Query 037256
Match_columns 680
No_of_seqs 791 out of 4663
Neff 10.3
Searched_HMMs 29240
Date Mon Mar 25 17:37:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037256.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037256hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 3E-42 1E-46 383.8 38.4 508 14-540 28-579 (597)
2 2xpi_A Anaphase-promoting comp 100.0 8.9E-39 3E-43 355.7 29.8 476 34-523 83-596 (597)
3 4g26_A Pentatricopeptide repea 100.0 7.9E-28 2.7E-32 257.3 21.8 186 278-463 27-223 (501)
4 1w3b_A UDP-N-acetylglucosamine 100.0 5.7E-25 1.9E-29 230.4 41.2 374 82-525 6-387 (388)
5 4g26_A Pentatricopeptide repea 99.9 7.1E-27 2.4E-31 249.9 22.3 202 294-495 7-223 (501)
6 1w3b_A UDP-N-acetylglucosamine 99.9 2.4E-24 8.2E-29 225.6 40.5 362 56-425 13-383 (388)
7 2gw1_A Mitochondrial precursor 99.9 4.6E-22 1.6E-26 216.2 31.0 250 259-540 202-478 (514)
8 2gw1_A Mitochondrial precursor 99.9 3.2E-21 1.1E-25 209.5 31.0 430 40-483 11-483 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 3.2E-20 1.1E-24 198.1 37.9 313 143-481 24-361 (450)
10 2y4t_A DNAJ homolog subfamily 99.9 9.3E-21 3.2E-25 202.3 32.8 382 57-469 7-444 (450)
11 3fp2_A TPR repeat-containing p 99.9 7.2E-21 2.5E-25 208.1 30.3 424 75-541 25-492 (537)
12 3fp2_A TPR repeat-containing p 99.9 9.6E-20 3.3E-24 199.2 31.0 428 36-481 26-494 (537)
13 3ieg_A DNAJ homolog subfamily 99.8 4.4E-17 1.5E-21 167.6 34.0 298 177-481 4-338 (359)
14 3ieg_A DNAJ homolog subfamily 99.8 1.4E-16 4.9E-21 163.8 35.5 296 211-540 3-335 (359)
15 1b89_A Protein (clathrin heavy 99.8 9.6E-18 3.3E-22 170.9 21.7 284 157-476 15-308 (449)
16 3hym_B Cell division cycle pro 99.8 2.1E-16 7.2E-21 160.6 32.0 266 175-476 21-296 (330)
17 1b89_A Protein (clathrin heavy 99.8 1.7E-17 5.8E-22 169.1 23.3 281 56-370 17-305 (449)
18 4g1t_A Interferon-induced prot 99.8 3.5E-16 1.2E-20 168.0 31.2 283 261-551 153-470 (472)
19 3hym_B Cell division cycle pro 99.7 1.3E-15 4.5E-20 154.7 31.1 285 141-466 18-321 (330)
20 2xm6_A Protein corresponding t 99.7 1.5E-14 5.1E-19 156.0 41.0 350 74-445 38-433 (490)
21 1xi4_A Clathrin heavy chain; a 99.7 2.4E-13 8.2E-18 153.9 51.2 447 34-541 984-1459(1630)
22 2ooe_A Cleavage stimulation fa 99.7 1.5E-14 5E-19 157.7 39.3 409 71-539 8-491 (530)
23 2ooe_A Cleavage stimulation fa 99.7 7.3E-15 2.5E-19 160.1 36.8 401 34-476 12-489 (530)
24 1fch_A Peroxisomal targeting s 99.7 3.2E-16 1.1E-20 162.1 24.8 281 157-476 37-356 (368)
25 1xi4_A Clathrin heavy chain; a 99.7 1.3E-13 4.6E-18 155.9 47.2 374 112-532 987-1376(1630)
26 2xm6_A Protein corresponding t 99.7 9E-14 3.1E-18 149.9 42.8 358 94-476 26-429 (490)
27 1fch_A Peroxisomal targeting s 99.7 5.5E-16 1.9E-20 160.4 24.2 278 88-404 38-354 (368)
28 3spa_A Mtrpol, DNA-directed RN 99.7 2.5E-17 8.5E-22 180.6 9.2 130 343-472 123-258 (1134)
29 4eqf_A PEX5-related protein; a 99.7 3.9E-15 1.3E-19 153.9 25.0 262 175-476 64-353 (365)
30 4eqf_A PEX5-related protein; a 99.7 1.4E-15 4.7E-20 157.3 21.1 271 144-440 64-352 (365)
31 3mkr_A Coatomer subunit epsilo 99.7 3.4E-14 1.2E-18 141.5 28.7 248 255-540 8-264 (291)
32 3cv0_A Peroxisome targeting si 99.7 2.3E-14 7.8E-19 145.2 26.2 264 175-476 20-312 (327)
33 4g1t_A Interferon-induced prot 99.6 1E-13 3.6E-18 148.6 31.7 372 74-476 50-456 (472)
34 3mkr_A Coatomer subunit epsilo 99.6 8.2E-14 2.8E-18 138.7 28.5 250 156-417 10-270 (291)
35 3spa_A Mtrpol, DNA-directed RN 99.6 5.8E-16 2E-20 169.9 12.8 146 380-525 127-286 (1134)
36 3cv0_A Peroxisome targeting si 99.6 6.7E-14 2.3E-18 141.8 25.8 274 74-373 20-312 (327)
37 3uq3_A Heat shock protein STI1 99.6 3.1E-13 1.1E-17 131.7 21.5 224 278-540 6-236 (258)
38 2pl2_A Hypothetical conserved 99.5 2.2E-13 7.4E-18 129.5 16.8 195 276-537 4-211 (217)
39 3uq3_A Heat shock protein STI1 99.5 8.1E-13 2.8E-17 128.7 20.9 226 178-444 7-236 (258)
40 3u4t_A TPR repeat-containing p 99.5 2.9E-12 9.9E-17 126.1 23.6 223 250-476 7-247 (272)
41 3e4b_A ALGK; tetratricopeptide 99.5 5E-12 1.7E-16 134.3 26.7 343 116-542 9-389 (452)
42 2pl2_A Hypothetical conserved 99.5 2.2E-12 7.7E-17 122.4 20.7 206 243-476 2-211 (217)
43 3e4b_A ALGK; tetratricopeptide 99.5 3.1E-12 1E-16 135.9 23.5 186 248-446 178-389 (452)
44 1xnf_A Lipoprotein NLPI; TPR, 99.5 1E-12 3.5E-17 129.4 17.5 195 278-476 44-241 (275)
45 2ho1_A Type 4 fimbrial biogene 99.4 2E-11 6.9E-16 118.5 25.0 203 277-483 37-243 (252)
46 1xnf_A Lipoprotein NLPI; TPR, 99.4 4.8E-12 1.6E-16 124.6 20.0 241 189-438 18-269 (275)
47 2vq2_A PILW, putative fimbrial 99.4 4E-11 1.4E-15 113.8 23.7 204 277-484 8-217 (225)
48 2q7f_A YRRB protein; TPR, prot 99.4 7.1E-12 2.4E-16 120.8 17.1 195 278-476 24-219 (243)
49 1ouv_A Conserved hypothetical 99.4 1.4E-10 4.9E-15 114.1 26.9 223 175-445 5-252 (273)
50 3u4t_A TPR repeat-containing p 99.4 5.2E-11 1.8E-15 117.0 23.6 181 56-240 17-208 (272)
51 2ho1_A Type 4 fimbrial biogene 99.4 7.1E-11 2.4E-15 114.6 23.9 205 176-420 37-247 (252)
52 1ouv_A Conserved hypothetical 99.4 1.7E-10 5.9E-15 113.5 26.8 219 245-476 5-248 (273)
53 2vq2_A PILW, putative fimbrial 99.4 8.9E-11 3E-15 111.4 22.2 210 176-421 8-221 (225)
54 2h6f_A Protein farnesyltransfe 99.4 8.2E-11 2.8E-15 121.2 23.1 225 176-441 97-344 (382)
55 4a1s_A PINS, partner of inscut 99.4 1.9E-11 6.3E-16 128.3 18.6 266 178-476 50-369 (411)
56 3sf4_A G-protein-signaling mod 99.3 1.9E-11 6.5E-16 127.7 17.6 264 178-442 11-334 (406)
57 2h6f_A Protein farnesyltransfe 99.3 1.3E-10 4.5E-15 119.6 23.5 239 249-493 100-364 (382)
58 3ro2_A PINS homolog, G-protein 99.3 4E-11 1.4E-15 121.4 19.0 270 178-476 7-329 (338)
59 4abn_A Tetratricopeptide repea 99.3 2.3E-11 7.7E-16 130.1 17.8 213 293-537 84-318 (474)
60 2q7f_A YRRB protein; TPR, prot 99.3 3.6E-11 1.2E-15 115.8 17.5 196 246-444 23-222 (243)
61 3sf4_A G-protein-signaling mod 99.3 7E-11 2.4E-15 123.4 20.8 268 209-476 7-333 (406)
62 3vtx_A MAMA; tetratricopeptide 99.3 1.2E-10 4E-15 107.1 19.1 165 346-540 4-170 (184)
63 4a1s_A PINS, partner of inscut 99.3 2.7E-11 9.3E-16 127.0 16.2 268 146-444 49-372 (411)
64 2ond_A Cleavage stimulation fa 99.3 4.7E-10 1.6E-14 112.6 23.6 246 263-518 33-304 (308)
65 3ulq_A Response regulator aspa 99.3 7.6E-11 2.6E-15 122.5 18.4 229 283-539 109-367 (383)
66 3ro2_A PINS homolog, G-protein 99.3 4.8E-11 1.6E-15 120.7 16.0 271 147-444 7-332 (338)
67 4e6h_A MRNA 3'-END-processing 99.3 1E-08 3.4E-13 112.8 35.0 419 34-462 65-586 (679)
68 4e6h_A MRNA 3'-END-processing 99.3 1.1E-08 3.8E-13 112.5 35.0 426 57-511 47-575 (679)
69 3nf1_A KLC 1, kinesin light ch 99.2 5.5E-11 1.9E-15 119.1 14.1 231 276-539 26-306 (311)
70 3vtx_A MAMA; tetratricopeptide 99.2 4.4E-10 1.5E-14 103.2 18.6 162 245-408 4-169 (184)
71 3ulq_A Response regulator aspa 99.2 4E-10 1.4E-14 117.0 19.8 228 182-443 109-367 (383)
72 2ond_A Cleavage stimulation fa 99.2 2.7E-09 9.2E-14 107.1 24.8 163 279-444 101-270 (308)
73 4gyw_A UDP-N-acetylglucosamine 99.2 2.1E-10 7.3E-15 127.6 16.8 166 344-539 6-173 (723)
74 4abn_A Tetratricopeptide repea 99.2 4.1E-10 1.4E-14 120.3 17.3 201 245-476 101-318 (474)
75 3nf1_A KLC 1, kinesin light ch 99.2 3.4E-10 1.2E-14 113.3 15.5 231 245-476 26-304 (311)
76 3as5_A MAMA; tetratricopeptide 99.2 3.4E-09 1.1E-13 96.8 20.8 165 347-540 8-173 (186)
77 1hz4_A MALT regulatory protein 99.1 4.3E-08 1.5E-12 101.1 29.9 260 184-443 22-321 (373)
78 3q15_A PSP28, response regulat 99.1 8.8E-09 3E-13 106.6 21.6 160 315-476 185-362 (378)
79 4i17_A Hypothetical protein; T 99.1 1.5E-08 5.2E-13 96.4 21.0 97 276-373 6-102 (228)
80 1hz4_A MALT regulatory protein 99.1 3.6E-08 1.2E-12 101.7 25.3 259 218-476 21-319 (373)
81 3as5_A MAMA; tetratricopeptide 99.0 9.5E-09 3.3E-13 93.7 18.4 160 248-443 10-172 (186)
82 4i17_A Hypothetical protein; T 99.0 2.9E-08 1E-12 94.4 22.5 188 347-539 7-208 (228)
83 3edt_B KLC 2, kinesin light ch 99.0 1.3E-09 4.3E-14 107.3 13.3 192 348-539 44-280 (283)
84 3q15_A PSP28, response regulat 99.0 2.7E-08 9.2E-13 102.9 23.5 126 315-443 225-364 (378)
85 4gyw_A UDP-N-acetylglucosamine 99.0 7.4E-09 2.5E-13 115.2 17.2 161 279-443 11-173 (723)
86 3edt_B KLC 2, kinesin light ch 98.9 7.2E-09 2.5E-13 101.8 14.1 214 262-476 24-278 (283)
87 1qqe_A Vesicular transport pro 98.9 5.6E-08 1.9E-12 96.5 17.9 34 160-204 32-65 (292)
88 1qqe_A Vesicular transport pro 98.9 6.2E-08 2.1E-12 96.2 17.7 165 314-480 79-271 (292)
89 3mv2_B Coatomer subunit epsilo 98.9 5.2E-07 1.8E-11 88.1 23.4 246 256-540 23-282 (310)
90 4ga2_A E3 SUMO-protein ligase 98.9 7.3E-09 2.5E-13 91.5 9.5 145 353-526 3-149 (150)
91 3mv2_B Coatomer subunit epsilo 98.8 2.5E-07 8.6E-12 90.4 20.1 176 296-476 85-279 (310)
92 3qky_A Outer membrane assembly 98.8 1.7E-07 5.9E-12 91.2 18.5 190 346-586 14-247 (261)
93 2fo7_A Synthetic consensus TPR 98.8 1.6E-07 5.4E-12 80.2 15.6 129 382-539 3-131 (136)
94 2uy1_A Cleavage stimulation fa 98.8 1.7E-06 5.8E-11 92.2 26.8 194 265-475 198-409 (493)
95 2fo7_A Synthetic consensus TPR 98.8 1.5E-07 5.1E-12 80.4 14.9 128 279-408 3-131 (136)
96 2uy1_A Cleavage stimulation fa 98.7 2.9E-05 9.8E-10 82.7 34.7 350 37-407 17-411 (493)
97 3qky_A Outer membrane assembly 98.7 3.1E-07 1.1E-11 89.3 17.2 181 245-444 14-224 (261)
98 2yhc_A BAMD, UPF0169 lipoprote 98.7 4E-07 1.4E-11 86.3 16.2 46 497-542 167-215 (225)
99 3urz_A Uncharacterized protein 98.7 4.7E-07 1.6E-11 84.7 16.3 73 283-357 60-132 (208)
100 2pzi_A Probable serine/threoni 98.7 5E-07 1.7E-11 100.9 18.8 187 323-514 402-610 (681)
101 2r5s_A Uncharacterized protein 98.7 6E-07 2E-11 81.4 15.9 156 249-407 9-171 (176)
102 3qou_A Protein YBBN; thioredox 98.7 5.5E-07 1.9E-11 89.0 16.8 159 314-475 119-280 (287)
103 3urz_A Uncharacterized protein 98.6 5.5E-07 1.9E-11 84.2 15.6 185 279-487 6-195 (208)
104 2pzi_A Probable serine/threoni 98.6 3E-07 1E-11 102.7 15.8 183 288-477 402-603 (681)
105 3rjv_A Putative SEL1 repeat pr 98.6 3E-06 1E-10 79.3 19.4 163 275-446 16-199 (212)
106 2vsy_A XCC0866; transferase, g 98.6 4.2E-07 1.4E-11 99.5 14.8 163 325-518 2-169 (568)
107 2ifu_A Gamma-SNAP; membrane fu 98.6 3.2E-07 1.1E-11 91.7 12.7 93 349-442 118-222 (307)
108 2r5s_A Uncharacterized protein 98.6 6.4E-07 2.2E-11 81.2 13.0 152 321-475 15-169 (176)
109 2yhc_A BAMD, UPF0169 lipoprote 98.5 6.4E-06 2.2E-10 77.9 18.9 193 247-476 5-210 (225)
110 3rjv_A Putative SEL1 repeat pr 98.5 2.9E-06 1E-10 79.5 16.1 163 245-411 17-199 (212)
111 2ifu_A Gamma-SNAP; membrane fu 98.5 1.1E-06 3.7E-11 87.8 13.8 216 190-436 5-253 (307)
112 3qou_A Protein YBBN; thioredox 98.5 6.5E-06 2.2E-10 81.2 19.2 159 212-407 118-282 (287)
113 3u3w_A Transcriptional activat 98.5 1.1E-05 3.9E-10 79.7 20.8 164 353-539 81-265 (293)
114 4ga2_A E3 SUMO-protein ligase 98.5 5.7E-07 1.9E-11 79.1 9.6 134 56-191 11-149 (150)
115 2c2l_A CHIP, carboxy terminus 98.5 4.7E-07 1.6E-11 89.1 9.7 187 348-540 5-199 (281)
116 1hh8_A P67PHOX, NCF-2, neutrop 98.4 6.5E-06 2.2E-10 76.8 17.2 144 250-415 10-154 (213)
117 3dra_A Protein farnesyltransfe 98.4 0.00014 4.7E-09 71.7 27.2 212 192-408 49-286 (306)
118 4f3v_A ESX-1 secretion system 98.4 6.1E-06 2.1E-10 79.5 17.0 140 347-487 102-246 (282)
119 4gco_A Protein STI-1; structur 98.4 2.4E-06 8.2E-11 72.5 12.4 92 381-475 14-106 (126)
120 1hh8_A P67PHOX, NCF-2, neutrop 98.4 8.7E-06 3E-10 76.0 17.6 123 350-476 9-147 (213)
121 3gyz_A Chaperone protein IPGC; 98.4 1.6E-06 5.6E-11 76.0 11.6 102 411-540 31-133 (151)
122 3dra_A Protein farnesyltransfe 98.4 3E-05 1E-09 76.4 21.7 217 292-539 48-286 (306)
123 2vsy_A XCC0866; transferase, g 98.4 1.5E-06 5E-11 95.1 13.7 149 56-206 3-158 (568)
124 4f3v_A ESX-1 secretion system 98.4 1.5E-06 5.2E-11 83.7 11.0 203 55-273 19-235 (282)
125 2vgx_A Chaperone SYCD; alterna 98.4 1.7E-06 5.8E-11 75.8 10.3 102 411-540 16-118 (148)
126 3u3w_A Transcriptional activat 98.3 2.2E-05 7.7E-10 77.5 19.2 61 279-339 198-264 (293)
127 1na0_A Designed protein CTPR3; 98.3 9E-06 3.1E-10 68.0 13.7 95 380-476 9-103 (125)
128 1p5q_A FKBP52, FK506-binding p 98.3 3.7E-06 1.3E-10 85.0 13.1 129 380-538 147-292 (336)
129 1a17_A Serine/threonine protei 98.3 1.3E-05 4.3E-10 71.2 15.1 128 381-538 14-144 (166)
130 2qfc_A PLCR protein; TPR, HTH, 98.3 1.8E-05 6.3E-10 78.2 17.1 167 279-475 77-262 (293)
131 3gyz_A Chaperone protein IPGC; 98.3 1.9E-06 6.5E-11 75.6 8.7 100 380-482 36-137 (151)
132 2qfc_A PLCR protein; TPR, HTH, 98.3 5.7E-05 2E-09 74.6 20.4 170 349-539 77-265 (293)
133 2lni_A Stress-induced-phosphop 98.3 1E-05 3.5E-10 68.7 12.9 93 380-475 16-109 (133)
134 2vyi_A SGTA protein; chaperone 98.2 1.6E-05 5.3E-10 67.1 13.4 92 381-475 13-105 (131)
135 2xcb_A PCRH, regulatory protei 98.2 1.6E-05 5.4E-10 68.9 13.4 95 417-539 20-114 (142)
136 2fbn_A 70 kDa peptidylprolyl i 98.2 1.4E-06 4.7E-11 80.7 6.3 156 355-540 12-186 (198)
137 3gw4_A Uncharacterized protein 98.2 1.2E-05 4.1E-10 74.2 12.7 48 258-305 4-54 (203)
138 1na0_A Designed protein CTPR3; 98.2 3.2E-05 1.1E-09 64.4 13.7 114 347-462 9-123 (125)
139 2lni_A Stress-induced-phosphop 98.2 3.9E-05 1.3E-09 65.0 14.4 118 344-464 13-132 (133)
140 2c2l_A CHIP, carboxy terminus 98.2 1.5E-05 5E-10 78.4 13.0 88 217-305 10-100 (281)
141 1a17_A Serine/threonine protei 98.2 2.4E-05 8.3E-10 69.3 13.5 126 348-476 14-143 (166)
142 4gco_A Protein STI-1; structur 98.2 2E-05 6.9E-10 66.7 12.1 106 348-456 14-121 (126)
143 3gw4_A Uncharacterized protein 98.2 9.6E-06 3.3E-10 74.9 11.0 147 158-304 5-174 (203)
144 3q7a_A Farnesyltransferase alp 98.2 0.0012 4.2E-08 65.7 26.6 174 184-362 62-257 (349)
145 2vgx_A Chaperone SYCD; alterna 98.2 1.3E-05 4.3E-10 70.2 10.9 94 380-476 21-115 (148)
146 3q7a_A Farnesyltransferase alp 98.1 0.0016 5.4E-08 64.9 26.5 224 78-305 57-330 (349)
147 2vyi_A SGTA protein; chaperone 98.1 4.1E-05 1.4E-09 64.4 12.8 118 346-466 11-130 (131)
148 1p5q_A FKBP52, FK506-binding p 98.1 1.5E-05 5.3E-10 80.4 11.5 128 346-476 146-291 (336)
149 2e2e_A Formate-dependent nitri 98.1 1.8E-05 6.1E-10 71.5 10.5 117 290-408 23-143 (177)
150 3dss_A Geranylgeranyl transfer 98.0 0.001 3.5E-08 65.9 23.3 188 328-519 90-317 (331)
151 2dba_A Smooth muscle cell asso 98.0 0.0001 3.6E-09 63.7 14.2 95 379-476 27-125 (148)
152 2e2e_A Formate-dependent nitri 98.0 2.1E-05 7.3E-10 70.9 9.5 114 360-476 23-141 (177)
153 2kck_A TPR repeat; tetratricop 98.0 4.7E-05 1.6E-09 62.1 10.7 97 417-541 8-107 (112)
154 3upv_A Heat shock protein STI1 98.0 0.00011 3.8E-09 61.8 13.0 92 382-476 6-98 (126)
155 2xcb_A PCRH, regulatory protei 98.0 8.2E-05 2.8E-09 64.3 12.3 105 369-476 6-112 (142)
156 1elw_A TPR1-domain of HOP; HOP 98.0 0.00023 7.8E-09 58.4 14.5 93 381-476 5-98 (118)
157 4gcn_A Protein STI-1; structur 97.9 6.8E-05 2.3E-09 63.4 11.3 91 383-475 11-108 (127)
158 1wao_1 Serine/threonine protei 97.9 0.0001 3.5E-09 78.2 15.1 121 386-536 12-135 (477)
159 4gcn_A Protein STI-1; structur 97.9 5.9E-05 2E-09 63.8 10.5 103 348-454 9-120 (127)
160 3sz7_A HSC70 cochaperone (SGT) 97.9 7.9E-05 2.7E-09 66.2 11.8 93 381-476 12-105 (164)
161 3q49_B STIP1 homology and U bo 97.9 9.5E-05 3.3E-09 63.1 11.9 97 415-539 9-105 (137)
162 1hxi_A PEX5, peroxisome target 97.9 4.8E-05 1.6E-09 63.8 9.6 93 419-539 21-113 (121)
163 1kt0_A FKBP51, 51 kDa FK506-bi 97.9 8.5E-05 2.9E-09 78.5 13.5 129 380-538 268-413 (457)
164 2dba_A Smooth muscle cell asso 97.9 0.0003 1E-08 60.6 15.0 111 345-458 26-141 (148)
165 3sz7_A HSC70 cochaperone (SGT) 97.9 0.00023 7.7E-09 63.1 14.1 97 346-444 10-108 (164)
166 1elw_A TPR1-domain of HOP; HOP 97.9 0.00025 8.4E-09 58.2 13.4 96 347-444 4-101 (118)
167 2fbn_A 70 kDa peptidylprolyl i 97.9 2.3E-05 8E-10 72.2 7.3 171 252-444 10-186 (198)
168 3upv_A Heat shock protein STI1 97.9 0.00016 5.3E-09 60.9 11.9 89 353-443 10-100 (126)
169 4b4t_Q 26S proteasome regulato 97.8 0.0006 2.1E-08 71.2 19.0 121 356-476 104-242 (434)
170 3ro3_A PINS homolog, G-protein 97.8 6.1E-05 2.1E-09 66.1 9.4 129 348-476 10-155 (164)
171 1elr_A TPR2A-domain of HOP; HO 97.8 0.00033 1.1E-08 58.7 13.4 94 382-476 6-105 (131)
172 4b4t_Q 26S proteasome regulato 97.8 0.0078 2.7E-07 62.6 26.7 284 250-541 59-384 (434)
173 2kck_A TPR repeat; tetratricop 97.8 0.00012 4.1E-09 59.5 10.1 95 380-476 6-103 (112)
174 3q49_B STIP1 homology and U bo 97.8 0.00029 9.9E-09 60.0 12.3 95 347-443 9-105 (137)
175 2if4_A ATFKBP42; FKBP-like, al 97.8 7.3E-05 2.5E-09 75.5 9.7 95 417-539 232-327 (338)
176 1hxi_A PEX5, peroxisome target 97.8 0.00014 4.8E-09 60.8 9.8 91 383-476 20-111 (121)
177 3dss_A Geranylgeranyl transfer 97.7 0.0054 1.8E-07 60.7 22.6 165 276-444 107-304 (331)
178 3ro3_A PINS homolog, G-protein 97.7 0.00017 5.9E-09 63.1 10.8 138 381-539 10-157 (164)
179 1elr_A TPR2A-domain of HOP; HO 97.7 0.00013 4.4E-09 61.3 9.2 27 417-443 81-107 (131)
180 1wao_1 Serine/threonine protei 97.7 0.00025 8.6E-09 75.2 12.6 117 51-169 15-134 (477)
181 1ihg_A Cyclophilin 40; ppiase 97.6 0.00028 9.7E-09 72.0 12.1 122 383-532 226-362 (370)
182 2hr2_A Hypothetical protein; a 97.6 0.00042 1.4E-08 60.2 11.2 69 451-539 58-130 (159)
183 3rkv_A Putative peptidylprolyl 97.6 0.00042 1.4E-08 61.2 11.7 94 382-476 13-123 (162)
184 2xev_A YBGF; tetratricopeptide 97.6 0.00068 2.3E-08 56.9 12.3 89 354-444 9-105 (129)
185 1kt0_A FKBP51, 51 kDa FK506-bi 97.6 0.00021 7E-09 75.5 10.9 127 347-476 268-412 (457)
186 3k9i_A BH0479 protein; putativ 97.6 7E-05 2.4E-09 62.2 5.8 83 360-444 3-90 (117)
187 2xev_A YBGF; tetratricopeptide 97.6 0.00067 2.3E-08 56.9 11.6 91 383-476 5-102 (129)
188 1dce_A Protein (RAB geranylger 97.6 0.0028 9.6E-08 68.4 19.0 164 363-529 45-244 (567)
189 2hr2_A Hypothetical protein; a 97.5 0.00095 3.2E-08 57.9 12.1 104 350-453 14-145 (159)
190 2if4_A ATFKBP42; FKBP-like, al 97.4 0.00019 6.5E-09 72.4 6.8 143 314-476 181-325 (338)
191 1ihg_A Cyclophilin 40; ppiase 97.4 0.0007 2.4E-08 69.1 10.9 118 351-471 227-362 (370)
192 3k9i_A BH0479 protein; putativ 97.4 0.00018 6.2E-09 59.6 5.4 85 55-140 3-91 (117)
193 3n71_A Histone lysine methyltr 97.4 0.00064 2.2E-08 71.7 10.5 132 389-542 318-466 (490)
194 3rkv_A Putative peptidylprolyl 97.3 0.0016 5.4E-08 57.4 10.6 114 277-416 11-131 (162)
195 2l6j_A TPR repeat-containing p 97.2 0.00058 2E-08 55.4 6.4 94 379-476 3-104 (111)
196 2kat_A Uncharacterized protein 97.0 0.0017 5.9E-08 53.2 7.6 77 366-444 4-82 (115)
197 1zu2_A Mitochondrial import re 97.0 0.0011 3.8E-08 57.4 6.5 96 427-540 14-120 (158)
198 3n71_A Histone lysine methyltr 97.0 0.0029 9.9E-08 66.7 10.8 120 357-476 319-461 (490)
199 2l6j_A TPR repeat-containing p 97.0 0.00064 2.2E-08 55.2 4.7 95 75-172 4-105 (111)
200 1zu2_A Mitochondrial import re 97.0 0.0013 4.6E-08 56.9 6.7 96 327-425 17-134 (158)
201 3mkq_A Coatomer beta'-subunit; 96.9 0.033 1.1E-06 63.2 20.0 102 255-373 661-762 (814)
202 3ma5_A Tetratricopeptide repea 96.9 0.0029 9.8E-08 50.5 7.7 65 448-539 5-69 (100)
203 1klx_A Cysteine rich protein B 96.8 0.013 4.3E-07 50.0 11.7 89 353-445 31-127 (138)
204 1klx_A Cysteine rich protein B 96.8 0.026 8.7E-07 48.0 13.7 112 291-411 9-128 (138)
205 3ma5_A Tetratricopeptide repea 96.8 0.0037 1.3E-07 49.8 7.7 63 379-443 6-69 (100)
206 1na3_A Designed protein CTPR2; 96.7 0.017 5.9E-07 44.3 10.9 62 381-444 10-72 (91)
207 2kat_A Uncharacterized protein 96.7 0.0028 9.6E-08 51.9 6.5 79 60-139 3-82 (115)
208 1dce_A Protein (RAB geranylger 96.7 0.027 9.4E-07 60.7 15.9 131 56-188 43-190 (567)
209 3qwp_A SET and MYND domain-con 96.6 0.0085 2.9E-07 62.1 10.8 126 422-585 294-427 (429)
210 3mkq_A Coatomer beta'-subunit; 96.5 0.052 1.8E-06 61.5 17.8 100 358-476 663-762 (814)
211 3bee_A Putative YFRE protein; 96.5 0.012 4E-07 46.1 8.4 47 496-542 28-74 (93)
212 1na3_A Designed protein CTPR2; 96.4 0.03 1E-06 42.9 10.7 56 249-304 12-70 (91)
213 3lvg_A Clathrin heavy chain 1; 96.4 0.0016 5.4E-08 66.1 3.6 396 34-473 53-535 (624)
214 3ly7_A Transcriptional activat 96.0 0.31 1.1E-05 48.4 17.7 73 377-453 274-346 (372)
215 3qww_A SET and MYND domain-con 95.8 0.022 7.5E-07 58.9 8.8 93 427-539 310-410 (433)
216 3ly7_A Transcriptional activat 95.8 0.21 7.2E-06 49.6 15.1 66 416-483 278-344 (372)
217 3qww_A SET and MYND domain-con 95.4 0.059 2E-06 55.7 10.4 85 392-476 310-408 (433)
218 3qwp_A SET and MYND domain-con 95.3 0.11 3.6E-06 53.8 11.9 90 354-443 294-399 (429)
219 3mkq_B Coatomer subunit alpha; 95.2 1 3.5E-05 39.4 15.9 103 254-373 13-115 (177)
220 2kc7_A BFR218_protein; tetratr 95.2 0.11 3.8E-06 40.5 9.1 55 388-444 8-64 (99)
221 3u64_A Protein TP_0956; tetrat 95.1 0.28 9.7E-06 46.7 12.9 115 360-476 134-266 (301)
222 2kc7_A BFR218_protein; tetratr 94.6 0.07 2.4E-06 41.7 6.5 54 286-340 9-63 (99)
223 3mkq_B Coatomer subunit alpha; 94.6 0.38 1.3E-05 42.1 11.5 103 356-477 14-116 (177)
224 1pc2_A Mitochondria fission pr 94.0 0.46 1.6E-05 40.5 10.3 78 397-476 15-97 (152)
225 4ady_A RPN2, 26S proteasome re 93.9 10 0.00035 42.6 27.0 257 221-483 384-662 (963)
226 1pc2_A Mitochondria fission pr 93.3 0.29 1E-05 41.7 8.0 81 331-414 17-103 (152)
227 3bee_A Putative YFRE protein; 93.3 0.51 1.8E-05 36.5 8.9 65 345-409 4-72 (93)
228 3lvg_A Clathrin heavy chain 1; 93.2 0.0043 1.5E-07 62.9 -4.1 240 144-401 53-325 (624)
229 2v5f_A Prolyl 4-hydroxylase su 92.0 0.69 2.4E-05 36.6 8.4 69 346-416 4-80 (104)
230 1wy6_A Hypothetical protein ST 92.0 4.5 0.00015 33.3 15.2 85 359-447 73-157 (172)
231 3u64_A Protein TP_0956; tetrat 91.7 0.59 2E-05 44.5 8.6 82 364-447 180-272 (301)
232 4b4t_P 26S proteasome regulato 91.6 11 0.00038 38.7 19.2 186 349-542 179-388 (445)
233 1wy6_A Hypothetical protein ST 91.3 5.4 0.00019 32.9 15.1 135 391-543 18-157 (172)
234 2v5f_A Prolyl 4-hydroxylase su 90.5 1.5 5E-05 34.6 8.9 58 419-476 9-72 (104)
235 1nzn_A CGI-135 protein, fissio 89.0 2.9 0.0001 34.1 9.4 85 396-482 17-107 (126)
236 2wpv_A GET4, UPF0363 protein Y 88.9 17 0.0006 35.0 19.8 133 147-290 35-178 (312)
237 4fhn_B Nucleoporin NUP120; pro 88.7 22 0.00075 41.7 20.5 198 317-534 817-1043(1139)
238 2p58_C Putative type III secre 87.9 7.3 0.00025 30.0 10.1 86 226-316 22-107 (116)
239 1nzn_A CGI-135 protein, fissio 87.8 4.7 0.00016 32.9 9.9 85 328-415 17-107 (126)
240 2uwj_G Type III export protein 86.8 6.9 0.00023 30.1 9.3 86 226-316 21-106 (115)
241 4b4t_P 26S proteasome regulato 86.1 33 0.0011 35.2 20.2 94 383-476 140-244 (445)
242 4h7y_A Dual specificity protei 85.5 9.3 0.00032 32.2 10.5 37 274-311 10-52 (161)
243 3lpz_A GET4 (YOR164C homolog); 85.3 29 0.00098 33.8 22.0 133 148-291 38-181 (336)
244 3ffl_A Anaphase-promoting comp 85.2 7.5 0.00026 33.4 10.2 114 353-479 26-151 (167)
245 4gns_B Protein CSD3, chitin bi 85.1 7.2 0.00025 42.9 12.7 51 377-429 610-660 (754)
246 1y8m_A FIS1; mitochondria, unk 84.9 16 0.00054 30.5 11.9 45 496-540 61-106 (144)
247 4gns_B Protein CSD3, chitin bi 84.9 4 0.00014 44.9 10.6 50 390-441 347-397 (754)
248 3lpz_A GET4 (YOR164C homolog); 84.8 30 0.001 33.6 23.7 167 249-443 38-215 (336)
249 4fhn_B Nucleoporin NUP120; pro 84.6 21 0.00071 41.8 17.4 167 249-433 815-989 (1139)
250 4h7y_A Dual specificity protei 84.4 5.3 0.00018 33.7 8.6 98 377-476 10-120 (161)
251 2p58_C Putative type III secre 82.1 15 0.00052 28.3 9.4 86 327-419 22-107 (116)
252 2wpv_A GET4, UPF0363 protein Y 81.4 40 0.0014 32.5 23.6 166 249-442 36-215 (312)
253 2uwj_G Type III export protein 81.1 14 0.00049 28.4 9.0 86 327-419 21-106 (115)
254 2ff4_A Probable regulatory pro 80.7 7 0.00024 39.4 10.0 68 384-452 175-247 (388)
255 2qx5_A Nucleoporin NIC96; mRNA 80.1 62 0.0021 34.9 17.4 45 77-123 155-199 (661)
256 2ff4_A Probable regulatory pro 79.3 4.4 0.00015 41.0 7.9 68 350-417 174-247 (388)
257 3o48_A Mitochondria fission 1 78.1 27 0.00093 28.6 11.0 79 411-489 36-118 (134)
258 1qsa_A Protein (soluble lytic 77.2 82 0.0028 33.7 27.0 114 292-408 229-347 (618)
259 1v54_E Cytochrome C oxidase po 75.2 12 0.00039 29.1 7.1 62 395-458 25-87 (109)
260 1zbp_A Hypothetical protein VP 73.3 28 0.00096 32.5 10.7 111 424-540 6-129 (273)
261 1v54_E Cytochrome C oxidase po 72.5 15 0.00051 28.5 7.1 60 93-153 28-87 (109)
262 3ffl_A Anaphase-promoting comp 65.1 49 0.0017 28.3 9.7 119 251-382 25-157 (167)
263 1wdy_A 2-5A-dependent ribonucl 65.0 43 0.0015 31.1 11.0 17 355-371 224-240 (285)
264 4ady_A RPN2, 26S proteasome re 64.8 1.9E+02 0.0064 32.7 31.0 14 56-69 244-257 (963)
265 1y8m_A FIS1; mitochondria, unk 63.5 64 0.0022 26.8 12.2 70 412-481 36-109 (144)
266 2y69_E Cytochrome C oxidase su 63.5 25 0.00085 28.9 7.1 62 396-458 69-130 (152)
267 3o48_A Mitochondria fission 1 60.3 21 0.00072 29.3 6.3 53 327-379 58-110 (134)
268 3ltm_A Alpha-REP4; protein eng 57.8 99 0.0034 27.2 19.1 91 345-442 93-183 (211)
269 1k1a_A B-cell lymphoma 3-encod 55.4 84 0.0029 28.2 10.9 84 84-171 15-102 (241)
270 4b4t_R RPN7, 26S proteasome re 55.3 70 0.0024 32.5 11.0 94 383-476 134-234 (429)
271 1n11_A Ankyrin; clathrin, BAND 55.1 86 0.0029 31.6 11.9 15 460-474 351-365 (437)
272 2y69_E Cytochrome C oxidase su 54.9 88 0.003 25.7 8.9 63 430-492 68-132 (152)
273 3esl_A Checkpoint serine/threo 53.3 1.2E+02 0.0041 26.9 10.5 68 382-450 82-150 (202)
274 4b4t_R RPN7, 26S proteasome re 51.8 1E+02 0.0035 31.2 11.6 96 349-444 133-237 (429)
275 2zu6_B Programmed cell death p 50.3 1.3E+02 0.0043 28.9 11.1 56 250-305 7-66 (307)
276 3jxi_A Vanilloid receptor-rela 48.8 38 0.0013 31.2 7.3 88 85-172 12-117 (260)
277 1n11_A Ankyrin; clathrin, BAND 48.1 2.2E+02 0.0076 28.4 15.7 107 56-172 25-137 (437)
278 1wdy_A 2-5A-dependent ribonucl 47.1 1.7E+02 0.0058 26.7 14.0 107 56-172 16-129 (285)
279 3hra_A Ankyrin repeat family p 45.9 1.3E+02 0.0043 26.0 10.1 49 56-109 16-66 (201)
280 3eiq_C Programmed cell death p 45.0 2.1E+02 0.0073 28.0 12.0 28 249-276 57-84 (358)
281 1k1a_A B-cell lymphoma 3-encod 44.7 1.1E+02 0.0039 27.3 9.9 56 117-172 13-70 (241)
282 3ltj_A Alpharep-4; protein eng 43.2 1.6E+02 0.0056 25.4 20.7 45 248-292 30-74 (201)
283 2l0z_A Glycoprotein G2; zinc-b 41.0 8.6 0.00029 23.7 0.8 17 663-679 12-29 (42)
284 3eu9_A Huntingtin-interacting 39.6 1.2E+02 0.0041 27.0 9.1 106 56-170 20-131 (240)
285 3kea_A K1L; tropism, ANK repea 38.7 83 0.0028 29.5 8.0 16 154-169 68-83 (285)
286 2r9g_A AAA ATPase, central reg 38.1 2.1E+02 0.0072 25.2 10.0 56 288-344 25-85 (204)
287 3ltm_A Alpha-REP4; protein eng 37.9 2E+02 0.007 25.0 20.3 146 252-408 39-184 (211)
288 2ion_A PDCD4, programmed cell 37.8 1.8E+02 0.0062 24.4 10.0 65 249-313 12-81 (152)
289 3kea_A K1L; tropism, ANK repea 35.3 1.8E+02 0.0063 27.0 9.9 106 56-170 10-117 (285)
290 2pnn_A Transient receptor pote 35.1 1.4E+02 0.0049 27.4 9.1 97 74-172 10-125 (273)
291 2d2s_A Exocyst complex compone 34.9 2.1E+02 0.0073 26.0 9.6 84 284-370 25-114 (235)
292 3ltj_A Alpharep-4; protein eng 34.8 2.2E+02 0.0076 24.5 19.9 24 168-191 51-74 (201)
293 1oyz_A Hypothetical protein YI 34.4 2.8E+02 0.0095 25.5 20.7 58 346-408 205-262 (280)
294 4a1g_A Mitotic checkpoint seri 34.0 2.1E+02 0.0072 24.0 9.1 53 398-450 83-136 (152)
295 2nsz_A Programmed cell death p 33.6 1.9E+02 0.0065 23.4 11.3 64 250-313 11-79 (129)
296 3bge_A Predicted ATPase; struc 31.8 2.3E+02 0.0078 24.9 8.6 45 283-327 10-57 (201)
297 3b7b_A Euchromatic histone-lys 31.0 1.3E+02 0.0046 26.7 7.9 19 152-170 81-99 (237)
298 2qx5_A Nucleoporin NIC96; mRNA 30.6 4.7E+02 0.016 28.1 12.8 19 255-273 452-470 (661)
299 3esl_A Checkpoint serine/threo 30.4 2.8E+02 0.0097 24.5 9.1 81 62-143 64-148 (202)
300 3hra_A Ankyrin repeat family p 30.2 1.8E+02 0.0063 24.8 8.5 148 86-246 13-173 (201)
301 3ljn_A Hypothetical protein; a 30.1 1.2E+02 0.0042 29.4 8.0 14 358-371 181-194 (364)
302 4b4t_S RPN3, 26S proteasome re 29.5 4.5E+02 0.015 27.2 11.8 123 346-476 230-367 (523)
303 2wvi_A Mitotic checkpoint seri 29.2 2.7E+02 0.0091 23.7 9.6 54 398-451 78-132 (164)
304 1zbp_A Hypothetical protein VP 28.7 1.7E+02 0.0059 27.3 7.8 53 390-444 7-60 (273)
305 3ctd_A Putative ATPase, AAA fa 28.7 3.1E+02 0.011 24.4 9.3 62 283-344 38-107 (213)
306 2pk8_A Uncharacterized protein 28.4 26 0.0009 26.2 1.7 47 568-622 13-59 (103)
307 2rfa_A Transient receptor pote 27.7 3.1E+02 0.011 24.0 9.9 46 198-243 136-183 (232)
308 3aji_A 26S proteasome non-ATPa 27.3 1.7E+02 0.0057 25.9 7.8 9 302-310 190-198 (231)
309 3b7b_A Euchromatic histone-lys 26.9 1.1E+02 0.0037 27.4 6.4 17 255-271 83-99 (237)
310 3ygs_P Procaspase 9; apoptosis 26.7 65 0.0022 24.7 3.9 37 56-94 51-87 (97)
311 2ion_A PDCD4, programmed cell 26.2 2.9E+02 0.0098 23.1 8.4 62 350-413 12-78 (152)
312 2fe3_A Peroxide operon regulat 25.0 2E+02 0.0067 23.8 7.1 44 178-221 23-66 (145)
313 3ljn_A Hypothetical protein; a 24.6 1.6E+02 0.0054 28.6 7.6 18 254-271 178-195 (364)
314 2lo3_A SAGA-associated factor 23.7 26 0.00088 21.8 0.8 12 636-647 16-27 (44)
315 4b4t_S RPN3, 26S proteasome re 23.1 6.3E+02 0.022 26.1 11.5 61 75-139 231-299 (523)
316 2fe3_A Peroxide operon regulat 23.1 1.7E+02 0.0059 24.1 6.3 27 79-105 25-51 (145)
317 3aji_A 26S proteasome non-ATPa 23.0 1.6E+02 0.0054 26.1 6.7 19 253-271 10-28 (231)
318 1qsa_A Protein (soluble lytic 22.4 7.2E+02 0.025 26.4 36.3 367 56-451 86-486 (618)
319 3jxi_A Vanilloid receptor-rela 22.3 98 0.0034 28.3 5.2 109 56-169 16-161 (260)
320 4gq2_M Nucleoporin NUP120; bet 22.2 6.7E+02 0.023 28.3 12.9 129 252-394 816-950 (950)
321 1ug3_A EIF4GI, eukaryotic prot 22.1 4E+02 0.014 25.7 9.7 59 351-411 15-77 (339)
322 2r9g_A AAA ATPase, central reg 22.1 4.1E+02 0.014 23.4 10.0 44 386-430 17-63 (204)
323 3qye_A TBC1 domain family memb 22.0 5.1E+02 0.018 24.7 10.5 130 90-226 164-309 (331)
324 2xig_A Ferric uptake regulatio 21.9 2.6E+02 0.009 23.1 7.3 47 176-222 26-72 (150)
325 2k0q_A Putative uncharacterize 21.9 29 0.00098 24.5 0.9 22 656-677 8-29 (74)
326 3txn_A 26S proteasome regulato 21.7 5.9E+02 0.02 25.2 31.3 216 317-542 104-345 (394)
327 2ko4_A Mediator of RNA polymer 21.5 1.6E+02 0.0055 21.4 4.6 40 62-101 23-62 (81)
328 2hgo_A CASSIICOLIN; toxin, dis 21.5 19 0.00065 19.1 -0.1 14 667-680 7-22 (27)
329 1ug3_A EIF4GI, eukaryotic prot 21.1 4.6E+02 0.016 25.3 9.9 60 250-309 15-78 (339)
330 3bge_A Predicted ATPase; struc 21.0 4.3E+02 0.015 23.2 8.7 38 392-429 19-56 (201)
331 3eu9_A Huntingtin-interacting 20.1 2.6E+02 0.0088 24.6 7.6 21 151-171 45-65 (240)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3e-42 Score=383.76 Aligned_cols=508 Identities=8% Similarity=-0.044 Sum_probs=402.3
Q ss_pred HHHHhccccccHHHHHHHhh----hhhhHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCCCCCcchHHHHHHHHHhCC
Q 037256 14 QLLKSCNFLASLRQIHSSLT----TSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKSYSFLWNTMIRAYANNG 89 (680)
Q Consensus 14 ~~l~~~~~~~~~~~~h~~~~----~~~~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~~p~~~~~~~li~~~~~~g 89 (680)
.+...+.....++++|.... .......+...+.+ + |.+..+...|+.++.. ++..|+.++..+.+.|
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g 98 (597)
T 2xpi_A 28 AAYMTPPSMGALNANNSNSQLSTLTISPMTYLANNTST-D------GSFLKERNAQNTDSLS--REDYLRLWRHDALMQQ 98 (597)
T ss_dssp -----------------CTTSCGGGGCGGGGGC----------------------------C--HHHHHHHHHHHHHHTT
T ss_pred HHhcCCccHHHHhhccccccccceeechhhhhcccccc-c------CccCCCCCccccchHH--HHHHHHHHHHHHHHcc
Confidence 33333444444466676554 11112223334555 6 8889999999988876 8999999999999999
Q ss_pred CchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHh
Q 037256 90 HCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFD 169 (680)
Q Consensus 90 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~ 169 (680)
++++|+.+|++|.. ..|+..++..++.+|.+.|++++|..+++.+... ++++.+++.++.+|.++|++++|.++|+
T Consensus 99 ~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 174 (597)
T 2xpi_A 99 QYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLG 174 (597)
T ss_dssp CHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred CchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHh
Confidence 99999999999985 4678899999999999999999999999988653 6789999999999999999999999999
Q ss_pred cCCCC-------------------ChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCC-HhHHHHHHHHHhccCChHH
Q 037256 170 EMSVR-------------------DLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSD-SVTIVSVASAVGQLGDVLK 229 (680)
Q Consensus 170 ~~~~~-------------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~ 229 (680)
++... ++.+|+.++.+|.+.|++++|+++|++|.+.+ |+ ...+..+...+...+..+.
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~ 252 (597)
T 2xpi_A 175 ETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEW 252 (597)
T ss_dssp SSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHH
T ss_pred ccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHH
Confidence 65433 47899999999999999999999999999864 43 4444444443333322222
Q ss_pred H--HHH-HHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHHcCChhHHHHHHHHHH
Q 037256 230 A--QAV-HGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEK--RDLISWNSMLTGYIQNGQASEALLLFDEMQ 304 (680)
Q Consensus 230 a--~~~-~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 304 (680)
+ ..+ +..+...+......+++.++.+|.+.|++++|.++|+++.+ ++..+|+.++.+|.+.|++++|+++|+++.
T Consensus 253 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 332 (597)
T 2xpi_A 253 DLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKIL 332 (597)
T ss_dssp HHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 1 111 44455555556667788889999999999999999999988 799999999999999999999999999999
Q ss_pred hCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCC-CCHhHH
Q 037256 305 NSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSE-RNVSSW 383 (680)
Q Consensus 305 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~-~~~~~~ 383 (680)
+.+ +.+..++..++.++...|+.++|..+++.+.+.. +.+..+++.++.+|.++|++++|.++|+++.... .+..+|
T Consensus 333 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 410 (597)
T 2xpi_A 333 EID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAW 410 (597)
T ss_dssp HHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHH
Confidence 765 4477889999999999999999999999998765 6688999999999999999999999999985444 468899
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhc
Q 037256 384 NVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRA 463 (680)
Q Consensus 384 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 463 (680)
+.++.+|.+.|++++|+++|++|.+.+ +++..+|..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.
T Consensus 411 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 488 (597)
T 2xpi_A 411 IGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNK 488 (597)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHh
Confidence 999999999999999999999999852 3467899999999999999999999999999864 45788999999999999
Q ss_pred CCHHHHHHHHHhC-------CCCCC--HhHHHHHHHHHHHH-----HHHHHHHHHccCCCCCchHHHHHHHHHhcCChhH
Q 037256 464 GCLYEAFDMIKQM-------PLPPN--DSVWGALLLACRIH-----GEIAANYLFQLEPEHTGYFVLMSNIYAASNKWRE 529 (680)
Q Consensus 464 g~~~~A~~~~~~m-------~~~p~--~~~~~~ll~a~~~~-----~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~ 529 (680)
|++++|.++|+++ +..|+ ..+|..+..+|... |...++++++++|+++.+|..++.+|.+.|++++
T Consensus 489 g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 568 (597)
T 2xpi_A 489 SDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGL 568 (597)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHH
Confidence 9999999999988 45787 67999999999887 7788889999999999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 037256 530 VGKLREDMKNK 540 (680)
Q Consensus 530 A~~~~~~m~~~ 540 (680)
|.+.++++.+.
T Consensus 569 A~~~~~~~l~~ 579 (597)
T 2xpi_A 569 AITHLHESLAI 579 (597)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999999874
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.9e-39 Score=355.68 Aligned_cols=476 Identities=9% Similarity=-0.001 Sum_probs=401.8
Q ss_pred hhhhHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccH
Q 037256 34 TSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKSYSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTF 113 (680)
Q Consensus 34 ~~~~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 113 (680)
++..++.++..|.+ . |++++|..+|+++....||..+|+.++.+|.+.|++++|+.+|+++... +++..++
T Consensus 83 ~~~~~~~~~~~~~~-~------g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ 153 (597)
T 2xpi_A 83 REDYLRLWRHDALM-Q------QQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACR 153 (597)
T ss_dssp HHHHHHHHHHHHHH-T------TCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHH
T ss_pred HHHHHHHHHHHHHH-c------cCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHH
Confidence 78899999999999 8 9999999999999877788899999999999999999999999998653 6788999
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHh---------------CCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC---C
Q 037256 114 PFVLKACASNSLILEGKVVHGDIIRT---------------GFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVR---D 175 (680)
Q Consensus 114 ~~ll~~~~~~~~~~~a~~~~~~~~~~---------------g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~~---~ 175 (680)
+.++.++.+.|++++|.++|+++... |.+.+..+|+.++.+|.+.|++++|.++|+++... +
T Consensus 154 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 233 (597)
T 2xpi_A 154 YLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKC 233 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchh
Confidence 99999999999999999999853211 22335889999999999999999999999998643 4
Q ss_pred hhHHHHHHHHHHhCCCccHHHHH---HHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHH
Q 037256 176 LVSWTVMITAYEQAEKPEEALIL---FQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSI 252 (680)
Q Consensus 176 ~~~~~~li~~~~~~g~~~~A~~~---~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~L 252 (680)
...|..+...+...+..+.+... +..+...+..++..+|..++..|.+.|++++|.++++.+.+. +++..+++.+
T Consensus 234 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l 311 (597)
T 2xpi_A 234 YEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCK 311 (597)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHH
T ss_pred hHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHH
Confidence 45666666555544333322211 455555555556667777788888999999999999988776 5789999999
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchH
Q 037256 253 VAMYARCGNVEKARLVFDMMEK---RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQ 329 (680)
Q Consensus 253 i~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 329 (680)
+.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..++..+...+.+.|+++
T Consensus 312 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 390 (597)
T 2xpi_A 312 ADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKIS 390 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHH
Confidence 9999999999999999998863 467889999999999999999999999998653 567888999999999999999
Q ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 037256 330 LGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLE 408 (680)
Q Consensus 330 ~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 408 (680)
+|.++++.+.+.. +.+..+++.++.+|.+.|++++|.++|+++....| +..+|+.++.+|.+.|++++|.++|++|.+
T Consensus 391 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (597)
T 2xpi_A 391 EARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYA 469 (597)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999998765 45788999999999999999999999998855444 688999999999999999999999999998
Q ss_pred cCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhc----CCCcC--hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-
Q 037256 409 EGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKL----SVKPE--VKHYACMVDMLGRAGCLYEAFDMIKQM-PLPP- 480 (680)
Q Consensus 409 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p- 480 (680)
.. +.+..+|+.+...|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.+.++++ ...|
T Consensus 470 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 548 (597)
T 2xpi_A 470 LF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN 548 (597)
T ss_dssp HC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC
T ss_pred hC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 53 336778999999999999999999999999876 66787 789999999999999999999999887 3344
Q ss_pred CHhHHHHHHHHHHHH-----HHHHHHHHHccCCCCCchHHHHHHHHHh
Q 037256 481 NDSVWGALLLACRIH-----GEIAANYLFQLEPEHTGYFVLMSNIYAA 523 (680)
Q Consensus 481 ~~~~~~~ll~a~~~~-----~~~~~~~~~~l~p~~~~~~~~l~~~~~~ 523 (680)
+..+|..+...|... |...++++++++|+++..+..|+++|..
T Consensus 549 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 549 DANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 678888888888776 7778889999999999999999998754
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=7.9e-28 Score=257.28 Aligned_cols=186 Identities=16% Similarity=0.205 Sum_probs=174.4
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhc---------chHHHHHHHHHHHHcCCCCchH
Q 037256 278 ISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLG---------SRQLGRKFHGYIINSNMKIDAT 348 (680)
Q Consensus 278 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g---------~~~~a~~i~~~~~~~~~~~~~~ 348 (680)
..++.+|.+|++.|++++|+++|++|.+.|++||.+||+++|.+|+..+ .++.|.++|+.|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 4578889999999999999999999999999999999999999998654 4788999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhcCCC--CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 037256 349 LRNAVMDMYAKCGDLDTAENMFNDIHPS--ERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACS 426 (680)
Q Consensus 349 ~~~~li~~y~k~g~~~~A~~~f~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 426 (680)
+||+||++|++.|++++|.++|++|... .||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||++||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 9999999999999999999999999543 79999999999999999999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhc
Q 037256 427 HAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRA 463 (680)
Q Consensus 427 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 463 (680)
+.|++++|.++|++|.+.|..|+..||+.+++.|...
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999998764
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=5.7e-25 Score=230.39 Aligned_cols=374 Identities=12% Similarity=0.099 Sum_probs=241.6
Q ss_pred HHHHHhCCCchHHHHHHHHHHhCCCCCC-cccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 037256 82 IRAYANNGHCVETLELYSTMRRSGISSN-SYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQ 160 (680)
Q Consensus 82 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~ 160 (680)
...+.+.|++++|++.|+++.+.. |+ ...+..+...+...|++++|...++..++.. +.+...+..+...|.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 344556677777777776666542 33 3344444455566667777776666666653 4455666666666666666
Q ss_pred hHHHHHHHhcCC--CC-ChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHH
Q 037256 161 TDDGCKVFDEMS--VR-DLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYA 237 (680)
Q Consensus 161 ~~~A~~~f~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 237 (680)
+++|...|+++. .| +..+|..+...+.+.|++++|++.|+++.+.. |+
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~--------------------------- 133 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PD--------------------------- 133 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TT---------------------------
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC---------------------------
Confidence 666666666553 12 34456666666666666666666666665532 22
Q ss_pred HHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhh
Q 037256 238 ICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEK---RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVT 314 (680)
Q Consensus 238 ~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 314 (680)
+...+..+...|...|++++|.+.|+++.+ .+..+|+.+...+.+.|++++|+..|+++.+.. +.+...
T Consensus 134 -------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 205 (388)
T 1w3b_A 134 -------LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDA 205 (388)
T ss_dssp -------CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred -------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHH
Confidence 223334444455555555555555555432 234556666666666666666666666666542 223445
Q ss_pred HHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhc
Q 037256 315 ALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMH 393 (680)
Q Consensus 315 ~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~ 393 (680)
+..+...+...|++++|...+....+.. +.+..++..+...|.+.|++++|.+.|+++....| +..+|..+...|.+.
T Consensus 206 ~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 284 (388)
T 1w3b_A 206 YINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEK 284 (388)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Confidence 5556666666666666666666665543 34566777778888888888888888887755444 466788888888888
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHH
Q 037256 394 GHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMI 473 (680)
Q Consensus 394 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 473 (680)
|++++|++.|+++.+. .+++..++..+...+...|++++|.+.++++.+.. +.+...+..+...|.+.|++++|.+.+
T Consensus 285 g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 362 (388)
T 1w3b_A 285 GSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHY 362 (388)
T ss_dssp SCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888888888875 23455678888888888888888888888887643 445677888888888888888888887
Q ss_pred HhCCCCCCHhHHHHHHHHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcC
Q 037256 474 KQMPLPPNDSVWGALLLACRIHGEIAANYLFQLEPEHTGYFVLMSNIYAASN 525 (680)
Q Consensus 474 ~~m~~~p~~~~~~~ll~a~~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g 525 (680)
+++ ++++|+++..+..++.++...|
T Consensus 363 ~~a---------------------------~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 363 KEA---------------------------IRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHH---------------------------HTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHH---------------------------HhhCCCCHHHHHhHHHHHHHcc
Confidence 764 3456666677777777766655
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=7.1e-27 Score=249.89 Aligned_cols=202 Identities=12% Similarity=0.119 Sum_probs=175.4
Q ss_pred hHHHHHHHHHHhCCCCCCH-hhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCC---------H
Q 037256 294 SEALLLFDEMQNSDCKPNP-VTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGD---------L 363 (680)
Q Consensus 294 ~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~---------~ 363 (680)
..+..+.+++.+.+..+.+ ..++.+|.+|++.|++++|.++|+.|.+.|+.||..+||+||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 4456677788877766544 46888999999999999999999999999999999999999999998765 6
Q ss_pred HHHHHHHhhcCCC--CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHh
Q 037256 364 DTAENMFNDIHPS--ERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADM 441 (680)
Q Consensus 364 ~~A~~~f~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 441 (680)
++|.++|++|... .||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 8899999999443 79999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCHhHHHHHHHHHHHH
Q 037256 442 TKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM---PLPPNDSVWGALLLACRIH 495 (680)
Q Consensus 442 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~a~~~~ 495 (680)
.+.|+.||..+|++||++|++.|++++|.+++++| +..|+..||++++..+...
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999 7899999999999998764
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=2.4e-24 Score=225.64 Aligned_cols=362 Identities=9% Similarity=0.032 Sum_probs=277.9
Q ss_pred CChHHHHHHhhhccCCCCC-cchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHH
Q 037256 56 GEPNTARSLFNSIHNDKSY-SFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHG 134 (680)
Q Consensus 56 g~~~~A~~~f~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 134 (680)
|++++|.+.|+.+....|+ ...+..+...+.+.|++++|...++...+.. +.+..+|..+..++.+.|++++|...++
T Consensus 13 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 91 (388)
T 1w3b_A 13 GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYR 91 (388)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999999888784 5567778888899999999999999988764 3477889999999999999999999999
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--C-ChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCH
Q 037256 135 DIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSV--R-DLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDS 211 (680)
Q Consensus 135 ~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 211 (680)
.+++.. +.+...+..+...|.+.|++++|.+.|+++.. | +...+..+...+...|++++|.+.|+++.+.. +.+.
T Consensus 92 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~ 169 (388)
T 1w3b_A 92 HALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFA 169 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCH
Confidence 999875 44567899999999999999999999998752 3 45678889999999999999999999998763 3356
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHH
Q 037256 212 VTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEK---RDLISWNSMLTGYI 288 (680)
Q Consensus 212 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~ 288 (680)
.++..+...+...|++++|...++.+++.+ +.+...+..+...+...|++++|...|++..+ .+..+|..+...|.
T Consensus 170 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 248 (388)
T 1w3b_A 170 VAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYY 248 (388)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHH
Confidence 778888888888999999999988888765 34566777788888888888888888876643 35677788888888
Q ss_pred HcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHH
Q 037256 289 QNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAEN 368 (680)
Q Consensus 289 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~ 368 (680)
+.|++++|++.|+++.+.. +.+..++..+..++...|++++|...++.+.+.. +.+..+++.+...|.+.|++++|.+
T Consensus 249 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 326 (388)
T 1w3b_A 249 EQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVR 326 (388)
T ss_dssp HTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888888887653 3345566667777777777777777777776654 4556666667777777777777777
Q ss_pred HHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHH
Q 037256 369 MFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHI-TFTSILSAC 425 (680)
Q Consensus 369 ~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~ 425 (680)
.|+++....| +..+|..+...|.+.|++++|++.|+++.+ ..|+.. .+..+...+
T Consensus 327 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg~~~ 383 (388)
T 1w3b_A 327 LYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTL 383 (388)
T ss_dssp HHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhHHHHH
Confidence 7776654444 355666666677777777777777776665 455432 444444333
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=4.6e-22 Score=216.21 Aligned_cols=250 Identities=11% Similarity=0.028 Sum_probs=167.1
Q ss_pred cCCHHHHHHHHHhcCC----------------C-ChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 037256 259 CGNVEKARLVFDMMEK----------------R-DLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSA 321 (680)
Q Consensus 259 ~g~~~~A~~~f~~m~~----------------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 321 (680)
.|++++|...|+++.+ + +..+|..+...+...|++++|...|+++.+.. |+...+..+...
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~ 279 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALI 279 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHH
Confidence 5666666666655433 1 23456666667777777777777777766543 235566666666
Q ss_pred HhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHH
Q 037256 322 CTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKAL 400 (680)
Q Consensus 322 ~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~ 400 (680)
+...|+++.|...+..+.+.. +.+..++..+...|.+.|++++|...|+++....| +...|..+...|...|++++|+
T Consensus 280 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 358 (514)
T 2gw1_A 280 MADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCE 358 (514)
T ss_dssp HHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHH
Confidence 666777777777776666544 33555666677777777777777777776643333 4556666777777777777777
Q ss_pred HHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhc-CCCcC----hHHHHHHHHHHHh---cCCHHHHHH
Q 037256 401 EFFSQMLEEGVKP-DHITFTSILSACSHAGLIDEGRKCFADMTKL-SVKPE----VKHYACMVDMLGR---AGCLYEAFD 471 (680)
Q Consensus 401 ~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~p~----~~~~~~li~~~~~---~g~~~~A~~ 471 (680)
..++++.+. .| +..++..+...+...|++++|...++++.+. .-.++ ...+..+...|.+ .|++++|.+
T Consensus 359 ~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~ 436 (514)
T 2gw1_A 359 TLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATN 436 (514)
T ss_dssp HHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHH
T ss_pred HHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHH
Confidence 777777663 33 3446666666777777777777777776654 11122 3366666677777 777777766
Q ss_pred HHHhCCCCCCHhHHHHHHHHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 037256 472 MIKQMPLPPNDSVWGALLLACRIHGEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNK 540 (680)
Q Consensus 472 ~~~~m~~~p~~~~~~~ll~a~~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 540 (680)
.+++ ++++.|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 437 ~~~~---------------------------a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 437 LLEK---------------------------ASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHH---------------------------HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHH---------------------------HHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 6654 45567888889999999999999999999999998874
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=3.2e-21 Score=209.55 Aligned_cols=430 Identities=10% Similarity=-0.055 Sum_probs=285.7
Q ss_pred HHHHhhhhhhhcccCCCChHHHHHHhhhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 037256 40 QALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKSYSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKA 119 (680)
Q Consensus 40 ~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 119 (680)
.+-..|.+ . |++++|+..|+++....||..+|..+..++.+.|++++|+..|+++.+.++ .+..++..+..+
T Consensus 11 ~~g~~~~~-~------g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 82 (514)
T 2gw1_A 11 DKGNQFFR-N------KKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHH-T------SCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHH
T ss_pred HHHHHHHH-h------ccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHH
Confidence 34445555 5 999999999999988888888999999999999999999999999987642 255688888899
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC----CChhHHHHHHHHHHhCCCccHH
Q 037256 120 CASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSV----RDLVSWTVMITAYEQAEKPEEA 195 (680)
Q Consensus 120 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A 195 (680)
+...|++++|...++.+.+.+ +++......++..+.+......+.+.+..+.. ++...++.-.............
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 999999999999999998876 34444444555544443333333332221110 0000010000000111111111
Q ss_pred HHHHHHHHHcCCC--------CC-HhHHHHHHHHHh---ccCChHHHHHHHHHHHH-----ccC--------CCChhHHH
Q 037256 196 LILFQKTQQEGLL--------SD-SVTIVSVASAVG---QLGDVLKAQAVHGYAIC-----NAF--------LEDLCIQN 250 (680)
Q Consensus 196 ~~~~~~m~~~g~~--------p~-~~t~~~ll~~~~---~~~~~~~a~~~~~~~~~-----~g~--------~~~~~~~~ 250 (680)
..+...+...... |+ ...+......+. ..|++++|...+..+++ ..- +.+..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 1111111111100 11 222333333333 36777777777777766 211 22355677
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcch
Q 037256 251 SIVAMYARCGNVEKARLVFDMMEK--RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSR 328 (680)
Q Consensus 251 ~Li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 328 (680)
.+...|...|++++|...|+++.+ |+...|..+...|...|++++|+..|+++.+.. +.+...+..+...+...|++
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCH
Confidence 777888888888888888877642 336677778888888888888888888887653 34556677777788888888
Q ss_pred HHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 037256 329 QLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQML 407 (680)
Q Consensus 329 ~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 407 (680)
+.|...+..+.+.. +.+...+..+...|.+.|++++|...|+++....| +...|..+...|...|++++|...++++.
T Consensus 321 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 321 DQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp THHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 88888888887765 34567778888888888888888888887744333 46678888888888888888888888887
Q ss_pred HcCCCCC-------HHHHHHHHHHHHc---cCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-
Q 037256 408 EEGVKPD-------HITFTSILSACSH---AGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM- 476 (680)
Q Consensus 408 ~~g~~p~-------~~t~~~ll~a~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m- 476 (680)
+. .|+ ..++..+...+.. .|++++|...++.+.+.. +.+...+..+...|.+.|++++|.+.+++.
T Consensus 400 ~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 400 EL--ENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476 (514)
T ss_dssp HH--HHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred Hh--hhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 63 232 2277778888888 888888888888887753 345677788888888888988888888876
Q ss_pred CCCCCHh
Q 037256 477 PLPPNDS 483 (680)
Q Consensus 477 ~~~p~~~ 483 (680)
.+.|+..
T Consensus 477 ~~~~~~~ 483 (514)
T 2gw1_A 477 DLARTME 483 (514)
T ss_dssp HHCSSHH
T ss_pred HhccccH
Confidence 4455543
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.89 E-value=3.2e-20 Score=198.12 Aligned_cols=313 Identities=11% Similarity=0.041 Sum_probs=166.1
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 037256 143 SDSYVQAALVDMYAKCGQTDDGCKVFDEMS---VRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVAS 219 (680)
Q Consensus 143 ~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 219 (680)
.+...+..+...|.+.|++++|...|+++. ..+..+|..+...|.+.|++++|++.|+++.+.+ +.+..++..+..
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 345556666666666666666666666543 2345566666666666666666666666665543 223444555555
Q ss_pred HHhccCChHHHHHHHHHHHHccCCCCh---hHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHH
Q 037256 220 AVGQLGDVLKAQAVHGYAICNAFLEDL---CIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEA 296 (680)
Q Consensus 220 ~~~~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 296 (680)
.+...|++++|...+..+.+.. +.+. ..+..++..+... .+..+...+.+.|++++|
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~A 162 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQ-------------------RLRSQALNAFGSGDYTAA 162 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHH-------------------HHHHHHHHHHHcCCHHHH
Confidence 5555555555555555554432 1122 2333332220000 011112235555566666
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCC
Q 037256 297 LLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPS 376 (680)
Q Consensus 297 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~ 376 (680)
+..|+++.+.. +.+...+..+..++...|++++|...+..+.+.. +.+..++..+..+|.+.|++++|.+.|+++...
T Consensus 163 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 240 (450)
T 2y4t_A 163 IAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 240 (450)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 66665555432 3344455555555555555555555555555443 334555555666666666666666666655333
Q ss_pred CCC-HhHHHHH------------HHHHHhcCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHccCCHHHHHHHH
Q 037256 377 ERN-VSSWNVL------------IAGYGMHGHGRKALEFFSQMLEEGVKPD-----HITFTSILSACSHAGLIDEGRKCF 438 (680)
Q Consensus 377 ~~~-~~~~~~l------------i~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~t~~~ll~a~~~~g~~~~a~~~~ 438 (680)
.|+ ...+..+ ...|...|++++|+..|+++.+ +.|+ ...+..+...+.+.|++++|...+
T Consensus 241 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 318 (450)
T 2y4t_A 241 DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVC 318 (450)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 332 2333333 5556666666666666666665 3343 224555555666666666666666
Q ss_pred HHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 037256 439 ADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM-PLPPN 481 (680)
Q Consensus 439 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 481 (680)
+++.+.. +.+...|..+..+|...|++++|.+.++++ .+.|+
T Consensus 319 ~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 361 (450)
T 2y4t_A 319 SEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN 361 (450)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS
T ss_pred HHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence 6665542 234556666666666666666666666654 44444
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.89 E-value=9.3e-21 Score=202.34 Aligned_cols=382 Identities=10% Similarity=0.005 Sum_probs=216.5
Q ss_pred ChHHHHHHhhhccCCCC-CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHH
Q 037256 57 EPNTARSLFNSIHNDKS-YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGD 135 (680)
Q Consensus 57 ~~~~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 135 (680)
....+...|.......| +...|..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...++.
T Consensus 7 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 85 (450)
T 2y4t_A 7 HSSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTK 85 (450)
T ss_dssp ----------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccccccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 33445555666655666 56778888888888888888888888887753 23567778888888888888888888888
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC---Ch---hHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCC
Q 037256 136 IIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVR---DL---VSWTVMITAYEQAEKPEEALILFQKTQQEGLLS 209 (680)
Q Consensus 136 ~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~~---~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 209 (680)
+++.+ +.+..++..+..+|.+.|++++|.+.|+++... +. ..|..++..+...+
T Consensus 86 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------------------- 145 (450)
T 2y4t_A 86 VIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR------------------- 145 (450)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH-------------------
T ss_pred HHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHH-------------------
Confidence 88875 445677778888888888888888888776543 22 45555544311100
Q ss_pred CHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHH
Q 037256 210 DSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEK---RDLISWNSMLTG 286 (680)
Q Consensus 210 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~ 286 (680)
+..+...+...|++++|...+..+.+.. +.+..++..+..+|.+.|++++|.+.|+++.+ .+..+|..+...
T Consensus 146 ----~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 220 (450)
T 2y4t_A 146 ----LRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTL 220 (450)
T ss_dssp ----HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred ----HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 1111122233344444444444444332 23344455555555555555555555555432 344555555555
Q ss_pred HHHcCChhHHHHHHHHHHhCCCCCC-HhhHHHH------------HHHHhhhcchHHHHHHHHHHHHcCCCCc----hHH
Q 037256 287 YIQNGQASEALLLFDEMQNSDCKPN-PVTALIL------------VSACTYLGSRQLGRKFHGYIINSNMKID----ATL 349 (680)
Q Consensus 287 ~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l------------l~a~~~~g~~~~a~~i~~~~~~~~~~~~----~~~ 349 (680)
|.+.|++++|+..|+++.+. .|+ ...+..+ ...+...|++++|...+..+.+.... + ..+
T Consensus 221 ~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~ 297 (450)
T 2y4t_A 221 YYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRS 297 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHH
Confidence 55556666666555555543 222 2222222 45566666666666666666554311 1 235
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHH-----
Q 037256 350 RNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHI-TFTSIL----- 422 (680)
Q Consensus 350 ~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll----- 422 (680)
+..+..+|.+.|++++|...++++....| +...|..+..+|...|++++|...|+++.+ +.|+.. .+..+.
T Consensus 298 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~ 375 (450)
T 2y4t_A 298 KERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLEKAQRL 375 (450)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHHHHHHH
Confidence 66667777777777777777776633333 466777777777777777777777777766 556543 333333
Q ss_pred -------HHHHccC-----CHHHHHHHHHHh-hhc--CCCcC-------hHHHHHHHHHHHhcCCHHHH
Q 037256 423 -------SACSHAG-----LIDEGRKCFADM-TKL--SVKPE-------VKHYACMVDMLGRAGCLYEA 469 (680)
Q Consensus 423 -------~a~~~~g-----~~~~a~~~~~~m-~~~--~~~p~-------~~~~~~li~~~~~~g~~~~A 469 (680)
..|...| ..+++.+.++++ .+. ...|+ ...+..+..+|...|+.+++
T Consensus 376 ~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 376 LKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp HHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred hhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 1233344 556667766653 222 11122 23666777777777776654
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.88 E-value=7.2e-21 Score=208.13 Aligned_cols=424 Identities=13% Similarity=0.062 Sum_probs=264.9
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 037256 75 SFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDM 154 (680)
Q Consensus 75 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~ 154 (680)
...|..+...+.+.|++++|++.|+++.+..+ .+..++..+..++...|++++|.+.++.+++.. +.+...+..+...
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 35677788888889999999999998887642 366778888888888899999999999888876 4567788888888
Q ss_pred HHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHc------CCCCCHhHHHHHHHHHhccCChH
Q 037256 155 YAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEKPEEALILFQKTQQE------GLLSDSVTIVSVASAVGQLGDVL 228 (680)
Q Consensus 155 ~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~t~~~ll~~~~~~~~~~ 228 (680)
|...|++++|...|+.+. .+....+..+..+...+...+|+..++++... ...|+...+...+ ...+.+
T Consensus 103 ~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFF----GIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHH----HTSCHH
T ss_pred HHHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHH----HhcChH
Confidence 888999999998886442 22223333344555556667788888887543 1223333332222 223333
Q ss_pred HHHHHHHHHHHccCCCChh---HHHHHHHHHHh--------cCCHHHHHHHHHhcCCC--C--------hhHHHHHHHHH
Q 037256 229 KAQAVHGYAICNAFLEDLC---IQNSIVAMYAR--------CGNVEKARLVFDMMEKR--D--------LISWNSMLTGY 287 (680)
Q Consensus 229 ~a~~~~~~~~~~g~~~~~~---~~~~Li~~y~~--------~g~~~~A~~~f~~m~~~--~--------~~~~~~li~~~ 287 (680)
.+...+.. ....+.. ....+...+.. .|++++|..+|+++.+. + ..+|..+...+
T Consensus 178 ~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~ 253 (537)
T 3fp2_A 178 LEVSSVNT----SSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFH 253 (537)
T ss_dssp HHHHTSCC----CCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhh----ccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHH
Confidence 22221111 1111111 22333333222 23667777777766542 1 22455556667
Q ss_pred HHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHH
Q 037256 288 IQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAE 367 (680)
Q Consensus 288 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~ 367 (680)
...|++++|...|+++.+. .|+...+..+...+...|+++.|...+..+.+.. +.+..++..+...|.+.|++++|.
T Consensus 254 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 330 (537)
T 3fp2_A 254 FLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAK 330 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHH
Confidence 7777777777777777764 3445666666667777777777777777776654 345666666777777777777777
Q ss_pred HHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhcC
Q 037256 368 NMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPD-HITFTSILSACSHAGLIDEGRKCFADMTKLS 445 (680)
Q Consensus 368 ~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 445 (680)
+.|+++....| +...|..+...|...|++++|++.++++.+. .|+ ...+..+...+...|++++|.+.|+++.+..
T Consensus 331 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 331 EDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 77776633333 3456666667777777777777777777663 333 3456666666677777777777776665531
Q ss_pred -----CCcChHHHHHHHHHHHhc----------CCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHHHHHHHHHHccCCCC
Q 037256 446 -----VKPEVKHYACMVDMLGRA----------GCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEIAANYLFQLEPEH 510 (680)
Q Consensus 446 -----~~p~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~~~~~~l~p~~ 510 (680)
.......+..+...|.+. |++++|...++ +++++.|++
T Consensus 409 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~---------------------------~a~~~~p~~ 461 (537)
T 3fp2_A 409 EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLT---------------------------KACELDPRS 461 (537)
T ss_dssp HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHH---------------------------HHHHHCTTC
T ss_pred CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHH---------------------------HHHHhCCCC
Confidence 011112223333444444 55555555554 456778999
Q ss_pred CchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 037256 511 TGYFVLMSNIYAASNKWREVGKLREDMKNKG 541 (680)
Q Consensus 511 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 541 (680)
+..+..++.+|...|++++|.+.+++..+..
T Consensus 462 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 462 EQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999998743
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.86 E-value=9.6e-20 Score=199.16 Aligned_cols=428 Identities=8% Similarity=-0.005 Sum_probs=315.4
Q ss_pred hhHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCCCC-CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHH
Q 037256 36 GLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKS-YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFP 114 (680)
Q Consensus 36 ~~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 114 (680)
..+..+-..|.+ . |++++|.+.|+.+....| +..+|..+...+.+.|++++|++.|+++.+..+ .+..++.
T Consensus 26 ~~~~~~g~~~~~-~------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~ 97 (537)
T 3fp2_A 26 VQLKNRGNHFFT-A------KNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALL 97 (537)
T ss_dssp HHHHHHHHHHHH-T------TCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred HHHHHHHHHHHH-h------ccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHH
Confidence 444555666666 6 999999999999988877 678899999999999999999999999988653 2667888
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC------ChhHHHHHHHHHHh
Q 037256 115 FVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVR------DLVSWTVMITAYEQ 188 (680)
Q Consensus 115 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~ 188 (680)
.+..++...|++++|...++ .+.. .|+. .+..+..+...+....|...++++... ........+..+..
T Consensus 98 ~la~~~~~~g~~~~A~~~~~-~~~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 172 (537)
T 3fp2_A 98 RRASANESLGNFTDAMFDLS-VLSL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFG 172 (537)
T ss_dssp HHHHHHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHH-HHhc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHH
Confidence 88899999999999999996 3332 2222 222344555666678888888877542 12233445555666
Q ss_pred CCCccHHHHHHHHHHHcCCCCCHhHHHHHH-HHHhc--------cCChHHHHHHHHHHHHccCCCC------hhHHHHHH
Q 037256 189 AEKPEEALILFQKTQQEGLLSDSVTIVSVA-SAVGQ--------LGDVLKAQAVHGYAICNAFLED------LCIQNSIV 253 (680)
Q Consensus 189 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~~~~~--------~~~~~~a~~~~~~~~~~g~~~~------~~~~~~Li 253 (680)
..+.+.++..+..... ..+....+...+ ..+.. .+++++|..++..+++...... ..++..+.
T Consensus 173 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g 250 (537)
T 3fp2_A 173 IFDSHLEVSSVNTSSN--YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTG 250 (537)
T ss_dssp TSCHHHHHHTSCCCCS--SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHH
T ss_pred hcChHHHHHHHhhccc--cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHH
Confidence 6776666555443322 122222222222 22222 2477888888888877643221 22466777
Q ss_pred HHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHH
Q 037256 254 AMYARCGNVEKARLVFDMMEK--RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLG 331 (680)
Q Consensus 254 ~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 331 (680)
..+...|++++|...|++..+ |+...|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|+++.|
T Consensus 251 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 329 (537)
T 3fp2_A 251 IFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNA 329 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHH
Confidence 888999999999999998864 567888889999999999999999999998764 44677888999999999999999
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 037256 332 RKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEG 410 (680)
Q Consensus 332 ~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 410 (680)
...+..+.+.. +.+...+..+...|.+.|++++|.+.|+++....| +...|..+...|...|++++|.+.|+++.+..
T Consensus 330 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 330 KEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 99999998876 44678889999999999999999999998854444 46789999999999999999999999988743
Q ss_pred CC-C----CHHHHHHHHHHHHcc----------CCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHh
Q 037256 411 VK-P----DHITFTSILSACSHA----------GLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQ 475 (680)
Q Consensus 411 ~~-p----~~~t~~~ll~a~~~~----------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 475 (680)
.. + ....+......+... |++++|...|+++.+.. +.+...+..+...|.+.|++++|.+.+++
T Consensus 409 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 487 (537)
T 3fp2_A 409 EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFED 487 (537)
T ss_dssp HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 11 1 112244445667777 99999999999998864 45678899999999999999999999998
Q ss_pred C-CCCCC
Q 037256 476 M-PLPPN 481 (680)
Q Consensus 476 m-~~~p~ 481 (680)
. .+.|+
T Consensus 488 al~~~~~ 494 (537)
T 3fp2_A 488 SAILART 494 (537)
T ss_dssp HHHHC--
T ss_pred HHHhCCC
Confidence 6 34444
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.81 E-value=4.4e-17 Score=167.61 Aligned_cols=298 Identities=9% Similarity=0.021 Sum_probs=195.3
Q ss_pred hHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHH
Q 037256 177 VSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMY 256 (680)
Q Consensus 177 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y 256 (680)
..|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|++++|...+..+++.. +.+...+..+..+|
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHH
Confidence 344555555555555555555555555432 2234455555555555555555555555555543 22445555566666
Q ss_pred HhcCCHHHHHHHHHhcCCC------ChhHHHHH------------HHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHH
Q 037256 257 ARCGNVEKARLVFDMMEKR------DLISWNSM------------LTGYIQNGQASEALLLFDEMQNSDCKPNPVTALIL 318 (680)
Q Consensus 257 ~~~g~~~~A~~~f~~m~~~------~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 318 (680)
.+.|++++|...|+++.+. +...+..+ ...+...|++++|++.|+++.+.. +.+...+..+
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 160 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELR 160 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 6666666666666655432 22223222 567778888888888888877653 4456677777
Q ss_pred HHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCC-HhHHH------------H
Q 037256 319 VSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERN-VSSWN------------V 385 (680)
Q Consensus 319 l~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~-~~~~~------------~ 385 (680)
...+...|+++.|...+..+.+.. +.+..++..+...|.+.|++++|.+.|++.....|+ ...|. .
T Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (359)
T 3ieg_A 161 AECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIE 239 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHH
Confidence 777788888888888888777654 456677778888888888888888888877443443 33332 2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-----HHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHH
Q 037256 386 LIAGYGMHGHGRKALEFFSQMLEEGVKPDHI-----TFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDML 460 (680)
Q Consensus 386 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 460 (680)
+...+.+.|++++|+..++++.+. .|+.. .+..+...+...|++++|...++...+.. +.+...+..+...|
T Consensus 240 ~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 316 (359)
T 3ieg_A 240 SAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAY 316 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 355678888999999999888884 34432 24446677888889999999988888753 44677888888888
Q ss_pred HhcCCHHHHHHHHHhC-CCCCC
Q 037256 461 GRAGCLYEAFDMIKQM-PLPPN 481 (680)
Q Consensus 461 ~~~g~~~~A~~~~~~m-~~~p~ 481 (680)
.+.|++++|.+.+++. .+.|+
T Consensus 317 ~~~g~~~~A~~~~~~a~~~~p~ 338 (359)
T 3ieg_A 317 LIEEMYDEAIQDYEAAQEHNEN 338 (359)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHcCCHHHHHHHHHHHHhcCCC
Confidence 8899998888888775 34443
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.80 E-value=1.4e-16 Score=163.77 Aligned_cols=296 Identities=13% Similarity=0.105 Sum_probs=221.3
Q ss_pred HhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHH
Q 037256 211 SVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEK---RDLISWNSMLTGY 287 (680)
Q Consensus 211 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~ 287 (680)
...+..+...+...|++++|...+..+++.. +.+..++..+...|...|++++|...|+++.+ .+...|..+...+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 4556677788889999999999999998875 45677888899999999999999999998764 3667889999999
Q ss_pred HHcCChhHHHHHHHHHHhCCCCC----CHhhHHHH------------HHHHhhhcchHHHHHHHHHHHHcCCCCchHHHH
Q 037256 288 IQNGQASEALLLFDEMQNSDCKP----NPVTALIL------------VSACTYLGSRQLGRKFHGYIINSNMKIDATLRN 351 (680)
Q Consensus 288 ~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~l------------l~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~ 351 (680)
...|++++|...|+++.+. .| +...+..+ ...+...|+++.|...+..+.+.. +.+..++.
T Consensus 82 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 158 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRE 158 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHH
Confidence 9999999999999999875 34 33333333 356677788888888888777665 45667777
Q ss_pred HHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHH----------
Q 037256 352 AVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHI-TFT---------- 419 (680)
Q Consensus 352 ~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~---------- 419 (680)
.+...|.+.|++++|...|+++....| +...|..+...|...|++++|...|++..+. .|+.. .+.
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHH
Confidence 777888888888888888877754433 5667777777788888888888888877773 34432 222
Q ss_pred --HHHHHHHccCCHHHHHHHHHHhhhcCCCcCh----HHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHH
Q 037256 420 --SILSACSHAGLIDEGRKCFADMTKLSVKPEV----KHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACR 493 (680)
Q Consensus 420 --~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~ 493 (680)
.+...+...|++++|...++++.+.. +.+. ..+..+...+.+.|++++|.+.+++
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~------------------ 297 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAIRICSE------------------ 297 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHH------------------
Confidence 22445667777777777777776652 1112 2344566677777777777766654
Q ss_pred HHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 037256 494 IHGEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNK 540 (680)
Q Consensus 494 ~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 540 (680)
++++.|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 298 ---------~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 298 ---------VLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp ---------HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ---------HHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 45568888999999999999999999999999999864
No 15
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=9.6e-18 Score=170.94 Aligned_cols=284 Identities=14% Similarity=0.090 Sum_probs=138.0
Q ss_pred hcCChHHHHHHHhcCCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHH
Q 037256 157 KCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGY 236 (680)
Q Consensus 157 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 236 (680)
+.|++++|.+.++++..|+ +|+.|+.++.+.|++++|++.|.+ .+|..+|..++.++...|++++|..++..
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 6788999999999996654 999999999999999999999975 36778999999999999999999998888
Q ss_pred HHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHH
Q 037256 237 AICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTAL 316 (680)
Q Consensus 237 ~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 316 (680)
.++. .+++.+.+.|+.+|.++|+++++.++++ .|+..+|+.+...|...|++++|..+|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT---------TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence 8774 4557889999999999999999998885 467789999999999999999999999977 3789
Q ss_pred HHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCCh
Q 037256 317 ILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHG 396 (680)
Q Consensus 317 ~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~ 396 (680)
.+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|++
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~ad~l~~lv~~Yek~G~~ 223 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHADELEELINYYQDRGYF 223 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCHhhHHHHHHHHHHCCCH
Confidence 9999999999999999999887 378999999999999999999988777652 3333345688999999999
Q ss_pred HHHHHHHHHHHHcCCCCCH-HHHHHHHHHHH--ccCCHHHHHHHHHHhhhc-CCCc------ChHHHHHHHHHHHhcCCH
Q 037256 397 RKALEFFSQMLEEGVKPDH-ITFTSILSACS--HAGLIDEGRKCFADMTKL-SVKP------EVKHYACMVDMLGRAGCL 466 (680)
Q Consensus 397 ~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~--~~g~~~~a~~~~~~m~~~-~~~p------~~~~~~~li~~~~~~g~~ 466 (680)
++|+.+++.... ..|.. ..|+-+.-+++ +.+++.+.++.|. ++ +++| +..+|.-++-.|...+++
T Consensus 224 eEai~lLe~aL~--le~ah~~~ftel~il~~ky~p~k~~ehl~~~~---~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~ 298 (449)
T 1b89_A 224 EELITMLEAALG--LERAHMGMFTELAILYSKFKPQKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEY 298 (449)
T ss_dssp HHHHHHHHHHTT--STTCCHHHHHHHHHHHHTTCHHHHHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhC--CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HHhcCcHHHHHHHHHHHHHHHHHHHHhhchH
Confidence 999999998875 44443 35665555554 4455555555554 33 6666 467899999999999999
Q ss_pred HHHHHHHHhC
Q 037256 467 YEAFDMIKQM 476 (680)
Q Consensus 467 ~~A~~~~~~m 476 (680)
+.|...+-+-
T Consensus 299 d~A~~tm~~h 308 (449)
T 1b89_A 299 DNAIITMMNH 308 (449)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHhC
Confidence 9998877655
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.78 E-value=2.1e-16 Score=160.59 Aligned_cols=266 Identities=10% Similarity=-0.023 Sum_probs=168.8
Q ss_pred ChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHH
Q 037256 175 DLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVA 254 (680)
Q Consensus 175 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 254 (680)
+...+..+...+...|++++|+++|+++.+.. +.+...+..++..+...|++++|...+..+++.. +.
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~---------- 88 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PS---------- 88 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT----------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cC----------
Confidence 44555566666666666666666666665542 2233334444444455555555555555554432 22
Q ss_pred HHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcC-ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHH
Q 037256 255 MYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNG-QASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRK 333 (680)
Q Consensus 255 ~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 333 (680)
+...|..+...+...| ++++|...|++..+.. +.+...+..+...+...|++++|..
T Consensus 89 ---------------------~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 146 (330)
T 3hym_B 89 ---------------------NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMA 146 (330)
T ss_dssp ---------------------STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHH
T ss_pred ---------------------CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHH
Confidence 3344444444455555 4555555555544432 2223344444455555555555555
Q ss_pred HHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-
Q 037256 334 FHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGV- 411 (680)
Q Consensus 334 i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~- 411 (680)
.+..+.+.. +.+...+..+...|...|++++|.+.|++.....| +...|..+...|...|++++|...+++..+...
T Consensus 147 ~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 225 (330)
T 3hym_B 147 AYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKA 225 (330)
T ss_dssp HHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhh
Confidence 555554443 22345556677788888888888888888755543 567888888888888888888888888876411
Q ss_pred -------CCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256 412 -------KPDHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM 476 (680)
Q Consensus 412 -------~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 476 (680)
+.+..++..+...+...|++++|...+++..+.. +.+...+..+...|.+.|++++|.+.+++.
T Consensus 226 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 296 (330)
T 3hym_B 226 IGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTA 296 (330)
T ss_dssp TSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTT
T ss_pred ccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 2234578888888888999999999998888764 446778888888999999999998888876
No 17
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=1.7e-17 Score=169.10 Aligned_cols=281 Identities=13% Similarity=0.101 Sum_probs=114.0
Q ss_pred CChHHHHHHhhhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHH
Q 037256 56 GEPNTARSLFNSIHNDKSYSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGD 135 (680)
Q Consensus 56 g~~~~A~~~f~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 135 (680)
|++++|.+.+++++.+ .+|..+..++.+.|++++|++.|.+. +|..+|..++.++...|++++|...++.
T Consensus 17 ~~ld~A~~fae~~~~~----~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 17 GNLDRAYEFAERCNEP----AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhCCCh----HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 9999999999999554 48999999999999999999999763 5778999999999999999999998887
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHH
Q 037256 136 IIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIV 215 (680)
Q Consensus 136 ~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 215 (680)
..+. .+++.+.+.|+.+|.++|+++++.++|+. |+..+|+.+...|...|.+++|...|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence 7774 46688899999999999999999988864 67789999999999999999999999976 3677
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhH
Q 037256 216 SVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASE 295 (680)
Q Consensus 216 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~ 295 (680)
.+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|++++
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~eE 225 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFEE 225 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHHH
Confidence 8888888888888888887766 367788888888888888888877666554 344444567778888888888
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHh--hhcchHHHHHHHHHHHHcCCCC------chHHHHHHHHHHHHcCCHHHHH
Q 037256 296 ALLLFDEMQNSDCKPNPVTALILVSACT--YLGSRQLGRKFHGYIINSNMKI------DATLRNAVMDMYAKCGDLDTAE 367 (680)
Q Consensus 296 A~~~~~~m~~~g~~p~~~t~~~ll~a~~--~~g~~~~a~~i~~~~~~~~~~~------~~~~~~~li~~y~k~g~~~~A~ 367 (680)
|+.+++...... +.....|+-+.-+++ +.+.+.+..+.|.. +.++++ +...|..++-.|.+-++++.|.
T Consensus 226 ai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~ 302 (449)
T 1b89_A 226 LITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 302 (449)
T ss_dssp HHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence 888887776443 333333443333333 33444444443331 122222 3455666666666666666665
Q ss_pred HHH
Q 037256 368 NMF 370 (680)
Q Consensus 368 ~~f 370 (680)
...
T Consensus 303 ~tm 305 (449)
T 1b89_A 303 ITM 305 (449)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 18
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.76 E-value=3.5e-16 Score=167.97 Aligned_cols=283 Identities=11% Similarity=0.021 Sum_probs=164.8
Q ss_pred CHHHHHHHHHhcCC--C-ChhHHHHHHHH---HHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHh----hhcchHH
Q 037256 261 NVEKARLVFDMMEK--R-DLISWNSMLTG---YIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACT----YLGSRQL 330 (680)
Q Consensus 261 ~~~~A~~~f~~m~~--~-~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~----~~g~~~~ 330 (680)
++++|...|++..+ | ++..+..+... +...++.++|++.|++..+.. +.+...+..+...+. ..++.+.
T Consensus 153 ~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~ 231 (472)
T 4g1t_A 153 QNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGE 231 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CH
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHH
Confidence 45666666665542 2 33344433333 334456666777776666542 223444444433332 2345666
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCC-HhHHHHHHHHHHh-----------------
Q 037256 331 GRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERN-VSSWNVLIAGYGM----------------- 392 (680)
Q Consensus 331 a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~-~~~~~~li~~~~~----------------- 392 (680)
|.+.++...+.. +.+..++..+...|.+.|++++|...|++.....|+ ..+|..+...|..
T Consensus 232 a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~ 310 (472)
T 4g1t_A 232 GEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKR 310 (472)
T ss_dssp HHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHH
T ss_pred HHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 777776666554 445666677777777777777777777776443443 4455555544432
Q ss_pred --cCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChH--HHHHHHH-HHHhcCCH
Q 037256 393 --HGHGRKALEFFSQMLEEGVKPDH-ITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVK--HYACMVD-MLGRAGCL 466 (680)
Q Consensus 393 --~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~li~-~~~~~g~~ 466 (680)
.+..++|...|++..+ ..|+. .++..+...+...|++++|.+.|++..+....|... .+..+.. .+...|+.
T Consensus 311 ~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (472)
T 4g1t_A 311 KLLELIGHAVAHLKKADE--ANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCE 388 (472)
T ss_dssp HHHHHHHHHHHHHHHHHH--HCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCH
T ss_pred HHHhhHHHHHHHHHHHhh--cCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCH
Confidence 2336778888888887 44544 478888889999999999999999998764333321 2233332 24578999
Q ss_pred HHHHHHHHhC-CCCCCHhHHHHHHHHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 037256 467 YEAFDMIKQM-PLPPNDSVWGALLLACRIHGEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKGLKKP 545 (680)
Q Consensus 467 ~~A~~~~~~m-~~~p~~~~~~~ll~a~~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~ 545 (680)
++|++.+++. .+.|+...+...+.. .+..+++.++.+|+++.++..|+.+|...|++++|++.+++..+.+-..+
T Consensus 389 ~~Ai~~y~kal~i~~~~~~~~~~~~~----l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p 464 (472)
T 4g1t_A 389 DKAIHHFIEGVKINQKSREKEKMKDK----LQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIP 464 (472)
T ss_dssp HHHHHHHHHHHHSCCCCHHHHHHHHH----HHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 9999999876 677776655443333 35566778889999999999999999999999999999999988765544
Q ss_pred CceeEE
Q 037256 546 AAFSVI 551 (680)
Q Consensus 546 ~~~s~~ 551 (680)
...+|+
T Consensus 465 ~a~~~~ 470 (472)
T 4g1t_A 465 SASSWN 470 (472)
T ss_dssp ------
T ss_pred cHhhcC
Confidence 555554
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.75 E-value=1.3e-15 Score=154.67 Aligned_cols=285 Identities=15% Similarity=0.026 Sum_probs=197.1
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHH
Q 037256 141 FLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSV---RDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSV 217 (680)
Q Consensus 141 ~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 217 (680)
.+.+..++..+...+...|++++|.++|+++.. .+...+..++..+.+.|++++|+.+++++.+.. +.+...+..+
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 356777888889999999999999999998753 356678888899999999999999999998863 3456677777
Q ss_pred HHHHhccC-ChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCCh
Q 037256 218 ASAVGQLG-DVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEK---RDLISWNSMLTGYIQNGQA 293 (680)
Q Consensus 218 l~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~ 293 (680)
...+...| ++++|...+..+++.. +.+...+..+...|...|++++|...|++..+ .+...+..+...|...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhH
Confidence 78888888 8888888888887764 33556677777777777777777777776643 2345666677777777777
Q ss_pred hHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhc
Q 037256 294 SEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDI 373 (680)
Q Consensus 294 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~ 373 (680)
++|.+.|++..+.. +.+. .++..+...|.+.|++++|...|++.
T Consensus 176 ~~A~~~~~~al~~~-~~~~-----------------------------------~~~~~l~~~~~~~~~~~~A~~~~~~a 219 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDP-----------------------------------FVMHEVGVVAFQNGEWKTAEKWFLDA 219 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCH-----------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCh-----------------------------------HHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 77777777766542 2233 34444445555555555555555444
Q ss_pred CCC----------CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhh
Q 037256 374 HPS----------ERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKP-DHITFTSILSACSHAGLIDEGRKCFADMT 442 (680)
Q Consensus 374 ~~~----------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 442 (680)
... ..+..+|..+...|...|++++|+..|++..+. .| +...+..+...+...|++++|.+.|+++.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 297 (330)
T 3hym_B 220 LEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL--IPQNASTYSAIGYIHSLMGNFENAVDYFHTAL 297 (330)
T ss_dssp HHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT
T ss_pred HHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 111 223456777777777777888888777777774 34 34567777777777888888888887776
Q ss_pred hcCCCcChHHHHHHHHHH-HhcCCH
Q 037256 443 KLSVKPEVKHYACMVDML-GRAGCL 466 (680)
Q Consensus 443 ~~~~~p~~~~~~~li~~~-~~~g~~ 466 (680)
+.. +.+...+..+..++ ...|+.
T Consensus 298 ~~~-p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 298 GLR-RDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp TTC-SCCHHHHHHHHHHHHTTTTC-
T ss_pred ccC-CCchHHHHHHHHHHHHHhCch
Confidence 543 33555666666666 344443
No 20
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.75 E-value=1.5e-14 Score=156.04 Aligned_cols=350 Identities=11% Similarity=0.023 Sum_probs=229.2
Q ss_pred CcchHHHHHHHHHh----CCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhc----cCChHHHHHHHHHHHHhCCCCch
Q 037256 74 YSFLWNTMIRAYAN----NGHCVETLELYSTMRRSGISSNSYTFPFVLKACAS----NSLILEGKVVHGDIIRTGFLSDS 145 (680)
Q Consensus 74 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~ 145 (680)
+..++..+...|.. .+++++|+..|++..+.| +...+..|-..+.. .++.++|...+....+.| ++
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 55667777777776 778888888888877764 44566666666666 778888888888877765 45
Q ss_pred hHHHHHHHHHHh----cCChHHHHHHHhcCCCC-ChhHHHHHHHHHHh----CCCccHHHHHHHHHHHcCCCCCHhHHHH
Q 037256 146 YVQAALVDMYAK----CGQTDDGCKVFDEMSVR-DLVSWTVMITAYEQ----AEKPEEALILFQKTQQEGLLSDSVTIVS 216 (680)
Q Consensus 146 ~~~~~Li~~~~~----~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 216 (680)
..+..|..+|.. .++.++|.+.|++..+. +..++..|...|.. .+++++|++.|++..+.| +...+..
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~ 188 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQ 188 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 566667777776 67788888887765433 55667777777766 677778888887777654 4555666
Q ss_pred HHHHHhc----cCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhcCC-CChhHHHHHHHHH
Q 037256 217 VASAVGQ----LGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYAR----CGNVEKARLVFDMMEK-RDLISWNSMLTGY 287 (680)
Q Consensus 217 ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~----~g~~~~A~~~f~~m~~-~~~~~~~~li~~~ 287 (680)
+...+.. .++.++|...+....+.| +...+..|..+|.. .++.++|...|++..+ .+..++..+...|
T Consensus 189 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y 265 (490)
T 2xm6_A 189 LGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYIL 265 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6666655 677777777777777654 44556666667765 6777777777776544 3556666666666
Q ss_pred HH----cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhh-----cchHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 037256 288 IQ----NGQASEALLLFDEMQNSDCKPNPVTALILVSACTYL-----GSRQLGRKFHGYIINSNMKIDATLRNAVMDMYA 358 (680)
Q Consensus 288 ~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~ 358 (680)
.. .++.++|+..|++..+.| +...+..+...+... ++.++|...+....+.+ +...+..+..+|.
T Consensus 266 ~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~ 339 (490)
T 2xm6_A 266 EQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYF 339 (490)
T ss_dssp HHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHH
Confidence 66 677777777777776554 333444455555544 66677777776666654 3445555666666
Q ss_pred HcC---CHHHHHHHHhhcCCCCCCHhHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----
Q 037256 359 KCG---DLDTAENMFNDIHPSERNVSSWNVLIAGYGM----HGHGRKALEFFSQMLEEGVKPDHITFTSILSACSH---- 427 (680)
Q Consensus 359 k~g---~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~---- 427 (680)
+.| ++++|.+.|++... ..+...+..|...|.. .+++++|++.|++..+.| +...+..+...|..
T Consensus 340 ~~g~~~~~~~A~~~~~~a~~-~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~ 415 (490)
T 2xm6_A 340 RLGSEEEHKKAVEWFRKAAA-KGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGV 415 (490)
T ss_dssp HSCCHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSS
T ss_pred hCCCcccHHHHHHHHHHHHH-CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCC
Confidence 545 56666666666532 2455666666666666 566677777776666644 34455555555555
Q ss_pred cCCHHHHHHHHHHhhhcC
Q 037256 428 AGLIDEGRKCFADMTKLS 445 (680)
Q Consensus 428 ~g~~~~a~~~~~~m~~~~ 445 (680)
.+++++|...|++..+.+
T Consensus 416 ~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 416 ERDYVQAWAWFDTASTND 433 (490)
T ss_dssp CCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCC
Confidence 566677777776666654
No 21
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.74 E-value=2.4e-13 Score=153.92 Aligned_cols=447 Identities=14% Similarity=0.114 Sum_probs=311.7
Q ss_pred hhhhHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCCCC-----CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCC
Q 037256 34 TSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKS-----YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISS 108 (680)
Q Consensus 34 ~~~~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 108 (680)
++.-.+..+..|.. . |.+.+|.++++++... | +....|.++.+..+. +..+..+..++...
T Consensus 984 ~PeeVs~~vKaf~~-a------glp~EaieLLEKivl~-~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~----- 1049 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMT-A------DLPNELIELLEKIVLD-NSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN----- 1049 (1630)
T ss_pred CHHHhHHHHHHHHh-C------CCHHHHHHHHHHHHcC-CCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-----
Confidence 44444555566665 5 7777777777777632 1 223455566666555 34555555544431
Q ss_pred CcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHh
Q 037256 109 NSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQ 188 (680)
Q Consensus 109 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~ 188 (680)
....-+...|...|.+++|.++|+... ......+.++ -..|++++|.++.++.. +..+|..+..++.+
T Consensus 1050 --~d~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aervn--~p~vWsqLAKAql~ 1117 (1630)
T 1xi4_A 1050 --YDAPDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQ 1117 (1630)
T ss_pred --ccHHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHh
Confidence 123345666778888888888887641 1122223332 26788999999888774 46788899999999
Q ss_pred CCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 037256 189 AEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLV 268 (680)
Q Consensus 189 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~ 268 (680)
.|++++|++.|.+. -|...|..++.+|.+.|+++++.+.+....+.. +++.+.+.++.+|++.+++++...+
T Consensus 1118 ~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f 1189 (1630)
T 1xi4_A 1118 KGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF 1189 (1630)
T ss_pred CCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH
Confidence 99999999999663 467788889999999999999999999888765 4444455699999999999865544
Q ss_pred HHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchH
Q 037256 269 FDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDAT 348 (680)
Q Consensus 269 f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~ 348 (680)
. ..++...|..+...|...|++++|..+|... ..|..+...+.+.|+++.|.+.++.. .+..
T Consensus 1190 I---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~ 1251 (1630)
T 1xi4_A 1190 I---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTR 1251 (1630)
T ss_pred H---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHH
Confidence 3 4556677888899999999999999999885 37889999999999999999998876 4668
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHH--
Q 037256 349 LRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHI-TFTSILSAC-- 425 (680)
Q Consensus 349 ~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~-- 425 (680)
+|..+..++...|++..|......+ ..+...+..++..|...|.+++|+.+++.... +.|... .|+-+...+
T Consensus 1252 aWkev~~acve~~Ef~LA~~cgl~I---iv~~deLeeli~yYe~~G~feEAI~LlE~aL~--LeraH~gmftELaiLyaK 1326 (1630)
T 1xi4_A 1252 TWKEVCFACVDGKEFRLAQMCGLHI---VVHADELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYSK 1326 (1630)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHhh---hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cChhHhHHHHHHHHHHHh
Confidence 8888889999999999998877643 34556677899999999999999999987775 555543 554444444
Q ss_pred HccCCHHHHHHHHHHhhhcCCCc------ChHHHHHHHHHHHhcCCHHHHHHHHHhCC--------------CCCCHhHH
Q 037256 426 SHAGLIDEGRKCFADMTKLSVKP------EVKHYACMVDMLGRAGCLYEAFDMIKQMP--------------LPPNDSVW 485 (680)
Q Consensus 426 ~~~g~~~~a~~~~~~m~~~~~~p------~~~~~~~li~~~~~~g~~~~A~~~~~~m~--------------~~p~~~~~ 485 (680)
.+.+++.++.++|..-. +++| +...|.-++-.|.+.|+++.|...+-+-+ ...|...|
T Consensus 1327 y~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~ely 1404 (1630)
T 1xi4_A 1327 FKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELY 1404 (1630)
T ss_pred CCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHH
Confidence 45556666666666322 4444 56779999999999999999985543331 12244444
Q ss_pred HHHHHHHHHHHHHHHHHHHc-cCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 037256 486 GALLLACRIHGEIAANYLFQ-LEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKG 541 (680)
Q Consensus 486 ~~ll~a~~~~~~~~~~~~~~-l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 541 (680)
.-.+.-|..+....+..++. +.|. --+.....++.+.|.+.-+..+++......
T Consensus 1405 ykai~Fyl~~~P~~lndLl~~l~~r--lD~~R~V~l~~~~~~l~lik~yl~~vq~~n 1459 (1630)
T 1xi4_A 1405 YRAIQFYLEFKPLLLNDLLMVLSPR--LDHTRAVNYFSKVKQLPLVKPYLRSVQNHN 1459 (1630)
T ss_pred HHHHHHHHhhChHHHHHHHHHhhhc--CChHHHHHHHHHcCChHHhHHHHHHHHHhc
Confidence 44444444432223332222 3232 223455667777888877777777766544
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.74 E-value=1.5e-14 Score=157.72 Aligned_cols=409 Identities=9% Similarity=0.017 Sum_probs=225.1
Q ss_pred CCC-CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHH
Q 037256 71 DKS-YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQA 149 (680)
Q Consensus 71 ~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 149 (680)
..| |..+|..++. +.+.|++++|..+|+++.+.. +-+...|...+..+.+.|++++|..+|+.+++.. |+...|.
T Consensus 8 ~~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~ 83 (530)
T 2ooe_A 8 ENPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWK 83 (530)
T ss_dssp HCTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHH
T ss_pred hCCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHH
Confidence 355 6778988888 477899999999999998753 2255678888888888899999999999888764 5666777
Q ss_pred HHHHH-HHhcCChHHHHH----HHhcCC------CCChhHHHHHHHHHHh---------CCCccHHHHHHHHHHHcCCCC
Q 037256 150 ALVDM-YAKCGQTDDGCK----VFDEMS------VRDLVSWTVMITAYEQ---------AEKPEEALILFQKTQQEGLLS 209 (680)
Q Consensus 150 ~Li~~-~~~~g~~~~A~~----~f~~~~------~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p 209 (680)
.++.. ....|+.++|.+ +|+... ..+...|...+....+ .|++++|..+|++.++. |
T Consensus 84 ~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P 160 (530)
T 2ooe_A 84 CYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---P 160 (530)
T ss_dssp HHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---C
T ss_pred HHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---h
Confidence 66643 335677776655 555431 1345667776665544 56677777777777662 2
Q ss_pred CH---hHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHh-------cC------
Q 037256 210 DS---VTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDM-------ME------ 273 (680)
Q Consensus 210 ~~---~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~-------m~------ 273 (680)
+. ..|..........+. . +...++. .+.++++.|..++.. +.
T Consensus 161 ~~~~~~~~~~~~~~e~~~~~-~-------------------~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~ 218 (530)
T 2ooe_A 161 MINIEQLWRDYNKYEEGINI-H-------------------LAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSV 218 (530)
T ss_dssp CTTHHHHHHHHHHHHHHHCH-H-------------------HHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred hhhHHHHHHHHHHHHHhhch-h-------------------HHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccC
Confidence 21 122111110000000 0 0011110 012334445444433 11
Q ss_pred CCC--------hhHHHHHHHHHHHc----CCh----hHHHHHHHHHHhCCCCCCHhhHHHHHHHHhh-------hcchH-
Q 037256 274 KRD--------LISWNSMLTGYIQN----GQA----SEALLLFDEMQNSDCKPNPVTALILVSACTY-------LGSRQ- 329 (680)
Q Consensus 274 ~~~--------~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-------~g~~~- 329 (680)
.|+ ...|...+.....+ ++. .+|..+|++..... +-+...|......+.+ .|+++
T Consensus 219 ~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~ 297 (530)
T 2ooe_A 219 PPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNN 297 (530)
T ss_dssp CCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHH
T ss_pred CCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhh
Confidence 011 23444444322221 121 25555666655431 2234444444444433 45554
Q ss_pred ------HHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCC-H-hHHHHHHHHHHhcCChHHHHH
Q 037256 330 ------LGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERN-V-SSWNVLIAGYGMHGHGRKALE 401 (680)
Q Consensus 330 ------~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~-~-~~~~~li~~~~~~g~~~~A~~ 401 (680)
.|..+++..++.-.+.+..++..++..+.+.|++++|..+|+++....|+ . ..|..++..+.+.|+.++|.+
T Consensus 298 a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~ 377 (530)
T 2ooe_A 298 AKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRM 377 (530)
T ss_dssp HHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHH
Confidence 56666666554222344566666666666666666666666665433343 2 356666666666666666666
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHH-HHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 037256 402 FFSQMLEEGVKPD-HITFTSILSA-CSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLP 479 (680)
Q Consensus 402 l~~~m~~~g~~p~-~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 479 (680)
+|++..+. .|+ ...|...... +...|++++|..+|+...+.. +.+...|..+++.+.+.|+.++|..+|++.
T Consensus 378 ~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~a--- 451 (530)
T 2ooe_A 378 IFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERV--- 451 (530)
T ss_dssp HHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHH---
T ss_pred HHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHH---
Confidence 66666552 232 1222221111 224566666666666655542 223555666666666666666666666543
Q ss_pred CCHhHHHHHHHHHHHHHHHHHHHHHccCCCCCc----hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 037256 480 PNDSVWGALLLACRIHGEIAANYLFQLEPEHTG----YFVLMSNIYAASNKWREVGKLREDMKN 539 (680)
Q Consensus 480 p~~~~~~~ll~a~~~~~~~~~~~~~~l~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~ 539 (680)
++..|.++. .+...+......|+.+.+.++.+++.+
T Consensus 452 ------------------------l~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 452 ------------------------LTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp ------------------------HHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred ------------------------HhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344443333 555556667778888888888888765
No 23
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.73 E-value=7.3e-15 Score=160.14 Aligned_cols=401 Identities=11% Similarity=0.073 Sum_probs=245.1
Q ss_pred hhhhHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCCCC-CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCccc
Q 037256 34 TSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKS-YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYT 112 (680)
Q Consensus 34 ~~~~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 112 (680)
++.+|..++. +.+ . |++++|+.+|+.+....| +...|...+..+.+.|++++|..+|+++... .|+...
T Consensus 12 ~~~~w~~l~~-~~~-~------~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~l 81 (530)
T 2ooe_A 12 DLDAWSILIR-EAQ-N------QPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDL 81 (530)
T ss_dssp CHHHHHHHHH-HHH-S------SCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHH
T ss_pred CHHHHHHHHH-HHH-h------CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHH
Confidence 5667777776 766 6 999999999999999988 5668999999999999999999999999876 367666
Q ss_pred HHHHHHHH-hccCChHHHHH----HHHHHHHh-CCCC-chhHHHHHHHHHHh---------cCChHHHHHHHhcCCC-CC
Q 037256 113 FPFVLKAC-ASNSLILEGKV----VHGDIIRT-GFLS-DSYVQAALVDMYAK---------CGQTDDGCKVFDEMSV-RD 175 (680)
Q Consensus 113 ~~~ll~~~-~~~~~~~~a~~----~~~~~~~~-g~~~-~~~~~~~Li~~~~~---------~g~~~~A~~~f~~~~~-~~ 175 (680)
|...+... ...|+.+.|++ +|+..++. |..| +...|...+....+ .|+++.|.++|++... |+
T Consensus 82 w~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~ 161 (530)
T 2ooe_A 82 WKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPM 161 (530)
T ss_dssp HHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchh
Confidence 76666533 34567766655 77777654 5444 46778888877655 7899999999998654 22
Q ss_pred h---hHHHHHHHHHH-------------hCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHH
Q 037256 176 L---VSWTVMITAYE-------------QAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAIC 239 (680)
Q Consensus 176 ~---~~~~~li~~~~-------------~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 239 (680)
. ..|........ +.+++.+|..++.++... ....+
T Consensus 162 ~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~-----------------------------~~~l~ 212 (530)
T 2ooe_A 162 INIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETV-----------------------------MKGLD 212 (530)
T ss_dssp TTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHH-----------------------------HHHCC
T ss_pred hhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHH-----------------------------HHHhc
Confidence 1 23333222110 112233333333331100 00001
Q ss_pred cc---CCCC--------hhHHHHHHHHHHhc----CCH----HHHHHHHHhcCC---CChhHHHHHHHHHHH-------c
Q 037256 240 NA---FLED--------LCIQNSIVAMYARC----GNV----EKARLVFDMMEK---RDLISWNSMLTGYIQ-------N 290 (680)
Q Consensus 240 ~g---~~~~--------~~~~~~Li~~y~~~----g~~----~~A~~~f~~m~~---~~~~~~~~li~~~~~-------~ 290 (680)
.. ++|+ ...|...+..-... ++. +.|..+|++... .++..|...+..+.+ .
T Consensus 213 ~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~ 292 (530)
T 2ooe_A 213 RNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEK 292 (530)
T ss_dssp SSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhc
Confidence 00 1111 12222222221111 111 244445554432 245566666655554 4
Q ss_pred CChh-------HHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCc-hHHHHHHHHHHHHcCC
Q 037256 291 GQAS-------EALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKID-ATLRNAVMDMYAKCGD 362 (680)
Q Consensus 291 g~~~-------~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~-~~~~~~li~~y~k~g~ 362 (680)
|+++ +|..+|++..+.-.+-+...+..+...+...|+++.|..+++.+++.. +.+ ..+|..++..+.+.|+
T Consensus 293 g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~ 371 (530)
T 2ooe_A 293 GDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEG 371 (530)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcC
Confidence 6655 666666666642112235555666666666677777777777766643 112 2467777777777777
Q ss_pred HHHHHHHHhhcCCCCCC-HhHHHHHHH-HHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHH
Q 037256 363 LDTAENMFNDIHPSERN-VSSWNVLIA-GYGMHGHGRKALEFFSQMLEEGVKPD-HITFTSILSACSHAGLIDEGRKCFA 439 (680)
Q Consensus 363 ~~~A~~~f~~~~~~~~~-~~~~~~li~-~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~ 439 (680)
+++|.++|++.....|+ ...|...+. .+...|+.++|..+|++..+. .|+ ...|..++....+.|+.++|..+|+
T Consensus 372 ~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~ 449 (530)
T 2ooe_A 372 IKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFE 449 (530)
T ss_dssp HHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHH
Confidence 78888887777444332 222222111 233578888888888887773 454 4577777777778888888888888
Q ss_pred Hhhhc-CCCcC--hHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256 440 DMTKL-SVKPE--VKHYACMVDMLGRAGCLYEAFDMIKQM 476 (680)
Q Consensus 440 ~m~~~-~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m 476 (680)
+.... ...|+ ...|...+....+.|+.+.+.++.+++
T Consensus 450 ~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 450 RVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88775 23332 446777777777788888887777665
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.73 E-value=3.2e-16 Score=162.12 Aligned_cols=281 Identities=11% Similarity=0.033 Sum_probs=189.4
Q ss_pred hcCChHHHHH-HHhcCCC---C----ChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChH
Q 037256 157 KCGQTDDGCK-VFDEMSV---R----DLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVL 228 (680)
Q Consensus 157 ~~g~~~~A~~-~f~~~~~---~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 228 (680)
..|++++|.. .|++... . +...|..+...+.+.|++++|+..|+++.+..
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---------------------- 94 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD---------------------- 94 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC----------------------
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----------------------
Confidence 3456666665 5554321 1 23445566666666666666666666665542
Q ss_pred HHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 037256 229 KAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEK---RDLISWNSMLTGYIQNGQASEALLLFDEMQN 305 (680)
Q Consensus 229 ~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 305 (680)
+.+..++..+..+|.+.|++++|.+.|+++.+ .+..+|..+...|...|++++|++.|+++.+
T Consensus 95 --------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 160 (368)
T 1fch_A 95 --------------PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLR 160 (368)
T ss_dssp --------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22333444455555555555555555554432 3455666666666666666666666666665
Q ss_pred CCCCCCHhhHHH---------------HHHHHhhhcchHHHHHHHHHHHHcCCCC-chHHHHHHHHHHHHcCCHHHHHHH
Q 037256 306 SDCKPNPVTALI---------------LVSACTYLGSRQLGRKFHGYIINSNMKI-DATLRNAVMDMYAKCGDLDTAENM 369 (680)
Q Consensus 306 ~g~~p~~~t~~~---------------ll~a~~~~g~~~~a~~i~~~~~~~~~~~-~~~~~~~li~~y~k~g~~~~A~~~ 369 (680)
.... +...+.. .+..+...|++++|...+..+.+..... +..++..+...|.+.|++++|...
T Consensus 161 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~ 239 (368)
T 1fch_A 161 YTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDC 239 (368)
T ss_dssp TSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4311 1111110 2333448899999999999988875332 688899999999999999999999
Q ss_pred HhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhcC--
Q 037256 370 FNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPD-HITFTSILSACSHAGLIDEGRKCFADMTKLS-- 445 (680)
Q Consensus 370 f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-- 445 (680)
|+++....| +..+|..+...|...|++++|+..|+++.+. .|+ ..++..+..++...|++++|...|+++.+..
T Consensus 240 ~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 317 (368)
T 1fch_A 240 FTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRK 317 (368)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 998854444 5788999999999999999999999999984 454 5688889999999999999999999988752
Q ss_pred C-C-------cChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256 446 V-K-------PEVKHYACMVDMLGRAGCLYEAFDMIKQM 476 (680)
Q Consensus 446 ~-~-------p~~~~~~~li~~~~~~g~~~~A~~~~~~m 476 (680)
. . .....|..+..+|.+.|+.++|..++++.
T Consensus 318 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 318 SRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp C------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred CCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 1 1 12678999999999999999999988743
No 25
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.73 E-value=1.3e-13 Score=155.93 Aligned_cols=374 Identities=13% Similarity=0.108 Sum_probs=281.6
Q ss_pred cHHHHHHHHhccCChHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHhC
Q 037256 112 TFPFVLKACASNSLILEGKVVHGDIIRTG--FLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQA 189 (680)
Q Consensus 112 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~ 189 (680)
--...++++...|...++.++++.++-.+ +..+....+.|+.+..+. +..+..+..++...-+ ...+...+...
T Consensus 987 eVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~l 1062 (1630)
T 1xi4_A 987 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISN 1062 (1630)
T ss_pred HhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhC
Confidence 34667788889999999999999888332 123456667777777666 5566666655554323 44577888899
Q ss_pred CCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 037256 190 EKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVF 269 (680)
Q Consensus 190 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f 269 (680)
|.+++|..+|++.. -.......++. ..+++++|.++.+.+ .+..+|..+..++.+.|++++|.+.|
T Consensus 1063 glyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsY 1128 (1630)
T 1xi4_A 1063 ELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSY 1128 (1630)
T ss_pred CCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 99999999999852 11222233322 667888888887754 45788899999999999999999999
Q ss_pred HhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHH
Q 037256 270 DMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATL 349 (680)
Q Consensus 270 ~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~ 349 (680)
.+. .|...|..++..+.+.|++++|++.|...++.. +++...+.+..+|++.++++....+. + .++...
T Consensus 1129 iKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad 1197 (1630)
T 1xi4_A 1129 IKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAH 1197 (1630)
T ss_pred Hhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHH
Confidence 764 678888899999999999999999998877654 33333445888899998888644442 1 345566
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 037256 350 RNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAG 429 (680)
Q Consensus 350 ~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 429 (680)
+..+.+.|...|++++|...|... ..|..+...|.+.|++++|.+.+++. -+..+|..+-.+|...|
T Consensus 1198 ~~~iGd~le~eg~YeeA~~~Y~kA-------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~ 1264 (1630)
T 1xi4_A 1198 IQQVGDRCYDEKMYDAAKLLYNNV-------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGK 1264 (1630)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhh-------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhh
Confidence 777999999999999999999986 48999999999999999999999876 35688999999999999
Q ss_pred CHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHh-HHHHHHHHHHHH-------HHHHH
Q 037256 430 LIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM-PLPPNDS-VWGALLLACRIH-------GEIAA 500 (680)
Q Consensus 430 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~a~~~~-------~~~~~ 500 (680)
++..|...... +..+...+..++..|.+.|.+++|+.+++.. ++.|... .|.-|...+.+. ..+.+
T Consensus 1265 Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f 1339 (1630)
T 1xi4_A 1265 EFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELF 1339 (1630)
T ss_pred HHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99998887653 3456777889999999999999999999775 6655443 454444555544 22223
Q ss_pred HHHHccCC-----CCCchHHHHHHHHHhcCChhHHHH
Q 037256 501 NYLFQLEP-----EHTGYFVLMSNIYAASNKWREVGK 532 (680)
Q Consensus 501 ~~~~~l~p-----~~~~~~~~l~~~~~~~g~~~~A~~ 532 (680)
..-..+.| .+...+.-++-+|.+.|+|+.|..
T Consensus 1340 ~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1340 WSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 33333444 566778899999999999999985
No 26
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.72 E-value=9e-14 Score=149.90 Aligned_cols=358 Identities=11% Similarity=0.051 Sum_probs=282.6
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHhc----cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCChHHHH
Q 037256 94 TLELYSTMRRSGISSNSYTFPFVLKACAS----NSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAK----CGQTDDGC 165 (680)
Q Consensus 94 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~----~g~~~~A~ 165 (680)
+++.+++..+.| +...+..+-..+.. .+++++|...+....+.| ++..+..|...|.. .++.++|.
T Consensus 26 ~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 26 NLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp CHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 455565555543 55666666666666 789999999999998875 56677888888888 89999999
Q ss_pred HHHhcCCC-CChhHHHHHHHHHHh----CCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc----cCChHHHHHHHHH
Q 037256 166 KVFDEMSV-RDLVSWTVMITAYEQ----AEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQ----LGDVLKAQAVHGY 236 (680)
Q Consensus 166 ~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~ 236 (680)
+.|++..+ .+..++..|...|.. .+++++|++.|++..+.| +...+..+...+.. .++.++|.+.+..
T Consensus 100 ~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 176 (490)
T 2xm6_A 100 IWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSK 176 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 99988754 367788888888888 789999999999988875 45666667666765 7899999999999
Q ss_pred HHHccCCCChhHHHHHHHHHHh----cCCHHHHHHHHHhcCC-CChhHHHHHHHHHHH----cCChhHHHHHHHHHHhCC
Q 037256 237 AICNAFLEDLCIQNSIVAMYAR----CGNVEKARLVFDMMEK-RDLISWNSMLTGYIQ----NGQASEALLLFDEMQNSD 307 (680)
Q Consensus 237 ~~~~g~~~~~~~~~~Li~~y~~----~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 307 (680)
..+.| +...+..|..+|.. .++.++|.+.|++..+ .+..++..+...|.. .+++++|..+|++..+.|
T Consensus 177 a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~ 253 (490)
T 2xm6_A 177 AAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG 253 (490)
T ss_dssp HHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT
T ss_pred HHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 88875 67788888888888 8999999999988754 467778888888886 789999999999988765
Q ss_pred CCCCHhhHHHHHHHHhh----hcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHc-----CCHHHHHHHHhhcCCCCC
Q 037256 308 CKPNPVTALILVSACTY----LGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKC-----GDLDTAENMFNDIHPSER 378 (680)
Q Consensus 308 ~~p~~~t~~~ll~a~~~----~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~-----g~~~~A~~~f~~~~~~~~ 378 (680)
+...+..+...+.. .++.++|...++...+.| +...+..|..+|... +++++|...|++... ..
T Consensus 254 ---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~-~~ 326 (490)
T 2xm6_A 254 ---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE-QG 326 (490)
T ss_dssp ---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHH-TT
T ss_pred ---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh-cC
Confidence 44455566666665 788999999999888765 456777788888887 899999999988733 34
Q ss_pred CHhHHHHHHHHHHhcC---ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHhhhcCCCcChH
Q 037256 379 NVSSWNVLIAGYGMHG---HGRKALEFFSQMLEEGVKPDHITFTSILSACSH----AGLIDEGRKCFADMTKLSVKPEVK 451 (680)
Q Consensus 379 ~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~p~~~ 451 (680)
+...+..+...|...| +.++|++.|++..+.| +...+..+...|.. .+++++|.+.|++..+.+ +..
T Consensus 327 ~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~ 400 (490)
T 2xm6_A 327 DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSA 400 (490)
T ss_dssp CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHH
Confidence 5677788888887766 7889999999988864 56677777777777 789999999999988765 466
Q ss_pred HHHHHHHHHHh----cCCHHHHHHHHHhC
Q 037256 452 HYACMVDMLGR----AGCLYEAFDMIKQM 476 (680)
Q Consensus 452 ~~~~li~~~~~----~g~~~~A~~~~~~m 476 (680)
.+..|..+|.+ .+++++|.+.|++.
T Consensus 401 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 429 (490)
T 2xm6_A 401 AQVQLGEIYYYGLGVERDYVQAWAWFDTA 429 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 77778888887 78999999888875
No 27
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.72 E-value=5.5e-16 Score=160.38 Aligned_cols=278 Identities=10% Similarity=0.012 Sum_probs=150.5
Q ss_pred CCCchHHHH-HHHHHHhCCC---CCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHH
Q 037256 88 NGHCVETLE-LYSTMRRSGI---SSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDD 163 (680)
Q Consensus 88 ~g~~~~A~~-~~~~m~~~g~---~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~ 163 (680)
.|++++|++ .|++...... ..+...+..+...+...|++++|...++.+++.. +.+..++..+...|.+.|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 466777777 6665543221 1134556677777777778888888877777764 4456677777777778888888
Q ss_pred HHHHHhcCC---CCChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHh-HHHH---------------HHHHHhcc
Q 037256 164 GCKVFDEMS---VRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSV-TIVS---------------VASAVGQL 224 (680)
Q Consensus 164 A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~---------------ll~~~~~~ 224 (680)
|...|+++. ..+..+|..+...|...|++++|++.|+++.... |+.. .+.. .+..+...
T Consensus 117 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 117 AISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 887777653 3366677888888888888888888888877653 2221 1111 11122244
Q ss_pred CChHHHHHHHHHHHHccCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChhHHHHHH
Q 037256 225 GDVLKAQAVHGYAICNAFLE-DLCIQNSIVAMYARCGNVEKARLVFDMMEK---RDLISWNSMLTGYIQNGQASEALLLF 300 (680)
Q Consensus 225 ~~~~~a~~~~~~~~~~g~~~-~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 300 (680)
|++++|...+..+++..... +..++..+...|.+.|++++|...|+++.+ .+..+|..+...+.+.|++++|+..|
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 274 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAY 274 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55555555555554443211 344444455555555555555555544331 23344444555555555555555555
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC--
Q 037256 301 DEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-- 378 (680)
Q Consensus 301 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-- 378 (680)
+++. +.. +.+..++..+..+|.+.|++++|...|+++....|
T Consensus 275 ~~al-----------------------------------~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 275 RRAL-----------------------------------ELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS 318 (368)
T ss_dssp HHHH-----------------------------------HHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred HHHH-----------------------------------HhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 5444 332 23344455555555555555555555554422111
Q ss_pred ----------CHhHHHHHHHHHHhcCChHHHHHHHH
Q 037256 379 ----------NVSSWNVLIAGYGMHGHGRKALEFFS 404 (680)
Q Consensus 379 ----------~~~~~~~li~~~~~~g~~~~A~~l~~ 404 (680)
...+|..+..+|...|+.++|..+++
T Consensus 319 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 319 RGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp ------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred CCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 14556666666666666666655554
No 28
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.69 E-value=2.5e-17 Score=180.55 Aligned_cols=130 Identities=14% Similarity=0.217 Sum_probs=112.6
Q ss_pred CCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCC-----CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 037256 343 MKIDATLRNAVMDMYAKCGDLDTAENMFNDIHP-----SERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHIT 417 (680)
Q Consensus 343 ~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 417 (680)
...-..+||+||++|+++|++++|.++|++|.. ..||++|||+||.+|++.|+.++|.++|++|.+.|+.||.+|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 344567899999999999999999999977632 378999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCC-HHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHH
Q 037256 418 FTSILSACSHAGL-IDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDM 472 (680)
Q Consensus 418 ~~~ll~a~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 472 (680)
|+++|.++++.|+ .++|.++|++|.+.|+.||..+|++++....|.+-++...++
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHh
Confidence 9999999999997 578999999999999999999999999888776555544444
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.69 E-value=3.9e-15 Score=153.90 Aligned_cols=262 Identities=13% Similarity=0.074 Sum_probs=186.8
Q ss_pred ChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHH
Q 037256 175 DLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVA 254 (680)
Q Consensus 175 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 254 (680)
+...|..+...+.+.|++++|++.|+++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~------------------------------------p~~~~~~~~lg~ 107 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD------------------------------------PGDAEAWQFLGI 107 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC------------------------------------TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------------------------------------cCCHHHHHHHHH
Confidence 44456666667777777777777777666542 223444555556
Q ss_pred HHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC-----------HhhHHHHHH
Q 037256 255 MYARCGNVEKARLVFDMMEK---RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPN-----------PVTALILVS 320 (680)
Q Consensus 255 ~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----------~~t~~~ll~ 320 (680)
+|.+.|++++|...|+++.+ .+..+|..+...|...|++++|+..|+++.+. .|+ ...+..+..
T Consensus 108 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~ 185 (365)
T 4eqf_A 108 TQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSK 185 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHCC----------------
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHH
Confidence 66666666666666665542 34566777777777777777777777777653 222 122334466
Q ss_pred HHhhhcchHHHHHHHHHHHHcCCC-CchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHH
Q 037256 321 ACTYLGSRQLGRKFHGYIINSNMK-IDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRK 398 (680)
Q Consensus 321 a~~~~g~~~~a~~i~~~~~~~~~~-~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~ 398 (680)
.+...|++++|...++.+.+.... .+..++..+...|.+.|++++|.+.|+++....| +..+|+.+...|...|++++
T Consensus 186 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 265 (365)
T 4eqf_A 186 SPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEE 265 (365)
T ss_dssp ---CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 778888899999999888877532 2688889999999999999999999998754444 57889999999999999999
Q ss_pred HHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhc--CC-C--------cChHHHHHHHHHHHhcCCH
Q 037256 399 ALEFFSQMLEEGVKPD-HITFTSILSACSHAGLIDEGRKCFADMTKL--SV-K--------PEVKHYACMVDMLGRAGCL 466 (680)
Q Consensus 399 A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~--~~-~--------p~~~~~~~li~~~~~~g~~ 466 (680)
|+..|+++.+. .|+ ..++..+..+|...|++++|...|+++.+. .. . .+...|..+..++...|+.
T Consensus 266 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 343 (365)
T 4eqf_A 266 AVEAYTRALEI--QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQP 343 (365)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcH
Confidence 99999999984 565 568888999999999999999999998875 11 1 1367889999999999999
Q ss_pred HHHHHHHHhC
Q 037256 467 YEAFDMIKQM 476 (680)
Q Consensus 467 ~~A~~~~~~m 476 (680)
+.|.+..++-
T Consensus 344 ~~a~~~~~~~ 353 (365)
T 4eqf_A 344 ELFQAANLGD 353 (365)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHHhh
Confidence 9999888764
No 30
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.68 E-value=1.4e-15 Score=157.34 Aligned_cols=271 Identities=11% Similarity=-0.031 Sum_probs=193.5
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 037256 144 DSYVQAALVDMYAKCGQTDDGCKVFDEMS---VRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASA 220 (680)
Q Consensus 144 ~~~~~~~Li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 220 (680)
+...+..+...+.+.|++++|...|+++. ..+..+|..+...|.+.|++++|++.|+++.+.. +.+..++..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 34558888999999999999999999875 3477899999999999999999999999998763 3346667777777
Q ss_pred HhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHH
Q 037256 221 VGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLF 300 (680)
Q Consensus 221 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~ 300 (680)
+...|++++|...+..+++.... +...+..+. .....+..+...+.+.|++++|+..|
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~---------------------~~~~~~~~l~~~~~~~g~~~~A~~~~ 200 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPK-YKYLVKNKK---------------------GSPGLTRRMSKSPVDSSVLEGVKELY 200 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHH-HHCC----------------------------------------CCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCcc-chHHHhhhc---------------------cchHHHHHHHHHHhhhhhHHHHHHHH
Confidence 77777777777777776664311 111111110 01223344556666777777777777
Q ss_pred HHHHhCCCC-CCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-
Q 037256 301 DEMQNSDCK-PNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER- 378 (680)
Q Consensus 301 ~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~- 378 (680)
+++.+.... ++..++..+...+...|++++|...++.+.+.. +.+..+++.+..+|.+.|++++|.+.|+++....|
T Consensus 201 ~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 279 (365)
T 4eqf_A 201 LEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG 279 (365)
T ss_dssp HHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 777665311 146667777777777777777777777777654 45677888889999999999999999988754445
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-------------HHHHHHHHHHHHccCCHHHHHHHHHH
Q 037256 379 NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPD-------------HITFTSILSACSHAGLIDEGRKCFAD 440 (680)
Q Consensus 379 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-------------~~t~~~ll~a~~~~g~~~~a~~~~~~ 440 (680)
+..+|..+...|...|++++|...|+++.+. .|+ ...|..+..++...|+.+.+..+..+
T Consensus 280 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 280 FIRSRYNLGISCINLGAYREAVSNFLTALSL--QRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--HHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 4778999999999999999999999998873 332 46788888999999999988887765
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.67 E-value=3.4e-14 Score=141.48 Aligned_cols=248 Identities=10% Similarity=0.031 Sum_probs=195.3
Q ss_pred HHHhcCCHHHHHHHHHhcCCCCh----hHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHH
Q 037256 255 MYARCGNVEKARLVFDMMEKRDL----ISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQL 330 (680)
Q Consensus 255 ~y~~~g~~~~A~~~f~~m~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 330 (680)
-....|+++.|...++.....++ .....+..+|...|++++|+..++. . -+|+..++..+...+...++.+.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHH
Confidence 34567888888888887765432 2445567888899999888876654 1 35677788888888888888999
Q ss_pred HHHHHHHHHHcCC-CCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 037256 331 GRKFHGYIINSNM-KIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEE 409 (680)
Q Consensus 331 a~~i~~~~~~~~~-~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 409 (680)
|.+.++.+...+. +.+...+..+..+|.+.|++++|.+.|++ ..+...+..++..|.+.|+.++|.+.|+++.+.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 159 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ 159 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 9999988887764 44667777888999999999999999988 467788999999999999999999999999985
Q ss_pred CCCCCHHHH---HHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHH
Q 037256 410 GVKPDHITF---TSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWG 486 (680)
Q Consensus 410 g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~ 486 (680)
.|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|++.+++.
T Consensus 160 --~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~a---------- 226 (291)
T 3mkr_A 160 --DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEA---------- 226 (291)
T ss_dssp --CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH----------
T ss_pred --CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH----------
Confidence 5765321 12233444568999999999999987 3678889999999999999999999888764
Q ss_pred HHHHHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChhH-HHHHHHHHHhC
Q 037256 487 ALLLACRIHGEIAANYLFQLEPEHTGYFVLMSNIYAASNKWRE-VGKLREDMKNK 540 (680)
Q Consensus 487 ~ll~a~~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~ 540 (680)
++++|+++.++..++.++...|++++ +.++++++.+.
T Consensus 227 -----------------l~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 227 -----------------LDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp -----------------HHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred -----------------HHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 45678888888888888888888876 46777777653
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.66 E-value=2.3e-14 Score=145.23 Aligned_cols=264 Identities=13% Similarity=0.022 Sum_probs=186.9
Q ss_pred ChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHH
Q 037256 175 DLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVA 254 (680)
Q Consensus 175 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 254 (680)
+...|..+...+.+.|++++|+.+|+++.+.. +.+...+..+...+...|++++|...+..+++.. +
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~----------- 86 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-P----------- 86 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T-----------
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-c-----------
Confidence 33455666667777777777777777766542 2233344444444444444444444444444332 1
Q ss_pred HHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH-hhHHHH--------------H
Q 037256 255 MYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNP-VTALIL--------------V 319 (680)
Q Consensus 255 ~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~l--------------l 319 (680)
.+..+|..+...|...|++++|++.|+++.+.. |+. ..+..+ .
T Consensus 87 --------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (327)
T 3cv0_A 87 --------------------KDIAVHAALAVSHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSE 144 (327)
T ss_dssp --------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTTTC-------------------
T ss_pred --------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHH
Confidence 244555566666666666666666666665542 221 112111 2
Q ss_pred H-HHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChH
Q 037256 320 S-ACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGR 397 (680)
Q Consensus 320 ~-a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~ 397 (680)
. .+...|++++|...+..+.+.. +.+..++..+...|.+.|++++|.+.|+++....| +..+|..+...|...|+++
T Consensus 145 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 223 (327)
T 3cv0_A 145 DFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQ 223 (327)
T ss_dssp -CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Confidence 2 3778889999999999988876 44788899999999999999999999998854444 5788999999999999999
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCc-----------ChHHHHHHHHHHHhcCC
Q 037256 398 KALEFFSQMLEEGVKP-DHITFTSILSACSHAGLIDEGRKCFADMTKLSVKP-----------EVKHYACMVDMLGRAGC 465 (680)
Q Consensus 398 ~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p-----------~~~~~~~li~~~~~~g~ 465 (680)
+|++.|+++.+. .| +..++..+...+...|++++|.+.++++.+..... +...|..+..++.+.|+
T Consensus 224 ~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 301 (327)
T 3cv0_A 224 EALDAYNRALDI--NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNR 301 (327)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCC
Confidence 999999999884 44 45688889999999999999999999988763121 47788999999999999
Q ss_pred HHHHHHHHHhC
Q 037256 466 LYEAFDMIKQM 476 (680)
Q Consensus 466 ~~~A~~~~~~m 476 (680)
+++|..++++.
T Consensus 302 ~~~A~~~~~~~ 312 (327)
T 3cv0_A 302 PDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHHHHH
Confidence 99999999865
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.65 E-value=1e-13 Score=148.57 Aligned_cols=372 Identities=9% Similarity=-0.030 Sum_probs=193.5
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHhC-----C--CCC-CcccHHHHHHHHhccCChHHHHHHHHHHHHhC-----
Q 037256 74 YSFLWNTMIRAYANNGHCVETLELYSTMRRS-----G--ISS-NSYTFPFVLKACASNSLILEGKVVHGDIIRTG----- 140 (680)
Q Consensus 74 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g--~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g----- 140 (680)
....||.|...+...|++++|++.|++..+. + ..| ...+|..+..++...|++++|...++.+++..
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3556888888888899999999998876541 1 122 23567777778888888888888887776531
Q ss_pred -C-CCchhHHHHHHHHHHhc--CChHHHHHHHhcCC--CC-ChhHHHHHHHH---HHhCCCccHHHHHHHHHHHcCCCCC
Q 037256 141 -F-LSDSYVQAALVDMYAKC--GQTDDGCKVFDEMS--VR-DLVSWTVMITA---YEQAEKPEEALILFQKTQQEGLLSD 210 (680)
Q Consensus 141 -~-~~~~~~~~~Li~~~~~~--g~~~~A~~~f~~~~--~~-~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~p~ 210 (680)
. .....+++.+..++.+. +++++|...|++.. .| +...+..+... +...++.++|++.|++..+.. +.+
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 0 11234455444444443 35677777777654 22 34444444433 334566677777777766543 223
Q ss_pred HhHHHHHHHHHh----ccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHH
Q 037256 211 SVTIVSVASAVG----QLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEK---RDLISWNSM 283 (680)
Q Consensus 211 ~~t~~~ll~~~~----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~l 283 (680)
...+..+...+. ..++.++|.+.+....+.. +.+..++..+...|.+.|++++|...|++..+ .+..+|..+
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 287 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHH
Confidence 333433333332 2344556666666655543 33444555566666666666666666655432 233444444
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCH
Q 037256 284 LTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDL 363 (680)
Q Consensus 284 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~ 363 (680)
...|...+....+ .. . ..........+..+.|...+....+.. +.+...+..+..+|.+.|++
T Consensus 288 g~~y~~~~~~~~~---------~~-~------~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~ 350 (472)
T 4g1t_A 288 GCCYRAKVFQVMN---------LR-E------NGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQY 350 (472)
T ss_dssp HHHHHHHHHHHHH---------C-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhh---------HH-H------HHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccH
Confidence 4443221110000 00 0 000000111223455666666665544 33455566677777777777
Q ss_pred HHHHHHHhhcCCCCCCHhH----HHHHHH-HHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 037256 364 DTAENMFNDIHPSERNVSS----WNVLIA-GYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCF 438 (680)
Q Consensus 364 ~~A~~~f~~~~~~~~~~~~----~~~li~-~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 438 (680)
++|.+.|++.....++... +..+.. .+.+.|+.++|+..|++..+ +.|+....... ...+.+++
T Consensus 351 ~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~~~---------~~~l~~~~ 419 (472)
T 4g1t_A 351 EEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKEKM---------KDKLQKIA 419 (472)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHHHH---------HHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHHHH---------HHHHHHHH
Confidence 7777777766443443322 222222 23456777777777777776 55654332222 22333444
Q ss_pred HHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256 439 ADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM 476 (680)
Q Consensus 439 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 476 (680)
+...+.. +.+...|..+...|...|++++|++.|++.
T Consensus 420 ~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kA 456 (472)
T 4g1t_A 420 KMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERG 456 (472)
T ss_dssp HHHHHHC-C-CTTHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444332 445666777777777777777777777665
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.65 E-value=8.2e-14 Score=138.70 Aligned_cols=250 Identities=11% Similarity=0.012 Sum_probs=169.6
Q ss_pred HhcCChHHHHHHHhcCCCCCh----hHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHH
Q 037256 156 AKCGQTDDGCKVFDEMSVRDL----VSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQ 231 (680)
Q Consensus 156 ~~~g~~~~A~~~f~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 231 (680)
...|++..|+..++.....+. .....+.++|...|++++|+..++. .-+|+..++..+...+...++.++|.
T Consensus 10 ~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~ 85 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIV 85 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHH
Confidence 345667777776665544322 2334456677777777777665543 12445556666666677777777777
Q ss_pred HHHHHHHHccC-CCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC
Q 037256 232 AVHGYAICNAF-LEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKP 310 (680)
Q Consensus 232 ~~~~~~~~~g~-~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 310 (680)
+.++.++..+. +.+...+..+...|.+.|++++|.+.|++ ..+...+..++..|.+.|++++|.+.|+++.+.. |
T Consensus 86 ~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p 161 (291)
T 3mkr_A 86 AELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--E 161 (291)
T ss_dssp HHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--c
Confidence 77777766653 33455666777889999999999999998 4678889999999999999999999999998763 5
Q ss_pred CHhhHHHHH----HHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHH
Q 037256 311 NPVTALILV----SACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNV 385 (680)
Q Consensus 311 ~~~t~~~ll----~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~ 385 (680)
+.. ...+. ..+...|++++|..+++.+.+.. +.+..+++.+..+|.+.|++++|.+.|++.....| +..+|..
T Consensus 162 ~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~ 239 (291)
T 3mkr_A 162 DAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLIN 239 (291)
T ss_dssp TCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 432 22222 22334477777777777777663 55677777777777777777777777777644444 4666777
Q ss_pred HHHHHHhcCChHH-HHHHHHHHHHcCCCCCHHH
Q 037256 386 LIAGYGMHGHGRK-ALEFFSQMLEEGVKPDHIT 417 (680)
Q Consensus 386 li~~~~~~g~~~~-A~~l~~~m~~~g~~p~~~t 417 (680)
++..+...|+.++ +.++++++.+ +.|+...
T Consensus 240 l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~~ 270 (291)
T 3mkr_A 240 LVVLSQHLGKPPEVTNRYLSQLKD--AHRSHPF 270 (291)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHH--hCCCChH
Confidence 7777777777654 4567777776 4566543
No 35
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.64 E-value=5.8e-16 Score=169.89 Aligned_cols=146 Identities=12% Similarity=0.049 Sum_probs=124.0
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHH---HcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHH
Q 037256 380 VSSWNVLIAGYGMHGHGRKALEFFSQML---EEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACM 456 (680)
Q Consensus 380 ~~~~~~li~~~~~~g~~~~A~~l~~~m~---~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 456 (680)
..+||+||.+|++.|+.++|.++|++|. ..|+.||.+||++||.+|++.|++++|.++|++|.+.|+.||..+|++|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 5689999999999999999999998876 4589999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCH-HHHHHHHHhC---CCCCCHhHHHHHHHHHHHH-HHHHHHHHHc-cCCC-----CCchHHHHHHHHHhcC
Q 037256 457 VDMLGRAGCL-YEAFDMIKQM---PLPPNDSVWGALLLACRIH-GEIAANYLFQ-LEPE-----HTGYFVLMSNIYAASN 525 (680)
Q Consensus 457 i~~~~~~g~~-~~A~~~~~~m---~~~p~~~~~~~ll~a~~~~-~~~~~~~~~~-l~p~-----~~~~~~~l~~~~~~~g 525 (680)
|+++++.|+. ++|.++|++| ++.||.++|++++.++.+. ..++.+++.. +.|+ ...+..+|-++|++.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 9999999985 7899999999 8999999999999888766 3334444321 2222 1233446788888766
No 36
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.63 E-value=6.7e-14 Score=141.76 Aligned_cols=274 Identities=11% Similarity=-0.007 Sum_probs=145.4
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 037256 74 YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVD 153 (680)
Q Consensus 74 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 153 (680)
+...|..+...+...|++++|+.+|+++.+..+ .+..++..+..++...|++++|...++.+++.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 344566677777777777777777777766532 244556666666666777777777777666653 234444555555
Q ss_pred HHHhcCChHHHHHHHhcCCCC---ChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHH--HHhccCChH
Q 037256 154 MYAKCGQTDDGCKVFDEMSVR---DLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVAS--AVGQLGDVL 228 (680)
Q Consensus 154 ~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~--~~~~~~~~~ 228 (680)
.|...|++++|.+.|+++... +...+..+... .|+......+.. .+...|+++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTTTC------------------------------------------CCTTSHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHH
Confidence 555555555555555443211 11111111000 000000111102 245556666
Q ss_pred HHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 037256 229 KAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEK---RDLISWNSMLTGYIQNGQASEALLLFDEMQN 305 (680)
Q Consensus 229 ~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 305 (680)
+|...+..+.+.. +.+..++..+...|.+.|++++|.+.|+++.+ .+..+|..+...+...|++++|...|+++.+
T Consensus 156 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 156 ECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666666554 33555666666666777777777666666542 3455666666667777777777777766655
Q ss_pred CCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCC-----------chHHHHHHHHHHHHcCCHHHHHHHHhhc
Q 037256 306 SDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKI-----------DATLRNAVMDMYAKCGDLDTAENMFNDI 373 (680)
Q Consensus 306 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~-----------~~~~~~~li~~y~k~g~~~~A~~~f~~~ 373 (680)
.. +.+..++..+...+...|++++|...++.+.+..... +..++..+..+|.+.|+.++|..++++.
T Consensus 235 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 235 IN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred cC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 42 2234445555555555555555555555554432111 3444455555555555555555555443
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.55 E-value=3.1e-13 Score=131.67 Aligned_cols=224 Identities=12% Similarity=0.069 Sum_probs=163.0
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCC--Cc----hHHHH
Q 037256 278 ISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMK--ID----ATLRN 351 (680)
Q Consensus 278 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~--~~----~~~~~ 351 (680)
..|..+...+...|++++|+..|++..+.. .+...+..+..++...|++++|...+..+.+.... ++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 345556666666677777777776666554 55556666666666666666666666666543211 11 46777
Q ss_pred HHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCC
Q 037256 352 AVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH-ITFTSILSACSHAGL 430 (680)
Q Consensus 352 ~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~ 430 (680)
.+...|.+.|++++|.+.|++.....|+. ..+...|++++|...++++.. ..|+. ..+..+...+...|+
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhcC
Confidence 78888888888888888888774445553 345566778888888888887 45554 467777778888888
Q ss_pred HHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHHHHHHHHHHccCCCC
Q 037256 431 IDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEIAANYLFQLEPEH 510 (680)
Q Consensus 431 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~~~~~~l~p~~ 510 (680)
+++|...++++.+.. +.+...|..+...|.+.|++++|.+.+++. +++.|++
T Consensus 155 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a---------------------------l~~~~~~ 206 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKA---------------------------IEKDPNF 206 (258)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------------------HHHCTTC
T ss_pred HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHH---------------------------HHhCHHH
Confidence 888888888888764 445677888888888888888888877653 4567888
Q ss_pred CchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 037256 511 TGYFVLMSNIYAASNKWREVGKLREDMKNK 540 (680)
Q Consensus 511 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 540 (680)
+..+..++.+|...|++++|.+.+++..+.
T Consensus 207 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 207 VRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 888999999999999999999999988753
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.52 E-value=2.2e-13 Score=129.45 Aligned_cols=195 Identities=14% Similarity=0.076 Sum_probs=107.3
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 037256 276 DLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMD 355 (680)
Q Consensus 276 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 355 (680)
+...|..+...+.+.|++++|+..|++..+.. + .+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p-----------------------------------~~~~a~~~lg~ 47 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-P-----------------------------------QDPEALYWLAR 47 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-S-----------------------------------SCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C-----------------------------------CCHHHHHHHHH
Confidence 34455556666666666666666666665432 2 23333444444
Q ss_pred HHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhc-----------CChHHHHHHHHHHHHcCCCCCH-HHHHHHH
Q 037256 356 MYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMH-----------GHGRKALEFFSQMLEEGVKPDH-ITFTSIL 422 (680)
Q Consensus 356 ~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~-----------g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll 422 (680)
.|.+.|++++|...|++.....| +...|..+...|... |++++|+..|++..+ +.|+. ..+..+.
T Consensus 48 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~lg 125 (217)
T 2pl2_A 48 TQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAER--VNPRYAPLHLQRG 125 (217)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH--hCcccHHHHHHHH
Confidence 44444444444444444422222 234444455555555 667777777776666 34543 3566666
Q ss_pred HHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHHHHHHHH
Q 037256 423 SACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEIAANY 502 (680)
Q Consensus 423 ~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~~~ 502 (680)
.++...|++++|...|++..+.. .+...+..+..+|...|++++|+..+++
T Consensus 126 ~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~--------------------------- 176 (217)
T 2pl2_A 126 LVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAK--------------------------- 176 (217)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHH---------------------------
T ss_pred HHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHH---------------------------
Confidence 66677777777777777766655 5666666677777777777776666654
Q ss_pred HHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHH
Q 037256 503 LFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDM 537 (680)
Q Consensus 503 ~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 537 (680)
+++++|+++..+..++.++...|++++|.+.+++.
T Consensus 177 al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 177 ALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 34567777777777888888888888877777654
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.52 E-value=8.1e-13 Score=128.66 Aligned_cols=226 Identities=12% Similarity=0.027 Sum_probs=141.0
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCC--ChhHHHHHHHH
Q 037256 178 SWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLE--DLCIQNSIVAM 255 (680)
Q Consensus 178 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~Li~~ 255 (680)
.|..+...+...|++++|++.|++..+.. .+...+..+...+...|++++|...+..+++..... +..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~-------- 76 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK-------- 76 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH--------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH--------
Confidence 45555666666666666666666665554 444455555555555555555555554444322110 000
Q ss_pred HHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHH
Q 037256 256 YARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFH 335 (680)
Q Consensus 256 y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~ 335 (680)
.....|..+...|...|++++|+..|++..+. .|+. ..+...|+++++...+
T Consensus 77 -------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~ 128 (258)
T 3uq3_A 77 -------------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKA 128 (258)
T ss_dssp -------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHH
T ss_pred -------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHH
Confidence 00345556666666666666666666666653 2332 2345556677777777
Q ss_pred HHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCC-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 037256 336 GYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSE-RNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPD 414 (680)
Q Consensus 336 ~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 414 (680)
..+.+.. +.+..++..+...|.+.|++++|.+.|++..... .+...|..+...|...|++++|+..|++..+. .|+
T Consensus 129 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~ 205 (258)
T 3uq3_A 129 EAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPN 205 (258)
T ss_dssp HHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred HHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CHH
Confidence 7666543 3355667777777888888888888887764433 34677788888888888888888888888774 344
Q ss_pred -HHHHHHHHHHHHccCCHHHHHHHHHHhhhc
Q 037256 415 -HITFTSILSACSHAGLIDEGRKCFADMTKL 444 (680)
Q Consensus 415 -~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 444 (680)
..++..+..++...|++++|.+.+++..+.
T Consensus 206 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 206 FVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 457777777888888888888888877664
No 40
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.50 E-value=2.9e-12 Score=126.05 Aligned_cols=223 Identities=12% Similarity=0.046 Sum_probs=168.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC--HhhHHHHHHHHhh
Q 037256 250 NSIVAMYARCGNVEKARLVFDMMEK---RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPN--PVTALILVSACTY 324 (680)
Q Consensus 250 ~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~ 324 (680)
......+.+.|++++|...|++..+ .+...|..+...|...|++++|++.|++..+.+..|+ ...+..+...+..
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 3455666677777777777776543 2445677777778888888888888888776331222 2236777777788
Q ss_pred hcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHH-HHHHhcCChHHHHHH
Q 037256 325 LGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLI-AGYGMHGHGRKALEF 402 (680)
Q Consensus 325 ~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li-~~~~~~g~~~~A~~l 402 (680)
.|++++|...+..+.+.. +.+..++..+...|.+.|++++|.+.|++.....| +...|..+. ..|. .+++++|++.
T Consensus 87 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~ 164 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY-NKEYVKADSS 164 (272)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 888888888888887765 44667889999999999999999999999976655 567787777 5554 5699999999
Q ss_pred HHHHHHcCCCCC-HHHHHHHHHHHHccCC---HHHHHHHHHHhhhc-CCCcC------hHHHHHHHHHHHhcCCHHHHHH
Q 037256 403 FSQMLEEGVKPD-HITFTSILSACSHAGL---IDEGRKCFADMTKL-SVKPE------VKHYACMVDMLGRAGCLYEAFD 471 (680)
Q Consensus 403 ~~~m~~~g~~p~-~~t~~~ll~a~~~~g~---~~~a~~~~~~m~~~-~~~p~------~~~~~~li~~~~~~g~~~~A~~ 471 (680)
|++..+ ..|+ ...+..+...+...|+ +++|...++++.+. .-.|+ ...|..+...|.+.|++++|.+
T Consensus 165 ~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (272)
T 3u4t_A 165 FVKVLE--LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242 (272)
T ss_dssp HHHHHH--HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHH--hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999998 4565 4577777888888888 88899999888775 22344 2578888999999999999998
Q ss_pred HHHhC
Q 037256 472 MIKQM 476 (680)
Q Consensus 472 ~~~~m 476 (680)
.+++.
T Consensus 243 ~~~~a 247 (272)
T 3u4t_A 243 AWKNI 247 (272)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88765
No 41
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.50 E-value=5e-12 Score=134.29 Aligned_cols=343 Identities=13% Similarity=0.073 Sum_probs=183.9
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh---HHHHHHHhcCCCCChhHHHHHHHHHHhCC--
Q 037256 116 VLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQT---DDGCKVFDEMSVRDLVSWTVMITAYEQAE-- 190 (680)
Q Consensus 116 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~---~~A~~~f~~~~~~~~~~~~~li~~~~~~g-- 190 (680)
+...+.+.|++++|.+++....+.| ++..+..|..+|...|+. ++|...|++..+.++..+..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 3444555667777777777776665 222333444555556666 67777777666556666666666454444
Q ss_pred ---CccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChH---HHHHHHHHHHHccCCCChhHHHHHHHHHHhcC----
Q 037256 191 ---KPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVL---KAQAVHGYAICNAFLEDLCIQNSIVAMYARCG---- 260 (680)
Q Consensus 191 ---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~---~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g---- 260 (680)
++++|++.|++..+.|... .+..+...+...+..+ .+.+.+......| +......|..+|...+
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGG
T ss_pred CCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCccc
Confidence 5667777777777655322 3334444443333222 2333333333333 2344455556666555
Q ss_pred CHHHHHHHHHhcCCCChhHHHHHHHHHHHcC---ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHH
Q 037256 261 NVEKARLVFDMMEKRDLISWNSMLTGYIQNG---QASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGY 337 (680)
Q Consensus 261 ~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~ 337 (680)
+.+.+..+++.....++.++..|...|.+.| +.++|++.|++..+.| .++
T Consensus 160 ~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~-------------------------- 212 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVT-------------------------- 212 (452)
T ss_dssp GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSC--------------------------
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHH--------------------------
Confidence 3444555555555555556666666666666 6666666666666554 223
Q ss_pred HHHcCCCCchHHHHHHHHHHHHc----CCHHHHHHHHhhcCCCCCCHhHHHHHHHH-H--HhcCChHHHHHHHHHHHHcC
Q 037256 338 IINSNMKIDATLRNAVMDMYAKC----GDLDTAENMFNDIHPSERNVSSWNVLIAG-Y--GMHGHGRKALEFFSQMLEEG 410 (680)
Q Consensus 338 ~~~~~~~~~~~~~~~li~~y~k~----g~~~~A~~~f~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~l~~~m~~~g 410 (680)
...+..|..+|... +++++|.+.|++.. ..+...+..|... | ...++.++|++.|++..+.|
T Consensus 213 ---------a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa--~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g 281 (452)
T 3e4b_A 213 ---------AQRVDSVARVLGDATLGTPDEKTAQALLEKIA--PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD 281 (452)
T ss_dssp ---------HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG--GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT
T ss_pred ---------HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc--CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC
Confidence 23223344444333 56677777777764 3345556656555 3 35677888888888877765
Q ss_pred CCCCHHHHHHHHHHHHccC-----CHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCC
Q 037256 411 VKPDHITFTSILSACSHAG-----LIDEGRKCFADMTKLSVKPEVKHYACMVDMLGR----AGCLYEAFDMIKQMPLPPN 481 (680)
Q Consensus 411 ~~p~~~t~~~ll~a~~~~g-----~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~ 481 (680)
+...+..|...|. .| ++++|.++|++.. . -+...+..|..+|.. ..++++|.++|++.
T Consensus 282 ---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A----- 348 (452)
T 3e4b_A 282 ---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTA----- 348 (452)
T ss_dssp ---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHH-----
T ss_pred ---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH-----
Confidence 4455555555555 44 7888888888776 3 345556666666655 33777777777654
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHh----cCChhHHHHHHHHHHhCCC
Q 037256 482 DSVWGALLLACRIHGEIAANYLFQLEPEHTGYFVLMSNIYAA----SNKWREVGKLREDMKNKGL 542 (680)
Q Consensus 482 ~~~~~~ll~a~~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~ 542 (680)
.++.++.....|+.+|.. ..+.++|...+++..+.|.
T Consensus 349 ------------------------a~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 349 ------------------------ARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp ------------------------HTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred ------------------------HhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 124456677777777764 4577888888888777664
No 42
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.49 E-value=2.2e-12 Score=122.37 Aligned_cols=206 Identities=15% Similarity=0.013 Sum_probs=129.6
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHH
Q 037256 243 LEDLCIQNSIVAMYARCGNVEKARLVFDMMEK---RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILV 319 (680)
Q Consensus 243 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 319 (680)
+++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 56778889999999999999999999998765 367889999999999999999999999998753 33455555555
Q ss_pred HHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHH
Q 037256 320 SACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRK 398 (680)
Q Consensus 320 ~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~ 398 (680)
.++...+.. ... .+...|++++|...|++.....| +...|..+...|...|++++
T Consensus 81 ~~~~~~~~~---------------~~~---------~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~ 136 (217)
T 2pl2_A 81 EAYVALYRQ---------------AED---------RERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDK 136 (217)
T ss_dssp HHHHHHHHT---------------CSS---------HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhhhh---------------hhh---------hcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHH
Confidence 555554000 000 01122566666666665533333 35566666666667777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256 399 ALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM 476 (680)
Q Consensus 399 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 476 (680)
|+..|++..+.. .+...+..+..++...|++++|...|++..+.. +.+...+..+...+.+.|++++|.+.+++.
T Consensus 137 A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 137 AEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 777777766654 455566666666777777777777777766643 334556666666777777777777666654
No 43
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.48 E-value=3.1e-12 Score=135.93 Aligned_cols=186 Identities=13% Similarity=0.032 Sum_probs=117.4
Q ss_pred HHHHHHHHHHhcC---CHHHHHHHHHhcCC---CChhHHHHHHHHHHHc----CChhHHHHHHHHHHhCCCCCCHhhHHH
Q 037256 248 IQNSIVAMYARCG---NVEKARLVFDMMEK---RDLISWNSMLTGYIQN----GQASEALLLFDEMQNSDCKPNPVTALI 317 (680)
Q Consensus 248 ~~~~Li~~y~~~g---~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~g~~p~~~t~~~ 317 (680)
.+..|..+|.+.| +.++|.+.|++..+ ++...+..+...|... +++++|+..|++.. .| +...+..
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~ 253 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVS 253 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHH
Confidence 5555666666666 56666666655432 2233334455555433 56667777776665 32 2233333
Q ss_pred HHHH-H--hhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcC-----CHHHHHHHHhhcCCCCCCHhHHHHHHHH
Q 037256 318 LVSA-C--TYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCG-----DLDTAENMFNDIHPSERNVSSWNVLIAG 389 (680)
Q Consensus 318 ll~a-~--~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g-----~~~~A~~~f~~~~~~~~~~~~~~~li~~ 389 (680)
+... + ...++.++|...+....+.| +......|..+|. .| ++++|.+.|++.. ..++..+..|...
T Consensus 254 Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa--~g~~~A~~~Lg~~ 327 (452)
T 3e4b_A 254 LAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV--GREVAADYYLGQI 327 (452)
T ss_dssp HHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT--TTCHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh--CCCHHHHHHHHHH
Confidence 3333 2 34667777777777776665 5566666777776 45 8999999999885 5567777778777
Q ss_pred HHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHhhhcCC
Q 037256 390 YGM----HGHGRKALEFFSQMLEEGVKPDHITFTSILSACSH----AGLIDEGRKCFADMTKLSV 446 (680)
Q Consensus 390 ~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~ 446 (680)
|.. ..+.++|...|++..+.|. | .....|...|.. ..++++|..+|+...+.|.
T Consensus 328 y~~G~g~~~d~~~A~~~~~~Aa~~g~-~--~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 328 YRRGYLGKVYPQKALDHLLTAARNGQ-N--SADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp HHTTTTSSCCHHHHHHHHHHHHTTTC-T--THHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred HHCCCCCCcCHHHHHHHHHHHHhhCh-H--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 766 3488999999998888663 2 334444444543 4578888888888887763
No 44
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.47 E-value=1e-12 Score=129.43 Aligned_cols=195 Identities=10% Similarity=-0.089 Sum_probs=114.3
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 037256 278 ISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMY 357 (680)
Q Consensus 278 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y 357 (680)
.+|..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...+..+++.. +.+..++..+..+|
T Consensus 44 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~ 121 (275)
T 1xnf_A 44 QLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIAL 121 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHH
Confidence 344555555555555555555555555432 2234455555555555555555555555555443 33456666677777
Q ss_pred HHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 037256 358 AKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKC 437 (680)
Q Consensus 358 ~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 437 (680)
.+.|++++|.+.|+++....|+...+...+..+...|++++|...+++.... .+++...+ .++..+...++.++|...
T Consensus 122 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~a~~~ 199 (275)
T 1xnf_A 122 YYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK-SDKEQWGW-NIVEFYLGNISEQTLMER 199 (275)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-SCCCSTHH-HHHHHHTTSSCHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCcchHHH-HHHHHHHHhcCHHHHHHH
Confidence 7777777777777776444454443344444445567777777777776664 23333333 355566667777777777
Q ss_pred HHHhhhcCCC--c-ChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256 438 FADMTKLSVK--P-EVKHYACMVDMLGRAGCLYEAFDMIKQM 476 (680)
Q Consensus 438 ~~~m~~~~~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 476 (680)
++...+.... | +...+..+...|.+.|++++|.+.+++.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 241 (275)
T 1xnf_A 200 LKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLA 241 (275)
T ss_dssp HHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7776654211 1 1466777777777788888877777654
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.45 E-value=2e-11 Score=118.47 Aligned_cols=203 Identities=11% Similarity=0.008 Sum_probs=161.5
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHH
Q 037256 277 LISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDM 356 (680)
Q Consensus 277 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~ 356 (680)
...|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|.+.+..+.+.. +.+..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4567777778888888888888888877653 4456677777778888888888888888887765 4467788888999
Q ss_pred HHHcCCHHHHHHHHhhcCC--CCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 037256 357 YAKCGDLDTAENMFNDIHP--SER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDE 433 (680)
Q Consensus 357 y~k~g~~~~A~~~f~~~~~--~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 433 (680)
|.+.|++++|.+.|+++.. ..| +...|..+...|...|++++|.+.|++..+.. +.+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999866 444 46678888899999999999999999998853 2245678888889999999999
Q ss_pred HHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHh
Q 037256 434 GRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM-PLPPNDS 483 (680)
Q Consensus 434 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~ 483 (680)
|...++.+.+.. +.+...+..+...+.+.|++++|.+.++++ ...|+..
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 243 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSL 243 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCH
Confidence 999999988753 456777888889999999999999988876 3344433
No 46
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.44 E-value=4.8e-12 Score=124.57 Aligned_cols=241 Identities=11% Similarity=0.005 Sum_probs=140.3
Q ss_pred CCCccHHHHHHHHHHHcCCC---CCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHH
Q 037256 189 AEKPEEALILFQKTQQEGLL---SDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKA 265 (680)
Q Consensus 189 ~g~~~~A~~~~~~m~~~g~~---p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A 265 (680)
.|++++|++.|+++.+.... .+..++..+...+...|++++|...+..+++.. +.+..++..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 45666677777666654211 123445556666666666666666666666653 33566667777777777777777
Q ss_pred HHHHHhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcC
Q 037256 266 RLVFDMMEK---RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSN 342 (680)
Q Consensus 266 ~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~ 342 (680)
.+.|++..+ .+...|..+...|.+.|++++|...|+++.+. .|+.......+..+...|+++.|...+.......
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 777776653 35667777777888888888888888877764 3443333344444455667777777776665543
Q ss_pred CCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCC-----HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHH
Q 037256 343 MKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERN-----VSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHIT 417 (680)
Q Consensus 343 ~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 417 (680)
+++...+. ++..+...++.++|.+.++......|+ ...|..+...|...|++++|...|++..+ ..|+..
T Consensus 175 -~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~- 249 (275)
T 1xnf_A 175 -DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA--NNVHNF- 249 (275)
T ss_dssp -CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCTTC-
T ss_pred -CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh--CCchhH-
Confidence 22333332 555566666666677766666433221 34556666666666666666666666665 334321
Q ss_pred HHHHHHHHHccCCHHHHHHHH
Q 037256 418 FTSILSACSHAGLIDEGRKCF 438 (680)
Q Consensus 418 ~~~ll~a~~~~g~~~~a~~~~ 438 (680)
.....++...|++++|.+.+
T Consensus 250 -~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 -VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -HHHHHHHHHHHHHHHC----
T ss_pred -HHHHHHHHHHHHHHhhHHHH
Confidence 11123444555555555443
No 47
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.41 E-value=4e-11 Score=113.85 Aligned_cols=204 Identities=11% Similarity=0.057 Sum_probs=126.3
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHH
Q 037256 277 LISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDM 356 (680)
Q Consensus 277 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~ 356 (680)
+..|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|+++.|...++.+.+.. +.+..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 3444555555555555555555555555432 2234455555555555555555555555555443 3345566667777
Q ss_pred HHHc-CCHHHHHHHHhhcCC--CCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCH
Q 037256 357 YAKC-GDLDTAENMFNDIHP--SERN-VSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPD-HITFTSILSACSHAGLI 431 (680)
Q Consensus 357 y~k~-g~~~~A~~~f~~~~~--~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~ 431 (680)
|... |++++|...|+++.. ..|+ ...|..+...|...|++++|+..|+++.+. .|+ ...+..+...+...|++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCH
Confidence 7777 777777777777644 2222 456777777777778888888877777764 343 45667777777777888
Q ss_pred HHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHhH
Q 037256 432 DEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM-PLPPNDSV 484 (680)
Q Consensus 432 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~ 484 (680)
++|...++.+.+.....+...+..+...+...|+.++|..+++.+ ...|+...
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 217 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEE 217 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHH
Confidence 888888777776531145566666777777777777777777665 23444433
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.39 E-value=7.1e-12 Score=120.81 Aligned_cols=195 Identities=13% Similarity=0.109 Sum_probs=107.9
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 037256 278 ISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMY 357 (680)
Q Consensus 278 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y 357 (680)
..|..+...+.+.|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+...|
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVY 101 (243)
T ss_dssp ------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHH
Confidence 334444455555555555555555555432 2234444455555555555555555555555443 33455666666666
Q ss_pred HHcCCHHHHHHHHhhcCCCC-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 037256 358 AKCGDLDTAENMFNDIHPSE-RNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRK 436 (680)
Q Consensus 358 ~k~g~~~~A~~~f~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 436 (680)
.+.|++++|.+.|+++.... .+...|..+...|...|++++|++.++++.+.. +.+...+..+...+...|++++|..
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHH
Confidence 67777777777776653332 345566667777777777777777777776632 2234566666667777777777777
Q ss_pred HHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256 437 CFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM 476 (680)
Q Consensus 437 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 476 (680)
.++++.+.. +.+...+..+...|.+.|++++|.+.++++
T Consensus 181 ~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 219 (243)
T 2q7f_A 181 QFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKA 219 (243)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 777766653 334566677777777777777777766654
No 49
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.39 E-value=1.4e-10 Score=114.07 Aligned_cols=223 Identities=13% Similarity=0.005 Sum_probs=115.0
Q ss_pred ChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc----cCChHHHHHHHHHHHHccCCCChhHHH
Q 037256 175 DLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQ----LGDVLKAQAVHGYAICNAFLEDLCIQN 250 (680)
Q Consensus 175 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~ 250 (680)
+..++..+...|.+.|++++|++.|++..+. .+...+..+...+.. .+++++|...+....+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4445556666666666666666666666552 233444444444544 555555555555555443 344444
Q ss_pred HHHHHHHh----cCCHHHHHHHHHhcCC-CChhHHHHHHHHHHH----cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 037256 251 SIVAMYAR----CGNVEKARLVFDMMEK-RDLISWNSMLTGYIQ----NGQASEALLLFDEMQNSDCKPNPVTALILVSA 321 (680)
Q Consensus 251 ~Li~~y~~----~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 321 (680)
.|..+|.. .+++++|.+.|++..+ .+..++..+...|.. .+++++|+..|++..+.+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-------------- 144 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN-------------- 144 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--------------
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--------------
Confidence 45555555 5555555555554432 234445555555555 555555555555554433
Q ss_pred HhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHH----cCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHh----c
Q 037256 322 CTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAK----CGDLDTAENMFNDIHPSERNVSSWNVLIAGYGM----H 393 (680)
Q Consensus 322 ~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k----~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~----~ 393 (680)
+...+..+...|.+ .+++++|...|++.... .+..++..+...|.. .
T Consensus 145 ------------------------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~~~g~~~~ 199 (273)
T 1ouv_A 145 ------------------------DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-KDSPGCFNAGNMYHHGEGAT 199 (273)
T ss_dssp ------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTCSSC
T ss_pred ------------------------cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCC
Confidence 22333344444444 45555555555544211 234455555555555 5
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHhhhcC
Q 037256 394 GHGRKALEFFSQMLEEGVKPDHITFTSILSACSH----AGLIDEGRKCFADMTKLS 445 (680)
Q Consensus 394 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~ 445 (680)
+++++|++.|++..+.+ | ...+..+...+.. .+++++|.+.|++..+.|
T Consensus 200 ~~~~~A~~~~~~a~~~~--~-~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 200 KNFKEALARYSKACELE--N-GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CCHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHhCC--C-HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 56666666666555532 2 3344445555555 566666666666655543
No 50
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.39 E-value=5.2e-11 Score=117.00 Aligned_cols=181 Identities=11% Similarity=-0.027 Sum_probs=139.7
Q ss_pred CChHHHHHHhhhccCCCC-CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCccc----HHHHHHHHhccCChHHHH
Q 037256 56 GEPNTARSLFNSIHNDKS-YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYT----FPFVLKACASNSLILEGK 130 (680)
Q Consensus 56 g~~~~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~~~~~~~~~~~a~ 130 (680)
|++++|+..|+...+..| +...|..+...+.+.|++++|+..|++..+.+ ++... |..+...+...|++++|.
T Consensus 17 ~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~lg~~~~~~~~~~~A~ 94 (272)
T 3u4t_A 17 NNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NATKAKSADFEYYGKILMKKGQDSLAI 94 (272)
T ss_dssp TCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTTTCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--CchhHHHHHHHHHHHHHHHcccHHHHH
Confidence 999999999999988877 55689999999999999999999999998843 33333 778888899999999999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCC
Q 037256 131 VVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSV---RDLVSWTVMITAYEQAEKPEEALILFQKTQQEGL 207 (680)
Q Consensus 131 ~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 207 (680)
..++..++.. +.+..++..+...|...|++++|.+.|++... .+...|..+...+...+++++|++.|++..+..
T Consensus 95 ~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~- 172 (272)
T 3u4t_A 95 QQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK- 172 (272)
T ss_dssp HHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-
Confidence 9999999875 45677888999999999999999999988764 355677777733444558999999999888753
Q ss_pred CCCHhHHHHHHHHHhccCC---hHHHHHHHHHHHHc
Q 037256 208 LSDSVTIVSVASAVGQLGD---VLKAQAVHGYAICN 240 (680)
Q Consensus 208 ~p~~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~ 240 (680)
+.+...+..+...+...++ .++|...+..+++.
T Consensus 173 p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 208 (272)
T 3u4t_A 173 PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEV 208 (272)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHH
Confidence 2234555555555655555 55566666655543
No 51
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.38 E-value=7.1e-11 Score=114.58 Aligned_cols=205 Identities=12% Similarity=0.061 Sum_probs=127.2
Q ss_pred hhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHH
Q 037256 176 LVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAM 255 (680)
Q Consensus 176 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~ 255 (680)
...|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|.+.+..+.+.. +.+..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4567777788888888888888888877653 2344555555556666666666666666555543 2234444555555
Q ss_pred HHhcCCHHHHHHHHHhcCC--C---ChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHH
Q 037256 256 YARCGNVEKARLVFDMMEK--R---DLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQL 330 (680)
Q Consensus 256 y~~~g~~~~A~~~f~~m~~--~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 330 (680)
|.+.|++++|.+.|+++.+ . +...|..+...+.+.|++++|.+.|++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~---------------------------- 166 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEK---------------------------- 166 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHH----------------------------
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHH----------------------------
Confidence 5555555555555555433 1 223344444444455555555554444
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCC-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 037256 331 GRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSE-RNVSSWNVLIAGYGMHGHGRKALEFFSQMLEE 409 (680)
Q Consensus 331 a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 409 (680)
+.+.. +.+...+..+...|.+.|++++|...|+++.... .+...|..+...+...|+.++|.+.++++.+
T Consensus 167 -------~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~- 237 (252)
T 2ho1_A 167 -------SLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR- 237 (252)
T ss_dssp -------HHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred -------HHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH-
Confidence 44433 2345666777778888888888888888775443 3566777788888888888888888888887
Q ss_pred CCCCCHHHHHH
Q 037256 410 GVKPDHITFTS 420 (680)
Q Consensus 410 g~~p~~~t~~~ 420 (680)
..|+...+..
T Consensus 238 -~~p~~~~~~~ 247 (252)
T 2ho1_A 238 -LYPGSLEYQE 247 (252)
T ss_dssp -HCTTSHHHHH
T ss_pred -HCCCCHHHHH
Confidence 4565554433
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.38 E-value=1.7e-10 Score=113.53 Aligned_cols=219 Identities=11% Similarity=0.025 Sum_probs=173.7
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhcCCC-ChhHHHHHHHHHHH----cCChhHHHHHHHHHHhCCCCCCHhhHHHHH
Q 037256 245 DLCIQNSIVAMYARCGNVEKARLVFDMMEKR-DLISWNSMLTGYIQ----NGQASEALLLFDEMQNSDCKPNPVTALILV 319 (680)
Q Consensus 245 ~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 319 (680)
+...+..+...|...|++++|...|++..++ +..++..+...|.. .+++++|+..|++..+.+ +...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 4455566777777778888888877776543 55677777778888 888888888888887765 566777777
Q ss_pred HHHhh----hcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHH----cCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHH
Q 037256 320 SACTY----LGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAK----CGDLDTAENMFNDIHPSERNVSSWNVLIAGYG 391 (680)
Q Consensus 320 ~a~~~----~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k----~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~ 391 (680)
..+.. .+++++|...++...+.+ +...+..+..+|.+ .+++++|.+.|++..... +..++..+...|.
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~ 157 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN-DGDGCTILGSLYD 157 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC-cHHHHHHHHHHHH
Confidence 77777 888888888888888765 67788888888998 999999999999874333 6777888888888
Q ss_pred h----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHh-
Q 037256 392 M----HGHGRKALEFFSQMLEEGVKPDHITFTSILSACSH----AGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGR- 462 (680)
Q Consensus 392 ~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~- 462 (680)
. .+++++|+..|++..+.+ +...+..+...+.. .+++++|.+.|++..+.+ +...+..+..+|.+
T Consensus 158 ~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 158 AGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNG 231 (273)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTT
T ss_pred cCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcC
Confidence 7 899999999999998864 45677778888888 899999999999988864 25667778888888
Q ss_pred ---cCCHHHHHHHHHhC
Q 037256 463 ---AGCLYEAFDMIKQM 476 (680)
Q Consensus 463 ---~g~~~~A~~~~~~m 476 (680)
.|++++|.+.+++.
T Consensus 232 ~~~~~~~~~A~~~~~~a 248 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKG 248 (273)
T ss_dssp SSSSCCSTTHHHHHHHH
T ss_pred CCcccCHHHHHHHHHHH
Confidence 89999999888875
No 53
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.36 E-value=8.9e-11 Score=111.39 Aligned_cols=210 Identities=12% Similarity=0.039 Sum_probs=110.8
Q ss_pred hhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHH
Q 037256 176 LVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAM 255 (680)
Q Consensus 176 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~ 255 (680)
...|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|...+..+.+.. +.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~----------- 74 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PD----------- 74 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT-----------
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CC-----------
Confidence 3445555556666666666666666555432 1223334444444444444444444444443332 11
Q ss_pred HHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHc-CChhHHHHHHHHHHhCCCCCC-HhhHHHHHHHHhhhcchHHHHH
Q 037256 256 YARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQN-GQASEALLLFDEMQNSDCKPN-PVTALILVSACTYLGSRQLGRK 333 (680)
Q Consensus 256 y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~ 333 (680)
+..+|..+...+... |++++|+..|+++.+.+..|+ ...+..+..++...|++++|..
T Consensus 75 --------------------~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 134 (225)
T 2vq2_A 75 --------------------SAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEA 134 (225)
T ss_dssp --------------------CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred --------------------ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHH
Confidence 233344444444444 444444444444444211222 2334444444455555555555
Q ss_pred HHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 037256 334 FHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSE--RNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGV 411 (680)
Q Consensus 334 i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 411 (680)
.+..+.+.. +.+...+..+...|.+.|++++|.+.|+++.... .+...|..+...+...|+.++|..+++.+.+ .
T Consensus 135 ~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~ 211 (225)
T 2vq2_A 135 YLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA--N 211 (225)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred HHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH--h
Confidence 555544433 2345566667777777777777777777663332 3566677777777778888888888877776 3
Q ss_pred CCCHHHHHHH
Q 037256 412 KPDHITFTSI 421 (680)
Q Consensus 412 ~p~~~t~~~l 421 (680)
.|+...+..+
T Consensus 212 ~p~~~~~~~~ 221 (225)
T 2vq2_A 212 FPYSEELQTV 221 (225)
T ss_dssp CTTCHHHHHH
T ss_pred CCCCHHHHHH
Confidence 5655544433
No 54
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.35 E-value=8.2e-11 Score=121.16 Aligned_cols=225 Identities=9% Similarity=0.040 Sum_probs=117.5
Q ss_pred hhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCC-hHHHHHHHHHHHHccCCCChhHHHHHHH
Q 037256 176 LVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGD-VLKAQAVHGYAICNAFLEDLCIQNSIVA 254 (680)
Q Consensus 176 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 254 (680)
...|+.+...+.+.|++++|++.|++.++.. +-+...|..+..++...|+ +++|...++.+++.. +.+..+|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 4467777777888888888888888877653 2234445555555555554 555555555555543 223444555555
Q ss_pred HHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHH
Q 037256 255 MYARCGNVEKARLVFDMMEK---RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLG 331 (680)
Q Consensus 255 ~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 331 (680)
+|.+.|++++|...|+++.+ .+...|..+..++.+.|++++|+..|+++.+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~-------------------------- 228 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK-------------------------- 228 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--------------------------
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--------------------------
Confidence 55555555555555554432 2444555555555555555555555555554
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHH-cCCHHHH-----HHHHhhcCCCCC-CHhHHHHHHHHHHhcC--ChHHHHHH
Q 037256 332 RKFHGYIINSNMKIDATLRNAVMDMYAK-CGDLDTA-----ENMFNDIHPSER-NVSSWNVLIAGYGMHG--HGRKALEF 402 (680)
Q Consensus 332 ~~i~~~~~~~~~~~~~~~~~~li~~y~k-~g~~~~A-----~~~f~~~~~~~~-~~~~~~~li~~~~~~g--~~~~A~~l 402 (680)
.. +.+...|+.+..+|.+ .|..++| .+.|++.....| +...|+.+...+...| ++++|++.
T Consensus 229 ---------l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~ 298 (382)
T 2h6f_A 229 ---------ED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQ 298 (382)
T ss_dssp ---------HC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHH
T ss_pred ---------hC-CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHH
Confidence 33 2234444444444544 3333444 244444422233 3445555555555555 35556555
Q ss_pred HHHHHHcCCCCCH-HHHHHHHHHHHccC---------CHHHHHHHHHHh
Q 037256 403 FSQMLEEGVKPDH-ITFTSILSACSHAG---------LIDEGRKCFADM 441 (680)
Q Consensus 403 ~~~m~~~g~~p~~-~t~~~ll~a~~~~g---------~~~~a~~~~~~m 441 (680)
+.++ + ..|+. ..+..+...+...| .+++|.++++++
T Consensus 299 ~~~~-~--~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 299 LLDL-Q--PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp HHHH-T--TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHh-c--cCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 5555 2 33332 34455555555442 235566666665
No 55
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.35 E-value=1.9e-11 Score=128.30 Aligned_cols=266 Identities=14% Similarity=0.038 Sum_probs=167.2
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCC-H----hHHHHHHHHHhccCChHHHHHHHHHHHHcc-----CCCChh
Q 037256 178 SWTVMITAYEQAEKPEEALILFQKTQQEGLLSD-S----VTIVSVASAVGQLGDVLKAQAVHGYAICNA-----FLEDLC 247 (680)
Q Consensus 178 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-----~~~~~~ 247 (680)
.+..+...+...|++++|+..|++..+.+ |+ . ..+..+...+...|++++|...+..+++.. .+...
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~- 126 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA- 126 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH-
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH-
Confidence 45556677778888888888888877653 22 2 245555555666666666666665554321 01112
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhC----CCCC-CHhhHHHHHHHH
Q 037256 248 IQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNS----DCKP-NPVTALILVSAC 322 (680)
Q Consensus 248 ~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~a~ 322 (680)
.+|..+...|...|++++|+..|++..+. +-.| ...++..+...+
T Consensus 127 ------------------------------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 176 (411)
T 4a1s_A 127 ------------------------------KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVY 176 (411)
T ss_dssp ------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred ------------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Confidence 33444444555555555555555444321 1011 123444555555
Q ss_pred hhhcc-----------------hHHHHHHHHHHHHc----CC-CCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCC---
Q 037256 323 TYLGS-----------------RQLGRKFHGYIINS----NM-KIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSE--- 377 (680)
Q Consensus 323 ~~~g~-----------------~~~a~~i~~~~~~~----~~-~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~--- 377 (680)
...|+ ++.|...+....+. +. .....++..+...|...|++++|.+.|++.....
T Consensus 177 ~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 256 (411)
T 4a1s_A 177 HAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF 256 (411)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Confidence 55666 56666555554331 11 1223467778888888899999888888763321
Q ss_pred CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHccCCHHHHHHHHHHhhhc----
Q 037256 378 RN----VSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVK-PD----HITFTSILSACSHAGLIDEGRKCFADMTKL---- 444 (680)
Q Consensus 378 ~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~---- 444 (680)
.+ ..+|..+...|...|++++|.+.+++..+.... .+ ..++..+...+...|++++|.+++++..+.
T Consensus 257 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 257 GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 12 237788888999999999999999888763110 11 346777888899999999999999988764
Q ss_pred CC-CcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256 445 SV-KPEVKHYACMVDMLGRAGCLYEAFDMIKQM 476 (680)
Q Consensus 445 ~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 476 (680)
+. ......+..+...|.+.|++++|.+.+++.
T Consensus 337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 11 112456778889999999999999998875
No 56
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.34 E-value=1.9e-11 Score=127.73 Aligned_cols=264 Identities=14% Similarity=0.071 Sum_probs=114.5
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCC----HhHHHHHHHHHhccCChHHHHHHHHHHHHcc----CC-CChhH
Q 037256 178 SWTVMITAYEQAEKPEEALILFQKTQQEGLLSD----SVTIVSVASAVGQLGDVLKAQAVHGYAICNA----FL-EDLCI 248 (680)
Q Consensus 178 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g----~~-~~~~~ 248 (680)
.+......+...|++++|+..|++..+.+. .+ ...+..+...+...|++++|...+..+++.. .. ....+
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 344445555555555566655555554421 11 1234444444555555555555554443321 01 11334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHHcCC--------------------hhHHHHH
Q 037256 249 QNSIVAMYARCGNVEKARLVFDMMEK-----RD----LISWNSMLTGYIQNGQ--------------------ASEALLL 299 (680)
Q Consensus 249 ~~~Li~~y~~~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~~ 299 (680)
+..+...|...|++++|...|++..+ .+ ..++..+...|...|+ +++|+..
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 169 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF 169 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 45555556666666666655554432 11 2345555555666666 5555555
Q ss_pred HHHHHhC----CCCCC-HhhHHHHHHHHhhhcchHHHHHHHHHHHHcCC--C---CchHHHHHHHHHHHHcCCHHHHHHH
Q 037256 300 FDEMQNS----DCKPN-PVTALILVSACTYLGSRQLGRKFHGYIINSNM--K---IDATLRNAVMDMYAKCGDLDTAENM 369 (680)
Q Consensus 300 ~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~--~---~~~~~~~~li~~y~k~g~~~~A~~~ 369 (680)
+++..+. +..|. ..++..+...+...|+++.|...+....+... . ....++..+...|...|++++|...
T Consensus 170 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 249 (406)
T 3sf4_A 170 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 249 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 5544321 10111 12333444444444455554444444432100 0 0112344444445555555555554
Q ss_pred HhhcCCC---CCC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHccCCHHHHHHH
Q 037256 370 FNDIHPS---ERN----VSSWNVLIAGYGMHGHGRKALEFFSQMLEE----GVKPD-HITFTSILSACSHAGLIDEGRKC 437 (680)
Q Consensus 370 f~~~~~~---~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 437 (680)
|++.... .++ ..++..+...|...|++++|...+++..+. +-.+. ..++..+...+...|++++|.+.
T Consensus 250 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 329 (406)
T 3sf4_A 250 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHF 329 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4443111 011 233444444445555555555554444331 00011 12334444444444555555544
Q ss_pred HHHhh
Q 037256 438 FADMT 442 (680)
Q Consensus 438 ~~~m~ 442 (680)
+++..
T Consensus 330 ~~~al 334 (406)
T 3sf4_A 330 AEKHL 334 (406)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 57
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.34 E-value=1.3e-10 Score=119.65 Aligned_cols=239 Identities=12% Similarity=0.086 Sum_probs=170.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCC-hhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhh
Q 037256 249 QNSIVAMYARCGNVEKARLVFDMMEK---RDLISWNSMLTGYIQNGQ-ASEALLLFDEMQNSDCKPNPVTALILVSACTY 324 (680)
Q Consensus 249 ~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 324 (680)
++.+...+.+.|++++|.+.|+++.+ .+...|+.+...+...|+ +++|+..|++..+.. +-+...|..+..++..
T Consensus 100 ~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~~ 178 (382)
T 2h6f_A 100 YDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEW 178 (382)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHH
Confidence 34444455555555555555555442 245556666666666664 666666666666543 2345556666666666
Q ss_pred hcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHh-cCChHHH---
Q 037256 325 LGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGM-HGHGRKA--- 399 (680)
Q Consensus 325 ~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~-~g~~~~A--- 399 (680)
.|++++|...++.+++.. +.+...|..+..++.+.|++++|...|+++....| +...|+.+...|.. .|..++|
T Consensus 179 ~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~ 257 (382)
T 2h6f_A 179 LRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLE 257 (382)
T ss_dssp HTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHH
T ss_pred ccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHH
Confidence 666666666666666655 55778888899999999999999999999865555 58899999999998 6665777
Q ss_pred --HHHHHHHHHcCCCCCH-HHHHHHHHHHHccC--CHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcC---------C
Q 037256 400 --LEFFSQMLEEGVKPDH-ITFTSILSACSHAG--LIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAG---------C 465 (680)
Q Consensus 400 --~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---------~ 465 (680)
++.|++.++ +.|+. ..|..+...+...| ++++|.+.+.++ + ..+.+...+..+.+.|.+.| .
T Consensus 258 ~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~-~~p~~~~al~~La~~~~~~~~~~~~~~~~~ 333 (382)
T 2h6f_A 258 REVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q-PSHSSPYLIAFLVDIYEDMLENQCDNKEDI 333 (382)
T ss_dssp HHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T-TTCCCHHHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c-cCCCCHHHHHHHHHHHHHHhcccccchHHH
Confidence 588999988 56765 47888888888888 689999999888 3 23556778889999998874 3
Q ss_pred HHHHHHHHHhC--CCCCCH-hHHHHHHHHHH
Q 037256 466 LYEAFDMIKQM--PLPPND-SVWGALLLACR 493 (680)
Q Consensus 466 ~~~A~~~~~~m--~~~p~~-~~~~~ll~a~~ 493 (680)
+++|+++++++ .+.|+. ..|..+...+.
T Consensus 334 ~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 334 LNKALELCEILAKEKDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 58999999998 567754 45666655544
No 58
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.33 E-value=4e-11 Score=121.36 Aligned_cols=270 Identities=11% Similarity=0.001 Sum_probs=162.1
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCC-----HhHHHHHHHHHhccCChHHHHHHHHHHHHccCC-CChhHHHH
Q 037256 178 SWTVMITAYEQAEKPEEALILFQKTQQEGLLSD-----SVTIVSVASAVGQLGDVLKAQAVHGYAICNAFL-EDLCIQNS 251 (680)
Q Consensus 178 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~ 251 (680)
.+......+...|++++|+..|++..+.. |+ ...+..+...+...|++++|...+..+++.... ++.
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~----- 79 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ----- 79 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-----
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccccc-----
Confidence 34455666777777777777777776653 22 234445555555566666666655554432100 000
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCC----HhhHHHHHHHHhhhc
Q 037256 252 IVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDC-KPN----PVTALILVSACTYLG 326 (680)
Q Consensus 252 Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g 326 (680)
.....++..+...|...|++++|...+++..+... .++ ..++..+...+...|
T Consensus 80 ----------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~ 137 (338)
T 3ro2_A 80 ----------------------LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG 137 (338)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcC
Confidence 00123344445555555555555555554432100 011 224444455555555
Q ss_pred c--------------------hHHHHHHHHHHHHc----CC-CCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCC---CC
Q 037256 327 S--------------------RQLGRKFHGYIINS----NM-KIDATLRNAVMDMYAKCGDLDTAENMFNDIHPS---ER 378 (680)
Q Consensus 327 ~--------------------~~~a~~i~~~~~~~----~~-~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~---~~ 378 (680)
+ ++.|...+....+. +. +....++..+...|...|++++|.+.|++.... .+
T Consensus 138 ~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 217 (338)
T 3ro2_A 138 KSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG 217 (338)
T ss_dssp HTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred cccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC
Confidence 5 55555555544321 11 112346677778888888888888888876322 11
Q ss_pred C----HhHHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhc----C
Q 037256 379 N----VSSWNVLIAGYGMHGHGRKALEFFSQMLEEG----VKPD-HITFTSILSACSHAGLIDEGRKCFADMTKL----S 445 (680)
Q Consensus 379 ~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~----~ 445 (680)
+ ..+|..+...|...|++++|.+.+++..+.. ..+. ..++..+...+...|++++|...+++..+. +
T Consensus 218 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 297 (338)
T 3ro2_A 218 DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 297 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence 2 3367888888899999999999998877531 1111 346777788889999999999999887664 1
Q ss_pred C-CcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256 446 V-KPEVKHYACMVDMLGRAGCLYEAFDMIKQM 476 (680)
Q Consensus 446 ~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 476 (680)
. ......+..+...|.+.|++++|.+.+++.
T Consensus 298 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 298 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 1 112446778889999999999999998875
No 59
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.33 E-value=2.3e-11 Score=130.07 Aligned_cols=213 Identities=11% Similarity=0.042 Sum_probs=171.3
Q ss_pred hhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcch-HHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHh
Q 037256 293 ASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSR-QLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFN 371 (680)
Q Consensus 293 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~-~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~ 371 (680)
+++++..+++..... +.+...+..+..++...|++ ++|...++.+++.. +.+...+..+...|.+.|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 456666666555432 34566677777777777888 88888887777765 4467788889999999999999999999
Q ss_pred hcCCCCCCHhHHHHHHHHHHhc---------CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcc--------CCHHH
Q 037256 372 DIHPSERNVSSWNVLIAGYGMH---------GHGRKALEFFSQMLEEGVKPD-HITFTSILSACSHA--------GLIDE 433 (680)
Q Consensus 372 ~~~~~~~~~~~~~~li~~~~~~---------g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~--------g~~~~ 433 (680)
+.....|+...|..+...|... |++++|++.|++..+ +.|+ ...+..+..++... |++++
T Consensus 162 ~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 162 GALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ--MDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 9877788888888999999998 999999999999998 4555 55788888888888 99999
Q ss_pred HHHHHHHhhhcCCC---cChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHHHHHHHHHHccCCCC
Q 037256 434 GRKCFADMTKLSVK---PEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEIAANYLFQLEPEH 510 (680)
Q Consensus 434 a~~~~~~m~~~~~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~~~~~~l~p~~ 510 (680)
|.+.|++..+.. + .+...|..+..+|.+.|++++|++.+++. ++++|++
T Consensus 240 A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a---------------------------l~l~p~~ 291 (474)
T 4abn_A 240 ALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQA---------------------------AALDPAW 291 (474)
T ss_dssp HHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------------------HHHCTTC
T ss_pred HHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHH---------------------------HHhCCCC
Confidence 999999998863 2 47888999999999999999998888653 5678888
Q ss_pred CchHHHHHHHHHhcCChhHHHHHHHHH
Q 037256 511 TGYFVLMSNIYAASNKWREVGKLREDM 537 (680)
Q Consensus 511 ~~~~~~l~~~~~~~g~~~~A~~~~~~m 537 (680)
+..+..++.++...|++++|.+.+.++
T Consensus 292 ~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 292 PEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 888899999999999999998755443
No 60
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.33 E-value=3.6e-11 Score=115.84 Aligned_cols=196 Identities=10% Similarity=0.030 Sum_probs=124.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 037256 246 LCIQNSIVAMYARCGNVEKARLVFDMMEK---RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSAC 322 (680)
Q Consensus 246 ~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 322 (680)
...+..+...+...|++++|...|+++.+ .+...|..+...|...|++++|+..|+++.+.. +.+...+..+...+
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVY 101 (243)
T ss_dssp -------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHH
Confidence 34455555666666666666666666543 245666666677777777777777777766543 33555666666677
Q ss_pred hhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCC-CCHhHHHHHHHHHHhcCChHHHHH
Q 037256 323 TYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSE-RNVSSWNVLIAGYGMHGHGRKALE 401 (680)
Q Consensus 323 ~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~ 401 (680)
...|+++.|...++.+.+.. +.+..++..+...|.+.|++++|.+.|+++.... .+...|..+...|...|++++|++
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHH
Confidence 77777777777777776654 3456677777778888888888888887764333 356677778888888888888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhc
Q 037256 402 FFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKL 444 (680)
Q Consensus 402 l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 444 (680)
.|+++.+.. +.+..++..+...+...|++++|...++++.+.
T Consensus 181 ~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 181 QFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 888887742 233557777777888888888888888887765
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.32 E-value=7e-11 Score=123.38 Aligned_cols=268 Identities=10% Similarity=-0.014 Sum_probs=203.9
Q ss_pred CCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----C----C
Q 037256 209 SDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLED---LCIQNSIVAMYARCGNVEKARLVFDMMEK-----R----D 276 (680)
Q Consensus 209 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~Li~~y~~~g~~~~A~~~f~~m~~-----~----~ 276 (680)
+....+......+...|++++|...+..+++...... ..++..+...|...|++++|...|++... . .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3445566677788899999999999999998753221 35788899999999999999999887642 1 2
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCC----HhhHHHHHHHHhhhcc--------------------hHHH
Q 037256 277 LISWNSMLTGYIQNGQASEALLLFDEMQNSDC-KPN----PVTALILVSACTYLGS--------------------RQLG 331 (680)
Q Consensus 277 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~--------------------~~~a 331 (680)
..+|..+...|...|++++|+..+++..+... .++ ..++..+...+...|+ ++.|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 45788888999999999999999998765310 012 3467778888899999 9999
Q ss_pred HHHHHHHHHc----CC-CCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCC---CCC----HhHHHHHHHHHHhcCChHHH
Q 037256 332 RKFHGYIINS----NM-KIDATLRNAVMDMYAKCGDLDTAENMFNDIHPS---ERN----VSSWNVLIAGYGMHGHGRKA 399 (680)
Q Consensus 332 ~~i~~~~~~~----~~-~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~---~~~----~~~~~~li~~~~~~g~~~~A 399 (680)
...+....+. +. +....++..+...|...|++++|.+.|++.... .++ ..+|..+...|...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 9888877542 11 122457788889999999999999999887322 222 33788889999999999999
Q ss_pred HHHHHHHHHc----CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhc----CCCc-ChHHHHHHHHHHHhcCCHHHH
Q 037256 400 LEFFSQMLEE----GVKPD-HITFTSILSACSHAGLIDEGRKCFADMTKL----SVKP-EVKHYACMVDMLGRAGCLYEA 469 (680)
Q Consensus 400 ~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A 469 (680)
...+++..+. +..+. ..++..+...+...|++++|...+++..+. +..+ ....+..+...|.+.|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999988753 11111 347778888899999999999999988764 1111 155778888999999999999
Q ss_pred HHHHHhC
Q 037256 470 FDMIKQM 476 (680)
Q Consensus 470 ~~~~~~m 476 (680)
.+.+++.
T Consensus 327 ~~~~~~a 333 (406)
T 3sf4_A 327 MHFAEKH 333 (406)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998864
No 62
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.31 E-value=1.2e-10 Score=107.13 Aligned_cols=165 Identities=15% Similarity=0.105 Sum_probs=137.9
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 037256 346 DATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPD-HITFTSILS 423 (680)
Q Consensus 346 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~ 423 (680)
+..+|..+...|.+.|++++|.+.|++.....| +..+|..+...|.+.|++++|+..+.+.... .|+ ...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHH
Confidence 567888899999999999999999998755454 5778888999999999999999999998884 444 446666777
Q ss_pred HHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHHHHHHHHH
Q 037256 424 ACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEIAANYL 503 (680)
Q Consensus 424 a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~~~~ 503 (680)
.+...++++.+...+.+..+.. +.+...+..+...|.+.|++++|++.+++ +
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~---------------------------~ 133 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEK---------------------------T 133 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH---------------------------H
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHH---------------------------H
Confidence 8888999999999999888763 45577788888999999999999888765 3
Q ss_pred HccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 037256 504 FQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNK 540 (680)
Q Consensus 504 ~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 540 (680)
++++|+++.++..++.+|.+.|++++|.+.+++..+.
T Consensus 134 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 134 ISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 5678999999999999999999999999999998764
No 63
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.30 E-value=2.7e-11 Score=127.02 Aligned_cols=268 Identities=14% Similarity=0.083 Sum_probs=180.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCC--C-Ch----hHHHHHHHHHHhCCCccHHHHHHHHHHHc----CC-CCCHhH
Q 037256 146 YVQAALVDMYAKCGQTDDGCKVFDEMSV--R-DL----VSWTVMITAYEQAEKPEEALILFQKTQQE----GL-LSDSVT 213 (680)
Q Consensus 146 ~~~~~Li~~~~~~g~~~~A~~~f~~~~~--~-~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~t 213 (680)
..+..+...+...|++++|...|++..+ + +. ..|..+...|...|++++|++.|++..+. +- +.....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 4455667788999999999999988752 2 33 47889999999999999999999988653 11 123345
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHcc-----CCCChhHHHHHHHHHHhcCC-----------------HHHHHHHHHh
Q 037256 214 IVSVASAVGQLGDVLKAQAVHGYAICNA-----FLEDLCIQNSIVAMYARCGN-----------------VEKARLVFDM 271 (680)
Q Consensus 214 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g-----~~~~~~~~~~Li~~y~~~g~-----------------~~~A~~~f~~ 271 (680)
+..+...+...|++++|...+..+++.. .+....++..+...|...|+ +++|.+.|++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 6777778888899999988888776542 11223456666667777777 6666666554
Q ss_pred cCC-----C----ChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcC
Q 037256 272 MEK-----R----DLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSN 342 (680)
Q Consensus 272 m~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~ 342 (680)
..+ . ...+|..+...|...|++++|+..|++..+.. + +.+
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~-----------------------------~~~ 257 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIA--R-----------------------------EFG 257 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--H-----------------------------HHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH--H-----------------------------hcC
Confidence 321 0 12344555555555666666655555544310 0 000
Q ss_pred C-CCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCC---C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHHc----C
Q 037256 343 M-KIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSE---R----NVSSWNVLIAGYGMHGHGRKALEFFSQMLEE----G 410 (680)
Q Consensus 343 ~-~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~---~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g 410 (680)
. .....++..+...|...|++++|.+.|++..... . ...++..+...|...|++++|...+++..+. +
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 0 0012356667777888888888888887663221 1 1457788888899999999999999888763 1
Q ss_pred CCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhc
Q 037256 411 VKPD-HITFTSILSACSHAGLIDEGRKCFADMTKL 444 (680)
Q Consensus 411 ~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 444 (680)
..+. ..++..+...+...|++++|.+.+++..+.
T Consensus 338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 1111 236777888899999999999999988764
No 64
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.28 E-value=4.7e-10 Score=112.63 Aligned_cols=246 Identities=11% Similarity=0.076 Sum_probs=157.8
Q ss_pred HHHHHHHHhcCC---CChhHHHHHHHHHH-------HcCCh-------hHHHHHHHHHHhCCCCC-CHhhHHHHHHHHhh
Q 037256 263 EKARLVFDMMEK---RDLISWNSMLTGYI-------QNGQA-------SEALLLFDEMQNSDCKP-NPVTALILVSACTY 324 (680)
Q Consensus 263 ~~A~~~f~~m~~---~~~~~~~~li~~~~-------~~g~~-------~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~ 324 (680)
+.|..+|++... .++..|..++..+. +.|++ ++|..+|++..+. +.| +...+..+...+..
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHh
Confidence 445555555543 34556666555554 34664 7777777777753 133 34466666777777
Q ss_pred hcchHHHHHHHHHHHHcCCCCchH-HHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHH-HhcCChHHHHH
Q 037256 325 LGSRQLGRKFHGYIINSNMKIDAT-LRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGY-GMHGHGRKALE 401 (680)
Q Consensus 325 ~g~~~~a~~i~~~~~~~~~~~~~~-~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~-~~~g~~~~A~~ 401 (680)
.|+++.|..+++.+++.. +.+.. +|..++..+.+.|++++|.++|++.....| +...|....... ...|+.++|.+
T Consensus 112 ~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 777777777777777643 12233 788888888888888888888888755433 334444333322 23688999999
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhc-CCCc--ChHHHHHHHHHHHhcCCHHHHHHHHHhC-
Q 037256 402 FFSQMLEEGVKPD-HITFTSILSACSHAGLIDEGRKCFADMTKL-SVKP--EVKHYACMVDMLGRAGCLYEAFDMIKQM- 476 (680)
Q Consensus 402 l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m- 476 (680)
+|++..+. .|+ ...|..++..+.+.|++++|..+|++..+. .++| ....|..++..+.+.|+.++|..+++++
T Consensus 191 ~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99888874 454 457777888888889999999999988886 3455 3667888888888889999998888876
Q ss_pred CCCCCHhHHHHHHHHHHHHHHHHHHHHHccCCCCCchHHHHH
Q 037256 477 PLPPNDSVWGALLLACRIHGEIAANYLFQLEPEHTGYFVLMS 518 (680)
Q Consensus 477 ~~~p~~~~~~~ll~a~~~~~~~~~~~~~~l~p~~~~~~~~l~ 518 (680)
...|+...-..+ ..+ ....+++.++|+++..+..|+
T Consensus 269 ~~~p~~~~~~~~-~~~-----~~r~~~l~~~P~~~~~ln~lg 304 (308)
T 2ond_A 269 TAFREEYEGKET-ALL-----VDRYKFMDLYPCSASELKALG 304 (308)
T ss_dssp HHTTTTTSSCHH-HHH-----HTTTCBTTBCSSCHHHHHTTT
T ss_pred HHcccccccchH-HHH-----HHHHHhcccCCCCHHHHHhcC
Confidence 223331110000 010 111245668888876665543
No 65
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.28 E-value=7.6e-11 Score=122.47 Aligned_cols=229 Identities=7% Similarity=0.075 Sum_probs=162.0
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhC----CCCC-CHhhHHHHHHHHhhhcchHHHHHHHHHHHHcC--C----CCchHHHH
Q 037256 283 MLTGYIQNGQASEALLLFDEMQNS----DCKP-NPVTALILVSACTYLGSRQLGRKFHGYIINSN--M----KIDATLRN 351 (680)
Q Consensus 283 li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~--~----~~~~~~~~ 351 (680)
....+...|++++|+..|++..+. +-.+ ...++..+...+...|+++.|...+....+.. . +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 444566677777777777776543 1111 22455666666777777777777776665421 1 11245677
Q ss_pred HHHHHHHHcCCHHHHHHHHhhcCCC---CCC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCCH-HHHH
Q 037256 352 AVMDMYAKCGDLDTAENMFNDIHPS---ERN----VSSWNVLIAGYGMHGHGRKALEFFSQMLEE----GVKPDH-ITFT 419 (680)
Q Consensus 352 ~li~~y~k~g~~~~A~~~f~~~~~~---~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~-~t~~ 419 (680)
.+...|...|++++|.+.|++.... .++ ..+++.+...|...|++++|++.|++..+. +..|+. .++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 7888889999999999888876322 122 247888899999999999999999988762 332444 4788
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhc----CCCcChHHHHHHHHHHHhcCC---HHHHHHHHHhCCCCCCHhHHHHHHHHH
Q 037256 420 SILSACSHAGLIDEGRKCFADMTKL----SVKPEVKHYACMVDMLGRAGC---LYEAFDMIKQMPLPPNDSVWGALLLAC 492 (680)
Q Consensus 420 ~ll~a~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~~~~~~~ll~a~ 492 (680)
.+...+...|++++|...+++..+. +-+.....+..+...|...|+ +++|+.++++.+..|
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~------------ 336 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYA------------ 336 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHH------------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHH------------
Confidence 8888999999999999999987764 222233445678888888888 888888888874321
Q ss_pred HHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 037256 493 RIHGEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKN 539 (680)
Q Consensus 493 ~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 539 (680)
.....+..++.+|...|++++|.+.+++..+
T Consensus 337 ----------------~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 337 ----------------DLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp ----------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1234677899999999999999999999865
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.28 E-value=4.8e-11 Score=120.75 Aligned_cols=271 Identities=14% Similarity=0.070 Sum_probs=167.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCC--C-C----hhHHHHHHHHHHhCCCccHHHHHHHHHHHc----CCCC-CHhHH
Q 037256 147 VQAALVDMYAKCGQTDDGCKVFDEMSV--R-D----LVSWTVMITAYEQAEKPEEALILFQKTQQE----GLLS-DSVTI 214 (680)
Q Consensus 147 ~~~~Li~~~~~~g~~~~A~~~f~~~~~--~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~ 214 (680)
.+......+...|++++|...|++..+ | + ...|..+...+...|++++|++.+++..+. +..| ....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 444556778899999999999988642 2 3 357889999999999999999999987643 1111 13345
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHccCC-CC----hhHHHHHHHHHHhcCC--------------------HHHHHHHH
Q 037256 215 VSVASAVGQLGDVLKAQAVHGYAICNAFL-ED----LCIQNSIVAMYARCGN--------------------VEKARLVF 269 (680)
Q Consensus 215 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~~Li~~y~~~g~--------------------~~~A~~~f 269 (680)
..+...+...|++++|...+...++.... ++ ..++..+...|...|+ +++|.+.+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 55556666666777766666665543211 11 2244445555555555 44444444
Q ss_pred HhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC-CHhhHHHHHHHHhhhcchHHHHHHHHHHHHc----CC-
Q 037256 270 DMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKP-NPVTALILVSACTYLGSRQLGRKFHGYIINS----NM- 343 (680)
Q Consensus 270 ~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~----~~- 343 (680)
++... ++ ...+..+ ....+..+...+...|+++.|...+....+. +.
T Consensus 167 ~~a~~------------------------~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 219 (338)
T 3ro2_A 167 EENLS------------------------LV---TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK 219 (338)
T ss_dssp HHHHH------------------------HH---HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHH------------------------HH---HhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCh
Confidence 43221 00 0001011 1123344444445555555555555444321 10
Q ss_pred CCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCC---CCC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC
Q 037256 344 KIDATLRNAVMDMYAKCGDLDTAENMFNDIHPS---ERN----VSSWNVLIAGYGMHGHGRKALEFFSQMLEE----GVK 412 (680)
Q Consensus 344 ~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~---~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~ 412 (680)
.....++..+...|.+.|++++|.+.|++.... ..+ ..++..+...|...|++++|...+++..+. +-.
T Consensus 220 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 299 (338)
T 3ro2_A 220 AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR 299 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc
Confidence 111336667778888888888888888776322 112 456778888899999999999999888753 111
Q ss_pred CC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhc
Q 037256 413 PD-HITFTSILSACSHAGLIDEGRKCFADMTKL 444 (680)
Q Consensus 413 p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 444 (680)
+. ..++..+...+...|++++|...+++..+.
T Consensus 300 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 300 IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 11 236777888899999999999999988764
No 67
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.27 E-value=1e-08 Score=112.79 Aligned_cols=419 Identities=9% Similarity=0.002 Sum_probs=286.7
Q ss_pred hhhhHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCCCC-CcchHHHHHHHHHhCCC---chHHHHHHHHHHhCC-CCC
Q 037256 34 TSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKS-YSFLWNTMIRAYANNGH---CVETLELYSTMRRSG-ISS 108 (680)
Q Consensus 34 ~~~~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~p 108 (680)
|...|..++....+ . +.++.|+.+|+.+...-| ....|..-+..-.+.|+ ++.+..+|++..... ..|
T Consensus 65 d~~~W~~yi~~~~~-~------~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~ 137 (679)
T 4e6h_A 65 DIFLYVKLLKHHVS-L------KQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNN 137 (679)
T ss_dssp CHHHHHHHHHHHHH-T------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCC
T ss_pred CHHHHHHHHHHHHh-c------CcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCC
Confidence 88889999998888 7 899999999999988888 56689999999999998 999999999998764 137
Q ss_pred CcccHHHHHHHHhccCCh--------HHHHHHHHHHHHh-CC-CCc-hhHHHHHHHHHH---------hcCChHHHHHHH
Q 037256 109 NSYTFPFVLKACASNSLI--------LEGKVVHGDIIRT-GF-LSD-SYVQAALVDMYA---------KCGQTDDGCKVF 168 (680)
Q Consensus 109 ~~~t~~~ll~~~~~~~~~--------~~a~~~~~~~~~~-g~-~~~-~~~~~~Li~~~~---------~~g~~~~A~~~f 168 (680)
+...|..-+.-..+.++. +...++|+..+.. |. .++ ...|...+.... ..++++.++++|
T Consensus 138 sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy 217 (679)
T 4e6h_A 138 DLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLY 217 (679)
T ss_dssp CHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHH
Confidence 777787777665554443 3455788877653 65 554 468888776644 234678999999
Q ss_pred hcCCC-C--Ch-hHH---HHHHHHHH----------hCCCccHHHHHHHHHHH--cCCC---------------C-----
Q 037256 169 DEMSV-R--DL-VSW---TVMITAYE----------QAEKPEEALILFQKTQQ--EGLL---------------S----- 209 (680)
Q Consensus 169 ~~~~~-~--~~-~~~---~~li~~~~----------~~g~~~~A~~~~~~m~~--~g~~---------------p----- 209 (680)
++... | +. ..| ..+...+. ...+++.|...+.++.. .++. |
T Consensus 218 ~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~ 297 (679)
T 4e6h_A 218 KTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEY 297 (679)
T ss_dssp HHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCC
T ss_pred HHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchh
Confidence 88764 2 11 223 22222210 01123344555554322 1111 1
Q ss_pred C---HhHHHHHHHHHhccC-------ChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHH-HHHHhcCC---C
Q 037256 210 D---SVTIVSVASAVGQLG-------DVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKAR-LVFDMMEK---R 275 (680)
Q Consensus 210 ~---~~t~~~ll~~~~~~~-------~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~-~~f~~m~~---~ 275 (680)
+ ...|...+.---..+ ..+....+|++++.. ++.+..+|-..+..+...|+.++|. ++|++... .
T Consensus 298 ~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~ 376 (679)
T 4e6h_A 298 DVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPN 376 (679)
T ss_dssp CHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCC
Confidence 1 123444443332222 123456778888876 3557888888888888999998996 99988754 3
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCC---------CCC------------HhhHHHHHHHHhhhcchHHHHHH
Q 037256 276 DLISWNSMLTGYIQNGQASEALLLFDEMQNSDC---------KPN------------PVTALILVSACTYLGSRQLGRKF 334 (680)
Q Consensus 276 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---------~p~------------~~t~~~ll~a~~~~g~~~~a~~i 334 (680)
+...|-..+...-+.|++++|.++|+++..... .|+ ...|...+....+.|..+.|+.+
T Consensus 377 s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~v 456 (679)
T 4e6h_A 377 SAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKI 456 (679)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 556688888888999999999999999876310 132 23577777777888999999999
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHHcC-CHHHHHHHHhhcCCC-CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 037256 335 HGYIINSNMKIDATLRNAVMDMYAKCG-DLDTAENMFNDIHPS-ERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVK 412 (680)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~li~~y~k~g-~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 412 (680)
+..+.+.-......+|.....+-.+++ +.+.|.++|+...+. ..+...|...+......|+.+.|..+|++.......
T Consensus 457 f~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 457 FGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISD 536 (679)
T ss_dssp HHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence 999987611222334444444444554 599999999988544 345677888888888899999999999999885322
Q ss_pred CC--HHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHh
Q 037256 413 PD--HITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGR 462 (680)
Q Consensus 413 p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 462 (680)
|. ...|...+.--...|+.+.+..+.+++.+. .|+......+++-|.-
T Consensus 537 ~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry~~ 586 (679)
T 4e6h_A 537 SHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKYKV 586 (679)
T ss_dssp TTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHTCB
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHhcC
Confidence 22 246777787778899999999999999986 3444455555666643
No 68
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.27 E-value=1.1e-08 Score=112.45 Aligned_cols=426 Identities=9% Similarity=0.032 Sum_probs=249.7
Q ss_pred ChHHHHHHhhhccCCCC-CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCC---hHHHHHH
Q 037256 57 EPNTARSLFNSIHNDKS-YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSL---ILEGKVV 132 (680)
Q Consensus 57 ~~~~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~---~~~a~~~ 132 (680)
...+.+..|+......| |..+|..++..+.+.+.++.+..+|+++... .+.....|..-+..-.+.++ ++.+.++
T Consensus 47 ~~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CCSCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 34555656666666667 8889999999999999999999999999886 34456677777777777888 9999999
Q ss_pred HHHHHHhCC-CCchhHHHHHHHHHHhcCCh--------HHHHHHHhcCC------CC-ChhHHHHHHHHHHh--------
Q 037256 133 HGDIIRTGF-LSDSYVQAALVDMYAKCGQT--------DDGCKVFDEMS------VR-DLVSWTVMITAYEQ-------- 188 (680)
Q Consensus 133 ~~~~~~~g~-~~~~~~~~~Li~~~~~~g~~--------~~A~~~f~~~~------~~-~~~~~~~li~~~~~-------- 188 (680)
|+..+.... .|++..|...+....+.++. +...++|+... .+ +...|...+.....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 999987641 37888888887766665554 33446776521 22 34578777765432
Q ss_pred -CCCccHHHHHHHHHHHcCCCCCHhHHH---HHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHH
Q 037256 189 -AEKPEEALILFQKTQQEGLLSDSVTIV---SVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEK 264 (680)
Q Consensus 189 -~g~~~~A~~~~~~m~~~g~~p~~~t~~---~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~ 264 (680)
+++.+.+..+|++.+......-..+|. ...... +. ..+..++... ..+++.
T Consensus 206 eq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~---~~-~~a~~~~~e~---------------------~~~y~~ 260 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDV---NQ-LTARRHIGEL---------------------SAQYMN 260 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHH---CT-TTHHHHHHHH---------------------HHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhc---Cc-chHHHHHHHh---------------------hHHHHH
Confidence 334667888888877421111112221 111111 00 0011111110 011222
Q ss_pred HHHHHHh-------cCC--------------C--------ChhHHHHHHHHHHHcC-------ChhHHHHHHHHHHhCCC
Q 037256 265 ARLVFDM-------MEK--------------R--------DLISWNSMLTGYIQNG-------QASEALLLFDEMQNSDC 308 (680)
Q Consensus 265 A~~~f~~-------m~~--------------~--------~~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~g~ 308 (680)
|...+.+ +.. | ....|...+.---.++ ..+.+..+|++.... .
T Consensus 261 Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~ 339 (679)
T 4e6h_A 261 ARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-V 339 (679)
T ss_dssp HHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-c
Confidence 2222221 000 0 0123444444322222 123345566666654 2
Q ss_pred CCCHhhHHHHHHHHhhhcchHHHH-HHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCC-----------
Q 037256 309 KPNPVTALILVSACTYLGSRQLGR-KFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPS----------- 376 (680)
Q Consensus 309 ~p~~~t~~~ll~a~~~~g~~~~a~-~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~----------- 376 (680)
+-+...|.....-+...|+.+.|. .+++..+.. ++.+...+-.++...-+.|+++.|.++|+++...
T Consensus 340 p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~ 418 (679)
T 4e6h_A 340 CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMED 418 (679)
T ss_dssp TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 335555666666666667777775 777777754 3456666777777777788888888887776321
Q ss_pred CCC------------HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc-CCHHHHHHHHHHhhh
Q 037256 377 ERN------------VSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHA-GLIDEGRKCFADMTK 443 (680)
Q Consensus 377 ~~~------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~-g~~~~a~~~~~~m~~ 443 (680)
.|+ ...|...+....+.|..+.|..+|.+..+.-..+....|......-.+. ++++.|..+|+...+
T Consensus 419 ~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk 498 (679)
T 4e6h_A 419 DPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLK 498 (679)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred cCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 121 2357777777777777888888888877641011122333222222233 447888888887777
Q ss_pred cCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HhHHHHHHHHHHHH-----HHHHHHHHHccCCCCC
Q 037256 444 LSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM-PLPPN----DSVWGALLLACRIH-----GEIAANYLFQLEPEHT 511 (680)
Q Consensus 444 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~a~~~~-----~~~~~~~~~~l~p~~~ 511 (680)
. ++-+...+...++.....|+.+.|..+|++. ...|+ ...|...+.-=..+ .....+++.+..|+++
T Consensus 499 ~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 499 Y-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp H-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred H-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 6 3344556667777777788888888888775 22232 24565555544444 4556667777888764
No 69
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.24 E-value=5.5e-11 Score=119.13 Aligned_cols=231 Identities=14% Similarity=0.109 Sum_probs=116.7
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHHHhC-------CCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHc------C
Q 037256 276 DLISWNSMLTGYIQNGQASEALLLFDEMQNS-------DCKPNPVTALILVSACTYLGSRQLGRKFHGYIINS------N 342 (680)
Q Consensus 276 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~------~ 342 (680)
+..+|..+...|...|++++|+.+|+++.+. ..+.....+..+...+...|++++|...+..+.+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3467788888888999999999998888752 11222334555555556666666666666555432 1
Q ss_pred C-CCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCCCH
Q 037256 343 M-KIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEE------GVKPDH 415 (680)
Q Consensus 343 ~-~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~~ 415 (680)
- +....++..+...|...|++++|.+.|+ +..+. +-.|+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~---------------------------------~a~~~~~~~~~~~~~~~ 152 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCK---------------------------------RALEIREKVLGKDHPDV 152 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHH---------------------------------HHHHHHHHHHCTTCHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHH---------------------------------HHHHHHHHhcCCCChHH
Confidence 1 1223344444455555555555555544 44432 111211
Q ss_pred -HHHHHHHHHHHccCCHHHHHHHHHHhhhc------CCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhCC----------
Q 037256 416 -ITFTSILSACSHAGLIDEGRKCFADMTKL------SVKP-EVKHYACMVDMLGRAGCLYEAFDMIKQMP---------- 477 (680)
Q Consensus 416 -~t~~~ll~a~~~~g~~~~a~~~~~~m~~~------~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~---------- 477 (680)
..+..+...+...|++++|.++++++.+. +..| ....+..+...|.+.|++++|.+.++++-
T Consensus 153 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 232 (311)
T 3nf1_A 153 AKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGS 232 (311)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 23444444444455555555544444432 1011 12334444445555555555554444430
Q ss_pred CCCCHhHHHHHHHHHHHH------------HHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 037256 478 LPPNDSVWGALLLACRIH------------GEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKN 539 (680)
Q Consensus 478 ~~p~~~~~~~ll~a~~~~------------~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 539 (680)
..|...........+... +...++......|.++..+..++.+|.+.|++++|.+.+++..+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 233 VDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -----CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 011111111111111111 12233344445677778899999999999999999999998765
No 70
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.23 E-value=4.4e-10 Score=103.21 Aligned_cols=162 Identities=17% Similarity=0.175 Sum_probs=82.1
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 037256 245 DLCIQNSIVAMYARCGNVEKARLVFDMMEK---RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSA 321 (680)
Q Consensus 245 ~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 321 (680)
+..+|..|...|.+.|++++|.+.|++..+ .++.+|..+...|.+.|++++|+..+.+..... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 344555566666666666666666665542 245556666666666666666666666655432 2233333344444
Q ss_pred HhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHH
Q 037256 322 CTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKAL 400 (680)
Q Consensus 322 ~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~ 400 (680)
+...++++.+...+....+.. +.+...+..+...|.+.|++++|.+.|++.....| +..+|..+...|.+.|++++|+
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH
Confidence 444455555555544444433 23344444445555555555555555554422222 3444455555555555555555
Q ss_pred HHHHHHHH
Q 037256 401 EFFSQMLE 408 (680)
Q Consensus 401 ~l~~~m~~ 408 (680)
+.|++..+
T Consensus 162 ~~~~~al~ 169 (184)
T 3vtx_A 162 KYFKKALE 169 (184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55555444
No 71
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.22 E-value=4e-10 Score=117.02 Aligned_cols=228 Identities=11% Similarity=-0.001 Sum_probs=103.4
Q ss_pred HHHHHHhCCCccHHHHHHHHHHHcCC-CCC----HhHHHHHHHHHhccCChHHHHHHHHHHHHccCCC------ChhHHH
Q 037256 182 MITAYEQAEKPEEALILFQKTQQEGL-LSD----SVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLE------DLCIQN 250 (680)
Q Consensus 182 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~------~~~~~~ 250 (680)
....+...|++++|++.|++..+.-. .+| ..++..+...+...|+++.|...+...++.-... ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 33445556666666666666544200 111 2234444445555555555555554444321100 122344
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 037256 251 SIVAMYARCGNVEKARLVFDMMEK-----RD----LISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSA 321 (680)
Q Consensus 251 ~Li~~y~~~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 321 (680)
.+...|...|++++|.+.|++..+ ++ ..++..+...|...|++++|++.|++..+..
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~-------------- 254 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVF-------------- 254 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--------------
Confidence 455555555555555555544331 11 1244445555555555555555555544310
Q ss_pred HhhhcchHHHHHHHHHHHHcCC-CCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCC-----CCC-HhHHHHHHHHHHhcC
Q 037256 322 CTYLGSRQLGRKFHGYIINSNM-KIDATLRNAVMDMYAKCGDLDTAENMFNDIHPS-----ERN-VSSWNVLIAGYGMHG 394 (680)
Q Consensus 322 ~~~~g~~~~a~~i~~~~~~~~~-~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~-----~~~-~~~~~~li~~~~~~g 394 (680)
.+.+. +....++..+...|.+.|++++|.+.|++.... .+. ...++.+...|...|
T Consensus 255 -----------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~ 317 (383)
T 3ulq_A 255 -----------------EESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGP 317 (383)
T ss_dssp -----------------HHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSC
T ss_pred -----------------HhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCC
Confidence 00011 222334444555555555555555555443211 111 112344455555555
Q ss_pred C---hHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhhh
Q 037256 395 H---GRKALEFFSQMLEEGVKPDHI-TFTSILSACSHAGLIDEGRKCFADMTK 443 (680)
Q Consensus 395 ~---~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~ 443 (680)
+ .++|+.++++. +..|+.. .+..+...|...|++++|...+++..+
T Consensus 318 ~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 318 DEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp CHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5 44555554443 2233322 444555566666666666666665544
No 72
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.21 E-value=2.7e-09 Score=107.05 Aligned_cols=163 Identities=9% Similarity=-0.020 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH-h-hHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHH
Q 037256 279 SWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNP-V-TALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDM 356 (680)
Q Consensus 279 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~-t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~ 356 (680)
.|..++..+.+.|++++|.++|++..+. .|+. . .|..+...+.+.|+++.|..+++.+++.. +.+..+|......
T Consensus 101 ~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~ 177 (308)
T 2ond_A 101 LYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALM 177 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 4444444444444444444444444432 2221 1 34444444444445555555554444432 1223333333222
Q ss_pred HH-HcCCHHHHHHHHhhcCCCC-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHccCCH
Q 037256 357 YA-KCGDLDTAENMFNDIHPSE-RNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEG-VKPD--HITFTSILSACSHAGLI 431 (680)
Q Consensus 357 y~-k~g~~~~A~~~f~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~--~~t~~~ll~a~~~~g~~ 431 (680)
.. ..|++++|.++|++..... .+...|..++..+.+.|+.++|..+|++..... +.|+ ...|..++......|+.
T Consensus 178 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~ 257 (308)
T 2ond_A 178 EYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 257 (308)
T ss_dssp HHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 22 2466666666666653332 245666666666667777777777777776642 3443 33566666666666777
Q ss_pred HHHHHHHHHhhhc
Q 037256 432 DEGRKCFADMTKL 444 (680)
Q Consensus 432 ~~a~~~~~~m~~~ 444 (680)
+.|..+++++.+.
T Consensus 258 ~~a~~~~~~a~~~ 270 (308)
T 2ond_A 258 ASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777766654
No 73
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.19 E-value=2.1e-10 Score=127.61 Aligned_cols=166 Identities=10% Similarity=0.221 Sum_probs=139.7
Q ss_pred CCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHH
Q 037256 344 KIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH-ITFTSI 421 (680)
Q Consensus 344 ~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~l 421 (680)
+.+...++.|...|.+.|++++|.+.|++..+..| +..+|+.+...|.+.|++++|++.|++.++ +.|+. ..|..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 33567788888999999999999999998855555 477889999999999999999999999988 56764 588888
Q ss_pred HHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHHHHHHH
Q 037256 422 LSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEIAAN 501 (680)
Q Consensus 422 l~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~~ 501 (680)
..++...|++++|.+.|++..+.. +-+...|..+..+|.+.|++++|++.+++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~-------------------------- 136 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRT-------------------------- 136 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH--------------------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH--------------------------
Confidence 889999999999999999988764 34577888899999999999998877764
Q ss_pred HHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 037256 502 YLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKN 539 (680)
Q Consensus 502 ~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 539 (680)
+++++|+++..+..|+.+|...|+|++|.+.+++..+
T Consensus 137 -Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 137 -ALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp -HHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred -HHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 4678899999999999999999999999998888653
No 74
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.17 E-value=4.1e-10 Score=120.28 Aligned_cols=201 Identities=12% Similarity=0.042 Sum_probs=108.4
Q ss_pred ChhHHHHHHHHHHhcCCH-HHHHHHHHhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 037256 245 DLCIQNSIVAMYARCGNV-EKARLVFDMMEK---RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVS 320 (680)
Q Consensus 245 ~~~~~~~Li~~y~~~g~~-~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 320 (680)
+...+..+...|...|++ ++|.+.|++..+ .+...|..+...|.+.|++++|++.|++..+. .|+...+..+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHH
Confidence 334444444444445555 555554444332 23445555666666666666666666665543 344444444444
Q ss_pred HHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhc------
Q 037256 321 ACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMH------ 393 (680)
Q Consensus 321 a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~------ 393 (680)
++...+.- ....+.|++++|.+.|++.....| +...|..+..+|...
T Consensus 179 ~~~~~~~~--------------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~ 232 (474)
T 4abn_A 179 VLRQLQTD--------------------------SGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQ 232 (474)
T ss_dssp HHTTCCCS--------------------------CHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhccC--------------------------ChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhcc
Confidence 44444000 000000444444444444422222 344555555555555
Q ss_pred --CChHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHH
Q 037256 394 --GHGRKALEFFSQMLEEGVKP----DHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLY 467 (680)
Q Consensus 394 --g~~~~A~~l~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 467 (680)
|++++|++.|++..+ +.| +...+..+..++...|++++|.+.|++..+.. +.+...+..+..++...|+++
T Consensus 233 ~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~ 309 (474)
T 4abn_A 233 NPKISQQALSAYAQAEK--VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLT 309 (474)
T ss_dssp CHHHHHHHHHHHHHHHH--HCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHH
Confidence 666777777777666 344 44566666667777777777777777766653 334455666677777777777
Q ss_pred HHHHHHHhC
Q 037256 468 EAFDMIKQM 476 (680)
Q Consensus 468 ~A~~~~~~m 476 (680)
+|++.+.++
T Consensus 310 eAi~~~~~~ 318 (474)
T 4abn_A 310 SLLESKGKT 318 (474)
T ss_dssp HHHHHTTTC
T ss_pred HHHHHhccc
Confidence 777766665
No 75
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.17 E-value=3.4e-10 Score=113.26 Aligned_cols=231 Identities=13% Similarity=0.069 Sum_probs=163.8
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--------C---ChhHHHHHHHHHHHcCChhHHHHHHHHHHhC------C
Q 037256 245 DLCIQNSIVAMYARCGNVEKARLVFDMMEK--------R---DLISWNSMLTGYIQNGQASEALLLFDEMQNS------D 307 (680)
Q Consensus 245 ~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g 307 (680)
+..++..+...|...|++++|...|+++.+ . ...++..+...|...|++++|...|++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 466788899999999999999999998764 2 3456888999999999999999999998764 2
Q ss_pred CCC-CHhhHHHHHHHHhhhcchHHHHHHHHHHHHc------CC-CCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCC---
Q 037256 308 CKP-NPVTALILVSACTYLGSRQLGRKFHGYIINS------NM-KIDATLRNAVMDMYAKCGDLDTAENMFNDIHPS--- 376 (680)
Q Consensus 308 ~~p-~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~------~~-~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~--- 376 (680)
-.| ...++..+...+...|++++|...+..+.+. +. +....++..+...|.+.|++++|.+.|++....
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 223 3557788888999999999999999998764 22 234567888899999999999999999887332
Q ss_pred -----CC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHc-------CCCCCHHHHH-------HHHHHHHccCCHHHHHH
Q 037256 377 -----ER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEE-------GVKPDHITFT-------SILSACSHAGLIDEGRK 436 (680)
Q Consensus 377 -----~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-------g~~p~~~t~~-------~ll~a~~~~g~~~~a~~ 436 (680)
.| ...+|..+...|...|++++|.+.++++.+. ...|...... .+...+...+.+.++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 22 2457888899999999999999999998863 1222222221 22222333444445555
Q ss_pred HHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256 437 CFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM 476 (680)
Q Consensus 437 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 476 (680)
.+....... +.....+..+...|.+.|++++|.+.+++.
T Consensus 266 ~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 304 (311)
T 3nf1_A 266 WYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAA 304 (311)
T ss_dssp --------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 555554432 445677888999999999999999998864
No 76
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.16 E-value=3.4e-09 Score=96.77 Aligned_cols=165 Identities=13% Similarity=0.064 Sum_probs=140.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037256 347 ATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSAC 425 (680)
Q Consensus 347 ~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 425 (680)
...+..+...|...|++++|.+.|+++....| +...|..+...|...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34566778889999999999999999866544 67788999999999999999999999999852 33556788888899
Q ss_pred HccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHHHHHHHHHHc
Q 037256 426 SHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEIAANYLFQ 505 (680)
Q Consensus 426 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~~~~~~ 505 (680)
...|++++|.+.++++.+.. +.+...+..+...+.+.|++++|.+.+++. ++
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~---------------------------~~ 138 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIA---------------------------LG 138 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------------------HH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHH---------------------------Hh
Confidence 99999999999999998764 456778888999999999999999888764 34
Q ss_pred cCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 037256 506 LEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNK 540 (680)
Q Consensus 506 l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 540 (680)
..|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 139 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 139 LRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 56778888999999999999999999999998764
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.13 E-value=4.3e-08 Score=101.06 Aligned_cols=260 Identities=12% Similarity=-0.009 Sum_probs=141.0
Q ss_pred HHHHhCCCccHHHHHHHHHHHcCCCCCHh----HHHHHHHHHhccCChHHHHHHHHHHHHccCC-CC----hhHHHHHHH
Q 037256 184 TAYEQAEKPEEALILFQKTQQEGLLSDSV----TIVSVASAVGQLGDVLKAQAVHGYAICNAFL-ED----LCIQNSIVA 254 (680)
Q Consensus 184 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~~Li~ 254 (680)
..+...|++++|...+++........+.. .+..+...+...|++++|...+....+.... .+ ..++..+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34445556666666665554432111111 2333334444555666665555555442111 11 122345556
Q ss_pred HHHhcCCHHHHHHHHHhcCC-------C----ChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC--C--CHhhHHHHH
Q 037256 255 MYARCGNVEKARLVFDMMEK-------R----DLISWNSMLTGYIQNGQASEALLLFDEMQNSDCK--P--NPVTALILV 319 (680)
Q Consensus 255 ~y~~~g~~~~A~~~f~~m~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~t~~~ll 319 (680)
.|...|++++|...+++..+ + ....+..+...+...|++++|...+++....... + ...++..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 66666777666666655432 1 1234455666677777777777777776543211 1 123455556
Q ss_pred HHHhhhcchHHHHHHHHHHHHcCCCCc-hHHHH-----HHHHHHHHcCCHHHHHHHHhhcCCCCCC-----HhHHHHHHH
Q 037256 320 SACTYLGSRQLGRKFHGYIINSNMKID-ATLRN-----AVMDMYAKCGDLDTAENMFNDIHPSERN-----VSSWNVLIA 388 (680)
Q Consensus 320 ~a~~~~g~~~~a~~i~~~~~~~~~~~~-~~~~~-----~li~~y~k~g~~~~A~~~f~~~~~~~~~-----~~~~~~li~ 388 (680)
..+...|++++|...++...+..-.++ ...+. ..+..+...|++++|...+++.....+. ...+..+..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 666677777777777766654311111 11111 2334466788888888888877544322 224556667
Q ss_pred HHHhcCChHHHHHHHHHHHHc----CCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhhh
Q 037256 389 GYGMHGHGRKALEFFSQMLEE----GVKPDHI-TFTSILSACSHAGLIDEGRKCFADMTK 443 (680)
Q Consensus 389 ~~~~~g~~~~A~~l~~~m~~~----g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~ 443 (680)
.+...|++++|...+++.... |..++.. .+..+..++...|+.++|...+++...
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 777778888888877776542 2112222 444555566777777777777776654
No 78
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.07 E-value=8.8e-09 Score=106.60 Aligned_cols=160 Identities=10% Similarity=0.008 Sum_probs=86.6
Q ss_pred HHHHHHHHhhhcchHHHHHHHHHHHHc----CCC-CchHHHHHHHHHHHHcCCHHHHHHHHhhcCC-----CCC-CHhHH
Q 037256 315 ALILVSACTYLGSRQLGRKFHGYIINS----NMK-IDATLRNAVMDMYAKCGDLDTAENMFNDIHP-----SER-NVSSW 383 (680)
Q Consensus 315 ~~~ll~a~~~~g~~~~a~~i~~~~~~~----~~~-~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~-----~~~-~~~~~ 383 (680)
+..+...+...|+++.|...+....+. +.+ ....+++.+...|...|++++|.+.|++... ..| ...++
T Consensus 185 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 264 (378)
T 3q15_A 185 LFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVL 264 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHH
Confidence 334444444444444444444444321 111 1223455566666666776666666665533 222 24456
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCC---CCCH-HHHHHHHHHHHccCC---HHHHHHHHHHhhhcCCCcChHHHHHH
Q 037256 384 NVLIAGYGMHGHGRKALEFFSQMLEEGV---KPDH-ITFTSILSACSHAGL---IDEGRKCFADMTKLSVKPEVKHYACM 456 (680)
Q Consensus 384 ~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~~-~t~~~ll~a~~~~g~---~~~a~~~~~~m~~~~~~p~~~~~~~l 456 (680)
..+...|.+.|++++|...+++..+... .|.. ..+..+...+...++ +++|..+++... ..+.....+..+
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~--~~~~~~~~~~~l 342 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN--LHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC--ChhHHHHHHHHH
Confidence 6666777777777777777777665321 1222 234444445556666 666666665521 112223455567
Q ss_pred HHHHHhcCCHHHHHHHHHhC
Q 037256 457 VDMLGRAGCLYEAFDMIKQM 476 (680)
Q Consensus 457 i~~~~~~g~~~~A~~~~~~m 476 (680)
...|...|++++|.+.+++.
T Consensus 343 a~~y~~~g~~~~A~~~~~~a 362 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKV 362 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 77777777777777777654
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.06 E-value=1.5e-08 Score=96.42 Aligned_cols=97 Identities=10% Similarity=-0.013 Sum_probs=47.7
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHH
Q 037256 276 DLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMD 355 (680)
Q Consensus 276 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 355 (680)
|+..|......+.+.|++++|+..|++..+...+++...+..+..++...|++++|...+....+.. +.+..++..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 4455666666666666666666666666654322444444444444444444444444444444332 223334444444
Q ss_pred HHHHcCCHHHHHHHHhhc
Q 037256 356 MYAKCGDLDTAENMFNDI 373 (680)
Q Consensus 356 ~y~k~g~~~~A~~~f~~~ 373 (680)
.|.+.|++++|.+.|++.
T Consensus 85 ~~~~~~~~~~A~~~~~~a 102 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEG 102 (228)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHH
Confidence 444444444444444443
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.05 E-value=3.6e-08 Score=101.65 Aligned_cols=259 Identities=12% Similarity=0.064 Sum_probs=182.5
Q ss_pred HHHHhccCChHHHHHHHHHHHHccCCCChh----HHHHHHHHHHhcCCHHHHHHHHHhcCC-----CCh----hHHHHHH
Q 037256 218 ASAVGQLGDVLKAQAVHGYAICNAFLEDLC----IQNSIVAMYARCGNVEKARLVFDMMEK-----RDL----ISWNSML 284 (680)
Q Consensus 218 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~----~~~~Li~~y~~~g~~~~A~~~f~~m~~-----~~~----~~~~~li 284 (680)
...+...|++++|...+...+......+.. +++.+...|...|++++|.+.+++... .+. .++..+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 344557899999999999988765333322 566777888999999999999887653 222 3356677
Q ss_pred HHHHHcCChhHHHHHHHHHHhC----CCC--CC-HhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCC----chHHHHHH
Q 037256 285 TGYIQNGQASEALLLFDEMQNS----DCK--PN-PVTALILVSACTYLGSRQLGRKFHGYIINSNMKI----DATLRNAV 353 (680)
Q Consensus 285 ~~~~~~g~~~~A~~~~~~m~~~----g~~--p~-~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~----~~~~~~~l 353 (680)
..+...|++++|...+++..+. +.. |. ...+..+...+...|++++|...+....+..... ....+..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 8889999999999999887642 222 32 3455667778888999999999998887643221 23567778
Q ss_pred HHHHHHcCCHHHHHHHHhhcCCC--CC-CHhHHH-----HHHHHHHhcCChHHHHHHHHHHHHcCCCCC---HHHHHHHH
Q 037256 354 MDMYAKCGDLDTAENMFNDIHPS--ER-NVSSWN-----VLIAGYGMHGHGRKALEFFSQMLEEGVKPD---HITFTSIL 422 (680)
Q Consensus 354 i~~y~k~g~~~~A~~~f~~~~~~--~~-~~~~~~-----~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll 422 (680)
...+...|++++|...+++.... .+ +...|. ..+..+...|++++|...+++.......++ ...+..+.
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence 88899999999999998876321 11 112222 233447788999999999988765322111 22456677
Q ss_pred HHHHccCCHHHHHHHHHHhhhc----CCCcCh-HHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256 423 SACSHAGLIDEGRKCFADMTKL----SVKPEV-KHYACMVDMLGRAGCLYEAFDMIKQM 476 (680)
Q Consensus 423 ~a~~~~g~~~~a~~~~~~m~~~----~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m 476 (680)
..+...|++++|...++..... |..++. ..+..+..++.+.|+.++|.+.+++.
T Consensus 261 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a 319 (373)
T 1hz4_A 261 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 319 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 7888899999999999887654 322233 36667778888999999998888765
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.05 E-value=9.5e-09 Score=93.70 Aligned_cols=160 Identities=14% Similarity=0.088 Sum_probs=90.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhh
Q 037256 248 IQNSIVAMYARCGNVEKARLVFDMMEK---RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTY 324 (680)
Q Consensus 248 ~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 324 (680)
.+..+...|...|++++|...|+++.+ .+...|..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 455566677777788888877777764 255667777777777777777777777776542 2233344444444444
Q ss_pred hcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHH
Q 037256 325 LGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFS 404 (680)
Q Consensus 325 ~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 404 (680)
.|++++|...++.+.+.. ..+...|..+...|...|++++|.+.++
T Consensus 89 ~~~~~~A~~~~~~~~~~~----------------------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 134 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEAN----------------------------------PINFNVRFRLGVALDNLGRFDEAIDSFK 134 (186)
T ss_dssp HTCHHHHHHHHHHHHHHC----------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC----------------------------------cHhHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 444444444444444332 2234445555555555555555555555
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhh
Q 037256 405 QMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTK 443 (680)
Q Consensus 405 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 443 (680)
++.+.. +.+...+..+...+...|++++|...++.+.+
T Consensus 135 ~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 135 IALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555531 12234555555555555666666665555544
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.05 E-value=2.9e-08 Score=94.43 Aligned_cols=188 Identities=8% Similarity=-0.022 Sum_probs=98.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHhhcCCCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHH
Q 037256 347 ATLRNAVMDMYAKCGDLDTAENMFNDIHPSE--RNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHI-TFTSILS 423 (680)
Q Consensus 347 ~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~ 423 (680)
+..+......|.+.|++++|.+.|++..... ++...|..+...|...|++++|++.|++..+ ..|+.. .+..+..
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHHH
Confidence 3444445555555555555555555543222 3444444455555556666666666665555 344432 4555555
Q ss_pred HHHccCCHHHHHHHHHHhhhcCCCcCh-------HHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HhHHHHHHHHH
Q 037256 424 ACSHAGLIDEGRKCFADMTKLSVKPEV-------KHYACMVDMLGRAGCLYEAFDMIKQM-PLPPN---DSVWGALLLAC 492 (680)
Q Consensus 424 a~~~~g~~~~a~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~~~ll~a~ 492 (680)
.+...|++++|...+++..+.. +.+. ..|..+...+.+.|++++|++.+++. ...|+ ...|..+-..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 5566666666666666555532 1122 33555555666666666666666654 44554 23344444444
Q ss_pred HHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 037256 493 RIHGEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKN 539 (680)
Q Consensus 493 ~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 539 (680)
...|....+++..+.+.++..|.. ......+.+++|...+++..+
T Consensus 164 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 164 YNNGADVLRKATPLASSNKEKYAS--EKAKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHHHHHHHHHHGGGTTTCHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCHHHHHH--HHHHHHHHHHHHHHHHHHHhh
Confidence 444555556666665554333322 223344556666666666654
No 83
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.05 E-value=1.3e-09 Score=107.28 Aligned_cols=192 Identities=14% Similarity=0.126 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHhhcCCC--------CC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHc------CCC
Q 037256 348 TLRNAVMDMYAKCGDLDTAENMFNDIHPS--------ER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEE------GVK 412 (680)
Q Consensus 348 ~~~~~li~~y~k~g~~~~A~~~f~~~~~~--------~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~ 412 (680)
.++..+...|...|++++|...|++.... .| ...+|..+...|...|++++|++.|++..+. .-.
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 123 (283)
T 3edt_B 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34444445555555555555555443211 11 1334555555555566666666655555542 111
Q ss_pred CC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhc------C-CCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-C------
Q 037256 413 PD-HITFTSILSACSHAGLIDEGRKCFADMTKL------S-VKPEVKHYACMVDMLGRAGCLYEAFDMIKQM-P------ 477 (680)
Q Consensus 413 p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~------~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~------ 477 (680)
|+ ..++..+...+...|++++|..+++++.+. + .+.....+..+...|.+.|++++|.+.+++. .
T Consensus 124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 203 (283)
T 3edt_B 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKE 203 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 22 234555555566666666666666655543 1 1112344555566666666666666665544 0
Q ss_pred ---CCCCHhHHHHHHHHHHHH------------HHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 037256 478 ---LPPNDSVWGALLLACRIH------------GEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKN 539 (680)
Q Consensus 478 ---~~p~~~~~~~ll~a~~~~------------~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 539 (680)
..|........+..+... +....+......|..+..+..++.+|...|++++|.+.+++..+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 204 FGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp SSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 112211111111111111 01111111123355556788999999999999999999998865
No 84
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.04 E-value=2.7e-08 Score=102.89 Aligned_cols=126 Identities=10% Similarity=0.065 Sum_probs=64.2
Q ss_pred HHHHHHHHhhhcchHHHHHHHHHHHH----cCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCC-----CCC-HhHHH
Q 037256 315 ALILVSACTYLGSRQLGRKFHGYIIN----SNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPS-----ERN-VSSWN 384 (680)
Q Consensus 315 ~~~ll~a~~~~g~~~~a~~i~~~~~~----~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~-----~~~-~~~~~ 384 (680)
+..+...+...|++++|...+....+ .+.+....++..+...|.+.|++++|...|++.... .+. ...++
T Consensus 225 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 304 (378)
T 3q15_A 225 LLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFL 304 (378)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34444444444555555544444433 121223455555666666666666666666654211 111 22344
Q ss_pred HHHHHHHhcCC---hHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhhh
Q 037256 385 VLIAGYGMHGH---GRKALEFFSQMLEEGVKPDH-ITFTSILSACSHAGLIDEGRKCFADMTK 443 (680)
Q Consensus 385 ~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 443 (680)
.+...|...|+ ..+|+..+++ .+..|+. ..+..+...|...|++++|...|++..+
T Consensus 305 ~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 305 FLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44455555565 5555555554 2233333 2445566666777777777777766654
No 85
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.97 E-value=7.4e-09 Score=115.20 Aligned_cols=161 Identities=13% Similarity=0.052 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 037256 279 SWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYA 358 (680)
Q Consensus 279 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~ 358 (680)
+|+.|...|.+.|++++|++.|++..+.. +-+..++..+..++.+.|++++|.+.++.+++.. +.+...++.+..+|.
T Consensus 11 al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~l~ 88 (723)
T 4gyw_A 11 SLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLK 88 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34444444444444444444444444321 1123334444444444444444444444444433 234455555666666
Q ss_pred HcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHH
Q 037256 359 KCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH-ITFTSILSACSHAGLIDEGRK 436 (680)
Q Consensus 359 k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~ 436 (680)
+.|++++|.+.|++..+..| +..+|+.+...|.+.|++++|++.|++..+ +.|+. ..+..+..++...|++++|.+
T Consensus 89 ~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~--l~P~~~~a~~~L~~~l~~~g~~~~A~~ 166 (723)
T 4gyw_A 89 EMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALK--LKPDFPDAYCNLAHCLQIVCDWTDYDE 166 (723)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCCTTHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHhhhhhHHHhcccHHHHHH
Confidence 66666666666665533333 355666666666666666666666666666 44543 356666666666666666666
Q ss_pred HHHHhhh
Q 037256 437 CFADMTK 443 (680)
Q Consensus 437 ~~~~m~~ 443 (680)
.++++.+
T Consensus 167 ~~~kal~ 173 (723)
T 4gyw_A 167 RMKKLVS 173 (723)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655543
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.94 E-value=7.2e-09 Score=101.78 Aligned_cols=214 Identities=13% Similarity=0.060 Sum_probs=142.5
Q ss_pred HHHHHHHHHhcCCC----ChhHHHHHHHHHHHcCChhHHHHHHHHHHhC------CCCC-CHhhHHHHHHHHhhhcchHH
Q 037256 262 VEKARLVFDMMEKR----DLISWNSMLTGYIQNGQASEALLLFDEMQNS------DCKP-NPVTALILVSACTYLGSRQL 330 (680)
Q Consensus 262 ~~~A~~~f~~m~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~~~ll~a~~~~g~~~~ 330 (680)
+++|.++++++..+ ...+|..+...|...|++++|+..|++..+. +-.| ...++..+...+...|++++
T Consensus 24 ~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 103 (283)
T 3edt_B 24 CKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKE 103 (283)
T ss_dssp HHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHH
Confidence 44455555554332 3567888899999999999999999998754 2223 34577888888999999999
Q ss_pred HHHHHHHHHHc------C-CCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCC--------CC-CHhHHHHHHHHHHhcC
Q 037256 331 GRKFHGYIINS------N-MKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPS--------ER-NVSSWNVLIAGYGMHG 394 (680)
Q Consensus 331 a~~i~~~~~~~------~-~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~--------~~-~~~~~~~li~~~~~~g 394 (680)
|...+..+.+. . .+....++..+...|...|++++|.+.|++.... .| ...++..+...|...|
T Consensus 104 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 183 (283)
T 3edt_B 104 AEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQG 183 (283)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC
Confidence 99999888764 1 1334677788888999999999999988877332 22 2457788888899999
Q ss_pred ChHHHHHHHHHHHHc-------CCCCCHH-HHHHHHHHHHccCC------HHHHHHHHHHhhhcCCCcChHHHHHHHHHH
Q 037256 395 HGRKALEFFSQMLEE-------GVKPDHI-TFTSILSACSHAGL------IDEGRKCFADMTKLSVKPEVKHYACMVDML 460 (680)
Q Consensus 395 ~~~~A~~l~~~m~~~-------g~~p~~~-t~~~ll~a~~~~g~------~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 460 (680)
++++|...+++..+. ...|... .+..+.......+. +..+...++.... ..+.....+..+...|
T Consensus 184 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~la~~~ 262 (283)
T 3edt_B 184 KYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTVNTTLRSLGALY 262 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHH
Confidence 999999999988763 1233333 23333222222222 2333333322221 1123355788889999
Q ss_pred HhcCCHHHHHHHHHhC
Q 037256 461 GRAGCLYEAFDMIKQM 476 (680)
Q Consensus 461 ~~~g~~~~A~~~~~~m 476 (680)
.+.|++++|.+++++.
T Consensus 263 ~~~g~~~~A~~~~~~a 278 (283)
T 3edt_B 263 RRQGKLEAAHTLEDCA 278 (283)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHH
Confidence 9999999999998864
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.88 E-value=5.6e-08 Score=96.47 Aligned_cols=34 Identities=15% Similarity=0.124 Sum_probs=22.7
Q ss_pred ChHHHHHHHhcCCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHH
Q 037256 160 QTDDGCKVFDEMSVRDLVSWTVMITAYEQAEKPEEALILFQKTQQ 204 (680)
Q Consensus 160 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 204 (680)
++++|...|++ ....|...|++++|++.|.+..+
T Consensus 32 ~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~al~ 65 (292)
T 1qqe_A 32 KFEEAADLCVQ-----------AATIYRLRKELNLAGDSFLKAAD 65 (292)
T ss_dssp HHHHHHHHHHH-----------HHHHHHHTTCTHHHHHHHHHHHH
T ss_pred cHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHHHH
Confidence 46777666554 35667777777777777776644
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.87 E-value=6.2e-08 Score=96.16 Aligned_cols=165 Identities=10% Similarity=0.016 Sum_probs=103.3
Q ss_pred hHHHHHHHHhhhcchHHHHHHHHHHHHc----CCC-CchHHHHHHHHHHHHc-CCHHHHHHHHhhcCCCCC---C----H
Q 037256 314 TALILVSACTYLGSRQLGRKFHGYIINS----NMK-IDATLRNAVMDMYAKC-GDLDTAENMFNDIHPSER---N----V 380 (680)
Q Consensus 314 t~~~ll~a~~~~g~~~~a~~i~~~~~~~----~~~-~~~~~~~~li~~y~k~-g~~~~A~~~f~~~~~~~~---~----~ 380 (680)
++..+..++...|++++|...++..++. |-. ....+++.+..+|.+. |++++|...|++.....| + .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 3444444444444444444444444321 100 0134566777888885 888888888887633222 1 3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcCh----
Q 037256 381 SSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHI------TFTSILSACSHAGLIDEGRKCFADMTKLSVKPEV---- 450 (680)
Q Consensus 381 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~---- 450 (680)
.+|+.+...|.+.|++++|+..|++..+........ ++..+..++...|++++|...|++..+. .|+.
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~ 236 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSR 236 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcH
Confidence 467888888999999999999999988843222211 4566777788889999999999988764 2321
Q ss_pred --HHHHHHHHHHH--hcCCHHHHHHHHHhC-CCCC
Q 037256 451 --KHYACMVDMLG--RAGCLYEAFDMIKQM-PLPP 480 (680)
Q Consensus 451 --~~~~~li~~~~--~~g~~~~A~~~~~~m-~~~p 480 (680)
..+..++..+. ..+++++|++.|+++ .+.|
T Consensus 237 ~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~ 271 (292)
T 1qqe_A 237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (292)
T ss_dssp -HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHH
Confidence 12344555554 467788999999776 3443
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.86 E-value=5.2e-07 Score=88.13 Aligned_cols=246 Identities=8% Similarity=-0.020 Sum_probs=155.1
Q ss_pred HHhcCCHHHHHHHHHhcCCCC-hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHH
Q 037256 256 YARCGNVEKARLVFDMMEKRD-LISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKF 334 (680)
Q Consensus 256 y~~~g~~~~A~~~f~~m~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i 334 (680)
..=.|++..+..-...+...+ ...-.-+.++|...|+++.. ..-.|....+..+.. |...+ +...
T Consensus 23 ~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~----a~~~ 88 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK----NIEE 88 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT----CCHH
T ss_pred HHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc----HHHH
Confidence 334577777666555543322 22223345677777776531 112333333333322 22222 5566
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 037256 335 HGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER---NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGV 411 (680)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 411 (680)
++.....+ .++......+..+|...|++++|++++.+.....| +...+-.++..|.+.|+.+.|.+.+++|.+ .
T Consensus 89 l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~ 165 (310)
T 3mv2_B 89 LENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--A 165 (310)
T ss_dssp HHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred HHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--c
Confidence 66655554 44555556788899999999999999998744443 566788888999999999999999999988 5
Q ss_pred CC-----CHHHHHHHHHHH--HccC--CHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 037256 412 KP-----DHITFTSILSAC--SHAG--LIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM-PLPPN 481 (680)
Q Consensus 412 ~p-----~~~t~~~ll~a~--~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 481 (680)
.| +..+...+..++ ...| ++++|..+|+++.+. .|+...-..+..++.+.|++++|.+.++.+ ...|+
T Consensus 166 ~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~ 243 (310)
T 3mv2_B 166 IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYS 243 (310)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHH
T ss_pred CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 77 356666666663 3334 899999999998765 344333334444788999999999888754 11000
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 037256 482 DSVWGALLLACRIHGEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNK 540 (680)
Q Consensus 482 ~~~~~~ll~a~~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 540 (680)
.. .--..+|+|+.++..++.+....|+ +|.++++++.+.
T Consensus 244 ~~------------------~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 244 VE------------------QKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp TT------------------TCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred cc------------------ccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 00 0000146777777777777777776 778888888764
No 90
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.86 E-value=7.3e-09 Score=91.47 Aligned_cols=145 Identities=10% Similarity=0.073 Sum_probs=108.0
Q ss_pred HHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCC
Q 037256 353 VMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH-ITFTSILSACSHAGL 430 (680)
Q Consensus 353 li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~ 430 (680)
|..++...|++++|.+.|+...+..| +...+-.+...|.+.|++++|++.|++.++ +.|+. .+|..+..++...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCc
Confidence 44556667888888888888755544 355677788888899999999999998888 56654 578888888888899
Q ss_pred HHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHHHHHHHHHHccCCCC
Q 037256 431 IDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEIAANYLFQLEPEH 510 (680)
Q Consensus 431 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~~~~~~l~p~~ 510 (680)
+++|...|++..+.. +-+...|..+...|.+.|++++|.+.+ ++++++++|++
T Consensus 81 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~--------------------------~~~al~l~P~~ 133 (150)
T 4ga2_A 81 TDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYW--------------------------VERAAKLFPGS 133 (150)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHH--------------------------HHHHHHHSTTC
T ss_pred hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHH--------------------------HHHHHHhCcCC
Confidence 999999998888753 335677888888888888877654432 23456788988
Q ss_pred CchHHHHHHHHHhcCC
Q 037256 511 TGYFVLMSNIYAASNK 526 (680)
Q Consensus 511 ~~~~~~l~~~~~~~g~ 526 (680)
+.+|.....++...|+
T Consensus 134 ~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 134 PAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHhCc
Confidence 8888888888887775
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.83 E-value=2.5e-07 Score=90.39 Aligned_cols=176 Identities=13% Similarity=0.105 Sum_probs=112.7
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCC-CCchHHHHHHHHHHHHcCCHHHHHHHHhhcC
Q 037256 296 ALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNM-KIDATLRNAVMDMYAKCGDLDTAENMFNDIH 374 (680)
Q Consensus 296 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~-~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~ 374 (680)
|+..|++....+ .++..++..+..++...|++++|.+++...+..+. .-+...+..++..|.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566666665544 44555555666666777777777777766655442 2356666777888888888888888888874
Q ss_pred CCCC-----CHhHHHHHHHH--HHhcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhc-
Q 037256 375 PSER-----NVSSWNVLIAG--YGMHG--HGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKL- 444 (680)
Q Consensus 375 ~~~~-----~~~~~~~li~~--~~~~g--~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~- 444 (680)
...| +..+...|..+ ....| ++.+|..+|+++.+ -.|+..+-..++.++.+.|++++|.+.++.+.+.
T Consensus 164 ~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~--~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 164 NAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQ--TFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT--TSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred hcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH--hCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 4456 24444455544 22223 78888888888866 3566444445555788888888888888866543
Q ss_pred -C-------CCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256 445 -S-------VKPEVKHYACMVDMLGRAGCLYEAFDMIKQM 476 (680)
Q Consensus 445 -~-------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 476 (680)
. -+.+..+...+|......|+ +|.++++++
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL 279 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQL 279 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHH
Confidence 1 13355566555555555665 666666655
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.81 E-value=1.7e-07 Score=91.16 Aligned_cols=190 Identities=11% Similarity=0.015 Sum_probs=119.3
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC-HHHHH
Q 037256 346 DATLRNAVMDMYAKCGDLDTAENMFNDIHPSERN----VSSWNVLIAGYGMHGHGRKALEFFSQMLEEGV-KPD-HITFT 419 (680)
Q Consensus 346 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~-~~t~~ 419 (680)
+...+-.+...+.+.|++++|...|+++....|+ ...+..+..+|.+.|++++|+..|++..+... .|+ ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 4445555566666777777777777776444443 45566666677777777777777777776321 112 22445
Q ss_pred HHHHHHHc--------cCCHHHHHHHHHHhhhcCCCcChHHH-----------------HHHHHHHHhcCCHHHHHHHHH
Q 037256 420 SILSACSH--------AGLIDEGRKCFADMTKLSVKPEVKHY-----------------ACMVDMLGRAGCLYEAFDMIK 474 (680)
Q Consensus 420 ~ll~a~~~--------~g~~~~a~~~~~~m~~~~~~p~~~~~-----------------~~li~~~~~~g~~~~A~~~~~ 474 (680)
.+..++.. .|++++|...|+++.+.. +.+.... ..+...|.+.|++++|+..++
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 172 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYE 172 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 55555666 677777777777776642 1111122 455677788888888887776
Q ss_pred hCCCCCCHhHHHHHHHHHHHHHHHHHHHHHccCCCC---CchHHHHHHHHHhc----------CChhHHHHHHHHHHhCC
Q 037256 475 QMPLPPNDSVWGALLLACRIHGEIAANYLFQLEPEH---TGYFVLMSNIYAAS----------NKWREVGKLREDMKNKG 541 (680)
Q Consensus 475 ~m~~~p~~~~~~~ll~a~~~~~~~~~~~~~~l~p~~---~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~g 541 (680)
++ ++..|++ +..+..++.+|... |++++|...++++.+..
T Consensus 173 ~~---------------------------l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 173 AV---------------------------FDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HH---------------------------HHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HH---------------------------HHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 64 3444553 34677888888766 99999999999998642
Q ss_pred CCCCCceeEEEECCEEEEEEeCCCCCcccHHHHHHHHHHHHHHHH
Q 037256 542 LKKPAAFSVIEYGKDIQGFHTADRVNPYWKEVYKKVESMAVEIKM 586 (680)
Q Consensus 542 ~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~~~~l~~~m~~ 586 (680)
. .+|...+....+.++...+.+
T Consensus 226 p-----------------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 226 P-----------------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp T-----------------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred C-----------------------CChHHHHHHHHHHHHHHHHHH
Confidence 1 234555656666666666543
No 93
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.79 E-value=1.6e-07 Score=80.21 Aligned_cols=129 Identities=16% Similarity=0.263 Sum_probs=76.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHH
Q 037256 382 SWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLG 461 (680)
Q Consensus 382 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 461 (680)
.|..+...|...|++++|+.+++++.+.. +.+...+..+...+...|++++|..+++++.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 34555556666666666666666666532 2233455555566666666666666666665543 334455566666666
Q ss_pred hcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 037256 462 RAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKN 539 (680)
Q Consensus 462 ~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 539 (680)
+.|++++|.+.++++ ++..|+++..+..++.+|...|++++|.+.++++.+
T Consensus 81 ~~~~~~~A~~~~~~~---------------------------~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKA---------------------------LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHH---------------------------HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHH---------------------------HHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 666666666666543 123444555566666666677777777776666654
No 94
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.79 E-value=1.7e-06 Score=92.19 Aligned_cols=194 Identities=13% Similarity=0.110 Sum_probs=87.4
Q ss_pred HHHHHHhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHc
Q 037256 265 ARLVFDMMEK---RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINS 341 (680)
Q Consensus 265 A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~ 341 (680)
+..+|+++.. .+...|-..+.-+.+.|+.++|..+|++.... |+...+.. .++.....+. +++.+.+.
T Consensus 198 v~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~---~~~~l~~~ 268 (493)
T 2uy1_A 198 MHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEA---VYGDLKRK 268 (493)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTH---HHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhH---HHHHHHHH
Confidence 4445555432 24556666666677777777777777777765 43332221 1111111111 11111111
Q ss_pred CC------------CCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHH--HHHHHHHhcCChHHHHHHHHHHH
Q 037256 342 NM------------KIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWN--VLIAGYGMHGHGRKALEFFSQML 407 (680)
Q Consensus 342 ~~------------~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~--~li~~~~~~g~~~~A~~l~~~m~ 407 (680)
-. .....+|...++.+.+.+.++.|..+|++...+..+...|- +.+... ..++.+.|..+|+...
T Consensus 269 ~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~-~~~d~~~ar~ife~al 347 (493)
T 2uy1_A 269 YSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYY-ATGSRATPYNIFSSGL 347 (493)
T ss_dssp TC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHH-HHCCSHHHHHHHHHHH
T ss_pred HHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHH-HCCChHHHHHHHHHHH
Confidence 00 00123444445555555556666666665511111222222 111111 1224555666666555
Q ss_pred HcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHh
Q 037256 408 EEGVKPD-HITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQ 475 (680)
Q Consensus 408 ~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 475 (680)
+.- |+ ...+...+.-..+.|+.+.|..+|+.+. .....|...++.=...|+.+.+.+++++
T Consensus 348 ~~~--~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~ 409 (493)
T 2uy1_A 348 LKH--PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQ 409 (493)
T ss_dssp HHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 531 22 2223333444445555555666655542 1344555555544555555555555544
No 95
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.78 E-value=1.5e-07 Score=80.38 Aligned_cols=128 Identities=19% Similarity=0.281 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 037256 279 SWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYA 358 (680)
Q Consensus 279 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~ 358 (680)
.|..+...+...|++++|..+|+++.+.. +.+...+..+...+...|+++.|...++.+.+.+ +.+...+..+...|.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 35556666666667777777666665532 2233444444444444444555544444444332 223334444444444
Q ss_pred HcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 037256 359 KCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLE 408 (680)
Q Consensus 359 k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 408 (680)
+.|++++|.+.|+++....| +...|..+...|...|++++|...++++.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 44455554444444422221 233444444444444444445444444443
No 96
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.75 E-value=2.9e-05 Score=82.69 Aligned_cols=350 Identities=12% Similarity=0.040 Sum_probs=180.7
Q ss_pred hHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCCCCCcchHHHHHHHHHhCCC-chHHHHHHHHHHhC-CCCC-CcccH
Q 037256 37 LINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKSYSFLWNTMIRAYANNGH-CVETLELYSTMRRS-GISS-NSYTF 113 (680)
Q Consensus 37 ~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~-g~~p-~~~t~ 113 (680)
+|...+..|-. |+++.|..+|+.....-|++..|...+.-..+.+. .+....+|+..... |..| +...|
T Consensus 17 vyer~l~~~P~--------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW 88 (493)
T 2uy1_A 17 IMEHARRLYMS--------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLY 88 (493)
T ss_dssp HHHHHHHHHHT--------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHH
T ss_pred HHHHHHHHCCC--------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHH
Confidence 34444555555 88999999999998888888899888887766653 45577788877653 4333 44556
Q ss_pred HHHHHHHh----ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-------------cCChHHHHHHHhcCC----
Q 037256 114 PFVLKACA----SNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAK-------------CGQTDDGCKVFDEMS---- 172 (680)
Q Consensus 114 ~~ll~~~~----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~-------------~g~~~~A~~~f~~~~---- 172 (680)
...+..+. ..++++.++.+|+..++.....-...|......-.. .+.+..|+.+++.+.
T Consensus 89 ~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~ 168 (493)
T 2uy1_A 89 KEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIR 168 (493)
T ss_dssp HHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 66665443 235677889999998874221112223222211100 012222333332221
Q ss_pred CCChhHHHHHHHHHHhCCC-------ccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCC
Q 037256 173 VRDLVSWTVMITAYEQAEK-------PEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLED 245 (680)
Q Consensus 173 ~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 245 (680)
..+...|...+.--...+. .+.+..+|++++... +.+...|...+.-+...|+.+.|..+++..++. +.+
T Consensus 169 ~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~ 245 (493)
T 2uy1_A 169 GWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDG 245 (493)
T ss_dssp TCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCS
T ss_pred hccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCc
Confidence 1133456555554332211 233566777777642 344566666666677778888888888888877 334
Q ss_pred hhHHHHHHHHHHhcCCHHHH-HHHHHhcC------------CCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH
Q 037256 246 LCIQNSIVAMYARCGNVEKA-RLVFDMME------------KRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNP 312 (680)
Q Consensus 246 ~~~~~~Li~~y~~~g~~~~A-~~~f~~m~------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 312 (680)
...+. .|+...+.++. ..+.+... ......|...+....+.++.+.|..+|.+. +.. ..+.
T Consensus 246 ~~l~~----~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~ 319 (493)
T 2uy1_A 246 MFLSL----YYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGP 319 (493)
T ss_dssp SHHHH----HHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCH
T ss_pred HHHHH----HHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCCh
Confidence 33332 22222111111 11111110 001133555555555556666666666666 211 1222
Q ss_pred hhHHHHHHHHhhhc-chHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHH
Q 037256 313 VTALILVSACTYLG-SRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYG 391 (680)
Q Consensus 313 ~t~~~ll~a~~~~g-~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~ 391 (680)
..|......-...+ +.+.|+.+++...+.. +.++..+...++...+.|+.+.|..+|+++. .....|...+.-=.
T Consensus 320 ~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~---k~~~lw~~~~~fE~ 395 (493)
T 2uy1_A 320 HVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE---KTSRMWDSMIEYEF 395 (493)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC---CBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 22221111111122 4666666666665543 2233445555666666666666666666651 23444555554444
Q ss_pred hcCChHHHHHHHHHHH
Q 037256 392 MHGHGRKALEFFSQML 407 (680)
Q Consensus 392 ~~g~~~~A~~l~~~m~ 407 (680)
..|+.+.+.++++++.
T Consensus 396 ~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 396 MVGSMELFRELVDQKM 411 (493)
T ss_dssp HHSCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHH
Confidence 4555555555555444
No 97
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.73 E-value=3.1e-07 Score=89.34 Aligned_cols=181 Identities=9% Similarity=0.023 Sum_probs=95.3
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-C---hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCC-HhhHH
Q 037256 245 DLCIQNSIVAMYARCGNVEKARLVFDMMEK--R-D---LISWNSMLTGYIQNGQASEALLLFDEMQNSDC-KPN-PVTAL 316 (680)
Q Consensus 245 ~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~t~~ 316 (680)
+...+-.+...+.+.|++++|...|+++.+ | + ...+..+..+|.+.|++++|+..|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 344555566666677777777777776654 2 2 44566666667777777777777777665421 111 22344
Q ss_pred HHHHHHhh--------hcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHH
Q 037256 317 ILVSACTY--------LGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIA 388 (680)
Q Consensus 317 ~ll~a~~~--------~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~ 388 (680)
.+..++.. .|+++.|...++.+++.. +.+.....++.......+. + ...+..+..
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~-------~---------~~~~~~la~ 156 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAK-------L---------ARKQYEAAR 156 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHH-------H---------HHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHH-------H---------HHHHHHHHH
Confidence 44444444 556666666665555443 1111222111110000000 0 011344556
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHcc----------CCHHHHHHHHHHhhhc
Q 037256 389 GYGMHGHGRKALEFFSQMLEEGVKPD----HITFTSILSACSHA----------GLIDEGRKCFADMTKL 444 (680)
Q Consensus 389 ~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a~~~~----------g~~~~a~~~~~~m~~~ 444 (680)
.|.+.|++++|+..|++..+. .|+ ...+..+..++... |++++|...|+++.+.
T Consensus 157 ~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 157 LYERRELYEAAAVTYEAVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 666777777777777777663 333 12455555555544 6667777777766654
No 98
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.69 E-value=4e-07 Score=86.35 Aligned_cols=46 Identities=13% Similarity=0.113 Sum_probs=36.0
Q ss_pred HHHHHHHHccCCCCC---chHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 037256 497 EIAANYLFQLEPEHT---GYFVLMSNIYAASNKWREVGKLREDMKNKGL 542 (680)
Q Consensus 497 ~~~~~~~~~l~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 542 (680)
...++++++..|+++ ..+..++.+|.+.|++++|.+.++.+...+.
T Consensus 167 ~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 167 VNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 333445566677765 5688999999999999999999999987654
No 99
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.68 E-value=4.7e-07 Score=84.66 Aligned_cols=73 Identities=12% Similarity=0.110 Sum_probs=32.3
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 037256 283 MLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMY 357 (680)
Q Consensus 283 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y 357 (680)
+...|.+.|++++|+..|++..+.. +-+...+..+..++...|++++|...++.+++.. +.+...+..+...|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~ 132 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYY 132 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 4445555555555555555554432 2233344444444444444444444444444433 22333444444443
No 100
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.67 E-value=5e-07 Score=100.86 Aligned_cols=187 Identities=13% Similarity=0.044 Sum_probs=132.7
Q ss_pred hhhcchHHHHHHHHHHH--------HcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhc
Q 037256 323 TYLGSRQLGRKFHGYII--------NSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMH 393 (680)
Q Consensus 323 ~~~g~~~~a~~i~~~~~--------~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~ 393 (680)
...|++++|.+.++.+. +.. +.+...+..+...|.+.|++++|.+.|+++....| +...|..+...|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 56677777777777776 322 44567777788888888888888888888754434 567888888888888
Q ss_pred CChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHH
Q 037256 394 GHGRKALEFFSQMLEEGVKPDH-ITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDM 472 (680)
Q Consensus 394 g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 472 (680)
|++++|++.|++..+ ..|+. ..+..+..++...|++++ .+.|++..+.. +.+...|..+..+|.+.|++++|++.
T Consensus 481 g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 888888888888888 45654 577778888888888888 88888887754 34566788888888888888888888
Q ss_pred HHhC-CCCCCH-hHHHHHHHHHHH----------HHHHHHHHHHccCCCCCchH
Q 037256 473 IKQM-PLPPND-SVWGALLLACRI----------HGEIAANYLFQLEPEHTGYF 514 (680)
Q Consensus 473 ~~~m-~~~p~~-~~~~~ll~a~~~----------~~~~~~~~~~~l~p~~~~~~ 514 (680)
+++. .+.|+. ..|..+..++.. ...++.+.+..+.++++...
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~ 610 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVL 610 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHH
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHH
Confidence 8887 566763 345444444322 13344445555555555443
No 101
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.66 E-value=6e-07 Score=81.41 Aligned_cols=156 Identities=11% Similarity=0.007 Sum_probs=100.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHH-Hhh
Q 037256 249 QNSIVAMYARCGNVEKARLVFDMMEK---RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSA-CTY 324 (680)
Q Consensus 249 ~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~ 324 (680)
...+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..... |+.......... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence 44566778888999999999998875 366788888999999999999999998876643 343322221111 112
Q ss_pred hcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCC---HhHHHHHHHHHHhcCChHHHHH
Q 037256 325 LGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERN---VSSWNVLIAGYGMHGHGRKALE 401 (680)
Q Consensus 325 ~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~ 401 (680)
.+....+...++..++.. +.+...+..+...|.+.|++++|...|+++....|+ ...|..+...|...|+.++|..
T Consensus 87 ~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 87 QAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 222233555666655543 335566666666777777777777777666444443 3456666666666677766766
Q ss_pred HHHHHH
Q 037256 402 FFSQML 407 (680)
Q Consensus 402 l~~~m~ 407 (680)
.|++..
T Consensus 166 ~y~~al 171 (176)
T 2r5s_A 166 KYRRQL 171 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666554
No 102
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.66 E-value=5.5e-07 Score=88.96 Aligned_cols=159 Identities=7% Similarity=0.019 Sum_probs=118.2
Q ss_pred hHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHH-HHHHh
Q 037256 314 TALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLI-AGYGM 392 (680)
Q Consensus 314 t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li-~~~~~ 392 (680)
.+..+...+...|++++|...++.+.+.. +.+...+..+..+|.+.|++++|...|+++....|+........ ..+..
T Consensus 119 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~ 197 (287)
T 3qou_A 119 LXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLX 197 (287)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHh
Confidence 34444445555566666666666555544 44667778888999999999999999999866667655433333 34667
Q ss_pred cCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhcCC-CcChHHHHHHHHHHHhcCCHHHHH
Q 037256 393 HGHGRKALEFFSQMLEEGVKPD-HITFTSILSACSHAGLIDEGRKCFADMTKLSV-KPEVKHYACMVDMLGRAGCLYEAF 470 (680)
Q Consensus 393 ~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~A~ 470 (680)
.++.++|+..+++..+. .|+ ...+..+...+...|++++|...|.++.+..- ..+...+..++..|...|+.++|.
T Consensus 198 ~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~ 275 (287)
T 3qou_A 198 QAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALA 275 (287)
T ss_dssp HHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHH
T ss_pred hcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHH
Confidence 78888899999998884 565 45788888899999999999999999988631 223678889999999999999998
Q ss_pred HHHHh
Q 037256 471 DMIKQ 475 (680)
Q Consensus 471 ~~~~~ 475 (680)
..+++
T Consensus 276 ~~~r~ 280 (287)
T 3qou_A 276 SXYRR 280 (287)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88765
No 103
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.65 E-value=5.5e-07 Score=84.23 Aligned_cols=185 Identities=12% Similarity=0.077 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 037256 279 SWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYA 358 (680)
Q Consensus 279 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~ 358 (680)
.+-.....+.+.|++++|+..|++..+. .|+........ . .. ..........+.+...|.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~-~---~~--------------~~~~~~~~~~~~lg~~~~ 65 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWT-N---VD--------------KNSEISSKLATELALAYK 65 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHH-H---SC--------------TTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHh-h---hc--------------chhhhhHHHHHHHHHHHH
Confidence 3444556678889999999999988764 44432211110 0 00 000112233445777888
Q ss_pred HcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCC--HHHH
Q 037256 359 KCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH-ITFTSILSACSHAGL--IDEG 434 (680)
Q Consensus 359 k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~--~~~a 434 (680)
+.|++++|...|++.....| +...|..+...|...|++++|+..|++..+ +.|+. .++..+...+...|. .+.+
T Consensus 66 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~~~~~~~~~ 143 (208)
T 3urz_A 66 KNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYYLTAEQEKKKL 143 (208)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHhHHHHHHH
Confidence 88888888888888754444 577888888888888888888888888888 45654 467667666655543 3344
Q ss_pred HHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHhHHHH
Q 037256 435 RKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM-PLPPNDSVWGA 487 (680)
Q Consensus 435 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ 487 (680)
...++... ...|....+..+...+...|++++|...|++. .+.|+......
T Consensus 144 ~~~~~~~~--~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~ 195 (208)
T 3urz_A 144 ETDYKKLS--SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKT 195 (208)
T ss_dssp HHHHC-----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHH
T ss_pred HHHHHHHh--CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHH
Confidence 44454443 22232223334455566678888888888775 66676554433
No 104
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.64 E-value=3e-07 Score=102.69 Aligned_cols=183 Identities=13% Similarity=0.041 Sum_probs=149.0
Q ss_pred HHcCChhHHHHHHHHHH--------hCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHH
Q 037256 288 IQNGQASEALLLFDEMQ--------NSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAK 359 (680)
Q Consensus 288 ~~~g~~~~A~~~~~~m~--------~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k 359 (680)
...|++++|++.|++.. +.. +.+...+..+..++...|++++|...++.+++.. +.+...+..+..+|.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 77899999999999987 321 3345677788888999999999999999998875 4577889999999999
Q ss_pred cCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHH
Q 037256 360 CGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH-ITFTSILSACSHAGLIDEGRKC 437 (680)
Q Consensus 360 ~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~ 437 (680)
.|++++|.+.|++.....| +...|..+...|.+.|++++ ++.|++..+ ..|+. ..+..+..++...|++++|.+.
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWS--TNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHH--hCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999855555 56789999999999999999 999999998 45654 5888899999999999999999
Q ss_pred HHHhhhcCCCcC-hHHHHHHHHHHHhcC--------CHHHHHHHHHhCC
Q 037256 438 FADMTKLSVKPE-VKHYACMVDMLGRAG--------CLYEAFDMIKQMP 477 (680)
Q Consensus 438 ~~~m~~~~~~p~-~~~~~~li~~~~~~g--------~~~~A~~~~~~m~ 477 (680)
|++..+. .|+ ...+..+..++...| ++++|.+.+..++
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~ 603 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP 603 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence 9988865 344 567777777776644 4777888887774
No 105
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.60 E-value=3e-06 Score=79.35 Aligned_cols=163 Identities=9% Similarity=0.012 Sum_probs=108.8
Q ss_pred CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhc----chHHHHHHHHHHHHcCCCCchHHH
Q 037256 275 RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLG----SRQLGRKFHGYIINSNMKIDATLR 350 (680)
Q Consensus 275 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~i~~~~~~~~~~~~~~~~ 350 (680)
.++.++..+...|...+++++|+..|++..+.| +...+..+-..+.. + +.++|...+....+.| +...+
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~ 88 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGE 88 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 355556666666666666666666666666544 34444455555555 4 6667777776666554 45566
Q ss_pred HHHHHHHHH----cCCHHHHHHHHhhcCCCCCC---HhHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHH
Q 037256 351 NAVMDMYAK----CGDLDTAENMFNDIHPSERN---VSSWNVLIAGYGM----HGHGRKALEFFSQMLEEGVKPDHITFT 419 (680)
Q Consensus 351 ~~li~~y~k----~g~~~~A~~~f~~~~~~~~~---~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~ 419 (680)
..|..+|.. .+++++|.+.|++.....+. +.++..|...|.. .++.++|+..|++..+. .++...+.
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~ 166 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEY 166 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHH
Confidence 667777766 67888888888888555553 6778888888877 77888888888888874 23444555
Q ss_pred HHHHHHHcc-C-----CHHHHHHHHHHhhhcCC
Q 037256 420 SILSACSHA-G-----LIDEGRKCFADMTKLSV 446 (680)
Q Consensus 420 ~ll~a~~~~-g-----~~~~a~~~~~~m~~~~~ 446 (680)
.|...|... | ++++|..+|+...+.|.
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 666666532 2 78888888888877763
No 106
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.58 E-value=4.2e-07 Score=99.48 Aligned_cols=163 Identities=12% Similarity=-0.022 Sum_probs=108.2
Q ss_pred hcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHH
Q 037256 325 LGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFF 403 (680)
Q Consensus 325 ~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~ 403 (680)
.|++++|.+.++.+.+.. +.+...+..+...|.+.|++++|.+.|++.....| +...|..+...|...|++++|++.|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 366777888887776654 34567777788888888888888888887755544 4667788888888888888888888
Q ss_pred HHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhc---CCHHHHHHHHHhCCCC
Q 037256 404 SQMLEEGVKPD-HITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRA---GCLYEAFDMIKQMPLP 479 (680)
Q Consensus 404 ~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~ 479 (680)
++..+. .|+ ...+..+..++...|++++|.+.+++..+.. +.+...+..+...+... |+.++|.+.++
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~----- 152 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVR----- 152 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHH-----
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHH-----
Confidence 888774 454 4577777778888888888888888877653 33456777777777777 77777766665
Q ss_pred CCHhHHHHHHHHHHHHHHHHHHHHHccCCCCCchHHHHH
Q 037256 480 PNDSVWGALLLACRIHGEIAANYLFQLEPEHTGYFVLMS 518 (680)
Q Consensus 480 p~~~~~~~ll~a~~~~~~~~~~~~~~l~p~~~~~~~~l~ 518 (680)
++++.+|++...+..++
T Consensus 153 ----------------------~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 153 ----------------------AAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp ----------------------HHHHHTCCCSCHHHHTT
T ss_pred ----------------------HHHhcCCcccChHHHhC
Confidence 44678999988888776
No 107
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.58 E-value=3.2e-07 Score=91.67 Aligned_cols=93 Identities=9% Similarity=-0.037 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhcCCCCC---C----HhHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCCH-H
Q 037256 349 LRNAVMDMYAKCGDLDTAENMFNDIHPSER---N----VSSWNVLIAGYGMHGHGRKALEFFSQMLEE----GVKPDH-I 416 (680)
Q Consensus 349 ~~~~li~~y~k~g~~~~A~~~f~~~~~~~~---~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~-~ 416 (680)
+++.+..+|.+ |++++|...|++.....+ + ..+++.+...|.+.|++++|+..|++..+. +..++. .
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK 196 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence 44455555555 666666666655422111 1 345666666677777777777777766652 111111 1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhh
Q 037256 417 TFTSILSACSHAGLIDEGRKCFADMT 442 (680)
Q Consensus 417 t~~~ll~a~~~~g~~~~a~~~~~~m~ 442 (680)
++..+..++...|++++|...|++..
T Consensus 197 ~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 197 KCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 44445555566677777777777666
No 108
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.56 E-value=6.4e-07 Score=81.19 Aligned_cols=152 Identities=11% Similarity=0.094 Sum_probs=104.6
Q ss_pred HHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHH-HHhcCChHHH
Q 037256 321 ACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAG-YGMHGHGRKA 399 (680)
Q Consensus 321 a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~-~~~~g~~~~A 399 (680)
.+...|++++|...++.+.+.. +.+...+..+..+|.+.|++++|...|++.....|+...+..+... +...+...+|
T Consensus 15 ~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~a 93 (176)
T 2r5s_A 15 ELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPE 93 (176)
T ss_dssp HHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccchH
Confidence 3444445555555554443332 3456777788888889999999999999886555544433322211 2222333457
Q ss_pred HHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCC-cChHHHHHHHHHHHhcCCHHHHHHHHHh
Q 037256 400 LEFFSQMLEEGVKPD-HITFTSILSACSHAGLIDEGRKCFADMTKLSVK-PEVKHYACMVDMLGRAGCLYEAFDMIKQ 475 (680)
Q Consensus 400 ~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~ 475 (680)
+..+++..+ ..|+ ...+..+...+...|++++|...|+++.+.... .+...+..+...+...|+.++|...+++
T Consensus 94 ~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~ 169 (176)
T 2r5s_A 94 LKRLEQELA--ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRR 169 (176)
T ss_dssp HHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHH--hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 888888888 4665 567888888899999999999999998876422 2356788888999999999999888875
No 109
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.50 E-value=6.4e-06 Score=77.92 Aligned_cols=193 Identities=10% Similarity=-0.060 Sum_probs=96.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC----hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHh----hHH
Q 037256 247 CIQNSIVAMYARCGNVEKARLVFDMMEK--RD----LISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPV----TAL 316 (680)
Q Consensus 247 ~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~ 316 (680)
..+..+...+.+.|++++|...|+++.+ |+ ...+..+..+|.+.|++++|+..|+++.+.. |+.. .+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHHH
Confidence 3445566677778888888888887653 22 2456667778888888888888888877642 3221 222
Q ss_pred HHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCH-hHHHHHHHHHHhcCC
Q 037256 317 ILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNV-SSWNVLIAGYGMHGH 395 (680)
Q Consensus 317 ~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~-~~~~~li~~~~~~g~ 395 (680)
.+..++...+.. .+ ..+..+...+...|++++|...|+++....|+. ..+.+....-
T Consensus 83 ~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~----- 140 (225)
T 2yhc_A 83 MRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLV----- 140 (225)
T ss_dssp HHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHH-----
T ss_pred HHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHH-----
Confidence 222222222110 00 011122233344567777777777775554542 2222111100
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhcC--CCcChHHHHHHHHHHHhcCCHHHHHHHH
Q 037256 396 GRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKLS--VKPEVKHYACMVDMLGRAGCLYEAFDMI 473 (680)
Q Consensus 396 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~ 473 (680)
.+...+. .....+...+.+.|++++|...|+.+.+.. .+.....+..+..+|.+.|+.++|.+.+
T Consensus 141 -----~~~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~ 207 (225)
T 2yhc_A 141 -----FLKDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVA 207 (225)
T ss_dssp -----HHHHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -----HHHHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 0000000 011223445566666666666666666541 1111244556666666666666666666
Q ss_pred HhC
Q 037256 474 KQM 476 (680)
Q Consensus 474 ~~m 476 (680)
+.+
T Consensus 208 ~~l 210 (225)
T 2yhc_A 208 KII 210 (225)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 110
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.50 E-value=2.9e-06 Score=79.47 Aligned_cols=163 Identities=13% Similarity=0.033 Sum_probs=100.0
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhcCC-CChhHHHHHHHHHHHcC----ChhHHHHHHHHHHhCCCCCCHhhHHHHH
Q 037256 245 DLCIQNSIVAMYARCGNVEKARLVFDMMEK-RDLISWNSMLTGYIQNG----QASEALLLFDEMQNSDCKPNPVTALILV 319 (680)
Q Consensus 245 ~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~t~~~ll 319 (680)
++..+..|..+|...+++++|.+.|++..+ .++.++..|...|.. + ++++|++.|++..+.| +...+..+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg 92 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLA 92 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 334444455555555555555555555433 244555555555555 4 5666666666665543 344455555
Q ss_pred HHHhh----hcchHHHHHHHHHHHHcCCC-CchHHHHHHHHHHHH----cCCHHHHHHHHhhcCCCCCCHhHHHHHHHHH
Q 037256 320 SACTY----LGSRQLGRKFHGYIINSNMK-IDATLRNAVMDMYAK----CGDLDTAENMFNDIHPSERNVSSWNVLIAGY 390 (680)
Q Consensus 320 ~a~~~----~g~~~~a~~i~~~~~~~~~~-~~~~~~~~li~~y~k----~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~ 390 (680)
..+.. .+++++|...+....+.+.. .++..+..|..+|.. .+++++|...|++......+..++..|...|
T Consensus 93 ~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~~y 172 (212)
T 3rjv_A 93 RVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMMF 172 (212)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHHHHH
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 55544 55666666666666655421 125666777777777 6788888888888743334566777777777
Q ss_pred Hhc-C-----ChHHHHHHHHHHHHcCC
Q 037256 391 GMH-G-----HGRKALEFFSQMLEEGV 411 (680)
Q Consensus 391 ~~~-g-----~~~~A~~l~~~m~~~g~ 411 (680)
... | +.++|+..|++..+.|.
T Consensus 173 ~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 173 QQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 643 2 78888888888888763
No 111
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.49 E-value=1.1e-06 Score=87.80 Aligned_cols=216 Identities=10% Similarity=-0.012 Sum_probs=139.8
Q ss_pred CCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 037256 190 EKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVF 269 (680)
Q Consensus 190 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f 269 (680)
|++++|.+++++..+..- .. + +...++++.|...+..+ ...|...|++++|...|
T Consensus 5 ~~~~eA~~~~~~a~k~~~-~~---~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~ 59 (307)
T 2ifu_A 5 QKISEAHEHIAKAEKYLK-TS---F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAY 59 (307)
T ss_dssp HHHHHHHHHHHHHHHHHC-CC---S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHcc-cc---c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHH
Confidence 556667777666554311 10 0 11135666666655543 34566677777777766
Q ss_pred HhcCC-----CC----hhHHHHHHHHHHHcCChhHHHHHHHHHHhC----CCCCC--HhhHHHHHHHHhhhcchHHHHHH
Q 037256 270 DMMEK-----RD----LISWNSMLTGYIQNGQASEALLLFDEMQNS----DCKPN--PVTALILVSACTYLGSRQLGRKF 334 (680)
Q Consensus 270 ~~m~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~--~~t~~~ll~a~~~~g~~~~a~~i 334 (680)
.+..+ .+ ..+|+.+...|.+.|++++|+..|++..+. | .+. ..++..+...+.. |++++|...
T Consensus 60 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 60 LQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-TPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 65542 11 346777888888889998888888876542 2 222 3466777777877 999999998
Q ss_pred HHHHHHcCCC-----CchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCC---CC----HhHHHHHHHHHHhcCChHHHHHH
Q 037256 335 HGYIINSNMK-----IDATLRNAVMDMYAKCGDLDTAENMFNDIHPSE---RN----VSSWNVLIAGYGMHGHGRKALEF 402 (680)
Q Consensus 335 ~~~~~~~~~~-----~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~---~~----~~~~~~li~~~~~~g~~~~A~~l 402 (680)
++..++.... ....+++.+...|.+.|++++|...|++..... ++ ...+..+...+...|++++|+..
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8887653211 114677888999999999999999999874321 11 23566777788888999999999
Q ss_pred HHHHHHcCCCCCH------HHHHHHHHHHHccCCHHHHHH
Q 037256 403 FSQMLEEGVKPDH------ITFTSILSACSHAGLIDEGRK 436 (680)
Q Consensus 403 ~~~m~~~g~~p~~------~t~~~ll~a~~~~g~~~~a~~ 436 (680)
|++.. . .|+. .....++.++ ..|+.+...+
T Consensus 218 ~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 218 VRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 99988 3 4432 1344445544 4566655555
No 112
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.49 E-value=6.5e-06 Score=81.19 Aligned_cols=159 Identities=11% Similarity=0.026 Sum_probs=79.1
Q ss_pred hHHHHHHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHH-HHHHHH
Q 037256 212 VTIVSVASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEK--RDLISWNS-MLTGYI 288 (680)
Q Consensus 212 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~~~~~~~~-li~~~~ 288 (680)
..+..+...+...|++++|...++.+++.. +.+...+..|...|.+.|++++|...++++.. |+...... ....+.
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~ 196 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELL 196 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHH
Confidence 334444444455555555555555555443 23444555566666666666666666666553 22221111 112244
Q ss_pred HcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHH
Q 037256 289 QNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAEN 368 (680)
Q Consensus 289 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~ 368 (680)
+.++.++|+..|++..+. . +.+...+..+...|...|++++|.+
T Consensus 197 ~~~~~~~a~~~l~~al~~-----------------------------------~-P~~~~~~~~la~~l~~~g~~~~A~~ 240 (287)
T 3qou_A 197 XQAADTPEIQQLQQQVAE-----------------------------------N-PEDAALATQLALQLHQVGRNEEALE 240 (287)
T ss_dssp HHHTSCHHHHHHHHHHHH-----------------------------------C-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhcccCccHHHHHHHHhc-----------------------------------C-CccHHHHHHHHHHHHHcccHHHHHH
Confidence 445555555555555443 2 2344444555555555555555555
Q ss_pred HHhhcCCCCCC---HhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 037256 369 MFNDIHPSERN---VSSWNVLIAGYGMHGHGRKALEFFSQML 407 (680)
Q Consensus 369 ~f~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~ 407 (680)
.|+++....|+ ...+..++..|...|+.++|...|++..
T Consensus 241 ~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 241 LLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 55555333332 3345555555555555555555555443
No 113
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.48 E-value=1.1e-05 Score=79.68 Aligned_cols=164 Identities=10% Similarity=-0.034 Sum_probs=119.9
Q ss_pred HHHHHHHcCCHHHHHHHHhhcCCCCC---CH----hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----HHHHHH
Q 037256 353 VMDMYAKCGDLDTAENMFNDIHPSER---NV----SSWNVLIAGYGMHGHGRKALEFFSQMLEEGVK-PD----HITFTS 420 (680)
Q Consensus 353 li~~y~k~g~~~~A~~~f~~~~~~~~---~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~~ 420 (680)
.+..+.+.|++++|.+.+++.....+ +. ..+..+...+...|++++|+..|++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46778899999999999998744322 21 12344666777788999999999999984322 22 226888
Q ss_pred HHHHHHccCCHHHHHHHHHHhhhc-----CCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHH
Q 037256 421 ILSACSHAGLIDEGRKCFADMTKL-----SVKPE-VKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRI 494 (680)
Q Consensus 421 ll~a~~~~g~~~~a~~~~~~m~~~-----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~ 494 (680)
+...|...|++++|..+|+++.+. +..+. ..+|..+...|.+.|++++|++.+++.-
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al----------------- 223 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI----------------- 223 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-----------------
Confidence 888999999999999999998853 22222 3477889999999999999999987640
Q ss_pred HHHHHHHHHHc--cCCCCCchHHHHHHHHHhcCC-hhHHHHHHHHHHh
Q 037256 495 HGEIAANYLFQ--LEPEHTGYFVLMSNIYAASNK-WREVGKLREDMKN 539 (680)
Q Consensus 495 ~~~~~~~~~~~--l~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~m~~ 539 (680)
+...+ ..+.-+..|..++.+|.+.|+ +++|.+.+++...
T Consensus 224 ------~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 224 ------EISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp ------HHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ------HHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 00001 112224678899999999995 6999999988753
No 114
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.46 E-value=5.7e-07 Score=79.14 Aligned_cols=134 Identities=6% Similarity=-0.035 Sum_probs=98.1
Q ss_pred CChHHHHHHhhhccCCCC-CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHH
Q 037256 56 GEPNTARSLFNSIHNDKS-YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHG 134 (680)
Q Consensus 56 g~~~~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 134 (680)
|+++.|+..|.......| +...|..+...|.+.|++++|++.|++..+..+. +..+|..+..++...|++++|...++
T Consensus 11 ~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~ 89 (150)
T 4ga2_A 11 ADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKAVECYR 89 (150)
T ss_dssp HHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 889999999988877766 4567778888899999999999999988876432 56677778888888888888888888
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHH-hcCC---CCChhHHHHHHHHHHhCCC
Q 037256 135 DIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVF-DEMS---VRDLVSWTVMITAYEQAEK 191 (680)
Q Consensus 135 ~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f-~~~~---~~~~~~~~~li~~~~~~g~ 191 (680)
..++.. +.++.++..+...|.+.|+.++|.+.| ++.. ..+...|+.....+...|+
T Consensus 90 ~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 90 RSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 888875 345677777777788888776655543 4332 2355566655555555553
No 115
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.45 E-value=4.7e-07 Score=89.13 Aligned_cols=187 Identities=9% Similarity=-0.050 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHH
Q 037256 348 TLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH-ITFTSILSAC 425 (680)
Q Consensus 348 ~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~ 425 (680)
..+..+...|.+.|++++|...|++.....| +...|..+...|.+.|++++|+..+++..+ +.|+. ..+..+..++
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 3444455555566666666666655533333 455555566666666666666666666555 34432 3555555566
Q ss_pred HccCCHHHHHHHHHHhhhcCCCcCh-HHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHH----HHHHH
Q 037256 426 SHAGLIDEGRKCFADMTKLSVKPEV-KHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIH----GEIAA 500 (680)
Q Consensus 426 ~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~----~~~~~ 500 (680)
...|++++|...|++..+.. |+. ..+...+....+......... .......++.... ..+..+... |...+
T Consensus 83 ~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~-~~l~~l~~~~~~~A~~~~ 158 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELH-SYLTRLIAAERERELEEC 158 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHH-HHHHHHHHHHHHHHHTTT
T ss_pred HHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHH-HHHHHHHHHHHHHHHHHH
Confidence 66666666666666555431 110 000011111111111111111 1112222222222 222222211 33344
Q ss_pred HHHHccCCCCCchHHHHHHHHHhc-CChhHHHHHHHHHHhC
Q 037256 501 NYLFQLEPEHTGYFVLMSNIYAAS-NKWREVGKLREDMKNK 540 (680)
Q Consensus 501 ~~~~~l~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 540 (680)
+++++++|++......+..++.+. +++++|.++|.++.+.
T Consensus 159 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 159 QRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp SGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 456677887776666777777776 7799999999988653
No 116
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.45 E-value=6.5e-06 Score=76.84 Aligned_cols=144 Identities=13% Similarity=-0.096 Sum_probs=82.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchH
Q 037256 250 NSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQ 329 (680)
Q Consensus 250 ~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 329 (680)
..+...|...|++++|...|++...++...|..+...|.+.|++++|+..|++..+.. +.+...+..+..++...|+++
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHH
Confidence 3455667777888888888887777777777777777778888888887777776542 223344444444444444444
Q ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 037256 330 LGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLE 408 (680)
Q Consensus 330 ~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 408 (680)
+|...++.+.+......... | ........| ....|..+...|...|++++|.+.|++..+
T Consensus 89 ~A~~~~~~al~~~~~~~~~~-------~------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 89 LAIKDLKEALIQLRGNQLID-------Y------------KILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHHHHHHHHHHTTTTCSEEE-------C------------GGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCccHHH-------H------------HHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 44444444443221100000 0 000000001 125666777777777777777777777776
Q ss_pred cCCCCCH
Q 037256 409 EGVKPDH 415 (680)
Q Consensus 409 ~g~~p~~ 415 (680)
+.|+.
T Consensus 150 --~~p~~ 154 (213)
T 1hh8_A 150 --MKSEP 154 (213)
T ss_dssp --TCCSG
T ss_pred --cCccc
Confidence 45544
No 117
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.45 E-value=0.00014 Score=71.67 Aligned_cols=212 Identities=10% Similarity=-0.027 Sum_probs=126.0
Q ss_pred ccHHHHHHHHHHHcCCCCCHhH-HHHHHHHHhccC--ChHHHHHHHHHHHHccCCCChhHHHHHHHHH----Hhc---CC
Q 037256 192 PEEALILFQKTQQEGLLSDSVT-IVSVASAVGQLG--DVLKAQAVHGYAICNAFLEDLCIQNSIVAMY----ARC---GN 261 (680)
Q Consensus 192 ~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y----~~~---g~ 261 (680)
.++|++++.+++.. .|+..| ++.--..+...+ +++++.+.++.+++.. +.+..+|+.--..+ .+. ++
T Consensus 49 s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 49 SERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp SHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCC
Confidence 35677777777664 344333 444444555555 7777777777776654 33444454443333 444 67
Q ss_pred HHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChh--HHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcc------hHH
Q 037256 262 VEKARLVFDMMEK---RDLISWNSMLTGYIQNGQAS--EALLLFDEMQNSDCKPNPVTALILVSACTYLGS------RQL 330 (680)
Q Consensus 262 ~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~------~~~ 330 (680)
++++.++++.+.+ +|..+|+.-...+.+.|.++ ++++.+.++.+.. +-|...|+.-.......+. +++
T Consensus 126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp THHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 7788888877764 46677877777777778877 8888888888764 3355555554444444444 566
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHH-HHHHHhhcCCC----CCCHhHHHHHHHHHHhcCChHHHHHHHHH
Q 037256 331 GRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDT-AENMFNDIHPS----ERNVSSWNVLIAGYGMHGHGRKALEFFSQ 405 (680)
Q Consensus 331 a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~-A~~~f~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 405 (680)
+.+....++... +.|...|+-+-..+.+.|+... +..+..++... .++...+..+...|.+.|+.++|+++++.
T Consensus 205 El~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 205 ELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 666666666554 4466666666666666665333 33344443221 23445555566666666666666666666
Q ss_pred HHH
Q 037256 406 MLE 408 (680)
Q Consensus 406 m~~ 408 (680)
+.+
T Consensus 284 l~~ 286 (306)
T 3dra_A 284 LKS 286 (306)
T ss_dssp HHH
T ss_pred HHh
Confidence 554
No 118
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.45 E-value=6.1e-06 Score=79.52 Aligned_cols=140 Identities=9% Similarity=-0.018 Sum_probs=104.0
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHH
Q 037256 347 ATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPD--HITFTSILSA 424 (680)
Q Consensus 347 ~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a 424 (680)
..+.-.+..++...|++++|.++|+.+....|+......+...+.+.+++++|+..|++..... .|. ...+..+-.+
T Consensus 102 ~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 102 LAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHH
Confidence 3455567788889999999999999997667765466667778889999999999998554311 121 2356777888
Q ss_pred HHccCCHHHHHHHHHHhhhcCCCcC--hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHhHHHH
Q 037256 425 CSHAGLIDEGRKCFADMTKLSVKPE--VKHYACMVDMLGRAGCLYEAFDMIKQM-PLPPNDSVWGA 487 (680)
Q Consensus 425 ~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ 487 (680)
+...|++++|+..|++.......|. .........++.+.|+.++|...|+++ ...|+...+.+
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~~~~~~a 246 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPEPKVAAA 246 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHH
Confidence 9999999999999999875443253 445667778899999999999999987 44566334433
No 119
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.43 E-value=2.4e-06 Score=72.48 Aligned_cols=92 Identities=11% Similarity=0.058 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHH
Q 037256 381 SSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPD-HITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDM 459 (680)
Q Consensus 381 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 459 (680)
..|......|.+.|++++|++.|++.++ +.|+ ...|..+..++.+.|++++|+..|++.++.. +.+...|..+..+
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 90 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVK--RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHH
Confidence 3455666667777777777777777766 3443 4466666667777777777777777776653 3445667777777
Q ss_pred HHhcCCHHHHHHHHHh
Q 037256 460 LGRAGCLYEAFDMIKQ 475 (680)
Q Consensus 460 ~~~~g~~~~A~~~~~~ 475 (680)
|...|++++|.+.|++
T Consensus 91 ~~~~~~~~~A~~~~~~ 106 (126)
T 4gco_A 91 LVAMREWSKAQRAYED 106 (126)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHH
Confidence 7777777777666654
No 120
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.43 E-value=8.7e-06 Score=75.96 Aligned_cols=123 Identities=10% Similarity=-0.033 Sum_probs=103.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcc
Q 037256 350 RNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKP-DHITFTSILSACSHA 428 (680)
Q Consensus 350 ~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~ 428 (680)
+..+...|.+.|++++|.+.|++. ..++...|..+...|...|++++|++.|++..+. .| +...+..+..++...
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAV--QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS--SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH--cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHc
Confidence 445677788999999999999998 5678889999999999999999999999999985 45 456888888999999
Q ss_pred CCHHHHHHHHHHhhhcC--------------CCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256 429 GLIDEGRKCFADMTKLS--------------VKP-EVKHYACMVDMLGRAGCLYEAFDMIKQM 476 (680)
Q Consensus 429 g~~~~a~~~~~~m~~~~--------------~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 476 (680)
|++++|.+.|++..+.. ..| ....+..+..+|.+.|++++|.+.+++.
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999999999998852 111 2367888889999999999999888875
No 121
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.43 E-value=1.6e-06 Score=76.01 Aligned_cols=102 Identities=12% Similarity=0.010 Sum_probs=75.4
Q ss_pred CCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHH
Q 037256 411 VKPDHI-TFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALL 489 (680)
Q Consensus 411 ~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll 489 (680)
+.|+.. .+..+...+.+.|++++|...|+++.+.. +.+...|..+..+|.+.|++++|++.|++
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~-------------- 95 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAV-------------- 95 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH--------------
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHH--------------
Confidence 445443 55566666777777777777777777653 34566777777888888888887777654
Q ss_pred HHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 037256 490 LACRIHGEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNK 540 (680)
Q Consensus 490 ~a~~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 540 (680)
+++++|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 96 -------------al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 96 -------------AFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp -------------HHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------------HHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35678888888888888888888888888888888764
No 122
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.42 E-value=3e-05 Score=76.42 Aligned_cols=217 Identities=12% Similarity=0.062 Sum_probs=106.9
Q ss_pred ChhHHHHHHHHHHhCCCCCCHh-hHHHHHHHHhhhc--chHHHHHHHHHHHHcCCCCchHHHHHHHHHH----HHc---C
Q 037256 292 QASEALLLFDEMQNSDCKPNPV-TALILVSACTYLG--SRQLGRKFHGYIINSNMKIDATLRNAVMDMY----AKC---G 361 (680)
Q Consensus 292 ~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g--~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y----~k~---g 361 (680)
..++|++++.++... .|+.. .++.--.++...+ +++++...++.++..+ +-+..+|+.-...+ .+. +
T Consensus 48 ~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 48 YSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccC
Confidence 345677776666653 33332 3333333444444 5555555555555443 22333443333333 333 4
Q ss_pred CHHHHHHHHhhcCCC-CCCHhHHHHHHHHHHhcCChH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC------HH
Q 037256 362 DLDTAENMFNDIHPS-ERNVSSWNVLIAGYGMHGHGR--KALEFFSQMLEEGVKPDHITFTSILSACSHAGL------ID 432 (680)
Q Consensus 362 ~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~--~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~------~~ 432 (680)
+++++.+.++.+... .+|..+|+.-.-.+.+.|.++ ++++.++++.+... -|...|+.-.....+.+. ++
T Consensus 125 ~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 125 DPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp CTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhHH
Confidence 445555555544222 234444544444444444444 55555555554321 122333333333333333 44
Q ss_pred HHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHHHHHHHHHHccC---CC
Q 037256 433 EGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEIAANYLFQLE---PE 509 (680)
Q Consensus 433 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~~~~~~l~---p~ 509 (680)
++++.++.++... +-|...|+.+-..+.+.|+..++ ......++++++ |.
T Consensus 204 eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~ 256 (306)
T 3dra_A 204 EELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQ--------------------------LEEFSLQFVDLEKDQVT 256 (306)
T ss_dssp HHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGG--------------------------GHHHHHTTEEGGGTEES
T ss_pred HHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHH--------------------------HHHHHHHHHhccCCCCC
Confidence 4444444444332 22333333333333333332111 122233344444 77
Q ss_pred CCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 037256 510 HTGYFVLMSNIYAASNKWREVGKLREDMKN 539 (680)
Q Consensus 510 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 539 (680)
++..+..++.+|.+.|+.++|.++++.+.+
T Consensus 257 s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 257 SSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 888899999999999999999999999875
No 123
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.42 E-value=1.5e-06 Score=95.13 Aligned_cols=149 Identities=6% Similarity=-0.027 Sum_probs=109.3
Q ss_pred CChHHHHHHhhhccCCCC-CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHH
Q 037256 56 GEPNTARSLFNSIHNDKS-YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHG 134 (680)
Q Consensus 56 g~~~~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 134 (680)
|++++|.+.|++.....| +...|..+...+.+.|++++|++.|++..+... -+...+..+..++...|++++|.+.++
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 889999999999988877 577899999999999999999999999987642 256678888888999999999999999
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCChhHHHHHHHHHHhC---CCccHHHHHHHHHHHcC
Q 037256 135 DIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMS---VRDLVSWTVMITAYEQA---EKPEEALILFQKTQQEG 206 (680)
Q Consensus 135 ~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g 206 (680)
+.++.. +.+...+..+...|.+.|++++|.+.|++.. ..+...+..+...+... |++++|.+.|++..+.+
T Consensus 82 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 82 QASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 999875 4567788888889999999999999888764 23567788888888888 88888999888887764
No 124
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.38 E-value=1.5e-06 Score=83.69 Aligned_cols=203 Identities=14% Similarity=0.035 Sum_probs=94.5
Q ss_pred CCChHHHHHHhhhccCCCC-CcchHHHH-------HHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCCh
Q 037256 55 YGEPNTARSLFNSIHNDKS-YSFLWNTM-------IRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLI 126 (680)
Q Consensus 55 ~g~~~~A~~~f~~~~~~~p-~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 126 (680)
.++++.|++.|.++.+..| ....|+.+ ...+.+.++..+++..+.+-.+ +.|+......-| .|-+
T Consensus 19 ~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~-----~g~y 91 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAI-----GGLY 91 (282)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEEC-----CTTT
T ss_pred CCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhcc-----CCcc
Confidence 3999999999999998888 46689888 4566666666666666555443 333221100000 0000
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--CChhHHHHHHHHHHhCCCccHHHHHHHHHHH
Q 037256 127 LEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMSV--RDLVSWTVMITAYEQAEKPEEALILFQKTQQ 204 (680)
Q Consensus 127 ~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 204 (680)
. . ++.-+..-..+.-.+...+...|++++|.++|+.+.. |+......+...+.+.+++++|+..|+....
T Consensus 92 ~-------~-~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~ 163 (282)
T 4f3v_A 92 G-------D-ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGK 163 (282)
T ss_dssp C-------C-CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG
T ss_pred c-------c-cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Confidence 0 0 0000000111222333444445555555555555432 2111333333445555555555555543322
Q ss_pred cCCCCC--HhHHHHHHHHHhccCChHHHHHHHHHHHHccCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 037256 205 EGLLSD--SVTIVSVASAVGQLGDVLKAQAVHGYAICNAFLED--LCIQNSIVAMYARCGNVEKARLVFDMME 273 (680)
Q Consensus 205 ~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~Li~~y~~~g~~~~A~~~f~~m~ 273 (680)
.. .|. ...+..+-.++...|++++|...+++.......|. ......+..++.+.|+.++|..+|+++.
T Consensus 164 ~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~ 235 (282)
T 4f3v_A 164 WP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQ 235 (282)
T ss_dssp CS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 11 000 12334444455555555555555555543221122 2233444455555566666666655554
No 125
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.37 E-value=1.7e-06 Score=75.82 Aligned_cols=102 Identities=8% Similarity=0.037 Sum_probs=73.1
Q ss_pred CCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHH
Q 037256 411 VKPDHI-TFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALL 489 (680)
Q Consensus 411 ~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll 489 (680)
+.|+.. .+..+...+...|++++|...|+...+.. +.+...|..+..+|.+.|++++|++.+++
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~-------------- 80 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSY-------------- 80 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH--------------
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHH--------------
Confidence 445433 55556666777777777777777776653 34566677777777778888777776654
Q ss_pred HHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 037256 490 LACRIHGEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNK 540 (680)
Q Consensus 490 ~a~~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 540 (680)
+++++|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 81 -------------al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 81 -------------GAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp -------------HHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------------HHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34567888888888888888888888888888887653
No 126
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.35 E-value=2.2e-05 Score=77.52 Aligned_cols=61 Identities=5% Similarity=-0.173 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhC----CCCCC-HhhHHHHHHHHhhhcc-hHHHHHHHHHHH
Q 037256 279 SWNSMLTGYIQNGQASEALLLFDEMQNS----DCKPN-PVTALILVSACTYLGS-RQLGRKFHGYII 339 (680)
Q Consensus 279 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~-~~~a~~i~~~~~ 339 (680)
+|..+...|.+.|++++|+..+++..+. +..+. ..++..+..++...|+ .++|...++...
T Consensus 198 ~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 198 VRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 3444555555555555555555544321 11111 3344445555555552 355555554443
No 127
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.33 E-value=9e-06 Score=67.95 Aligned_cols=95 Identities=17% Similarity=0.260 Sum_probs=57.1
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHH
Q 037256 380 VSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDM 459 (680)
Q Consensus 380 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 459 (680)
...|..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|++++|..+++++.+.. +.+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 4455566666666666666666666666532 2234455566666666666666666666666542 3345556666666
Q ss_pred HHhcCCHHHHHHHHHhC
Q 037256 460 LGRAGCLYEAFDMIKQM 476 (680)
Q Consensus 460 ~~~~g~~~~A~~~~~~m 476 (680)
|.+.|++++|.+.++++
T Consensus 87 ~~~~~~~~~A~~~~~~~ 103 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKA 103 (125)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHH
Confidence 66666666666666543
No 128
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.33 E-value=3.7e-06 Score=85.05 Aligned_cols=129 Identities=10% Similarity=-0.024 Sum_probs=102.3
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH----------------HHHHHHHHHHHccCCHHHHHHHHHHhhh
Q 037256 380 VSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH----------------ITFTSILSACSHAGLIDEGRKCFADMTK 443 (680)
Q Consensus 380 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----------------~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 443 (680)
...|..+...|.+.|++++|+..|++..+. .|+. ..|..+..++.+.|++++|...+++..+
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456677777777788888888888887773 4443 6788888888899999999999998887
Q ss_pred cCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHh
Q 037256 444 LSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEIAANYLFQLEPEHTGYFVLMSNIYAA 523 (680)
Q Consensus 444 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~ 523 (680)
.. +.+...|..+..+|...|++++|++.|++ +++++|+++.++..++.++..
T Consensus 225 ~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~---------------------------al~l~P~~~~a~~~l~~~~~~ 276 (336)
T 1p5q_A 225 LD-SNNEKGLSRRGEAHLAVNDFELARADFQK---------------------------VLQLYPNNKAAKTQLAVCQQR 276 (336)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH---------------------------HHHHCSSCHHHHHHHHHHHHH
T ss_pred hC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHH---------------------------HHHHCCCCHHHHHHHHHHHHH
Confidence 64 44677888888999999999998887765 456789898999999999999
Q ss_pred cCChhHH-HHHHHHHH
Q 037256 524 SNKWREV-GKLREDMK 538 (680)
Q Consensus 524 ~g~~~~A-~~~~~~m~ 538 (680)
.|++++| .+.++.|.
T Consensus 277 ~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 277 IRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999998 44666654
No 129
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.32 E-value=1.3e-05 Score=71.23 Aligned_cols=128 Identities=14% Similarity=0.090 Sum_probs=94.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHH
Q 037256 381 SSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKP-DHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDM 459 (680)
Q Consensus 381 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 459 (680)
..|..+...+...|++++|...|++..+. .| +...+..+...+...|++++|...+++..+.. +.+...+..+...
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 45667777788888888888888888774 34 45577777778888888888888888887753 4456778888888
Q ss_pred HHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHHHHHHHHHHccCCCCCchHHH--HHHHHHhcCChhHHHHHHHHH
Q 037256 460 LGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEIAANYLFQLEPEHTGYFVL--MSNIYAASNKWREVGKLREDM 537 (680)
Q Consensus 460 ~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~~~~~~l~p~~~~~~~~--l~~~~~~~g~~~~A~~~~~~m 537 (680)
+.+.|++++|.+.+++. +++.|+++..+.. ++..+...|++++|.+.++..
T Consensus 91 ~~~~~~~~~A~~~~~~a---------------------------~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 91 NMALGKFRAALRDYETV---------------------------VKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHTTCHHHHHHHHHHH---------------------------HHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHH---------------------------HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 88889888888877654 3445665555533 344477788899988888776
Q ss_pred H
Q 037256 538 K 538 (680)
Q Consensus 538 ~ 538 (680)
.
T Consensus 144 ~ 144 (166)
T 1a17_A 144 R 144 (166)
T ss_dssp H
T ss_pred H
Confidence 4
No 130
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.30 E-value=1.8e-05 Score=78.15 Aligned_cols=167 Identities=11% Similarity=0.012 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Q 037256 279 SWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYA 358 (680)
Q Consensus 279 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~ 358 (680)
.+...+..+...|++++|++.+.+..+.... ...... . ...+..+...|.
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~-~----------------------------~~~~~~~~~~~~ 126 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQ-F----------------------------LQWQYYVAAYVL 126 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHH-H----------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHH-H----------------------------HHHHHHHHHHHh
Confidence 3445566777888888888888777664321 111100 0 011122334445
Q ss_pred HcCCHHHHHHHHhhcCCC-----CCC--HhHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCC-----HHHHHHHHHHH
Q 037256 359 KCGDLDTAENMFNDIHPS-----ERN--VSSWNVLIAGYGMHGHGRKALEFFSQMLEE-GVKPD-----HITFTSILSAC 425 (680)
Q Consensus 359 k~g~~~~A~~~f~~~~~~-----~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~-----~~t~~~ll~a~ 425 (680)
..|++++|...|++.... .+. ..+|+.+...|...|++++|+..|++..+. ...|+ ..++..+...|
T Consensus 127 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y 206 (293)
T 2qfc_A 127 KKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKAL 206 (293)
T ss_dssp TSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHH
Confidence 555666666655544211 111 235566666666666666666666665521 01111 13555566666
Q ss_pred HccCCHHHHHHHHHHhhhc----CCCc-ChHHHHHHHHHHHhcCCHHHH-HHHHHh
Q 037256 426 SHAGLIDEGRKCFADMTKL----SVKP-EVKHYACMVDMLGRAGCLYEA-FDMIKQ 475 (680)
Q Consensus 426 ~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A-~~~~~~ 475 (680)
...|++++|...+++..+. +... -...|..+...|.+.|++++| ...+++
T Consensus 207 ~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 207 YLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 6666666666666665543 1111 144566666666666666666 444443
No 131
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.30 E-value=1.9e-06 Score=75.61 Aligned_cols=100 Identities=9% Similarity=-0.021 Sum_probs=65.4
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHH
Q 037256 380 VSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPD-HITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVD 458 (680)
Q Consensus 380 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 458 (680)
...|..+...+.+.|++++|+..|++..+ ..|+ ...|..+..++...|++++|...|++..+.. +.+...|..+..
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 44566666677777777777777777776 3454 3466666667777777777777777776653 334556666777
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCCCH
Q 037256 459 MLGRAGCLYEAFDMIKQM-PLPPND 482 (680)
Q Consensus 459 ~~~~~g~~~~A~~~~~~m-~~~p~~ 482 (680)
+|.+.|++++|.+.|++. .+.||.
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 777777777777777664 333443
No 132
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.28 E-value=5.7e-05 Score=74.56 Aligned_cols=170 Identities=9% Similarity=-0.068 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CH------hHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCC--HH
Q 037256 349 LRNAVMDMYAKCGDLDTAENMFNDIHPSER-NV------SSWNVLIAGYGMHGHGRKALEFFSQMLEEGV---KPD--HI 416 (680)
Q Consensus 349 ~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~--~~ 416 (680)
.+...+..+...|++++|.+.+.+.....+ +. ..+..+...+...|++++|+..+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 444567788899999999999986633322 11 2244466677888999999999999886321 122 34
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhhc----CCCc--ChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHH
Q 037256 417 TFTSILSACSHAGLIDEGRKCFADMTKL----SVKP--EVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLL 490 (680)
Q Consensus 417 t~~~ll~a~~~~g~~~~a~~~~~~m~~~----~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~ 490 (680)
+++.+...|...|++++|..+|++..+. +..+ ....|..+...|.+.|++++|++.+++.-
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal------------- 223 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI------------- 223 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHH-------------
Confidence 7888889999999999999999998743 2122 12588889999999999999999998741
Q ss_pred HHHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHH-HHHHHHHHh
Q 037256 491 ACRIHGEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREV-GKLREDMKN 539 (680)
Q Consensus 491 a~~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 539 (680)
..... ....+.-...|..++.+|.+.|++++| ...+++...
T Consensus 224 -------~~~~~-~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 224 -------EISCR-INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp -------HHHHH-TTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred -------HHHHh-cCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 00000 001111145788999999999999999 777777653
No 133
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.27 E-value=1e-05 Score=68.66 Aligned_cols=93 Identities=12% Similarity=0.086 Sum_probs=53.2
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHH
Q 037256 380 VSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKP-DHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVD 458 (680)
Q Consensus 380 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 458 (680)
...|..+...+...|++++|++.|++..+ ..| +...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 44555556666666666666666666655 233 33455555555666666666666666655542 234455555666
Q ss_pred HHHhcCCHHHHHHHHHh
Q 037256 459 MLGRAGCLYEAFDMIKQ 475 (680)
Q Consensus 459 ~~~~~g~~~~A~~~~~~ 475 (680)
.|.+.|++++|.+.+++
T Consensus 93 ~~~~~~~~~~A~~~~~~ 109 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQK 109 (133)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHH
Confidence 66666666666655554
No 134
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.25 E-value=1.6e-05 Score=67.10 Aligned_cols=92 Identities=16% Similarity=0.089 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHH
Q 037256 381 SSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKP-DHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDM 459 (680)
Q Consensus 381 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 459 (680)
..|..+...+...|++++|+..|++.... .| +...+..+...+...|++++|.+.++...+.. +.+...+..+...
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 34555555556666666666666666553 23 33455555555666666666666666655542 2334555566666
Q ss_pred HHhcCCHHHHHHHHHh
Q 037256 460 LGRAGCLYEAFDMIKQ 475 (680)
Q Consensus 460 ~~~~g~~~~A~~~~~~ 475 (680)
+.+.|++++|.+.+++
T Consensus 90 ~~~~~~~~~A~~~~~~ 105 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKK 105 (131)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHH
Confidence 6666666666655544
No 135
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.24 E-value=1.6e-05 Score=68.89 Aligned_cols=95 Identities=8% Similarity=0.014 Sum_probs=66.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHH
Q 037256 417 TFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHG 496 (680)
Q Consensus 417 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~ 496 (680)
.+..+...+...|++++|...|+...+.. +.+...|..+..+|.+.|++++|+..+++
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~--------------------- 77 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSY--------------------- 77 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH---------------------
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHH---------------------
Confidence 44445556666777777777777766543 34556666677777777777777666654
Q ss_pred HHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 037256 497 EIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKN 539 (680)
Q Consensus 497 ~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 539 (680)
+++++|+++..+..++.+|...|++++|.+.+++..+
T Consensus 78 ------al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 78 ------GALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp ------HHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------HHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456777888888888888888888888888887765
No 136
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.21 E-value=1.4e-06 Score=80.69 Aligned_cols=156 Identities=10% Similarity=-0.052 Sum_probs=100.4
Q ss_pred HHHHHcCCHHHHHHHHhhcCCC-CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-----------------H
Q 037256 355 DMYAKCGDLDTAENMFNDIHPS-ERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH-----------------I 416 (680)
Q Consensus 355 ~~y~k~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----------------~ 416 (680)
......|++++|.+.|+.-... ......|..+...+...|++++|+..|++..+. .|+. .
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp ----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HhcccccchhhHHHHHHHHHHH
Confidence 3344456666666666533111 113456777788888899999999999988873 3321 5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHH
Q 037256 417 TFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHG 496 (680)
Q Consensus 417 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~ 496 (680)
.+..+..++...|++++|...++...+.. +.+...+..+..+|...|++++|.+.|++
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~--------------------- 147 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYK--------------------- 147 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH---------------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHH---------------------
Confidence 67777778888999999999999888763 44677788888889999999988887765
Q ss_pred HHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHH-HHHHHHHhC
Q 037256 497 EIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVG-KLREDMKNK 540 (680)
Q Consensus 497 ~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~~ 540 (680)
+++++|+++..+..++.++...++.+++. ..++.|-.+
T Consensus 148 ------al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 148 ------AASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp ------HHHHSTTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred ------HHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34567888888888888888888877776 555555443
No 137
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.21 E-value=1.2e-05 Score=74.22 Aligned_cols=48 Identities=13% Similarity=-0.053 Sum_probs=25.5
Q ss_pred hcCCHHHHHH---HHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 037256 258 RCGNVEKARL---VFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQN 305 (680)
Q Consensus 258 ~~g~~~~A~~---~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 305 (680)
..|++++|.+ .+..-+.....++..+...+...|++++|...+++..+
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 54 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQ 54 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 3455666665 44332223445566666666666666666666666543
No 138
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.18 E-value=3.2e-05 Score=64.45 Aligned_cols=114 Identities=18% Similarity=0.256 Sum_probs=77.0
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHhhcCCCC-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037256 347 ATLRNAVMDMYAKCGDLDTAENMFNDIHPSE-RNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSAC 425 (680)
Q Consensus 347 ~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 425 (680)
...+..+...|.+.|++++|.+.|+++.... .+..+|..+...+...|++++|+..|+++.+.. +.+..++..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 4556667777777788888877777764333 346677777778888888888888888877742 23455677777778
Q ss_pred HccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHh
Q 037256 426 SHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGR 462 (680)
Q Consensus 426 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 462 (680)
...|++++|...++++.+.. +.+...+..+...+.+
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHh
Confidence 88888888888888777653 2334444455444443
No 139
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.17 E-value=3.9e-05 Score=64.97 Aligned_cols=118 Identities=10% Similarity=-0.028 Sum_probs=91.3
Q ss_pred CCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHH
Q 037256 344 KIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKP-DHITFTSI 421 (680)
Q Consensus 344 ~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~l 421 (680)
+.+...+..+...|.+.|++++|.+.|++.....| +...|..+...|...|++++|++.+++..+. .| +...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL--EPTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCchHHHHHH
Confidence 34566777788888889999999999988755544 6778888888899999999999999998884 44 45677888
Q ss_pred HHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcC
Q 037256 422 LSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAG 464 (680)
Q Consensus 422 l~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 464 (680)
..++...|++++|.+.|++..+.. +.+...+..+..++.+.|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 888899999999999999888753 234456666666666554
No 140
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.17 E-value=1.5e-05 Score=78.36 Aligned_cols=88 Identities=11% Similarity=-0.053 Sum_probs=55.2
Q ss_pred HHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCCh
Q 037256 217 VASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEK---RDLISWNSMLTGYIQNGQA 293 (680)
Q Consensus 217 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~ 293 (680)
+...+...|++++|...+..+++.. +.+...+..+..+|.+.|++++|...+++..+ .+...|..+..+|...|++
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 88 (281)
T 2c2l_A 10 QGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESY 88 (281)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 3334444444444444444444432 23455666677777777777777777777654 3456677777778888888
Q ss_pred hHHHHHHHHHHh
Q 037256 294 SEALLLFDEMQN 305 (680)
Q Consensus 294 ~~A~~~~~~m~~ 305 (680)
++|+..|++..+
T Consensus 89 ~~A~~~~~~al~ 100 (281)
T 2c2l_A 89 DEAIANLQRAYS 100 (281)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888777665
No 141
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.17 E-value=2.4e-05 Score=69.32 Aligned_cols=126 Identities=10% Similarity=0.001 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 037256 348 TLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKP-DHITFTSILSAC 425 (680)
Q Consensus 348 ~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~ 425 (680)
..+..+...+...|++++|...|++.....| +...|..+...|...|++++|++.+++..+. .| +...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHH
Confidence 3455566777778888888888877643333 5677777888888888888888888888774 34 345677777778
Q ss_pred HccCCHHHHHHHHHHhhhcCCCcChHHH--HHHHHHHHhcCCHHHHHHHHHhC
Q 037256 426 SHAGLIDEGRKCFADMTKLSVKPEVKHY--ACMVDMLGRAGCLYEAFDMIKQM 476 (680)
Q Consensus 426 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m 476 (680)
...|++++|...|++..+.. +.+...+ ..++..+.+.|++++|++.+.+.
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 88888888888888877652 2233333 33344466778888887777653
No 142
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.16 E-value=2e-05 Score=66.66 Aligned_cols=106 Identities=11% Similarity=0.084 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 037256 348 TLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPD-HITFTSILSAC 425 (680)
Q Consensus 348 ~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~ 425 (680)
..+......|.+.|++++|.+.|++.....| +...|..+..+|.+.|++++|++.|++.++ +.|+ ...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIR--LDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHH--hhhhhhHHHHHHHHHH
Confidence 3455667778888888888888887744444 577788888888888888888888888887 4554 44777788888
Q ss_pred HccCCHHHHHHHHHHhhhcCCCcChHHHHHH
Q 037256 426 SHAGLIDEGRKCFADMTKLSVKPEVKHYACM 456 (680)
Q Consensus 426 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 456 (680)
...|++++|.+.|++..+.. +-+...+..|
T Consensus 92 ~~~~~~~~A~~~~~~al~l~-P~~~~a~~~l 121 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVD-PSNEEAREGV 121 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC-cCCHHHHHHH
Confidence 88888888888888887753 2234444333
No 143
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.16 E-value=9.6e-06 Score=74.88 Aligned_cols=147 Identities=12% Similarity=0.011 Sum_probs=64.5
Q ss_pred cCChHHHHH---HHhcCCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHc----CCCC-CHhHHHHHHHHHhccCChHH
Q 037256 158 CGQTDDGCK---VFDEMSVRDLVSWTVMITAYEQAEKPEEALILFQKTQQE----GLLS-DSVTIVSVASAVGQLGDVLK 229 (680)
Q Consensus 158 ~g~~~~A~~---~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~ 229 (680)
.|++++|.+ .+..-+.....+++.+...+...|++++|+..|++.... +..| ....+..+...+...|++++
T Consensus 5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 84 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDA 84 (203)
T ss_dssp --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 344555554 333322223344555555555555555555555554431 1111 11233333444444445444
Q ss_pred HHHHHHHHHHcc--CC----CChhHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHHcCChh
Q 037256 230 AQAVHGYAICNA--FL----EDLCIQNSIVAMYARCGNVEKARLVFDMMEK-----RD----LISWNSMLTGYIQNGQAS 294 (680)
Q Consensus 230 a~~~~~~~~~~g--~~----~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~-----~~----~~~~~~li~~~~~~g~~~ 294 (680)
|...+...++.. .. ....++..+...|...|++++|...+++... .+ ..++..+...+...|+++
T Consensus 85 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 164 (203)
T 3gw4_A 85 ARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLL 164 (203)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHH
Confidence 444444433320 00 0122344455555555555555555554321 11 122344555555666666
Q ss_pred HHHHHHHHHH
Q 037256 295 EALLLFDEMQ 304 (680)
Q Consensus 295 ~A~~~~~~m~ 304 (680)
+|.+.+++..
T Consensus 165 ~A~~~~~~al 174 (203)
T 3gw4_A 165 EAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666555544
No 144
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.16 E-value=0.0012 Score=65.65 Aligned_cols=174 Identities=11% Similarity=-0.042 Sum_probs=104.8
Q ss_pred HHHHhCCCccHHHHHHHHHHHcCCCCCHh-HHHHHHHHHhccC-ChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhc-C
Q 037256 184 TAYEQAEKPEEALILFQKTQQEGLLSDSV-TIVSVASAVGQLG-DVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARC-G 260 (680)
Q Consensus 184 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~-g 260 (680)
....+.+..++|++++.+++..+ |+.. .++.--..+...+ .++++...++.+++.. +.+..+|+--...+.+. +
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~ 138 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISP 138 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcC
Confidence 33344455567888888887753 4433 3444444444555 4777777777777654 34555666655555555 5
Q ss_pred -CHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChh--------HHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcc-
Q 037256 261 -NVEKARLVFDMMEK---RDLISWNSMLTGYIQNGQAS--------EALLLFDEMQNSDCKPNPVTALILVSACTYLGS- 327 (680)
Q Consensus 261 -~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~- 327 (680)
+.+++.++++.+.+ +|..+|+.-...+.+.|.++ ++++.+.++.+.. +-|...|+.......+.+.
T Consensus 139 ~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 139 QDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp SCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTC
T ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcccc
Confidence 67778888887775 35566766555555555555 7777777777654 3355566555555555553
Q ss_pred ------hHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCC
Q 037256 328 ------RQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGD 362 (680)
Q Consensus 328 ------~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~ 362 (680)
++++.+....++... +.|...|+-+-..+.+.|+
T Consensus 218 ~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred ccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 455666666665554 4456666665555555554
No 145
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.15 E-value=1.3e-05 Score=70.16 Aligned_cols=94 Identities=15% Similarity=0.054 Sum_probs=55.7
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHH
Q 037256 380 VSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKP-DHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVD 458 (680)
Q Consensus 380 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 458 (680)
...+..+...+.+.|++++|+..|++... ..| +...|..+..++...|++++|...|++..+.. +.+...+..+..
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCV--LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHH--cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 34455555666666666666666666665 234 33455555556666666666666666666543 234455556666
Q ss_pred HHHhcCCHHHHHHHHHhC
Q 037256 459 MLGRAGCLYEAFDMIKQM 476 (680)
Q Consensus 459 ~~~~~g~~~~A~~~~~~m 476 (680)
+|...|++++|.+.|++.
T Consensus 98 ~~~~~g~~~~A~~~~~~a 115 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLA 115 (148)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 666666666666666554
No 146
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.12 E-value=0.0016 Score=64.87 Aligned_cols=224 Identities=8% Similarity=0.007 Sum_probs=149.2
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccC-ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 037256 78 WNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNS-LILEGKVVHGDIIRTGFLSDSYVQAALVDMYA 156 (680)
Q Consensus 78 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~ 156 (680)
|+.+-....+.+..++|++++++++...+. +...|+.--..+...+ .++++...++.+++.. +.+..+|+.-...+.
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 444444455566667899999999876422 3445666666666677 5899999999998865 556778887777777
Q ss_pred hc-C-ChHHHHHHHhcCCCC---ChhHHHHHHHHHHhCCCcc--------HHHHHHHHHHHcCCCCCHhHHHHHHHHHhc
Q 037256 157 KC-G-QTDDGCKVFDEMSVR---DLVSWTVMITAYEQAEKPE--------EALILFQKTQQEGLLSDSVTIVSVASAVGQ 223 (680)
Q Consensus 157 ~~-g-~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 223 (680)
+. + +.+++++.++.+.+. |-.+|+--...+.+.|.++ ++++.++++.+.. +-|...|+.....+.+
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~ 213 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVS 213 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTT
T ss_pred HhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 66 6 888999999888754 5567776555555555666 8999999988865 3466677776666666
Q ss_pred cCC-------hHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCH--------------------HHHHHHHHhcCC--
Q 037256 224 LGD-------VLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNV--------------------EKARLVFDMMEK-- 274 (680)
Q Consensus 224 ~~~-------~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~--------------------~~A~~~f~~m~~-- 274 (680)
.+. ++++.+....+++.. +.|...|+-+-..+.+.|+- ....++..++..
T Consensus 214 l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (349)
T 3q7a_A 214 RPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDP 292 (349)
T ss_dssp STTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-C
T ss_pred ccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcc
Confidence 665 566777777777654 55677777766666666543 333333333322
Q ss_pred -------CChhHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 037256 275 -------RDLISWNSMLTGYIQNGQASEALLLFDEMQN 305 (680)
Q Consensus 275 -------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 305 (680)
+....+..+...|...|+.++|.++++.+.+
T Consensus 293 ~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 293 LPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 3445666677777777777777777777654
No 147
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.09 E-value=4.1e-05 Score=64.40 Aligned_cols=118 Identities=11% Similarity=0.013 Sum_probs=86.5
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 037256 346 DATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPD-HITFTSILS 423 (680)
Q Consensus 346 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~ 423 (680)
+...+..+...+...|++++|...|++.....| +...|..+...|...|++++|++.+++..+. .|+ ...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCHHHHHHHHH
Confidence 345566677777888888888888887643333 5677888888888888888888888888874 344 457777777
Q ss_pred HHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCH
Q 037256 424 ACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCL 466 (680)
Q Consensus 424 a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 466 (680)
.+...|++++|...|++..+.. +.+...+..+..++.+.|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 8888888888888888887753 33556666777777766653
No 148
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.09 E-value=1.5e-05 Score=80.42 Aligned_cols=128 Identities=14% Similarity=0.010 Sum_probs=98.3
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCC----------------HhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 037256 346 DATLRNAVMDMYAKCGDLDTAENMFNDIHPSERN----------------VSSWNVLIAGYGMHGHGRKALEFFSQMLEE 409 (680)
Q Consensus 346 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~----------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 409 (680)
+...+..+...|.+.|++++|...|++.....|+ ...|..+..+|.+.|++++|+..|++.++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3455666777777888888888888776443443 478888888999999999999999999884
Q ss_pred CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHH-HHHHhC
Q 037256 410 GVKPD-HITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAF-DMIKQM 476 (680)
Q Consensus 410 g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~-~~~~~m 476 (680)
.|+ ...+..+..++...|++++|...|++..+.. +.+...+..+..++.+.|+.++|. ..+++|
T Consensus 226 --~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 226 --DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 454 5578888888999999999999999988764 345677888888888888888883 455444
No 149
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.07 E-value=1.8e-05 Score=71.46 Aligned_cols=117 Identities=10% Similarity=0.127 Sum_probs=49.9
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHH-HHHcCCH--HHH
Q 037256 290 NGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDM-YAKCGDL--DTA 366 (680)
Q Consensus 290 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~-y~k~g~~--~~A 366 (680)
.|++++|+..|++..+.. +.+...+..+...+...|+++.|...+..+.+.. +.+...+..+..+ |.+.|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 344444444444444322 2233333334444444444444444444443332 2233344444444 4444554 555
Q ss_pred HHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 037256 367 ENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLE 408 (680)
Q Consensus 367 ~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 408 (680)
...|++.....| +...|..+...|...|++++|...|++..+
T Consensus 101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 555554422222 244445555555555555555555555554
No 150
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.04 E-value=0.001 Score=65.89 Aligned_cols=188 Identities=10% Similarity=0.095 Sum_probs=110.4
Q ss_pred hHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcC--CHHHHHHHHhhcCCC-CCCHhHHHHHHHHHHhcCC-hHHHHHHH
Q 037256 328 RQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCG--DLDTAENMFNDIHPS-ERNVSSWNVLIAGYGMHGH-GRKALEFF 403 (680)
Q Consensus 328 ~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g--~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~-~~~A~~l~ 403 (680)
++.+..++..+.... +-+..+|+.-.-.+.+.| .++++...++.+... ..|..+|+.-.-.+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 456666666666654 456677776666666766 377888888777443 4567778777777777777 47888888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHcc--------------CCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhc------
Q 037256 404 SQMLEEGVKPDHITFTSILSACSHA--------------GLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRA------ 463 (680)
Q Consensus 404 ~~m~~~g~~p~~~t~~~ll~a~~~~--------------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~------ 463 (680)
+++++.. .-|...|+.......+. +.++++++.++...... +-|...|+-+--.+.+.
T Consensus 169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCcccc
Confidence 8888743 22444555544444433 45677777777777653 44555565444444443
Q ss_pred -----CCHHHHHHHHHhC-CCCCCHhHHHHHHHHHHHH----------HHHHHHHHHccCCCCCchHHHHHH
Q 037256 464 -----GCLYEAFDMIKQM-PLPPNDSVWGALLLACRIH----------GEIAANYLFQLEPEHTGYFVLMSN 519 (680)
Q Consensus 464 -----g~~~~A~~~~~~m-~~~p~~~~~~~ll~a~~~~----------~~~~~~~~~~l~p~~~~~~~~l~~ 519 (680)
+.++++++.++++ .+.||. .|..+-.+.... ....+.++.+++|...+.|.-+..
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 317 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 3456666666665 445554 454222222111 233455666667765555544433
No 151
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.02 E-value=0.0001 Score=63.65 Aligned_cols=95 Identities=14% Similarity=0.033 Sum_probs=63.0
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHH
Q 037256 379 NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPD----HITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYA 454 (680)
Q Consensus 379 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 454 (680)
+...|..+...+...|++++|++.|++..+ ..|+ ...+..+..++...|++++|...+++..+.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 455666666777777777777777777766 4555 3456666666777777777777777766642 23455666
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC
Q 037256 455 CMVDMLGRAGCLYEAFDMIKQM 476 (680)
Q Consensus 455 ~li~~~~~~g~~~~A~~~~~~m 476 (680)
.+..+|.+.|++++|.+.+++.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~a 125 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRC 125 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHH
Confidence 6777777777777777666654
No 152
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.99 E-value=2.1e-05 Score=70.92 Aligned_cols=114 Identities=11% Similarity=0.137 Sum_probs=54.8
Q ss_pred cCCHHHHHHHHhhcCCCC-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHH-HHccCCH--HHH
Q 037256 360 CGDLDTAENMFNDIHPSE-RNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKP-DHITFTSILSA-CSHAGLI--DEG 434 (680)
Q Consensus 360 ~g~~~~A~~~f~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a-~~~~g~~--~~a 434 (680)
.|++++|...|++..... .+...|..+...|...|++++|+..|++..+. .| +...+..+..+ +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 344444544444432222 23445555555555555555555555555552 23 22344444444 4455555 555
Q ss_pred HHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256 435 RKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM 476 (680)
Q Consensus 435 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 476 (680)
...++.+.+.. +.+...+..+...|.+.|++++|...+++.
T Consensus 101 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 141 (177)
T 2e2e_A 101 RAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKV 141 (177)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 55555555442 223444555555555566666665555543
No 153
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.98 E-value=4.7e-05 Score=62.10 Aligned_cols=97 Identities=14% Similarity=0.028 Sum_probs=60.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHH
Q 037256 417 TFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHG 496 (680)
Q Consensus 417 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~ 496 (680)
.+..+...+...|++++|...|++..+.. +.+...+..+...+.+.|++++|.+.+++.
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a-------------------- 66 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYV-------------------- 66 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH--------------------
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHH--------------------
Confidence 44445555556666666666666655542 234455566666666777777766666543
Q ss_pred HHHHHHHHccCCC--CCchHHHHHHHHHhc-CChhHHHHHHHHHHhCC
Q 037256 497 EIAANYLFQLEPE--HTGYFVLMSNIYAAS-NKWREVGKLREDMKNKG 541 (680)
Q Consensus 497 ~~~~~~~~~l~p~--~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~g 541 (680)
+++.|+ ++..+..++.+|... |++++|.+.++...+..
T Consensus 67 -------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 67 -------INVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp -------HHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred -------HHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 344565 666677777777777 77777777777776543
No 154
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.96 E-value=0.00011 Score=61.78 Aligned_cols=92 Identities=11% Similarity=0.049 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHH
Q 037256 382 SWNVLIAGYGMHGHGRKALEFFSQMLEEGVKP-DHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDML 460 (680)
Q Consensus 382 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 460 (680)
.|..+...+.+.|++++|+..|++..+. .| +...+..+..++...|++++|...+++..+.. +.+...|..+..+|
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 3444445555555555555555555552 23 23345555555555555555555555555442 22344555555555
Q ss_pred HhcCCHHHHHHHHHhC
Q 037256 461 GRAGCLYEAFDMIKQM 476 (680)
Q Consensus 461 ~~~g~~~~A~~~~~~m 476 (680)
...|++++|.+.+++.
T Consensus 83 ~~~~~~~~A~~~~~~a 98 (126)
T 3upv_A 83 IAVKEYASALETLDAA 98 (126)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHH
Confidence 5556655555555543
No 155
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.96 E-value=8.2e-05 Score=64.27 Aligned_cols=105 Identities=11% Similarity=0.016 Sum_probs=67.4
Q ss_pred HHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCC
Q 037256 369 MFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKP-DHITFTSILSACSHAGLIDEGRKCFADMTKLSV 446 (680)
Q Consensus 369 ~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 446 (680)
.|+++....| +...+..+...+.+.|++++|+..|++.... .| +...|..+..++...|++++|...|++..+..
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~- 82 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD- 82 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-
Confidence 3444433333 2345556666677777777777777777763 44 34466666667777777777777777777653
Q ss_pred CcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256 447 KPEVKHYACMVDMLGRAGCLYEAFDMIKQM 476 (680)
Q Consensus 447 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 476 (680)
+.+...+..+..+|...|++++|.+.+++.
T Consensus 83 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 112 (142)
T 2xcb_A 83 INEPRFPFHAAECHLQLGDLDGAESGFYSA 112 (142)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344556667777777777777777777654
No 156
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.95 E-value=0.00023 Score=58.43 Aligned_cols=93 Identities=15% Similarity=0.080 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHH
Q 037256 381 SSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKP-DHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDM 459 (680)
Q Consensus 381 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 459 (680)
..|..+...+...|++++|...|++.... .| +...+..+...+...|++++|...+++..+.. +.+...+..+...
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 44555566666666666666666666653 33 34455556666666677777777666666543 2345566666666
Q ss_pred HHhcCCHHHHHHHHHhC
Q 037256 460 LGRAGCLYEAFDMIKQM 476 (680)
Q Consensus 460 ~~~~g~~~~A~~~~~~m 476 (680)
+...|++++|.+.+++.
T Consensus 82 ~~~~~~~~~A~~~~~~~ 98 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEG 98 (118)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHH
Confidence 77777777776666654
No 157
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.95 E-value=6.8e-05 Score=63.41 Aligned_cols=91 Identities=10% Similarity=0.061 Sum_probs=40.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhhhc--CCCcC----hHHHHH
Q 037256 383 WNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH-ITFTSILSACSHAGLIDEGRKCFADMTKL--SVKPE----VKHYAC 455 (680)
Q Consensus 383 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~--~~~p~----~~~~~~ 455 (680)
+..+...|.+.|++++|++.|++.++ +.|+. ..|..+..+|...|++++|++.+++.++. ...++ ...|..
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34444444444555555555554444 23332 24444444445555555555555444432 10111 123444
Q ss_pred HHHHHHhcCCHHHHHHHHHh
Q 037256 456 MVDMLGRAGCLYEAFDMIKQ 475 (680)
Q Consensus 456 li~~~~~~g~~~~A~~~~~~ 475 (680)
+...+...|++++|++.|++
T Consensus 89 lg~~~~~~~~~~~A~~~~~k 108 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHR 108 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHH
Confidence 44555555555555555544
No 158
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.94 E-value=0.0001 Score=78.25 Aligned_cols=121 Identities=14% Similarity=0.098 Sum_probs=94.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcC
Q 037256 386 LIAGYGMHGHGRKALEFFSQMLEEGVKPD-HITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAG 464 (680)
Q Consensus 386 li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 464 (680)
+...+.+.|++++|++.|++..+ ..|+ ..++..+..++.+.|++++|.+.+++..+.. +.+...|..+..+|.+.|
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 33445678899999999999888 4565 5688888889999999999999999988864 445778888999999999
Q ss_pred CHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHHHHHHHHHHccCCCCCchHHHHHHH--HHhcCChhHHHHHHHH
Q 037256 465 CLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEIAANYLFQLEPEHTGYFVLMSNI--YAASNKWREVGKLRED 536 (680)
Q Consensus 465 ~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~~~~~~l~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 536 (680)
++++|++.+++. +++.|+++..+..++.+ +.+.|++++|++.+++
T Consensus 89 ~~~eA~~~~~~a---------------------------l~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 89 KFRAALRDYETV---------------------------VKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp CHHHHHHHHHHH---------------------------HHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred CHHHHHHHHHHH---------------------------HHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999998888653 45678888888888887 8888999999999884
No 159
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.93 E-value=5.9e-05 Score=63.81 Aligned_cols=103 Identities=11% Similarity=0.053 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--------HHH
Q 037256 348 TLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH--------ITF 418 (680)
Q Consensus 348 ~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--------~t~ 418 (680)
..+..+...|.+.|++++|.+.|++.....| +...|+.+..+|.+.|++++|++.+++.++. .|+. .+|
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV--GRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh--CcccchhhHHHHHHH
Confidence 3455677888888999999999888754444 4778888888899999999999999888763 3321 356
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHH
Q 037256 419 TSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYA 454 (680)
Q Consensus 419 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 454 (680)
..+..++...|++++|++.|++..+. .|+.....
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~ 120 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVK 120 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHH
Confidence 66777888889999999999887764 45655443
No 160
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.92 E-value=7.9e-05 Score=66.18 Aligned_cols=93 Identities=13% Similarity=0.035 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHH
Q 037256 381 SSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKP-DHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDM 459 (680)
Q Consensus 381 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 459 (680)
..|..+...|.+.|++++|++.|++..+ +.| +...+..+..++...|++++|...|++..+.. +.+...|..+..+
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALS--IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3444445555555555555555555554 223 23344444555555555555555555555432 2234445555555
Q ss_pred HHhcCCHHHHHHHHHhC
Q 037256 460 LGRAGCLYEAFDMIKQM 476 (680)
Q Consensus 460 ~~~~g~~~~A~~~~~~m 476 (680)
|.+.|++++|.+.+++.
T Consensus 89 ~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHH
Confidence 55555555555555544
No 161
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.92 E-value=9.5e-05 Score=63.09 Aligned_cols=97 Identities=6% Similarity=-0.027 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHH
Q 037256 415 HITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRI 494 (680)
Q Consensus 415 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~ 494 (680)
...+..+...+...|++++|...|+...+.. +.+...|..+...|...|++++|...+++
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~------------------- 68 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRR------------------- 68 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH-------------------
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHH-------------------
Confidence 4455556666666666666666666665543 33455666667777777777776665543
Q ss_pred HHHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 037256 495 HGEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKN 539 (680)
Q Consensus 495 ~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 539 (680)
+++++|+++..+..++.+|...|++++|.+.+++..+
T Consensus 69 --------al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 69 --------ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp --------HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------HHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3445677777777888888888888888888877765
No 162
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.92 E-value=4.8e-05 Score=63.78 Aligned_cols=93 Identities=5% Similarity=-0.098 Sum_probs=59.5
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHHHH
Q 037256 419 TSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEI 498 (680)
Q Consensus 419 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~ 498 (680)
..+...+.+.|++++|...|++..+.. +.+...|..+..++.+.|++++|+..+++
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~----------------------- 76 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNH----------------------- 76 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH-----------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH-----------------------
Confidence 334445556666666666666666542 23455566666666666666666555543
Q ss_pred HHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 037256 499 AANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKN 539 (680)
Q Consensus 499 ~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 539 (680)
+++++|+++..+..++.+|...|++++|...+++..+
T Consensus 77 ----al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 77 ----ARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLL 113 (121)
T ss_dssp ----HHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ----HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3556777777777777777777777777777777665
No 163
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.90 E-value=8.5e-05 Score=78.47 Aligned_cols=129 Identities=9% Similarity=0.023 Sum_probs=97.1
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHHccCCHHHHHHHHHHhhh
Q 037256 380 VSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPD----------------HITFTSILSACSHAGLIDEGRKCFADMTK 443 (680)
Q Consensus 380 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----------------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 443 (680)
...|..+...|.+.|++++|+..|++..+ +.|+ ...|..+..++.+.|++++|+..+++..+
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVS--WLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 44566777777778888888888887776 3343 35777888888899999999999999887
Q ss_pred cCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHh
Q 037256 444 LSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEIAANYLFQLEPEHTGYFVLMSNIYAA 523 (680)
Q Consensus 444 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~ 523 (680)
.. +.+...|..+..+|.+.|++++|+..|++ +++++|++..++..++.++.+
T Consensus 346 ~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~---------------------------al~l~P~~~~a~~~l~~~~~~ 397 (457)
T 1kt0_A 346 LD-SANEKGLYRRGEAQLLMNEFESAKGDFEK---------------------------VLEVNPQNKAARLQISMCQKK 397 (457)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH---------------------------HHTTC----CHHHHHHHHHHH
T ss_pred cC-CccHHHHHHHHHHHHHccCHHHHHHHHHH---------------------------HHHhCCCCHHHHHHHHHHHHH
Confidence 64 44677888888999999999998877765 456788899999999999999
Q ss_pred cCChhHHHH-HHHHHH
Q 037256 524 SNKWREVGK-LREDMK 538 (680)
Q Consensus 524 ~g~~~~A~~-~~~~m~ 538 (680)
.|+++++.+ .++.|-
T Consensus 398 ~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 398 AKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHH
Confidence 999988774 445554
No 164
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.90 E-value=0.0003 Score=60.61 Aligned_cols=111 Identities=14% Similarity=0.014 Sum_probs=84.5
Q ss_pred CchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHH
Q 037256 345 IDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERN----VSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKP-DHITFT 419 (680)
Q Consensus 345 ~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~ 419 (680)
.+...+..+...+.+.|++++|.+.|++.....|+ ...|..+...|...|++++|+..+++..+. .| +...+.
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~ 103 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVKALY 103 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHHHHH
Confidence 35667777888888889999999999888666676 577888888888999999999999988874 45 455777
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHH
Q 037256 420 SILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVD 458 (680)
Q Consensus 420 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 458 (680)
.+..++...|++++|...|++..+.. +.+...+..+..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLE-PKNKVFQEALRN 141 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-SSCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHH
Confidence 78888889999999999999888753 223444443333
No 165
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.88 E-value=0.00023 Score=63.15 Aligned_cols=97 Identities=11% Similarity=0.061 Sum_probs=76.6
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 037256 346 DATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPD-HITFTSILS 423 (680)
Q Consensus 346 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~ 423 (680)
+...+..+...|.+.|++++|.+.|++.....| +...|..+...|...|++++|+..|++..+ +.|+ ...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATV--VDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 456677788888888888888888888754444 577788888888888888888888888888 4454 457777888
Q ss_pred HHHccCCHHHHHHHHHHhhhc
Q 037256 424 ACSHAGLIDEGRKCFADMTKL 444 (680)
Q Consensus 424 a~~~~g~~~~a~~~~~~m~~~ 444 (680)
++...|++++|...|++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 888888888888888888775
No 166
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.88 E-value=0.00025 Score=58.22 Aligned_cols=96 Identities=16% Similarity=0.155 Sum_probs=71.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 037256 347 ATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKP-DHITFTSILSA 424 (680)
Q Consensus 347 ~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a 424 (680)
...+..+...+...|++++|...|++.....| +...|..+...|...|++++|...+++..+. .| +...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 34556667777788888888888887644333 5677777888888888888888888888874 34 35567777778
Q ss_pred HHccCCHHHHHHHHHHhhhc
Q 037256 425 CSHAGLIDEGRKCFADMTKL 444 (680)
Q Consensus 425 ~~~~g~~~~a~~~~~~m~~~ 444 (680)
+...|++++|.+.++...+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHc
Confidence 88888888888888887765
No 167
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.85 E-value=2.3e-05 Score=72.24 Aligned_cols=171 Identities=11% Similarity=0.033 Sum_probs=93.1
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcch
Q 037256 252 IVAMYARCGNVEKARLVFDMMEK---RDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSR 328 (680)
Q Consensus 252 Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 328 (680)
.+......|+++++.+.++.-.. .....|..+...+.+.|++++|+..|++..+.. |+...+... ..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~--------~~ 79 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQ--------IL 79 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCH--------HH
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchh--------hH
Confidence 33444455666666666654332 134567778888899999999999999988642 211100000 00
Q ss_pred HHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 037256 329 QLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQML 407 (680)
Q Consensus 329 ~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 407 (680)
..-. . .....++..+..+|.+.|++++|...|++.....| +...|..+..+|...|++++|++.|++..
T Consensus 80 ~~~~---~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 80 LDKK---K-------NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp HHHH---H-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHH---H-------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 0000 0 00134566677777888888888888877644333 56677778888888888888888888887
Q ss_pred HcCCCCCH-HHHHHHHHHHHccCCHHHHH-HHHHHhhhc
Q 037256 408 EEGVKPDH-ITFTSILSACSHAGLIDEGR-KCFADMTKL 444 (680)
Q Consensus 408 ~~g~~p~~-~t~~~ll~a~~~~g~~~~a~-~~~~~m~~~ 444 (680)
+ +.|+. ..+..+..++...++.+++. ..+..|...
T Consensus 150 ~--~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 150 S--LNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp H--HSTTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred H--HCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 7 44543 45666666666666666665 455555443
No 168
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.85 E-value=0.00016 Score=60.86 Aligned_cols=89 Identities=9% Similarity=0.037 Sum_probs=38.9
Q ss_pred HHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCC
Q 037256 353 VMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPD-HITFTSILSACSHAGL 430 (680)
Q Consensus 353 li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~ 430 (680)
+...+.+.|++++|...|++.....| +...|..+..+|.+.|++++|+..|++..+ +.|+ ...+..+..++...|+
T Consensus 10 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~ 87 (126)
T 3upv_A 10 EGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE--KDPNFVRAYIRKATAQIAVKE 87 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHhC
Confidence 33444444444444444444322222 234444444444444444444444444444 2232 2244444444444444
Q ss_pred HHHHHHHHHHhhh
Q 037256 431 IDEGRKCFADMTK 443 (680)
Q Consensus 431 ~~~a~~~~~~m~~ 443 (680)
+++|...|++..+
T Consensus 88 ~~~A~~~~~~al~ 100 (126)
T 3upv_A 88 YASALETLDAART 100 (126)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 169
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.85 E-value=0.0006 Score=71.17 Aligned_cols=121 Identities=11% Similarity=-0.020 Sum_probs=80.5
Q ss_pred HHHHcCCHHHHHHHHhhcCC------CCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHc--CC--CCCH-HHHHHHHH
Q 037256 356 MYAKCGDLDTAENMFNDIHP------SER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEE--GV--KPDH-ITFTSILS 423 (680)
Q Consensus 356 ~y~k~g~~~~A~~~f~~~~~------~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~--~p~~-~t~~~ll~ 423 (680)
.+...|+.+.|.++++.... ..+ -..++..+...|...|++++|..++++.... +. +|.. .++..+..
T Consensus 104 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (434)
T 4b4t_Q 104 FEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESK 183 (434)
T ss_dssp HCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHH
Confidence 33345566666665554411 111 1346777888888888888888888887653 11 2222 36777788
Q ss_pred HHHccCCHHHHHHHHHHhhhc--CCC-c-C--hHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256 424 ACSHAGLIDEGRKCFADMTKL--SVK-P-E--VKHYACMVDMLGRAGCLYEAFDMIKQM 476 (680)
Q Consensus 424 a~~~~g~~~~a~~~~~~m~~~--~~~-p-~--~~~~~~li~~~~~~g~~~~A~~~~~~m 476 (680)
.|...|++++|..++++.... .+. | . ...+..+...+...|++++|...+.+.
T Consensus 184 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 184 VYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 899999999999998887654 221 1 1 345677778888899999987776554
No 170
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.84 E-value=6.1e-05 Score=66.09 Aligned_cols=129 Identities=9% Similarity=0.003 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHhhcCCCC---CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHcC----CCCC-H
Q 037256 348 TLRNAVMDMYAKCGDLDTAENMFNDIHPSE---RN----VSSWNVLIAGYGMHGHGRKALEFFSQMLEEG----VKPD-H 415 (680)
Q Consensus 348 ~~~~~li~~y~k~g~~~~A~~~f~~~~~~~---~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p~-~ 415 (680)
.++..+...|...|++++|.+.|++..... ++ ..++..+...|...|++++|.+.+++..+.. -.+. .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 345566666777777777777776652221 11 2366777777888888888888888776521 1111 2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhhhc----CCC-cChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256 416 ITFTSILSACSHAGLIDEGRKCFADMTKL----SVK-PEVKHYACMVDMLGRAGCLYEAFDMIKQM 476 (680)
Q Consensus 416 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~----~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m 476 (680)
..+..+...+...|++++|.+.+++..+. +.. .....+..+...|...|++++|.+.+++.
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 35666677788888888888888877654 211 12345677788888889988888888764
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.81 E-value=0.00033 Score=58.68 Aligned_cols=94 Identities=12% Similarity=0.050 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhcC--CCcC----hHHHHH
Q 037256 382 SWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKLS--VKPE----VKHYAC 455 (680)
Q Consensus 382 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~--~~p~----~~~~~~ 455 (680)
.|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.. ..++ ...+..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34444445555555555555555555431 1123344444445555555555555555554431 0111 344555
Q ss_pred HHHHHHhcCCHHHHHHHHHhC
Q 037256 456 MVDMLGRAGCLYEAFDMIKQM 476 (680)
Q Consensus 456 li~~~~~~g~~~~A~~~~~~m 476 (680)
+...|.+.|++++|.+.+++.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~ 105 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKS 105 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHH
Confidence 555555555555555555543
No 172
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.80 E-value=0.0078 Score=62.55 Aligned_cols=284 Identities=10% Similarity=0.005 Sum_probs=146.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC-----CCh----hHHHHHHHHHHHcCChhHHHHHHHHHHh----CCCCCC-HhhH
Q 037256 250 NSIVAMYARCGNVEKARLVFDMMEK-----RDL----ISWNSMLTGYIQNGQASEALLLFDEMQN----SDCKPN-PVTA 315 (680)
Q Consensus 250 ~~Li~~y~~~g~~~~A~~~f~~m~~-----~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~t~ 315 (680)
..|...|.+.|++++|.+.+..+.+ ++. ...+.+-..+...|++++|..++++... .+..+. ..++
T Consensus 59 ~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 138 (434)
T 4b4t_Q 59 LELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLS 138 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHH
Confidence 4466666667777776666665532 111 1222333334445667777777666542 222333 3345
Q ss_pred HHHHHHHhhhcchHHHHHHHHHHHHc--CC---CCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCC---CCC-----HhH
Q 037256 316 LILVSACTYLGSRQLGRKFHGYIINS--NM---KIDATLRNAVMDMYAKCGDLDTAENMFNDIHPS---ERN-----VSS 382 (680)
Q Consensus 316 ~~ll~a~~~~g~~~~a~~i~~~~~~~--~~---~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~---~~~-----~~~ 382 (680)
..+...+...|+++.|..++..+... +. +....++..++.+|...|++++|...+++.... .++ ...
T Consensus 139 ~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 218 (434)
T 4b4t_Q 139 IKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAEL 218 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHH
Confidence 56666777777777777777666542 11 122456777788888888888888887765221 111 235
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCCHHHH----HHHHHHHHccCCHHHHHHHHHHhhhc--CCCcChHH
Q 037256 383 WNVLIAGYGMHGHGRKALEFFSQMLEE----GVKPDHITF----TSILSACSHAGLIDEGRKCFADMTKL--SVKPEVKH 452 (680)
Q Consensus 383 ~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~~t~----~~ll~a~~~~g~~~~a~~~~~~m~~~--~~~p~~~~ 452 (680)
+..+...+...|++++|...|.+..+. +........ ...+-+....+..+.....+...... ...|....
T Consensus 219 ~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (434)
T 4b4t_Q 219 DLMSGILHCEDKDYKTAFSYFFESFESYHNLTTHNSYEKACQVLKYMLLSKIMLNLIDDVKNILNAKYTKETYQSRGIDA 298 (434)
T ss_dssp HHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHCSSSSTTCCCHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhccchhHHHhHHHHHHHHHHhcchhhhH
Confidence 666677777888899888888777542 222111111 11111222223333333333322111 23455566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHhHH---HHHHHHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCCh
Q 037256 453 YACMVDMLGRAGCLYEAFDMIKQMP--LPPNDSVW---GALLLACRIHGEIAANYLFQLEPEHTGYFVLMSNIYAASNKW 527 (680)
Q Consensus 453 ~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~---~~ll~a~~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~ 527 (680)
+..++..+. .+.+....+.+.... ...|.... ..+..... +.....+ ..|-.......++..+.- ..
T Consensus 299 ~~~l~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~l~~~--~~~y~~i~l~~la~~l~~--~~ 370 (434)
T 4b4t_Q 299 MKAVAEAYN-NRSLLDFNTALKQYEKELMGDELTRSHFNALYDTLL---ESNLCKI--IEPFECVEISHISKIIGL--DT 370 (434)
T ss_dssp HHHHHHHHH-HTCHHHHHHHHHHTHHHHTCSHHHHHHHHHHHHHHH---HHHHHHH--HSSCSCEEHHHHHHHHTC--CH
T ss_pred HHHHHHHHH-hhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH---HHHHHHH--HHHHHhcCHHHHHHHhCc--CH
Confidence 777777664 445555555554431 12233221 11111111 1112222 345444455555554432 45
Q ss_pred hHHHHHHHHHHhCC
Q 037256 528 REVGKLREDMKNKG 541 (680)
Q Consensus 528 ~~A~~~~~~m~~~g 541 (680)
+++++.+..|...|
T Consensus 371 ~~~E~~l~~lI~~~ 384 (434)
T 4b4t_Q 371 QQVEGKLSQMILDK 384 (434)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCC
Confidence 67777777776544
No 173
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.80 E-value=0.00012 Score=59.54 Aligned_cols=95 Identities=12% Similarity=0.060 Sum_probs=56.3
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCc--ChHHHHHHH
Q 037256 380 VSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKLSVKP--EVKHYACMV 457 (680)
Q Consensus 380 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~li 457 (680)
...|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|.+.+++..+.. +. +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 3445555666666666666666666666532 1233455556666666666666666666666542 22 455666666
Q ss_pred HHHHhc-CCHHHHHHHHHhC
Q 037256 458 DMLGRA-GCLYEAFDMIKQM 476 (680)
Q Consensus 458 ~~~~~~-g~~~~A~~~~~~m 476 (680)
..+.+. |++++|.+.+++.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~ 103 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARA 103 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHH
Confidence 666666 6666666666654
No 174
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.76 E-value=0.00029 Score=60.00 Aligned_cols=95 Identities=9% Similarity=-0.089 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 037256 347 ATLRNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPD-HITFTSILSA 424 (680)
Q Consensus 347 ~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a 424 (680)
...+..+...|.+.|++++|...|++.....| +...|..+...|...|++++|+..+++..+. .|+ ...+..+..+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CchhHHHHHHHHHH
Confidence 34444444445555555555555544422222 2444455555555555555555555555442 222 2344444444
Q ss_pred HHccCCHHHHHHHHHHhhh
Q 037256 425 CSHAGLIDEGRKCFADMTK 443 (680)
Q Consensus 425 ~~~~g~~~~a~~~~~~m~~ 443 (680)
+...|++++|...|++..+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 5555555555555554443
No 175
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.76 E-value=7.3e-05 Score=75.46 Aligned_cols=95 Identities=8% Similarity=0.009 Sum_probs=47.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHH
Q 037256 417 TFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHG 496 (680)
Q Consensus 417 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~ 496 (680)
.|..+..++.+.|++++|...+++..+.. +.+...|..+..+|...|++++|.+.|++.
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~a-------------------- 290 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKA-------------------- 290 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHT--------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH--------------------
Confidence 56777778888888888888888887753 345677888888888888888888888765
Q ss_pred HHHHHHHHccCCCCCchHHHHHHHH-HhcCChhHHHHHHHHHHh
Q 037256 497 EIAANYLFQLEPEHTGYFVLMSNIY-AASNKWREVGKLREDMKN 539 (680)
Q Consensus 497 ~~~~~~~~~l~p~~~~~~~~l~~~~-~~~g~~~~A~~~~~~m~~ 539 (680)
++++|+++..+..|..+. ...+..+++.+.+++|..
T Consensus 291 -------l~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 291 -------QKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFK 327 (338)
T ss_dssp -------TC-----------------------------------
T ss_pred -------HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 234455555555555552 334455566666666544
No 176
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.75 E-value=0.00014 Score=60.85 Aligned_cols=91 Identities=8% Similarity=-0.076 Sum_probs=47.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHH
Q 037256 383 WNVLIAGYGMHGHGRKALEFFSQMLEEGVKPD-HITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLG 461 (680)
Q Consensus 383 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 461 (680)
+..+...+.+.|++++|+..|++..+ ..|+ ...+..+..++...|++++|...|++..+.. +.+...+..+...|.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 33344445555555555555555555 2342 2344445555555555555555555555442 223445555555555
Q ss_pred hcCCHHHHHHHHHhC
Q 037256 462 RAGCLYEAFDMIKQM 476 (680)
Q Consensus 462 ~~g~~~~A~~~~~~m 476 (680)
+.|++++|++.+++.
T Consensus 97 ~~g~~~~A~~~~~~a 111 (121)
T 1hxi_A 97 NEHNANAALASLRAW 111 (121)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHH
Confidence 555555555555543
No 177
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.75 E-value=0.0054 Score=60.70 Aligned_cols=165 Identities=12% Similarity=0.048 Sum_probs=77.0
Q ss_pred ChhHHHHHHHHHHHcCC--hhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcc-hHHHHHHHHHHHHcCCCCchHHHHH
Q 037256 276 DLISWNSMLTGYIQNGQ--ASEALLLFDEMQNSDCKPNPVTALILVSACTYLGS-RQLGRKFHGYIINSNMKIDATLRNA 352 (680)
Q Consensus 276 ~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~-~~~a~~i~~~~~~~~~~~~~~~~~~ 352 (680)
+..+|+.-...+.+.++ ++++++++.++.+.. +-|...|+.-.-.....|. .+.+.+.+..+++.. +.|...|+-
T Consensus 107 ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~ 184 (331)
T 3dss_A 107 SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHY 184 (331)
T ss_dssp CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHH
T ss_pred CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHH
Confidence 44445544444444442 455555555555432 2233344333333334444 244444544444443 334444444
Q ss_pred HHHHHHHc--------------CCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhc-----------CChHHHHHHHHHH
Q 037256 353 VMDMYAKC--------------GDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMH-----------GHGRKALEFFSQM 406 (680)
Q Consensus 353 li~~y~k~--------------g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~-----------g~~~~A~~l~~~m 406 (680)
....+.+. +.++++.+.+.+.....| |..+|+-+-..+.+. +..+++++.++++
T Consensus 185 R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~el 264 (331)
T 3dss_A 185 RSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKEL 264 (331)
T ss_dssp HHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHH
Confidence 44333333 235556666655533333 455565444443333 3456777777777
Q ss_pred HHcCCCCCHH-HHHHH---HHHHHccCCHHHHHHHHHHhhhc
Q 037256 407 LEEGVKPDHI-TFTSI---LSACSHAGLIDEGRKCFADMTKL 444 (680)
Q Consensus 407 ~~~g~~p~~~-t~~~l---l~a~~~~g~~~~a~~~~~~m~~~ 444 (680)
.+ ..||.. .+.++ +.+....|..++....+.++++.
T Consensus 265 le--~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 265 QE--LEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HH--HCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred Hh--hCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 77 556652 11111 11112345555666666666553
No 178
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.74 E-value=0.00017 Score=63.07 Aligned_cols=138 Identities=13% Similarity=0.065 Sum_probs=100.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCH----HHHHHHHHHHHccCCHHHHHHHHHHhhhc----CCCc-Ch
Q 037256 381 SSWNVLIAGYGMHGHGRKALEFFSQMLEEGVK-PDH----ITFTSILSACSHAGLIDEGRKCFADMTKL----SVKP-EV 450 (680)
Q Consensus 381 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~----~~~p-~~ 450 (680)
.++..+...|...|++++|+..+++..+.... ++. .++..+...+...|++++|...+++..+. +..+ ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 46778888899999999999999998763111 121 36777888899999999999999987764 1111 14
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHH
Q 037256 451 KHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREV 530 (680)
Q Consensus 451 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A 530 (680)
..+..+...+...|++++|.+.+++.- ..+. . ....+.....+..++.+|...|++++|
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~------------~~~~--------~-~~~~~~~~~~~~~la~~~~~~g~~~~A 148 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHL------------AIAQ--------E-LKDRIGEGRACWSLGNAYTALGNHDQA 148 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH------------HHHH--------H-TTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH------------HHHH--------H-ccchHhHHHHHHHHHHHHHHccCHHHH
Confidence 567788889999999999999987641 0000 0 000011134677899999999999999
Q ss_pred HHHHHHHHh
Q 037256 531 GKLREDMKN 539 (680)
Q Consensus 531 ~~~~~~m~~ 539 (680)
.+.+++..+
T Consensus 149 ~~~~~~a~~ 157 (164)
T 3ro3_A 149 MHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998764
No 179
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.72 E-value=0.00013 Score=61.34 Aligned_cols=27 Identities=4% Similarity=0.060 Sum_probs=12.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhh
Q 037256 417 TFTSILSACSHAGLIDEGRKCFADMTK 443 (680)
Q Consensus 417 t~~~ll~a~~~~g~~~~a~~~~~~m~~ 443 (680)
++..+..++...|++++|.+.|+...+
T Consensus 81 ~~~~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 81 AYARIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 334444444444444444444444443
No 180
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.67 E-value=0.00025 Score=75.20 Aligned_cols=117 Identities=6% Similarity=-0.069 Sum_probs=93.0
Q ss_pred cccCCCChHHHHHHhhhccCCCC-CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHH
Q 037256 51 KYTTYGEPNTARSLFNSIHNDKS-YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEG 129 (680)
Q Consensus 51 ~~~~~g~~~~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 129 (680)
.+.+.|++++|.+.|++..+..| +..+|+.+..+|.+.|++++|++.|++..+... -+..++..+..++...|++++|
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHH
Confidence 34455999999999999888777 577899999999999999999999999998743 2567788888899999999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHH--HHhcCChHHHHHHHh
Q 037256 130 KVVHGDIIRTGFLSDSYVQAALVDM--YAKCGQTDDGCKVFD 169 (680)
Q Consensus 130 ~~~~~~~~~~g~~~~~~~~~~Li~~--~~~~g~~~~A~~~f~ 169 (680)
.+.+++.++.. +.+...+..+..+ +.+.|++++|.+.++
T Consensus 94 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999875 3345556656555 788899999999988
No 181
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.65 E-value=0.00028 Score=72.00 Aligned_cols=122 Identities=8% Similarity=0.011 Sum_probs=79.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc--------------CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCC
Q 037256 383 WNVLIAGYGMHGHGRKALEFFSQMLEE--------------GVKPD-HITFTSILSACSHAGLIDEGRKCFADMTKLSVK 447 (680)
Q Consensus 383 ~~~li~~~~~~g~~~~A~~l~~~m~~~--------------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 447 (680)
|..+...+.+.|++++|++.|++..+. ...|. ...|..+..++.+.|++++|++.+++..+.. +
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 304 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-P 304 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-T
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-c
Confidence 444455555556666666555555541 02232 2466677777778888888888888877653 3
Q ss_pred cChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCCh
Q 037256 448 PEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEIAANYLFQLEPEHTGYFVLMSNIYAASNKW 527 (680)
Q Consensus 448 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~ 527 (680)
.+...|..+..+|.+.|++++|++.+++ +++++|++...+..+..++...++.
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~---------------------------Al~l~P~~~~~~~~l~~~~~~~~~~ 357 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKK---------------------------AQEIAPEDKAIQAELLKVKQKIKAQ 357 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHH---------------------------HHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHH---------------------------HHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 3566777777888888888887776654 3455677777777777777777766
Q ss_pred hHHHH
Q 037256 528 REVGK 532 (680)
Q Consensus 528 ~~A~~ 532 (680)
+++.+
T Consensus 358 ~~a~k 362 (370)
T 1ihg_A 358 KDKEK 362 (370)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 182
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.64 E-value=0.00042 Score=60.15 Aligned_cols=69 Identities=10% Similarity=-0.057 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHHHHHHHHHHccCCCCCchH----HHHHHHHHhcCC
Q 037256 451 KHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEIAANYLFQLEPEHTGYF----VLMSNIYAASNK 526 (680)
Q Consensus 451 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~~~~~~l~p~~~~~~----~~l~~~~~~~g~ 526 (680)
..|..+..++.+.|++++|+..+++. .+.+.+..+++|+++..| ..++.++...|+
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kA--------------------L~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr 117 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKA--------------------LHYFNRRGELNQDEGKLWISAVYSRALALDGLGR 117 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH--------------------HHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHH--------------------HHhhhccccCCCchHHHHHHHHHhHHHHHHHCCC
Confidence 37888889999999999998888753 223555667799999999 999999999999
Q ss_pred hhHHHHHHHHHHh
Q 037256 527 WREVGKLREDMKN 539 (680)
Q Consensus 527 ~~~A~~~~~~m~~ 539 (680)
+++|++.+++..+
T Consensus 118 ~eEAl~~y~kAle 130 (159)
T 2hr2_A 118 GAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999875
No 183
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.63 E-value=0.00042 Score=61.21 Aligned_cols=94 Identities=12% Similarity=0.057 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc--------C--------CCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhhhc
Q 037256 382 SWNVLIAGYGMHGHGRKALEFFSQMLEE--------G--------VKPDH-ITFTSILSACSHAGLIDEGRKCFADMTKL 444 (680)
Q Consensus 382 ~~~~li~~~~~~g~~~~A~~l~~~m~~~--------g--------~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 444 (680)
.|......+.+.|++++|+..|.+.+.. . ..|.. ..|..+..++.+.|++++|...++..++.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 4455555566666666666666665552 0 02332 35666777777888888888888887775
Q ss_pred CCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256 445 SVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM 476 (680)
Q Consensus 445 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 476 (680)
. +.+...|..+..+|...|++++|.+.+++.
T Consensus 93 ~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a 123 (162)
T 3rkv_A 93 E-ETNEKALFRRAKARIAAWKLDEAEEDLKLL 123 (162)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred C-CcchHHHHHHHHHHHHHhcHHHHHHHHHHH
Confidence 3 445667777788888888888887777664
No 184
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.62 E-value=0.00068 Score=56.89 Aligned_cols=89 Identities=15% Similarity=0.052 Sum_probs=48.2
Q ss_pred HHHHHHcCCHHHHHHHHhhcCCCCCCH----hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHH
Q 037256 354 MDMYAKCGDLDTAENMFNDIHPSERNV----SSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPD----HITFTSILSAC 425 (680)
Q Consensus 354 i~~y~k~g~~~~A~~~f~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~ll~a~ 425 (680)
...+.+.|++++|...|+++....|+. ..+..+...|...|++++|+..|++..+. .|+ ...+..+..++
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR--YPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHH
Confidence 344555566666666666553323322 24555555566666666666666666553 233 23444555555
Q ss_pred HccCCHHHHHHHHHHhhhc
Q 037256 426 SHAGLIDEGRKCFADMTKL 444 (680)
Q Consensus 426 ~~~g~~~~a~~~~~~m~~~ 444 (680)
...|++++|...|+.+.+.
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 6666666666666665553
No 185
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.62 E-value=0.00021 Score=75.49 Aligned_cols=127 Identities=13% Similarity=0.030 Sum_probs=98.7
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCC----------------HhHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 037256 347 ATLRNAVMDMYAKCGDLDTAENMFNDIHPSERN----------------VSSWNVLIAGYGMHGHGRKALEFFSQMLEEG 410 (680)
Q Consensus 347 ~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~----------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 410 (680)
...+..+...|.+.|++++|...|++.....|+ ...|..+..+|.+.|++++|+..+++.++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~-- 345 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG-- 345 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh--
Confidence 445666777888888888888888877443332 57888999999999999999999999998
Q ss_pred CCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHH-HHHHhC
Q 037256 411 VKPD-HITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAF-DMIKQM 476 (680)
Q Consensus 411 ~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~-~~~~~m 476 (680)
+.|+ ...|..+..++...|++++|...|++..+.. +-+...+..+..++.+.|+.++|. ..+.+|
T Consensus 346 ~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 346 LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4554 5588888899999999999999999998763 334567888888888888888876 345555
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.61 E-value=7e-05 Score=62.20 Aligned_cols=83 Identities=13% Similarity=0.093 Sum_probs=51.8
Q ss_pred cCCHHHHHHHHhhcCCC---CC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHH
Q 037256 360 CGDLDTAENMFNDIHPS---ER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPD-HITFTSILSACSHAGLIDEG 434 (680)
Q Consensus 360 ~g~~~~A~~~f~~~~~~---~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a 434 (680)
.|++++|...|++.... .| +...|..+...|...|++++|+..|++..+. .|+ ...+..+..++...|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHHH
Confidence 45666666666666443 12 2456666777777777777777777777763 343 34666666677777777777
Q ss_pred HHHHHHhhhc
Q 037256 435 RKCFADMTKL 444 (680)
Q Consensus 435 ~~~~~~m~~~ 444 (680)
...+++..+.
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777776665
No 187
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.57 E-value=0.00067 Score=56.91 Aligned_cols=91 Identities=13% Similarity=-0.008 Sum_probs=74.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcC---hHHHHH
Q 037256 383 WNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH----ITFTSILSACSHAGLIDEGRKCFADMTKLSVKPE---VKHYAC 455 (680)
Q Consensus 383 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~ 455 (680)
+..+...+...|++++|...|++..+. .|+. ..+..+..++...|++++|...|+...+.. +.+ ...+..
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~ 81 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLK 81 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHH
Confidence 445667788999999999999999984 3443 367778888999999999999999998863 222 566788
Q ss_pred HHHHHHhcCCHHHHHHHHHhC
Q 037256 456 MVDMLGRAGCLYEAFDMIKQM 476 (680)
Q Consensus 456 li~~~~~~g~~~~A~~~~~~m 476 (680)
+..+|.+.|++++|.+.+++.
T Consensus 82 la~~~~~~g~~~~A~~~~~~~ 102 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQV 102 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 889999999999999999876
No 188
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.56 E-value=0.0028 Score=68.44 Aligned_cols=164 Identities=10% Similarity=0.031 Sum_probs=114.8
Q ss_pred HHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccC-
Q 037256 363 LDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGH----------GRKALEFFSQMLEEGVKPD-HITFTSILSACSHAG- 429 (680)
Q Consensus 363 ~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g- 429 (680)
-++|.+.++.+....| +..+|+.--..+...|+ ++++++.++++.+. .|. ..+|..-...+.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccc
Confidence 3566777777644444 35567666666655565 78888888888873 454 346766666777777
Q ss_pred -CHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcC-CHHHHHHHHHhC-CCCC-CHhHHHHHHHHHHH-----------
Q 037256 430 -LIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAG-CLYEAFDMIKQM-PLPP-NDSVWGALLLACRI----------- 494 (680)
Q Consensus 430 -~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m-~~~p-~~~~~~~ll~a~~~----------- 494 (680)
+++++++.++++.+.. +-+...|+.-..++.+.| .++++++.++++ ...| |...|+-....+..
T Consensus 123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence 6688888888888764 445666776666677777 778888887776 4444 55667665554433
Q ss_pred --------HHHHHHHHHHccCCCCCchHHHHHHHHHhcCChhH
Q 037256 495 --------HGEIAANYLFQLEPEHTGYFVLMSNIYAASNKWRE 529 (680)
Q Consensus 495 --------~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~ 529 (680)
.+.+.+.++++++|+|.+++.-+.+++.+.++.++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 14556778899999999999999999999988555
No 189
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.54 E-value=0.00095 Score=57.93 Aligned_cols=104 Identities=13% Similarity=0.016 Sum_probs=71.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhcCCCCCC-------------HhHHHHHHHHHHhcCChHHHHHHHHHHHHc-----CC
Q 037256 350 RNAVMDMYAKCGDLDTAENMFNDIHPSERN-------------VSSWNVLIAGYGMHGHGRKALEFFSQMLEE-----GV 411 (680)
Q Consensus 350 ~~~li~~y~k~g~~~~A~~~f~~~~~~~~~-------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~ 411 (680)
+......+.+.|++++|...|++.....|+ ...|+.+..++.+.|++++|+..+++.++. .+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 344555666777777777777766333333 227888888888888888888888888872 12
Q ss_pred CCCHH-HH----HHHHHHHHccCCHHHHHHHHHHhhhc-----CCCcChHHH
Q 037256 412 KPDHI-TF----TSILSACSHAGLIDEGRKCFADMTKL-----SVKPEVKHY 453 (680)
Q Consensus 412 ~p~~~-t~----~~ll~a~~~~g~~~~a~~~~~~m~~~-----~~~p~~~~~ 453 (680)
.|+.. .| .....++...|++++|+..|++..+. |+.+.....
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~ 145 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERM 145 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 77764 66 77777888888888888888887653 444444433
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.40 E-value=0.00019 Score=72.39 Aligned_cols=143 Identities=10% Similarity=-0.020 Sum_probs=74.8
Q ss_pred hHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhc
Q 037256 314 TALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMH 393 (680)
Q Consensus 314 t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~ 393 (680)
.+..+...+...|+++.|...+..+++.. |+.. .+...|+.+++...+. ...|+.+..+|.+.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~-------~~~~~~~~~~~~~~l~--------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDF-------MFQLYGKYQDMALAVK--------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHH-------HHTCCHHHHHHHHHHH--------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccch-------hhhhcccHHHHHHHHH--------HHHHHHHHHHHHHc
Confidence 34444555556666666666666655432 2111 1112222333322221 12788889999999
Q ss_pred CChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHH-HhcCCHHHHHH
Q 037256 394 GHGRKALEFFSQMLEEGVKP-DHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDML-GRAGCLYEAFD 471 (680)
Q Consensus 394 g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~~~~A~~ 471 (680)
|++++|+..+++.++ +.| +...+..+..++...|++++|...|++..+.. +-+...+..+.... ...+..+++.+
T Consensus 244 g~~~~A~~~~~~al~--~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 244 KRYDEAIGHCNIVLT--EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp TCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998 456 45688888999999999999999999987652 22334444444442 23455566666
Q ss_pred HHHhC
Q 037256 472 MIKQM 476 (680)
Q Consensus 472 ~~~~m 476 (680)
+|.+|
T Consensus 321 ~~~~~ 325 (338)
T 2if4_A 321 MYKGI 325 (338)
T ss_dssp -----
T ss_pred HHHHh
Confidence 77666
No 191
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.38 E-value=0.0007 Score=69.05 Aligned_cols=118 Identities=8% Similarity=0.018 Sum_probs=78.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhcCC----------------C-CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 037256 351 NAVMDMYAKCGDLDTAENMFNDIHP----------------S-ERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKP 413 (680)
Q Consensus 351 ~~li~~y~k~g~~~~A~~~f~~~~~----------------~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 413 (680)
..+...|.+.|++++|.+.|++... . ..+...|+.+..+|.+.|++++|++.+++.++ +.|
T Consensus 227 ~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~--~~p 304 (370)
T 1ihg_A 227 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE--IDP 304 (370)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH--hCc
Confidence 3344455555555555555554422 1 12345677788888888888888888888887 455
Q ss_pred C-HHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHH
Q 037256 414 D-HITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFD 471 (680)
Q Consensus 414 ~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 471 (680)
+ ...+..+..++...|++++|...|++..+.. +.+...+..+..++.+.++.+++.+
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 4577777778888888888888888877753 2355666667777777777666643
No 192
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.38 E-value=0.00018 Score=59.63 Aligned_cols=85 Identities=8% Similarity=-0.029 Sum_probs=65.8
Q ss_pred CCChHHHHHHhhhccCC---CC-CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHH
Q 037256 55 YGEPNTARSLFNSIHND---KS-YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGK 130 (680)
Q Consensus 55 ~g~~~~A~~~f~~~~~~---~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 130 (680)
.|++++|+..|++.... .| +...|..+...+.+.|++++|+..|++..+..+. +...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 38888999999888877 35 4667888888999999999999999998876433 5667777788888889999999
Q ss_pred HHHHHHHHhC
Q 037256 131 VVHGDIIRTG 140 (680)
Q Consensus 131 ~~~~~~~~~g 140 (680)
..+...++..
T Consensus 82 ~~~~~al~~~ 91 (117)
T 3k9i_A 82 ELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 9888888764
No 193
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.36 E-value=0.00064 Score=71.70 Aligned_cols=132 Identities=11% Similarity=-0.011 Sum_probs=94.5
Q ss_pred HHHhcCChHHHHHHHHHHHHcC---CCC---CH-HHHHHHHHHHHccCCHHHHHHHHHHhhhc-----C-CCcC-hHHHH
Q 037256 389 GYGMHGHGRKALEFFSQMLEEG---VKP---DH-ITFTSILSACSHAGLIDEGRKCFADMTKL-----S-VKPE-VKHYA 454 (680)
Q Consensus 389 ~~~~~g~~~~A~~l~~~m~~~g---~~p---~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-----~-~~p~-~~~~~ 454 (680)
.+...|++++|+.++++.++.. +.| +. .+++.|..+|...|++++|..++++..+. | -.|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3557788888888888776531 223 33 37888888999999999999988887642 2 1222 45688
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHHHHHHHHHHccCCCCC---chHHHHHHHHHhcCChhHHH
Q 037256 455 CMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEIAANYLFQLEPEHT---GYFVLMSNIYAASNKWREVG 531 (680)
Q Consensus 455 ~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~~~~~~l~p~~~---~~~~~l~~~~~~~g~~~~A~ 531 (680)
.|...|...|++++|+.++++.- ...++ .+.|+.| .....|..++...|++++|+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al--------------------~i~~~--~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae 455 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAY--------------------AILLV--THGPSHPITKDLEAMRMQTEMELRMFRQNE 455 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH--------------------HHHHH--HTCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH--------------------HHHHH--HhCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999998750 11111 1344443 33457788889999999999
Q ss_pred HHHHHHHhCCC
Q 037256 532 KLREDMKNKGL 542 (680)
Q Consensus 532 ~~~~~m~~~g~ 542 (680)
.++..+++.-.
T Consensus 456 ~~~~~~~~~~~ 466 (490)
T 3n71_A 456 FMYHKMREAAL 466 (490)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999987543
No 194
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.27 E-value=0.0016 Score=57.38 Aligned_cols=114 Identities=15% Similarity=0.062 Sum_probs=66.1
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHhCC------CCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHH
Q 037256 277 LISWNSMLTGYIQNGQASEALLLFDEMQNSD------CKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLR 350 (680)
Q Consensus 277 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~ 350 (680)
...+......+.+.|++++|+..|.+....- -.|+...+ ..+ -+.+..++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~--------------------~~~----~~~~~~~~ 66 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW--------------------VEL----DRKNIPLY 66 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH--------------------HHH----HHTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH--------------------HHH----HHHHHHHH
Confidence 4456677777888888888888887766420 00100000 000 02234455
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 037256 351 NAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHI 416 (680)
Q Consensus 351 ~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 416 (680)
..+..+|.+.|++++|...+++.....| +...|..+..+|...|++++|+..|++..+ +.|+..
T Consensus 67 ~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~p~~~ 131 (162)
T 3rkv_A 67 ANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR--NHPAAA 131 (162)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCGGGH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCCCH
Confidence 6666666677777777776666543333 355666666667777777777777776666 455543
No 195
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.19 E-value=0.00058 Score=55.45 Aligned_cols=94 Identities=11% Similarity=0.101 Sum_probs=64.1
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcC-------h
Q 037256 379 NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKP-DHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPE-------V 450 (680)
Q Consensus 379 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~-------~ 450 (680)
+...|..+...+...|++++|++.|++..+. .| +...+..+..++...|++++|.+.+++..+. .|+ .
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~ 78 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRS 78 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHH
Confidence 3456677777777888888888888887773 44 4456777777788888888888888887764 233 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256 451 KHYACMVDMLGRAGCLYEAFDMIKQM 476 (680)
Q Consensus 451 ~~~~~li~~~~~~g~~~~A~~~~~~m 476 (680)
..+..+..++...|+.++|.+.++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 79 KLQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 44555666666666666666555554
No 196
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.01 E-value=0.0017 Score=53.24 Aligned_cols=77 Identities=13% Similarity=0.106 Sum_probs=46.5
Q ss_pred HHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhh
Q 037256 366 AENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPD-HITFTSILSACSHAGLIDEGRKCFADMTK 443 (680)
Q Consensus 366 A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 443 (680)
|.+.|++.....| +...|..+...|...|++++|+..|++..+. .|+ ...+..+..++...|++++|...|++..+
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4444554433333 4556666666677777777777777776663 343 34566666666677777777777766655
Q ss_pred c
Q 037256 444 L 444 (680)
Q Consensus 444 ~ 444 (680)
.
T Consensus 82 ~ 82 (115)
T 2kat_A 82 A 82 (115)
T ss_dssp H
T ss_pred h
Confidence 3
No 197
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.00 E-value=0.0011 Score=57.38 Aligned_cols=96 Identities=8% Similarity=0.031 Sum_probs=64.8
Q ss_pred ccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHHHHHHHHHHcc
Q 037256 427 HAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEIAANYLFQL 506 (680)
Q Consensus 427 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~~~~~~l 506 (680)
+.+.+++|.+.++...+.. +.+...|..+..++...|+++.+.+.++ ....|...+++++++
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~-----------------~~~eAi~~le~AL~l 75 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQ-----------------MIQEAITKFEEALLI 75 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHH-----------------HHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHh-----------------HHHHHHHHHHHHHHh
Confidence 3445566666666666543 3455556556556655555442222111 012256677888999
Q ss_pred CCCCCchHHHHHHHHHhcC-----------ChhHHHHHHHHHHhC
Q 037256 507 EPEHTGYFVLMSNIYAASN-----------KWREVGKLREDMKNK 540 (680)
Q Consensus 507 ~p~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~m~~~ 540 (680)
+|++..+|..++++|...| ++++|++.|++..+.
T Consensus 76 dP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 76 DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 9999999999999999875 899999999999874
No 198
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.98 E-value=0.0029 Score=66.69 Aligned_cols=120 Identities=10% Similarity=0.012 Sum_probs=86.0
Q ss_pred HHHcCCHHHHHHHHhhcCC-----CC---CC-HhHHHHHHHHHHhcCChHHHHHHHHHHHHc-----C-CCCCH-HHHHH
Q 037256 357 YAKCGDLDTAENMFNDIHP-----SE---RN-VSSWNVLIAGYGMHGHGRKALEFFSQMLEE-----G-VKPDH-ITFTS 420 (680)
Q Consensus 357 y~k~g~~~~A~~~f~~~~~-----~~---~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g-~~p~~-~t~~~ 420 (680)
+...|++++|+.++++... .. |+ ..+++.|...|...|++++|..++++.++- | -.|+. .+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4567888888877766521 12 22 457889999999999999999999887642 2 22443 37888
Q ss_pred HHHHHHccCCHHHHHHHHHHhhhc-----CC-Cc-ChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256 421 ILSACSHAGLIDEGRKCFADMTKL-----SV-KP-EVKHYACMVDMLGRAGCLYEAFDMIKQM 476 (680)
Q Consensus 421 ll~a~~~~g~~~~a~~~~~~m~~~-----~~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 476 (680)
|...|...|++++|..++++..+. |- .| .....+.+..++...|++++|+.++.++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~ 461 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKM 461 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999998887652 21 12 2344556667777888889998888776
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.98 E-value=0.00064 Score=55.19 Aligned_cols=95 Identities=14% Similarity=0.000 Sum_probs=59.5
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCc-------hhH
Q 037256 75 SFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSD-------SYV 147 (680)
Q Consensus 75 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-------~~~ 147 (680)
...|..+...+.+.|++++|++.|++..+..+ .+...+..+..++...|++++|...++..++.. |+ ...
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~ 80 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQP-QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHHH
Confidence 44566666777777777777777777766432 245556666666677777777777777766543 22 334
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCC
Q 037256 148 QAALVDMYAKCGQTDDGCKVFDEMS 172 (680)
Q Consensus 148 ~~~Li~~~~~~g~~~~A~~~f~~~~ 172 (680)
+..+...+...|+.+.|...|++++
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred HHHHHHHHHHHHhHhhhHhHHHHhH
Confidence 4555556666666666666666554
No 200
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.98 E-value=0.0013 Score=56.88 Aligned_cols=96 Identities=16% Similarity=0.112 Sum_probs=55.3
Q ss_pred chHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCC----------HHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhc--
Q 037256 327 SRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGD----------LDTAENMFNDIHPSER-NVSSWNVLIAGYGMH-- 393 (680)
Q Consensus 327 ~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~----------~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~-- 393 (680)
.+++|.+.++..++.. +.+...++.+..++.+.++ +++|...|++.....| +..+|..+..+|...
T Consensus 17 ~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~ 95 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF 95 (158)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcc
Confidence 3444444444444333 2334444444444444433 4577777776644444 355677777777665
Q ss_pred ---------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037256 394 ---------GHGRKALEFFSQMLEEGVKPDHITFTSILSAC 425 (680)
Q Consensus 394 ---------g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 425 (680)
|++++|++.|++.++ +.|+...|...+..+
T Consensus 96 l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 96 LTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT 134 (158)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred cCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 378888888888888 678776665555443
No 201
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.92 E-value=0.033 Score=63.18 Aligned_cols=102 Identities=13% Similarity=0.139 Sum_probs=60.0
Q ss_pred HHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHH
Q 037256 255 MYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKF 334 (680)
Q Consensus 255 ~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i 334 (680)
....+|+++.|.++.+.+. +...|..+...+.+.++++.|.+.|.++.. |..+...+...++.+....+
T Consensus 661 ~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~ 729 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTL 729 (814)
T ss_dssp HHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHH
Confidence 3455677777777765553 456777777777777777777777776643 22333344445555554444
Q ss_pred HHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhc
Q 037256 335 HGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDI 373 (680)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~ 373 (680)
-+.....|. ++.-..+|.++|++++|.+++.++
T Consensus 730 ~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 730 AKDAETTGK------FNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence 444444331 233344566677777777776655
No 202
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.89 E-value=0.0029 Score=50.49 Aligned_cols=65 Identities=8% Similarity=0.126 Sum_probs=55.2
Q ss_pred cChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCCh
Q 037256 448 PEVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEIAANYLFQLEPEHTGYFVLMSNIYAASNKW 527 (680)
Q Consensus 448 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~ 527 (680)
-+...+..+...|.+.|++++|++.|++ +++++|+++.+|..++.+|...|++
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~---------------------------al~~~p~~~~a~~~lg~~~~~~g~~ 57 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEE---------------------------LVETDPDYVGTYYHLGKLYERLDRT 57 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHH---------------------------HHHHSTTCTHHHHHHHHHHHHTTCH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHH---------------------------HHHhCCCcHHHHHHHHHHHHHcCCH
Confidence 3456777788888888888888777764 4577899999999999999999999
Q ss_pred hHHHHHHHHHHh
Q 037256 528 REVGKLREDMKN 539 (680)
Q Consensus 528 ~~A~~~~~~m~~ 539 (680)
++|.+.+++..+
T Consensus 58 ~~A~~~~~~al~ 69 (100)
T 3ma5_A 58 DDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998875
No 203
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.82 E-value=0.013 Score=50.00 Aligned_cols=89 Identities=11% Similarity=-0.020 Sum_probs=43.4
Q ss_pred HHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-
Q 037256 353 VMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGM----HGHGRKALEFFSQMLEEGVKPDHITFTSILSACSH- 427 (680)
Q Consensus 353 li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~- 427 (680)
|..+|...+.+++|.+.|++... ..+..++..|...|.. .++.++|++.|++..+.| +......|-..|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~-~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G 106 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACE-LNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAG 106 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCC
Confidence 33444444444445555544411 2344444445555544 455555555555555543 33344444444444
Q ss_pred ---cCCHHHHHHHHHHhhhcC
Q 037256 428 ---AGLIDEGRKCFADMTKLS 445 (680)
Q Consensus 428 ---~g~~~~a~~~~~~m~~~~ 445 (680)
.+++++|.++|++..+.|
T Consensus 107 ~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 107 KGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp SSSCCCHHHHHHHHHHHHHTT
T ss_pred CCCCcCHHHHHHHHHHHHHCC
Confidence 455566666665555544
No 204
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.82 E-value=0.026 Score=48.04 Aligned_cols=112 Identities=12% Similarity=0.037 Sum_probs=89.4
Q ss_pred CChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHH----cCCHHHH
Q 037256 291 GQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAK----CGDLDTA 366 (680)
Q Consensus 291 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k----~g~~~~A 366 (680)
+++++|++.|++..+.| .|+.. +-..+...+..+.|.+.+....+.| +...+..|..+|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 46788888898888877 44444 5556666677788888888888875 56778888888888 7899999
Q ss_pred HHHHhhcCCCCCCHhHHHHHHHHHHh----cCChHHHHHHHHHHHHcCC
Q 037256 367 ENMFNDIHPSERNVSSWNVLIAGYGM----HGHGRKALEFFSQMLEEGV 411 (680)
Q Consensus 367 ~~~f~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~ 411 (680)
.+.|++..+ ..++.++..|...|.. .++.++|.+.|++..+.|.
T Consensus 81 ~~~~~~Aa~-~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 81 AQYYSKACG-LNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHc-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999998832 3577888888888888 8899999999999988763
No 205
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.81 E-value=0.0037 Score=49.84 Aligned_cols=63 Identities=17% Similarity=0.227 Sum_probs=37.3
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhh
Q 037256 379 NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPD-HITFTSILSACSHAGLIDEGRKCFADMTK 443 (680)
Q Consensus 379 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 443 (680)
+...|..+...|...|++++|+..|++..+. .|+ ...|..+..++...|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3455666666666666666666666666653 343 23555556666666666666666666554
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.70 E-value=0.017 Score=44.34 Aligned_cols=62 Identities=23% Similarity=0.384 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhhhc
Q 037256 381 SSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKP-DHITFTSILSACSHAGLIDEGRKCFADMTKL 444 (680)
Q Consensus 381 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 444 (680)
..|..+...+...|++++|+..|++..+. .| +...+..+..++...|++++|...+++..+.
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34444555555555555555555555542 23 2334445555555555555555555555543
No 207
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.70 E-value=0.0028 Score=51.94 Aligned_cols=79 Identities=9% Similarity=0.040 Sum_probs=60.6
Q ss_pred HHHHHhhhccCCCC-CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHH
Q 037256 60 TARSLFNSIHNDKS-YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIR 138 (680)
Q Consensus 60 ~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 138 (680)
+|...|+......| +...|..+...+.+.|++++|+..|++..+... .+...+..+..++...|++++|...++..++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56677777776666 566788888888888999999988888877542 2455677777788888888888888888776
Q ss_pred h
Q 037256 139 T 139 (680)
Q Consensus 139 ~ 139 (680)
.
T Consensus 82 ~ 82 (115)
T 2kat_A 82 A 82 (115)
T ss_dssp H
T ss_pred h
Confidence 4
No 208
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.70 E-value=0.027 Score=60.67 Aligned_cols=131 Identities=11% Similarity=0.039 Sum_probs=91.6
Q ss_pred CChHHHHHHhhhccCCCC-CcchHHHHHHHHHhCCC----------chHHHHHHHHHHhCCCCCCcccHHHHHHHHhccC
Q 037256 56 GEPNTARSLFNSIHNDKS-YSFLWNTMIRAYANNGH----------CVETLELYSTMRRSGISSNSYTFPFVLKACASNS 124 (680)
Q Consensus 56 g~~~~A~~~f~~~~~~~p-~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 124 (680)
..-++|.+.++.+....| +..+|+.--..+...|+ ++++++.++++.+..++ +..+|..---++.+.+
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcc
Confidence 345677888888887777 45578776666666555 78888888888776443 5556776666677777
Q ss_pred --ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-ChHHHHHHHhcCCCC---ChhHHHHHHHHHHh
Q 037256 125 --LILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCG-QTDDGCKVFDEMSVR---DLVSWTVMITAYEQ 188 (680)
Q Consensus 125 --~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g-~~~~A~~~f~~~~~~---~~~~~~~li~~~~~ 188 (680)
+++++.+.++.+++.. +.+...|+.-...+.+.| ..+++.+.++++.+. |..+|+.....+.+
T Consensus 122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~ 190 (567)
T 1dce_A 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ 190 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHh
Confidence 5688888888888876 456777777777777777 777788887777653 55567666555544
No 209
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.62 E-value=0.0085 Score=62.12 Aligned_cols=126 Identities=11% Similarity=0.028 Sum_probs=87.8
Q ss_pred HHHHHccCCHHHHHHHHHHhhhc---CCCc----ChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHH
Q 037256 422 LSACSHAGLIDEGRKCFADMTKL---SVKP----EVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRI 494 (680)
Q Consensus 422 l~a~~~~g~~~~a~~~~~~m~~~---~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~ 494 (680)
+..+.+.|++++|..++++..+. -+.| ...+++.|..+|...|++++|+.++++.-
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L----------------- 356 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTM----------------- 356 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-----------------
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHH-----------------
Confidence 44456678888888888887653 1222 24578888999999999999999988650
Q ss_pred HHHHHHHHHH-ccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCCceeEEEECCEEEEEEeCCCCCcccHHH
Q 037256 495 HGEIAANYLF-QLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKGLKKPAAFSVIEYGKDIQGFHTADRVNPYWKEV 573 (680)
Q Consensus 495 ~~~~~~~~~~-~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i 573 (680)
...++.+ .-.|+-...+..|+.+|..+|++++|+.++++..+--. ..=+..||...++
T Consensus 357 ---~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~------------------~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 357 ---EPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMR------------------VTHGREHSLIEDL 415 (429)
T ss_dssp ---HHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH------------------HHTCTTSHHHHHH
T ss_pred ---HhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH------------------HhcCCCChHHHHH
Confidence 0111111 11233345688899999999999999999999865210 0113579999999
Q ss_pred HHHHHHHHHHHH
Q 037256 574 YKKVESMAVEIK 585 (680)
Q Consensus 574 ~~~~~~l~~~m~ 585 (680)
+..+.+...+|+
T Consensus 416 ~~~l~~~~~e~~ 427 (429)
T 3qwp_A 416 ILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 888888877775
No 210
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.53 E-value=0.052 Score=61.54 Aligned_cols=100 Identities=17% Similarity=0.140 Sum_probs=48.0
Q ss_pred HHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 037256 358 AKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKC 437 (680)
Q Consensus 358 ~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 437 (680)
..+|++++|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...++
T Consensus 663 l~~~~~~~A~~~~~~~----~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~ 729 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE----SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTL 729 (814)
T ss_dssp HHHTCHHHHHHHHTTC----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHH
T ss_pred hhcCCHHHHHHHHHhh----CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHH
Confidence 3455566665555443 2345566666666666666666666655432 22333333334444444444
Q ss_pred HHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256 438 FADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM 476 (680)
Q Consensus 438 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 476 (680)
-+.....| .++.-..+|.+.|++++|++++.++
T Consensus 730 ~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 730 AKDAETTG------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHcC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 33333322 1122233344455555555555554
No 211
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.48 E-value=0.012 Score=46.12 Aligned_cols=47 Identities=17% Similarity=0.090 Sum_probs=42.1
Q ss_pred HHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 037256 496 GEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKGL 542 (680)
Q Consensus 496 ~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 542 (680)
+...++++++++|+++.....++.++...|++++|+..|+++.+...
T Consensus 28 A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 28 VSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 45566778899999999999999999999999999999999998654
No 212
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.44 E-value=0.03 Score=42.94 Aligned_cols=56 Identities=14% Similarity=0.299 Sum_probs=21.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHH
Q 037256 249 QNSIVAMYARCGNVEKARLVFDMMEK---RDLISWNSMLTGYIQNGQASEALLLFDEMQ 304 (680)
Q Consensus 249 ~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 304 (680)
+..+...|.+.|++++|...|++..+ .+...|..+...+.+.|++++|...|++..
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 70 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33333444444444444444443321 123333333444444444444444444333
No 213
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.43 E-value=0.0016 Score=66.05 Aligned_cols=396 Identities=8% Similarity=0.058 Sum_probs=231.5
Q ss_pred hhhhHHHHHHhhhhhhhcccCCCChHHHHHHhhhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccH
Q 037256 34 TSGLINQALHLGAKIIIKYTTYGEPNTARSLFNSIHNDKSYSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTF 113 (680)
Q Consensus 34 ~~~~~~~li~~y~~~~~~~~~~g~~~~A~~~f~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 113 (680)
.+.+|+.|-.++.+ . |++.+|++.|-+. . |...|..+|.+..+.|.+++-++.+...++..- ++..=
T Consensus 53 ~p~VWs~LgkAqL~-~------~~v~eAIdsyIkA--~--Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~ID 119 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQ-K------GMVKEAIDSYIKA--D--DPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVE 119 (624)
T ss_dssp CCCCSSSHHHHTTT-S------SSCTTTTTSSCCC--S--CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTT
T ss_pred CccHHHHHHHHHHc-c------CchHHHHHHHHhC--C--ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccH
Confidence 67788888888887 6 8888888766443 3 556688899999999999999888876655432 44445
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---------------------
Q 037256 114 PFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQTDDGCKVFDEMS--------------------- 172 (680)
Q Consensus 114 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~--------------------- 172 (680)
+.|+-+|++.+++.+-++++. .|+..-...+.+-+...|.++.|.-+|..+.
T Consensus 120 teLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVda 192 (624)
T 3lvg_A 120 TELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDG 192 (624)
T ss_dssp HHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTT
T ss_pred HHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHH
Confidence 678889999888766544432 4555555666777777888888887777664
Q ss_pred ---CCChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCChHHHHHHHHHHHHccC-CCChhH
Q 037256 173 ---VRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGDVLKAQAVHGYAICNAF-LEDLCI 248 (680)
Q Consensus 173 ---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~ 248 (680)
..++.+|-.+-.+|...+++.-|--.--.+.- .|| .+..++..|-..|.+++-..+++..+ |+ ......
T Consensus 193 ArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGm 265 (624)
T 3lvg_A 193 ARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAAL--GLERAHMGM 265 (624)
T ss_dssp TTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHH
T ss_pred HHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHH
Confidence 23677888888888888887766444333321 111 12234455666677776666665544 22 235567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcC----CC-------ChhHHHHHHHHHHHcCChhHHHHHH-------------HHHH
Q 037256 249 QNSIVAMYARCGNVEKARLVFDMME----KR-------DLISWNSMLTGYIQNGQASEALLLF-------------DEMQ 304 (680)
Q Consensus 249 ~~~Li~~y~~~g~~~~A~~~f~~m~----~~-------~~~~~~~li~~~~~~g~~~~A~~~~-------------~~m~ 304 (680)
++-|.-.|+|-. .++-.+.++..- -| ....|.-++-.|.+-.+++.|.... .+..
T Consensus 266 FTELaILYsKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii 344 (624)
T 3lvg_A 266 FTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDII 344 (624)
T ss_dssp HHHHHHHHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTG
T ss_pred HHHHHHHHHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHH
Confidence 777777777763 333333332221 12 3445788888888888877665321 1111
Q ss_pred hCCCCCCHhh---------------HHHHHHHHhhhcchHHHHHHHHHHHH----------cCCCCchHHHHHHHHHHHH
Q 037256 305 NSDCKPNPVT---------------ALILVSACTYLGSRQLGRKFHGYIIN----------SNMKIDATLRNAVMDMYAK 359 (680)
Q Consensus 305 ~~g~~p~~~t---------------~~~ll~a~~~~g~~~~a~~i~~~~~~----------~~~~~~~~~~~~li~~y~k 359 (680)
.. ..|... ++-++.++...=+...+.++++..-. -.-..+..+-.++-+.|..
T Consensus 345 ~K--VaN~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IE 422 (624)
T 3lvg_A 345 TK--VANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFIT 422 (624)
T ss_dssp GG--CSCSHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHH
T ss_pred HH--cchHHHHHHHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 00 112122 23334444333333333333332110 0012245566677777887
Q ss_pred cCCHHHHHHHHhhcCCCCCCHh------------HHH-HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 037256 360 CGDLDTAENMFNDIHPSERNVS------------SWN-VLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACS 426 (680)
Q Consensus 360 ~g~~~~A~~~f~~~~~~~~~~~------------~~~-~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 426 (680)
..+++.-+...+.. ..-|.. -+. .-...|.+++++++++.+.++ ...|.-.+...+
T Consensus 423 EEDy~~LR~SId~y--dNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~Kk---------DklykDAietAa 491 (624)
T 3lvg_A 423 EEDYQALRTSIDAY--DNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKK---------DSLYKDAMQYAS 491 (624)
T ss_dssp TTCCHHHHHTTSSC--CCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCSST---------TCCTTGGGTTTT
T ss_pred hhhHHHHHHHHHHh--ccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHHHh---------cccHHHHHHHHH
Confidence 77776655544433 111211 122 223346677777777655431 112333445567
Q ss_pred ccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHH
Q 037256 427 HAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMI 473 (680)
Q Consensus 427 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 473 (680)
.+|+.+-+.++++-.++.| +.+.|.+.+-.+...=++|-++++-
T Consensus 492 ~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvVlEla 535 (624)
T 3lvg_A 492 ESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLETA 535 (624)
T ss_dssp TCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHHHHHH
Confidence 7888888888888877754 3445555555555566677776663
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.05 E-value=0.31 Score=48.40 Aligned_cols=73 Identities=7% Similarity=0.145 Sum_probs=45.3
Q ss_pred CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHH
Q 037256 377 ERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHY 453 (680)
Q Consensus 377 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 453 (680)
..+...|.++...+...|++++|...++++... .|+...|..+-..+.-.|++++|.+.+++.... .|...+|
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~ 346 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTL 346 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChH
Confidence 445566666655555567777777777777764 366556655556666677777777777666654 3444444
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.83 E-value=0.022 Score=58.92 Aligned_cols=93 Identities=5% Similarity=-0.092 Sum_probs=66.2
Q ss_pred ccCCHHHHHHHHHHhhhc---CCCc----ChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHHHHH
Q 037256 427 HAGLIDEGRKCFADMTKL---SVKP----EVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEIA 499 (680)
Q Consensus 427 ~~g~~~~a~~~~~~m~~~---~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~ 499 (680)
..|++++|..++++..+. -+.| ...+++.|..+|...|++++|+.++++. ...
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~a--------------------L~i 369 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKI--------------------IKP 369 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH--------------------HHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHH--------------------HHH
Confidence 457888888888876653 1222 2467888999999999999999999875 011
Q ss_pred HHHHHc-cCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 037256 500 ANYLFQ-LEPEHTGYFVLMSNIYAASNKWREVGKLREDMKN 539 (680)
Q Consensus 500 ~~~~~~-l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 539 (680)
.++.+. -.|+-...+..|+.+|..+|++++|+.++++..+
T Consensus 370 ~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 370 YSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 111111 1233345688899999999999999999999865
No 216
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.78 E-value=0.21 Score=49.62 Aligned_cols=66 Identities=18% Similarity=0.148 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHh
Q 037256 416 ITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM-PLPPNDS 483 (680)
Q Consensus 416 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~ 483 (680)
.+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+++. .+.|...
T Consensus 278 ~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 278 IIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 344444334444455555555555555443 44444444455555555555555555443 3344433
No 217
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=95.45 E-value=0.059 Score=55.69 Aligned_cols=85 Identities=8% Similarity=-0.045 Sum_probs=62.8
Q ss_pred hcCChHHHHHHHHHHHHc---CCCCC---H-HHHHHHHHHHHccCCHHHHHHHHHHhhhc-----C-CCcC-hHHHHHHH
Q 037256 392 MHGHGRKALEFFSQMLEE---GVKPD---H-ITFTSILSACSHAGLIDEGRKCFADMTKL-----S-VKPE-VKHYACMV 457 (680)
Q Consensus 392 ~~g~~~~A~~l~~~m~~~---g~~p~---~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-----~-~~p~-~~~~~~li 457 (680)
..|++++|+.++++.++. -+.|+ . .+++.|..+|...|++++|..++++..+. | -.|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357788888888877652 12333 2 37888888899999999999888887652 2 1233 45688899
Q ss_pred HHHHhcCCHHHHHHHHHhC
Q 037256 458 DMLGRAGCLYEAFDMIKQM 476 (680)
Q Consensus 458 ~~~~~~g~~~~A~~~~~~m 476 (680)
..|...|++++|+.++++.
T Consensus 390 ~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHH
Confidence 9999999999999999875
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.34 E-value=0.11 Score=53.84 Aligned_cols=90 Identities=12% Similarity=0.077 Sum_probs=57.9
Q ss_pred HHHHHHcCCHHHHHHHHhhcCCC-----CCC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHc-----C-CCCCH-HH
Q 037256 354 MDMYAKCGDLDTAENMFNDIHPS-----ERN----VSSWNVLIAGYGMHGHGRKALEFFSQMLEE-----G-VKPDH-IT 417 (680)
Q Consensus 354 i~~y~k~g~~~~A~~~f~~~~~~-----~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g-~~p~~-~t 417 (680)
+.-+.+.|++++|+..+++.... .++ ..+++.+...|...|++++|+.++++.++- | -.|+. .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 33455667777777777765322 222 346777777888888888888887776642 1 22333 35
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhhh
Q 037256 418 FTSILSACSHAGLIDEGRKCFADMTK 443 (680)
Q Consensus 418 ~~~ll~a~~~~g~~~~a~~~~~~m~~ 443 (680)
++.|...|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 67777777777777777777776554
No 219
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.23 E-value=1 Score=39.38 Aligned_cols=103 Identities=14% Similarity=0.134 Sum_probs=64.2
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHH
Q 037256 254 AMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRK 333 (680)
Q Consensus 254 ~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 333 (680)
+...++|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|.+... +..+.-.|...|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3445677888888777766 4567788888888888888888888776653 3344444555566555555
Q ss_pred HHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhc
Q 037256 334 FHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDI 373 (680)
Q Consensus 334 i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~ 373 (680)
+-+.....|- ++.-...+.-.|+++++.++|.+.
T Consensus 82 la~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 82 MQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 5444444431 233334455567777777777655
No 220
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.17 E-value=0.11 Score=40.54 Aligned_cols=55 Identities=15% Similarity=0.171 Sum_probs=32.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHHccCCHHHHHHHHHHhhhc
Q 037256 388 AGYGMHGHGRKALEFFSQMLEEGVKPD-HI-TFTSILSACSHAGLIDEGRKCFADMTKL 444 (680)
Q Consensus 388 ~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 444 (680)
..+...|++++|++.|++..+. .|+ .. .+..+..++...|++++|.+.|++..+.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3455566666666666666663 343 34 5555555666666666666666666654
No 221
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.13 E-value=0.28 Score=46.69 Aligned_cols=115 Identities=10% Similarity=0.079 Sum_probs=81.6
Q ss_pred cCCHHHHHHHHhhcCCCCCCHhHHHHHHHH-HHhc--CC------hHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHc
Q 037256 360 CGDLDTAENMFNDIHPSERNVSSWNVLIAG-YGMH--GH------GRKALEFFSQMLEEGVKPD---HITFTSILSACSH 427 (680)
Q Consensus 360 ~g~~~~A~~~f~~~~~~~~~~~~~~~li~~-~~~~--g~------~~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~~~ 427 (680)
.++..+-.+.+.+..+.......|..++.+ +... |. ..+|...+++.++ +.|+ ...|..+...|..
T Consensus 134 ~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~ 211 (301)
T 3u64_A 134 SGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAA 211 (301)
T ss_dssp SSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHh
Confidence 344455555666663334445678777653 3432 32 4577778888888 7787 3478888888888
Q ss_pred c-----CCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhc-CCHHHHHHHHHhC
Q 037256 428 A-----GLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRA-GCLYEAFDMIKQM 476 (680)
Q Consensus 428 ~-----g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m 476 (680)
. |+.++|.+.|++..+.+-.-+..++....+.|++. |+.++|.+.+++.
T Consensus 212 vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 212 APESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp SCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred CCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4 99999999999999864222477778888999884 9999999999886
No 222
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=94.61 E-value=0.07 Score=41.74 Aligned_cols=54 Identities=19% Similarity=0.187 Sum_probs=22.8
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCCCCHh-hHHHHHHHHhhhcchHHHHHHHHHHHH
Q 037256 286 GYIQNGQASEALLLFDEMQNSDCKPNPV-TALILVSACTYLGSRQLGRKFHGYIIN 340 (680)
Q Consensus 286 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~i~~~~~~ 340 (680)
.+.+.|++++|+..|++..+.. +.+.. .+..+..++...|++++|...++.+++
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444455555555555444331 11222 333334444444444444444444443
No 223
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.61 E-value=0.38 Score=42.10 Aligned_cols=103 Identities=14% Similarity=0.114 Sum_probs=60.0
Q ss_pred HHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 037256 356 MYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGR 435 (680)
Q Consensus 356 ~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 435 (680)
...++|+++.|.++-+.+ .+...|..|.......|+++-|.+.|.+... |..+.--|...|+.+.-.
T Consensus 14 LAL~lg~l~~A~e~a~~l----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL----NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 344567777777766655 3455677777777777777777777765543 334444455566665555
Q ss_pred HHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 037256 436 KCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMP 477 (680)
Q Consensus 436 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 477 (680)
.+-+.....| -++.-...+.-.|+++++.+++.+.+
T Consensus 81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 4444433333 12333344455677777777776664
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=93.95 E-value=0.46 Score=40.48 Aligned_cols=78 Identities=10% Similarity=-0.038 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHhhhcCCCc--ChHHHHHHHHHHHhcCCHHHHHH
Q 037256 397 RKALEFFSQMLEEGVKPDHITFTSILSACSHAG---LIDEGRKCFADMTKLSVKP--EVKHYACMVDMLGRAGCLYEAFD 471 (680)
Q Consensus 397 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~ 471 (680)
..+.+.|.+..+.|. ++..+...+..++.+++ ++++|..+|+...+.. .| +...+-.|.-+|.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 455556666666553 56666666777778877 6668888888888764 24 34455556677888888888888
Q ss_pred HHHhC
Q 037256 472 MIKQM 476 (680)
Q Consensus 472 ~~~~m 476 (680)
.++.+
T Consensus 93 y~~~l 97 (152)
T 1pc2_A 93 YVRGL 97 (152)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 225
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.90 E-value=10 Score=42.56 Aligned_cols=257 Identities=12% Similarity=0.079 Sum_probs=133.6
Q ss_pred HhccCChHHHHHHHHHHHHcc--CCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC-CC----------hhHHHHHHHHH
Q 037256 221 VGQLGDVLKAQAVHGYAICNA--FLEDLCIQNSIVAMYARCGNVEKARLVFDMMEK-RD----------LISWNSMLTGY 287 (680)
Q Consensus 221 ~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~-~~----------~~~~~~li~~~ 287 (680)
....|+.+++..++...+..+ -.+.......+.-+...+|.-+++..++..... .+ +..-.++.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 445677777766665443311 111223334444455566665566665554332 22 11122333344
Q ss_pred HHcCC-hhHHHHHHHHHHhCCCCCCHh--hHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHH--HcCC
Q 037256 288 IQNGQ-ASEALLLFDEMQNSDCKPNPV--TALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYA--KCGD 362 (680)
Q Consensus 288 ~~~g~-~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~--k~g~ 362 (680)
+-.|. -+++.+.+..+.... .+... .-.++...+...|+.+....++..+.+.. +..+...+.-+++ -.|+
T Consensus 464 a~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTC
T ss_pred HhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCC
Confidence 43443 246677777766532 11111 11122233445677777777777766532 3333333444443 5688
Q ss_pred HHHHHHHHhhcCCCCCCHhHHH---HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 037256 363 LDTAENMFNDIHPSERNVSSWN---VLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFA 439 (680)
Q Consensus 363 ~~~A~~~f~~~~~~~~~~~~~~---~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 439 (680)
.+.+..+.+.+........-|. ++..+|+..|+.....+++..+... ...+......+.-++...|+.+.+.++++
T Consensus 540 ~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 540 QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 8888887777633222233343 3345677788877666688888763 22222223333334555666666777776
Q ss_pred HhhhcCCCcChHHHHHHHHHHHhcCCH-HHHHHHHHhCCCCCCHh
Q 037256 440 DMTKLSVKPEVKHYACMVDMLGRAGCL-YEAFDMIKQMPLPPNDS 483 (680)
Q Consensus 440 ~m~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~p~~~ 483 (680)
.+.+.+ .|.+..-..+.-+....|.. .+|.+++..+...+|..
T Consensus 619 ~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~ 662 (963)
T 4ady_A 619 LLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDF 662 (963)
T ss_dssp TGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHH
T ss_pred HHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHH
Confidence 666543 56665555555555555554 56777777774344443
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=93.27 E-value=0.29 Score=41.70 Aligned_cols=81 Identities=12% Similarity=0.104 Sum_probs=37.3
Q ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHHHHcC---CHHHHHHHHhhcCCCC-C--CHhHHHHHHHHHHhcCChHHHHHHHH
Q 037256 331 GRKFHGYIINSNMKIDATLRNAVMDMYAKCG---DLDTAENMFNDIHPSE-R--NVSSWNVLIAGYGMHGHGRKALEFFS 404 (680)
Q Consensus 331 a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g---~~~~A~~~f~~~~~~~-~--~~~~~~~li~~~~~~g~~~~A~~l~~ 404 (680)
+++-+....+.+. ++..+...+.-++.+.+ +++++..+|+.+.... | +...+-.|.-+|.+.|++++|.+.++
T Consensus 17 ~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~ 95 (152)
T 1pc2_A 17 FEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR 95 (152)
T ss_dssp HHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 3333333333332 34444444444455544 3345555555442222 2 12333444445555666666666666
Q ss_pred HHHHcCCCCC
Q 037256 405 QMLEEGVKPD 414 (680)
Q Consensus 405 ~m~~~g~~p~ 414 (680)
.+.+ +.|+
T Consensus 96 ~lL~--ieP~ 103 (152)
T 1pc2_A 96 GLLQ--TEPQ 103 (152)
T ss_dssp HHHH--HCTT
T ss_pred HHHh--cCCC
Confidence 6655 4554
No 227
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=93.26 E-value=0.51 Score=36.55 Aligned_cols=65 Identities=12% Similarity=0.072 Sum_probs=37.3
Q ss_pred CchHHHHHHHHHHHHcCC---HHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 037256 345 IDATLRNAVMDMYAKCGD---LDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLEE 409 (680)
Q Consensus 345 ~~~~~~~~li~~y~k~g~---~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 409 (680)
.++..+..+..++...++ .++|..+|++.....| ++.++..+...+.+.|++++|+..|+++.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344455555555543333 4666666666544344 3555566666666677777777777776663
No 228
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.17 E-value=0.0043 Score=62.92 Aligned_cols=240 Identities=10% Similarity=0.063 Sum_probs=148.5
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhc
Q 037256 144 DSYVQAALVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQ 223 (680)
Q Consensus 144 ~~~~~~~Li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 223 (680)
.+.+|+.|..++.+.|++.+|.+-|-+ ..|+..|..+|....+.|.+++-+..+...++..-.|. .=+.++-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~--IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY--VETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTT--TTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccc--cHHHHHHHHHh
Confidence 455667777777777777766655433 34555667777777777777777776665555432332 23356666777
Q ss_pred cCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC------------------------CChhH
Q 037256 224 LGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEK------------------------RDLIS 279 (680)
Q Consensus 224 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~------------------------~~~~~ 279 (680)
.+++.+-+++.. .||..-.....+-+...|.++.|.-+|..+.. .++.+
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 666554333321 35555555666677777777777777766541 36678
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHH
Q 037256 280 WNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAK 359 (680)
Q Consensus 280 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k 359 (680)
|-.+-.+|...+.+.-|--.--.+. +.||. ...++..|...|.+++-..+++...... .....+++-|.-.|+|
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniI---vhade--L~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsK 275 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIV---VHADE--LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 275 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHH---CCSSC--CSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCchHHHHHHHhcchhc---ccHHH--HHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHh
Confidence 8888888888888776644332332 12221 2234455777788887777777665322 3577888888888887
Q ss_pred cCCHHHHHHHHhhcCC--CCC-------CHhHHHHHHHHHHhcCChHHHHH
Q 037256 360 CGDLDTAENMFNDIHP--SER-------NVSSWNVLIAGYGMHGHGRKALE 401 (680)
Q Consensus 360 ~g~~~~A~~~f~~~~~--~~~-------~~~~~~~li~~~~~~g~~~~A~~ 401 (680)
- +.++..+-++..-. .-| ....|.-++-.|.+...++.|..
T Consensus 276 Y-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 276 F-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp S-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred c-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 6 44555544443311 122 34568899999998888887753
No 229
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=92.03 E-value=0.69 Score=36.58 Aligned_cols=69 Identities=20% Similarity=0.120 Sum_probs=43.6
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHhhcCCC--------CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH
Q 037256 346 DATLRNAVMDMYAKCGDLDTAENMFNDIHPS--------ERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHI 416 (680)
Q Consensus 346 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 416 (680)
+..-+..|...+.+.|+++.|...|+..... ......+..+..+|.+.|++++|+..+++..+ +.|+..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~~ 80 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEHQ 80 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCCH
Confidence 3344455666667777777777776654211 12345667777777777777777777777776 566654
No 230
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=92.02 E-value=4.5 Score=33.35 Aligned_cols=85 Identities=15% Similarity=0.088 Sum_probs=54.5
Q ss_pred HcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 037256 359 KCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCF 438 (680)
Q Consensus 359 k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 438 (680)
+||++......+-.+ ..+....+.-+......|+-++-.+++..+.. ..+|+......+..||.+.|+..++.+++
T Consensus 73 ~C~NlKrVi~C~~~~---n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl 148 (172)
T 1wy6_A 73 KCQNLKSVVECGVIN---NTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLL 148 (172)
T ss_dssp GCSCTHHHHHHHHHT---TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhcHHHHHHHHHHh---cchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHH
Confidence 455555555555544 33334455556666777777777777777533 25667777777777777777777777777
Q ss_pred HHhhhcCCC
Q 037256 439 ADMTKLSVK 447 (680)
Q Consensus 439 ~~m~~~~~~ 447 (680)
.+.-+.|++
T Consensus 149 ~~AC~kG~k 157 (172)
T 1wy6_A 149 IEACKKGEK 157 (172)
T ss_dssp HHHHHTTCH
T ss_pred HHHHHhhhH
Confidence 777776643
No 231
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=91.69 E-value=0.59 Score=44.50 Aligned_cols=82 Identities=15% Similarity=0.054 Sum_probs=46.2
Q ss_pred HHHHHHHhhcCCCCCC---HhHHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHc-cCCHH
Q 037256 364 DTAENMFNDIHPSERN---VSSWNVLIAGYGM-----HGHGRKALEFFSQMLEEGVKPD--HITFTSILSACSH-AGLID 432 (680)
Q Consensus 364 ~~A~~~f~~~~~~~~~---~~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~a~~~-~g~~~ 432 (680)
..|...+++..+..|+ -..|..|...|.+ -|+.++|.+.|++.++ +.|+ ..++......++. .|+.+
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~--LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR--YCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH--HCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHHhcCCHH
Confidence 3444444444333444 3356666666665 3666677777776666 4553 3455555555555 36677
Q ss_pred HHHHHHHHhhhcCCC
Q 037256 433 EGRKCFADMTKLSVK 447 (680)
Q Consensus 433 ~a~~~~~~m~~~~~~ 447 (680)
++.+.+++.......
T Consensus 258 ~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 258 GFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHcCCCC
Confidence 777777766665433
No 232
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.65 E-value=11 Score=38.74 Aligned_cols=186 Identities=10% Similarity=0.092 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhcCC----CCCC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHHHHH
Q 037256 349 LRNAVMDMYAKCGDLDTAENMFNDIHP----SERN----VSSWNVLIAGYGMHGHGRKALEFFSQMLEEG-VKPDHITFT 419 (680)
Q Consensus 349 ~~~~li~~y~k~g~~~~A~~~f~~~~~----~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~ 419 (680)
.+...++.|...+++..|..+++++.. ..++ ...+..++..+...+++.+|.+.|.+..+.- ..-|...+.
T Consensus 179 ~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~ 258 (445)
T 4b4t_P 179 FILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWK 258 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHH
Confidence 444556667777777777776666511 1111 2345666666777788888877777765420 111222221
Q ss_pred HH----HHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhc--CCHHHHHHHHHhCCCCC---------CHhH
Q 037256 420 SI----LSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRA--GCLYEAFDMIKQMPLPP---------NDSV 484 (680)
Q Consensus 420 ~l----l~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~p---------~~~~ 484 (680)
.+ +....-.+....-..+.........-++...|..++.+|... .+++.+.+.|... +.+ ....
T Consensus 259 ~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~-L~~~~~~~~~~~~~~~ 337 (445)
T 4b4t_P 259 PVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPV-LNEDDLAFGGEANKHH 337 (445)
T ss_dssp HHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSS-TTTCCSSCCCSCSSHH
T ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHH-hcccchhhhcchhhHH
Confidence 11 111111111111222223322322246777888999998764 4577777777654 111 1345
Q ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 037256 485 WGALLLACRIHGEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKGL 542 (680)
Q Consensus 485 ~~~ll~a~~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 542 (680)
|..|......|....+.+. -+...+..++..+.- ..+++++....|...|.
T Consensus 338 ~~~L~~~v~ehnl~~i~k~-----Ys~I~l~~la~lL~l--~~~evE~~ls~mI~~g~ 388 (445)
T 4b4t_P 338 WEDLQKRVIEHNLRVISEY-----YSRITLLRLNELLDL--TESQTETYISDLVNQGI 388 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----EEEEEHHHHHHHHTS--CHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHH-----hceeeHHHHHHHhCc--CHHHHHHHHHHHHHCCC
Confidence 7888887777743333322 122334445444432 35788999999987664
No 233
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=91.30 E-value=5.4 Score=32.87 Aligned_cols=135 Identities=10% Similarity=0.006 Sum_probs=73.8
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHH
Q 037256 391 GMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAF 470 (680)
Q Consensus 391 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 470 (680)
.-.|..++..++..+...+. +..-++.++--....-+-+-..++++..-+. .| ...+|++....
T Consensus 18 ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FD----------is~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cC----------cHhhhcHHHHH
Confidence 34577777777777776632 3344555554444444444555555544332 11 12233333333
Q ss_pred HHHHhCCCCCCHhHHHHHHHHHHHH-----HHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 037256 471 DMIKQMPLPPNDSVWGALLLACRIH-----GEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREVGKLREDMKNKGLK 543 (680)
Q Consensus 471 ~~~~~m~~~p~~~~~~~ll~a~~~~-----~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 543 (680)
..+-.++. +......-|...... -++....++.-+|-+++...-++++|.+.|+..+|.+++++.-++|++
T Consensus 82 ~C~~~~n~--~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 82 ECGVINNT--LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHTTC--CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcc--hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 33333321 111122222222222 122233333345556889999999999999999999999999999984
No 234
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=90.50 E-value=1.5 Score=34.64 Aligned_cols=58 Identities=9% Similarity=-0.005 Sum_probs=32.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhhc--C----CCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256 419 TSILSACSHAGLIDEGRKCFADMTKL--S----VKPEVKHYACMVDMLGRAGCLYEAFDMIKQM 476 (680)
Q Consensus 419 ~~ll~a~~~~g~~~~a~~~~~~m~~~--~----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 476 (680)
..+...+...|+++.|...|+...+. . -.+....+..|..+|.+.|++++|...+++.
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~a 72 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKL 72 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 34445555556666666655555443 0 1234455666666677777777766666654
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=88.98 E-value=2.9 Score=34.14 Aligned_cols=85 Identities=11% Similarity=-0.005 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH---HHHHHHHhhhcCCCc--ChHHHHHHHHHHHhcCCHHHHH
Q 037256 396 GRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDE---GRKCFADMTKLSVKP--EVKHYACMVDMLGRAGCLYEAF 470 (680)
Q Consensus 396 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~---a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A~ 470 (680)
...+.+-|.+....|. |+..+-..+..++.++..... ++.+++.+.+.+ .| .....-.|.-++.|.|++++|.
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 3445555555555553 666666666777777776655 888888887764 23 3333445667788999999998
Q ss_pred HHHHhC-CCCCCH
Q 037256 471 DMIKQM-PLPPND 482 (680)
Q Consensus 471 ~~~~~m-~~~p~~ 482 (680)
+.++.+ ..+|+.
T Consensus 95 ~~~~~lL~~eP~n 107 (126)
T 1nzn_A 95 KYVRGLLQTEPQN 107 (126)
T ss_dssp HHHHHHHHHCTTC
T ss_pred HHHHHHHHhCCCC
Confidence 888775 444543
No 236
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=88.87 E-value=17 Score=35.00 Aligned_cols=133 Identities=11% Similarity=0.129 Sum_probs=81.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHhCCCccHHHHH----HHHHHHcCCCCCHhHHHHHHHHHh
Q 037256 147 VQAALVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEKPEEALIL----FQKTQQEGLLSDSVTIVSVASAVG 222 (680)
Q Consensus 147 ~~~~Li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~~~ 222 (680)
.|.++..-|.+.+++++|.+++.. -...+.+.|+...|-++ .+-..+.+++++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 345566667888888888887543 23445667777666654 344455678888888777777765
Q ss_pred ccCChH-HHHHHHHHHH----HccC--CCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHc
Q 037256 223 QLGDVL-KAQAVHGYAI----CNAF--LEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQN 290 (680)
Q Consensus 223 ~~~~~~-~a~~~~~~~~----~~g~--~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~ 290 (680)
....-+ .-..+...++ +.|- .-|+.....+...|.+.|++.+|+..|-.-...|...+..++.-+...
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~ 178 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQ 178 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHh
Confidence 532111 1123333333 3332 236778888888899999999988877633323455555555544443
No 237
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=88.66 E-value=22 Score=41.66 Aligned_cols=198 Identities=13% Similarity=0.105 Sum_probs=117.6
Q ss_pred HHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCC-CC-----------------
Q 037256 317 ILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPS-ER----------------- 378 (680)
Q Consensus 317 ~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~-~~----------------- 378 (680)
.++..+...+..+.+.++.... +.+....-.+..+|..+|++++|.+.|.+.... ..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 4555566667777666654432 344445456678899999999999999886221 00
Q ss_pred ------CHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--H--HHHHHHHHHHccCCHHHHHHHHHHhhhcCCCc
Q 037256 379 ------NVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH--I--TFTSILSACSHAGLIDEGRKCFADMTKLSVKP 448 (680)
Q Consensus 379 ------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p 448 (680)
-..-|..++..|.+.|.++.++++-+..++..-.-+. . .|..+..++...|++++|...+-.+.....
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~-- 969 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL-- 969 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--
Confidence 0122566777888888888888887777664322121 2 467778888888999988888877765432
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHhHHHHHHHHHHHHHHHHHHHHHccCCCC-CchHHHHHHHHHhcCCh
Q 037256 449 EVKHYACMVDMLGRAGCLYEAFDMIKQMPLPPNDSVWGALLLACRIHGEIAANYLFQLEPEH-TGYFVLMSNIYAASNKW 527 (680)
Q Consensus 449 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~a~~~~~~~~~~~~~~l~p~~-~~~~~~l~~~~~~~g~~ 527 (680)
-......||..++..|..++-.. +|..........+|..-++. . .+|.+ +.+|..|-.-+...|++
T Consensus 970 r~~cLr~LV~~lce~~~~~~L~~----lpf~gl~~~Vd~IL~~kAr~-------~--~~~~~~p~Yy~iLYs~ri~r~dy 1036 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKINQLLN----YSMPTLRQDVDNLLERKAFQ-------M--INVESQPCWYNILFSWRYKHQNY 1036 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHHH----HTTTSCHHHHHHHHHHHHHH-------H--HHHCCSTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCChhhhhC----CCCccHHHHHHHHHHHHHHh-------C--CccccCCCHHHHhHhhhhccCCh
Confidence 34556677777777776654332 33222211222222111110 0 12222 34566666666777777
Q ss_pred hHHHHHH
Q 037256 528 REVGKLR 534 (680)
Q Consensus 528 ~~A~~~~ 534 (680)
..|..++
T Consensus 1037 R~AA~vm 1043 (1139)
T 4fhn_B 1037 RDAAAII 1043 (1139)
T ss_dssp SCHHHHH
T ss_pred HHHHHHH
Confidence 7666544
No 238
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=87.88 E-value=7.3 Score=29.98 Aligned_cols=86 Identities=14% Similarity=0.096 Sum_probs=60.6
Q ss_pred ChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 037256 226 DVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQN 305 (680)
Q Consensus 226 ~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 305 (680)
..++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||.++|-+|-.. +.|..+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 45556666555555443 223323334567789999999999999999999999887654 77888888888888887
Q ss_pred CCCCCCHhhHH
Q 037256 306 SDCKPNPVTAL 316 (680)
Q Consensus 306 ~g~~p~~~t~~ 316 (680)
+| .|....|.
T Consensus 98 sg-~p~~q~Fa 107 (116)
T 2p58_C 98 SQ-DPRIQTFV 107 (116)
T ss_dssp CC-CHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 77 56555553
No 239
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=87.80 E-value=4.7 Score=32.93 Aligned_cols=85 Identities=12% Similarity=0.046 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHH---HHHHHhhcCCCC-C--CHhHHHHHHHHHHhcCChHHHHH
Q 037256 328 RQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDT---AENMFNDIHPSE-R--NVSSWNVLIAGYGMHGHGRKALE 401 (680)
Q Consensus 328 ~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~---A~~~f~~~~~~~-~--~~~~~~~li~~~~~~g~~~~A~~ 401 (680)
+..+++-+......|. ++..+--.+.-++.+.....+ +..+++.+.... | .-...-.|.-++.+.|++++|.+
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3334444444433332 444444445555555554444 555565553332 2 11223334455666666666666
Q ss_pred HHHHHHHcCCCCCH
Q 037256 402 FFSQMLEEGVKPDH 415 (680)
Q Consensus 402 l~~~m~~~g~~p~~ 415 (680)
.++.+.+ +.|+.
T Consensus 96 ~~~~lL~--~eP~n 107 (126)
T 1nzn_A 96 YVRGLLQ--TEPQN 107 (126)
T ss_dssp HHHHHHH--HCTTC
T ss_pred HHHHHHH--hCCCC
Confidence 6666666 45543
No 240
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=86.78 E-value=6.9 Score=30.08 Aligned_cols=86 Identities=12% Similarity=-0.000 Sum_probs=61.0
Q ss_pred ChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 037256 226 DVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQN 305 (680)
Q Consensus 226 ~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 305 (680)
..++|..|-+.+...+. ...+--.-+..+...|++++|..+.+...-||.++|-+|-. .+.|..+++..-+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45556666555555443 22332333456778999999999999999999999988765 478888888888888887
Q ss_pred CCCCCCHhhHH
Q 037256 306 SDCKPNPVTAL 316 (680)
Q Consensus 306 ~g~~p~~~t~~ 316 (680)
+| .|....|.
T Consensus 97 sg-~p~~q~Fa 106 (115)
T 2uwj_G 97 SS-DPALADFA 106 (115)
T ss_dssp CS-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 77 66555553
No 241
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.10 E-value=33 Score=35.17 Aligned_cols=94 Identities=11% Similarity=0.048 Sum_probs=66.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCCH---HHHHHHHHHHHccCCHHHHHHHHHHhhhc----CCCcC--hH
Q 037256 383 WNVLIAGYGMHGHGRKALEFFSQMLEE--GVKPDH---ITFTSILSACSHAGLIDEGRKCFADMTKL----SVKPE--VK 451 (680)
Q Consensus 383 ~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~----~~~p~--~~ 451 (680)
...|...|...|++.+|.+++.++... |..+.. ..+..-+..|...+++..|..++.++... ...|+ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 455677788889999999999888753 222221 24566677888899999999988887532 22222 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256 452 HYACMVDMLGRAGCLYEAFDMIKQM 476 (680)
Q Consensus 452 ~~~~li~~~~~~g~~~~A~~~~~~m 476 (680)
.|.+++..+...+++.+|.+.|.+.
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 5778888888899999988777665
No 242
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=85.53 E-value=9.3 Score=32.22 Aligned_cols=37 Identities=14% Similarity=0.260 Sum_probs=27.2
Q ss_pred CCChhHHHHHHHHHHHcCCh------hHHHHHHHHHHhCCCCCC
Q 037256 274 KRDLISWNSMLTGYIQNGQA------SEALLLFDEMQNSDCKPN 311 (680)
Q Consensus 274 ~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~p~ 311 (680)
..|..+|-..+...-+.|+. ++..++|++.... ++|+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~ 52 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPD 52 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGG
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCcc
Confidence 35777888888877777888 7777888877753 5665
No 243
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=85.28 E-value=29 Score=33.77 Aligned_cols=133 Identities=11% Similarity=0.045 Sum_probs=78.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCChhHHHHHHHHHHhCCCccHHHHHH----HHHHHcCCCCCHhHHHHHHHHHhc
Q 037256 148 QAALVDMYAKCGQTDDGCKVFDEMSVRDLVSWTVMITAYEQAEKPEEALILF----QKTQQEGLLSDSVTIVSVASAVGQ 223 (680)
Q Consensus 148 ~~~Li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~~~~~ 223 (680)
+.++..-|.+.+++++|.+++-. -...+.+.|+...|-++- +-+.+.++++|..+...++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 44555667888888888887533 234456677776665554 444567888888887777777765
Q ss_pred cCChH-HHHHHHHHHH----Hcc--CCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcC
Q 037256 224 LGDVL-KAQAVHGYAI----CNA--FLEDLCIQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNG 291 (680)
Q Consensus 224 ~~~~~-~a~~~~~~~~----~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g 291 (680)
...-+ .=..+...++ +.| ..-|+.....+...|.+.+++.+|+.-|-.-.++.+..+..|+.-+...+
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTS
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence 54321 1122333333 333 23456677777788888888888887774322222345544444443333
No 244
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=85.19 E-value=7.5 Score=33.37 Aligned_cols=114 Identities=8% Similarity=-0.010 Sum_probs=60.4
Q ss_pred HHHHHHHcCCHHHHHHHHhhcCC---CCCCH-------hHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHH-HHHH
Q 037256 353 VMDMYAKCGDLDTAENMFNDIHP---SERNV-------SSWNVLIAGYGMHGHGRKALEFFSQMLEEG-VKPDHI-TFTS 420 (680)
Q Consensus 353 li~~y~k~g~~~~A~~~f~~~~~---~~~~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~-t~~~ 420 (680)
-+..+...|.++.|+-+.+.+.. ..+++ .+...+..++...|++.+|...|++.++.. .-|... +..+
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~ 105 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPS 105 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 35566667777777776665421 13332 134455666777777777777777765421 112111 1111
Q ss_pred HHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 037256 421 ILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQMPLP 479 (680)
Q Consensus 421 ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 479 (680)
+- .. ..... .....++.+.--.+..+|.+.|+.++|+.+++.+|.+
T Consensus 106 ~~---~~-ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 106 TG---NS-ASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp ------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred cc---cc-CCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 10 00 00000 0012334455555778899999999999999998654
No 245
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=85.06 E-value=7.2 Score=42.86 Aligned_cols=51 Identities=12% Similarity=0.102 Sum_probs=32.5
Q ss_pred CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 037256 377 ERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAG 429 (680)
Q Consensus 377 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 429 (680)
+.+..-|..|.....+.+++++|.+.|+.... .+-+...+..||..|...+
T Consensus 610 kks~lEWEiLGlla~RL~h~~EA~~a~~~~l~--~RFs~ka~~kLLeiY~~~~ 660 (754)
T 4gns_B 610 KHSGLEWELLGLIMLRTWHWEDAVACLRTSIV--ARFDPVSCQQLLKIYLQPP 660 (754)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHS--SSCCHHHHHHHHHHHHSCC
T ss_pred ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hccCHHHHHHHHHHHHhcC
Confidence 44555677776666666777777777766665 3456666666666665543
No 246
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=84.95 E-value=16 Score=30.47 Aligned_cols=45 Identities=2% Similarity=0.027 Sum_probs=35.7
Q ss_pred HHHHHHHHHccCCC-CCchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 037256 496 GEIAANYLFQLEPE-HTGYFVLMSNIYAASNKWREVGKLREDMKNK 540 (680)
Q Consensus 496 ~~~~~~~~~~l~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 540 (680)
|...++.++.-.|. .....+.|+-.+.+.|++++|.++.+.+.+.
T Consensus 61 GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 61 GVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp HHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 55566666666663 4567788999999999999999999999873
No 247
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=84.90 E-value=4 Score=44.85 Aligned_cols=50 Identities=12% Similarity=0.033 Sum_probs=34.0
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHh
Q 037256 390 YGMHGHGRKALEFFSQMLEEGVKPDH-ITFTSILSACSHAGLIDEGRKCFADM 441 (680)
Q Consensus 390 ~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m 441 (680)
+...|+++-|+++-++... ..|+. .||..|..+|...|+++.|+-.++.+
T Consensus 347 Ll~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 4456777777777777766 45654 37777777777777777777776665
No 248
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=84.84 E-value=30 Score=33.63 Aligned_cols=167 Identities=12% Similarity=0.130 Sum_probs=101.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHH----HHHHhCCCCCCHhhHHHHHHHHhh
Q 037256 249 QNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLF----DEMQNSDCKPNPVTALILVSACTY 324 (680)
Q Consensus 249 ~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~a~~~ 324 (680)
+.++..=|.+.+++++|.+++-. -...+.+.|+...|-++- +-..+.++++|..+...++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 34566678899999999987643 233456677766655544 445567888888888888877766
Q ss_pred hcchHH-HHHHHHHH----HHcC--CCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChH
Q 037256 325 LGSRQL-GRKFHGYI----INSN--MKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGR 397 (680)
Q Consensus 325 ~g~~~~-a~~i~~~~----~~~~--~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~ 397 (680)
...-+- -..+.+.+ .+.| ..-|+.....+...|.+.+++.+|+.-|-.- ..+.+..+..|+.-+...+...
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg--~~~s~~~~a~mL~ew~~~~~~~ 184 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLG--TKESPEVLARMEYEWYKQDESH 184 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTS--CTTHHHHHHHHHHHHHHTSCGG
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhc--CCchHHHHHHHHHHHHHhcCCc
Confidence 553221 12233333 3333 3457788888999999999999999998422 3333455644444433333211
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhh
Q 037256 398 KALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTK 443 (680)
Q Consensus 398 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 443 (680)
.+|...-..++ -|.-.+++..|..+++...+
T Consensus 185 --------------e~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 185 --------------TAPLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp --------------GHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred --------------cHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 11222222233 35556788888887666553
No 249
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=84.57 E-value=21 Score=41.83 Aligned_cols=167 Identities=8% Similarity=-0.001 Sum_probs=95.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcch
Q 037256 249 QNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSR 328 (680)
Q Consensus 249 ~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 328 (680)
...++..+.+.+..+.|.++..-.+. ++.+--.+..+|...|++++|.+.|++.-. |+..+...... .
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~----------~ 882 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAV----------L 882 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSS----------H
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhh----------h
Confidence 34566667778888888776655544 555545667788999999999999987532 22221110000 0
Q ss_pred HHHHHHHHHHHHc-C-CCCchHHHHHHHHHHHHcCCHHHHHHHHhhcC----CCCCC--HhHHHHHHHHHHhcCChHHHH
Q 037256 329 QLGRKFHGYIINS-N-MKIDATLRNAVMDMYAKCGDLDTAENMFNDIH----PSERN--VSSWNVLIAGYGMHGHGRKAL 400 (680)
Q Consensus 329 ~~a~~i~~~~~~~-~-~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~----~~~~~--~~~~~~li~~~~~~g~~~~A~ 400 (680)
.. ...+... . ...-..-|.-++..+.+.+.++.+.+.-.... +..++ ...|..+..++...|++++|.
T Consensus 883 ~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay 958 (1139)
T 4fhn_B 883 RE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAH 958 (1139)
T ss_dssp HH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGG
T ss_pred cc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHH
Confidence 00 0001110 0 11123345566667777777776665544321 11122 125788888888889998888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 037256 401 EFFSQMLEEGVKPDHITFTSILSACSHAGLIDE 433 (680)
Q Consensus 401 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 433 (680)
..+-.+.....+ ...+..|+...+..|..+.
T Consensus 959 ~aL~~~pd~~~r--~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 959 VALMVLSTTPLK--KSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHHSSSC--HHHHHHHHHHHHHHCCHHH
T ss_pred HHHHhCCCHHHH--HHHHHHHHHHHHhCCChhh
Confidence 888777664333 3455556666665555443
No 250
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=84.41 E-value=5.3 Score=33.68 Aligned_cols=98 Identities=16% Similarity=0.190 Sum_probs=66.5
Q ss_pred CCCHhHHHHHHHHHHhcCCh------HHHHHHHHHHHHcCCCCCHH----HHHHHHH---HHHccCCHHHHHHHHHHhhh
Q 037256 377 ERNVSSWNVLIAGYGMHGHG------RKALEFFSQMLEEGVKPDHI----TFTSILS---ACSHAGLIDEGRKCFADMTK 443 (680)
Q Consensus 377 ~~~~~~~~~li~~~~~~g~~------~~A~~l~~~m~~~g~~p~~~----t~~~ll~---a~~~~g~~~~a~~~~~~m~~ 443 (680)
..|..+|-..+.-.-+.|+. ++..++|++.... ++|+.. .|.-+.- .+...+++++|.++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45677777777777777887 7778888887775 666542 1211111 12334788889999998876
Q ss_pred cCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256 444 LSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM 476 (680)
Q Consensus 444 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 476 (680)
.+-.- ...|-.....-.|.|+++.|.+++.+.
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~A 120 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKA 120 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 52222 667777777777899999998888764
No 251
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=82.09 E-value=15 Score=28.27 Aligned_cols=86 Identities=13% Similarity=0.160 Sum_probs=52.9
Q ss_pred chHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 037256 327 SRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQM 406 (680)
Q Consensus 327 ~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 406 (680)
..++|..|-+.+...+. ...+--.-+..+...|++++|..+.+.. ..||...|-+|-.. +.|..+++..-+.++
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~--c~pdlepw~ALce~--rlGl~s~le~rL~~l 95 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL--AYPDLEPWLALCEY--RLGLGSALESRLNRL 95 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS--CCGGGHHHHHHHHH--HHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC--CCchHHHHHHHHHH--hcccHHHHHHHHHHH
Confidence 34556556555555442 2233223344566788888888888887 68888888777654 567777776666666
Q ss_pred HHcCCCCCHHHHH
Q 037256 407 LEEGVKPDHITFT 419 (680)
Q Consensus 407 ~~~g~~p~~~t~~ 419 (680)
..+| .|....|.
T Consensus 96 a~sg-~p~~q~Fa 107 (116)
T 2p58_C 96 ARSQ-DPRIQTFV 107 (116)
T ss_dssp TTCC-CHHHHHHH
T ss_pred HhCC-CHHHHHHH
Confidence 6654 44444443
No 252
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=81.43 E-value=40 Score=32.50 Aligned_cols=166 Identities=13% Similarity=0.065 Sum_probs=100.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHH----HHHHHhCCCCCCHhhHHHHHHHHhh
Q 037256 249 QNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLL----FDEMQNSDCKPNPVTALILVSACTY 324 (680)
Q Consensus 249 ~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~a~~~ 324 (680)
+.++..=|.+.+++++|.+++.. -...+.+.|+...|-++ ++-..+.+++++..+...++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 35567778889999999988643 23345667777666554 4555567888898888888877765
Q ss_pred hcch-----HHHHHHHHHHHHcC--CCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhc---C
Q 037256 325 LGSR-----QLGRKFHGYIINSN--MKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMH---G 394 (680)
Q Consensus 325 ~g~~-----~~a~~i~~~~~~~~--~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~---g 394 (680)
...- .-.......-.+.| ..-++.....+...|.+.|++.+|+.-|-.- ...+...+..|+.-+... |
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~--~~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLG--THDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTS--CHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhC--CCccHHHHHHHHHHHHHhcCCC
Confidence 3321 22222233333333 2347888899999999999999999988633 222344554444433333 3
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhh
Q 037256 395 HGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMT 442 (680)
Q Consensus 395 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 442 (680)
...++-- ..-..++ -|.-.|++..|..+|+...
T Consensus 183 ~~~e~dl--------------f~~RaVL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 183 EDSTVAE--------------FFSRLVF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp CHHHHHH--------------HHHHHHH-HHHHTTBHHHHHHHHHHHH
T ss_pred CcchHHH--------------HHHHHHH-HHHHhcCHHHHHHHHHHHH
Confidence 3332211 1111222 3456688888888887654
No 253
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=81.14 E-value=14 Score=28.35 Aligned_cols=86 Identities=13% Similarity=0.101 Sum_probs=55.3
Q ss_pred chHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 037256 327 SRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQM 406 (680)
Q Consensus 327 ~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 406 (680)
..++|..|-+.+...+. ...+--.-+..+...|++++|..+.+.. ..||...|-+|-.. +.|..+++..-+.++
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~--c~pdlepw~ALce~--rlGl~s~le~rL~~l 94 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN--PWPALEPWFALCEW--HLGLGAALDRRLAGL 94 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC--CCGGGHHHHHHHHH--HTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC--CCchHHHHHHHHHH--hcccHHHHHHHHHHH
Confidence 34556666666555443 3333333344566788888888888887 68888888777653 677777777777677
Q ss_pred HHcCCCCCHHHHH
Q 037256 407 LEEGVKPDHITFT 419 (680)
Q Consensus 407 ~~~g~~p~~~t~~ 419 (680)
..+| .|....|.
T Consensus 95 a~sg-~p~~q~Fa 106 (115)
T 2uwj_G 95 GGSS-DPALADFA 106 (115)
T ss_dssp HTCS-SHHHHHHH
T ss_pred HhCC-CHHHHHHH
Confidence 7665 45444443
No 254
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=80.67 E-value=7 Score=39.40 Aligned_cols=68 Identities=7% Similarity=0.039 Sum_probs=44.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhh----c-CCCcChHH
Q 037256 384 NVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTK----L-SVKPEVKH 452 (680)
Q Consensus 384 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~-~~~p~~~~ 452 (680)
..++..+...|++.+|+..+..+... -+-+...+..++.++...|+..+|++.|+...+ . |+.|...+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 33455666777777777777777663 223555777777777777777777777776543 1 77776654
No 255
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=80.11 E-value=62 Score=34.88 Aligned_cols=45 Identities=24% Similarity=0.350 Sum_probs=27.6
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhcc
Q 037256 77 LWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASN 123 (680)
Q Consensus 77 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 123 (680)
.| .+|-.+.|.|.+++|.++.++.... +.--...|...+..++..
T Consensus 155 ~W-a~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~~s 199 (661)
T 2qx5_A 155 IW-ALIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYASS 199 (661)
T ss_dssp HH-HHHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC---
T ss_pred cH-HHHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHHhC
Confidence 45 5677888999999999988766432 111124677777777643
No 256
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=79.34 E-value=4.4 Score=40.96 Aligned_cols=68 Identities=16% Similarity=0.294 Sum_probs=56.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhcCCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCHHH
Q 037256 350 RNAVMDMYAKCGDLDTAENMFNDIHPSER-NVSSWNVLIAGYGMHGHGRKALEFFSQMLE-----EGVKPDHIT 417 (680)
Q Consensus 350 ~~~li~~y~k~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t 417 (680)
...++..+...|+.++|...+..+....| +...|..+|.+|...|+..+|++.|++..+ .|+.|...+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 34567888899999999988888744444 677999999999999999999999998764 489998765
No 257
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=78.08 E-value=27 Score=28.64 Aligned_cols=79 Identities=13% Similarity=-0.045 Sum_probs=51.4
Q ss_pred CCCCHHHHHHHHHHHHccCC---HHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHhHHH
Q 037256 411 VKPDHITFTSILSACSHAGL---IDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM-PLPPNDSVWG 486 (680)
Q Consensus 411 ~~p~~~t~~~ll~a~~~~g~---~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~ 486 (680)
-.|+..|--.+..++.++.. ..+|+.+++.+.+.+..-.....--|.-++.|.|++++|.+..+.+ ...|+...-.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 115 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 34555554455556666554 4578888888887652223455556777888999999998888876 6666655444
Q ss_pred HHH
Q 037256 487 ALL 489 (680)
Q Consensus 487 ~ll 489 (680)
+|-
T Consensus 116 ~Lk 118 (134)
T 3o48_A 116 ALK 118 (134)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 258
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=77.18 E-value=82 Score=33.72 Aligned_cols=114 Identities=13% Similarity=0.055 Sum_probs=65.0
Q ss_pred ChhHHHHHHHHHHhCCCCCCHhhHHHHHH----HHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHH
Q 037256 292 QASEALLLFDEMQNSDCKPNPVTALILVS----ACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAE 367 (680)
Q Consensus 292 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~----a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~ 367 (680)
+.+.|...|....+.. ..+......+-. .....+....+...+....... .+.....-.+..-.+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHH
Confidence 6788888888876543 233333222222 2333442444555555444332 33333444455556779999999
Q ss_pred HHHhhcCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 037256 368 NMFNDIHPSERN-VSSWNVLIAGYGMHGHGRKALEFFSQMLE 408 (680)
Q Consensus 368 ~~f~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 408 (680)
..|+.|....++ ....-=+..++...|+.++|..+|.++.+
T Consensus 306 ~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999988443222 21111233456678999999999988864
No 259
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=75.24 E-value=12 Score=29.07 Aligned_cols=62 Identities=8% Similarity=0.152 Sum_probs=46.3
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhc-CCCcChHHHHHHHH
Q 037256 395 HGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKL-SVKPEVKHYACMVD 458 (680)
Q Consensus 395 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~ 458 (680)
+.-+..+-++.+....+-|+.....+.|.||-+.+++..|.++|+..+.+ |-. ..+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHHH
Confidence 34466666677777778888888888999999999999999999888776 422 445666653
No 260
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=73.27 E-value=28 Score=32.54 Aligned_cols=111 Identities=14% Similarity=0.130 Sum_probs=68.1
Q ss_pred HHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHhH----HHHHHHHHHHHHHH
Q 037256 424 ACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM-PLPPNDSV----WGALLLACRIHGEI 498 (680)
Q Consensus 424 a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~----~~~ll~a~~~~~~~ 498 (680)
...+.|.++++++....-++.. +-|...-..++..|+-.|+++.|.+-++.. .+.|+... |..+|. ++.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~-----aE~ 79 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVK-----AAQ 79 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH-----HHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHH-----HHH
Confidence 4556778888888777777654 566777777888888888888887777655 34454332 222222 334
Q ss_pred HHHHHHc--cCC---CCCc-hHHHHHHH--HHhcCChhHHHHHHHHHHhC
Q 037256 499 AANYLFQ--LEP---EHTG-YFVLMSNI--YAASNKWREVGKLREDMKNK 540 (680)
Q Consensus 499 ~~~~~~~--l~p---~~~~-~~~~l~~~--~~~~g~~~~A~~~~~~m~~~ 540 (680)
.=+.++. ..| ..+. -...|..+ ....|+.++|.+++....+.
T Consensus 80 ~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 80 ARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp HHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 4344443 112 2222 22333333 45679999999999998654
No 261
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=72.46 E-value=15 Score=28.48 Aligned_cols=60 Identities=8% Similarity=0.032 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 037256 93 ETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVD 153 (680)
Q Consensus 93 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 153 (680)
+..+-++.+....+.|++....+.|++|.+.+++..|.++++-+...- .....+|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 455566666667778888888888888888888888888887765432 333455666554
No 262
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=65.12 E-value=49 Score=28.32 Aligned_cols=119 Identities=9% Similarity=0.069 Sum_probs=66.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC-----CCh-------hHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCC-HhhHH
Q 037256 251 SIVAMYARCGNVEKARLVFDMMEK-----RDL-------ISWNSMLTGYIQNGQASEALLLFDEMQNSD-CKPN-PVTAL 316 (680)
Q Consensus 251 ~Li~~y~~~g~~~~A~~~f~~m~~-----~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~-~~t~~ 316 (680)
.-+......|.++.|+-+.+.+.. +++ .+...+..++...+++.+|...|++..+.. .-+. ..+.+
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~ 104 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP 104 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 345667788888888877766431 332 245556778888888999998888864321 1111 11111
Q ss_pred HHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhH
Q 037256 317 ILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSS 382 (680)
Q Consensus 317 ~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~ 382 (680)
++-..-...+ ......+..+---+..+|.+.++.++|..+++.+....+++..
T Consensus 105 ~~~~~ss~p~-------------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kv 157 (167)
T 3ffl_A 105 STGNSASTPQ-------------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKI 157 (167)
T ss_dssp -------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHH
T ss_pred cccccCCCcc-------------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHH
Confidence 1100000000 0112334455555778888889999999998888444555544
No 263
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=64.99 E-value=43 Score=31.10 Aligned_cols=17 Identities=6% Similarity=0.104 Sum_probs=8.7
Q ss_pred HHHHHcCCHHHHHHHHh
Q 037256 355 DMYAKCGDLDTAENMFN 371 (680)
Q Consensus 355 ~~y~k~g~~~~A~~~f~ 371 (680)
...++.|..+-+..+++
T Consensus 224 ~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 224 ILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHh
Confidence 33444555555555554
No 264
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=64.83 E-value=1.9e+02 Score=32.66 Aligned_cols=14 Identities=21% Similarity=0.434 Sum_probs=8.7
Q ss_pred CChHHHHHHhhhcc
Q 037256 56 GEPNTARSLFNSIH 69 (680)
Q Consensus 56 g~~~~A~~~f~~~~ 69 (680)
++.+.+.++|+...
T Consensus 244 nD~~li~~if~~l~ 257 (963)
T 4ady_A 244 NDAGLALQLFKKLK 257 (963)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 66666666666654
No 265
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=63.55 E-value=64 Score=26.83 Aligned_cols=70 Identities=10% Similarity=-0.086 Sum_probs=43.3
Q ss_pred CCCHHHHHHHHHHHHccCC---HHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 037256 412 KPDHITFTSILSACSHAGL---IDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM-PLPPN 481 (680)
Q Consensus 412 ~p~~~t~~~ll~a~~~~g~---~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 481 (680)
.|+..|--.+..++.++.. ..+++.+++.+.+.+..-.....-.|.-++.|.|++++|.++.+.+ ..+|+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 4555554455556666554 4567888888777542223334445666788888888888877765 34444
No 266
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=63.49 E-value=25 Score=28.86 Aligned_cols=62 Identities=10% Similarity=0.197 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHH
Q 037256 396 GRKALEFFSQMLEEGVKPDHITFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVD 458 (680)
Q Consensus 396 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 458 (680)
.-+..+-++.+....+-|+.......|.+|-+.+++..|.++|+-.+.+- .+....|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 34556666666677788999999999999999999999999999888762 233556766653
No 267
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=60.25 E-value=21 Score=29.30 Aligned_cols=53 Identities=19% Similarity=0.147 Sum_probs=28.0
Q ss_pred chHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCC
Q 037256 327 SRQLGRKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERN 379 (680)
Q Consensus 327 ~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~ 379 (680)
+...|..++..+.+.+........--|.-++.|.|++++|.+..+.+...+|+
T Consensus 58 d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 58 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 45566666666665542222333334445566666666666666665444443
No 268
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=57.84 E-value=99 Score=27.19 Aligned_cols=91 Identities=16% Similarity=0.175 Sum_probs=39.6
Q ss_pred CchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037256 345 IDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHITFTSILSA 424 (680)
Q Consensus 345 ~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 424 (680)
++..+-...+.++.+.|..+....+.+.+ ..++...-...+.++...|.. ++...+.++.. .||...-...+.+
T Consensus 93 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l--~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~a 166 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDERAVEPLIKAL--KDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADA 166 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHT--TCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHH--hCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHHH
Confidence 44455555555555555543333333333 344444444444444444443 23333333332 3444444444445
Q ss_pred HHccCCHHHHHHHHHHhh
Q 037256 425 CSHAGLIDEGRKCFADMT 442 (680)
Q Consensus 425 ~~~~g~~~~a~~~~~~m~ 442 (680)
..+.+. .++...+..+.
T Consensus 167 L~~~~~-~~~~~~L~~~l 183 (211)
T 3ltm_A 167 LGEIGG-ERVRAAMEKLA 183 (211)
T ss_dssp HHHHCS-HHHHHHHHHHH
T ss_pred HHHhCc-hhHHHHHHHHH
Confidence 544444 23334444443
No 269
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=55.42 E-value=84 Score=28.19 Aligned_cols=84 Identities=11% Similarity=0.048 Sum_probs=40.1
Q ss_pred HHHhCCCchHHHHHHHHHHhCCCCCCccc--HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchh--HHHHHHHHHHhcC
Q 037256 84 AYANNGHCVETLELYSTMRRSGISSNSYT--FPFVLKACASNSLILEGKVVHGDIIRTGFLSDSY--VQAALVDMYAKCG 159 (680)
Q Consensus 84 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~Li~~~~~~g 159 (680)
..++.|+.+....+++.+.+.|..++... -.+.+...+..|+.+ +.+.+++.|..++.. ...+.+...+..|
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 90 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS----VVRLLVTAGASPMALDRHGQTAAHLACEHR 90 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCCHHHHHHHcC
Confidence 34556777666666666655554443321 112333344455553 334444555544321 1122333344556
Q ss_pred ChHHHHHHHhcC
Q 037256 160 QTDDGCKVFDEM 171 (680)
Q Consensus 160 ~~~~A~~~f~~~ 171 (680)
+.+-+..+++..
T Consensus 91 ~~~~~~~Ll~~~ 102 (241)
T 1k1a_A 91 SPTCLRALLDSA 102 (241)
T ss_dssp CHHHHHHHHHHS
T ss_pred CHHHHHHHHHcC
Confidence 666665555544
No 270
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=55.31 E-value=70 Score=32.46 Aligned_cols=94 Identities=10% Similarity=-0.014 Sum_probs=44.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHhhhc-CCCcChHHHH----H
Q 037256 383 WNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDH--ITFTSILSACSHAGLIDEGRKCFADMTKL-SVKPEVKHYA----C 455 (680)
Q Consensus 383 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~----~ 455 (680)
+..+..-|.+.|+.++|.+.|.++...-..+.. ..+..++..+...+++..+....++.... .-.++...-+ +
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~ 213 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTY 213 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHH
Confidence 344455555555555555555555543222222 24455555566666666666666655433 1112211111 1
Q ss_pred HHHHHHhcCCHHHHHHHHHhC
Q 037256 456 MVDMLGRAGCLYEAFDMIKQM 476 (680)
Q Consensus 456 li~~~~~~g~~~~A~~~~~~m 476 (680)
-...+...+++.+|.+.|-+.
T Consensus 214 ~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 214 YGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHhChHHHHHHHHHHH
Confidence 122233456666666555443
No 271
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=55.11 E-value=86 Score=31.57 Aligned_cols=15 Identities=13% Similarity=0.042 Sum_probs=7.2
Q ss_pred HHhcCCHHHHHHHHH
Q 037256 460 LGRAGCLYEAFDMIK 474 (680)
Q Consensus 460 ~~~~g~~~~A~~~~~ 474 (680)
..+.|+.+-+.-+++
T Consensus 351 A~~~g~~~iv~~Ll~ 365 (437)
T 1n11_A 351 AAQQGHTDIVTLLLK 365 (437)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHCChHHHHHHHHH
Confidence 345566554444443
No 272
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=54.94 E-value=88 Score=25.72 Aligned_cols=63 Identities=14% Similarity=0.143 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHhHHHHHHHHH
Q 037256 430 LIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM--PLPPNDSVWGALLLAC 492 (680)
Q Consensus 430 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~a~ 492 (680)
+.-+..+-++.+....+.|++....+.+.++.|.+++.-|.++++.. +..+...+|..++.-.
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lqEl 132 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQEL 132 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHHHH
Confidence 45566667777777789999999999999999999999999999987 3444555676666443
No 273
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=53.34 E-value=1.2e+02 Score=26.86 Aligned_cols=68 Identities=12% Similarity=0.163 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcCh
Q 037256 382 SWNVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHI-TFTSILSACSHAGLIDEGRKCFADMTKLSVKPEV 450 (680)
Q Consensus 382 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~ 450 (680)
.|-..+..+ ..+...++.++|..|...|+--... -|......+...|++++|.++|+.-++.+-.|-.
T Consensus 82 lWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~ 150 (202)
T 3esl_A 82 IWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYN 150 (202)
T ss_dssp HHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred HHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 454444443 2344668888888888887766554 5666677777888888888888888887667754
No 274
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=51.79 E-value=1e+02 Score=31.20 Aligned_cols=96 Identities=14% Similarity=0.013 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHhhcCCC----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCCHHHHH--
Q 037256 349 LRNAVMDMYAKCGDLDTAENMFNDIHPS----ERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEE---GVKPDHITFT-- 419 (680)
Q Consensus 349 ~~~~li~~y~k~g~~~~A~~~f~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~t~~-- 419 (680)
+...+.+.|.++|++++|.+.|.++... +.-+..+-.+|..+...+++..+...+.+.... +-.|+...-.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 4455667777777777777777766221 222445666667777777777777777766532 2223222111
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhhc
Q 037256 420 SILSACSHAGLIDEGRKCFADMTKL 444 (680)
Q Consensus 420 ~ll~a~~~~g~~~~a~~~~~~m~~~ 444 (680)
.-...+...+++..|.+.|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1111234567777777777665543
No 275
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=50.32 E-value=1.3e+02 Score=28.87 Aligned_cols=56 Identities=7% Similarity=0.052 Sum_probs=33.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCC--hhHHHHHHHHHHHcCC--hhHHHHHHHHHHh
Q 037256 250 NSIVAMYARCGNVEKARLVFDMMEKRD--LISWNSMLTGYIQNGQ--ASEALLLFDEMQN 305 (680)
Q Consensus 250 ~~Li~~y~~~g~~~~A~~~f~~m~~~~--~~~~~~li~~~~~~g~--~~~A~~~~~~m~~ 305 (680)
.+++.-|...|+.++|...++++..|. ......+|..-...++ -+-+-.++..+..
T Consensus 7 ~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~ 66 (307)
T 2zu6_B 7 TPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG 66 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 567788888899999999999887653 1222233333333332 2234456666654
No 276
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=48.82 E-value=38 Score=31.20 Aligned_cols=88 Identities=10% Similarity=-0.112 Sum_probs=45.4
Q ss_pred HHhCCCchHHHHHHHHHHhCCCCCCcc-------cHHHHHHHHh--ccCChHHHHHHHHHHHHhCC---------CCchh
Q 037256 85 YANNGHCVETLELYSTMRRSGISSNSY-------TFPFVLKACA--SNSLILEGKVVHGDIIRTGF---------LSDSY 146 (680)
Q Consensus 85 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-------t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~---------~~~~~ 146 (680)
.++.|+.+....+++.+.+.|..++.. -.+.|..++. +.|+.+-++.+++.-...+. .....
T Consensus 12 A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~ 91 (260)
T 3jxi_A 12 IVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYY 91 (260)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSE
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccccccc
Confidence 345677777777777776666655533 2334444432 55777666666655433110 00000
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCC
Q 037256 147 VQAALVDMYAKCGQTDDGCKVFDEMS 172 (680)
Q Consensus 147 ~~~~Li~~~~~~g~~~~A~~~f~~~~ 172 (680)
...+.+...+..|+.+-+.-+++.-.
T Consensus 92 ~g~t~L~~A~~~g~~~~v~~Ll~~ga 117 (260)
T 3jxi_A 92 RGQTALHIAIERRCKHYVELLVEKGA 117 (260)
T ss_dssp ESBCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence 11223344455677776666666433
No 277
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=48.12 E-value=2.2e+02 Score=28.36 Aligned_cols=107 Identities=10% Similarity=0.038 Sum_probs=49.3
Q ss_pred CChHHHHHHhhhccCC-CCCcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCc---ccHHHHHHHHhccCChHHHHH
Q 037256 56 GEPNTARSLFNSIHND-KSYSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNS---YTFPFVLKACASNSLILEGKV 131 (680)
Q Consensus 56 g~~~~A~~~f~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~t~~~ll~~~~~~~~~~~a~~ 131 (680)
|+++-...+++.-... .+|...++. +...++.|+.+-+.. +.+.|..++. ... +.+...+..|+.+
T Consensus 25 g~~~~v~~Ll~~g~~~~~~~~~~~t~-L~~A~~~g~~~~v~~----Ll~~g~~~~~~~~~g~-t~L~~A~~~g~~~---- 94 (437)
T 1n11_A 25 GHLPIVKNLLQRGASPNVSNVKVETP-LHMAARAGHTEVAKY----LLQNKAKVNAKAKDDQ-TPLHCAARIGHTN---- 94 (437)
T ss_dssp TCHHHHHHHHHTTCCSCCSSSCCCCH-HHHHHHHTCHHHHHH----HHHHTCCSSCCCTTSC-CHHHHHHHHTCHH----
T ss_pred CCHHHHHHHHHcCCCCCCCCCCCCCH-HHHHHHcCCHHHHHH----HHhCCCCCCCCCCCCC-CHHHHHHHCCCHH----
Confidence 7777777776642221 112222223 333344565543333 3334443332 222 2334444556654
Q ss_pred HHHHHHHhCCCCchh--HHHHHHHHHHhcCChHHHHHHHhcCC
Q 037256 132 VHGDIIRTGFLSDSY--VQAALVDMYAKCGQTDDGCKVFDEMS 172 (680)
Q Consensus 132 ~~~~~~~~g~~~~~~--~~~~Li~~~~~~g~~~~A~~~f~~~~ 172 (680)
+.+.+++.|..++.. ...+.+...++.|+.+.+..+++.-.
T Consensus 95 ~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~ 137 (437)
T 1n11_A 95 MVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEA 137 (437)
T ss_dssp HHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred HHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Confidence 344445556544321 11223444556777777777776543
No 278
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=47.08 E-value=1.7e+02 Score=26.74 Aligned_cols=107 Identities=8% Similarity=-0.001 Sum_probs=52.0
Q ss_pred CChHHHHHHhhhccCC--CCCcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcc---cHHHHHHHHhccCChHHHH
Q 037256 56 GEPNTARSLFNSIHND--KSYSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSY---TFPFVLKACASNSLILEGK 130 (680)
Q Consensus 56 g~~~~A~~~f~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~~~~~~~~~~~a~ 130 (680)
|+++....+++.-... ..+..-++ .+...++.|+. ++++.+.+.|..|+.. ..+ .+...+..|+.+
T Consensus 16 g~~~~v~~Ll~~g~~~~~~~~~~g~t-~L~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~--- 86 (285)
T 1wdy_A 16 EDVDLVQQLLEGGANVNFQEEEGGWT-PLHNAVQMSRE----DIVELLLRHGADPVLRKKNGAT-PFLLAAIAGSVK--- 86 (285)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTTCCC-HHHHHHHTTCH----HHHHHHHHTTCCTTCCCTTCCC-HHHHHHHHTCHH---
T ss_pred CCHHHHHHHHHcCCCcccccCCCCCc-HHHHHHHcCCH----HHHHHHHHcCCCCcccCCCCCC-HHHHHHHcCCHH---
Confidence 8887777777654322 00111122 33444555654 3444555566555432 222 333334455544
Q ss_pred HHHHHHHHhCCCCchh--HHHHHHHHHHhcCChHHHHHHHhcCC
Q 037256 131 VVHGDIIRTGFLSDSY--VQAALVDMYAKCGQTDDGCKVFDEMS 172 (680)
Q Consensus 131 ~~~~~~~~~g~~~~~~--~~~~Li~~~~~~g~~~~A~~~f~~~~ 172 (680)
+.+.+++.|..++.. ...+.+...+..|+.+-...+++.-.
T Consensus 87 -~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~ 129 (285)
T 1wdy_A 87 -LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGA 129 (285)
T ss_dssp -HHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTC
T ss_pred -HHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCC
Confidence 444455566544321 11223444556777777766666544
No 279
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=45.88 E-value=1.3e+02 Score=25.99 Aligned_cols=49 Identities=10% Similarity=0.098 Sum_probs=24.0
Q ss_pred CChHHHHHHhhhcc-CC-CCCcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCC
Q 037256 56 GEPNTARSLFNSIH-ND-KSYSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSN 109 (680)
Q Consensus 56 g~~~~A~~~f~~~~-~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 109 (680)
|+.+....++..-. .. .+|..-++.|..+ ++.|+. ++++.+.+.|..++
T Consensus 16 g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-~~~~~~----~~v~~Ll~~g~~~~ 66 (201)
T 3hra_A 16 RDTKKVKEILQDTTYQVDEVDTEGNTPLNIA-VHNNDI----EIAKALIDRGADIN 66 (201)
T ss_dssp TCHHHHHHHHTCTTCCTTCCCTTSCCHHHHH-HHHTCH----HHHHHHHHTTCCTT
T ss_pred ccHHHHHHHHHcCCCCCCCCCCCCCCHHHHH-HHcCCH----HHHHHHHHcCCCCC
Confidence 77777777776543 11 1133333444333 334443 34444555565554
No 280
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=44.96 E-value=2.1e+02 Score=27.96 Aligned_cols=28 Identities=11% Similarity=0.240 Sum_probs=21.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCC
Q 037256 249 QNSIVAMYARCGNVEKARLVFDMMEKRD 276 (680)
Q Consensus 249 ~~~Li~~y~~~g~~~~A~~~f~~m~~~~ 276 (680)
..++|.=|...|+.++|...++++..+.
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~~p~ 84 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLNLGE 84 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTTCCG
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhCCch
Confidence 3567777888888888888888887653
No 281
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=44.73 E-value=1.1e+02 Score=27.27 Aligned_cols=56 Identities=7% Similarity=-0.052 Sum_probs=35.0
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCchh--HHHHHHHHHHhcCChHHHHHHHhcCC
Q 037256 117 LKACASNSLILEGKVVHGDIIRTGFLSDSY--VQAALVDMYAKCGQTDDGCKVFDEMS 172 (680)
Q Consensus 117 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~Li~~~~~~g~~~~A~~~f~~~~ 172 (680)
+...+..|+.+..+.+++.+.+.|..++.. ...+.+...+..|+.+-+..+++.-.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 70 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGA 70 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 444556788888888888777776554432 12234455566777777776666443
No 282
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=43.22 E-value=1.6e+02 Score=25.42 Aligned_cols=45 Identities=9% Similarity=0.144 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCC
Q 037256 248 IQNSIVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQ 292 (680)
Q Consensus 248 ~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~ 292 (680)
+...-+....+.|.-+....+.+.+..+|...-...+.++.+.+.
T Consensus 30 vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~ 74 (201)
T 3ltj_A 30 VRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGD 74 (201)
T ss_dssp HHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence 333333344444433333333334444444443344444444443
No 283
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=41.01 E-value=8.6 Score=23.70 Aligned_cols=17 Identities=29% Similarity=0.686 Sum_probs=11.4
Q ss_pred CCccccc-cCccccCCCC
Q 037256 663 ANRFHHF-EGGTCSCNDY 679 (680)
Q Consensus 663 ~~~~h~~-~~g~csc~~~ 679 (680)
|-.-|.. .+|.||||-|
T Consensus 12 CPkPHRL~~~~~C~CG~y 29 (42)
T 2l0z_A 12 CPLPHRLNSLGGCRCGKY 29 (42)
T ss_dssp CCTTSCCCTTSSBTTTTB
T ss_pred CCCCceecCCceeccccc
Confidence 4444444 4899999976
No 284
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=39.56 E-value=1.2e+02 Score=26.97 Aligned_cols=106 Identities=11% Similarity=0.022 Sum_probs=44.3
Q ss_pred CChHHHHHHhhhccCC-CCCcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCccc---HHHHHHHHhccCChHHHHH
Q 037256 56 GEPNTARSLFNSIHND-KSYSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYT---FPFVLKACASNSLILEGKV 131 (680)
Q Consensus 56 g~~~~A~~~f~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t---~~~ll~~~~~~~~~~~a~~ 131 (680)
|+++....+++.-... .++..-++ .+...++.|+.+ +++.+.+.|..++... -.+.+...+..++.+
T Consensus 20 g~~~~~~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~----~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~---- 90 (240)
T 3eu9_A 20 GIYERCRELVEAGYDVRQPDKENVT-LLHWAAINNRID----LVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLS---- 90 (240)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCC-HHHHHHHTTCHH----HHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHH----
T ss_pred CChHHHHHHHHcCCCcCCCCCCCCC-HHHHHHHhCCHH----HHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHH----
Confidence 6766666666543221 11222122 333444555543 3344444444333221 112333334445544
Q ss_pred HHHHHHHhCCCCchh--HHHHHHHHHHhcCChHHHHHHHhc
Q 037256 132 VHGDIIRTGFLSDSY--VQAALVDMYAKCGQTDDGCKVFDE 170 (680)
Q Consensus 132 ~~~~~~~~g~~~~~~--~~~~Li~~~~~~g~~~~A~~~f~~ 170 (680)
+.+.+++.|..++.. ...+.+...+..|+.+-+..+++.
T Consensus 91 ~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 131 (240)
T 3eu9_A 91 MVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAK 131 (240)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhc
Confidence 333444555444321 111233344455666655555554
No 285
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=38.75 E-value=83 Score=29.52 Aligned_cols=16 Identities=13% Similarity=-0.242 Sum_probs=6.9
Q ss_pred HHHhcCChHHHHHHHh
Q 037256 154 MYAKCGQTDDGCKVFD 169 (680)
Q Consensus 154 ~~~~~g~~~~A~~~f~ 169 (680)
..+..|+.+-+..+++
T Consensus 68 ~A~~~g~~~~v~~Ll~ 83 (285)
T 3kea_A 68 QAATLEDTKIVKILLF 83 (285)
T ss_dssp HHTTSSSCHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHH
Confidence 3344444444444443
No 286
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=38.08 E-value=2.1e+02 Score=25.23 Aligned_cols=56 Identities=9% Similarity=0.057 Sum_probs=38.7
Q ss_pred HHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcc-----hHHHHHHHHHHHHcCCC
Q 037256 288 IQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGS-----RQLGRKFHGYIINSNMK 344 (680)
Q Consensus 288 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~-----~~~a~~i~~~~~~~~~~ 344 (680)
.+..+.+.|+-.+-+|.+.| .|..+.-..++.+.-..|. +..+...++.....|.+
T Consensus 25 iRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 25 IRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp HHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred HhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 46689999999999999999 7776666666666655553 34444555555555543
No 287
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=37.87 E-value=2e+02 Score=25.00 Aligned_cols=146 Identities=11% Similarity=0.076 Sum_probs=71.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHH
Q 037256 252 IVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLG 331 (680)
Q Consensus 252 Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 331 (680)
.+..+.+.|..+....+.+.+..+|...-...+.++.+.+.. ++...+.++.. .+|...-...+.+....+..+..
T Consensus 39 A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~~ 114 (211)
T 3ltm_A 39 AAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAAVALGQIGDERAV 114 (211)
T ss_dssp HHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGH
T ss_pred HHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCcHHHH
Confidence 333344444433333333444444544444445555555542 23333333332 34555555555555555554332
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 037256 332 RKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLE 408 (680)
Q Consensus 332 ~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 408 (680)
..+.. +. -.++..+-...+.++.+.|..+....+...+ ..++...-...+.++.+.+. .++...+.++.+
T Consensus 115 ~~L~~-~l---~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l--~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 115 EPLIK-AL---KDEDWFVRIAAAFALGEIGDERAVEPLIKAL--KDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp HHHHH-HT---TCSSHHHHHHHHHHHHHHCCGGGHHHHHHHT--TCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred HHHHH-HH---hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH--cCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 22222 22 2456666666777777777654433344434 45555555556666666665 456666666655
No 288
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=37.80 E-value=1.8e+02 Score=24.37 Aligned_cols=65 Identities=12% Similarity=0.177 Sum_probs=44.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCC---hhHHHHHHHHHHHcCC--hhHHHHHHHHHHhCCCCCCHh
Q 037256 249 QNSIVAMYARCGNVEKARLVFDMMEKRD---LISWNSMLTGYIQNGQ--ASEALLLFDEMQNSDCKPNPV 313 (680)
Q Consensus 249 ~~~Li~~y~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~ 313 (680)
.+.++.=|...|+.++|.+.++++..|. .+....+..++-+.++ .+.+..++..+...|+-+...
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q 81 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 81 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 3567888888999999999999987652 3344555555555332 456778888888777544433
No 289
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=35.34 E-value=1.8e+02 Score=27.03 Aligned_cols=106 Identities=11% Similarity=0.043 Sum_probs=51.0
Q ss_pred CChHHHHHHhhhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHHHHHHHHH
Q 037256 56 GEPNTARSLFNSIHNDKSYSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILEGKVVHGD 135 (680)
Q Consensus 56 g~~~~A~~~f~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 135 (680)
.+..+..+++..-.-..+|..-++.|.. .++.|+.+-+ +.+.+.|..++...-.+.+...+..|+.+-++.
T Consensus 10 ~~~~~v~~lL~~~~~~~~d~~g~t~L~~-A~~~g~~~~v----~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~---- 80 (285)
T 3kea_A 10 WKSKQLKSFLSSKDTFKADVHGHSASYY-AIADNNVRLV----CTLLNAGALKNLLENEFPLHQAATLEDTKIVKI---- 80 (285)
T ss_dssp CCHHHHHHHHHSTTTTCCCTTSCCHHHH-HHHTTCHHHH----HHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHH----
T ss_pred cCHHHHHHHHHhCCCCccCCCCCCHHHH-HHHcCCHHHH----HHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHH----
Confidence 5555666666432211223333444433 3456665544 444445555544332345555666777665444
Q ss_pred HHHhCCCCchh--HHHHHHHHHHhcCChHHHHHHHhc
Q 037256 136 IIRTGFLSDSY--VQAALVDMYAKCGQTDDGCKVFDE 170 (680)
Q Consensus 136 ~~~~g~~~~~~--~~~~Li~~~~~~g~~~~A~~~f~~ 170 (680)
+++.|..++.. ...+.+...+..|+.+-+.-+++.
T Consensus 81 Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ 117 (285)
T 3kea_A 81 LLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKK 117 (285)
T ss_dssp HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhc
Confidence 44566554421 112233344556666665555554
No 290
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=35.13 E-value=1.4e+02 Score=27.39 Aligned_cols=97 Identities=12% Similarity=0.024 Sum_probs=53.0
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCC-------CcccHHHHHHHHh--ccCChHHHHHHHHHHHHhC----
Q 037256 74 YSFLWNTMIRAYANNGHCVETLELYSTMRRSGISS-------NSYTFPFVLKACA--SNSLILEGKVVHGDIIRTG---- 140 (680)
Q Consensus 74 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-------~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g---- 140 (680)
|..-++.|..+ ++.|+.+....+++...+.+... |..-.+.|..++. +.|+.+-++.+++.-...+
T Consensus 10 d~~g~t~L~~A-~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~ 88 (273)
T 2pnn_A 10 RLYDRRSIFDA-VAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQ 88 (273)
T ss_dssp -CCCHHHHHHH-HHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHH
T ss_pred CcccchHHHHH-HHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhH
Confidence 44445555544 56788888888888776665433 3344555655554 3577777777666543211
Q ss_pred -----CC-CchhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 037256 141 -----FL-SDSYVQAALVDMYAKCGQTDDGCKVFDEMS 172 (680)
Q Consensus 141 -----~~-~~~~~~~~Li~~~~~~g~~~~A~~~f~~~~ 172 (680)
.. .|.. ..+.+...+..|+.+-+..+++.-.
T Consensus 89 ~i~~~~~~~d~~-g~tpL~~A~~~g~~~~v~~Ll~~ga 125 (273)
T 2pnn_A 89 FVNASYTDSYYK-GQTALHIAIERRNMTLVTLLVENGA 125 (273)
T ss_dssp HHTCCCCSTTTT-TCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HhhcccccccCC-CCCHHHHHHHcCCHHHHHHHHHCCC
Confidence 00 1111 2223334456677777776766543
No 291
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=34.87 E-value=2.1e+02 Score=25.99 Aligned_cols=84 Identities=13% Similarity=0.103 Sum_probs=0.0
Q ss_pred HHHHHHcCChhHHHHHHHHHHhC--CCCC----CHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCCchHHHHHHHHHH
Q 037256 284 LTGYIQNGQASEALLLFDEMQNS--DCKP----NPVTALILVSACTYLGSRQLGRKFHGYIINSNMKIDATLRNAVMDMY 357 (680)
Q Consensus 284 i~~~~~~g~~~~A~~~~~~m~~~--g~~p----~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y 357 (680)
+..+....++++|.+++++..+. ++++ +.......+..-.....-..+..+.+.+.. ..+.......+..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHH
Q ss_pred HHcCCHHHHHHHH
Q 037256 358 AKCGDLDTAENMF 370 (680)
Q Consensus 358 ~k~g~~~~A~~~f 370 (680)
.+.|+-++|.++|
T Consensus 102 ~rLg~~~~A~~lf 114 (235)
T 2d2s_A 102 IKLGLPEQALDLF 114 (235)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHCCChhHHHHHH
No 292
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=34.81 E-value=2.2e+02 Score=24.51 Aligned_cols=24 Identities=13% Similarity=0.028 Sum_probs=9.5
Q ss_pred HhcCCCCChhHHHHHHHHHHhCCC
Q 037256 168 FDEMSVRDLVSWTVMITAYEQAEK 191 (680)
Q Consensus 168 f~~~~~~~~~~~~~li~~~~~~g~ 191 (680)
.+.+..+|...-...+.++.+.|.
T Consensus 51 ~~~l~~~~~~vr~~a~~~L~~~~~ 74 (201)
T 3ltj_A 51 IKALKDEDAWVRRAAADALGQIGD 74 (201)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHcCCCHHHHHHHHHHHHhhCC
Confidence 333333444333334444444443
No 293
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=34.40 E-value=2.8e+02 Score=25.51 Aligned_cols=58 Identities=16% Similarity=0.225 Sum_probs=24.5
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 037256 346 DATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLE 408 (680)
Q Consensus 346 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 408 (680)
+..+-...+.++.+.|+.+....+...+ ..+++ -...+.++.+.|.. +++..+.++.+
T Consensus 205 ~~~vR~~A~~aL~~~~~~~~~~~L~~~l--~d~~v--r~~a~~aL~~i~~~-~~~~~L~~~l~ 262 (280)
T 1oyz_A 205 NEEVRIEAIIGLSYRKDKRVLSVLCDEL--KKNTV--YDDIIEAAGELGDK-TLLPVLDTMLY 262 (280)
T ss_dssp CHHHHHHHHHHHHHTTCGGGHHHHHHHH--TSSSC--CHHHHHHHHHHCCG-GGHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhCCHhhHHHHHHHh--cCccH--HHHHHHHHHhcCch-hhhHHHHHHHh
Confidence 3444444445555555443333333333 22221 12234444444542 45555555544
No 294
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=33.97 E-value=2.1e+02 Score=24.00 Aligned_cols=53 Identities=9% Similarity=0.174 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcCh
Q 037256 398 KALEFFSQMLEEGVKPDHI-TFTSILSACSHAGLIDEGRKCFADMTKLSVKPEV 450 (680)
Q Consensus 398 ~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~ 450 (680)
++.++|..|...|+--... -|......+...|++++|.++|+.-++.+-.|-.
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 4778888888877665544 5666666777788888888888887777666654
No 295
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=33.60 E-value=1.9e+02 Score=23.38 Aligned_cols=64 Identities=13% Similarity=0.189 Sum_probs=44.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCC---hhHHHHHHHHHHHcCC--hhHHHHHHHHHHhCCCCCCHh
Q 037256 250 NSIVAMYARCGNVEKARLVFDMMEKRD---LISWNSMLTGYIQNGQ--ASEALLLFDEMQNSDCKPNPV 313 (680)
Q Consensus 250 ~~Li~~y~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~~~ 313 (680)
+.++.=|...|+.++|.+.++++..|. .+....+..++-+.++ .+.+..++..+...|+-+...
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q 79 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 79 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 567888888999999999999987652 2344555556555432 456788888888777554433
No 296
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=31.79 E-value=2.3e+02 Score=24.94 Aligned_cols=45 Identities=16% Similarity=0.315 Sum_probs=33.7
Q ss_pred HHHHH---HHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcc
Q 037256 283 MLTGY---IQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGS 327 (680)
Q Consensus 283 li~~~---~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 327 (680)
+|+++ .+..+.+.|+-.+-+|++.|-.|..+.-..++.+.-..|.
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGl 57 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGN 57 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 45554 4568899999999999999988877766666666655553
No 297
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=30.98 E-value=1.3e+02 Score=26.72 Aligned_cols=19 Identities=16% Similarity=0.155 Sum_probs=10.1
Q ss_pred HHHHHhcCChHHHHHHHhc
Q 037256 152 VDMYAKCGQTDDGCKVFDE 170 (680)
Q Consensus 152 i~~~~~~g~~~~A~~~f~~ 170 (680)
+...+..|+.+-+..+++.
T Consensus 81 L~~A~~~~~~~~~~~Ll~~ 99 (237)
T 3b7b_A 81 LHLAAKKGHYEVVQYLLSN 99 (237)
T ss_dssp HHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHhC
Confidence 3334455666655555554
No 298
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=30.63 E-value=4.7e+02 Score=28.08 Aligned_cols=19 Identities=16% Similarity=0.300 Sum_probs=12.9
Q ss_pred HHHhcCCHHHHHHHHHhcC
Q 037256 255 MYARCGNVEKARLVFDMME 273 (680)
Q Consensus 255 ~y~~~g~~~~A~~~f~~m~ 273 (680)
-+...|++++|..+|.-..
T Consensus 452 ~ae~~G~~~dAi~LY~La~ 470 (661)
T 2qx5_A 452 RADEDGRIYDSILLYQLAE 470 (661)
T ss_dssp HHHHTTCHHHHHHHHHHTT
T ss_pred HHHHCCCHHHHHHHHHHhc
Confidence 4557788888887765543
No 299
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=30.42 E-value=2.8e+02 Score=24.47 Aligned_cols=81 Identities=14% Similarity=0.134 Sum_probs=45.6
Q ss_pred HHHhhhccCCCCCc---chHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcc-cHHHHHHHHhccCChHHHHHHHHHHH
Q 037256 62 RSLFNSIHNDKSYS---FLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSY-TFPFVLKACASNSLILEGKVVHGDII 137 (680)
Q Consensus 62 ~~~f~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~ 137 (680)
.+.|...+.-+-|. ..|-..+..+ ..++..++.++|..|...|+..... .|......+-..|++.+|.+++..-+
T Consensus 64 ~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI 142 (202)
T 3esl_A 64 LIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGA 142 (202)
T ss_dssp HHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55665554332243 2454444443 2333557777777777766654332 34444455556677777777777766
Q ss_pred HhCCCC
Q 037256 138 RTGFLS 143 (680)
Q Consensus 138 ~~g~~~ 143 (680)
+.+..|
T Consensus 143 ~~~A~P 148 (202)
T 3esl_A 143 ENNCRP 148 (202)
T ss_dssp HTTCBS
T ss_pred HcCCcc
Confidence 666555
No 300
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=30.19 E-value=1.8e+02 Score=24.85 Aligned_cols=148 Identities=10% Similarity=-0.006 Sum_probs=68.7
Q ss_pred HhCCCchHHHHHHHHHHhCCCCC---CcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhH--HHHHHHHHHhcCC
Q 037256 86 ANNGHCVETLELYSTMRRSGISS---NSYTFPFVLKACASNSLILEGKVVHGDIIRTGFLSDSYV--QAALVDMYAKCGQ 160 (680)
Q Consensus 86 ~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~Li~~~~~~g~ 160 (680)
+..|+.+....++..- +..+ |..-.+.|.. .+..|+.+ +.+.+++.|..++... ..+.+...+..|+
T Consensus 13 ~~~g~~~~v~~ll~~~---~~~~~~~~~~g~t~L~~-A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 84 (201)
T 3hra_A 13 ANQRDTKKVKEILQDT---TYQVDEVDTEGNTPLNI-AVHNNDIE----IAKALIDRGADINLQNSISDSPYLYAGAQGR 84 (201)
T ss_dssp HHTTCHHHHHHHHTCT---TCCTTCCCTTSCCHHHH-HHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HHhccHHHHHHHHHcC---CCCCCCCCCCCCCHHHH-HHHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Confidence 4567766665555422 1122 2233333433 44556654 4445556676554321 2233445567788
Q ss_pred hHHHHHHHhcCC-C---CChhHHHHHHHHHHhCCCccHHHHHHHHHHHcC-CCC---CHhHHHHHHHHHhccCChHHHHH
Q 037256 161 TDDGCKVFDEMS-V---RDLVSWTVMITAYEQAEKPEEALILFQKTQQEG-LLS---DSVTIVSVASAVGQLGDVLKAQA 232 (680)
Q Consensus 161 ~~~A~~~f~~~~-~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p---~~~t~~~ll~~~~~~~~~~~a~~ 232 (680)
.+-+..+++.-. . +|...++.| ...+..|+.+ +++.+.+.| ..+ |..-.+.+..++........-.+
T Consensus 85 ~~~~~~Ll~~~~~~~~~~~~~g~t~L-~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~ 159 (201)
T 3hra_A 85 TEILAYMLKHATPDLNKHNRYGGNAL-IPAAEKGHID----NVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQD 159 (201)
T ss_dssp HHHHHHHHHHSCCCTTCCCTTSCCSH-HHHHHTTCHH----HHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHH
T ss_pred HHHHHHHHhccCcccccccCCCCcHH-HHHHHcCCHH----HHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHH
Confidence 888877775432 1 222222222 2334455543 344444444 222 22223334334333322333355
Q ss_pred HHHHHHHccCCCCh
Q 037256 233 VHGYAICNAFLEDL 246 (680)
Q Consensus 233 ~~~~~~~~g~~~~~ 246 (680)
+.+.+++.|..++.
T Consensus 160 ~v~~Ll~~ga~~~~ 173 (201)
T 3hra_A 160 IVKLLMENGADQSI 173 (201)
T ss_dssp HHHHHHHTTCCTTC
T ss_pred HHHHHHHCCCCCCc
Confidence 66666677765543
No 301
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=30.13 E-value=1.2e+02 Score=29.38 Aligned_cols=14 Identities=7% Similarity=0.207 Sum_probs=6.5
Q ss_pred HHcCCHHHHHHHHh
Q 037256 358 AKCGDLDTAENMFN 371 (680)
Q Consensus 358 ~k~g~~~~A~~~f~ 371 (680)
+..|+.+-+..+++
T Consensus 181 ~~~g~~~~v~~Ll~ 194 (364)
T 3ljn_A 181 MEFRNREALDLMMD 194 (364)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHh
Confidence 34455544444444
No 302
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.51 E-value=4.5e+02 Score=27.21 Aligned_cols=123 Identities=15% Similarity=0.219 Sum_probs=70.5
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCH-----hHH-HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHH---
Q 037256 346 DATLRNAVMDMYAKCGDLDTAENMFNDIHPSERNV-----SSW-NVLIAGYGMHGHGRKALEFFSQMLEEGVKPDHI--- 416 (680)
Q Consensus 346 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~-----~~~-~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--- 416 (680)
-..++|.+++.|...+.++.|..+..+..-+..+. ..| --+...+.-.+++.+|.+.+...... .+++..
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk-ap~~~~a~g 308 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK-APHNSKSLG 308 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS-CSCSSSCSH
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCcchhhhh
Confidence 35678899999999999999999999883221111 122 22344566789999999998887763 222221
Q ss_pred ----H--HHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 037256 417 ----T--FTSILSACSHAGLIDEGRKCFADMTKLSVKPEVKHYACMVDMLGRAGCLYEAFDMIKQM 476 (680)
Q Consensus 417 ----t--~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 476 (680)
. |..++... .|++.+ ..+|. +.+.+....-|..|+.++ +.|++++-.+.+++-
T Consensus 309 fr~~a~K~lI~V~LL--lG~iP~-r~lf~---q~~l~~~L~pY~~Lv~Av-r~GdL~~F~~~L~~h 367 (523)
T 4b4t_S 309 FLQQSNKLHCCIQLL--MGDIPE-LSFFH---QSNMQKSLLPYYHLTKAV-KLGDLKKFTSTITKY 367 (523)
T ss_dssp HHHHHHHHHHHHHHH--HTCCCC-HHHHT---TTSCHHHHHHHHHHHHHH-HHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHhHHhh--cCCCCC-hHHhh---chhHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHh
Confidence 1 11111111 233222 11111 112222234477777776 678888776666554
No 303
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=29.18 E-value=2.7e+02 Score=23.71 Aligned_cols=54 Identities=11% Similarity=0.203 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhhhcCCCcChH
Q 037256 398 KALEFFSQMLEEGVKPDHI-TFTSILSACSHAGLIDEGRKCFADMTKLSVKPEVK 451 (680)
Q Consensus 398 ~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~p~~~ 451 (680)
++.++|..|...|+--... .|......+...|++.+|.++|+.-++.+-.|...
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 3667788888877665544 56666666777788888888888877776666543
No 304
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=28.73 E-value=1.7e+02 Score=27.25 Aligned_cols=53 Identities=17% Similarity=0.216 Sum_probs=31.9
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhhhc
Q 037256 390 YGMHGHGRKALEFFSQMLEEGVKPDH-ITFTSILSACSHAGLIDEGRKCFADMTKL 444 (680)
Q Consensus 390 ~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 444 (680)
..+.|+.++|++....-++. .|.. ..=..++.-+|-.|+++.|.+-++...+.
T Consensus 7 ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34566677777766666663 3433 33344555666677777777766666654
No 305
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=28.70 E-value=3.1e+02 Score=24.36 Aligned_cols=62 Identities=16% Similarity=0.294 Sum_probs=42.9
Q ss_pred HHHHH---HHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcc-----hHHHHHHHHHHHHcCCC
Q 037256 283 MLTGY---IQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGS-----RQLGRKFHGYIINSNMK 344 (680)
Q Consensus 283 li~~~---~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~-----~~~a~~i~~~~~~~~~~ 344 (680)
+|+++ .+..+.+.|+-.+-+|.+.|-.|..+.-..++.+.-..|. +..+...++.....|.+
T Consensus 38 ~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 38 VISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 45554 4668999999999999999988877777777777655553 34445555555555543
No 306
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=28.36 E-value=26 Score=26.23 Aligned_cols=47 Identities=21% Similarity=0.247 Sum_probs=34.1
Q ss_pred cccHHHHHHHHHHHHHHHHcCcccCCccccccCchhhhhhhhhhchHHHHHHhcc
Q 037256 568 PYWKEVYKKVESMAVEIKMAGYMPDLSCALHDVEDEDREHMLNYHSEKLAVAFGI 622 (680)
Q Consensus 568 ~~~~~i~~~~~~l~~~m~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 622 (680)
+...+|...+++..++++..|+.||...+- . +...+-+|.+-..||=
T Consensus 13 gdlirIl~~ieekinELk~dG~ePDIiL~G----~----eayef~~e~v~~e~g~ 59 (103)
T 2pk8_A 13 GDLIRILGEIEEKMNELKMDGFNPDIILFG----R----EAYNFLSNLLKKEMEE 59 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCEEEEC----H----HHHHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCCeEEEc----H----HHHHHHHHHHhHhhcc
Confidence 445678888999999999999999986532 1 2234567777777773
No 307
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=27.75 E-value=3.1e+02 Score=24.03 Aligned_cols=46 Identities=7% Similarity=-0.182 Sum_probs=23.6
Q ss_pred HHHHHHHcCCCCCHhH--HHHHHHHHhccCChHHHHHHHHHHHHccCC
Q 037256 198 LFQKTQQEGLLSDSVT--IVSVASAVGQLGDVLKAQAVHGYAICNAFL 243 (680)
Q Consensus 198 ~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 243 (680)
+++.+.+.|..++... -.+.+...+..|+.+.+..+.+.+.+.|..
T Consensus 136 ~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~ 183 (232)
T 2rfa_A 136 IVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGG 183 (232)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCc
Confidence 4444445555443221 112334445566666666666666666643
No 308
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=27.34 E-value=1.7e+02 Score=25.92 Aligned_cols=9 Identities=0% Similarity=-0.138 Sum_probs=3.9
Q ss_pred HHHhCCCCC
Q 037256 302 EMQNSDCKP 310 (680)
Q Consensus 302 ~m~~~g~~p 310 (680)
.+.+.|..+
T Consensus 190 ~Ll~~ga~~ 198 (231)
T 3aji_A 190 FLVTQGASI 198 (231)
T ss_dssp HHHHTTCCS
T ss_pred HHHHCCCCC
Confidence 334445444
No 309
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=26.87 E-value=1.1e+02 Score=27.40 Aligned_cols=17 Identities=18% Similarity=0.300 Sum_probs=8.3
Q ss_pred HHHhcCCHHHHHHHHHh
Q 037256 255 MYARCGNVEKARLVFDM 271 (680)
Q Consensus 255 ~y~~~g~~~~A~~~f~~ 271 (680)
..+..|+.+-+..+++.
T Consensus 83 ~A~~~~~~~~~~~Ll~~ 99 (237)
T 3b7b_A 83 LAAKKGHYEVVQYLLSN 99 (237)
T ss_dssp HHHHTTCHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHhC
Confidence 33445555555555443
No 310
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=26.72 E-value=65 Score=24.67 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=24.1
Q ss_pred CChHHHHHHhhhccCCCCCcchHHHHHHHHHhCCCchHH
Q 037256 56 GEPNTARSLFNSIHNDKSYSFLWNTMIRAYANNGHCVET 94 (680)
Q Consensus 56 g~~~~A~~~f~~~~~~~p~~~~~~~li~~~~~~g~~~~A 94 (680)
.+.+.|+++++.++.+ ...+|..++.++...|+..-|
T Consensus 51 t~~~~ar~Lld~L~~r--G~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETR--GSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTS--CTTHHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHc--ChHHHHHHHHHHHHcCcHHHH
Confidence 3567777777777777 445577777777665654443
No 311
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=26.21 E-value=2.9e+02 Score=23.10 Aligned_cols=62 Identities=11% Similarity=0.266 Sum_probs=41.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHhhcCCCCCC---HhHHHHHHHHHHhcCC--hHHHHHHHHHHHHcCCCC
Q 037256 350 RNAVMDMYAKCGDLDTAENMFNDIHPSERN---VSSWNVLIAGYGMHGH--GRKALEFFSQMLEEGVKP 413 (680)
Q Consensus 350 ~~~li~~y~k~g~~~~A~~~f~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p 413 (680)
.+.++.-|...|+.++|.+.++++ ..|. .+...++..++-+.+. .+.+..++..+...|+-+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL--~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKEL--EVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH--TCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHh--CCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 456788898999999999999999 4332 3344555555555332 345677777777666443
No 312
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=25.04 E-value=2e+02 Score=23.76 Aligned_cols=44 Identities=5% Similarity=-0.065 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 037256 178 SWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAV 221 (680)
Q Consensus 178 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 221 (680)
.-..++..+...+..-.|.++++.+.+.+...+..|.-..|..+
T Consensus 23 qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L 66 (145)
T 2fe3_A 23 QRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVF 66 (145)
T ss_dssp HHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHH
Confidence 33444555555555556666666666655444555544444433
No 313
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=24.61 E-value=1.6e+02 Score=28.56 Aligned_cols=18 Identities=22% Similarity=0.152 Sum_probs=9.9
Q ss_pred HHHHhcCCHHHHHHHHHh
Q 037256 254 AMYARCGNVEKARLVFDM 271 (680)
Q Consensus 254 ~~y~~~g~~~~A~~~f~~ 271 (680)
...+..|+.+-+..+++.
T Consensus 178 ~~A~~~g~~~~v~~Ll~~ 195 (364)
T 3ljn_A 178 MRAMEFRNREALDLMMDT 195 (364)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHhc
Confidence 334455666666655554
No 314
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=23.74 E-value=26 Score=21.83 Aligned_cols=12 Identities=33% Similarity=0.949 Sum_probs=9.9
Q ss_pred cccccchhhhHH
Q 037256 636 NLRVCNDCHSAF 647 (680)
Q Consensus 636 ~l~~~~~~~~~~ 647 (680)
+.|+|.+|+.-+
T Consensus 16 ~YRvC~~CgkPi 27 (44)
T 2lo3_A 16 QYRVCEKCGKPL 27 (44)
T ss_dssp CEEECTTTCCEE
T ss_pred cchhhcccCCcc
Confidence 899999998643
No 315
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.10 E-value=6.3e+02 Score=26.09 Aligned_cols=61 Identities=18% Similarity=0.182 Sum_probs=39.9
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCC-cccHHH-------HHHHHhccCChHHHHHHHHHHHHh
Q 037256 75 SFLWNTMIRAYANNGHCVETLELYSTMRRSGISSN-SYTFPF-------VLKACASNSLILEGKVVHGDIIRT 139 (680)
Q Consensus 75 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~-------ll~~~~~~~~~~~a~~~~~~~~~~ 139 (680)
...+|.+++.|...+.++.|..+..+.. -|. ...-+. +-+...-.+++.+|.+.+....+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~----fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE----YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC----SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc----CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4568888899999999999988888764 121 111111 223345567788887777776654
No 316
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=23.06 E-value=1.7e+02 Score=24.10 Aligned_cols=27 Identities=7% Similarity=0.129 Sum_probs=12.4
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHhCC
Q 037256 79 NTMIRAYANNGHCVETLELYSTMRRSG 105 (680)
Q Consensus 79 ~~li~~~~~~g~~~~A~~~~~~m~~~g 105 (680)
-.++..+...+..-.|.++++.+.+.+
T Consensus 25 ~~Il~~L~~~~~~~sa~ei~~~l~~~~ 51 (145)
T 2fe3_A 25 HAILEYLVNSMAHPTADDIYKALEGKF 51 (145)
T ss_dssp HHHHHHHHHCSSCCCHHHHHHHHGGGC
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhC
Confidence 334444444444444555555554443
No 317
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=22.95 E-value=1.6e+02 Score=26.07 Aligned_cols=19 Identities=11% Similarity=0.146 Sum_probs=11.7
Q ss_pred HHHHHhcCCHHHHHHHHHh
Q 037256 253 VAMYARCGNVEKARLVFDM 271 (680)
Q Consensus 253 i~~y~~~g~~~~A~~~f~~ 271 (680)
+...++.|+++....+++.
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 4445566777766666654
No 318
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=22.40 E-value=7.2e+02 Score=26.38 Aligned_cols=367 Identities=11% Similarity=-0.017 Sum_probs=185.2
Q ss_pred CChHHHHHHhhhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHHHhCCCCCCcccHHHHHHHHhccCChHH--HHHHH
Q 037256 56 GEPNTARSLFNSIHNDKSYSFLWNTMIRAYANNGHCVETLELYSTMRRSGISSNSYTFPFVLKACASNSLILE--GKVVH 133 (680)
Q Consensus 56 g~~~~A~~~f~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~--a~~~~ 133 (680)
+++..-...|.. +.. +...--....+....|+..+|....+.+-..|. ........++..+.+.|.+.. ..+-+
T Consensus 86 ~~w~~~l~~~~~-~p~--~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~g~lt~~~~~~R~ 161 (618)
T 1qsa_A 86 EDWRGLLAFSPE-KPG--TTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASGKQDPLAYLERI 161 (618)
T ss_dssp TCHHHHHHHCCS-CCS--SHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred CCHHHHHHhccC-CCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHCCCCCHHHHHHHH
Confidence 778877776655 222 333334456677788888888888888776653 355667778888776654432 22222
Q ss_pred HHHHHhC-----------CCCch-hHHHHHHHHHHhcCChHHHHHHHhcCCCCChh---HHHHHHHHHHhCCCccHHHHH
Q 037256 134 GDIIRTG-----------FLSDS-YVQAALVDMYAKCGQTDDGCKVFDEMSVRDLV---SWTVMITAYEQAEKPEEALIL 198 (680)
Q Consensus 134 ~~~~~~g-----------~~~~~-~~~~~Li~~~~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~ 198 (680)
..+...| +.++. .....++..+.+ ...+........ ++.. .+...+.-+.+. +++.|...
T Consensus 162 ~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~---p~~~~~~~~~~~-~~~~~~~~~~~~~~rlar~-d~~~A~~~ 236 (618)
T 1qsa_A 162 RLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFARTTG-ATDFTRQMAAVAFASVARQ-DAENARLM 236 (618)
T ss_dssp HHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHHSC-CCHHHHHHHHHHHHHHHHH-CHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhC---hHhHHHHHhccC-CChhhHHHHHHHHHHHHhc-CHHHHHHH
Confidence 3333322 11111 112223322222 222222222221 1111 112223333333 78899999
Q ss_pred HHHHHHcCCCCCHhHHHH----HHHHHhccCChHHHHHHHHHHHHccCCCChhHHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 037256 199 FQKTQQEGLLSDSVTIVS----VASAVGQLGDVLKAQAVHGYAICNAFLEDLCIQNSIVAMYARCGNVEKARLVFDMMEK 274 (680)
Q Consensus 199 ~~~m~~~g~~p~~~t~~~----ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~ 274 (680)
|....... ..+...... +.......+...++...+....... .+.....-.+....+.|+++.|...|+.|..
T Consensus 237 ~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~ 313 (618)
T 1qsa_A 237 IPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPM 313 (618)
T ss_dssp HHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCT
T ss_pred HHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHccc
Confidence 98886543 223333222 2223334453455555555544332 3333344455555678999999999999986
Q ss_pred CC---hhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHHHHHHHHHHHcCCCC---ch-
Q 037256 275 RD---LISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLGRKFHGYIINSNMKI---DA- 347 (680)
Q Consensus 275 ~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~i~~~~~~~~~~~---~~- 347 (680)
.. ....-=+..++...|+.++|..+|+.+... .+|-.++.+ .+.|..... . .....+ ..
T Consensus 314 ~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~------~~fYg~lAa-~~Lg~~~~~-~------~~~~~~~~~~~~ 379 (618)
T 1qsa_A 314 EAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ------RGFYPMVAA-QRIGEEYEL-K------IDKAPQNVDSAL 379 (618)
T ss_dssp TGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS------CSHHHHHHH-HHTTCCCCC-C------CCCCCSCCCCHH
T ss_pred cccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC------CChHHHHHH-HHcCCCCCC-C------CCCCChhHHhhh
Confidence 32 222222445777899999999999998742 244444422 222211000 0 000000 00
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHhhcCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC----CCCHHHHHHH
Q 037256 348 --TLRNAVMDMYAKCGDLDTAENMFNDIHPSERNVSSWNVLIAGYGMHGHGRKALEFFSQMLEEGV----KPDHITFTSI 421 (680)
Q Consensus 348 --~~~~~li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~----~p~~~t~~~l 421 (680)
.-.-.-+..+...|....|...+..+... .+......+.......|.++.++.........+. -|. .|..+
T Consensus 380 ~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~-~~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~~~P~--~y~~~ 456 (618)
T 1qsa_A 380 TQGPEMARVRELMYWNLDNTARSEWANLVKS-KSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERFPL--AYNDL 456 (618)
T ss_dssp HHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHHSCC--TTHHH
T ss_pred ccChHHHHHHHHHHCCChhhHHHHHHHHHhc-CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhhhCCc--chHHH
Confidence 01112345567789999998887776332 3333333444444567777777655543222110 011 24455
Q ss_pred HHHHHccCCHHHHHHHHHHhhhcCCCcChH
Q 037256 422 LSACSHAGLIDEGRKCFADMTKLSVKPEVK 451 (680)
Q Consensus 422 l~a~~~~g~~~~a~~~~~~m~~~~~~p~~~ 451 (680)
+...++.-.++..+-.---..+.++.|+..
T Consensus 457 i~~~a~~~gv~~~ll~Ai~~~ES~f~p~a~ 486 (618)
T 1qsa_A 457 FKRYTSGKEIPQSYAMAIARQESAWNPKVK 486 (618)
T ss_dssp HHHHHTTSSSCHHHHHHHHHHHHTTCTTCB
T ss_pred HHHHHHHcCCCHHHHHHHHHHhCCCCCCCc
Confidence 555555444444332222223346666543
No 319
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=22.27 E-value=98 Score=28.25 Aligned_cols=109 Identities=10% Similarity=0.007 Sum_probs=54.7
Q ss_pred CChHHHHHHhhhccCC--CCC-------cchHHHHHHHHH--hCCCchHHHHHHHHHHhCC---------CC-CCcccHH
Q 037256 56 GEPNTARSLFNSIHND--KSY-------SFLWNTMIRAYA--NNGHCVETLELYSTMRRSG---------IS-SNSYTFP 114 (680)
Q Consensus 56 g~~~~A~~~f~~~~~~--~p~-------~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g---------~~-p~~~t~~ 114 (680)
|+++....+++.+... .++ ..-++.|..+.. +.|+.+-+..+++.-...+ +. .|..-.+
T Consensus 16 g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t 95 (260)
T 3jxi_A 16 GSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQT 95 (260)
T ss_dssp TCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBC
T ss_pred CCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCC
Confidence 7777666666532221 111 223445554432 5677776666666543211 11 1112333
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCchhH----------------HHHHHHHHHhcCChHHHHHHHh
Q 037256 115 FVLKACASNSLILEGKVVHGDIIRTGFLSDSYV----------------QAALVDMYAKCGQTDDGCKVFD 169 (680)
Q Consensus 115 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~----------------~~~Li~~~~~~g~~~~A~~~f~ 169 (680)
.| ...+..|+.+- .+.+++.|..++... ..+.+...+..|+.+-+..+++
T Consensus 96 ~L-~~A~~~g~~~~----v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 161 (260)
T 3jxi_A 96 AL-HIAIERRCKHY----VELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE 161 (260)
T ss_dssp HH-HHHHHTTCHHH----HHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred HH-HHHHHcCCHHH----HHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 33 44445566654 444556676655432 3344455566777777777776
No 320
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=22.24 E-value=6.7e+02 Score=28.33 Aligned_cols=129 Identities=7% Similarity=-0.045 Sum_probs=73.5
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHhhhcchHHH
Q 037256 252 IVAMYARCGNVEKARLVFDMMEKRDLISWNSMLTGYIQNGQASEALLLFDEMQNSDCKPNPVTALILVSACTYLGSRQLG 331 (680)
Q Consensus 252 Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 331 (680)
++..+...|..+-|.++....+. ++..--.+..+|...|++++|...|++.- .|+..+...... .+..
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~----------~~~~ 883 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAV----------LREF 883 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGG----------GHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccc----------hhhh
Confidence 66777888999988877666654 55544567788999999999999998864 333322111000 0000
Q ss_pred HHHHHHHHHcCCCCchHHHHHHHHHHHHcCCHHHHHHHHhhcCC--CCCC----HhHHHHHHHHHHhcC
Q 037256 332 RKFHGYIINSNMKIDATLRNAVMDMYAKCGDLDTAENMFNDIHP--SERN----VSSWNVLIAGYGMHG 394 (680)
Q Consensus 332 ~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~--~~~~----~~~~~~li~~~~~~g 394 (680)
..+.... + .......-|.-++..+-+.+.++.+.+.-+.... ...| ...|+.+..+.+..|
T Consensus 884 ~~ll~~~-e-~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 884 QEIAEKY-H-HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHT-T-TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhccCcc-c-ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 0011000 0 0011223567777888888888877665554321 1122 235777777666544
No 321
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=22.07 E-value=4e+02 Score=25.69 Aligned_cols=59 Identities=12% Similarity=0.197 Sum_probs=36.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhcCCCCCC---HhHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCC
Q 037256 351 NAVMDMYAKCGDLDTAENMFNDIHPSERN---VSSWNVLIAGYGMHG-HGRKALEFFSQMLEEGV 411 (680)
Q Consensus 351 ~~li~~y~k~g~~~~A~~~f~~~~~~~~~---~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~ 411 (680)
..++.-|...|++++|.+.++++ ..|. .+....+..++-+.. .-+.+..++..+.+.|+
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el--~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~ 77 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQEL--ASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGH 77 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTT--CCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHc--CCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCC
Confidence 56788888899999999999998 4332 222333333332211 23455667777776654
No 322
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=22.06 E-value=4.1e+02 Score=23.42 Aligned_cols=44 Identities=18% Similarity=0.317 Sum_probs=31.1
Q ss_pred HHHHH---HhcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 037256 386 LIAGY---GMHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAGL 430 (680)
Q Consensus 386 li~~~---~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 430 (680)
+|+++ .+..+.+.|+-.+-+|++.| .|..+.=..++.+...-|.
T Consensus 17 ~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGl 63 (204)
T 2r9g_A 17 VISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGL 63 (204)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccC
Confidence 44444 35678999999999999999 7766665556666655553
No 323
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=22.01 E-value=5.1e+02 Score=24.69 Aligned_cols=130 Identities=11% Similarity=0.080 Sum_probs=70.4
Q ss_pred CchHHHHHHHHHHhC-C----CCCCcccHHHHH---HHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 037256 90 HCVETLELYSTMRRS-G----ISSNSYTFPFVL---KACASNSLILEGKVVHGDIIRTGFLSDSYVQAALVDMYAKCGQT 161 (680)
Q Consensus 90 ~~~~A~~~~~~m~~~-g----~~p~~~t~~~ll---~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~~~~~g~~ 161 (680)
.-++|..+|..+... + ..|+.......+ ..+.+..+ -+++..+.+.|+.|..++..-++..+.+.=.+
T Consensus 164 ~E~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~----p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~ 239 (331)
T 3qye_A 164 SEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYH----RDLYNHLEEHEIGPSLYAAPWFLTMFASQFPL 239 (331)
T ss_dssp CHHHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHHC----HHHHHHHHHTTCCGGGTSHHHHHSTTTTTSCH
T ss_pred hHHHHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHHH----HHHHHHHHHcCCChHHHHHHHHHHHhhhhCCH
Confidence 456788888877643 2 223332222111 11111111 35777788888888888888888888887788
Q ss_pred HHHHHHHhcCCC--CChhHHHH--HH----HHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHhccCC
Q 037256 162 DDGCKVFDEMSV--RDLVSWTV--MI----TAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVGQLGD 226 (680)
Q Consensus 162 ~~A~~~f~~~~~--~~~~~~~~--li----~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 226 (680)
+.+.+++|.+.. +....+-+ ++ ....+..++++.+.+++.... ..+......+++-......
T Consensus 240 ~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~~p---~~~~~di~~li~~A~~l~~ 309 (331)
T 3qye_A 240 GFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKSTLP---NLGLVQMEKTINQVFEMDI 309 (331)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHTTT---CCCHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCC---CCCHHHHHHHHHHHHhCCc
Confidence 888888886642 22222221 11 112233466666666655321 1233455555544444433
No 324
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=21.92 E-value=2.6e+02 Score=23.15 Aligned_cols=47 Identities=2% Similarity=-0.032 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHHhCCCccHHHHHHHHHHHcCCCCCHhHHHHHHHHHh
Q 037256 176 LVSWTVMITAYEQAEKPEEALILFQKTQQEGLLSDSVTIVSVASAVG 222 (680)
Q Consensus 176 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 222 (680)
...-..++..+...+.+-.|.++++.+.+.+...+..|.-..|..+.
T Consensus 26 T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~ 72 (150)
T 2xig_A 26 SKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLE 72 (150)
T ss_dssp HHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHH
Confidence 33344455555555566667777777766655555555444444443
No 325
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=21.89 E-value=29 Score=24.47 Aligned_cols=22 Identities=18% Similarity=0.440 Sum_probs=17.8
Q ss_pred ceEEEecCCccccccCccccCC
Q 037256 656 RKIIVRDANRFHHFEGGTCSCN 677 (680)
Q Consensus 656 ~~~~~~~~~~~h~~~~g~csc~ 677 (680)
..|-+.|....|+|+||+-+-.
T Consensus 8 k~v~LkDGstvyiFKDGKMamE 29 (74)
T 2k0q_A 8 KTYDLQDGSKVHVFKDGKMGME 29 (74)
T ss_dssp EEEEBTTSCEEEEETTSCEEEE
T ss_pred eeEecCCCcEEEEEcCCceehh
Confidence 4567889999999999986543
No 326
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=21.73 E-value=5.9e+02 Score=25.17 Aligned_cols=216 Identities=10% Similarity=0.022 Sum_probs=109.2
Q ss_pred HHHHHHhhhcchHHHHHHHHHHHHcCCC-----CchHHHHHHHHHHHHcCCHHHHHHHHhhcCCC----CCCHhHHHH--
Q 037256 317 ILVSACTYLGSRQLGRKFHGYIINSNMK-----IDATLRNAVMDMYAKCGDLDTAENMFNDIHPS----ERNVSSWNV-- 385 (680)
Q Consensus 317 ~ll~a~~~~g~~~~a~~i~~~~~~~~~~-----~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~----~~~~~~~~~-- 385 (680)
.+...+...|++.+|..++..+.+.=-. .-..++-.-+.+|...+++.++...+...... .+++..-..
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 3444555555555555555544432111 11234445566777777777777766554111 122222111
Q ss_pred --HHHHHH-hcCChHHHHHHHHHHHHc---CCCCC---HHHHHHHHHHHHccCCHHHHHHHHH-HhhhcCCCcChHHHHH
Q 037256 386 --LIAGYG-MHGHGRKALEFFSQMLEE---GVKPD---HITFTSILSACSHAGLIDEGRKCFA-DMTKLSVKPEVKHYAC 455 (680)
Q Consensus 386 --li~~~~-~~g~~~~A~~l~~~m~~~---g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~-~m~~~~~~p~~~~~~~ 455 (680)
-.-.+. ..+++.+|...|-+..+. -..|. ...|..| .+..... ..+-..++. .....-..|....+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL-~aLl~~~-r~el~~~l~~~~~~~~~~pei~~l~~ 261 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLL-CKIMLGQ-SDDVNQLVSGKLAITYSGRDIDAMKS 261 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-HHHHTTC-GGGHHHHHHSHHHHTTCSHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHH-HHHHcCC-HHHHHHHhccccccccCCccHHHHHH
Confidence 112344 678888888777665421 01121 1233222 2222222 222222221 1111112566666777
Q ss_pred HHHHHHhcCCHHHHHHHHHhC--CCCCCHhH---HHHHHHHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHhcCChhHH
Q 037256 456 MVDMLGRAGCLYEAFDMIKQM--PLPPNDSV---WGALLLACRIHGEIAANYLFQLEPEHTGYFVLMSNIYAASNKWREV 530 (680)
Q Consensus 456 li~~~~~~g~~~~A~~~~~~m--~~~p~~~~---~~~ll~a~~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A 530 (680)
++.+| +.+++.+..++++.. .+..|... |..|....+ +.+..++ ..|-.......++..+.- ..+++
T Consensus 262 L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir---~~~L~~i--~~pYsrIsl~~iA~~l~l--s~~ev 333 (394)
T 3txn_A 262 VAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTML---EQNLCRI--IEPYSRVQVAHVAESIQL--PMPQV 333 (394)
T ss_dssp HHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHH---HHHHHHH--HTTCSEEEHHHHHHHHTC--CHHHH
T ss_pred HHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH---HHHHHHH--hHhhceeeHHHHHHHHCc--CHHHH
Confidence 77765 567888777777765 24445543 222222222 2333333 356666667777776643 67899
Q ss_pred HHHHHHHHhCCC
Q 037256 531 GKLREDMKNKGL 542 (680)
Q Consensus 531 ~~~~~~m~~~g~ 542 (680)
+...-+|...|.
T Consensus 334 E~~L~~lI~dg~ 345 (394)
T 3txn_A 334 EKKLSQMILDKK 345 (394)
T ss_dssp HHHHHHHHHTTS
T ss_pred HHHHHHHHHCCC
Confidence 999999998775
No 327
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=21.53 E-value=1.6e+02 Score=21.40 Aligned_cols=40 Identities=13% Similarity=0.131 Sum_probs=27.7
Q ss_pred HHHhhhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHH
Q 037256 62 RSLFNSIHNDKSYSFLWNTMIRAYANNGHCVETLELYSTM 101 (680)
Q Consensus 62 ~~~f~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 101 (680)
..+++++|..-|++.+|+-+...+-+.--..++..+.+++
T Consensus 23 ~~LL~kIPnLPpgVnTW~qI~el~qkk~i~~~~m~iik~i 62 (81)
T 2ko4_A 23 KQLLQRIPNIPPNINTWQQVTALAQQKLLTPQDMEAAKEV 62 (81)
T ss_dssp HHHHTTSSSCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred HHHHhhCCCCCCCcchHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 5678888888778899988777665555555565555543
No 328
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=21.49 E-value=19 Score=19.13 Aligned_cols=14 Identities=36% Similarity=1.165 Sum_probs=9.4
Q ss_pred ccccCccc--cCCCCC
Q 037256 667 HHFEGGTC--SCNDYW 680 (680)
Q Consensus 667 h~~~~g~c--sc~~~~ 680 (680)
-+|.+|.| .|++-|
T Consensus 7 v~fgngfcgdncgnsw 22 (27)
T 2hgo_A 7 VNFGNGFCGDNCGNSW 22 (27)
T ss_dssp EEETTTEEECSSSCEE
T ss_pred EeecCccccCCcCCcc
Confidence 36777877 566655
No 329
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=21.08 E-value=4.6e+02 Score=25.26 Aligned_cols=60 Identities=8% Similarity=0.121 Sum_probs=35.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCCh---hHHHHHHHHHHHcC-ChhHHHHHHHHHHhCCCC
Q 037256 250 NSIVAMYARCGNVEKARLVFDMMEKRDL---ISWNSMLTGYIQNG-QASEALLLFDEMQNSDCK 309 (680)
Q Consensus 250 ~~Li~~y~~~g~~~~A~~~f~~m~~~~~---~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~ 309 (680)
..++.=|...|+.++|.+.++++..|.- +....+..++-+.. .-+.+..++..+.+.|+-
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~i 78 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHL 78 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCC
Confidence 5677788888899999988888876631 22222333332221 134456667777766543
No 330
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=21.02 E-value=4.3e+02 Score=23.24 Aligned_cols=38 Identities=18% Similarity=0.253 Sum_probs=28.5
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 037256 392 MHGHGRKALEFFSQMLEEGVKPDHITFTSILSACSHAG 429 (680)
Q Consensus 392 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~g 429 (680)
+..+.+.|+-.+-+|++.|..|..+.=..++.+...-|
T Consensus 19 RGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 19 RGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 56788999999999999888887766555555555544
No 331
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=20.13 E-value=2.6e+02 Score=24.57 Aligned_cols=21 Identities=14% Similarity=-0.102 Sum_probs=10.8
Q ss_pred HHHHHHhcCChHHHHHHHhcC
Q 037256 151 LVDMYAKCGQTDDGCKVFDEM 171 (680)
Q Consensus 151 Li~~~~~~g~~~~A~~~f~~~ 171 (680)
.+...++.|+.+-+..+++.-
T Consensus 45 ~L~~A~~~~~~~~v~~Ll~~~ 65 (240)
T 3eu9_A 45 LLHWAAINNRIDLVKYYISKG 65 (240)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHhCCHHHHHHHHHcC
Confidence 344445556655555555443
Done!