Query 037259
Match_columns 107
No_of_seqs 136 out of 976
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 17:42:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037259.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/037259hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gcca_ d.10.1.2 (A:) GCC-box 99.9 9.1E-25 6.6E-29 138.2 6.0 51 1-51 11-62 (63)
2 d1utaa_ d.58.52.1 (A:) Cell di 61.3 5 0.00036 23.1 3.7 32 5-36 32-63 (77)
3 d1b7fa2 d.58.7.1 (A:205-289) S 37.2 15 0.0011 20.6 3.2 27 8-34 39-67 (85)
4 d1z1ba1 d.10.1.4 (A:11-59) lam 33.9 27 0.002 19.2 3.7 20 8-29 16-35 (49)
5 d1euha_ c.82.1.1 (A:) Aldehyde 25.8 40 0.0029 24.6 4.5 38 2-39 10-52 (474)
6 d1fxla2 d.58.7.1 (A:119-203) H 23.8 36 0.0026 19.0 3.2 26 8-33 39-66 (85)
7 d2cq1a1 d.58.7.1 (A:51-138) Po 21.7 9.3 0.00068 21.8 0.0 35 15-49 44-81 (88)
8 d2bz2a1 d.58.7.1 (A:35-113) Ne 21.1 20 0.0015 19.9 1.6 17 11-27 2-18 (79)
9 d2cr9a1 d.297.1.1 (A:8-133) Po 20.6 47 0.0034 20.9 3.5 37 15-51 80-117 (126)
10 d1h2vz_ d.58.7.1 (Z:) CBP20, 2 20.4 46 0.0033 18.9 3.2 26 9-34 41-68 (93)
11 d1wg1a_ d.58.7.1 (A:) Probable 20.2 33 0.0024 19.5 2.4 18 17-34 42-59 (88)
No 1
>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=99.90 E-value=9.1e-25 Score=138.20 Aligned_cols=51 Identities=47% Similarity=0.637 Sum_probs=48.1
Q ss_pred CCceEEEEeCCC-CCeEEeecCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 037259 1 MGKWASEIVDPK-KGVRVCLGTFDIVEEVARSYAEAAKRNRYNMAKLDFADL 51 (107)
Q Consensus 1 wGKW~AeIr~~~-~~kr~~LGtFdT~eEAA~AYD~aA~~~~G~~a~~NFp~~ 51 (107)
||||.|+||+|. +++++|||+|+|+||||+|||++|++++|+++.+|||..
T Consensus 11 ~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~ 62 (63)
T d1gcca_ 11 WGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp TTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence 799999999874 679999999999999999999999999999999999975
No 2
>d1utaa_ d.58.52.1 (A:) Cell division protein FtsN {Escherichia coli [TaxId: 562]}
Probab=61.27 E-value=5 Score=23.06 Aligned_cols=32 Identities=19% Similarity=0.167 Sum_probs=25.0
Q ss_pred EEEEeCCCCCeEEeecCCCCHHHHHHHHHHHH
Q 037259 5 ASEIVDPKKGVRVCLGTFDIVEEVARSYAEAA 36 (107)
Q Consensus 5 ~AeIr~~~~~kr~~LGtFdT~eEAA~AYD~aA 36 (107)
.+.|....+--||.+|.|.+.++|..+-+...
T Consensus 32 ~~~i~~~~~~yRV~vGpf~~~~~A~~~~~~L~ 63 (77)
T d1utaa_ 32 DSKITTNNGWNRVVIGPVKGKENADSTLNRLK 63 (77)
T ss_dssp CEEEEECSSSEEEEESSCBTTTHHHHHHHHHH
T ss_pred cceecCCCcEEEEEECCcCCHHHHHHHHHHHH
Confidence 45666555678999999999999998876553
No 3
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}
Probab=37.21 E-value=15 Score=20.64 Aligned_cols=27 Identities=15% Similarity=0.211 Sum_probs=18.1
Q ss_pred EeCCCCCeEEeec--CCCCHHHHHHHHHH
Q 037259 8 IVDPKKGVRVCLG--TFDIVEEVARSYAE 34 (107)
Q Consensus 8 Ir~~~~~kr~~LG--tFdT~eEAA~AYD~ 34 (107)
|+++.+|+....| +|.+.++|.+|.+.
T Consensus 39 ~~d~~~g~~~g~afV~f~~~~~A~~Ai~~ 67 (85)
T d1b7fa2 39 LRDKLTGRPRGVAFVRYNKREEAQEAISA 67 (85)
T ss_dssp EECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred ecccccccCceeEEEEECCHHHHHHHHHH
Confidence 3455555554333 79999999988653
No 4
>d1z1ba1 d.10.1.4 (A:11-59) lambda integrase N-terminal domain {Bacteriophage lambda [TaxId: 10710]}
Probab=33.95 E-value=27 Score=19.20 Aligned_cols=20 Identities=25% Similarity=0.292 Sum_probs=15.3
Q ss_pred EeCCCCCeEEeecCCCCHHHHH
Q 037259 8 IVDPKKGVRVCLGTFDIVEEVA 29 (107)
Q Consensus 8 Ir~~~~~kr~~LGtFdT~eEAA 29 (107)
-|+|.+||-+-||+ +..+|.
T Consensus 16 yr~P~tGk~~~LG~--d~~~A~ 35 (49)
T d1z1ba1 16 YRDPRTGKEFGLGR--DRRIAI 35 (49)
T ss_dssp EECTTTCCEEEEES--CHHHHH
T ss_pred eecCCCCceecCCc--cHHHHH
Confidence 46899999999999 444443
No 5
>d1euha_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH {Streptococcus mutans [TaxId: 1309]}
Probab=25.83 E-value=40 Score=24.55 Aligned_cols=38 Identities=32% Similarity=0.451 Sum_probs=26.7
Q ss_pred CceEE-----EEeCCCCCeEEeecCCCCHHHHHHHHHHHHHHh
Q 037259 2 GKWAS-----EIVDPKKGVRVCLGTFDIVEEVARSYAEAAKRN 39 (107)
Q Consensus 2 GKW~A-----eIr~~~~~kr~~LGtFdT~eEAA~AYD~aA~~~ 39 (107)
|+|.. .+.+|.+|+.+.-=...|.+|..+|.+.|...+
T Consensus 10 G~~~~~~~~~~v~~P~tg~~i~~~~~a~~~dv~~Ai~~A~~A~ 52 (474)
T d1euha_ 10 GEWKLSENEIKIYEPASGAELGSVPAMSTEEVDYVYASAKKAQ 52 (474)
T ss_dssp TEEECCSSEEEEECTTTCCEEEEEECCCHHHHHHHHHHHHHHH
T ss_pred CeecCCCCCEEEeCCCCCCEEEEEeCCCHHHHHHHHHHHHHHh
Confidence 55654 678899998875555678888888876665543
No 6
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.75 E-value=36 Score=19.00 Aligned_cols=26 Identities=27% Similarity=0.273 Sum_probs=17.0
Q ss_pred EeCCCCCeEEe--ecCCCCHHHHHHHHH
Q 037259 8 IVDPKKGVRVC--LGTFDIVEEVARSYA 33 (107)
Q Consensus 8 Ir~~~~~kr~~--LGtFdT~eEAA~AYD 33 (107)
|+++.+|+..- .=+|.+.++|.+|.+
T Consensus 39 ~~d~~~g~~kg~afV~f~~~~~a~~Ai~ 66 (85)
T d1fxla2 39 LVDQVTGVSRGVGFIRFDKRIEAEEAIK 66 (85)
T ss_dssp EECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred ccccccccCCCeeEEEEcCHHHHHHHHH
Confidence 34555554432 336999999988864
No 7
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.69 E-value=9.3 Score=21.84 Aligned_cols=35 Identities=6% Similarity=-0.034 Sum_probs=24.0
Q ss_pred eEEeecCCCCHHHHHHHHHHHHH---HhcCCCCCCCCC
Q 037259 15 VRVCLGTFDIVEEVARSYAEAAK---RNRYNMAKLDFA 49 (107)
Q Consensus 15 kr~~LGtFdT~eEAA~AYD~aA~---~~~G~~a~~NFp 49 (107)
+..-+-.|++.|+|.+|.+.... .++|..-+++|-
T Consensus 44 ~~~afV~f~~~e~A~~a~~~~~~~~~~~~g~~l~v~~s 81 (88)
T d2cq1a1 44 KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYS 81 (88)
T ss_dssp TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEC
T ss_pred ceEEEEEeCCHHHHHHHHHHHccCCCccCCCEEEEEEC
Confidence 44567889999999999877653 355544444543
No 8
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.07 E-value=20 Score=19.89 Aligned_cols=17 Identities=24% Similarity=0.362 Sum_probs=13.0
Q ss_pred CCCCeEEeecCCCCHHH
Q 037259 11 PKKGVRVCLGTFDIVEE 27 (107)
Q Consensus 11 ~~~~kr~~LGtFdT~eE 27 (107)
|..++.||+|.++.-|+
T Consensus 2 p~~~~ti~V~~~~~te~ 18 (79)
T d2bz2a1 2 PRKGNTLYVYGEDMTPT 18 (79)
T ss_dssp CCCCCEEEEECSSCCHH
T ss_pred CCCCCEEEEECCCCCHH
Confidence 56788899988886554
No 9
>d2cr9a1 d.297.1.1 (A:8-133) Poly [ADP-ribose] polymerase-1, PARP-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.60 E-value=47 Score=20.87 Aligned_cols=37 Identities=11% Similarity=0.082 Sum_probs=25.2
Q ss_pred eEEeecCCCCHHHHHHHHHHHHHHhcCCC-CCCCCCCC
Q 037259 15 VRVCLGTFDIVEEVARSYAEAAKRNRYNM-AKLDFADL 51 (107)
Q Consensus 15 kr~~LGtFdT~eEAA~AYD~aA~~~~G~~-a~~NFp~~ 51 (107)
...-+..|.+.++|..+|.+.-+.--|.. .--||...
T Consensus 80 g~~~~~~~~~~~~Ai~~F~kkF~~KTgn~W~~R~f~k~ 117 (126)
T d2cr9a1 80 GSNKLEQMPSKEDAIEHFMKLYEEKTGNAWHSKNFTKY 117 (126)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHSSSCTTCSSCCCC
T ss_pred ccEecCCcCCHHHHHHHHHHHHHHHhCCCcccCCCccC
Confidence 34457789999999999988777666632 22256443
No 10
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.37 E-value=46 Score=18.91 Aligned_cols=26 Identities=8% Similarity=0.042 Sum_probs=17.4
Q ss_pred eCCCCCeEEeec--CCCCHHHHHHHHHH
Q 037259 9 VDPKKGVRVCLG--TFDIVEEVARSYAE 34 (107)
Q Consensus 9 r~~~~~kr~~LG--tFdT~eEAA~AYD~ 34 (107)
+++.+++..-.| .|.+.++|..|.+.
T Consensus 41 ~~~~~~~~kg~afV~f~~~~~A~~Ai~~ 68 (93)
T d1h2vz_ 41 LDKMKKTACGFCFVEYYSRADAENAMRY 68 (93)
T ss_dssp ECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred cccccccccceEEEEECCHHHHHHHHHH
Confidence 444455443333 89999999998764
No 11
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.21 E-value=33 Score=19.45 Aligned_cols=18 Identities=11% Similarity=-0.047 Sum_probs=13.9
Q ss_pred EeecCCCCHHHHHHHHHH
Q 037259 17 VCLGTFDIVEEVARSYAE 34 (107)
Q Consensus 17 ~~LGtFdT~eEAA~AYD~ 34 (107)
.-.=+|++.++|..|...
T Consensus 42 ~afV~f~~~~~A~~Ai~~ 59 (88)
T d1wg1a_ 42 TAFVTLLNGEQAQNAIQM 59 (88)
T ss_dssp EEEECCSCHHHHHHHHHH
T ss_pred ceEEEECCHHHHHHHHHH
Confidence 445589999999988654
Done!