipKviRA~eqahl 1356 (1666)
T KOG0985|consen 1280 DELEELIEYYQDRGYFEELISLLEAGLG--LERAHMGMFTELAILYSK-YKPEKMMEHLKLFWSRVNIPKVIRAAEQAHL 1356 (1666)
T ss_pred HhHHHHHHHHHhcCcHHHHHHHHHhhhc--hhHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 2344566666666777766666654432 22222 234444444443 2334444333332222 2211 2346
Q ss_pred HHHHHHHHHhcCCHHHHHHH
Q 037256 453 YACMVDMLGRAGCLYEAFDM 472 (680)
Q Consensus 453 ~~~li~~~~~~g~~~~A~~~ 472 (680)
|+-++-.|.+-..++.|.-.
T Consensus 1357 W~ElvfLY~~y~eyDNAa~t 1376 (1666)
T KOG0985|consen 1357 WSELVFLYDKYEEYDNAALT 1376 (1666)
T ss_pred HHHHHHHHHhhhhhhHHHHH
Confidence 77777777777777765433
No 110
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.41 E-value=1.3e-05 Score=84.20 Aligned_cols=218 Identities=12% Similarity=0.160 Sum_probs=179.2
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 037256 242 FLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSA 321 (680)
Q Consensus 242 ~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 321 (680)
++|-...-..+...+..+|-...|..+|++. ..|.-.|.+|...|+..+|..+..+-.+ -+||..-|..+.+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 4455556677889999999999999999975 5688899999999999999999988887 38999999999999
Q ss_pred HhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHH
Q 037256 322 CTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKAL 400 (680)
Q Consensus 322 ~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~ 400 (680)
..+..-+++|.++.+..... .-..+.....+.++++++.+.|+.-....| -..+|-.+..+..+.+++..|.
T Consensus 467 ~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHH
Confidence 88888899999888765332 111122222346899999999997644444 4678998998999999999999
Q ss_pred HHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256 401 EFFSQMLEEGVKPDHI-TFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM 476 (680)
Q Consensus 401 ~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 476 (680)
+.|..-.. ..||.. .|+.+-.+|.+.++-.+|...+.+..+-+ .-+...|...+-...+.|.+++|.+.+.++
T Consensus 540 ~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 540 KAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 99999988 789876 89999999999999999999999999876 445556766777788999999999999887
No 111
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.39 E-value=1.4e-05 Score=84.02 Aligned_cols=229 Identities=14% Similarity=0.105 Sum_probs=138.1
Q ss_pred HHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcC
Q 037256 181 VMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCG 260 (680)
Q Consensus 181 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g 260 (680)
.+...+...|-..+|+.+|++... +..++..|...|+..+|..+..+..+ -+||...|..|.+......
T Consensus 403 ~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChH
Confidence 344455555555666666555432 33344444555555555555444444 2566666666666665556
Q ss_pred CHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHH
Q 037256 261 NVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIIN 340 (680)
Q Consensus 261 ~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~ 340 (680)
-+++|.++++....+--.+|+.+ ..++++++++.+.|+.-.+..
T Consensus 472 ~yEkawElsn~~sarA~r~~~~~---~~~~~~fs~~~~hle~sl~~n--------------------------------- 515 (777)
T KOG1128|consen 472 LYEKAWELSNYISARAQRSLALL---ILSNKDFSEADKHLERSLEIN--------------------------------- 515 (777)
T ss_pred HHHHHHHHhhhhhHHHHHhhccc---cccchhHHHHHHHHHHHhhcC---------------------------------
Confidence 67777777766544322222222 233677777777776655432
Q ss_pred cCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 037256 341 SNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERN-VSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFT 419 (680)
Q Consensus 341 ~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 419 (680)
+....+|-.+..++.++++++.|.+.|.......|| ..+||.+-.+|.+.|+-.+|...+.+..+...+ +...|-
T Consensus 516 ---plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWE 591 (777)
T KOG1128|consen 516 ---PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWE 591 (777)
T ss_pred ---ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeee
Confidence 223445555666677788888888888877666665 567888888888888888888888888876532 233344
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhc-CCCcChHHHHHHHHHH
Q 037256 420 SILSACSHAGLIDEGRKCFADMTKL-SVKPEVKHYACMVDML 460 (680)
Q Consensus 420 ~ll~a~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~ 460 (680)
..+-.....|.+++|.+.+.++... ....|..+-..++...
T Consensus 592 Nymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 592 NYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTV 633 (777)
T ss_pred chhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHH
Confidence 4444567788888888888887765 2222555555454433
No 112
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.34 E-value=1.9e-05 Score=76.53 Aligned_cols=163 Identities=11% Similarity=0.081 Sum_probs=90.3
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH----HH
Q 037256 347 ATLRNAVMDMYAKCGDLDTAENMFNDIHPSERN----VSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHI----TF 418 (680)
Q Consensus 347 ~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~ 418 (680)
...+..+...|.+.|++++|...|+++....|+ ..+|..+..+|...|++++|+..++++.+ ..|+.. ++
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a~ 110 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR--LHPNHPDADYAY 110 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCchHHHH
Confidence 334444555555566666666666555333332 12445555555666666666666666655 233221 22
Q ss_pred HHHHHHHHcc--------CCHHHHHHHHHHhhhcCCCcCh-HHH-----------------HHHHHHHHhcCCHHHHHHH
Q 037256 419 TSILSACSHA--------GLIDEGRKCFADMTKLSVKPEV-KHY-----------------ACMVDMLGRAGCLYEAFDM 472 (680)
Q Consensus 419 ~~ll~a~~~~--------g~~~~a~~~~~~m~~~~~~p~~-~~~-----------------~~li~~~~~~g~~~~A~~~ 472 (680)
..+..++... |+.++|.+.|+.+.+.. |+. ..+ ..+.+.|.+.|++++|...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~ 188 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINR 188 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 2233333322 45555666666555431 211 111 1334455566666666655
Q ss_pred HHhCCCCCCHhHHHHHHHHHHHHHHHHHHHHHccCCC---CCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 037256 473 IKQMPLPPNDSVWGALLLACRIHGEIAANYLFQLEPE---HTGYFVLMSNIYAASNKWREVGKLREDMKNK 540 (680)
Q Consensus 473 ~~~m~~~p~~~~~~~ll~a~~~~~~~~~~~~~~l~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 540 (680)
+++. ++..|+ .+..+..++.+|.+.|++++|.++++.+..+
T Consensus 189 ~~~a---------------------------l~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 189 FETV---------------------------VENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHH---------------------------HHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5543 334443 3468889999999999999999999988764
No 113
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=0.0093 Score=65.51 Aligned_cols=42 Identities=10% Similarity=0.101 Sum_probs=23.2
Q ss_pred HHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccC
Q 037256 82 IRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNS 124 (680)
Q Consensus 82 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 124 (680)
+.-.-+.++.+--+..++.....|.+ |..|+++|.+.|...+
T Consensus 845 v~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSN 886 (1666)
T KOG0985|consen 845 VEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSN 886 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCC
Confidence 33334444555555555666666654 6666666666665443
No 114
>PLN02789 farnesyltranstransferase
Probab=98.27 E-value=0.00024 Score=71.23 Aligned_cols=181 Identities=12% Similarity=0.095 Sum_probs=100.7
Q ss_pred HHHHHcC-CHHHHHHHHhhcCCC-CCCHhHHHHHHHHHHhcCCh--HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccC
Q 037256 355 DMYAKCG-DLDTAENMFNDIHPS-ERNVSSWNVLIAGYGMHGHG--RKALEFFSQMLEEGVKPD-HITFTSILSACSHAG 429 (680)
Q Consensus 355 ~~y~k~g-~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~--~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g 429 (680)
.++.+.| .+++++..++++... ..+..+|+.....+.+.|+. ++++.+++++.+ ..|. ..+|.....++.+.|
T Consensus 79 ~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~ 156 (320)
T PLN02789 79 LCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLG 156 (320)
T ss_pred HHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhh
Confidence 3333444 355666666555333 23444555544444444442 456666666665 3443 346666666666666
Q ss_pred CHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhc---CCH----HHHHHHHHhC-CCCC-CHhHHHHHHHHHHHH-----
Q 037256 430 LIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRA---GCL----YEAFDMIKQM-PLPP-NDSVWGALLLACRIH----- 495 (680)
Q Consensus 430 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~----~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~----- 495 (680)
+++++++.++++++.+ .-+...|+.....+.+. |.. ++++++..++ ...| |...|+-+.+.+..+
T Consensus 157 ~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~ 235 (320)
T PLN02789 157 GWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALV 235 (320)
T ss_pred hHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccc
Confidence 6777777777666654 23334444444333332 222 3455555333 4444 456777666666552
Q ss_pred ----HHHHHHHHHccCCCCCchHHHHHHHHHhcC------------------ChhHHHHHHHHHH
Q 037256 496 ----GEIAANYLFQLEPEHTGYFVLMSNIYAASN------------------KWREVGKLREDMK 538 (680)
Q Consensus 496 ----~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~m~ 538 (680)
+......++..+|+++.+...|+++|+... ..++|.++.+.+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 236 SDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred cchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 334455666778888888888999987632 2356777777773
No 115
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.26 E-value=0.00032 Score=78.97 Aligned_cols=222 Identities=16% Similarity=0.157 Sum_probs=165.4
Q ss_pred CHhHHHHHHHHHhccCChHHHHHHHHHHHHcc-C---CCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-C-hhHHHHH
Q 037256 210 DSVTIVSVASAVGQLGDVLKAQAVHGYAICNA-F---LEDLCIQNSIVAMYARCGNVEKARLVFDMMEKR-D-LISWNSM 283 (680)
Q Consensus 210 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~---~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~-~-~~~~~~l 283 (680)
+...|..-|......++.+.|+++.+++++.= + ..-..+|.+++++-..-|.-+...++|++..+- | ...|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 34456666777777888888888888777642 1 123457888888888888888888999988763 3 4567888
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCC-CCchHHHHHHHHHHHHcCC
Q 037256 284 LTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNM-KIDATLRNAVMDMYAKCGD 362 (680)
Q Consensus 284 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~-~~~~~~~~~li~~y~k~g~ 362 (680)
...|.+.+.+++|.++|+.|.+.- .-....|...+..+.+...-+.|..++.++.+.=. .-......-.+.+-.++|+
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 889999999999999999998752 34556777788888888888888888888776421 1245566666777889999
Q ss_pred HHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCCHH
Q 037256 363 LDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH--ITFTSILSACSHAGLID 432 (680)
Q Consensus 363 ~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~ 432 (680)
.+.++.+|+......| -...|+..|..=.++|+.+.+..+|++....++.|-. ..|.-.|..=.+.|+-+
T Consensus 1616 aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 9999999998855443 5778999999999999999999999999998887765 35555555444445433
No 116
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.22 E-value=0.0001 Score=68.76 Aligned_cols=148 Identities=10% Similarity=0.156 Sum_probs=100.7
Q ss_pred HHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHH
Q 037256 354 MDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKP-DHITFTSILSACSHAGLID 432 (680)
Q Consensus 354 i~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~ 432 (680)
+-.|.+.|+++.+....+.+..... .|...++.++++..+++..+. .| |...|..+...|...|+++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~~----------~~~~~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~ 90 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPLH----------QFASQQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYD 90 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCccc----------cccCchhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHH
Confidence 4567777777776555544311110 111245566777777776663 34 4456777777778888888
Q ss_pred HHHHHHHHhhhcCCCcChHHHHHHHHHH-HhcCC--HHHHHHHHHhCCCCCCHhHHHHHHHHHHHHHHHHHHHHHccCCC
Q 037256 433 EGRKCFADMTKLSVKPEVKHYACMVDML-GRAGC--LYEAFDMIKQMPLPPNDSVWGALLLACRIHGEIAANYLFQLEPE 509 (680)
Q Consensus 433 ~a~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~--~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~~~~~~l~p~ 509 (680)
+|...|++..+.. +.+...+..+..++ .+.|+ .++|.++++ ++++++|+
T Consensus 91 ~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~---------------------------~al~~dP~ 142 (198)
T PRK10370 91 NALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMID---------------------------KALALDAN 142 (198)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHH---------------------------HHHHhCCC
Confidence 8888888777653 34566666666653 55565 356655554 45678899
Q ss_pred CCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 037256 510 HTGYFVLMSNIYAASNKWREVGKLREDMKNKG 541 (680)
Q Consensus 510 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 541 (680)
++.++..++..+...|++++|...++++.+..
T Consensus 143 ~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 143 EVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999998753
No 117
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.19 E-value=0.00011 Score=71.34 Aligned_cols=184 Identities=12% Similarity=-0.042 Sum_probs=115.9
Q ss_pred CCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH---hhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCch--H
Q 037256 274 KRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNP---VTALILVSACTYLGSRQLGRKFHGYIINSNMKIDA--T 348 (680)
Q Consensus 274 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~--~ 348 (680)
......+..+...+.+.|++++|...|+++.... +.+. .++..+..++...|+++.|...++.+.+....... .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 3456778888888999999999999999987653 2222 35566667777888888888888887765422111 1
Q ss_pred HHHHHHHHHHHc--------CCHHHHHHHHhhcCCCCCCH-hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 037256 349 LRNAVMDMYAKC--------GDLDTAENMFNDIHPSERNV-SSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFT 419 (680)
Q Consensus 349 ~~~~li~~y~k~--------g~~~~A~~~f~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 419 (680)
.+..+...|.+. |+.++|.+.|+++....|+. ..+..+..... ... ... ....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~----~~~-------~~~-------~~~~ 170 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY----LRN-------RLA-------GKEL 170 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH----HHH-------HHH-------HHHH
Confidence 344445555544 56677777777664444432 22222111100 000 000 0012
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhc--CCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256 420 SILSACSHAGLIDEGRKCFADMTKL--SVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM 476 (680)
Q Consensus 420 ~ll~a~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 476 (680)
.+...+.+.|++++|...++...+. +-+.....+..+...+.+.|++++|...++.+
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l 229 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVL 229 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3445677889999999998888876 22334567888888899999999998888776
No 118
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.18 E-value=5.5e-05 Score=66.60 Aligned_cols=110 Identities=9% Similarity=-0.017 Sum_probs=77.9
Q ss_pred HHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhhhcCC
Q 037256 368 NMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH-ITFTSILSACSHAGLIDEGRKCFADMTKLSV 446 (680)
Q Consensus 368 ~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 446 (680)
.+|++..+..|+ .+..+...+.+.|++++|...|++... ..|+. ..+..+..++...|++++|...|+...+..
T Consensus 14 ~~~~~al~~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~- 88 (144)
T PRK15359 14 DILKQLLSVDPE--TVYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD- 88 (144)
T ss_pred HHHHHHHHcCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-
Confidence 445554333443 355566677788888888888888877 55544 477777778888888888888888888754
Q ss_pred CcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH
Q 037256 447 KPEVKHYACMVDMLGRAGCLYEAFDMIKQM-PLPPND 482 (680)
Q Consensus 447 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~ 482 (680)
+.+...+..+..++.+.|++++|...+++. ...|+.
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~ 125 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYAD 125 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 456777778888888888888888887764 344443
No 119
>PLN02789 farnesyltranstransferase
Probab=98.16 E-value=0.00043 Score=69.46 Aligned_cols=199 Identities=7% Similarity=-0.022 Sum_probs=112.7
Q ss_pred CChHHHHHHhhhccCCCC-CcchHHHHHHHHHhCC-CchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCC--hHHHHH
Q 037256 56 GEPNTARSLFNSIHNDKS-YSFLWNTMIRAYANNG-HCVETLELYSTMRRSGISSNSYTFPFVLKACASNSL--ILEGKV 131 (680)
Q Consensus 56 g~~~~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~--~~~a~~ 131 (680)
++.++|+.+.+.+....| +..+|+.--..+...| .+++++..++++.+...+ +..+|+..-..+.+.+. .+++..
T Consensus 51 e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~el~ 129 (320)
T PLN02789 51 ERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKELE 129 (320)
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHHHH
Confidence 778888888888877777 4556776666666666 567888888887766433 33455544434444443 245566
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhHHHHHHHHHHhC---CCc----cHHHHHHHH
Q 037256 132 VHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSV---RDLVSWTVMITAYEQA---EKP----EEALILFQK 201 (680)
Q Consensus 132 ~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~---g~~----~~A~~~~~~ 201 (680)
+.+.+++.. +.+..+|+.....+.+.|++++|++.++++.+ +|..+|+.....+.+. |.. +++++...+
T Consensus 130 ~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~ 208 (320)
T PLN02789 130 FTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTID 208 (320)
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHH
Confidence 666666654 44566777777777777777777777777653 3555666655544443 222 244555545
Q ss_pred HHHcCCCCCHhHHHHHHHHHhcc----CChHHHHHHHHHHHHccCCCChhHHHHHHHHHHh
Q 037256 202 TQQEGLLSDSVTIVSVASAVGQL----GDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYAR 258 (680)
Q Consensus 202 m~~~g~~p~~~t~~~ll~~~~~~----~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~ 258 (680)
++... +-|...|+.+...+... +...++......+.+.+ +.+......|++.|+.
T Consensus 209 aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 209 AILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 54432 23444454444444431 22334545554444422 2334445555555553
No 120
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.14 E-value=0.00038 Score=78.43 Aligned_cols=196 Identities=14% Similarity=0.130 Sum_probs=144.7
Q ss_pred CCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCC------CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 037256 344 KIDATLRNAVMDMYAKCGDLDTAENMFNDIHPS------ERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHIT 417 (680)
Q Consensus 344 ~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 417 (680)
+.....|-..|......+++++|++++++..+. +.-.-.|.++++.-...|.-+...++|++..+. .-....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 445667777777778888888888888877432 112446888887777778778888888888873 322346
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhhhc-CCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC--HhH----HHHHH
Q 037256 418 FTSILSACSHAGLIDEGRKCFADMTKL-SVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM-PLPPN--DSV----WGALL 489 (680)
Q Consensus 418 ~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~--~~~----~~~ll 489 (680)
|..|+..|.+.+.+++|.++++.|.+. + -....|...++.+.+...-+.|..++.+. ..-|. .+- +..|-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 778888888888888888888888886 4 66778888888888888888888888765 33333 111 11111
Q ss_pred HHHHHH--HHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 037256 490 LACRIH--GEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKGLK 543 (680)
Q Consensus 490 ~a~~~~--~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 543 (680)
-.|... |+..++-++.-.|.....|..++++-.+.|..+.++.+|++....++.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 111111 666888888889999999999999999999999999999999987764
No 121
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.14 E-value=4e-06 Score=53.47 Aligned_cols=35 Identities=43% Similarity=0.746 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 037256 381 SSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH 415 (680)
Q Consensus 381 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 415 (680)
.+||+||.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37899999999999999999999999999988873
No 122
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.13 E-value=0.00078 Score=62.89 Aligned_cols=157 Identities=16% Similarity=0.121 Sum_probs=123.6
Q ss_pred HHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCC-CCCHhHHHHHHHHHHhcC
Q 037256 316 LILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPS-ERNVSSWNVLIAGYGMHG 394 (680)
Q Consensus 316 ~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g 394 (680)
...-.++...|+-+....+...... ..+.|..+.+.++....+.|++..|...|++.... .+|...||.+..+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~-~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAI-AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhc-cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 4444455555555555555444322 22456677777899999999999999999998665 567899999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHH
Q 037256 395 HGRKALEFFSQMLEEGVKPDH-ITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMI 473 (680)
Q Consensus 395 ~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 473 (680)
++++|..-|.+..+ +.|+. ..++.+.-.+.-.|+.+.|..++......+ .-|..+-..+....+..|++++|.++.
T Consensus 149 r~~~Ar~ay~qAl~--L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 149 RFDEARRAYRQALE--LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ChhHHHHHHHHHHH--hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 99999999999998 67765 467788888888999999999999988764 346667777888899999999999988
Q ss_pred HhC
Q 037256 474 KQM 476 (680)
Q Consensus 474 ~~m 476 (680)
..-
T Consensus 226 ~~e 228 (257)
T COG5010 226 VQE 228 (257)
T ss_pred ccc
Confidence 654
No 123
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.11 E-value=0.026 Score=61.67 Aligned_cols=128 Identities=13% Similarity=0.167 Sum_probs=95.7
Q ss_pred CChHHHHHHhhhccCCCCCcchHHHHHHHH--HhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHH
Q 037256 56 GEPNTARSLFNSIHNDKSYSFLWNTMIRAY--ANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVH 133 (680)
Q Consensus 56 g~~~~A~~~f~~~~~~~p~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 133 (680)
+++..|.+...++..+.||. .|...+.++ .+.|+.++|..+++.....+.. |..|...+-..|...+..+++..++
T Consensus 23 ~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Y 100 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLY 100 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHH
Confidence 77778888888888888876 356666665 5789999999988887765544 7888888888899999999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCChH----HHHHHHhcCCCCChhHHHHHHHHHHh
Q 037256 134 GDIIRTGFLSDSYVQAALVDMYAKCGQTD----DGCKVFDEMSVRDLVSWTVMITAYEQ 188 (680)
Q Consensus 134 ~~~~~~g~~~~~~~~~~Li~~~~~~g~~~----~A~~~f~~~~~~~~~~~~~li~~~~~ 188 (680)
++..+. .|+......+..+|.+.+++. .|.+++...+.+--..|+ +++.+.+
T Consensus 101 e~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWs-V~Slilq 156 (932)
T KOG2053|consen 101 ERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWS-VISLILQ 156 (932)
T ss_pred HHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHH-HHHHHHH
Confidence 998876 456777777888888887764 477777766655444454 4444444
No 124
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.10 E-value=0.0003 Score=65.55 Aligned_cols=116 Identities=13% Similarity=0.147 Sum_probs=54.2
Q ss_pred CChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHH-HHHcCC--HHHHH
Q 037256 291 GQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDM-YAKCGD--LDTAE 367 (680)
Q Consensus 291 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~-y~k~g~--~~~A~ 367 (680)
++.++++..+++..+.. +.|...|..+...+...|+++.|...++...+.. +.+..++..+..+ |...|+ .++|.
T Consensus 53 ~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 53 QTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred hhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 34444444444444432 3344444444444445555555555554444443 2344444444443 234444 25555
Q ss_pred HHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 037256 368 NMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLE 408 (680)
Q Consensus 368 ~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 408 (680)
+++++.....| +...+..+...+.+.|++++|+..|+++.+
T Consensus 131 ~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 131 EMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55555533333 344445555555555555555555555554
No 125
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.08 E-value=0.0014 Score=73.34 Aligned_cols=150 Identities=11% Similarity=0.111 Sum_probs=99.7
Q ss_pred CHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHH
Q 037256 311 NPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGY 390 (680)
Q Consensus 311 ~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~ 390 (680)
+...+..+..+|.+.|..+++..+++.+++.. +.|+.+.|-+...|+.. ++++|.+++.+. +..|
T Consensus 115 ~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA-------------V~~~ 179 (906)
T PRK14720 115 NKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA-------------IYRF 179 (906)
T ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH-------------HHHH
Confidence 33456666667777777777777777777766 66778888888888888 888888888777 3346
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHccCCHHHHHHHHHHhhhc-CCCcChHHHHHHHHHHHhcCCHHH
Q 037256 391 GMHGHGRKALEFFSQMLEEGVKPDHITF-TSILSACSHAGLIDEGRKCFADMTKL-SVKPEVKHYACMVDMLGRAGCLYE 468 (680)
Q Consensus 391 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~ 468 (680)
...+++.++.++|.++.. ..|+.+.+ ..++ +.+... |..--+.++--+...|....++++
T Consensus 180 i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~----------------~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~ 241 (906)
T PRK14720 180 IKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIE----------------RKVLGHREFTRLVGLLEDLYEPYKALEDWDE 241 (906)
T ss_pred HhhhcchHHHHHHHHHHh--cCcccchHHHHHH----------------HHHHhhhccchhHHHHHHHHHHHhhhhhhhH
Confidence 777788889999998888 55665433 2222 222222 334444556666777888888888
Q ss_pred HHHHHHhC-CCCCC-HhHHHHHHHHHH
Q 037256 469 AFDMIKQM-PLPPN-DSVWGALLLACR 493 (680)
Q Consensus 469 A~~~~~~m-~~~p~-~~~~~~ll~a~~ 493 (680)
+.++++.+ ...|+ .....-+...++
T Consensus 242 ~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 242 VIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 88888876 44443 334444444444
No 126
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.05 E-value=7.2e-06 Score=52.25 Aligned_cols=35 Identities=31% Similarity=0.554 Sum_probs=31.8
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCc
Q 037256 76 FLWNTMIRAYANNGHCVETLELYSTMRRSGISSNS 110 (680)
Q Consensus 76 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 110 (680)
++||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999874
No 127
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.04 E-value=0.0076 Score=58.29 Aligned_cols=318 Identities=12% Similarity=0.079 Sum_probs=191.2
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHH---HHHhccCChHHHHHHHHHHHHhCCCCchhHH-HHHH
Q 037256 77 LWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVL---KACASNSLILEGKVVHGDIIRTGFLSDSYVQ-AALV 152 (680)
Q Consensus 77 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll---~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~Li 152 (680)
-.--+...+.-.|++..|+.-|....+. |+..|.++. ..|...|+-..|..=+..+++. .||-... -.-.
T Consensus 40 khlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg 113 (504)
T KOG0624|consen 40 KHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence 3445777888889999999999988764 333444443 4566778878888888887775 4553221 1122
Q ss_pred HHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHH
Q 037256 153 DMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQA 232 (680)
Q Consensus 153 ~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 232 (680)
..+.+.|.++.|..-|+.+.+.++. -+....++.+.- +.+++. .....+..+...|+...+..
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s-~~~~~eaqskl~-------~~~e~~---------~l~~ql~s~~~~GD~~~ai~ 176 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPS-NGLVLEAQSKLA-------LIQEHW---------VLVQQLKSASGSGDCQNAIE 176 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCC-cchhHHHHHHHH-------hHHHHH---------HHHHHHHHHhcCCchhhHHH
Confidence 3456788888888888776543221 001111111111 111111 12233444556677777777
Q ss_pred HHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC
Q 037256 233 VHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMME---KRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCK 309 (680)
Q Consensus 233 ~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 309 (680)
....+++.. +-|...+..-..+|...|+...|+.-+.... ..++...--+-..+-..|+.+.++...++-.+ +.
T Consensus 177 ~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ld 253 (504)
T KOG0624|consen 177 MITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LD 253 (504)
T ss_pred HHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cC
Confidence 777776653 5577777777788888888888876555443 34566666666677778888888888777765 35
Q ss_pred CCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCC--Hh---HHH
Q 037256 310 PNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERN--VS---SWN 384 (680)
Q Consensus 310 p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~--~~---~~~ 384 (680)
||....... | ..+.+....+..|. .....+++.++.+..+...+.+|. .+ .+.
T Consensus 254 pdHK~Cf~~---Y---KklkKv~K~les~e----------------~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r 311 (504)
T KOG0624|consen 254 PDHKLCFPF---Y---KKLKKVVKSLESAE----------------QAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFR 311 (504)
T ss_pred cchhhHHHH---H---HHHHHHHHHHHHHH----------------HHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeh
Confidence 665432111 1 11111111111111 122345566666666655444444 22 334
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhhhc
Q 037256 385 VLIAGYGMHGHGRKALEFFSQMLEEGVKPDH-ITFTSILSACSHAGLIDEGRKCFADMTKL 444 (680)
Q Consensus 385 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 444 (680)
.+-.+|...|++.+|++.-.+.++ +.||. .++.--..+|.-...++.|+.-|+...+.
T Consensus 312 ~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 312 VLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred eeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 455667777888888888888887 67774 47777777888888888888888877764
No 128
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.01 E-value=0.0017 Score=65.98 Aligned_cols=202 Identities=12% Similarity=0.022 Sum_probs=131.4
Q ss_pred CHHHHHHHHHhcCC------CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHH
Q 037256 261 NVEKARLVFDMMEK------RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKF 334 (680)
Q Consensus 261 ~~~~A~~~f~~m~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i 334 (680)
++.+++..-+.++. ++.......+.+.........+..++. +... ..-...-|...+ .....|.++.|+..
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~-~~~~-~~~~aa~YG~A~-~~~~~~~~d~A~~~ 328 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLA-KRSK-RGGLAAQYGRAL-QTYLAGQYDEALKL 328 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHH-HHhC-ccchHHHHHHHH-HHHHhcccchHHHH
Confidence 45555656666653 244445555554433333233322222 2221 011222233322 23456778888888
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 037256 335 HGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERN-VSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKP 413 (680)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 413 (680)
+..+++.- +.|+.......+.+.+.++..+|.+.|+++....|+ ...+-.+..+|.+.|++.+|+.++++.... .+-
T Consensus 329 l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~-~p~ 406 (484)
T COG4783 329 LQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN-DPE 406 (484)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc-CCC
Confidence 88776653 567777778888889999999999999888777776 566777788888889999999888888775 344
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHhHH
Q 037256 414 DHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM--PLPPNDSVW 485 (680)
Q Consensus 414 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~ 485 (680)
|...|..|..+|...|+..++..... +.|...|++++|..+.... ..+++...|
T Consensus 407 dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~A~~~l~~A~~~~~~~~~~~ 462 (484)
T COG4783 407 DPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQAIIFLMRASQQVKLGFPDW 462 (484)
T ss_pred CchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHHHHHHHHHHHHhccCCcHHH
Confidence 66788888889998888877766543 4566788888888887765 344555555
No 129
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.01 E-value=0.00029 Score=65.63 Aligned_cols=146 Identities=10% Similarity=0.013 Sum_probs=101.5
Q ss_pred CChHHHHHHhhhccCCCC-CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHH
Q 037256 56 GEPNTARSLFNSIHNDKS-YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHG 134 (680)
Q Consensus 56 g~~~~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 134 (680)
|+-+++..+........| |....+..+....++|++.+|+..|++..+.. ++|..+|+.+--+|.+.|+++.|+.-|.
T Consensus 80 G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~Ar~ay~ 158 (257)
T COG5010 80 GDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEARRAYR 158 (257)
T ss_pred ccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHHHHHHH
Confidence 666666666665544444 44455667777778888888888888877643 4577778888888888888888888888
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHhCCCccHHHHHHHHHH
Q 037256 135 DIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMS---VRDLVSWTVMITAYEQAEKPEEALILFQKTQ 203 (680)
Q Consensus 135 ~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 203 (680)
+.++.. .-++...|.|.-.|.-.|+.+.|..++.... ..|...-..+.......|++++|.++-..-.
T Consensus 159 qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 159 QALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 777764 4456666777777777788888887776543 2356666667777777777777777665443
No 130
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.01 E-value=0.00015 Score=63.87 Aligned_cols=68 Identities=13% Similarity=0.044 Sum_probs=35.4
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 037256 346 DATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH 415 (680)
Q Consensus 346 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 415 (680)
+...+..+..++.+.|++++|...|++.....| +...|..+..++...|+.++|...|++..+ +.|+.
T Consensus 57 ~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~--~~p~~ 125 (144)
T PRK15359 57 SWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK--MSYAD 125 (144)
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCC
Confidence 344444455555555555555555555533333 344555555555555666666666665555 44444
No 131
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.98 E-value=0.00027 Score=72.33 Aligned_cols=129 Identities=13% Similarity=0.163 Sum_probs=103.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 037256 347 ATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKP-DHITFTSILSAC 425 (680)
Q Consensus 347 ~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~ 425 (680)
-....+|+..+...++++.|.++|+++....|++ +..|+..+...++-.+|++++++..+. .| +......-...|
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRERDPEV--AVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFL 244 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 3444566777778899999999999996556654 445778888888999999999999974 45 444555556678
Q ss_pred HccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 037256 426 SHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPP 480 (680)
Q Consensus 426 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 480 (680)
.+.++++.|+.+.+++.+.. +-+..+|..|..+|.+.|++++|+..++.+|+-|
T Consensus 245 l~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 89999999999999999753 4456799999999999999999999999998654
No 132
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.97 E-value=1.3e-05 Score=50.74 Aligned_cols=33 Identities=36% Similarity=0.668 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 037256 381 SSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKP 413 (680)
Q Consensus 381 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 413 (680)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 577888888888888888888888888877776
No 133
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.95 E-value=0.0023 Score=71.69 Aligned_cols=150 Identities=14% Similarity=0.164 Sum_probs=84.1
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcC
Q 037256 212 VTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNG 291 (680)
Q Consensus 212 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g 291 (680)
..+..+..+|.+.|+.+++..+++.+++.. +.|+.+.|.+...|+.. ++++|++.+.+. +..|...+
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA-----------V~~~i~~k 183 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA-----------IYRFIKKK 183 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH-----------HHHHHhhh
Confidence 345555555556666666666666666555 45566666676777666 777776665543 22356666
Q ss_pred ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHc-CCCCchHHHHHHHHHHHHcCCHHHHHHHH
Q 037256 292 QASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINS-NMKIDATLRNAVMDMYAKCGDLDTAENMF 370 (680)
Q Consensus 292 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~-~~~~~~~~~~~li~~y~k~g~~~~A~~~f 370 (680)
++.++.+++.++... .|+.+.+ -.++.+.+... |...-+.++-.+-..|-+.++++++..+|
T Consensus 184 q~~~~~e~W~k~~~~--~~~d~d~---------------f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iL 246 (906)
T PRK14720 184 QYVGIEEIWSKLVHY--NSDDFDF---------------FLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYIL 246 (906)
T ss_pred cchHHHHHHHHHHhc--CcccchH---------------HHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 777777777777764 3332222 11112222211 22333444555566667777777777777
Q ss_pred hhcCCCC-CCHhHHHHHHHHHH
Q 037256 371 NDIHPSE-RNVSSWNVLIAGYG 391 (680)
Q Consensus 371 ~~~~~~~-~~~~~~~~li~~~~ 391 (680)
..+.+.+ .|.....-++..|.
T Consensus 247 K~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 247 KKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHhcCCcchhhHHHHHHHHH
Confidence 7775543 34555566666654
No 134
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.92 E-value=0.0011 Score=73.34 Aligned_cols=128 Identities=9% Similarity=0.021 Sum_probs=93.9
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHH
Q 037256 378 RNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHI-TFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACM 456 (680)
Q Consensus 378 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 456 (680)
.++..+-.|.....+.|++++|..+++...+ +.||.. ....+...+.+.+++++|....++..... +-+......+
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~ 160 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLE 160 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 3577788888888899999999999999998 788876 67777888999999999999999988764 4456677788
Q ss_pred HHHHHhcCCHHHHHHHHHhCC-CCCC-HhHHHHHHHHHHHH-----HHHHHHHHHccCC
Q 037256 457 VDMLGRAGCLYEAFDMIKQMP-LPPN-DSVWGALLLACRIH-----GEIAANYLFQLEP 508 (680)
Q Consensus 457 i~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~a~~~~-----~~~~~~~~~~l~p 508 (680)
..++.+.|++++|.++|++.- -.|+ ...|.++-.+.... |..+++++++...
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG 219 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence 888999999999999998872 2222 33444443333332 4444555555443
No 135
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.91 E-value=1.7e-05 Score=50.09 Aligned_cols=34 Identities=26% Similarity=0.548 Sum_probs=29.2
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCC
Q 037256 75 SFLWNTMIRAYANNGHCVETLELYSTMRRSGISS 108 (680)
Q Consensus 75 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 108 (680)
+.+||.+|.+|++.|+++.|.++|+.|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3578899999999999999999999998888877
No 136
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.89 E-value=0.0027 Score=70.40 Aligned_cols=142 Identities=9% Similarity=0.092 Sum_probs=81.8
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH-hhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHH
Q 037256 276 DLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNP-VTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVM 354 (680)
Q Consensus 276 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li 354 (680)
++..+-.|.....+.|.+++|..+++...+. .||. .....+..++.+.+.+++|....+...+.. +.+....+.+.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a 161 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEA 161 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHH
Confidence 4556666666667777777777777776653 4443 344455555666666666666666665554 33445555555
Q ss_pred HHHHHcCCHHHHHHHHhhcCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 037256 355 DMYAKCGDLDTAENMFNDIHPSERN-VSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSI 421 (680)
Q Consensus 355 ~~y~k~g~~~~A~~~f~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 421 (680)
.++.+.|++++|..+|+++....|+ ..+|..+..++...|+.++|...|++..+. ..|....|+..
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~ 228 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRR 228 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHH
Confidence 6666666666666666666433333 455555566666666666666666666553 23333444433
No 137
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.86 E-value=0.003 Score=64.23 Aligned_cols=161 Identities=15% Similarity=0.108 Sum_probs=103.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHH
Q 037256 280 WNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAK 359 (680)
Q Consensus 280 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k 359 (680)
+.-..-.+...|.+++|+..++.+... .+-|..-.......+...++..+|.+.++.+.... +....+.-.+..+|.+
T Consensus 309 ~YG~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~ 386 (484)
T COG4783 309 QYGRALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLK 386 (484)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHh
Confidence 333344455667777777777777654 13334444455566677777777777777777654 2225666667788888
Q ss_pred cCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 037256 360 CGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCF 438 (680)
Q Consensus 360 ~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 438 (680)
.|++.+|.+++++.....| |+..|..|..+|...|+..+|..-..++.. ..|++++|...+
T Consensus 387 ~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~------------------~~G~~~~A~~~l 448 (484)
T COG4783 387 GGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA------------------LAGRLEQAIIFL 448 (484)
T ss_pred cCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH------------------hCCCHHHHHHHH
Confidence 8888888888877744433 577788888888888888777776666532 356777777777
Q ss_pred HHhhhc--CCCcChHHHHHHHHHH
Q 037256 439 ADMTKL--SVKPEVKHYACMVDML 460 (680)
Q Consensus 439 ~~m~~~--~~~p~~~~~~~li~~~ 460 (680)
....+. ...|+..-+...|+..
T Consensus 449 ~~A~~~~~~~~~~~aR~dari~~~ 472 (484)
T COG4783 449 MRASQQVKLGFPDWARADARIDQL 472 (484)
T ss_pred HHHHHhccCCcHHHHHHHHHHHHH
Confidence 666665 2244444444545443
No 138
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.84 E-value=0.00024 Score=61.98 Aligned_cols=109 Identities=12% Similarity=0.086 Sum_probs=77.9
Q ss_pred HHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 037256 402 FFSQMLEEGVKPDHI-TFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPP 480 (680)
Q Consensus 402 l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 480 (680)
++++..+ ..|+.. ....+...+...|++++|.+.|+.+...+ +.+...+..+...|.+.|++++|...+++.
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~---- 77 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALA---- 77 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 3444544 455443 44555566777788888888887776653 445667777777777777777777766543
Q ss_pred CHhHHHHHHHHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 037256 481 NDSVWGALLLACRIHGEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNK 540 (680)
Q Consensus 481 ~~~~~~~ll~a~~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 540 (680)
+++.|+++..+..++.+|...|++++|.+.++...+.
T Consensus 78 -----------------------~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 78 -----------------------AALDPDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred -----------------------HhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3456778888889999999999999999999888764
No 139
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.78 E-value=0.00043 Score=70.87 Aligned_cols=121 Identities=12% Similarity=0.160 Sum_probs=75.3
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 037256 78 WNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAK 157 (680)
Q Consensus 78 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~ 157 (680)
-.+|+..+...++++.|+.+|+++.+.. |+ ....+++.+...++-.+|.+++.+.++.. +.+......-...+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 3445555555667777777777776653 33 33445566655666666666666666543 3445555555566667
Q ss_pred cCChHHHHHHHhcCCC--C-ChhHHHHHHHHHHhCCCccHHHHHHHHHH
Q 037256 158 CGQTDDGCKVFDEMSV--R-DLVSWTVMITAYEQAEKPEEALILFQKTQ 203 (680)
Q Consensus 158 ~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 203 (680)
.++.+.|+++.++... | +..+|..|..+|.+.|++++|+..++.+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 7777777777766642 3 44477777777777777777777766654
No 140
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.76 E-value=0.00078 Score=58.72 Aligned_cols=62 Identities=8% Similarity=0.025 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 037256 347 ATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLE 408 (680)
Q Consensus 347 ~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 408 (680)
...+..+...|.+.|++++|...|+......| +...|..+...|...|++++|+..|++..+
T Consensus 51 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 51 SRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33334444444444444444444444322222 233344444444444444444444444444
No 141
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.73 E-value=0.017 Score=54.22 Aligned_cols=84 Identities=11% Similarity=0.201 Sum_probs=37.6
Q ss_pred HhcCCHHHHHHHHHhcCCC-ChhHHHHHHHHHH----HcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHH
Q 037256 257 ARCGNVEKARLVFDMMEKR-DLISWNSMLTGYI----QNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLG 331 (680)
Q Consensus 257 ~~~g~~~~A~~~f~~m~~~-~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 331 (680)
.|..+.+-|.+.++.|.+- +-.+.+-|..++. ..+...+|.-+|++|-+. .+|+..+.+....++...+++++|
T Consensus 148 lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeA 226 (299)
T KOG3081|consen 148 LKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEA 226 (299)
T ss_pred HHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHH
Confidence 3444455555555555442 2222222322222 223355555555555432 345555555555455555555555
Q ss_pred HHHHHHHHHc
Q 037256 332 RKFHGYIINS 341 (680)
Q Consensus 332 ~~i~~~~~~~ 341 (680)
..+++.....
T Consensus 227 e~lL~eaL~k 236 (299)
T KOG3081|consen 227 ESLLEEALDK 236 (299)
T ss_pred HHHHHHHHhc
Confidence 5555444443
No 142
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.71 E-value=4.6e-05 Score=46.89 Aligned_cols=31 Identities=42% Similarity=0.704 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 037256 381 SSWNVLIAGYGMHGHGRKALEFFSQMLEEGV 411 (680)
Q Consensus 381 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 411 (680)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3677888888888888888888888777663
No 143
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.70 E-value=0.0011 Score=57.76 Aligned_cols=108 Identities=10% Similarity=-0.073 Sum_probs=72.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHHH------HHHHHHHHHccCCCCCchHHHHHHHHHhcCCh
Q 037256 455 CMVDMLGRAGCLYEAFDMIKQM-PLPPNDSVWGALLLACRIH------GEIAANYLFQLEPEHTGYFVLMSNIYAASNKW 527 (680)
Q Consensus 455 ~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~a~~~~------~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~ 527 (680)
.+...+...|++++|..+|+-. .+.|....+-.=|++|.+. |..+..++..++|+++..+..++..|...|+.
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNV 119 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCH
Confidence 3444455566666666666654 3344433322223333322 45556677789999999999999999999999
Q ss_pred hHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEeCCCCCcccHHHHHHHHHHHHHHH
Q 037256 528 REVGKLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIK 585 (680)
Q Consensus 528 ~~A~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~~~~l~~~m~ 585 (680)
+.|++.|+...... ..+|+..++.++++.+...+.
T Consensus 120 ~~A~~aF~~Ai~~~-----------------------~~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 120 CYAIKALKAVVRIC-----------------------GEVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HHHHHHHHHHHHHh-----------------------ccChhHHHHHHHHHHHHHHhh
Confidence 99999999887531 135677777777777766654
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.68 E-value=0.001 Score=58.78 Aligned_cols=123 Identities=13% Similarity=0.078 Sum_probs=88.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhcCCCCCCH----hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHH
Q 037256 350 RNAVMDMYAKCGDLDTAENMFNDIHPSERNV----SSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH--ITFTSILS 423 (680)
Q Consensus 350 ~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~ 423 (680)
|..++..+ ..++...+...++.+....|+. ...-.+...+...|++++|...|+........|+. .....+..
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 34444444 3778888888888875554543 23344556788899999999999999986533332 24455677
Q ss_pred HHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHh
Q 037256 424 ACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQ 475 (680)
Q Consensus 424 a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 475 (680)
.+...|++++|+..++...... .....+....+.|.+.|+.++|...|++
T Consensus 94 ~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 8889999999999997754333 3445677888999999999999998875
No 145
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.66 E-value=0.016 Score=54.32 Aligned_cols=109 Identities=12% Similarity=0.142 Sum_probs=58.5
Q ss_pred HHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHH----hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 037256 355 DMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYG----MHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGL 430 (680)
Q Consensus 355 ~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~----~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 430 (680)
..+.|..+++-|.+.+++|.+. .+..+.+.|..++. -.+...+|.-+|++|.++ ..|+..+.+....++...|+
T Consensus 145 qI~lk~~r~d~A~~~lk~mq~i-ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 145 QILLKMHRFDLAEKELKKMQQI-DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHcc-chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcC
Confidence 3344555666666666666222 12233333333332 234466666667666654 56666666666666667777
Q ss_pred HHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCH
Q 037256 431 IDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCL 466 (680)
Q Consensus 431 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 466 (680)
+++|..+++....+. ..++.+...+|..-...|..
T Consensus 223 ~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 223 YEEAESLLEEALDKD-AKDPETLANLIVLALHLGKD 257 (299)
T ss_pred HHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCC
Confidence 777777766666552 23344444444444444443
No 146
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.62 E-value=0.043 Score=51.21 Aligned_cols=183 Identities=13% Similarity=0.122 Sum_probs=98.0
Q ss_pred cCChhHHHHHHHHHHh---CC-CCCCHhh-HHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHH
Q 037256 290 NGQASEALLLFDEMQN---SD-CKPNPVT-ALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLD 364 (680)
Q Consensus 290 ~g~~~~A~~~~~~m~~---~g-~~p~~~t-~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~ 364 (680)
..+.++.++++.++.. .| ..++..+ |--++-+....|+.+.|...++.+.+.- +.+..+...-.-.+-..|.++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 3456677777766653 23 4455543 3344445555666666666666655443 333333333333344556677
Q ss_pred HHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhh
Q 037256 365 TAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTK 443 (680)
Q Consensus 365 ~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 443 (680)
+|.++++.+.+..| |.+++--=+...-..|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++.-
T Consensus 104 ~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred hHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 77777776654444 3445544444445556666666666666654 455666666666666666777777666666664
Q ss_pred cCCCcChHHHHHHHHHHHhcC---CHHHHHHHHHh
Q 037256 444 LSVKPEVKHYACMVDMLGRAG---CLYEAFDMIKQ 475 (680)
Q Consensus 444 ~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~ 475 (680)
.. +.+...+..+.+.+.-.| +++-|.+++.+
T Consensus 183 ~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~ 216 (289)
T KOG3060|consen 183 IQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYER 216 (289)
T ss_pred cC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 32 222333344444443332 23334444444
No 147
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.61 E-value=6.6e-05 Score=46.17 Aligned_cols=31 Identities=35% Similarity=0.712 Sum_probs=25.2
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHHHhCCC
Q 037256 76 FLWNTMIRAYANNGHCVETLELYSTMRRSGI 106 (680)
Q Consensus 76 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 106 (680)
++||.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4688888888888888888888888887763
No 148
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.53 E-value=0.0055 Score=54.07 Aligned_cols=115 Identities=15% Similarity=0.126 Sum_probs=48.1
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHh---hHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCc--hHHHHHHHHHHHHcCCHH
Q 037256 290 NGQASEALLLFDEMQNSDCKPNPV---TALILVSACTYLGSRQLGRKFHGYIINSNMKID--ATLRNAVMDMYAKCGDLD 364 (680)
Q Consensus 290 ~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~--~~~~~~li~~y~k~g~~~ 364 (680)
.++...+...++.+.... +.+.. ....+...+...|++++|...++.+......++ ......|...+...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 555555555555555432 11111 111122333344444444444444444331111 112223344445555555
Q ss_pred HHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHH
Q 037256 365 TAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQ 405 (680)
Q Consensus 365 ~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 405 (680)
+|...++...........+......|...|+.++|...|++
T Consensus 103 ~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 103 EALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55555544422222333444444455555555555555543
No 149
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.44 E-value=0.16 Score=50.96 Aligned_cols=108 Identities=20% Similarity=0.274 Sum_probs=84.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcch
Q 037256 249 QNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSR 328 (680)
Q Consensus 249 ~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 328 (680)
.+.-|.-+...|+...|.++-.+..-||-.-|-..+.+++..++|++-.++-.. +-.++.|-.++.+|...|..
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 344566677889999999999999889999999999999999999987765432 22347888899999999998
Q ss_pred HHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhh
Q 037256 329 QLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFND 372 (680)
Q Consensus 329 ~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~ 372 (680)
.+|..+...+ + +..-+.+|.++|++.+|.+.--+
T Consensus 254 ~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 254 KEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHHH
Confidence 8888776652 1 25567889999999988776443
No 150
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.35 E-value=0.0039 Score=52.70 Aligned_cols=89 Identities=15% Similarity=0.148 Sum_probs=37.8
Q ss_pred HHHHHHHcCCHHHHHHHHhhcCCCCCC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHH
Q 037256 353 VMDMYAKCGDLDTAENMFNDIHPSERN----VSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPD----HITFTSILSA 424 (680)
Q Consensus 353 li~~y~k~g~~~~A~~~f~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a 424 (680)
+...+.+.|++++|.+.|+.+....|+ ...+..+...+.+.|++++|...|+++... .|+ ...+..+..+
T Consensus 8 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 8 AALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK--YPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH--CCCCCcccHHHHHHHHH
Confidence 334444444555554444444222222 123333444444445555555555544442 122 1233333344
Q ss_pred HHccCCHHHHHHHHHHhhh
Q 037256 425 CSHAGLIDEGRKCFADMTK 443 (680)
Q Consensus 425 ~~~~g~~~~a~~~~~~m~~ 443 (680)
+.+.|+.++|...++++.+
T Consensus 86 ~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHhCChHHHHHHHHHHHH
Confidence 4444455555555444444
No 151
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.34 E-value=0.0072 Score=59.87 Aligned_cols=141 Identities=12% Similarity=0.118 Sum_probs=85.1
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHH-HhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHH
Q 037256 278 ISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSA-CTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDM 356 (680)
Q Consensus 278 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~ 356 (680)
.+|..++...-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. ++.+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 356666666666666777777777776432 2222223222222 22245566677777777665 45677778888888
Q ss_pred HHHcCCHHHHHHHHhhcCCCCCCHh----HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037256 357 YAKCGDLDTAENMFNDIHPSERNVS----SWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSIL 422 (680)
Q Consensus 357 y~k~g~~~~A~~~f~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 422 (680)
+.+.++.+.|..+|++....-+... .|...+.-=.+.|+.+.+.++.+++.+ .-|+...+..++
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~--~~~~~~~~~~f~ 147 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE--LFPEDNSLELFS 147 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH--HTTTS-HHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HhhhhhHHHHHH
Confidence 8888888888888888755544333 677777777777777777777777777 345533333333
No 152
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.32 E-value=0.0028 Score=50.44 Aligned_cols=89 Identities=21% Similarity=0.241 Sum_probs=43.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHh
Q 037256 384 NVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH-ITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGR 462 (680)
Q Consensus 384 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 462 (680)
..+...+...|++++|...+++..+. .|+. ..+..+...+...+++++|.+.++...+.. +.+...+..+...+..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 33444445555555555555555442 2222 334444445555555555555555554432 2222344455555555
Q ss_pred cCCHHHHHHHHHh
Q 037256 463 AGCLYEAFDMIKQ 475 (680)
Q Consensus 463 ~g~~~~A~~~~~~ 475 (680)
.|+.++|...+++
T Consensus 81 ~~~~~~a~~~~~~ 93 (100)
T cd00189 81 LGKYEEALEAYEK 93 (100)
T ss_pred HHhHHHHHHHHHH
Confidence 5555555555544
No 153
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.27 E-value=0.25 Score=49.56 Aligned_cols=111 Identities=17% Similarity=0.181 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 037256 349 LRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHA 428 (680)
Q Consensus 349 ~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 428 (680)
+.+..+.-+...|+...|.++-.+. .-|+-.-|-..+.+|+..+++++-.++... +-.++-|-.++.+|...
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F--kv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF--KVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKY 250 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHC
Confidence 3344456667789999999999888 788999999999999999999877765432 22347788899999999
Q ss_pred CCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 037256 429 GLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMP 477 (680)
Q Consensus 429 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 477 (680)
|...+|..+...+. +..-+.+|.++|++.+|.+.--+.+
T Consensus 251 ~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 251 GNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred CCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 99999999887732 2456788999999999988766653
No 154
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.26 E-value=0.0006 Score=53.70 Aligned_cols=81 Identities=16% Similarity=0.254 Sum_probs=42.7
Q ss_pred cCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHH
Q 037256 393 HGHGRKALEFFSQMLEEGVK-PDHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFD 471 (680)
Q Consensus 393 ~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 471 (680)
.|++++|+.+++++.+.... |+...+..+..++.+.|++++|..+++. .+.+. .+....-.+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 46666777777777664221 1233344456666666777777666666 22211 122223344566666666666666
Q ss_pred HHHh
Q 037256 472 MIKQ 475 (680)
Q Consensus 472 ~~~~ 475 (680)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6653
No 155
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.26 E-value=0.0081 Score=55.98 Aligned_cols=181 Identities=11% Similarity=0.007 Sum_probs=124.3
Q ss_pred HHHHHHhh--hhhhHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCCCCCcchH--------HHHHHHHHhCCCchHHH
Q 037256 26 RQIHSSLT--TSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKSYSFLW--------NTMIRAYANNGHCVETL 95 (680)
Q Consensus 26 ~~~h~~~~--~~~~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~~p~~~~~--------~~li~~~~~~g~~~~A~ 95 (680)
|-+|+.++ .++-+++|+..|.- . .-+++-...|+.-......+..| +.++..+.-.|.+.-.+
T Consensus 125 R~lhAe~~~~lgnpqesLdRl~~L-~------~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~ 197 (366)
T KOG2796|consen 125 RILHAELQQYLGNPQESLDRLHKL-K------TVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSV 197 (366)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHH-H------HHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhH
Confidence 88898888 77788999988887 5 55666666665443322133333 56667777778888888
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHH-----HHHHHHHHhcCChHHHHHHHhc
Q 037256 96 ELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQ-----AALVDMYAKCGQTDDGCKVFDE 170 (680)
Q Consensus 96 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-----~~Li~~~~~~g~~~~A~~~f~~ 170 (680)
.++.+.++...+.++.....|.+...+.||.+.|...|+...+..-..|.... ...-..|.-.+++.+|...|++
T Consensus 198 d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~ 277 (366)
T KOG2796|consen 198 DAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTE 277 (366)
T ss_pred HHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhh
Confidence 89998888765666777777777778889999999999977665333333333 3334456667888888888988
Q ss_pred CCCC---ChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHH
Q 037256 171 MSVR---DLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIV 215 (680)
Q Consensus 171 ~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 215 (680)
++.. |++.-|.-.-+..-.|+...|++..+.|.+. .|...+-.
T Consensus 278 i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 278 ILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred ccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 8754 4555555444455568888899998888875 34444433
No 156
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.24 E-value=0.0051 Score=48.90 Aligned_cols=27 Identities=19% Similarity=0.197 Sum_probs=15.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhC
Q 037256 280 WNSMLTGYIQNGQASEALLLFDEMQNS 306 (680)
Q Consensus 280 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 306 (680)
|..+...+...|++++|...|++..+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~ 29 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL 29 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 334445555566666666666655543
No 157
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.22 E-value=0.52 Score=52.03 Aligned_cols=185 Identities=11% Similarity=0.068 Sum_probs=127.6
Q ss_pred CChHHHHHHhhhccCCCC-CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHH
Q 037256 56 GEPNTARSLFNSIHNDKS-YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHG 134 (680)
Q Consensus 56 g~~~~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 134 (680)
|+.++|..+++......| |..+...+-..|...|+.++|..+|++.... .|+..-...+..++.+.+++.+-.++--
T Consensus 57 gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~ 134 (932)
T KOG2053|consen 57 GKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAAL 134 (932)
T ss_pred cCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988876655 7778899999999999999999999999864 5778888888999999988877666655
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCC----------hHHHHHHHhcCCCCC--hhH---HHHHHHHHHhCCCccHHHHHH
Q 037256 135 DIIRTGFLSDSYVQAALVDMYAKCGQ----------TDDGCKVFDEMSVRD--LVS---WTVMITAYEQAEKPEEALILF 199 (680)
Q Consensus 135 ~~~~~g~~~~~~~~~~Li~~~~~~g~----------~~~A~~~f~~~~~~~--~~~---~~~li~~~~~~g~~~~A~~~~ 199 (680)
++-+. ++..++.+=++++.+...-. +.-|.+.++.+.+.+ ..+ .-.-...+-..|++++|++++
T Consensus 135 ~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l 213 (932)
T KOG2053|consen 135 QLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFL 213 (932)
T ss_pred HHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHH
Confidence 55553 35556655556666554311 234556666655433 111 111122344568899999998
Q ss_pred -HHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCC
Q 037256 200 -QKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFL 243 (680)
Q Consensus 200 -~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 243 (680)
....+.-...+...-+--+..+...+++.+..++-.+++..|.+
T Consensus 214 ~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D 258 (932)
T KOG2053|consen 214 AITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND 258 (932)
T ss_pred HHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc
Confidence 44444433444444455666777778888888888888877643
No 158
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.20 E-value=0.28 Score=48.75 Aligned_cols=93 Identities=13% Similarity=0.123 Sum_probs=55.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCC-----CCHH-HHHHHHHHHHccCCHHHHHHHHHHhhhc--CCCcC--hHHH
Q 037256 384 NVLIAGYGMHGHGRKALEFFSQMLEEGVK-----PDHI-TFTSILSACSHAGLIDEGRKCFADMTKL--SVKPE--VKHY 453 (680)
Q Consensus 384 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~-----p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~--~~~p~--~~~~ 453 (680)
..+...+.+.|++++|+++|++....-.. ++.. .|...+-.+...|++..|.+.|++.... ++..+ ....
T Consensus 159 ~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~ 238 (282)
T PF14938_consen 159 LKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFL 238 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHH
Confidence 33456677778888888888777664322 2222 2333344566678888888888887654 44444 3345
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHhC
Q 037256 454 ACMVDMLGR--AGCLYEAFDMIKQM 476 (680)
Q Consensus 454 ~~li~~~~~--~g~~~~A~~~~~~m 476 (680)
..|++++-. ...+++|+.-|+.+
T Consensus 239 ~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 239 EDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHHhCCHHHHHHHHHHHccc
Confidence 566666643 45677777777776
No 159
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.19 E-value=0.001 Score=52.31 Aligned_cols=78 Identities=17% Similarity=0.248 Sum_probs=59.5
Q ss_pred cCCHHHHHHHHhhcCCCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHH
Q 037256 360 CGDLDTAENMFNDIHPSER---NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH-ITFTSILSACSHAGLIDEGR 435 (680)
Q Consensus 360 ~g~~~~A~~~f~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~ 435 (680)
.|+++.|..+|+++....| +...|-.+..+|.+.|++++|+.++++ .. ..|.. .....+..+|...|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 5889999999999855555 345566689999999999999999998 32 34444 34445577899999999999
Q ss_pred HHHHH
Q 037256 436 KCFAD 440 (680)
Q Consensus 436 ~~~~~ 440 (680)
+++++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 99876
No 160
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.14 E-value=0.01 Score=50.05 Aligned_cols=93 Identities=15% Similarity=0.066 Sum_probs=74.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHhhhc--CCCcChHHHHH
Q 037256 382 SWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH----ITFTSILSACSHAGLIDEGRKCFADMTKL--SVKPEVKHYAC 455 (680)
Q Consensus 382 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~ 455 (680)
++......+.+.|++++|.+.|.++.+. .|+. ..+..+..++...|++++|...|+.+... +.+.....+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKK--YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4566777888999999999999999874 3442 35666788899999999999999998875 22223566778
Q ss_pred HHHHHHhcCCHHHHHHHHHhC
Q 037256 456 MVDMLGRAGCLYEAFDMIKQM 476 (680)
Q Consensus 456 li~~~~~~g~~~~A~~~~~~m 476 (680)
+..++.+.|+.++|.+.++++
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~ 102 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQV 102 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHH
Confidence 888999999999999999876
No 161
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.13 E-value=0.00035 Score=43.78 Aligned_cols=33 Identities=15% Similarity=0.318 Sum_probs=30.5
Q ss_pred HHHHHccCCCCCchHHHHHHHHHhcCChhHHHH
Q 037256 500 ANYLFQLEPEHTGYFVLMSNIYAASNKWREVGK 532 (680)
Q Consensus 500 ~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~ 532 (680)
++++++++|+|+.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 468899999999999999999999999999863
No 162
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.10 E-value=0.006 Score=58.27 Aligned_cols=97 Identities=16% Similarity=0.218 Sum_probs=70.2
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHH
Q 037256 390 YGMHGHGRKALEFFSQMLEEGVKPDH-ITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYE 468 (680)
Q Consensus 390 ~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 468 (680)
+.+.+++.+|+..|.+.++ +.|+. +-|..=..+|++.|.++.|++-.+..+..+ +-....|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHH
Confidence 4567888888888888888 66644 556666778888888888888777776543 2335678888888888888888
Q ss_pred HHHHHHhC-CCCCCHhHHHHHH
Q 037256 469 AFDMIKQM-PLPPNDSVWGALL 489 (680)
Q Consensus 469 A~~~~~~m-~~~p~~~~~~~ll 489 (680)
|++.|++. .+.|+..+|..=|
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHH
Confidence 88887765 5666666554444
No 163
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.09 E-value=0.0091 Score=61.42 Aligned_cols=101 Identities=16% Similarity=0.169 Sum_probs=64.4
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHH
Q 037256 389 GYGMHGHGRKALEFFSQMLEEGVKPDH-ITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLY 467 (680)
Q Consensus 389 ~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 467 (680)
.+...|++++|+++|++.++ ..|+. ..|..+..++...|++++|+..++++.+.. +.+...|..+..+|...|+++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 34456777777777777776 34443 356666666777777777777777776653 334556666777777777777
Q ss_pred HHHHHHHhC-CCCCCHhHHHHHHHHH
Q 037256 468 EAFDMIKQM-PLPPNDSVWGALLLAC 492 (680)
Q Consensus 468 ~A~~~~~~m-~~~p~~~~~~~ll~a~ 492 (680)
+|+..|++. .+.|+.......+..|
T Consensus 88 eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 88 TAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 777777665 4555555544444444
No 164
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.08 E-value=0.024 Score=51.64 Aligned_cols=130 Identities=12% Similarity=0.074 Sum_probs=79.3
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHH
Q 037256 380 VSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPD--HITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMV 457 (680)
Q Consensus 380 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 457 (680)
...+..+...|...|++++|...|++..+....|+ ...+..+...+.+.|++++|...+++..+.. +-+...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 44566666777777888888888887776433322 2456666777778888888888888777642 22345555666
Q ss_pred HHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCC
Q 037256 458 DMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEIAANYLFQLEPEHTGYFVLMSNIYAASNK 526 (680)
Q Consensus 458 ~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~ 526 (680)
..|...|+...+..-++.. ..+...+...++++++++|++ |..+...+...|+
T Consensus 114 ~~~~~~g~~~~a~~~~~~A-------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEA-------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHcCChHhHhhCHHHH-------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 6777766655544322221 011223566677777888876 5555555555554
No 165
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.07 E-value=0.0055 Score=49.48 Aligned_cols=81 Identities=19% Similarity=0.162 Sum_probs=68.0
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHhCCC-CCCcccHHHHHHHHhccC--------ChHHHHHHHHHHHHhCCCCchhH
Q 037256 77 LWNTMIRAYANNGHCVETLELYSTMRRSGI-SSNSYTFPFVLKACASNS--------LILEGKVVHGDIIRTGFLSDSYV 147 (680)
Q Consensus 77 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~ 147 (680)
+-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-+...+++.|+..++.|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 344566777778999999999999999999 899999999999987653 23456788999999999999999
Q ss_pred HHHHHHHHHh
Q 037256 148 QAALVDMYAK 157 (680)
Q Consensus 148 ~~~Li~~~~~ 157 (680)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999887654
No 166
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.04 E-value=0.0058 Score=55.81 Aligned_cols=100 Identities=15% Similarity=0.245 Sum_probs=77.9
Q ss_pred HHHHhhcCCCCCCHhHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc-------------
Q 037256 367 ENMFNDIHPSERNVSSWNVLIAGYGMH-----GHGRKALEFFSQMLEEGVKPDHITFTSILSACSHA------------- 428 (680)
Q Consensus 367 ~~~f~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~------------- 428 (680)
...|+......+|-.+|..++..|.+. |..+=....++.|.+-|+.-|..+|+.||+.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 445555544566777777777777643 66777777888888999999999999998876542
Q ss_pred ---CCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCH
Q 037256 429 ---GLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCL 466 (680)
Q Consensus 429 ---g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 466 (680)
.+.+-|++++++|...|+.||.+++..+++.+++.+..
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 23467899999999999999999999999999887753
No 167
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.02 E-value=0.014 Score=47.20 Aligned_cols=79 Identities=11% Similarity=0.155 Sum_probs=64.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHccC--------CHHHHHHHHHHhhhcCCCcChHHHH
Q 037256 384 NVLIAGYGMHGHGRKALEFFSQMLEEGV-KPDHITFTSILSACSHAG--------LIDEGRKCFADMTKLSVKPEVKHYA 454 (680)
Q Consensus 384 ~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~g--------~~~~a~~~~~~m~~~~~~p~~~~~~ 454 (680)
...|..+...+++.....+|+.+++.|+ -|+..+|+.++.+.++.. ++-+.+.+++.|...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3456666667999999999999999999 899999999999876543 3456778888998889999999999
Q ss_pred HHHHHHHh
Q 037256 455 CMVDMLGR 462 (680)
Q Consensus 455 ~li~~~~~ 462 (680)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 88877654
No 168
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.01 E-value=0.015 Score=60.06 Aligned_cols=122 Identities=12% Similarity=0.051 Sum_probs=74.9
Q ss_pred CCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHc--CCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCC--CCCHhH
Q 037256 307 DCKPNPVTALILVSACTYLGSRQLGRKFHGYIINS--NMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPS--ERNVSS 382 (680)
Q Consensus 307 g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~--~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~--~~~~~~ 382 (680)
+.+.....+..++..+....+++.+..++-..... ....-..+..++|+.|.+.|..+++..+++.=..- -||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 33555666666666666666666666666555443 22222334456777777777777777766653221 467777
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 037256 383 WNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHA 428 (680)
Q Consensus 383 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 428 (680)
+|.||..+.+.|++..|.++..+|..++...+..|+.-.+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 7777777777777777777777776666666666666555555543
No 169
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=0.0081 Score=57.76 Aligned_cols=96 Identities=10% Similarity=0.045 Sum_probs=76.8
Q ss_pred CcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHHH--------HHHHHHHHHccCCCCCchHHH
Q 037256 447 KPEVKHYACMVDMLGRAGCLYEAFDMIKQM-PLPP-NDSVWGALLLACRIH--------GEIAANYLFQLEPEHTGYFVL 516 (680)
Q Consensus 447 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~~--------~~~~~~~~~~l~p~~~~~~~~ 516 (680)
+-|...|..|...|.+.|+++.|..-|.+. .+.| +...+..+-.++... ++..+++++.++|.|......
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 567788888888888888888888888776 4444 344454444444433 788899999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCC
Q 037256 517 MSNIYAASNKWREVGKLREDMKNKGL 542 (680)
Q Consensus 517 l~~~~~~~g~~~~A~~~~~~m~~~g~ 542 (680)
|+-.+...|++.+|...|+.|.+...
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 99999999999999999999998654
No 170
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.01 E-value=0.033 Score=50.51 Aligned_cols=95 Identities=11% Similarity=-0.016 Sum_probs=60.5
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHH
Q 037256 380 VSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPD--HITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMV 457 (680)
Q Consensus 380 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 457 (680)
...|..+...+...|++++|+..|++.......|. ..++..+...+...|++++|...++...+.. +.....+..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 44566666777777888888888877776422221 2366667777777888888888887777642 22334455555
Q ss_pred HHHH-------hcCCHHHHHHHHHh
Q 037256 458 DMLG-------RAGCLYEAFDMIKQ 475 (680)
Q Consensus 458 ~~~~-------~~g~~~~A~~~~~~ 475 (680)
..+. +.|++++|+..+++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHH
Confidence 5555 66777766655543
No 171
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.99 E-value=0.079 Score=55.72 Aligned_cols=232 Identities=14% Similarity=0.123 Sum_probs=113.6
Q ss_pred HHHHHHHHhccCChHHHHH--HHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHhCC
Q 037256 113 FPFVLKACASNSLILEGKV--VHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAE 190 (680)
Q Consensus 113 ~~~ll~~~~~~~~~~~a~~--~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 190 (680)
++..=++|.+.++..--+- -++++.+.|-.|+.... ...++-.|.+.+|.++|.+ +|
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~------------------~G 659 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKR------------------SG 659 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHH------------------cC
Confidence 4444555555555443332 24456677766776543 3456667899999888764 46
Q ss_pred CccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 037256 191 KPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFD 270 (680)
Q Consensus 191 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~ 270 (680)
.-..|+++|..|+-- ....-+...|+.++-+.+...-.+.. .++.--.+-..++...|+.++|..+.
T Consensus 660 ~enRAlEmyTDlRMF----------D~aQE~~~~g~~~eKKmL~RKRA~WA--r~~kePkaAAEmLiSaGe~~KAi~i~- 726 (1081)
T KOG1538|consen 660 HENRALEMYTDLRMF----------DYAQEFLGSGDPKEKKMLIRKRADWA--RNIKEPKAAAEMLISAGEHVKAIEIC- 726 (1081)
T ss_pred chhhHHHHHHHHHHH----------HHHHHHhhcCChHHHHHHHHHHHHHh--hhcCCcHHHHHHhhcccchhhhhhhh-
Confidence 667777777776532 12223334444444333322211110 00000112234444555555554432
Q ss_pred hcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHH
Q 037256 271 MMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLR 350 (680)
Q Consensus 271 ~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~ 350 (680)
..+|-.+-+.++-+++- ..+..+...+...+-+...+..|.++|..+-+.
T Consensus 727 -----------------~d~gW~d~lidI~rkld----~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~--------- 776 (1081)
T KOG1538|consen 727 -----------------GDHGWVDMLIDIARKLD----KAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL--------- 776 (1081)
T ss_pred -----------------hcccHHHHHHHHHhhcc----hhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------
Confidence 22333333333333322 122333334444444555566666666655322
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhH-----------HHHHHHHHHhcCChHHHHHHHHHHHH
Q 037256 351 NAVMDMYAKCGDLDTAENMFNDIHPSERNVSS-----------WNVLIAGYGMHGHGRKALEFFSQMLE 408 (680)
Q Consensus 351 ~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~-----------~~~li~~~~~~g~~~~A~~l~~~m~~ 408 (680)
.+++++....+++++|..+-++..+..+|+.. |.---.+|-+.|+-.+|..+++++..
T Consensus 777 ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 777 KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 34666777777788877777776333444321 11112234444555555555555543
No 172
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.99 E-value=0.0078 Score=54.66 Aligned_cols=94 Identities=17% Similarity=0.106 Sum_probs=66.4
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHH
Q 037256 346 DATLRNAVMDMYAKCGDLDTAENMFNDIHPSERN----VSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH-ITFTS 420 (680)
Q Consensus 346 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ 420 (680)
....+..+...+...|++++|...|++.....++ ..+|..+...|...|++++|++.+++... +.|+. .++..
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~--~~~~~~~~~~~ 111 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE--RNPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCcHHHHHH
Confidence 3455666777788889999999988887433332 34788888889999999999999988887 45543 35555
Q ss_pred HHHHHH-------ccCCHHHHHHHHHHh
Q 037256 421 ILSACS-------HAGLIDEGRKCFADM 441 (680)
Q Consensus 421 ll~a~~-------~~g~~~~a~~~~~~m 441 (680)
+...+. ..|++++|...+++.
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 555555 667777666555543
No 173
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.95 E-value=0.022 Score=49.65 Aligned_cols=92 Identities=10% Similarity=0.067 Sum_probs=72.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHcc
Q 037256 351 NAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH-ITFTSILSACSHA 428 (680)
Q Consensus 351 ~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~ 428 (680)
-++...+...|++++|.++|+.+....| +..-|-.|..++-..|++++|+..|..... +.||. ..+-.+..++...
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~--L~~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ--IKIDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHHHHHHHHc
Confidence 3445556778999999999988754454 466788888888889999999999998888 45554 5777777888889
Q ss_pred CCHHHHHHHHHHhhhc
Q 037256 429 GLIDEGRKCFADMTKL 444 (680)
Q Consensus 429 g~~~~a~~~~~~m~~~ 444 (680)
|+.+.|++.|+..+..
T Consensus 117 G~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 117 DNVCYAIKALKAVVRI 132 (157)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999888776
No 174
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.93 E-value=0.77 Score=49.12 Aligned_cols=201 Identities=11% Similarity=0.093 Sum_probs=114.8
Q ss_pred CCCcccHHHHHHHHhccCChHHHHHHHHHHHHh-CC--------CCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChh
Q 037256 107 SSNSYTFPFVLKACASNSLILEGKVVHGDIIRT-GF--------LSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVRDLV 177 (680)
Q Consensus 107 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g~--------~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~~~~~ 177 (680)
.|.+..|..+.......-.++.|+..|-+.... |+ -.+.....+=+.+| .|++++|++++-++..+|.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhhh-
Confidence 466677877777766666677777666433211 11 11111122222332 4899999999998888774
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCC----HhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHH
Q 037256 178 SWTVMITAYEQAEKPEEALILFQKTQQEGLLSD----SVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIV 253 (680)
Q Consensus 178 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li 253 (680)
.|..+.+.|++-...++++. -|-..| ...+..+...++....+++|.+.+.+--.. ..++
T Consensus 766 ----Aielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~ 829 (1189)
T KOG2041|consen 766 ----AIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQI 829 (1189)
T ss_pred ----hHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHH
Confidence 34556666777666555542 111111 234666666666666777777766543211 2356
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHH
Q 037256 254 AMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRK 333 (680)
Q Consensus 254 ~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 333 (680)
.+|.+..++++-+.+-+.+++.. ...-.|...+.+.|.-++|.+.|-+-- .| ...+.+|..++++.+|.+
T Consensus 830 ecly~le~f~~LE~la~~Lpe~s-~llp~~a~mf~svGMC~qAV~a~Lr~s----~p-----kaAv~tCv~LnQW~~ave 899 (1189)
T KOG2041|consen 830 ECLYRLELFGELEVLARTLPEDS-ELLPVMADMFTSVGMCDQAVEAYLRRS----LP-----KAAVHTCVELNQWGEAVE 899 (1189)
T ss_pred HHHHHHHhhhhHHHHHHhcCccc-chHHHHHHHHHhhchHHHHHHHHHhcc----Cc-----HHHHHHHHHHHHHHHHHH
Confidence 66666666666666666665532 334556677777777777777654321 11 133455666666666655
Q ss_pred HHH
Q 037256 334 FHG 336 (680)
Q Consensus 334 i~~ 336 (680)
+-+
T Consensus 900 laq 902 (1189)
T KOG2041|consen 900 LAQ 902 (1189)
T ss_pred HHH
Confidence 543
No 175
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.93 E-value=0.011 Score=58.64 Aligned_cols=127 Identities=13% Similarity=0.166 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHH-HHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 037256 349 LRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAG-YGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACS 426 (680)
Q Consensus 349 ~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~-~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 426 (680)
+|..++...-+.+.++.|+.+|.+.....+ +...|-..... |...++.+.|.++|+...+. +..+...|...+.-+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence 444455555555555555555555532211 12222222222 22234444466666665553 3334444555555555
Q ss_pred ccCCHHHHHHHHHHhhhc-CCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256 427 HAGLIDEGRKCFADMTKL-SVKP-EVKHYACMVDMLGRAGCLYEAFDMIKQM 476 (680)
Q Consensus 427 ~~g~~~~a~~~~~~m~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 476 (680)
+.|+.+.++.+|++.... .-.. ....|...++.=.+.|+++.+.++.+++
T Consensus 82 ~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~ 133 (280)
T PF05843_consen 82 KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRA 133 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666666666666666554 2122 2245666666666666666666666554
No 176
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.92 E-value=0.018 Score=59.54 Aligned_cols=119 Identities=14% Similarity=0.109 Sum_probs=69.8
Q ss_pred CCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHc--cCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC----CChhHH
Q 037256 207 LLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICN--AFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEK----RDLISW 280 (680)
Q Consensus 207 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~----~~~~~~ 280 (680)
.+.+...+..++..+....+++.++.++-..... ....-..+..++|+.|.+.|..+.+..++..=.. +|..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3445556666666666666666666665555443 1222233445666666666666666666654333 566666
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhh
Q 037256 281 NSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYL 325 (680)
Q Consensus 281 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 325 (680)
|.|+..+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 666666666666666666666666555555666665555555443
No 177
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.90 E-value=0.25 Score=46.33 Aligned_cols=183 Identities=14% Similarity=0.171 Sum_probs=122.6
Q ss_pred hHHHHHHHHHHHH---cC-CCCchH-HHHHHHHHHHHcCCHHHHHHHHhhcCCCCCC---HhHHHHHHHHHHhcCChHHH
Q 037256 328 RQLGRKFHGYIIN---SN-MKIDAT-LRNAVMDMYAKCGDLDTAENMFNDIHPSERN---VSSWNVLIAGYGMHGHGRKA 399 (680)
Q Consensus 328 ~~~a~~i~~~~~~---~~-~~~~~~-~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~---~~~~~~li~~~~~~g~~~~A 399 (680)
.++..+++..++. .| ..++.. ++..+.-+...+|+.+.|...++++...-|+ +.-..+|. +-..|++++|
T Consensus 28 seevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~--lEa~~~~~~A 105 (289)
T KOG3060|consen 28 SEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAML--LEATGNYKEA 105 (289)
T ss_pred HHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHH--HHHhhchhhH
Confidence 3444455544432 23 444443 3445556667789999999999987444343 22233222 3457899999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 037256 400 LEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM-PL 478 (680)
Q Consensus 400 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 478 (680)
+++++...+.. +-|.+++..=+...-..|+.-+|++-+....+ -+..|.+.|.-+.+.|...|++++|.-.++++ -+
T Consensus 106 ~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~-~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 106 IEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD-KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 99999999864 34556777666666677877788887777766 36789999999999999999999999999987 34
Q ss_pred CCCHhHHH-HHHHHHHHH--------HHHHHHHHHccCCCCCchH
Q 037256 479 PPNDSVWG-ALLLACRIH--------GEIAANYLFQLEPEHTGYF 514 (680)
Q Consensus 479 ~p~~~~~~-~ll~a~~~~--------~~~~~~~~~~l~p~~~~~~ 514 (680)
.|-...|. .+-...... +++.+++.+++.|.+....
T Consensus 184 ~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral 228 (289)
T KOG3060|consen 184 QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRAL 228 (289)
T ss_pred CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHH
Confidence 55443332 222222111 6677888889998654433
No 178
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.83 E-value=0.02 Score=52.15 Aligned_cols=91 Identities=16% Similarity=0.125 Sum_probs=64.8
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCC--cccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 037256 74 YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSN--SYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAAL 151 (680)
Q Consensus 74 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~L 151 (680)
....|..+...+...|++++|+..|++.......+. ...+..+...+...|++++|...+...++.. +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 344677777888888999999999998876543332 2466777777888889999988888888764 3345566666
Q ss_pred HHHHHhcCChHHHH
Q 037256 152 VDMYAKCGQTDDGC 165 (680)
Q Consensus 152 i~~~~~~g~~~~A~ 165 (680)
...|...|+...+.
T Consensus 113 g~~~~~~g~~~~a~ 126 (172)
T PRK02603 113 AVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHcCChHhHh
Confidence 77777777655444
No 179
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.81 E-value=0.055 Score=58.33 Aligned_cols=63 Identities=8% Similarity=0.148 Sum_probs=38.9
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhc
Q 037256 380 VSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKL 444 (680)
Q Consensus 380 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 444 (680)
...|.++.......|++++|...+++..+ +.|+...|..+...+...|+.++|.+.+++....
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34555554445555666666666666666 4456556666666666666666666666666554
No 180
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.81 E-value=0.19 Score=49.97 Aligned_cols=194 Identities=13% Similarity=0.161 Sum_probs=111.0
Q ss_pred CHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCC---CCC--HhhHHHHHHHHhhhcchHHHHHHH
Q 037256 261 NVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDC---KPN--PVTALILVSACTYLGSRQLGRKFH 335 (680)
Q Consensus 261 ~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t~~~ll~a~~~~g~~~~a~~i~ 335 (680)
++++|...|++ ....|-..|++++|.+.|.+..+... .+. ...|......+ +..+++.|...+
T Consensus 30 ~~e~Aa~~y~~-----------Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~ 97 (282)
T PF14938_consen 30 DYEEAADLYEK-----------AANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECY 97 (282)
T ss_dssp HHHHHHHHHHH-----------HHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHH
T ss_pred CHHHHHHHHHH-----------HHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHH
Confidence 56666665543 45566777777777777766542110 110 01122222222 222444444433
Q ss_pred HHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhc-CChHHHHHHHHHHHHc----C
Q 037256 336 GYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMH-GHGRKALEFFSQMLEE----G 410 (680)
Q Consensus 336 ~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~----g 410 (680)
...+..|.+.|++..|-+.+..+ ...|... |++++|++.|++..+. |
T Consensus 98 ---------------~~A~~~y~~~G~~~~aA~~~~~l-------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~ 149 (282)
T PF14938_consen 98 ---------------EKAIEIYREAGRFSQAAKCLKEL-------------AEIYEEQLGDYEKAIEYYQKAAELYEQEG 149 (282)
T ss_dssp ---------------HHHHHHHHHCT-HHHHHHHHHHH-------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT
T ss_pred ---------------HHHHHHHHhcCcHHHHHHHHHHH-------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 34456677888888877777665 5566666 8899999999887653 3
Q ss_pred CCCCH--HHHHHHHHHHHccCCHHHHHHHHHHhhhcCC-----CcChH-HHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 037256 411 VKPDH--ITFTSILSACSHAGLIDEGRKCFADMTKLSV-----KPEVK-HYACMVDMLGRAGCLYEAFDMIKQM-PLPPN 481 (680)
Q Consensus 411 ~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-----~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 481 (680)
.|.. ..+..+...+.+.|++++|.++|++...... ..+.. .|-..+-++...|++..|.+.+++. ...|.
T Consensus 150 -~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 150 -SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp --HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred -ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 2221 2566777889999999999999999876522 22232 3334455667789999999999885 33331
Q ss_pred ------HhHHHHHHHHHHHH
Q 037256 482 ------DSVWGALLLACRIH 495 (680)
Q Consensus 482 ------~~~~~~ll~a~~~~ 495 (680)
......|+.+|...
T Consensus 229 F~~s~E~~~~~~l~~A~~~~ 248 (282)
T PF14938_consen 229 FASSREYKFLEDLLEAYEEG 248 (282)
T ss_dssp STTSHHHHHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHHHHHHHhC
Confidence 23445566665543
No 181
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.79 E-value=0.74 Score=46.78 Aligned_cols=445 Identities=10% Similarity=0.050 Sum_probs=241.8
Q ss_pred HHHHHHhh----hhhhHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCCCC-CcchHHHHHHHHHhCCCchHHHHHHHH
Q 037256 26 RQIHSSLT----TSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKS-YSFLWNTMIRAYANNGHCVETLELYST 100 (680)
Q Consensus 26 ~~~h~~~~----~~~~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 100 (680)
-++..++. |...|=+||.-|.. . |..++-+++++++..+.| =..+|..-+++-...++++....+|.+
T Consensus 29 lrLRerIkdNPtnI~S~fqLiq~~~t-q------~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~r 101 (660)
T COG5107 29 LRLRERIKDNPTNILSYFQLIQYLET-Q------ESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGR 101 (660)
T ss_pred HHHHHHhhcCchhHHHHHHHHHHHhh-h------hhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHH
Confidence 45555555 78888899998887 7 999999999999998877 456899888887778889999999988
Q ss_pred HHhCCCCCCcccHHHHHHHHhccCChHH------HHHHHHHHHH-hCCCC-chhHHHHHHHHHH---------hcCChHH
Q 037256 101 MRRSGISSNSYTFPFVLKACASNSLILE------GKVVHGDIIR-TGFLS-DSYVQAALVDMYA---------KCGQTDD 163 (680)
Q Consensus 101 m~~~g~~p~~~t~~~ll~~~~~~~~~~~------a~~~~~~~~~-~g~~~-~~~~~~~Li~~~~---------~~g~~~~ 163 (680)
-+.... +...|..-+.--.+....-+ -.+.++..+. .+++| ....|+..+...- ...++|.
T Consensus 102 CL~k~l--~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~ 179 (660)
T COG5107 102 CLKKSL--NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDK 179 (660)
T ss_pred HHhhhc--cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHH
Confidence 876543 45556655554443332221 2234444443 24444 3345555554332 1223445
Q ss_pred HHHHHhcCCC-C--C-------hhHHHHHHHHHHhC---C----CccHHHHHHHHHHH--cCCCC----CHhHHHH----
Q 037256 164 GCKVFDEMSV-R--D-------LVSWTVMITAYEQA---E----KPEEALILFQKTQQ--EGLLS----DSVTIVS---- 216 (680)
Q Consensus 164 A~~~f~~~~~-~--~-------~~~~~~li~~~~~~---g----~~~~A~~~~~~m~~--~g~~p----~~~t~~~---- 216 (680)
.++.+.++.. | | -..|..=+.-.... | -+-.|...+++... .|... +..|++-
T Consensus 180 iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~ 259 (660)
T COG5107 180 IRNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAART 259 (660)
T ss_pred HHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhcccccc
Confidence 5555655542 1 1 11121111111100 1 13345555555532 23221 1222222
Q ss_pred -------HHHHHhc-----cCC-hHH-HHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHH
Q 037256 217 -------VASAVGQ-----LGD-VLK-AQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNS 282 (680)
Q Consensus 217 -------ll~~~~~-----~~~-~~~-a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~ 282 (680)
.|+--.. .++ ..+ .--+|++.+.. +.-...+|----..+...++-+.|....+.-..-.+. .+.
T Consensus 260 s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps-L~~ 337 (660)
T COG5107 260 SDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS-LTM 337 (660)
T ss_pred ccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc-hhe
Confidence 2211111 111 111 11223333322 2223344444444556677788888777665432111 111
Q ss_pred -HHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHH---hhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 037256 283 -MLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSAC---TYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYA 358 (680)
Q Consensus 283 -li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~---~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~ 358 (680)
+-..|--..+.++....|+...+. ...-.+.+.+= ...|+++.-.+++- +. ...-..+|..+++.-.
T Consensus 338 ~lse~yel~nd~e~v~~~fdk~~q~-----L~r~ys~~~s~~~s~~D~N~e~~~Ell~---kr-~~k~t~v~C~~~N~v~ 408 (660)
T COG5107 338 FLSEYYELVNDEEAVYGCFDKCTQD-----LKRKYSMGESESASKVDNNFEYSKELLL---KR-INKLTFVFCVHLNYVL 408 (660)
T ss_pred eHHHHHhhcccHHHHhhhHHHHHHH-----HHHHHhhhhhhhhccccCCccccHHHHH---HH-HhhhhhHHHHHHHHHH
Confidence 222333344444444444433220 00000001100 11222322222211 11 1134567778888888
Q ss_pred HcCCHHHHHHHHhhcCCC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHccCCHHHH
Q 037256 359 KCGDLDTAENMFNDIHPS---ERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITF-TSILSACSHAGLIDEG 434 (680)
Q Consensus 359 k~g~~~~A~~~f~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~a~~~~g~~~~a 434 (680)
+..-++.|..+|-+..+. .+++..++++|.-++ .|+..-|..+|+--.. .-||...| .-.+.-+...++-+.|
T Consensus 409 r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~--~f~d~~~y~~kyl~fLi~inde~na 485 (660)
T COG5107 409 RKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLL--KFPDSTLYKEKYLLFLIRINDEENA 485 (660)
T ss_pred HHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCcHHHH
Confidence 888889999999887443 567888899998776 4677788888876555 34555433 4455666778888999
Q ss_pred HHHHHHhhhc-CCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHH
Q 037256 435 RKCFADMTKL-SVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM-PLPPNDSVWGALLLACR 493 (680)
Q Consensus 435 ~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~a~~ 493 (680)
..+|+..+.+ .-..-...|..||+-=..-|++..+..+=++| ..-|...+...+.+-+.
T Consensus 486 raLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry~ 546 (660)
T COG5107 486 RALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHHh
Confidence 9999866654 11123568899999888999998888777776 34455544445554444
No 182
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.78 E-value=0.02 Score=58.92 Aligned_cols=73 Identities=14% Similarity=0.029 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 037256 347 ATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSI 421 (680)
Q Consensus 347 ~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 421 (680)
...+..+..+|.+.|++++|...++++....| +...|..+..+|...|++++|+..|++..+ +.|+...+...
T Consensus 36 ~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~--l~P~~~~~~~~ 109 (356)
T PLN03088 36 AELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGAS--LAPGDSRFTKL 109 (356)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHH
Confidence 33344444445555555555555555433333 244455555555555555555555555555 44444433333
No 183
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.76 E-value=0.71 Score=46.08 Aligned_cols=269 Identities=19% Similarity=0.204 Sum_probs=173.5
Q ss_pred hcCCHHHHHHHHHhcC---CCChhHHHHHHHH--HHHcCChhHHHHHHHHHHhCCCCCCH--hhHHHHHHHHhhhcchHH
Q 037256 258 RCGNVEKARLVFDMME---KRDLISWNSMLTG--YIQNGQASEALLLFDEMQNSDCKPNP--VTALILVSACTYLGSRQL 330 (680)
Q Consensus 258 ~~g~~~~A~~~f~~m~---~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~ 330 (680)
-.|+-..|.+.-.+.. ..|....-.++.+ -.-.|++++|.+-|+.|... |.. ..+..|.-.-.+.|+.+.
T Consensus 96 gAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Garea 172 (531)
T COG3898 96 GAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREA 172 (531)
T ss_pred ccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHH
Confidence 4678888887766544 2455555555543 34579999999999999862 332 233344444567888899
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCC---CCCCHh--HHHHHHHHHH---hcCChHHHHHH
Q 037256 331 GRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHP---SERNVS--SWNVLIAGYG---MHGHGRKALEF 402 (680)
Q Consensus 331 a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~~~~~~--~~~~li~~~~---~~g~~~~A~~l 402 (680)
|+++-+..-..- +.-...+.+.+...+..|+++.|+++.+.-.. .++++. .--.|+.+-+ -.-+...|...
T Consensus 173 Ar~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~ 251 (531)
T COG3898 173 ARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDD 251 (531)
T ss_pred HHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 988887776543 33456778899999999999999999986522 245543 2333444322 22346666666
Q ss_pred HHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC----C
Q 037256 403 FSQMLEEGVKPDHI-TFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM----P 477 (680)
Q Consensus 403 ~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~ 477 (680)
-.+..+ +.||.+ .-.....++.+.|++.++-.+++.+-+.. |.+..+...+ +.|.|+. +++-+++. .
T Consensus 252 A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~lY~--~ar~gdt--a~dRlkRa~~L~s 323 (531)
T COG3898 252 ALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIALLYV--RARSGDT--ALDRLKRAKKLES 323 (531)
T ss_pred HHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHHHHH--HhcCCCc--HHHHHHHHHHHHh
Confidence 666655 788876 45555678999999999999999998864 4444443332 4455543 33222222 3
Q ss_pred CCCCHh-HHHHHHHHHHHH-----HHHHHHHHHccCCCCCchHHHHHHHHHh-cCChhHHHHHHHHHHh
Q 037256 478 LPPNDS-VWGALLLACRIH-----GEIAANYLFQLEPEHTGYFVLMSNIYAA-SNKWREVGKLREDMKN 539 (680)
Q Consensus 478 ~~p~~~-~~~~ll~a~~~~-----~~~~~~~~~~l~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~m~~ 539 (680)
++||.. +-.++..+-... ++..++.+..+.|.. +.|.+|+++-.. .|+-.++...+-+..+
T Consensus 324 lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 324 LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred cCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 466543 322233332222 566677788899974 788899988644 4888888777766554
No 184
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.73 E-value=0.47 Score=45.78 Aligned_cols=89 Identities=11% Similarity=0.036 Sum_probs=56.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhc--CCCcChHHHHHHHHHHH
Q 037256 384 NVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKL--SVKPEVKHYACMVDMLG 461 (680)
Q Consensus 384 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~ 461 (680)
..++.-|-...-..+|...+..+... .-..- ..+..-|.+.|.+..|..-++.+++. +.+...+....|+++|.
T Consensus 148 ~~li~~yP~S~ya~~A~~rl~~l~~~---la~~e-~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~ 223 (243)
T PRK10866 148 SKLVRGYPNSQYTTDATKRLVFLKDR---LAKYE-LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYR 223 (243)
T ss_pred HHHHHHCcCChhHHHHHHHHHHHHHH---HHHHH-HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHH
Confidence 33444444444455555444444321 01111 13455678888888888888888887 55566667778888999
Q ss_pred hcCCHHHHHHHHHhC
Q 037256 462 RAGCLYEAFDMIKQM 476 (680)
Q Consensus 462 ~~g~~~~A~~~~~~m 476 (680)
..|..++|.++...+
T Consensus 224 ~lg~~~~a~~~~~~l 238 (243)
T PRK10866 224 QLQLNAQADKVAKII 238 (243)
T ss_pred HcCChHHHHHHHHHH
Confidence 999999888776543
No 185
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.053 Score=54.13 Aligned_cols=51 Identities=20% Similarity=0.249 Sum_probs=30.7
Q ss_pred HccCCHHHHHHHHHHhhhc---CCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256 426 SHAGLIDEGRKCFADMTKL---SVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM 476 (680)
Q Consensus 426 ~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 476 (680)
.+.|++..|.+.+.+.+.. +..|+...|.....+..+.|++++|+.--++.
T Consensus 260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~A 313 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEA 313 (486)
T ss_pred hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhh
Confidence 3456666666666665543 44555556666666666777777776655443
No 186
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.72 E-value=0.0076 Score=45.03 Aligned_cols=61 Identities=13% Similarity=0.196 Sum_probs=31.3
Q ss_pred ccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHhHHHHH
Q 037256 427 HAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM-PLPPNDSVWGAL 488 (680)
Q Consensus 427 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~l 488 (680)
..|++++|.++|+.+.... +-+...+..+..+|.+.|++++|.++++++ ...|+...|..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 3455556666665555442 224445555556666666666666666655 334444444333
No 187
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.72 E-value=1.2 Score=48.27 Aligned_cols=108 Identities=18% Similarity=0.200 Sum_probs=68.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 037256 351 NAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGL 430 (680)
Q Consensus 351 ~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 430 (680)
+--+.-+...|+..+|.++-.+. .-||-..|--=+.+++..+++++-.++-+.+. .+.-|.-...+|.+.|+
T Consensus 688 ~dTv~~li~~g~~k~a~ql~~~F--kipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n 759 (829)
T KOG2280|consen 688 HDTVTTLILIGQNKRAEQLKSDF--KIPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGN 759 (829)
T ss_pred HHHHHHHHHccchHHHHHHHHhc--CCcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhccc
Confidence 33444555667777777777777 66666666666777777777766555544332 14456666777777888
Q ss_pred HHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHh
Q 037256 431 IDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQ 475 (680)
Q Consensus 431 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 475 (680)
.++|..++.+... . .-.+.+|.+.|++.+|.++--+
T Consensus 760 ~~EA~KYiprv~~-----l----~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 760 KDEAKKYIPRVGG-----L----QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHhhhhhccCC-----h----HHHHHHHHHhccHHHHHHHHHH
Confidence 8877777655431 1 1356777777777777666544
No 188
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.72 E-value=0.11 Score=50.26 Aligned_cols=65 Identities=12% Similarity=0.129 Sum_probs=44.6
Q ss_pred CChHHHHHHhhhccCCCCCcc-h---HHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 037256 56 GEPNTARSLFNSIHNDKSYSF-L---WNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKAC 120 (680)
Q Consensus 56 g~~~~A~~~f~~~~~~~p~~~-~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 120 (680)
|++++|.+.|+.+....|+.. . .-.+..++.+.+++++|...|++..+.-+.-....+...+.+.
T Consensus 46 g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~ 114 (243)
T PRK10866 46 GNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGL 114 (243)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHH
Confidence 899999999998888877542 2 1345567788899999999998888764433333444444443
No 189
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.69 E-value=0.087 Score=49.36 Aligned_cols=170 Identities=15% Similarity=0.064 Sum_probs=105.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCC--C--------hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHH
Q 037256 249 QNSIVAMYARCGNVEKARLVFDMMEKR--D--------LISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALIL 318 (680)
Q Consensus 249 ~~~Li~~y~~~g~~~~A~~~f~~m~~~--~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 318 (680)
+++|+..|.-...+++-...|+.-..+ . ...-+.++..+.-.|.+.-.+..+++.++...+.++.-...+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 455555555544444444444433221 1 223455666666777788888888888876656677777778
Q ss_pred HHHHhhhcchHHHHHHHHHHHHcCCCCchHHHH-----HHHHHHHHcCCHHHHHHHHhhcCCC-CCCHhHHHHHHHHHHh
Q 037256 319 VSACTYLGSRQLGRKFHGYIINSNMKIDATLRN-----AVMDMYAKCGDLDTAENMFNDIHPS-ERNVSSWNVLIAGYGM 392 (680)
Q Consensus 319 l~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~-----~li~~y~k~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~ 392 (680)
.+.-.+.|+.+.+...++...+..-..+....+ .....|.-.+++.+|...|.++... ..|++.-|.=.-+..-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 888888888888888888776643333333333 3334455567778888888777433 3345555544444444
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 037256 393 HGHGRKALEFFSQMLEEGVKPDHITFTS 420 (680)
Q Consensus 393 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 420 (680)
.|+..+|++.++.|.+ ..|...+-.+
T Consensus 299 lg~l~DAiK~~e~~~~--~~P~~~l~es 324 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQ--QDPRHYLHES 324 (366)
T ss_pred HHHHHHHHHHHHHHhc--cCCccchhhh
Confidence 6788888888888887 4565554443
No 190
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.64 E-value=0.046 Score=45.87 Aligned_cols=90 Identities=14% Similarity=0.139 Sum_probs=59.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHhhhcC-C-CcChHHHHHHHHHHH
Q 037256 386 LIAGYGMHGHGRKALEFFSQMLEEGVKPDH--ITFTSILSACSHAGLIDEGRKCFADMTKLS-V-KPEVKHYACMVDMLG 461 (680)
Q Consensus 386 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-~-~p~~~~~~~li~~~~ 461 (680)
+..++-..|+.++|+.+|++....|..... ..+..+.+++...|++++|..+|+...... - +-+......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 345566778888888888888887766543 356667777888888888888888777641 0 112222223344667
Q ss_pred hcCCHHHHHHHHHh
Q 037256 462 RAGCLYEAFDMIKQ 475 (680)
Q Consensus 462 ~~g~~~~A~~~~~~ 475 (680)
..|+.++|++.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 78888888777654
No 191
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.61 E-value=1 Score=46.00 Aligned_cols=425 Identities=12% Similarity=0.081 Sum_probs=210.2
Q ss_pred hhhHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCCCCCcchHHHHHHHH--HhCCCchHHHHHHHHHHhC--CCCC--
Q 037256 35 SGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKSYSFLWNTMIRAY--ANNGHCVETLELYSTMRRS--GISS-- 108 (680)
Q Consensus 35 ~~~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~~p~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~--g~~p-- 108 (680)
....+-++++|-. .+++.-........+..| ...|-.+..++ -+.+.+.+|++.+..-.+. +..|
T Consensus 46 Evl~grilnAffl--------~nld~Me~~l~~l~~~~~-~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~ 116 (549)
T PF07079_consen 46 EVLGGRILNAFFL--------NNLDLMEKQLMELRQQFG-KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPW 116 (549)
T ss_pred HHHhhHHHHHHHH--------hhHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccch
Confidence 3445566666666 566666665555555544 23355554443 2456666666666544332 2111
Q ss_pred -C---------cccHHHHHHHHhccCChHHHHHHHHHHHHhCC----CCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC
Q 037256 109 -N---------SYTFPFVLKACASNSLILEGKVVHGDIIRTGF----LSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVR 174 (680)
Q Consensus 109 -~---------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~----~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~~ 174 (680)
| -.-=+..+..+...|++.+|+.+++.++..=+ .-+..+||.++-++++.=-++. -+.+...
T Consensus 117 Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl----~e~~s~d 192 (549)
T PF07079_consen 117 LDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLEL----KESMSSD 192 (549)
T ss_pred hhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHH----HHhcccc
Confidence 1 11112233445566666666666666554322 2456666665555544311111 1111111
Q ss_pred ChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcc--CChHHHHHHHHHHHHccCCCC-hhHHHH
Q 037256 175 DLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQL--GDVLKAQAVHGYAICNAFLED-LCIQNS 251 (680)
Q Consensus 175 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~--~~~~~a~~~~~~~~~~g~~~~-~~~~~~ 251 (680)
=..-|--||..|.+.=+.-++ -.=..+.|-...+..++....-. ..+.--.+++....+.-+.|+ .-+...
T Consensus 193 l~pdyYemilfY~kki~~~d~------~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~ 266 (549)
T PF07079_consen 193 LYPDYYEMILFYLKKIHAFDQ------RPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEP 266 (549)
T ss_pred cChHHHHHHHHHHHHHHHHhh------chHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHH
Confidence 112344444444332111000 00001223333333333322211 122223344444444434443 223344
Q ss_pred HHHHHHhcCCHHHHHHHHHhcC--------CCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHH------
Q 037256 252 IVAMYARCGNVEKARLVFDMME--------KRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALI------ 317 (680)
Q Consensus 252 Li~~y~~~g~~~~A~~~f~~m~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~------ 317 (680)
|+.-+.+ +.+++..+.+.+. +.=+.++..++...++.++..+|-+.+.-+.-- .|+...-.-
T Consensus 267 L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~ 342 (549)
T PF07079_consen 267 LKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPK 342 (549)
T ss_pred HHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHH
Confidence 5555544 4444444433332 233567888888999999999998888776543 333221111
Q ss_pred -HHHHHh-hhc---chHHHHHHHHHHHHcCCCCchHHHHHHH---HHHHHcCC-HHHHHHHHhhcCCCCC-CHhHHHHHH
Q 037256 318 -LVSACT-YLG---SRQLGRKFHGYIINSNMKIDATLRNAVM---DMYAKCGD-LDTAENMFNDIHPSER-NVSSWNVLI 387 (680)
Q Consensus 318 -ll~a~~-~~g---~~~~a~~i~~~~~~~~~~~~~~~~~~li---~~y~k~g~-~~~A~~~f~~~~~~~~-~~~~~~~li 387 (680)
+-+..+ .-. +...-..++..+...++.... ...-|+ .-+-+.|. -++|.++++.+....+ |...-|...
T Consensus 343 ~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQ-Lvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~ 421 (549)
T PF07079_consen 343 VLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQ-LVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVF 421 (549)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHH-HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHH
Confidence 111111 111 122222333333333322111 111121 22333444 7888888888744433 444333322
Q ss_pred ----HHHHh---cCChHHHHHHHHHHHHcCCCCCHH----HHHHHHHH--HHccCCHHHHHHHHHHhhhcCCCcChHHHH
Q 037256 388 ----AGYGM---HGHGRKALEFFSQMLEEGVKPDHI----TFTSILSA--CSHAGLIDEGRKCFADMTKLSVKPEVKHYA 454 (680)
Q Consensus 388 ----~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~a--~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 454 (680)
..|.+ .....+-+++-+-..+.|+.|-.+ .-+.|..| ....|++.++.-+-.-+.+ +.|++.+|.
T Consensus 422 ~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~R 499 (549)
T PF07079_consen 422 LFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYR 499 (549)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHH
Confidence 22322 123445555666666778887543 33444443 4567899888876666654 689999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHH
Q 037256 455 CMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGA 487 (680)
Q Consensus 455 ~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ 487 (680)
.+.-.+....+++||++++..+| |+...|++
T Consensus 500 LlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 500 LLGLCLMENKRYQEAWEYLQKLP--PNERMRDS 530 (549)
T ss_pred HHHHHHHHHhhHHHHHHHHHhCC--CchhhHHH
Confidence 99988899999999999999986 56666654
No 192
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.61 E-value=0.13 Score=55.55 Aligned_cols=121 Identities=12% Similarity=0.070 Sum_probs=72.6
Q ss_pred HHHHHHHHhhcCCCCCC-HhHHHHHHHHHHhc--------CChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHccCCHH
Q 037256 363 LDTAENMFNDIHPSERN-VSSWNVLIAGYGMH--------GHGRKALEFFSQMLEEG-VKPDHITFTSILSACSHAGLID 432 (680)
Q Consensus 363 ~~~A~~~f~~~~~~~~~-~~~~~~li~~~~~~--------g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~ 432 (680)
.+.|..+|++.....|+ ...|..+..+|... ++...+.+...+..... ...+...|..+.-.....|+++
T Consensus 358 ~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~ 437 (517)
T PRK10153 358 LNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTD 437 (517)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHH
Confidence 45666666666555554 23333332222211 11233344444433321 2233456666655556678899
Q ss_pred HHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHhHH
Q 037256 433 EGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM-PLPPNDSVW 485 (680)
Q Consensus 433 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~ 485 (680)
+|...++++...+ |+...|..+...+...|+.++|.+.+++. .+.|...+|
T Consensus 438 ~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 438 EAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred HHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 9999988888764 67788888888888899999998888775 555554444
No 193
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.59 E-value=0.0082 Score=44.37 Aligned_cols=55 Identities=24% Similarity=0.335 Sum_probs=33.7
Q ss_pred HHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 037256 354 MDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLE 408 (680)
Q Consensus 354 i~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 408 (680)
...+.+.|++++|.+.|+++....| +...|..+...+.+.|++++|...|+++.+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455666666666666666655444 345566666666666666666666666665
No 194
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.54 E-value=0.026 Score=54.11 Aligned_cols=95 Identities=19% Similarity=0.195 Sum_probs=51.2
Q ss_pred hcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCC-HhHHHHHHHHHHhcCChHHHHHHH
Q 037256 325 LGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERN-VSSWNVLIAGYGMHGHGRKALEFF 403 (680)
Q Consensus 325 ~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~ 403 (680)
.+++++|...|..+++.. +.|.+.|..-..+|.+.|.++.|.+--+......|+ ..+|..|..+|...|++++|++.|
T Consensus 94 ~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~ay 172 (304)
T KOG0553|consen 94 NKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAY 172 (304)
T ss_pred hhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHH
Confidence 344444444444444433 334444444555566666666666555555333443 345666666666666666666666
Q ss_pred HHHHHcCCCCCHHHHHHHH
Q 037256 404 SQMLEEGVKPDHITFTSIL 422 (680)
Q Consensus 404 ~~m~~~g~~p~~~t~~~ll 422 (680)
++.++ +.|+..+|-.=|
T Consensus 173 kKaLe--ldP~Ne~~K~nL 189 (304)
T KOG0553|consen 173 KKALE--LDPDNESYKSNL 189 (304)
T ss_pred Hhhhc--cCCCcHHHHHHH
Confidence 66666 566665554433
No 195
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.39 E-value=0.022 Score=52.09 Aligned_cols=99 Identities=10% Similarity=0.173 Sum_probs=69.0
Q ss_pred HHHHhhhccCCCCCcchHHHHHHHHHhC-----CCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccC-----------
Q 037256 61 ARSLFNSIHNDKSYSFLWNTMIRAYANN-----GHCVETLELYSTMRRSGISSNSYTFPFVLKACASNS----------- 124 (680)
Q Consensus 61 A~~~f~~~~~~~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~----------- 124 (680)
-...|+..+....|-.+|..++..|.+. |..+=....+..|.+.|+.-|..+|+.||..+=+..
T Consensus 33 ~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F 112 (228)
T PF06239_consen 33 HEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEF 112 (228)
T ss_pred hHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHh
Confidence 3455666533333667777777777654 455556666778888888888888888888765422
Q ss_pred -----ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 037256 125 -----LILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCG 159 (680)
Q Consensus 125 -----~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g 159 (680)
+-+-|.+++++|...|+-||..++..|++.+++.+
T Consensus 113 ~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 113 MHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 33457788888888888888888888888775544
No 196
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.38 E-value=0.1 Score=43.89 Aligned_cols=91 Identities=18% Similarity=0.160 Sum_probs=53.8
Q ss_pred HHHHHHhCCCccHHHHHHHHHHHcCCCCC--HhHHHHHHHHHhccCChHHHHHHHHHHHHccCCC--ChhHHHHHHHHHH
Q 037256 182 MITAYEQAEKPEEALILFQKTQQEGLLSD--SVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLE--DLCIQNSIVAMYA 257 (680)
Q Consensus 182 li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~Li~~y~ 257 (680)
+..++-..|+.++|+.+|++....|.... ...+..+.+.+...|++++|..+++........+ +..+...+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 44566677888888888888887776544 2345556666677777777777777666542110 1222222333455
Q ss_pred hcCCHHHHHHHHHhc
Q 037256 258 RCGNVEKARLVFDMM 272 (680)
Q Consensus 258 ~~g~~~~A~~~f~~m 272 (680)
..|+.++|.+.+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 556666665555443
No 197
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.31 E-value=0.018 Score=43.00 Aligned_cols=60 Identities=15% Similarity=0.230 Sum_probs=31.9
Q ss_pred hcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHH
Q 037256 325 LGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNV 385 (680)
Q Consensus 325 ~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~ 385 (680)
.|+++.|.++++.+.+.. +.+..+...+..+|.+.|++++|.++++++....|+...|..
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 63 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQ 63 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence 344444444444444433 335555556666666666666666666666444555444433
No 198
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.27 E-value=0.022 Score=42.58 Aligned_cols=63 Identities=24% Similarity=0.386 Sum_probs=43.8
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccC-CHHHHHHHHHHhhh
Q 037256 379 NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHI-TFTSILSACSHAG-LIDEGRKCFADMTK 443 (680)
Q Consensus 379 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g-~~~~a~~~~~~m~~ 443 (680)
+..+|..+...+...|++++|+..|++..+ +.|+.. .|..+..++...| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~--~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIE--LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHH--HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 345677777777777777777777777777 456543 6666666777777 57777777776654
No 199
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.05 E-value=1 Score=40.24 Aligned_cols=100 Identities=12% Similarity=0.098 Sum_probs=49.2
Q ss_pred CCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC---CHhHHHH
Q 037256 309 KPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER---NVSSWNV 385 (680)
Q Consensus 309 ~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~---~~~~~~~ 385 (680)
.|+...-..+..+....|+..+|...+++....-+..|..+.-.+.++....++...|...++++.+..| ++.+--.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 3444444445555555555555555555555444444555555555555555555555555555422211 1222333
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH
Q 037256 386 LIAGYGMHGHGRKALEFFSQMLE 408 (680)
Q Consensus 386 li~~~~~~g~~~~A~~l~~~m~~ 408 (680)
+...|...|++.+|..-|+....
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHH
Confidence 34445555555555555555554
No 200
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.95 E-value=0.017 Score=43.30 Aligned_cols=63 Identities=22% Similarity=0.281 Sum_probs=47.3
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcC-ChHHHHHHHHHHHH
Q 037256 346 DATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHG-HGRKALEFFSQMLE 408 (680)
Q Consensus 346 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~ 408 (680)
+..+|..+...+.+.|++++|...|++.....| +...|..+..+|...| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 345667777778888888888888887754445 4667788888888888 68888888887776
No 201
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=95.90 E-value=0.014 Score=43.16 Aligned_cols=49 Identities=18% Similarity=0.262 Sum_probs=39.4
Q ss_pred CChHHHHHHhhhccCCCC-CcchHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 037256 56 GEPNTARSLFNSIHNDKS-YSFLWNTMIRAYANNGHCVETLELYSTMRRS 104 (680)
Q Consensus 56 g~~~~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 104 (680)
|++++|++.|+.+....| +...|..+...+.+.|++++|...|+++.+.
T Consensus 11 g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 11 GDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp THHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888888888888888877 5667888888888888888888888888764
No 202
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=0.12 Score=50.02 Aligned_cols=96 Identities=9% Similarity=0.055 Sum_probs=55.5
Q ss_pred CcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc-C--ChHHHHHHHhcCCC---CChhHHHHH
Q 037256 109 NSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKC-G--QTDDGCKVFDEMSV---RDLVSWTVM 182 (680)
Q Consensus 109 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~-g--~~~~A~~~f~~~~~---~~~~~~~~l 182 (680)
|...|-.|-.+|...++...|...|....+.. .+++..+..+...+... | ...++..+|+++.. .|+.+...|
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL 233 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL 233 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence 55566666666666666666666666666553 34444444444433322 1 23455666665542 245555666
Q ss_pred HHHHHhCCCccHHHHHHHHHHHc
Q 037256 183 ITAYEQAEKPEEALILFQKTQQE 205 (680)
Q Consensus 183 i~~~~~~g~~~~A~~~~~~m~~~ 205 (680)
...+.+.|++.+|...++.|.+.
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhc
Confidence 66777777777777777777765
No 203
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.80 E-value=0.095 Score=51.06 Aligned_cols=92 Identities=16% Similarity=0.100 Sum_probs=49.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHhhhc--CCCcChHHHHHH
Q 037256 383 WNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH----ITFTSILSACSHAGLIDEGRKCFADMTKL--SVKPEVKHYACM 456 (680)
Q Consensus 383 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~l 456 (680)
|+.-+..+.+.|++++|+..|+.+.+ ..|+. ..+..+..++...|++++|...|+.+.+. +-+.....+-.+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~--~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVK--KYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 33333333445666666666666665 23443 24445555666666666666666666653 112223334444
Q ss_pred HHHHHhcCCHHHHHHHHHhC
Q 037256 457 VDMLGRAGCLYEAFDMIKQM 476 (680)
Q Consensus 457 i~~~~~~g~~~~A~~~~~~m 476 (680)
...+...|+.++|...+++.
T Consensus 224 g~~~~~~g~~~~A~~~~~~v 243 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQV 243 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 55555666666666666554
No 204
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.78 E-value=0.16 Score=50.68 Aligned_cols=259 Identities=13% Similarity=0.036 Sum_probs=115.1
Q ss_pred HHHhCCCccHHHHHHHHHHHcCCCCCHh----HHHHHHHHHhccCChHHHHHHHHHHH--Hc--cCC-CChhHHHHHHHH
Q 037256 185 AYEQAEKPEEALILFQKTQQEGLLSDSV----TIVSVASAVGQLGDVLKAQAVHGYAI--CN--AFL-EDLCIQNSIVAM 255 (680)
Q Consensus 185 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~--~~--g~~-~~~~~~~~Li~~ 255 (680)
-+++.|+....+.+|+..++.|- -|.. .|..+-.+|.-.+++++|.++|..=+ .. |-. -.......|.+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 35667777777777777776652 2322 34455556666677777777654321 11 100 011122223334
Q ss_pred HHhcCCHHHHHHHHHhcC-------C--CChhHHHHHHHHHHHcCC--------------------hhHHHHHHHHH---
Q 037256 256 YARCGNVEKARLVFDMME-------K--RDLISWNSMLTGYIQNGQ--------------------ASEALLLFDEM--- 303 (680)
Q Consensus 256 y~~~g~~~~A~~~f~~m~-------~--~~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m--- 303 (680)
+--.|.+++|.-...+-. . .....+..+...|...|+ ++.|.++|.+=
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 444555555543322211 0 012334445555554443 12233333221
Q ss_pred -HhCCCC-CCHhhHHHHHHHHhhhcchHHHHHHHHHHHH----cCCC-CchHHHHHHHHHHHHcCCHHHHHHHHhhcCC-
Q 037256 304 -QNSDCK-PNPVTALILVSACTYLGSRQLGRKFHGYIIN----SNMK-IDATLRNAVMDMYAKCGDLDTAENMFNDIHP- 375 (680)
Q Consensus 304 -~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~----~~~~-~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~- 375 (680)
...|-. .-...|..+-..|.-.|+++.+...|+.-+. .|-. .....+..|..++.-.|+++.|.+.|.....
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 111100 0112344444444555666666666654321 2211 1223344455555555666666655554310
Q ss_pred ----CCC--CHhHHHHHHHHHHhcCChHHHHHHHHHHHH----cC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhc
Q 037256 376 ----SER--NVSSWNVLIAGYGMHGHGRKALEFFSQMLE----EG-VKPDHITFTSILSACSHAGLIDEGRKCFADMTKL 444 (680)
Q Consensus 376 ----~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 444 (680)
..+ ...+..+|...|--...+++|+.++.+=.. .+ ..-....+.+|..++...|..++|+.+.+.-.+.
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 011 222334455555555555555555443221 00 1112234555555555555555555555554444
No 205
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=1.9 Score=43.59 Aligned_cols=165 Identities=13% Similarity=0.050 Sum_probs=104.3
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChhH-HHHHHH--HHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHH
Q 037256 254 AMYARCGNVEKARLVFDMMEKRDLIS-WNSMLT--GYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQL 330 (680)
Q Consensus 254 ~~y~~~g~~~~A~~~f~~m~~~~~~~-~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 330 (680)
.++.-.|+.++|...--.+.+-|... +...++ ++--.++.+.|...|++.+.. .|+...-.+. ..
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~----------~~ 244 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSA----------SM 244 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhH----------hh
Confidence 35566677777777666555543322 222232 334567788888888877754 4554432221 11
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-----CHhHHHHHHHHHHhcCChHHHHHHHHH
Q 037256 331 GRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-----NVSSWNVLIAGYGMHGHGRKALEFFSQ 405 (680)
Q Consensus 331 a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~ 405 (680)
....+......| ....+.|.+..|.+.|.+.....| +...|-.......+.|+..+|+.--++
T Consensus 245 ~~k~le~~k~~g------------N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~ 312 (486)
T KOG0550|consen 245 MPKKLEVKKERG------------NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNE 312 (486)
T ss_pred hHHHHHHHHhhh------------hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhh
Confidence 122222223332 446788999999999998866555 344566666777889999999988888
Q ss_pred HHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhhhc
Q 037256 406 MLEEGVKPDHI-TFTSILSACSHAGLIDEGRKCFADMTKL 444 (680)
Q Consensus 406 m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 444 (680)
... +.|... .+..-..++.-.+++++|.+-++...+.
T Consensus 313 Al~--iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 313 ALK--IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred hhh--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 766 444433 4444445667788999999999988776
No 206
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.63 E-value=2 Score=40.28 Aligned_cols=83 Identities=12% Similarity=0.042 Sum_probs=47.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhc--CCCcChHHHHHHHHHH
Q 037256 383 WNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKL--SVKPEVKHYACMVDML 460 (680)
Q Consensus 383 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~ 460 (680)
+..++.-|-......+|...+..+... .-.. -..+..-|.+.|.+..|..-++.+++. +.+........|+..|
T Consensus 113 ~~~li~~yP~S~y~~~A~~~l~~l~~~---la~~-e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y 188 (203)
T PF13525_consen 113 FEELIKRYPNSEYAEEAKKRLAELRNR---LAEH-ELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAY 188 (203)
T ss_dssp HHHHHHH-TTSTTHHHHHHHHHHHHHH---HHHH-HHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCchHHHHHHHHHHHHHHH---HHHH-HHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHH
Confidence 344455555555666665555544431 0011 122455678888888888888888876 3333345566777888
Q ss_pred HhcCCHHHH
Q 037256 461 GRAGCLYEA 469 (680)
Q Consensus 461 ~~~g~~~~A 469 (680)
.+.|..+.|
T Consensus 189 ~~l~~~~~a 197 (203)
T PF13525_consen 189 YKLGLKQAA 197 (203)
T ss_dssp HHTT-HHHH
T ss_pred HHhCChHHH
Confidence 888877744
No 207
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.53 E-value=4.5 Score=43.69 Aligned_cols=200 Identities=12% Similarity=0.021 Sum_probs=99.6
Q ss_pred CChHHHHHHhhhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHh-CCCCCCcc--cHH--HH--HHHHhccCChHH
Q 037256 56 GEPNTARSLFNSIHNDKSYSFLWNTMIRAYANNGHCVETLELYSTMRR-SGISSNSY--TFP--FV--LKACASNSLILE 128 (680)
Q Consensus 56 g~~~~A~~~f~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~--t~~--~l--l~~~~~~~~~~~ 128 (680)
-.+++|.+..+. .|-...|..+...-.+.-.++-|...|-+... .|++.-.. |.. .+ ....+--|.+++
T Consensus 677 vgledA~qfiEd----nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~fee 752 (1189)
T KOG2041|consen 677 VGLEDAIQFIED----NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEE 752 (1189)
T ss_pred hchHHHHHHHhc----CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhH
Confidence 345667666554 44556788777766665566666666655432 12211000 000 00 111223478888
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC-----ChhHHHHHHHHHHhCCCccHHHHHHHHH-
Q 037256 129 GKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVR-----DLVSWTVMITAYEQAEKPEEALILFQKT- 202 (680)
Q Consensus 129 a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m- 202 (680)
|++++-++-+.++ -|.++.+.|++-...++++.-... -..+|+.+...++....+++|.+.|..-
T Consensus 753 aek~yld~drrDL---------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~ 823 (1189)
T KOG2041|consen 753 AEKLYLDADRRDL---------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG 823 (1189)
T ss_pred hhhhhhccchhhh---------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9888877765542 345566667766666666543211 1124444444444444444444443321
Q ss_pred ------------H--------HcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCH
Q 037256 203 ------------Q--------QEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNV 262 (680)
Q Consensus 203 ------------~--------~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~ 262 (680)
. ...++.|...+-.+..++.+.|.-++|.+.|-. .+.+ .+-+..|....++
T Consensus 824 ~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr---~s~p------kaAv~tCv~LnQW 894 (1189)
T KOG2041|consen 824 DTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR---RSLP------KAAVHTCVELNQW 894 (1189)
T ss_pred chHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh---ccCc------HHHHHHHHHHHHH
Confidence 1 112334444555555666666666665554422 2211 2234455555666
Q ss_pred HHHHHHHHhcCCCCh
Q 037256 263 EKARLVFDMMEKRDL 277 (680)
Q Consensus 263 ~~A~~~f~~m~~~~~ 277 (680)
.+|.++-+...-|.+
T Consensus 895 ~~avelaq~~~l~qv 909 (1189)
T KOG2041|consen 895 GEAVELAQRFQLPQV 909 (1189)
T ss_pred HHHHHHHHhccchhH
Confidence 666666655544433
No 208
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.50 E-value=0.12 Score=49.02 Aligned_cols=113 Identities=19% Similarity=0.220 Sum_probs=87.9
Q ss_pred HHHHHHHhhcCCCCCCHhHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC---------
Q 037256 364 DTAENMFNDIHPSERNVSSWNVLIAGYGMH-----GHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAG--------- 429 (680)
Q Consensus 364 ~~A~~~f~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g--------- 429 (680)
-..++.|..+.+.++|-.+|-+++..|..+ +..+=....++.|.+-|+.-|..+|..||+.+-+..
T Consensus 51 v~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~ 130 (406)
T KOG3941|consen 51 VHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQK 130 (406)
T ss_pred cchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHH
Confidence 345667777765688888999999888654 556667777889999999999999999998875532
Q ss_pred -------CHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHH-HHHHHHhC
Q 037256 430 -------LIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYE-AFDMIKQM 476 (680)
Q Consensus 430 -------~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m 476 (680)
+-+-++.++++|...|+.||.++-..|+.+++|.|..-. ..++.--|
T Consensus 131 ~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 131 VFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 234578999999999999999999999999999887543 33443334
No 209
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.45 E-value=0.14 Score=49.97 Aligned_cols=96 Identities=14% Similarity=0.099 Sum_probs=67.8
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCH----hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH----HHH
Q 037256 347 ATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNV----SSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH----ITF 418 (680)
Q Consensus 347 ~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~ 418 (680)
...|...+..+.+.|++++|...|+.+....|+. ..+--+...|...|++++|...|+.+... .|+. ..+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dAl 220 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHHH
Confidence 3445555555566788888888888875555543 35666777888888888888888888873 3442 244
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhhc
Q 037256 419 TSILSACSHAGLIDEGRKCFADMTKL 444 (680)
Q Consensus 419 ~~ll~a~~~~g~~~~a~~~~~~m~~~ 444 (680)
..+...+...|+.++|..+|+.+.+.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44555677888888888888888765
No 210
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.41 E-value=0.84 Score=41.81 Aligned_cols=176 Identities=14% Similarity=0.081 Sum_probs=99.3
Q ss_pred cCCHHHHHHHHhhcCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHH
Q 037256 360 CGDLDTAENMFNDIHPSERN-VSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH-ITFTSILSACSHAGLIDEGRKC 437 (680)
Q Consensus 360 ~g~~~~A~~~f~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~ 437 (680)
.|-..-|+--|.+.....|+ +..||-+.--+...|+++.|.+.|+...+ +.|.. .++..-.-++--.|+++-|.+-
T Consensus 78 lGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LAq~d 155 (297)
T COG4785 78 LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLAQDD 155 (297)
T ss_pred hhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhhHHH
Confidence 34444555555555444554 45677777777777888888888887777 44432 2222222234456777777766
Q ss_pred HHHhhhc-CCCcChHHHHHHHHHHHhcCCHHHHHHHH-HhCCCCCCHhHHHHHHHHHHHH---HHHHHHHHHccCCCC--
Q 037256 438 FADMTKL-SVKPEVKHYACMVDMLGRAGCLYEAFDMI-KQMPLPPNDSVWGALLLACRIH---GEIAANYLFQLEPEH-- 510 (680)
Q Consensus 438 ~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~~p~~~~~~~ll~a~~~~---~~~~~~~~~~l~p~~-- 510 (680)
|...-+. .-.|-...|--++ -+.=++.+|..-+ ++. .+.|...|...|-.+.-. -+..++++.+-..++
T Consensus 156 ~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~-~~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~ 231 (297)
T COG4785 156 LLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRA-EKSDKEQWGWNIVEFYLGKISEETLMERLKADATDNTS 231 (297)
T ss_pred HHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHH-HhccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchHH
Confidence 5554443 2233333333332 2333555554333 333 234555565555444322 233344444333333
Q ss_pred -----CchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 037256 511 -----TGYFVLMSNIYAASNKWREVGKLREDMKNKG 541 (680)
Q Consensus 511 -----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 541 (680)
.++|.-|+.-|-..|..++|..+|+......
T Consensus 232 ~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 232 LAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 3678889999999999999999999987643
No 211
>PRK15331 chaperone protein SicA; Provisional
Probab=95.35 E-value=0.16 Score=44.62 Aligned_cols=117 Identities=10% Similarity=0.039 Sum_probs=79.2
Q ss_pred HHHHHhccccccHHHHHHHhh--hhhhHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCCCC-CcchHHHHHHHHHhCC
Q 037256 13 DQLLKSCNFLASLRQIHSSLT--TSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKS-YSFLWNTMIRAYANNG 89 (680)
Q Consensus 13 ~~~l~~~~~~~~~~~~h~~~~--~~~~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g 89 (680)
..+..+...-..++.+|+.-. =-.+|..--+.|.. |++++|..+|.-+..-.| |..-|..|...+-..+
T Consensus 14 ~~i~~al~~G~tlk~l~gis~~~le~iY~~Ay~~y~~--------Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k 85 (165)
T PRK15331 14 EMIWDAVSEGATLKDVHGIPQDMMDGLYAHAYEFYNQ--------GRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKK 85 (165)
T ss_pred HHHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHH
Confidence 344444444455566665433 11344445566666 999999999988776655 5556777777888888
Q ss_pred CchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHH
Q 037256 90 HCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIR 138 (680)
Q Consensus 90 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 138 (680)
++++|+..|...-..+. -|...+-..-..+...|+.+.|+..|...+.
T Consensus 86 ~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 86 QFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 99999999887655443 2444455566677788888888888887776
No 212
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.35 E-value=2.8 Score=42.75 Aligned_cols=72 Identities=17% Similarity=0.153 Sum_probs=48.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCC---C----hhHHHHHHHHHHH---cCChhHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 037256 251 SIVAMYARCGNVEKARLVFDMMEKR---D----LISWNSMLTGYIQ---NGQASEALLLFDEMQNSDCKPNPVTALILVS 320 (680)
Q Consensus 251 ~Li~~y~~~g~~~~A~~~f~~m~~~---~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 320 (680)
.|+-.|-...+++...++++.+... + ...--...-++.+ .|+.++|++++..+....-.+++.|+..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4444688888888888888888753 1 1111223345556 7888999999888666656777777766655
Q ss_pred HH
Q 037256 321 AC 322 (680)
Q Consensus 321 a~ 322 (680)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 44
No 213
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.21 E-value=0.18 Score=47.25 Aligned_cols=49 Identities=20% Similarity=0.262 Sum_probs=34.1
Q ss_pred CChHHHHHHhhhccCCCCCc----chHHHHHHHHHhCCCchHHHHHHHHHHhC
Q 037256 56 GEPNTARSLFNSIHNDKSYS----FLWNTMIRAYANNGHCVETLELYSTMRRS 104 (680)
Q Consensus 56 g~~~~A~~~f~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 104 (680)
|++++|.+.|+.+..+.|+. .+.-.++.++.+.|++.+|...|+++.+.
T Consensus 19 g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 19 GDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp T-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888888888887765532 24555677778888888888888887765
No 214
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.11 E-value=0.28 Score=41.66 Aligned_cols=49 Identities=20% Similarity=0.467 Sum_probs=35.9
Q ss_pred CCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHhHHHHHHHHHH
Q 037256 445 SVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM----PLPPNDSVWGALLLACR 493 (680)
Q Consensus 445 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~a~~ 493 (680)
...|+..+..+++.+|+..|++..|+++++.. +++-+...|..|+.=+.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 55677888888888888888888888777665 55555777777776554
No 215
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.09 E-value=0.088 Score=52.46 Aligned_cols=253 Identities=14% Similarity=0.080 Sum_probs=120.3
Q ss_pred HHHhCCCchHHHHHHHHHHhCCCCCCc----ccHHHHHHHHhccCChHHHHHHHHHHHH--h--CCC-CchhHHHHHHHH
Q 037256 84 AYANNGHCVETLELYSTMRRSGISSNS----YTFPFVLKACASNSLILEGKVVHGDIIR--T--GFL-SDSYVQAALVDM 154 (680)
Q Consensus 84 ~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~--g~~-~~~~~~~~Li~~ 154 (680)
-+++.|+.+..+.+|+...+.|.. |. .+|..|-++|.-.+++++|.+.|..=+- . |-. -..-....|.+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 477888888999999988887743 33 3455666677777888888887654221 1 100 011111223333
Q ss_pred HHhcCChHHHHHHHhcC-------CCC--ChhHHHHHHHHHHhCCCc--------------------cHHHHHHHHHHH-
Q 037256 155 YAKCGQTDDGCKVFDEM-------SVR--DLVSWTVMITAYEQAEKP--------------------EEALILFQKTQQ- 204 (680)
Q Consensus 155 ~~~~g~~~~A~~~f~~~-------~~~--~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~m~~- 204 (680)
+--.|.+++|.-.-.+- ..+ ...++..+...|...|+. +.|.++|.+=++
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 44456666665432211 111 122334455555544431 223333332111
Q ss_pred ---cCCC-CCHhHHHHHHHHHhccCChHHHHHHHHHHHH----ccC-CCChhHHHHHHHHHHhcCCHHHHHHHHHhcC--
Q 037256 205 ---EGLL-SDSVTIVSVASAVGQLGDVLKAQAVHGYAIC----NAF-LEDLCIQNSIVAMYARCGNVEKARLVFDMME-- 273 (680)
Q Consensus 205 ---~g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~----~g~-~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~-- 273 (680)
.|-. .--..|..+-..|--.|+++.+...|..-+. .|- ......+..|.+++.-.|+++.|.+.|+...
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 1100 0112233444444455667777766654332 121 1123345556666666666666666555322
Q ss_pred -----CC--ChhHHHHHHHHHHHcCChhHHHHHHHHHHhC-----CCCCCHhhHHHHHHHHhhhcchHHHHHHHHH
Q 037256 274 -----KR--DLISWNSMLTGYIQNGQASEALLLFDEMQNS-----DCKPNPVTALILVSACTYLGSRQLGRKFHGY 337 (680)
Q Consensus 274 -----~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~ 337 (680)
.+ ...+..+|...|.-..++++|+.++.+-... ...-....+.++..++...|..++|..+...
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~ 340 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAEL 340 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 12 2233444555555555556665555443210 0111233444555555555555555444333
No 216
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.07 E-value=0.093 Score=39.67 Aligned_cols=53 Identities=19% Similarity=0.199 Sum_probs=25.4
Q ss_pred HHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 037256 356 MYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLE 408 (680)
Q Consensus 356 ~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 408 (680)
+|.+.+++++|.++++.+....| ++..|......+.+.|++++|.+.|++..+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34445555555555555433322 233444444455555555555555555554
No 217
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.06 E-value=0.071 Score=45.25 Aligned_cols=96 Identities=13% Similarity=0.168 Sum_probs=57.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 037256 347 ATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACS 426 (680)
Q Consensus 347 ~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 426 (680)
..++.+++-++++.|+++....+.+..=....+ +-...+. --......|+..+..+++.+|+
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~---------~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~ 63 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVN---------GKKKEGD---------YPPSSPLYPTSRLLIAIVHSFG 63 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCC---------CccccCc---------cCCCCCCCCCHHHHHHHHHHHH
Confidence 455667777777777777777777665111100 0000000 0112235677777777777777
Q ss_pred ccCCHHHHHHHHHHhhhc-CCCcChHHHHHHHHHH
Q 037256 427 HAGLIDEGRKCFADMTKL-SVKPEVKHYACMVDML 460 (680)
Q Consensus 427 ~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~ 460 (680)
..|++..|.++.+...+. +++-+...|..|+.-.
T Consensus 64 ~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 64 YNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred hcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 777777777777777776 7766777777766543
No 218
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.01 E-value=0.32 Score=50.09 Aligned_cols=66 Identities=14% Similarity=0.059 Sum_probs=51.9
Q ss_pred CCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCH----hHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 037256 344 KIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNV----SSWNVLIAGYGMHGHGRKALEFFSQMLEE 409 (680)
Q Consensus 344 ~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 409 (680)
+.+...++.+..+|.+.|++++|...|++.....|+. .+|..+..+|...|+.++|++.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3456777788888888888888888888876666663 35888888888888888888888888774
No 219
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.96 E-value=0.081 Score=46.63 Aligned_cols=55 Identities=13% Similarity=0.334 Sum_probs=25.2
Q ss_pred HHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 037256 352 AVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQM 406 (680)
Q Consensus 352 ~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m 406 (680)
.++..+...|++++|.+..+.+....| |...|..+|.+|...|+..+|++.|+++
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 344444455555555555554432222 3444555555555555555555555444
No 220
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=94.92 E-value=5.2 Score=41.00 Aligned_cols=429 Identities=9% Similarity=0.035 Sum_probs=221.1
Q ss_pred HHhhhccCCCC-CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCC
Q 037256 63 SLFNSIHNDKS-YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGF 141 (680)
Q Consensus 63 ~~f~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 141 (680)
++=+++.. .| |..+|-.||.-+...|..++..+++++|..- .+--...|..-+++=...+++...+.+|.+.++..+
T Consensus 30 rLRerIkd-NPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l 107 (660)
T COG5107 30 RLRERIKD-NPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL 107 (660)
T ss_pred HHHHHhhc-CchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc
Confidence 44444443 45 8889999999999999999999999999753 222345676667666667889999999999988754
Q ss_pred CCchhHHHHHHHHHHhcCC---------hHHHHHHHhc-C-CC-CChhHHHHHHHHHH---hCCC------ccHHHHHHH
Q 037256 142 LSDSYVQAALVDMYAKCGQ---------TDDGCKVFDE-M-SV-RDLVSWTVMITAYE---QAEK------PEEALILFQ 200 (680)
Q Consensus 142 ~~~~~~~~~Li~~~~~~g~---------~~~A~~~f~~-~-~~-~~~~~~~~li~~~~---~~g~------~~~A~~~~~ 200 (680)
. ...|...++--.+.+. +-+|.++.-. + -+ .....|+..+..+- ..|. .+...+.|.
T Consensus 108 ~--ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ 185 (660)
T COG5107 108 N--LDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYM 185 (660)
T ss_pred c--HhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 4 5566655553333321 1122222111 0 12 23345555443321 1233 344455566
Q ss_pred HHHHcCCCC------CHhHHHHHHHHHh-------ccCChHHHHHHHHHHHH--ccCC----CChhHHHH----------
Q 037256 201 KTQQEGLLS------DSVTIVSVASAVG-------QLGDVLKAQAVHGYAIC--NAFL----EDLCIQNS---------- 251 (680)
Q Consensus 201 ~m~~~g~~p------~~~t~~~ll~~~~-------~~~~~~~a~~~~~~~~~--~g~~----~~~~~~~~---------- 251 (680)
+|+...+.- |-..|..-+.... ...-+-.|.+.+.++.. .|+. .+..++|-
T Consensus 186 ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~Wl 265 (660)
T COG5107 186 RALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWL 265 (660)
T ss_pred HHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhh
Confidence 655432110 0011111111110 01113344555554432 2321 12222221
Q ss_pred -HHHHHHhc-----CC-H-HHHHHHHHhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 037256 252 -IVAMYARC-----GN-V-EKARLVFDMMEK---RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVS 320 (680)
Q Consensus 252 -Li~~y~~~-----g~-~-~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 320 (680)
.|..=... |+ . ...--+|++... -....|----.-+...++-+.|+...++-.+. .|. .+..++
T Consensus 266 NwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--sps---L~~~ls 340 (660)
T COG5107 266 NWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPS---LTMFLS 340 (660)
T ss_pred hHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCc---hheeHH
Confidence 22111111 11 1 111122333222 12333443334455677788888776554322 333 333333
Q ss_pred HHhhhc-chHHHHHHHHHHHHcCCCCchHHHHHHHHHHH---HcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCCh
Q 037256 321 ACTYLG-SRQLGRKFHGYIINSNMKIDATLRNAVMDMYA---KCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHG 396 (680)
Q Consensus 321 a~~~~g-~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~---k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~ 396 (680)
-|.... +-+.....|+...+. ..---+.++.=+ ..|+++.-.+++-.- ...=...|...+..-.+..-.
T Consensus 341 e~yel~nd~e~v~~~fdk~~q~-----L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr--~~k~t~v~C~~~N~v~r~~Gl 413 (660)
T COG5107 341 EYYELVNDEEAVYGCFDKCTQD-----LKRKYSMGESESASKVDNNFEYSKELLLKR--INKLTFVFCVHLNYVLRKRGL 413 (660)
T ss_pred HHHhhcccHHHHhhhHHHHHHH-----HHHHHhhhhhhhhccccCCccccHHHHHHH--HhhhhhHHHHHHHHHHHHhhH
Confidence 343332 222222223222110 000000000000 023443333332221 234456788888888888889
Q ss_pred HHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHH-HHHHHHHHhcCCHHHHHHHHH
Q 037256 397 RKALEFFSQMLEEG-VKPDHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHY-ACMVDMLGRAGCLYEAFDMIK 474 (680)
Q Consensus 397 ~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~ 474 (680)
+.|..+|-+..+.| +.++...+++++.-++ .|+..-|..+|+.-... -||...| +..+..+.+.++-+.|..+|+
T Consensus 414 ~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFe 490 (660)
T COG5107 414 EAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFE 490 (660)
T ss_pred HHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 99999999999998 6678888999887665 57888999999876654 2343333 456677889999999999998
Q ss_pred hC--CCCCC--HhHHHHHHHHHHHH-----HHHHHHHHHccCCCC
Q 037256 475 QM--PLPPN--DSVWGALLLACRIH-----GEIAANYLFQLEPEH 510 (680)
Q Consensus 475 ~m--~~~p~--~~~~~~ll~a~~~~-----~~~~~~~~~~l~p~~ 510 (680)
.. .+..+ ...|..+|.-=... +-..-+++.++-|..
T Consensus 491 tsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 491 TSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 65 22222 34565555443333 222334566677764
No 221
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=94.90 E-value=0.72 Score=48.89 Aligned_cols=172 Identities=12% Similarity=0.087 Sum_probs=93.1
Q ss_pred HHHHHhCC--CchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 037256 82 IRAYANNG--HCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCG 159 (680)
Q Consensus 82 i~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g 159 (680)
-.+|.+-. .+-+-+.-+++|+++|-.|+.. .+...|+-.|.+.+|.++|. +.|.+ |.-+.+|....
T Consensus 605 RkAY~rVRdl~~L~li~EL~~~k~rge~P~~i---LlA~~~Ay~gKF~EAAklFk---~~G~e------nRAlEmyTDlR 672 (1081)
T KOG1538|consen 605 RKAYIRVRDLRYLELISELEERKKRGETPNDL---LLADVFAYQGKFHEAAKLFK---RSGHE------NRALEMYTDLR 672 (1081)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhcCCCchHH---HHHHHHHhhhhHHHHHHHHH---HcCch------hhHHHHHHHHH
Confidence 34454433 2334445566778888778764 34455777888999988874 45543 34456666666
Q ss_pred ChHHHHHHHhcCCC--------------CChhHHHHHHHHHHhCCCccHHHHHHHH------HHHcCCC---CCHhHHHH
Q 037256 160 QTDDGCKVFDEMSV--------------RDLVSWTVMITAYEQAEKPEEALILFQK------TQQEGLL---SDSVTIVS 216 (680)
Q Consensus 160 ~~~~A~~~f~~~~~--------------~~~~~~~~li~~~~~~g~~~~A~~~~~~------m~~~g~~---p~~~t~~~ 216 (680)
.++.|.++...-.. +|+.--.+....+...|+.++|.++.-+ +.+-+-+ .+..++..
T Consensus 673 MFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~ 752 (1081)
T KOG1538|consen 673 MFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLL 752 (1081)
T ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHH
Confidence 66666666543321 1111112334445556766666655321 1121212 22333333
Q ss_pred HHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 037256 217 VASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEK 274 (680)
Q Consensus 217 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~ 274 (680)
+..-+-+...+..|-++|..+-. ..+++.+....+++++|..+-++.++
T Consensus 753 ~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 753 CATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred HHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCcc
Confidence 33444445555556666654422 13466667777777777777777765
No 222
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.81 E-value=0.32 Score=42.78 Aligned_cols=70 Identities=16% Similarity=0.284 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhc-----CCCcChHHH
Q 037256 382 SWNVLIAGYGMHGHGRKALEFFSQMLEEGVKP-DHITFTSILSACSHAGLIDEGRKCFADMTKL-----SVKPEVKHY 453 (680)
Q Consensus 382 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-----~~~p~~~~~ 453 (680)
....++..+...|++++|+.+.+++.. ..| |...+..++.++...|+..+|.+.|+.+.+. |+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 345567778889999999999999998 455 5568999999999999999999999877542 888887654
No 223
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=94.76 E-value=2.9 Score=37.43 Aligned_cols=47 Identities=19% Similarity=0.084 Sum_probs=20.2
Q ss_pred HHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHH
Q 037256 320 SACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAEN 368 (680)
Q Consensus 320 ~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~ 368 (680)
..+...|....|+.-|+.....- |+...-.-...++.+.|+.++|..
T Consensus 168 R~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 168 RTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHH
Confidence 34444444444444444444332 222222223344555555554433
No 224
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.76 E-value=0.27 Score=50.58 Aligned_cols=207 Identities=14% Similarity=0.153 Sum_probs=117.8
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHccCCHHHHHHHHHHhhhcC--------C
Q 037256 379 NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHI----TFTSILSACSHAGLIDEGRKCFADMTKLS--------V 446 (680)
Q Consensus 379 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~--------~ 446 (680)
+...|+.+..+|.+.|++++|+..|++.++ +.|+.. +|..+..+|.+.|++++|.+.+++..+.+ .
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~~f~~i~~ 151 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNLKFSTILN 151 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcchhHHHHHh
Confidence 577899999999999999999999999999 778854 58999999999999999999999988751 1
Q ss_pred CcCh------HHHHHHHHHHHhcCCHH-----HHHHHHHhC--CCC-CCHhHHHHHHHHHHHHHHHHHHHH---HccCCC
Q 037256 447 KPEV------KHYACMVDMLGRAGCLY-----EAFDMIKQM--PLP-PNDSVWGALLLACRIHGEIAANYL---FQLEPE 509 (680)
Q Consensus 447 ~p~~------~~~~~li~~~~~~g~~~-----~A~~~~~~m--~~~-p~~~~~~~ll~a~~~~~~~~~~~~---~~l~p~ 509 (680)
.|+. .-+..++..+.+.|... .-.++..+. |++ .-...|.++..+-..-+...+-++ +.=.++
T Consensus 152 DpdL~plR~~pef~eLlee~rk~G~~~g~~~~~~~kL~~E~~aPfR~~R~f~y~a~~asa~ig~~i~~~rl~~a~aG~~~ 231 (453)
T PLN03098 152 DPDLAPFRASPEFKELQEEARKGGEDIGSSFRRDLKLISEVQAPFRGVRKFFYVAFTAAAGISTFFTVPRLIRAIQGGDG 231 (453)
T ss_pred CcchhhhcccHHHHHHHHHHHHhCCccCCchhhHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 1221 13445555555555422 223333333 111 022345444444333222222221 111111
Q ss_pred -------------CCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-------CCceeEEEECCEEEEEEe-CCCCCc
Q 037256 510 -------------HTGYFVLMSNIYAASNKWREVGKLREDMKNKGLKK-------PAAFSVIEYGKDIQGFHT-ADRVNP 568 (680)
Q Consensus 510 -------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-------~~~~s~~~~~~~~~~f~~-~~~~~~ 568 (680)
+.+....++.+|....+-+++ ++-+..++..+.. ..-++...+.+..+.++. |+. .
T Consensus 232 ap~l~~~~~nlaI~igav~~f~~L~~~e~k~~e~-q~~ri~Ree~L~rL~v~l~~~~~v~l~~LRg~~RvvIvAG~~--e 308 (453)
T PLN03098 232 APDVLETAGNAAINIGGIVAFVSLFLWENKKEEE-QMSQITRDETLSRLPVRLSTNRIVELVQLRDITRPVILAGTK--E 308 (453)
T ss_pred CccHhHhhcccchHHHHHHHHHHHHHHHhcccHH-HHHHHHhhhhhccceEeccCCCEEeHHHhcCcceEEEEECCH--H
Confidence 123445566666544443333 3333444433211 111222334555565554 433 3
Q ss_pred ccHHHHHHHHHHHHHHHHcCcc
Q 037256 569 YWKEVYKKVESMAVEIKMAGYM 590 (680)
Q Consensus 569 ~~~~i~~~~~~l~~~m~~~g~~ 590 (680)
...+....++.....+.+.|+.
T Consensus 309 ~v~~al~~ae~~r~~L~~r~Vl 330 (453)
T PLN03098 309 SVTLAMQKAERYRTELLKRGVL 330 (453)
T ss_pred HHHHHHHHhHHHHHHHHHcCcE
Confidence 3556666777777888888754
No 225
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.69 E-value=1 Score=47.53 Aligned_cols=158 Identities=15% Similarity=0.147 Sum_probs=87.8
Q ss_pred HHHcCChhHHHHHHHH-HHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHH
Q 037256 287 YIQNGQASEALLLFDE-MQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDT 365 (680)
Q Consensus 287 ~~~~g~~~~A~~~~~~-m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~ 365 (680)
..-.++++++.+..+. -.-..++ ..-...++.-+.+.|-.+.|.++-. |+ ..-.+...++|+++.
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~---------D~---~~rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVT---------DP---DHRFELALQLGNLDI 336 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HHH
T ss_pred HHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcC---------Ch---HHHhHHHHhcCCHHH
Confidence 3445566665554431 1111111 2234555555566666666665532 11 122345567888888
Q ss_pred HHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhcC
Q 037256 366 AENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKLS 445 (680)
Q Consensus 366 A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 445 (680)
|.++-++. .+...|..|.......|+++-|.+.|.+..+ |..|+--|.-.|+.+.-.++.+.....|
T Consensus 337 A~~~a~~~----~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 337 ALEIAKEL----DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHCCCC----STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHhc----CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 88776655 3666888888888888888888888876554 5566666777787777666666665554
Q ss_pred CCcChHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 037256 446 VKPEVKHYACMVDMLGRAGCLYEAFDMIKQMP 477 (680)
Q Consensus 446 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 477 (680)
-++....++.-.|+.++..+++.+.+
T Consensus 404 ------~~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 404 ------DINIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp -------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred ------CHHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 23344444555677777777777664
No 226
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.52 E-value=5.2 Score=46.08 Aligned_cols=91 Identities=24% Similarity=0.322 Sum_probs=52.1
Q ss_pred HHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHccCCHH
Q 037256 355 DMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHI--TFTSILSACSHAGLID 432 (680)
Q Consensus 355 ~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~ 432 (680)
-+|.++|+.++|.+.|.. .|++.+|+.+..+|.. .-|.. +--.|..-+..+++.-
T Consensus 960 l~Ye~~GklekAl~a~~~--------------------~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~ 1016 (1265)
T KOG1920|consen 960 LMYERCGKLEKALKAYKE--------------------CGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHY 1016 (1265)
T ss_pred HHHHHhccHHHHHHHHHH--------------------hccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccch
Confidence 356666666666655544 4677777777666532 11222 1234555666677777
Q ss_pred HHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256 433 EGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM 476 (680)
Q Consensus 433 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 476 (680)
+|-++..+.... | .-.+..|+++-.+++|..+....
T Consensus 1017 eAa~il~e~~sd---~-----~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1017 EAAKILLEYLSD---P-----EEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred hHHHHHHHHhcC---H-----HHHHHHHhhHhHHHHHHHHHHhc
Confidence 776666655432 1 22345566666777777666554
No 227
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.48 E-value=2.2 Score=41.34 Aligned_cols=117 Identities=9% Similarity=0.036 Sum_probs=82.2
Q ss_pred HHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHH--HHH-----H
Q 037256 424 ACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLAC--RIH-----G 496 (680)
Q Consensus 424 a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~--~~~-----~ 496 (680)
.....|+..++..+|+...... +-+...--.|..+|...|+.++|..++..+|.+-...-|..+..-. ..+ -
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 4566777888888777776652 2224455567778888888888888888887555444554422211 111 1
Q ss_pred HHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 037256 497 EIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKG 541 (680)
Q Consensus 497 ~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 541 (680)
...++.-+.-+|+|...-..|+..|...|+.++|.+.+-.+.+++
T Consensus 222 ~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 222 IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 234566677899999999999999999999999999888887654
No 228
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.48 E-value=0.078 Score=40.76 Aligned_cols=59 Identities=14% Similarity=0.259 Sum_probs=32.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhhc----C-CCcC-hHHHHHHHHHHHhcCCHHHHHHHHHh
Q 037256 417 TFTSILSACSHAGLIDEGRKCFADMTKL----S-VKPE-VKHYACMVDMLGRAGCLYEAFDMIKQ 475 (680)
Q Consensus 417 t~~~ll~a~~~~g~~~~a~~~~~~m~~~----~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~ 475 (680)
+++.+...|...|++++|+..|++..+. | -.|+ ..++..+...|.+.|++++|++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4444555555555555555555554432 1 1121 34556666677777777777776654
No 229
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=94.47 E-value=0.18 Score=37.99 Aligned_cols=55 Identities=20% Similarity=0.208 Sum_probs=39.5
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhhhc
Q 037256 388 AGYGMHGHGRKALEFFSQMLEEGVKPDHI-TFTSILSACSHAGLIDEGRKCFADMTKL 444 (680)
Q Consensus 388 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 444 (680)
..|.+.+++++|++.++++.. +.|+.. .+......+...|++++|.+.|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALE--LDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHH--hCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 456777888888888888877 455543 5555666777788888888888777765
No 230
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.33 E-value=6.5 Score=39.57 Aligned_cols=266 Identities=16% Similarity=0.154 Sum_probs=156.9
Q ss_pred CCHhHHHHHHHHHh--ccCChHHHHHHHHHHHHccCCCChhH--HHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHH
Q 037256 209 SDSVTIVSVASAVG--QLGDVLKAQAVHGYAICNAFLEDLCI--QNSIVAMYARCGNVEKARLVFDMMEKR---DLISWN 281 (680)
Q Consensus 209 p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~Li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~ 281 (680)
.|...+..++.+-. -.|+.+.+++-|+.|... |.... ...|.----+.|..+.|...-+..-.. -...|.
T Consensus 116 sDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~ 192 (531)
T COG3898 116 SDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAAR 192 (531)
T ss_pred ccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHH
Confidence 34444444444332 336666666666665431 11111 112222233567777777666655432 345678
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCC-CCCCHh--hHHHHHHHHhh---hcchHHHHHHHHHHHHcCCCCchHHH-HHHH
Q 037256 282 SMLTGYIQNGQASEALLLFDEMQNSD-CKPNPV--TALILVSACTY---LGSRQLGRKFHGYIINSNMKIDATLR-NAVM 354 (680)
Q Consensus 282 ~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~a~~~---~g~~~~a~~i~~~~~~~~~~~~~~~~-~~li 354 (680)
+.+...+..|+|+.|+++++.-+... +.++.. .-..|+.+-+. ..+...|+..-.+..|. .||..-. -.-.
T Consensus 193 AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AA 270 (531)
T COG3898 193 ATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAA 270 (531)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHH
Confidence 88888899999999999888765432 344432 22233333221 12344555555444443 3332211 2234
Q ss_pred HHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCCHH-HHHHHHHHHHccCCHH
Q 037256 355 DMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLE-EGVKPDHI-TFTSILSACSHAGLID 432 (680)
Q Consensus 355 ~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~-t~~~ll~a~~~~g~~~ 432 (680)
.+|.+.|++.++-.+++.+=+.+|.+..|...+ +++.|+ .++.-+++... ..++||.. +-..+..+-...|++.
T Consensus 271 ralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~--~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~ 346 (531)
T COG3898 271 RALFRDGNLRKGSKILETAWKAEPHPDIALLYV--RARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFS 346 (531)
T ss_pred HHHHhccchhhhhhHHHHHHhcCCChHHHHHHH--HhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchH
Confidence 778999999999999999855567666654333 334444 44444444432 12778764 6777778888889998
Q ss_pred HHHHHHHHhhhcCCCcChHHHHHHHHHHHhc-CCHHHHHHHHHhCCCCCCHhHH
Q 037256 433 EGRKCFADMTKLSVKPEVKHYACMVDMLGRA-GCLYEAFDMIKQMPLPPNDSVW 485 (680)
Q Consensus 433 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~p~~~~~ 485 (680)
.|..--+...+ ..|....|..|.+.-... |+-.++..++-+.--.|-...|
T Consensus 347 ~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPaW 398 (531)
T COG3898 347 AARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPAW 398 (531)
T ss_pred HHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCcc
Confidence 88776665554 478888898888876655 9999999998776223333334
No 231
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.28 E-value=0.11 Score=39.81 Aligned_cols=63 Identities=19% Similarity=0.318 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCC---CC-HHHHHHHHHHHHccCCHHHHHHHHHHhhh
Q 037256 381 SSWNVLIAGYGMHGHGRKALEFFSQMLEE--GVK---PD-HITFTSILSACSHAGLIDEGRKCFADMTK 443 (680)
Q Consensus 381 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~---p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 443 (680)
.+|+.+...|...|++++|+..|++..+. ... |+ ..++..+...+...|++++|.+++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35666777777777777777777766642 122 22 23667777778888888888888877653
No 232
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.23 E-value=1.1 Score=48.11 Aligned_cols=117 Identities=16% Similarity=0.181 Sum_probs=78.5
Q ss_pred cCCHHHHHHHHhhcCCCCCCHhHHHHHHH-HHHhcCChHHHHHHHHHHHHcC--C-CCCHHHHHHHHHHHHccCCHHHHH
Q 037256 360 CGDLDTAENMFNDIHPSERNVSSWNVLIA-GYGMHGHGRKALEFFSQMLEEG--V-KPDHITFTSILSACSHAGLIDEGR 435 (680)
Q Consensus 360 ~g~~~~A~~~f~~~~~~~~~~~~~~~li~-~~~~~g~~~~A~~l~~~m~~~g--~-~p~~~t~~~ll~a~~~~g~~~~a~ 435 (680)
....+.|.++++.+...-|+...|.-.-. .+...|+.++|++.|++..... . +.....+--+...+....++++|.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 45778899999988666788777755543 4567889999999998765411 1 112234555566777889999999
Q ss_pred HHHHHhhhc-CCCcChHHHHHHHHHHHhcCCH-------HHHHHHHHhCC
Q 037256 436 KCFADMTKL-SVKPEVKHYACMVDMLGRAGCL-------YEAFDMIKQMP 477 (680)
Q Consensus 436 ~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~-------~~A~~~~~~m~ 477 (680)
+.|..+.+. ...+...+|-. .-++...|+. ++|.++|.+.|
T Consensus 326 ~~f~~L~~~s~WSka~Y~Y~~-a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 326 EYFLRLLKESKWSKAFYAYLA-AACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHhccccHHHHHHHHH-HHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 999999886 33333333322 2345567777 77888887763
No 233
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.09 E-value=2.5 Score=36.78 Aligned_cols=122 Identities=18% Similarity=0.250 Sum_probs=62.7
Q ss_pred HHHHHHHcCCHHHHHHHHhhcCCC-CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 037256 353 VMDMYAKCGDLDTAENMFNDIHPS-ERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLI 431 (680)
Q Consensus 353 li~~y~k~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 431 (680)
++..+.+.+........++.+... ..+....|.++..|++.+ ..+.++.++. .++......++..|.+.+.+
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l~ 85 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKLY 85 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCcH
Confidence 344444444455555555444222 223344555555555442 2233333331 23344455566777777777
Q ss_pred HHHHHHHHHhhhcCCCcChHHHHHHHHHHHhc-CCHHHHHHHHHhCCCCCCHhHHHHHHHHHH
Q 037256 432 DEGRKCFADMTKLSVKPEVKHYACMVDMLGRA-GCLYEAFDMIKQMPLPPNDSVWGALLLACR 493 (680)
Q Consensus 432 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~ 493 (680)
+++..++.++.. |...++.+... ++++.|.+++.+-. +...|..++..|.
T Consensus 86 ~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~~---~~~lw~~~~~~~l 136 (140)
T smart00299 86 EEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQN---NPELWAEVLKALL 136 (140)
T ss_pred HHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhCC---CHHHHHHHHHHHH
Confidence 777777766532 12233333333 77777777777632 5556766665553
No 234
>PRK15331 chaperone protein SicA; Provisional
Probab=94.02 E-value=0.61 Score=41.09 Aligned_cols=39 Identities=10% Similarity=-0.034 Sum_probs=34.0
Q ss_pred HHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 037256 501 NYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKN 539 (680)
Q Consensus 501 ~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 539 (680)
.....++++||..+...+..|...|+.+.|...|+...+
T Consensus 95 ~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 95 AVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 344457788999999999999999999999999998876
No 235
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.74 E-value=11 Score=42.04 Aligned_cols=51 Identities=10% Similarity=0.092 Sum_probs=28.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 037256 386 LIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFAD 440 (680)
Q Consensus 386 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 440 (680)
++..+.+..+.++++.+.+..-.. ++.-|..+|+.+.+.+.++...++..+
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~~----~p~l~~~~L~yF~~~~~i~~~~~~v~~ 761 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGKE----DPSLWLHALKYFVSEESIEDCYEIVYK 761 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCcc----ChHHHHHHHHHHhhhcchhhHHHHHHH
Confidence 344455556666666655544332 555666677777766655554444333
No 236
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.67 E-value=3.2 Score=43.85 Aligned_cols=103 Identities=14% Similarity=0.166 Sum_probs=58.1
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHH
Q 037256 254 AMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRK 333 (680)
Q Consensus 254 ~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 333 (680)
+...++|+++.|.++.++.. +...|..|.....++|+++-|.+.|.+... +..++-.+...|+.+.-.+
T Consensus 326 eLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~k 394 (443)
T PF04053_consen 326 ELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSK 394 (443)
T ss_dssp HHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHH
T ss_pred HHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHH
Confidence 44456677777776655444 455777777777777777777777765542 3444445555666665555
Q ss_pred HHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhc
Q 037256 334 FHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDI 373 (680)
Q Consensus 334 i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~ 373 (680)
+.......|- +|....++.-.|++++..+++.+.
T Consensus 395 l~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 395 LAKIAEERGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 5555554441 233334444456666666665544
No 237
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.59 E-value=0.73 Score=44.07 Aligned_cols=95 Identities=13% Similarity=0.077 Sum_probs=74.4
Q ss_pred hHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCCCCCc----chHHHHHHHHHhCCCchHHHHHHHHHHhCCCC-CC-c
Q 037256 37 LINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKSYS----FLWNTMIRAYANNGHCVETLELYSTMRRSGIS-SN-S 110 (680)
Q Consensus 37 ~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~-~ 110 (680)
.|+.-++.|-. |++..|...|.......|+. -++-.|...+...|++++|...|..+.+.-++ |- +
T Consensus 144 ~Y~~A~~~~ks--------gdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KAp 215 (262)
T COG1729 144 LYNAALDLYKS--------GDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAP 215 (262)
T ss_pred HHHHHHHHHHc--------CCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCCh
Confidence 57877887777 99999999999888887742 35677889999999999999999988764322 21 2
Q ss_pred ccHHHHHHHHhccCChHHHHHHHHHHHHh
Q 037256 111 YTFPFVLKACASNSLILEGKVVHGDIIRT 139 (680)
Q Consensus 111 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 139 (680)
.++.-|.....+.|+.++|...++++++.
T Consensus 216 dallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 216 DALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 45666667778889999999999998886
No 238
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.57 E-value=4.1 Score=35.37 Aligned_cols=83 Identities=19% Similarity=0.213 Sum_probs=38.1
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHhCCCccH
Q 037256 115 FVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEKPEE 194 (680)
Q Consensus 115 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 194 (680)
.++..+...+........++.+++.+ ..++..+|.++..|++.. .++....+.. ..+......+++.+.+.+.+++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~~ 87 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYEE 87 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHHH
Confidence 34444444445555555555555554 244555666666665542 2223333331 1122233334444444455555
Q ss_pred HHHHHHH
Q 037256 195 ALILFQK 201 (680)
Q Consensus 195 A~~~~~~ 201 (680)
+..++.+
T Consensus 88 ~~~l~~k 94 (140)
T smart00299 88 AVELYKK 94 (140)
T ss_pred HHHHHHh
Confidence 5444444
No 239
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.46 E-value=8.1 Score=39.50 Aligned_cols=72 Identities=15% Similarity=0.070 Sum_probs=48.9
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCC---C----hhHHHHHHHHHHh---CCCccHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 037256 150 ALVDMYAKCGQTDDGCKVFDEMSVR---D----LVSWTVMITAYEQ---AEKPEEALILFQKTQQEGLLSDSVTIVSVAS 219 (680)
Q Consensus 150 ~Li~~~~~~g~~~~A~~~f~~~~~~---~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 219 (680)
.|+-.|....+++.-.++.+.+... + ...--...-++-+ .|+.++|++++..+....-.++..||..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444587888888888888887643 1 1112233445555 7888999999888766666777888877766
Q ss_pred HH
Q 037256 220 AV 221 (680)
Q Consensus 220 ~~ 221 (680)
.+
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 55
No 240
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.19 E-value=0.43 Score=45.39 Aligned_cols=102 Identities=11% Similarity=0.136 Sum_probs=70.6
Q ss_pred HHHHHHhhhccCCCCCcchHHHHHHHHHhC-----CCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccC---------
Q 037256 59 NTARSLFNSIHNDKSYSFLWNTMIRAYANN-----GHCVETLELYSTMRRSGISSNSYTFPFVLKACASNS--------- 124 (680)
Q Consensus 59 ~~A~~~f~~~~~~~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~--------- 124 (680)
-.-++.|..++..+-|-.+|-+.+..+... +..+=-...++.|.+.|+.-|..+|+.||+.+-+..
T Consensus 51 v~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~ 130 (406)
T KOG3941|consen 51 VHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQK 130 (406)
T ss_pred cchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHH
Confidence 344566766662222667787777777543 445555667788999999999999999998875533
Q ss_pred -------ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 037256 125 -------LILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQ 160 (680)
Q Consensus 125 -------~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~ 160 (680)
.-+-+..++++|...|+.||..+-..|++++.+.+-
T Consensus 131 ~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 131 VFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 223456777788888888888777777777766553
No 241
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.13 E-value=1.2 Score=45.03 Aligned_cols=119 Identities=13% Similarity=0.156 Sum_probs=76.5
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC------------------CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhh
Q 037256 253 VAMYARCGNVEKARLVFDMMEK------------------RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVT 314 (680)
Q Consensus 253 i~~y~~~g~~~~A~~~f~~m~~------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 314 (680)
.+.|.+.|++..|..-|++... .-..+++.+..+|.+.+++.+|++.-.+.++.+ ++|.-.
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KA 293 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKA 293 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhH
Confidence 3567788888888777776431 123456677778888888888888888887765 566666
Q ss_pred HHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHH-HHHHhhc
Q 037256 315 ALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTA-ENMFNDI 373 (680)
Q Consensus 315 ~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A-~~~f~~~ 373 (680)
+..=..++...|+++.|+..|+.+++.. +.|..+-+.|+.+-.+..+..+. .++|..|
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666677777777777777777776654 33444555555554444443332 4455555
No 242
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.06 E-value=6.5 Score=37.47 Aligned_cols=79 Identities=20% Similarity=0.229 Sum_probs=54.9
Q ss_pred hhhHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCCCC-Ccch---HHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCc
Q 037256 35 SGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKS-YSFL---WNTMIRAYANNGHCVETLELYSTMRRSGISSNS 110 (680)
Q Consensus 35 ~~~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~~p-~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 110 (680)
..+|+.-++-+.+ |++++|.+.|+.+..+.| +..+ --.++-++-+.+++++|+..+++..+.-+.-..
T Consensus 35 ~~LY~~g~~~L~~--------gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n 106 (254)
T COG4105 35 SELYNEGLTELQK--------GNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN 106 (254)
T ss_pred HHHHHHHHHHHhc--------CCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC
Confidence 3556666666666 999999999999988877 3333 334556677889999999999888775444344
Q ss_pred ccHHHHHHHHh
Q 037256 111 YTFPFVLKACA 121 (680)
Q Consensus 111 ~t~~~ll~~~~ 121 (680)
..|..-|.+.+
T Consensus 107 ~dY~~YlkgLs 117 (254)
T COG4105 107 ADYAYYLKGLS 117 (254)
T ss_pred hhHHHHHHHHH
Confidence 55666666655
No 243
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.66 E-value=0.84 Score=43.66 Aligned_cols=89 Identities=12% Similarity=0.109 Sum_probs=47.3
Q ss_pred ccCCHHHHHHHHHHhhhc--CCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHHHHHHHHHHH
Q 037256 427 HAGLIDEGRKCFADMTKL--SVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM-PLPPNDSVWGALLLACRIHGEIAANYL 503 (680)
Q Consensus 427 ~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~a~~~~~~~~~~~~ 503 (680)
..|++..|.+.|..-++. +-.-....+-.|...+...|++++|...|..+ .--|
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P----------------------- 209 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYP----------------------- 209 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCC-----------------------
Confidence 344555555555555554 11122223334556666666666666555544 1111
Q ss_pred HccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 037256 504 FQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNK 540 (680)
Q Consensus 504 ~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 540 (680)
..|.-|+.+.-|+....+.|+.++|..++++..++
T Consensus 210 --~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 210 --KSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred --CCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 13444556666666666666666766666666553
No 244
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.54 E-value=12 Score=37.07 Aligned_cols=158 Identities=9% Similarity=0.001 Sum_probs=79.5
Q ss_pred HHHHHHHHhhhcch---HHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHH
Q 037256 315 ALILVSACTYLGSR---QLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGY 390 (680)
Q Consensus 315 ~~~ll~a~~~~g~~---~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~ 390 (680)
+..+..++...+.. ++|..+.+.+.+. .+..+.++-.-+..+.+.++.+.+.+++.+|..... ....+..++..+
T Consensus 87 L~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i 165 (278)
T PF08631_consen 87 LRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHI 165 (278)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 34444555444433 3344444444322 222344444455666667777777777777744322 334455555444
Q ss_pred ---HhcCChHHHHHHHHHHHHcCCCCCHH-H----HHHHHHHHHccC------CHHHHHHHHHHhhhc-CCCcChHHHHH
Q 037256 391 ---GMHGHGRKALEFFSQMLEEGVKPDHI-T----FTSILSACSHAG------LIDEGRKCFADMTKL-SVKPEVKHYAC 455 (680)
Q Consensus 391 ---~~~g~~~~A~~l~~~m~~~g~~p~~~-t----~~~ll~a~~~~g------~~~~a~~~~~~m~~~-~~~p~~~~~~~ 455 (680)
.. .....|...++.+....+.|... . +...+-...+.+ .++...++++...+. +.+.+..+-.+
T Consensus 166 ~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a 244 (278)
T PF08631_consen 166 KQLAE-KSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASA 244 (278)
T ss_pred HHHHh-hCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 33 23456666776666655555542 1 111111122221 245555566644443 44444444333
Q ss_pred HH-------HHHHhcCCHHHHHHHHH
Q 037256 456 MV-------DMLGRAGCLYEAFDMIK 474 (680)
Q Consensus 456 li-------~~~~~~g~~~~A~~~~~ 474 (680)
+. ....+.+++++|.++++
T Consensus 245 ~~~LLW~~~~~~~~~k~y~~A~~w~~ 270 (278)
T PF08631_consen 245 IHTLLWNKGKKHYKAKNYDEAIEWYE 270 (278)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 33 33456788899988886
No 245
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.33 E-value=21 Score=39.36 Aligned_cols=114 Identities=11% Similarity=0.071 Sum_probs=80.4
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHH
Q 037256 413 PDHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLAC 492 (680)
Q Consensus 413 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~ 492 (680)
-..-|.+--+.-+...|+..+|.++-.+.+ .||...|-.-+.+++..+++++-+++-+++. .+..|.-+..+|
T Consensus 682 f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c 754 (829)
T KOG2280|consen 682 FVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEAC 754 (829)
T ss_pred cccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHHH
Confidence 334456666777888888888888877665 6888888888899999999999888887763 245566677778
Q ss_pred HHHHH-HHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 037256 493 RIHGE-IAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDM 537 (680)
Q Consensus 493 ~~~~~-~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 537 (680)
.+.+. ..+.+.+-.-++.+ -...+|.+.|++.+|.+.--+-
T Consensus 755 ~~~~n~~EA~KYiprv~~l~----ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRVGGLQ----EKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred HhcccHHHHhhhhhccCChH----HHHHHHHHhccHHHHHHHHHHh
Confidence 77632 22333333333322 5778899999999988875543
No 246
>PRK11906 transcriptional regulator; Provisional
Probab=92.33 E-value=3 Score=43.35 Aligned_cols=44 Identities=14% Similarity=0.107 Sum_probs=20.6
Q ss_pred HHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256 432 DEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM 476 (680)
Q Consensus 432 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 476 (680)
.+|.++-++..+.+ +-|......+..++.-.|+++.|..+|++.
T Consensus 321 ~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA 364 (458)
T PRK11906 321 QKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQA 364 (458)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHH
Confidence 34444444444433 334444444444444455555555555544
No 247
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.29 E-value=1.7 Score=42.00 Aligned_cols=119 Identities=8% Similarity=0.009 Sum_probs=50.2
Q ss_pred HHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc---CCh
Q 037256 85 YANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKC---GQT 161 (680)
Q Consensus 85 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~---g~~ 161 (680)
....|++.+|..+|......... +...-..+..++...|+.+.|..+++.+...--........+-|..+.+. ++.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 34445555555555555443222 23334444445555555555555555443221111111111122222222 222
Q ss_pred HHHHHHHhcCCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHc
Q 037256 162 DDGCKVFDEMSVRDLVSWTVMITAYEQAEKPEEALILFQKTQQE 205 (680)
Q Consensus 162 ~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 205 (680)
....+.+..-+ .|...--.+...+...|+.++|++.+-.+...
T Consensus 223 ~~l~~~~aadP-dd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 223 QDLQRRLAADP-DDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 23222222211 13444445556666666666666665555443
No 248
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.15 E-value=2.7 Score=42.60 Aligned_cols=59 Identities=14% Similarity=-0.001 Sum_probs=42.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256 417 TFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM 476 (680)
Q Consensus 417 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 476 (680)
++..+..+|.+.+.+.+|++.-+.....+ ++|+...-.=..+|...|.++.|+..|+++
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka 317 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKA 317 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 45666667788888888888888877765 556655555567777778888887777765
No 249
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.11 E-value=1.8 Score=39.42 Aligned_cols=93 Identities=17% Similarity=0.120 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHhhhc---CCCcCh----HH
Q 037256 382 SWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHI--TFTSILSACSHAGLIDEGRKCFADMTKL---SVKPEV----KH 452 (680)
Q Consensus 382 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~~~p~~----~~ 452 (680)
.+..+..-|.+.|+.++|++.|.++.+....|... .+..++..+...+++..+.....+.... |-.++. ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 45566667777777777777777777665555543 4566677777777777777776666554 111221 22
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC
Q 037256 453 YACMVDMLGRAGCLYEAFDMIKQM 476 (680)
Q Consensus 453 ~~~li~~~~~~g~~~~A~~~~~~m 476 (680)
|..+. +...|++.+|-+.|-..
T Consensus 118 ~~gL~--~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGLA--NLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHH--HHHhchHHHHHHHHHcc
Confidence 22222 23467888888887766
No 250
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=92.10 E-value=19 Score=38.55 Aligned_cols=143 Identities=6% Similarity=0.049 Sum_probs=94.3
Q ss_pred hhhhHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCCCCCcc-hHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCccc
Q 037256 34 TSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKSYSF-LWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYT 112 (680)
Q Consensus 34 ~~~~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 112 (680)
+-..|+.||.--.. . ..++.++.+++.+..+.|... -|-....-=.+.|..+.+.++|++-.. |++.+...
T Consensus 44 ~f~~wt~li~~~~~-~------~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~Svdl 115 (577)
T KOG1258|consen 44 DFDAWTTLIQENDS-I------EDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDL 115 (577)
T ss_pred cccchHHHHhccCc-h------hHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHH
Confidence 44556666643333 3 556778888888888877654 466666666778889999999998876 35556666
Q ss_pred HHHHHHHHh-ccCChHHHHHHHHHHHHh-CCC-CchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHH
Q 037256 113 FPFVLKACA-SNSLILEGKVVHGDIIRT-GFL-SDSYVQAALVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMIT 184 (680)
Q Consensus 113 ~~~ll~~~~-~~~~~~~a~~~~~~~~~~-g~~-~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~ 184 (680)
|...+..+. ..++.+..+..|+..+.. |.. .....|-..|..-..+++......+++++.+--...++..-.
T Consensus 116 W~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~ 190 (577)
T KOG1258|consen 116 WLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFD 190 (577)
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHH
Confidence 666665544 456777788888877664 322 234456667766677788888888888876544444444333
No 251
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.08 E-value=11 Score=35.59 Aligned_cols=44 Identities=20% Similarity=0.454 Sum_probs=23.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHH
Q 037256 249 QNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQ 304 (680)
Q Consensus 249 ~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 304 (680)
++--..+|..+|..+.|-..+++.-+ ...+.++++|+++|++..
T Consensus 94 ~eKAs~lY~E~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqral 137 (308)
T KOG1585|consen 94 YEKASELYVECGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRAL 137 (308)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHH
Confidence 34445566777766666555544321 223445666666665543
No 252
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.06 E-value=20 Score=38.54 Aligned_cols=158 Identities=13% Similarity=0.029 Sum_probs=87.3
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHcC-CCCCH-----hHHHHHHHHHhc----cCChHHHHHHHHHHHHccCCCChhH
Q 037256 179 WTVMITAYEQAEKPEEALILFQKTQQEG-LLSDS-----VTIVSVASAVGQ----LGDVLKAQAVHGYAICNAFLEDLCI 248 (680)
Q Consensus 179 ~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-----~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~ 248 (680)
...+++...=.|+-+.+++++.+-.+.+ +.-.. -+|..++..+.. ..+.+.+.+++..+.+. -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 3344455555677777777776654422 22111 123333333322 34566777777777665 344433
Q ss_pred HH-HHHHHHHhcCCHHHHHHHHHhcCCC-------ChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 037256 249 QN-SIVAMYARCGNVEKARLVFDMMEKR-------DLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVS 320 (680)
Q Consensus 249 ~~-~Li~~y~~~g~~~~A~~~f~~m~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 320 (680)
|. .-...+...|++++|.+.|+..... ....+--+...+.-..+|++|.+.|.++.+.. .....+|.-+..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence 33 2345667778888888888865431 22334445566777788888888888887653 333344444433
Q ss_pred HH-hhhcch-------HHHHHHHHHHH
Q 037256 321 AC-TYLGSR-------QLGRKFHGYII 339 (680)
Q Consensus 321 a~-~~~g~~-------~~a~~i~~~~~ 339 (680)
+| ...++. ++|.+++..+.
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 33 334555 56666665553
No 253
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.96 E-value=23 Score=39.17 Aligned_cols=321 Identities=10% Similarity=0.101 Sum_probs=153.0
Q ss_pred ccCChHHHHHHHHHHHHhCCCC---chhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHhCCCccHHHHH
Q 037256 122 SNSLILEGKVVHGDIIRTGFLS---DSYVQAALVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEKPEEALIL 198 (680)
Q Consensus 122 ~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 198 (680)
+.+.+++|..+-.... |..+ -..++..+|+.+.-.|++++|-...-.|...+..-|--.+..+...++......+
T Consensus 368 ~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~ 445 (846)
T KOG2066|consen 368 EKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPY 445 (846)
T ss_pred HhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhcc
Confidence 3444555554433222 3333 3457788888898999999999999999888888898888888888776543332
Q ss_pred HHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChh
Q 037256 199 FQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLI 278 (680)
Q Consensus 199 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~ 278 (680)
+.......+...|..+|-.+.. . ....+++...+. +++...-...++ ....-+++-.++ ..
T Consensus 446 ---lPt~~~rL~p~vYemvLve~L~-~---~~~~F~e~i~~W--p~~Lys~l~iis---------a~~~q~~q~Se~-~~ 506 (846)
T KOG2066|consen 446 ---LPTGPPRLKPLVYEMVLVEFLA-S---DVKGFLELIKEW--PGHLYSVLTIIS---------ATEPQIKQNSES-TA 506 (846)
T ss_pred ---CCCCCcccCchHHHHHHHHHHH-H---HHHHHHHHHHhC--ChhhhhhhHHHh---------hcchHHHhhccc-hh
Confidence 2221112344556666666654 1 122222222211 111111111111 111111111111 11
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHH-HHHHHHHHcCCCCchHHHHHHHHHH
Q 037256 279 SWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGR-KFHGYIINSNMKIDATLRNAVMDMY 357 (680)
Q Consensus 279 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~-~i~~~~~~~~~~~~~~~~~~li~~y 357 (680)
.-..|...|...+++.+|++++-..+. ++.+++ +. +..-++... ++...|. +..+ ..++++
T Consensus 507 L~e~La~LYl~d~~Y~~Al~~ylklk~----~~vf~l--I~----k~nL~d~i~~~Iv~Lml---l~sk-----ka~~lL 568 (846)
T KOG2066|consen 507 LLEVLAHLYLYDNKYEKALPIYLKLQD----KDVFDL--IK----KHNLFDQIKDQIVLLML---LDSK-----KAIDLL 568 (846)
T ss_pred HHHHHHHHHHHccChHHHHHHHHhccC----hHHHHH--HH----HHhhHHHHHHHHHHHHc---cchh-----hHHHHH
Confidence 222366777777777777777665542 222211 11 001111111 1111110 0000 122222
Q ss_pred HHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhc-----C-ChHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHH
Q 037256 358 AKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMH-----G-HGRKALEFFSQMLEEGVKP-----DHITFTSILSACS 426 (680)
Q Consensus 358 ~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~-----g-~~~~A~~l~~~m~~~g~~p-----~~~t~~~ll~a~~ 426 (680)
....+.-.-.++++++. .++...+..+..+... + -.+..++++.+.....+-| ........+..|.
T Consensus 569 ldn~d~ip~a~Vveql~---~~P~~l~~YL~kl~~rd~~~~~~y~dk~I~LYAEyDrk~LLPFLr~s~~Y~lekA~eiC~ 645 (846)
T KOG2066|consen 569 LDNRDSISPSEVVEQLE---DNPKLLYCYLHKLFKRDHFMGSEYHDKQIELYAEYDRKKLLPFLRKSQNYNLEKALEICS 645 (846)
T ss_pred hhccccCCHHHHHHHHh---cChHHHHHHHHHHhhcCccccchhhhHHHHHHHHHhHhhhhHHHHhcCCCCHHHHHHHHH
Confidence 22222222333343332 1111111111111111 1 1345666666665544333 2223445566666
Q ss_pred ccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHH
Q 037256 427 HAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIH 495 (680)
Q Consensus 427 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~ 495 (680)
+.|-+++-.-++.+|-. ++.+|.-.--+.++.++|.++.++ +.|...|..||+-+..+
T Consensus 646 q~~~~~E~VYlLgrmGn--------~k~AL~lII~el~die~AIefvKe---q~D~eLWe~LI~~~ldk 703 (846)
T KOG2066|consen 646 QKNFYEELVYLLGRMGN--------AKEALKLIINELRDIEKAIEFVKE---QDDSELWEDLINYSLDK 703 (846)
T ss_pred hhCcHHHHHHHHHhhcc--------hHHHHHHHHHHhhCHHHHHHHHHh---cCCHHHHHHHHHHhhcC
Confidence 66666666666666531 333343344455667777776655 45888999999887644
No 254
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=91.87 E-value=11 Score=35.15 Aligned_cols=61 Identities=13% Similarity=0.022 Sum_probs=32.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CChhHHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 037256 246 LCIQNSIVAMYARCGNVEKARLVFDMMEK-----RDLISWNSMLTGYIQNGQASEALLLFDEMQNS 306 (680)
Q Consensus 246 ~~~~~~Li~~y~~~g~~~~A~~~f~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 306 (680)
..........+...+.+..+...+..... .....+......+...+++.++.+.+......
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALAL 124 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcC
Confidence 34445555556666666666555555431 23344444555555555666666666665543
No 255
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.71 E-value=5.6 Score=39.58 Aligned_cols=92 Identities=13% Similarity=0.251 Sum_probs=52.0
Q ss_pred HHHHHHHhhcCCCC-----CCHhHHHHHHHHHHhcCC----hHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHccCC--
Q 037256 364 DTAENMFNDIHPSE-----RNVSSWNVLIAGYGMHGH----GRKALEFFSQMLEEGVKPDHI--TFTSILSACSHAGL-- 430 (680)
Q Consensus 364 ~~A~~~f~~~~~~~-----~~~~~~~~li~~~~~~g~----~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~g~-- 430 (680)
..|..+|+.|.+.. ++...+.+|+.. ..++ .+++..+|+.+.+.|+..+.. ....+|..+.....
T Consensus 120 ~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~ 197 (297)
T PF13170_consen 120 QRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEK 197 (297)
T ss_pred HHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHH
Confidence 34555555554332 233445555443 2222 345667777787777776543 33333333322222
Q ss_pred HHHHHHHHHHhhhcCCCcChHHHHHHH
Q 037256 431 IDEGRKCFADMTKLSVKPEVKHYACMV 457 (680)
Q Consensus 431 ~~~a~~~~~~m~~~~~~p~~~~~~~li 457 (680)
+..+.++++.+.+.|+++...+|..+.
T Consensus 198 v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 198 VARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHcCCccccccccHHH
Confidence 446778888888888888888876654
No 256
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=91.50 E-value=0.89 Score=37.97 Aligned_cols=89 Identities=13% Similarity=0.001 Sum_probs=55.1
Q ss_pred cccCCCChHHHHHHhhhccCCCC-CcchHHHHHHHHHhCCCchHHHHHHHHHHhC-CCCCCcc---cHHHHHHHHhccCC
Q 037256 51 KYTTYGEPNTARSLFNSIHNDKS-YSFLWNTMIRAYANNGHCVETLELYSTMRRS-GISSNSY---TFPFVLKACASNSL 125 (680)
Q Consensus 51 ~~~~~g~~~~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~---t~~~ll~~~~~~~~ 125 (680)
++++.|+++.|++.|.+....-| +...||.-..++.-+|+.++|++-+++..+. |.+ ... .|..--..|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhCc
Confidence 34445888888888877766555 5667888888888888888888877777653 222 111 12222223445566
Q ss_pred hHHHHHHHHHHHHhC
Q 037256 126 ILEGKVVHGDIIRTG 140 (680)
Q Consensus 126 ~~~a~~~~~~~~~~g 140 (680)
.+.|+.=|+...+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 666666666665555
No 257
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=91.36 E-value=0.87 Score=44.55 Aligned_cols=78 Identities=14% Similarity=0.117 Sum_probs=50.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCH
Q 037256 388 AGYGMHGHGRKALEFFSQMLEEGVKP-DHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCL 466 (680)
Q Consensus 388 ~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 466 (680)
.-|.+.|.+++|+..|..-.. +.| |.+++..-..+|.+...+..|..-....+..+ ...+.+|+|.|.-
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--------~~Y~KAYSRR~~A 174 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--------KLYVKAYSRRMQA 174 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--------HHHHHHHHHHHHH
Confidence 346677888888888877666 566 77777777778887777776666555554321 2456677776655
Q ss_pred HHHHHHHHh
Q 037256 467 YEAFDMIKQ 475 (680)
Q Consensus 467 ~~A~~~~~~ 475 (680)
.+++..+.+
T Consensus 175 R~~Lg~~~E 183 (536)
T KOG4648|consen 175 RESLGNNME 183 (536)
T ss_pred HHHHhhHHH
Confidence 555444443
No 258
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.89 E-value=0.92 Score=44.10 Aligned_cols=78 Identities=10% Similarity=0.134 Sum_probs=60.4
Q ss_pred hhhHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCCCC-CcchHHHHHHHHHhCCCchHHHHHHHHHHh-----CCCCC
Q 037256 35 SGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKS-YSFLWNTMIRAYANNGHCVETLELYSTMRR-----SGISS 108 (680)
Q Consensus 35 ~~~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p 108 (680)
.-+...++..|.. | |+.+.+...+++.....| |-..|..++.+|.+.|+...|+..|+++.+ .|+.|
T Consensus 153 ~~~l~~lae~~~~-~------~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P 225 (280)
T COG3629 153 IKALTKLAEALIA-C------GRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDP 225 (280)
T ss_pred HHHHHHHHHHHHh-c------ccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCc
Confidence 3456778888888 8 899999999998888877 778899999999999999999999888754 46666
Q ss_pred CcccHHHHHHH
Q 037256 109 NSYTFPFVLKA 119 (680)
Q Consensus 109 ~~~t~~~ll~~ 119 (680)
...+......+
T Consensus 226 ~~~~~~~y~~~ 236 (280)
T COG3629 226 APELRALYEEI 236 (280)
T ss_pred cHHHHHHHHHH
Confidence 65554444443
No 259
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.88 E-value=0.44 Score=30.12 Aligned_cols=26 Identities=12% Similarity=0.163 Sum_probs=22.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHH
Q 037256 513 YFVLMSNIYAASNKWREVGKLREDMK 538 (680)
Q Consensus 513 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 538 (680)
++..|+++|.+.|+|++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46789999999999999999999954
No 260
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=90.63 E-value=32 Score=38.37 Aligned_cols=70 Identities=27% Similarity=0.289 Sum_probs=43.3
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCCh-------HHHHHHHHHHHHhCCCCchh
Q 037256 75 SFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLI-------LEGKVVHGDIIRTGFLSDSY 146 (680)
Q Consensus 75 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~-------~~a~~~~~~~~~~g~~~~~~ 146 (680)
...| ++|-.+.|.|.+++|.++..+.... .......|...+..+....+- +....-+.+.++.....|++
T Consensus 112 ~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 112 DPIW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp EEHH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred CccH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 3455 5777889999999999999665543 455667788889988765332 34445555555544333554
No 261
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.56 E-value=3.7 Score=40.32 Aligned_cols=152 Identities=18% Similarity=0.099 Sum_probs=95.5
Q ss_pred hCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHh---CCCCchhHHHHHHHHHHhcCChHH
Q 037256 87 NNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRT---GFLSDSYVQAALVDMYAKCGQTDD 163 (680)
Q Consensus 87 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---g~~~~~~~~~~Li~~~~~~g~~~~ 163 (680)
-+|+..+|-..++++.+. .+.|...+...=.+|.-.|+...-+..++.++.. +++-..++...+.-++..+|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 467778888888888765 3447777777777888888888888888777654 222122333333344557888888
Q ss_pred HHHHHhcCCCC---ChhHHHHHHHHHHhCCCccHHHHHHHHHHHc---CCCCCHhHHHHHHHHHhccCChHHHHHHHHHH
Q 037256 164 GCKVFDEMSVR---DLVSWTVMITAYEQAEKPEEALILFQKTQQE---GLLSDSVTIVSVASAVGQLGDVLKAQAVHGYA 237 (680)
Q Consensus 164 A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 237 (680)
|++.-++..+- |..+-.+....+--+|+..++.++..+-... +-..-...|-...-.+...+.++.|+++|+.-
T Consensus 194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHH
Confidence 88888876654 3344456666677788888888876553221 10111122333344455568888888888765
Q ss_pred HH
Q 037256 238 IC 239 (680)
Q Consensus 238 ~~ 239 (680)
+-
T Consensus 274 i~ 275 (491)
T KOG2610|consen 274 IW 275 (491)
T ss_pred HH
Confidence 43
No 262
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.48 E-value=16 Score=34.54 Aligned_cols=25 Identities=4% Similarity=-0.000 Sum_probs=14.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHH
Q 037256 280 WNSMLTGYIQNGQASEALLLFDEMQ 304 (680)
Q Consensus 280 ~~~li~~~~~~g~~~~A~~~~~~m~ 304 (680)
|.--..+|-...++++|...+.+..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHH
Confidence 4444455666666666666555544
No 263
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.12 E-value=5.1 Score=35.29 Aligned_cols=121 Identities=12% Similarity=0.091 Sum_probs=67.9
Q ss_pred hHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCCCCCcchHHH-HHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHH
Q 037256 37 LINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKSYSFLWNT-MIRAYANNGHCVETLELYSTMRRSGISSNSYTFPF 115 (680)
Q Consensus 37 ~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 115 (680)
+.+.|+..... . .+.++.+++..+++.+.-.+|....... -...+.+.|++.+|+.+|+++.+.+ |....-..
T Consensus 9 iv~gLie~~~~-a---l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kA 82 (160)
T PF09613_consen 9 IVGGLIEVLSV-A---LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKA 82 (160)
T ss_pred HHHHHHHHHHH-H---HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHH
Confidence 34455555443 2 3338999999999998877775443322 2334678899999999999987653 33333344
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHH
Q 037256 116 VLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCK 166 (680)
Q Consensus 116 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~ 166 (680)
|+..|.....-..=+..-++++..+-.|+. ..|+..+....+...|..
T Consensus 83 LlA~CL~~~~D~~Wr~~A~evle~~~d~~a---~~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 83 LLALCLYALGDPSWRRYADEVLESGADPDA---RALVRALLARADLEPAHE 130 (160)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhcCCChHH---HHHHHHHHHhccccchhh
Confidence 444444333323333333445555533433 234444444444444433
No 264
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.97 E-value=2.3 Score=41.40 Aligned_cols=78 Identities=13% Similarity=0.226 Sum_probs=58.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCHHHHHH
Q 037256 347 ATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLE-----EGVKPDHITFTS 420 (680)
Q Consensus 347 ~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~~ 420 (680)
..++..++..+..+|+.+.+.+.++++....| +...|..+|.+|.+.|+...|+..|+++.. .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 34566778888888888888888888855544 677888899999999998888888888765 467776666555
Q ss_pred HHHH
Q 037256 421 ILSA 424 (680)
Q Consensus 421 ll~a 424 (680)
...+
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4444
No 265
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.80 E-value=3.3 Score=40.68 Aligned_cols=154 Identities=11% Similarity=0.108 Sum_probs=97.3
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHH----HHHHHHHHhcCCHH
Q 037256 392 MHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHY----ACMVDMLGRAGCLY 467 (680)
Q Consensus 392 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~----~~li~~~~~~g~~~ 467 (680)
-.|+..+|-..++++.+. .+-|...+.-.=.+|...|+.+.-...++++... ..|+...| ..+.-++..+|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 478888999999999885 5556678887888999999999999999888764 13444333 34445566899999
Q ss_pred HHHHHHHhC-CCCCCHhHHHH--HHHHHHHHHH-HHHHHHHccCCCC--------CchHHHHHHHHHhcCChhHHHHHHH
Q 037256 468 EAFDMIKQM-PLPPNDSVWGA--LLLACRIHGE-IAANYLFQLEPEH--------TGYFVLMSNIYAASNKWREVGKLRE 535 (680)
Q Consensus 468 ~A~~~~~~m-~~~p~~~~~~~--ll~a~~~~~~-~~~~~~~~l~p~~--------~~~~~~l~~~~~~~g~~~~A~~~~~ 535 (680)
+|++.-++. .+.|.. .|.+ +-...-..|+ +...++.+...++ .-.|-..+-.|...+.++.|+++++
T Consensus 193 dAEk~A~ralqiN~~D-~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQINRFD-CWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCCCcc-hHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 999999886 555432 2322 2211111111 1112222211111 1223345555677799999999999
Q ss_pred HHHhCCCCCCCce
Q 037256 536 DMKNKGLKKPAAF 548 (680)
Q Consensus 536 ~m~~~g~~~~~~~ 548 (680)
.=.-+.+.++.+.
T Consensus 272 ~ei~k~l~k~Da~ 284 (491)
T KOG2610|consen 272 REIWKRLEKDDAV 284 (491)
T ss_pred HHHHHHhhccchh
Confidence 8766666666553
No 266
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=89.78 E-value=11 Score=31.80 Aligned_cols=63 Identities=13% Similarity=0.241 Sum_probs=39.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCC
Q 037256 280 WNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNM 343 (680)
Q Consensus 280 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~ 343 (680)
.+.-+.....+|+-+.-.++++++.+.+ .+++.....+..||.+.|+..++.+++..+-+.|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3445666777777777777777776533 66777777777778888877777777777766664
No 267
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=89.73 E-value=4.4 Score=34.97 Aligned_cols=67 Identities=12% Similarity=0.178 Sum_probs=51.9
Q ss_pred CChHHHHHHhhhccCCCC-Cc---chHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhc
Q 037256 56 GEPNTARSLFNSIHNDKS-YS---FLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACAS 122 (680)
Q Consensus 56 g~~~~A~~~f~~~~~~~p-~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 122 (680)
|++++|.+.|+.+..+.| +. .+--.++.+|.+++++++|+..+++.++..+.--..-|...+.+++.
T Consensus 24 ~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 24 GNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred CCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 999999999999988866 32 24456788899999999999999999887655445567777766554
No 268
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=89.66 E-value=33 Score=36.92 Aligned_cols=406 Identities=9% Similarity=0.018 Sum_probs=201.0
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCccc-HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 037256 74 YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYT-FPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALV 152 (680)
Q Consensus 74 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li 152 (680)
+...|+.+|..--+....+.+...+..++.. .|..+- |.....-=.+.|..+.+..+|++-+. |++.+...|...+
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHH
Confidence 5567888887665555566677777777754 344332 22222223467888889999998876 4566777777766
Q ss_pred HHHH-hcCChHHHHHHHhcCCC------CChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHH---h
Q 037256 153 DMYA-KCGQTDDGCKVFDEMSV------RDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAV---G 222 (680)
Q Consensus 153 ~~~~-~~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~---~ 222 (680)
.... ..|+.+..++.|+.... .....|...|.--..++++.....+|++.++... .-|+....-+ .
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~----~~~~~~f~~f~~~l 196 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPL----HQLNRHFDRFKQLL 196 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhh----hHhHHHHHHHHHHH
Confidence 6554 45677777777876543 3556788888888888889999999998876421 1111111111 1
Q ss_pred cc------CChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhc-CCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhH
Q 037256 223 QL------GDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARC-GNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASE 295 (680)
Q Consensus 223 ~~------~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~-g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~ 295 (680)
+. ...++..++-....... .-... ...+.-....+....+. +..++
T Consensus 197 ~~~~~~~l~~~d~~~~l~~~~~~~~-------------~~~~~~~~~e~~~~~v~~~~~~s--------------~~l~~ 249 (577)
T KOG1258|consen 197 NQNEEKILLSIDELIQLRSDVAERS-------------KITHSQEPLEELEIGVKDSTDPS--------------KSLTE 249 (577)
T ss_pred hcCChhhhcCHHHHHHHhhhHHhhh-------------hcccccChhHHHHHHHhhccCcc--------------chhhH
Confidence 11 11111111111111000 00000 00111111111111110 00111
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHc-------CCCCchHHHHHHHHHHHHcCCHHHHHH
Q 037256 296 ALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINS-------NMKIDATLRNAVMDMYAKCGDLDTAEN 368 (680)
Q Consensus 296 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~-------~~~~~~~~~~~li~~y~k~g~~~~A~~ 368 (680)
+.....+... .--.++...-.....+..++.-++. -..++..+|...++.-.+.|+.+.+.-
T Consensus 250 ~~~~l~~~~~-----------~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~ 318 (577)
T KOG1258|consen 250 EKTILKRIVS-----------IHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFI 318 (577)
T ss_pred HHHHHHHHHH-----------HHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHH
Confidence 1110000000 0000000111111111222222221 112345667777777778888888888
Q ss_pred HHhhcCCC-CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCC
Q 037256 369 MFNDIHPS-ERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKLSVK 447 (680)
Q Consensus 369 ~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 447 (680)
.|++..-+ ..=...|--.+.-.-..|+.+-|..++....+--++-...+-..-..-+-..|+++.|..+++...+.-
T Consensus 319 l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~-- 396 (577)
T KOG1258|consen 319 LFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY-- 396 (577)
T ss_pred HHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--
Confidence 88877211 111234444444444447777777666665553222222222111223456778888888888887752
Q ss_pred cCh-HHHHHHHHHHHhcCCHHHHH---HHHHhC-CCCCCHhHHHHHHHHHH-------HH---HHHHHHHHHccCCCCCc
Q 037256 448 PEV-KHYACMVDMLGRAGCLYEAF---DMIKQM-PLPPNDSVWGALLLACR-------IH---GEIAANYLFQLEPEHTG 512 (680)
Q Consensus 448 p~~-~~~~~li~~~~~~g~~~~A~---~~~~~m-~~~p~~~~~~~ll~a~~-------~~---~~~~~~~~~~l~p~~~~ 512 (680)
|+. ..-..-+....|.|..+.+. +++... +.+-+......+.--+. .. |...+.++.+..|++..
T Consensus 397 pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~ 476 (577)
T KOG1258|consen 397 PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKV 476 (577)
T ss_pred CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHH
Confidence 332 22223345566777777776 444443 22222222222222221 11 45556677778888888
Q ss_pred hHHHHHHHHHhcCC
Q 037256 513 YFVLMSNIYAASNK 526 (680)
Q Consensus 513 ~~~~l~~~~~~~g~ 526 (680)
.|..+.+.....+.
T Consensus 477 ~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 477 LYLELIRFELIQPS 490 (577)
T ss_pred HHHHHHHHHHhCCc
Confidence 88888877665553
No 269
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.49 E-value=15 Score=32.82 Aligned_cols=133 Identities=11% Similarity=0.060 Sum_probs=76.6
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcC--CHHHHHHHHHhcC
Q 037256 196 LILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCG--NVEKARLVFDMME 273 (680)
Q Consensus 196 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g--~~~~A~~~f~~m~ 273 (680)
++..+.+.+.+++|+...+..++..+.+.|.+..-.+ ++..++-+|.......+-.+.... -..-|.+.+.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 3556666677888888888888888888887654433 344444444443333322222111 1233344444433
Q ss_pred CCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHH
Q 037256 274 KRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIIN 340 (680)
Q Consensus 274 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~ 340 (680)
..+..++..+...|++-+|+++.++.... +......++.+..+.++...--.+++....
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 24566777888999999999888775322 222334556666666666555555555544
No 270
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=89.13 E-value=21 Score=35.78 Aligned_cols=164 Identities=9% Similarity=0.055 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHh-CCCCCC---HhhHHHHHHHHhhhcchHHHHHHHHHHHHcC-----CCCchHH
Q 037256 279 SWNSMLTGYIQNGQASEALLLFDEMQN-SDCKPN---PVTALILVSACTYLGSRQLGRKFHGYIINSN-----MKIDATL 349 (680)
Q Consensus 279 ~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~---~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~-----~~~~~~~ 349 (680)
+|-.+..++-+.-++.+++.+-..-.. .|..|. .....++-.++...+.++++.+.|+...+.- -.....+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 444455555555555555554433221 122221 1233446667777888888888888776532 1234567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhcCCC----C-CCHh------HHHHHHHHHHhcCChHHHHHHHHHHHH----cCCCCC
Q 037256 350 RNAVMDMYAKCGDLDTAENMFNDIHPS----E-RNVS------SWNVLIAGYGMHGHGRKALEFFSQMLE----EGVKPD 414 (680)
Q Consensus 350 ~~~li~~y~k~g~~~~A~~~f~~~~~~----~-~~~~------~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~ 414 (680)
+.+|...|.+..++++|.-...+..+. . .|.. +.-.|..++...|....|.+.-++..+ .|-+|-
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 888888898888888876555443111 1 2221 223455567777887777777766543 343333
Q ss_pred H-HHHHHHHHHHHccCCHHHHHHHHHHhh
Q 037256 415 H-ITFTSILSACSHAGLIDEGRKCFADMT 442 (680)
Q Consensus 415 ~-~t~~~ll~a~~~~g~~~~a~~~~~~m~ 442 (680)
. .....+.+.|-..|+.+.|+.-++...
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2 244556667777888888777766544
No 271
>PRK11906 transcriptional regulator; Provisional
Probab=89.03 E-value=24 Score=36.88 Aligned_cols=110 Identities=15% Similarity=0.121 Sum_probs=65.3
Q ss_pred HHHHHHHHhhcCCC-CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHH
Q 037256 363 LDTAENMFNDIHPS-ERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHI-TFTSILSACSHAGLIDEGRKCFAD 440 (680)
Q Consensus 363 ~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~ 440 (680)
..+|.+.-++..+. ..|......+..+....++++.|..+|++... +.||.. +|......+...|+.++|.+.+++
T Consensus 320 ~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 320 AQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34455555555333 33556666666666666778888888888777 677764 555555556667888888888877
Q ss_pred hhhc-CCCcChHHHHHHHHHHHhcCCHHHHHHHHHh
Q 037256 441 MTKL-SVKPEVKHYACMVDMLGRAGCLYEAFDMIKQ 475 (680)
Q Consensus 441 m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 475 (680)
..+. ....-.......++.|... .+++|..++-+
T Consensus 398 alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 398 SLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLYYK 432 (458)
T ss_pred HhccCchhhHHHHHHHHHHHHcCC-chhhhHHHHhh
Confidence 6554 2222233333445566544 45666666543
No 272
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=88.74 E-value=33 Score=36.12 Aligned_cols=57 Identities=18% Similarity=0.134 Sum_probs=32.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCC-C-HHHHHHHHHHHHccCCHHHHHHHHHHhh
Q 037256 385 VLIAGYGMHGHGRKALEFFSQMLEEGVKP-D-HITFTSILSACSHAGLIDEGRKCFADMT 442 (680)
Q Consensus 385 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 442 (680)
.+..+.-+.|+.++|++.|++|.+.. ++ | ....-.|+.++...+.+.++..++.+--
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~-p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEF-PNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhC-CccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 34445556667777777776666532 12 1 1244556666666666666666666643
No 273
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=88.64 E-value=14 Score=31.30 Aligned_cols=83 Identities=10% Similarity=0.177 Sum_probs=45.0
Q ss_pred cCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 037256 360 CGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFA 439 (680)
Q Consensus 360 ~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 439 (680)
||++......+-.+ ..+....+.-+......|+-++-.+++.++... -+|++.....+..||.+.|+..++.+++.
T Consensus 69 C~NlKrVi~C~~~~---n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~ 144 (161)
T PF09205_consen 69 CGNLKRVIECYAKR---NKLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLK 144 (161)
T ss_dssp -S-THHHHHHHHHT---T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred hcchHHHHHHHHHh---cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHH
Confidence 44444444444333 223333445566666777777777777776642 46666777777777888888777777777
Q ss_pred HhhhcCC
Q 037256 440 DMTKLSV 446 (680)
Q Consensus 440 ~m~~~~~ 446 (680)
+.-+.|+
T Consensus 145 ~ACekG~ 151 (161)
T PF09205_consen 145 EACEKGL 151 (161)
T ss_dssp HHHHTT-
T ss_pred HHHHhch
Confidence 7777664
No 274
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.59 E-value=47 Score=37.29 Aligned_cols=109 Identities=13% Similarity=0.119 Sum_probs=60.6
Q ss_pred HHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHH
Q 037256 85 YANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDG 164 (680)
Q Consensus 85 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A 164 (680)
+.+.|++++|..-|-+-... +.| ..+++-+.....+.+-..+++.+.+.|+.. ...-+.|+.+|.+.++.+.-
T Consensus 378 Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla~-~dhttlLLncYiKlkd~~kL 450 (933)
T KOG2114|consen 378 LYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLAN-SDHTTLLLNCYIKLKDVEKL 450 (933)
T ss_pred HHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHccccc-chhHHHHHHHHHHhcchHHH
Confidence 44567777777777655432 222 234455555555555666677777777543 33335677788888877777
Q ss_pred HHHHhcCCCCChh-HHHHHHHHHHhCCCccHHHHHHH
Q 037256 165 CKVFDEMSVRDLV-SWTVMITAYEQAEKPEEALILFQ 200 (680)
Q Consensus 165 ~~~f~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~ 200 (680)
.+..+........ -....+..+.+.+-.++|.-+-.
T Consensus 451 ~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~ 487 (933)
T KOG2114|consen 451 TEFISKCDKGEWFFDVETALEILRKSNYLDEAELLAT 487 (933)
T ss_pred HHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHH
Confidence 7766665522111 13344444555555555544433
No 275
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=88.55 E-value=4.9 Score=33.75 Aligned_cols=90 Identities=23% Similarity=0.267 Sum_probs=51.5
Q ss_pred HHHHcCCHHHHHHHHhhcCCC-CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCC--HHHHHHHHHHHHccCCH
Q 037256 356 MYAKCGDLDTAENMFNDIHPS-ERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEE-GVKPD--HITFTSILSACSHAGLI 431 (680)
Q Consensus 356 ~y~k~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~--~~t~~~ll~a~~~~g~~ 431 (680)
+.+..|+++.|++.|.+.... ..+...||.-..++.-.|+.++|++=+++..+. |-+-- ...|..-...|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 455667777777777765333 245666777777777777777777777766653 21100 01233333344555666
Q ss_pred HHHHHHHHHhhhcC
Q 037256 432 DEGRKCFADMTKLS 445 (680)
Q Consensus 432 ~~a~~~~~~m~~~~ 445 (680)
+.|..-|+...+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 66666666555443
No 276
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=88.26 E-value=37 Score=35.76 Aligned_cols=194 Identities=15% Similarity=0.149 Sum_probs=128.3
Q ss_pred hHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHH
Q 037256 37 LINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKSYSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFV 116 (680)
Q Consensus 37 ~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 116 (680)
+-|+++..|.. |-+....+.+ |-...-+++..+.++-...-...+..+|...| -+...|..+
T Consensus 44 ~k~si~~lyis--------g~~~~s~~~l--------~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el 105 (711)
T COG1747 44 SKNSIIALYIS--------GIISLSKQLL--------DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLEL 105 (711)
T ss_pred hhhhhHHHHHH--------HHHHhhhccc--------cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHH
Confidence 45666666665 5443333322 44556778888988888888888889998865 467788999
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC------Ch---hHHHHHHHHHH
Q 037256 117 LKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVR------DL---VSWTVMITAYE 187 (680)
Q Consensus 117 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~~------~~---~~~~~li~~~~ 187 (680)
++.|... .-++-..+++++++..+ .|++....|..-|-+ ++...+...|..+..+ +. ..|..|+..-
T Consensus 106 ~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i- 181 (711)
T COG1747 106 LQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI- 181 (711)
T ss_pred HHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc-
Confidence 9999888 55677888998888764 455666667777766 8888888888765422 11 1566665422
Q ss_pred hCCCccHHHHHHHHHHH-cCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHH
Q 037256 188 QAEKPEEALILFQKTQQ-EGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVA 254 (680)
Q Consensus 188 ~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 254 (680)
..+.+.-+.+..+... .|..--.+.+..+-.-|....++.++.+++..+.+.. ..|......++.
T Consensus 182 -~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~ 247 (711)
T COG1747 182 -GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHD-EKDVWARKEIIE 247 (711)
T ss_pred -cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhc-chhhhHHHHHHH
Confidence 2345555555555543 2444455666667777888888888888888777765 334444444443
No 277
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=88.19 E-value=1.1 Score=27.58 Aligned_cols=32 Identities=31% Similarity=0.513 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 037256 381 SSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPD 414 (680)
Q Consensus 381 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 414 (680)
.+|..+...|...|++++|+..|++.++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 3566777777777777777777777776 4554
No 278
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=88.15 E-value=35 Score=35.39 Aligned_cols=37 Identities=11% Similarity=0.308 Sum_probs=30.8
Q ss_pred HHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHH
Q 037256 501 NYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMK 538 (680)
Q Consensus 501 ~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 538 (680)
..+.++.| ++.+|.+++-.+....++++|..++..+.
T Consensus 486 ~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 486 SWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 44566788 68899999999999999999999988764
No 279
>PRK09687 putative lyase; Provisional
Probab=88.09 E-value=29 Score=34.31 Aligned_cols=76 Identities=13% Similarity=0.149 Sum_probs=43.2
Q ss_pred CCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037256 344 KIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILS 423 (680)
Q Consensus 344 ~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 423 (680)
.++..+-...+.++++.|+.+-...+.+.+ ..++ ..-..+.++...|.. +|+..+.++.+. .||...-...+.
T Consensus 203 D~~~~VR~~A~~aLg~~~~~~av~~Li~~L--~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~ 275 (280)
T PRK09687 203 DKNEEIRIEAIIGLALRKDKRVLSVLIKEL--KKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAID 275 (280)
T ss_pred CCChHHHHHHHHHHHccCChhHHHHHHHHH--cCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHH
Confidence 345556666666677766643333333333 2233 233566777777775 677777777763 456665555555
Q ss_pred HHH
Q 037256 424 ACS 426 (680)
Q Consensus 424 a~~ 426 (680)
+|.
T Consensus 276 a~~ 278 (280)
T PRK09687 276 KLK 278 (280)
T ss_pred HHh
Confidence 554
No 280
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=88.03 E-value=19 Score=36.10 Aligned_cols=24 Identities=13% Similarity=0.247 Sum_probs=17.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHH
Q 037256 514 FVLMSNIYAASNKWREVGKLREDM 537 (680)
Q Consensus 514 ~~~l~~~~~~~g~~~~A~~~~~~m 537 (680)
...++++|-..|+.+.|..-++..
T Consensus 249 ~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 249 LLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHhcccHhHHHHHHHHH
Confidence 346888888888888777666653
No 281
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=87.98 E-value=61 Score=37.96 Aligned_cols=91 Identities=23% Similarity=0.268 Sum_probs=53.2
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhh--HHHHHHHHhhhcchHHH
Q 037256 254 AMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVT--ALILVSACTYLGSRQLG 331 (680)
Q Consensus 254 ~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~a~~~~g~~~~a 331 (680)
-+|.++|+.++|.+. |...|+|.+|+.+-.+|... -|... -..|.+-+...++.-+|
T Consensus 960 l~Ye~~GklekAl~a------------------~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eA 1018 (1265)
T KOG1920|consen 960 LMYERCGKLEKALKA------------------YKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEA 1018 (1265)
T ss_pred HHHHHhccHHHHHHH------------------HHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhH
Confidence 356677777777654 45678888888887776532 22222 13455555666666555
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhc
Q 037256 332 RKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDI 373 (680)
Q Consensus 332 ~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~ 373 (680)
-++..+.... | .-.+..|++...+++|.++-...
T Consensus 1019 a~il~e~~sd---~-----~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1019 AKILLEYLSD---P-----EEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHhcC---H-----HHHHHHHhhHhHHHHHHHHHHhc
Confidence 5555444321 1 23445667777777777776554
No 282
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=87.89 E-value=0.59 Score=31.10 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=14.6
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHhC
Q 037256 78 WNTMIRAYANNGHCVETLELYSTMRRS 104 (680)
Q Consensus 78 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 104 (680)
|..+...|.+.|++++|.++|++..+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445555555555555555555555543
No 283
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.60 E-value=4.9 Score=39.17 Aligned_cols=100 Identities=15% Similarity=0.292 Sum_probs=73.0
Q ss_pred cCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCC-----CC--CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 037256 341 SNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPS-----ER--NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKP 413 (680)
Q Consensus 341 ~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~-----~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 413 (680)
.|.+....+...++..-....+++++...+-++... .| ...+|-.++. .-++++++.++..=++-|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhcccc
Confidence 344555555566666666677888888887776322 12 2344444443 346779999999889999999
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHhhhc
Q 037256 414 DHITFTSILSACSHAGLIDEGRKCFADMTKL 444 (680)
Q Consensus 414 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 444 (680)
|..|++.+++.+.+.+++.+|.++...|+..
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999999999888777665
No 284
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=87.57 E-value=53 Score=36.77 Aligned_cols=192 Identities=8% Similarity=-0.011 Sum_probs=103.4
Q ss_pred hhhhHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCCCCCcchHHHHHHHHH-hCCCchHHHHHHHHHHhCCCCCCcc-
Q 037256 34 TSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKSYSFLWNTMIRAYA-NNGHCVETLELYSTMRRSGISSNSY- 111 (680)
Q Consensus 34 ~~~~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~- 111 (680)
++--|-.||.+-.+ | ++.+.+-|.--|.. +..++-.+...+. ...++++|...+++....--+++-.
T Consensus 29 ~l~~Y~kLI~~ai~-C--------L~~~~~~~~l~p~~--ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d 97 (608)
T PF10345_consen 29 QLKQYYKLIATAIK-C--------LEAVLKQFKLSPRQ--EARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTD 97 (608)
T ss_pred hHHHHHHHHHHHHH-H--------HHHHhccCCCCHHH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 44556666666666 6 33332211111111 4566777777776 5788999999998775433222211
Q ss_pred ----cHHHHHHHHhccCChHHHHHHHHHHHHhCCC----CchhHHHHH-HHHHHhcCChHHHHHHHhcCCC-----CC--
Q 037256 112 ----TFPFVLKACASNSLILEGKVVHGDIIRTGFL----SDSYVQAAL-VDMYAKCGQTDDGCKVFDEMSV-----RD-- 175 (680)
Q Consensus 112 ----t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~----~~~~~~~~L-i~~~~~~g~~~~A~~~f~~~~~-----~~-- 175 (680)
.-..++..+.+.+... |....+..++.--. +-...+.-+ +..+...++...|.+.++.+.. .|
T Consensus 98 ~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~ 176 (608)
T PF10345_consen 98 LKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPA 176 (608)
T ss_pred HHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHH
Confidence 1123344455554444 88888877654211 222233333 2333334788888888876642 12
Q ss_pred hhHHHHHHHHH--HhCCCccHHHHHHHHHHHcCC---------CCCHhHHHHHHHHHh--ccCChHHHHHHHHHH
Q 037256 176 LVSWTVMITAY--EQAEKPEEALILFQKTQQEGL---------LSDSVTIVSVASAVG--QLGDVLKAQAVHGYA 237 (680)
Q Consensus 176 ~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~---------~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~ 237 (680)
+..+-.++.+. .+.+.++++++...++..... .|-..+|..++..++ ..|+++.+.+....+
T Consensus 177 ~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 177 VFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 23333444443 344667778888777743221 234556666776654 456666666554443
No 285
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=87.35 E-value=1.7 Score=28.90 Aligned_cols=27 Identities=22% Similarity=0.426 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 037256 382 SWNVLIAGYGMHGHGRKALEFFSQMLE 408 (680)
Q Consensus 382 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 408 (680)
+|..+...|...|++++|.++|++.++
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555555666666666666666655
No 286
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=87.19 E-value=33 Score=33.93 Aligned_cols=101 Identities=13% Similarity=0.108 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHcCCHH---HHHHHHhhcCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037256 348 TLRNAVMDMYAKCGDLD---TAENMFNDIHPSERN-VSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILS 423 (680)
Q Consensus 348 ~~~~~li~~y~k~g~~~---~A~~~f~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 423 (680)
.+...++.+|...+..+ +|.++.+.+....|+ +..+-.-+..+.+.++.+++.+.+.+|+.. +.-....|..++.
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~l~ 163 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHHHH
Confidence 45566677777666544 445555555333444 333333444555577778888888888775 2212233444444
Q ss_pred HH---HccCCHHHHHHHHHHhhhcCCCcCh
Q 037256 424 AC---SHAGLIDEGRKCFADMTKLSVKPEV 450 (680)
Q Consensus 424 a~---~~~g~~~~a~~~~~~m~~~~~~p~~ 450 (680)
.. .. .....+...++.+....+.|..
T Consensus 164 ~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 164 HIKQLAE-KSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHh-hCcHHHHHHHHHHHHHHhCCCh
Confidence 33 33 2234555555555555344444
No 287
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=87.16 E-value=14 Score=31.89 Aligned_cols=52 Identities=12% Similarity=0.057 Sum_probs=28.3
Q ss_pred HHccCCHHHHHHHHHHhhhc-CC-CcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256 425 CSHAGLIDEGRKCFADMTKL-SV-KPEVKHYACMVDMLGRAGCLYEAFDMIKQM 476 (680)
Q Consensus 425 ~~~~g~~~~a~~~~~~m~~~-~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 476 (680)
..+.|++++|.+.|+.+... .. +-....--.++.+|.+.|++++|...+++.
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rF 73 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRF 73 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 34456666666666666655 11 222333445566666666666666555543
No 288
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=87.15 E-value=15 Score=36.62 Aligned_cols=61 Identities=5% Similarity=-0.057 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHhCCCCCC-H-hhHHHHHHHHhhhcc--hHHHHHHHHHHHHcCCCCchHHHHHHH
Q 037256 294 SEALLLFDEMQNSDCKPN-P-VTALILVSACTYLGS--RQLGRKFHGYIINSNMKIDATLRNAVM 354 (680)
Q Consensus 294 ~~A~~~~~~m~~~g~~p~-~-~t~~~ll~a~~~~g~--~~~a~~i~~~~~~~~~~~~~~~~~~li 354 (680)
+++..+|+.+.+.|...+ . ...+.++..+..... ...+..+++.+.+.|+++....|..+.
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 455666666666665543 2 233444443333222 346666777777777776666555443
No 289
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=87.14 E-value=16 Score=32.59 Aligned_cols=132 Identities=14% Similarity=0.135 Sum_probs=71.8
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHH-HHHHHHHhc-CChHHHHHHHhcCCC
Q 037256 96 ELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQA-ALVDMYAKC-GQTDDGCKVFDEMSV 173 (680)
Q Consensus 96 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-~Li~~~~~~-g~~~~A~~~f~~~~~ 173 (680)
+..+.+.+.++.|+...+..++..+.+.|.+..-.+ ++..++-+|..... .|++.-.+. .-..-|.+++.++.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~- 89 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG- 89 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh-
Confidence 445555667777888888888888888777654443 34444444443333 232221110 01223344444432
Q ss_pred CChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHH
Q 037256 174 RDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAIC 239 (680)
Q Consensus 174 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 239 (680)
..+..++..+...|++-+|+++.+..... +......++.+..+.+|...-..++.....
T Consensus 90 ---~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 90 ---TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ---hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 24566777788888888888887764221 222234455555566665555555544443
No 290
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=86.91 E-value=26 Score=32.46 Aligned_cols=164 Identities=14% Similarity=0.078 Sum_probs=79.9
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHhC-CCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 037256 277 LISWNSMLTGYIQNGQASEALLLFDEMQNS-DCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMD 355 (680)
Q Consensus 277 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 355 (680)
...+......+...+.+..+...+...... ........+..........+....+...+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 355566666677777777777777666542 123333444444445555555555555555555433222 111111122
Q ss_pred -HHHHcCCHHHHHHHHhhcCCCCC----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHcc
Q 037256 356 -MYAKCGDLDTAENMFNDIHPSER----NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPD--HITFTSILSACSHA 428 (680)
Q Consensus 356 -~y~k~g~~~~A~~~f~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~ 428 (680)
.+...|+++.|...|.+.....+ ....+......+...++.++|...+.+... ..|+ ...+..+...+...
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK--LNPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh--hCcccchHHHHHhhHHHHHc
Confidence 45555666666665555422222 112222222234445555555555555555 2222 33444444455555
Q ss_pred CCHHHHHHHHHHhhh
Q 037256 429 GLIDEGRKCFADMTK 443 (680)
Q Consensus 429 g~~~~a~~~~~~m~~ 443 (680)
+.++.+...+.....
T Consensus 216 ~~~~~a~~~~~~~~~ 230 (291)
T COG0457 216 GKYEEALEYYEKALE 230 (291)
T ss_pred ccHHHHHHHHHHHHh
Confidence 555555555555544
No 291
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.31 E-value=10 Score=33.74 Aligned_cols=18 Identities=33% Similarity=0.575 Sum_probs=8.6
Q ss_pred HHcCChhHHHHHHHHHHh
Q 037256 288 IQNGQASEALLLFDEMQN 305 (680)
Q Consensus 288 ~~~g~~~~A~~~~~~m~~ 305 (680)
.+.|+...|...|.+.-.
T Consensus 105 a~kgdta~AV~aFdeia~ 122 (221)
T COG4649 105 AQKGDTAAAVAAFDEIAA 122 (221)
T ss_pred hhcccHHHHHHHHHHHhc
Confidence 344445555555554443
No 292
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=86.09 E-value=33 Score=32.87 Aligned_cols=56 Identities=14% Similarity=0.041 Sum_probs=33.7
Q ss_pred HHHHHHccCCHHHHHHHHHHhhhc--CCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256 421 ILSACSHAGLIDEGRKCFADMTKL--SVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM 476 (680)
Q Consensus 421 ll~a~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 476 (680)
+..-|.+.|.+..|..-++.|++. ...-.....-.|..+|-+.|..++|.+.-.-+
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 344566777777777777777775 22222334455666777777777765554443
No 293
>PRK09687 putative lyase; Provisional
Probab=85.87 E-value=38 Score=33.46 Aligned_cols=236 Identities=10% Similarity=0.028 Sum_probs=122.6
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCCh----hHHHHHHHHHHhCCCCCCHhhHHHH
Q 037256 243 LEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQA----SEALLLFDEMQNSDCKPNPVTALIL 318 (680)
Q Consensus 243 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~p~~~t~~~l 318 (680)
.+|..+....+..+...|..+....+..-...+|...-...+.++.+.|+. ++++..+..+... .|+...-...
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A 111 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASA 111 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHH
Confidence 344445555555555555433333333333345555555566666666653 4566666666432 4555544455
Q ss_pred HHHHhhhcchH--HHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcC-C
Q 037256 319 VSACTYLGSRQ--LGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHG-H 395 (680)
Q Consensus 319 l~a~~~~g~~~--~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g-~ 395 (680)
+.++...+... ........+...-..++..+-...+.++++.++.+ |...+-.+. ..+|...-..-+.++.+.+ .
T Consensus 112 ~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~-ai~~L~~~L-~d~~~~VR~~A~~aLg~~~~~ 189 (280)
T PRK09687 112 INATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEA-AIPLLINLL-KDPNGDVRNWAAFALNSNKYD 189 (280)
T ss_pred HHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHH-HHHHHHHHh-cCCCHHHHHHHHHHHhcCCCC
Confidence 55554443211 01112222222222346666677777777777744 444444432 2344333334444444432 2
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHh
Q 037256 396 GRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQ 475 (680)
Q Consensus 396 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 475 (680)
..++...+..+.. .+|...-...+.+..+.|+. .+...+-...+.+ + .....+.+++..|.. +|...+.+
T Consensus 190 ~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~ 259 (280)
T PRK09687 190 NPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDT 259 (280)
T ss_pred CHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHH
Confidence 4456666666663 45666666677777777774 4555555555432 2 234567778888875 56666666
Q ss_pred C-CCCCCHhHHHHHHHHH
Q 037256 476 M-PLPPNDSVWGALLLAC 492 (680)
Q Consensus 476 m-~~~p~~~~~~~ll~a~ 492 (680)
+ .-.||..+-..-+.+|
T Consensus 260 l~~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 260 LLYKFDDNEIITKAIDKL 277 (280)
T ss_pred HHhhCCChhHHHHHHHHH
Confidence 5 3345655544444433
No 294
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=85.81 E-value=1.8 Score=27.21 Aligned_cols=25 Identities=36% Similarity=0.456 Sum_probs=14.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHH
Q 037256 383 WNVLIAGYGMHGHGRKALEFFSQML 407 (680)
Q Consensus 383 ~~~li~~~~~~g~~~~A~~l~~~m~ 407 (680)
|+.|...|.+.|++++|+++|++..
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5556666666666666666666643
No 295
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.37 E-value=33 Score=32.28 Aligned_cols=53 Identities=25% Similarity=0.342 Sum_probs=27.9
Q ss_pred HhcCCHHHHHHHHHhC---CCCCCHhHHHH---HHHH--HHH------HHHHHHHHHHccCCCCCch
Q 037256 461 GRAGCLYEAFDMIKQM---PLPPNDSVWGA---LLLA--CRI------HGEIAANYLFQLEPEHTGY 513 (680)
Q Consensus 461 ~~~g~~~~A~~~~~~m---~~~p~~~~~~~---ll~a--~~~------~~~~~~~~~~~l~p~~~~~ 513 (680)
+..|++.+|+++|++. .+..+..-|.. ++.+ |.- .+..++++..+++|.-..+
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 4556667777776665 22223333321 1111 111 1567788888899974433
No 296
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=83.77 E-value=1.6 Score=26.68 Aligned_cols=28 Identities=11% Similarity=0.133 Sum_probs=24.4
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHh
Q 037256 512 GYFVLMSNIYAASNKWREVGKLREDMKN 539 (680)
Q Consensus 512 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 539 (680)
..+..++.+|...|++++|++.+++..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4678899999999999999999999875
No 297
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=83.56 E-value=2.6 Score=25.73 Aligned_cols=27 Identities=33% Similarity=0.598 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 037256 382 SWNVLIAGYGMHGHGRKALEFFSQMLE 408 (680)
Q Consensus 382 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 408 (680)
.|..+...|...|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455566666667777777777776666
No 298
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=83.47 E-value=38 Score=31.47 Aligned_cols=124 Identities=10% Similarity=0.053 Sum_probs=71.6
Q ss_pred CChHHHHHHhhhccCCCCC-cchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHH--HhccCChHHHHHH
Q 037256 56 GEPNTARSLFNSIHNDKSY-SFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKA--CASNSLILEGKVV 132 (680)
Q Consensus 56 g~~~~A~~~f~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~--~~~~~~~~~a~~~ 132 (680)
|-..-|+-=|.+.....|+ ...||-+.--+...|+++.|.+.|+...+..+. .-|..+=++ +.-.|+++.|.+-
T Consensus 79 GL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~---y~Ya~lNRgi~~YY~gR~~LAq~d 155 (297)
T COG4785 79 GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT---YNYAHLNRGIALYYGGRYKLAQDD 155 (297)
T ss_pred hHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc---chHHHhccceeeeecCchHhhHHH
Confidence 5566666666666666674 456888888888999999999999998876533 223333222 2345778887766
Q ss_pred HHHHHHhCCCCch--hHHHHHHHHHHhcCChHHHHHH-HhcCCCCChhHHHHHHHHH
Q 037256 133 HGDIIRTGFLSDS--YVQAALVDMYAKCGQTDDGCKV-FDEMSVRDLVSWTVMITAY 186 (680)
Q Consensus 133 ~~~~~~~g~~~~~--~~~~~Li~~~~~~g~~~~A~~~-f~~~~~~~~~~~~~li~~~ 186 (680)
+-..-+.+ +.|+ ..|--|+. ..-+..+|..- .++....|..-|..-|-.|
T Consensus 156 ~~~fYQ~D-~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~ 208 (297)
T COG4785 156 LLAFYQDD-PNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEKSDKEQWGWNIVEF 208 (297)
T ss_pred HHHHHhcC-CCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHhccHhhhhHHHHHH
Confidence 65554443 2233 33333322 22344455433 3344444555565544443
No 299
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=83.46 E-value=19 Score=28.77 Aligned_cols=61 Identities=16% Similarity=0.170 Sum_probs=47.1
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHH
Q 037256 253 VAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTAL 316 (680)
Q Consensus 253 i~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 316 (680)
+..+...|++++|..+.+.+.-||...|-+|-.. +.|..+++..-+.+|..+| .|...+|.
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 4456788999999999999988999999877554 6777777777777888777 66555553
No 300
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.14 E-value=32 Score=30.39 Aligned_cols=48 Identities=19% Similarity=0.313 Sum_probs=26.8
Q ss_pred HcCCHHHHHHHHhhcCCCCCCH---hHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 037256 359 KCGDLDTAENMFNDIHPSERNV---SSWNVLIAGYGMHGHGRKALEFFSQMLE 408 (680)
Q Consensus 359 k~g~~~~A~~~f~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~ 408 (680)
+.++.++++.++..+.-..|.. .++...+ +...|++.+|+.+|+++.+
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWL--HIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhc
Confidence 4556666666666553334432 2333222 4566777777777777655
No 301
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=82.80 E-value=69 Score=33.91 Aligned_cols=58 Identities=17% Similarity=0.105 Sum_probs=34.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhcCCCCCC---HhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 037256 351 NAVMDMYAKCGDLDTAENMFNDIHPSERN---VSSWNVLIAGYGMHGHGRKALEFFSQMLE 408 (680)
Q Consensus 351 ~~li~~y~k~g~~~~A~~~f~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 408 (680)
..|....-|.|+.++|.+.|+++.+..|. ......|+.++...+.+.++..++.+-.+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 34445555667777777777766433222 23445566666667777777766666543
No 302
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=82.51 E-value=1.7 Score=25.00 Aligned_cols=24 Identities=13% Similarity=0.036 Sum_probs=21.2
Q ss_pred chHHHHHHHHHhcCChhHHHHHHH
Q 037256 512 GYFVLMSNIYAASNKWREVGKLRE 535 (680)
Q Consensus 512 ~~~~~l~~~~~~~g~~~~A~~~~~ 535 (680)
.....|+.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 457789999999999999999875
No 303
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=82.12 E-value=7.7 Score=35.33 Aligned_cols=47 Identities=11% Similarity=0.073 Sum_probs=39.9
Q ss_pred HHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 037256 496 GEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKGL 542 (680)
Q Consensus 496 ~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 542 (680)
+.....++++++|....+...-+.+|.+..++++|++-++++.+...
T Consensus 153 aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 153 AIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDP 199 (271)
T ss_pred HHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCc
Confidence 44555688999998888888889999999999999999999987543
No 304
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=81.98 E-value=26 Score=31.88 Aligned_cols=57 Identities=12% Similarity=0.131 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCC------hhHHHHHHHHHHHcCChhHHHHHHHHHH
Q 037256 248 IQNSIVAMYARCGNVEKARLVFDMMEKRD------LISWNSMLTGYIQNGQASEALLLFDEMQ 304 (680)
Q Consensus 248 ~~~~Li~~y~~~g~~~~A~~~f~~m~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~ 304 (680)
.+..+.+.|.+.|+.+.|.+.|.++.+.. ...+-.+|....-.+++..+...+.+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 45566666666666666666666665431 2234455555556666666665555544
No 305
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=81.62 E-value=0.81 Score=28.47 Aligned_cols=28 Identities=18% Similarity=0.262 Sum_probs=21.0
Q ss_pred ccCCCC-CcchHHHHHHHHHhCCCchHHH
Q 037256 68 IHNDKS-YSFLWNTMIRAYANNGHCVETL 95 (680)
Q Consensus 68 ~~~~~p-~~~~~~~li~~~~~~g~~~~A~ 95 (680)
..+..| |..+|+.+...|...|++++|+
T Consensus 5 Aie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 5 AIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 333456 6778888888888888888875
No 306
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.68 E-value=55 Score=31.42 Aligned_cols=241 Identities=14% Similarity=0.239 Sum_probs=128.6
Q ss_pred CHHHHHHHHHhcCC----CC---hhHHHHHHHHHHHcCChhHHHHHHHHHHh---CCC--CCCHhhHHHHHHHHhhhcch
Q 037256 261 NVEKARLVFDMMEK----RD---LISWNSMLTGYIQNGQASEALLLFDEMQN---SDC--KPNPVTALILVSACTYLGSR 328 (680)
Q Consensus 261 ~~~~A~~~f~~m~~----~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~--~p~~~t~~~ll~a~~~~g~~ 328 (680)
+.++|..-|++..+ +. --+.-.+|..+.+.+++++.+..+++|.. +.+ .-...+.++++...+...+.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m 121 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM 121 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence 45555555555432 11 12234466677777777777777777642 111 12344566666655555554
Q ss_pred HHHHHHHHHHHH----c-CCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCC------CCC-------HhHHHHHHHHH
Q 037256 329 QLGRKFHGYIIN----S-NMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPS------ERN-------VSSWNVLIAGY 390 (680)
Q Consensus 329 ~~a~~i~~~~~~----~-~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~------~~~-------~~~~~~li~~~ 390 (680)
+.-..+++.-.+ . +-..--.+-+-|...|...|++.+..+++.++... +.| ...|..=|..|
T Consensus 122 ~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmY 201 (440)
T KOG1464|consen 122 DLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMY 201 (440)
T ss_pred HHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhh
Confidence 444444433221 0 10111122244666777777777777777776322 111 23566667778
Q ss_pred HhcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHH-----ccCCHHHHHHHH-HHhhhc---CCCcChHH---HHHHH
Q 037256 391 GMHGHGRKALEFFSQMLEEG-VKPDHITFTSILSACS-----HAGLIDEGRKCF-ADMTKL---SVKPEVKH---YACMV 457 (680)
Q Consensus 391 ~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~-----~~g~~~~a~~~~-~~m~~~---~~~p~~~~---~~~li 457 (680)
....+-.+-..++++...-. --|-+ ....+++-|. +.|.+++|-.-| +....- | .|...+ |-.|.
T Consensus 202 T~qKnNKkLK~lYeqalhiKSAIPHP-lImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsG-spRRttCLKYLVLA 279 (440)
T KOG1464|consen 202 TEQKNNKKLKALYEQALHIKSAIPHP-LIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESG-SPRRTTCLKYLVLA 279 (440)
T ss_pred hhhcccHHHHHHHHHHHHhhccCCch-HHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccC-CcchhHHHHHHHHH
Confidence 77777777777887766532 22333 3445566653 567787776443 333322 4 344333 44455
Q ss_pred HHHHhcCCHHHHHHHHHh--C-C--CCCCHhHHHHHHHHHHHHHHHHHHHHHccCC
Q 037256 458 DMLGRAGCLYEAFDMIKQ--M-P--LPPNDSVWGALLLACRIHGEIAANYLFQLEP 508 (680)
Q Consensus 458 ~~~~~~g~~~~A~~~~~~--m-~--~~p~~~~~~~ll~a~~~~~~~~~~~~~~l~p 508 (680)
.++.+.|- .-|+. . | ..|.......|+.+|.......+++++.-+.
T Consensus 280 NMLmkS~i-----NPFDsQEAKPyKNdPEIlAMTnlv~aYQ~NdI~eFE~Il~~~~ 330 (440)
T KOG1464|consen 280 NMLMKSGI-----NPFDSQEAKPYKNDPEILAMTNLVAAYQNNDIIEFERILKSNR 330 (440)
T ss_pred HHHHHcCC-----CCCcccccCCCCCCHHHHHHHHHHHHHhcccHHHHHHHHHhhh
Confidence 55555541 11111 1 2 3455667778888888887777777766443
No 307
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=80.54 E-value=2.6 Score=25.89 Aligned_cols=29 Identities=10% Similarity=0.104 Sum_probs=24.9
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 037256 512 GYFVLMSNIYAASNKWREVGKLREDMKNK 540 (680)
Q Consensus 512 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 540 (680)
..|..++.+|...|++++|...+++..+.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 46889999999999999999999998763
No 308
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=80.01 E-value=3.1 Score=26.78 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=24.1
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHh
Q 037256 512 GYFVLMSNIYAASNKWREVGKLREDMKN 539 (680)
Q Consensus 512 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 539 (680)
.++..|+.+|...|++++|.+++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4678899999999999999999999865
No 309
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.75 E-value=26 Score=37.59 Aligned_cols=99 Identities=18% Similarity=0.121 Sum_probs=52.8
Q ss_pred HcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 037256 359 KCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCF 438 (680)
Q Consensus 359 k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 438 (680)
+.|+++.|.++..+. .+..-|..|..+..+.|++..|.+.|.+... |.+|+-.+...|+-+....+-
T Consensus 649 ~lgrl~iA~~la~e~----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la 715 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA----NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLA 715 (794)
T ss_pred hcCcHHHHHHHHHhh----cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHH
Confidence 445666665555433 2345566666666666666666666655443 445555555555554444443
Q ss_pred HHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256 439 ADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM 476 (680)
Q Consensus 439 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 476 (680)
....+.| ..|. -.-+|...|+++++.+++.+-
T Consensus 716 ~~~~~~g-~~N~-----AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 716 SLAKKQG-KNNL-----AFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHhhc-ccch-----HHHHHHHcCCHHHHHHHHHhc
Confidence 3334334 2222 223445566666666666655
No 310
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.51 E-value=1.1e+02 Score=34.21 Aligned_cols=48 Identities=15% Similarity=0.033 Sum_probs=31.0
Q ss_pred CChHHHHHHhhhccCCCCC---cchHHHHHHHHHhCCCchHHHHHHHHHHh
Q 037256 56 GEPNTARSLFNSIHNDKSY---SFLWNTMIRAYANNGHCVETLELYSTMRR 103 (680)
Q Consensus 56 g~~~~A~~~f~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 103 (680)
+.+++|..+-+..+...|. ...|-..|..+.-.|++++|-...-.|..
T Consensus 370 k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g 420 (846)
T KOG2066|consen 370 KKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG 420 (846)
T ss_pred hHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc
Confidence 6677777777665554332 22466777777777777777776666653
No 311
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=78.78 E-value=32 Score=27.55 Aligned_cols=86 Identities=15% Similarity=0.231 Sum_probs=51.7
Q ss_pred hHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 037256 328 RQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQML 407 (680)
Q Consensus 328 ~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 407 (680)
.++|..|-+.+...+-. ...+--.-+..+...|++++|..+.+.. ..||...|-+|-.. +.|..+++..-+.+|.
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~--~~pdlepw~ALce~--rlGl~s~l~~rl~rla 95 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL--CYPDLEPWLALCEW--RLGLGSALESRLNRLA 95 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC--CCchHHHHHHHHHH--hhccHHHHHHHHHHHH
Confidence 34455554444443311 2222222344566778888888888877 68888888776553 5666666666677777
Q ss_pred HcCCCCCHHHHH
Q 037256 408 EEGVKPDHITFT 419 (680)
Q Consensus 408 ~~g~~p~~~t~~ 419 (680)
.+| .|...+|.
T Consensus 96 ~sg-~p~lq~Fa 106 (115)
T TIGR02508 96 ASG-DPRLQTFV 106 (115)
T ss_pred hCC-CHHHHHHH
Confidence 665 55555554
No 312
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=78.72 E-value=2.7 Score=25.43 Aligned_cols=28 Identities=7% Similarity=0.123 Sum_probs=24.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 037256 513 YFVLMSNIYAASNKWREVGKLREDMKNK 540 (680)
Q Consensus 513 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 540 (680)
++..++.+|.+.|++++|.+.++.+.++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4677899999999999999999998764
No 313
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=78.52 E-value=13 Score=25.84 Aligned_cols=27 Identities=0% Similarity=0.015 Sum_probs=22.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 037256 513 YFVLMSNIYAASNKWREVGKLREDMKN 539 (680)
Q Consensus 513 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 539 (680)
.+..++-++.+.|++++|.+..+.+.+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 456778889999999999999999986
No 314
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=78.42 E-value=12 Score=32.50 Aligned_cols=39 Identities=10% Similarity=0.140 Sum_probs=34.3
Q ss_pred HccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 037256 504 FQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKGL 542 (680)
Q Consensus 504 ~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 542 (680)
.-+.|+.++.-..-++++...|+|++|.++++...+.+.
T Consensus 37 rvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 37 RVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred HHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 346788888889999999999999999999999988764
No 315
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=78.41 E-value=2.4 Score=36.97 Aligned_cols=71 Identities=17% Similarity=0.307 Sum_probs=32.8
Q ss_pred CChHHHHHHhhhccCCCC--CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHH
Q 037256 56 GEPNTARSLFNSIHNDKS--YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVH 133 (680)
Q Consensus 56 g~~~~A~~~f~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 133 (680)
+.+....+.++.+....+ +....+.++..|++.+..++..++++ ..+.+-...+++.|.+.+.++++..++
T Consensus 21 ~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~-------~~~~yd~~~~~~~c~~~~l~~~a~~Ly 93 (143)
T PF00637_consen 21 NQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK-------TSNNYDLDKALRLCEKHGLYEEAVYLY 93 (143)
T ss_dssp T-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT-------SSSSS-CTHHHHHHHTTTSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc-------cccccCHHHHHHHHHhcchHHHHHHHH
Confidence 555555555555443211 34445566666666655555555544 112233344555555555444444433
No 316
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=78.40 E-value=4.5 Score=24.71 Aligned_cols=28 Identities=14% Similarity=0.197 Sum_probs=25.1
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHh
Q 037256 512 GYFVLMSNIYAASNKWREVGKLREDMKN 539 (680)
Q Consensus 512 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 539 (680)
.+|..++.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3688999999999999999999998765
No 317
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=78.34 E-value=74 Score=31.53 Aligned_cols=19 Identities=16% Similarity=0.268 Sum_probs=13.5
Q ss_pred HHHHHHHHHccCCCCCchH
Q 037256 496 GEIAANYLFQLEPEHTGYF 514 (680)
Q Consensus 496 ~~~~~~~~~~l~p~~~~~~ 514 (680)
+.+++.++.+.+|.-|.+.
T Consensus 381 AvEAihRAvEFNPHVPkYL 399 (556)
T KOG3807|consen 381 AVEAIHRAVEFNPHVPKYL 399 (556)
T ss_pred HHHHHHHHhhcCCCCcHHH
Confidence 6777788888888765443
No 318
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=77.50 E-value=1.2 Score=38.85 Aligned_cols=84 Identities=14% Similarity=0.137 Sum_probs=52.2
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHhCCCccHH
Q 037256 116 VLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEKPEEA 195 (680)
Q Consensus 116 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 195 (680)
++..+.+.+.+.....+++.+.+.+...+....+.|+..|++.++.+...+.++.... .-...++..+.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4555556666666667777777666556677778888888888777777777764332 3334555556666666666
Q ss_pred HHHHHHH
Q 037256 196 LILFQKT 202 (680)
Q Consensus 196 ~~~~~~m 202 (680)
.-++.++
T Consensus 90 ~~Ly~~~ 96 (143)
T PF00637_consen 90 VYLYSKL 96 (143)
T ss_dssp HHHHHCC
T ss_pred HHHHHHc
Confidence 6665554
No 319
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=77.42 E-value=17 Score=28.83 Aligned_cols=62 Identities=10% Similarity=0.207 Sum_probs=46.7
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhc-CCCcChHHHHHHHH
Q 037256 395 HGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKL-SVKPEVKHYACMVD 458 (680)
Q Consensus 395 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~ 458 (680)
+.-++.+-++.+....+-|+.....+.|.||-+.+++..|.++|+..+.+ |. +...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 34466666777777778899999999999999999999999999987755 42 4446666553
No 320
>PRK11619 lytic murein transglycosylase; Provisional
Probab=76.88 E-value=1.3e+02 Score=33.72 Aligned_cols=59 Identities=15% Similarity=0.164 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHH-HHHHHHHHhcCChHHHHHHHHHH
Q 037256 348 TLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSW-NVLIAGYGMHGHGRKALEFFSQM 406 (680)
Q Consensus 348 ~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~l~~~m 406 (680)
.+...-+..-.+.++++.+...|..|.+...+..-| -=+..++...|+.++|...|++.
T Consensus 313 ~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 313 SLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333444444446666666666666662222221111 11333444466667776666665
No 321
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=76.34 E-value=14 Score=29.59 Aligned_cols=59 Identities=10% Similarity=0.188 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhc-CCCcChHHHHHHHH
Q 037256 398 KALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKL-SVKPEVKHYACMVD 458 (680)
Q Consensus 398 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~ 458 (680)
+..+-++.+....+-|+.....+.|.||.+.+++..|.++|+..+.+ |-. ...|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 55555666666677888888888889999999999999988888776 422 226666653
No 322
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=75.84 E-value=4.6 Score=24.63 Aligned_cols=27 Identities=33% Similarity=0.440 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 037256 382 SWNVLIAGYGMHGHGRKALEFFSQMLE 408 (680)
Q Consensus 382 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 408 (680)
+|..+...|.+.|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455555666666666666666666655
No 323
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=75.51 E-value=23 Score=32.64 Aligned_cols=73 Identities=8% Similarity=-0.008 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhc---CCCcChHHHHHHHHHHHhcCCHHHHH
Q 037256 397 RKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKL---SVKPEVKHYACMVDMLGRAGCLYEAF 470 (680)
Q Consensus 397 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~A~ 470 (680)
++|.+.|-++...+.--+......|.. |-...+.+++.+++....+. +-.+|+..+.+|+..|-+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 466777766666554434334444443 33356777777777776665 33677777778888887777777764
No 324
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=75.46 E-value=6.7 Score=25.13 Aligned_cols=28 Identities=36% Similarity=0.507 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 037256 381 SSWNVLIAGYGMHGHGRKALEFFSQMLE 408 (680)
Q Consensus 381 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 408 (680)
.+++.|...|...|++++|+.++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3455666666666666666666665543
No 325
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.31 E-value=36 Score=36.58 Aligned_cols=150 Identities=16% Similarity=0.105 Sum_probs=95.2
Q ss_pred hcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHH
Q 037256 258 RCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGY 337 (680)
Q Consensus 258 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~ 337 (680)
-.|+++.|..++..++++ .-+.++.-+-++|..++|+++ .+|+..- .....+.|+++.|.++..+
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFDLAVE 662 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHHHHHh
Confidence 456777777766666632 234455555666777776654 3333221 2223466777777776554
Q ss_pred HHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 037256 338 IINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHIT 417 (680)
Q Consensus 338 ~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 417 (680)
. .+..-|..|.++..+.|++..|.+.|.+.. -|..|+-.+...|+.+.-..+-....++|. -|
T Consensus 663 ~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~-------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~-~N--- 725 (794)
T KOG0276|consen 663 A------NSEVKWRQLGDAALSAGELPLASECFLRAR-------DLGSLLLLYTSSGNAEGLAVLASLAKKQGK-NN--- 725 (794)
T ss_pred h------cchHHHHHHHHHHhhcccchhHHHHHHhhc-------chhhhhhhhhhcCChhHHHHHHHHHHhhcc-cc---
Confidence 3 356778888888888889988888888762 366677777777877666666666666552 22
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHh
Q 037256 418 FTSILSACSHAGLIDEGRKCFADM 441 (680)
Q Consensus 418 ~~~ll~a~~~~g~~~~a~~~~~~m 441 (680)
....++...|+++++.+++.+-
T Consensus 726 --~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 726 --LAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred --hHHHHHHHcCCHHHHHHHHHhc
Confidence 2223556678888888877543
No 326
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.89 E-value=32 Score=33.87 Aligned_cols=100 Identities=6% Similarity=0.022 Sum_probs=58.4
Q ss_pred cCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC-CCh-----hHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhh
Q 037256 241 AFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEK-RDL-----ISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVT 314 (680)
Q Consensus 241 g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~-~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 314 (680)
|.+....+...++..-....+++++...+-++.. ++. .+-.++++.+ -.-++++++.++..=.+-|+-||.+|
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH-HccChHHHHHHHhCcchhccccchhh
Confidence 4444444555555555555666776666655543 111 1111122222 22356677777777777777777777
Q ss_pred HHHHHHHHhhhcchHHHHHHHHHHHHc
Q 037256 315 ALILVSACTYLGSRQLGRKFHGYIINS 341 (680)
Q Consensus 315 ~~~ll~a~~~~g~~~~a~~i~~~~~~~ 341 (680)
++.++..+.+.++...|.++.-.++..
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 777777777777777777766665543
No 327
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=73.58 E-value=23 Score=32.63 Aligned_cols=73 Identities=10% Similarity=0.085 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHc---CCCCchHHHHHHHHHHHHcCCHHHHH
Q 037256 294 SEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINS---NMKIDATLRNAVMDMYAKCGDLDTAE 367 (680)
Q Consensus 294 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~---~~~~~~~~~~~li~~y~k~g~~~~A~ 367 (680)
++|.+.|-++...+.- +....-..+..+....+.+++.+++-..... +-.+|+.++.+|++.|.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l-~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPEL-ETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 4455555555444422 2222222233333344445555544444331 22456666666666666666666653
No 328
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=73.58 E-value=1.6e+02 Score=33.00 Aligned_cols=88 Identities=19% Similarity=0.215 Sum_probs=39.5
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhc-CCCcChHHHHHHHHHHHh---cC
Q 037256 389 GYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKL-SVKPEVKHYACMVDMLGR---AG 464 (680)
Q Consensus 389 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~---~g 464 (680)
.+.-.|+++.|++.+-+ ..+...|.+.+...+.-| |.+......-..+... .-.|....+..||..|.+ ..
T Consensus 267 ~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~---gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~~t 341 (613)
T PF04097_consen 267 VLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYY---GLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFEIT 341 (613)
T ss_dssp HHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHT---T------------------------HHHHHHHHHHTTTTT
T ss_pred HHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHc---CCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHhcc
Confidence 34457889999988876 223455556555555433 2222222111333322 111222567788888875 56
Q ss_pred CHHHHHHHHHhCCCCCC
Q 037256 465 CLYEAFDMIKQMPLPPN 481 (680)
Q Consensus 465 ~~~~A~~~~~~m~~~p~ 481 (680)
+..+|.+++--+...++
T Consensus 342 d~~~Al~Y~~li~~~~~ 358 (613)
T PF04097_consen 342 DPREALQYLYLICLFKD 358 (613)
T ss_dssp -HHHHHHHHHGGGGS-S
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 78888888877644333
No 329
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=72.87 E-value=2.9e+02 Score=35.61 Aligned_cols=57 Identities=12% Similarity=0.201 Sum_probs=36.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256 417 TFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM 476 (680)
Q Consensus 417 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 476 (680)
+|....+.+...|.++.|...+-...+.+ .|. .+--....+...|+-..|+.++++.
T Consensus 1672 ~wLqsAriaR~aG~~q~A~nall~A~e~r-~~~--i~~E~AK~lW~~gd~~~Al~~Lq~~ 1728 (2382)
T KOG0890|consen 1672 CWLQSARIARLAGHLQRAQNALLNAKESR-LPE--IVLERAKLLWQTGDELNALSVLQEI 1728 (2382)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhhhhcc-cch--HHHHHHHHHHhhccHHHHHHHHHHH
Confidence 56666777777777777777665555543 333 3334456667777777777777654
No 330
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=72.03 E-value=52 Score=26.76 Aligned_cols=87 Identities=14% Similarity=0.098 Sum_probs=52.2
Q ss_pred CChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHH
Q 037256 225 GDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQ 304 (680)
Q Consensus 225 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 304 (680)
...++|..|.+.+...+- ....+--.-+..+.+.|++++|...=.....||..+|-+|-. .+.|..+++...+.++.
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLA 96 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 345566666666655543 223333334456778899999955555555688888877654 47888888888888887
Q ss_pred hCCCCCCHhhH
Q 037256 305 NSDCKPNPVTA 315 (680)
Q Consensus 305 ~~g~~p~~~t~ 315 (680)
.+| .|....|
T Consensus 97 ~~g-~~~~q~F 106 (116)
T PF09477_consen 97 SSG-SPELQAF 106 (116)
T ss_dssp T-S-SHHHHHH
T ss_pred hCC-CHHHHHH
Confidence 766 5544444
No 331
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=70.59 E-value=26 Score=27.90 Aligned_cols=59 Identities=10% Similarity=0.098 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHH-HhCCCCchhHHHHHHH
Q 037256 93 ETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDII-RTGFLSDSYVQAALVD 153 (680)
Q Consensus 93 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~-~~g~~~~~~~~~~Li~ 153 (680)
++.+-++.+....+.|++....+.|+||.+.+++..|.++++-+. +.| .+...|..++.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 455556666666778888888888888888888888888888665 333 23445655543
No 332
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=70.45 E-value=1.1e+02 Score=29.94 Aligned_cols=53 Identities=13% Similarity=0.213 Sum_probs=27.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHh
Q 037256 387 IAGYGMHGHGRKALEFFSQMLEEGVKP-DHITFTSILSACSHAGLIDEGRKCFADM 441 (680)
Q Consensus 387 i~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m 441 (680)
...|..+|.+.+|.++-++.+. +.| +...+-.++..+...|+--.+..-++++
T Consensus 286 a~~yle~g~~neAi~l~qr~lt--ldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 286 ARAYLEAGKPNEAIQLHQRALT--LDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHcCChHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3445556666666665555555 233 3334445555555566544444444443
No 333
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=70.38 E-value=1.8e+02 Score=32.25 Aligned_cols=26 Identities=12% Similarity=0.252 Sum_probs=18.7
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHH
Q 037256 75 SFLWNTMIRAYANNGHCVETLELYSTM 101 (680)
Q Consensus 75 ~~~~~~li~~~~~~g~~~~A~~~~~~m 101 (680)
..-|+ .+..+.-.|.++.|..++...
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~~ 174 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRLH 174 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-TT
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHhc
Confidence 45576 677888889999999998543
No 334
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=70.23 E-value=10 Score=29.93 Aligned_cols=45 Identities=9% Similarity=0.088 Sum_probs=37.6
Q ss_pred HHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 037256 497 EIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKG 541 (680)
Q Consensus 497 ~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 541 (680)
..+++..++-+|+|...-..++..+...|++++|.+.+-.+.++.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 456677888999999999999999999999999999999998754
No 335
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=70.12 E-value=1.3e+02 Score=30.58 Aligned_cols=174 Identities=11% Similarity=0.049 Sum_probs=92.1
Q ss_pred CChHHHHHHhhhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHhCC---CC-CCcccHHHHHHHHhccCChHHHHH
Q 037256 56 GEPNTARSLFNSIHNDKSYSFLWNTMIRAYANNGHCVETLELYSTMRRSG---IS-SNSYTFPFVLKACASNSLILEGKV 131 (680)
Q Consensus 56 g~~~~A~~~f~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~-p~~~t~~~ll~~~~~~~~~~~a~~ 131 (680)
|+++.-.+.....+...|+...+.++... +.|+++++....+++...- .. .....|............+.+..+
T Consensus 12 ~~Wd~l~~~~~~~~~~~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~lq~L~Elee 89 (352)
T PF02259_consen 12 GDWDLLEEYLSQSNEDSPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKLQQLVELEE 89 (352)
T ss_pred CChhhHHHHHhhccCCChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHH
Confidence 77777666666666554444455555443 6777777777776664321 00 011222222222222222222222
Q ss_pred HHHHHHHh-------------------CCCCchhHHHHHHHHHHhcCChHHHHHHHh--cCCCCChhHHHHHHHHHHhCC
Q 037256 132 VHGDIIRT-------------------GFLSDSYVQAALVDMYAKCGQTDDGCKVFD--EMSVRDLVSWTVMITAYEQAE 190 (680)
Q Consensus 132 ~~~~~~~~-------------------g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~--~~~~~~~~~~~~li~~~~~~g 190 (680)
+.+..... ...++..++..++..-. .+|+ .++.....+|..++..+.+.|
T Consensus 90 ~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~---------~~l~~~~~~~~~~~~~l~~a~~aRk~g 160 (352)
T PF02259_consen 90 IIELKSNLSQNPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRR---------LVLSLILLPEELAETWLKFAKLARKAG 160 (352)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH---------HHHhcccchhHHHHHHHHHHHHHHHCC
Confidence 22111100 12344444444443211 1122 222335567888999999999
Q ss_pred CccHHHHHHHHHHHcCCCC---CHhHHHHHHHHHhccCChHHHHHHHHHHHHc
Q 037256 191 KPEEALILFQKTQQEGLLS---DSVTIVSVASAVGQLGDVLKAQAVHGYAICN 240 (680)
Q Consensus 191 ~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 240 (680)
.++.|...+.++...+... +......-.+..-..|+..+|...+...++.
T Consensus 161 ~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 161 NFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred CcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999998887654222 2333444455666778888888888777763
No 336
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=70.11 E-value=1.3e+02 Score=30.58 Aligned_cols=65 Identities=12% Similarity=0.085 Sum_probs=35.3
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHhhh
Q 037256 379 NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKP---DHITFTSILSACSHAGLIDEGRKCFADMTK 443 (680)
Q Consensus 379 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 443 (680)
...+|..++..+.+.|+++.|...+.++...+..+ +......-+...-..|+.++|...++...+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34556666666667777777776666666532111 112222233344455666666666666555
No 337
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=69.96 E-value=75 Score=27.73 Aligned_cols=16 Identities=19% Similarity=0.480 Sum_probs=7.5
Q ss_pred HHcCCHHHHHHHHhhc
Q 037256 358 AKCGDLDTAENMFNDI 373 (680)
Q Consensus 358 ~k~g~~~~A~~~f~~~ 373 (680)
...|++++|.++|+++
T Consensus 55 i~rg~w~eA~rvlr~l 70 (153)
T TIGR02561 55 IARGNYDEAARILREL 70 (153)
T ss_pred HHcCCHHHHHHHHHhh
Confidence 3444444444444444
No 338
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.08 E-value=87 Score=28.13 Aligned_cols=88 Identities=17% Similarity=0.109 Sum_probs=44.1
Q ss_pred HHHcCCHHHHHHHHhhcCCCCCCHhHHHH---HHH--HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 037256 357 YAKCGDLDTAENMFNDIHPSERNVSSWNV---LIA--GYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLI 431 (680)
Q Consensus 357 y~k~g~~~~A~~~f~~~~~~~~~~~~~~~---li~--~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 431 (680)
....|+...|...|+++-...+-+....- |=. .+..+|.++......+.+-..|-+--...--.|--+-.+.|++
T Consensus 104 ~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~ 183 (221)
T COG4649 104 LAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDF 183 (221)
T ss_pred HhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccch
Confidence 44556666666666666333222222111 111 2345666666655555544333221222233344455567777
Q ss_pred HHHHHHHHHhhhc
Q 037256 432 DEGRKCFADMTKL 444 (680)
Q Consensus 432 ~~a~~~~~~m~~~ 444 (680)
..|...|..+...
T Consensus 184 a~A~~~F~qia~D 196 (221)
T COG4649 184 AKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHHHHHcc
Confidence 7777777776665
No 339
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=67.88 E-value=61 Score=28.22 Aligned_cols=79 Identities=13% Similarity=0.183 Sum_probs=53.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-------CHHHHHHHHHHHHccCC-HHHHHHHHHHhhhcCCCcChHHHH
Q 037256 383 WNVLIAGYGMHGHGRKALEFFSQMLEEGVKP-------DHITFTSILSACSHAGL-IDEGRKCFADMTKLSVKPEVKHYA 454 (680)
Q Consensus 383 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-------~~~t~~~ll~a~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~ 454 (680)
.|.++.-.+..+++.-.+.+++.+.. +.| +..+|.+++.+.++... ---+..+|+-|.+.+++++...|.
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~--l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~ 119 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHF--LNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYS 119 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHH--hhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 46666665666666666666665533 222 34467888888876665 445677888888777788888888
Q ss_pred HHHHHHHhc
Q 037256 455 CMVDMLGRA 463 (680)
Q Consensus 455 ~li~~~~~~ 463 (680)
+|+.+..+-
T Consensus 120 ~li~~~l~g 128 (145)
T PF13762_consen 120 CLIKAALRG 128 (145)
T ss_pred HHHHHHHcC
Confidence 888776553
No 340
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=65.63 E-value=17 Score=35.97 Aligned_cols=44 Identities=14% Similarity=0.127 Sum_probs=21.5
Q ss_pred HHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHHcCChhHHHH
Q 037256 255 MYARCGNVEKARLVFDMMEK--R-DLISWNSMLTGYIQNGQASEALL 298 (680)
Q Consensus 255 ~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~ 298 (680)
-|.+.|++++|...|..-.. | |++.+..-..+|.+...+..|..
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~ 152 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEE 152 (536)
T ss_pred hhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHH
Confidence 35555555555555554332 2 44455444555555554444443
No 341
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=65.51 E-value=30 Score=27.84 Aligned_cols=60 Identities=8% Similarity=0.010 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 037256 93 ETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVD 153 (680)
Q Consensus 93 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 153 (680)
+..+-++.+....+.|++....+.|++|.+.+++..|.++++-+...- .+....|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 445555556666777888888888888888888888888887665432 233336665554
No 342
>PHA02875 ankyrin repeat protein; Provisional
Probab=65.44 E-value=1.8e+02 Score=30.50 Aligned_cols=21 Identities=10% Similarity=0.265 Sum_probs=11.1
Q ss_pred HHHHHhcCCHHHHHHHHHhcC
Q 037256 253 VAMYARCGNVEKARLVFDMME 273 (680)
Q Consensus 253 i~~y~~~g~~~~A~~~f~~m~ 273 (680)
+...+..|+.+-+..+++.-.
T Consensus 172 L~~A~~~g~~eiv~~Ll~~ga 192 (413)
T PHA02875 172 LIIAMAKGDIAICKMLLDSGA 192 (413)
T ss_pred HHHHHHcCCHHHHHHHHhCCC
Confidence 334445566666555555433
No 343
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=65.30 E-value=91 Score=28.25 Aligned_cols=29 Identities=17% Similarity=0.330 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHcCCCCCHH-HHHHHHHHHHcc
Q 037256 398 KALEFFSQMLEEGVKPDHI-TFTSILSACSHA 428 (680)
Q Consensus 398 ~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~ 428 (680)
+|+.-|++.+. +.|+.. ++..+-.++...
T Consensus 53 dAisK~eeAL~--I~P~~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 53 DAISKFEEALK--INPNKHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHH--H-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--cCCchHHHHHHHHHHHHHH
Confidence 33444444444 556653 555555555443
No 344
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=64.25 E-value=1.5e+02 Score=28.98 Aligned_cols=49 Identities=14% Similarity=0.160 Sum_probs=28.6
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCC
Q 037256 244 EDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQ 292 (680)
Q Consensus 244 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~ 292 (680)
-|+.....+...|.+.|++.+|+..|-.-..++...+..++.-....|.
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~ 136 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGY 136 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcC
Confidence 3667778888888899999888887765544444444334433333333
No 345
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=63.66 E-value=80 Score=25.74 Aligned_cols=79 Identities=11% Similarity=0.176 Sum_probs=39.8
Q ss_pred chHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 037256 327 SRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQM 406 (680)
Q Consensus 327 ~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 406 (680)
..++|..|.+.+...+- ....+.-.-+..+.+.|++++| +..-.....||...|-+|-.. +.|..+++..-+.++
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A--Ll~~~~~~~pdL~p~~AL~a~--klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA--LLLPQCHCYPDLEPWAALCAW--KLGLASALESRLTRL 95 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH--HHHHTTS--GGGHHHHHHHHH--HCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH--HHhcccCCCccHHHHHHHHHH--hhccHHHHHHHHHHH
Confidence 34555566655555442 2233333334455667777777 333332356777777665443 566666666666666
Q ss_pred HHcC
Q 037256 407 LEEG 410 (680)
Q Consensus 407 ~~~g 410 (680)
-.+|
T Consensus 96 a~~g 99 (116)
T PF09477_consen 96 ASSG 99 (116)
T ss_dssp CT-S
T ss_pred HhCC
Confidence 5544
No 346
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=62.52 E-value=52 Score=30.23 Aligned_cols=84 Identities=14% Similarity=0.123 Sum_probs=49.0
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcC-hHHHHHHHHHHHhc
Q 037256 390 YGMHGHGRKALEFFSQMLEEGVKPDH-----ITFTSILSACSHAGLIDEGRKCFADMTKLSVKPE-VKHYACMVDMLGRA 463 (680)
Q Consensus 390 ~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~ 463 (680)
+..+|++++|..-|.+.++. ++|.. +.|..-..+..+.+.++.|+.-..+.++.+ |+ ......-..+|.+.
T Consensus 105 ~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--PTYEKALERRAEAYEKM 181 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--chhHHHHHHHHHHHHhh
Confidence 45678888888888887773 22222 233333445677778888777776666543 22 11222223456666
Q ss_pred CCHHHHHHHHHhC
Q 037256 464 GCLYEAFDMIKQM 476 (680)
Q Consensus 464 g~~~~A~~~~~~m 476 (680)
..+++|++=+.++
T Consensus 182 ek~eealeDyKki 194 (271)
T KOG4234|consen 182 EKYEEALEDYKKI 194 (271)
T ss_pred hhHHHHHHHHHHH
Confidence 6677766666554
No 347
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=60.69 E-value=2.1e+02 Score=29.57 Aligned_cols=62 Identities=19% Similarity=0.200 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHhhcCCCC----CCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 037256 347 ATLRNAVMDMYAKCGDLDTAENMFNDIHPSE----RNVSSWNVLIAGYGMHGHGRKALEFFSQMLE 408 (680)
Q Consensus 347 ~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 408 (680)
.....-+.+-|..||+++.|.+.|.+..+-- .-+..|-.+|..-.-.|++........+..+
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 3456678888999999999999998863321 1223454555555556677766666666554
No 348
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.19 E-value=1.4e+02 Score=27.44 Aligned_cols=125 Identities=9% Similarity=0.078 Sum_probs=71.1
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHH-----HHHHhccCChHHHHHHHHHHHHhCCCCc--hhHHH
Q 037256 77 LWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFV-----LKACASNSLILEGKVVHGDIIRTGFLSD--SYVQA 149 (680)
Q Consensus 77 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-----l~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~ 149 (680)
.|..++.... .+.+ +.....+++.... ...+|..+ .+.....+++++|..-+...+..--+.+ ..+--
T Consensus 56 ~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n---~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~l 130 (207)
T COG2976 56 QYQNAIKAVQ-AKKP-KSIAAAEKFVQAN---GKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAAL 130 (207)
T ss_pred HHHHHHHHHh-cCCc-hhHHHHHHHHhhc---cccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHH
Confidence 3555555443 3333 4445555555432 12233322 3345667888888887777664311111 11222
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCChhH--HHHHHHHHHhCCCccHHHHHHHHHHHcC
Q 037256 150 ALVDMYAKCGQTDDGCKVFDEMSVRDLVS--WTVMITAYEQAEKPEEALILFQKTQQEG 206 (680)
Q Consensus 150 ~Li~~~~~~g~~~~A~~~f~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g 206 (680)
.|.......|.+|+|++.++....++-.+ -..-.+.+...|+-++|..-|.+.++.+
T Consensus 131 RLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 131 RLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 34455667788888888888877665443 2233456777888888888888777664
No 349
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=60.11 E-value=99 Score=30.13 Aligned_cols=88 Identities=11% Similarity=0.110 Sum_probs=53.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHh--
Q 037256 387 IAGYGMHGHGRKALEFFSQMLEE--GVKPDHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGR-- 462 (680)
Q Consensus 387 i~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-- 462 (680)
|.+++..+++.+++...-+--+. .++|...-..++ .|++.+.+..+.++-..-.+..-.-+..-|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCIL--LysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCIL--LYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHH--HHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 56677777777776544333321 244444333333 477888888877777776665223334447777766654
Q ss_pred ---cCCHHHHHHHHHhC
Q 037256 463 ---AGCLYEAFDMIKQM 476 (680)
Q Consensus 463 ---~g~~~~A~~~~~~m 476 (680)
.|.++||++++..-
T Consensus 168 LlPLG~~~eAeelv~gs 184 (309)
T PF07163_consen 168 LLPLGHFSEAEELVVGS 184 (309)
T ss_pred HhccccHHHHHHHHhcC
Confidence 68888888888543
No 350
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=58.77 E-value=16 Score=24.32 Aligned_cols=27 Identities=15% Similarity=0.288 Sum_probs=23.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCC
Q 037256 515 VLMSNIYAASNKWREVGKLREDMKNKG 541 (680)
Q Consensus 515 ~~l~~~~~~~g~~~~A~~~~~~m~~~g 541 (680)
..|+.+|...|+.+.|.++++.....|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 458899999999999999999998643
No 351
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.82 E-value=1.7e+02 Score=27.74 Aligned_cols=26 Identities=4% Similarity=0.166 Sum_probs=15.0
Q ss_pred HHccCCHHHHHHHHHHhhhcCCCcCh
Q 037256 425 CSHAGLIDEGRKCFADMTKLSVKPEV 450 (680)
Q Consensus 425 ~~~~g~~~~a~~~~~~m~~~~~~p~~ 450 (680)
-+..+++.+|+.+|++..+.....+.
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n~L 189 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDNNL 189 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchH
Confidence 34556666777777766655433333
No 352
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=57.69 E-value=2e+02 Score=28.34 Aligned_cols=59 Identities=14% Similarity=0.090 Sum_probs=46.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256 417 TFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM 476 (680)
Q Consensus 417 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 476 (680)
++......|..+|.+.+|.++.++..+.+ +.+...|-.++..|...|+--+|.+-++++
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 45556678999999999999999988765 667778888999999999866665555544
No 353
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=56.08 E-value=19 Score=20.43 Aligned_cols=26 Identities=31% Similarity=0.363 Sum_probs=13.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 037256 383 WNVLIAGYGMHGHGRKALEFFSQMLE 408 (680)
Q Consensus 383 ~~~li~~~~~~g~~~~A~~l~~~m~~ 408 (680)
|..+...+...|++++|...|++..+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 44444455555555555555555443
No 354
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=55.79 E-value=28 Score=26.49 Aligned_cols=46 Identities=7% Similarity=0.094 Sum_probs=21.0
Q ss_pred ccCCHHHHHHHHHHhhhcCC-CcC-hHHHHHHHHHHHhcCCHHHHHHH
Q 037256 427 HAGLIDEGRKCFADMTKLSV-KPE-VKHYACMVDMLGRAGCLYEAFDM 472 (680)
Q Consensus 427 ~~g~~~~a~~~~~~m~~~~~-~p~-~~~~~~li~~~~~~g~~~~A~~~ 472 (680)
+....++|+..|....+.-. .|+ ..+..+|+.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555444311 111 23344555555555555555443
No 355
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=55.53 E-value=2.3e+02 Score=28.67 Aligned_cols=89 Identities=7% Similarity=-0.053 Sum_probs=49.7
Q ss_pred hhccCCCC-CcchHHHHHHHHHhC---C---------CchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHH
Q 037256 66 NSIHNDKS-YSFLWNTMIRAYANN---G---------HCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVV 132 (680)
Q Consensus 66 ~~~~~~~p-~~~~~~~li~~~~~~---g---------~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 132 (680)
++.....| |+.+|-.++.---.. + ..+.-+.++++.++..+ -+.......|..+.+.-+.+...+.
T Consensus 9 ~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~ 87 (321)
T PF08424_consen 9 NRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKK 87 (321)
T ss_pred HHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 33334456 677887776532211 1 12345566777666532 2444455566666666666776777
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHH
Q 037256 133 HGDIIRTGFLSDSYVQAALVDMYA 156 (680)
Q Consensus 133 ~~~~~~~g~~~~~~~~~~Li~~~~ 156 (680)
++.++... +.+...|...|+...
T Consensus 88 we~~l~~~-~~~~~LW~~yL~~~q 110 (321)
T PF08424_consen 88 WEELLFKN-PGSPELWREYLDFRQ 110 (321)
T ss_pred HHHHHHHC-CCChHHHHHHHHHHH
Confidence 77777653 335666666665443
No 356
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=55.29 E-value=38 Score=31.23 Aligned_cols=32 Identities=19% Similarity=0.146 Sum_probs=18.2
Q ss_pred CCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256 445 SVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM 476 (680)
Q Consensus 445 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 476 (680)
...|+..+|..++..+...|+.++|.++.+++
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34555555555555555666666665555554
No 357
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=55.16 E-value=1.2e+02 Score=26.41 Aligned_cols=50 Identities=12% Similarity=0.133 Sum_probs=37.4
Q ss_pred ChhHHHHHHHHHHhCCC-ccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcc
Q 037256 175 DLVSWTVMITAYEQAEK-PEEALILFQKTQQEGLLSDSVTIVSVASAVGQL 224 (680)
Q Consensus 175 ~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 224 (680)
+-.+|++++.+..+..- ---+..+|.-|.+.+.+++..-|..++.+|.+.
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 55578888888766555 345677888888878888888888888887654
No 358
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=54.87 E-value=2.1e+02 Score=27.72 Aligned_cols=146 Identities=9% Similarity=0.102 Sum_probs=77.4
Q ss_pred CChHHHHHHHhcCCC----C---ChhHHHHHHHHHHhCCCccHHHHHHHHHHHc---CCC--CCHhHHHHHHHHHhccCC
Q 037256 159 GQTDDGCKVFDEMSV----R---DLVSWTVMITAYEQAEKPEEALILFQKTQQE---GLL--SDSVTIVSVASAVGQLGD 226 (680)
Q Consensus 159 g~~~~A~~~f~~~~~----~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~--p~~~t~~~ll~~~~~~~~ 226 (680)
...++|+.-|.+..+ . .-.+.-.+|..+.+.+++++.++.|++|+.- .+. -+..+.++++...+.+.+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 345556555554432 1 1223445677777777777777777776431 111 233455666665555555
Q ss_pred hHHHHHHHHHHHHcc-CCCC----hhHHHHHHHHHHhcCCHHHHHHHHHhcCCC---------------ChhHHHHHHHH
Q 037256 227 VLKAQAVHGYAICNA-FLED----LCIQNSIVAMYARCGNVEKARLVFDMMEKR---------------DLISWNSMLTG 286 (680)
Q Consensus 227 ~~~a~~~~~~~~~~g-~~~~----~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~---------------~~~~~~~li~~ 286 (680)
.+.-..+++.-++.- -..+ -.+-+-|...|...|.+.+-.+++.++.+. =...|..=|..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 554444444332210 0011 112245666677777777766666665420 12345556677
Q ss_pred HHHcCChhHHHHHHHHHH
Q 037256 287 YIQNGQASEALLLFDEMQ 304 (680)
Q Consensus 287 ~~~~g~~~~A~~~~~~m~ 304 (680)
|..+.+-.+-..++++..
T Consensus 201 YT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQAL 218 (440)
T ss_pred hhhhcccHHHHHHHHHHH
Confidence 777777666666666654
No 359
>PF13934 ELYS: Nuclear pore complex assembly
Probab=54.38 E-value=1.6e+02 Score=27.94 Aligned_cols=20 Identities=15% Similarity=0.333 Sum_probs=8.8
Q ss_pred HHHHHHhcCChHHHHHHHHH
Q 037256 386 LIAGYGMHGHGRKALEFFSQ 405 (680)
Q Consensus 386 li~~~~~~g~~~~A~~l~~~ 405 (680)
++.++...|+.+.|+.+++.
T Consensus 114 Il~~L~~~~~~~lAL~y~~~ 133 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRA 133 (226)
T ss_pred HHHHHHHCCChhHHHHHHHh
Confidence 33344444444444444443
No 360
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=53.77 E-value=1e+02 Score=25.27 Aligned_cols=27 Identities=30% Similarity=0.500 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 037256 382 SWNVLIAGYGMHGHGRKALEFFSQMLE 408 (680)
Q Consensus 382 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 408 (680)
-|..|+.-|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 477888888888888888888888776
No 361
>PHA02875 ankyrin repeat protein; Provisional
Probab=53.57 E-value=2.9e+02 Score=28.98 Aligned_cols=77 Identities=10% Similarity=0.003 Sum_probs=38.4
Q ss_pred HhCCCccHHHHHHHHHHHcCCCCCHhH--HHHHHHHHhccCChHHHHHHHHHHHHccCCCChh--HHHHHHHHHHhcCCH
Q 037256 187 EQAEKPEEALILFQKTQQEGLLSDSVT--IVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLC--IQNSIVAMYARCGNV 262 (680)
Q Consensus 187 ~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~Li~~y~~~g~~ 262 (680)
++.|+. ++++.+.+.|..|+... -.+.+..++..|+.+.+ ..+++.|..++.. ...+.+...++.|+.
T Consensus 10 ~~~g~~----~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v----~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~ 81 (413)
T PHA02875 10 ILFGEL----DIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAI----KLLMKHGAIPDVKYPDIESELHDAVEEGDV 81 (413)
T ss_pred HHhCCH----HHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCccccCCCcccHHHHHHHCCCH
Confidence 445554 34455556676665432 23344455556665533 3444555444322 112334455566666
Q ss_pred HHHHHHHHh
Q 037256 263 EKARLVFDM 271 (680)
Q Consensus 263 ~~A~~~f~~ 271 (680)
+.+..+++.
T Consensus 82 ~~v~~Ll~~ 90 (413)
T PHA02875 82 KAVEELLDL 90 (413)
T ss_pred HHHHHHHHc
Confidence 666666654
No 362
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=53.05 E-value=47 Score=25.35 Aligned_cols=47 Identities=15% Similarity=0.111 Sum_probs=31.4
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCCHHHHHHHH
Q 037256 392 MHGHGRKALEFFSQMLEEGVKPDH--ITFTSILSACSHAGLIDEGRKCF 438 (680)
Q Consensus 392 ~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~ 438 (680)
...+.++|+..|....+.-..|.. .++..++.+++..|++++++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667788888777765333332 36777788888888887776653
No 363
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=52.81 E-value=3e+02 Score=28.88 Aligned_cols=73 Identities=14% Similarity=0.252 Sum_probs=53.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhcCCC-CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 037256 351 NAVMDMYAKCGDLDTAENMFNDIHPS-ERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSH 427 (680)
Q Consensus 351 ~~li~~y~k~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 427 (680)
..|+.-|.-.|++.+|.+..+++.-+ -...+.+.+++.+.-+.|+-...+.++++.-.+| .+|-+.+-.+|.+
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg----lIT~nQMtkGf~R 586 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG----LITTNQMTKGFER 586 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC----ceeHHHhhhhhhh
Confidence 45777888899999999999988323 2346778899999988888888888887776655 2444555555543
No 364
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=52.68 E-value=19 Score=30.51 Aligned_cols=31 Identities=16% Similarity=0.345 Sum_probs=23.0
Q ss_pred CCCchHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 037256 88 NGHCVETLELYSTMRRSGISSNSYTFPFVLKAC 120 (680)
Q Consensus 88 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 120 (680)
.|.-.+|..+|++|+..|-+||. |+.|+..+
T Consensus 108 ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 35566788888888888887764 77777654
No 365
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=52.49 E-value=1.1e+02 Score=25.08 Aligned_cols=27 Identities=19% Similarity=0.400 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHh
Q 037256 279 SWNSMLTGYIQNGQASEALLLFDEMQN 305 (680)
Q Consensus 279 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 305 (680)
-|..++.-|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 388999999999999999999999887
No 366
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=51.77 E-value=99 Score=28.96 Aligned_cols=74 Identities=11% Similarity=0.045 Sum_probs=42.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhhhc--CCCcChHHHHHHHHH
Q 037256 384 NVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHI-TFTSILSACSHAGLIDEGRKCFADMTKL--SVKPEVKHYACMVDM 459 (680)
Q Consensus 384 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~ 459 (680)
+.-++.+.+.++..+|+...++-++ -+|... +=..++..++-.|++++|..-++..-+. ...+-...|..+|++
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVk--akPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVK--AKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHh--cCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3445556666667777766666655 244333 4444556666677777776666655543 334445555555543
No 367
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=51.42 E-value=36 Score=22.66 Aligned_cols=20 Identities=20% Similarity=0.267 Sum_probs=8.8
Q ss_pred HHHHhcCChHHHHHHHHHHH
Q 037256 388 AGYGMHGHGRKALEFFSQML 407 (680)
Q Consensus 388 ~~~~~~g~~~~A~~l~~~m~ 407 (680)
.+|...|+.+.|.+++++..
T Consensus 7 ~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 7 RAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHcCChHHHHHHHHHHH
Confidence 34444444444444444444
No 368
>PRK11619 lytic murein transglycosylase; Provisional
Probab=50.94 E-value=4.1e+02 Score=29.97 Aligned_cols=52 Identities=6% Similarity=-0.050 Sum_probs=23.8
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHH
Q 037256 286 GYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYI 338 (680)
Q Consensus 286 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~ 338 (680)
.-.+.++++.+...+..|.... .-...-.--+..+....|+.+.|..++..+
T Consensus 321 ~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 321 MALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3335555555555555553321 112222333344444455555555555554
No 369
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=49.61 E-value=3.2e+02 Score=28.32 Aligned_cols=24 Identities=8% Similarity=-0.208 Sum_probs=11.9
Q ss_pred HHHHHHHHhhhcchHHHHHHHHHH
Q 037256 315 ALILVSACTYLGSRQLGRKFHGYI 338 (680)
Q Consensus 315 ~~~ll~a~~~~g~~~~a~~i~~~~ 338 (680)
+.-+..-|...|+++.|.+.+.++
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~ 176 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRA 176 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhh
Confidence 333444455555555555555543
No 370
>PRK13342 recombination factor protein RarA; Reviewed
Probab=49.30 E-value=3.4e+02 Score=28.59 Aligned_cols=101 Identities=14% Similarity=0.118 Sum_probs=57.3
Q ss_pred CCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhc---CCCChhHHHHHH
Q 037256 208 LSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMM---EKRDLISWNSML 284 (680)
Q Consensus 208 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m---~~~~~~~~~~li 284 (680)
..+......++..+ .|+...+..+++.+...+... ..+...+++... ..++...+..++
T Consensus 173 ~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~I----------------t~~~v~~~~~~~~~~~d~~~~~~~~~i 234 (413)
T PRK13342 173 ELDDEALDALARLA--NGDARRALNLLELAALGVDSI----------------TLELLEEALQKRAARYDKDGDEHYDLI 234 (413)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCC----------------CHHHHHHHHhhhhhccCCCccHHHHHH
Confidence 44555555554443 688888887777665431111 122222222221 112223344555
Q ss_pred HHHHH---cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhc
Q 037256 285 TGYIQ---NGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLG 326 (680)
Q Consensus 285 ~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 326 (680)
+++.+ ..+.+.|+..+.+|.+.|..|....-..+..++-..|
T Consensus 235 sa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 235 SALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 55554 5889999999999999998887666555555544433
No 371
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=48.70 E-value=2.8e+02 Score=27.37 Aligned_cols=111 Identities=14% Similarity=0.140 Sum_probs=68.3
Q ss_pred CccHHHHHHHHHHH-cCCCCCHhHHHHHHHHHhc-cC-ChHHHHHHHHHHHH-ccCCCChhHHHHHHHHHHhcCCHHHHH
Q 037256 191 KPEEALILFQKTQQ-EGLLSDSVTIVSVASAVGQ-LG-DVLKAQAVHGYAIC-NAFLEDLCIQNSIVAMYARCGNVEKAR 266 (680)
Q Consensus 191 ~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~~~~~-~~-~~~~a~~~~~~~~~-~g~~~~~~~~~~Li~~y~~~g~~~~A~ 266 (680)
...+|+.+|+..-. ..+.-|......+++.... .+ .+..--++.+.+.. .|-.++..+....+..+++.+++.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34556666663222 2345566666666666554 21 12222233333332 234566677778888888888888888
Q ss_pred HHHHhcCC-----CChhHHHHHHHHHHHcCChhHHHHHHH
Q 037256 267 LVFDMMEK-----RDLISWNSMLTGYIQNGQASEALLLFD 301 (680)
Q Consensus 267 ~~f~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~ 301 (680)
++++.... .|...|...|......|+..-..++..
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 88876543 478889999999999998765554443
No 372
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=48.22 E-value=2.4e+02 Score=26.53 Aligned_cols=120 Identities=19% Similarity=0.188 Sum_probs=72.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HhHHHHHHHH
Q 037256 417 TFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM-PLPPN----DSVWGALLLA 491 (680)
Q Consensus 417 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~a 491 (680)
|...-++...+.+.+++|+...+.-++.. +.|...--.+++.|+-.|++++|..-++-. .+.|+ ...|..++.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34455677788899999999988877753 445555667899999999999998777655 33443 4455555543
Q ss_pred HHHHHHHHHHHHHc--cCCCCC------chHHHHHHHHHhcCChhH-HHHHHHHHHhCCC
Q 037256 492 CRIHGEIAANYLFQ--LEPEHT------GYFVLMSNIYAASNKWRE-VGKLREDMKNKGL 542 (680)
Q Consensus 492 ~~~~~~~~~~~~~~--l~p~~~------~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~g~ 542 (680)
+.+-...++ ..|.-. -.-.++..+-.+.+.--+ +..+++...+.+.
T Consensus 82 -----ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~ 136 (273)
T COG4455 82 -----EAARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAP 136 (273)
T ss_pred -----HHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCC
Confidence 222233333 223211 123344444455553444 5556666665543
No 373
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=47.91 E-value=1.8e+02 Score=27.72 Aligned_cols=116 Identities=12% Similarity=-0.017 Sum_probs=73.4
Q ss_pred HcCCHHHHHHHHhhcCCCCCCHhH-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHccCCHHHHHH
Q 037256 359 KCGDLDTAENMFNDIHPSERNVSS-WNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTS-ILSACSHAGLIDEGRK 436 (680)
Q Consensus 359 k~g~~~~A~~~f~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~-ll~a~~~~g~~~~a~~ 436 (680)
...+++.|..-+.+.....|++.+ |+.-+..+.+..+++.+..--.+.++ +.||.+--.. +-.+......+++|+.
T Consensus 22 ~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~eaI~ 99 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEAIK 99 (284)
T ss_pred chhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHHHH
Confidence 345666777777666556777644 56677778888888888877777777 7888874333 3445567777888888
Q ss_pred HHHHhhhc----CCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256 437 CFADMTKL----SVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM 476 (680)
Q Consensus 437 ~~~~m~~~----~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 476 (680)
.+++.... .+.|-......|-++=-+.=...++.++.++.
T Consensus 100 ~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 100 VLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 88776432 45555555666555443333344444544443
No 374
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=46.42 E-value=1.9e+02 Score=28.29 Aligned_cols=85 Identities=13% Similarity=0.090 Sum_probs=37.9
Q ss_pred HHHHHhCCCccHHHHHHHHHHHc--CCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHh--
Q 037256 183 ITAYEQAEKPEEALILFQKTQQE--GLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYAR-- 258 (680)
Q Consensus 183 i~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~-- 258 (680)
|.+++..+++.+++...-+--+. .++|...-. -|-.|++.+......++-..-.+.--..+..-|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleL--CILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILEL--CILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHH--HHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 56666666666665554333221 223322222 222344555555555444444433222223334444444433
Q ss_pred ---cCCHHHHHHHH
Q 037256 259 ---CGNVEKARLVF 269 (680)
Q Consensus 259 ---~g~~~~A~~~f 269 (680)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 35555555544
No 375
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=46.27 E-value=78 Score=34.57 Aligned_cols=71 Identities=8% Similarity=0.148 Sum_probs=38.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHccCCHH------HHHHHHHHhhhcCCCcChHHHHHH
Q 037256 385 VLIAGYGMHGHGRKALEFFSQMLEEG--VKPDHITFTSILSACSHAGLID------EGRKCFADMTKLSVKPEVKHYACM 456 (680)
Q Consensus 385 ~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~~~t~~~ll~a~~~~g~~~------~a~~~~~~m~~~~~~p~~~~~~~l 456 (680)
+|..+|..+|++..+.++++...... -+.=...++..|+..++.|.++ .+.+.++.. .+.-|..+|..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a---~ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA---RLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh---hcCCcchHHHHH
Confidence 66777777777777777777766531 1112235666666666666543 223333322 234455566555
Q ss_pred HH
Q 037256 457 VD 458 (680)
Q Consensus 457 i~ 458 (680)
+.
T Consensus 110 ~~ 111 (1117)
T COG5108 110 CQ 111 (1117)
T ss_pred HH
Confidence 43
No 376
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=46.08 E-value=3e+02 Score=27.00 Aligned_cols=133 Identities=12% Similarity=0.085 Sum_probs=74.5
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHH-------HHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHH
Q 037256 389 GYGMHGHGRKALEFFSQMLEEGVKPDHIT-------FTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLG 461 (680)
Q Consensus 389 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-------~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 461 (680)
-..+.+++++|+..+.+....|+..|..+ ...+...|...|+...-.+......+ .+.-+.
T Consensus 12 ~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre------------~m~~ft 79 (421)
T COG5159 12 NAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSRE------------AMEDFT 79 (421)
T ss_pred HhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHH------------HHHHhc
Confidence 34567788899999999988887776544 44455566666665554444333222 111122
Q ss_pred hcCCHHHHHHHHHhCCCCCCHhH-HHHHHHHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHH
Q 037256 462 RAGCLYEAFDMIKQMPLPPNDSV-WGALLLACRIHGEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMK 538 (680)
Q Consensus 462 ~~g~~~~A~~~~~~m~~~p~~~~-~~~ll~a~~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 538 (680)
+..-..-...+|++.+..||..- ---++.+|...|.+.-++++.+.- -.-++.+|.+.|++.+|+.......
T Consensus 80 k~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~L-----e~Kli~l~y~~~~YsdalalIn~ll 152 (421)
T COG5159 80 KPKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLEL-----ECKLIYLLYKTGKYSDALALINPLL 152 (421)
T ss_pred chhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHHHHH
Confidence 22222223345555555555332 222444555445555555554322 2356778888899998888766553
No 377
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.02 E-value=2.4e+02 Score=25.97 Aligned_cols=89 Identities=15% Similarity=0.090 Sum_probs=53.9
Q ss_pred HHHhccCChHHHHHHHHHHHHccCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhH--HHHHHHHHHHcCChh
Q 037256 219 SAVGQLGDVLKAQAVHGYAICNAFLED--LCIQNSIVAMYARCGNVEKARLVFDMMEKRDLIS--WNSMLTGYIQNGQAS 294 (680)
Q Consensus 219 ~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~--~~~li~~~~~~g~~~ 294 (680)
......+++++|..-+.......-+.+ ..+--.|.......|.+|+|...++....++-.+ ...-...+...|+-+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~ 176 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQ 176 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchH
Confidence 344556666666666655543211111 1122234556677788888888888777664333 233345678888888
Q ss_pred HHHHHHHHHHhCC
Q 037256 295 EALLLFDEMQNSD 307 (680)
Q Consensus 295 ~A~~~~~~m~~~g 307 (680)
+|..-|.+..+.+
T Consensus 177 ~Ar~ay~kAl~~~ 189 (207)
T COG2976 177 EARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHcc
Confidence 8888888877764
No 378
>PF13934 ELYS: Nuclear pore complex assembly
Probab=45.12 E-value=2.6e+02 Score=26.59 Aligned_cols=71 Identities=15% Similarity=0.257 Sum_probs=40.3
Q ss_pred HHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 037256 352 AVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACS 426 (680)
Q Consensus 352 ~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 426 (680)
-++..+...|+.+.|..+++...+.-.+....+.++.. ..++...+|..+-+...+.. + ...+..++..|.
T Consensus 113 ~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~~~-~--~~l~e~l~~~~~ 183 (226)
T PF13934_consen 113 KILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA-LANGLVTEAFSFQRSYPDEL-R--RRLFEQLLEHCL 183 (226)
T ss_pred HHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH-HHcCCHHHHHHHHHhCchhh-h--HHHHHHHHHHHH
Confidence 35666666788888888887774444444444444444 45677777776665544311 0 224445555444
No 379
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=45.01 E-value=69 Score=33.63 Aligned_cols=111 Identities=15% Similarity=0.121 Sum_probs=59.7
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHccCCHHHHHHHHHHhhhcCCCcC-hHHHHHHHHHHHhcCCHHH
Q 037256 391 GMHGHGRKALEFFSQMLEEGVKPDHITFTSI-LSACSHAGLIDEGRKCFADMTKLSVKPE-VKHYACMVDMLGRAGCLYE 468 (680)
Q Consensus 391 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~ 468 (680)
...+.++.|..++.+.++ +.||...|-+. ..++.+.+++..|..=+..+++.. |+ ...|-.=..++.+.+++.+
T Consensus 15 l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 15 LKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred cccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHHHHHH
Confidence 345566777777777776 56665543332 246666666666666666555542 22 1111111222333445556
Q ss_pred HHHHHHhC-CCCCCHhHHHHHHHHHHHH-HHHHHHHHHc
Q 037256 469 AFDMIKQM-PLPPNDSVWGALLLACRIH-GEIAANYLFQ 505 (680)
Q Consensus 469 A~~~~~~m-~~~p~~~~~~~ll~a~~~~-~~~~~~~~~~ 505 (680)
|+..|+.. .+.|+..-..-.+.-|-.. .++.+++.+-
T Consensus 91 A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~ai~ 129 (476)
T KOG0376|consen 91 ALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKFEKAIL 129 (476)
T ss_pred HHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhccc
Confidence 66655554 4567766666666666655 3445554443
No 380
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=43.58 E-value=81 Score=21.99 Aligned_cols=34 Identities=29% Similarity=0.391 Sum_probs=20.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 037256 386 LIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSI 421 (680)
Q Consensus 386 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 421 (680)
+.-++.+.|++++|.+..+.+.+ +.|+..-...|
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L 40 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHH
Confidence 44456677777777777777777 66766544443
No 381
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=42.70 E-value=4.5e+02 Score=28.05 Aligned_cols=97 Identities=13% Similarity=0.088 Sum_probs=51.9
Q ss_pred HHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHH---HhCCCCCCCceeEEEECC---EEEEEEeCCCCCcccH
Q 037256 498 IAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDM---KNKGLKKPAAFSVIEYGK---DIQGFHTADRVNPYWK 571 (680)
Q Consensus 498 ~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m---~~~g~~~~~~~s~~~~~~---~~~~f~~~~~~~~~~~ 571 (680)
+..+.+.-...+.+.+..+-++.+...|++..|.+++... ...|..+.|.++.-...+ .||- .. ..|....
T Consensus 227 revK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~-~~--~~y~~~~ 303 (696)
T KOG2471|consen 227 REVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHY-QL--GCYQASS 303 (696)
T ss_pred HhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEee-eh--hhHHHHH
Confidence 3333444455566777778889999999999998877543 223333344333222222 2231 11 1232333
Q ss_pred HHHHHHHH-HHHHHHHcCcccCCccccc
Q 037256 572 EVYKKVES-MAVEIKMAGYMPDLSCALH 598 (680)
Q Consensus 572 ~i~~~~~~-l~~~m~~~g~~p~~~~~~~ 598 (680)
..+.++.+ .-.++ ..|++|.+.+.+.
T Consensus 304 ~~F~kAL~N~c~qL-~~g~~~~~~~tls 330 (696)
T KOG2471|consen 304 VLFLKALRNSCSQL-RNGLKPAKTFTLS 330 (696)
T ss_pred HHHHHHHHHHHHHH-hccCCCCcceehh
Confidence 33444443 33333 4588888876554
No 382
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=42.23 E-value=1.4e+02 Score=23.40 Aligned_cols=65 Identities=12% Similarity=0.177 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHhCCCccHH
Q 037256 129 GKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEKPEEA 195 (680)
Q Consensus 129 a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 195 (680)
+.++++.+++.|+- +......+-..-...|+.+.|+++++.++ +....|..+++++-+.|.-+-|
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 34556666666532 22222222222224577777888888777 7777777777777777665444
No 383
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=41.75 E-value=71 Score=30.29 Aligned_cols=44 Identities=16% Similarity=0.142 Sum_probs=37.4
Q ss_pred HHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 037256 496 GEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKN 539 (680)
Q Consensus 496 ~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 539 (680)
..+--.+++++.|+..-.++.|+........+++|+..+.+..+
T Consensus 63 v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~s 106 (284)
T KOG4642|consen 63 VEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYS 106 (284)
T ss_pred hhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 34445678899999988999999999999999999999998854
No 384
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=41.64 E-value=2.7e+02 Score=25.29 Aligned_cols=42 Identities=17% Similarity=0.328 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhcC
Q 037256 396 GRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKLS 445 (680)
Q Consensus 396 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 445 (680)
+++|.+.|++..+ .+|+..+|..-|..+. +|-+++.++.+.+
T Consensus 96 F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~------kap~lh~e~~~~~ 137 (186)
T PF06552_consen 96 FEKATEYFQKAVD--EDPNNELYRKSLEMAA------KAPELHMEIHKQG 137 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHH------THHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHh--cCCCcHHHHHHHHHHH------hhHHHHHHHHHHH
Confidence 4566667777776 6788888888777664 3555666665553
No 385
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=40.79 E-value=3.7e+02 Score=26.54 Aligned_cols=58 Identities=10% Similarity=0.223 Sum_probs=33.7
Q ss_pred CCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCC---CCCHhHHHHHHHHHHhcCChHHHHH
Q 037256 344 KIDATLRNAVMDMYAKCGDLDTAENMFNDIHPS---ERNVSSWNVLIAGYGMHGHGRKALE 401 (680)
Q Consensus 344 ~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 401 (680)
.++..+...++..+++.+++.+-.++++...+. ..|...|..+|..-...|+..-..+
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~k 259 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRK 259 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHH
Confidence 445555555666666666666666666554322 3456667777777766676644333
No 386
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=40.74 E-value=66 Score=23.23 Aligned_cols=25 Identities=8% Similarity=0.285 Sum_probs=12.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhh
Q 037256 418 FTSILSACSHAGLIDEGRKCFADMT 442 (680)
Q Consensus 418 ~~~ll~a~~~~g~~~~a~~~~~~m~ 442 (680)
-..++.++...|++++|.++.+.+.
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344555555555555555554443
No 387
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=40.66 E-value=1.4e+02 Score=25.17 Aligned_cols=58 Identities=10% Similarity=0.225 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhc-CCCcChHHHHHHH
Q 037256 398 KALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKL-SVKPEVKHYACMV 457 (680)
Q Consensus 398 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li 457 (680)
+..+-++....-.+-|+....-..|.||-+.+++..|.++|+-.+.+ | +....|-.++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g--~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCG--AQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcc--cHHHHHHHHH
Confidence 45555666666678899999999999999999999999999988776 4 3333565554
No 388
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=40.23 E-value=24 Score=35.17 Aligned_cols=51 Identities=6% Similarity=0.109 Sum_probs=40.5
Q ss_pred HHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCC
Q 037256 496 GEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKGLKKPA 546 (680)
Q Consensus 496 ~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 546 (680)
+++-...+++++|+...-|-.-+.+....|+|++|...+....+.+.....
T Consensus 167 airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~dE~~ 217 (377)
T KOG1308|consen 167 AIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYDEAN 217 (377)
T ss_pred hhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhccccHHH
Confidence 344556677888988888888888888899999999999999888775433
No 389
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=39.85 E-value=26 Score=25.38 Aligned_cols=30 Identities=17% Similarity=0.193 Sum_probs=20.7
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 037256 379 NVSSWNVLIAGYGMHGHGRKALEFFSQMLE 408 (680)
Q Consensus 379 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 408 (680)
|..---.+|.+|.+.|++++|.++.+++.+
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333344567888888888888888887765
No 390
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=39.59 E-value=4.5e+02 Score=27.22 Aligned_cols=26 Identities=8% Similarity=-0.263 Sum_probs=14.8
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCH
Q 037256 390 YGMHGHGRKALEFFSQMLEEGVKPDH 415 (680)
Q Consensus 390 ~~~~g~~~~A~~l~~~m~~~g~~p~~ 415 (680)
+.+.+++..|.++|+++.+..+.|..
T Consensus 140 l~n~~dy~aA~~~~~~L~~r~l~~~~ 165 (380)
T TIGR02710 140 AINAFDYLFAHARLETLLRRLLSAVN 165 (380)
T ss_pred HHHhcChHHHHHHHHHHHhcccChhh
Confidence 34556666666666666665444443
No 391
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.16 E-value=5.1e+02 Score=27.65 Aligned_cols=211 Identities=13% Similarity=0.100 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCCC----------hhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCH---------hHHHHHHHHHh
Q 037256 162 DDGCKVFDEMSVRD----------LVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDS---------VTIVSVASAVG 222 (680)
Q Consensus 162 ~~A~~~f~~~~~~~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---------~t~~~ll~~~~ 222 (680)
|+|....++.++.| ......++-+-.-.|++.+|++-...|.+.-..... ..-..+.--|.
T Consensus 299 De~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~ 378 (629)
T KOG2300|consen 299 DEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSH 378 (629)
T ss_pred HHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhh
Q ss_pred ccCChHHHHHHHHHHHHccCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHH--------HHHHHH--Hc
Q 037256 223 QLGDVLKAQAVHGYAICNAFLED--LCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNS--------MLTGYI--QN 290 (680)
Q Consensus 223 ~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~--------li~~~~--~~ 290 (680)
..+.++.|+.-|....+.--..| ...-..+.-.|.+.|+.+.-.++.+.+..+|..++.+ .+.++. ..
T Consensus 379 sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~q 458 (629)
T KOG2300|consen 379 SVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQ 458 (629)
T ss_pred hcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHh
Q ss_pred CChhHHHHHHHHHHhC-----CCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHH-----cCCCCchHHHHHHHHHHHHc
Q 037256 291 GQASEALLLFDEMQNS-----DCKPNPVTALILVSACTYLGSRQLGRKFHGYIIN-----SNMKIDATLRNAVMDMYAKC 360 (680)
Q Consensus 291 g~~~~A~~~~~~m~~~-----g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~-----~~~~~~~~~~~~li~~y~k~ 360 (680)
+++.||..++++-.+. ..+...-....+-..+...|+..+++....-..+ .+++.-......+-+.|..+
T Consensus 459 n~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~ 538 (629)
T KOG2300|consen 459 NDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQAL 538 (629)
T ss_pred ccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHh
Q ss_pred CC--HHHHHHHHhh
Q 037256 361 GD--LDTAENMFND 372 (680)
Q Consensus 361 g~--~~~A~~~f~~ 372 (680)
|+ .++..+.|..
T Consensus 539 g~~~~~~e~e~~~~ 552 (629)
T KOG2300|consen 539 GEKGNEMENEAFRK 552 (629)
T ss_pred CcchhhHHHHHHHH
No 392
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.14 E-value=6.6e+02 Score=29.00 Aligned_cols=145 Identities=15% Similarity=0.162 Sum_probs=70.7
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHH-----HHHHH-h
Q 037256 149 AALVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVS-----VASAV-G 222 (680)
Q Consensus 149 ~~Li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-----ll~~~-~ 222 (680)
..-.+.|...+++..|.+++-++ ..++-.+.--|....+.+ ++..|-.=+-..++|...+=.. ++..+ .
T Consensus 393 ~~qAdf~f~~k~y~~AA~~yA~t----~~~FEEVaLKFl~~~~~~-~L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~ 467 (911)
T KOG2034|consen 393 LKQADFLFQDKEYLRAAEIYAET----LSSFEEVALKFLEINQER-ALRTFLDKKLDRLTPEDKTQRDALVTWLLELYLE 467 (911)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHh----hhhHHHHHHHHHhcCCHH-HHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Confidence 33345566667777777777766 334444444455555544 5555433333344444333222 12211 1
Q ss_pred ccCChH----HHHHHHHHH--------HH-ccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 037256 223 QLGDVL----KAQAVHGYA--------IC-NAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQ 289 (680)
Q Consensus 223 ~~~~~~----~a~~~~~~~--------~~-~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~ 289 (680)
+.++++ ++..-+..- .+ .....+.....+........|+.+....+-.-|.. |..++.-+.+
T Consensus 468 ~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~~l~~~~~~~e~ll~fA~l~~d-----~~~vv~~~~q 542 (911)
T KOG2034|consen 468 QLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVYQLLASHGRQEELLQFANLIKD-----YEFVVSYWIQ 542 (911)
T ss_pred HHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHccCHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 222221 222211111 10 11112223334444555566666666555444332 5667777888
Q ss_pred cCChhHHHHHHHHH
Q 037256 290 NGQASEALLLFDEM 303 (680)
Q Consensus 290 ~g~~~~A~~~~~~m 303 (680)
.+.+++|++++..-
T Consensus 543 ~e~yeeaLevL~~~ 556 (911)
T KOG2034|consen 543 QENYEEALEVLLNQ 556 (911)
T ss_pred HHHHHHHHHHHHhc
Confidence 88888888876543
No 393
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=38.63 E-value=1.1e+02 Score=20.65 Aligned_cols=29 Identities=10% Similarity=0.187 Sum_probs=13.5
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 037256 393 HGHGRKALEFFSQMLEEGVKPDHITFTSI 421 (680)
Q Consensus 393 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 421 (680)
.|-..++..++++|.+.|+..+...+..+
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~~~~ 43 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLIEEI 43 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHHHHH
Confidence 34444444455555554544444444433
No 394
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=38.26 E-value=2.5e+02 Score=23.79 Aligned_cols=43 Identities=9% Similarity=0.176 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHH
Q 037256 398 KALEFFSQMLEEGVKPDHI-TFTSILSACSHAGLIDEGRKCFAD 440 (680)
Q Consensus 398 ~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~ 440 (680)
.+.++|..|...|+--... -|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 6667777777766555443 455555566666777777766654
No 395
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=37.81 E-value=4.7e+02 Score=26.94 Aligned_cols=118 Identities=9% Similarity=0.144 Sum_probs=68.7
Q ss_pred CCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHH-HHHHHH------hcCChHHHHHHHHHHHHcCCCCCHH
Q 037256 344 KIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNV-LIAGYG------MHGHGRKALEFFSQMLEEGVKPDHI 416 (680)
Q Consensus 344 ~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~-li~~~~------~~g~~~~A~~l~~~m~~~g~~p~~~ 416 (680)
+-.+.+.-.+-..+...|+.+.|.++.++. ..++.. +...+. ..|.. ++ .-...-|..
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRA------Lf~~e~~~~~~F~~~~~~~~~g~~--------rL-~~~~~eNR~ 101 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERA------LFAFERAFHPSFSPFRSNLTSGNC--------RL-DYRRPENRQ 101 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH------HHHHHHHHHHHhhhhhcccccCcc--------cc-CCccccchH
Confidence 445556666667777788888877777765 111110 011110 00000 00 000111333
Q ss_pred HHHHH---HHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHH-hcCCHHHHHHHHHhC
Q 037256 417 TFTSI---LSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLG-RAGCLYEAFDMIKQM 476 (680)
Q Consensus 417 t~~~l---l~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m 476 (680)
.|.++ +....+.|-+..|.++.+-+...+..-|+.....+||.|+ ++++++--+++++..
T Consensus 102 fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 102 FFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 44443 4567788999999999988888765557777777888876 777777777777754
No 396
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=37.57 E-value=64 Score=31.80 Aligned_cols=46 Identities=24% Similarity=0.243 Sum_probs=35.1
Q ss_pred CCCHhH-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037256 377 ERNVSS-WNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSIL 422 (680)
Q Consensus 377 ~~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 422 (680)
.+|..+ ||..|..-.+.|+.++|+.+++|..+.|+.--..||...+
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 345444 5788888899999999999999999988776666665544
No 397
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=37.32 E-value=61 Score=31.96 Aligned_cols=39 Identities=21% Similarity=0.317 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHH
Q 037256 279 SWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALI 317 (680)
Q Consensus 279 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 317 (680)
-|+..|..-.+.||+++|+.++++.++.|+.--..||..
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 467899999999999999999999999987655555543
No 398
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=37.28 E-value=37 Score=28.89 Aligned_cols=32 Identities=19% Similarity=0.264 Sum_probs=24.4
Q ss_pred HHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 037256 288 IQNGQASEALLLFDEMQNSDCKPNPVTALILVSA 321 (680)
Q Consensus 288 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 321 (680)
-..|.-.+|..+|++|++.|-+||. |..|+..
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 3456778899999999999999986 4455544
No 399
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=37.18 E-value=2.4e+02 Score=26.63 Aligned_cols=95 Identities=21% Similarity=0.241 Sum_probs=45.3
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHHHHH--HHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHH
Q 037256 379 NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKP---DHITFT--SILSACSHAGLIDEGRKCFADMTKLSVKPEVKHY 453 (680)
Q Consensus 379 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~--~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 453 (680)
...-.|.|+--|.-+..+.+|.+.|.. +.|+.| |..++. .-+......|++++|.+....+...-+.-|...+
T Consensus 25 ~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l~ 102 (228)
T KOG2659|consen 25 MREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRELF 102 (228)
T ss_pred chhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhHH
Confidence 333445555555544445555555432 333444 222222 2344456667777776666655443222332221
Q ss_pred HHHH----HHHHhcCCHHHHHHHHHh
Q 037256 454 ACMV----DMLGRAGCLYEAFDMIKQ 475 (680)
Q Consensus 454 ~~li----~~~~~~g~~~~A~~~~~~ 475 (680)
--|. --+.|.|..++|+++.+.
T Consensus 103 F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 103 FHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 1111 113566777777777765
No 400
>PRK13342 recombination factor protein RarA; Reviewed
Probab=36.65 E-value=5.3e+02 Score=27.16 Aligned_cols=47 Identities=26% Similarity=0.320 Sum_probs=31.3
Q ss_pred HHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 037256 383 WNVLIAGYGM---HGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAG 429 (680)
Q Consensus 383 ~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 429 (680)
...+++++.+ .++.+.|+..+.+|.+.|..|..+.=..+..++...|
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 4445555544 4788999999999999888887665544444444433
No 401
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=36.16 E-value=1.1e+02 Score=20.77 Aligned_cols=35 Identities=14% Similarity=0.197 Sum_probs=28.4
Q ss_pred HHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHH
Q 037256 424 ACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVD 458 (680)
Q Consensus 424 a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 458 (680)
..-+.|.++++..++++|.+.|+.-+...|..++.
T Consensus 11 ~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 11 LAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 44567888899999999988899888888877654
No 402
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=35.73 E-value=1.7e+02 Score=28.22 Aligned_cols=56 Identities=16% Similarity=0.130 Sum_probs=30.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH----cC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 037256 385 VLIAGYGMHGHGRKALEFFSQMLE----EG-VKPDHITFTSILSACSHAGLIDEGRKCFAD 440 (680)
Q Consensus 385 ~li~~~~~~g~~~~A~~l~~~m~~----~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 440 (680)
.|...|...|++++|+++|+.+.. .| ..+...+...++.++.+.|+.+....+--+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 345566677777777777776642 12 122233444455555666666655554433
No 403
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=35.62 E-value=4.2e+02 Score=26.75 Aligned_cols=84 Identities=18% Similarity=0.253 Sum_probs=49.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc---CCCCCHHHHH--HHHHHHHccCCHHHHHHHHHHhhh-----cCCCcChHH-HH
Q 037256 386 LIAGYGMHGHGRKALEFFSQMLEE---GVKPDHITFT--SILSACSHAGLIDEGRKCFADMTK-----LSVKPEVKH-YA 454 (680)
Q Consensus 386 li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~t~~--~ll~a~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~-~~ 454 (680)
++...-+.++.++|++.++++.+. --.|+.+.|. .....+...|+.+++.+++++..+ .+++|++.+ |.
T Consensus 81 ~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY 160 (380)
T KOG2908|consen 81 LLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFY 160 (380)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHH
Confidence 334444556778888888777653 1345666443 334456677888888888777666 377775443 44
Q ss_pred HHHHH-HHhcCCHHHH
Q 037256 455 CMVDM-LGRAGCLYEA 469 (680)
Q Consensus 455 ~li~~-~~~~g~~~~A 469 (680)
.+-.- |-+.|++..+
T Consensus 161 ~lssqYyk~~~d~a~y 176 (380)
T KOG2908|consen 161 SLSSQYYKKIGDFASY 176 (380)
T ss_pred HHHHHHHHHHHhHHHH
Confidence 44333 3345555543
No 404
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=35.21 E-value=6.5e+02 Score=27.77 Aligned_cols=52 Identities=6% Similarity=-0.127 Sum_probs=28.0
Q ss_pred HhCCCchHHHHHHHHHHh-------CCCCCCcccHHHHHHHHhccC-----ChHHHHHHHHHHHHhC
Q 037256 86 ANNGHCVETLELYSTMRR-------SGISSNSYTFPFVLKACASNS-----LILEGKVVHGDIIRTG 140 (680)
Q Consensus 86 ~~~g~~~~A~~~~~~m~~-------~g~~p~~~t~~~ll~~~~~~~-----~~~~a~~~~~~~~~~g 140 (680)
....+.+.|+..|+.+.+ .| +......+-..|.+.. +.+.|..++....+.|
T Consensus 260 g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g 323 (552)
T KOG1550|consen 260 GVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG 323 (552)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC
Confidence 344566777777766655 33 2233444444444422 4455666666666655
No 405
>PHA03100 ankyrin repeat protein; Provisional
Probab=34.80 E-value=6e+02 Score=27.20 Aligned_cols=15 Identities=13% Similarity=-0.082 Sum_probs=8.3
Q ss_pred hcCChHHHHHHHhcC
Q 037256 157 KCGQTDDGCKVFDEM 171 (680)
Q Consensus 157 ~~g~~~~A~~~f~~~ 171 (680)
..|+.+-...+++.-
T Consensus 117 ~~~~~~iv~~Ll~~g 131 (480)
T PHA03100 117 KSNSYSIVEYLLDNG 131 (480)
T ss_pred ccChHHHHHHHHHcC
Confidence 556666555555543
No 406
>PF08225 Antimicrobial19: Pseudin antimicrobial peptide; InterPro: IPR013156 Pseudins are a subfamily of the FSAP family (Frog Secreted Active Peptides) extracted from the skin of the paradoxical frog Pseudis paradoxa (Paradoxical frog). The pseudins belong to the class of cationic, amphipathic-helical antimicrobial peptides [].; GO: 0006952 defense response
Probab=34.40 E-value=28 Score=18.61 Aligned_cols=13 Identities=15% Similarity=0.360 Sum_probs=9.8
Q ss_pred cchhhhHHHHHhh
Q 037256 640 CNDCHSAFRFISY 652 (680)
Q Consensus 640 ~~~~~~~~~~~s~ 652 (680)
-...|+++|+||.
T Consensus 9 ~qglhe~ikli~n 21 (23)
T PF08225_consen 9 FQGLHEVIKLINN 21 (23)
T ss_pred HHHHHHHHHHHhc
Confidence 3467999998874
No 407
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=34.28 E-value=4.9e+02 Score=26.02 Aligned_cols=31 Identities=10% Similarity=0.185 Sum_probs=19.0
Q ss_pred CChHHHHHHhhhccCCCCCcchHHHHHHHHH
Q 037256 56 GEPNTARSLFNSIHNDKSYSFLWNTMIRAYA 86 (680)
Q Consensus 56 g~~~~A~~~f~~~~~~~p~~~~~~~li~~~~ 86 (680)
-++..+.++...+....++...|..++..+.
T Consensus 54 ~~~~~~l~l~~~~~~~E~~~~vw~~~~~~l~ 84 (324)
T PF11838_consen 54 LSYSDFLDLLEYLLPNETDYVVWSTALSNLS 84 (324)
T ss_dssp S-HHHHHHHHGGG-GT--SHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 3567888888887333447778887776553
No 408
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=33.61 E-value=2.6e+02 Score=26.78 Aligned_cols=42 Identities=10% Similarity=-0.001 Sum_probs=34.3
Q ss_pred HHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 037256 498 IAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKN 539 (680)
Q Consensus 498 ~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 539 (680)
+-...++...|.|.-+|+.-+.+.+..=+.++|..-+.+..+
T Consensus 251 eh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 251 EHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 334567789999999999999998888888888888887765
No 409
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=33.31 E-value=2.1e+02 Score=31.02 Aligned_cols=127 Identities=9% Similarity=0.059 Sum_probs=80.1
Q ss_pred hHHHHHHhhhccCCCCCcchHHHH--HHHH-HhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHH
Q 037256 58 PNTARSLFNSIHNDKSYSFLWNTM--IRAY-ANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHG 134 (680)
Q Consensus 58 ~~~A~~~f~~~~~~~p~~~~~~~l--i~~~-~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 134 (680)
-+-|..+|-.|.+. +...|-.| ...| .-.|+...|...+.......+.-..+....|.+...+.+....|-.++.
T Consensus 589 ~e~~~~~~~~~~~~--~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~ 666 (886)
T KOG4507|consen 589 EEIGSFLFHAINKP--NAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLL 666 (886)
T ss_pred HHHHHHHHHHhcCC--CCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHH
Confidence 34556666666655 54444332 1222 3368888888887776554333344556666677777777777777777
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhHHHHHHHHHH
Q 037256 135 DIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSV---RDLVSWTVMITAYE 187 (680)
Q Consensus 135 ~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~ 187 (680)
+.+... ...+.++-.+.++|.-..+++.|++.|.+... .+.+.-+.|...-+
T Consensus 667 q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 667 QALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 766655 45566677778888888888888888876543 34555566554443
No 410
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=33.31 E-value=4.8e+02 Score=25.70 Aligned_cols=94 Identities=14% Similarity=0.116 Sum_probs=56.9
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHH----HcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcCh----
Q 037256 380 VSSWNVLIAGYGMHGHGRKALEFFSQML----EEGVKPDHI-TFTSILSACSHAGLIDEGRKCFADMTKLSVKPEV---- 450 (680)
Q Consensus 380 ~~~~~~li~~~~~~g~~~~A~~l~~~m~----~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~---- 450 (680)
...|..+..-|++.++.+.+.+..++.. ..|.+.|.. +-..|.-.|....-+++-++..+.|.+.|-..+.
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 4567778888888888888877666544 346666654 3333333455555677788888888887544432
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHh
Q 037256 451 KHYACMVDMLGRAGCLYEAFDMIKQ 475 (680)
Q Consensus 451 ~~~~~li~~~~~~g~~~~A~~~~~~ 475 (680)
.+|.-+-.+ ...++.+|-.++..
T Consensus 195 K~Y~Gi~~m--~~RnFkeAa~Ll~d 217 (412)
T COG5187 195 KVYKGIFKM--MRRNFKEAAILLSD 217 (412)
T ss_pred HHHHHHHHH--HHHhhHHHHHHHHH
Confidence 233332222 23456666666554
No 411
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=33.19 E-value=2.4e+02 Score=22.12 Aligned_cols=39 Identities=13% Similarity=0.184 Sum_probs=26.9
Q ss_pred HcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHH
Q 037256 359 KCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKAL 400 (680)
Q Consensus 359 k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 400 (680)
..|+.+.|.+++..+ . +....|..+++++...|+.+-|.
T Consensus 48 ~~g~~~~ar~LL~~L--~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 48 NHGNESGARELLKRI--V-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred ccCcHHHHHHHHHHh--c-cCCcHHHHHHHHHHHcCchhhhh
Confidence 457778888888887 4 55556777777777777655543
No 412
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=32.96 E-value=84 Score=28.94 Aligned_cols=33 Identities=6% Similarity=0.173 Sum_probs=20.0
Q ss_pred CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 037256 376 SERNVSSWNVLIAGYGMHGHGRKALEFFSQMLE 408 (680)
Q Consensus 376 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 408 (680)
..|+...|..++..+...|+.++|.+...++..
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 355666666666666666666666666666555
No 413
>PRK10941 hypothetical protein; Provisional
Probab=32.91 E-value=3.7e+02 Score=26.40 Aligned_cols=73 Identities=10% Similarity=0.013 Sum_probs=39.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhhhc-CCCcChHHHHHHH
Q 037256 383 WNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHI-TFTSILSACSHAGLIDEGRKCFADMTKL-SVKPEVKHYACMV 457 (680)
Q Consensus 383 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li 457 (680)
.+.+-.+|.+.++++.|++..+.+.. +.|+.. -+.--.-.|.+.|.+..|..=++..++. .-.|+.......+
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~--l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQ--FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 34555566666666666666666666 455543 2333333456666666666655555544 3344444433333
No 414
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=32.80 E-value=3.3e+02 Score=27.04 Aligned_cols=52 Identities=21% Similarity=0.272 Sum_probs=31.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 037256 252 IVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQN 305 (680)
Q Consensus 252 Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 305 (680)
++..+.+..++....+.+..+. .+..-...+..+...|++..|++++.+..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3444444445554444444442 233345567777888888888888877764
No 415
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=32.78 E-value=35 Score=20.02 Aligned_cols=27 Identities=19% Similarity=0.329 Sum_probs=14.0
Q ss_pred CChHHHHHHhhhccCCCC-CcchHHHHH
Q 037256 56 GEPNTARSLFNSIHNDKS-YSFLWNTMI 82 (680)
Q Consensus 56 g~~~~A~~~f~~~~~~~p-~~~~~~~li 82 (680)
|+++.|+.+|+.+...-| +...|...+
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 345566666666555444 344454443
No 416
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=32.66 E-value=1.2e+02 Score=32.81 Aligned_cols=122 Identities=13% Similarity=0.070 Sum_probs=59.5
Q ss_pred HHHHHHhcCCCChhHHHHHHH--H-HHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHc
Q 037256 265 ARLVFDMMEKRDLISWNSMLT--G-YIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINS 341 (680)
Q Consensus 265 A~~~f~~m~~~~~~~~~~li~--~-~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~ 341 (680)
+-.+|..|.+++...|-+|=. . +--.|+...|.+.+.........-..+....+.+...+.|....|..++.+.+..
T Consensus 592 ~~~~~~~~~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~ 671 (886)
T KOG4507|consen 592 GSFLFHAINKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAI 671 (886)
T ss_pred HHHHHHHhcCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhh
Confidence 444455555544444432211 1 1234666666666655543321112233444444455555555555555544443
Q ss_pred CCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHH
Q 037256 342 NMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLI 387 (680)
Q Consensus 342 ~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li 387 (680)
. ...+.++-.+.++|.-..+++.|.+.|++..+..| +.+.-+.|.
T Consensus 672 ~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~ 717 (886)
T KOG4507|consen 672 N-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLK 717 (886)
T ss_pred c-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHH
Confidence 3 33445555666666666667777666666544333 344444443
No 417
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.36 E-value=8.7e+02 Score=28.40 Aligned_cols=250 Identities=12% Similarity=0.032 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCccHHHHHHHHHHH---cCCCCCHhHHHHHHHHHhccCCh--HHHHHHHHHHHHccCCCChhHHHH--
Q 037256 179 WTVMITAYEQAEKPEEALILFQKTQQ---EGLLSDSVTIVSVASAVGQLGDV--LKAQAVHGYAICNAFLEDLCIQNS-- 251 (680)
Q Consensus 179 ~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~t~~~ll~~~~~~~~~--~~a~~~~~~~~~~g~~~~~~~~~~-- 251 (680)
|..|+..|...|..++|++++.+... ..-.--..-+-.++.-....++. +...++-....+........+++.
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Q ss_pred ----------HHHHHHhcCCHHHHHHHHHhcCC----CChhHHHHHHHHHHHcCC--------hhHHHHH--HHHHHhCC
Q 037256 252 ----------IVAMYARCGNVEKARLVFDMMEK----RDLISWNSMLTGYIQNGQ--------ASEALLL--FDEMQNSD 307 (680)
Q Consensus 252 ----------Li~~y~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~--------~~~A~~~--~~~m~~~g 307 (680)
.+--|.+....+-+...++.+.. .+..-.+.++..|+..=+ .+++.+. -+++...-
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l 666 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFL 666 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHHh
Q ss_pred CCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHH
Q 037256 308 CKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVL 386 (680)
Q Consensus 308 ~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~l 386 (680)
..-|...-..++.-....+-+++..-++.++.+.. .+|--..-..++++.|...-...-+..+ +...|-.+
T Consensus 667 ~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe--------~aL~Iyv~~L~d~~~A~~Yc~~~y~~~~~~~~~y~~l 738 (877)
T KOG2063|consen 667 ESSDLYDPQLLLERLNGDELYEERAILLGRLGKHE--------EALHIYVHELDDIDAAESYCLPQYESDKTNKEIYLTL 738 (877)
T ss_pred hhhcccCcchhhhhccchhHHHHHHHHHhhhhhHH--------HHHHHHHHHhcchhHHHHHHHHhccCCCcccHHHHHH
Q ss_pred HHHHHhc--CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 037256 387 IAGYGMH--GHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRK 436 (680)
Q Consensus 387 i~~~~~~--g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 436 (680)
+..|... +--.....+.+-+...+-+.|..-+.-++-.+...++......
T Consensus 739 L~~~l~~~~d~~~~~~~il~~l~~h~~r~d~~~~~~~Lp~~~sl~~~~~~l~ 790 (877)
T KOG2063|consen 739 LRIYLNPIHDYKSGPLYILNFLQKHADRLDLAQVLKLLPDDISLKDLCSFLS 790 (877)
T ss_pred HHHHhcchhhccccchhhhhHHHhhhhhcCHHHHHHhCCccCcHhHHHHHHH
No 418
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=32.27 E-value=4.6e+02 Score=25.08 Aligned_cols=56 Identities=18% Similarity=0.281 Sum_probs=39.9
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 037256 265 ARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSAC 322 (680)
Q Consensus 265 A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 322 (680)
+..+|+-..+|.+.....|+..+. .+++++|.+++.++-+.|..|... .+++.+++
T Consensus 227 ~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Di-i~~~FRv~ 282 (333)
T KOG0991|consen 227 QENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDI-ITTLFRVV 282 (333)
T ss_pred hhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHH-HHHHHHHH
Confidence 455666666788877777777654 567999999999999999888654 23344443
No 419
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=31.64 E-value=5e+02 Score=25.31 Aligned_cols=159 Identities=15% Similarity=0.132 Sum_probs=71.6
Q ss_pred hcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHH----HHHHhCCCCCCHhhHHHHHHHHhhhcchH-HHH
Q 037256 258 RCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLF----DEMQNSDCKPNPVTALILVSACTYLGSRQ-LGR 332 (680)
Q Consensus 258 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~a~~~~g~~~-~a~ 332 (680)
+.+++++|.+++.. =...+.+.|+...|.++- +-..+.+.++|......++..+...+.-+ .-.
T Consensus 2 ~~kky~eAidLL~~-----------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYS-----------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHH-----------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 44566666665432 122344555544444332 22233455566555555555444332211 112
Q ss_pred HHHHHHH---HcC--CCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 037256 333 KFHGYII---NSN--MKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQML 407 (680)
Q Consensus 333 ~i~~~~~---~~~--~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 407 (680)
.+.+.++ +.+ ..-++.....+...|.+.|++.+|+.-|-.- ..++...+-.++.-....|...++
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~--~~~~~~~~~~ll~~~~~~~~~~e~-------- 140 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLG--TDPSAFAYVMLLEEWSTKGYPSEA-------- 140 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS---HHHHHHHHHHHHHHHHHTSS--H--------
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhc--CChhHHHHHHHHHHHHHhcCCcch--------
Confidence 2222222 222 2246788888999999999999999888544 233333222222222222222221
Q ss_pred HcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhc
Q 037256 408 EEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKL 444 (680)
Q Consensus 408 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 444 (680)
|...-..++ -|...+++..|...++...+.
T Consensus 141 ------dlfi~RaVL-~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 141 ------DLFIARAVL-QYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp ------HHHHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred ------hHHHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 111112222 355667788888777665543
No 420
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=31.16 E-value=53 Score=32.86 Aligned_cols=90 Identities=13% Similarity=0.008 Sum_probs=66.4
Q ss_pred CChHHHHHHhhhccCCCC-CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCc-ccHHHHHHHHhccCChHHHHHHH
Q 037256 56 GEPNTARSLFNSIHNDKS-YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNS-YTFPFVLKACASNSLILEGKVVH 133 (680)
Q Consensus 56 g~~~~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~ 133 (680)
|.++.|++.|.......| ....|..--+++.+.+.+..|++=+....+. .||. .-|-.--.+-...|+++++...+
T Consensus 128 G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 128 GEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHHHHHH
Confidence 999999999998888866 4556666677888889999999988887764 4443 23333334445678999999999
Q ss_pred HHHHHhCCCCchhH
Q 037256 134 GDIIRTGFLSDSYV 147 (680)
Q Consensus 134 ~~~~~~g~~~~~~~ 147 (680)
....+.++.+....
T Consensus 206 ~~a~kld~dE~~~a 219 (377)
T KOG1308|consen 206 ALACKLDYDEANSA 219 (377)
T ss_pred HHHHhccccHHHHH
Confidence 99988887665443
No 421
>PF15161 Neuropep_like: Neuropeptide-like
Probab=30.43 E-value=32 Score=23.77 Aligned_cols=17 Identities=35% Similarity=0.698 Sum_probs=12.1
Q ss_pred ecccccchhhhHHHHHhh
Q 037256 635 KNLRVCNDCHSAFRFISY 652 (680)
Q Consensus 635 ~~l~~~~~~~~~~~~~s~ 652 (680)
---|-|.|||.+. |+.+
T Consensus 11 aesRPCVDCHAFe-fmqR 27 (65)
T PF15161_consen 11 AESRPCVDCHAFE-FMQR 27 (65)
T ss_pred CCCCCchhhHHHH-HHHH
Confidence 3467899999765 5554
No 422
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=29.10 E-value=2.9e+02 Score=24.11 Aligned_cols=45 Identities=13% Similarity=0.104 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHh
Q 037256 178 SWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVG 222 (680)
Q Consensus 178 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 222 (680)
.-..++..+.+.++.-.|.++|+++.+.+...+..|.-..|..+.
T Consensus 22 qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~ 66 (145)
T COG0735 22 QRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLE 66 (145)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHH
Confidence 344555666666666667777777776665555555444444433
No 423
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=28.74 E-value=6.8e+02 Score=26.01 Aligned_cols=55 Identities=7% Similarity=-0.089 Sum_probs=34.0
Q ss_pred HHHhCCCccHHHHHHHHHHHcCCCCCHh--HHHHHHHHHh--ccCChHHHHHHHHHHHHc
Q 037256 185 AYEQAEKPEEALILFQKTQQEGLLSDSV--TIVSVASAVG--QLGDVLKAQAVHGYAICN 240 (680)
Q Consensus 185 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~--~~~~~~~a~~~~~~~~~~ 240 (680)
.+.+.+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++...+.
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344778888888888888876 555554 2333333333 345666777777766544
No 424
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=28.70 E-value=2.5e+02 Score=23.76 Aligned_cols=58 Identities=10% Similarity=0.028 Sum_probs=36.6
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 037256 94 TLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALV 152 (680)
Q Consensus 94 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li 152 (680)
..+-+..+....+.|+.......|++|.+.+++..|..+++-+... ..+...+|-.++
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHH
Confidence 3444455555667778888888888888888888888888766432 223333444443
No 425
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=28.65 E-value=1.3e+02 Score=25.82 Aligned_cols=14 Identities=14% Similarity=0.069 Sum_probs=7.3
Q ss_pred chHHHHHHHHHHHH
Q 037256 327 SRQLGRKFHGYIIN 340 (680)
Q Consensus 327 ~~~~a~~i~~~~~~ 340 (680)
+..++..+++.+.+
T Consensus 50 dv~~GI~iLe~l~~ 63 (149)
T KOG3364|consen 50 DVQEGIVILEDLLK 63 (149)
T ss_pred HHHHhHHHHHHHhh
Confidence 44555555555554
No 426
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=28.55 E-value=6.9e+02 Score=27.69 Aligned_cols=61 Identities=13% Similarity=0.246 Sum_probs=22.6
Q ss_pred CHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhc
Q 037256 311 NPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDI 373 (680)
Q Consensus 311 ~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~ 373 (680)
+.....-++..|.+.|-.+.+..+.+.+-..-. ...-|..-+..+.++|+......+-+.+
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~l 464 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRL 464 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH---------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 444455556666666666666666555433221 1123344455556666666555554444
No 427
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=28.49 E-value=1.2e+02 Score=22.27 Aligned_cols=49 Identities=8% Similarity=0.086 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHh
Q 037256 413 PDHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGR 462 (680)
Q Consensus 413 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 462 (680)
|....++.++..++.-.-.++++..+.++.+.|. .+...|-.-++.++|
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 4444555555555555555566666666555542 344555555555544
No 428
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=28.14 E-value=3.3e+02 Score=27.43 Aligned_cols=32 Identities=6% Similarity=0.008 Sum_probs=16.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCHH
Q 037256 385 VLIAGYGMHGHGRKALEFFSQMLE-----EGVKPDHI 416 (680)
Q Consensus 385 ~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~ 416 (680)
.+...+...|+..++.+++++... -|++|+..
T Consensus 120 ~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh 156 (380)
T KOG2908|consen 120 EIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVH 156 (380)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhh
Confidence 344445555666666665555554 34555443
No 429
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=27.77 E-value=2.2e+02 Score=23.24 Aligned_cols=19 Identities=32% Similarity=0.531 Sum_probs=8.3
Q ss_pred HHHHHHcCChhHHHHHHHH
Q 037256 284 LTGYIQNGQASEALLLFDE 302 (680)
Q Consensus 284 i~~~~~~g~~~~A~~~~~~ 302 (680)
+..|...++.++|...+.+
T Consensus 9 l~ey~~~~d~~ea~~~l~e 27 (113)
T PF02847_consen 9 LMEYFSSGDVDEAVECLKE 27 (113)
T ss_dssp HHHHHHHT-HHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHH
Confidence 3344444444444444444
No 430
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=27.51 E-value=8.7e+02 Score=26.81 Aligned_cols=176 Identities=11% Similarity=0.042 Sum_probs=82.7
Q ss_pred hHHHHHHHhcCCCC-ChhHHHHHHHH-----HHhCCCccHHHHHHHHHHH-------cCCCCCHhHHHHHHHHHhcc---
Q 037256 161 TDDGCKVFDEMSVR-DLVSWTVMITA-----YEQAEKPEEALILFQKTQQ-------EGLLSDSVTIVSVASAVGQL--- 224 (680)
Q Consensus 161 ~~~A~~~f~~~~~~-~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~-------~g~~p~~~t~~~ll~~~~~~--- 224 (680)
...|.+.++..... ++..-..+... +....+.+.|+..|+.... .| +......+...|.+.
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 45566666665543 33332222222 3455677788888877765 34 222344444444442
Q ss_pred -C-ChHHHHHHHHHHHHccCCCChhHHHHHHHHHHh-cCCHHHHHHHHHhcCCC-ChhHHHHHHHHHH----HcCChhHH
Q 037256 225 -G-DVLKAQAVHGYAICNAFLEDLCIQNSIVAMYAR-CGNVEKARLVFDMMEKR-DLISWNSMLTGYI----QNGQASEA 296 (680)
Q Consensus 225 -~-~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~-~g~~~~A~~~f~~m~~~-~~~~~~~li~~~~----~~g~~~~A 296 (680)
. +.+.|..++....+.|.+ +....-..+..... ..+...|.+.|....+. .+.+.-.+...|. ...+...|
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred ccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHH
Confidence 2 556677777777666632 22222222222211 23456677777665542 2222222222221 22345666
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcC
Q 037256 297 LLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSN 342 (680)
Q Consensus 297 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~ 342 (680)
..++.+.-+.| .|-..--...+..+.. +..+.+...+..+...|
T Consensus 384 ~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 384 FAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred HHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 66666666665 3332222222223333 44555444444444444
No 431
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=27.30 E-value=5e+02 Score=23.95 Aligned_cols=58 Identities=12% Similarity=0.256 Sum_probs=43.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhhcCC--------------CcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256 419 TSILSACSHAGLIDEGRKCFADMTKLSV--------------KPEVKHYACMVDMLGRAGCLYEAFDMIKQM 476 (680)
Q Consensus 419 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~--------------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 476 (680)
.+++..|-+.-++.+++.+++.|.+..+ .+.-..-|.-...+.+.|.+|.|+.++++-
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLres 207 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRES 207 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhcc
Confidence 4566678888889999999888876433 223345566678889999999999999876
No 432
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=27.07 E-value=4.9e+02 Score=28.23 Aligned_cols=57 Identities=14% Similarity=0.226 Sum_probs=37.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCC--ChhH---HHHHHHHHHHcCChhHHHHHHHHHHhC
Q 037256 250 NSIVAMYARCGNVEKARLVFDMMEKR--DLIS---WNSMLTGYIQNGQASEALLLFDEMQNS 306 (680)
Q Consensus 250 ~~Li~~y~~~g~~~~A~~~f~~m~~~--~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~ 306 (680)
..|+.-|.+.+++++|..++..|.=. .... .+.+.+.+.+..--++....++.+...
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 46788899999999999999998732 2233 334445555555555555666666544
No 433
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=27.06 E-value=1e+03 Score=27.41 Aligned_cols=125 Identities=10% Similarity=0.057 Sum_probs=66.9
Q ss_pred CCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCC--CChhHHHHHHHHHHhcCCHHHHHHHHHhc-------CCCC
Q 037256 206 GLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFL--EDLCIQNSIVAMYARCGNVEKARLVFDMM-------EKRD 276 (680)
Q Consensus 206 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~Li~~y~~~g~~~~A~~~f~~m-------~~~~ 276 (680)
++..+......++..+ .||...+..+++.+...... .+... =..+.+.+.+... ....
T Consensus 192 ~v~I~deaL~~La~~s--~GD~R~lln~Le~a~~~~~~~~~~~i~-----------It~~~~~e~l~~~~~~ydk~gd~h 258 (725)
T PRK13341 192 KVDLEPEAEKHLVDVA--NGDARSLLNALELAVESTPPDEDGLID-----------ITLAIAEESIQQRAVLYDKEGDAH 258 (725)
T ss_pred ccCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccCCCCcee-----------ccHHHHHHHHHHhhhhcccCCCCC
Confidence 4555666666666543 78888888888876542111 00000 0122233333221 1112
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcc-----hHHHHHHHHHHHHcCCC
Q 037256 277 LISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGS-----RQLGRKFHGYIINSNMK 344 (680)
Q Consensus 277 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~-----~~~a~~i~~~~~~~~~~ 344 (680)
....++++.. ++.++++.|+..+.+|.+.|..|....-..++.+.-..|. ...+...+......|++
T Consensus 259 yd~Isa~~ks-irgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdigladp~al~~~~~~~~a~~~~g~p 330 (725)
T PRK13341 259 FDTISAFIKS-LRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVGLADPQALVVVEACAAAFERVGLP 330 (725)
T ss_pred HHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhCCc
Confidence 2222333333 4568999999999999999988876665555555544442 33334444444555544
No 434
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=26.73 E-value=3.9e+02 Score=28.96 Aligned_cols=56 Identities=11% Similarity=0.207 Sum_probs=34.7
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCC--Ch---hHHHHHHHHHHhCCCccHHHHHHHHHHH
Q 037256 149 AALVDMYAKCGQTDDGCKVFDEMSVR--DL---VSWTVMITAYEQAEKPEEALILFQKTQQ 204 (680)
Q Consensus 149 ~~Li~~~~~~g~~~~A~~~f~~~~~~--~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~ 204 (680)
..|+.-|.+.+++++|..++..|.=. .. .+.+.+...+.+..--.+....++.+..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 45778899999999999999888522 11 2344445555555444444444554443
No 435
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=26.59 E-value=2.8e+02 Score=24.88 Aligned_cols=49 Identities=8% Similarity=-0.016 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccC
Q 037256 177 VSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLG 225 (680)
Q Consensus 177 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 225 (680)
..-..++..+...++.-.|.++++.+.+.+...+..|.-..|..+...|
T Consensus 26 ~qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 26 PQRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 3334455555555556667777777777666566665544444444433
No 436
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=26.51 E-value=3.5e+02 Score=28.27 Aligned_cols=105 Identities=8% Similarity=0.086 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHH-----hhhcCCCcChHHHH-------HHHHHHHhcCCHHHHHHHHHhCCCCCC
Q 037256 414 DHITFTSILSACSHAGLIDEGRKCFAD-----MTKLSVKPEVKHYA-------CMVDMLGRAGCLYEAFDMIKQMPLPPN 481 (680)
Q Consensus 414 ~~~t~~~ll~a~~~~g~~~~a~~~~~~-----m~~~~~~p~~~~~~-------~li~~~~~~g~~~~A~~~~~~m~~~p~ 481 (680)
+......++.+.....++.+-.+..+. ....++......+. .|++..+-.|++..|+++++.+.+...
T Consensus 74 ~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~ 153 (404)
T PF10255_consen 74 NVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKK 153 (404)
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccc
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 037256 482 DSVWGALLLACRIHGEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDM 537 (680)
Q Consensus 482 ~~~~~~ll~a~~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 537 (680)
. .|.....+.. .+|..++-+|.-.+++.+|.++|...
T Consensus 154 ~-l~~~V~~~~i------------------s~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 154 G-LYTKVPACHI------------------STYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred h-hhccCcchhe------------------ehHHHHHHHHHHHHHHHHHHHHHHHH
No 437
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=26.50 E-value=5.8e+02 Score=24.43 Aligned_cols=48 Identities=19% Similarity=0.279 Sum_probs=34.2
Q ss_pred HHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 037256 366 AENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHI 416 (680)
Q Consensus 366 A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 416 (680)
++.+|.-. ..|.+.....|+..+. .+++++|.+++.++-+.|+.|...
T Consensus 227 ~enVfKv~--d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Di 274 (333)
T KOG0991|consen 227 QENVFKVC--DEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDI 274 (333)
T ss_pred hhhhhhcc--CCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHH
Confidence 34555555 5677777777777654 577888999998888888887654
No 438
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=26.45 E-value=6.6e+02 Score=25.06 Aligned_cols=26 Identities=12% Similarity=0.377 Sum_probs=14.5
Q ss_pred HHHHHHHHHhc-C-CCChhHHHHHHHHH
Q 037256 262 VEKARLVFDMM-E-KRDLISWNSMLTGY 287 (680)
Q Consensus 262 ~~~A~~~f~~m-~-~~~~~~~~~li~~~ 287 (680)
++.+.++...+ . +.+...|..++..+
T Consensus 56 ~~~~l~l~~~~~~~E~~~~vw~~~~~~l 83 (324)
T PF11838_consen 56 YSDFLDLLEYLLPNETDYVVWSTALSNL 83 (324)
T ss_dssp HHHHHHHHGGG-GT--SHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCchHHHHHHHHHH
Confidence 55666666666 3 45666666665543
No 439
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=26.43 E-value=6.3e+02 Score=24.88 Aligned_cols=134 Identities=16% Similarity=0.133 Sum_probs=73.1
Q ss_pred HHHHHHhCCCccHHHHHHHHHHHcCCCCCHhH-------HHHHHHHHhccCChHHHHHHHH----HHHHccCCCChhHHH
Q 037256 182 MITAYEQAEKPEEALILFQKTQQEGLLSDSVT-------IVSVASAVGQLGDVLKAQAVHG----YAICNAFLEDLCIQN 250 (680)
Q Consensus 182 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-------~~~ll~~~~~~~~~~~a~~~~~----~~~~~g~~~~~~~~~ 250 (680)
+.+...+.+++++|+..|.+....|+..|..+ ...+...+...|+...-.+... .|....-+....+..
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 34455667788888888888888877666544 4455566666666544333222 122222222334445
Q ss_pred HHHHHHHhc-CCHHHHHHHHHhcCC---C-C-----hhHHHHHHHHHHHcCChhHHHHHHHHH----HhCCCCCCHhhH
Q 037256 251 SIVAMYARC-GNVEKARLVFDMMEK---R-D-----LISWNSMLTGYIQNGQASEALLLFDEM----QNSDCKPNPVTA 315 (680)
Q Consensus 251 ~Li~~y~~~-g~~~~A~~~f~~m~~---~-~-----~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~t~ 315 (680)
+|+..+... ..++.-.++.....+ + + ...-.-+|..+.+.|.+.+|+.+...+ .+-.-+|+..+.
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~v 167 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITV 167 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeeh
Confidence 555554332 234444444433321 0 0 111234788889999999998876554 344445655554
No 440
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=26.40 E-value=8.4e+02 Score=26.32 Aligned_cols=59 Identities=7% Similarity=0.136 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 037256 246 LCIQNSIVAMYARCGNVEKARLVFDMMEK--RDLISWNSMLTGYIQNGQASEALLLFDEMQN 305 (680)
Q Consensus 246 ~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 305 (680)
....-++++.++..-++.-.+.+..+|.. .+-..+..++..|..+ ..++-..+++++.+
T Consensus 66 d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve 126 (711)
T COG1747 66 DSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVE 126 (711)
T ss_pred chHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHH
Confidence 33334444444444444444444444432 2334444555555554 33444444444444
No 441
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=26.34 E-value=2.9e+02 Score=24.79 Aligned_cols=45 Identities=11% Similarity=0.095 Sum_probs=21.7
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhcc
Q 037256 79 NTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASN 123 (680)
Q Consensus 79 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 123 (680)
..++..+...+..-.|.++++.+.+.+..++..|--..|..+...
T Consensus 29 ~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~ 73 (169)
T PRK11639 29 LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQ 73 (169)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHC
Confidence 344444444444555555555555555444444443344443333
No 442
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=26.33 E-value=76 Score=24.19 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=17.7
Q ss_pred cHHHHHHHHHHHHHHHHcCcccCCcc
Q 037256 570 WKEVYKKVESMAVEIKMAGYMPDLSC 595 (680)
Q Consensus 570 ~~~i~~~~~~l~~~m~~~g~~p~~~~ 595 (680)
..++...+++..++++..|+.||...
T Consensus 7 li~il~~ie~~inELk~dG~ePDivL 32 (85)
T PF08967_consen 7 LIRILELIEEKINELKEDGFEPDIVL 32 (85)
T ss_dssp HHHHHHHHHHHHHHHHHTT----EEE
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 45677778889999999999999854
No 443
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=26.26 E-value=3.4e+02 Score=23.65 Aligned_cols=45 Identities=13% Similarity=0.099 Sum_probs=24.1
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhc
Q 037256 282 SMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLG 326 (680)
Q Consensus 282 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 326 (680)
.++..+.+.++.-.|.++++++.+.+...+..|....|..+...|
T Consensus 25 ~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 25 AVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 344555555555666666666666555555555544444444433
No 444
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=25.88 E-value=1.2e+03 Score=27.76 Aligned_cols=255 Identities=9% Similarity=0.006 Sum_probs=146.9
Q ss_pred HHHHhcCCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCC
Q 037256 165 CKVFDEMSVRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLE 244 (680)
Q Consensus 165 ~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 244 (680)
..+...+..+|...-...+..+.+.+. .+++..+..+... +|...=...+.++...+........+..+++ .+
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~---~~ 696 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTP-PGFGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLG---SP 696 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcc-hhHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhc---CC
Confidence 355555667788887777888877775 4455655555542 3433333444444433221111222333333 25
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhh
Q 037256 245 DLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTY 324 (680)
Q Consensus 245 ~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 324 (680)
|..+..+.+..+...+.- ....+...+..+|...-...+.++.+.+..+. +..... .++...-.....++..
T Consensus 697 d~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~ 768 (897)
T PRK13800 697 DPVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLAT 768 (897)
T ss_pred CHHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHH
Confidence 667767777777655421 12345566677787766677777776655432 222222 4555555566666666
Q ss_pred hcchHH-HHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHH-HHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHH
Q 037256 325 LGSRQL-GRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAEN-MFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEF 402 (680)
Q Consensus 325 ~g~~~~-a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~-~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 402 (680)
.+..+. +...+..+.+ .+|..+-.+.+..+.+.|..+.+.. +...+ ..++...-...+.++...+. .++...
T Consensus 769 ~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL--~d~d~~VR~~Aa~aL~~l~~-~~a~~~ 842 (897)
T PRK13800 769 LGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAAL--RASAWQVRQGAARALAGAAA-DVAVPA 842 (897)
T ss_pred hccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHh--cCCChHHHHHHHHHHHhccc-cchHHH
Confidence 665433 2333333332 4678888899999999998765533 33444 34565555556677777665 456666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhh
Q 037256 403 FSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTK 443 (680)
Q Consensus 403 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 443 (680)
+-.+.+ .|+...=...+.++.+......+...+..+.+
T Consensus 843 L~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 843 LVEALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 666664 56666555666677665434566777766665
No 445
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=25.60 E-value=6.9e+02 Score=24.99 Aligned_cols=78 Identities=12% Similarity=0.163 Sum_probs=48.2
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChH--HHHHHHHHH---HhcCCHHHHHHHHH
Q 037256 400 LEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVK--HYACMVDML---GRAGCLYEAFDMIK 474 (680)
Q Consensus 400 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~li~~~---~~~g~~~~A~~~~~ 474 (680)
.++++.|.+.++.|....|.-+.-.+++.=.+.+.+.+++.+....-.-+.. ...+|+-.. .-.|++..-.++++
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~rfd~Ll~iCcsmlil~Re~il~~DF~~nmkLLQ 342 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQRFDFLLYICCSMLILVRERILEGDFTVNMKLLQ 342 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHh
Confidence 4677888888888888887777767777777888888888887652222211 112222111 11466666666666
Q ss_pred hCC
Q 037256 475 QMP 477 (680)
Q Consensus 475 ~m~ 477 (680)
.-|
T Consensus 343 ~yp 345 (370)
T KOG4567|consen 343 NYP 345 (370)
T ss_pred cCC
Confidence 553
No 446
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=25.18 E-value=2.3e+02 Score=22.02 Aligned_cols=59 Identities=8% Similarity=0.298 Sum_probs=35.9
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHhCCCcc
Q 037256 131 VVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEKPE 193 (680)
Q Consensus 131 ~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~ 193 (680)
.++..+++.|+-. ....-..-+..-+.+.|.++++.++.++..+|..+..++-..|...
T Consensus 20 ~v~~~L~~~~Vlt----~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~ 78 (84)
T cd08326 20 YLWDHLLSRGVFT----PDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTD 78 (84)
T ss_pred HHHHHHHhcCCCC----HHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchH
Confidence 4555566555322 1112222234456777888888888888888888887777766544
No 447
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=25.15 E-value=4.5e+02 Score=22.72 Aligned_cols=65 Identities=9% Similarity=0.013 Sum_probs=39.0
Q ss_pred CCCHHHHHHHHHHHHccC---CHHHHHHHHHHhhhcC-CCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256 412 KPDHITFTSILSACSHAG---LIDEGRKCFADMTKLS-VKPEVKHYACMVDMLGRAGCLYEAFDMIKQM 476 (680)
Q Consensus 412 ~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 476 (680)
.|...+-..+..+..++. ++.+++.+++.+.+.. -.-.....-.|.-++.|.++++++.++++.+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~l 97 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDAL 97 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHH
Confidence 445555555555665554 4667888888887632 1122222233555677888888888777654
No 448
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=24.92 E-value=1.1e+03 Score=27.28 Aligned_cols=186 Identities=16% Similarity=0.120 Sum_probs=96.7
Q ss_pred hccCChHHHHHHHHHHHHhCCCCchh-------HHHHHHHHH-HhcCChHHHHHHHhcC----C----CCChhHHHHHHH
Q 037256 121 ASNSLILEGKVVHGDIIRTGFLSDSY-------VQAALVDMY-AKCGQTDDGCKVFDEM----S----VRDLVSWTVMIT 184 (680)
Q Consensus 121 ~~~~~~~~a~~~~~~~~~~g~~~~~~-------~~~~Li~~~-~~~g~~~~A~~~f~~~----~----~~~~~~~~~li~ 184 (680)
....++.+|..+.+++...-..|+.. .+++|-... ...|+++.|.++-+.. + ...++.+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 35677888888888776543233222 233332222 2357777777665433 2 236677888888
Q ss_pred HHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHH-----HHHhccCChHHH--HHHHHHHHHccC------CCChhHHHH
Q 037256 185 AYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVA-----SAVGQLGDVLKA--QAVHGYAICNAF------LEDLCIQNS 251 (680)
Q Consensus 185 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-----~~~~~~~~~~~a--~~~~~~~~~~g~------~~~~~~~~~ 251 (680)
+..-.|++++|..+..+..+..-.-+...|.... ..+-..|....+ ...+........ .+-..+...
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 8888899999988887766543333433332222 223444532222 222322222110 122344555
Q ss_pred HHHHHHhcC-CHHHHHHHHHhcCC--CC-hhH---HHHHHHHHHHcCChhHHHHHHHHHHhC
Q 037256 252 IVAMYARCG-NVEKARLVFDMMEK--RD-LIS---WNSMLTGYIQNGQASEALLLFDEMQNS 306 (680)
Q Consensus 252 Li~~y~~~g-~~~~A~~~f~~m~~--~~-~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~ 306 (680)
+..+|.+.. ...++..-++--.. +. ..+ +..|+..+...|+.++|...+.++...
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l 647 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL 647 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 555555511 11122222221111 11 111 235677778889999998888887754
No 449
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=24.64 E-value=8.1e+02 Score=25.48 Aligned_cols=51 Identities=8% Similarity=0.046 Sum_probs=29.1
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHH--ccCCHHHHHHHHHHhhh
Q 037256 392 MHGHGRKALEFFSQMLEEGVKPDHI--TFTSILSACS--HAGLIDEGRKCFADMTK 443 (680)
Q Consensus 392 ~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~--~~g~~~~a~~~~~~m~~ 443 (680)
..+++..|.++|+++.+. ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 143 n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred hcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 566777777777777765 455444 2333334443 23455666666666554
No 450
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=24.39 E-value=7.2e+02 Score=24.84 Aligned_cols=41 Identities=10% Similarity=0.228 Sum_probs=18.9
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHH
Q 037256 97 LYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDII 137 (680)
Q Consensus 97 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 137 (680)
+|+.|.+.++.|.-+.|.-+.-.+.+.=.+.....+++.+.
T Consensus 265 L~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 265 LWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred HHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 44444444455544444444444444444444444444443
No 451
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=24.13 E-value=8.9e+02 Score=25.80 Aligned_cols=79 Identities=11% Similarity=0.108 Sum_probs=47.3
Q ss_pred cCCHHHHHHHHHhC-CCCCCHhH----HHHHHHHHHHH------------HHHHHHHHHccCCCCCchHHHHHHHHHhcC
Q 037256 463 AGCLYEAFDMIKQM-PLPPNDSV----WGALLLACRIH------------GEIAANYLFQLEPEHTGYFVLMSNIYAASN 525 (680)
Q Consensus 463 ~g~~~~A~~~~~~m-~~~p~~~~----~~~ll~a~~~~------------~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g 525 (680)
.|++++|+.++-.+ .++||..- |..++..+... -...+++++-.+..|....---+---....
T Consensus 711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 (831)
T PRK15180 711 EGRLDEALSVLISLKRIEPDVSRLMREYKQIIRLFNESRKDGGSTITSYEHLDYAKKLLVFDSENAYALKYAALNAMHLR 790 (831)
T ss_pred cccHHHHHHHHHhhhccCccHHHHHHHHHHHHHHhhhhcccCCcccchhhhHhhhhhheeeccchHHHHHHHHhhHhHHH
Confidence 58899999888777 57888653 33344333222 123455666666665422111111123567
Q ss_pred ChhHHHHHHHHHHhCC
Q 037256 526 KWREVGKLREDMKNKG 541 (680)
Q Consensus 526 ~~~~A~~~~~~m~~~g 541 (680)
++.+|.++++.+.+-+
T Consensus 791 ~~~~~~~~~~~~~~~~ 806 (831)
T PRK15180 791 DYTQALQYWQRLEKVN 806 (831)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 8999999999998643
No 452
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=23.71 E-value=8.2e+02 Score=25.22 Aligned_cols=52 Identities=10% Similarity=0.076 Sum_probs=25.5
Q ss_pred HHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHH-HcCCHHHHHHHHhh
Q 037256 321 ACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYA-KCGDLDTAENMFND 372 (680)
Q Consensus 321 a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~-k~g~~~~A~~~f~~ 372 (680)
.+.+.|-+..|.++-+.+...+...|+......|+.|+ ++++++--.++.+.
T Consensus 112 ~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~ 164 (360)
T PF04910_consen 112 SLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSES 164 (360)
T ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHh
Confidence 34445555555555555555544444444445555543 44444444444443
No 453
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=23.28 E-value=7.1e+02 Score=24.37 Aligned_cols=205 Identities=11% Similarity=-0.054 Sum_probs=0.0
Q ss_pred ccCChHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcCChHHHHHHHhcCCCC-ChhHHHHHHHHHHh----CCCccHH
Q 037256 122 SNSLILEGKVVHGDIIRTGFL-SDSYVQAALVDMYAKCGQTDDGCKVFDEMSVR-DLVSWTVMITAYEQ----AEKPEEA 195 (680)
Q Consensus 122 ~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~----~g~~~~A 195 (680)
..+++..+...+......+.. .................+...|.+.|....+. +......|...|.. ..+..+|
T Consensus 53 ~~~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A 132 (292)
T COG0790 53 YPPDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKA 132 (292)
T ss_pred ccccHHHHHHHHHHhhhcCChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHH
Q ss_pred HHHHHHHHHcCCCCC---HhHHHHHHHH----HhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHh----cCCHHH
Q 037256 196 LILFQKTQQEGLLSD---SVTIVSVASA----VGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYAR----CGNVEK 264 (680)
Q Consensus 196 ~~~~~~m~~~g~~p~---~~t~~~ll~~----~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~----~g~~~~ 264 (680)
...|++..+.|..+. ...+..+-.. ....-+...|...+..+-..+ +......|..+|.. ..+.++
T Consensus 133 ~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~ 209 (292)
T COG0790 133 LKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKK 209 (292)
T ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHH
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHcC---------------ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchH
Q 037256 265 ARLVFDMMEKRDLISWNSMLTGYIQNG---------------QASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQ 329 (680)
Q Consensus 265 A~~~f~~m~~~~~~~~~~li~~~~~~g---------------~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 329 (680)
|...|....+.+...-...+..+...| +...|...+......+..........+-......+...
T Consensus 210 A~~wy~~Aa~~g~~~a~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (292)
T COG0790 210 AFRWYKKAAEQGDGAACYNLGLMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACEALRALKIGLSARGSGR 289 (292)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHhhCcCCCc
No 454
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=23.16 E-value=3.5e+02 Score=28.22 Aligned_cols=59 Identities=17% Similarity=0.112 Sum_probs=38.2
Q ss_pred HHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-------------------CCCCCHhHHHHHHHHHHHH
Q 037256 437 CFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM-------------------PLPPNDSVWGALLLACRIH 495 (680)
Q Consensus 437 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------------------~~~p~~~~~~~ll~a~~~~ 495 (680)
.+....+.|.-.|...+...++.+...-.++||.+--.+. --.||..+|.++..+|+.-
T Consensus 173 ~l~r~l~~G~l~D~~~l~~~lr~~lgd~TFeEAy~rTgriLnItv~~~~~~~~p~LLNylTaPnVlIwsAv~aS~a~p 250 (391)
T cd07229 173 RIQRLLREGYFLDVKVLEEFVRANLGDLTFEEAYARTGRVLNITVAPSAVSGSPNLLNYLTAPNVLIWSAALASNASS 250 (391)
T ss_pred HHHHHHcCCCcccHHHHHHHHHHHcCCCcHHHHHHhhCCEEEEEEECCCCCCCCeeeecCCCCCchHHHHHHHHcCCc
Confidence 3444445566667777666666666666677776433222 1368999999999888754
No 455
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=23.08 E-value=2.7e+02 Score=25.41 Aligned_cols=19 Identities=16% Similarity=0.212 Sum_probs=9.3
Q ss_pred HHHhCCCchHHHHHHHHHH
Q 037256 84 AYANNGHCVETLELYSTMR 102 (680)
Q Consensus 84 ~~~~~g~~~~A~~~~~~m~ 102 (680)
.|.++|.+++|.+++++..
T Consensus 120 VCm~~g~Fk~A~eiLkr~~ 138 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLF 138 (200)
T ss_pred HHHhcCchHHHHHHHHHHh
Confidence 3444555555555554444
No 456
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=23.07 E-value=2e+02 Score=23.45 Aligned_cols=21 Identities=19% Similarity=0.371 Sum_probs=9.6
Q ss_pred HHHHHHhcCChHHHHHHHHHH
Q 037256 386 LIAGYGMHGHGRKALEFFSQM 406 (680)
Q Consensus 386 li~~~~~~g~~~~A~~l~~~m 406 (680)
++..|...|+.++|...+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 344444455555555555443
No 457
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=23.05 E-value=6.4e+02 Score=28.05 Aligned_cols=24 Identities=25% Similarity=0.171 Sum_probs=13.8
Q ss_pred HHHHHHhccCChHHHHHHHHHHHH
Q 037256 216 SVASAVGQLGDVLKAQAVHGYAIC 239 (680)
Q Consensus 216 ~ll~~~~~~~~~~~a~~~~~~~~~ 239 (680)
+++.+|...|++..+.+++.....
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~ 56 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFID 56 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc
Confidence 555666666666666655555443
No 458
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=23.02 E-value=4.6e+02 Score=27.38 Aligned_cols=106 Identities=16% Similarity=0.188 Sum_probs=62.3
Q ss_pred HHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHH-------HHHHHHHHHccCC
Q 037256 436 KCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIH-------GEIAANYLFQLEP 508 (680)
Q Consensus 436 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~-------~~~~~~~~~~l~p 508 (680)
++|..+.+..+.||...+.-+..+|.+.=-+|-|-++++-.-..-+...+.+.++..+.. .-.-...++-..|
T Consensus 460 ~L~~Hl~kl~l~PDiylidwiftlyskslpldlacRIwDvy~rdgeeFlfr~~lgIlklyepkLl~mDf~~~~qfLtklp 539 (586)
T KOG2223|consen 460 KLFTHLKKLELTPDIYLIDWIFTLYSKSLPLDLACRIWDVYCRDGEEFLFRTALGILKLYEPKLLVMDFIHVAQFLTKLP 539 (586)
T ss_pred HHHHHHHhccCCCchhhHHHHHHHHhccCChHHhhhhhheeeecchHHHHHHHHHHHHHccchHhhhhHHHHHHHHHhCc
Confidence 345555566788888888888888888877887777776654445666777777666554 1111223344455
Q ss_pred CCCch-----HHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 037256 509 EHTGY-----FVLMSNIYAASNKWREVGKLREDMKNKG 541 (680)
Q Consensus 509 ~~~~~-----~~~l~~~~~~~g~~~~A~~~~~~m~~~g 541 (680)
.+... ......+..+..+|.+...-.++=...|
T Consensus 540 ~dL~~eelF~~i~~~~~~sr~kkwsqvf~~i~kd~~eg 577 (586)
T KOG2223|consen 540 EDLTPEELFMHIAYIQMQSRSKKWSQVFQEIDKDVNEG 577 (586)
T ss_pred ccCCHHHHHHHHHHHhhhhhchhHHHHHHHHHhhcccc
Confidence 55432 2222233466677776655544433333
No 459
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=22.90 E-value=5.5e+02 Score=25.49 Aligned_cols=112 Identities=11% Similarity=0.141 Sum_probs=57.1
Q ss_pred HHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 037256 353 VMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLID 432 (680)
Q Consensus 353 li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 432 (680)
++..+.+.+++.+..+.+..+ ..+..-...+..+...|++..|+++..+..+. .. ...-|.++=.. ..+++
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i----~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~-l~-~l~~~~c~~~L---~~~L~ 174 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQI----KTVQQTQSRLQELLEEGDYPGALDLIEECQQL-LE-ELKGYSCVRHL---SSQLQ 174 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HH-hcccchHHHHH---hHHHH
Confidence 445555555555555555544 12233344556666788888888888777652 10 00011111000 01222
Q ss_pred HHHHHHHHhhhc-----CCCcChHHHHHHHHHHHhcCCHHHHHHHH
Q 037256 433 EGRKCFADMTKL-----SVKPEVKHYACMVDMLGRAGCLYEAFDMI 473 (680)
Q Consensus 433 ~a~~~~~~m~~~-----~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 473 (680)
+-....+.+.+. -..-|+..|..+.++|.-.|+.+.+.+-+
T Consensus 175 e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl 220 (291)
T PF10475_consen 175 ETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKL 220 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 222222222221 11567778888888888888776665444
No 460
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=22.67 E-value=1.1e+02 Score=19.23 Aligned_cols=23 Identities=13% Similarity=0.212 Sum_probs=18.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHH
Q 037256 513 YFVLMSNIYAASNKWREVGKLRE 535 (680)
Q Consensus 513 ~~~~l~~~~~~~g~~~~A~~~~~ 535 (680)
....++-.+...|++++|+.++.
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Confidence 45667888899999999999944
No 461
>PRK10941 hypothetical protein; Provisional
Probab=22.60 E-value=7e+02 Score=24.48 Aligned_cols=74 Identities=9% Similarity=0.089 Sum_probs=47.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHH----HhCCCCCCHhHHHHHHHHH
Q 037256 418 FTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMI----KQMPLPPNDSVWGALLLAC 492 (680)
Q Consensus 418 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~p~~~~~~~ll~a~ 492 (680)
.+.+-.+|.+.++++.|+++.+.+.... +.++.-+.--.-.|.+.|.+..|..=+ +..|-.|+.......+...
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 3445567888899999999888888753 333444555556688888888775433 4445566655555444443
No 462
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=22.30 E-value=4.6e+02 Score=24.65 Aligned_cols=30 Identities=7% Similarity=0.123 Sum_probs=26.4
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 037256 512 GYFVLMSNIYAASNKWREVGKLREDMKNKG 541 (680)
Q Consensus 512 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 541 (680)
....+++.++.+.|+.++|.+.+.++...+
T Consensus 166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 166 TLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 567789999999999999999999998654
No 463
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=22.19 E-value=1e+03 Score=25.69 Aligned_cols=64 Identities=13% Similarity=0.087 Sum_probs=37.2
Q ss_pred hhhhHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCCCC-CcchHHHHHHH-HHhCCCchHHHHHHHHHHhC
Q 037256 34 TSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKS-YSFLWNTMIRA-YANNGHCVETLELYSTMRRS 104 (680)
Q Consensus 34 ~~~~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~~p-~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~ 104 (680)
|+-+|...+...-+ - +.+.+...+|..|...+| ++..|-.-..- |-.+-+.+.|..+|.+-++.
T Consensus 104 D~~lW~~yi~f~kk-~------~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~ 169 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKK-K------KTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRF 169 (568)
T ss_pred CHHHHHHHHHHHHH-h------cchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhc
Confidence 66666666665555 4 556677777777776666 44455333322 22333466677776665553
No 464
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=22.09 E-value=3e+02 Score=26.49 Aligned_cols=54 Identities=9% Similarity=0.010 Sum_probs=35.1
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhc----C-CCcChHHHHHHHHHHHhcCCHHHHHHHH
Q 037256 420 SILSACSHAGLIDEGRKCFADMTKL----S-VKPEVKHYACMVDMLGRAGCLYEAFDMI 473 (680)
Q Consensus 420 ~ll~a~~~~g~~~~a~~~~~~m~~~----~-~~p~~~~~~~li~~~~~~g~~~~A~~~~ 473 (680)
.+..-|.+.|++++|.++|+.+... | ..+...+...+..++.+.|+.++.+.+.
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4556688889999999998887543 1 1233344555666667777777665543
No 465
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=22.06 E-value=2.1e+02 Score=21.45 Aligned_cols=62 Identities=16% Similarity=0.256 Sum_probs=38.2
Q ss_pred CHHHHHHHHhhcCCC-CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 037256 362 DLDTAENMFNDIHPS-ERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFAD 440 (680)
Q Consensus 362 ~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~ 440 (680)
+.+.|..++..+... .+.+..||++...+.+++-. -+.+.||..+..- +..|.+-|.+
T Consensus 12 DtEmA~~mL~DLr~dekRsPQLYnAI~k~L~RHkF~-----------iskl~pd~~~LG~----------L~~aL~ey~~ 70 (82)
T PF11123_consen 12 DTEMAQQMLADLRDDEKRSPQLYNAIGKLLDRHKFQ-----------ISKLQPDENILGE----------LAAALEEYKK 70 (82)
T ss_pred HHHHHHHHHHHhcchhhcChHHHHHHHHHHHHccch-----------hhhcCccHHHHHH----------HHHHHHHHHH
Confidence 456777777777544 56788888888776665421 1236777766533 3445555666
Q ss_pred hhhc
Q 037256 441 MTKL 444 (680)
Q Consensus 441 m~~~ 444 (680)
|...
T Consensus 71 ~~g~ 74 (82)
T PF11123_consen 71 MVGA 74 (82)
T ss_pred HcCC
Confidence 5543
No 466
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=21.93 E-value=3.6e+02 Score=21.18 Aligned_cols=51 Identities=14% Similarity=0.161 Sum_probs=0.0
Q ss_pred HHccCCHHHHHHHHHHhhhc---CCCcC-----hHHHHHHHHHHHhcCCHHHHHHHHHh
Q 037256 425 CSHAGLIDEGRKCFADMTKL---SVKPE-----VKHYACMVDMLGRAGCLYEAFDMIKQ 475 (680)
Q Consensus 425 ~~~~g~~~~a~~~~~~m~~~---~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~ 475 (680)
..+.|++.+|.+.+.+.... ...+. ....-.+.......|++++|.+.+++
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~e 66 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEE 66 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
No 467
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=21.81 E-value=46 Score=34.62 Aligned_cols=146 Identities=9% Similarity=0.122 Sum_probs=0.0
Q ss_pred CCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhH-----
Q 037256 104 SGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVRDLVS----- 178 (680)
Q Consensus 104 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~~~~~~----- 178 (680)
.|+.||.++|.+=..+--+......|+..++.++ ...-...-|.-=..-...|.-..-+++|+.+.-.|...
T Consensus 409 a~v~~d~~~yGsG~g~sKK~Ak~~AAR~tLeiLI---Pd~~~~~~n~~d~k~~~~~k~q~~le~F~~I~Iedprv~e~ct 485 (650)
T KOG4334|consen 409 AGVLPDLFPYGSGVGASKKTAKLVAARDTLEILI---PDLRVSEDNVCDGKVEEDGKQQGFLELFKKIKIEDPRVVEMCT 485 (650)
T ss_pred ccccccccccccccccchHHHHHHHHHHHHHHhc---chhhhcccccccccccccccchhHHHHhhcccccCchHHHHhh
Q ss_pred -------HHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhcc------CChHHHHHHHHHHHHccCCCC
Q 037256 179 -------WTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQL------GDVLKAQAVHGYAICNAFLED 245 (680)
Q Consensus 179 -------~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~------~~~~~a~~~~~~~~~~g~~~~ 245 (680)
|+.|..++.++-.+. +.-.+..+.++..-.+-++-+|.+. .+..++.++-.+.+-.-+-|.
T Consensus 486 k~~~psPy~iL~~cl~Rn~g~~------d~~ik~E~i~~~nqkse~im~~Gkht~~~~cknkr~gkQlASQ~ilq~lHPh 559 (650)
T KOG4334|consen 486 KCAIPSPYNILRDCLSRNLGWN------DLVIKKEMIGNGNQKSEVIMILGKHTEEAECKNKRQGKQLASQRILQKLHPH 559 (650)
T ss_pred hcCCCCHHHHHHHHHHhhcCCc------ceeeeeeccCCCCccceeEeeeccceeeeeeechhHHHHHHHHHHHHHhCHH
Q ss_pred hhHHHHHHHHHHh
Q 037256 246 LCIQNSIVAMYAR 258 (680)
Q Consensus 246 ~~~~~~Li~~y~~ 258 (680)
..+|.+|+.+|.+
T Consensus 560 ~~twGSlLriYGr 572 (650)
T KOG4334|consen 560 LLTWGSLLRIYGR 572 (650)
T ss_pred hhhHHHHHHHhhh
No 468
>PF05476 PET122: PET122; InterPro: IPR008732 The nuclear PET122 gene of Saccharomyces cerevisiae encodes a mitochondrial-localised protein that activates initiation of translation of the mitochondrial mRNA from the COX3 gene, which encodes subunit III of cytochrome c oxidase [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005740 mitochondrial envelope
Probab=21.73 E-value=5.9e+02 Score=24.59 Aligned_cols=79 Identities=6% Similarity=-0.104 Sum_probs=53.4
Q ss_pred CChHHHHHHhhhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHhCCC--CCCcccHHHHHHHHhccCChHHHHHHH
Q 037256 56 GEPNTARSLFNSIHNDKSYSFLWNTMIRAYANNGHCVETLELYSTMRRSGI--SSNSYTFPFVLKACASNSLILEGKVVH 133 (680)
Q Consensus 56 g~~~~A~~~f~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~~~~~~a~~~~ 133 (680)
|++++|++.++.+|...-|..-+...+.--++-|.++...-+|.+...... ...+....-+.+.+...|+.--..+++
T Consensus 24 r~Fd~vL~~~R~~p~~emd~~fLq~yL~~S~qwgHv~Si~yIW~k~Vmr~~~L~V~P~lLCDi~nlal~~~k~fip~ql~ 103 (267)
T PF05476_consen 24 REFDDVLAELRQIPVDEMDYSFLQLYLARSCQWGHVPSIDYIWYKYVMRRKVLLVEPRLLCDIGNLALHEGKYFIPSQLY 103 (267)
T ss_pred hhHHHHHHHHHcCcHhHhhHHHHHHHHHHHHHHhcchHHHHHHHHHHhhccccccChhHHHHHHHHHHhcCCCcCHHHHH
Confidence 999999999999987755766677777777888999988888888754431 223334445555555555544444443
Q ss_pred H
Q 037256 134 G 134 (680)
Q Consensus 134 ~ 134 (680)
.
T Consensus 104 ~ 104 (267)
T PF05476_consen 104 M 104 (267)
T ss_pred H
Confidence 3
No 469
>PF07443 HARP: HepA-related protein (HARP); InterPro: IPR010003 This entry represents a conserved region approximately 60 residues long within eukaryotic HepA-related protein (HARP). This exhibits single-stranded DNA-dependent ATPase activity, and is ubiquitously expressed in human and mouse tissues []. Family members may contain more than one copy of this region.; GO: 0004386 helicase activity, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0016568 chromatin modification, 0005634 nucleus
Probab=21.67 E-value=58 Score=22.89 Aligned_cols=31 Identities=16% Similarity=0.368 Sum_probs=22.9
Q ss_pred CChHHHHHHhhhccCC--CCCcchHHHHHHHHH
Q 037256 56 GEPNTARSLFNSIHND--KSYSFLWNTMIRAYA 86 (680)
Q Consensus 56 g~~~~A~~~f~~~~~~--~p~~~~~~~li~~~~ 86 (680)
|=-++.+.+|++||.+ +|.+..||-.+.-|.
T Consensus 6 gy~~~lI~vFK~~pSr~YD~~Tr~W~F~L~Dy~ 38 (55)
T PF07443_consen 6 GYHEELIAVFKQMPSRNYDPKTRKWNFSLEDYS 38 (55)
T ss_pred cCCHHHHHHHHcCcccccCccceeeeeeHHHHH
Confidence 5557788999999988 566777876666553
No 470
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=21.05 E-value=6.2e+02 Score=23.17 Aligned_cols=22 Identities=9% Similarity=0.362 Sum_probs=14.9
Q ss_pred HHHHHccCCHHHHHHHHHHhhh
Q 037256 422 LSACSHAGLIDEGRKCFADMTK 443 (680)
Q Consensus 422 l~a~~~~g~~~~a~~~~~~m~~ 443 (680)
+..|.+.|.+++|.+++++...
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc
Confidence 3457777777777777777665
No 471
>PHA03100 ankyrin repeat protein; Provisional
Probab=20.78 E-value=1e+03 Score=25.32 Aligned_cols=16 Identities=38% Similarity=0.248 Sum_probs=9.5
Q ss_pred hhHHHHHHHHHHhCCC
Q 037256 527 WREVGKLREDMKNKGL 542 (680)
Q Consensus 527 ~~~A~~~~~~m~~~g~ 542 (680)
.++-.+-.+.|+...+
T Consensus 364 ~~~C~~ei~~mk~~~i 379 (480)
T PHA03100 364 INECEKEIERMKEIKL 379 (480)
T ss_pred HHHHHHHHHHHHhcEE
Confidence 3444566677776555
No 472
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=20.77 E-value=6.2e+02 Score=26.40 Aligned_cols=61 Identities=16% Similarity=0.103 Sum_probs=32.9
Q ss_pred hhHHHHHHHHhhhcchHHHHHHHHHHHH--cCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhc
Q 037256 313 VTALILVSACTYLGSRQLGRKFHGYIIN--SNMKIDATLRNAVMDMYAKCGDLDTAENMFNDI 373 (680)
Q Consensus 313 ~t~~~ll~a~~~~g~~~~a~~i~~~~~~--~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~ 373 (680)
++...|++...-.|+.+...++.+.+.+ .|..|...+---+.-+|.-.|++.+|.++|-.+
T Consensus 236 fsL~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~ni 298 (525)
T KOG3677|consen 236 FSLLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNI 298 (525)
T ss_pred HHHHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666665555555555443 122332222233455666667777777777655
No 473
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.48 E-value=1.1e+03 Score=27.54 Aligned_cols=159 Identities=16% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHHHHHHHHccCCCChhHH----HHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 037256 230 AQAVHGYAICNAFLEDLCIQ----NSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQN 305 (680)
Q Consensus 230 a~~~~~~~~~~g~~~~~~~~----~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 305 (680)
+..+...+.+.|.+.-.-.| ..-......+|+++.|.+.-..+.++|. |..|...-.++|+.+-|...|++...
T Consensus 623 GqaiIaYLqKkgypeiAL~FVkD~~tRF~LaLe~gnle~ale~akkldd~d~--w~rLge~Al~qgn~~IaEm~yQ~~kn 700 (1202)
T KOG0292|consen 623 GQAIIAYLQKKGYPEIALHFVKDERTRFELALECGNLEVALEAAKKLDDKDV--WERLGEEALRQGNHQIAEMCYQRTKN 700 (1202)
T ss_pred cHHHHHHHHhcCCcceeeeeecCcchheeeehhcCCHHHHHHHHHhcCcHHH--HHHHHHHHHHhcchHHHHHHHHHhhh
Q ss_pred CCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHH
Q 037256 306 SDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNV 385 (680)
Q Consensus 306 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~ 385 (680)
|..|--.|.-.|+.++-.++...+..++ .......|+|. .|++++=.++++.. ...+..-.++
T Consensus 701 ---------fekLsfLYliTgn~eKL~Km~~iae~r~-D~~~~~qnalY-----l~dv~ervkIl~n~--g~~~laylta 763 (1202)
T KOG0292|consen 701 ---------FEKLSFLYLITGNLEKLSKMMKIAEIRN-DATGQFQNALY-----LGDVKERVKILENG--GQLPLAYLTA 763 (1202)
T ss_pred ---------hhheeEEEEEeCCHHHHHHHHHHHHhhh-hhHHHHHHHHH-----hccHHHHHHHHHhc--CcccHHHHHH
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCC
Q 037256 386 LIAGYGMHGHGRKALEFFSQMLEEGVK 412 (680)
Q Consensus 386 li~~~~~~g~~~~A~~l~~~m~~~g~~ 412 (680)
.. +|.-++|.++.++...++..
T Consensus 764 ~~-----~G~~~~ae~l~ee~~~~~~~ 785 (1202)
T KOG0292|consen 764 AA-----HGLEDQAEKLGEELEKQVPS 785 (1202)
T ss_pred hh-----cCcHHHHHHHHHhhccccCC
No 474
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=20.18 E-value=39 Score=24.69 Aligned_cols=21 Identities=19% Similarity=0.392 Sum_probs=16.4
Q ss_pred ceEEEecCCccccccCccccC
Q 037256 656 RKIIVRDANRFHHFEGGTCSC 676 (680)
Q Consensus 656 ~~~~~~~~~~~h~~~~g~csc 676 (680)
..|-+.|.+..|+|+||+-+-
T Consensus 8 ksi~LkDGstvyiFKDGKMam 28 (73)
T PF11525_consen 8 KSIPLKDGSTVYIFKDGKMAM 28 (73)
T ss_dssp EEEEBTTSEEEEEETTS-EEE
T ss_pred eeEecCCCCEEEEEcCCceeh
Confidence 356788999999999998653
Done!