Query 037259
Match_columns 107
No_of_seqs 136 out of 976
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 10:24:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037259.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037259hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00018 AP2 DNA-binding domain 99.8 7.8E-20 1.7E-24 114.7 6.4 51 1-51 11-61 (61)
2 smart00380 AP2 DNA-binding dom 99.8 1.1E-19 2.3E-24 115.5 6.7 53 1-53 10-62 (64)
3 PHA00280 putative NHN endonucl 99.1 6.9E-11 1.5E-15 84.6 5.1 41 2-45 79-119 (121)
4 PF00847 AP2: AP2 domain; Int 98.8 8.5E-09 1.9E-13 62.8 5.3 41 2-42 13-56 (56)
5 PF14657 Integrase_AP2: AP2-li 90.0 1.5 3.2E-05 25.7 5.3 38 3-40 1-42 (46)
6 PF08846 DUF1816: Domain of un 74.0 8 0.00017 25.3 4.2 39 4-42 10-48 (68)
7 PF08471 Ribonuc_red_2_N: Clas 73.0 4.1 8.9E-05 28.2 2.8 21 19-39 70-90 (93)
8 cd00801 INT_P4 Bacteriophage P 68.7 12 0.00025 28.5 4.8 38 3-40 11-50 (357)
9 PF05036 SPOR: Sporulation rel 67.8 3.8 8.3E-05 24.7 1.6 25 12-36 41-65 (76)
10 PF14112 DUF4284: Domain of un 62.6 5.9 0.00013 27.9 1.9 17 15-31 2-18 (122)
11 PF09003 Phage_integ_N: Bacter 46.5 66 0.0014 21.3 4.8 22 8-31 31-52 (75)
12 PHA02601 int integrase; Provis 46.0 26 0.00056 27.0 3.3 37 2-39 9-46 (333)
13 cd08001 WGR_PARP1_like WGR dom 46.0 44 0.00094 22.5 4.0 35 17-51 57-93 (104)
14 COG0197 RplP Ribosomal protein 43.4 48 0.0011 24.6 4.2 36 4-42 96-131 (146)
15 PF07494 Reg_prop: Two compone 41.2 11 0.00023 19.2 0.3 11 13-23 14-24 (24)
16 PRK09692 integrase; Provisiona 40.9 67 0.0014 25.9 5.0 37 3-39 42-82 (413)
17 PF13356 DUF4102: Domain of un 39.9 66 0.0014 20.7 4.1 37 4-40 37-75 (89)
18 PF12286 DUF3622: Protein of u 39.7 79 0.0017 20.9 4.3 31 2-32 16-50 (71)
19 COG2185 Sbm Methylmalonyl-CoA 37.3 27 0.00059 25.8 2.0 16 16-31 43-58 (143)
20 PF12404 DUF3663: Peptidase ; 35.3 36 0.00078 22.8 2.2 37 1-42 14-50 (77)
21 PRK10927 essential cell divisi 33.7 77 0.0017 26.4 4.3 34 4-37 273-306 (319)
22 smart00703 NRF N-terminal doma 29.0 14 0.00031 25.0 -0.5 25 1-28 11-35 (110)
23 cd07997 WGR_PARP WGR domain of 28.0 1.4E+02 0.003 20.0 4.2 43 6-51 47-91 (102)
24 PF14032 PknH_C: PknH-like ext 27.7 53 0.0011 23.5 2.2 24 18-41 86-109 (189)
25 CHL00044 rpl16 ribosomal prote 27.5 1.3E+02 0.0028 21.7 4.2 35 4-41 93-127 (135)
26 smart00773 WGR Proposed nuclei 26.2 1.6E+02 0.0035 18.7 4.1 21 21-41 54-74 (84)
27 TIGR01164 rplP_bact ribosomal 25.6 1.8E+02 0.004 20.6 4.6 32 4-39 92-124 (126)
28 cd03070 PDI_b_ERp44 PDIb famil 25.3 41 0.00088 22.8 1.2 29 12-40 14-43 (91)
29 PRK09203 rplP 50S ribosomal pr 24.2 1.8E+02 0.0038 21.0 4.4 34 4-41 93-127 (138)
30 PF14882 GHL12: Hypothetical g 24.1 53 0.0012 20.1 1.4 10 22-31 40-49 (53)
31 PRK07562 ribonucleotide-diphos 23.7 89 0.0019 30.5 3.4 30 20-49 125-154 (1220)
32 PF11453 DUF2950: Protein of u 23.1 77 0.0017 25.8 2.6 17 21-37 3-19 (271)
33 COG3087 FtsN Cell division pro 22.1 1.5E+02 0.0032 24.1 4.0 29 6-34 218-248 (264)
34 PF13773 DUF4170: Domain of un 21.8 99 0.0021 20.4 2.4 23 17-39 27-49 (69)
35 PF09954 DUF2188: Uncharacteri 21.2 2E+02 0.0044 17.3 3.7 33 2-38 9-41 (62)
36 PRK12757 cell division protein 20.9 1.9E+02 0.0041 23.3 4.3 32 5-36 211-242 (256)
37 cd07996 WGR_MMR_like WGR domai 20.7 1.1E+02 0.0025 18.8 2.5 19 22-40 49-67 (74)
38 PF08178 GnsAB: GnsA/GnsB fami 20.4 34 0.00074 21.5 0.0 10 2-11 30-39 (54)
No 1
>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.
Probab=99.81 E-value=7.8e-20 Score=114.70 Aligned_cols=51 Identities=51% Similarity=0.782 Sum_probs=48.4
Q ss_pred CCceEEEEeCCCCCeEEeecCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 037259 1 MGKWASEIVDPKKGVRVCLGTFDIVEEVARSYAEAAKRNRYNMAKLDFADL 51 (107)
Q Consensus 1 wGKW~AeIr~~~~~kr~~LGtFdT~eEAA~AYD~aA~~~~G~~a~~NFp~~ 51 (107)
||||+|+|+++..|+++|||+|+|+|||++|||.++++++|.++.+|||.+
T Consensus 11 ~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~ 61 (61)
T cd00018 11 WGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS 61 (61)
T ss_pred CCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence 699999999766699999999999999999999999999999999999975
No 2
>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs.
Probab=99.80 E-value=1.1e-19 Score=115.46 Aligned_cols=53 Identities=53% Similarity=0.808 Sum_probs=50.5
Q ss_pred CCceEEEEeCCCCCeEEeecCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCCCC
Q 037259 1 MGKWASEIVDPKKGVRVCLGTFDIVEEVARSYAEAAKRNRYNMAKLDFADLLL 53 (107)
Q Consensus 1 wGKW~AeIr~~~~~kr~~LGtFdT~eEAA~AYD~aA~~~~G~~a~~NFp~~~~ 53 (107)
||||+|+|++|.+++++|||+|+|+||||.|||.++++++|+++.+|||.+.+
T Consensus 10 ~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y 62 (64)
T smart00380 10 WGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLY 62 (64)
T ss_pred CCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccC
Confidence 79999999988899999999999999999999999999999999999998754
No 3
>PHA00280 putative NHN endonuclease
Probab=99.14 E-value=6.9e-11 Score=84.64 Aligned_cols=41 Identities=20% Similarity=0.345 Sum_probs=38.6
Q ss_pred CceEEEEeCCCCCeEEeecCCCCHHHHHHHHHHHHHHhcCCCCC
Q 037259 2 GKWASEIVDPKKGVRVCLGTFDIVEEVARSYAEAAKRNRYNMAK 45 (107)
Q Consensus 2 GKW~AeIr~~~~~kr~~LGtFdT~eEAA~AYD~aA~~~~G~~a~ 45 (107)
|||+|+|+ .+||+++||.|+|+|+|+.||+ ++.++||+|+.
T Consensus 79 ~kw~A~I~--~~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~ 119 (121)
T PHA00280 79 EMWRGTVT--AEGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR 119 (121)
T ss_pred CeEEEEEE--ECCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence 79999999 8999999999999999999997 78899999885
No 4
>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes. Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.
Probab=98.83 E-value=8.5e-09 Score=62.84 Aligned_cols=41 Identities=29% Similarity=0.413 Sum_probs=36.1
Q ss_pred CceEEEEeCCC-C--CeEEeecCCCCHHHHHHHHHHHHHHhcCC
Q 037259 2 GKWASEIVDPK-K--GVRVCLGTFDIVEEVARSYAEAAKRNRYN 42 (107)
Q Consensus 2 GKW~AeIr~~~-~--~kr~~LGtFdT~eEAA~AYD~aA~~~~G~ 42 (107)
++|+|.|+++. + +++++||.|++++||+++|+.++++++|+
T Consensus 13 ~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e 56 (56)
T PF00847_consen 13 GRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE 56 (56)
T ss_dssp TEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred CEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence 78999999742 2 49999999999999999999999999875
No 5
>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain
Probab=90.00 E-value=1.5 Score=25.69 Aligned_cols=38 Identities=16% Similarity=0.282 Sum_probs=29.5
Q ss_pred ceEEEE--eCCCCC--eEEeecCCCCHHHHHHHHHHHHHHhc
Q 037259 3 KWASEI--VDPKKG--VRVCLGTFDIVEEVARSYAEAAKRNR 40 (107)
Q Consensus 3 KW~AeI--r~~~~~--kr~~LGtFdT~eEAA~AYD~aA~~~~ 40 (107)
+|...| .++.+| ++++-+-|.|..||-.+...+-..+.
T Consensus 1 ~w~~~v~g~~~~~Gkrk~~~k~GF~TkkeA~~~~~~~~~~~~ 42 (46)
T PF14657_consen 1 TWYYRVYGYDDETGKRKQKTKRGFKTKKEAEKALAKIEAELE 42 (46)
T ss_pred CEEEEEEEEECCCCCEEEEEcCCCCcHHHHHHHHHHHHHHHH
Confidence 688888 366566 66677999999999999887766553
No 6
>PF08846 DUF1816: Domain of unknown function (DUF1816); InterPro: IPR014945 Q4C9H3 from SWISSPROT is associated with the IPR008213 from INTERPRO domain suggesting this protein could have a role in phycobilisomes.
Probab=74.05 E-value=8 Score=25.29 Aligned_cols=39 Identities=21% Similarity=0.276 Sum_probs=29.2
Q ss_pred eEEEEeCCCCCeEEeecCCCCHHHHHHHHHHHHHHhcCC
Q 037259 4 WASEIVDPKKGVRVCLGTFDIVEEVARSYAEAAKRNRYN 42 (107)
Q Consensus 4 W~AeIr~~~~~kr~~LGtFdT~eEAA~AYD~aA~~~~G~ 42 (107)
|=++|.--.=....|.|-|+|.+||..+......-+..+
T Consensus 10 WWveI~T~~P~ctYyFGPF~s~~eA~~~~~gyieDL~~E 48 (68)
T PF08846_consen 10 WWVEIETQNPNCTYYFGPFDSREEAEAALPGYIEDLESE 48 (68)
T ss_pred EEEEEEcCCCCEEEEeCCcCCHHHHHHHhccHHHHHHhh
Confidence 668888544468899999999999999876555544433
No 7
>PF08471 Ribonuc_red_2_N: Class II vitamin B12-dependent ribonucleotide reductase; InterPro: IPR013678 This domain is found to the N terminus of the ribonucleotide reductase barrel domain (IPR000788 from INTERPRO). It occurs in bacterial class II ribonucleotide reductase proteins which depend upon coenzyme B12 (deoxyadenosylcobalamine) []. ; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0050897 cobalt ion binding, 0055114 oxidation-reduction process
Probab=73.04 E-value=4.1 Score=28.25 Aligned_cols=21 Identities=24% Similarity=0.180 Sum_probs=18.3
Q ss_pred ecCCCCHHHHHHHHHHHHHHh
Q 037259 19 LGTFDIVEEVARSYAEAAKRN 39 (107)
Q Consensus 19 LGtFdT~eEAA~AYD~aA~~~ 39 (107)
-|.|+|+|+|..-||+....|
T Consensus 70 ~GYF~t~eDA~~FydEl~~mL 90 (93)
T PF08471_consen 70 GGYFATEEDAEAFYDELTYML 90 (93)
T ss_pred CCCcCCHHHHHHHHHHHHHHH
Confidence 499999999999999987654
No 8
>cd00801 INT_P4 Bacteriophage P4 integrase. P4-like integrases are found in temperate bacteriophages, integrative plasmids, pathogenicity and symbiosis islands, and other mobile genetic elements. They share the same fold in their catalytic domain and the overall reaction mechanism with the superfamily of DNA breaking-rejoining enzymes. The P4 integrase mediates integrative and excisive site-specific recombination between two sites, called attachment sites, located on the phage genome and the bacterial chromosome. The phage attachment site is often found adjacent to the integrase gene, while the host attachment sites are typically situated near tRNA genes.
Probab=68.69 E-value=12 Score=28.52 Aligned_cols=38 Identities=21% Similarity=0.239 Sum_probs=28.1
Q ss_pred ceEEEEeCCCCCeEEeecCCC--CHHHHHHHHHHHHHHhc
Q 037259 3 KWASEIVDPKKGVRVCLGTFD--IVEEVARSYAEAAKRNR 40 (107)
Q Consensus 3 KW~AeIr~~~~~kr~~LGtFd--T~eEAA~AYD~aA~~~~ 40 (107)
.|..+++.....+++.||+|+ |.++|....+.....+.
T Consensus 11 ~~~~~~~~~g~~~~~~~g~~~~~~~~~A~~~~~~~~~~~~ 50 (357)
T cd00801 11 SWRFRYRLAGKRKRLTLGSYPAVSLAEAREKADEARALLA 50 (357)
T ss_pred EEEEEeccCCceeEEeCcCCCCCCHHHHHHHHHHHHHHHH
Confidence 589999965556678899996 67777777766655554
No 9
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=67.77 E-value=3.8 Score=24.70 Aligned_cols=25 Identities=24% Similarity=0.243 Sum_probs=19.9
Q ss_pred CCCeEEeecCCCCHHHHHHHHHHHH
Q 037259 12 KKGVRVCLGTFDIVEEVARSYAEAA 36 (107)
Q Consensus 12 ~~~kr~~LGtFdT~eEAA~AYD~aA 36 (107)
...-||.+|.|+|.+||..+-....
T Consensus 41 ~~~yrV~~G~f~~~~~A~~~~~~l~ 65 (76)
T PF05036_consen 41 GPWYRVRVGPFSSREEAEAALRKLK 65 (76)
T ss_dssp TTCEEEEECCECTCCHHHHHHHHHH
T ss_pred CceEEEEECCCCCHHHHHHHHHHHh
Confidence 4567899999999999988876544
No 10
>PF14112 DUF4284: Domain of unknown function (DUF4284)
Probab=62.63 E-value=5.9 Score=27.89 Aligned_cols=17 Identities=24% Similarity=0.503 Sum_probs=13.2
Q ss_pred eEEeecCCCCHHHHHHH
Q 037259 15 VRVCLGTFDIVEEVARS 31 (107)
Q Consensus 15 kr~~LGtFdT~eEAA~A 31 (107)
..||||+|.|.+|=..=
T Consensus 2 VsiWiG~f~s~~el~~Y 18 (122)
T PF14112_consen 2 VSIWIGNFKSEDELEEY 18 (122)
T ss_pred eEEEEecCCCHHHHHHH
Confidence 46999999998775543
No 11
>PF09003 Phage_integ_N: Bacteriophage lambda integrase, N-terminal domain ; InterPro: IPR015094 The amino terminal domain of bacteriophage lambda integrase folds into a three-stranded, antiparallel beta-sheet that packs against a C-terminal alpha-helix, adopting a fold that is structurally related to the three-stranded beta-sheet family of DNA-binding domains (which includes the GCC-box DNA-binding domain and the N-terminal domain of Tn916 integrase). This domain is responsible for high-affinity binding to each of the five DNA arm-type sites and is also a context-sensitive modulator of DNA cleavage []. ; GO: 0003677 DNA binding, 0008907 integrase activity, 0015074 DNA integration; PDB: 1Z1G_B 1Z1B_A 2WCC_3 1KJK_A.
Probab=46.49 E-value=66 Score=21.31 Aligned_cols=22 Identities=27% Similarity=0.247 Sum_probs=14.7
Q ss_pred EeCCCCCeEEeecCCCCHHHHHHH
Q 037259 8 IVDPKKGVRVCLGTFDIVEEVARS 31 (107)
Q Consensus 8 Ir~~~~~kr~~LGtFdT~eEAA~A 31 (107)
-|+|.+|+.+.||+ +.+||...
T Consensus 31 Yr~P~tGk~~~LG~--d~~~Ai~~ 52 (75)
T PF09003_consen 31 YRNPITGKEHGLGT--DRAEAIAQ 52 (75)
T ss_dssp EE-TTTS-EEEEES---HHHHHHH
T ss_pred EecCCCCceeeCCC--CHHHHHHH
Confidence 46899999999999 66665544
No 12
>PHA02601 int integrase; Provisional
Probab=46.01 E-value=26 Score=27.03 Aligned_cols=37 Identities=24% Similarity=0.301 Sum_probs=25.6
Q ss_pred CceEEEEeC-CCCCeEEeecCCCCHHHHHHHHHHHHHHh
Q 037259 2 GKWASEIVD-PKKGVRVCLGTFDIVEEVARSYAEAAKRN 39 (107)
Q Consensus 2 GKW~AeIr~-~~~~kr~~LGtFdT~eEAA~AYD~aA~~~ 39 (107)
|+|..+|+. ...|+|+.. +|.|..||-...+.....+
T Consensus 9 g~w~~~~~~~~~~g~r~~~-~f~tk~eA~~~~~~~~~~~ 46 (333)
T PHA02601 9 GKWLCEIYPNGRDGKRIRK-RFATKGEALAFENYTMAEV 46 (333)
T ss_pred CCEEEEEEECCCCCchhhh-hhcCHHHHHHHHHHHHHhc
Confidence 789999984 235777654 6999998876655544444
No 13
>cd08001 WGR_PARP1_like WGR domain of poly(ADP-ribose) polymerase 1 and similar proteins. The WGR domain is found in a variety of eukaryotic poly(ADP-ribose) polymerases (PARPs). It has been called WGR after the most conserved central motif of the domain. The domain typically occurs together with a catalytic PARP domain, and is between 70 and 80 residues in length. It has been proposed to function as a nucleic acid binding domain. PARPs catalyze the NAD(+)-dependent synthesis of ADP-ribose polymers and their addition to various nuclear proteins. Higher eukaryotes contain several PARPs and and there may be up to 17 human PARP-like proteins, with three of them (PARP-1, PARP-2, and PARP-3) containing a WGR domain. The synthesis of poly-ADP-ribose requires multiple enzymatic activities for initiation, trans-ADP-ribosylation, elongation, branching, and release of the polymer from the enzyme. This subfamily is composed of vertebrate PARP-1 and similar proteins, including Arabidopsis thaliana
Probab=46.00 E-value=44 Score=22.53 Aligned_cols=35 Identities=20% Similarity=0.228 Sum_probs=25.9
Q ss_pred EeecCCCCHHHHHHHHHHHHHHhcCCC--CCCCCCCC
Q 037259 17 VCLGTFDIVEEVARSYAEAAKRNRYNM--AKLDFADL 51 (107)
Q Consensus 17 ~~LGtFdT~eEAA~AYD~aA~~~~G~~--a~~NFp~~ 51 (107)
.-+-.|.+.++|..++++..+...|.. -+.+|+..
T Consensus 57 ~~~~~~~~~~~A~~~F~k~f~~KTgn~w~~r~~f~k~ 93 (104)
T cd08001 57 NKLEEFSSLEEAKMAFEELYEEKTGNDFENRKNFKKK 93 (104)
T ss_pred eEccCCCCHHHHHHHHHHHHHHHhCCCCccccCCccc
Confidence 335679999999999999888877742 35566554
No 14
>COG0197 RplP Ribosomal protein L16/L10E [Translation, ribosomal structure and biogenesis]
Probab=43.41 E-value=48 Score=24.62 Aligned_cols=36 Identities=17% Similarity=0.074 Sum_probs=30.0
Q ss_pred eEEEEeCCCCCeEEeecCCCCHHHHHHHHHHHHHHhcCC
Q 037259 4 WASEIVDPKKGVRVCLGTFDIVEEVARSYAEAAKRNRYN 42 (107)
Q Consensus 4 W~AeIr~~~~~kr~~LGtFdT~eEAA~AYD~aA~~~~G~ 42 (107)
|+|+|. -|+-++-=..++++.|..|.-.|+.+|-..
T Consensus 96 waArVk---pG~vlfei~g~~e~~A~EAlr~Aa~KLP~~ 131 (146)
T COG0197 96 WAARVK---PGRVLFEIAGVPEELAREALRRAAAKLPVK 131 (146)
T ss_pred EEEEec---CCcEEEEEecCcHHHHHHHHHHHhhcCCCc
Confidence 999998 477777767788888999999999888665
No 15
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=41.18 E-value=11 Score=19.24 Aligned_cols=11 Identities=18% Similarity=0.522 Sum_probs=8.6
Q ss_pred CCeEEeecCCC
Q 037259 13 KGVRVCLGTFD 23 (107)
Q Consensus 13 ~~kr~~LGtFd 23 (107)
..-++|+||++
T Consensus 14 ~~G~lWigT~~ 24 (24)
T PF07494_consen 14 SDGNLWIGTYN 24 (24)
T ss_dssp TTSCEEEEETS
T ss_pred CCcCEEEEeCC
Confidence 45689999974
No 16
>PRK09692 integrase; Provisional
Probab=40.92 E-value=67 Score=25.91 Aligned_cols=37 Identities=16% Similarity=0.267 Sum_probs=24.4
Q ss_pred ceEEEEeCCCCCeE--EeecCCC--CHHHHHHHHHHHHHHh
Q 037259 3 KWASEIVDPKKGVR--VCLGTFD--IVEEVARSYAEAAKRN 39 (107)
Q Consensus 3 KW~AeIr~~~~~kr--~~LGtFd--T~eEAA~AYD~aA~~~ 39 (107)
.|..+.+.+.+|++ +-||.|+ |..||..+-.++...+
T Consensus 42 ~~~~rY~~~~~gk~~~~~lG~yp~~sl~~AR~~a~~~~~~~ 82 (413)
T PRK09692 42 IWQFRYYRPLTKTRAKKSFGPYPSVTLADARNYRAESRSLL 82 (413)
T ss_pred EEEEEEecCCCCceeeeeCCCCCCCCHHHHHHHHHHHHHHH
Confidence 48888876545554 6799999 6777766554444433
No 17
>PF13356 DUF4102: Domain of unknown function (DUF4102); PDB: 3JU0_A 3RMP_A 3JTZ_A 2KJ8_A.
Probab=39.89 E-value=66 Score=20.71 Aligned_cols=37 Identities=19% Similarity=0.132 Sum_probs=24.1
Q ss_pred eEEEEeCCCCCeEEeecCCCC--HHHHHHHHHHHHHHhc
Q 037259 4 WASEIVDPKKGVRVCLGTFDI--VEEVARSYAEAAKRNR 40 (107)
Q Consensus 4 W~AeIr~~~~~kr~~LGtFdT--~eEAA~AYD~aA~~~~ 40 (107)
|.-+.+.....+++-||.|++ ..||..........+.
T Consensus 37 ~~~r~~~~gk~~~~~lG~~p~~sl~~AR~~a~~~~~~~~ 75 (89)
T PF13356_consen 37 FYFRYRINGKRRRITLGRYPELSLAEAREKARELRALVR 75 (89)
T ss_dssp EEEEEEETTEEEEEEEEECTTS-HHHHHHHHHHHHHHHC
T ss_pred EEEEEEecceEEEeccCCCccCCHHHHHHHHHHHHHHHH
Confidence 777776434456788999986 6666666555544443
No 18
>PF12286 DUF3622: Protein of unknown function (DUF3622); InterPro: IPR022069 This family of proteins is found in bacteria. Proteins in this family are typically between 72 and 107 amino acids in length. There is a conserved VSK sequence motif.
Probab=39.65 E-value=79 Score=20.93 Aligned_cols=31 Identities=16% Similarity=0.222 Sum_probs=21.4
Q ss_pred CceEEEEeCCCCCeEEee----cCCCCHHHHHHHH
Q 037259 2 GKWASEIVDPKKGVRVCL----GTFDIVEEVARSY 32 (107)
Q Consensus 2 GKW~AeIr~~~~~kr~~L----GtFdT~eEAA~AY 32 (107)
+-|.|+|......++.-+ --|+|++||-.-=
T Consensus 16 ~~W~aEItR~vTsrkTvVSK~~~GF~SEaeAq~W~ 50 (71)
T PF12286_consen 16 NGWTAEITRRVTSRKTVVSKRQDGFASEAEAQAWG 50 (71)
T ss_pred CceeeeeeeeecCceeEEEecccCcccHHHHHHHH
Confidence 469999986555544433 4699999976543
No 19
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=37.25 E-value=27 Score=25.79 Aligned_cols=16 Identities=38% Similarity=0.569 Sum_probs=14.2
Q ss_pred EEeecCCCCHHHHHHH
Q 037259 16 RVCLGTFDIVEEVARS 31 (107)
Q Consensus 16 r~~LGtFdT~eEAA~A 31 (107)
=+++|.|.|+||++++
T Consensus 43 Vi~~g~~~tp~e~v~a 58 (143)
T COG2185 43 VINLGLFQTPEEAVRA 58 (143)
T ss_pred EEecCCcCCHHHHHHH
Confidence 4689999999999887
No 20
>PF12404 DUF3663: Peptidase ; InterPro: IPR008330 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family represents the peptidase B group of leucyl aminopeptidases, which are restricted to the gammaproteobacteria. They contain a C-terminal aminopeptidase catalytic domain and an N-terminal domain of unknown function. They are zinc-dependent exopeptidases (3.4.11.1 from EC) and belong to MEROPS peptidase family M17 (leucyl aminopeptidase family, clan MF). They selectively release N-terminal amino acid residues from polypeptides and proteins and are involved in the processing, catabolism and degradation of intracellular proteins [, , ]. Leucyl aminopeptidase forms a homohexamer containing two trimers stacked on top of one another []. Each monomer binds two zinc ions. The zinc-binding and catalytic sites are located within the C-terminal catalytic domain []. The same catalytic aminopeptidase domain is found in the other M17 peptidases IPR011356 from INTERPRO. These two groups of aminopeptidases differ by their N-terminal domains. The N-terminal domain in members of IPR011356 from INTERPRO has been implicated in DNA binding [, ] and it is not associated with members of this family which have a different N-terminal domain and therefore are not expected to bind DNA or be involved in transcriptional regulation. In addition, there are related proteins with the same catalytic domain and unique N-terminal sequences unrelated to any of the two N-terminal domains discussed above. For additional information please see [, , , ]. ; GO: 0004177 aminopeptidase activity, 0008235 metalloexopeptidase activity, 0030145 manganese ion binding, 0005737 cytoplasm
Probab=35.33 E-value=36 Score=22.77 Aligned_cols=37 Identities=16% Similarity=0.174 Sum_probs=26.0
Q ss_pred CCceEEEEeCCCCCeEEeecCCCCHHHHHHHHHHHHHHhcCC
Q 037259 1 MGKWASEIVDPKKGVRVCLGTFDIVEEVARSYAEAAKRNRYN 42 (107)
Q Consensus 1 wGKW~AeIr~~~~~kr~~LGtFdT~eEAA~AYD~aA~~~~G~ 42 (107)
||+ .|-|.-..+|..|+| +..+.-+.-.+||+++.+-
T Consensus 14 WG~-~AllSf~~~ga~IHl----~~~~~l~~IQrAaRkLd~q 50 (77)
T PF12404_consen 14 WGE-KALLSFNEQGATIHL----SEGDDLRAIQRAARKLDGQ 50 (77)
T ss_pred hCc-CcEEEEcCCCEEEEE----CCCcchHHHHHHHHHHhhC
Confidence 553 355554467999999 4455577888889988864
No 21
>PRK10927 essential cell division protein FtsN; Provisional
Probab=33.66 E-value=77 Score=26.42 Aligned_cols=34 Identities=18% Similarity=0.178 Sum_probs=26.2
Q ss_pred eEEEEeCCCCCeEEeecCCCCHHHHHHHHHHHHH
Q 037259 4 WASEIVDPKKGVRVCLGTFDIVEEVARSYAEAAK 37 (107)
Q Consensus 4 W~AeIr~~~~~kr~~LGtFdT~eEAA~AYD~aA~ 37 (107)
+.|.|.....-.||.||-|.+.++|-++.++...
T Consensus 273 ~~A~I~~~g~~~RVrVGPf~sr~eAe~a~~rLk~ 306 (319)
T PRK10927 273 FDSKITTNNGWNRVVIGPVKGKENADSTLNRLKM 306 (319)
T ss_pred CeeEEccCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4567764445689999999999999999876543
No 22
>smart00703 NRF N-terminal domain in C. elegans NRF-6 (Nose Resistant to Fluoxetine-4) and NDG-4 (resistant to nordihydroguaiaretic acid-4). Also present in several other worm and fly proteins.
Probab=28.95 E-value=14 Score=25.00 Aligned_cols=25 Identities=24% Similarity=0.578 Sum_probs=18.5
Q ss_pred CCceEEEEeCCCCCeEEeecCCCCHHHH
Q 037259 1 MGKWASEIVDPKKGVRVCLGTFDIVEEV 28 (107)
Q Consensus 1 wGKW~AeIr~~~~~kr~~LGtFdT~eEA 28 (107)
|||+-+-|- .|..+|||.||.=.+.
T Consensus 11 ~Gk~psGll---~Gn~~~lG~ydeC~~i 35 (110)
T smart00703 11 WGKFPSGLL---EGNNLWLGSYEECLRI 35 (110)
T ss_pred cCCCCCeEE---EeecCcccCHHHHhhh
Confidence 777766665 6788999999875443
No 23
>cd07997 WGR_PARP WGR domain of poly(ADP-ribose) polymerases. The WGR domain is found in a variety of eukaryotic poly(ADP-ribose) polymerases (PARPs). It has been called WGR after the most conserved central motif of the domain. The domain typically occurs together with a catalytic PARP domain, and is between 70 and 80 residues in length. It has been proposed to function as a nucleic acid binding domain. PARPs catalyze the NAD(+)-dependent synthesis of ADP-ribose polymers and their addition to various nuclear proteins and histones. Higher eukaryotes contain several PARPs and there may be up to 17 human PARP-like proteins, with three of them (PARP-1, PARP-2, and PARP-3) containing a WGR domain. The synthesis of poly-ADP-ribose requires multiple enzymatic activities for initiation, trans-ADP-ribosylation, elongation, branching, and release of the polymer from the enzyme. Poly-ADP-ribosylation was thought to be a reversible post-translational covalent modification that serves as a regulator
Probab=27.95 E-value=1.4e+02 Score=19.98 Aligned_cols=43 Identities=16% Similarity=0.250 Sum_probs=26.6
Q ss_pred EEEeCCCCCeEEeecCCCCHHHHHHHHHHHHHHhcCCC--CCCCCCCC
Q 037259 6 SEIVDPKKGVRVCLGTFDIVEEVARSYAEAAKRNRYNM--AKLDFADL 51 (107)
Q Consensus 6 AeIr~~~~~kr~~LGtFdT~eEAA~AYD~aA~~~~G~~--a~~NFp~~ 51 (107)
.+|.. .|... |=.|.+.++|..++.+.-..--|.. -+.+|+..
T Consensus 47 GRVG~--~Gq~~-~~~~~~~~~A~~~F~k~f~~Kt~~~w~~r~~f~k~ 91 (102)
T cd07997 47 GRVGE--RGQSQ-LTPFGSLESAIKEFEKKFKDKTGNEWENRPLFKKQ 91 (102)
T ss_pred ccCCC--cCcee-ecCCCCHHHHHHHHHHHHHHHHCCccccccccccC
Confidence 34553 34443 3348889999999987766665533 23566654
No 24
>PF14032 PknH_C: PknH-like extracellular domain
Probab=27.67 E-value=53 Score=23.47 Aligned_cols=24 Identities=17% Similarity=0.142 Sum_probs=21.0
Q ss_pred eecCCCCHHHHHHHHHHHHHHhcC
Q 037259 18 CLGTFDIVEEVARSYAEAAKRNRY 41 (107)
Q Consensus 18 ~LGtFdT~eEAA~AYD~aA~~~~G 41 (107)
-++.|+++++|.++|+..+...+.
T Consensus 86 aV~~fp~~~~A~~~f~~~~~~w~~ 109 (189)
T PF14032_consen 86 AVVVFPSAAAAQAFFARLADQWRA 109 (189)
T ss_pred EEEEeCCHHHHHHHHHHHHHHHHh
Confidence 358999999999999998888775
No 25
>CHL00044 rpl16 ribosomal protein L16
Probab=27.45 E-value=1.3e+02 Score=21.68 Aligned_cols=35 Identities=11% Similarity=-0.058 Sum_probs=24.8
Q ss_pred eEEEEeCCCCCeEEeecCCCCHHHHHHHHHHHHHHhcC
Q 037259 4 WASEIVDPKKGVRVCLGTFDIVEEVARSYAEAAKRNRY 41 (107)
Q Consensus 4 W~AeIr~~~~~kr~~LGtFdT~eEAA~AYD~aA~~~~G 41 (107)
|++.|+ .|+-|+=-.-.+++.|..|...++.+|-.
T Consensus 93 ~va~V~---~G~ilfEi~g~~~~~ak~al~~a~~KLP~ 127 (135)
T CHL00044 93 WVAVVK---PGRILYEMGGVSETIARAAIKIAAYKMPI 127 (135)
T ss_pred EEEEEC---CCcEEEEEeCCCHHHHHHHHHHHhhcCCC
Confidence 999999 45555433336678899998888877654
No 26
>smart00773 WGR Proposed nucleic acid binding domain. This domain is named after its most conserved central motif. It is found in a variety of polyA polymerases as well as in molybdate metabolism regulators (e.g. in E.coli) and other proteins of unknown function. The domain is found in isolation in some proteins and is between 70 and 80 residues in length. It is proposed that it may be a nucleic acid binding domain.
Probab=26.19 E-value=1.6e+02 Score=18.72 Aligned_cols=21 Identities=24% Similarity=0.439 Sum_probs=16.9
Q ss_pred CCCCHHHHHHHHHHHHHHhcC
Q 037259 21 TFDIVEEVARSYAEAAKRNRY 41 (107)
Q Consensus 21 tFdT~eEAA~AYD~aA~~~~G 41 (107)
.|++.++|..++++....-.+
T Consensus 54 ~~~s~~~A~~~f~k~~~~Kt~ 74 (84)
T smart00773 54 TFDSLEDAIKEFEKLFKEKTK 74 (84)
T ss_pred cCCCHHHHHHHHHHHHHHHhc
Confidence 689999999999887765543
No 27
>TIGR01164 rplP_bact ribosomal protein L16, bacterial/organelle. This model describes bacterial and organellar ribosomal protein L16. The homologous protein of the eukaryotic cytosol is designated L10
Probab=25.58 E-value=1.8e+02 Score=20.59 Aligned_cols=32 Identities=16% Similarity=0.204 Sum_probs=24.6
Q ss_pred eEEEEeCCCCCeEE-eecCCCCHHHHHHHHHHHHHHh
Q 037259 4 WASEIVDPKKGVRV-CLGTFDIVEEVARSYAEAAKRN 39 (107)
Q Consensus 4 W~AeIr~~~~~kr~-~LGtFdT~eEAA~AYD~aA~~~ 39 (107)
|++.|+ .|+-| -++. .+++.|-.|.-.++.++
T Consensus 92 ~varV~---~G~ilfEi~~-~~~~~a~~al~~a~~KL 124 (126)
T TIGR01164 92 WVAVVK---PGKILFEIAG-VPEEVAREAFRLAASKL 124 (126)
T ss_pred EEEEEC---CCCEEEEEeC-CCHHHHHHHHHHHHhcC
Confidence 999999 45544 4444 89999999998888765
No 28
>cd03070 PDI_b_ERp44 PDIb family, ERp44 subfamily, first redox inactive TRX-like domain b; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b domain of ERp44 is likely involved in binding to substrates.
Probab=25.32 E-value=41 Score=22.83 Aligned_cols=29 Identities=17% Similarity=0.314 Sum_probs=24.7
Q ss_pred CCCeEEeecCCCCHH-HHHHHHHHHHHHhc
Q 037259 12 KKGVRVCLGTFDIVE-EVARSYAEAAKRNR 40 (107)
Q Consensus 12 ~~~kr~~LGtFdT~e-EAA~AYD~aA~~~~ 40 (107)
..+||.-+|.|++.+ .....|.++|..++
T Consensus 14 d~~kr~iIgYF~~~~~~eY~~f~kvA~~lr 43 (91)
T cd03070 14 DRSKRNIIGYFESKDSDEYDNFRKVANILR 43 (91)
T ss_pred CcCCceEEEEEcCCCChhHHHHHHHHHHHh
Confidence 358999999998866 77889999999888
No 29
>PRK09203 rplP 50S ribosomal protein L16; Reviewed
Probab=24.20 E-value=1.8e+02 Score=21.01 Aligned_cols=34 Identities=15% Similarity=0.118 Sum_probs=26.0
Q ss_pred eEEEEeCCCCCeEE-eecCCCCHHHHHHHHHHHHHHhcC
Q 037259 4 WASEIVDPKKGVRV-CLGTFDIVEEVARSYAEAAKRNRY 41 (107)
Q Consensus 4 W~AeIr~~~~~kr~-~LGtFdT~eEAA~AYD~aA~~~~G 41 (107)
|++.|. .|+-| -++. .+++.|..|...|+.++-+
T Consensus 93 ~varVk---~G~iifEi~~-~~~~~a~~al~~a~~KLP~ 127 (138)
T PRK09203 93 WVAVVK---PGRILFEIAG-VSEELAREALRLAAAKLPI 127 (138)
T ss_pred EEEEEC---CCCEEEEEeC-CCHHHHHHHHHHHhccCCC
Confidence 999999 45544 4444 8899999999988877654
No 30
>PF14882 GHL12: Hypothetical glycosyl hydrolase 12
Probab=24.08 E-value=53 Score=20.10 Aligned_cols=10 Identities=20% Similarity=0.498 Sum_probs=8.7
Q ss_pred CCCHHHHHHH
Q 037259 22 FDIVEEVARS 31 (107)
Q Consensus 22 FdT~eEAA~A 31 (107)
|.|.+||..|
T Consensus 40 Y~t~~eA~~A 49 (53)
T PF14882_consen 40 YPTYEEASKA 49 (53)
T ss_pred cCCHHHHHHH
Confidence 7899999876
No 31
>PRK07562 ribonucleotide-diphosphate reductase subunit alpha; Validated
Probab=23.67 E-value=89 Score=30.46 Aligned_cols=30 Identities=23% Similarity=0.193 Sum_probs=23.2
Q ss_pred cCCCCHHHHHHHHHHHHHHhcCCCCCCCCC
Q 037259 20 GTFDIVEEVARSYAEAAKRNRYNMAKLDFA 49 (107)
Q Consensus 20 GtFdT~eEAA~AYD~aA~~~~G~~a~~NFp 49 (107)
|+|+|+|+|.+-||+.+..+---....|=|
T Consensus 125 gyf~~~~da~~f~de~~~~l~~q~~apnSP 154 (1220)
T PRK07562 125 GYFDSEEDARAFYDELRYMLATQMVAPNSP 154 (1220)
T ss_pred CccCCHHHHHHHHHHHHHHHHhcCcCCCCc
Confidence 899999999999997777665555455544
No 32
>PF11453 DUF2950: Protein of unknown function (DUF2950); InterPro: IPR021556 This is a bacterial family of uncharacterised proteins.
Probab=23.15 E-value=77 Score=25.83 Aligned_cols=17 Identities=24% Similarity=0.309 Sum_probs=14.0
Q ss_pred CCCCHHHHHHHHHHHHH
Q 037259 21 TFDIVEEVARSYAEAAK 37 (107)
Q Consensus 21 tFdT~eEAA~AYD~aA~ 37 (107)
+|+|+|+|+.|+-.|..
T Consensus 3 ~F~tPe~Aa~Al~~Av~ 19 (271)
T PF11453_consen 3 VFPTPEAAADALVDAVA 19 (271)
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 69999999999965543
No 33
>COG3087 FtsN Cell division protein [Cell division and chromosome partitioning]
Probab=22.08 E-value=1.5e+02 Score=24.13 Aligned_cols=29 Identities=21% Similarity=0.281 Sum_probs=22.1
Q ss_pred EEEe--CCCCCeEEeecCCCCHHHHHHHHHH
Q 037259 6 SEIV--DPKKGVRVCLGTFDIVEEVARSYAE 34 (107)
Q Consensus 6 AeIr--~~~~~kr~~LGtFdT~eEAA~AYD~ 34 (107)
+.|. .-...-||-||.|++.++|..|-++
T Consensus 218 skI~~~~~~~wyRV~vGP~n~~~~a~~aq~r 248 (264)
T COG3087 218 SKITGVTNGGWYRVRVGPFNSKADAVKAQKR 248 (264)
T ss_pred ceeEeecCCceEEEEecCCCcHHHHHHHHHH
Confidence 4555 3345689999999999999997654
No 34
>PF13773 DUF4170: Domain of unknown function (DUF4170)
Probab=21.81 E-value=99 Score=20.37 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=19.4
Q ss_pred EeecCCCCHHHHHHHHHHHHHHh
Q 037259 17 VCLGTFDIVEEVARSYAEAAKRN 39 (107)
Q Consensus 17 ~~LGtFdT~eEAA~AYD~aA~~~ 39 (107)
-.+|-|++-++|..|....|.+.
T Consensus 27 diVG~fp~y~~A~~aWrakAq~T 49 (69)
T PF13773_consen 27 DIVGIFPDYASAYAAWRAKAQRT 49 (69)
T ss_pred eEEecCCChHHHHHHHHHHHhCc
Confidence 35799999999999998888754
No 35
>PF09954 DUF2188: Uncharacterized protein conserved in bacteria (DUF2188); InterPro: IPR018691 This family has no known function.
Probab=21.21 E-value=2e+02 Score=17.28 Aligned_cols=33 Identities=33% Similarity=0.403 Sum_probs=20.0
Q ss_pred CceEEEEeCCCCCeEEeecCCCCHHHHHHHHHHHHHH
Q 037259 2 GKWASEIVDPKKGVRVCLGTFDIVEEVARSYAEAAKR 38 (107)
Q Consensus 2 GKW~AeIr~~~~~kr~~LGtFdT~eEAA~AYD~aA~~ 38 (107)
|.|..+.- ...+ -..+|+|-+||..+=...|+.
T Consensus 9 ~~W~v~~e---g~~r-a~~~~~Tk~eAi~~Ar~~a~~ 41 (62)
T PF09954_consen 9 GGWAVKKE---GAKR-ASKTFDTKAEAIEAARELAKN 41 (62)
T ss_pred CCceEEeC---CCcc-cccccCcHHHHHHHHHHHHHh
Confidence 45764444 2222 278999998887765555544
No 36
>PRK12757 cell division protein FtsN; Provisional
Probab=20.88 E-value=1.9e+02 Score=23.29 Aligned_cols=32 Identities=19% Similarity=0.199 Sum_probs=23.5
Q ss_pred EEEEeCCCCCeEEeecCCCCHHHHHHHHHHHH
Q 037259 5 ASEIVDPKKGVRVCLGTFDIVEEVARSYAEAA 36 (107)
Q Consensus 5 ~AeIr~~~~~kr~~LGtFdT~eEAA~AYD~aA 36 (107)
.++|....+--||.||-|.+.++|..+-++..
T Consensus 211 ~a~I~~~gg~yRVrVGPf~sr~~A~~~~~rLk 242 (256)
T PRK12757 211 ESRITTGGGWNRVVLGPYNSKAAADKMLQRLK 242 (256)
T ss_pred ceEEeecCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 35565333457899999999999988876555
No 37
>cd07996 WGR_MMR_like WGR domain of molybdate metabolism regulator and related proteins. The WGR domain is found in the putative Escherichia coli molybdate metabolism regulator and related bacterial proteins, as well as in various other bacterial proteins of unknown function. It has been called WGR after the most conserved central motif of the domain. The domain appears to occur in single-domain proteins and in a variety of domain architectures, together with ATP-dependent DNA ligase domains, WD40 repeats, leucine-rich repeats, and other domains. It has been proposed to function as a nucleic acid binding domain.
Probab=20.69 E-value=1.1e+02 Score=18.81 Aligned_cols=19 Identities=21% Similarity=0.293 Sum_probs=15.6
Q ss_pred CCCHHHHHHHHHHHHHHhc
Q 037259 22 FDIVEEVARSYAEAAKRNR 40 (107)
Q Consensus 22 FdT~eEAA~AYD~aA~~~~ 40 (107)
|+|.++|..++++....-.
T Consensus 49 ~~s~~~A~~~~~k~~~~K~ 67 (74)
T cd07996 49 FDSEEEALKAAEKLIREKL 67 (74)
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 8899999999988766544
No 38
>PF08178 GnsAB: GnsA/GnsB family; InterPro: IPR012563 This family consists of the GnsA/GnsB family. GnsA and GnsB are multicopy suppressors of the secG null mutation. These proteins participate in the synthesis of phospholipids, suggesting the functional relationship between SecG and membrane phospholipids. Over expression of gnsA and gnsB causes a remarkable increase in the unsaturated fatty acid content. However, the gnsA-gnsB double null mutant exhibits no effect. Both proteins are predicted to possess a helix-turn-helix structure [].
Probab=20.40 E-value=34 Score=21.54 Aligned_cols=10 Identities=50% Similarity=0.215 Sum_probs=8.2
Q ss_pred CceEEEEeCC
Q 037259 2 GKWASEIVDP 11 (107)
Q Consensus 2 GKW~AeIr~~ 11 (107)
|+|+++|...
T Consensus 30 Gke~sei~~~ 39 (54)
T PF08178_consen 30 GKEVSEIEFI 39 (54)
T ss_pred Cceeeeeeeh
Confidence 8999999843
Done!