BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037262
         (107 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
           Papain At 2.6 Angstroem Resolution
 pdb|3TNX|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
           Papain At 2.6 Angstroem Resolution
 pdb|3USV|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
           Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
 pdb|3USV|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
           Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
          Length = 363

 Score = 81.3 bits (199), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/85 (42%), Positives = 58/85 (68%), Gaps = 6/85 (7%)

Query: 23  LDMSIVSYDKTHESKSSSWRTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFI 82
           +D SIV Y +   + +      + ++ +FE+W++KH K Y  + EK  RFEIFK+NL++I
Sbjct: 44  MDFSIVGYSQNDLTST------ERLIQLFESWMLKHNKIYKNIDEKIYRFEIFKDNLKYI 97

Query: 83  DEHNSENRTYKVGLNRFADLTNEEY 107
           DE N +N +Y +GLN FAD++N+E+
Sbjct: 98  DETNKKNNSYWLGLNVFADMSNDEF 122


>pdb|1PCI|A Chain A, Procaricain
 pdb|1PCI|B Chain B, Procaricain
 pdb|1PCI|C Chain C, Procaricain
          Length = 322

 Score = 77.4 bits (189), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/84 (41%), Positives = 54/84 (64%), Gaps = 6/84 (7%)

Query: 24  DMSIVSYDKTHESKSSSWRTDDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFID 83
           D SIV Y +   + +      + ++ +F +W++ H K Y  + EK  RFEIFK+NL +ID
Sbjct: 1   DFSIVGYSQDDLTST------ERLIQLFNSWMLNHNKFYENVDEKLYRFEIFKDNLNYID 54

Query: 84  EHNSENRTYKVGLNRFADLTNEEY 107
           E N +N +Y +GLN FADL+N+E+
Sbjct: 55  ETNKKNNSYWLGLNEFADLSNDEF 78


>pdb|3F75|P Chain P, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
           With Its Propeptide
          Length = 106

 Score = 46.2 bits (108), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 35/57 (61%)

Query: 51  FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENRTYKVGLNRFADLTNEEY 107
           F ++   + K+Y    EK++R+ IFK NL +I  HN +  +Y + +N F DL+ +E+
Sbjct: 25  FSSFQAMYAKSYATEEEKQRRYAIFKNNLVYIHTHNQQGYSYSLKMNHFGDLSRDEF 81


>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio
           Molitor Larval Midgut
          Length = 329

 Score = 39.7 bits (91), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 35/56 (62%), Gaps = 4/56 (7%)

Query: 56  VKHGKAYNALGEKEKRFEIFKENLRFIDEHNSE----NRTYKVGLNRFADLTNEEY 107
           + H K+Y++  E+ +R  IFK+N+  I EHN++      TY   +N+F D++ EE+
Sbjct: 32  LTHKKSYSSPIEEIRRQLIFKDNVAKIAEHNAKFEKGEVTYSKAMNQFGDMSKEEF 87


>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola
           Hepatica
          Length = 310

 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 5/62 (8%)

Query: 50  MFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENR----TYKVGLNRFADLTNE 105
           ++  W   + K YN   ++ +R  I+++N++ I EHN  +     TY +GLN+F D+T E
Sbjct: 4   LWHQWKRMYNKEYNGADDQHRR-NIWEKNVKHIQEHNLRHDLGLVTYTLGLNQFTDMTFE 62

Query: 106 EY 107
           E+
Sbjct: 63  EF 64


>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human
           Procathepsin S
          Length = 315

 Score = 37.7 bits (86), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 4/57 (7%)

Query: 54  WLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSEN----RTYKVGLNRFADLTNEE 106
           W   +GK Y    E+  R  I+++NL+F+  HN E+     +Y +G+N   D+T+EE
Sbjct: 15  WKKTYGKQYKEKNEEAVRRLIWEKNLKFVMLHNLEHSMGMHSYDLGMNHLGDMTSEE 71


>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From
           Tenebrio Molitor Larval Midgut
 pdb|3QJ3|B Chain B, Structure Of Digestive Procathepsin L2 Proteinase From
           Tenebrio Molitor Larval Midgut
          Length = 331

 Score = 37.7 bits (86), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 4/64 (6%)

Query: 47  VMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENR----TYKVGLNRFADL 102
           V   +E +   + ++Y    E+  R +IF++ L   +EHN + R    +Y +G+N F D+
Sbjct: 18  VAEKWENFKTTYARSYVNAKEETFRKQIFQKKLETFEEHNEKYRQGLVSYTLGVNLFTDM 77

Query: 103 TNEE 106
           T EE
Sbjct: 78  TPEE 81


>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K
 pdb|7PCK|B Chain B, Crystal Structure Of Wild Type Human Procathepsin K
 pdb|7PCK|C Chain C, Crystal Structure Of Wild Type Human Procathepsin K
 pdb|7PCK|D Chain D, Crystal Structure Of Wild Type Human Procathepsin K
 pdb|1BY8|A Chain A, The Crystal Structure Of Human Procathepsin K
          Length = 314

 Score = 36.6 bits (83), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 4/60 (6%)

Query: 51  FEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSEN----RTYKVGLNRFADLTNEE 106
           +E W   H K YN   ++  R  I+++NL++I  HN E      TY++ +N   D+T+EE
Sbjct: 11  WELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMNHLGDMTSEE 70


>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L
          Length = 316

 Score = 36.2 bits (82), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 19/68 (27%), Positives = 38/68 (55%), Gaps = 5/68 (7%)

Query: 44  DDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENR----TYKVGLNRF 99
           D  + A +  W   H + Y  + E+  R  ++++N++ I+ HN E R    ++ + +N F
Sbjct: 5   DHSLEAQWTKWKAMHNRLY-GMNEEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAF 63

Query: 100 ADLTNEEY 107
            D+T+EE+
Sbjct: 64  GDMTSEEF 71


>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform
          Length = 312

 Score = 35.8 bits (81), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 19/68 (27%), Positives = 38/68 (55%), Gaps = 5/68 (7%)

Query: 44  DDEVMAMFEAWLVKHGKAYNALGEKEKRFEIFKENLRFIDEHNSENR----TYKVGLNRF 99
           D  + A +  W   H + Y  + E+  R  ++++N++ I+ HN E R    ++ + +N F
Sbjct: 1   DHSLEAQWTKWKAMHNRLY-GMNEEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAF 59

Query: 100 ADLTNEEY 107
            D+T+EE+
Sbjct: 60  GDMTSEEF 67


>pdb|2L95|A Chain A, Solution Structure Of Cytotoxic T-Lymphocyte
           Antigent-2(Ctla Protein), Crammer At Ph 6.0
          Length = 80

 Score = 31.2 bits (69), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 4/41 (9%)

Query: 71  RFEIFKENLRFIDEHNSE----NRTYKVGLNRFADLTNEEY 107
           R  I+ E+   I+EHN +      T+K+G+N  ADLT EE+
Sbjct: 29  RRRIYAESKARIEEHNRKFEKGEVTWKMGINHLADLTPEEF 69


>pdb|3NOY|A Chain A, Crystal Structure Of Ispg (Gcpe)
 pdb|3NOY|B Chain B, Crystal Structure Of Ispg (Gcpe)
 pdb|3NOY|C Chain C, Crystal Structure Of Ispg (Gcpe)
 pdb|3NOY|D Chain D, Crystal Structure Of Ispg (Gcpe)
          Length = 366

 Score = 27.3 bits (59), Expect = 2.0,   Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 14/25 (56%)

Query: 53  AWLVKHGKAYNALGEKEKRFEIFKE 77
           AWL KHGK    + E E   E+ KE
Sbjct: 331 AWLFKHGKPIKKVDESEMVDELLKE 355


>pdb|4EFJ|A Chain A, Crystal Structure Of I-Gzemii Laglidadg Homing
           Endonuclease In Complex With Dna Target Site
 pdb|4EFJ|B Chain B, Crystal Structure Of I-Gzemii Laglidadg Homing
           Endonuclease In Complex With Dna Target Site
          Length = 300

 Score = 26.2 bits (56), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 4/42 (9%)

Query: 55  LVKHGKAYNALGEKEKRFEIFKENLRFIDEHNS-ENRTYKVG 95
           ++ H   YN + +K+  FE+FK   + I++ NS E+ +Y+VG
Sbjct: 84  IISHFDKYNLITQKKADFELFK---KIINKLNSQEHLSYEVG 122


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.132    0.382 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,959,739
Number of Sequences: 62578
Number of extensions: 100948
Number of successful extensions: 330
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 313
Number of HSP's gapped (non-prelim): 18
length of query: 107
length of database: 14,973,337
effective HSP length: 72
effective length of query: 35
effective length of database: 10,467,721
effective search space: 366370235
effective search space used: 366370235
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)